# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|389848588|ref|YP_006350825.1| - 2e-19 69.3 0.3 4.1e-19 68.3 0.3 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|389848588|ref|YP_006350825.1| - 9.2e-17 61.6 0.6 1.7e-15 57.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|389848588|ref|YP_006350825.1| - 4e-07 30.5 0.6 1.8e-06 28.4 0.1 2.4 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|389848588|ref|YP_006350825.1| - 5.5e-07 30.1 0.0 5.5e-07 30.1 0.0 2.4 2 2 0 2 2 2 1 AAA ATPase domain TniB PF05621.11 gi|389848588|ref|YP_006350825.1| - 7.5e-05 22.2 0.0 0.00019 20.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial TniB protein DUF87 PF01935.17 gi|389848588|ref|YP_006350825.1| - 0.00021 21.5 1.5 0.00054 20.1 0.1 2.2 2 1 1 3 3 3 1 Helicase HerA, central domain AAA_5 PF07728.14 gi|389848588|ref|YP_006350825.1| - 0.00066 19.7 0.6 0.0098 15.9 0.6 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|389848588|ref|YP_006350825.1| - 0.00073 19.3 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|389848588|ref|YP_006350825.1| - 0.0012 18.7 0.1 0.0034 17.3 0.0 1.7 2 0 0 2 2 2 1 NACHT domain DEAD PF00270.29 gi|389848588|ref|YP_006350825.1| - 0.0026 17.6 1.6 0.8 9.5 0.2 2.5 1 1 1 2 2 2 2 DEAD/DEAH box helicase PhoH PF02562.16 gi|389848588|ref|YP_006350825.1| - 0.0026 17.2 0.1 0.69 9.3 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA_2 PF07724.14 gi|389848588|ref|YP_006350825.1| - 0.0037 17.4 0.0 0.01 16.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) CbiA PF01656.23 gi|389848588|ref|YP_006350825.1| - 0.0074 16.4 0.3 0.029 14.4 0.2 2.0 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.15 gi|389848588|ref|YP_006350825.1| - 0.0088 16.1 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|389848588|ref|YP_006350825.1| - 0.009 15.4 0.0 0.014 14.7 0.0 1.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|389848588|ref|YP_006350825.1| - 0.013 15.2 0.1 0.058 13.1 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_32 PF13654.6 gi|389848588|ref|YP_006350825.1| - 0.015 14.1 1.3 0.95 8.2 1.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|389848588|ref|YP_006350825.1| - 0.022 14.0 0.0 0.051 12.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|389848588|ref|YP_006350825.1| - 0.023 15.2 0.5 0.066 13.7 0.5 2.1 1 1 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|389848588|ref|YP_006350825.1| - 0.043 14.4 0.0 0.22 12.1 0.0 2.3 1 1 0 1 1 1 0 AAA domain P-II PF00543.22 gi|389848588|ref|YP_006350825.1| - 0.062 13.9 2.1 1.1 9.9 0.0 2.9 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II Microtub_bd PF16796.5 gi|389848588|ref|YP_006350825.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Microtubule binding AAA_7 PF12775.7 gi|389848588|ref|YP_006350825.1| - 0.11 12.1 0.0 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|389848588|ref|YP_006350825.1| - 0.14 12.6 0.3 1.4 9.3 0.1 2.7 2 1 0 2 2 2 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|389848588|ref|YP_006350825.1| - 0.15 12.2 0.2 0.38 10.9 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_31 PF13614.6 gi|389848590|ref|YP_006350827.1| - 1.7e-32 112.7 0.0 2.2e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848590|ref|YP_006350827.1| - 1.2e-12 48.0 0.0 1.8e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|389848590|ref|YP_006350827.1| - 2.6e-10 40.2 0.0 4.9e-10 39.3 0.0 1.4 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|389848590|ref|YP_006350827.1| - 1.9e-08 34.1 0.1 1.6e-07 31.1 0.0 2.0 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|389848590|ref|YP_006350827.1| - 1.9e-07 30.8 0.1 2.9e-06 26.9 0.0 2.3 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|389848590|ref|YP_006350827.1| - 2.3e-07 30.4 0.2 0.00042 19.7 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.15 gi|389848590|ref|YP_006350827.1| - 1.6e-05 24.3 0.0 0.00011 21.5 0.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|389848590|ref|YP_006350827.1| - 0.0029 17.0 0.0 0.016 14.5 0.0 2.0 2 0 0 2 2 2 1 VirC1 protein CLP1_P PF16575.5 gi|389848590|ref|YP_006350827.1| - 0.0089 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|389848590|ref|YP_006350827.1| - 0.018 14.0 0.0 0.031 13.2 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF1611 PF07755.11 gi|389848590|ref|YP_006350827.1| - 0.2 10.9 0.0 0.38 10.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain Spermine_synth PF01564.17 gi|389848592|ref|YP_006350829.1| - 9.9e-15 54.4 0.0 1.5e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain DUF1616 PF07760.11 gi|389848592|ref|YP_006350829.1| - 0.004 16.6 0.1 0.0066 15.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2617 PF10936.8 gi|389848593|ref|YP_006350830.1| - 3e-05 24.2 0.2 4.8e-05 23.5 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF2617 DUF953 PF06110.11 gi|389848594|ref|YP_006350831.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF953) zinc_ribbon_15 PF17032.5 gi|389848594|ref|YP_006350831.1| - 0.14 13.0 0.1 0.25 12.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family DUF3060 PF11259.8 gi|389848594|ref|YP_006350831.1| - 0.45 10.2 3.3 1 9.1 1.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF3060) DUF1610 PF07754.11 gi|389848594|ref|YP_006350831.1| - 0.9 9.6 3.8 4.1 7.4 2.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Pentapeptide_3 PF13576.6 gi|389848596|ref|YP_006350833.1| - 3.7e-50 167.9 98.8 1.1e-09 38.3 8.1 10.3 3 2 5 10 10 10 8 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|389848596|ref|YP_006350833.1| - 3.9e-10 39.6 5.5 1.2e-09 38.0 1.5 2.4 1 1 1 2 2 2 1 Ion channel Pentapeptide PF00805.22 gi|389848596|ref|YP_006350833.1| - 0.00026 20.5 29.7 0.88 9.3 0.1 11.0 11 2 2 13 13 13 5 Pentapeptide repeats (8 copies) DUF3672 PF12421.8 gi|389848596|ref|YP_006350833.1| - 0.013 15.4 0.1 10 6.0 0.0 3.2 3 1 0 3 3 3 0 Fibronectin type III protein HTH_10 PF04967.12 gi|389848597|ref|YP_006350834.1| - 1.7e-22 79.0 0.0 2.7e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|389848597|ref|YP_006350834.1| - 0.0013 18.2 0.4 0.0056 16.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|389848597|ref|YP_006350834.1| - 0.0038 17.4 0.0 0.0069 16.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase MarR_2 PF12802.7 gi|389848597|ref|YP_006350834.1| - 0.031 14.2 0.1 0.089 12.7 0.0 1.8 2 0 0 2 2 2 0 MarR family Sigma70_r4_2 PF08281.12 gi|389848597|ref|YP_006350834.1| - 0.033 13.9 0.4 0.44 10.3 0.4 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|389848597|ref|YP_006350834.1| - 0.034 14.1 0.0 0.088 12.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.7 gi|389848597|ref|YP_006350834.1| - 0.078 13.1 0.1 0.21 11.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|389848597|ref|YP_006350834.1| - 0.092 12.3 0.3 0.37 10.3 0.2 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Asp_Glu_race PF01177.22 gi|389848598|ref|YP_006350835.1| - 5.3e-54 183.4 0.0 6.1e-54 183.2 0.0 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Pantoate_transf PF02548.15 gi|389848598|ref|YP_006350835.1| - 0.034 13.5 0.1 0.066 12.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate hydroxymethyltransferase ABC2_membrane_3 PF12698.7 gi|389848600|ref|YP_006350837.1| - 8.9e-05 21.8 10.8 8.9e-05 21.8 10.8 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848600|ref|YP_006350837.1| - 0.00013 21.6 5.3 0.00013 21.6 5.3 3.0 3 1 0 3 3 3 1 ABC-2 family transporter protein ArAE_2_N PF10337.9 gi|389848600|ref|YP_006350837.1| - 1 8.3 4.0 3 6.8 0.2 2.2 2 0 0 2 2 2 0 Putative ER transporter, 6TM, N-terminal ABC_tran PF00005.27 gi|389848601|ref|YP_006350838.1| - 6e-28 98.1 0.0 1.1e-27 97.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848601|ref|YP_006350838.1| - 3.9e-11 43.3 0.1 3e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|389848601|ref|YP_006350838.1| - 1.2e-05 25.9 0.0 2.9e-05 24.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|389848601|ref|YP_006350838.1| - 0.00012 21.8 0.1 0.00023 20.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389848601|ref|YP_006350838.1| - 0.00017 21.1 0.0 0.0081 15.6 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|389848601|ref|YP_006350838.1| - 0.0029 17.4 0.0 0.24 11.1 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848601|ref|YP_006350838.1| - 0.0071 16.3 0.1 0.035 14.0 0.1 2.1 1 1 1 2 2 2 1 RsgA GTPase AAA_33 PF13671.6 gi|389848601|ref|YP_006350838.1| - 0.0088 16.2 0.0 0.033 14.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain MukB PF04310.12 gi|389848601|ref|YP_006350838.1| - 0.027 14.3 0.0 0.056 13.2 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal AAA_PrkA PF08298.11 gi|389848601|ref|YP_006350838.1| - 0.034 13.1 0.0 0.049 12.5 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_27 PF13514.6 gi|389848601|ref|YP_006350838.1| - 0.037 13.6 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389848601|ref|YP_006350838.1| - 0.054 13.9 0.0 0.1 13.0 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|389848601|ref|YP_006350838.1| - 0.068 12.9 0.1 0.18 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|389848602|ref|YP_006350839.1| - 6.7e-32 110.9 0.0 1e-31 110.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389848602|ref|YP_006350839.1| - 7e-14 51.8 0.3 9.3e-13 48.2 0.1 2.5 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|389848602|ref|YP_006350839.1| - 3.2e-12 47.1 0.2 2.3e-11 44.4 0.1 2.5 2 0 0 2 2 2 1 MalK OB fold domain TOBE PF03459.17 gi|389848602|ref|YP_006350839.1| - 1.4e-06 28.5 0.5 4.2e-06 27.0 0.1 2.1 2 0 0 2 2 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|389848602|ref|YP_006350839.1| - 2.7e-06 27.8 0.1 8.8e-05 23.0 0.1 2.9 3 0 0 3 3 2 1 CysA C-terminal regulatory domain AAA_21 PF13304.6 gi|389848602|ref|YP_006350839.1| - 3.5e-06 27.1 0.7 0.049 13.4 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|389848602|ref|YP_006350839.1| - 0.0012 18.8 0.0 0.002 18.1 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|389848602|ref|YP_006350839.1| - 0.0032 17.9 0.1 0.0055 17.1 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848602|ref|YP_006350839.1| - 0.0036 17.2 0.0 0.006 16.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|389848602|ref|YP_006350839.1| - 0.0037 17.5 0.2 0.0067 16.7 0.2 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389848602|ref|YP_006350839.1| - 0.017 14.6 0.1 0.19 11.2 0.1 2.0 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|389848602|ref|YP_006350839.1| - 0.026 14.7 0.1 0.13 12.4 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|389848602|ref|YP_006350839.1| - 0.03 14.6 0.2 0.071 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|389848602|ref|YP_006350839.1| - 0.082 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|389848602|ref|YP_006350839.1| - 0.096 12.4 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|389848602|ref|YP_006350839.1| - 0.13 11.9 0.1 0.23 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|389848602|ref|YP_006350839.1| - 0.16 11.7 0.3 0.52 10.0 0.1 2.1 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|389848603|ref|YP_006350840.1| - 9.3e-17 61.4 16.4 9.3e-17 61.4 16.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848604|ref|YP_006350841.1| - 3e-08 33.6 34.3 1.3e-06 28.3 34.3 2.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|389848605|ref|YP_006350842.1| - 1.1e-49 169.8 9.4 1.1e-49 169.8 9.4 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389848605|ref|YP_006350842.1| - 2.2e-30 106.7 10.3 3.2e-30 106.2 10.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389848605|ref|YP_006350842.1| - 0.00044 20.1 0.1 1 9.1 0.1 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848605|ref|YP_006350842.1| - 0.0023 17.7 0.5 0.0071 16.1 0.5 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_6 PF13343.6 gi|389848605|ref|YP_006350842.1| - 0.004 16.6 0.1 1.5 8.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Helo_like_N PF17111.5 gi|389848605|ref|YP_006350842.1| - 0.078 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins Peptidase_S66C PF17676.1 gi|389848605|ref|YP_006350842.1| - 0.098 13.2 0.0 0.23 12.0 0.0 1.5 1 0 0 1 1 1 0 LD-carboxypeptidase C-terminal domain PEP-utilisers_N PF05524.13 gi|389848605|ref|YP_006350842.1| - 0.11 12.6 0.0 4.2 7.6 0.0 2.3 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal G8 PF10162.9 gi|389848608|ref|YP_006350845.1| - 5.5e-27 94.3 0.3 1.1e-26 93.3 0.3 1.5 1 0 0 1 1 1 1 G8 domain Beta_helix PF13229.6 gi|389848608|ref|YP_006350845.1| - 1.2e-09 38.2 13.4 1.7e-06 28.0 9.7 3.8 2 1 0 2 2 2 2 Right handed beta helix region TAT_signal PF10518.9 gi|389848608|ref|YP_006350845.1| - 0.0013 18.4 2.7 0.0026 17.5 2.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence EAR PF07897.11 gi|389848608|ref|YP_006350845.1| - 0.17 11.5 0.6 0.46 10.1 0.3 1.9 2 0 0 2 2 2 0 Ethylene-responsive binding factor-associated repression SPT_ssu-like PF11779.8 gi|389848610|ref|YP_006350847.1| - 3.4 7.4 7.8 2.8 7.6 0.9 2.1 1 1 1 2 2 2 0 Small subunit of serine palmitoyltransferase-like ABC_tran PF00005.27 gi|389848612|ref|YP_006350849.1| - 1.8e-35 122.4 0.0 2.9e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|389848612|ref|YP_006350849.1| - 8.1e-13 48.3 0.2 2.8e-12 46.6 0.1 2.0 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|389848612|ref|YP_006350849.1| - 1.2e-08 35.7 0.1 2.5e-07 31.4 0.0 3.1 3 1 1 4 4 3 1 MalK OB fold domain AAA_21 PF13304.6 gi|389848612|ref|YP_006350849.1| - 3.3e-08 33.7 0.0 0.013 15.3 0.0 3.0 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848612|ref|YP_006350849.1| - 0.00021 20.8 0.1 0.00058 19.4 0.1 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|389848612|ref|YP_006350849.1| - 0.00024 21.3 0.1 0.00085 19.6 0.0 2.0 2 0 0 2 2 2 1 TOBE domain Rad17 PF03215.15 gi|389848612|ref|YP_006350849.1| - 0.00085 19.3 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|389848612|ref|YP_006350849.1| - 0.0011 19.2 0.5 0.0038 17.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848612|ref|YP_006350849.1| - 0.002 18.5 0.6 0.0044 17.4 0.1 1.9 2 1 0 2 2 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848612|ref|YP_006350849.1| - 0.0033 17.3 0.1 0.0069 16.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase CysA_C_terminal PF17850.1 gi|389848612|ref|YP_006350849.1| - 0.0066 17.0 0.1 0.028 15.0 0.0 2.1 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA PF00004.29 gi|389848612|ref|YP_006350849.1| - 0.0068 16.8 0.0 0.048 14.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TAF PF02969.17 gi|389848612|ref|YP_006350849.1| - 0.013 15.7 0.0 0.048 13.8 0.0 2.0 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) AAA_25 PF13481.6 gi|389848612|ref|YP_006350849.1| - 0.022 14.4 0.1 0.4 10.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|389848612|ref|YP_006350849.1| - 0.023 14.4 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|389848612|ref|YP_006350849.1| - 0.038 13.7 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|389848612|ref|YP_006350849.1| - 0.04 13.6 0.0 0.095 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain MIT_C PF16565.5 gi|389848612|ref|YP_006350849.1| - 0.069 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT PhoH PF02562.16 gi|389848612|ref|YP_006350849.1| - 0.069 12.6 0.1 6.6 6.1 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_18 PF13238.6 gi|389848612|ref|YP_006350849.1| - 0.084 13.4 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|389848612|ref|YP_006350849.1| - 0.086 13.3 0.0 0.21 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|389848612|ref|YP_006350849.1| - 0.1 13.0 0.0 0.68 10.3 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.6 gi|389848612|ref|YP_006350849.1| - 0.13 12.5 0.1 0.39 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain Aminotran_5 PF00266.19 gi|389848613|ref|YP_006350850.1| - 2.9e-08 33.1 0.0 5.3e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V SelA PF03841.13 gi|389848613|ref|YP_006350850.1| - 4e-08 32.7 3.2 1.8e-06 27.2 3.2 2.9 2 1 0 2 2 2 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|389848613|ref|YP_006350850.1| - 1.2e-05 24.1 0.6 0.00021 19.9 0.0 2.0 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|389848613|ref|YP_006350850.1| - 0.00016 21.1 2.5 0.0003 20.2 2.5 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|389848613|ref|YP_006350850.1| - 0.0052 16.1 0.3 0.037 13.3 0.2 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase SepSecS PF05889.13 gi|389848613|ref|YP_006350850.1| - 0.014 14.1 0.0 0.038 12.7 0.0 1.7 2 0 0 2 2 2 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS NAD_binding_3 PF03447.16 gi|389848613|ref|YP_006350850.1| - 0.044 14.4 0.0 0.13 12.9 0.0 1.8 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Lipase_GDSL PF00657.22 gi|389848613|ref|YP_006350850.1| - 0.21 11.6 0.0 0.48 10.4 0.0 1.6 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase PIG-L PF02585.17 gi|389848614|ref|YP_006350851.1| - 1.3e-32 113.1 1.6 2.1e-32 112.5 1.6 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|389848614|ref|YP_006350851.1| - 0.0045 17.0 0.0 0.0067 16.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Tautomerase_3 PF14832.6 gi|389848614|ref|YP_006350851.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative oxalocrotonate tautomerase enzyme Ribonuc_L-PSP PF01042.21 gi|389848615|ref|YP_006350852.1| - 4.4e-42 142.9 0.2 4.9e-42 142.8 0.2 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Glyco_hydro_3 PF00933.21 gi|389848616|ref|YP_006350853.1| - 7.7e-101 337.6 0.0 9.9e-101 337.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|389848616|ref|YP_006350853.1| - 0.0005 20.1 0.0 0.0012 18.8 0.0 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain DUF4657 PF15552.6 gi|389848616|ref|YP_006350853.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4657) BPD_transp_1 PF00528.22 gi|389848617|ref|YP_006350854.1| - 1.3e-18 67.3 17.6 1.3e-18 67.3 17.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848618|ref|YP_006350855.1| - 1.6e-22 80.1 19.0 1.6e-22 80.1 19.0 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|389848619|ref|YP_006350856.1| - 1.5e-28 100.4 9.0 2.1e-28 99.9 9.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|389848619|ref|YP_006350856.1| - 5.6e-21 75.8 11.9 8.9e-21 75.1 11.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|389848619|ref|YP_006350856.1| - 0.00011 22.0 0.1 0.00026 20.8 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|389848619|ref|YP_006350856.1| - 0.00029 20.5 2.5 0.00051 19.8 2.5 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence E2R135 PF11570.8 gi|389848619|ref|YP_006350856.1| - 0.026 14.8 0.3 0.061 13.6 0.1 1.7 2 0 0 2 2 2 0 Coiled-coil receptor-binding R-domain of colicin E2 MR_MLE_C PF13378.6 gi|389848620|ref|YP_006350857.1| - 1.3e-55 188.3 0.0 1.6e-55 188.0 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|389848620|ref|YP_006350857.1| - 2.1e-25 89.2 0.0 8.2e-25 87.3 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PEP_mutase PF13714.6 gi|389848620|ref|YP_006350857.1| - 0.027 13.9 0.2 0.044 13.2 0.2 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase IclR PF01614.18 gi|389848621|ref|YP_006350858.1| - 1.5e-21 76.5 0.1 1.1e-20 73.