#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|574087254|ref|YP_008997839.1|	-	2.9e-14	52.8	0.1	5.7e-14	51.9	0.1	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|574087254|ref|YP_008997839.1|	-	6.7e-11	42.6	0.0	1.5e-10	41.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|574087254|ref|YP_008997839.1|	-	4.5e-09	36.9	0.7	2.5e-08	34.5	0.1	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|574087254|ref|YP_008997839.1|	-	6.3e-09	36.3	0.0	3.2e-08	34.1	0.0	2.2	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
PaaX	PF07848.12	gi|574087254|ref|YP_008997839.1|	-	0.0025	18.0	0.0	0.0062	16.7	0.0	1.6	1	0	0	1	1	1	1	PaaX-like	protein
NACHT	PF05729.12	gi|574087254|ref|YP_008997839.1|	-	0.0075	16.2	0.0	0.018	15.0	0.0	1.6	2	0	0	2	2	2	1	NACHT	domain
ATPase_2	PF01637.18	gi|574087254|ref|YP_008997839.1|	-	0.021	14.7	0.0	0.077	12.9	0.0	1.9	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
DUF815	PF05673.13	gi|574087254|ref|YP_008997839.1|	-	0.026	13.7	0.0	0.045	12.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
Microtub_bd	PF16796.5	gi|574087254|ref|YP_008997839.1|	-	0.067	13.1	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	Microtubule	binding
Kinesin	PF00225.23	gi|574087254|ref|YP_008997839.1|	-	0.1	11.5	0.0	0.17	10.8	0.0	1.3	1	0	0	1	1	1	0	Kinesin	motor	domain
E1-E2_ATPase	PF00122.20	gi|564287501|ref|YP_008873694.1|	-	1.8e-51	174.2	0.5	3.4e-51	173.3	0.5	1.5	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564287501|ref|YP_008873694.1|	-	3.5e-45	154.9	4.7	5.8e-45	154.2	4.7	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564287501|ref|YP_008873694.1|	-	8.9e-06	26.2	1.0	0.00024	21.6	0.0	3.1	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564287501|ref|YP_008873694.1|	-	0.0002	21.7	0.0	0.00078	19.8	0.0	2.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564287501|ref|YP_008873694.1|	-	0.0011	18.8	0.7	0.0041	16.9	0.5	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
GST_C_2	PF13410.6	gi|564287501|ref|YP_008873694.1|	-	0.11	12.6	0.0	0.46	10.5	0.0	2.0	2	0	0	2	2	2	0	Glutathione	S-transferase,	C-terminal	domain
Usp	PF00582.26	gi|564287502|ref|YP_008873695.1|	-	1.3e-28	100.2	0.1	1.5e-28	100.1	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Activator-TraM	PF11657.8	gi|564287502|ref|YP_008873695.1|	-	0.031	14.1	0.1	0.039	13.8	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	activator	TraM
MaAIMP_sms	PF16951.5	gi|564287503|ref|YP_008873696.1|	-	0.12	12.1	0.0	0.14	11.9	0.0	1.1	1	0	0	1	1	1	0	Putative	methionine	and	alanine	importer,	small	subunit
Abhydrolase_1	PF00561.20	gi|564287505|ref|YP_008873699.1|	-	0.0046	16.6	0.5	0.3	10.7	0.0	2.7	3	0	0	3	3	3	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|564287505|ref|YP_008873699.1|	-	4.7	7.7	19.7	3.1e+02	1.8	19.8	2.8	1	1	1	2	2	2	0	Alpha/beta	hydrolase	family
HTH_5	PF01022.20	gi|564287506|ref|YP_008873700.1|	-	3.8e-13	49.1	0.1	1.8e-12	46.9	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|564287506|ref|YP_008873700.1|	-	4.6e-09	36.2	0.0	9.1e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287506|ref|YP_008873700.1|	-	3.7e-05	23.2	0.2	9.4e-05	21.9	0.2	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|564287506|ref|YP_008873700.1|	-	5.4e-05	23.1	0.2	7.2e-05	22.7	0.2	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|564287506|ref|YP_008873700.1|	-	0.0031	17.4	0.0	0.012	15.4	0.0	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|564287506|ref|YP_008873700.1|	-	0.0075	16.4	0.0	0.013	15.6	0.0	1.4	2	0	0	2	2	2	1	DprA	winged	helix	domain
HTH_IclR	PF09339.10	gi|564287506|ref|YP_008873700.1|	-	0.029	14.2	0.1	0.074	12.9	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF4364	PF14277.6	gi|564287506|ref|YP_008873700.1|	-	0.031	14.0	0.2	0.037	13.8	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_41	PF14502.6	gi|564287506|ref|YP_008873700.1|	-	0.051	13.3	0.0	0.093	12.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|564287506|ref|YP_008873700.1|	-	0.058	13.7	0.0	0.064	13.6	0.0	1.2	1	0	0	1	1	1	0	Penicillinase	repressor
HxlR	PF01638.17	gi|564287506|ref|YP_008873700.1|	-	0.1	12.5	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Cyd_oper_YbgE	PF09600.10	gi|564287772|ref|YP_008873701.1|	-	0.00032	21.0	1.2	0.00042	20.6	1.2	1.2	1	0	0	1	1	1	1	Cyd	operon	protein	YbgE	(Cyd_oper_YbgE)
Cdc6_C	PF09079.11	gi|574087256|ref|YP_008997840.1|	-	1.1e-11	44.5	0.2	1.4e-11	44.2	0.2	1.1	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
TrmB	PF01978.19	gi|564287507|ref|YP_008873703.1|	-	9.7e-08	31.8	0.0	2.3e-07	30.6	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564287507|ref|YP_008873703.1|	-	0.006	16.4	0.3	0.023	14.5	0.0	2.1	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
Spiralin	PF05215.13	gi|564287507|ref|YP_008873703.1|	-	0.049	13.0	0.0	0.082	12.2	0.0	1.3	1	0	0	1	1	1	0	Spiralin
HTH_DeoR	PF08220.12	gi|564287507|ref|YP_008873703.1|	-	0.061	13.1	0.1	0.14	11.9	0.1	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
F-112	PF09645.10	gi|564287507|ref|YP_008873703.1|	-	0.17	12.0	0.0	0.29	11.3	0.0	1.4	1	0	0	1	1	1	0	F-112	protein
UPF0175	PF03683.13	gi|564287508|ref|YP_008873704.1|	-	1.1e-15	57.0	0.4	1.7e-15	56.5	0.4	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|564287508|ref|YP_008873704.1|	-	0.0058	16.5	0.0	0.018	15.0	0.0	1.9	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParD_antitoxin	PF03693.14	gi|564287508|ref|YP_008873704.1|	-	0.068	13.6	0.1	0.088	13.2	0.1	1.2	1	0	0	1	1	1	0	Bacterial	antitoxin	of	ParD	toxin-antitoxin	type	II	system	and	RHH
PAS_8	PF13188.7	gi|564287509|ref|YP_008873705.1|	-	0.043	13.8	0.1	0.1	12.6	0.1	1.7	1	1	0	1	1	1	0	PAS	domain
AAA_31	PF13614.6	gi|564287511|ref|YP_008873707.1|	-	5.7e-20	72.0	0.0	9.3e-20	71.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287511|ref|YP_008873707.1|	-	1.5e-14	54.1	0.0	2.4e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|564287511|ref|YP_008873707.1|	-	4.7e-05	22.8	0.0	0.00076	18.8	0.0	2.1	2	0	0	2	2	2	1	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|564287511|ref|YP_008873707.1|	-	8.3e-05	22.2	0.0	0.0011	18.5	0.0	2.1	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|564287511|ref|YP_008873707.1|	-	0.00023	20.7	0.0	0.00038	20.0	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|564287511|ref|YP_008873707.1|	-	0.0017	17.6	0.0	0.0024	17.1	0.0	1.3	1	0	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|564287511|ref|YP_008873707.1|	-	0.054	12.9	0.0	0.08	12.4	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SpoIIIAH	PF12685.7	gi|564287512|ref|YP_008873708.1|	-	0.65	9.8	10.6	0.77	9.6	10.6	1.2	1	0	0	1	1	1	0	SpoIIIAH-like	protein
Nop14	PF04147.12	gi|564287512|ref|YP_008873708.1|	-	1.5	6.9	15.1	1.5	6.9	15.1	1.1	1	0	0	1	1	1	0	Nop14-like	family
Apt1	PF10351.9	gi|564287512|ref|YP_008873708.1|	-	1.9	7.2	6.6	2	7.2	6.6	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
Sporozoite_P67	PF05642.11	gi|564287512|ref|YP_008873708.1|	-	4.6	5.2	12.7	5.9	4.8	12.7	1.1	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
CDC45	PF02724.14	gi|564287512|ref|YP_008873708.1|	-	5.5	5.2	10.9	5.9	5.1	10.9	1.1	1	0	0	1	1	1	0	CDC45-like	protein
SDA1	PF05285.12	gi|564287512|ref|YP_008873708.1|	-	6.4	6.1	17.1	7	6.0	17.1	1.1	1	0	0	1	1	1	0	SDA1
GREB1	PF15782.5	gi|564287512|ref|YP_008873708.1|	-	9.4	3.2	5.6	9.5	3.2	5.6	1.0	1	0	0	1	1	1	0	Gene	regulated	by	oestrogen	in	breast	cancer
PI3K_1B_p101	PF10486.9	gi|564287512|ref|YP_008873708.1|	-	9.6	3.8	8.9	10	3.7	8.9	1.1	1	0	0	1	1	1	0	Phosphoinositide	3-kinase	gamma	adapter	protein	p101	subunit
MFS_3	PF05977.13	gi|564287774|ref|YP_008873709.1|	-	0.00023	19.7	0.3	0.00027	19.5	0.3	1.0	1	0	0	1	1	1	1	Transmembrane	secretion	effector
UvrD-helicase	PF00580.21	gi|564287513|ref|YP_008873710.1|	-	2.3e-47	162.0	0.0	4.3e-47	161.2	0.0	1.5	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
UvrD_C	PF13361.6	gi|564287513|ref|YP_008873710.1|	-	2.1e-33	116.2	0.0	8.3e-21	74.7	0.0	2.3	1	1	1	2	2	2	2	UvrD-like	helicase	C-terminal	domain
AAA_19	PF13245.6	gi|564287513|ref|YP_008873710.1|	-	5.1e-24	85.3	0.0	6.6e-23	81.7	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
UvrD_C_2	PF13538.6	gi|564287513|ref|YP_008873710.1|	-	1.6e-10	40.6	0.0	0.0003	20.6	0.0	2.6	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
PDDEXK_1	PF12705.7	gi|564287513|ref|YP_008873710.1|	-	3.1e-09	37.1	0.5	1.2e-07	31.9	0.4	2.7	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
Viral_helicase1	PF01443.18	gi|564287513|ref|YP_008873710.1|	-	7e-05	22.7	0.3	13	5.4	0.0	4.3	4	0	0	4	4	4	2	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|564287513|ref|YP_008873710.1|	-	0.00014	21.6	0.0	0.0024	17.6	0.0	2.7	4	0	0	4	4	4	1	AAA	domain
AAA_12	PF13087.6	gi|564287513|ref|YP_008873710.1|	-	0.1	12.2	0.0	1.4	8.5	0.0	2.6	2	2	0	2	2	2	0	AAA	domain
Cas_Cas4	PF01930.17	gi|564287513|ref|YP_008873710.1|	-	0.16	12.1	0.0	0.38	10.9	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF83
SicP-binding	PF09119.10	gi|564287513|ref|YP_008873710.1|	-	0.17	11.9	0.0	0.43	10.6	0.0	1.7	1	0	0	1	1	1	0	SicP	binding
PDDEXK_1	PF12705.7	gi|564287514|ref|YP_008873711.1|	-	6.2e-11	42.7	0.0	2.8e-10	40.6	0.0	2.2	2	1	0	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
CutA1	PF03091.15	gi|564287515|ref|YP_008873712.1|	-	2.2e-28	98.0	0.0	2.4e-28	97.9	0.0	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
DUF4191	PF13829.6	gi|564287516|ref|YP_008873713.1|	-	1.2	8.4	2.9	1.4	8.2	2.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Glyoxalase_6	PF18029.1	gi|564287517|ref|YP_008873715.1|	-	1.1e-21	77.6	0.0	1.2e-21	77.4	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase-like	domain
Crystall_2	PF09076.10	gi|564287519|ref|YP_008873717.1|	-	0.071	13.0	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Beta/Gamma	crystallin
TOBE_2	PF08402.10	gi|564287519|ref|YP_008873717.1|	-	0.23	11.7	1.3	3.3	8.0	0.9	2.0	1	1	1	2	2	2	0	TOBE	domain
Tropomyosin	PF00261.20	gi|564287520|ref|YP_008873718.1|	-	0.00068	19.1	7.7	0.0011	18.4	7.7	1.3	1	0	0	1	1	1	1	Tropomyosin
Baculo_PEP_C	PF04513.12	gi|564287520|ref|YP_008873718.1|	-	0.0075	16.3	0.9	0.013	15.5	0.7	1.5	1	1	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Jnk-SapK_ap_N	PF09744.9	gi|564287520|ref|YP_008873718.1|	-	0.0097	16.1	2.2	0.017	15.3	2.2	1.4	1	0	0	1	1	1	1	JNK_SAPK-associated	protein-1
Herpes_UL25	PF01499.16	gi|564287520|ref|YP_008873718.1|	-	0.015	13.9	2.1	0.018	13.6	2.1	1.1	1	0	0	1	1	1	0	Herpesvirus	UL25	family
DASH_Spc19	PF08287.11	gi|564287520|ref|YP_008873718.1|	-	0.016	15.1	3.7	0.029	14.3	3.7	1.4	1	0	0	1	1	1	0	Spc19
MCC-bdg_PDZ	PF10506.9	gi|564287520|ref|YP_008873718.1|	-	0.028	14.5	0.1	0.89	9.6	0.0	2.6	2	1	0	3	3	2	0	PDZ	domain	of	MCC-2	bdg	protein	for	Usher	syndrome
ABC_tran_CTD	PF16326.5	gi|564287520|ref|YP_008873718.1|	-	0.031	14.5	9.0	0.43	10.8	2.5	3.2	2	1	1	3	3	3	0	ABC	transporter	C-terminal	domain
Spc7	PF08317.11	gi|564287520|ref|YP_008873718.1|	-	0.045	12.6	5.3	0.067	12.1	5.3	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Synaptobrevin	PF00957.21	gi|564287520|ref|YP_008873718.1|	-	0.11	12.2	1.2	0.22	11.3	1.2	1.5	1	0	0	1	1	1	0	Synaptobrevin
LPP	PF04728.13	gi|564287520|ref|YP_008873718.1|	-	0.13	12.6	0.6	0.13	12.6	0.6	2.9	1	1	1	3	3	3	0	Lipoprotein	leucine-zipper
CSN5_C	PF18323.1	gi|564287520|ref|YP_008873718.1|	-	0.36	11.8	2.3	1.2	10.1	2.2	2.0	1	1	0	1	1	1	0	Cop9	signalosome	subunit	5	C-terminal	domain
DUF1664	PF07889.12	gi|564287520|ref|YP_008873718.1|	-	0.71	9.9	5.7	1.3	9.0	0.3	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF4407	PF14362.6	gi|564287520|ref|YP_008873718.1|	-	0.76	9.1	10.2	1.4	8.2	10.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
BST2	PF16716.5	gi|564287520|ref|YP_008873718.1|	-	0.91	10.1	6.8	3.1	8.5	6.2	2.0	1	1	1	2	2	2	0	Bone	marrow	stromal	antigen	2
Mce4_CUP1	PF11887.8	gi|564287520|ref|YP_008873718.1|	-	1.9	7.9	6.3	3.1	7.2	6.3	1.2	1	0	0	1	1	1	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
XhlA	PF10779.9	gi|564287520|ref|YP_008873718.1|	-	4.3	7.6	7.0	28	5.0	0.6	3.2	2	1	1	3	3	3	0	Haemolysin	XhlA
PadR	PF03551.14	gi|564287523|ref|YP_008873721.1|	-	3.7e-13	49.2	0.1	4.5e-13	49.0	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF4364	PF14277.6	gi|564287523|ref|YP_008873721.1|	-	0.0053	16.5	0.0	0.0073	16.1	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.6	gi|564287523|ref|YP_008873721.1|	-	0.007	16.3	0.0	0.012	15.6	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HxlR	PF01638.17	gi|564287523|ref|YP_008873721.1|	-	0.0095	15.8	0.0	0.014	15.3	0.0	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
FUR	PF01475.19	gi|564287523|ref|YP_008873721.1|	-	0.017	15.3	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
RTP	PF02334.16	gi|564287523|ref|YP_008873721.1|	-	0.02	15.5	0.0	0.032	14.9	0.0	1.3	1	1	0	1	1	1	0	Replication	terminator	protein
HTH_34	PF13601.6	gi|564287523|ref|YP_008873721.1|	-	0.1	12.8	0.0	0.15	12.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|564287523|ref|YP_008873721.1|	-	0.18	11.6	0.0	0.26	11.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_24	PF13412.6	gi|574087259|ref|YP_008997842.1|	-	1.3e-06	27.8	0.0	2e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|574087259|ref|YP_008997842.1|	-	1.3e-05	25.1	0.0	1.6e-05	24.8	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|574087259|ref|YP_008997842.1|	-	2.4e-05	24.1	0.3	3.7e-05	23.5	0.3	1.5	1	1	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|574087259|ref|YP_008997842.1|	-	9.4e-05	22.2	0.0	0.00015	21.6	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|574087259|ref|YP_008997842.1|	-	0.00016	21.5	0.1	0.00026	20.9	0.1	1.4	1	1	0	1	1	1	1	MarR	family
Replic_Relax	PF13814.6	gi|574087259|ref|YP_008997842.1|	-	0.0004	20.5	0.0	0.00044	20.4	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_20	PF12840.7	gi|574087259|ref|YP_008997842.1|	-	0.00064	19.7	0.1	0.00082	19.4	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|574087259|ref|YP_008997842.1|	-	0.0007	19.5	0.1	0.0013	18.6	0.1	1.5	1	1	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.20	gi|574087259|ref|YP_008997842.1|	-	0.00083	19.2	0.0	0.0012	18.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|574087259|ref|YP_008997842.1|	-	0.0011	19.2	0.0	0.0014	19.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_27	PF13463.6	gi|574087259|ref|YP_008997842.1|	-	0.0037	17.7	0.0	0.0046	17.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Mnd1	PF03962.15	gi|574087259|ref|YP_008997842.1|	-	0.0053	17.0	0.0	0.0078	16.5	0.0	1.2	1	0	0	1	1	1	1	Mnd1	HTH	domain
HTH_10	PF04967.12	gi|574087259|ref|YP_008997842.1|	-	0.013	15.3	0.0	0.021	14.6	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
FaeA	PF04703.12	gi|574087259|ref|YP_008997842.1|	-	0.014	15.8	0.1	0.022	15.1	0.0	1.4	2	0	0	2	2	1	0	FaeA-like	protein
DUF4423	PF14394.6	gi|574087259|ref|YP_008997842.1|	-	0.014	15.1	0.0	0.018	14.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF505	PF04458.12	gi|574087259|ref|YP_008997842.1|	-	0.018	13.5	0.0	0.02	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_IclR	PF09339.10	gi|574087259|ref|YP_008997842.1|	-	0.026	14.3	0.1	0.035	13.9	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|574087259|ref|YP_008997842.1|	-	0.028	14.6	0.1	0.036	14.3	0.1	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|574087259|ref|YP_008997842.1|	-	0.032	14.0	0.0	0.043	13.6	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
TrmB	PF01978.19	gi|574087259|ref|YP_008997842.1|	-	0.038	13.9	0.0	0.049	13.5	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|574087259|ref|YP_008997842.1|	-	0.04	13.9	0.1	0.054	13.4	0.1	1.2	1	0	0	1	1	1	0	HTH	domain
HxlR	PF01638.17	gi|574087259|ref|YP_008997842.1|	-	0.044	13.6	0.0	0.051	13.4	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_CodY	PF08222.11	gi|574087259|ref|YP_008997842.1|	-	0.049	13.2	0.0	0.074	12.6	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_45	PF14947.6	gi|574087259|ref|YP_008997842.1|	-	0.053	13.5	0.0	0.065	13.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Sigma70_r4	PF04545.16	gi|574087259|ref|YP_008997842.1|	-	0.071	12.6	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
PadR	PF03551.14	gi|574087259|ref|YP_008997842.1|	-	0.11	12.4	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
LexA_DNA_bind	PF01726.16	gi|574087259|ref|YP_008997842.1|	-	0.12	12.2	0.1	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Crp	PF00325.20	gi|574087259|ref|YP_008997842.1|	-	0.13	11.9	0.2	0.2	11.3	0.2	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
Phage_rep_O	PF04492.13	gi|574087259|ref|YP_008997842.1|	-	0.16	12.6	0.0	0.2	12.2	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
MRF_C2	PF13888.6	gi|564287776|ref|YP_008873724.1|	-	0.022	14.7	0.1	0.037	13.9	0.1	1.3	1	0	0	1	1	1	0	Myelin	gene	regulatory	factor	C-terminal	domain	2
DUF4878	PF12870.7	gi|564287777|ref|YP_008873725.1|	-	0.004	17.4	0.1	0.0083	16.4	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4878)
Radical_SAM	PF04055.21	gi|564287526|ref|YP_008873726.1|	-	4.8e-08	33.6	0.1	8.4e-07	29.5	0.1	2.7	1	1	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|564287527|ref|YP_008873727.1|	-	3.1e-10	40.7	0.0	1.9e-09	38.1	0.0	2.3	2	2	1	3	3	3	1	Radical	SAM	superfamily
Transcrip_reg	PF01709.20	gi|564287527|ref|YP_008873727.1|	-	0.14	11.6	0.2	0.29	10.5	0.0	1.5	2	0	0	2	2	2	0	Transcriptional	regulator
META	PF03724.16	gi|564287528|ref|YP_008873728.1|	-	4.1e-05	23.5	1.8	0.056	13.4	0.4	2.8	2	1	0	2	2	2	2	META	domain
HTH_20	PF12840.7	gi|564287529|ref|YP_008873729.1|	-	4.1e-14	52.4	0.1	8.5e-14	51.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287529|ref|YP_008873729.1|	-	4.8e-08	32.8	0.1	2e-07	30.8	0.1	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564287529|ref|YP_008873729.1|	-	1.6e-07	31.1	0.0	2.5e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564287529|ref|YP_008873729.1|	-	1.1e-05	24.9	0.0	2e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|564287529|ref|YP_008873729.1|	-	0.0011	18.9	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Sigma70_r4	PF04545.16	gi|564287529|ref|YP_008873729.1|	-	0.027	14.0	0.0	0.047	13.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
COG5	PF10392.9	gi|564287529|ref|YP_008873729.1|	-	0.028	14.6	0.0	0.076	13.2	0.1	1.6	2	0	0	2	2	2	0	Golgi	transport	complex	subunit	5
HTH_27	PF13463.6	gi|564287529|ref|YP_008873729.1|	-	0.028	14.9	0.0	0.053	14.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|564287529|ref|YP_008873729.1|	-	0.056	13.3	0.0	0.098	12.6	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.10	gi|564287529|ref|YP_008873729.1|	-	0.13	12.2	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_11	PF08279.12	gi|564287529|ref|YP_008873729.1|	-	0.17	11.8	0.1	0.29	11.1	0.1	1.4	1	0	0	1	1	1	0	HTH	domain
Wzy_C_2	PF11846.8	gi|564287531|ref|YP_008873731.1|	-	0.3	11.0	2.5	0.19	11.7	0.9	1.4	2	0	0	2	2	2	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
PHD_like	PF12910.7	gi|564287534|ref|YP_008873734.1|	-	0.011	15.8	0.0	0.014	15.4	0.0	1.1	1	0	0	1	1	1	0	Antitoxin	of	toxin-antitoxin,	RelE	/	RelB,	TA	system
DUF3828	PF12883.7	gi|564287534|ref|YP_008873734.1|	-	0.029	14.7	0.1	0.043	14.2	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3828)
Frankia_peptide	PF14407.6	gi|564287534|ref|YP_008873734.1|	-	0.1	12.6	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Ribosomally	synthesized	peptide	prototyped	by	Frankia	Franean1_4349.