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|389848621|ref|YP_006350858.1| - 7.8e-12 44.8 0.1 4.4e-11 42.4 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|389848621|ref|YP_006350858.1| - 8.3e-09 35.2 0.0 1.9e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389848621|ref|YP_006350858.1| - 2.7e-07 30.4 0.0 7e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389848621|ref|YP_006350858.1| - 5.9e-06 26.1 0.0 1.3e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389848621|ref|YP_006350858.1| - 9.3e-06 25.6 0.1 2.3e-05 24.4 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|389848621|ref|YP_006350858.1| - 2.1e-05 24.3 0.0 5.5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389848621|ref|YP_006350858.1| - 9.8e-05 21.8 0.0 0.00023 20.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|389848621|ref|YP_006350858.1| - 0.0018 18.2 0.0 0.0041 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848621|ref|YP_006350858.1| - 0.0022 17.9 0.0 0.0058 16.6 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389848621|ref|YP_006350858.1| - 0.0043 17.2 0.0 0.008 16.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|389848621|ref|YP_006350858.1| - 0.0071 16.7 0.0 0.017 15.5 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|389848621|ref|YP_006350858.1| - 0.01 15.8 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|389848621|ref|YP_006350858.1| - 0.017 15.6 0.0 0.051 14.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|389848621|ref|YP_006350858.1| - 0.022 14.9 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|389848621|ref|YP_006350858.1| - 0.037 13.8 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|389848621|ref|YP_006350858.1| - 0.058 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain IF2_N PF04760.15 gi|389848621|ref|YP_006350858.1| - 0.15 11.9 0.1 1.9 8.3 0.0 2.6 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Glu_dehyd_C PF16912.5 gi|389848622|ref|YP_006350859.1| - 1.3e-93 312.3 0.0 1.8e-93 311.9 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|389848622|ref|YP_006350859.1| - 4.1e-11 42.7 0.0 6.5e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|389848622|ref|YP_006350859.1| - 1.1e-05 25.3 0.0 2.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|389848622|ref|YP_006350859.1| - 0.00034 20.6 0.0 0.00059 19.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Phage_holin_1 PF04531.13 gi|389848622|ref|YP_006350859.1| - 0.11 13.0 0.1 0.23 12.0 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage holin PKD PF00801.20 gi|389848623|ref|YP_006350860.1| - 6.5e-10 38.7 5.0 6.5e-10 38.7 5.0 2.0 2 0 0 2 2 2 1 PKD domain TetR_C_33 PF13305.6 gi|389848623|ref|YP_006350860.1| - 0.16 12.8 0.2 0.34 11.7 0.2 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain PKD PF00801.20 gi|389848624|ref|YP_006350861.1| - 2.4e-13 49.7 3.9 5.4e-13 48.6 3.9 1.6 1 0 0 1 1 1 1 PKD domain Glyco_hydro_18 PF00704.28 gi|389848624|ref|YP_006350861.1| - 2.9e-06 27.3 0.0 6e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.14 gi|389848624|ref|YP_006350861.1| - 0.0017 18.8 1.1 0.0017 18.8 1.1 2.6 2 0 0 2 2 2 1 Carbohydrate binding domain DUF5011 PF16403.5 gi|389848624|ref|YP_006350861.1| - 0.0036 17.4 1.1 0.0063 16.6 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF5011) DUF4625 PF15418.6 gi|389848624|ref|YP_006350861.1| - 0.15 12.3 0.1 0.3 11.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4625) Glyco_hydro_18 PF00704.28 gi|389848625|ref|YP_006350862.1| - 1.4e-71 241.8 1.3 1.4e-71 241.8 1.3 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|389848625|ref|YP_006350862.1| - 1.6e-17 63.1 3.8 3.8e-17 61.9 3.8 1.7 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|389848625|ref|YP_006350862.1| - 5.1e-06 26.8 2.7 3.1e-05 24.3 2.7 2.4 1 0 0 1 1 1 1 Carbohydrate binding domain Glyco_hydro_18 PF00704.28 gi|389848626|ref|YP_006350863.1| - 5.5e-83 279.3 10.6 8.6e-83 278.6 10.6 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|389848626|ref|YP_006350863.1| - 5.2e-16 58.3 2.4 1.7e-15 56.6 2.4 1.9 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|389848626|ref|YP_006350863.1| - 3.6e-05 24.1 2.9 0.00016 22.1 2.9 2.2 1 0 0 1 1 1 1 Carbohydrate binding domain DUF3855 PF12967.7 gi|389848626|ref|YP_006350863.1| - 0.075 13.0 0.1 0.17 11.8 0.1 1.5 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3855) IucA_IucC PF04183.12 gi|389848627|ref|YP_006350864.1| - 5.7e-73 245.4 0.0 9.5e-73 244.7 0.0 1.4 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|389848627|ref|YP_006350864.1| - 6e-38 130.8 0.2 1.3e-37 129.8 0.2 1.6 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter K_oxygenase PF13434.6 gi|389848628|ref|YP_006350865.1| - 2.1e-108 362.5 0.0 2.6e-108 362.2 0.0 1.1 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.6 gi|389848628|ref|YP_006350865.1| - 8.8e-08 31.7 0.0 9.9e-06 25.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|389848628|ref|YP_006350865.1| - 0.0026 17.1 0.0 0.018 14.3 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase RL PF17797.1 gi|389848628|ref|YP_006350865.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 RL domain NAD_binding_9 PF13454.6 gi|389848628|ref|YP_006350865.1| - 0.051 13.6 0.0 0.49 10.4 0.1 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding SgrT PF15894.5 gi|389848628|ref|YP_006350865.1| - 0.14 12.1 0.8 0.79 9.7 0.6 2.2 2 0 0 2 2 2 0 Inhibitor of glucose uptake transporter SgrT Acetyltransf_8 PF13523.6 gi|389848629|ref|YP_006350866.1| - 1.6e-44 151.1 0.1 2e-44 150.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|389848629|ref|YP_006350866.1| - 7.4e-06 26.7 0.0 1.2e-05 26.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|389848629|ref|YP_006350866.1| - 0.01 16.0 0.0 0.013 15.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|389848629|ref|YP_006350866.1| - 0.14 12.6 0.0 0.27 11.7 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain IucA_IucC PF04183.12 gi|389848630|ref|YP_006350867.1| - 1.3e-54 185.3 0.0 1.8e-54 184.8 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|389848630|ref|YP_006350867.1| - 2.3e-36 125.6 0.1 4.7e-36 124.7 0.1 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Pyridoxal_deC PF00282.19 gi|389848631|ref|YP_006350868.1| - 2.1e-62 211.0 0.0 3.4e-62 210.3 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|389848631|ref|YP_006350868.1| - 4.6e-07 29.4 0.0 9.8e-07 28.3 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|389848631|ref|YP_006350868.1| - 2.3e-05 23.5 0.0 0.00012 21.2 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|389848632|ref|YP_006350869.1| - 3.7e-91 305.8 0.0 4.5e-91 305.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III p450 PF00067.22 gi|389848633|ref|YP_006350870.1| - 8.8e-84 281.9 0.0 1e-83 281.7 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 HTH_45 PF14947.6 gi|389848634|ref|YP_006350871.1| - 0.00013 21.9 0.0 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|389848634|ref|YP_006350871.1| - 0.00076 19.4 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|389848634|ref|YP_006350871.1| - 0.0055 16.5 0.0 0.016 15.0 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|389848634|ref|YP_006350871.1| - 0.074 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|389848634|ref|YP_006350871.1| - 0.083 12.8 0.0 0.2 11.5 0.0 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|389848634|ref|YP_006350871.1| - 0.11 12.6 0.0 0.54 10.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain UbiA PF01040.18 gi|389848635|ref|YP_006350872.1| - 6e-18 65.1 10.2 7.8e-18 64.7 10.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Tuberculin PF12198.8 gi|389848636|ref|YP_006350873.1| - 0.0016 18.5 0.1 0.0033 17.5 0.1 1.5 1 0 0 1 1 1 1 Theoretical tuberculin protein PASTA PF03793.19 gi|389848636|ref|YP_006350873.1| - 0.019 14.8 1.0 0.038 13.9 1.0 1.4 1 0 0 1 1 1 0 PASTA domain CBM60 PF16841.5 gi|389848636|ref|YP_006350873.1| - 0.11 12.9 0.3 0.23 11.9 0.3 1.6 1 1 0 1 1 1 0 Ca-dependent carbohydrate-binding module xylan-binding Inhibitor_I69 PF13734.6 gi|389848637|ref|YP_006350874.1| - 0.0029 18.0 0.0 0.01 16.3 0.0 1.9 2 0 0 2 2 2 1 Spi protease inhibitor LPD24 PF18839.1 gi|389848637|ref|YP_006350874.1| - 0.025 14.8 0.8 0.055 13.7 0.8 1.6 1 0 0 1 1 1 0 Large polyvalent protein associated domain 24 Peptidase_C10 PF01640.17 gi|389848637|ref|YP_006350874.1| - 0.43 10.9 5.7 1.1 9.6 0.0 3.0 1 1 1 3 3 3 0 Peptidase C10 family GATase_3 PF07685.14 gi|389848638|ref|YP_006350875.1| - 8.9e-33 113.5 0.0 1.2e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|389848638|ref|YP_006350875.1| - 3.6e-13 49.7 0.0 5.9e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|389848638|ref|YP_006350875.1| - 1.1e-10 41.7 0.0 0.00021 21.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|389848638|ref|YP_006350875.1| - 0.058 13.2 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family TP_methylase PF00590.20 gi|389848639|ref|YP_006350876.1| - 3.4e-33 115.4 0.1 4e-33 115.2 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|389848640|ref|YP_006350877.1| - 4.9e-52 176.5 1.5 5.6e-52 176.3 1.5 1.0 1 0 0 1 1 1 1 Precorrin-8X methylmutase MGS PF02142.22 gi|389848640|ref|YP_006350877.1| - 0.0085 16.3 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 MGS-like domain CobN-Mg_chel PF02514.16 gi|389848641|ref|YP_006350878.1| - 0 1263.5 0.0 0 1263.2 0.0 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|389848641|ref|YP_006350878.1| - 0.0028 17.4 0.0 0.0076 16.0 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain CheY-binding PF09078.11 gi|389848641|ref|YP_006350878.1| - 2.3 8.4 5.3 3.5 7.8 0.5 3.3 3 0 0 3 3 3 0 CheY binding AAA_lid_2 PF17863.1 gi|389848642|ref|YP_006350879.1| - 5.6e-23 80.6 8.5 2.3e-21 75.4 3.5 2.8 2 0 0 2 2 2 2 AAA lid domain VWA_2 PF13519.6 gi|389848642|ref|YP_006350879.1| - 1e-11 45.4 0.0 2.6e-11 44.1 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|389848642|ref|YP_006350879.1| - 1.9e-11 43.8 0.0 3.6e-08 33.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|389848642|ref|YP_006350879.1| - 1.2e-10 41.5 0.1 0.00029 20.8 0.0 3.4 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|389848642|ref|YP_006350879.1| - 4e-10 40.2 0.0 8e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.23 gi|389848642|ref|YP_006350879.1| - 5.6e-05 22.3 0.0 0.003 16.7 0.0 2.5 2 0 0 2 2 2 1 MCM P-loop domain VWA_CoxE PF05762.14 gi|389848642|ref|YP_006350879.1| - 0.00043 19.7 6.8 0.00092 18.7 6.8 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein Sigma54_activat PF00158.26 gi|389848642|ref|YP_006350879.1| - 0.0077 15.9 0.0 0.31 10.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|389848642|ref|YP_006350879.1| - 0.008 16.6 4.7 0.01 16.2 1.0 3.0 2 2 0 2 2 2 1 AAA ATPase domain VWA_3 PF13768.6 gi|389848642|ref|YP_006350879.1| - 0.097 12.6 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 von Willebrand factor type A domain AAA_22 PF13401.6 gi|389848642|ref|YP_006350879.1| - 0.13 12.5 0.2 2.3 8.5 0.2 2.8 2 1 0 2 2 2 0 AAA domain PQQ_2 PF13360.6 gi|389848643|ref|YP_006350880.1| - 1.9e-23 83.3 24.0 2e-12 47.2 4.8 2.6 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|389848643|ref|YP_006350880.1| - 1.3e-12 47.8 17.8 0.032 14.7 0.1 7.7 8 1 0 8 8 8 5 PQQ-like domain PQQ PF01011.21 gi|389848643|ref|YP_006350880.1| - 1.3e-09 37.5 2.5 0.18 11.8 0.1 7.2 7 0 0 7 7 7 2 PQQ enzyme repeat Ricin_B_lectin PF00652.22 gi|389848643|ref|YP_006350880.1| - 0.0079 16.4 0.0 0.1 12.8 0.0 2.6 2 1 0 2 2 2 1 Ricin-type beta-trefoil lectin domain NHL PF01436.21 gi|389848643|ref|YP_006350880.1| - 0.48 10.6 5.8 16 5.8 0.4 4.4 4 0 0 4 4 4 0 NHL repeat DUF3209 PF11483.8 gi|389848644|ref|YP_006350881.1| - 1.6e-54 183.6 1.9 1.8e-54 183.5 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) CbiX PF01903.17 gi|389848645|ref|YP_006350882.1| - 2.9e-47 159.4 0.0 7.8e-24 84.1 0.1 2.6 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|389848645|ref|YP_006350882.1| - 5.7e-10 39.2 0.2 1e-09 38.4 0.2 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|389848645|ref|YP_006350882.1| - 7.8e-08 31.9 0.0 6.3e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|389848645|ref|YP_006350882.1| - 3.5e-05 23.8 0.0 0.00013 21.9 0.0 1.9 2 0 0 2 2 2 1 Sucrase/ferredoxin-like Ferrochelatase PF00762.19 gi|389848645|ref|YP_006350882.1| - 0.0016 17.6 0.0 0.054 12.6 0.0 2.4 1 1 1 2 2 2 1 Ferrochelatase DUF1636 PF07845.11 gi|389848645|ref|YP_006350882.1| - 0.11 13.0 1.7 0.9 10.0 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1636) RNA_POL_M_15KD PF02150.16 gi|389848645|ref|YP_006350882.1| - 0.2 11.5 0.8 0.4 10.6 0.8 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Hom_end PF05204.14 gi|389848646|ref|YP_006350883.1| - 0.0061 16.7 0.1 0.054 13.7 0.0 2.0 2 0 0 2 2 2 1 Homing endonuclease LAGLIDADG_3 PF14528.6 gi|389848646|ref|YP_006350883.1| - 0.051 13.9 0.0 1.6 9.1 0.0 2.1 2 0 0 2 2 2 0 LAGLIDADG-like domain Ploopntkinase1 PF18748.1 gi|389848646|ref|YP_006350883.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 Fer4_15 PF13459.6 gi|389848647|ref|YP_006350884.1| - 3.4e-13 50.1 9.3 1.1e-12 48.5 9.3 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.11 gi|389848647|ref|YP_006350884.1| - 0.0065 16.5 0.2 0.19 11.8 0.2 2.1 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.6 gi|389848647|ref|YP_006350884.1| - 0.062 13.8 1.8 0.11 13.1 1.8 1.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|389848647|ref|YP_006350884.1| - 0.49 10.6 4.4 1.7 8.9 0.1 2.6 3 0 0 3 3 3 0 4Fe-4S binding domain TP_methylase PF00590.20 gi|389848648|ref|YP_006350885.1| - 1.8e-35 122.8 0.4 2.3e-35 122.5 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Macoilin PF09726.9 gi|389848648|ref|YP_006350885.1| - 0.08 11.5 3.3 0.085 11.4 3.3 1.1 1 0 0 1 1 1 0 Macoilin family Apt1 PF10351.9 gi|389848648|ref|YP_006350885.1| - 2.5 6.8 5.1 2.9 6.6 5.1 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain TP_methylase PF00590.20 gi|389848649|ref|YP_006350886.1| - 1.7e-41 142.5 0.0 2e-41 142.3 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|389848650|ref|YP_006350887.1| - 3.2e-28 97.5 0.0 8.3e-28 96.2 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|389848650|ref|YP_006350887.1| - 4.8e-23 81.9 0.0 1.4e-22 80.4 0.0 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|389848650|ref|YP_006350887.1| - 0.032 14.9 0.2 0.38 11.4 0.2 2.4 2 0 0 2 2 2 0 AIR synthase related protein, N-terminal domain TP_methylase PF00590.20 gi|389848651|ref|YP_006350888.1| - 1e-42 146.5 0.5 1.2e-42 146.3 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.11 gi|389848651|ref|YP_006350888.1| - 0.0018 18.9 0.0 0.0067 17.1 0.0 1.9 2 1 0 2 2 2 1 Regulator of ribonuclease activity B Radical_SAM PF04055.21 gi|389848651|ref|YP_006350888.1| - 0.06 13.7 0.0 0.13 12.6 0.0 1.6 1 1 0 1 1 1 0 Radical SAM superfamily DUF5066 PF16728.5 gi|389848651|ref|YP_006350888.1| - 0.17 11.2 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5066) TP_methylase PF00590.20 gi|389848652|ref|YP_006350889.1| - 3.7e-37 128.3 0.3 4.5e-37 128.0 0.3 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GSCFA PF08885.11 gi|389848652|ref|YP_006350889.1| - 0.13 11.9 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 GSCFA family Methyltransf_25 PF13649.6 gi|389848653|ref|YP_006350890.1| - 2.8e-06 27.9 0.1 4.3e-06 27.3 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389848653|ref|YP_006350890.1| - 7.7e-06 25.6 0.1 1.7e-05 24.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|389848653|ref|YP_006350890.1| - 2.4e-05 24.2 0.0 2.6e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|389848653|ref|YP_006350890.1| - 3.1e-05 23.8 0.0 4.3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|389848653|ref|YP_006350890.1| - 4.5e-05 24.0 0.1 7.3e-05 23.3 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|389848653|ref|YP_006350890.1| - 0.00043 20.0 0.0 0.00064 19.4 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.20 gi|389848653|ref|YP_006350890.1| - 0.00096 18.5 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|389848653|ref|YP_006350890.1| - 0.0017 18.3 0.0 0.0025 17.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|389848653|ref|YP_006350890.1| - 0.0071 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Histone methylation protein DOT1 PrmA PF06325.13 gi|389848653|ref|YP_006350890.1| - 0.0087 15.5 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|389848653|ref|YP_006350890.1| - 0.02 14.0 0.0 0.028 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|389848653|ref|YP_006350890.1| - 0.021 14.9 0.0 0.028 14.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_15 PF09445.10 gi|389848653|ref|YP_006350890.1| - 0.027 14.1 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|389848653|ref|YP_006350890.1| - 0.047 13.4 0.5 0.08 12.7 0.5 1.4 1 1 0 1 1 1 0 Met-10+ like-protein GATase_3 PF07685.14 gi|389848653|ref|YP_006350890.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CbiM PF01891.16 gi|389848654|ref|YP_006350891.1| - 1.7e-48 165.2 23.8 2.1e-48 164.9 23.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region CbiN PF02553.15 gi|389848655|ref|YP_006350892.1| - 1.8e-13 50.3 0.1 2.3e-13 49.9 0.1 1.1 1 0 0 1 1 1 1 Cobalt transport protein component CbiN CbiQ PF02361.16 gi|389848656|ref|YP_006350893.1| - 6.4e-39 133.8 9.8 6.4e-39 133.8 9.8 1.3 2 0 0 2 2 2 1 Cobalt transport protein ABC_tran PF00005.27 gi|389848657|ref|YP_006350894.1| - 4.1e-32 111.6 0.0 5.1e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848657|ref|YP_006350894.1| - 8.1e-13 48.8 0.0 3e-06 27.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848657|ref|YP_006350894.1| - 2.8e-08 33.5 0.0 8.7e-06 25.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|389848657|ref|YP_006350894.1| - 0.00018 21.2 0.0 0.00031 20.4 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|389848657|ref|YP_006350894.1| - 0.00098 19.7 0.0 0.0015 19.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|389848657|ref|YP_006350894.1| - 0.0014 18.5 0.0 0.0061 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|389848657|ref|YP_006350894.1| - 0.002 18.5 0.0 0.0048 17.3 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|389848657|ref|YP_006350894.1| - 0.0023 17.7 0.0 0.007 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|389848657|ref|YP_006350894.1| - 0.0035 17.0 0.0 0.0052 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|389848657|ref|YP_006350894.1| - 0.0076 16.5 0.0 0.18 12.1 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|389848657|ref|YP_006350894.1| - 0.0083 16.1 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase Zeta_toxin PF06414.12 gi|389848657|ref|YP_006350894.1| - 0.012 14.9 0.0 0.02 14.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|389848657|ref|YP_006350894.1| - 0.014 15.6 0.0 0.043 14.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF4350 PF14258.6 gi|389848657|ref|YP_006350894.1| - 0.031 14.7 0.3 3.1 8.3 0.0 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4350) MukB PF04310.12 gi|389848657|ref|YP_006350894.1| - 0.072 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal NACHT PF05729.12 gi|389848657|ref|YP_006350894.1| - 0.09 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain UPF0139 PF03669.13 gi|389848658|ref|YP_006350895.1| - 0.36 10.7 1.1 0.91 9.4 0.4 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0139) MccV PF17508.2 gi|389848658|ref|YP_006350895.1| - 1.2 9.7 2.9 13 6.4 0.1 2.4 2 0 0 2 2 2 0 Microcin V bacteriocin SARS_X4 PF08779.10 gi|389848660|ref|YP_006350897.1| - 0.18 12.0 0.0 0.19 11.9 0.0 1.1 1 0 0 1 1 1 0 SARS coronavirus X4 like AAA_26 PF13500.6 gi|389848661|ref|YP_006350898.1| - 1.9e-36 125.8 0.0 2.2e-36 125.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|389848661|ref|YP_006350898.1| - 1.2e-07 31.8 0.0 2.1e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|389848661|ref|YP_006350898.1| - 0.00011 21.6 0.5 0.0019 17.5 0.3 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_C) P-loop domain Aminotran_1_2 PF00155.21 gi|389848662|ref|YP_006350899.1| - 1.3e-56 192.4 0.0 1.5e-56 192.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|389848662|ref|YP_006350899.1| - 0.00022 19.9 0.0 0.00031 19.4 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|389848662|ref|YP_006350899.1| - 0.011 15.1 1.4 0.028 13.7 1.4 1.8 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Peripla_BP_2 PF01497.18 gi|389848662|ref|YP_006350899.1| - 0.026 14.1 0.0 0.092 12.3 0.0 1.8 2 0 0 2 2 2 0 Periplasmic binding protein Aminotran_5 PF00266.19 gi|389848662|ref|YP_006350899.1| - 0.058 12.3 0.0 0.074 12.0 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V RTC PF01137.21 gi|389848662|ref|YP_006350899.1| - 0.098 11.8 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 RNA 3'-terminal phosphate cyclase ELFV_dehydrog PF00208.21 gi|389848663|ref|YP_006350900.1| - 0.0027 17.5 0.5 0.0075 16.0 0.1 1.9 1 1 1 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|389848663|ref|YP_006350900.1| - 0.026 15.3 0.6 12 6.7 0.0 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold BATS PF06968.13 gi|389848664|ref|YP_006350901.1| - 8.8e-16 57.8 0.0 2e-15 56.7 0.0 1.6 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 gi|389848664|ref|YP_006350901.1| - 1.2e-15 58.3 0.3 8.7e-13 49.0 0.1 2.2 2 0 0 2 2 2 2 Radical SAM superfamily adh_short PF00106.25 gi|389848665|ref|YP_006350902.1| - 1.1e-60 204.5 0.2 1.3e-60 204.2 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|389848665|ref|YP_006350902.1| - 1.1e-45 156.1 0.8 3.3e-45 154.5 0.8 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|389848665|ref|YP_006350902.1| - 3.7e-14 53.1 0.1 4.8e-14 52.7 0.1 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|389848665|ref|YP_006350902.1| - 4.4e-08 33.2 1.4 6.4e-08 32.7 1.4 1.4 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|389848665|ref|YP_006350902.1| - 2.7e-07 30.3 0.0 4.6e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|389848665|ref|YP_006350902.1| - 5.4e-07 29.0 0.3 6.9e-07 28.7 0.3 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Sacchrp_dh_NADP PF03435.18 gi|389848665|ref|YP_006350902.1| - 1.6e-05 25.2 0.7 3.9e-05 23.9 0.2 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|389848665|ref|YP_006350902.1| - 0.0021 17.9 0.1 0.0032 17.4 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|389848665|ref|YP_006350902.1| - 0.0043 17.3 0.9 0.01 16.1 0.2 1.9 2 0 0 2 2 2 1 TrkA-N domain Glyco_trans_4_4 PF13579.6 gi|389848665|ref|YP_006350902.1| - 0.0052 17.2 1.4 0.089 13.2 0.6 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain GDP_Man_Dehyd PF16363.5 gi|389848665|ref|YP_006350902.1| - 0.0065 15.9 0.0 0.014 14.8 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|389848665|ref|YP_006350902.1| - 0.007 15.5 0.9 0.0094 15.1 0.9 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Glyco_transf_4 PF13439.6 gi|389848665|ref|YP_006350902.1| - 0.0076 16.3 0.0 1.4 8.9 0.0 2.5 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Shikimate_DH PF01488.20 gi|389848665|ref|YP_006350902.1| - 0.0099 15.9 0.5 0.04 14.0 0.1 2.2 2 1 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase DFP PF04127.15 gi|389848665|ref|YP_006350902.1| - 0.013 15.4 0.7 0.021 14.7 0.7 1.5 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_Gly3P_dh_N PF01210.23 gi|389848665|ref|YP_006350902.1| - 0.032 14.2 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|389848665|ref|YP_006350902.1| - 0.033 13.8 0.0 0.054 13.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.19 gi|389848665|ref|YP_006350902.1| - 0.034 13.5 0.2 0.27 10.5 0.0 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Glyco_transf_5 PF08323.11 gi|389848665|ref|YP_006350902.1| - 0.037 13.7 0.0 1.8 8.2 0.0 2.3 1 1 0 2 2 2 0 Starch synthase catalytic domain F420_oxidored PF03807.17 gi|389848665|ref|YP_006350902.1| - 0.037 14.6 0.1 0.19 12.3 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GAPES2 PF17156.4 gi|389848665|ref|YP_006350902.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain Herpes_capsid PF06112.11 gi|389848666|ref|YP_006350903.1| - 0.48 10.5 6.7 0.81 9.7 6.7 1.3 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein ABC2_membrane_2 PF12679.7 gi|389848667|ref|YP_006350904.1| - 6.2e-37 127.4 21.0 3.1e-36 125.1 21.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389848667|ref|YP_006350904.1| - 3.6e-08 32.9 21.0 3.6e-08 32.9 21.0 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848667|ref|YP_006350904.1| - 3.2e-07 30.1 16.2 9e-07 28.7 15.7 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389848667|ref|YP_006350904.1| - 4.4e-06 26.8 10.7 4.4e-06 26.8 10.7 2.5 1 1 0 2 2 2 1 ABC-2 family transporter protein PDR_CDR PF06422.12 gi|389848667|ref|YP_006350904.1| - 0.028 14.3 2.5 0.12 12.3 0.1 2.5 2 0 0 2 2 2 0 CDR ABC transporter ABC_tran PF00005.27 gi|389848668|ref|YP_006350905.1| - 7.2e-29 101.1 0.0 1.5e-28 100.0 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389848668|ref|YP_006350905.1| - 1.4e-09 38.2 0.2 0.00012 22.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389848668|ref|YP_006350905.1| - 3e-07 31.1 0.4 1.3e-06 29.1 0.3 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|389848668|ref|YP_006350905.1| - 0.007 16.9 0.1 0.018 15.6 0.1 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|389848668|ref|YP_006350905.1| - 0.0078 15.7 0.1 2.3 7.6 0.0 2.7 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|389848668|ref|YP_006350905.1| - 0.016 14.9 0.0 0.037 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|389848668|ref|YP_006350905.1| - 0.029 14.1 0.0 0.062 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|389848668|ref|YP_006350905.1| - 0.045 13.7 0.0 0.09 12.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|389848668|ref|YP_006350905.1| - 0.081 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|389848668|ref|YP_006350905.1| - 0.2 11.1 0.0 0.43 10.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region CinA PF02464.17 gi|389848669|ref|YP_006350906.1| - 0.061 12.9 0.5 0.11 12.1 0.5 1.4 1 0 0 1 1 1 0 Competence-damaged protein YkyA PF10368.9 gi|389848669|ref|YP_006350906.1| - 0.07 12.8 0.7 0.18 11.5 0.2 1.9 3 0 0 3 3 3 0 Putative cell-wall binding lipoprotein OmpH PF03938.14 gi|389848669|ref|YP_006350906.1| - 1.3 9.3 4.8 0.66 10.3 1.7 2.1 2 1 0 2 2 2 0 Outer membrane protein (OmpH-like) NosL PF05573.12 gi|389848670|ref|YP_006350907.1| - 1.2e-39 135.6 0.1 1.5e-39 135.4 0.1 1.1 1 0 0 1 1 1 1 NosL ABC2_membrane_2 PF12679.7 gi|389848672|ref|YP_006350909.1| - 7.1e-24 84.6 24.6 2.5e-21 76.2 24.6 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848672|ref|YP_006350909.1| - 0.00023 20.8 4.9 0.00023 20.8 4.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389848673|ref|YP_006350910.1| - 1.7e-30 106.3 0.0 2.7e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848673|ref|YP_006350910.1| - 3.6e-13 50.0 0.8 2.1e-08 34.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389848673|ref|YP_006350910.1| - 0.00014 22.5 0.0 0.00026 21.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|389848673|ref|YP_006350910.1| - 0.0039 17.6 0.2 0.014 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|389848673|ref|YP_006350910.1| - 0.015 14.5 0.0 0.033 13.5 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin MMR_HSR1 PF01926.23 gi|389848673|ref|YP_006350910.1| - 0.016 15.3 0.0 0.034 14.2 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|389848673|ref|YP_006350910.1| - 0.047 13.4 0.7 0.089 12.5 0.7 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|389848673|ref|YP_006350910.1| - 0.07 13.0 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 RsgA GTPase ATP-synt_ab PF00006.25 gi|389848673|ref|YP_006350910.1| - 0.11 12.1 0.1 6.4 6.4 0.0 2.3 1 1 1 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PIF1 PF05970.14 gi|389848673|ref|YP_006350910.1| - 0.27 10.4 0.2 0.41 9.8 0.2 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_23 PF13476.6 gi|389848673|ref|YP_006350910.1| - 0.37 11.3 0.6 0.58 10.6 0.6 1.2 1 0 0 1 1 1 0 AAA domain NosD PF05048.13 gi|389848674|ref|YP_006350911.1| - 1.6e-51 174.9 22.5 8.9e-48 162.6 15.6 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|389848674|ref|YP_006350911.1| - 5.3e-27 94.6 25.5 1.3e-19 70.6 9.3 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.11 gi|389848674|ref|YP_006350911.1| - 9e-05 21.9 12.5 0.0016 17.8 0.2 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) Pectate_lyase_3 PF12708.7 gi|389848674|ref|YP_006350911.1| - 0.047 13.5 16.9 0.027 14.3 5.9 2.7 1 1 0 2 2 2 0 Pectate lyase superfamily protein Gemini_mov PF01708.16 gi|389848675|ref|YP_006350912.1| - 0.091 12.5 2.4 0.27 11.0 0.0 2.5 2 1 0 2 2 2 0 Geminivirus putative movement protein nos_propeller_2 PF18793.1 gi|389848676|ref|YP_006350913.1| - 1.8e-32 111.4 0.1 7e-32 109.6 0.1 2.1 1 0 0 1 1 1 1 Nitrous oxide reductase propeller repeat 2 nos_propeller PF18764.1 gi|389848676|ref|YP_006350913.1| - 5.1e-28 96.8 0.7 3.8e-26 90.8 0.2 3.3 3 0 0 3 3 3 1 Nitrous oxide reductase propeller repeat TAT_signal PF10518.9 gi|389848676|ref|YP_006350913.1| - 7.2e-08 32.0 3.1 1.6e-07 30.8 3.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|389848676|ref|YP_006350913.1| - 1.1e-05 25.5 0.0 3e-05 24.1 0.0 1.8 1 0 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.20 gi|389848676|ref|YP_006350913.1| - 2.2e-05 24.3 0.0 7.5e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Copper-bind PF00127.20 gi|389848677|ref|YP_006350914.1| - 1.6e-18 67.0 0.5 3.5e-18 65.9 0.5 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389848677|ref|YP_006350914.1| - 2.3e-05 24.4 1.0 0.00051 20.1 1.0 2.1 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|389848677|ref|YP_006350914.1| - 0.34 10.8 2.2 1.3 9.0 2.2 2.0 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence CPP1-like PF11833.8 gi|389848678|ref|YP_006350915.1| - 0.059 13.0 4.1 0.063 12.9 4.1 1.1 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2249 PF10006.9 gi|389848680|ref|YP_006350917.1| - 1.6e-21 75.9 0.0 1.9e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) YrhK PF14145.6 gi|389848681|ref|YP_006350918.1| - 0.037 13.9 0.3 0.037 13.9 0.3 2.2 2 0 0 2 2 2 0 YrhK-like protein COX1 PF00115.20 gi|389848681|ref|YP_006350918.1| - 0.17 10.7 31.9 0.047 12.5 5.9 3.1 3 0 0 3 3 3 0 Cytochrome C and Quinol oxidase polypeptide I Oxidored_molyb PF00174.19 gi|389848682|ref|YP_006350919.1| - 2e-14 53.5 0.0 6.5e-14 51.9 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain ParA PF10609.9 gi|389848683|ref|YP_006350920.1| - 3.2e-62 210.2 0.0 4.4e-62 209.7 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|389848683|ref|YP_006350920.1| - 1.6e-16 59.9 0.2 3.4e-16 58.9 0.2 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) FeS_assembly_P PF01883.19 gi|389848683|ref|YP_006350920.1| - 1.6e-14 53.8 1.1 1.6e-14 53.8 1.1 2.6 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|389848683|ref|YP_006350920.1| - 6.5e-12 45.6 0.0 1.6e-11 44.4 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|389848683|ref|YP_006350920.1| - 2.3e-06 27.6 0.5 0.0027 17.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.6 gi|389848683|ref|YP_006350920.1| - 9.6e-06 25.6 0.3 0.00023 21.1 0.4 2.1 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|389848683|ref|YP_006350920.1| - 0.00054 19.2 2.5 0.13 11.4 2.6 2.4 2 0 0 2 2 2 2 Anion-transporting ATPase VirC1 PF07015.11 gi|389848683|ref|YP_006350920.1| - 0.004 16.5 0.2 0.0071 15.7 0.2 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|389848683|ref|YP_006350920.1| - 0.0089 15.6 1.1 0.053 13.1 0.2 2.3 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|389848683|ref|YP_006350920.1| - 0.012 14.9 0.8 0.021 14.1 0.1 1.7 2 0 0 2 2 2 0 ATPase MipZ CBP_BcsQ PF06564.12 gi|389848683|ref|YP_006350920.1| - 0.11 12.0 0.3 0.56 9.6 0.3 2.0 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ HEAT_2 PF13646.6 gi|389848684|ref|YP_006350921.1| - 1e-23 83.5 18.5 3.4e-13 49.8 2.7 3.6 1 1 3 4 4 4 4 HEAT repeats HEAT PF02985.22 gi|389848684|ref|YP_006350921.1| - 1.7e-10 40.2 10.8 0.42 11.0 0.0 6.3 6 0 0 6 6 6 5 HEAT repeat HEAT_EZ PF13513.6 gi|389848684|ref|YP_006350921.1| - 4.7e-05 23.8 14.4 0.021 15.3 2.1 5.4 4 2 2 6 6 6 2 HEAT-like repeat Cnd1 PF12717.7 gi|389848684|ref|YP_006350921.1| - 0.0003 20.9 0.6 0.16 12.0 0.1 3.7 1 1 3 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|389848684|ref|YP_006350921.1| - 0.025 13.1 0.4 0.13 10.8 0.0 2.0 2 0 0 2 2 2 0 Adaptin N terminal region HEAT_PBS PF03130.16 gi|389848684|ref|YP_006350921.1| - 0.19 12.5 14.5 15 6.6 0.0 5.7 6 0 0 6 6 6 0 PBS lyase HEAT-like repeat YtpI PF14007.6 gi|389848685|ref|YP_006350922.1| - 1.7 8.8 4.3 11 6.2 0.0 2.9 1 1 1 2 2 2 0 YtpI-like protein Nitrate_red_del PF02613.15 gi|389848686|ref|YP_006350923.1| - 1.8e-09 37.7 0.9 5.2e-08 33.0 0.6 2.4 1 1 1 2 2 2 2 Nitrate reductase delta subunit DUF2092 PF09865.9 gi|389848686|ref|YP_006350923.1| - 0.0074 15.7 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Predicted periplasmic protein (DUF2092) MID_pPIWI_RE PF18157.1 gi|389848686|ref|YP_006350923.1| - 0.018 15.4 0.0 0.043 14.1 0.0 1.6 2 0 0 2 2 2 0 MID domain of pPIWI_RE EB_dh PF09459.10 gi|389848687|ref|YP_006350924.1| - 1e-29 104.3 3.3 3.9e-14 53.2 0.7 2.1 1 1 1 2 2 2 2 Ethylbenzene dehydrogenase DUF4179 PF13786.6 gi|389848687|ref|YP_006350924.1| - 0.2 12.1 0.1 0.2 12.1 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Fer4_11 PF13247.6 gi|389848688|ref|YP_006350925.1| - 2e-29 101.7 6.8 2e-29 101.7 6.8 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|389848688|ref|YP_006350925.1| - 4.9e-11 42.6 18.5 2e-05 24.6 7.9 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|389848688|ref|YP_006350925.1| - 1.6e-10 41.4 16.4 5.2e-05 23.7 7.2 3.5 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|389848688|ref|YP_006350925.1| - 1.1e-07 31.9 18.6 0.016 15.4 0.3 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|389848688|ref|YP_006350925.1| - 6.6e-05 23.6 4.1 0.25 12.1 0.0 3.8 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.7 gi|389848688|ref|YP_006350925.1| - 0.00022 21.1 29.5 0.002 18.1 2.3 4.0 5 0 0 5 5 3 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|389848688|ref|YP_006350925.1| - 0.00039 20.9 19.7 0.13 12.8 0.1 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|389848688|ref|YP_006350925.1| - 0.00075 19.2 29.7 0.014 15.2 2.7 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|389848688|ref|YP_006350925.1| - 0.00085 19.3 26.4 0.011 15.8 0.9 4.2 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|389848688|ref|YP_006350925.1| - 0.016 15.7 1.3 0.016 15.7 1.3 4.1 5 0 0 5 5 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|389848688|ref|YP_006350925.1| - 0.016 15.3 23.1 0.03 14.5 1.7 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|389848688|ref|YP_006350925.1| - 0.12 12.9 13.4 0.21 12.2 0.1 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|389848688|ref|YP_006350925.1| - 0.42 11.6 24.4 0.21 12.6 1.4 4.0 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|389848688|ref|YP_006350925.1| - 0.56 11.3 34.9 0.11 13.4 5.8 4.2 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|389848688|ref|YP_006350925.1| - 0.62 10.6 21.0 1.2 9.7 10.9 4.0 2 1 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|389848689|ref|YP_006350926.1| - 4.2e-93 312.7 0.0 6.2e-93 312.1 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|389848689|ref|YP_006350926.1| - 1.3e-20 73.5 0.0 2.9e-20 72.3 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|389848689|ref|YP_006350926.1| - 0.042 13.8 0.4 0.093 12.7 0.4 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain DUF3040 PF11239.8 gi|389848690|ref|YP_006350927.1| - 0.15 12.4 2.7 0.17 12.1 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Cytochrom_B_N_2 PF13631.6 gi|389848691|ref|YP_006350928.1| - 3.8e-45 153.9 0.7 3.8e-45 153.9 0.7 2.9 3 2 1 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|389848691|ref|YP_006350928.1| - 6.2e-30 104.4 8.8 6.2e-30 104.4 8.8 3.1 3 1 0 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|389848691|ref|YP_006350928.1| - 8.2e-07 29.3 0.9 3.9e-06 27.1 0.9 2.2 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|389848691|ref|YP_006350928.1| - 0.0081 16.7 7.2 0.0081 16.7 7.2 3.9 4 1 0 4 4 4 1 Domain of unknown function (DUF4405) Mntp PF02659.15 gi|389848691|ref|YP_006350928.1| - 0.13 12.0 0.1 0.13 12.0 0.1 3.7 5 1 1 6 6 6 0 Putative manganese efflux pump OppC_N PF12911.7 gi|389848691|ref|YP_006350928.1| - 0.19 11.7 1.9 6.5 6.8 0.3 3.0 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF4516 PF14990.6 gi|389848691|ref|YP_006350928.1| - 0.3 10.8 1.3 0.85 9.