HicA_toxin	PF07927.12	gi|564287535|ref|YP_008873735.1|	-	1.7e-15	56.8	0.0	2.1e-15	56.5	0.0	1.1	1	0	0	1	1	1	1	HicA	toxin	of	bacterial	toxin-antitoxin,
Fic	PF02661.18	gi|564287538|ref|YP_008873739.1|	-	6.3e-08	33.4	0.0	1.7e-07	32.0	0.0	1.7	1	1	0	1	1	1	1	Fic/DOC	family
OrfB_IS605	PF01385.19	gi|564287542|ref|YP_008873743.1|	-	8.7e-18	64.7	0.1	6.6e-17	61.8	0.0	2.4	2	1	0	2	2	2	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.11	gi|564287542|ref|YP_008873743.1|	-	1.8e-17	63.0	2.3	3.9e-17	61.9	1.6	2.0	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
ArfGap	PF01412.18	gi|564287542|ref|YP_008873743.1|	-	0.092	12.8	1.4	0.29	11.2	1.4	1.8	1	0	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
zf_Rg	PF17915.1	gi|564287542|ref|YP_008873743.1|	-	0.12	11.8	2.9	0.49	9.8	2.2	2.1	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
DUF2484	PF10658.9	gi|564287779|ref|YP_008873744.1|	-	0.33	11.3	8.3	0.6	10.5	5.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2484)
DUF3784	PF12650.7	gi|564287779|ref|YP_008873744.1|	-	0.43	10.8	4.6	6.1	7.1	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
Lon_C	PF05362.13	gi|574087261|ref|YP_008997843.1|	-	6.8e-08	32.3	0.1	1.1e-07	31.6	0.1	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
ChlI	PF13541.6	gi|574087261|ref|YP_008997843.1|	-	2.6e-05	24.1	0.0	7.6e-05	22.6	0.0	1.7	2	0	0	2	2	2	1	Subunit	ChlI	of	Mg-chelatase
TrbC	PF04956.13	gi|564287784|ref|YP_008873751.1|	-	0.017	15.3	5.0	0.04	14.1	5.0	1.7	1	1	0	1	1	1	0	TrbC/VIRB2	family
DUF4134	PF13572.6	gi|564287784|ref|YP_008873751.1|	-	0.042	14.1	1.9	0.12	12.7	1.9	1.8	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4134)
Transthyretin	PF00576.21	gi|574087262|ref|YP_008997844.1|	-	0.0049	17.5	0.2	0.26	12.0	0.0	2.9	3	0	0	3	3	3	1	HIUase/Transthyretin	family
Big_1	PF02369.16	gi|574087262|ref|YP_008997844.1|	-	0.0055	16.7	0.6	0.0055	16.7	0.6	2.0	2	0	0	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
AAA_10	PF12846.7	gi|564287787|ref|YP_008873754.1|	-	4.1e-07	29.2	0.6	0.0031	16.5	0.0	2.6	3	0	0	3	3	3	2	AAA-like	domain
DUF87	PF01935.17	gi|564287787|ref|YP_008873754.1|	-	1.9e-06	28.1	0.0	1.9e-06	28.1	0.0	2.8	3	0	0	3	3	3	1	Helicase	HerA,	central	domain
AAA_22	PF13401.6	gi|564287787|ref|YP_008873754.1|	-	0.0015	18.8	0.4	0.38	11.0	0.1	2.9	3	0	0	3	3	3	1	AAA	domain
DEAD	PF00270.29	gi|564287787|ref|YP_008873754.1|	-	0.014	15.2	0.0	2.5	7.9	0.0	2.7	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_29	PF13555.6	gi|564287787|ref|YP_008873754.1|	-	0.025	14.3	0.0	0.075	12.8	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|564287787|ref|YP_008873754.1|	-	0.026	14.9	0.0	4.4	7.7	0.0	2.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FtsK_SpoIIIE	PF01580.18	gi|564287787|ref|YP_008873754.1|	-	0.038	13.3	0.0	0.092	12.1	0.0	1.6	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Mg_chelatase	PF01078.21	gi|564287787|ref|YP_008873754.1|	-	0.042	13.2	0.0	0.62	9.4	0.0	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.6	gi|564287787|ref|YP_008873754.1|	-	0.05	14.0	0.6	2.5	8.4	0.0	3.0	3	1	0	3	3	3	0	AAA	ATPase	domain
SbcD_C	PF12320.8	gi|564287787|ref|YP_008873754.1|	-	0.063	13.6	0.9	0.25	11.6	0.9	2.1	1	0	0	1	1	1	0	Type	5	capsule	protein	repressor	C-terminal	domain
PrgI	PF12666.7	gi|564287789|ref|YP_008873756.1|	-	5.7e-05	23.8	0.1	7.3e-05	23.4	0.1	1.1	1	0	0	1	1	1	1	PrgI	family	protein
DUF3487	PF11990.8	gi|564287789|ref|YP_008873756.1|	-	0.0066	16.3	0.1	0.0094	15.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3487)
PIN	PF01850.21	gi|564287545|ref|YP_008873757.1|	-	2.9e-09	37.5	0.0	3.6e-09	37.2	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
YmgD	PF16456.5	gi|564287545|ref|YP_008873757.1|	-	0.0053	16.8	0.0	0.032	14.3	0.0	1.9	1	1	1	2	2	2	1	YmgD	protein
DUF3618	PF12277.8	gi|564287545|ref|YP_008873757.1|	-	0.13	12.6	2.2	0.21	11.9	2.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3618)
VAPB_antitox	PF02697.14	gi|564287546|ref|YP_008873758.1|	-	5.1e-13	49.6	3.9	6e-13	49.4	3.9	1.1	1	0	0	1	1	1	1	Putative	antitoxin
Cupin_4	PF08007.12	gi|564287546|ref|YP_008873758.1|	-	0.024	14.1	0.4	0.027	13.9	0.4	1.0	1	0	0	1	1	1	0	Cupin	superfamily	protein
AAA_10	PF12846.7	gi|564287546|ref|YP_008873758.1|	-	0.04	12.8	0.1	0.042	12.8	0.1	1.0	1	0	0	1	1	1	0	AAA-like	domain
BLOC1_2	PF10046.9	gi|564287546|ref|YP_008873758.1|	-	0.043	14.1	0.4	0.14	12.5	0.1	1.7	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
EspB	PF05802.11	gi|564287546|ref|YP_008873758.1|	-	0.089	12.8	1.1	0.54	10.2	0.2	1.9	2	0	0	2	2	2	0	Enterobacterial	EspB	protein
zf-ribbon_3	PF13248.6	gi|564287790|ref|YP_008873760.1|	-	0.77	9.2	0.1	0.77	9.2	0.1	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
Rhodanese_C	PF12368.8	gi|564287790|ref|YP_008873760.1|	-	2.9	8.3	10.2	0.74	10.2	3.2	2.3	2	0	0	2	2	2	0	Rhodanase	C-terminal
PRCC	PF10253.9	gi|574087263|ref|YP_008873762.2|	-	0.018	15.8	0.4	0.022	15.5	0.4	1.1	1	0	0	1	1	1	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
Shisa	PF13908.6	gi|574087263|ref|YP_008873762.2|	-	0.032	14.5	0.1	0.051	13.8	0.1	1.3	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
REPA_OB_2	PF16900.5	gi|564287549|ref|YP_008873763.1|	-	0.0017	18.2	0.0	0.0046	16.9	0.0	1.7	2	0	0	2	2	2	1	Replication	protein	A	OB	domain
tRNA_anti-codon	PF01336.25	gi|564287549|ref|YP_008873763.1|	-	0.0021	18.0	0.1	0.0039	17.1	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
CDC24_OB3	PF17244.2	gi|564287549|ref|YP_008873763.1|	-	0.2	11.4	0.0	0.37	10.5	0.0	1.3	1	0	0	1	1	1	0	Cell	division	control	protein	24,	OB	domain	3
TrmB	PF01978.19	gi|564287550|ref|YP_008873764.1|	-	1.2e-08	34.7	0.9	4.4e-08	32.9	0.2	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564287550|ref|YP_008873764.1|	-	4.7e-05	23.4	0.5	0.0001	22.3	0.3	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287550|ref|YP_008873764.1|	-	7.6e-05	22.2	0.0	0.006	16.1	0.0	3.1	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
F-112	PF09645.10	gi|564287550|ref|YP_008873764.1|	-	0.00084	19.4	0.0	0.59	10.3	0.0	2.2	2	0	0	2	2	2	2	F-112	protein
HTH_IclR	PF09339.10	gi|564287550|ref|YP_008873764.1|	-	0.0041	16.9	1.0	0.014	15.1	0.1	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564287550|ref|YP_008873764.1|	-	0.006	17.1	0.1	0.016	15.7	0.1	1.9	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|564287550|ref|YP_008873764.1|	-	0.0068	16.3	0.8	0.018	15.0	0.1	2.1	2	1	1	3	3	3	1	MarR	family
HTH_5	PF01022.20	gi|564287550|ref|YP_008873764.1|	-	0.029	14.2	0.0	0.12	12.3	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|564287550|ref|YP_008873764.1|	-	0.18	12.0	0.2	7.4	6.8	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|574087264|ref|YP_008997845.1|	-	8.5e-07	28.8	0.0	1.2e-06	28.4	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_29	PF13551.6	gi|574087264|ref|YP_008997845.1|	-	0.02	14.9	0.0	0.026	14.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|574087264|ref|YP_008997845.1|	-	0.043	13.6	0.0	0.067	13.0	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
GntR	PF00392.21	gi|574087264|ref|YP_008997845.1|	-	0.051	13.2	0.0	0.071	12.8	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.6	gi|574087264|ref|YP_008997845.1|	-	0.075	13.0	0.0	0.096	12.7	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|574087264|ref|YP_008997845.1|	-	0.086	12.7	0.0	0.17	11.7	0.0	1.5	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_CodY	PF08222.11	gi|574087264|ref|YP_008997845.1|	-	0.093	12.3	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
MarR_2	PF12802.7	gi|574087264|ref|YP_008997845.1|	-	0.12	12.3	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Glyoxalase	PF00903.25	gi|564287793|ref|YP_008873767.1|	-	1e-06	28.9	0.3	1.6e-06	28.4	0.3	1.3	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|564287793|ref|YP_008873767.1|	-	0.013	15.7	0.4	0.029	14.6	0.4	1.6	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|564287793|ref|YP_008873767.1|	-	0.02	15.0	3.5	1.7	8.7	3.5	2.2	1	1	0	1	1	1	0	Glyoxalase-like	domain
MazE_antitoxin	PF04014.18	gi|564287552|ref|YP_008873769.1|	-	0.00014	21.7	0.1	0.00023	21.0	0.1	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|564287552|ref|YP_008873769.1|	-	0.002	18.5	0.0	0.0025	18.2	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
zf-HC2	PF13490.6	gi|564287552|ref|YP_008873769.1|	-	0.08	13.2	0.2	0.13	12.5	0.2	1.4	1	0	0	1	1	1	0	Putative	zinc-finger
PIN	PF01850.21	gi|564287553|ref|YP_008873770.1|	-	1.2e-17	64.6	0.3	1.3e-17	64.4	0.3	1.0	1	0	0	1	1	1	1	PIN	domain
TrwB_AAD_bind	PF10412.9	gi|564287555|ref|YP_008873772.1|	-	3.8e-17	62.3	0.0	5.1e-17	61.9	0.0	1.1	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|564287555|ref|YP_008873772.1|	-	9.3e-12	45.0	0.4	1.8e-11	44.1	0.0	1.7	2	0	0	2	2	2	1	TraM	recognition	site	of	TraD	and	TraG
T4SS-DNA_transf	PF02534.14	gi|564287555|ref|YP_008873772.1|	-	0.00079	18.3	0.0	0.0012	17.8	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
D123	PF07065.14	gi|564287555|ref|YP_008873772.1|	-	0.77	8.9	0.0	0.77	8.9	0.0	2.2	2	0	0	2	2	2	0	D123
HlyE	PF06109.13	gi|564287797|ref|YP_008873777.1|	-	0.031	13.6	0.0	0.035	13.4	0.0	1.1	1	0	0	1	1	1	0	Haemolysin	E	(HlyE)
SbcCD_C	PF13558.6	gi|564287558|ref|YP_008873778.1|	-	8.2e-09	35.6	0.0	1.8e-08	34.5	0.0	1.6	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
Spc7	PF08317.11	gi|564287558|ref|YP_008873778.1|	-	2.6e-06	26.5	42.4	0.00036	19.5	19.5	2.9	2	1	0	2	2	2	2	Spc7	kinetochore	protein
AAA_13	PF13166.6	gi|564287558|ref|YP_008873778.1|	-	6.9e-06	25.0	26.9	1.6e-05	23.8	2.3	3.5	1	1	1	2	2	2	1	AAA	domain
CENP-F_leu_zip	PF10473.9	gi|564287558|ref|YP_008873778.1|	-	6.1e-05	23.1	42.5	0.082	12.9	12.6	3.7	2	1	1	3	3	3	3	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF2326	PF10088.9	gi|564287558|ref|YP_008873778.1|	-	0.00011	22.0	0.6	0.00074	19.3	0.1	2.5	2	0	0	2	2	2	1	Uncharacterised	protein	conserved	in	bacteria	(DUF2326)
Tropomyosin_1	PF12718.7	gi|564287558|ref|YP_008873778.1|	-	0.00025	21.2	21.9	0.00025	21.2	21.9	3.4	2	1	1	3	3	3	1	Tropomyosin	like
TPR_MLP1_2	PF07926.12	gi|564287558|ref|YP_008873778.1|	-	0.00048	20.2	37.4	0.0091	16.1	1.1	4.4	3	1	1	4	4	4	2	TPR/MLP1/MLP2-like	protein
CALCOCO1	PF07888.11	gi|564287558|ref|YP_008873778.1|	-	0.0019	17.2	16.8	0.0019	17.2	16.8	2.2	1	1	1	2	2	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
THOC7	PF05615.13	gi|564287558|ref|YP_008873778.1|	-	0.0091	16.3	9.3	0.0091	16.3	9.3	4.3	1	1	3	4	4	3	1	Tho	complex	subunit	7
DUF1664	PF07889.12	gi|564287558|ref|YP_008873778.1|	-	0.0093	16.0	27.7	0.12	12.4	1.0	4.3	2	2	3	5	5	5	2	Protein	of	unknown	function	(DUF1664)
Seryl_tRNA_N	PF02403.22	gi|564287558|ref|YP_008873778.1|	-	0.023	14.9	28.9	0.042	14.1	0.8	4.5	3	1	1	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
zf-Di19	PF05605.12	gi|564287558|ref|YP_008873778.1|	-	0.025	14.9	0.2	7.3	7.0	0.1	2.5	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF4140	PF13600.6	gi|564287558|ref|YP_008873778.1|	-	0.027	14.9	0.7	0.027	14.9	0.7	5.1	4	2	2	6	6	5	0	N-terminal	domain	of	unknown	function	(DUF4140)
FlaC_arch	PF05377.11	gi|564287558|ref|YP_008873778.1|	-	0.055	13.9	1.1	0.055	13.9	1.1	6.5	4	2	1	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
Prefoldin_2	PF01920.20	gi|564287558|ref|YP_008873778.1|	-	0.058	13.3	39.8	0.12	12.4	1.6	5.3	4	2	1	5	5	5	0	Prefoldin	subunit
DUF3450	PF11932.8	gi|564287558|ref|YP_008873778.1|	-	0.16	11.3	41.1	0.24	10.7	1.3	4.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF3450)
IBV_3A	PF03617.13	gi|564287558|ref|YP_008873778.1|	-	0.17	11.9	0.5	0.41	10.7	0.5	1.5	1	0	0	1	1	1	0	IBV	3A	protein
zf-ribbon_3	PF13248.6	gi|564287558|ref|YP_008873778.1|	-	0.21	11.0	5.4	1.6	8.3	5.4	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
BLOC1_2	PF10046.9	gi|564287558|ref|YP_008873778.1|	-	0.22	11.8	31.2	0.22	11.8	0.9	4.4	3	1	0	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
L31	PF09784.9	gi|564287558|ref|YP_008873778.1|	-	0.25	11.8	5.5	0.37	11.2	0.0	2.9	2	1	0	3	3	3	0	Mitochondrial	ribosomal	protein	L31
AAA_23	PF13476.6	gi|564287558|ref|YP_008873778.1|	-	0.35	11.3	55.8	1.8e+04	-17.3	55.8	4.4	1	1	0	1	1	0	0	AAA	domain
ZapB	PF06005.12	gi|564287558|ref|YP_008873778.1|	-	0.37	11.3	47.0	0.14	12.6	4.5	4.9	2	2	2	4	4	3	0	Cell	division	protein	ZapB
dCache_1	PF02743.18	gi|564287558|ref|YP_008873778.1|	-	0.47	10.2	3.9	0.71	9.6	0.1	2.5	1	1	1	2	2	2	0	Cache	domain
FapA	PF03961.13	gi|564287558|ref|YP_008873778.1|	-	1.1	7.8	25.3	1.9	7.0	11.0	2.9	2	1	0	2	2	2	0	Flagellar	Assembly	Protein	A
GCN5L1	PF06320.13	gi|564287558|ref|YP_008873778.1|	-	1.3	9.2	17.8	3.2	7.9	0.2	3.9	2	2	1	3	3	3	0	GCN5-like	protein	1	(GCN5L1)
MCPsignal	PF00015.21	gi|564287558|ref|YP_008873778.1|	-	1.5	8.6	10.6	3	7.6	0.5	2.9	2	1	1	3	3	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PI3K_P85_iSH2	PF16454.5	gi|564287558|ref|YP_008873778.1|	-	2	8.0	37.9	0.12	11.9	0.5	4.3	2	2	2	4	4	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
DUF3584	PF12128.8	gi|564287558|ref|YP_008873778.1|	-	2.2	5.7	37.3	53	1.1	37.3	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DivIC	PF04977.15	gi|564287558|ref|YP_008873778.1|	-	3.6	7.4	36.7	1.8	8.4	3.4	5.2	3	1	2	5	5	5	0	Septum	formation	initiator
YtxH	PF12732.7	gi|564287558|ref|YP_008873778.1|	-	4.7	7.8	11.7	2	9.0	0.8	3.8	3	2	0	3	3	3	0	YtxH-like	protein
FliD_N	PF02465.18	gi|564287558|ref|YP_008873778.1|	-	4.7	8.0	10.7	6	7.6	0.8	3.6	2	2	1	3	3	3	0	Flagellar	hook-associated	protein	2	N-terminus
NPV_P10	PF05531.12	gi|564287558|ref|YP_008873778.1|	-	4.9	7.7	20.0	1.8	9.1	1.1	4.6	3	1	1	4	4	4	0	Nucleopolyhedrovirus	P10	protein
PilJ	PF13675.6	gi|564287558|ref|YP_008873778.1|	-	5.4	7.1	16.8	5.6	7.0	1.4	3.9	3	1	1	4	4	4	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
MscS_porin	PF12795.7	gi|564287558|ref|YP_008873778.1|	-	6.3	6.3	41.2	12	5.4	16.7	3.3	2	2	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
LMBR1	PF04791.16	gi|564287558|ref|YP_008873778.1|	-	6.6	5.5	19.1	2.1	7.1	3.3	2.4	1	1	0	2	2	2	0	LMBR1-like	membrane	protein
DUF5082	PF16888.5	gi|564287558|ref|YP_008873778.1|	-	7.1	6.9	32.0	0.16	12.2	13.6	3.5	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
APG6_N	PF17675.1	gi|564287558|ref|YP_008873778.1|	-	7.6	7.1	53.9	2.6	8.6	3.1	3.9	2	2	1	3	3	3	0	Apg6	coiled-coil	region
Laminin_II	PF06009.12	gi|564287558|ref|YP_008873778.1|	-	7.7	6.5	28.2	0.72	9.9	5.6	4.5	2	2	2	4	4	4	0	Laminin	Domain	II
WXG100	PF06013.12	gi|564287558|ref|YP_008873778.1|	-	9	6.6	15.1	8.3	6.7	1.0	4.7	4	1	1	5	5	5	0	Proteins	of	100	residues	with	WXG
HTH_20	PF12840.7	gi|564287559|ref|YP_008873780.1|	-	0.00036	20.5	0.1	0.00057	19.9	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|564287559|ref|YP_008873780.1|	-	0.0039	17.1	0.0	0.0079	16.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TrmB	PF01978.19	gi|564287559|ref|YP_008873780.1|	-	0.013	15.4	0.0	0.018	14.9	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|564287559|ref|YP_008873780.1|	-	0.018	14.6	0.1	0.029	13.9	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
bPH_3	PF14470.6	gi|564287799|ref|YP_008873781.1|	-	8.1e-05	22.9	0.0	0.00016	21.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	PH	domain
VAPB_antitox	PF02697.14	gi|564287560|ref|YP_008873782.1|	-	1.3e-13	51.5	4.7	1.7e-13	51.1	4.7	1.2	1	0	0	1	1	1	1	Putative	antitoxin
EURL	PF06937.11	gi|564287560|ref|YP_008873782.1|	-	0.027	13.9	0.1	0.028	13.9	0.1	1.1	1	0	0	1	1	1	0	EURL	protein
PIN	PF01850.21	gi|564287561|ref|YP_008873783.1|	-	1e-10	42.2	0.0	1.2e-10	41.9	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
PCNA_N	PF00705.18	gi|564287563|ref|YP_008873785.1|	-	0.00079	19.1	0.0	0.0018	18.0	0.0	1.6	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
SprT-like	PF10263.9	gi|564287565|ref|YP_008873787.1|	-	0.15	11.9	0.1	0.59	10.0	0.1	1.8	2	0	0	2	2	2	0	SprT-like	family
Aminopep	PF10023.9	gi|564287565|ref|YP_008873787.1|	-	0.44	9.9	2.9	0.79	9.0	0.1	2.0	2	0	0	2	2	2	0	Putative	aminopeptidase
zf-ribbon_3	PF13248.6	gi|564287565|ref|YP_008873787.1|	-	0.59	9.6	2.4	0.64	9.5	0.7	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
PQQ_3	PF13570.6	gi|564287566|ref|YP_008873788.1|	-	1.1e-33	114.8	21.1	8.5e-08	32.5	0.2	8.1	7	1	0	7	7	7	6	PQQ-like	domain
PQQ_2	PF13360.6	gi|564287566|ref|YP_008873788.1|	-	3e-26	92.5	11.8	1.3e-19	70.7	0.9	3.5	1	1	1	2	2	2	2	PQQ-like	domain
PQQ	PF01011.21	gi|564287566|ref|YP_008873788.1|	-	3.7e-16	58.2	15.9	1.3e-05	24.9	0.0	6.4	7	1	0	7	7	7	4	PQQ	enzyme	repeat
WD40_like	PF17005.5	gi|564287566|ref|YP_008873788.1|	-	0.064	12.6	0.0	0.15	11.4	0.0	1.5	2	0	0	2	2	2	0	WD40-like	domain
Alginate_lyase	PF05426.12	gi|564287567|ref|YP_008873789.1|	-	0.11	12.0	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Alginate	lyase
NPV_P10	PF05531.12	gi|564287570|ref|YP_008873793.1|	-	0.022	15.2	0.4	0.033	14.7	0.4	1.4	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
ArsR	PF09824.9	gi|564287570|ref|YP_008873793.1|	-	0.17	11.5	0.4	0.97	9.0	0.0	1.9	1	1	1	2	2	2	0	ArsR	transcriptional	regulator
DUF2065	PF09838.9	gi|564287575|ref|YP_008873799.1|	-	0.011	15.7	0.0	1.5	8.9	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
MNSV_P7B	PF06692.11	gi|564287802|ref|YP_008873800.1|	-	0.13	12.3	0.5	0.14	12.2	0.5	1.1	1	0	0	1	1	1	0	Melon	necrotic	spot	virus	P7B	protein
HemY_N	PF07219.13	gi|564287802|ref|YP_008873800.1|	-	0.14	12.4	0.4	0.13	12.5	0.4	1.1	1	0	0	1	1	1	0	HemY	protein	N-terminus
SWIM	PF04434.17	gi|564287576|ref|YP_008873801.1|	-	0.0066	16.1	0.1	0.0066	16.1	0.1	2.4	2	1	0	2	2	2	1	SWIM	zinc	finger
TFIIB	PF00382.19	gi|564287577|ref|YP_008873802.1|	-	4e-17	62.0	2.3	4e-09	36.4	1.7	2.5	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564287577|ref|YP_008873802.1|	-	3.1e-10	39.4	3.6	3.1e-10	39.4	3.6	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|564287577|ref|YP_008873802.1|	-	0.0016	18.3	0.5	0.004	17.0	0.5	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
HTH_23	PF13384.6	gi|564287577|ref|YP_008873802.1|	-	0.0068	16.2	0.7	1.8	8.5	0.0	3.6	4	0	0	4	4	4	1	Homeodomain-like	domain
EFF-AFF	PF14884.6	gi|564287577|ref|YP_008873802.1|	-	0.01	14.0	0.0	0.015	13.5	0.0	1.1	1	0	0	1	1	1	0	Type	I	membrane	glycoproteins	cell-cell	fusogen
XRCC4	PF06632.12	gi|564287577|ref|YP_008873802.1|	-	0.019	13.8	2.3	0.027	13.3	2.3	1.1	1	0	0	1	1	1	0	DNA	double-strand	break	repair	and	V(D)J	recombination	protein	XRCC4
DZR	PF12773.7	gi|564287577|ref|YP_008873802.1|	-	0.069	13.2	1.4	0.15	12.1	1.4	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564287577|ref|YP_008873802.1|	-	0.11	12.0	3.2	0.32	10.5	3.2	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564287577|ref|YP_008873802.1|	-	0.12	12.4	1.9	0.17	11.9	0.7	1.8	2	0	0	2	2	2	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|564287577|ref|YP_008873802.1|	-	0.88	9.7	4.9	3.3	7.9	0.7	2.5	1	1	2	3	3	3	0	Zinc	ribbon	domain
HicB_lk_antitox	PF15919.5	gi|564287578|ref|YP_008873804.1|	-	0.0054	16.8	0.0	0.01	16.0	0.0	1.4	1	0	0	1	1	1	1	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
RHH_1	PF01402.21	gi|564287578|ref|YP_008873804.1|	-	0.0078	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
ParE_toxin	PF05016.15	gi|564287579|ref|YP_008873805.1|	-	6.2e-05	23.5	0.0	8.1e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	ParE	toxin	of	type	II	toxin-antitoxin	system,	parDE
Gp49	PF05973.14	gi|564287579|ref|YP_008873805.1|	-	0.059	13.5	0.0	0.073	13.2	0.0	1.1	1	0	0	1	1	1	0	Phage	derived	protein	Gp49-like	(DUF891)
CBM-like	PF14683.6	gi|564287805|ref|YP_008873809.1|	-	0.027	14.4	0.0	0.032	14.1	0.0	1.1	1	0	0	1	1	1	0	Polysaccharide	lyase	family	4,	domain	III
GPI-anchored	PF10342.9	gi|564287805|ref|YP_008873809.1|	-	0.049	14.4	0.2	0.14	12.9	0.2	1.8	1	1	0	1	1	1	0	Ser-Thr-rich	glycosyl-phosphatidyl-inositol-anchored	membrane	family
DUF1344	PF07076.11	gi|564287805|ref|YP_008873809.1|	-	0.094	12.6	0.1	0.17	11.8	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1344)
N6_Mtase	PF02384.16	gi|564287582|ref|YP_008873810.1|	-	1.3e-11	44.3	0.0	1.8e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
N6_N4_Mtase	PF01555.18	gi|564287582|ref|YP_008873810.1|	-	0.076	12.7	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	DNA	methylase
Methyltransf_25	PF13649.6	gi|564287582|ref|YP_008873810.1|	-	0.11	13.2	0.1	0.44	11.3	0.0	2.0	2	1	0	2	2	2	0	Methyltransferase	domain
DUF664	PF04978.12	gi|564287583|ref|YP_008873811.1|	-	0.11	13.0	0.2	0.12	12.7	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF664)
FANCL_C	PF11793.8	gi|564287584|ref|YP_008873812.1|	-	0.0026	17.9	0.6	0.4	10.9	0.1	2.1	1	1	1	2	2	2	2	FANCL	C-terminal	domain
Terminase_GpA	PF05876.12	gi|564287584|ref|YP_008873812.1|	-	0.0091	14.6	0.5	0.0092	14.6	0.5	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
zf-Di19	PF05605.12	gi|564287584|ref|YP_008873812.1|	-	0.0094	16.2	0.0	0.012	15.9	0.0	1.2	1	0	0	1	1	1	1	Drought	induced	19	protein	(Di19),	zinc-binding
Rubredoxin_2	PF18073.1	gi|564287584|ref|YP_008873812.1|	-	0.053	13.3	1.6	0.17	11.6	0.1	2.0	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
DiS_P_DiS	PF06750.13	gi|564287584|ref|YP_008873812.1|	-	0.13	12.4	0.1	0.7	10.0	0.0	1.8	2	0	0	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
Colicin_immun	PF09204.10	gi|564287810|ref|YP_008873819.1|	-	1.4e-10	41.6	1.1	1.8e-10	41.2	1.1	1.2	1	0	0	1	1	1	1	Bacterial	self-protective	colicin-like	immunity
DBD_HTH	PF18430.1	gi|564287810|ref|YP_008873819.1|	-	0.12	12.1	0.1	0.26	11.1	0.1	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	domain
ATP-grasp_5	PF13549.6	gi|564287810|ref|YP_008873819.1|	-	0.16	11.4	0.0	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	ATP-grasp	domain
Colicin_D	PF11429.8	gi|564287587|ref|YP_008873820.1|	-	1.7e-16	60.4	0.2	2e-16	60.2	0.2	1.1	1	0	0	1	1	1	1	Colicin	D
2C_adapt	PF08793.10	gi|564287587|ref|YP_008873820.1|	-	0.11	12.7	0.1	21	5.4	0.1	2.4	2	0	0	2	2	2	0	2-cysteine	adaptor	domain
EF-hand_6	PF13405.6	gi|564287811|ref|YP_008873821.1|	-	0.016	15.1	0.6	5.2	7.3	0.2	2.5	2	0	0	2	2	2	0	EF-hand	domain
EF-hand_7	PF13499.6	gi|564287811|ref|YP_008873821.1|	-	0.025	15.0	1.0	0.078	13.4	1.0	1.9	1	1	0	1	1	1	0	EF-hand	domain	pair
EF-hand_1	PF00036.32	gi|564287811|ref|YP_008873821.1|	-	0.15	11.7	0.3	23	4.8	0.0	2.5	2	0	0	2	2	2	0	EF	hand
DDE_3	PF13358.6	gi|564287590|ref|YP_008873824.1|	-	2.9e-32	111.5	0.0	3.5e-32	111.2	0.0	1.0	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|564287590|ref|YP_008873824.1|	-	0.00019	21.6	0.0	0.00026	21.2	0.0	1.2	1	0	0	1	1	1	1	Integrase	core	domain
HTH_33	PF13592.6	gi|574087267|ref|YP_008997847.1|	-	6.7e-18	64.1	1.5	1.1e-17	63.3	0.4	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|574087267|ref|YP_008997847.1|	-	2.9e-08	34.2	0.7	6.1e-08	33.2	0.3	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_31	PF13560.6	gi|574087267|ref|YP_008997847.1|	-	0.003	17.9	1.4	0.031	14.6	0.1	2.9	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|574087267|ref|YP_008997847.1|	-	0.015	15.1	0.0	0.038	13.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_21	PF13276.6	gi|574087267|ref|YP_008997847.1|	-	0.019	15.1	0.1	0.11	12.7	0.0	2.1	2	1	0	2	2	2	0	HTH-like	domain
HTH_29	PF13551.6	gi|574087267|ref|YP_008997847.1|	-	0.025	14.6	0.2	0.13	12.4	0.0	2.2	2	1	0	2	2	2	0	Winged	helix-turn	helix
DUF1778	PF08681.11	gi|574087267|ref|YP_008997847.1|	-	0.087	12.8	0.2	1.4	8.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1778)
DDT	PF02791.17	gi|574087267|ref|YP_008997847.1|	-	0.12	12.7	0.1	9.2	6.7	0.0	2.2	2	0	0	2	2	2	0	DDT	domain
DDE_Tnp_IS1595	PF12762.7	gi|564287591|ref|YP_008873825.1|	-	1.4e-12	47.9	0.0	1.8e-12	47.5	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
DDE_Tnp_1	PF01609.21	gi|564287592|ref|YP_008873826.1|	-	9.2e-06	25.4	0.7	1.8e-05	24.5	0.7	1.3	1	1	0	1	1	1	1	Transposase	DDE	domain
VWA	PF00092.28	gi|564287813|ref|YP_008873828.1|	-	2e-22	80.3	0.1	4e-22	79.3	0.1	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|564287813|ref|YP_008873828.1|	-	8.5e-15	55.3	0.2	4.9e-14	52.9	0.0	2.5	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Dockerin_1	PF00404.18	gi|564287813|ref|YP_008873828.1|	-	4.8e-07	29.9	0.7	4.8e-07	29.9	0.7	4.4	4	0	0	4	4	4	1	Dockerin	type	I	domain
VWA_3	PF13768.6	gi|564287813|ref|YP_008873828.1|	-	1.5e-06	28.2	0.0	3.6e-06	27.0	0.0	1.7	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DUF3883	PF13020.6	gi|564287813|ref|YP_008873828.1|	-	0.019	15.0	0.3	0.044	13.8	0.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3883)
VWA_CoxE	PF05762.14	gi|564287813|ref|YP_008873828.1|	-	0.033	13.6	0.0	0.085	12.2	0.0	1.6	1	0	0	1	1	1	0	VWA	domain	containing	CoxE-like	protein
Nop14	PF04147.12	gi|564287593|ref|YP_008873829.1|	-	2.4	6.3	5.6	2.7	6.1	5.6	1.0	1	0	0	1	1	1	0	Nop14-like	family
Phage_integrase	PF00589.22	gi|564287594|ref|YP_008873830.1|	-	4.9e-15	55.7	0.0	3.5e-14	53.0	0.0	2.1	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|564287594|ref|YP_008873830.1|	-	2.4e-05	24.6	0.0	4.4e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|564287594|ref|YP_008873830.1|	-	4.5e-05	23.7	0.3	0.00014	22.1	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF3435	PF11917.8	gi|564287594|ref|YP_008873830.1|	-	0.069	12.1	0.0	0.32	9.9	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3435)
Arg_decarbox_C	PF17944.1	gi|564287594|ref|YP_008873830.1|	-	0.091	13.3	0.0	0.35	11.5	0.0	2.0	2	0	0	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
Phage_int_SAM_4	PF13495.6	gi|564287594|ref|YP_008873830.1|	-	0.14	12.7	0.0	0.33	11.5	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
DDE_Tnp_1	PF01609.21	gi|564287595|ref|YP_008873831.1|	-	4e-10	39.7	0.3	7.1e-10	38.9	0.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|564287595|ref|YP_008873831.1|	-	3.6e-06	26.9	0.0	2e-05	24.5	0.0	2.3	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_5	PF13546.6	gi|564287595|ref|YP_008873831.1|	-	0.00029	20.3	0.3	0.00058	19.3	0.3	1.5	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
Chordopox_A13L	PF05961.11	gi|564287814|ref|YP_008873832.1|	-	0.16	12.3	0.0	0.19	12.0	0.0	1.3	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
FixQ	PF05545.11	gi|564287814|ref|YP_008873832.1|	-	3	7.9	5.5	23	5.1	5.5	2.0	1	1	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Fic	PF02661.18	gi|564287596|ref|YP_008873833.1|	-	3e-25	88.9	0.0	1.7e-24	86.5	0.0	2.2	2	0	0	2	2	2	1	Fic/DOC	family
Fic_N	PF13784.6	gi|564287596|ref|YP_008873833.1|	-	1.8e-24	85.5	0.0	4.7e-24	84.2	0.0	1.7	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
HTH_Crp_2	PF13545.6	gi|564287596|ref|YP_008873833.1|	-	0.021	14.8	0.2	0.085	12.8	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_17	PF12728.7	gi|564287596|ref|YP_008873833.1|	-	0.044	14.0	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4172	PF13776.6	gi|564287596|ref|YP_008873833.1|	-	0.049	14.0	0.0	0.14	12.5	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4172)
FtsK_gamma	PF09397.10	gi|564287596|ref|YP_008873833.1|	-	0.067	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	Ftsk	gamma	domain
DDE_Tnp_IS240	PF13610.6	gi|564287597|ref|YP_008873834.1|	-	4.7e-21	75.5	0.1	6.7e-21	75.0	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|564287597|ref|YP_008873834.1|	-	2.6e-06	27.1	2.3	6.4e-06	25.9	2.3	1.7	1	1	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.10	gi|564287597|ref|YP_008873834.1|	-	0.0056	16.7	1.6	0.12	12.4	0.0	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2384)
rve	PF00665.26	gi|564287597|ref|YP_008873834.1|	-	0.0062	16.7	0.3	0.014	15.6	0.3	1.8	1	1	0	1	1	1	1	Integrase	core	domain
DnaT	PF17948.1	gi|564287597|ref|YP_008873834.1|	-	0.041	13.6	2.7	0.099	12.4	2.7	1.6	1	0	0	1	1	1	0	DnaT	DNA-binding	domain
DUF21	PF01595.20	gi|564287599|ref|YP_008873836.1|	-	4.1e-34	117.8	0.1	7.2e-34	117.0	0.1	1.3	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|564287599|ref|YP_008873836.1|	-	4.8e-05	23.7	1.3	0.00099	19.5	0.0	2.4	2	0	0	2	2	2	1	CBS	domain
DUF3102	PF11300.8	gi|564287599|ref|YP_008873836.1|	-	0.15	12.3	0.0	0.25	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3102)
F420_ligase	PF01996.16	gi|564287600|ref|YP_008873837.1|	-	3.5e-46	157.6	1.7	4e-46	157.4	1.7	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