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) Rieske PF00355.26 gi|389848692|ref|YP_006350929.1| - 1.4e-11 44.2 0.0 2e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TetR_N PF00440.23 gi|389848694|ref|YP_006350931.1| - 1.1e-10 41.1 0.2 2e-10 40.3 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.6 gi|389848694|ref|YP_006350931.1| - 1.7e-09 37.9 0.7 5.2e-09 36.3 0.1 2.1 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_C_27 PF17935.1 gi|389848694|ref|YP_006350931.1| - 3.2e-06 27.1 0.2 2.2e-05 24.4 0.0 2.3 3 0 0 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|389848694|ref|YP_006350931.1| - 0.00023 21.4 0.1 0.0017 18.6 0.0 2.4 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|389848694|ref|YP_006350931.1| - 0.00066 19.7 0.0 0.0016 18.5 0.0 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_10 PF16295.5 gi|389848694|ref|YP_006350931.1| - 0.0038 17.5 0.0 0.0078 16.5 0.0 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|389848694|ref|YP_006350931.1| - 0.037 14.1 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Hemerythrin PF01814.23 gi|389848694|ref|YP_006350931.1| - 0.33 11.6 4.2 0.63 10.7 4.2 1.6 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain MFS_1 PF07690.16 gi|389848695|ref|YP_006350932.1| - 2.3e-57 194.6 43.7 1e-33 116.7 16.6 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|389848695|ref|YP_006350932.1| - 7.2e-17 61.4 23.0 3.6e-09 36.0 7.0 3.2 1 1 2 3 3 3 3 Sugar (and other) transporter MFS_1_like PF12832.7 gi|389848695|ref|YP_006350932.1| - 5.4e-14 51.8 16.9 1.8e-08 33.7 3.9 3.4 2 2 2 4 4 4 3 MFS_1 like family MFS_3 PF05977.13 gi|389848695|ref|YP_006350932.1| - 0.00027 19.5 15.9 0.0041 15.6 5.4 2.5 1 1 1 2 2 2 2 Transmembrane secretion effector MFS_4 PF06779.14 gi|389848695|ref|YP_006350932.1| - 0.0007 19.0 24.7 0.001 18.5 24.7 1.3 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF2238 PF09997.9 gi|389848696|ref|YP_006350933.1| - 0.0033 17.2 0.6 0.0049 16.7 0.6 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF4135 PF13575.6 gi|389848697|ref|YP_006350934.1| - 7.2e-93 311.9 0.0 1e-92 311.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.13 gi|389848697|ref|YP_006350934.1| - 3.9e-57 193.4 0.0 5e-57 193.1 0.0 1.1 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein Glyco_hydro_127 PF07944.12 gi|389848697|ref|YP_006350934.1| - 3.2e-05 22.7 0.0 0.0053 15.3 0.0 2.2 2 0 0 2 2 2 2 Beta-L-arabinofuranosidase, GH127 Glyco_hydro_47 PF01532.20 gi|389848697|ref|YP_006350934.1| - 0.0039 16.2 0.0 0.015 14.3 0.0 1.8 1 1 1 2 2 2 1 Glycosyl hydrolase family 47 Glyco_hydro_76 PF03663.14 gi|389848697|ref|YP_006350934.1| - 0.0066 16.0 0.0 2.5 7.5 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 GlcNAc_2-epim PF07221.11 gi|389848697|ref|YP_006350934.1| - 0.027 13.7 0.1 0.93 8.7 0.0 2.3 2 0 0 2 2 2 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) MCRA PF06100.11 gi|389848698|ref|YP_006350935.1| - 2.1e-210 699.7 0.0 2.4e-210 699.5 0.0 1.0 1 0 0 1 1 1 1 MCRA family NAD_binding_8 PF13450.6 gi|389848698|ref|YP_006350935.1| - 2.1e-06 27.9 0.1 4.3e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|389848698|ref|YP_006350935.1| - 5e-06 26.3 1.3 3.9e-05 23.4 1.3 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|389848698|ref|YP_006350935.1| - 0.28 10.2 1.0 18 4.3 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain DUF4135 PF13575.6 gi|389848701|ref|YP_006350938.1| - 1.7e-94 317.3 0.0 3.2e-94 316.3 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4135) LANC_like PF05147.13 gi|389848701|ref|YP_006350938.1| - 5.3e-52 176.5 0.0 7.1e-52 176.1 0.0 1.2 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein ABC2_membrane_3 PF12698.7 gi|389848702|ref|YP_006350939.1| - 3.7e-06 26.3 23.1 0.00059 19.1 23.1 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|389848702|ref|YP_006350939.1| - 0.0024 17.9 5.4 0.0024 17.9 5.4 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|389848702|ref|YP_006350939.1| - 0.3 10.3 18.9 0.025 13.8 12.3 2.4 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|389848703|ref|YP_006350940.1| - 1.2e-30 106.8 0.0 2.1e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848703|ref|YP_006350940.1| - 8.6e-12 45.5 1.4 5.4e-08 33.0 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|389848703|ref|YP_006350940.1| - 3.9e-05 24.3 0.4 0.00012 22.7 0.1 2.1 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) AAA_22 PF13401.6 gi|389848703|ref|YP_006350940.1| - 0.00048 20.4 1.5 0.0037 17.5 0.6 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|389848703|ref|YP_006350940.1| - 0.00099 18.8 0.2 0.0022 17.7 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|389848703|ref|YP_006350940.1| - 0.0044 16.8 0.1 0.028 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|389848703|ref|YP_006350940.1| - 0.005 16.6 1.0 0.73 9.5 0.0 2.4 2 1 0 3 3 3 1 AAA ATPase domain AAA_14 PF13173.6 gi|389848703|ref|YP_006350940.1| - 0.0066 16.5 0.4 1.1 9.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|389848703|ref|YP_006350940.1| - 0.008 16.7 2.2 0.016 15.7 1.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848703|ref|YP_006350940.1| - 0.025 15.0 0.1 0.06 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|389848703|ref|YP_006350940.1| - 0.034 13.8 0.2 0.078 12.6 0.2 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF1383 PF07134.11 gi|389848703|ref|YP_006350940.1| - 0.044 12.9 0.4 0.069 12.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1383) SMC_N PF02463.19 gi|389848703|ref|YP_006350940.1| - 0.064 12.7 5.1 0.74 9.2 2.0 2.5 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|389848703|ref|YP_006350940.1| - 0.085 12.4 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389848703|ref|YP_006350940.1| - 0.097 12.4 0.4 0.2 11.3 0.4 1.6 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389848703|ref|YP_006350940.1| - 0.13 11.4 1.9 1.3 8.1 0.1 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.29 gi|389848703|ref|YP_006350940.1| - 0.13 12.6 2.7 1.9 8.9 2.2 2.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0228 PF05727.11 gi|389848703|ref|YP_006350940.1| - 0.15 11.9 0.9 3.6 7.4 0.2 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0228) AAA_19 PF13245.6 gi|389848703|ref|YP_006350940.1| - 0.15 12.4 0.5 0.3 11.4 0.3 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|389848703|ref|YP_006350940.1| - 0.57 10.3 3.8 2.7 8.1 1.5 2.8 1 1 1 2 2 2 0 50S ribosome-binding GTPase PKD PF00801.20 gi|389848704|ref|YP_006350941.1| - 1.5e-06 27.9 3.8 1.5e-06 27.9 3.8 2.0 2 0 0 2 2 2 1 PKD domain CBM_5_12 PF02839.14 gi|389848704|ref|YP_006350941.1| - 0.00076 19.9 4.1 0.003 18.1 4.1 2.1 1 0 0 1 1 1 1 Carbohydrate binding domain PKD_3 PF16820.5 gi|389848704|ref|YP_006350941.1| - 0.0068 16.1 0.6 0.019 14.7 0.6 1.7 1 0 0 1 1 1 1 PKD-like domain Ig_3 PF13927.6 gi|389848704|ref|YP_006350941.1| - 0.034 14.8 1.6 0.23 12.1 0.7 2.5 2 0 0 2 2 2 0 Immunoglobulin domain GAT PF03127.14 gi|389848704|ref|YP_006350941.1| - 0.069 13.5 0.1 0.13 12.6 0.1 1.4 1 0 0 1 1 1 0 GAT domain FctA PF12892.7 gi|389848704|ref|YP_006350941.1| - 0.092 13.6 5.2 0.29 12.0 5.2 1.9 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain SusE PF14292.6 gi|389848704|ref|YP_006350941.1| - 6.4 7.1 9.6 3 8.1 6.7 1.9 2 0 0 2 2 2 0 SusE outer membrane protein HisKA_7TM PF16927.5 gi|389848706|ref|YP_006350943.1| - 5.6e-36 124.6 17.1 7.1e-36 124.3 17.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|389848706|ref|YP_006350943.1| - 6.7e-18 65.2 0.0 1.6e-17 64.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|389848706|ref|YP_006350943.1| - 1.8e-06 27.8 0.0 1.3e-05 25.1 0.0 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|389848706|ref|YP_006350943.1| - 2e-06 27.8 0.0 4.5e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_4 PF08448.10 gi|389848706|ref|YP_006350943.1| - 5.1e-06 26.7 1.4 0.00024 21.3 0.7 2.8 2 1 0 2 2 2 1 PAS fold PAS PF00989.25 gi|389848706|ref|YP_006350943.1| - 0.00017 21.6 1.7 0.0072 16.3 0.0 2.9 2 1 0 3 3 3 1 PAS fold PAS_9 PF13426.7 gi|389848706|ref|YP_006350943.1| - 0.00018 21.7 0.5 0.002 18.3 0.2 2.8 2 1 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.6 gi|389848706|ref|YP_006350943.1| - 0.00027 20.8 0.0 0.00066 19.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|389848706|ref|YP_006350943.1| - 0.0023 17.9 1.3 0.0045 17.0 1.3 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HisKA_4TM PF16926.5 gi|389848706|ref|YP_006350943.1| - 0.0072 15.9 0.1 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|389848706|ref|YP_006350943.1| - 0.015 15.5 2.1 1.4 9.2 0.1 3.2 2 2 1 3 3 3 0 PAS fold PAS_10 PF13596.6 gi|389848706|ref|YP_006350943.1| - 0.11 13.1 0.1 0.56 10.8 0.1 2.2 1 1 0 1 1 1 0 PAS domain DUF547 PF04784.14 gi|389848707|ref|YP_006350944.1| - 6.8e-28 97.2 0.0 1e-27 96.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF547 HTH_10 PF04967.12 gi|389848708|ref|YP_006350945.1| - 2.3e-16 59.3 0.0 3.6e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HrcA_DNA-bdg PF03444.15 gi|389848708|ref|YP_006350945.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DDE_Tnp_IS240 PF13610.6 gi|389848709|ref|YP_006350946.1| - 3.4e-06 27.3 0.0 3.5e-06 27.3 0.0 1.0 1 0 0 1 1 1 1 DDE domain rve_3 PF13683.6 gi|389848710|ref|YP_006350947.1| - 0.00019 21.2 0.0 0.00021 21.0 0.0 1.0 1 0 0 1 1 1 1 Integrase core domain DUF2384 PF09722.10 gi|389848710|ref|YP_006350947.1| - 0.06 13.4 0.0 0.097 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2384) Methyltransf_2 PF00891.18 gi|389848711|ref|YP_006350948.1| - 3.2e-20 72.3 0.0 4.3e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_12 PF08242.12 gi|389848711|ref|YP_006350948.1| - 2e-08 34.9 0.0 4e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Dimerisation2 PF16864.5 gi|389848711|ref|YP_006350948.1| - 7.4e-08 32.3 0.1 1.8e-07 31.0 0.1 1.6 1 0 0 1 1 1 1 Dimerisation domain Methyltransf_23 PF13489.6 gi|389848711|ref|YP_006350948.1| - 2.3e-07 30.8 0.0 7.7e-07 29.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|389848711|ref|YP_006350948.1| - 1e-06 29.3 0.0 2.1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|389848711|ref|YP_006350948.1| - 0.0011 18.5 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Dimerisation PF08100.11 gi|389848711|ref|YP_006350948.1| - 0.0014 18.6 0.1 0.0071 16.3 0.0 2.2 3 0 0 3 3 3 1 Dimerisation domain Methyltransf_11 PF08241.12 gi|389848711|ref|YP_006350948.1| - 0.003 18.2 0.0 0.0058 17.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N_2 PF13602.6 gi|389848711|ref|YP_006350948.1| - 0.16 13.0 0.0 0.66 11.0 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Abhydrolase_1 PF00561.20 gi|389848712|ref|YP_006350949.1| - 8.9e-24 84.5 0.6 9.4e-23 81.2 0.6 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|389848712|ref|YP_006350949.1| - 1.3e-18 68.5 3.5 1.6e-18 68.1 3.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|389848712|ref|YP_006350949.1| - 2.1e-12 46.8 0.0 3.2e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|389848712|ref|YP_006350949.1| - 0.0091 15.5 0.0 0.16 11.4 0.0 2.5 3 0 0 3 3 3 1 Prolyl oligopeptidase family Esterase PF00756.20 gi|389848712|ref|YP_006350949.1| - 0.044 13.4 0.1 0.098 12.3 0.0 1.5 1 1 0 1 1 1 0 Putative esterase Thioesterase PF00975.20 gi|389848712|ref|YP_006350949.1| - 0.082 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain AMP-binding PF00501.28 gi|389848713|ref|YP_006350950.1| - 8.5e-89 298.1 0.1 1e-88 297.8 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389848713|ref|YP_006350950.1| - 7.2e-19 68.5 0.5 1.7e-18 67.4 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|389848713|ref|YP_006350950.1| - 7.3e-11 41.8 1.7 1.6e-10 40.7 1.7 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DMRL_synthase PF00885.19 gi|389848713|ref|YP_006350950.1| - 0.0013 18.5 1.4 1.1 9.1 0.4 2.2 2 0 0 2 2 2 2 6,7-dimethyl-8-ribityllumazine synthase BAT PF15915.5 gi|389848714|ref|YP_006350951.1| - 3.8e-41 140.6 11.8 3.8e-41 140.6 11.8 2.4 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|389848714|ref|YP_006350951.1| - 1.4e-20 72.8 0.0 3.5e-20 71.5 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|389848714|ref|YP_006350951.1| - 7.3e-07 29.6 0.4 1.8e-06 28.3 0.4 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|389848714|ref|YP_006350951.1| - 2.1e-06 28.1 0.2 5.9e-06 26.6 0.2 1.8 1 0 0 1 1 1 1 GAF domain Phage_integrase PF00589.22 gi|389848714|ref|YP_006350951.1| - 1.6e-05 24.8 0.1 0.00013 21.8 0.0 2.4 2 1 0 2 2 2 1 Phage integrase family Sigma70_r4 PF04545.16 gi|389848714|ref|YP_006350951.1| - 0.018 14.5 0.0 0.064 12.8 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 GAF PF01590.26 gi|389848714|ref|YP_006350951.1| - 0.021 15.5 0.1 0.044 14.4 0.1 1.7 1 0 0 1 1 1 0 GAF domain GerE PF00196.19 gi|389848714|ref|YP_006350951.1| - 0.096 12.3 0.0 0.33 10.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family AMP-binding PF00501.28 gi|389848715|ref|YP_006350952.1| - 8.4e-92 307.9 0.0 1e-91 307.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|389848715|ref|YP_006350952.1| - 1.2e-23 83.9 0.4 2.3e-23 83.0 0.4 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|389848715|ref|YP_006350952.1| - 5.1e-14 51.9 1.8 5.1e-14 51.9 1.8 2.2 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus DUF4212 PF13937.6 gi|389848716|ref|YP_006350953.1| - 2.1e-19 69.7 0.1 2.6e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF485 PF04341.12 gi|389848716|ref|YP_006350953.1| - 0.046 13.7 0.6 0.064 13.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 SSF PF00474.17 gi|389848717|ref|YP_006350954.1| - 1.6e-54 185.3 33.8 2.4e-54 184.7 33.8 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Ycf9 PF01737.17 gi|389848717|ref|YP_006350954.1| - 0.038 13.9 4.4 2.6 8.0 0.1 3.4 2 0 0 2 2 2 0 YCF9 UFC1 PF08694.11 gi|389848717|ref|YP_006350954.1| - 0.21 11.2 0.2 0.37 10.4 0.2 1.3 1 0 0 1 1 1 0 Ubiquitin-fold modifier-conjugating enzyme 1 Usp PF00582.26 gi|389848718|ref|YP_006350955.1| - 6.7e-39 133.6 1.7 8.2e-39 133.3 1.7 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|389848718|ref|YP_006350955.1| - 0.038 13.9 0.0 3.2 7.6 0.0 2.2 1 1 0 2 2 2 0 Electron transfer flavoprotein domain MGS PF02142.22 gi|389848718|ref|YP_006350955.1| - 0.058 13.6 0.0 0.3 11.3 0.0 2.1 1 1 0 2 2 2 0 MGS-like domain YrzK PF17449.2 gi|389848718|ref|YP_006350955.1| - 0.078 13.3 0.1 0.18 12.1 0.1 1.7 1 0 0 1 1 1 0 Uncharacterized YrzK-like TMEM208_SND2 PF05620.11 gi|389848719|ref|YP_006350956.1| - 0.048 13.4 0.1 0.055 13.2 0.1 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 SBP56 PF05694.11 gi|389848720|ref|YP_006350957.1| - 3.7e-191 635.9 0.8 4.3e-191 635.6 0.8 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|389848720|ref|YP_006350957.1| - 0.0011 18.3 0.0 0.036 13.3 0.0 2.3 2 0 0 2 2 2 1 Lactonase, 7-bladed beta-propeller Beta_propel PF09826.9 gi|389848720|ref|YP_006350957.1| - 0.015 14.1 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 Beta propeller domain Fer2 PF00111.27 gi|389848721|ref|YP_006350958.1| - 4.4e-17 61.8 0.4 7.3e-17 61.1 0.4 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_S8 PF00082.22 gi|389848722|ref|YP_006350959.1| - 1.9e-46 158.7 12.3 1.9e-46 158.7 12.3 2.2 2 0 0 2 2 2 1 Subtilase family DUF4625 PF15418.6 gi|389848722|ref|YP_006350959.1| - 0.026 14.7 11.7 0.058 13.6 2.4 4.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4625) DUF5011 PF16403.5 gi|389848722|ref|YP_006350959.1| - 8.4 6.6 9.5 4.7 7.4 0.2 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF5011) Rieske PF00355.26 gi|389848723|ref|YP_006350960.1| - 4.1e-20 71.5 0.0 8.1e-20 70.6 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.19 gi|389848723|ref|YP_006350960.1| - 1.2e-17 64.6 0.1 4e-17 62.9 0.1 1.9 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Ring_hydroxyl_B PF00866.18 gi|389848724|ref|YP_006350961.1| - 1e-41 142.3 3.9 1.2e-41 142.2 3.9 1.0 1 0 0 1 1 1 1 Ring hydroxylating beta subunit SnoaL_4 PF13577.6 gi|389848724|ref|YP_006350961.1| - 3.7e-05 23.8 1.2 8.6e-05 22.7 1.2 1.6 1 1 0 1 1 1 1 SnoaL-like domain Lyase_aromatic PF00221.19 gi|389848726|ref|YP_006350963.1| - 1.9e-173 577.4 1.6 3e-173 576.8 1.6 1.2 1 0 0 1 1 1 1 Aromatic amino acid lyase Cupin_2 PF07883.11 gi|389848727|ref|YP_006350964.1| - 2.5e-07 30.3 0.0 4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|389848727|ref|YP_006350964.1| - 0.0011 18.9 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|389848727|ref|YP_006350964.1| - 0.007 16.0 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|389848727|ref|YP_006350964.1| - 0.032 13.9 0.1 0.06 13.1 0.1 1.4 1 1 1 2 2 2 0 Cupin Hemerythrin PF01814.23 gi|389848728|ref|YP_006350965.1| - 5.2e-19 69.2 14.5 5.2e-19 69.2 14.5 1.6 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.14 gi|389848728|ref|YP_006350965.1| - 6.8e-17 60.9 0.2 1.4e-16 59.9 0.2 1.6 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) DUF773 PF05600.12 gi|389848728|ref|YP_006350965.1| - 0.035 12.8 0.1 0.044 12.5 0.1 1.2 1 0 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 TetR_C_24 PF17932.1 gi|389848728|ref|YP_006350965.1| - 0.093 13.0 0.6 0.093 13.0 0.6 2.5 2 1 1 3 3 3 0 Tetracyclin repressor-like, C-terminal domain HMMR_N PF15905.5 gi|389848728|ref|YP_006350965.1| - 0.14 11.6 1.0 0.19 11.2 1.0 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal CorA PF01544.18 gi|389848728|ref|YP_006350965.1| - 0.2 10.9 5.0 0.49 9.7 4.2 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4618 PF15397.6 gi|389848728|ref|YP_006350965.1| - 0.24 10.8 2.7 0.28 10.6 0.8 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) SOAR PF16533.5 gi|389848728|ref|YP_006350965.1| - 0.27 11.2 2.1 2.5 8.1 0.2 2.3 2 0 0 2 2 2 0 STIM1 Orai1-activating region ABC_tran_CTD PF16326.5 gi|389848728|ref|YP_006350965.1| - 0.28 11.4 8.6 2.3 8.5 1.0 3.1 3 1 0 3 3 3 0 ABC transporter C-terminal domain MutS_III PF05192.18 gi|389848728|ref|YP_006350965.1| - 0.83 9.8 3.1 1.3 9.2 3.2 1.3 1 1 0 1 1 1 0 MutS domain III DUF615 PF04751.14 gi|389848728|ref|YP_006350965.1| - 1.1 9.2 3.8 4.7 7.2 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF615) APG6_N PF17675.1 gi|389848728|ref|YP_006350965.1| - 1.9 9.0 8.9 2 8.9 2.0 2.7 1 1 0 2 2 2 0 Apg6 coiled-coil region NAPRTase_N PF17767.1 gi|389848729|ref|YP_006350966.1| - 5.4e-35 120.5 0.1 1.7e-34 118.9 0.0 1.8 2 0 0 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase PF04095.16 gi|389848729|ref|YP_006350966.1| - 1.2e-10 41.4 0.1 2e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_C PF17956.1 gi|389848729|ref|YP_006350966.1| - 5.9e-08 33.1 0.2 7.1e-07 29.6 0.0 2.3 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain MFS_1 PF07690.16 gi|389848730|ref|YP_006350967.1| - 1.8e-38 132.4 46.8 2e-37 129.0 39.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|389848730|ref|YP_006350967.1| - 0.00094 18.1 23.2 0.0021 17.0 8.1 2.1 1 1 0 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 gi|389848730|ref|YP_006350967.1| - 0.0023 17.3 31.7 0.0072 15.7 29.8 2.1 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB Ost4 PF10215.9 gi|389848730|ref|YP_006350967.1| - 3.4 7.6 5.6 11 5.9 0.0 3.4 3 0 0 3 3 3 0 Oligosaccaryltransferase HTH_10 PF04967.12 gi|389848731|ref|YP_006350968.1| - 2e-14 53.1 0.1 3.5e-14 52.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|389848731|ref|YP_006350968.1| - 0.0023 17.5 0.0 0.0046 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389848731|ref|YP_006350968.1| - 0.003 17.4 0.1 0.0088 15.9 0.0 1.8 1 1 0 1 1 1 1 MarR family HTH_30 PF13556.6 gi|389848731|ref|YP_006350968.1| - 0.014 15.2 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|389848731|ref|YP_006350968.1| - 0.022 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|389848731|ref|YP_006350968.1| - 0.065 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|389848731|ref|YP_006350968.1| - 0.067 13.2 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|389848731|ref|YP_006350968.1| - 0.12 11.9 0.1 0.24 10.9 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HSP20 PF00011.21 gi|389848732|ref|YP_006350969.1| - 1e-24 86.6 0.8 1.2e-24 86.3 0.8 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|389848732|ref|YP_006350969.1| - 6.8e-14 51.2 0.1 1.1e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|389848732|ref|YP_006350969.1| - 0.0021 19.1 0.0 0.0028 18.6 0.0 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|389848732|ref|YP_006350969.1| - 0.0067 16.5 0.1 0.0093 16.0 0.1 1.3 1 0 0 1 1 1 1 GvpH FKBP26_C PF18046.1 gi|389848732|ref|YP_006350969.1| - 0.02 15.0 0.0 8 6.6 0.0 2.3 2 0 0 2 2 2 0 FKBP26_C-terminal PIH1_CS PF18201.1 gi|389848732|ref|YP_006350969.1| - 0.024 15.1 0.0 0.058 13.8 0.0 1.7 1 1 1 2 2 2 0 PIH1 CS-like domain Rx_N PF18052.1 gi|389848732|ref|YP_006350969.1| - 0.14 12.4 3.0 0.38 11.0 3.0 1.8 1 1 0 1 1 1 0 Rx N-terminal domain ABC_tran PF00005.27 gi|389848733|ref|YP_006350970.1| - 5.9e-30 104.6 0.0 7.8e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848733|ref|YP_006350970.1| - 1.8e-16 60.8 0.3 2.2e-11 44.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|389848733|ref|YP_006350970.1| - 0.01 15.6 0.0 1.2 8.8 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|389848733|ref|YP_006350970.1| - 0.014 15.9 0.9 0.021 15.3 0.4 1.5 1 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|389848733|ref|YP_006350970.1| - 0.016 15.7 0.0 0.074 13.5 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|389848733|ref|YP_006350970.1| - 0.03 14.0 0.1 0.04 13.6 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|389848733|ref|YP_006350970.1| - 0.035 12.8 0.1 0.11 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|389848733|ref|YP_006350970.1| - 0.064 12.9 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|389848733|ref|YP_006350970.1| - 0.21 11.4 1.2 0.43 10.4 0.4 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF3562 PF12085.8 gi|389848733|ref|YP_006350970.1| - 1 9.0 3.1 9.2 6.0 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3562) Tmemb_14 PF03647.13 gi|389848735|ref|YP_006350972.1| - 0.017 15.8 4.9 0.023 15.4 4.9 1.1 1 0 0 1 1 1 0 Transmembrane proteins 14C DUF2101 PF09874.9 gi|389848735|ref|YP_006350972.1| - 0.018 14.8 3.4 0.019 14.7 3.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2101) DoxX_2 PF13564.6 gi|389848735|ref|YP_006350972.1| - 0.02 15.0 3.4 0.02 15.0 3.4 1.6 1 1 0 1 1 1 0 DoxX-like family DUF2157 PF09925.9 gi|389848735|ref|YP_006350972.1| - 0.74 9.6 7.4 0.57 10.0 0.3 2.7 2 1 1 3 3 3 0 Predicted membrane protein (DUF2157) AmiS_UreI PF02293.15 gi|389848735|ref|YP_006350972.1| - 0.76 9.8 8.5 1.9 8.5 8.5 1.9 1 1 0 1 1 1 0 AmiS/UreI family transporter DUF3487 PF11990.8 gi|389848735|ref|YP_006350972.1| - 4.7 7.1 7.3 0.55 10.1 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) DUF4407 PF14362.6 gi|389848736|ref|YP_006350973.1| - 0.2 11.0 0.5 0.26 10.6 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2207 PF09972.9 gi|389848736|ref|YP_006350973.1| - 0.24 10.1 0.1 13 4.4 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) EamA PF00892.20 gi|389848737|ref|YP_006350974.1| - 2.5e-33 115.1 35.2 2.1e-21 76.5 10.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family Nuc_sug_transp PF04142.15 gi|389848737|ref|YP_006350974.1| - 0.011 14.9 3.0 0.053 12.7 0.0 2.5 1 1 1 2 2 2 0 Nucleotide-sugar transporter DUF1724 PF08350.10 gi|389848738|ref|YP_006350975.1| - 2.1e-07 31.0 0.0 4.1e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|389848738|ref|YP_006350975.1| - 1.3e-05 25.0 0.1 0.00027 20.7 0.0 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389848738|ref|YP_006350975.1| - 1.8e-05 24.5 0.2 4.5e-05 23.3 0.2 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|389848738|ref|YP_006350975.1| - 0.00023 21.0 0.0 0.00063 19.6 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389848738|ref|YP_006350975.1| - 0.00056 19.8 0.1 0.0015 18.5 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|389848738|ref|YP_006350975.1| - 0.0043 16.8 0.3 0.017 14.9 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389848738|ref|YP_006350975.1| - 0.019 15.0 0.6 11 6.2 0.1 3.0 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|389848738|ref|YP_006350975.1| - 0.15 12.2 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_25 PF13649.6 gi|389848741|ref|YP_006350978.1| - 9.3e-16 58.3 0.0 1.5e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|389848741|ref|YP_006350978.1| - 5e-15 55.9 0.0 7.8e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|389848741|ref|YP_006350978.1| - 4.5e-11 42.9 0.0 6.9e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|389848741|ref|YP_006350978.1| - 4.5e-10 39.5 0.0 5.3e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|389848741|ref|YP_006350978.1| - 7.4e-08 32.2 0.0 1e-07 31.7 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|389848741|ref|YP_006350978.1| - 3.9e-07 30.7 0.0 5.9e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|389848741|ref|YP_006350978.1| - 0.0037 16.2 0.0 0.0046 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.14 gi|389848741|ref|YP_006350978.1| - 0.01 15.2 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_24 PF13578.6 gi|389848741|ref|YP_006350978.1| - 0.029 15.4 0.0 0.054 14.5 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain HTH_IclR PF09339.10 gi|389848743|ref|YP_006350980.1| - 5.2e-07 29.4 0.0 1.4e-06 28.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|389848743|ref|YP_006350980.1| - 0.00011 22.0 0.0 0.00034 20.5 0.0 1.9 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|389848743|ref|YP_006350980.1| - 0.00045 20.1 0.2 0.0014 18.4 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|389848743|ref|YP_006350980.1| - 0.0031 17.0 0.0 0.0059 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Binary_toxB PF03495.14 gi|389848743|ref|YP_006350980.1| - 0.0042 17.2 1.7 0.0042 17.2 1.7 4.2 2 1 2 5 5 5 2 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain HTH_5 PF01022.20 gi|389848743|ref|YP_006350980.1| - 0.01 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_31 PF13560.6 gi|389848743|ref|YP_006350980.1| - 0.066 13.6 0.1 0.22 11.9 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848743|ref|YP_006350980.1| - 0.09 12.8 0.1 0.24 11.4 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Orthoreo_P10 PF07204.11 gi|389848743|ref|YP_006350980.1| - 0.22 11.5 0.1 5.6 7.0 0.0 2.3 2 0 0 2 2 2 0 Orthoreovirus membrane fusion protein p10 DUF11 PF01345.18 gi|389848744|ref|YP_006350981.1| - 3.1e-05 24.2 9.5 3.6e-05 24.0 1.4 3.9 2 2 0 2 2 2 1 Domain of unknown function DUF11 ASH PF15780.5 gi|389848744|ref|YP_006350981.1| - 7.9e-05 22.8 1.5 0.0047 17.1 0.3 2.6 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin CARDB PF07705.11 gi|389848744|ref|YP_006350981.1| - 0.00027 21.1 8.9 0.0054 17.0 0.2 3.6 3 1 1 4 4 4 2 CARDB NPCBM_assoc PF10633.9 gi|389848744|ref|YP_006350981.1| - 0.099 12.9 8.7 0.9 9.8 0.2 4.3 3 2 0 3 3 3 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF916 PF06030.12 gi|389848744|ref|YP_006350981.1| - 0.17 12.0 0.6 3.7 7.6 0.0 2.6 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF916) ABC_tran PF00005.27 gi|389848745|ref|YP_006350982.1| - 5.5e-33 114.4 0.0 8.4e-33 113.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|389848745|ref|YP_006350982.1| - 3.4e-06 26.7 0.2 0.00021 20.8 0.2 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|389848745|ref|YP_006350982.1| - 1.1e-05 25.4 0.0 0.0011 18.9 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389848745|ref|YP_006350982.1| - 7.9e-05 22.3 0.1 0.00014 21.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|389848745|ref|YP_006350982.1| - 0.0003 21.0 0.0 0.0011 19.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|389848745|ref|YP_006350982.1| - 0.00048 20.1 0.0 0.00076 19.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|389848745|ref|YP_006350982.1| - 0.0005 20.6 0.1 0.00097 19.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389848745|ref|YP_006350982.1| - 0.0011 19.2 0.6 0.0068 16.7 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|389848745|ref|YP_006350982.1| - 0.005 16.4 0.1 0.61 9.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|389848745|ref|YP_006350982.1| - 0.0078 16.3 1.5 0.02 15.0 0.4 2.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|389848745|ref|YP_006350982.1| - 0.0091 15.7 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|389848745|ref|YP_006350982.1| - 0.011 16.1 0.3 0.017 15.5 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|389848745|ref|YP_006350982.1| - 0.027 14.2 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|389848745|ref|YP_006350982.1| - 0.047 14.2 0.1 0.19 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|389848745|ref|YP_006350982.1| - 0.049 13.4 0.2 0.45 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|389848745|ref|YP_006350982.1| - 0.073 13.3 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|389848745|ref|YP_006350982.1| - 0.17 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|389848745|ref|YP_006350982.1| - 0.19 11.3 1.3 0.57 9.8 0.0 2.3 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain MacB_PCD PF12704.7 gi|389848746|ref|YP_006350983.1| - 3.1e-15 57.0 4.8 3.1e-15 57.0 4.8 2.3 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|389848746|ref|YP_006350983.1| - 2e-12 47.4 4.9 7.2e-12 45.6 1.5 2.7 3 0 0 3 3 3 1 FtsX-like permease family DUF2190 PF09956.9 gi|389848746|ref|YP_006350983.1| - 0.13 12.7 0.1 0.13 12.7 0.1 2.3 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2190) MacB_PCD PF12704.7 gi|389848747|ref|YP_006350984.1| - 5.1e-15 56.4 1.5 5.1e-15 56.4 1.5 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|389848747|ref|YP_006350984.1| - 2.9e-12 46.9 2.6 2.9e-12 46.9 2.6 2.5 3 0 0 3 3 3 1 FtsX-like permease family GrpE PF01025.19 gi|389848747|ref|YP_006350984.1| - 0.096 12.3 0.0 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 GrpE PQQ_2 PF13360.6 gi|389848748|ref|YP_006350985.1| - 9.6e-27 94.1 6.7 4.8e-18 65.6 2.6 2.1 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|389848748|ref|YP_006350985.1| - 3.3e-17 61.5 3.9 0.015 15.2 0.1 6.0 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|389848748|ref|YP_006350985.1| - 1.6e-16 60.2 14.4 0.00025 21.4 0.1 6.3 6 0 0 6 6 6 6 PQQ-like domain DUF4364 PF14277.6 gi|389848749|ref|YP_006350986.1| - 0.0077 16.0 0.1 0.016 15.0 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF1887 PF09002.11 gi|389848749|ref|YP_006350986.1| - 0.025 13.3 0.0 0.029 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.10 gi|389848749|ref|YP_006350986.1| - 0.12 11.1 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) AcylCoA_DH_N PF12418.8 gi|389848749|ref|YP_006350986.1| - 0.31 11.1 1.2 4.8 7.3 0.0 2.9 3 0 0 3 3 3 0 Acyl-CoA dehydrogenase N terminal tRNA-synt_2b PF00587.25 gi|389848750|ref|YP_006350987.1| - 3e-39 134.8 0.0 5.4e-39 134.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|389848750|ref|YP_006350987.1| - 1.6e-17 63.4 0.5 4.4e-17 62.0 0.5 1.8 1 0 0 1 1 1 1 Anticodon binding domain TGS PF02824.21 gi|389848750|ref|YP_006350987.1| - 3.4e-14 52.6 0.3 7.1e-14 51.6 0.3 1.5 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.14 gi|389848750|ref|YP_006350987.1| - 6.4e-13 48.6 0.0 1.2e-12 47.7 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DUF4270 PF14092.6 gi|389848750|ref|YP_006350987.1| - 0.24 10.5 0.0 0.36 9.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4270) ComA PF02679.15 gi|389848751|ref|YP_006350988.1| - 3.7e-85 285.3 0.1 4.2e-85 285.1 0.1 1.0 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) Hydantoinase_A PF01968.18 gi|389848751|ref|YP_006350988.1| - 0.033 13.4 0.0 0.049 12.9 0.0 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase Vinculin PF01044.19 gi|389848751|ref|YP_006350988.1| - 0.046 12.0 0.1 0.057 11.6 0.1 1.0 1 0 0 1 1 1 0 Vinculin family MmgE_PrpD PF03972.14 gi|389848752|ref|YP_006350989.1| - 9.9e-122 406.6 5.9 1.1e-121 406.5 5.9 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Thiamine_BP PF01910.17 gi|389848753|ref|YP_006350990.1| - 1.7e-16 59.9 1.8 1.9e-16 59.7 1.8 1.0 1 0 0 1 1 1 1 Thiamine-binding protein PALP PF00291.25 gi|389848754|ref|YP_006350991.1| - 2.2e-62 211.1 0.5 2.5e-62 211.0 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|389848754|ref|YP_006350991.1| - 0.055 13.4 0.2 2.4 8.1 0.1 2.6 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Mrr_cat PF04471.12 gi|389848755|ref|YP_006350992.1| - 2.4e-26 92.0 0.0 4.7e-26 91.1 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease zinc_ribbon_2 PF13240.6 gi|389848755|ref|YP_006350992.1| - 0.0012 18.5 4.1 0.0032 17.1 4.1 1.7 1 0 0 1 1 1 1 zinc-ribbon domain TackOD1 PF18551.1 gi|389848755|ref|YP_006350992.1| - 0.0086 15.8 2.6 0.013 15.2 2.6 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DZR PF12773.7 gi|389848755|ref|YP_006350992.1| - 0.058 13.4 3.9 0.13 12.3 3.9 1.6 1 0 0 1 1 1 0 Double zinc ribbon zf-UDP PF14569.6 gi|389848755|ref|YP_006350992.1| - 0.15 12.2 3.8 0.49 10.5 3.9 1.8 1 1 0 1 1 1 0 Zinc-binding RING-finger HTH_10 PF04967.12 gi|389848759|ref|YP_006350996.1| - 1.9e-11 43.6 0.0 3e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|389848759|ref|YP_006350996.1| - 0.0014 18.3 0.0 0.0095 15.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|389848759|ref|YP_006350996.1| - 0.024 14.2 0.1 0.16 11.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|389848759|ref|YP_006350996.1| - 0.075 12.9 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_30 PF13556.6 gi|389848759|ref|YP_006350996.1| - 0.17 11.7 0.0 0.47 10.3 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain FMN_dh PF01070.18 gi|389848760|ref|YP_006350997.1| - 1.5e-27 96.6 8.5 9.5e-25 87.3 8.5 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|389848760|ref|YP_006350997.1| - 3.5e-06 26.3 9.3 0.0023 17.0 0.3 4.1 4 1 1 5 5 4 3 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|389848760|ref|YP_006350997.1| - 8.3e-06 25.2 2.7 8.3e-06 25.2 2.7 1.6 2 0 0 2 2 2 1 Conserved region in glutamate synthase DUF5132 PF17195.4 gi|389848760|ref|YP_006350997.1| - 0.054 13.6 0.3 2.9 8.1 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF5132) GP67 PF17634.2 gi|389848760|ref|YP_006350997.1| - 0.28 11.6 2.1 0.29 11.6 0.1 2.0 2 0 0 2 2 2 0 Gene product 67 TFIIB PF00382.19 gi|389848761|ref|YP_006350998.1| - 1.9e-36 123.9 0.0 1.6e-18 66.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Cyclin_C PF02984.19 gi|389848761|ref|YP_006350998.1| - 0.00026 21.1 0.0 0.2 11.8 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|389848761|ref|YP_006350998.1| - 0.0011 18.5 2.6 0.0059 16.1 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 TF_Zn_Ribbon PF08271.12 gi|389848761|ref|YP_006350998.1| - 0.0041 16.6 0.1 0.0092 15.5 0.1 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.6 gi|389848761|ref|YP_006350998.1| - 0.0073 16.1 0.1 0.069 13.0 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389848761|ref|YP_006350998.1| - 0.011 15.3 0.0 0.07 12.7 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|389848761|ref|YP_006350998.1| - 0.013 15.2 0.5 0.045 13.4 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4648 PF15505.6 gi|389848761|ref|YP_006350998.1| - 0.033 15.0 0.4 0.38 11.7 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4648) HTH_Mga PF08280.11 gi|389848761|ref|YP_006350998.1| - 0.18 11.9 0.1 0.31 11.1 0.1 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain BAT PF15915.5 gi|389848763|ref|YP_006351000.1| - 6.9e-42 143.0 1.7 6.9e-42 143.0 1.7 3.4 3 1 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|389848763|ref|YP_006351000.1| - 1.2e-30 106.7 0.2 2.4e-11 44.1 0.0 3.4 3 0 0 3 3 3 3 GAF domain HTH_10 PF04967.12 gi|389848763|ref|YP_006351000.1| - 7.2e-21 73.7 0.0 2.1e-20 72.3 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|389848763|ref|YP_006351000.1| - 2.3e-14 53.5 0.2 8.9e-14 51.6 0.2 2.1 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|389848763|ref|YP_006351000.1| - 5.2e-10 39.8 0.6 0.00022 21.6 0.0 3.7 4 0 0 4 4 4 2 GAF domain GAF PF01590.26 gi|389848763|ref|YP_006351000.1| - 3.3e-08 34.2 0.6 0.065 13.9 0.0 3.9 4 0 0 4 4 4 3 GAF domain Sigma70_r4 PF04545.16 gi|389848763|ref|YP_006351000.1| - 0.025 14.1 0.1 0.063 12.8 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 FleQ PF06490.11 gi|389848763|ref|YP_006351000.1| - 0.036 14.4 0.3 0.29 11.5 0.0 2.7 3 0 0 3 3 3 0 Flagellar regulatory protein FleQ SatD PF16264.5 gi|389848763|ref|YP_006351000.1| - 0.042 13.5 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 SatD family (SatD) Phasin PF05597.11 gi|389848763|ref|YP_006351000.1| - 0.069 13.1 0.7 1.3 9.0 0.0 3.0 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) HTH_24 PF13412.6 gi|389848763|ref|YP_006351000.1| - 0.073 12.6 0.0 0.22 11.1 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF2116 PF09889.9 gi|389848764|ref|YP_006351001.1| - 0.0028 17.6 0.9 0.15 12.1 0.4 2.1 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FLZ PF04570.14 gi|389848764|ref|YP_006351001.1| - 0.0048 16.3 0.8 0.021 14.3 0.2 1.9 2 0 0 2 2 2 1 zinc-finger of the FCS-type, C2-C2 YHS PF04945.13 gi|389848764|ref|YP_006351001.1| - 0.025 14.7 3.9 0.025 14.7 3.9 1.7 1 1 0 1 1 1 0 YHS domain zf-FCS PF06467.14 gi|389848764|ref|YP_006351001.1| - 0.033 14.1 5.1 0.25 11.3 5.1 2.0 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif YacG PF03884.14 gi|389848764|ref|YP_006351001.1| - 2.2 8.1 6.1 1.5 8.6 1.1 2.1 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG Peptidase_S8 PF00082.22 gi|389848765|ref|YP_006351002.1| - 3.1e-51 174.4 9.4 6.4e-51 173.4 9.4 1.5 1 0 0 1 1 1 1 Subtilase family fn3 PF00041.21 gi|389848765|ref|YP_006351002.1| - 0.0011 19.3 0.0 0.074 13.4 0.0 2.8 2 0 0 2 2 2 1 Fibronectin type III domain Pur_ac_phosph_N PF16656.5 gi|389848765|ref|YP_006351002.1| - 0.0049 17.4 3.5 0.059 13.9 1.5 2.7 1 1 1 2 2 2 1 Purple acid Phosphatase, N-terminal domain CBM_4_9 PF02018.17 gi|389848765|ref|YP_006351002.1| - 0.0094 16.2 0.4 0.21 11.8 0.2 2.8 3 0 0 3 3 3 1 Carbohydrate binding domain DUF4225 PF13988.6 gi|389848765|ref|YP_006351002.1| - 0.015 14.9 0.2 0.034 13.7 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) TRAM PF01938.20 gi|389848766|ref|YP_006351003.1| - 6.6e-16 58.1 1.0 1.1e-15 57.4 1.0 1.4 1 0 0 1 1 1 1 TRAM domain Nramp PF01566.18 gi|389848767|ref|YP_006351004.1| - 4.7e-66 223.2 34.2 7.8e-66 222.5 34.2 1.3 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein SH3_2 PF07653.17 gi|389848768|ref|YP_006351005.1| - 1.3e-16 60.0 0.9 4.4e-10 39.1 0.2 2.2 2 0 0 2 2 2 2 Variant SH3 domain SH3_9 PF14604.6 gi|389848768|ref|YP_006351005.1| - 1.6e-09 37.5 6.1 1.7e-06 27.8 0.7 2.4 2 1 0 2 2 2 2 Variant SH3 domain SH3_1 PF00018.28 gi|389848768|ref|YP_006351005.1| - 9.4e-09 34.8 2.8 0.00062 19.3 0.7 2.2 2 0 0 2 2 2 2 SH3 domain SH3_3 PF08239.11 gi|389848768|ref|YP_006351005.1| - 2.1e-05 24.7 5.9 0.0072 16.6 0.8 2.3 2 0 0 2 2 2 2 Bacterial SH3 domain SH3_16 PF18348.1 gi|389848768|ref|YP_006351005.1| - 0.08 12.8 6.6 1.7 8.5 1.8 2.9 3 1 0 3 3 3 0 Bacterial dipeptidyl-peptidase Sh3 domain SH3_4 PF06347.13 gi|389848768|ref|YP_006351005.1| - 0.16 11.8 11.2 0.6 10.0 0.3 2.7 1 1 2 3 3 3 0 Bacterial SH3 domain DUF1604 PF07713.13 gi|389848768|ref|YP_006351005.1| - 0.19 11.6 0.2 0.7 9.7 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1604) DDE_Tnp_IS240 PF13610.6 gi|389848769|ref|YP_006351006.1| - 1.7e-28 99.6 0.0 2.3e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 DDE domain CoA_trans PF01144.23 gi|389848774|ref|YP_006351011.1| - 8.4e-35 120.1 4.2 7e-32 110.6 0.2 2.8 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|389848774|ref|YP_006351011.1| - 5.9e-05 21.6 0.1 9.3e-05 20.9 0.1 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter Hydantoinase_B PF02538.14 gi|389848775|ref|YP_006351012.1| - 3.6e-156 520.6 0.1 4.2e-156 520.4 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Sigma70_ner PF04546.13 gi|389848775|ref|YP_006351012.1| - 0.27 11.1 1.0 2.2 8.