DUF3403	PF11883.8	gi|564287601|ref|YP_008873838.1|	-	0.29	11.3	0.1	0.29	11.3	0.1	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3403)
UCR_Fe-S_N	PF10399.9	gi|564287815|ref|YP_008873839.1|	-	7.2	6.0	7.5	44	3.5	0.0	2.6	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
HTH_20	PF12840.7	gi|564287602|ref|YP_008873840.1|	-	8.5e-14	51.4	1.1	1.4e-13	50.7	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287602|ref|YP_008873840.1|	-	5.2e-08	32.3	0.0	2.2e-07	30.3	0.0	2.0	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564287602|ref|YP_008873840.1|	-	4.8e-06	26.4	0.0	1.6e-05	24.7	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564287602|ref|YP_008873840.1|	-	8.7e-05	22.3	0.0	0.00015	21.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564287602|ref|YP_008873840.1|	-	0.00032	20.5	0.0	0.001	18.9	0.0	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DprA_WH	PF17782.1	gi|564287602|ref|YP_008873840.1|	-	0.0029	17.7	0.6	0.025	14.7	0.4	2.3	1	1	0	1	1	1	1	DprA	winged	helix	domain
FaeA	PF04703.12	gi|564287602|ref|YP_008873840.1|	-	0.0034	17.7	0.0	0.0077	16.6	0.0	1.7	1	1	0	1	1	1	1	FaeA-like	protein
HTH_11	PF08279.12	gi|564287602|ref|YP_008873840.1|	-	0.0065	16.4	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
LexA_DNA_bind	PF01726.16	gi|564287602|ref|YP_008873840.1|	-	0.0088	15.8	0.0	0.017	14.9	0.0	1.5	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|564287602|ref|YP_008873840.1|	-	0.015	15.1	0.0	0.03	14.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|564287602|ref|YP_008873840.1|	-	0.061	13.3	0.0	0.092	12.7	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
B-block_TFIIIC	PF04182.12	gi|564287602|ref|YP_008873840.1|	-	0.095	12.9	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Interferon	PF00143.19	gi|564287602|ref|YP_008873840.1|	-	0.096	12.9	0.1	0.12	12.5	0.1	1.3	1	1	0	1	1	1	0	Interferon	alpha/beta	domain
RepL	PF05732.11	gi|564287602|ref|YP_008873840.1|	-	0.11	12.0	0.0	0.21	11.0	0.0	1.5	1	1	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
HTH_27	PF13463.6	gi|564287602|ref|YP_008873840.1|	-	0.12	12.9	0.0	0.34	11.4	0.0	1.8	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|564287602|ref|YP_008873840.1|	-	0.15	12.1	0.0	0.34	10.9	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|564287602|ref|YP_008873840.1|	-	0.17	12.1	0.0	0.27	11.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF5038	PF16441.5	gi|564287816|ref|YP_008873841.1|	-	0.073	13.1	0.0	0.13	12.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5038)
Acetyltransf_1	PF00583.25	gi|564287603|ref|YP_008873842.1|	-	3.2e-17	62.9	0.0	5e-17	62.2	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564287603|ref|YP_008873842.1|	-	1.4e-10	41.2	0.0	2.1e-10	40.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564287603|ref|YP_008873842.1|	-	2e-10	40.9	0.0	3.1e-10	40.3	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|564287603|ref|YP_008873842.1|	-	1.4e-06	28.1	0.0	2e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564287603|ref|YP_008873842.1|	-	5e-05	24.0	0.0	6.6e-05	23.6	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564287603|ref|YP_008873842.1|	-	0.0001	22.2	0.0	0.00016	21.6	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|564287603|ref|YP_008873842.1|	-	0.0016	18.6	0.0	0.0022	18.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564287603|ref|YP_008873842.1|	-	0.003	17.7	0.0	0.0057	16.8	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.7	gi|564287603|ref|YP_008873842.1|	-	0.15	12.1	0.0	0.25	11.4	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
GNAT_acetyltran	PF12746.7	gi|564287603|ref|YP_008873842.1|	-	0.21	11.1	0.0	0.33	10.5	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase
MASE3	PF17159.4	gi|564287604|ref|YP_008873843.1|	-	0.035	13.7	5.3	0.049	13.3	5.3	1.2	1	1	0	1	1	1	0	Membrane-associated	sensor	domain
GPDPase_memb	PF10110.9	gi|564287817|ref|YP_008873845.1|	-	0.0007	18.5	2.0	0.00088	18.1	2.0	1.2	1	0	0	1	1	1	1	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
DUF1700	PF08006.11	gi|564287817|ref|YP_008873845.1|	-	1.5	8.3	3.9	2.3	7.7	3.9	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
PQQ_2	PF13360.6	gi|564287606|ref|YP_008873846.1|	-	3.9e-35	121.5	4.4	1.1e-16	61.2	0.2	3.2	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|564287606|ref|YP_008873846.1|	-	1.5e-28	98.5	17.5	5.1e-06	26.8	0.0	8.1	8	0	0	8	8	8	6	PQQ-like	domain
PQQ	PF01011.21	gi|564287606|ref|YP_008873846.1|	-	3.3e-13	48.9	8.0	0.045	13.7	0.0	8.2	10	0	0	10	10	10	4	PQQ	enzyme	repeat
HNH_2	PF13391.6	gi|564287607|ref|YP_008873847.1|	-	5.8e-10	39.2	0.1	1.9e-09	37.5	0.1	1.9	1	1	0	1	1	1	1	HNH	endonuclease
HTH_45	PF14947.6	gi|564287607|ref|YP_008873847.1|	-	2.4e-05	24.2	0.0	0.011	15.8	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix
HemN_C	PF06969.16	gi|564287607|ref|YP_008873847.1|	-	0.00092	19.2	0.1	1.8	8.7	0.0	2.4	2	0	0	2	2	2	2	HemN	C-terminal	domain
AAA_assoc_C	PF09821.9	gi|564287607|ref|YP_008873847.1|	-	0.0062	17.1	0.0	0.2	12.2	0.0	2.3	2	0	0	2	2	2	1	C-terminal	AAA-associated	domain
DUF4423	PF14394.6	gi|564287607|ref|YP_008873847.1|	-	0.063	13.0	0.0	0.87	9.3	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
DUF2953	PF11167.8	gi|564287607|ref|YP_008873847.1|	-	0.17	12.0	0.1	0.69	10.0	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2953)
Exonuc_VII_S	PF02609.16	gi|564287608|ref|YP_008873848.1|	-	6.7e-12	45.3	1.0	7.7e-12	45.1	1.0	1.1	1	0	0	1	1	1	1	Exonuclease	VII	small	subunit
Wbp11	PF09429.10	gi|564287608|ref|YP_008873848.1|	-	0.1	13.0	0.6	0.12	12.8	0.6	1.1	1	0	0	1	1	1	0	WW	domain	binding	protein	11
Rnk_N	PF14760.6	gi|564287608|ref|YP_008873848.1|	-	0.22	12.0	4.1	1.6	9.2	4.1	2.1	1	1	0	1	1	1	0	Rnk	N-terminus
Exonuc_VII_L	PF02601.15	gi|564287609|ref|YP_008873849.1|	-	4.8e-53	180.7	0.4	6.6e-53	180.3	0.4	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
tRNA_anti_2	PF13742.6	gi|564287609|ref|YP_008873849.1|	-	1.2e-15	57.5	0.2	2.3e-15	56.6	0.2	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
SNARE	PF05739.19	gi|564287609|ref|YP_008873849.1|	-	0.015	15.3	0.1	0.049	13.6	0.1	1.9	1	0	0	1	1	1	0	SNARE	domain
DUF4407	PF14362.6	gi|564287609|ref|YP_008873849.1|	-	0.016	14.6	1.8	0.026	13.9	1.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
tRNA_anti-codon	PF01336.25	gi|564287609|ref|YP_008873849.1|	-	0.034	14.1	0.2	0.059	13.4	0.2	1.4	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
SSB	PF00436.25	gi|564287609|ref|YP_008873849.1|	-	0.041	13.9	0.1	0.11	12.5	0.1	1.7	1	0	0	1	1	1	0	Single-strand	binding	protein	family
Pex24p	PF06398.11	gi|564287609|ref|YP_008873849.1|	-	0.094	11.7	0.0	0.12	11.4	0.0	1.1	1	0	0	1	1	1	0	Integral	peroxisomal	membrane	peroxin
DUF2721	PF11026.8	gi|564287609|ref|YP_008873849.1|	-	0.19	11.6	2.8	0.33	10.9	1.7	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
KfrA_N	PF11740.8	gi|564287609|ref|YP_008873849.1|	-	0.74	10.5	5.4	0.68	10.6	3.4	2.0	2	0	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
DUF4164	PF13747.6	gi|564287609|ref|YP_008873849.1|	-	0.77	10.1	10.6	10	6.5	0.1	3.0	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
DUF5345	PF17280.2	gi|564287609|ref|YP_008873849.1|	-	9.1	6.3	6.0	89	3.2	6.0	2.4	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5345)
AAA_31	PF13614.6	gi|564287610|ref|YP_008873850.1|	-	1.9e-23	83.3	0.0	2.8e-23	82.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287610|ref|YP_008873850.1|	-	2.3e-11	43.9	0.0	3.4e-11	43.3	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|564287610|ref|YP_008873850.1|	-	4.9e-06	25.9	0.0	9.2e-06	25.1	0.0	1.4	1	1	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|564287610|ref|YP_008873850.1|	-	1.7e-05	24.3	0.1	0.0087	15.4	0.0	2.2	1	1	0	2	2	2	2	ATPase	MipZ
ParA	PF10609.9	gi|564287610|ref|YP_008873850.1|	-	4e-05	23.2	0.1	0.00012	21.6	0.1	1.8	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|564287610|ref|YP_008873850.1|	-	0.0012	18.3	0.0	0.0022	17.5	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CBP_BcsQ	PF06564.12	gi|564287610|ref|YP_008873850.1|	-	0.002	17.6	0.0	0.0033	17.0	0.0	1.2	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
SRP54	PF00448.22	gi|564287610|ref|YP_008873850.1|	-	0.012	15.2	0.0	0.04	13.6	0.0	1.8	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
Phosphodiest	PF01663.22	gi|564287610|ref|YP_008873850.1|	-	0.06	12.9	0.1	0.13	11.8	0.1	1.5	2	0	0	2	2	2	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF5336	PF17270.2	gi|564287818|ref|YP_008873851.1|	-	0.092	12.4	0.9	0.21	11.2	0.9	1.7	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5336)
DUF2070	PF09843.9	gi|564287818|ref|YP_008873851.1|	-	0.34	9.1	1.1	0.45	8.7	1.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
ABC_tran	PF00005.27	gi|564287611|ref|YP_008873853.1|	-	2.1e-37	128.7	0.0	3.4e-37	128.0	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|564287611|ref|YP_008873853.1|	-	1.1e-30	107.2	0.3	1.4e-30	106.9	0.3	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|564287611|ref|YP_008873853.1|	-	0.00034	20.1	0.1	0.018	14.5	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|564287611|ref|YP_008873853.1|	-	0.0008	19.4	0.0	0.0017	18.3	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|564287611|ref|YP_008873853.1|	-	0.0037	17.5	0.3	0.025	14.8	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564287611|ref|YP_008873853.1|	-	0.0096	16.3	0.0	0.088	13.2	0.0	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|564287611|ref|YP_008873853.1|	-	0.013	15.9	1.3	0.045	14.1	1.3	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287611|ref|YP_008873853.1|	-	0.019	14.7	0.1	0.048	13.4	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.6	gi|564287611|ref|YP_008873853.1|	-	0.02	15.5	0.1	0.069	13.7	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|564287611|ref|YP_008873853.1|	-	0.024	15.1	0.0	0.039	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|564287611|ref|YP_008873853.1|	-	0.033	14.2	0.4	0.14	12.1	0.3	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_21	PF13304.6	gi|564287611|ref|YP_008873853.1|	-	0.037	13.8	0.0	0.13	12.0	0.0	1.8	1	1	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Cytidylate_kin	PF02224.18	gi|564287611|ref|YP_008873853.1|	-	0.055	13.2	0.0	0.089	12.5	0.0	1.3	1	0	0	1	1	1	0	Cytidylate	kinase
IstB_IS21	PF01695.17	gi|564287611|ref|YP_008873853.1|	-	0.067	12.9	0.0	0.39	10.4	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF87	PF01935.17	gi|564287611|ref|YP_008873853.1|	-	0.079	13.0	0.0	0.16	12.0	0.0	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
Zeta_toxin	PF06414.12	gi|564287611|ref|YP_008873853.1|	-	0.084	12.1	0.0	0.21	10.9	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
TsaE	PF02367.17	gi|564287611|ref|YP_008873853.1|	-	0.1	12.6	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Bax1-I	PF01027.20	gi|564287611|ref|YP_008873853.1|	-	0.11	12.3	0.1	0.11	12.3	0.1	2.4	3	0	0	3	3	3	0	Inhibitor	of	apoptosis-promoting	Bax1
MMR_HSR1	PF01926.23	gi|564287611|ref|YP_008873853.1|	-	0.12	12.5	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_7	PF12775.7	gi|564287611|ref|YP_008873853.1|	-	0.13	11.7	0.0	0.32	10.5	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_30	PF13604.6	gi|564287611|ref|YP_008873853.1|	-	0.14	11.8	2.5	1	9.1	2.5	2.1	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|564287611|ref|YP_008873853.1|	-	0.17	11.7	0.5	9.2	6.1	0.0	2.4	1	1	1	2	2	2	0	NTPase
DEAD	PF00270.29	gi|564287611|ref|YP_008873853.1|	-	0.2	11.4	0.1	22	4.8	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_25	PF13481.6	gi|564287611|ref|YP_008873853.1|	-	0.71	9.4	4.6	0.57	9.7	0.3	2.7	2	2	1	3	3	3	0	AAA	domain
IucA_IucC	PF04183.12	gi|564287612|ref|YP_008873854.1|	-	2.3e-68	230.3	0.0	3.4e-68	229.8	0.0	1.3	1	0	0	1	1	1	1	IucA	/	IucC	family
FhuF	PF06276.12	gi|564287612|ref|YP_008873854.1|	-	3.4e-34	118.6	0.1	8.7e-34	117.3	0.1	1.8	1	0	0	1	1	1	1	Ferric	iron	reductase	FhuF-like	transporter
Gln-synt_C	PF00120.24	gi|564287613|ref|YP_008873855.1|	-	2.4e-90	303.0	0.0	2.9e-90	302.8	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N_2	PF16952.5	gi|564287613|ref|YP_008873855.1|	-	1.9e-13	50.2	0.0	4.3e-13	49.0	0.0	1.7	1	0	0	1	1	1	1	Glutamine	synthetase	N-terminal	domain
Gln-synt_N	PF03951.19	gi|564287613|ref|YP_008873855.1|	-	0.085	12.6	0.0	0.88	9.3	0.0	2.4	2	0	0	2	2	2	0	Glutamine	synthetase,	beta-Grasp	domain
Aminotran_3	PF00202.21	gi|564287614|ref|YP_008873856.1|	-	5.4e-96	321.7	0.0	6.3e-96	321.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
IucA_IucC	PF04183.12	gi|564287615|ref|YP_008873857.1|	-	4e-58	196.8	0.1	7e-58	196.0	0.1	1.4	1	0	0	1	1	1	1	IucA	/	IucC	family
FhuF	PF06276.12	gi|564287615|ref|YP_008873857.1|	-	8.1e-32	110.9	0.0	1.4e-31	110.1	0.0	1.4	1	0	0	1	1	1	1	Ferric	iron	reductase	FhuF-like	transporter
Peripla_BP_2	PF01497.18	gi|564287616|ref|YP_008873858.1|	-	3e-19	69.5	0.1	7.5e-19	68.2	0.1	1.8	1	1	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|564287616|ref|YP_008873858.1|	-	2.1e-05	24.2	0.4	3.3e-05	23.5	0.4	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pyr_redox_2	PF07992.14	gi|564287617|ref|YP_008873859.1|	-	1.1e-06	28.1	4.1	0.0069	15.6	0.5	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|564287617|ref|YP_008873859.1|	-	0.00014	20.7	0.1	0.71	8.5	0.1	3.0	3	0	0	3	3	3	2	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|564287617|ref|YP_008873859.1|	-	0.00018	20.9	0.3	0.05	12.8	0.1	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|564287617|ref|YP_008873859.1|	-	0.00045	20.4	0.2	0.0014	18.8	0.2	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|564287617|ref|YP_008873859.1|	-	0.0014	18.0	6.1	0.0047	16.2	1.9	2.3	1	1	1	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|564287617|ref|YP_008873859.1|	-	0.0016	17.9	0.9	0.0037	16.7	0.9	1.6	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564287617|ref|YP_008873859.1|	-	0.087	12.0	1.1	0.18	11.0	0.4	1.8	2	0	0	2	2	2	0	Thi4	family
GIDA	PF01134.22	gi|564287617|ref|YP_008873859.1|	-	0.11	11.5	0.3	0.2	10.7	0.2	1.4	1	1	0	1	1	1	0	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|564287617|ref|YP_008873859.1|	-	0.17	11.0	8.9	0.033	13.3	4.2	2.1	2	1	0	2	2	2	0	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|564287617|ref|YP_008873859.1|	-	0.32	11.0	0.1	0.32	11.0	0.1	2.8	3	1	0	3	3	3	0	FAD-NAD(P)-binding
DAO	PF01266.24	gi|564287617|ref|YP_008873859.1|	-	1.6	8.2	11.1	0.3	10.6	4.5	2.4	1	1	1	2	2	2	0	FAD	dependent	oxidoreductase
zf-TFIIB	PF13453.6	gi|564287619|ref|YP_008873862.1|	-	0.0054	16.0	2.9	0.0054	16.0	2.9	1.9	2	0	0	2	2	2	1	Transcription	factor	zinc-finger
DDE_3	PF13358.6	gi|564287619|ref|YP_008873862.1|	-	0.059	13.1	0.1	0.21	11.3	0.2	1.8	2	0	0	2	2	2	0	DDE	superfamily	endonuclease
DUF1660	PF07874.11	gi|564287619|ref|YP_008873862.1|	-	0.23	12.0	3.0	2.6	8.6	0.4	3.0	2	1	0	2	2	2	0	Prophage	protein	(DUF1660)
DUF2367	PF10164.9	gi|564287619|ref|YP_008873862.1|	-	0.34	11.4	1.2	0.6	10.6	0.2	2.0	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2367)
zinc_ribbon_9	PF14369.6	gi|564287619|ref|YP_008873862.1|	-	0.46	10.8	4.6	5.7	7.3	4.4	2.7	1	1	1	2	2	2	0	zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|564287619|ref|YP_008873862.1|	-	1.2	9.1	4.7	24	5.0	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|564287619|ref|YP_008873862.1|	-	1.4	8.6	7.6	0.73	9.5	0.2	3.1	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
TF_Zn_Ribbon	PF08271.12	gi|564287621|ref|YP_008873864.1|	-	0.0027	17.2	0.9	0.0088	15.5	0.9	1.9	1	0	0	1	1	1	1	TFIIB	zinc-binding
PhnA_Zn_Ribbon	PF08274.12	gi|564287621|ref|YP_008873864.1|	-	0.0036	17.2	0.7	0.0063	16.5	0.7	1.4	1	0	0	1	1	1	1	PhnA	Zinc-Ribbon
DUF2387	PF09526.10	gi|564287621|ref|YP_008873864.1|	-	0.018	15.2	0.3	0.018	15.2	0.3	2.0	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.7	gi|564287621|ref|YP_008873864.1|	-	0.044	13.8	0.3	0.075	13.0	0.3	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.9	gi|564287621|ref|YP_008873864.1|	-	0.086	12.9	0.6	9.9	6.3	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-TFIIB	PF13453.6	gi|564287621|ref|YP_008873864.1|	-	0.14	11.5	1.4	0.26	10.6	1.4	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zf-Sec23_Sec24	PF04810.15	gi|564287621|ref|YP_008873864.1|	-	0.18	11.9	0.1	0.3	11.2	0.1	1.3	1	0	0	1	1	1	0	Sec23/Sec24	zinc	finger
zf-NADH-PPase	PF09297.11	gi|564287621|ref|YP_008873864.1|	-	0.46	10.2	2.1	4	7.2	0.0	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
MreB_Mbl	PF06723.13	gi|564287622|ref|YP_008873865.1|	-	1.2e-06	27.6	0.0	0.0048	15.8	0.0	2.2	2	0	0	2	2	2	2	MreB/Mbl	protein
FtsA	PF14450.6	gi|564287622|ref|YP_008873865.1|	-	0.012	16.0	0.0	0.031	14.7	0.0	1.7	2	0	0	2	2	2	0	Cell	division	protein	FtsA
Glyco_transf_52	PF07922.11	gi|564287622|ref|YP_008873865.1|	-	0.17	11.1	0.1	0.27	10.5	0.1	1.2	1	0	0	1	1	1	0	Glycosyltransferase	family	52
Fig1	PF12351.8	gi|564287623|ref|YP_008873866.1|	-	0.85	9.5	3.9	0.61	10.0	2.0	1.6	1	1	1	2	2	2	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
Yip1	PF04893.17	gi|564287623|ref|YP_008873866.1|	-	6.5	6.4	17.9	22	4.7	17.9	1.7	1	1	0	1	1	1	0	Yip1	domain
VirB7	PF17413.2	gi|564287821|ref|YP_008873867.1|	-	0.15	11.4	0.1	0.25	10.7	0.1	1.3	1	0	0	1	1	1	0	Outer	membrane	lipoprotein	virB7
DoxX_3	PF13781.6	gi|564287624|ref|YP_008873868.1|	-	3.3e-05	24.5	3.8	3.3e-05	24.5	3.8	2.1	2	1	1	3	3	3	1	DoxX-like	family
DoxX	PF07681.12	gi|564287624|ref|YP_008873868.1|	-	0.12	12.9	9.3	0.26	11.9	9.2	1.6	1	1	0	1	1	1	0	DoxX
DUF4267	PF14087.6	gi|564287624|ref|YP_008873868.1|	-	0.82	9.8	5.7	1.2	9.2	5.7	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4267)
Peptidase_A24	PF01478.18	gi|564287624|ref|YP_008873868.1|	-	2.1	8.8	7.6	24	5.4	7.6	2.1	1	1	0	1	1	1	0	Type	IV	leader	peptidase	family
VIT1	PF01988.19	gi|564287625|ref|YP_008873869.1|	-	1.2e-09	38.3	2.6	1.2e-09	38.3	2.6	2.0	1	1	1	2	2	2	1	VIT	family
ATP-synt_J	PF04911.12	gi|564287625|ref|YP_008873869.1|	-	0.3	10.7	0.4	0.73	9.5	0.4	1.6	1	0	0	1	1	1	0	ATP	synthase	j	chain
GPHR_N	PF12537.8	gi|564287625|ref|YP_008873869.1|	-	5.1	7.2	7.8	1.3e+02	2.8	7.8	2.8	1	1	0	1	1	1	0	The	Golgi	pH	Regulator	(GPHR)	Family	N-terminal
DUF211	PF02680.14	gi|564287626|ref|YP_008873870.1|	-	1.2e-34	118.3	0.3	1.4e-34	118.1	0.3	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
HMA	PF00403.26	gi|564287626|ref|YP_008873870.1|	-	0.034	14.6	0.1	0.073	13.5	0.1	1.6	1	0	0	1	1	1	0	Heavy-metal-associated	domain
Usp	PF00582.26	gi|564287627|ref|YP_008873871.1|	-	2.8e-61	206.1	8.5	3.7e-30	105.3	1.7	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
CHB_HEX_C_1	PF13290.6	gi|564287627|ref|YP_008873871.1|	-	0.078	13.0	0.2	0.15	12.1	0.2	1.5	1	0	0	1	1	1	0	Chitobiase/beta-hexosaminidase	C-terminal	domain
FAM25	PF15825.5	gi|564287627|ref|YP_008873871.1|	-	1.4	9.3	7.6	6.3	7.2	0.2	3.3	3	0	0	3	3	3	0	FAM25	family
HTH_32	PF13565.6	gi|564287628|ref|YP_008873872.1|	-	0.046	14.3	1.6	0.48	11.1	0.0	2.6	2	1	0	2	2	2	0	Homeodomain-like	domain
TMEM119	PF15724.5	gi|564287628|ref|YP_008873872.1|	-	0.076	13.1	0.0	0.16	12.0	0.0	1.5	1	0	0	1	1	1	0	TMEM119	family
DUF2757	PF10955.8	gi|564287628|ref|YP_008873872.1|	-	0.099	12.9	0.1	0.19	12.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2757)
PyrI_C	PF02748.15	gi|564287630|ref|YP_008873874.1|	-	0.0034	17.2	0.2	0.014	15.3	0.0	1.9	2	0	0	2	2	2	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-ribbon_3	PF13248.6	gi|564287630|ref|YP_008873874.1|	-	0.0099	15.3	0.0	0.016	14.6	0.0	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-FCS	PF06467.14	gi|564287630|ref|YP_008873874.1|	-	0.017	15.1	1.7	0.036	14.0	1.7	1.6	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.10	gi|564287630|ref|YP_008873874.1|	-	0.051	13.9	0.3	0.051	13.9	0.3	1.7	2	0	0	2	2	2	0	Archaeal	TRASH	domain
zf-C6H2	PF15801.5	gi|564287630|ref|YP_008873874.1|	-	0.051	13.9	1.0	0.078	13.3	0.1	1.7	2	0	0	2	2	2	0	zf-MYND-like	zinc	finger,	mRNA-binding
Pyr_redox_2	PF07992.14	gi|564287631|ref|YP_008873876.1|	-	2.7e-66	223.8	1.8	2.7e-66	223.8	1.8	1.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|564287631|ref|YP_008873876.1|	-	6.1e-37	126.3	1.8	1.4e-36	125.1	1.8	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|564287631|ref|YP_008873876.1|	-	1.3e-20	73.8	4.6	1.3e-16	60.9	0.0	3.4	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564287631|ref|YP_008873876.1|	-	8.6e-10	38.3	1.6	0.00034	20.0	0.0	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564287631|ref|YP_008873876.1|	-	8.3e-09	35.0	5.0	6.4e-07	28.8	2.6	2.7	2	1	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|564287631|ref|YP_008873876.1|	-	2.6e-08	33.4	12.1	4.3e-07	29.4	2.8	4.1	2	1	2	4	4	4	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564287631|ref|YP_008873876.1|	-	3.2e-08	33.7	4.7	0.00014	22.0	1.2	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|564287631|ref|YP_008873876.1|	-	1.9e-07	30.8	1.3	1.9e-07	30.8	1.3	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564287631|ref|YP_008873876.1|	-	2.4e-07	29.8	5.6	5.6e-05	22.0	0.8	3.6	3	1	1	4	4	4	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|564287631|ref|YP_008873876.1|	-	4.2e-07	29.5	8.9	0.00092	18.6	1.0	3.2	2	1	1	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|564287631|ref|YP_008873876.1|	-	2.6e-06	27.2	10.0	0.0099	15.5	1.4	4.1	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|564287631|ref|YP_008873876.1|	-	2.9e-05	23.7	1.0	0.0041	16.7	0.0	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|564287631|ref|YP_008873876.1|	-	7.8e-05	22.1	11.0	0.012	14.9	0.1	2.9	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|564287631|ref|YP_008873876.1|	-	0.00012	21.3	2.9	0.034	13.2	0.6	3.3	3	1	0	3	3	3	1	Lycopene	cyclase	protein
XdhC_C	PF13478.6	gi|564287631|ref|YP_008873876.1|	-	0.00073	20.0	0.3	0.077	13.5	0.1	2.7	2	1	0	2	2	2	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.18	gi|564287631|ref|YP_008873876.1|	-	0.0012	18.8	5.4	0.015	15.2	0.0	2.8	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Thi4	PF01946.17	gi|564287631|ref|YP_008873876.1|	-	0.0012	18.1	2.6	0.025	13.8	0.3	2.3	2	0	0	2	2	2	1	Thi4	family
ATPgrasp_N	PF18130.1	gi|564287631|ref|YP_008873876.1|	-	0.0055	17.2	0.9	0.64	10.6	0.1	3.2	3	0	0	3	3	2	1	ATP-grasp	N-terminal	domain
TrkA_N	PF02254.18	gi|564287631|ref|YP_008873876.1|	-	0.013	15.8	2.0	0.033	14.5	0.1	2.4	2	0	0	2	2	2	0	TrkA-N	domain
Trp_halogenase	PF04820.14	gi|564287631|ref|YP_008873876.1|	-	0.022	13.6	1.4	0.095	11.5	0.3	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
2-Hacid_dh_C	PF02826.19	gi|564287631|ref|YP_008873876.1|	-	0.028	13.8	0.2	0.68	9.3	0.0	2.5	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AIRS	PF00586.24	gi|564287631|ref|YP_008873876.1|	-	0.088	13.5	0.3	0.83	10.4	0.0	2.7	2	0	0	2	2	2	0	AIR	synthase	related	protein,	N-terminal	domain
NAD_binding_9	PF13454.6	gi|564287631|ref|YP_008873876.1|	-	0.42	10.6	4.7	2.1	8.4	0.1	3.4	3	1	1	4	4	4	0	FAD-NAD(P)-binding
2-oxoacid_dh	PF00198.23	gi|564287632|ref|YP_008873877.1|	-	1.8e-87	292.6	0.0	2.8e-87	292.0	0.0	1.3	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.22	gi|564287632|ref|YP_008873877.1|	-	3.6e-23	81.2	0.7	7.3e-23	80.2	0.7	1.6	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.17	gi|564287632|ref|YP_008873877.1|	-	5.2e-13	49.1	1.1	3.8e-09	36.7	0.5	2.7	2	0	0	2	2	2	2	e3	binding	domain
GCV_H	PF01597.19	gi|564287632|ref|YP_008873877.1|	-	0.00017	21.5	0.1	0.00056	19.8	0.1	1.9	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl_2	PF13533.6	gi|564287632|ref|YP_008873877.1|	-	0.004	16.9	0.6	0.004	16.9	0.6	3.5	3	1	1	4	4	4	1	Biotin-lipoyl	like
HlyD_3	PF13437.6	gi|564287632|ref|YP_008873877.1|	-	0.0055	17.4	4.4	0.071	13.8	0.4	3.3	2	1	1	3	3	3	1	HlyD	family	secretion	protein
Paramyxo_ncap	PF00973.19	gi|564287632|ref|YP_008873877.1|	-	9.5	5.0	8.1	15	4.3	8.1	1.3	1	0	0	1	1	1	0	Paramyxovirus	nucleocapsid	protein
Transket_pyr	PF02779.24	gi|564287633|ref|YP_008873878.1|	-	1.2e-48	165.2	0.0	1.8e-48	164.6	0.0	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|564287633|ref|YP_008873878.1|	-	3e-34	117.6	0.0	6.2e-34	116.6	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
E1_dh	PF00676.20	gi|564287634|ref|YP_008873879.1|	-	1.5e-77	260.5	0.0	1.8e-77	260.2	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|564287634|ref|YP_008873879.1|	-	2.8e-06	26.7	0.0	5.1e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.21	gi|564287634|ref|YP_008873879.1|	-	0.0013	18.6	0.3	0.0078	16.0	0.3	2.1	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Transketolase_N	PF00456.21	gi|564287634|ref|YP_008873879.1|	-	0.0051	15.8	0.0	0.013	14.5	0.0	1.5	1	1	1	2	2	2	1	Transketolase,	thiamine	diphosphate	binding	domain
CAF1-p150_N	PF15557.6	gi|564287634|ref|YP_008873879.1|	-	0.062	13.2	0.4	0.096	12.6	0.4	1.2	1	0	0	1	1	1	0	CAF1	complex	subunit	p150,	region	binding	to	PCNA
ABC_tran	PF00005.27	gi|564287635|ref|YP_008873880.1|	-	1.7e-28	99.9	0.0	2.5e-28	99.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287635|ref|YP_008873880.1|	-	5.1e-12	46.2	0.2	2.4e-05	24.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287635|ref|YP_008873880.1|	-	0.00016	21.2	1.5	0.0036	16.8	0.2	2.3	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564287635|ref|YP_008873880.1|	-	0.0017	18.1	0.1	0.0044	16.7	0.1	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564287635|ref|YP_008873880.1|	-	0.0022	18.6	0.2	0.0049	17.4	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|564287635|ref|YP_008873880.1|	-	0.0076	15.9	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564287635|ref|YP_008873880.1|	-	0.0084	16.4	0.4	0.044	14.1	0.4	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564287635|ref|YP_008873880.1|	-	0.013	15.2	0.2	0.021	14.6	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564287635|ref|YP_008873880.1|	-	0.014	15.1	0.0	0.19	11.4	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_10	PF12846.7	gi|564287635|ref|YP_008873880.1|	-	0.017	14.1	0.0	0.036	13.0	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|564287635|ref|YP_008873880.1|	-	0.029	14.7	0.1	0.048	14.1	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564287635|ref|YP_008873880.1|	-	0.067	13.3	0.1	0.12	12.5	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564287635|ref|YP_008873880.1|	-	0.12	12.9	0.2	0.72	10.4	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.6	gi|564287635|ref|YP_008873880.1|	-	0.13	12.7	0.7	2.1	8.8	0.1	2.3	1	1	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|564287635|ref|YP_008873880.1|	-	0.15	11.3	0.3	0.22	10.7	0.3	1.2	1	0	0	1	1	1	0	NB-ARC	domain
Spore_IV_A	PF09547.10	gi|564287635|ref|YP_008873880.1|	-	0.15	10.9	0.1	0.22	10.4	0.1	1.1	1	0	0	1	1	1	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
SbcCD_C	PF13558.6	gi|564287635|ref|YP_008873880.1|	-	0.45	10.8	3.2	6.5	7.1	3.3	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ABC_tran	PF00005.27	gi|564287823|ref|YP_008873881.1|	-	3.8e-30	105.2	0.0	5.6e-30	104.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287823|ref|YP_008873881.1|	-	9e-12	45.4	0.8	3.6e-05	23.7	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|564287823|ref|YP_008873881.1|	-	9.3e-07	28.6	0.0	1.7e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_29	PF13555.6	gi|564287823|ref|YP_008873881.1|	-	1.3e-05	24.8	0.1	3.2e-05	23.6	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|564287823|ref|YP_008873881.1|	-	4.9e-05	22.9	0.6	0.0031	17.0	0.6	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|564287823|ref|YP_008873881.1|	-	0.00034	21.2	2.2	0.00057	20.4	1.9	1.7	1	1	0	1	1	1	1	AAA	domain
MukB	PF04310.12	gi|564287823|ref|YP_008873881.1|	-	0.0038	17.1	0.1	0.0089	15.9	0.1	1.6	1	1	0	1	1	1	1	MukB	N-terminal
AAA_27	PF13514.6	gi|564287823|ref|YP_008873881.1|	-	0.091	12.3	0.1	0.2	11.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564287823|ref|YP_008873881.1|	-	0.1	12.5	0.1	0.26	11.2	0.1	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA_15	PF13175.6	gi|564287823|ref|YP_008873881.1|	-	0.12	12.0	0.1	0.26	11.0	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