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, non-essential region Hydantoinase_A PF01968.18 gi|389848776|ref|YP_006351013.1| - 2.6e-94 315.7 3.4 2.9e-93 312.3 0.1 2.7 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|389848776|ref|YP_006351013.1| - 1.9e-47 161.3 0.8 5.7e-45 153.2 0.4 2.7 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase N-terminal region FtsA PF14450.6 gi|389848776|ref|YP_006351013.1| - 0.0044 17.4 0.5 2.4 8.6 0.2 3.0 3 1 0 3 3 3 2 Cell division protein FtsA ROK PF00480.20 gi|389848776|ref|YP_006351013.1| - 0.0079 15.7 0.1 0.093 12.2 0.1 2.2 2 0 0 2 2 2 1 ROK family MutL PF13941.6 gi|389848776|ref|YP_006351013.1| - 0.18 10.3 2.0 0.69 8.4 0.2 2.1 2 0 0 2 2 2 0 MutL protein SBP_bac_5 PF00496.22 gi|389848777|ref|YP_006351014.1| - 3.9e-73 246.6 9.1 5e-73 246.2 9.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|389848777|ref|YP_006351014.1| - 0.0018 18.0 0.4 0.0034 17.1 0.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|389848778|ref|YP_006351015.1| - 2.9e-36 124.9 8.6 2.9e-36 124.9 8.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|389848779|ref|YP_006351016.1| - 2.7e-25 89.2 7.4 2.7e-25 89.2 7.4 1.8 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389848779|ref|YP_006351016.1| - 1.2e-10 41.2 0.1 1.2e-10 41.2 0.1 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|389848780|ref|YP_006351017.1| - 8.6e-27 94.3 0.0 1.2e-26 93.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848780|ref|YP_006351017.1| - 1.7e-17 63.7 0.0 2.9e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|389848780|ref|YP_006351017.1| - 0.00023 20.7 0.0 0.00061 19.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|389848780|ref|YP_006351017.1| - 0.00032 20.3 0.0 0.0018 17.9 0.0 1.9 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_21 PF13304.6 gi|389848780|ref|YP_006351017.1| - 0.0012 18.8 0.2 0.0028 17.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system Sigma54_activat PF00158.26 gi|389848780|ref|YP_006351017.1| - 0.012 15.3 0.0 0.031 14.0 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain AIG1 PF04548.16 gi|389848780|ref|YP_006351017.1| - 0.016 14.5 0.1 0.025 13.9 0.1 1.2 1 0 0 1 1 1 0 AIG1 family AAA PF00004.29 gi|389848780|ref|YP_006351017.1| - 0.024 15.1 0.0 0.044 14.2 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|389848780|ref|YP_006351017.1| - 0.04 14.2 0.0 0.11 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|389848780|ref|YP_006351017.1| - 0.052 13.9 0.1 0.1 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|389848780|ref|YP_006351017.1| - 0.074 12.4 0.0 0.23 10.8 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|389848780|ref|YP_006351017.1| - 0.082 12.8 0.1 0.26 11.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain ATP-synt_ab PF00006.25 gi|389848780|ref|YP_006351017.1| - 0.084 12.5 0.2 0.21 11.2 0.2 1.8 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|389848780|ref|YP_006351017.1| - 0.098 12.7 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain RNA_helicase PF00910.22 gi|389848780|ref|YP_006351017.1| - 0.1 13.0 0.0 0.36 11.2 0.0 2.0 2 0 0 2 2 2 0 RNA helicase ABC_tran PF00005.27 gi|389848781|ref|YP_006351018.1| - 1.1e-33 116.6 0.0 1.7e-33 116.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848781|ref|YP_006351018.1| - 3.7e-16 59.4 0.2 6.4e-16 58.6 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389848781|ref|YP_006351018.1| - 6.6e-09 36.0 0.3 1.9e-05 24.6 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848781|ref|YP_006351018.1| - 4.1e-08 32.9 0.1 2e-07 30.7 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|389848781|ref|YP_006351018.1| - 5.1e-05 23.6 0.2 0.00032 21.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848781|ref|YP_006351018.1| - 0.00021 21.7 0.2 0.00045 20.7 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|389848781|ref|YP_006351018.1| - 0.00092 19.6 0.1 0.0099 16.3 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|389848781|ref|YP_006351018.1| - 0.0023 17.5 0.2 1.1 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|389848781|ref|YP_006351018.1| - 0.003 17.3 0.1 0.0053 16.5 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|389848781|ref|YP_006351018.1| - 0.0065 16.5 0.2 0.39 10.7 0.1 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|389848781|ref|YP_006351018.1| - 0.032 13.9 0.0 0.05 13.2 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|389848781|ref|YP_006351018.1| - 0.033 13.6 0.1 4.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_29 PF13555.6 gi|389848781|ref|YP_006351018.1| - 0.034 13.9 0.2 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain tRNA_lig_kinase PF08303.11 gi|389848781|ref|YP_006351018.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA ligase kinase domain SbcCD_C PF13558.6 gi|389848781|ref|YP_006351018.1| - 0.073 13.3 0.1 0.79 10.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|389848781|ref|YP_006351018.1| - 0.073 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|389848781|ref|YP_006351018.1| - 0.078 12.9 0.2 0.14 12.0 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|389848781|ref|YP_006351018.1| - 0.13 12.8 0.0 0.21 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|389848781|ref|YP_006351018.1| - 0.15 12.4 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|389848781|ref|YP_006351018.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ATPase PF06745.13 gi|389848781|ref|YP_006351018.1| - 0.19 11.1 0.3 0.39 10.0 0.1 1.6 2 0 0 2 2 2 0 KaiC AAA_13 PF13166.6 gi|389848781|ref|YP_006351018.1| - 0.55 8.8 1.7 0.9 8.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain Hydantoinase_A PF01968.18 gi|389848782|ref|YP_006351019.1| - 1.4e-102 342.9 1.1 2e-99 332.6 0.0 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|389848782|ref|YP_006351019.1| - 2.5e-49 167.4 0.3 5.9e-49 166.2 0.3 1.7 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|389848782|ref|YP_006351019.1| - 0.014 14.9 0.0 1.4 8.4 0.1 2.8 1 1 1 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Pilus_CpaD PF09476.10 gi|389848782|ref|YP_006351019.1| - 0.03 14.1 0.1 0.08 12.7 0.0 1.8 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) MutL PF13941.6 gi|389848782|ref|YP_006351019.1| - 1.6 7.2 3.9 4 5.9 1.1 2.2 2 0 0 2 2 2 0 MutL protein Hydantoinase_B PF02538.14 gi|389848783|ref|YP_006351020.1| - 3e-158 527.5 0.4 3.5e-158 527.2 0.4 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Cupin_2 PF07883.11 gi|389848784|ref|YP_006351021.1| - 3.5e-13 49.0 0.2 4.7e-13 48.6 0.2 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|389848784|ref|YP_006351021.1| - 4.1e-05 23.5 0.0 5.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|389848784|ref|YP_006351021.1| - 0.00089 18.9 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|389848784|ref|YP_006351021.1| - 0.0014 18.2 0.1 0.0019 17.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HgmA PF04209.13 gi|389848784|ref|YP_006351021.1| - 0.0093 14.7 0.0 0.0094 14.7 0.0 1.0 1 0 0 1 1 1 1 homogentisate 1,2-dioxygenase ARD PF03079.14 gi|389848784|ref|YP_006351021.1| - 0.017 15.3 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family CENP-C_C PF11699.8 gi|389848784|ref|YP_006351021.1| - 0.15 12.3 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like HTH_AsnC-type PF13404.6 gi|389848785|ref|YP_006351022.1| - 1.8e-14 53.2 1.6 3.2e-14 52.5 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|389848785|ref|YP_006351022.1| - 3e-13 49.1 0.4 3e-13 49.1 0.4 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|389848785|ref|YP_006351022.1| - 1.9e-09 37.3 0.1 3.5e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|389848785|ref|YP_006351022.1| - 0.00058 19.8 0.1 0.0011 18.9 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|389848785|ref|YP_006351022.1| - 0.00083 19.4 0.1 0.0015 18.6 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|389848785|ref|YP_006351022.1| - 0.00095 19.1 0.6 0.0022 17.9 0.6 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|389848785|ref|YP_006351022.1| - 0.01 15.7 0.1 0.018 14.9 0.1 1.4 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|389848785|ref|YP_006351022.1| - 0.028 14.3 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|389848785|ref|YP_006351022.1| - 0.045 13.6 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|389848785|ref|YP_006351022.1| - 0.046 13.6 0.4 0.12 12.3 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|389848785|ref|YP_006351022.1| - 0.084 12.7 0.5 0.25 11.2 0.5 1.8 1 1 0 1 1 1 0 Homeodomain-like domain AHSA1 PF08327.11 gi|389848786|ref|YP_006351023.1| - 8.6e-29 100.3 0.0 1e-28 100.0 0.0 1.1 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc2 PF10604.9 gi|389848786|ref|YP_006351023.1| - 2e-12 47.6 0.2 2.6e-12 47.2 0.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|389848786|ref|YP_006351023.1| - 0.0058 16.8 0.0 0.0082 16.3 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.9 gi|389848786|ref|YP_006351023.1| - 0.011 15.9 0.4 0.024 14.8 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2505) HTH_20 PF12840.7 gi|389848787|ref|YP_006351024.1| - 6.7e-18 64.5 0.3 6.7e-18 64.5 0.3 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|389848787|ref|YP_006351024.1| - 2.2e-12 46.6 0.0 3.3e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|389848787|ref|YP_006351024.1| - 5.4e-07 29.4 0.2 1e-06 28.5 0.1 1.5 1 1 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389848787|ref|YP_006351024.1| - 0.00013 21.9 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|389848787|ref|YP_006351024.1| - 0.0005 20.0 0.0 0.0012 18.7 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|389848787|ref|YP_006351024.1| - 0.00056 19.6 0.4 0.0011 18.7 0.0 1.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389848787|ref|YP_006351024.1| - 0.0098 16.1 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|389848787|ref|YP_006351024.1| - 0.013 15.2 0.0 0.016 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|389848787|ref|YP_006351024.1| - 0.014 15.8 0.1 0.023 15.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|389848787|ref|YP_006351024.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|389848787|ref|YP_006351024.1| - 0.021 14.9 4.6 0.17 12.0 1.9 2.8 1 1 1 2 2 2 0 DprA winged helix domain Rrf2 PF02082.20 gi|389848787|ref|YP_006351024.1| - 0.023 15.0 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|389848787|ref|YP_006351024.1| - 0.025 14.1 0.0 0.051 13.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_47 PF16221.5 gi|389848787|ref|YP_006351024.1| - 0.05 13.2 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix ArsR PF09824.9 gi|389848787|ref|YP_006351024.1| - 0.2 11.3 0.0 0.25 10.9 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator Abhydrolase_6 PF12697.7 gi|389848788|ref|YP_006351025.1| - 1.8e-19 71.3 10.6 2e-19 71.1 10.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389848788|ref|YP_006351025.1| - 1.8e-07 31.1 0.0 2.7e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|389848788|ref|YP_006351025.1| - 0.0031 16.8 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|389848788|ref|YP_006351025.1| - 0.018 14.8 0.0 0.033 13.9 0.0 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|389848788|ref|YP_006351025.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein ADH_N PF08240.12 gi|389848789|ref|YP_006351026.1| - 3.6e-22 78.3 0.5 5.6e-22 77.7 0.5 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|389848789|ref|YP_006351026.1| - 5.3e-22 78.2 0.0 1e-21 77.3 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|389848789|ref|YP_006351026.1| - 0.00082 20.4 0.0 0.0021 19.1 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|389848789|ref|YP_006351026.1| - 0.028 13.7 0.3 0.045 13.0 0.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ADH_N_2 PF16884.5 gi|389848789|ref|YP_006351026.1| - 0.19 11.6 0.1 0.44 10.5 0.1 1.6 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase VanZ PF04892.12 gi|389848790|ref|YP_006351027.1| - 0.00077 20.1 0.1 0.00098 19.8 0.1 1.2 1 1 0 1 1 1 1 VanZ like family Transgly_assoc PF04226.13 gi|389848790|ref|YP_006351027.1| - 0.013 15.8 0.5 2.1 8.7 0.0 2.4 2 0 0 2 2 2 0 Transglycosylase associated protein DUF2279 PF10043.9 gi|389848790|ref|YP_006351027.1| - 0.17 12.7 0.0 0.25 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) GvpG PF05120.12 gi|389848791|ref|YP_006351028.1| - 0.085 12.9 0.1 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein G VanZ PF04892.12 gi|389848792|ref|YP_006351029.1| - 7.8e-06 26.6 0.0 9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 VanZ like family DUF1440 PF07274.12 gi|389848792|ref|YP_006351029.1| - 0.028 14.8 0.0 0.034 14.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) ArsP_1 PF03773.13 gi|389848793|ref|YP_006351030.1| - 3.8e-71 239.6 10.1 5e-71 239.2 10.1 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|389848793|ref|YP_006351030.1| - 6.6e-07 29.3 0.1 1.1e-06 28.6 0.1 1.3 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|389848793|ref|YP_006351030.1| - 0.0032 17.4 0.1 0.0053 16.7 0.1 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|389848793|ref|YP_006351030.1| - 0.031 14.3 0.1 0.031 14.3 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) HisKA_4TM PF16926.5 gi|389848794|ref|YP_006351031.1| - 2.2e-15 56.6 1.0 4.9e-15 55.5 1.0 1.6 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|389848794|ref|YP_006351031.1| - 3.5e-13 50.0 0.0 7e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|389848794|ref|YP_006351031.1| - 0.00028 20.8 0.1 0.00056 19.9 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|389848794|ref|YP_006351031.1| - 0.00073 19.4 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|389848794|ref|YP_006351031.1| - 0.00083 19.4 0.6 0.0017 18.4 0.6 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|389848794|ref|YP_006351031.1| - 0.15 11.8 0.8 0.58 9.9 0.1 2.1 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain AA_permease_2 PF13520.6 gi|389848795|ref|YP_006351032.1| - 8.9e-08 31.4 8.8 2.4e-07 30.0 8.8 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|389848795|ref|YP_006351032.1| - 0.0076 14.9 8.6 0.019 13.6 8.6 1.7 1 1 0 1 1 1 1 Amino acid permease SAYSvFN PF10260.9 gi|389848795|ref|YP_006351032.1| - 0.43 10.5 0.0 0.43 10.5 0.0 2.4 3 0 0 3 3 3 0 Uncharacterized conserved domain (SAYSvFN) AA_permease_2 PF13520.6 gi|389848796|ref|YP_006351033.1| - 9.5e-33 113.6 41.9 1.2e-32 113.3 41.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|389848796|ref|YP_006351033.1| - 1.1e-18 67.1 38.6 1.5e-18 66.6 38.6 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_C PF13906.6 gi|389848796|ref|YP_006351033.1| - 0.00048 20.1 4.4 0.0031 17.5 4.4 2.5 1 0 0 1 1 1 1 C-terminus of AA_permease Usp PF00582.26 gi|389848796|ref|YP_006351033.1| - 0.0025 18.3 0.9 0.72 10.3 0.2 2.8 3 0 0 3 3 3 2 Universal stress protein family DUF1286 PF06939.11 gi|389848796|ref|YP_006351033.1| - 0.47 10.8 9.2 0.73 10.1 0.2 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF1286) TrmB PF01978.19 gi|389848797|ref|YP_006351034.1| - 9.2e-07 28.7 0.2 1.2e-06 28.3 0.2 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|389848797|ref|YP_006351034.1| - 0.02 14.5 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sulfolobus_pRN PF05584.11 gi|389848797|ref|YP_006351034.1| - 0.14 12.2 0.3 0.17 11.9 0.3 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein adh_short_C2 PF13561.6 gi|389848798|ref|YP_006351035.1| - 2.2e-63 214.0 0.5 2.5e-63 213.8 0.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|389848798|ref|YP_006351035.1| - 7.2e-59 198.5 0.2 8.5e-59 198.3 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|389848798|ref|YP_006351035.1| - 5.2e-20 72.1 0.1 6.6e-20 71.8 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|389848798|ref|YP_006351035.1| - 0.0047 16.4 0.1 0.0062 16.0 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family PurA PF04845.13 gi|389848798|ref|YP_006351035.1| - 0.088 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 PurA ssDNA and RNA-binding protein Phage_sheath_1C PF17482.2 gi|389848799|ref|YP_006351036.1| - 0.018 15.0 0.0 0.046 13.7 0.0 1.7 2 0 0 2 2 2 0 Phage tail sheath C-terminal domain MaoC_dehydratas PF01575.19 gi|389848800|ref|YP_006351037.1| - 8.2e-24 83.5 0.0 1.3e-23 82.9 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|389848800|ref|YP_006351037.1| - 6.7e-07 29.5 0.0 4.8e-06 26.7 0.0 2.2 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|389848800|ref|YP_006351037.1| - 0.011 16.1 0.1 0.026 14.9 0.1 1.8 1 0 0 1 1 1 0 Thioesterase superfamily 4HBT_3 PF13622.6 gi|389848800|ref|YP_006351037.1| - 0.11 12.8 0.4 0.47 10.7 0.1 2.1 2 0 0 2 2 2 0 Thioesterase-like superfamily Apolipoprotein PF01442.18 gi|389848802|ref|YP_006351039.1| - 0.00012 22.1 0.8 0.00021 21.2 0.5 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Phasin_2 PF09361.10 gi|389848802|ref|YP_006351039.1| - 0.00048 20.4 5.3 0.003 17.8 0.3 2.6 2 1 0 2 2 2 1 Phasin protein Phasin PF05597.11 gi|389848802|ref|YP_006351039.1| - 0.004 17.2 0.8 0.0068 16.4 0.7 1.6 1 1 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Poxvirus_B22R PF04395.12 gi|389848802|ref|YP_006351039.1| - 0.0046 16.5 0.2 0.0071 15.9 0.2 1.2 1 0 0 1 1 1 1 Poxvirus B22R protein YkyA PF10368.9 gi|389848802|ref|YP_006351039.1| - 0.015 15.0 7.4 0.02 14.6 7.4 1.2 1 0 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF3347 PF11827.8 gi|389848802|ref|YP_006351039.1| - 0.016 15.4 2.9 0.021 15.0 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) DKNYY PF13644.6 gi|389848802|ref|YP_006351039.1| - 0.024 15.4 0.2 0.029 15.2 0.2 1.2 1 0 0 1 1 1 0 DKNYY family Carbpep_Y_N PF05388.11 gi|389848802|ref|YP_006351039.1| - 0.048 14.2 2.2 0.11 13.0 2.2 1.7 1 1 0 1 1 1 0 Carboxypeptidase Y pro-peptide STG PF15809.5 gi|389848802|ref|YP_006351039.1| - 0.077 13.1 0.1 0.09 12.8 0.1 1.1 1 0 0 1 1 1 0 Simian taste bud-specific gene product family PhaP_Bmeg PF09602.10 gi|389848802|ref|YP_006351039.1| - 0.12 12.3 8.7 0.04 13.8 2.2 2.3 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) PMC2NT PF08066.12 gi|389848802|ref|YP_006351039.1| - 0.13 13.0 6.8 1.8 9.3 6.8 2.5 1 1 0 1 1 1 0 PMC2NT (NUC016) domain Tweety PF04906.13 gi|389848802|ref|YP_006351039.1| - 0.22 10.1 3.4 1.7 7.2 0.1 2.1 2 0 0 2 2 2 0 Tweety DUF2935 PF11155.8 gi|389848802|ref|YP_006351039.1| - 0.26 11.6 1.9 2.9 8.2 1.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) YtxH PF12732.7 gi|389848802|ref|YP_006351039.1| - 0.76 10.4 2.9 5.4 7.6 0.3 2.5 1 1 1 2 2 2 0 YtxH-like protein CNDH2_C PF16858.5 gi|389848802|ref|YP_006351039.1| - 1.6 8.5 7.6 1.9 8.3 7.6 1.0 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term Cor1 PF04803.12 gi|389848802|ref|YP_006351039.1| - 8.5 6.6 10.9 4.8 7.4 1.8 2.5 1 1 1 2 2 2 0 Cor1/Xlr/Xmr conserved region PHA_synth_III_E PF09712.10 gi|389848803|ref|YP_006351040.1| - 8.6e-07 28.3 6.7 1.3e-05 24.4 0.3 2.4 1 1 2 3 3 3 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.11 gi|389848803|ref|YP_006351040.1| - 0.006 16.6 3.3 0.0084 16.1 1.5 2.2 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF2199 PF09965.9 gi|389848803|ref|YP_006351040.1| - 0.0075 16.3 0.8 0.0097 16.0 0.1 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2199) DUF1874 PF08960.10 gi|389848803|ref|YP_006351040.1| - 0.028 14.6 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1874) FliD_C PF07195.12 gi|389848803|ref|YP_006351040.1| - 0.037 13.4 0.1 0.055 12.9 0.1 1.4 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF812 PF05667.11 gi|389848803|ref|YP_006351040.1| - 0.11 11.4 3.7 0.12 11.2 3.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF812) KCNQ_channel PF03520.14 gi|389848803|ref|YP_006351040.1| - 0.13 12.0 0.2 2.7 7.8 0.1 2.2 2 0 0 2 2 2 0 KCNQ voltage-gated potassium channel Sipho_Gp157 PF05565.11 gi|389848803|ref|YP_006351040.1| - 0.35 10.9 7.1 3.8 7.5 0.7 2.5 1 1 2 3 3 3 0 Siphovirus Gp157 BMFP PF04380.13 gi|389848803|ref|YP_006351040.1| - 1.1 9.8 7.7 0.38 11.3 3.9 2.1 2 0 0 2 2 2 0 Membrane fusogenic activity Abhydrolase_1 PF00561.20 gi|389848804|ref|YP_006351041.1| - 7.6e-26 91.3 0.0 1.2e-25 90.7 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|389848804|ref|YP_006351041.1| - 1.7e-12 47.3 0.0 3e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Hydrolase_4 PF12146.8 gi|389848804|ref|YP_006351041.1| - 1.5e-09 37.5 0.0 5.4e-05 22.6 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DUF3141 PF11339.8 gi|389848804|ref|YP_006351041.1| - 1.1e-08 34.0 0.0 3.6e-08 32.3 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) HHH_5 PF14520.6 gi|389848804|ref|YP_006351041.1| - 6.7e-08 33.0 0.0 1.3e-07 32.2 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain PHB_depo_C PF06850.11 gi|389848804|ref|YP_006351041.1| - 1.6e-06 27.8 0.0 2.6e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DLH PF01738.18 gi|389848804|ref|YP_006351041.1| - 3.2e-05 23.6 0.0 0.0016 18.0 0.0 2.7 2 1 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_6 PF12697.7 gi|389848804|ref|YP_006351041.1| - 0.00014 22.5 0.0 0.00026 21.7 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Cdd1 PF11731.8 gi|389848804|ref|YP_006351041.1| - 0.00037 20.7 0.0 0.00082 19.6 0.0 1.5 1 0 0 1 1 1 1 Pathogenicity locus DUF4332 PF14229.6 gi|389848804|ref|YP_006351041.1| - 0.0045 17.2 0.1 0.046 14.0 0.1 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) LIP PF03583.14 gi|389848804|ref|YP_006351041.1| - 0.0063 15.9 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 Secretory lipase BAAT_C PF08840.11 gi|389848804|ref|YP_006351041.1| - 0.0065 16.4 0.0 0.53 10.2 0.0 2.3 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal FSH1 PF03959.13 gi|389848804|ref|YP_006351041.1| - 0.011 15.4 0.0 0.21 11.2 0.0 2.2 2 0 0 2 2 2 0 Serine hydrolase (FSH1) HHH PF00633.23 gi|389848804|ref|YP_006351041.1| - 0.022 14.6 0.2 0.086 12.8 0.1 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif Abhydrolase_5 PF12695.7 gi|389848804|ref|YP_006351041.1| - 0.051 13.3 0.0 7.2 6.3 0.0 2.4 2 1 0 2 2 2 0 Alpha/beta hydrolase family Gp-FAR-1 PF05823.12 gi|389848804|ref|YP_006351041.1| - 0.059 13.7 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Usp PF00582.26 gi|389848805|ref|YP_006351042.1| - 4.6e-31 108.2 0.0 5.1e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Methyltransf_31 PF13847.6 gi|389848805|ref|YP_006351042.1| - 0.14 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain VAPB_antitox PF02697.14 gi|389848807|ref|YP_006351044.1| - 0.00054 20.7 0.2 0.00061 20.5 0.2 1.1 1 0 0 1 1 1 1 Putative antitoxin BRE PF06113.12 gi|389848807|ref|YP_006351044.1| - 0.16 10.8 0.0 0.17 10.7 0.0 1.0 1 0 0 1 1 1 0 Brain and reproductive organ-expressed protein (BRE) ADH_zinc_N_2 PF13602.6 gi|389848809|ref|YP_006351046.1| - 1.4e-26 94.2 0.0 2.4e-26 93.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|389848809|ref|YP_006351046.1| - 3.5e-16 59.4 0.4 1.3e-15 57.5 0.0 2.1 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|389848809|ref|YP_006351046.1| - 1.1e-08 34.9 0.3 9.2e-08 31.9 0.0 2.3 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|389848809|ref|YP_006351046.1| - 0.00028 20.3 1.0 0.00049 19.5 1.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ADH_N_2 PF16884.5 gi|389848809|ref|YP_006351046.1| - 0.014 15.2 0.1 0.072 13.0 0.1 2.2 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase Eno-Rase_NADH_b PF12242.8 gi|389848809|ref|YP_006351046.1| - 0.11 12.3 0.6 0.26 11.0 0.6 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Pribosyltran PF00156.27 gi|389848810|ref|YP_006351047.1| - 7.7e-27 93.8 0.0 1.1e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|389848810|ref|YP_006351047.1| - 0.0029 17.1 0.1 0.0085 15.5 0.1 1.7 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|389848810|ref|YP_006351047.1| - 0.0086 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase Prok-RING_2 PF14445.6 gi|389848811|ref|YP_006351048.1| - 0.0049 17.0 6.2 0.0057 16.8 6.2 1.0 1 0 0 1 1 1 1 Prokaryotic RING finger family 2 zf-HIT PF04438.16 gi|389848811|ref|YP_006351048.1| - 0.0052 16.6 4.4 0.0074 16.1 1.0 2.1 2 0 0 2 2 2 1 HIT zinc finger zf-B_box PF00643.24 gi|389848811|ref|YP_006351048.1| - 0.093 12.9 8.4 0.18 12.0 5.1 2.2 2 0 0 2 2 2 0 B-box zinc finger DZR PF12773.7 gi|389848811|ref|YP_006351048.1| - 0.65 10.1 11.1 5.2 7.2 11.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon tRNA-synt_1g PF09334.11 gi|389848811|ref|YP_006351048.1| - 1.1 7.9 3.3 1.1 8.0 3.3 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) Usp PF00582.26 gi|389848812|ref|YP_006351049.1| - 2.1e-55 187.1 2.3 1e-26 94.1 0.3 2.0 2 0 0 2 2 2 2 Universal stress protein family CBS PF00571.28 gi|389848813|ref|YP_006351050.1| - 1.1e-21 77.0 3.8 2.4e-12 47.1 0.4 2.2 2 0 0 2 2 2 2 CBS domain DUF2944 PF11161.8 gi|389848813|ref|YP_006351050.1| - 0.056 13.3 0.6 0.093 12.6 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2946) E1-E2_ATPase PF00122.20 gi|389848814|ref|YP_006351051.1| - 7.2e-51 172.3 5.5 7.2e-51 172.3 5.5 3.3 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|389848814|ref|YP_006351051.1| - 4.6e-42 144.7 5.7 8.3e-42 143.8 5.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|389848814|ref|YP_006351051.1| - 2.1e-07 30.9 0.2 0.00097 18.9 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|389848814|ref|YP_006351051.1| - 3.9e-05 24.1 0.1 9.9e-05 22.8 0.1 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|389848814|ref|YP_006351051.1| - 0.00018 21.7 0.1 0.00045 20.4 0.1 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DS PF01916.17 gi|389848815|ref|YP_006351052.1| - 2.5e-100 335.5 0.0 2.9e-100 335.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Cu-oxidase_3 PF07732.15 gi|389848817|ref|YP_006351054.1| - 7.5e-23 80.8 1.1 2.3e-22 79.2 0.1 2.3 3 0 0 3 3 3 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|389848817|ref|YP_006351054.1| - 9.3e-14 51.3 4.1 6.7e-06 25.9 0.4 3.3 3 0 0 3 3 3 3 Multicopper oxidase Zip PF02535.22 gi|389848818|ref|YP_006351055.1| - 3.2e-07 29.9 25.1 1.7e-06 27.5 12.8 2.3 1 1 1 2 2 2 2 ZIP Zinc transporter DUF5493 PF17597.2 gi|389848818|ref|YP_006351055.1| - 0.00046 20.4 2.0 0.00046 20.4 2.0 3.0 2 1 1 3 3 3 1 Family of unknown function (DUF5493) Borrelia_P13 PF05628.12 gi|389848818|ref|YP_006351055.1| - 0.19 11.7 16.9 0.22 11.5 1.4 3.1 3 1 1 4 4 4 0 Borrelia membrane protein P13 Copper-bind PF00127.20 gi|389848819|ref|YP_006351056.1| - 1.1e-12 48.3 0.0 1.5e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|389848819|ref|YP_006351056.1| - 0.00044 20.3 0.1 0.0074 16.4 0.1 2.0 1 1 0 1 1 1 1 Cupredoxin-like domain N_NLPC_P60 PF12912.7 gi|389848819|ref|YP_006351056.1| - 0.11 12.9 0.1 5.1 7.5 0.0 2.1 1 1 1 2 2 2 0 NLPC_P60 stabilising domain, N term Fe_dep_repr_C PF02742.15 gi|389848820|ref|YP_006351057.1| - 1.1e-28 99.1 0.2 1.9e-28 98.3 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|389848820|ref|YP_006351057.1| - 8.2e-12 45.1 0.0 1.4e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|389848820|ref|YP_006351057.1| - 4.9e-09 36.3 0.1 8.9e-09 35.5 0.1 1.5 1 0 0 1 1 1 1 FeoA domain MarR_2 PF12802.7 gi|389848820|ref|YP_006351057.1| - 7.7e-08 32.1 0.1 1.7e-07 31.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|389848820|ref|YP_006351057.1| - 5.2e-06 26.4 1.0 7.4e-06 25.9 0.0 1.7 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|389848820|ref|YP_006351057.1| - 5.7e-06 26.2 0.0 1.9e-05 24.5 0.0 1.8 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.6 gi|389848820|ref|YP_006351057.1| - 0.00012 21.6 0.0 0.00023 20.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|389848820|ref|YP_006351057.1| - 0.00027 20.7 0.0 0.00073 19.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|389848820|ref|YP_006351057.1| - 0.00039 20.7 0.0 0.0011 19.3 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 gi|389848820|ref|YP_006351057.1| - 0.0011 18.7 1.8 0.0027 17.5 0.0 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|389848820|ref|YP_006351057.1| - 0.0013 18.8 0.1 0.0028 17.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|389848820|ref|YP_006351057.1| - 0.0014 18.3 0.0 0.05 13.4 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain GntR PF00392.21 gi|389848820|ref|YP_006351057.1| - 0.0022 17.6 0.2 0.0079 15.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family LexA_DNA_bind PF01726.16 gi|389848820|ref|YP_006351057.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain AbiEi_4 PF13338.6 gi|389848820|ref|YP_006351057.1| - 0.02 15.1 0.0 0.052 13.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_5 PF01022.20 gi|389848820|ref|YP_006351057.1| - 0.021 14.7 0.0 0.04 13.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|389848820|ref|YP_006351057.1| - 0.034 14.6 0.0 0.062 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_micro PF17007.5 gi|389848820|ref|YP_006351057.1| - 0.33 9.7 0.0 0.47 9.2 0.0 1.1 1 0 0 1 1 1 0 HTH-like XhlA PF10779.9 gi|389848822|ref|YP_006351059.1| - 0.022 15.0 1.2 0.45 10.8 0.1 2.7 2 0 0 2 2 2 0 Haemolysin XhlA DUF4140 PF13600.6 gi|389848822|ref|YP_006351059.1| - 0.64 10.5 11.7 0.13 12.7 4.1 2.5 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Sugarporin_N PF11471.8 gi|389848822|ref|YP_006351059.1| - 3 7.9 9.4 14 5.7 0.5 3.4 2 1 1 3 3 3 0 Maltoporin periplasmic N-terminal extension MarR_2 PF12802.7 gi|389848823|ref|YP_006351060.1| - 0.081 12.8 0.0 0.28 11.1 0.0 1.8 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|389848823|ref|YP_006351060.1| - 0.086 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|389848823|ref|YP_006351060.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CcmD PF04995.14 gi|389848823|ref|YP_006351060.1| - 0.3 11.2 0.0 0.3 11.2 0.0 2.6 3 0 0 3 3 3 0 Heme exporter protein D (CcmD) FliN_N PF16973.5 gi|389848825|ref|YP_006351062.1| - 0.0048 16.7 0.2 0.0048 16.7 0.2 1.5 2 0 0 2 2 2 1 Flagellar motor switch protein FliN N-terminal DUF11 PF01345.18 gi|389848826|ref|YP_006351063.1| - 3.2e-13 49.8 0.0 3.9e-05 23.9 0.0 3.3 3 0 0 3 3 3 2 Domain of unknown function DUF11 HTH_10 PF04967.12 gi|389848828|ref|YP_006351065.1| - 2.5e-19 68.8 0.1 4.5e-19 68.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|389848828|ref|YP_006351065.1| - 1.7e-08 33.8 5.8 1.3e-05 24.6 0.9 3.7 3 0 0 3 3 3 2 Sigma-70, region 4 HTH_5 PF01022.20 gi|389848828|ref|YP_006351065.1| - 3e-05 23.8 0.1 7.6e-05 22.5 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|389848828|ref|YP_006351065.1| - 6.9e-05 22.7 0.1 0.00018 21.4 0.1 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|389848828|ref|YP_006351065.1| - 0.00032 20.4 0.2 0.0011 18.6 0.2 2.0 1 1 0 1 1 1 1 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|389848828|ref|YP_006351065.1| - 0.00081 19.4 0.6 0.026 14.6 0.2 2.8 2 1 1 3 3 3 1 Sigma-70 region 3 GerE PF00196.19 gi|389848828|ref|YP_006351065.1| - 0.00096 18.7 0.8 0.013 15.0 0.8 2.3 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|389848828|ref|YP_006351065.1| - 0.0018 17.8 0.2 0.011 15.2 0.0 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|389848828|ref|YP_006351065.1| - 0.0021 17.7 0.5 0.034 13.8 0.2 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|389848828|ref|YP_006351065.1| - 0.0021 18.1 0.7 0.049 13.7 0.2 2.8 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|389848828|ref|YP_006351065.1| - 0.0025 17.6 0.2 0.0088 15.8 0.2 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|389848828|ref|YP_006351065.1| - 0.0054 16.9 0.0 0.02 15.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix of insertion element transposase MarR_2 PF12802.7 gi|389848828|ref|YP_006351065.1| - 0.0073 16.2 0.1 0.019 14.8 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|389848828|ref|YP_006351065.1| - 0.014 15.4 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 HTH domain TetR_N PF00440.23 gi|389848828|ref|YP_006351065.1| - 0.016 15.0 0.1 0.041 13.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family MarR PF01047.22 gi|389848828|ref|YP_006351065.1| - 0.032 14.2 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.6 gi|389848828|ref|YP_006351065.1| - 0.033 14.6 0.4 0.3 11.6 0.4 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|389848828|ref|YP_006351065.1| - 0.037 14.2 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LacI PF00356.21 gi|389848828|ref|YP_006351065.1| - 0.049 13.4 0.5 0.15 11.9 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_23 PF13384.6 gi|389848828|ref|YP_006351065.1| - 0.067 13.0 0.1 0.16 11.8 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|389848828|ref|YP_006351065.1| - 0.11 12.3 0.3 0.94 9.4 0.1 2.6 3 0 0 3 3 2 0 AsnC-type helix-turn-helix domain PhoD PF09423.10 gi|389848830|ref|YP_006351067.1| - 1e-105 353.7 3.1 1.4e-105 353.2 3.1 1.2 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 gi|389848830|ref|YP_006351067.1| - 8.5e-32 109.6 0.1 1.8e-31 108.5 0.1 1.6 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Pur_ac_phosph_N PF16656.5 gi|389848830|ref|YP_006351067.1| - 2.7e-07 31.1 0.1 8.2e-07 29.5 0.0 1.9 2 0 0 2 2 2 1 Purple acid Phosphatase, N-terminal domain Ntox25 PF15530.6 gi|389848830|ref|YP_006351067.1| - 0.056 13.6 1.0 0.093 12.9 1.0 1.3 1 0 0 1 1 1 0 Bacterial toxin 25 TAT_signal PF10518.9 gi|389848830|ref|YP_006351067.1| - 0.26 11.2 5.2 0.21 11.5 2.6 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Molybdopterin_N PF18364.1 gi|389848832|ref|YP_006351069.1| - 0.11 12.5 0.1 0.47 10.5 0.1 2.1 1 0 0 1 1 1 0 Molybdopterin oxidoreductase N-terminal domain Baseplate_J PF04865.14 gi|389848834|ref|YP_006351071.1| - 1.4e-13 50.6 9.2 9.8e-13 47.8 7.6 2.7 3 0 0 3 3 3 1 Baseplate J-like protein VCBS PF13517.6 gi|389848834|ref|YP_006351071.1| - 0.021 15.4 7.9 1.4 9.6 0.1 5.0 5 0 0 5 5 5 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AAA_3 PF07726.11 gi|389848836|ref|YP_006351073.1| - 1.2e-64 216.1 0.0 1.9e-64 215.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|389848836|ref|YP_006351073.1| - 2.2e-20 72.3 0.4 4.3e-20 71.3 0.4 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|389848836|ref|YP_006351073.1| - 1.3e-13 51.1 0.0 2.3e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|389848836|ref|YP_006351073.1| - 2.8e-06 27.8 0.0 6.6e-06 26.6 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|389848836|ref|YP_006351073.1| - 0.0011 18.6 0.0 0.012 15.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|389848836|ref|YP_006351073.1| - 0.076 12.4 0.0 0.94 8.8 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|389848836|ref|YP_006351073.1| - 0.12 12.1 0.0 1 9.1 0.0 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DUF58 PF01882.18 gi|389848838|ref|YP_006351075.1| - 2.4e-18 66.2 0.0 7.3e-18 64.6 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|389848838|ref|YP_006351075.1| - 4.4e-08 33.3 1.2 1.5e-07 31.6 1.2 2.0 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|389848838|ref|YP_006351075.1| - 7.6e-05 22.9 0.2 0.0002 21.6 0.2 1.7 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase MFS_1 PF07690.16 gi|389848838|ref|YP_006351075.1| - 0.0065 15.4 1.2 0.014 14.3 0.0 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF4129 PF13559.6 gi|389848839|ref|YP_006351076.1| - 1.4e-10 41.2 0.1 2.4e-10 40.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF3185 PF11381.8 gi|389848839|ref|YP_006351076.1| - 0.02 14.9 0.0 0.02 14.9 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) ABC_tran PF00005.27 gi|389848841|ref|YP_006351078.1| - 7.6e-30 104.2 0.0 2.4e-29 102.6 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|389848841|ref|YP_006351078.1| - 2.3e-13 50.6 3.2 2.6e-09 37.3 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|389848841|ref|YP_006351078.1| - 5.9e-07 29.1 0.4 3.3e-06 26.7 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|389848841|ref|YP_006351078.1| - 0.00023 21.6 0.1 0.00071 20.0 0.0 1.8 1 1 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.22 gi|389848841|ref|YP_006351078.1| - 0.00066 19.4 0.5 0.0066 16.1 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|389848841|ref|YP_006351078.1| - 0.003 18.1 2.6 0.0094 16.5 2.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|389848841|ref|YP_006351078.1| - 0.0035 17.6 0.4 0.039 14.2 0.3 2.4 1 1 1 2 2 2 1 AAA domain DUF87 PF01935.17 gi|389848841|ref|YP_006351078.1| - 0.004 17.3 0.1 0.011 15.8 0.1 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_15 PF13175.6 gi|389848841|ref|YP_006351078.1| - 0.014 15.1 0.1 5.2 6.7 0.0 2.3 1 1 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.15 gi|389848841|ref|YP_006351078.