BPD_transp_2	PF02653.16	gi|564287636|ref|YP_008873882.1|	-	1e-38	133.1	30.7	1e-38	133.1	30.7	2.1	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|564287637|ref|YP_008873883.1|	-	1.9e-33	115.8	54.5	1.9e-33	115.8	54.5	2.3	2	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Aminotran_1_2	PF00155.21	gi|564287638|ref|YP_008873884.1|	-	2.5e-60	204.6	0.0	2.8e-60	204.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|564287638|ref|YP_008873884.1|	-	1.7e-12	47.3	0.0	2.7e-12	46.7	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|564287638|ref|YP_008873884.1|	-	2.6e-06	26.6	0.0	3.9e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|564287638|ref|YP_008873884.1|	-	1.5e-05	23.7	0.0	2.2e-05	23.2	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|564287638|ref|YP_008873884.1|	-	3.7e-05	23.2	0.0	6.3e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Peripla_BP_6	PF13458.6	gi|564287639|ref|YP_008873885.1|	-	6e-34	118.2	1.2	9.1e-34	117.6	1.2	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|564287639|ref|YP_008873885.1|	-	4.1e-19	68.9	0.0	1.5e-18	67.0	0.0	1.7	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.9	gi|564287639|ref|YP_008873885.1|	-	0.0063	16.3	1.6	0.0063	16.3	1.6	2.0	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TPP_enzyme_M	PF00205.22	gi|564287640|ref|YP_008873886.1|	-	1.1e-37	128.8	0.8	2.3e-37	127.8	0.1	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_N	PF02776.18	gi|564287640|ref|YP_008873886.1|	-	6.6e-33	113.7	2.6	3.9e-32	111.2	0.0	2.7	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|564287640|ref|YP_008873886.1|	-	7.2e-33	113.5	2.0	1.6e-32	112.4	2.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Epimerase	PF01370.21	gi|564287641|ref|YP_008873887.1|	-	1.6e-41	142.4	0.6	2e-41	142.0	0.6	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564287641|ref|YP_008873887.1|	-	5.5e-37	127.9	0.1	1.5e-36	126.5	0.1	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|564287641|ref|YP_008873887.1|	-	3.2e-19	69.0	0.0	4.5e-19	68.5	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|564287641|ref|YP_008873887.1|	-	1.1e-12	47.7	1.1	1.4e-12	47.4	1.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|564287641|ref|YP_008873887.1|	-	2e-10	40.8	1.3	2.3e-10	40.7	0.2	1.6	2	0	0	2	2	2	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|564287641|ref|YP_008873887.1|	-	3.2e-09	36.3	0.9	2.3e-06	27.0	0.9	2.3	1	1	0	1	1	1	1	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|564287641|ref|YP_008873887.1|	-	6.5e-09	35.3	0.0	4.3e-08	32.6	0.0	2.0	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|564287641|ref|YP_008873887.1|	-	1.2e-06	28.2	0.3	2e-06	27.4	0.3	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564287641|ref|YP_008873887.1|	-	9.1e-06	25.7	0.5	2.6e-05	24.2	0.5	1.8	1	1	0	1	1	1	1	KR	domain
NmrA	PF05368.13	gi|564287641|ref|YP_008873887.1|	-	0.00031	20.4	0.2	0.00057	19.5	0.2	1.5	1	0	0	1	1	1	1	NmrA-like	family
Peptidase_M24	PF00557.24	gi|564287642|ref|YP_008873888.1|	-	1.3e-26	93.6	0.0	1.8e-26	93.1	0.0	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|564287642|ref|YP_008873888.1|	-	8e-05	23.3	0.0	0.00017	22.2	0.0	1.6	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
RCC1_2	PF13540.6	gi|564287642|ref|YP_008873888.1|	-	0.047	13.5	0.4	0.099	12.5	0.4	1.5	1	0	0	1	1	1	0	Regulator	of	chromosome	condensation	(RCC1)	repeat
Bac_luciferase	PF00296.20	gi|564287643|ref|YP_008873889.1|	-	3.2e-52	177.9	0.2	3.8e-52	177.7	0.2	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
4HBT	PF03061.22	gi|564287644|ref|YP_008873890.1|	-	7.3e-16	58.3	0.6	1.1e-15	57.8	0.6	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|564287644|ref|YP_008873890.1|	-	1.8e-07	31.3	0.0	2.5e-07	30.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|564287644|ref|YP_008873890.1|	-	0.015	15.5	0.1	0.02	15.2	0.1	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
PS-DH	PF14765.6	gi|564287644|ref|YP_008873890.1|	-	0.029	13.6	0.1	0.029	13.6	0.1	1.2	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
AMP-binding	PF00501.28	gi|564287645|ref|YP_008873891.1|	-	3.5e-75	253.2	0.0	5.3e-75	252.6	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564287645|ref|YP_008873891.1|	-	6.3e-21	75.1	0.2	1.5e-20	73.9	0.2	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|564287645|ref|YP_008873891.1|	-	2.9e-10	39.9	0.1	2.9e-10	39.9	0.1	3.8	5	0	0	5	5	5	1	Acetyl-coenzyme	A	synthetase	N-terminus
F420_oxidored	PF03807.17	gi|564287646|ref|YP_008873892.1|	-	3.8e-18	65.9	0.5	1e-17	64.5	0.1	1.8	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.6	gi|564287646|ref|YP_008873892.1|	-	0.0014	18.6	1.0	0.0023	17.8	1.0	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_Gly3P_dh_N	PF01210.23	gi|564287646|ref|YP_008873892.1|	-	0.0015	18.5	0.0	0.0021	18.1	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Semialdhyde_dh	PF01118.24	gi|564287646|ref|YP_008873892.1|	-	0.0028	18.1	0.4	0.011	16.2	0.1	1.8	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
KR	PF08659.10	gi|564287646|ref|YP_008873892.1|	-	0.0084	16.0	0.3	0.017	15.0	0.3	1.4	1	0	0	1	1	1	1	KR	domain
NmrA	PF05368.13	gi|564287646|ref|YP_008873892.1|	-	0.016	14.7	0.1	0.026	14.1	0.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
PDH	PF02153.17	gi|564287646|ref|YP_008873892.1|	-	0.018	14.0	0.0	0.03	13.3	0.0	1.3	1	0	0	1	1	1	0	Prephenate	dehydrogenase
3HCDH_N	PF02737.18	gi|564287646|ref|YP_008873892.1|	-	0.095	12.6	0.3	0.31	10.9	0.2	1.9	1	1	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|564287646|ref|YP_008873892.1|	-	0.13	12.4	0.1	0.24	11.6	0.1	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Aldedh	PF00171.22	gi|564287647|ref|YP_008873893.1|	-	8.8e-138	459.7	0.0	9.9e-138	459.5	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
EthD	PF07110.11	gi|564287648|ref|YP_008873894.1|	-	3e-24	86.0	6.4	5e-11	43.6	0.6	3.5	2	2	0	2	2	2	2	EthD	domain
MmlI	PF09448.10	gi|564287648|ref|YP_008873894.1|	-	1.3e-23	83.6	1.2	1.4e-11	44.9	0.0	3.9	2	2	0	2	2	2	2	Methylmuconolactone	methyl-isomerase
ABM	PF03992.16	gi|564287648|ref|YP_008873894.1|	-	0.0084	16.2	0.0	5.2	7.2	0.0	3.0	2	2	0	2	2	2	2	Antibiotic	biosynthesis	monooxygenase
HD	PF01966.22	gi|564287649|ref|YP_008873895.1|	-	3.6e-10	40.1	0.1	4.9e-10	39.7	0.1	1.1	1	0	0	1	1	1	1	HD	domain
Glu_dehyd_C	PF16912.5	gi|564287650|ref|YP_008873896.1|	-	4.1e-89	297.6	0.0	5.1e-89	297.3	0.0	1.1	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|564287650|ref|YP_008873896.1|	-	6e-11	42.2	0.0	9.4e-11	41.6	0.0	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564287650|ref|YP_008873896.1|	-	1.1e-05	25.4	0.0	1.9e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N_2	PF16884.5	gi|564287650|ref|YP_008873896.1|	-	0.0016	18.3	0.0	0.0037	17.1	0.0	1.6	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
Shikimate_DH	PF01488.20	gi|564287650|ref|YP_008873896.1|	-	0.04	14.0	0.0	0.066	13.3	0.0	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
IclR	PF01614.18	gi|564287651|ref|YP_008873897.1|	-	1.9e-26	92.4	0.0	3.6e-26	91.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564287651|ref|YP_008873897.1|	-	2.1e-14	53.1	0.1	2.7e-13	49.5	0.0	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564287651|ref|YP_008873897.1|	-	1e-07	31.7	0.0	2.5e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564287651|ref|YP_008873897.1|	-	7.4e-07	29.0	0.0	2.9e-06	27.0	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|564287651|ref|YP_008873897.1|	-	8e-06	25.3	0.0	1.6e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564287651|ref|YP_008873897.1|	-	1.1e-05	25.2	0.0	5e-05	23.1	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|564287651|ref|YP_008873897.1|	-	2.8e-05	24.1	0.0	7.8e-05	22.7	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|564287651|ref|YP_008873897.1|	-	0.00058	19.7	0.0	0.0014	18.5	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|564287651|ref|YP_008873897.1|	-	0.0022	17.9	0.0	0.0041	17.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|564287651|ref|YP_008873897.1|	-	0.0083	16.4	0.0	0.022	15.1	0.0	1.7	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_Crp_2	PF13545.6	gi|564287651|ref|YP_008873897.1|	-	0.025	14.6	0.0	0.19	11.7	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_22	PF13309.6	gi|564287651|ref|YP_008873897.1|	-	0.06	13.4	0.0	0.17	12.0	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
HTH_DeoR	PF08220.12	gi|564287651|ref|YP_008873897.1|	-	0.07	12.9	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_40	PF14493.6	gi|564287651|ref|YP_008873897.1|	-	0.11	13.0	0.0	0.23	12.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4399	PF14347.6	gi|564287651|ref|YP_008873897.1|	-	0.13	12.7	0.1	0.27	11.6	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4399)
HTH_23	PF13384.6	gi|564287651|ref|YP_008873897.1|	-	0.13	12.1	0.0	0.36	10.7	0.0	1.7	2	0	0	2	2	1	0	Homeodomain-like	domain
HTH_28	PF13518.6	gi|564287651|ref|YP_008873897.1|	-	0.13	12.4	0.0	0.31	11.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MR_MLE_C	PF13378.6	gi|564287652|ref|YP_008873898.1|	-	4.5e-57	193.1	0.1	6.2e-57	192.7	0.1	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564287652|ref|YP_008873898.1|	-	5.9e-26	91.0	0.0	1.8e-25	89.4	0.0	1.8	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
PEP_mutase	PF13714.6	gi|564287652|ref|YP_008873898.1|	-	0.04	13.4	0.1	0.07	12.6	0.1	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate	phosphomutase
SIS	PF01380.22	gi|564287824|ref|YP_008873899.1|	-	4e-27	94.7	0.5	6.7e-19	68.0	0.2	2.1	2	0	0	2	2	2	2	SIS	domain
SIS_2	PF13580.6	gi|564287824|ref|YP_008873899.1|	-	8.7e-06	25.8	2.2	0.00077	19.5	0.0	2.7	3	1	0	3	3	3	2	SIS	domain
SBP_bac_8	PF13416.6	gi|564287653|ref|YP_008873900.1|	-	2.1e-27	96.7	4.2	2.1e-27	96.7	4.2	1.7	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564287653|ref|YP_008873900.1|	-	6.7e-19	69.0	6.2	6.7e-19	69.0	6.2	1.6	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|564287653|ref|YP_008873900.1|	-	4.5e-05	23.0	0.4	0.0032	16.9	0.0	2.2	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564287653|ref|YP_008873900.1|	-	0.013	15.4	1.9	0.022	14.6	1.9	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|564287654|ref|YP_008873901.1|	-	1.9e-21	76.6	14.1	1.9e-21	76.6	14.1	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF1761	PF08570.10	gi|564287654|ref|YP_008873901.1|	-	0.044	14.0	0.9	0.044	14.0	0.9	3.3	3	2	1	4	4	4	0	Protein	of	unknown	function	(DUF1761)
BPD_transp_1	PF00528.22	gi|564287655|ref|YP_008873902.1|	-	2.1e-19	70.0	14.2	2.1e-19	70.0	14.2	2.1	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Glyco_hydro_3	PF00933.21	gi|564287656|ref|YP_008873903.1|	-	1.8e-100	336.4	0.0	2.3e-100	336.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|564287656|ref|YP_008873903.1|	-	0.00035	20.6	0.2	0.00083	19.4	0.1	1.6	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
PIG-L	PF02585.17	gi|564287657|ref|YP_008873904.1|	-	8.8e-33	113.7	0.4	1.3e-32	113.1	0.4	1.3	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
Glyco_transf_4	PF13439.6	gi|564287657|ref|YP_008873904.1|	-	0.092	12.7	0.0	0.13	12.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
SelA	PF03841.13	gi|564287658|ref|YP_008873905.1|	-	1.4e-08	34.2	4.0	6.2e-07	28.7	1.1	3.6	2	1	0	2	2	2	1	L-seryl-tRNA	selenium	transferase
Aminotran_5	PF00266.19	gi|564287658|ref|YP_008873905.1|	-	2.1e-08	33.5	0.0	4e-08	32.6	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|564287658|ref|YP_008873905.1|	-	3.5e-06	26.6	0.3	7.5e-06	25.5	0.1	1.6	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|564287658|ref|YP_008873905.1|	-	6.5e-06	24.9	0.0	1e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Beta_elim_lyase	PF01212.21	gi|564287658|ref|YP_008873905.1|	-	5.4e-05	22.6	0.0	0.00012	21.5	0.0	1.6	2	0	0	2	2	2	1	Beta-eliminating	lyase
SepSecS	PF05889.13	gi|564287658|ref|YP_008873905.1|	-	0.00037	19.3	0.0	0.00049	18.9	0.0	1.2	1	0	0	1	1	1	1	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
NAD_binding_3	PF03447.16	gi|564287658|ref|YP_008873905.1|	-	0.012	16.3	0.4	0.42	11.3	0.0	2.5	2	0	0	2	2	2	0	Homoserine	dehydrogenase,	NAD	binding	domain
ABC_tran	PF00005.27	gi|564287659|ref|YP_008873906.1|	-	1.1e-30	106.9	0.0	1.8e-30	106.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|564287659|ref|YP_008873906.1|	-	9.5e-14	52.0	0.0	7.2e-12	46.0	0.0	2.9	2	0	0	2	2	2	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|564287659|ref|YP_008873906.1|	-	2e-13	50.3	0.4	5.5e-13	48.9	0.4	1.8	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|564287659|ref|YP_008873906.1|	-	5.6e-08	33.0	0.0	0.00081	19.3	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|564287659|ref|YP_008873906.1|	-	1.5e-06	28.6	2.0	4.8e-06	27.0	0.0	2.8	4	0	0	4	4	2	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|564287659|ref|YP_008873906.1|	-	4.9e-05	22.9	0.3	0.00025	20.6	0.3	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564287659|ref|YP_008873906.1|	-	0.00048	20.4	0.7	0.0022	18.3	0.7	2.0	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564287659|ref|YP_008873906.1|	-	0.001	19.0	0.0	0.0018	18.2	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
TOBE	PF03459.17	gi|564287659|ref|YP_008873906.1|	-	0.0019	18.5	0.3	0.0046	17.2	0.3	1.8	1	0	0	1	1	1	1	TOBE	domain
RsgA_GTPase	PF03193.16	gi|564287659|ref|YP_008873906.1|	-	0.0026	17.7	0.0	0.0053	16.7	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|564287659|ref|YP_008873906.1|	-	0.0036	17.7	0.1	0.0061	17.0	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|564287659|ref|YP_008873906.1|	-	0.02	14.5	0.1	0.39	10.3	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.16	gi|564287659|ref|YP_008873906.1|	-	0.023	14.1	0.1	2.2	7.7	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
AAA_30	PF13604.6	gi|564287659|ref|YP_008873906.1|	-	0.024	14.4	0.0	0.042	13.6	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|564287659|ref|YP_008873906.1|	-	0.034	13.9	0.0	0.076	12.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|564287659|ref|YP_008873906.1|	-	0.035	14.5	0.1	0.15	12.5	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT_C	PF16565.5	gi|564287659|ref|YP_008873906.1|	-	0.049	13.6	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Phospholipase	D-like	domain	at	C-terminus	of	MIT
AAA_15	PF13175.6	gi|564287659|ref|YP_008873906.1|	-	0.057	13.1	0.0	1.4	8.6	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.18	gi|564287659|ref|YP_008873906.1|	-	0.073	12.4	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_33	PF13671.6	gi|564287659|ref|YP_008873906.1|	-	0.12	12.5	1.4	0.31	11.2	1.4	1.9	1	1	0	1	1	1	0	AAA	domain
Hexapep_2	PF14602.6	gi|564287659|ref|YP_008873906.1|	-	0.5	10.2	3.0	6.5	6.6	0.2	2.9	3	0	0	3	3	3	0	Hexapeptide	repeat	of	succinyl-transferase
IclR	PF01614.18	gi|564287660|ref|YP_008873907.1|	-	3e-17	62.7	0.0	9.4e-17	61.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564287660|ref|YP_008873907.1|	-	9.1e-15	54.2	0.6	6.1e-14	51.5	0.2	2.5	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564287660|ref|YP_008873907.1|	-	1.2e-06	28.3	0.1	2.4e-06	27.3	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564287660|ref|YP_008873907.1|	-	3.4e-06	26.5	0.0	9.6e-06	25.1	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|564287660|ref|YP_008873907.1|	-	3.5e-06	27.0	0.1	1.8e-05	24.7	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287660|ref|YP_008873907.1|	-	6.9e-05	22.7	0.1	0.00014	21.7	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564287660|ref|YP_008873907.1|	-	0.00063	19.6	0.1	0.0013	18.6	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|564287660|ref|YP_008873907.1|	-	0.00067	19.5	0.1	0.0012	18.7	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.19	gi|564287660|ref|YP_008873907.1|	-	0.0029	17.8	0.1	0.006	16.8	0.1	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.22	gi|564287660|ref|YP_008873907.1|	-	0.0042	17.0	0.0	0.0082	16.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|564287660|ref|YP_008873907.1|	-	0.0061	16.9	0.0	0.012	15.9	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
DUF742	PF05331.11	gi|564287660|ref|YP_008873907.1|	-	0.0072	16.1	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
RPA_C	PF08784.11	gi|564287660|ref|YP_008873907.1|	-	0.014	16.0	0.0	0.03	15.0	0.0	1.5	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_34	PF13601.6	gi|564287660|ref|YP_008873907.1|	-	0.017	15.3	0.1	0.037	14.2	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|564287660|ref|YP_008873907.1|	-	0.023	14.5	0.0	0.061	13.1	0.0	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_9	PF08221.11	gi|564287660|ref|YP_008873907.1|	-	0.027	14.6	0.1	0.082	13.0	0.1	1.8	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564287660|ref|YP_008873907.1|	-	0.057	13.3	0.0	0.16	11.8	0.0	1.9	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
GntR	PF00392.21	gi|564287660|ref|YP_008873907.1|	-	0.064	12.9	0.4	0.18	11.5	0.1	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_45	PF14947.6	gi|564287660|ref|YP_008873907.1|	-	0.099	12.6	0.0	0.23	11.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
ABC_tran	PF00005.27	gi|564287661|ref|YP_008873908.1|	-	2.7e-32	112.2	0.0	4e-32	111.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287661|ref|YP_008873908.1|	-	3e-09	37.1	3.2	0.00018	21.5	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564287661|ref|YP_008873908.1|	-	0.0056	16.4	0.1	0.01	15.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
BCA_ABC_TP_C	PF12399.8	gi|564287661|ref|YP_008873908.1|	-	0.0056	16.6	0.1	0.012	15.5	0.1	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_22	PF13401.6	gi|564287661|ref|YP_008873908.1|	-	0.013	15.8	0.7	0.13	12.6	0.7	2.0	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|564287661|ref|YP_008873908.1|	-	0.014	14.6	0.2	0.024	13.8	0.2	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_16	PF13191.6	gi|564287661|ref|YP_008873908.1|	-	0.016	15.6	0.2	0.027	14.9	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.6	gi|564287661|ref|YP_008873908.1|	-	0.022	14.4	0.1	0.099	12.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|564287661|ref|YP_008873908.1|	-	0.038	13.7	0.6	0.1	12.3	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564287661|ref|YP_008873908.1|	-	0.043	13.9	0.5	0.087	12.9	0.5	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.12	gi|564287661|ref|YP_008873908.1|	-	0.047	13.0	0.0	0.092	12.0	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA	PF00004.29	gi|564287661|ref|YP_008873908.1|	-	0.052	14.0	0.0	0.097	13.1	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|564287661|ref|YP_008873908.1|	-	0.074	12.5	0.2	4.8	6.5	0.2	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
SRP54	PF00448.22	gi|564287661|ref|YP_008873908.1|	-	0.074	12.7	0.2	0.11	12.1	0.2	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_15	PF13175.6	gi|564287661|ref|YP_008873908.1|	-	0.076	12.7	0.2	0.15	11.7	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
Sigma70_r1_1	PF03979.14	gi|564287661|ref|YP_008873908.1|	-	0.11	12.5	0.3	0.27	11.3	0.1	1.7	2	0	0	2	2	1	0	Sigma-70	factor,	region	1.1
NACHT	PF05729.12	gi|564287661|ref|YP_008873908.1|	-	0.11	12.4	0.1	0.21	11.5	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|564287661|ref|YP_008873908.1|	-	0.21	11.5	2.3	0.15	12.0	0.7	1.5	2	0	0	2	2	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|564287661|ref|YP_008873908.1|	-	0.26	11.8	0.3	0.47	10.9	0.2	1.4	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|564287662|ref|YP_008873909.1|	-	4.4e-26	92.0	0.0	6e-26	91.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.8	gi|564287662|ref|YP_008873909.1|	-	1.2e-09	37.8	0.1	2.7e-09	36.7	0.1	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.6	gi|564287662|ref|YP_008873909.1|	-	0.00016	22.3	0.0	0.00018	22.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564287662|ref|YP_008873909.1|	-	0.0021	17.8	0.3	0.0035	17.1	0.3	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|564287662|ref|YP_008873909.1|	-	0.0022	17.9	1.6	0.034	14.0	0.5	2.2	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287662|ref|YP_008873909.1|	-	0.0031	17.0	0.0	0.0045	16.4	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|564287662|ref|YP_008873909.1|	-	0.0036	16.9	0.1	0.0081	15.8	0.0	1.5	2	0	0	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|564287662|ref|YP_008873909.1|	-	0.017	14.4	0.0	0.03	13.6	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_16	PF13191.6	gi|564287662|ref|YP_008873909.1|	-	0.039	14.3	0.2	0.084	13.3	0.2	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287662|ref|YP_008873909.1|	-	0.063	13.0	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA	PF00004.29	gi|564287662|ref|YP_008873909.1|	-	0.065	13.7	0.3	0.17	12.3	0.1	1.8	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
BPD_transp_2	PF02653.16	gi|564287663|ref|YP_008873910.1|	-	1e-83	280.6	79.1	8.7e-48	162.8	37.1	2.1	2	0	0	2	2	2	2	Branched-chain	amino	acid	transport	system	/	permease	component
Coa1	PF08695.10	gi|564287663|ref|YP_008873910.1|	-	0.062	13.0	0.3	0.6	9.9	0.0	2.7	3	0	0	3	3	3	0	Cytochrome	oxidase	complex	assembly	protein	1
Peripla_BP_6	PF13458.6	gi|564287664|ref|YP_008873911.1|	-	4.5e-60	204.1	11.9	5.5e-60	203.8	11.9	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564287664|ref|YP_008873911.1|	-	1.9e-27	96.2	0.3	2.3e-27	96.0	0.3	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.28	gi|564287664|ref|YP_008873911.1|	-	2.1e-10	40.2	0.1	4.2e-10	39.2	0.1	1.4	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.9	gi|564287664|ref|YP_008873911.1|	-	0.0012	18.6	3.7	0.0036	17.1	3.7	1.9	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|564287664|ref|YP_008873911.1|	-	0.025	13.9	0.5	0.071	12.5	0.5	1.8	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Penicil_amidase	PF01804.18	gi|564287825|ref|YP_008873912.1|	-	1e-117	394.9	13.1	1e-117	394.9	13.1	1.3	2	0	0	2	2	2	1	Penicillin	amidase
TAT_signal	PF10518.9	gi|564287825|ref|YP_008873912.1|	-	0.00059	19.6	0.1	0.00059	19.6	0.1	3.2	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glyoxalase_4	PF13669.6	gi|564287665|ref|YP_008873913.1|	-	3.3e-15	56.3	0.0	4.3e-15	55.9	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|564287665|ref|YP_008873913.1|	-	1.9e-05	24.8	0.1	4.9e-05	23.5	0.1	1.6	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.25	gi|564287665|ref|YP_008873913.1|	-	8.1e-05	22.8	0.0	9.9e-05	22.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
MmlI	PF09448.10	gi|564287666|ref|YP_008873914.1|	-	2.4e-15	57.0	0.2	4.3e-14	52.9	0.2	2.0	1	1	0	1	1	1	1	Methylmuconolactone	methyl-isomerase
EthD	PF07110.11	gi|564287666|ref|YP_008873914.1|	-	1.8e-14	54.7	3.9	6e-14	53.0	3.9	1.7	1	1	0	1	1	1	1	EthD	domain
Dabb	PF07876.12	gi|564287666|ref|YP_008873914.1|	-	0.084	13.5	0.0	0.097	13.3	0.0	1.2	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
IclR	PF01614.18	gi|574087271|ref|YP_008873915.2|	-	1.5e-28	99.2	0.0	3.6e-28	98.0	0.0	1.6	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|574087271|ref|YP_008873915.2|	-	5.4e-11	42.1	0.2	1.2e-10	41.0	0.1	1.7	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|574087271|ref|YP_008873915.2|	-	4.4e-05	23.1	0.1	0.00011	21.9	0.1	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|574087271|ref|YP_008873915.2|	-	0.00054	19.8	0.1	0.0011	18.7	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|574087271|ref|YP_008873915.2|	-	0.0036	17.3	0.1	0.016	15.3	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|574087271|ref|YP_008873915.2|	-	0.0049	16.8	0.1	0.019	14.9	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|574087271|ref|YP_008873915.2|	-	0.0098	15.8	0.1	0.025	14.5	0.1	1.7	1	0	0	1	1	1	1	MarR	family
SpoIIID	PF12116.8	gi|574087271|ref|YP_008873915.2|	-	0.015	15.3	0.3	0.038	14.1	0.3	1.7	1	1	0	1	1	1	0	Stage	III	sporulation	protein	D
MarR_2	PF12802.7	gi|574087271|ref|YP_008873915.2|	-	0.017	15.0	0.0	0.065	13.1	0.0	2.0	2	0	0	2	2	2	0	MarR	family
DUF1803	PF08820.10	gi|574087271|ref|YP_008873915.2|	-	0.018	15.1	0.2	0.038	14.0	0.1	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1803)
HTH_45	PF14947.6	gi|574087271|ref|YP_008873915.2|	-	0.023	14.7	0.1	0.039	13.9	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_24	PF13412.6	gi|574087271|ref|YP_008873915.2|	-	0.04	13.5	0.0	0.091	12.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
ECH_1	PF00378.20	gi|564287668|ref|YP_008873916.1|	-	9.9e-68	228.2	0.0	1.1e-67	228.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564287668|ref|YP_008873916.1|	-	4.7e-37	128.2	0.0	5.6e-30	105.0	0.0	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
3HCDH_N	PF02737.18	gi|564287669|ref|YP_008873917.1|	-	2.1e-63	213.4	4.3	2.9e-63	213.0	4.3	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|564287669|ref|YP_008873917.1|	-	1.3e-31	109.1	0.1	6.4e-31	106.8	0.0	2.1	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564287669|ref|YP_008873917.1|	-	4.7e-06	26.7	0.3	1.1e-05	25.5	0.3	1.6	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
UDPG_MGDP_dh_N	PF03721.14	gi|564287669|ref|YP_008873917.1|	-	1.2e-05	24.9	0.3	2e-05	24.2	0.3	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|564287669|ref|YP_008873917.1|	-	0.00035	20.8	2.2	0.00035	20.8	2.2	2.1	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|564287669|ref|YP_008873917.1|	-	0.013	15.7	1.0	0.043	14.1	1.0	1.9	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|564287669|ref|YP_008873917.1|	-	0.027	15.0	6.4	0.066	13.8	3.4	2.5	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
MORN	PF02493.20	gi|564287669|ref|YP_008873917.1|	-	0.045	13.6	0.1	0.1	12.5	0.1	1.6	1	0	0	1	1	1	0	MORN	repeat
ApbA	PF02558.16	gi|564287669|ref|YP_008873917.1|	-	0.09	12.4	0.1	0.14	11.8	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NmrA	PF05368.13	gi|564287669|ref|YP_008873917.1|	-	0.16	11.5	0.5	0.25	10.9	0.5	1.3	1	0	0	1	1	1	0	NmrA-like	family
Thiolase_N	PF00108.23	gi|564287670|ref|YP_008873918.1|	-	3.7e-59	200.2	0.6	2.6e-58	197.4	0.6	1.9	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564287670|ref|YP_008873918.1|	-	3.4e-47	159.1	0.1	6.6e-47	158.2	0.1	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III_C	PF08541.10	gi|564287670|ref|YP_008873918.1|	-	0.0058	16.8	0.0	0.013	15.6	0.0	1.6	1	0	0	1	1	1	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
DUF35_N	PF12172.8	gi|564287671|ref|YP_008873919.1|	-	1e-10	41.2	2.9	6e-10	38.8	3.8	1.9	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OB_aCoA_assoc	PF01796.17	gi|564287671|ref|YP_008873919.1|	-	0.005	16.8	1.2	0.023	14.7	1.2	2.2	1	1	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
ACP_syn_III_C	PF08541.10	gi|564287671|ref|YP_008873919.1|	-	0.1	12.8	0.2	0.23	11.6	0.2	1.6	1	0	0	1	1	1	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
Rubredoxin_2	PF18073.1	gi|564287671|ref|YP_008873919.1|	-	0.88	9.3	2.3	1.7	8.4	2.3	1.5	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
Thiolase_N	PF00108.23	gi|564287672|ref|YP_008873920.1|	-	8.5e-25	87.6	0.9	2.7e-24	85.9	0.9	1.8	1	1	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564287672|ref|YP_008873920.1|	-	5.9e-10	38.9	0.4	1.6e-09	37.5	0.1	1.9	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|564287672|ref|YP_008873920.1|	-	8.4e-09	35.4	2.3	1.8e-08	34.3	2.3	1.5	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.10	gi|564287672|ref|YP_008873920.1|	-	0.0059	16.4	1.0	0.071	13.0	0.3	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
AMP-binding_C_2	PF14535.6	gi|564287673|ref|YP_008873921.1|	-	2.9e-20	72.4	0.0	5.7e-20	71.4	0.0	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.28	gi|564287673|ref|YP_008873921.1|	-	2.7e-14	52.6	0.2	8.3e-14	51.0	0.2	1.9	1	1	0	1	1	1	1	AMP-binding	enzyme
LuxE	PF04443.12	gi|564287673|ref|YP_008873921.1|	-	0.0019	17.3	0.0	0.024	13.7	0.0	2.0	2	0	0	2	2	2	1	Acyl-protein	synthetase,	LuxE
GH3	PF03321.13	gi|564287673|ref|YP_008873921.1|	-	0.0031	16.4	0.0	0.018	13.9	0.0	1.9	2	0	0	2	2	2	1	GH3	auxin-responsive	promoter
4HBT	PF03061.22	gi|564287674|ref|YP_008873922.1|	-	8.7e-14	51.6	0.6	1.5e-13	50.9	0.6	1.4	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|564287674|ref|YP_008873922.1|	-	1.2e-09	38.4	0.1	1.5e-09	38.0	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|564287674|ref|YP_008873922.1|	-	0.0071	16.6	0.2	0.0085	16.4	0.2	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