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|389848841|ref|YP_006351078.1| - 0.016 14.9 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|389848841|ref|YP_006351078.1| - 0.031 14.7 0.3 0.26 11.7 0.3 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|389848841|ref|YP_006351078.1| - 0.037 13.5 0.0 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|389848841|ref|YP_006351078.1| - 0.04 13.6 0.4 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|389848841|ref|YP_006351078.1| - 0.045 13.8 0.0 2.3 8.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|389848841|ref|YP_006351078.1| - 0.064 12.5 0.0 3.6 6.8 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.6 gi|389848841|ref|YP_006351078.1| - 0.075 13.3 1.8 2.3 8.5 0.0 3.1 3 1 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|389848841|ref|YP_006351078.1| - 0.08 12.6 0.4 0.36 10.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|389848841|ref|YP_006351078.1| - 0.087 13.0 0.3 1 9.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|389848841|ref|YP_006351078.1| - 0.11 12.1 1.2 7.8 6.0 0.0 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|389848841|ref|YP_006351078.1| - 0.11 12.4 1.4 0.44 10.4 0.1 2.3 2 1 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|389848841|ref|YP_006351078.1| - 0.27 11.8 1.3 1.2 9.7 0.5 2.5 2 1 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.7 gi|389848842|ref|YP_006351079.1| - 0.0017 17.5 24.3 0.0017 17.5 24.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein LapA_dom PF06305.11 gi|389848842|ref|YP_006351079.1| - 0.29 11.0 0.1 0.29 11.0 0.1 3.9 3 1 1 4 4 4 0 Lipopolysaccharide assembly protein A domain ABC2_membrane_2 PF12679.7 gi|389848842|ref|YP_006351079.1| - 3.3 6.9 25.9 60 2.8 25.4 2.3 1 1 0 1 1 1 0 ABC-2 family transporter protein Lactamase_B_5 PF14597.6 gi|389848843|ref|YP_006351080.1| - 0.036 13.5 0.0 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Inositol_P PF00459.25 gi|389848843|ref|YP_006351080.1| - 0.18 11.2 0.3 0.31 10.5 0.3 1.3 1 0 0 1 1 1 0 Inositol monophosphatase family C2-set_2 PF08205.12 gi|389848847|ref|YP_006351084.1| - 0.032 14.3 0.1 0.053 13.6 0.1 1.3 1 0 0 1 1 1 0 CD80-like C2-set immunoglobulin domain SBP_bac_5 PF00496.22 gi|389848848|ref|YP_006351085.1| - 8.1e-66 222.5 0.3 9.5e-66 222.3 0.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle RNA_capsid PF03035.14 gi|389848848|ref|YP_006351085.1| - 0.099 12.6 0.2 0.17 11.8 0.2 1.3 1 0 0 1 1 1 0 Calicivirus putative RNA polymerase/capsid protein BPD_transp_1 PF00528.22 gi|389848849|ref|YP_006351086.1| - 2.5e-38 131.7 11.1 2.5e-38 131.7 11.1 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.14 gi|389848849|ref|YP_006351086.1| - 0.13 12.9 5.2 0.42 11.2 0.1 3.2 3 2 0 3 3 3 0 Renin receptor-like protein GTP_EFTU_D4 PF14578.6 gi|389848849|ref|YP_006351086.1| - 0.17 11.8 0.6 3.4 7.7 0.1 2.3 2 0 0 2 2 2 0 Elongation factor Tu domain 4 BPD_transp_1 PF00528.22 gi|389848850|ref|YP_006351087.1| - 1.7e-31 109.4 10.3 1.7e-31 109.4 10.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|389848850|ref|YP_006351087.1| - 1.2e-06 28.4 2.5 1e-05 25.4 0.0 2.9 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|389848851|ref|YP_006351088.1| - 9.4e-27 94.2 0.0 1.3e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848851|ref|YP_006351088.1| - 1.5e-17 63.8 0.3 3e-17 62.9 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|389848851|ref|YP_006351088.1| - 6.8e-05 23.2 0.2 0.0044 17.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|389848851|ref|YP_006351088.1| - 9.7e-05 22.3 0.3 0.0025 17.7 0.1 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|389848851|ref|YP_006351088.1| - 0.0022 18.4 0.9 0.005 17.2 0.9 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF87 PF01935.17 gi|389848851|ref|YP_006351088.1| - 0.032 14.3 0.1 0.065 13.3 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|389848851|ref|YP_006351088.1| - 0.033 13.9 0.1 0.067 12.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|389848851|ref|YP_006351088.1| - 0.039 13.4 0.3 1.2 8.6 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AIG1 PF04548.16 gi|389848851|ref|YP_006351088.1| - 0.2 11.0 0.2 0.9 8.8 0.2 1.9 2 0 0 2 2 2 0 AIG1 family AAA_7 PF12775.7 gi|389848851|ref|YP_006351088.1| - 0.2 11.1 0.0 0.35 10.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|389848851|ref|YP_006351088.1| - 0.22 11.2 0.0 0.49 10.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|389848851|ref|YP_006351088.1| - 0.22 10.7 0.0 0.34 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|389848852|ref|YP_006351089.1| - 1.8e-31 109.5 0.0 2.5e-31 109.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|389848852|ref|YP_006351089.1| - 8.2e-20 71.1 1.0 1.7e-19 70.1 1.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|389848852|ref|YP_006351089.1| - 3.2e-08 33.7 0.0 0.00015 21.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|389848852|ref|YP_006351089.1| - 1.2e-06 28.9 0.0 2.4e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|389848852|ref|YP_006351089.1| - 0.0001 22.8 0.1 0.00018 22.0 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|389848852|ref|YP_006351089.1| - 0.001 19.0 0.1 0.0021 18.0 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|389848852|ref|YP_006351089.1| - 0.0017 17.9 0.2 0.0038 16.8 0.2 1.6 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|389848852|ref|YP_006351089.1| - 0.012 15.4 0.1 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA PF00004.29 gi|389848852|ref|YP_006351089.1| - 0.012 16.0 0.1 0.076 13.4 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|389848852|ref|YP_006351089.1| - 0.018 15.1 0.1 0.34 10.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|389848852|ref|YP_006351089.1| - 0.023 14.1 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|389848852|ref|YP_006351089.1| - 0.043 14.0 0.2 0.079 13.1 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|389848852|ref|YP_006351089.1| - 0.043 13.3 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region SbcCD_C PF13558.6 gi|389848852|ref|YP_006351089.1| - 0.046 13.9 0.1 0.16 12.3 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 gi|389848852|ref|YP_006351089.1| - 0.053 12.8 0.2 0.1 11.9 0.2 1.4 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|389848852|ref|YP_006351089.1| - 0.058 13.8 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.25 gi|389848852|ref|YP_006351089.1| - 0.066 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|389848852|ref|YP_006351089.1| - 0.071 13.2 0.1 0.17 11.9 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|389848852|ref|YP_006351089.1| - 0.098 11.8 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|389848852|ref|YP_006351089.1| - 0.11 12.2 0.1 0.22 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|389848852|ref|YP_006351089.1| - 0.12 12.3 0.0 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 NTPase NACHT PF05729.12 gi|389848852|ref|YP_006351089.1| - 0.14 12.1 0.2 0.25 11.2 0.2 1.4 1 0 0 1 1 1 0 NACHT domain Dicistro_VP4 PF11492.8 gi|389848854|ref|YP_006351091.1| - 0.41 10.6 4.4 0.34 10.9 1.5 2.5 2 0 0 2 2 2 0 Cricket paralysis virus, VP4 ABC2_membrane_2 PF12679.7 gi|389848856|ref|YP_006351093.1| - 3.8e-26 92.0 13.1 5.8e-26 91.4 9.2 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|389848856|ref|YP_006351093.1| - 1.1e-08 34.7 11.3 1.5e-08 34.2 11.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|389848856|ref|YP_006351093.1| - 2.2e-05 24.0 10.9 3.6e-05 23.3 10.9 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|389848856|ref|YP_006351093.1| - 0.00015 21.8 6.1 0.00015 21.8 6.1 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|389848856|ref|YP_006351093.1| - 0.0017 17.9 6.7 0.0017 17.9 6.7 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF2705 PF10920.8 gi|389848856|ref|YP_006351093.1| - 0.0034 16.7 1.8 0.0034 16.7 1.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2705) EMC3_TMCO1 PF01956.16 gi|389848856|ref|YP_006351093.1| - 0.31 10.8 1.1 0.6 9.8 1.1 1.4 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like ABC_tran PF00005.27 gi|389848857|ref|YP_006351094.1| - 8.3e-26 91.1 0.0 1.1e-25 90.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|389848857|ref|YP_006351094.1| - 8.8e-11 42.2 0.1 2.6e-06 27.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|389848857|ref|YP_006351094.1| - 0.04 13.7 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|389848857|ref|YP_006351094.1| - 0.057 13.7 0.0 0.14 12.4 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|389848857|ref|YP_006351094.1| - 0.057 13.9 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|389848857|ref|YP_006351094.1| - 0.058 13.1 0.1 0.25 11.0 0.1 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|389848857|ref|YP_006351094.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|389848857|ref|YP_006351094.1| - 0.08 13.3 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|389848857|ref|YP_006351094.1| - 0.092 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|389848857|ref|YP_006351094.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase SMC_N PF02463.19 gi|389848857|ref|YP_006351094.1| - 0.16 11.4 0.0 17 4.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TAT_signal PF10518.9 gi|389848858|ref|YP_006351095.1| - 0.051 13.4 0.5 0.11 12.4 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1573 PF07610.11 gi|389848858|ref|YP_006351095.1| - 0.095 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1573) SNF PF00209.18 gi|389848859|ref|YP_006351096.1| - 4e-58 197.4 32.1 1.5e-29 103.1 15.0 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family P66_CC PF16563.5 gi|389848860|ref|YP_006351097.1| - 0.02 14.5 0.3 0.042 13.5 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil and interaction region of P66A and P66B with MBD2 NDUF_C2 PF06374.11 gi|389848860|ref|YP_006351097.1| - 0.13 12.4 0.1 0.14 12.3 0.1 1.3 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) ATPase_2 PF01637.18 gi|389848862|ref|YP_006351099.1| - 1.2e-24 87.5 0.0 1.3e-23 84.1 0.0 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|389848862|ref|YP_006351099.1| - 1.4e-16 60.7 0.0 2.8e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_16 PF13191.6 gi|389848862|ref|YP_006351099.1| - 5.3e-06 26.9 0.1 1.3e-05 25.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|389848862|ref|YP_006351099.1| - 6.5e-06 26.5 0.0 1.3e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|389848862|ref|YP_006351099.1| - 1.4e-05 25.1 0.0 2.4e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|389848862|ref|YP_006351099.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.6 1 1 0 1 1 1 0 Bacterial TniB protein HTH_10 PF04967.12 gi|389848863|ref|YP_006351100.1| - 4.7e-20 71.1 0.0 7.1e-20 70.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|389848863|ref|YP_006351100.1| - 0.0013 18.7 0.2 0.0023 17.8 0.2 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|389848863|ref|YP_006351100.1| - 0.019 14.5 0.0 0.046 13.2 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_8 PF02954.19 gi|389848863|ref|YP_006351100.1| - 0.087 12.6 0.1 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 gi|389848863|ref|YP_006351100.1| - 0.13 11.9 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|389848863|ref|YP_006351100.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-70 region 3 MarR_2 PF12802.7 gi|389848863|ref|YP_006351100.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HD_3 PF13023.6 gi|389848865|ref|YP_006351102.1| - 2.1e-31 109.1 0.6 2.5e-31 108.8 0.6 1.1 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|389848865|ref|YP_006351102.1| - 9.7e-13 48.3 0.2 1.3e-12 47.8 0.2 1.2 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|389848865|ref|YP_006351102.1| - 1.2e-09 38.4 0.1 1.8e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|389848865|ref|YP_006351102.1| - 0.0036 16.8 0.1 0.005 16.3 0.1 1.2 1 0 0 1 1 1 1 HDOD domain DUF2063 PF09836.9 gi|389848865|ref|YP_006351102.1| - 0.022 15.0 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding domain Spo0M PF07070.11 gi|389848866|ref|YP_006351103.1| - 1.1e-75 253.8 0.1 1.3e-75 253.6 0.1 1.1 1 0 0 1 1 1 1 SpoOM protein Arrestin_C PF02752.22 gi|389848866|ref|YP_006351103.1| - 0.013 16.0 0.0 0.02 15.3 0.0 1.3 1 0 0 1 1 1 0 Arrestin (or S-antigen), C-terminal domain Na_H_Exchanger PF00999.21 gi|389848868|ref|YP_006351105.1| - 4.5e-36 124.4 38.6 6.4e-36 124.0 38.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.18 gi|389848868|ref|YP_006351105.1| - 2.8e-28 98.5 1.2 6.1e-28 97.4 1.2 1.6 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|389848868|ref|YP_006351105.1| - 3.9e-10 39.4 0.0 1.5e-09 37.6 0.0 2.1 2 0 0 2 2 1 1 TrkA-C domain F420_oxidored PF03807.17 gi|389848868|ref|YP_006351105.1| - 2e-06 28.3 0.4 5.5e-06 26.9 0.4 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|389848868|ref|YP_006351105.1| - 2e-05 25.0 0.1 4.5e-05 23.8 0.1 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|389848868|ref|YP_006351105.1| - 0.00054 19.6 0.1 0.00091 18.8 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|389848868|ref|YP_006351105.1| - 0.00066 20.2 0.0 0.0022 18.5 0.0 1.9 2 0 0 2 2 1 1 XdhC Rossmann domain Sacchrp_dh_NADP PF03435.18 gi|389848868|ref|YP_006351105.1| - 0.0017 18.6 0.2 0.0037 17.5 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|389848868|ref|YP_006351105.1| - 0.0017 18.0 0.1 0.0046 16.6 0.1 1.8 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|389848868|ref|YP_006351105.1| - 0.0032 17.4 1.0 0.0079 16.2 0.0 2.2 2 1 0 2 2 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|389848868|ref|YP_006351105.1| - 0.0042 16.5 0.1 0.025 14.0 0.1 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|389848868|ref|YP_006351105.1| - 0.0044 17.2 0.1 0.011 15.9 0.1 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase HI0933_like PF03486.14 gi|389848868|ref|YP_006351105.1| - 0.0051 15.6 0.0 0.0077 15.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|389848868|ref|YP_006351105.1| - 0.0082 15.4 0.1 0.012 14.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_10 PF13460.6 gi|389848868|ref|YP_006351105.1| - 0.0092 15.9 1.3 0.018 15.0 1.3 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Pyr_redox PF00070.27 gi|389848868|ref|YP_006351105.1| - 0.013 16.0 0.1 0.038 14.6 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|389848868|ref|YP_006351105.1| - 0.015 15.5 0.0 0.037 14.2 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Epimerase PF01370.21 gi|389848868|ref|YP_006351105.1| - 0.037 13.5 0.1 0.058 12.8 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.14 gi|389848868|ref|YP_006351105.1| - 0.051 12.8 0.1 0.1 11.8 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|389848868|ref|YP_006351105.1| - 0.16 11.2 0.1 0.25 10.5 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|389848868|ref|YP_006351105.1| - 1.8 7.8 6.8 0.066 12.5 0.7 1.7 2 0 0 2 2 1 0 Alanine dehydrogenase/PNT, C-terminal domain DLH PF01738.18 gi|389848869|ref|YP_006351106.1| - 6.3e-09 35.7 0.0 3.6e-08 33.2 0.0 1.8 1 1 1 2 2 2 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|389848869|ref|YP_006351106.1| - 2.3e-07 30.3 0.1 0.0012 18.2 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|389848869|ref|YP_006351106.1| - 0.00011 22.8 0.6 0.015 15.9 0.2 2.6 1 1 2 3 3 3 2 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|389848869|ref|YP_006351106.1| - 0.00013 21.7 0.1 0.13 11.8 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_4 PF08386.10 gi|389848869|ref|YP_006351106.1| - 0.00078 19.5 0.0 0.0016 18.5 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein Ser_hydrolase PF06821.13 gi|389848869|ref|YP_006351106.1| - 0.0075 16.1 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase DUF3530 PF12048.8 gi|389848869|ref|YP_006351106.1| - 0.012 15.1 0.0 0.022 14.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3530) Peptidase_S9 PF00326.21 gi|389848869|ref|YP_006351106.1| - 0.013 15.0 0.0 0.23 10.9 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase family BAAT_C PF08840.11 gi|389848869|ref|YP_006351106.1| - 0.069 13.1 0.1 11 5.9 0.0 2.2 1 1 1 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal AP_endonuc_2 PF01261.24 gi|389848870|ref|YP_006351107.1| - 4.1e-33 114.6 0.1 4.8e-33 114.4 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Phosphodiest PF01663.22 gi|389848871|ref|YP_006351108.1| - 1.3e-20 74.4 0.1 3.4e-15 56.5 0.1 2.1 1 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|389848871|ref|YP_006351108.1| - 0.0022 17.4 0.0 0.016 14.6 0.0 2.0 2 0 0 2 2 2 1 Metalloenzyme superfamily Type_ISP_C PF18135.1 gi|389848871|ref|YP_006351108.1| - 0.07 12.1 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Type ISP C-terminal specificity domain Acetyltransf_6 PF13480.7 gi|389848873|ref|YP_006351110.1| - 3.5e-21 75.9 0.0 9.6e-21 74.4 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|389848873|ref|YP_006351110.1| - 1.7e-05 23.9 0.0 0.067 12.1 0.0 2.4 2 0 0 2 2 2 2 FemAB family Putative_PNPOx PF01243.20 gi|389848874|ref|YP_006351111.1| - 1.8e-15 56.9 0.0 2.9e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|389848874|ref|YP_006351111.1| - 1e-11 45.0 0.2 1.1e-11 44.9 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|389848874|ref|YP_006351111.1| - 0.0076 15.8 0.0 0.0089 15.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like SSF PF00474.17 gi|389848875|ref|YP_006351112.1| - 6.3e-31 107.6 29.2 8.7e-31 107.2 29.2 1.1 1 0 0 1 1 1 1 Sodium:solute symporter family TENA_THI-4 PF03070.16 gi|389848876|ref|YP_006351113.1| - 5.8e-26 91.6 0.0 7e-26 91.3 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family PSK_trans_fac PF07704.11 gi|389848876|ref|YP_006351113.1| - 0.45 11.3 2.2 0.49 11.2 0.3 2.0 2 0 0 2 2 2 0 Rv0623-like transcription factor TENA_THI-4 PF03070.16 gi|389848877|ref|YP_006351114.1| - 9.9e-52 175.8 0.0 1.1e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TcdA_TcdB PF12919.7 gi|389848877|ref|YP_006351114.1| - 0.076 12.3 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain TBP PF00352.21 gi|389848878|ref|YP_006351115.1| - 1.3e-53 178.8 0.0 2.9e-27 94.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|389848878|ref|YP_006351115.1| - 5.5e-08 32.8 0.0 0.0011 19.0 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) T4bSS_IcmS PF12608.8 gi|389848878|ref|YP_006351115.1| - 0.0011 19.2 0.1 2 8.8 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017943.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017943.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017943.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloferax_mediterranei_ATCC_33500_uid167315/NC_017943.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:25:20 2019 # [ok]