PS-DH	PF14765.6	gi|564287674|ref|YP_008873922.1|	-	0.035	13.4	0.0	0.04	13.2	0.0	1.2	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
MaoC_dehydratas	PF01575.19	gi|564287674|ref|YP_008873922.1|	-	0.078	12.5	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	MaoC	like	domain
MaoC_dehydratas	PF01575.19	gi|564287675|ref|YP_008873923.1|	-	6.3e-18	64.5	0.1	7.8e-18	64.2	0.1	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564287675|ref|YP_008873923.1|	-	0.00024	21.2	0.5	0.00093	19.3	0.5	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Aldedh	PF00171.22	gi|564287676|ref|YP_008873924.1|	-	3.9e-171	569.6	2.6	4.4e-171	569.5	2.6	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
TF_Zn_Ribbon	PF08271.12	gi|564287677|ref|YP_008873925.1|	-	0.0043	16.5	0.7	0.0043	16.5	0.7	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
Lar_restr_allev	PF14354.6	gi|564287677|ref|YP_008873925.1|	-	0.016	15.6	3.8	0.017	15.5	3.8	1.1	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_9	PF14369.6	gi|564287677|ref|YP_008873925.1|	-	0.051	13.8	3.9	0.52	10.6	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon
zf-ISL3	PF14690.6	gi|564287677|ref|YP_008873925.1|	-	0.056	14.1	5.6	0.086	13.5	5.5	1.4	1	1	0	1	1	1	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-H2C2_2	PF13465.6	gi|564287677|ref|YP_008873925.1|	-	0.091	13.2	5.5	4.3	7.9	2.0	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
Zn-ribbon_8	PF09723.10	gi|564287677|ref|YP_008873925.1|	-	0.11	12.7	0.2	0.11	12.7	0.2	2.3	2	1	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564287677|ref|YP_008873925.1|	-	0.24	11.4	6.4	0.37	10.8	6.4	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
PSI_integrin	PF17205.3	gi|564287677|ref|YP_008873925.1|	-	0.29	10.9	6.4	2.5	7.9	1.2	2.1	1	1	1	2	2	2	0	Integrin	plexin	domain
FeS_assembly_P	PF01883.19	gi|564287678|ref|YP_008873926.1|	-	3.7e-23	81.5	0.2	5.7e-23	80.9	0.2	1.3	1	0	0	1	1	1	1	Iron-sulfur	cluster	assembly	protein
PaaA_PaaC	PF05138.12	gi|564287679|ref|YP_008873927.1|	-	6.2e-58	196.0	2.0	8.2e-58	195.6	2.0	1.0	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
MiaE_2	PF13794.6	gi|564287679|ref|YP_008873927.1|	-	0.004	16.9	0.6	0.012	15.4	0.6	1.8	1	1	0	1	1	1	1	tRNA-(MS[2]IO[6]A)-hydroxylase	(MiaE)-like
GSP_synth	PF03738.14	gi|564287679|ref|YP_008873927.1|	-	0.017	14.3	0.4	0.41	9.7	0.1	2.1	1	1	1	2	2	2	0	Glutathionylspermidine	synthase	preATP-grasp
DUF1799	PF08809.11	gi|564287679|ref|YP_008873927.1|	-	0.065	13.4	0.0	0.23	11.6	0.0	1.9	1	0	0	1	1	1	0	Phage	related	hypothetical	protein	(DUF1799)
PaaB	PF06243.11	gi|564287680|ref|YP_008873928.1|	-	4.2e-24	84.6	0.2	3e-12	46.6	0.1	2.1	2	0	0	2	2	2	2	Phenylacetic	acid	degradation	B
PaaA_PaaC	PF05138.12	gi|564287681|ref|YP_008873929.1|	-	4.5e-73	245.6	0.1	5.6e-73	245.3	0.1	1.0	1	0	0	1	1	1	1	Phenylacetic	acid	catabolic	protein
HTH_10	PF04967.12	gi|564287682|ref|YP_008873930.1|	-	2.5e-17	62.4	0.1	4.2e-17	61.7	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564287682|ref|YP_008873930.1|	-	7.3e-05	22.7	0.0	0.00012	21.9	0.0	1.4	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|564287682|ref|YP_008873930.1|	-	0.02	14.8	0.1	0.077	12.9	0.1	2.1	2	1	0	2	2	2	0	MarR	family
HTH_24	PF13412.6	gi|564287682|ref|YP_008873930.1|	-	0.18	11.4	0.0	0.48	10.0	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
SpoIIID	PF12116.8	gi|564287682|ref|YP_008873930.1|	-	0.18	11.9	0.0	0.36	11.0	0.0	1.4	1	0	0	1	1	1	0	Stage	III	sporulation	protein	D
ECH_1	PF00378.20	gi|564287683|ref|YP_008873931.1|	-	3.2e-50	170.8	0.1	3.8e-50	170.5	0.1	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564287683|ref|YP_008873931.1|	-	1.8e-27	96.7	0.1	2.4e-27	96.3	0.1	1.2	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
Amidohydro_2	PF04909.14	gi|564287684|ref|YP_008873932.1|	-	5e-45	154.5	1.5	6.6e-45	154.1	1.5	1.2	1	0	0	1	1	1	1	Amidohydrolase
TatD_DNase	PF01026.21	gi|564287684|ref|YP_008873932.1|	-	0.0051	16.2	0.0	0.064	12.6	0.0	2.1	1	1	0	1	1	1	1	TatD	related	DNase
HpcH_HpaI	PF03328.14	gi|564287685|ref|YP_008873933.1|	-	4.9e-56	189.3	2.8	6.8e-56	188.9	2.8	1.2	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.6	gi|564287685|ref|YP_008873933.1|	-	3.8e-14	52.6	0.0	5.9e-08	32.2	0.0	2.1	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
Methyltransf_11	PF08241.12	gi|564287686|ref|YP_008873934.1|	-	1.3e-16	61.0	0.0	2.5e-16	60.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564287686|ref|YP_008873934.1|	-	2.9e-13	50.3	0.0	6.3e-13	49.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564287686|ref|YP_008873934.1|	-	3.6e-08	33.4	0.0	6e-08	32.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564287686|ref|YP_008873934.1|	-	3.5e-07	30.2	0.0	4.2e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564287686|ref|YP_008873934.1|	-	1.7e-06	28.7	0.0	3.1e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564287686|ref|YP_008873934.1|	-	1.3e-05	24.7	0.0	2.6e-05	23.7	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_8	PF05148.15	gi|564287686|ref|YP_008873934.1|	-	0.00016	21.6	0.0	0.00022	21.1	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
MTS	PF05175.14	gi|564287686|ref|YP_008873934.1|	-	0.22	11.1	0.2	1.1	8.8	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	small	domain
MaoC_dehydratas	PF01575.19	gi|564287687|ref|YP_008873935.1|	-	3.9e-26	91.0	0.2	4.8e-26	90.7	0.2	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564287687|ref|YP_008873935.1|	-	0.0022	18.2	0.4	0.0072	16.5	0.4	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
Carboxyl_trans	PF01039.22	gi|564287688|ref|YP_008873936.1|	-	1.9e-129	432.5	0.0	2.4e-129	432.2	0.0	1.1	1	0	0	1	1	1	1	Carboxyl	transferase	domain
CPSase_L_D2	PF02786.17	gi|564287689|ref|YP_008873937.1|	-	1.4e-75	253.4	0.2	1.4e-75	253.4	0.2	1.9	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|564287689|ref|YP_008873937.1|	-	9.8e-44	148.4	0.1	1.9e-43	147.5	0.1	1.5	1	0	0	1	1	1	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|564287689|ref|YP_008873937.1|	-	6.3e-37	126.0	0.0	1.3e-36	124.9	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_lipoyl	PF00364.22	gi|564287689|ref|YP_008873937.1|	-	3.1e-16	59.0	3.6	1.1e-15	57.3	3.1	2.2	2	0	0	2	2	2	1	Biotin-requiring	enzyme
ATP-grasp	PF02222.22	gi|564287689|ref|YP_008873937.1|	-	7.4e-10	38.7	0.2	1.5e-09	37.6	0.2	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|564287689|ref|YP_008873937.1|	-	2.3e-09	37.1	0.0	4.4e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
GARS_A	PF01071.19	gi|564287689|ref|YP_008873937.1|	-	2.2e-05	24.3	0.1	4.9e-05	23.2	0.1	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Biotin_lipoyl_2	PF13533.6	gi|564287689|ref|YP_008873937.1|	-	4.5e-05	23.2	1.5	0.0079	16.0	0.1	3.0	2	1	1	3	3	3	1	Biotin-lipoyl	like
ATP-grasp_3	PF02655.14	gi|564287689|ref|YP_008873937.1|	-	0.00054	20.0	0.0	0.00087	19.4	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|564287689|ref|YP_008873937.1|	-	0.0059	16.3	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
HlyD_D23	PF16576.5	gi|564287689|ref|YP_008873937.1|	-	0.03	13.5	0.7	3.4	6.8	0.1	2.4	1	1	1	2	2	2	0	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
ATP-grasp_5	PF13549.6	gi|564287689|ref|YP_008873937.1|	-	0.054	12.9	0.0	0.094	12.2	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
HlyD_3	PF13437.6	gi|564287689|ref|YP_008873937.1|	-	0.083	13.6	0.6	8.1	7.2	0.2	3.1	2	0	0	2	2	2	0	HlyD	family	secretion	protein
RnfC_N	PF13375.6	gi|564287689|ref|YP_008873937.1|	-	0.22	11.5	1.0	0.89	9.6	0.4	2.4	3	0	0	3	3	3	0	RnfC	Barrel	sandwich	hybrid	domain
Acyl-CoA_dh_1	PF00441.24	gi|564287690|ref|YP_008873938.1|	-	3.5e-29	101.9	0.6	5.4e-29	101.3	0.6	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564287690|ref|YP_008873938.1|	-	1.6e-23	82.7	0.0	3.7e-23	81.5	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|564287690|ref|YP_008873938.1|	-	4.5e-23	82.1	2.1	8.4e-23	81.2	2.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|564287690|ref|YP_008873938.1|	-	2e-16	60.5	0.5	3.5e-16	59.7	0.5	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AMP-binding	PF00501.28	gi|564287691|ref|YP_008873939.1|	-	1e-85	287.9	0.0	1.3e-85	287.6	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564287691|ref|YP_008873939.1|	-	3.7e-20	72.7	1.2	3.7e-20	72.7	1.2	1.8	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
UbiD	PF01977.16	gi|564287692|ref|YP_008873940.1|	-	7.8e-27	94.2	0.0	1.1e-26	93.6	0.0	1.1	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
UbiD	PF01977.16	gi|564287693|ref|YP_008873941.1|	-	2.9e-102	342.6	0.0	4e-102	342.1	0.0	1.1	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
Peptidase_M41	PF01434.18	gi|564287694|ref|YP_008873942.1|	-	0.12	12.2	0.8	0.19	11.5	0.1	1.6	2	0	0	2	2	2	0	Peptidase	family	M41
ABC1	PF03109.16	gi|564287695|ref|YP_008873943.1|	-	4.7e-20	71.9	0.0	9e-20	71.0	0.0	1.5	1	0	0	1	1	1	1	ABC1	family
APH	PF01636.23	gi|564287695|ref|YP_008873943.1|	-	0.074	13.0	7.5	0.045	13.7	1.7	3.1	2	1	2	4	4	4	0	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|564287695|ref|YP_008873943.1|	-	0.15	11.4	0.0	0.23	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	kinase	domain
Ion_trans_N	PF08412.10	gi|564287695|ref|YP_008873943.1|	-	0.21	11.2	0.0	0.6	9.8	0.1	1.7	2	0	0	2	2	2	0	Ion	transport	protein	N-terminal
DUF4010	PF13194.6	gi|564287696|ref|YP_008873944.1|	-	1e-69	234.4	15.8	1e-69	234.4	15.8	3.1	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|564287696|ref|YP_008873944.1|	-	2.1e-10	41.0	12.1	2.1e-10	41.0	12.1	3.5	3	2	0	3	3	3	1	MgtC	family
PhoLip_ATPase_C	PF16212.5	gi|564287696|ref|YP_008873944.1|	-	1.7	8.3	6.7	0.69	9.6	0.2	2.3	1	1	1	2	2	2	0	Phospholipid-translocating	P-type	ATPase	C-terminal
E1-E2_ATPase	PF00122.20	gi|564287697|ref|YP_008873945.1|	-	5.1e-57	192.3	1.5	1.1e-56	191.2	1.5	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564287697|ref|YP_008873945.1|	-	3e-39	135.5	13.5	6.1e-39	134.5	11.2	2.5	2	1	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564287697|ref|YP_008873945.1|	-	1.5e-15	57.3	1.0	2.2e-14	53.6	0.1	3.0	3	0	0	3	3	3	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564287697|ref|YP_008873945.1|	-	0.0014	18.4	1.0	0.02	14.7	0.7	2.2	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564287697|ref|YP_008873945.1|	-	0.0034	17.8	0.4	0.018	15.5	0.4	2.3	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HTH_10	PF04967.12	gi|564287698|ref|YP_008873946.1|	-	2.4e-16	59.2	0.3	8.4e-16	57.5	0.1	1.9	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_30	PF13556.6	gi|564287698|ref|YP_008873946.1|	-	3.5e-05	23.5	0.2	0.00025	20.8	0.1	2.4	2	0	0	2	2	2	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287698|ref|YP_008873946.1|	-	7.8e-05	22.5	0.2	0.00032	20.5	0.1	2.2	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|564287698|ref|YP_008873946.1|	-	0.0026	17.8	0.5	0.016	15.3	0.0	2.5	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_8	PF02954.19	gi|564287698|ref|YP_008873946.1|	-	0.0048	16.7	0.0	0.011	15.5	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_24	PF13412.6	gi|564287698|ref|YP_008873946.1|	-	0.0067	16.0	0.0	0.015	14.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_psq	PF05225.16	gi|564287698|ref|YP_008873946.1|	-	0.023	14.4	0.1	0.085	12.6	0.1	2.0	1	1	0	1	1	1	0	helix-turn-helix,	Psq	domain
HTH_IclR	PF09339.10	gi|564287698|ref|YP_008873946.1|	-	0.052	13.3	0.2	0.26	11.1	0.0	2.2	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564287698|ref|YP_008873946.1|	-	0.06	13.2	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|564287698|ref|YP_008873946.1|	-	0.087	13.0	0.1	0.23	11.6	0.1	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.22	gi|564287698|ref|YP_008873946.1|	-	0.16	11.9	0.0	0.82	9.6	0.0	2.2	2	0	0	2	2	2	0	MarR	family
Cdc6_C	PF09079.11	gi|564287699|ref|YP_008873947.1|	-	4.8e-17	61.7	0.0	1.2e-16	60.4	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|564287699|ref|YP_008873947.1|	-	2.3e-12	47.6	3.2	1.7e-11	44.8	0.4	2.7	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564287699|ref|YP_008873947.1|	-	7.7e-12	45.7	0.0	1e-10	42.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|564287699|ref|YP_008873947.1|	-	0.00015	22.2	0.0	0.00035	21.0	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|564287699|ref|YP_008873947.1|	-	0.00088	18.5	0.0	0.0015	17.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_32	PF13654.6	gi|564287699|ref|YP_008873947.1|	-	0.002	17.0	0.0	1.5	7.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
ATPase_2	PF01637.18	gi|564287699|ref|YP_008873947.1|	-	0.0021	18.0	0.0	0.0049	16.8	0.0	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_18	PF13238.6	gi|564287699|ref|YP_008873947.1|	-	0.0042	17.6	0.1	0.021	15.3	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|564287699|ref|YP_008873947.1|	-	0.0057	16.7	0.3	0.21	11.6	0.0	3.0	3	1	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|564287699|ref|YP_008873947.1|	-	0.0074	16.2	0.0	0.016	15.1	0.0	1.7	1	0	0	1	1	1	1	NACHT	domain
AAA_24	PF13479.6	gi|564287699|ref|YP_008873947.1|	-	0.0074	16.0	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
TniB	PF05621.11	gi|564287699|ref|YP_008873947.1|	-	0.0086	15.5	0.0	0.014	14.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|564287699|ref|YP_008873947.1|	-	0.014	15.1	0.0	0.024	14.3	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|564287699|ref|YP_008873947.1|	-	0.018	15.4	0.0	0.034	14.5	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
CbiA	PF01656.23	gi|564287699|ref|YP_008873947.1|	-	0.022	14.8	0.0	0.068	13.2	0.1	1.5	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NTPase_1	PF03266.15	gi|564287699|ref|YP_008873947.1|	-	0.026	14.4	0.0	0.06	13.3	0.0	1.6	1	1	0	1	1	1	0	NTPase
TsaE	PF02367.17	gi|564287699|ref|YP_008873947.1|	-	0.053	13.5	0.0	0.1	12.6	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_7	PF12775.7	gi|564287699|ref|YP_008873947.1|	-	0.068	12.7	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DUF1759	PF03564.15	gi|564287699|ref|YP_008873947.1|	-	0.087	12.8	0.0	0.27	11.1	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1759)
NB-ARC	PF00931.22	gi|564287699|ref|YP_008873947.1|	-	0.12	11.6	0.0	3.3	6.8	0.0	2.2	2	0	0	2	2	2	0	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|564287699|ref|YP_008873947.1|	-	0.12	12.3	0.0	0.29	11.0	0.0	1.6	2	0	0	2	2	1	0	RsgA	GTPase
KAP_NTPase	PF07693.14	gi|564287699|ref|YP_008873947.1|	-	0.13	11.4	0.2	5.6	6.1	0.0	2.1	1	1	1	2	2	2	0	KAP	family	P-loop	domain
OB_aCoA_assoc	PF01796.17	gi|564287700|ref|YP_008873948.1|	-	1.1e-17	63.8	1.6	1.6e-17	63.2	1.6	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|564287700|ref|YP_008873948.1|	-	1e-13	50.8	2.1	2.3e-13	49.7	2.1	1.6	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Thiolase_N	PF00108.23	gi|564287701|ref|YP_008873949.1|	-	3.9e-23	82.1	2.3	1.4e-22	80.3	0.8	2.4	2	1	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564287701|ref|YP_008873949.1|	-	2.1e-07	30.6	0.4	5.7e-07	29.2	0.4	1.8	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|564287701|ref|YP_008873949.1|	-	9.9e-05	22.0	0.5	9.9e-05	22.0	0.5	2.1	3	0	0	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
Peptidase_M20	PF01546.28	gi|564287701|ref|YP_008873949.1|	-	0.055	13.2	0.6	0.15	11.7	0.1	1.9	2	1	0	2	2	2	0	Peptidase	family	M20/M25/M40
DUF3160	PF11369.8	gi|564287701|ref|YP_008873949.1|	-	0.062	11.8	0.1	0.13	10.7	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3160)
ACP_syn_III	PF08545.10	gi|564287701|ref|YP_008873949.1|	-	0.22	11.4	7.1	1.9	8.4	0.2	2.9	3	0	0	3	3	3	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Oxidored_FMN	PF00724.20	gi|564287702|ref|YP_008873950.1|	-	1.9e-63	214.8	0.0	2.2e-63	214.6	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
His_biosynth	PF00977.21	gi|564287702|ref|YP_008873950.1|	-	0.0026	17.2	0.0	0.0046	16.4	0.0	1.3	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|564287702|ref|YP_008873950.1|	-	0.08	12.1	0.0	0.14	11.4	0.0	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
SBP_bac_8	PF13416.6	gi|564287703|ref|YP_008873951.1|	-	1e-38	133.8	0.9	1.3e-38	133.5	0.9	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564287703|ref|YP_008873951.1|	-	2.9e-27	96.4	0.4	3.8e-27	96.1	0.4	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564287703|ref|YP_008873951.1|	-	0.00017	21.2	0.9	0.00041	20.1	0.9	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_6	PF13343.6	gi|564287703|ref|YP_008873951.1|	-	0.0089	15.5	0.0	0.28	10.5	0.0	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|564287703|ref|YP_008873951.1|	-	0.027	14.2	0.1	0.39	10.4	0.0	2.5	2	1	1	3	3	3	0	Bacterial	extracellular	solute-binding	protein
BamHI	PF02923.15	gi|564287703|ref|YP_008873951.1|	-	0.16	11.7	0.0	0.31	10.8	0.0	1.4	1	0	0	1	1	1	0	Restriction	endonuclease	BamHI
Adhes-Ig_like	PF09085.10	gi|564287703|ref|YP_008873951.1|	-	0.16	12.1	0.1	0.55	10.4	0.0	1.8	2	0	0	2	2	2	0	Adhesion	molecule,	immunoglobulin-like
BPD_transp_1	PF00528.22	gi|564287704|ref|YP_008873952.1|	-	3.9e-13	49.5	17.0	3.9e-13	49.5	17.0	2.3	2	1	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
CCB1	PF12046.8	gi|564287704|ref|YP_008873952.1|	-	0.42	9.9	2.5	0.98	8.7	2.5	1.6	1	0	0	1	1	1	0	Cofactor	assembly	of	complex	C	subunit	B
Baculo_11_kDa	PF06143.11	gi|564287704|ref|YP_008873952.1|	-	3.3	7.3	5.3	1	9.0	0.1	2.4	2	0	0	2	2	2	0	Baculovirus	11	kDa	family
BPD_transp_1	PF00528.22	gi|564287705|ref|YP_008873953.1|	-	1.2e-11	44.7	18.6	1.2e-11	44.7	18.6	2.1	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF347	PF03988.12	gi|564287705|ref|YP_008873953.1|	-	0.034	14.3	3.8	0.29	11.4	0.1	3.4	2	0	0	2	2	2	0	Repeat	of	Unknown	Function	(DUF347)
DDE_Tnp_IS66_C	PF13817.6	gi|564287705|ref|YP_008873953.1|	-	0.079	13.2	0.0	0.18	12.1	0.0	1.6	1	0	0	1	1	1	0	IS66	C-terminal	element
Adeno_E3_CR2	PF02439.15	gi|564287705|ref|YP_008873953.1|	-	1.7	8.5	5.3	11	5.9	0.9	2.7	2	0	0	2	2	2	0	Adenovirus	E3	region	protein	CR2
ABC_tran	PF00005.27	gi|564287706|ref|YP_008873954.1|	-	1.5e-31	109.8	0.0	2.2e-31	109.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|564287706|ref|YP_008873954.1|	-	1.7e-12	47.3	0.3	1.2e-11	44.7	0.1	2.3	2	0	0	2	2	2	1	TOBE	domain
OB_MalK	PF17912.1	gi|564287706|ref|YP_008873954.1|	-	9.6e-10	39.2	0.3	8.7e-09	36.1	0.1	2.8	3	0	0	3	3	3	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|564287706|ref|YP_008873954.1|	-	2.4e-06	27.6	0.0	0.048	13.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|564287706|ref|YP_008873954.1|	-	4.4e-06	26.9	0.1	3.5e-05	24.0	0.0	2.4	2	0	0	2	2	2	1	TOBE	domain
CysA_C_terminal	PF17850.1	gi|564287706|ref|YP_008873954.1|	-	0.00021	21.8	1.2	0.018	15.6	0.0	3.7	3	0	0	3	3	3	1	CysA	C-terminal	regulatory	domain
SMC_N	PF02463.19	gi|564287706|ref|YP_008873954.1|	-	0.0022	17.4	0.0	0.0088	15.5	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564287706|ref|YP_008873954.1|	-	0.0078	16.6	0.1	0.017	15.5	0.1	1.6	2	1	0	2	2	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564287706|ref|YP_008873954.1|	-	0.0092	16.3	0.0	0.018	15.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564287706|ref|YP_008873954.1|	-	0.028	14.4	0.0	0.043	13.7	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
Ribosomal_S17	PF00366.20	gi|564287706|ref|YP_008873954.1|	-	0.06	13.5	0.0	2.4	8.3	0.0	2.2	2	0	0	2	2	2	0	Ribosomal	protein	S17
AAA_30	PF13604.6	gi|564287706|ref|YP_008873954.1|	-	0.061	13.0	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564287706|ref|YP_008873954.1|	-	0.063	12.8	0.1	0.32	10.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|564287706|ref|YP_008873954.1|	-	0.085	13.3	0.0	0.16	12.4	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|564287706|ref|YP_008873954.1|	-	0.097	12.6	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_29	PF13555.6	gi|564287706|ref|YP_008873954.1|	-	0.19	11.5	0.0	0.41	10.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF4131	PF13567.6	gi|564287706|ref|YP_008873954.1|	-	0.2	11.3	0.0	2.7	7.6	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
GDPD	PF03009.17	gi|564287707|ref|YP_008873955.1|	-	7.2e-22	78.4	0.1	3.1e-21	76.3	0.1	2.0	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
PEP_hydrolase	PF09370.10	gi|564287707|ref|YP_008873955.1|	-	0.0077	15.5	0.0	0.016	14.4	0.0	1.5	1	0	0	1	1	1	1	Phosphoenolpyruvate	hydrolase-like
GDPD_2	PF13653.6	gi|564287707|ref|YP_008873955.1|	-	0.011	16.2	0.0	0.12	12.9	0.0	2.5	2	0	0	2	2	2	0	Glycerophosphoryl	diester	phosphodiesterase	family
Hydrolase_6	PF13344.6	gi|564287708|ref|YP_008873956.1|	-	2e-25	88.8	0.0	3.4e-25	88.1	0.0	1.4	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564287708|ref|YP_008873956.1|	-	4e-23	81.3	0.1	4.6e-22	77.9	0.0	2.4	3	0	0	3	3	3	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|564287708|ref|YP_008873956.1|	-	1.2e-14	55.1	0.1	1.6e-14	54.7	0.1	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564287708|ref|YP_008873956.1|	-	1.3e-08	35.1	0.1	9.8e-07	29.0	0.0	2.7	2	1	1	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|564287708|ref|YP_008873956.1|	-	0.0014	18.3	0.0	0.0033	17.0	0.0	1.6	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.12	gi|564287708|ref|YP_008873956.1|	-	0.026	14.3	0.2	0.23	11.1	0.0	2.0	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Peptidase_M4_C	PF02868.15	gi|564287708|ref|YP_008873956.1|	-	0.037	13.9	0.0	0.055	13.3	0.0	1.2	1	0	0	1	1	1	0	Thermolysin	metallopeptidase,	alpha-helical	domain
DUF4010	PF13194.6	gi|564287709|ref|YP_008873958.1|	-	2.4e-51	174.4	20.8	2.4e-51	174.4	20.8	2.5	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|564287709|ref|YP_008873958.1|	-	1.4e-21	77.1	10.5	1.4e-21	77.1	10.5	3.5	2	1	1	3	3	3	1	MgtC	family
Phosphonate-bd	PF12974.7	gi|564287710|ref|YP_008873959.1|	-	3e-60	203.8	0.0	4e-60	203.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.9	gi|564287710|ref|YP_008873959.1|	-	0.004	16.9	0.2	0.0077	16.0	0.2	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SBP_bac_3	PF00497.20	gi|564287710|ref|YP_008873959.1|	-	0.012	15.0	0.0	0.065	12.7	0.0	1.9	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.11	gi|564287710|ref|YP_008873959.1|	-	0.012	15.5	0.0	0.023	14.6	0.0	1.4	1	0	0	1	1	1	0	NMT1/THI5	like
ABC_tran	PF00005.27	gi|564287711|ref|YP_008873960.1|	-	6.6e-37	127.1	0.0	8.9e-37	126.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287711|ref|YP_008873960.1|	-	2.5e-06	27.5	0.3	0.043	13.6	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|564287711|ref|YP_008873960.1|	-	1.1e-05	25.8	0.1	0.00023	21.5	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|564287711|ref|YP_008873960.1|	-	4.8e-05	23.0	0.1	9.3e-05	22.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564287711|ref|YP_008873960.1|	-	7.9e-05	23.1	0.2	0.00014	22.3	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564287711|ref|YP_008873960.1|	-	0.00011	22.2	0.2	0.00049	20.1	0.1	1.9	2	0	0	2	2	2	1	RsgA	GTPase
AAA_30	PF13604.6	gi|564287711|ref|YP_008873960.1|	-	0.00051	19.8	0.0	0.00092	19.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564287711|ref|YP_008873960.1|	-	0.00061	19.3	0.2	0.3	10.5	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|564287711|ref|YP_008873960.1|	-	0.00077	19.6	0.0	0.0013	18.9	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|564287711|ref|YP_008873960.1|	-	0.0017	18.9	0.0	0.0026	18.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564287711|ref|YP_008873960.1|	-	0.013	15.5	0.0	0.094	12.6	0.0	2.0	2	0	0	2	2	2	0	Rad17	P-loop	domain
AAA_5	PF07728.14	gi|564287711|ref|YP_008873960.1|	-	0.013	15.5	0.1	0.18	11.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|564287711|ref|YP_008873960.1|	-	0.014	15.9	0.0	0.029	14.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
TniB	PF05621.11	gi|564287711|ref|YP_008873960.1|	-	0.017	14.6	0.1	4	6.8	0.0	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
MMR_HSR1	PF01926.23	gi|564287711|ref|YP_008873960.1|	-	0.017	15.2	0.0	0.032	14.3	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|564287711|ref|YP_008873960.1|	-	0.021	14.0	0.0	0.034	13.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
DUF87	PF01935.17	gi|564287711|ref|YP_008873960.1|	-	0.028	14.5	0.5	0.24	11.5	0.1	2.0	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_24	PF13479.6	gi|564287711|ref|YP_008873960.1|	-	0.034	13.9	0.0	0.05	13.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|564287711|ref|YP_008873960.1|	-	0.035	13.5	0.0	0.056	12.8	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
CbiA	PF01656.23	gi|564287711|ref|YP_008873960.1|	-	0.06	13.4	0.0	0.092	12.8	0.0	1.3	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IstB_IS21	PF01695.17	gi|564287711|ref|YP_008873960.1|	-	0.069	12.9	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
ATP_bind_1	PF03029.17	gi|564287711|ref|YP_008873960.1|	-	0.07	12.9	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.6	gi|564287711|ref|YP_008873960.1|	-	0.073	13.3	0.1	0.14	12.4	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
Cytidylate_kin	PF02224.18	gi|564287711|ref|YP_008873960.1|	-	0.078	12.7	0.0	0.32	10.7	0.1	1.8	2	0	0	2	2	2	0	Cytidylate	kinase
NACHT	PF05729.12	gi|564287711|ref|YP_008873960.1|	-	0.087	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
cobW	PF02492.19	gi|564287711|ref|YP_008873960.1|	-	0.088	12.4	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_27	PF13514.6	gi|564287711|ref|YP_008873960.1|	-	0.12	12.0	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564287711|ref|YP_008873960.1|	-	0.12	12.2	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
SbcCD_C	PF13558.6	gi|564287711|ref|YP_008873960.1|	-	0.15	12.3	0.2	1.8	8.8	0.2	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
TsaE	PF02367.17	gi|564287711|ref|YP_008873960.1|	-	0.17	11.9	0.0	0.26	11.3	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_19	PF13245.6	gi|564287711|ref|YP_008873960.1|	-	0.17	12.2	0.0	0.23	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.11	gi|564287711|ref|YP_008873960.1|	-	0.17	10.7	0.0	0.22	10.4	0.0	1.1	1	0	0	1	1	1	0	PrkA	AAA	domain
G-alpha	PF00503.20	gi|564287711|ref|YP_008873960.1|	-	0.27	10.4	0.0	0.27	10.3	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
BPD_transp_1	PF00528.22	gi|564287712|ref|YP_008873961.1|	-	2.4e-14	53.5	14.8	1.1e-13	51.4	14.8	2.0	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564287713|ref|YP_008873962.1|	-	2.2e-16	60.1	17.3	2.2e-16	60.1	17.3	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Helicase_C	PF00271.31	gi|564287714|ref|YP_008873963.1|	-	2.6e-23	82.5	0.0	6.1e-23	81.3	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|564287714|ref|YP_008873963.1|	-	5.4e-18	64.8	0.0	4.5e-16	58.5	0.0	2.5	1	1	0	1	1	1	1	SNF2	family	N-terminal	domain
ResIII	PF04851.15	gi|564287714|ref|YP_008873963.1|	-	1.1e-11	45.0	0.0	3.3e-11	43.5	0.0	1.9	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|564287714|ref|YP_008873963.1|	-	2.3e-06	27.5	0.0	7e-06	25.9	0.0	1.9	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
RapA_C	PF12137.8	gi|564287714|ref|YP_008873963.1|	-	0.00044	19.4	0.0	0.00044	19.4	0.0	2.7	2	0	0	2	2	2	1	RNA	polymerase	recycling	family	C-terminal
Helicase_C_4	PF13871.6	gi|564287714|ref|YP_008873963.1|	-	0.00098	18.9	0.0	0.06	13.0	0.0	2.4	2	0	0	2	2	2	1	C-terminal	domain	on	Strawberry	notch	homologue
AAA_34	PF13872.6	gi|564287714|ref|YP_008873963.1|	-	0.0076	15.2	0.6	0.038	12.9	0.6	2.0	1	1	0	1	1	1	1	P-loop	containing	NTP	hydrolase	pore-1
DUF2075	PF09848.9	gi|564287714|ref|YP_008873963.1|	-	0.26	10.5	0.0	0.26	10.5	0.0	2.8	4	0	0	4	4	4	0	Uncharacterized	conserved	protein	(DUF2075)
Fib_alpha	PF08702.10	gi|564287714|ref|YP_008873963.1|	-	3.2	7.9	7.5	2	8.6	3.8	2.6	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
N6_Mtase	PF02384.16	gi|564287715|ref|YP_008873964.1|	-	5e-07	29.3	0.0	0.00041	19.7	0.0	3.0	3	0	0	3	3	3	2	N-6	DNA	Methylase
Methyltransf_31	PF13847.6	gi|564287715|ref|YP_008873964.1|	-	0.007	16.2	0.0	0.025	14.4	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|564287715|ref|YP_008873964.1|	-	0.061	13.0	0.0	1.5	8.4	0.0	2.4	2	0	0	2	2	2	0	Putative	RNA	methylase	family	UPF0020
ComR_TPR	PF18710.1	gi|564287715|ref|YP_008873964.1|	-	0.1	12.1	0.1	0.67	9.5	0.3	2.0	2	0	0	2	2	2	0	ComR	tetratricopeptide
PglZ	PF08665.12	gi|564287716|ref|YP_008873965.1|	-	1.3e-08	35.2	0.0	2.6e-08	34.2	0.0	1.5	1	0	0	1	1	1	1	PglZ	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564287717|ref|YP_008873966.1|	-	0.019	15.3	0.0	0.043	14.2	0.0	1.6	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
N6_Mtase	PF02384.16	gi|564287718|ref|YP_008873967.1|	-	7.1e-09	35.4	0.0	9.7e-05	21.8	0.0	3.0	3	0	0	3	3	3	2	N-6	DNA	Methylase
UPF0020	PF01170.18	gi|564287718|ref|YP_008873967.1|	-	0.0023	17.6	0.0	3.1	7.5	0.0	3.6	4	0	0	4	4	4	2	Putative	RNA	methylase	family	UPF0020
Methyltransf_31	PF13847.6	gi|564287718|ref|YP_008873967.1|	-	0.0046	16.8	0.0	0.027	14.3	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Chloroa_b-bind	PF00504.21	gi|564287719|ref|YP_008873968.1|	-	0.038	14.5	1.0	0.041	14.4	1.0	1.0	1	0	0	1	1	1	0	Chlorophyll	A-B	binding	protein
NucS	PF01939.16	gi|564287720|ref|YP_008873969.1|	-	3.6e-05	23.2	0.0	6.5e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Endonuclease	NucS
DUF1415	PF07209.12	gi|564287721|ref|YP_008873970.1|	-	0.08	12.7	0.0	0.33	10.7	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1415)
AAA_22	PF13401.6	gi|564287721|ref|YP_008873970.1|	-	0.13	12.6	0.0	6.5	7.0	0.0	3.5	3	0	0	3	3	3	0	AAA	domain
DUF1788	PF08747.11	gi|564287722|ref|YP_008873971.1|	-	2.6e-13	50.1	0.0	3.3e-13	49.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1788)
EIIA-man	PF03610.16	gi|564287722|ref|YP_008873971.1|	-	0.019	15.2	0.0	0.029	14.6	0.0	1.3	1	0	0	1	1	1	0	PTS	system	fructose	IIA	component
ABC_tran	PF00005.27	gi|564287723|ref|YP_008873972.1|	-	0.07	13.6	0.0	0.24	11.9	0.0	1.9	1	0	0	1	1	1	0	ABC	transporter
DUF1819	PF08849.11	gi|564287724|ref|YP_008873973.1|	-	0.00012	21.9	0.0	0.00029	20.7	0.0	1.6	1	1	0	1	1	1	1	Putative	inner	membrane	protein	(DUF1819)
ParA	PF10609.9	gi|564287725|ref|YP_008873974.1|	-	3.5e-64	216.6	0.0	4.9e-64	216.1	0.0	1.2	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|564287725|ref|YP_008873974.1|	-	5.4e-13	49.1	0.0	7.7e-13	48.6	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
FeS_assembly_P	PF01883.19	gi|564287725|ref|YP_008873974.1|	-	4.1e-10	39.7	3.6	4.1e-10	39.7	3.6	2.9	3	0	0	3	3	3	1	Iron-sulfur	cluster	assembly	protein
AAA_31	PF13614.6	gi|564287725|ref|YP_008873974.1|	-	5.9e-10	39.3	0.0	6e-09	36.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
DUF2249	PF10006.9	gi|564287725|ref|YP_008873974.1|	-	7.2e-09	35.4	0.0	1.6e-08	34.3	0.0	1.6	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
VirC1	PF07015.11	gi|564287725|ref|YP_008873974.1|	-	2.8e-06	26.8	0.0	4.9e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	VirC1	protein
MipZ	PF09140.11	gi|564287725|ref|YP_008873974.1|	-	0.00018	20.9	0.5	0.0005	19.4	0.4	1.8	1	1	0	1	1	1	1	ATPase	MipZ
AAA_26	PF13500.6	gi|564287725|ref|YP_008873974.1|	-	0.003	17.4	0.0	0.21	11.4	0.2	2.5	2	0	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|564287725|ref|YP_008873974.1|	-	0.0053	16.0	1.6	0.0089	15.2	0.5	1.9	2	0	0	2	2	2	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|564287725|ref|YP_008873974.1|	-	0.0058	16.1	0.3	0.026	14.0	0.3	1.8	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
Glyco_trans_4_4	PF13579.6	gi|564287725|ref|YP_008873974.1|	-	0.0063	17.0	0.3	0.0063	17.0	0.3	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
AAA_25	PF13481.6	gi|564287725|ref|YP_008873974.1|	-	0.017	14.7	1.5	0.051	13.1	1.0	2.0	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|564287725|ref|YP_008873974.1|	-	0.029	14.0	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Asparaginase_C	PF17763.1	gi|564287725|ref|YP_008873974.1|	-	0.08	13.2	0.4	0.25	11.6	0.2	2.0	2	0	0	2	2	2	0	Glutaminase/Asparaginase	C-terminal	domain
MbeB_N	PF04837.12	gi|564287725|ref|YP_008873974.1|	-	0.14	12.5	0.0	0.44	10.9	0.0	1.8	2	0	0	2	2	2	0	MbeB-like,	N-term	conserved	region
CLP1_P	PF16575.5	gi|564287725|ref|YP_008873974.1|	-	0.25	11.1	0.0	0.51	10.1	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
HEAT_2	PF13646.6	gi|564287726|ref|YP_008873976.1|	-	7.7e-26	90.3	25.8	2.5e-14	53.4	2.3	3.1	1	1	2	3	3	3	3	HEAT	repeats
HEAT	PF02985.22	gi|564287726|ref|YP_008873976.1|	-	8.2e-13	47.4	12.0	0.0018	18.4	0.0	5.8	6	0	0	6	6	6	4	HEAT	repeat
HEAT_EZ	PF13513.6	gi|564287726|ref|YP_008873976.1|	-	0.00019	21.8	10.6	0.034	14.7	0.2	4.6	2	1	3	5	5	5	3	HEAT-like	repeat
Cnd1	PF12717.7	gi|564287726|ref|YP_008873976.1|	-	0.0045	17.1	0.0	7.7	6.5	0.0	3.3	2	1	1	3	3	3	2	non-SMC	mitotic	condensation	complex	subunit	1
DUF4042	PF13251.6	gi|564287726|ref|YP_008873976.1|	-	0.054	13.2	0.0	2.3	7.9	0.0	3.0	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4042)
DUF2019	PF09450.10	gi|564287726|ref|YP_008873976.1|	-	1	9.4	4.4	10	6.1	1.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF2019)
EB_dh	PF09459.10	gi|564287727|ref|YP_008873977.1|	-	2.4e-28	99.8	8.9	4.1e-28	99.0	8.9	1.4	1	1	0	1	1	1	1	Ethylbenzene	dehydrogenase
Nitrate_red_del	PF02613.15	gi|564287728|ref|YP_008873978.1|	-	6.8e-20	71.5	0.0	1.1e-19	70.8	0.0	1.4	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
DUF442	PF04273.13	gi|564287728|ref|YP_008873978.1|	-	0.061	13.4	1.2	0.57	10.3	0.1	2.5	3	0	0	3	3	3	0	Putative	phosphatase	(DUF442)
Luteo_P1-P2	PF08467.10	gi|564287728|ref|YP_008873978.1|	-	0.19	10.9	0.1	0.33	10.2	0.1	1.3	1	0	0	1	1	1	0	Luteovirus	RNA	polymerase	P1-P2/replicase
Fer4_11	PF13247.6	gi|564287729|ref|YP_008873979.1|	-	1.4e-32	111.8	5.5	1.4e-32	111.8	5.5	1.6	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564287729|ref|YP_008873979.1|	-	1.1e-13	51.6	0.7	4.9e-06	27.0	6.9	3.1	2	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564287729|ref|YP_008873979.1|	-	6.5e-08	32.6	17.9	0.00066	19.7	9.0	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564287729|ref|YP_008873979.1|	-	3.6e-07	29.9	23.7	0.00037	20.4	2.2	4.1	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|564287729|ref|YP_008873979.1|	-	3.4e-06	27.1	15.5	0.00064	19.8	6.5	3.0	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564287729|ref|YP_008873979.1|	-	3.9e-06	26.9	13.6	0.0029	17.7	1.7	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|564287729|ref|YP_008873979.1|	-	2.4e-05	24.2	23.0	0.012	15.7	1.4	3.8	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|564287729|ref|YP_008873979.1|	-	0.0035	17.1	1.7	0.0035	17.1	1.7	4.2	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|564287729|ref|YP_008873979.1|	-	0.0084	16.6	19.4	0.11	13.1	0.6	3.5	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564287729|ref|YP_008873979.1|	-	0.041	14.8	20.0	1.8	9.5	3.1	3.8	2	1	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
ETF_QO	PF05187.13	gi|564287729|ref|YP_008873979.1|	-	0.055	13.6	0.6	0.055	13.6	0.6	1.9	2	0	0	2	2	2	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_3	PF12798.7	gi|564287729|ref|YP_008873979.1|	-	0.1	13.6	31.2	0.55	11.3	5.9	4.2	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564287729|ref|YP_008873979.1|	-	0.26	11.9	26.7	0.74	10.5	2.0	4.3	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|564287729|ref|YP_008873979.1|	-	0.27	12.0	8.5	0.73	10.6	0.1	3.5	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|564287729|ref|YP_008873979.1|	-	0.35	11.5	12.0	0.64	10.6	0.4	3.5	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_8	PF13183.6	gi|564287729|ref|YP_008873979.1|	-	1	9.9	18.6	7.2	7.1	3.1	3.5	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
Molybdopterin	PF00384.22	gi|564287730|ref|YP_008873980.1|	-	4.7e-60	203.7	0.0	8.7e-60	202.9	0.0	1.4	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564287730|ref|YP_008873980.1|	-	3.7e-12	46.3	0.6	2.5e-11	43.6	0.0	2.5	3	0	0	3	3	3	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|564287730|ref|YP_008873980.1|	-	0.0009	19.2	0.4	0.0034	17.3	0.4	2.1	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.9	gi|564287730|ref|YP_008873980.1|	-	0.0077	16.0	3.2	0.0077	16.0	3.2	1.6	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CDC48_N	PF02359.18	gi|564287730|ref|YP_008873980.1|	-	0.04	14.1	0.0	0.12	12.6	0.0	1.7	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
UCR_Fe-S_N	PF10399.9	gi|564287730|ref|YP_008873980.1|	-	0.11	11.9	0.6	0.2	11.0	0.6	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Usp	PF00582.26	gi|564287731|ref|YP_008873981.1|	-	2.7e-08	34.4	0.2	3.8e-08	33.9	0.2	1.3	1	0	0	1	1	1	1	Universal	stress	protein	family
Secretin_N	PF03958.17	gi|564287731|ref|YP_008873981.1|	-	0.021	15.2	0.2	0.038	14.4	0.2	1.4	1	0	0	1	1	1	0	Bacterial	type	II/III	secretion	system	short	domain
FAD_binding_3	PF01494.19	gi|564287732|ref|YP_008873982.1|	-	2.4e-11	43.5	6.2	3.3e-09	36.5	6.2	2.9	1	1	0	1	1	1	1	FAD	binding	domain
Tubulin	PF00091.25	gi|564287733|ref|YP_008873983.1|	-	2.1e-27	96.6	0.0	3.1e-27	96.1	0.0	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|564287733|ref|YP_008873983.1|	-	5.8e-07	29.0	1.9	0.00058	19.1	0.3	2.6	1	1	2	3	3	3	2	Tubulin	like
FmdA_AmdA	PF03069.15	gi|564287734|ref|YP_008873984.1|	-	5.3e-31	107.8	4.6	5.3e-16	58.5	1.1	2.8	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
TRAM	PF01938.20	gi|564287734|ref|YP_008873984.1|	-	0.15	12.1	1.2	0.5	10.4	0.3	2.2	2	0	0	2	2	2	0	TRAM	domain
5_nucleotid_C	PF02872.18	gi|564287735|ref|YP_008873985.1|	-	6.2e-27	94.7	0.0	1.6e-26	93.4	0.0	1.6	2	0	0	2	2	2	1	5'-nucleotidase,	C-terminal	domain
Metallophos_2	PF12850.7	gi|564287735|ref|YP_008873985.1|	-	0.00053	20.2	1.1	0.0021	18.3	1.1	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564287735|ref|YP_008873985.1|	-	0.0029	18.1	0.3	0.0062	17.0	0.3	1.6	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|564287735|ref|YP_008873985.1|	-	0.14	11.4	0.1	0.36	10.1	0.1	1.6	2	0	0	2	2	2	0	Metallophosphoesterase,	calcineurin	superfamily
ABC_tran	PF00005.27	gi|564287737|ref|YP_008873987.1|	-	2.3e-57	193.3	0.0	1.9e-28	99.7	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|564287737|ref|YP_008873987.1|	-	3.8e-19	69.6	4.9	0.00028	20.8	0.0	4.1	3	1	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287737|ref|YP_008873987.1|	-	2.2e-15	56.7	0.2	6.8e-08	32.2	0.1	3.9	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564287737|ref|YP_008873987.1|	-	7e-08	32.1	0.3	0.013	15.2	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.6	gi|564287737|ref|YP_008873987.1|	-	6.9e-07	29.6	2.9	0.0022	18.2	0.0	3.2	2	2	1	3	3	3	2	AAA	domain
AAA_23	PF13476.6	gi|564287737|ref|YP_008873987.1|	-	1.8e-06	28.6	0.0	0.065	13.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|564287737|ref|YP_008873987.1|	-	3.9e-06	26.8	0.1	0.35	10.5	0.0	3.1	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_13	PF13166.6	gi|564287737|ref|YP_008873987.1|	-	1.2e-05	24.2	0.0	0.17	10.5	0.0	3.0	3	0	0	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|564287737|ref|YP_008873987.1|	-	1.4e-05	25.5	0.9	0.16	12.3	0.6	2.9	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564287737|ref|YP_008873987.1|	-	5.6e-05	23.4	3.5	0.19	12.0	0.3	3.9	2	2	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|564287737|ref|YP_008873987.1|	-	8.5e-05	22.4	0.7	0.42	10.3	0.2	2.9	2	2	0	2	2	2	2	AAA	domain
PduV-EutP	PF10662.9	gi|564287737|ref|YP_008873987.1|	-	0.00013	21.8	0.1	0.61	9.8	0.0	2.3	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
RsgA_GTPase	PF03193.16	gi|564287737|ref|YP_008873987.1|	-	0.0003	20.8	0.5	0.019	14.9	0.1	2.4	2	0	0	2	2	2	1	RsgA	GTPase
AAA_24	PF13479.6	gi|564287737|ref|YP_008873987.1|	-	0.00034	20.4	0.0	0.31	10.7	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|564287737|ref|YP_008873987.1|	-	0.0004	20.3	0.5	1.1	9.1	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
DUF3584	PF12128.8	gi|564287737|ref|YP_008873987.1|	-	0.00041	18.1	0.2	0.14	9.7	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3584)
ATPase	PF06745.13	gi|564287737|ref|YP_008873987.1|	-	0.00053	19.4	0.1	0.33	10.3	0.0	2.4	2	0	0	2	2	2	2	KaiC
RNA_helicase	PF00910.22	gi|564287737|ref|YP_008873987.1|	-	0.00063	20.1	0.0	0.49	10.8	0.0	3.0	3	0	0	3	3	2	1	RNA	helicase
ATP_bind_1	PF03029.17	gi|564287737|ref|YP_008873987.1|	-	0.0011	18.9	0.8	0.13	12.0	0.1	3.0	3	0	0	3	3	3	1	Conserved	hypothetical	ATP	binding	protein
Zeta_toxin	PF06414.12	gi|564287737|ref|YP_008873987.1|	-	0.0012	18.2	0.0	0.052	12.8	0.0	2.6	2	0	0	2	2	2	1	Zeta	toxin
MMR_HSR1	PF01926.23	gi|564287737|ref|YP_008873987.1|	-	0.0012	18.9	0.2	0.25	11.4	0.0	3.1	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
Mg_chelatase	PF01078.21	gi|564287737|ref|YP_008873987.1|	-	0.0012	18.2	0.0	0.31	10.4	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Roc	PF08477.13	gi|564287737|ref|YP_008873987.1|	-	0.0013	19.0	0.2	0.65	10.2	0.0	2.4	2	0	0	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NB-ARC	PF00931.22	gi|564287737|ref|YP_008873987.1|	-	0.0014	17.9	0.2	0.7	9.0	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
T2SSE	PF00437.20	gi|564287737|ref|YP_008873987.1|	-	0.0029	16.7	0.7	1.9	7.4	0.0	3.5	4	0	0	4	4	4	1	Type	II/IV	secretion	system	protein
AAA	PF00004.29	gi|564287737|ref|YP_008873987.1|	-	0.0035	17.8	0.0	1.4	9.3	0.0	3.4	4	0	0	4	4	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|564287737|ref|YP_008873987.1|	-	0.0045	17.2	0.1	1.1	9.4	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
TsaE	PF02367.17	gi|564287737|ref|YP_008873987.1|	-	0.0051	16.8	0.1	5.1	7.1	0.0	2.4	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SbcCD_C	PF13558.6	gi|564287737|ref|YP_008873987.1|	-	0.0072	16.5	0.1	3.8	7.8	0.0	3.1	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
DLIC	PF05783.11	gi|564287737|ref|YP_008873987.1|	-	0.0072	15.2	0.1	0.81	8.4	0.1	2.1	2	0	0	2	2	2	1	Dynein	light	intermediate	chain	(DLIC)
NTPase_1	PF03266.15	gi|564287737|ref|YP_008873987.1|	-	0.0093	15.9	2.4	0.6	10.0	0.0	3.1	4	0	0	4	4	3	1	NTPase
AAA_18	PF13238.6	gi|564287737|ref|YP_008873987.1|	-	0.015	15.9	0.0	3.2	8.3	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|564287737|ref|YP_008873987.1|	-	0.025	14.6	0.0	5.7	7.0	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|564287737|ref|YP_008873987.1|	-	0.033	13.8	0.0	2.6	7.6	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|564287737|ref|YP_008873987.1|	-	0.034	13.7	0.2	4.3	6.8	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
AAA_17	PF13207.6	gi|564287737|ref|YP_008873987.1|	-	0.042	14.3	0.2	2.2	8.7	0.1	2.8	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|564287737|ref|YP_008873987.1|	-	0.043	13.4	0.2	11	5.6	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
ATPase_2	PF01637.18	gi|564287737|ref|YP_008873987.1|	-	0.046	13.6	0.0	12	5.7	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
G-alpha	PF00503.20	gi|564287737|ref|YP_008873987.1|	-	0.048	12.8	0.0	5	6.2	0.0	2.2	2	0	0	2	2	2	0	G-protein	alpha	subunit
MukB	PF04310.12	gi|564287737|ref|YP_008873987.1|	-	0.065	13.0	0.4	1.9	8.2	0.1	2.2	2	0	0	2	2	2	0	MukB	N-terminal
Ras	PF00071.22	gi|564287737|ref|YP_008873987.1|	-	0.08	12.5	0.4	4	7.0	0.0	3.0	3	0	0	3	3	3	0	Ras	family
cobW	PF02492.19	gi|564287737|ref|YP_008873987.1|	-	0.088	12.4	1.0	3.9	7.0	0.2	2.5	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_19	PF13245.6	gi|564287737|ref|YP_008873987.1|	-	0.09	13.1	0.2	1.2	9.5	0.1	2.5	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|564287737|ref|YP_008873987.1|	-	0.09	12.5	0.0	31	4.2	0.0	3.2	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|564287737|ref|YP_008873987.1|	-	0.097	12.7	0.1	5.6	7.0	0.0	2.6	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Ploopntkinase3	PF18751.1	gi|564287737|ref|YP_008873987.1|	-	0.11	12.4	0.0	1.1	9.2	0.0	2.2	2	0	0	2	2	2	0	P-loop	Nucleotide	Kinase3
AAA_25	PF13481.6	gi|564287737|ref|YP_008873987.1|	-	0.12	12.0	6.1	4	7.0	0.4	3.7	3	1	0	3	3	3	0	AAA	domain
PFK	PF00365.20	gi|564287737|ref|YP_008873987.1|	-	0.13	11.5	0.0	0.25	10.6	0.0	1.4	1	0	0	1	1	1	0	Phosphofructokinase
Pox_A32	PF04665.12	gi|564287737|ref|YP_008873987.1|	-	0.16	11.4	0.1	1.8	7.9	0.0	2.1	2	0	0	2	2	2	0	Poxvirus	A32	protein
CbiQ	PF02361.16	gi|564287738|ref|YP_008873988.1|	-	1.9e-15	57.1	14.5	8e-15	55.1	14.5	1.8	1	1	0	1	1	1	1	Cobalt	transport	protein
2-ph_phosp	PF04029.14	gi|564287739|ref|YP_008873989.1|	-	5.3e-22	78.1	0.0	7.3e-22	77.7	0.0	1.1	1	0	0	1	1	1	1	2-phosphosulpholactate	phosphatase
PHP	PF02811.19	gi|564287740|ref|YP_008873990.1|	-	1.8e-06	28.4	0.1	2.2e-06	28.1	0.1	1.2	1	0	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|564287740|ref|YP_008873990.1|	-	0.041	13.6	0.0	0.12	12.1	0.0	1.9	1	0	0	1	1	1	0	PHP-associated
DUF3592	PF12158.8	gi|564287741|ref|YP_008873991.1|	-	1.2e-16	61.1	0.2	1.5e-16	60.8	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3592)
DUF5602	PF18197.1	gi|564287742|ref|YP_008873992.1|	-	0.02	15.4	0.0	0.74	10.4	0.0	3.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF5602)
AAA_16	PF13191.6	gi|564287743|ref|YP_008873993.1|	-	8.2e-05	23.0	2.8	0.13	12.7	0.6	4.0	3	1	0	3	3	3	2	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564287743|ref|YP_008873993.1|	-	0.051	13.7	0.0	10	6.2	0.0	3.3	2	0	0	2	2	2	0	AAA	domain
4HBT	PF03061.22	gi|564287744|ref|YP_008873994.1|	-	0.12	12.7	0.0	0.16	12.3	0.0	1.2	1	0	0	1	1	1	0	Thioesterase	superfamily
UPF0261	PF06792.11	gi|564287746|ref|YP_008873996.1|	-	5e-168	559.2	6.0	5.6e-168	559.1	6.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0261)
HisG	PF01634.18	gi|564287746|ref|YP_008873996.1|	-	0.00029	20.9	0.1	0.00076	19.5	0.1	1.7	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
SpoVS	PF04232.12	gi|564287746|ref|YP_008873996.1|	-	0.093	12.5	0.8	0.8	9.5	0.0	2.6	3	0	0	3	3	3	0	Stage	V	sporulation	protein	S	(SpoVS)
Cupin_2	PF07883.11	gi|564287747|ref|YP_008873997.1|	-	2.3e-19	68.9	0.8	4e-19	68.1	0.8	1.4	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|564287747|ref|YP_008873997.1|	-	8.5e-08	31.9	0.0	1.2e-07	31.5	0.0	1.1	1	0	0	1	1	1	1	Cupin
Cupin_3	PF05899.12	gi|564287747|ref|YP_008873997.1|	-	2.2e-07	30.4	0.4	3.7e-07	29.8	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|564287747|ref|YP_008873997.1|	-	8.8e-07	28.9	0.0	1.1e-06	28.6	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.8	gi|564287747|ref|YP_008873997.1|	-	1.4e-05	25.2	0.0	2.1e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_7	PF12973.7	gi|564287747|ref|YP_008873997.1|	-	0.00023	21.0	0.1	0.00034	20.5	0.1	1.2	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
MannoseP_isomer	PF01050.18	gi|564287747|ref|YP_008873997.1|	-	0.00035	20.5	0.0	0.00043	20.2	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
ARD	PF03079.14	gi|564287747|ref|YP_008873997.1|	-	0.028	14.6	0.2	0.041	14.1	0.2	1.2	1	0	0	1	1	1	0	ARD/ARD'	family
DMSP_lyase	PF16867.5	gi|564287747|ref|YP_008873997.1|	-	0.073	12.7	0.0	0.093	12.4	0.0	1.1	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
NapD	PF03927.13	gi|564287747|ref|YP_008873997.1|	-	0.16	12.0	0.2	0.31	11.1	0.0	1.6	2	0	0	2	2	2	0	NapD	protein
PEP_hydrolase	PF09370.10	gi|564287748|ref|YP_008873998.1|	-	2.9e-129	430.0	0.2	3.3e-129	429.8	0.2	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	hydrolase-like
NMO	PF03060.15	gi|564287748|ref|YP_008873998.1|	-	0.016	14.6	0.1	0.026	13.9	0.1	1.3	1	0	0	1	1	1	0	Nitronate	monooxygenase
DUF3287	PF11690.8	gi|564287828|ref|YP_008873999.1|	-	0.11	12.2	0.0	0.14	11.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3287)
Cyt_bd_oxida_I	PF01654.17	gi|564287749|ref|YP_008874000.1|	-	2.7e-139	464.4	20.7	3.2e-139	464.2	20.7	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	I
Cyt_bd_oxida_II	PF02322.15	gi|564287750|ref|YP_008874001.1|	-	8.5e-64	215.8	28.1	9.6e-64	215.6	28.1	1.0	1	0	0	1	1	1	1	Cytochrome	bd	terminal	oxidase	subunit	II
DUF2569	PF10754.9	gi|564287750|ref|YP_008874001.1|	-	8	6.9	9.8	0.3	11.5	1.4	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2569)
E1-E2_ATPase	PF00122.20	gi|564287751|ref|YP_008874002.1|	-	4.1e-43	147.0	0.2	4.1e-43	147.0	0.2	2.4	2	1	2	4	4	4	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564287751|ref|YP_008874002.1|	-	5.7e-31	108.4	2.9	1.2e-30	107.4	2.9	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564287751|ref|YP_008874002.1|	-	1.4e-08	35.1	0.0	6.8e-08	32.9	0.0	2.2	2	0	0	2	2	2	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564287751|ref|YP_008874002.1|	-	2.3e-05	24.2	0.1	3.6e-05	23.6	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|564287751|ref|YP_008874002.1|	-	0.0092	16.7	1.1	0.022	15.5	0.3	1.9	2	0	0	2	2	2	1	Putative	metal-binding	domain	of	cation	transport	ATPase
DsbD_2	PF13386.6	gi|574087273|ref|YP_008874003.2|	-	1.4e-31	110.0	18.0	1.7e-31	109.7	18.0	1.1	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Chlorosome_CsmC	PF11098.8	gi|574087273|ref|YP_008874003.2|	-	0.02	14.9	0.9	1.5	8.8	0.1	2.4	1	1	1	2	2	2	0	Chlorosome	envelope	protein	C
DDE_Tnp_IS240	PF13610.6	gi|564287753|ref|YP_008874004.1|	-	3.8e-18	66.1	0.1	5.3e-18	65.6	0.1	1.2	1	0	0	1	1	1	1	DDE	domain
rve_3	PF13683.6	gi|564287753|ref|YP_008874004.1|	-	2.5e-06	27.2	1.1	4.5e-06	26.3	1.1	1.5	1	0	0	1	1	1	1	Integrase	core	domain
DUF2384	PF09722.10	gi|564287753|ref|YP_008874004.1|	-	0.0096	15.9	0.6	0.15	12.1	0.0	2.5	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2384)
Cas_CXXC_CXXC	PF09706.10	gi|564287829|ref|YP_008874005.1|	-	0.086	13.1	1.2	0.61	10.4	0.2	2.2	2	0	0	2	2	2	0	CRISPR-associated	protein	(Cas_CXXC_CXXC)
FYVE	PF01363.21	gi|564287829|ref|YP_008874005.1|	-	0.2	11.8	5.8	2.4	8.4	0.4	2.6	1	1	1	2	2	2	0	FYVE	zinc	finger
E1-E2_ATPase	PF00122.20	gi|564287754|ref|YP_008874008.1|	-	3e-50	170.2	0.7	3e-50	170.2	0.7	2.2	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|564287754|ref|YP_008874008.1|	-	1.2e-38	132.6	3.9	2.8e-38	131.5	3.9	1.6	1	0	0	1	1	1	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|564287754|ref|YP_008874008.1|	-	1.4e-21	77.7	0.2	4.2e-21	76.2	0.2	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.26	gi|564287754|ref|YP_008874008.1|	-	1.9e-21	75.5	0.0	8.2e-21	73.5	0.0	2.2	2	0	0	2	2	2	1	Cation	transporter/ATPase,	N-terminus
Cation_ATPase	PF13246.6	gi|564287754|ref|YP_008874008.1|	-	1.8e-16	60.0	0.0	9.3e-16	57.7	0.0	2.2	3	0	0	3	3	3	1	Cation	transport	ATPase	(P-type)
HAD	PF12710.7	gi|564287754|ref|YP_008874008.1|	-	0.00038	20.9	0.0	0.00096	19.6	0.0	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|564287754|ref|YP_008874008.1|	-	0.00056	19.7	2.6	0.026	14.3	0.9	2.3	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Phage_holin_2_3	PF16080.5	gi|564287754|ref|YP_008874008.1|	-	0.18	11.6	0.2	0.74	9.6	0.2	2.0	1	0	0	1	1	1	0	Bacteriophage	holin	family	HP1
DUF4395	PF14340.6	gi|564287754|ref|YP_008874008.1|	-	6.9	7.0	11.3	0.36	11.2	1.3	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4395)
Pyridox_ox_2	PF12900.7	gi|564287755|ref|YP_008874009.1|	-	5.4e-18	65.3	0.0	6.1e-18	65.2	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564287755|ref|YP_008874009.1|	-	2.8e-05	24.2	0.0	3.8e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
CBS	PF00571.28	gi|564287756|ref|YP_008874010.1|	-	9.3e-22	77.2	2.4	1e-09	38.7	0.4	2.6	2	0	0	2	2	2	2	CBS	domain
MaoC_dehydratas	PF01575.19	gi|564287756|ref|YP_008874010.1|	-	1.8e-17	63.0	0.0	4.8e-17	61.7	0.0	1.7	2	0	0	2	2	2	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564287756|ref|YP_008874010.1|	-	2.3e-06	27.8	0.0	8.3e-06	26.0	0.0	1.9	2	0	0	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
TruB_C	PF09142.11	gi|564287756|ref|YP_008874010.1|	-	0.093	12.5	0.1	0.82	9.5	0.0	2.4	2	0	0	2	2	2	0	tRNA	Pseudouridine	synthase	II,	C	terminal
Cnd1	PF12717.7	gi|564287832|ref|YP_008874011.1|	-	6.9e-20	71.7	0.0	2.5e-06	27.6	0.0	3.4	2	1	1	3	3	3	3	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_2	PF13646.6	gi|564287832|ref|YP_008874011.1|	-	1.3e-18	67.2	26.8	3.7e-06	27.2	1.1	5.0	2	2	3	5	5	5	5	HEAT	repeats
HEAT	PF02985.22	gi|564287832|ref|YP_008874011.1|	-	2.2e-17	61.6	13.3	0.00088	19.3	0.2	7.4	7	0	0	7	7	7	4	HEAT	repeat
Adaptin_N	PF01602.20	gi|564287832|ref|YP_008874011.1|	-	1.2e-13	50.5	0.0	0.00092	17.9	0.0	3.3	2	1	1	3	3	3	3	Adaptin	N	terminal	region
HEAT_EZ	PF13513.6	gi|564287832|ref|YP_008874011.1|	-	1.3e-11	44.7	18.3	0.0034	17.8	0.4	5.9	6	1	1	7	7	6	4	HEAT-like	repeat
HEAT_PBS	PF03130.16	gi|564287832|ref|YP_008874011.1|	-	0.002	18.6	15.9	10	7.2	0.2	8.8	10	1	0	10	10	9	1	PBS	lyase	HEAT-like	repeat
HEAT_UF	PF18817.1	gi|564287832|ref|YP_008874011.1|	-	0.014	15.6	0.0	0.45	10.8	0.0	2.8	2	1	1	3	3	3	0	Repeat	of	uncharacterized	protein	PH0542
API5	PF05918.11	gi|564287832|ref|YP_008874011.1|	-	0.035	12.9	0.5	29	3.3	0.0	3.3	2	1	0	3	3	3	0	Apoptosis	inhibitory	protein	5	(API5)
DNA_alkylation	PF08713.11	gi|564287832|ref|YP_008874011.1|	-	0.06	13.1	0.2	21	4.7	0.0	3.5	3	2	0	3	3	3	0	DNA	alkylation	repair	enzyme
Gp49	PF05973.14	gi|564287832|ref|YP_008874011.1|	-	0.065	13.4	0.0	46	4.3	0.0	3.5	3	1	0	3	3	3	0	Phage	derived	protein	Gp49-like	(DUF891)
Vac14_Fab1_bd	PF12755.7	gi|564287832|ref|YP_008874011.1|	-	0.1	13.2	0.0	17	6.1	0.0	3.3	3	1	0	3	3	3	0	Vacuolar	14	Fab1-binding	region
Arm	PF00514.23	gi|564287832|ref|YP_008874011.1|	-	0.14	12.3	0.5	3	8.0	0.0	3.4	3	0	0	3	3	3	0	Armadillo/beta-catenin-like	repeat
HTH_AsnC-type	PF13404.6	gi|564287757|ref|YP_008874012.1|	-	1.5e-13	50.3	1.4	2.6e-13	49.5	1.4	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287757|ref|YP_008874012.1|	-	3.6e-11	42.4	0.4	6.4e-11	41.6	0.4	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|564287757|ref|YP_008874012.1|	-	0.00013	21.9	0.3	0.00037	20.4	0.1	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|564287757|ref|YP_008874012.1|	-	0.00014	21.8	0.0	0.00028	20.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|564287757|ref|YP_008874012.1|	-	0.0002	21.8	0.1	0.00048	20.6	0.1	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.22	gi|564287757|ref|YP_008874012.1|	-	0.00026	20.8	0.0	0.00047	20.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.12	gi|564287757|ref|YP_008874012.1|	-	0.0017	18.1	0.5	0.0034	17.1	0.2	1.7	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564287757|ref|YP_008874012.1|	-	0.003	17.4	0.0	0.0081	16.0	0.0	1.7	2	0	0	2	2	2	1	MarR	family
LexA_DNA_bind	PF01726.16	gi|564287757|ref|YP_008874012.1|	-	0.0031	17.3	0.0	0.016	14.9	0.0	2.1	2	0	0	2	2	2	1	LexA	DNA	binding	domain
TOBE_2	PF08402.10	gi|564287757|ref|YP_008874012.1|	-	0.019	15.1	0.6	0.1	12.8	0.1	2.0	2	0	0	2	2	2	0	TOBE	domain
HTH_23	PF13384.6	gi|564287757|ref|YP_008874012.1|	-	0.036	13.9	0.1	0.07	12.9	0.1	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
TrmB	PF01978.19	gi|564287757|ref|YP_008874012.1|	-	0.047	13.6	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_CodY	PF08222.11	gi|564287757|ref|YP_008874012.1|	-	0.058	13.0	0.0	0.16	11.6	0.0	1.7	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564287757|ref|YP_008874012.1|	-	0.066	13.2	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564287757|ref|YP_008874012.1|	-	0.086	12.4	0.1	0.22	11.1	0.0	1.7	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_28	PF13518.6	gi|564287757|ref|YP_008874012.1|	-	0.094	12.9	0.0	1.1	9.5	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|564287758|ref|YP_008874013.1|	-	1.2e-08	34.8	0.1	1.5e-08	34.4	0.1	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|564287758|ref|YP_008874013.1|	-	0.016	15.0	0.0	0.021	14.6	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
Hydrolase	PF00702.26	gi|564287759|ref|YP_008874014.1|	-	6.6e-23	82.1	2.3	9e-23	81.7	2.3	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564287759|ref|YP_008874014.1|	-	5.1e-06	27.0	0.0	8e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|564287759|ref|YP_008874014.1|	-	0.00016	21.6	0.2	0.01	15.6	0.4	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
DNA_photolyase	PF00875.18	gi|564287759|ref|YP_008874014.1|	-	0.05	13.6	0.1	0.071	13.1	0.1	1.3	1	0	0	1	1	1	0	DNA	photolyase
CE2_N	PF17996.1	gi|564287761|ref|YP_008874016.1|	-	0.16	12.0	0.0	0.21	11.6	0.0	1.1	1	0	0	1	1	1	0	Carbohydrate	esterase	2	N-terminal
UPF0175	PF03683.13	gi|564287762|ref|YP_008874017.1|	-	8.8e-23	79.8	0.8	9.8e-23	79.7	0.8	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
zf-H3C2	PF16721.5	gi|564287762|ref|YP_008874017.1|	-	0.2	12.0	0.0	0.23	11.9	0.0	1.1	1	0	0	1	1	1	0	Zinc-finger	like,	probable	DNA-binding
DUF3368	PF11848.8	gi|564287763|ref|YP_008874018.1|	-	1.5e-12	47.1	0.0	2.6e-12	46.3	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3368)
HypA	PF01155.19	gi|564287764|ref|YP_008874019.1|	-	0.0051	16.8	5.4	0.77	9.8	0.1	2.3	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|564287764|ref|YP_008874019.1|	-	0.016	15.2	1.9	0.016	15.2	1.9	3.0	2	1	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|564287764|ref|YP_008874019.1|	-	0.024	15.4	5.4	0.07	13.9	0.3	2.5	2	1	0	2	2	2	0	zinc-ribbon	family
Baculo_LEF5_C	PF11792.8	gi|564287764|ref|YP_008874019.1|	-	0.088	12.5	0.0	0.088	12.5	0.0	2.8	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
DUF2116	PF09889.9	gi|564287764|ref|YP_008874019.1|	-	0.11	12.6	0.6	0.23	11.5	0.6	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
RNA_POL_M_15KD	PF02150.16	gi|564287764|ref|YP_008874019.1|	-	0.14	12.1	3.8	16	5.5	0.0	3.6	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Lar_restr_allev	PF14354.6	gi|564287764|ref|YP_008874019.1|	-	0.9	10.0	6.4	7.9	6.9	0.2	3.4	3	1	1	4	4	4	0	Restriction	alleviation	protein	Lar
Zn_Tnp_IS1595	PF12760.7	gi|564287764|ref|YP_008874019.1|	-	2.5	8.2	12.8	1.5	8.8	2.1	3.3	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|564287764|ref|YP_008874019.1|	-	4.8	6.9	10.2	2.7	7.6	0.8	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-C2HC5	PF06221.13	gi|564287764|ref|YP_008874019.1|	-	5	7.2	6.7	0.73	9.9	0.1	2.6	2	1	1	3	3	3	0	Putative	zinc	finger	motif,	C2HC5-type
ABC_tran	PF00005.27	gi|574087274|ref|YP_008997851.1|	-	2.9e-31	108.8	0.0	4.3e-31	108.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|574087274|ref|YP_008997851.1|	-	1.2e-18	67.3	0.3	2.5e-18	66.3	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|574087274|ref|YP_008997851.1|	-	2e-06	27.9	0.0	0.00066	19.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|574087274|ref|YP_008997851.1|	-	0.00012	21.6	0.0	0.00018	21.0	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|574087274|ref|YP_008997851.1|	-	0.0002	21.6	0.1	0.0014	19.0	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|574087274|ref|YP_008997851.1|	-	0.00022	21.7	1.5	0.0005	20.5	1.5	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Mg_chelatase	PF01078.21	gi|574087274|ref|YP_008997851.1|	-	0.0015	17.9	0.0	0.021	14.2	0.0	2.1	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
RsgA_GTPase	PF03193.16	gi|574087274|ref|YP_008997851.1|	-	0.0019	18.1	0.1	0.0035	17.2	0.1	1.4	1	0	0	1	1	1	1	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|574087274|ref|YP_008997851.1|	-	0.0035	16.7	0.1	0.0071	15.6	0.1	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA	PF00004.29	gi|574087274|ref|YP_008997851.1|	-	0.007	16.8	0.0	0.07	13.6	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|574087274|ref|YP_008997851.1|	-	0.012	15.6	0.2	0.33	11.0	0.1	2.3	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.25	gi|574087274|ref|YP_008997851.1|	-	0.028	14.1	0.0	0.049	13.3	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Sigma54_activat	PF00158.26	gi|574087274|ref|YP_008997851.1|	-	0.045	13.5	0.0	0.45	10.2	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
SbcCD_C	PF13558.6	gi|574087274|ref|YP_008997851.1|	-	0.059	13.6	0.1	0.15	12.3	0.1	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_29	PF13555.6	gi|574087274|ref|YP_008997851.1|	-	0.076	12.8	0.1	0.13	12.0	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RNA_helicase	PF00910.22	gi|574087274|ref|YP_008997851.1|	-	0.11	12.9	0.0	0.2	12.1	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|574087274|ref|YP_008997851.1|	-	0.13	12.1	0.6	0.98	9.3	0.1	2.2	2	0	0	2	2	2	0	NTPase
NB-ARC	PF00931.22	gi|574087274|ref|YP_008997851.1|	-	0.16	11.2	0.1	0.26	10.4	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
IstB_IS21	PF01695.17	gi|574087274|ref|YP_008997851.1|	-	0.17	11.6	0.1	0.62	9.8	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|574087274|ref|YP_008997851.1|	-	0.17	11.8	0.1	0.35	10.8	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
MMR_HSR1	PF01926.23	gi|574087274|ref|YP_008997851.1|	-	0.19	11.8	0.0	0.36	10.9	0.0	1.4	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_13	PF13166.6	gi|574087274|ref|YP_008997851.1|	-	0.2	10.3	0.3	0.69	8.5	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|574087275|ref|YP_008997852.1|	-	7.2e-27	94.6	0.0	1.2e-26	93.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|574087275|ref|YP_008997852.1|	-	3.6e-16	59.4	0.3	6.5e-16	58.6	0.3	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_22	PF13401.6	gi|574087275|ref|YP_008997852.1|	-	0.00012	22.4	0.5	0.018	15.3	0.5	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|574087275|ref|YP_008997852.1|	-	0.0049	17.3	1.3	0.013	15.9	1.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|574087275|ref|YP_008997852.1|	-	0.0072	16.2	4.7	0.022	14.5	1.3	2.7	1	1	1	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|574087275|ref|YP_008997852.1|	-	0.0078	15.7	0.1	0.26	10.7	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF87	PF01935.17	gi|574087275|ref|YP_008997852.1|	-	0.011	15.8	0.2	0.028	14.5	0.2	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_7	PF12775.7	gi|574087275|ref|YP_008997852.1|	-	0.069	12.6	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ATP-synt_ab	PF00006.25	gi|574087275|ref|YP_008997852.1|	-	0.094	12.4	0.0	0.18	11.5	0.0	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_29	PF13555.6	gi|574087275|ref|YP_008997852.1|	-	0.14	11.9	0.2	0.28	10.9	0.2	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
BPD_transp_1	PF00528.22	gi|564287765|ref|YP_008874020.1|	-	3.1e-31	108.5	9.6	3.1e-31	108.5	9.6	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|564287765|ref|YP_008874020.1|	-	0.0002	21.2	0.0	0.0002	21.2	0.0	3.5	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|564287766|ref|YP_008874021.1|	-	1.7e-40	138.8	7.6	1.7e-40	138.8	7.6	1.8	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
Renin_r	PF07850.14	gi|564287766|ref|YP_008874021.1|	-	0.32	11.6	0.2	0.32	11.6	0.2	2.2	3	0	0	3	3	3	0	Renin	receptor-like	protein
SBP_bac_5	PF00496.22	gi|564287767|ref|YP_008874022.1|	-	4.2e-82	276.1	0.0	5.7e-82	275.7	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
SBP_bac_5	PF00496.22	gi|564287768|ref|YP_008874023.1|	-	4.1e-66	223.5	0.5	5.3e-66	223.1	0.5	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
GSIII_N	PF12437.8	gi|564287768|ref|YP_008874023.1|	-	0.0081	15.8	0.1	0.024	14.3	0.1	1.7	2	0	0	2	2	2	1	Glutamine	synthetase	type	III	N	terminal
TAT_signal	PF10518.9	gi|564287768|ref|YP_008874023.1|	-	0.019	14.8	1.4	0.037	13.9	1.4	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
AAA_22	PF13401.6	gi|564287834|ref|YP_008874026.1|	-	1.2e-14	54.7	0.2	2.6e-14	53.7	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.6	gi|564287834|ref|YP_008874026.1|	-	1.6e-11	44.9	0.3	3.9e-11	43.6	0.1	1.8	2	1	0	2	2	2	1	AAA	ATPase	domain
TniB	PF05621.11	gi|564287834|ref|YP_008874026.1|	-	4.3e-08	32.8	0.0	7.1e-08	32.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA	PF00004.29	gi|564287834|ref|YP_008874026.1|	-	1.2e-06	29.0	0.2	5.5e-06	26.8	0.2	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|564287834|ref|YP_008874026.1|	-	1.8e-05	24.0	0.0	5.2e-05	22.5	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|564287834|ref|YP_008874026.1|	-	2.1e-05	24.3	0.0	0.00023	20.9	0.0	2.1	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Sigma54_activ_2	PF14532.6	gi|564287834|ref|YP_008874026.1|	-	9.9e-05	22.5	0.0	0.0046	17.1	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|564287834|ref|YP_008874026.1|	-	0.0013	18.7	0.0	0.0019	18.1	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_5	PF07728.14	gi|564287834|ref|YP_008874026.1|	-	0.0016	18.5	0.3	0.0075	16.3	0.3	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
KAP_NTPase	PF07693.14	gi|564287834|ref|YP_008874026.1|	-	0.002	17.4	0.1	0.021	14.1	0.0	1.8	1	1	1	2	2	2	1	KAP	family	P-loop	domain
AAA_2	PF07724.14	gi|564287834|ref|YP_008874026.1|	-	0.0037	17.4	0.6	0.0056	16.8	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
ATPase_2	PF01637.18	gi|564287834|ref|YP_008874026.1|	-	0.0038	17.2	0.0	0.0073	16.2	0.0	1.5	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
RNA_helicase	PF00910.22	gi|564287834|ref|YP_008874026.1|	-	0.0056	17.0	0.1	0.011	16.1	0.1	1.6	1	1	0	1	1	1	1	RNA	helicase
AAA_10	PF12846.7	gi|564287834|ref|YP_008874026.1|	-	0.02	13.9	0.0	0.048	12.6	0.0	1.7	1	0	0	1	1	1	0	AAA-like	domain
DEAD	PF00270.29	gi|564287834|ref|YP_008874026.1|	-	0.022	14.5	2.3	2.4	7.9	0.2	2.5	2	1	1	3	3	2	0	DEAD/DEAH	box	helicase
AAA_7	PF12775.7	gi|564287834|ref|YP_008874026.1|	-	0.022	14.3	0.1	0.04	13.4	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_32	PF13654.6	gi|564287834|ref|YP_008874026.1|	-	0.025	13.4	1.3	0.16	10.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|564287834|ref|YP_008874026.1|	-	0.025	13.8	0.0	0.04	13.1	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
DUF87	PF01935.17	gi|564287834|ref|YP_008874026.1|	-	0.038	14.1	0.2	0.13	12.4	0.1	1.8	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_24	PF13479.6	gi|564287834|ref|YP_008874026.1|	-	0.063	13.0	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|564287834|ref|YP_008874026.1|	-	0.074	12.4	0.0	0.17	11.3	0.0	1.6	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_assoc_2	PF16193.5	gi|564287834|ref|YP_008874026.1|	-	0.077	13.3	0.3	0.21	12.0	0.3	1.7	1	0	0	1	1	1	0	AAA	C-terminal	domain
IstB_IS21	PF01695.17	gi|564287834|ref|YP_008874026.1|	-	0.1	12.4	0.1	0.23	11.2	0.1	1.7	1	1	1	2	2	2	0	IstB-like	ATP	binding	protein
PIF1	PF05970.14	gi|564287834|ref|YP_008874026.1|	-	0.11	11.6	0.0	0.23	10.6	0.0	1.5	1	1	0	1	1	1	0	PIF1-like	helicase
Phage_integrase	PF00589.22	gi|564287836|ref|YP_008874028.1|	-	4.4e-15	55.9	0.0	3e-14	53.2	0.0	2.1	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|564287836|ref|YP_008874028.1|	-	7.5e-07	29.4	0.0	1.3e-06	28.6	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|564287836|ref|YP_008874028.1|	-	1.6e-05	25.1	0.3	5.2e-05	23.5	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF3435	PF11917.8	gi|564287836|ref|YP_008874028.1|	-	0.058	12.3	0.0	0.22	10.4	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3435)
Phage_int_SAM_4	PF13495.6	gi|564287836|ref|YP_008874028.1|	-	0.075	13.5	0.0	0.18	12.3	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
Arg_decarbox_C	PF17944.1	gi|564287836|ref|YP_008874028.1|	-	0.086	13.4	0.0	0.32	11.6	0.0	2.0	2	0	0	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
DDE_Tnp_1	PF01609.21	gi|564287837|ref|YP_008874029.1|	-	4e-10	39.7	0.3	7.1e-10	38.9	0.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|564287837|ref|YP_008874029.1|	-	3.6e-06	26.9	0.0	2e-05	24.5	0.0	2.3	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_5	PF13546.6	gi|564287837|ref|YP_008874029.1|	-	0.00029	20.3	0.3	0.00058	19.3	0.3	1.5	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
Chordopox_A13L	PF05961.11	gi|564287930|ref|YP_008874030.1|	-	0.16	12.3	0.0	0.19	12.0	0.0	1.3	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
FixQ	PF05545.11	gi|564287930|ref|YP_008874030.1|	-	3	7.9	5.5	23	5.1	5.5	2.0	1	1	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Fic	PF02661.18	gi|564287838|ref|YP_008874031.1|	-	3e-25	88.9	0.0	1.7e-24	86.5	0.0	2.2	2	0	0	2	2	2	1	Fic/DOC	family
Fic_N	PF13784.6	gi|564287838|ref|YP_008874031.1|	-	1.8e-24	85.5	0.0	4.7e-24	84.2	0.0	1.7	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
HTH_Crp_2	PF13545.6	gi|564287838|ref|YP_008874031.1|	-	0.021	14.8	0.2	0.085	12.8	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_17	PF12728.7	gi|564287838|ref|YP_008874031.1|	-	0.044	14.0	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4172	PF13776.6	gi|564287838|ref|YP_008874031.1|	-	0.049	14.0	0.0	0.14	12.5	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4172)
FtsK_gamma	PF09397.10	gi|564287838|ref|YP_008874031.1|	-	0.067	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	Ftsk	gamma	domain
Usp	PF00582.26	gi|564287931|ref|YP_008874032.1|	-	4.9e-05	23.9	0.1	0.3	11.6	0.0	2.5	1	1	1	2	2	2	2	Universal	stress	protein	family
TrkA_N	PF02254.18	gi|564287839|ref|YP_008874033.1|	-	6.6e-25	87.6	1.1	1.1e-24	86.9	1.1	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564287839|ref|YP_008874033.1|	-	2.7e-08	33.5	1.4	5.6e-08	32.5	0.1	2.2	2	0	0	2	2	2	1	TrkA-C	domain
Pyr_redox	PF00070.27	gi|564287839|ref|YP_008874033.1|	-	1.3e-07	32.1	0.2	2.3e-07	31.2	0.2	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_10	PF13460.6	gi|564287839|ref|YP_008874033.1|	-	2e-07	31.1	0.5	3.3e-07	30.4	0.5	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_7	PF13241.6	gi|564287839|ref|YP_008874033.1|	-	8.4e-06	26.2	0.1	1.7e-05	25.2	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|564287839|ref|YP_008874033.1|	-	4.3e-05	22.9	0.0	6.8e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|564287839|ref|YP_008874033.1|	-	0.0002	20.7	0.1	0.00046	19.5	0.1	1.5	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564287839|ref|YP_008874033.1|	-	0.00033	20.8	0.2	0.0085	16.3	0.0	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564287839|ref|YP_008874033.1|	-	0.00082	19.0	0.8	0.0011	18.6	0.8	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|564287839|ref|YP_008874033.1|	-	0.001	18.7	0.2	0.0023	17.5	0.2	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NmrA	PF05368.13	gi|564287839|ref|YP_008874033.1|	-	0.0019	17.8	0.2	0.0032	17.1	0.2	1.3	1	0	0	1	1	1	1	NmrA-like	family
3HCDH_N	PF02737.18	gi|564287839|ref|YP_008874033.1|	-	0.0025	17.7	0.1	0.0043	16.9	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564287839|ref|YP_008874033.1|	-	0.0045	17.2	0.4	0.009	16.3	0.4	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Thi4	PF01946.17	gi|564287839|ref|YP_008874033.1|	-	0.0068	15.7	0.4	0.073	12.3	0.1	2.1	2	0	0	2	2	2	1	Thi4	family
Epimerase	PF01370.21	gi|564287839|ref|YP_008874033.1|	-	0.0097	15.4	0.2	0.016	14.7	0.2	1.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
HI0933_like	PF03486.14	gi|564287839|ref|YP_008874033.1|	-	0.017	13.9	0.1	0.024	13.4	0.1	1.2	1	0	0	1	1	1	0	HI0933-like	protein
adh_short_C2	PF13561.6	gi|564287839|ref|YP_008874033.1|	-	0.021	14.4	0.9	0.044	13.3	0.1	1.8	2	1	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
Trp_halogenase	PF04820.14	gi|564287839|ref|YP_008874033.1|	-	0.032	13.1	0.1	0.04	12.8	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_Gly3P_dh_N	PF01210.23	gi|564287839|ref|YP_008874033.1|	-	0.043	13.8	0.0	0.073	13.0	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
LpxI_N	PF17930.1	gi|564287839|ref|YP_008874033.1|	-	0.045	13.7	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	LpxI	N-terminal	domain
XdhC_C	PF13478.6	gi|564287839|ref|YP_008874033.1|	-	0.052	14.1	0.2	0.18	12.3	0.1	1.8	2	0	0	2	2	2	0	XdhC	Rossmann	domain
ApbA	PF02558.16	gi|564287839|ref|YP_008874033.1|	-	0.058	13.0	0.1	0.12	12.1	0.1	1.5	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Glyco_trans_4_4	PF13579.6	gi|564287839|ref|YP_008874033.1|	-	0.06	13.8	0.7	1	9.8	0.7	2.4	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|564287839|ref|YP_008874033.1|	-	0.12	12.4	0.1	0.34	10.9	0.1	1.9	1	1	1	2	2	2	0	Glycosyltransferase	Family	4
AA_permease_2	PF13520.6	gi|564287840|ref|YP_008874034.1|	-	5.2e-53	180.4	42.1	6.5e-53	180.1	42.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564287840|ref|YP_008874034.1|	-	2.1e-43	148.7	39.3	2.8e-43	148.2	39.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|564287840|ref|YP_008874034.1|	-	6.1e-06	25.3	14.2	6.1e-06	25.3	14.2	2.5	2	1	0	2	2	2	1	Spore	germination	protein
Trp_Tyr_perm	PF03222.13	gi|564287840|ref|YP_008874034.1|	-	0.68	8.9	36.6	0.16	11.0	27.7	2.9	1	1	0	2	2	2	0	Tryptophan/tyrosine	permease	family
TrkA_N	PF02254.18	gi|564287841|ref|YP_008874035.1|	-	5.8e-32	110.4	8.7	2.4e-16	60.0	0.3	2.7	2	1	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|564287841|ref|YP_008874035.1|	-	1.5e-19	69.5	0.2	3.3e-10	39.7	0.0	3.8	3	0	0	3	3	3	2	TrkA-C	domain
KH_1	PF00013.29	gi|564287841|ref|YP_008874035.1|	-	0.023	14.5	0.2	1.7	8.5	0.0	2.9	2	0	0	2	2	2	0	KH	domain
HTH_13	PF11972.8	gi|564287841|ref|YP_008874035.1|	-	0.045	13.8	0.2	0.17	11.9	0.0	2.1	2	0	0	2	2	2	0	HTH	DNA	binding	domain
IlvN	PF07991.12	gi|564287841|ref|YP_008874035.1|	-	0.049	13.2	0.6	4.5	6.8	0.2	2.3	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
DUF2529	PF10740.9	gi|564287841|ref|YP_008874035.1|	-	0.12	12.0	0.0	0.35	10.5	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2529)
Ion_trans_2	PF07885.16	gi|564287841|ref|YP_008874035.1|	-	2.2	8.3	7.5	4.4	7.3	7.5	1.5	1	0	0	1	1	1	0	Ion	channel
DisA_N	PF02457.16	gi|564287842|ref|YP_008874036.1|	-	2.3e-08	33.7	0.0	2.9e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Na_H_Exchanger	PF00999.21	gi|564287843|ref|YP_008874037.1|	-	5.3e-18	65.0	21.7	6.8e-18	64.6	21.7	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Tom6	PF17112.5	gi|564287843|ref|YP_008874037.1|	-	1.2	8.6	5.3	11	5.6	0.7	2.7	2	0	0	2	2	2	0	Mitochondrial	import	receptor	subunit	Tom6,	fungal
TrkA_C	PF02080.21	gi|564287932|ref|YP_008874038.1|	-	1.8e-13	50.1	1.1	3.1e-13	49.3	1.1	1.5	1	0	0	1	1	1	1	TrkA-C	domain
TrkA_N	PF02254.18	gi|564287932|ref|YP_008874038.1|	-	1.9e-08	34.6	3.9	9.9e-08	32.2	1.0	2.7	2	1	0	2	2	2	1	TrkA-N	domain
ADH_zinc_N	PF00107.26	gi|564287932|ref|YP_008874038.1|	-	0.053	13.5	0.1	0.15	12.0	0.0	1.8	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Castor_Poll_mid	PF06241.12	gi|564287932|ref|YP_008874038.1|	-	0.083	12.9	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
TrkH	PF02386.16	gi|564287844|ref|YP_008874039.1|	-	5.1e-60	203.4	14.4	7.5e-60	202.8	14.4	1.2	1	0	0	1	1	1	1	Cation	transport	protein
Form-deh_trans	PF09163.11	gi|564287844|ref|YP_008874039.1|	-	0.5	10.2	3.8	1.6	8.6	0.0	3.3	2	0	0	2	2	2	0	Formate	dehydrogenase	N,	transmembrane
Usp	PF00582.26	gi|564287845|ref|YP_008874041.1|	-	1.6e-09	38.4	0.4	2.2e-09	38.0	0.4	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF1179	PF06678.11	gi|564287845|ref|YP_008874041.1|	-	0.013	15.4	0.3	0.037	14.0	0.0	1.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1179)
AA_permease_2	PF13520.6	gi|564287846|ref|YP_008874042.1|	-	5.7e-44	150.6	43.8	7.7e-44	150.2	43.8	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564287846|ref|YP_008874042.1|	-	2.8e-35	121.8	44.9	1.7e-34	119.2	44.9	1.9	1	1	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|564287846|ref|YP_008874042.1|	-	1.1e-18	68.1	4.5	4.7e-11	43.4	0.6	3.3	2	1	1	3	3	3	3	Universal	stress	protein	family
Trp_Tyr_perm	PF03222.13	gi|564287846|ref|YP_008874042.1|	-	7.5e-08	31.8	24.8	1.2e-07	31.1	24.8	1.2	1	0	0	1	1	1	1	Tryptophan/tyrosine	permease	family
Spore_permease	PF03845.13	gi|564287846|ref|YP_008874042.1|	-	0.0015	17.5	13.6	0.0015	17.5	13.6	1.6	2	0	0	2	2	2	1	Spore	germination	protein
PAP2	PF01569.21	gi|564287934|ref|YP_008874043.1|	-	0.014	15.2	2.1	0.015	15.1	2.1	1.1	1	0	0	1	1	1	0	PAP2	superfamily
DUF1129	PF06570.11	gi|564287934|ref|YP_008874043.1|	-	0.052	13.0	2.3	0.058	12.9	2.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
DUF4191	PF13829.6	gi|564287934|ref|YP_008874043.1|	-	0.49	9.7	2.7	0.53	9.6	2.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Herpes_LMP1	PF05297.11	gi|564287934|ref|YP_008874043.1|	-	0.59	9.3	3.1	0.67	9.1	3.1	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DUF2207	PF09972.9	gi|564287934|ref|YP_008874043.1|	-	1.1	8.0	3.1	1	8.0	3.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
AAA_31	PF13614.6	gi|564287847|ref|YP_008874044.1|	-	9.2e-19	68.0	0.0	1.2e-18	67.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287847|ref|YP_008874044.1|	-	1.3e-12	47.8	0.0	1.8e-12	47.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|564287847|ref|YP_008874044.1|	-	9.7e-06	25.2	0.1	4.1e-05	23.2	0.0	1.8	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|564287847|ref|YP_008874044.1|	-	0.00014	21.2	0.1	0.054	12.8	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|564287847|ref|YP_008874044.1|	-	0.00034	19.9	0.2	0.00055	19.2	0.2	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|564287847|ref|YP_008874044.1|	-	0.0023	17.5	0.0	0.0047	16.4	0.0	1.5	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|564287847|ref|YP_008874044.1|	-	0.061	12.7	0.0	0.2	11.1	0.0	1.7	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Ntox34	PF15606.6	gi|564287849|ref|YP_008874046.1|	-	0.1	12.7	0.1	0.15	12.2	0.1	1.3	1	0	0	1	1	1	0	Bacterial	toxin	34
Pentapeptide_3	PF13576.6	gi|564287851|ref|YP_008874048.1|	-	8.6e-44	147.5	103.9	1e-09	38.4	4.8	9.7	6	3	5	11	11	11	8	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.16	gi|564287851|ref|YP_008874048.1|	-	1.7e-06	27.9	3.9	1.7e-06	27.9	3.9	2.3	1	1	1	2	2	2	1	Ion	channel
DUF3060	PF11259.8	gi|564287852|ref|YP_008874049.1|	-	0.059	13.1	8.7	0.56	9.9	1.2	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3060)
DUF2617	PF10936.8	gi|564287853|ref|YP_008874050.1|	-	6.7e-08	32.8	1.3	1.6e-06	28.3	1.3	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF2617
Spermine_synth	PF01564.17	gi|564287854|ref|YP_008874051.1|	-	1.2e-13	50.9	0.0	1.9e-13	50.2	0.0	1.3	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Methyltransf_30	PF05430.11	gi|564287854|ref|YP_008874051.1|	-	0.056	13.3	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
TAT_signal	PF10518.9	gi|564287855|ref|YP_008874052.1|	-	0.12	12.2	0.6	0.12	12.2	0.6	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CPBP	PF02517.16	gi|564287856|ref|YP_008874053.1|	-	5.6e-14	52.3	5.8	5.6e-14	52.3	5.8	2.8	3	1	0	3	3	3	1	CPBP	intramembrane	metalloprotease
DUF2105	PF09878.9	gi|564287856|ref|YP_008874053.1|	-	0.15	11.8	8.5	0.16	11.6	1.2	2.6	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2105)
DUF4282	PF14110.6	gi|564287856|ref|YP_008874053.1|	-	9.4	7.0	16.1	30	5.4	0.6	3.6	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4282)
MASE3	PF17159.4	gi|564287857|ref|YP_008874054.1|	-	0.01	15.5	0.1	0.011	15.4	0.1	1.1	1	0	0	1	1	1	0	Membrane-associated	sensor	domain
DUF1772	PF08592.11	gi|564287857|ref|YP_008874054.1|	-	0.02	15.2	0.8	0.02	15.2	0.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
MerC	PF03203.14	gi|564287857|ref|YP_008874054.1|	-	0.035	14.6	1.0	0.041	14.3	1.0	1.2	1	0	0	1	1	1	0	MerC	mercury	resistance	protein
LrgB	PF04172.16	gi|564287857|ref|YP_008874054.1|	-	0.039	13.5	4.5	0.026	14.1	3.1	1.4	2	0	0	2	2	2	0	LrgB-like	family
DUF5381	PF17353.2	gi|564287857|ref|YP_008874054.1|	-	0.044	13.5	1.3	0.053	13.3	1.0	1.2	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5381)
HTH_20	PF12840.7	gi|564287858|ref|YP_008874055.1|	-	1.6e-06	28.1	0.1	4.1e-06	26.8	0.2	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564287858|ref|YP_008874055.1|	-	2.3e-06	27.4	0.2	4.3e-06	26.5	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|564287858|ref|YP_008874055.1|	-	6e-05	22.8	0.2	0.00015	21.5	0.2	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564287858|ref|YP_008874055.1|	-	0.00012	21.9	0.0	0.00038	20.3	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_5	PF01022.20	gi|564287858|ref|YP_008874055.1|	-	0.00014	21.7	0.0	0.00046	20.0	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.14	gi|564287858|ref|YP_008874055.1|	-	0.00031	20.7	0.3	0.00067	19.6	0.2	1.6	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_IclR	PF09339.10	gi|564287858|ref|YP_008874055.1|	-	0.0058	16.4	0.0	0.013	15.3	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|564287858|ref|YP_008874055.1|	-	0.0062	15.9	0.0	0.014	14.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_Crp_2	PF13545.6	gi|564287858|ref|YP_008874055.1|	-	0.012	15.6	0.0	0.047	13.7	0.0	2.0	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287858|ref|YP_008874055.1|	-	0.012	15.1	0.0	0.022	14.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564287858|ref|YP_008874055.1|	-	0.014	15.2	0.2	0.049	13.5	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_23	PF13384.6	gi|564287858|ref|YP_008874055.1|	-	0.042	13.7	0.0	0.091	12.6	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2513	PF10711.9	gi|564287858|ref|YP_008874055.1|	-	0.15	12.4	0.0	0.24	11.7	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
Glyco_transf_21	PF13506.6	gi|564287859|ref|YP_008874056.1|	-	2.6e-12	46.5	0.0	4.3e-12	45.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.26	gi|564287859|ref|YP_008874056.1|	-	1.1e-06	28.5	0.3	3e-06	27.1	0.3	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564287859|ref|YP_008874056.1|	-	0.058	13.3	0.0	0.07	13.0	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF4781	PF16013.5	gi|564287859|ref|YP_008874056.1|	-	0.059	12.2	0.4	0.091	11.6	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
DUF4229	PF14012.6	gi|564287859|ref|YP_008874056.1|	-	0.23	11.6	9.3	0.24	11.5	5.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4229)
E1-E2_ATPase	PF00122.20	gi|564287859|ref|YP_008874056.1|	-	0.41	10.1	2.2	0.65	9.5	2.2	1.2	1	0	0	1	1	1	0	E1-E2	ATPase
TackOD1	PF18551.1	gi|564287860|ref|YP_008874057.1|	-	0.017	14.8	0.0	0.21	11.2	0.0	1.9	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
A2L_zn_ribbon	PF08792.10	gi|564287860|ref|YP_008874057.1|	-	0.023	14.4	1.0	1.3	8.9	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
UPF0547	PF10571.9	gi|564287860|ref|YP_008874057.1|	-	0.023	14.8	4.0	0.21	11.7	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Rubredoxin	PF00301.20	gi|564287860|ref|YP_008874057.1|	-	0.049	13.7	0.4	7	6.8	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin
Zn_Tnp_IS1595	PF12760.7	gi|564287860|ref|YP_008874057.1|	-	0.054	13.5	0.1	9.3	6.3	0.1	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564287860|ref|YP_008874057.1|	-	0.057	12.9	1.2	3	7.4	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|564287860|ref|YP_008874057.1|	-	0.063	12.9	0.7	1.5	8.5	0.0	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
IBR	PF01485.21	gi|564287860|ref|YP_008874057.1|	-	0.095	12.9	0.0	0.11	12.7	0.0	1.1	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Auto_anti-p27	PF06677.12	gi|564287860|ref|YP_008874057.1|	-	0.12	12.6	0.8	5.9	7.1	0.1	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF1610	PF07754.11	gi|564287860|ref|YP_008874057.1|	-	0.12	12.4	2.5	0.37	10.8	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Peripla_BP_2	PF01497.18	gi|564287862|ref|YP_008874059.1|	-	1.6e-08	34.4	0.4	4.1e-08	33.1	0.4	1.7	1	1	0	1	1	1	1	Periplasmic	binding	protein
PNPase	PF03726.14	gi|564287862|ref|YP_008874059.1|	-	0.034	14.6	0.3	0.16	12.5	0.1	2.1	1	1	1	2	2	2	0	Polyribonucleotide	nucleotidyltransferase,	RNA	binding	domain
HTH_18	PF12833.7	gi|564287935|ref|YP_008874060.1|	-	0.042	14.1	0.0	0.15	12.3	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HypA	PF01155.19	gi|564287863|ref|YP_008874061.1|	-	0.0012	18.9	5.3	0.45	10.6	0.3	2.3	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF4596	PF15363.6	gi|564287863|ref|YP_008874061.1|	-	0.0091	16.2	0.4	0.028	14.6	0.4	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4596)
RNA_POL_M_15KD	PF02150.16	gi|564287863|ref|YP_008874061.1|	-	0.023	14.6	3.3	6.7	6.7	0.0	3.6	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_15	PF17032.5	gi|564287863|ref|YP_008874061.1|	-	0.026	15.3	6.0	0.082	13.7	0.5	2.5	2	1	0	2	2	2	0	zinc-ribbon	family
DZR	PF12773.7	gi|564287863|ref|YP_008874061.1|	-	0.16	12.0	13.1	0.081	13.0	1.8	2.9	2	1	0	2	2	2	0	Double	zinc	ribbon
Baculo_LEF5_C	PF11792.8	gi|564287863|ref|YP_008874061.1|	-	0.52	10.0	0.0	0.52	10.0	0.0	2.8	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zinc-ribbons_6	PF07191.12	gi|564287863|ref|YP_008874061.1|	-	0.53	10.3	9.1	2.4	8.2	0.9	2.3	2	0	0	2	2	2	0	zinc-ribbons
zf-C3HC4_3	PF13920.6	gi|564287863|ref|YP_008874061.1|	-	0.82	9.6	8.0	0.24	11.3	2.0	2.4	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.7	gi|564287863|ref|YP_008874061.1|	-	0.95	9.5	12.5	3.8	7.6	2.5	3.6	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
RNHCP	PF12647.7	gi|564287863|ref|YP_008874061.1|	-	5.1	7.1	9.4	6.9	6.7	0.3	3.2	2	1	1	3	3	3	0	RNHCP	domain
2TM	PF13239.6	gi|564287936|ref|YP_008874062.1|	-	0.00045	20.5	0.4	0.00045	20.5	0.4	1.5	2	0	0	2	2	2	1	2TM	domain
AA_permease_2	PF13520.6	gi|564287936|ref|YP_008874062.1|	-	0.013	14.4	0.6	0.014	14.2	0.6	1.0	1	0	0	1	1	1	0	Amino	acid	permease
YtxH	PF12732.7	gi|564287864|ref|YP_008874063.1|	-	0.03	14.8	1.0	0.039	14.5	1.0	1.2	1	0	0	1	1	1	0	YtxH-like	protein
Soyouz_module	PF14313.6	gi|564287864|ref|YP_008874063.1|	-	0.28	11.0	2.0	0.32	10.8	0.7	1.8	2	0	0	2	2	2	0	N-terminal	region	of	Paramyxovirinae	phosphoprotein	(P)
Crystall_2	PF09076.10	gi|564287866|ref|YP_008874065.1|	-	0.044	13.7	0.0	0.073	13.0	0.0	1.3	1	0	0	1	1	1	0	Beta/Gamma	crystallin
TOBE_2	PF08402.10	gi|564287866|ref|YP_008874065.1|	-	0.15	12.3	0.9	0.7	10.1	0.7	1.8	1	1	1	2	2	2	0	TOBE	domain
Tropomyosin	PF00261.20	gi|564287867|ref|YP_008874066.1|	-	0.002	17.5	4.9	0.0032	16.9	4.9	1.2	1	0	0	1	1	1	1	Tropomyosin
Herpes_UL25	PF01499.16	gi|564287867|ref|YP_008874066.1|	-	0.016	13.8	1.4	0.024	13.2	1.4	1.2	1	0	0	1	1	1	0	Herpesvirus	UL25	family
DASH_Spc19	PF08287.11	gi|564287867|ref|YP_008874066.1|	-	0.024	14.5	3.2	0.042	13.8	3.2	1.4	1	0	0	1	1	1	0	Spc19
DUF4407	PF14362.6	gi|564287867|ref|YP_008874066.1|	-	0.048	13.0	8.5	0.09	12.1	8.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
TetR_C_23	PF17931.1	gi|564287867|ref|YP_008874066.1|	-	0.081	13.0	0.2	0.18	11.9	0.2	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Synaptobrevin	PF00957.21	gi|564287867|ref|YP_008874066.1|	-	0.2	11.4	1.2	0.45	10.3	1.2	1.6	1	0	0	1	1	1	0	Synaptobrevin
CorA	PF01544.18	gi|564287867|ref|YP_008874066.1|	-	0.51	9.6	2.9	0.54	9.5	2.0	1.4	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
BST2	PF16716.5	gi|564287867|ref|YP_008874066.1|	-	0.65	10.6	6.6	4.8	7.8	5.0	2.4	1	1	1	2	2	2	0	Bone	marrow	stromal	antigen	2
LPP	PF04728.13	gi|564287867|ref|YP_008874066.1|	-	0.78	10.2	4.7	0.59	10.6	0.1	2.9	1	1	2	3	3	3	0	Lipoprotein	leucine-zipper
ABC_tran_CTD	PF16326.5	gi|564287867|ref|YP_008874066.1|	-	2.5	8.4	7.5	22	5.4	4.7	3.1	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
NERD	PF08378.11	gi|564287938|ref|YP_008874071.1|	-	6e-07	29.9	0.0	1e-06	29.2	0.0	1.4	1	0	0	1	1	1	1	Nuclease-related	domain
UvrD_C_2	PF13538.6	gi|564287938|ref|YP_008874071.1|	-	7.2e-07	28.9	0.2	1.8e-06	27.7	0.2	1.7	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
UvrD-helicase	PF00580.21	gi|564287938|ref|YP_008874071.1|	-	0.019	14.5	0.0	4.6	6.7	0.0	2.4	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|564287938|ref|YP_008874071.1|	-	0.036	14.4	0.0	0.48	10.8	0.0	2.5	1	1	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|564287938|ref|YP_008874071.1|	-	0.06	12.6	0.0	0.16	11.1	0.0	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
ResIII	PF04851.15	gi|564287938|ref|YP_008874071.1|	-	0.076	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
DDE_Tnp_IS1595	PF12762.7	gi|564287871|ref|YP_008874073.1|	-	2.1e-21	76.5	0.0	2.8e-21	76.1	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|564287871|ref|YP_008874073.1|	-	9.6e-10	38.3	0.9	2e-09	37.2	0.9	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2089	PF09862.9	gi|564287871|ref|YP_008874073.1|	-	1.1e-07	31.9	0.0	1.9e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn_Tnp_IS1	PF03811.13	gi|564287871|ref|YP_008874073.1|	-	1.5e-05	24.6	4.0	3.9e-05	23.3	4.0	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
Zn-ribbon_8	PF09723.10	gi|564287871|ref|YP_008874073.1|	-	0.0074	16.4	0.5	3.1	8.0	0.1	2.4	2	0	0	2	2	2	1	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|564287871|ref|YP_008874073.1|	-	0.0085	15.8	0.3	0.014	15.1	0.3	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
HTH_30	PF13556.6	gi|564287871|ref|YP_008874073.1|	-	0.038	13.8	0.1	0.1	12.4	0.1	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
ADK_lid	PF05191.14	gi|564287871|ref|YP_008874073.1|	-	0.041	13.9	0.1	0.041	13.9	0.1	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-C4_Topoisom	PF01396.19	gi|564287871|ref|YP_008874073.1|	-	0.047	13.5	1.3	0.096	12.5	1.3	1.5	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
Sigma70_r4_2	PF08281.12	gi|564287871|ref|YP_008874073.1|	-	0.052	13.2	0.0	0.82	9.4	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_23	PF13384.6	gi|564287871|ref|YP_008874073.1|	-	0.08	12.8	0.0	0.32	10.9	0.0	2.0	1	0	0	1	1	1	0	Homeodomain-like	domain
PSD5	PF07637.11	gi|564287871|ref|YP_008874073.1|	-	0.089	13.1	0.0	0.27	11.6	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1595)
zinc-ribbons_6	PF07191.12	gi|564287871|ref|YP_008874073.1|	-	0.11	12.5	0.3	0.21	11.6	0.3	1.4	1	0	0	1	1	1	0	zinc-ribbons
Lar_restr_allev	PF14354.6	gi|564287871|ref|YP_008874073.1|	-	0.13	12.7	0.1	0.27	11.7	0.1	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DZR	PF12773.7	gi|564287871|ref|YP_008874073.1|	-	0.13	12.3	0.2	0.26	11.3	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_ribbon_recom	PF13408.6	gi|564287871|ref|YP_008874073.1|	-	0.16	12.5	2.4	0.45	11.1	2.4	1.8	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-Dof	PF02701.15	gi|564287871|ref|YP_008874073.1|	-	0.18	12.0	3.5	0.38	10.9	3.5	1.5	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
zf-C2H2_4	PF13894.6	gi|564287871|ref|YP_008874073.1|	-	0.32	11.9	1.7	1.1	10.3	0.2	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ISL3	PF14690.6	gi|564287871|ref|YP_008874073.1|	-	0.84	10.3	5.8	7.7	7.3	0.2	2.9	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2HC_2	PF13913.6	gi|564287871|ref|YP_008874073.1|	-	4.2	7.4	8.0	0.23	11.4	1.4	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
HSP70	PF00012.20	gi|564287872|ref|YP_008874075.1|	-	1.5e-120	403.2	0.7	1.5e-115	386.7	0.7	3.0	1	1	0	1	1	1	1	Hsp70	protein
MreB_Mbl	PF06723.13	gi|564287872|ref|YP_008874075.1|	-	1.3e-13	50.5	0.0	4.9e-12	45.3	0.0	2.6	2	1	0	2	2	2	1	MreB/Mbl	protein
Bacteriocin_IIc	PF10439.9	gi|564287941|ref|YP_008874076.1|	-	0.28	11.3	0.3	0.28	11.3	0.3	2.1	3	0	0	3	3	3	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Sdh_cyt	PF01127.22	gi|564287941|ref|YP_008874076.1|	-	1.5	8.9	9.5	0.41	10.7	5.4	2.1	1	1	2	3	3	3	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Herpes_UL43	PF05072.13	gi|564287873|ref|YP_008874077.1|	-	0.16	11.0	0.1	0.19	10.8	0.1	1.0	1	0	0	1	1	1	0	Herpesvirus	UL43	protein
NTP_transf_2	PF01909.23	gi|564287878|ref|YP_008874084.1|	-	4.6e-11	42.9	0.0	7.5e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|564287878|ref|YP_008874084.1|	-	5.2e-08	32.9	0.0	8e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
MarR_2	PF12802.7	gi|564287878|ref|YP_008874084.1|	-	0.00028	20.7	0.1	0.0018	18.1	0.1	2.1	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|564287878|ref|YP_008874084.1|	-	0.0022	17.5	0.0	0.016	14.8	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564287878|ref|YP_008874084.1|	-	0.045	13.6	0.0	0.083	12.7	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
REPA_OB_2	PF16900.5	gi|564287879|ref|YP_008874085.1|	-	0.002	18.0	0.0	0.0052	16.7	0.0	1.7	2	0	0	2	2	2	1	Replication	protein	A	OB	domain
tRNA_anti-codon	PF01336.25	gi|564287879|ref|YP_008874085.1|	-	0.0022	17.9	0.1	0.0044	17.0	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Occludin_ELL	PF07303.13	gi|564287880|ref|YP_008874086.1|	-	0.067	13.9	1.3	1.7	9.4	0.6	2.6	1	1	1	2	2	2	0	Occludin	homology	domain
Retrotrans_gag	PF03732.17	gi|564287880|ref|YP_008874086.1|	-	0.13	12.5	1.2	0.52	10.6	0.2	2.3	1	1	1	2	2	2	0	Retrotransposon	gag	protein
ADK_lid	PF05191.14	gi|564287944|ref|YP_008874087.1|	-	0.0012	18.8	0.2	0.0018	18.2	0.2	1.4	1	1	0	1	1	1	1	Adenylate	kinase,	active	site	lid
Terminase_GpA	PF05876.12	gi|564287944|ref|YP_008874087.1|	-	0.0013	17.4	0.7	0.0014	17.3	0.7	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
DUF3039	PF11238.8	gi|564287944|ref|YP_008874087.1|	-	0.0022	17.7	0.4	0.37	10.6	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3039)
zf-C2H2	PF00096.26	gi|564287944|ref|YP_008874087.1|	-	0.0072	16.7	2.4	0.54	10.8	0.2	2.2	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf_UBZ	PF18439.1	gi|564287944|ref|YP_008874087.1|	-	0.036	13.6	2.6	2.7	7.6	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_4	PF13717.6	gi|564287944|ref|YP_008874087.1|	-	0.037	14.0	1.9	0.092	12.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|564287944|ref|YP_008874087.1|	-	0.054	14.3	1.7	0.84	10.7	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-HYPF	PF07503.12	gi|564287944|ref|YP_008874087.1|	-	0.18	11.6	5.2	0.49	10.2	0.8	2.4	2	0	0	2	2	2	0	HypF	finger
zinc_ribbon_5	PF13719.6	gi|564287944|ref|YP_008874087.1|	-	0.28	10.9	2.4	0.73	9.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
TrwB_AAD_bind	PF10412.9	gi|564287882|ref|YP_008874089.1|	-	1.6e-31	109.6	0.0	2.2e-31	109.1	0.0	1.1	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|564287882|ref|YP_008874089.1|	-	2.2e-11	43.9	0.0	5e-11	42.7	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.6	gi|564287882|ref|YP_008874089.1|	-	2.1e-06	28.1	0.0	0.0009	19.5	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|564287882|ref|YP_008874089.1|	-	0.0012	19.3	0.0	0.0032	18.0	0.0	1.7	1	0	0	1	1	1	1	ABC	transporter
T4SS-DNA_transf	PF02534.14	gi|564287882|ref|YP_008874089.1|	-	0.0035	16.2	0.0	0.0057	15.5	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
DUF87	PF01935.17	gi|564287882|ref|YP_008874089.1|	-	0.019	15.0	0.0	0.043	13.9	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_10	PF12846.7	gi|564287882|ref|YP_008874089.1|	-	0.021	13.8	0.0	0.068	12.1	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|564287882|ref|YP_008874089.1|	-	0.029	14.8	0.2	0.48	10.8	0.2	2.5	1	1	0	1	1	1	0	AAA	ATPase	domain
ATPase	PF06745.13	gi|564287882|ref|YP_008874089.1|	-	0.052	12.9	0.0	0.17	11.2	0.0	1.7	2	0	0	2	2	2	0	KaiC
AAA_30	PF13604.6	gi|564287882|ref|YP_008874089.1|	-	0.078	12.7	0.0	0.24	11.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|564287882|ref|YP_008874089.1|	-	0.092	13.2	0.0	0.68	10.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|564287882|ref|YP_008874089.1|	-	0.19	11.2	0.0	0.33	10.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Relaxase	PF03432.14	gi|564287883|ref|YP_008874090.1|	-	0.028	14.0	0.3	0.057	13.0	0.3	1.8	1	1	0	1	1	1	0	Relaxase/Mobilisation	nuclease	domain
EF-G-binding_N	PF07299.11	gi|564287884|ref|YP_008874091.1|	-	0.15	12.6	3.2	0.52	10.9	0.8	2.3	2	1	0	2	2	2	0	Elongation	factor	G-binding	protein,	N-terminal
ATP-grasp_6	PF18419.1	gi|564287885|ref|YP_008874092.1|	-	0.0038	16.8	0.1	0.012	15.2	0.1	1.9	1	1	0	1	1	1	1	ATP-grasp-like	domain
DUF1778	PF08681.11	gi|564287885|ref|YP_008874092.1|	-	0.042	13.8	0.4	0.12	12.4	0.1	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1778)
RRF	PF01765.19	gi|564287885|ref|YP_008874092.1|	-	0.39	10.7	3.6	0.17	11.8	0.9	1.7	2	0	0	2	2	2	0	Ribosome	recycling	factor
AAA_22	PF13401.6	gi|564287886|ref|YP_008874093.1|	-	0.00023	21.4	1.1	0.017	15.4	0.3	3.0	3	0	0	3	3	3	1	AAA	domain
CagE_TrbE_VirB	PF03135.14	gi|564287886|ref|YP_008874093.1|	-	0.008	16.3	0.0	0.018	15.1	0.0	1.5	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
Zot	PF05707.12	gi|564287886|ref|YP_008874093.1|	-	0.0096	15.6	0.1	0.032	13.9	0.0	1.8	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_10	PF12846.7	gi|564287886|ref|YP_008874093.1|	-	0.024	13.6	0.0	5.6	5.8	0.0	2.3	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|564287886|ref|YP_008874093.1|	-	0.045	14.1	0.3	1	9.7	0.1	2.7	2	0	0	2	2	2	0	AAA	ATPase	domain
MeaB	PF03308.16	gi|564287886|ref|YP_008874093.1|	-	0.075	12.0	0.0	0.15	11.0	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
GAT	PF03127.14	gi|564287886|ref|YP_008874093.1|	-	0.27	11.5	2.5	4.5	7.7	0.1	3.5	3	0	0	3	3	3	0	GAT	domain
MgtE_N	PF03448.17	gi|564287886|ref|YP_008874093.1|	-	0.56	10.8	3.9	2	9.1	0.8	3.4	4	0	0	4	4	4	0	MgtE	intracellular	N	domain
YqfD	PF06898.11	gi|564287889|ref|YP_008874096.1|	-	0.056	12.3	0.2	0.086	11.7	0.2	1.2	1	0	0	1	1	1	0	Putative	stage	IV	sporulation	protein	YqfD
FMN_dh	PF01070.18	gi|564287890|ref|YP_008874097.1|	-	0.21	10.6	0.5	0.22	10.5	0.5	1.1	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
AAA_16	PF13191.6	gi|564287892|ref|YP_008874099.1|	-	7.8e-13	49.2	0.7	6.3e-12	46.2	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|564287892|ref|YP_008874099.1|	-	1.4e-12	48.2	0.0	3e-12	47.1	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|564287892|ref|YP_008874099.1|	-	2e-08	34.1	0.0	4.5e-08	33.0	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|564287892|ref|YP_008874099.1|	-	1.3e-07	32.0	0.0	2.7e-07	30.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|564287892|ref|YP_008874099.1|	-	2e-06	27.2	0.0	5e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|564287892|ref|YP_008874099.1|	-	4.4e-06	26.2	0.0	9e-06	25.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|564287892|ref|YP_008874099.1|	-	0.00012	22.1	0.0	0.0003	20.8	0.0	1.6	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|564287892|ref|YP_008874099.1|	-	0.00088	19.0	0.0	0.0085	15.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|564287892|ref|YP_008874099.1|	-	0.0023	18.4	0.0	0.087	13.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|564287892|ref|YP_008874099.1|	-	0.003	17.5	0.0	0.0088	16.0	0.0	1.7	2	0	0	2	2	2	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|564287892|ref|YP_008874099.1|	-	0.0031	17.2	0.0	0.0055	16.4	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|564287892|ref|YP_008874099.1|	-	0.007	15.9	0.0	0.028	13.9	0.0	2.0	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|564287892|ref|YP_008874099.1|	-	0.0095	16.3	0.0	0.025	14.9	0.0	1.8	1	0	0	1	1	1	1	RNA	helicase
AAA_29	PF13555.6	gi|564287892|ref|YP_008874099.1|	-	0.015	15.0	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564287892|ref|YP_008874099.1|	-	0.033	14.1	0.0	0.14	12.0	0.0	1.9	2	0	0	2	2	2	0	RsgA	GTPase
ABC_tran	PF00005.27	gi|564287892|ref|YP_008874099.1|	-	0.035	14.6	0.2	0.092	13.3	0.2	2.0	1	1	0	1	1	1	0	ABC	transporter
IstB_IS21	PF01695.17	gi|564287892|ref|YP_008874099.1|	-	0.044	13.5	0.1	0.25	11.0	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_25	PF13481.6	gi|564287892|ref|YP_008874099.1|	-	0.046	13.3	0.0	0.23	11.0	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|564287892|ref|YP_008874099.1|	-	0.05	13.9	0.0	0.096	13.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.11	gi|564287892|ref|YP_008874099.1|	-	0.069	12.0	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
AAA_5	PF07728.14	gi|564287892|ref|YP_008874099.1|	-	0.089	12.8	0.1	0.45	10.5	0.1	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|564287892|ref|YP_008874099.1|	-	0.09	12.2	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.23	gi|564287892|ref|YP_008874099.1|	-	0.12	12.4	0.0	0.5	10.5	0.0	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Polbeta	PF18765.1	gi|564287893|ref|YP_008874102.1|	-	6.2e-10	39.0	0.2	3.7e-09	36.6	0.1	2.0	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|564287893|ref|YP_008874102.1|	-	1.5e-08	34.8	0.6	4.8e-08	33.2	0.2	2.0	2	0	0	2	2	2	1	Nucleotidyltransferase	domain
MarR_2	PF12802.7	gi|564287893|ref|YP_008874102.1|	-	1.1e-06	28.4	0.0	2.3e-06	27.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|564287893|ref|YP_008874102.1|	-	0.0015	18.2	0.0	0.0038	16.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|564287893|ref|YP_008874102.1|	-	0.0015	18.5	0.1	0.0043	17.0	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
DNA_pol_B_palm	PF14792.6	gi|564287893|ref|YP_008874102.1|	-	0.0044	17.2	0.1	0.0092	16.2	0.1	1.5	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
Adenyl_cycl_N	PF12633.7	gi|564287893|ref|YP_008874102.1|	-	0.01	15.7	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
HTH_24	PF13412.6	gi|564287893|ref|YP_008874102.1|	-	0.084	12.4	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF1030	PF06270.11	gi|564287894|ref|YP_008874103.1|	-	0.11	12.3	0.1	0.27	11.0	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1030)
Phage_int_SAM_5	PF13102.6	gi|564287895|ref|YP_008874104.1|	-	7.4e-05	23.0	0.0	0.00017	21.9	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|564287895|ref|YP_008874104.1|	-	0.024	15.0	0.3	0.71	10.2	0.0	2.9	3	0	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
Cas_Cas6	PF01881.16	gi|564287896|ref|YP_008874105.1|	-	2.6e-18	67.0	0.0	3.3e-18	66.6	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas6
Cas_TM1802	PF09484.10	gi|564287897|ref|YP_008874106.1|	-	2.6e-19	69.4	0.0	8.1e-09	34.8	0.0	2.3	2	1	0	2	2	2	2	CRISPR-associated	protein	TM1802	(cas_TM1802)
Cas_Cas7	PF05107.12	gi|564287898|ref|YP_008874107.1|	-	1.3e-46	159.2	0.0	1.5e-46	159.0	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	protein	Cas7
Cas_Cas5d	PF09704.10	gi|564287899|ref|YP_008874108.1|	-	8.7e-10	38.8	0.0	1.2e-09	38.3	0.0	1.3	1	1	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
HD_6	PF18019.1	gi|564287900|ref|YP_008874109.1|	-	6.3e-09	36.2	0.1	2.9e-08	34.1	0.1	2.1	2	0	0	2	2	2	1	HD	domain
ResIII	PF04851.15	gi|564287900|ref|YP_008874109.1|	-	1.3e-07	31.8	0.0	2.7e-07	30.7	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|564287900|ref|YP_008874109.1|	-	4.7e-06	26.5	0.0	1.4e-05	24.9	0.0	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Rep_fac-A_C	PF08646.10	gi|564287900|ref|YP_008874109.1|	-	0.011	15.4	0.0	0.023	14.4	0.0	1.5	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
Cas_Cas4	PF01930.17	gi|564287901|ref|YP_008874110.1|	-	3.5e-46	157.3	0.0	4e-46	157.1	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|564287901|ref|YP_008874110.1|	-	0.0043	17.0	0.0	0.0049	16.8	0.0	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas1	PF01867.16	gi|564287902|ref|YP_008874111.1|	-	1.6e-86	290.0	0.0	1.9e-86	289.8	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
CRISPR_Cas2	PF09827.9	gi|564287903|ref|YP_008874112.1|	-	2.2e-14	53.4	0.0	2.6e-14	53.2	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Saw1	PF11561.8	gi|564287903|ref|YP_008874112.1|	-	0.096	12.2	0.2	0.26	10.8	0.1	1.6	1	1	1	2	2	2	0	Single	strand	annealing-weakened	1
PCNA_N	PF00705.18	gi|564287905|ref|YP_008874115.1|	-	0.0074	16.0	0.0	0.017	14.8	0.0	1.6	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
SprT-like	PF10263.9	gi|564287907|ref|YP_008874118.1|	-	0.17	11.8	0.2	0.62	9.9	0.1	1.8	2	0	0	2	2	2	0	SprT-like	family
Aminopep	PF10023.9	gi|564287907|ref|YP_008874118.1|	-	0.5	9.7	3.2	0.8	9.0	0.1	2.1	2	0	0	2	2	2	0	Putative	aminopeptidase
zf-ribbon_3	PF13248.6	gi|564287907|ref|YP_008874118.1|	-	0.59	9.6	2.4	0.64	9.5	0.7	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
HNH_5	PF14279.6	gi|564287949|ref|YP_008874120.1|	-	0.00017	21.4	0.1	0.00038	20.3	0.1	1.6	1	0	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.23	gi|564287949|ref|YP_008874120.1|	-	0.054	13.7	0.1	0.093	12.9	0.1	1.3	1	0	0	1	1	1	0	HNH	endonuclease
DZR	PF12773.7	gi|564287949|ref|YP_008874120.1|	-	0.074	13.1	0.2	0.13	12.3	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564287949|ref|YP_008874120.1|	-	0.12	11.8	0.9	0.79	9.2	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
FAM76	PF16046.5	gi|564287949|ref|YP_008874120.1|	-	0.22	10.8	0.0	0.33	10.3	0.0	1.2	1	0	0	1	1	1	0	FAM76	protein
Mur_ligase_M	PF08245.12	gi|564287909|ref|YP_008874123.1|	-	1.2e-06	28.6	0.0	2.1e-06	27.9	0.0	1.3	1	0	0	1	1	1	1	Mur	ligase	middle	domain
HTH_IclR	PF09339.10	gi|564287909|ref|YP_008874123.1|	-	0.13	12.1	0.2	0.72	9.7	0.1	2.4	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Caps_synth_CapC	PF14102.6	gi|564287910|ref|YP_008874124.1|	-	9.7e-27	93.8	42.6	4.4e-19	69.1	12.8	3.2	2	2	2	4	4	4	2	Capsule	biosynthesis	CapC
TMEM141	PF15110.6	gi|564287910|ref|YP_008874124.1|	-	1.4	9.6	4.7	3.4	8.3	0.6	2.9	2	1	1	3	3	3	0	TMEM141	protein	family
DUF2065	PF09838.9	gi|564287918|ref|YP_008874136.1|	-	0.015	15.3	0.0	5.8	7.0	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
DUF2530	PF10745.9	gi|564287919|ref|YP_008874137.1|	-	0.017	15.3	1.1	7.1	6.9	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
SLATT_6	PF18169.1	gi|564287919|ref|YP_008874137.1|	-	0.02	14.5	0.7	0.054	13.1	0.1	1.8	1	1	1	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	6
SLAC1	PF03595.17	gi|564287919|ref|YP_008874137.1|	-	0.027	13.7	4.9	0.035	13.4	4.9	1.1	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
DHHC	PF01529.20	gi|564287919|ref|YP_008874137.1|	-	0.15	12.2	1.4	0.2	11.7	1.4	1.2	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
FixP_N	PF14715.6	gi|564287919|ref|YP_008874137.1|	-	1.8	8.3	7.9	0.098	12.4	1.5	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
Wzy_C_2	PF11846.8	gi|564287920|ref|YP_008874138.1|	-	0.022	14.7	1.0	0.038	13.9	1.0	1.3	1	0	0	1	1	1	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
Methyltransf_13	PF08421.11	gi|564287921|ref|YP_008874139.1|	-	0.00096	19.4	0.1	0.0011	19.1	0.1	1.2	1	0	0	1	1	1	1	Putative	zinc	binding	domain
DUF1610	PF07754.11	gi|564287921|ref|YP_008874139.1|	-	0.062	13.3	0.9	0.12	12.4	0.9	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
SWIM	PF04434.17	gi|564287922|ref|YP_008874140.1|	-	0.021	14.5	0.1	0.021	14.5	0.1	2.4	2	1	0	2	2	2	0	SWIM	zinc	finger
TFIIB	PF00382.19	gi|564287923|ref|YP_008874141.1|	-	9.2e-20	70.5	2.2	6e-10	39.0	1.2	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564287923|ref|YP_008874141.1|	-	1.1e-08	34.4	2.8	1.1e-08	34.4	2.8	1.9	2	0	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|564287923|ref|YP_008874141.1|	-	0.0017	18.2	0.6	0.0017	18.2	0.6	1.7	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|564287923|ref|YP_008874141.1|	-	0.044	13.2	2.5	0.14	11.6	2.5	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
HTH_23	PF13384.6	gi|564287923|ref|YP_008874141.1|	-	0.052	13.3	0.2	3.2	7.6	0.0	3.2	3	0	0	3	3	3	0	Homeodomain-like	domain
DZR	PF12773.7	gi|564287923|ref|YP_008874141.1|	-	0.053	13.6	0.7	0.12	12.5	0.7	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
XRCC4	PF06632.12	gi|564287923|ref|YP_008874141.1|	-	0.077	11.8	1.3	0.097	11.5	1.3	1.1	1	0	0	1	1	1	0	DNA	double-strand	break	repair	and	V(D)J	recombination	protein	XRCC4
zinc-ribbons_6	PF07191.12	gi|564287923|ref|YP_008874141.1|	-	0.14	12.1	1.3	0.23	11.4	0.4	1.8	2	0	0	2	2	2	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|564287923|ref|YP_008874141.1|	-	3.4	7.9	4.6	8.1	6.7	0.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564287926|ref|YP_008874145.1|	-	0.017	15.2	1.3	0.72	10.0	0.2	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|564287926|ref|YP_008874145.1|	-	0.06	12.8	2.2	0.11	11.9	0.3	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|564287926|ref|YP_008874145.1|	-	0.16	12.3	4.5	0.57	10.5	0.9	2.1	1	1	1	2	2	2	0	zinc-ribbon
DUF35_N	PF12172.8	gi|564287926|ref|YP_008874145.1|	-	0.16	11.9	5.0	4.3	7.3	0.4	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Trm112p	PF03966.16	gi|564287926|ref|YP_008874145.1|	-	0.3	11.7	1.9	2.9	8.5	0.1	2.1	1	1	1	2	2	2	0	Trm112p-like	protein
zf-C2H2_4	PF13894.6	gi|564287926|ref|YP_008874145.1|	-	0.78	10.8	3.8	13	6.9	0.5	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_4	PF13717.6	gi|564287926|ref|YP_008874145.1|	-	0.78	9.7	4.4	3.7	7.6	4.4	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
N6_Mtase	PF02384.16	gi|564287927|ref|YP_008874146.1|	-	4.3e-13	49.2	0.0	6.2e-13	48.7	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
AviRa	PF11599.8	gi|564287927|ref|YP_008874146.1|	-	0.091	12.2	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	RRNA	methyltransferase	AviRa
Methyltransf_31	PF13847.6	gi|564287927|ref|YP_008874146.1|	-	0.12	12.2	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564287927|ref|YP_008874146.1|	-	0.13	13.0	0.1	0.35	11.6	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
DUF664	PF04978.12	gi|564287928|ref|YP_008874147.1|	-	0.1	13.0	0.1	0.12	12.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF664)
PadR	PF03551.14	gi|564287929|ref|YP_008874148.1|	-	1.7e-17	63.1	0.3	2e-17	62.9	0.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|564287929|ref|YP_008874148.1|	-	0.00028	20.7	0.0	0.00039	20.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|564287929|ref|YP_008874148.1|	-	0.011	15.7	0.0	0.015	15.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|564287929|ref|YP_008874148.1|	-	0.017	15.6	0.0	0.022	15.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|564287929|ref|YP_008874148.1|	-	0.04	13.7	0.0	0.06	13.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TrmB	PF01978.19	gi|564287929|ref|YP_008874148.1|	-	0.05	13.5	0.1	0.077	12.9	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564287929|ref|YP_008874148.1|	-	0.14	12.1	0.3	0.6	10.0	0.1	2.2	2	1	0	2	2	2	0	MarR	family
HTH_34	PF13601.6	gi|564287929|ref|YP_008874148.1|	-	0.16	12.2	0.0	0.2	11.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Cdc6_C	PF09079.11	gi|564287958|ref|YP_008874149.1|	-	5e-22	77.7	0.0	1.7e-21	76.0	0.0	2.0	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|564287958|ref|YP_008874149.1|	-	3.3e-10	40.4	0.0	7.6e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564287958|ref|YP_008874149.1|	-	1.2e-09	38.8	0.3	1.4e-08	35.3	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
DUF815	PF05673.13	gi|564287958|ref|YP_008874149.1|	-	0.0021	17.3	0.0	0.0035	16.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA	PF00004.29	gi|564287958|ref|YP_008874149.1|	-	0.0053	17.2	0.0	0.013	15.9	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|564287958|ref|YP_008874149.1|	-	0.0072	16.3	0.0	0.015	15.2	0.0	1.5	2	0	0	2	2	2	1	NACHT	domain
ATPase_2	PF01637.18	gi|564287958|ref|YP_008874149.1|	-	0.0088	16.0	0.0	0.014	15.3	0.0	1.4	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
RNA_helicase	PF00910.22	gi|564287958|ref|YP_008874149.1|	-	0.035	14.5	0.0	0.072	13.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_7	PF12775.7	gi|564287958|ref|YP_008874149.1|	-	0.054	13.0	0.0	0.097	12.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DEAD	PF00270.29	gi|564287958|ref|YP_008874149.1|	-	0.083	12.7	0.3	5.4	6.8	0.0	2.3	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
HalOD1	PF18545.1	gi|564287959|ref|YP_008874150.1|	-	5.1e-15	55.5	0.3	6.5e-15	55.2	0.3	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Hemopexin	PF00045.19	gi|564287960|ref|YP_008874151.1|	-	0.011	15.6	1.1	0.11	12.5	0.5	2.5	2	0	0	2	2	2	0	Hemopexin
TnpW	PF14202.6	gi|564287960|ref|YP_008874151.1|	-	0.29	11.0	0.5	0.6	10.0	0.5	1.5	1	0	0	1	1	1	0	Transposon-encoded	protein	TnpW
TetR_C_6	PF13977.6	gi|564287961|ref|YP_008874152.1|	-	1.1e-12	48.2	0.2	1.6e-12	47.7	0.2	1.2	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564287961|ref|YP_008874152.1|	-	2.7e-10	39.9	0.4	5.9e-10	38.8	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|564287961|ref|YP_008874152.1|	-	1.6e-05	25.0	0.0	3e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564287961|ref|YP_008874152.1|	-	2.6e-05	24.2	0.1	4.3e-05	23.5	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|564287961|ref|YP_008874152.1|	-	0.00049	20.3	0.5	0.0008	19.7	0.1	1.7	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|564287961|ref|YP_008874152.1|	-	0.0065	16.5	0.1	0.011	15.8	0.1	1.4	1	0	0	1	1	1	1	AefR-like	transcriptional	repressor,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|564287961|ref|YP_008874152.1|	-	0.03	13.8	0.0	0.072	12.6	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
TetR_C_17	PF17922.1	gi|564287961|ref|YP_008874152.1|	-	0.044	13.9	0.0	0.2	11.7	0.0	1.9	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_5	PF01022.20	gi|564287961|ref|YP_008874152.1|	-	0.056	13.3	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CARDB	PF07705.11	gi|564287962|ref|YP_008874153.1|	-	1.5e-14	54.0	25.7	0.0023	18.1	0.1	5.5	5	0	0	5	5	5	5	CARDB
NPCBM_assoc	PF10633.9	gi|564287962|ref|YP_008874153.1|	-	1.7e-13	50.6	18.6	9.5e-05	22.6	0.4	7.9	6	3	0	6	6	6	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|564287962|ref|YP_008874153.1|	-	3.2e-07	30.5	37.6	0.069	13.5	1.2	7.0	5	3	0	5	5	5	5	Domain	of	unknown	function	DUF11
ASH	PF15780.5	gi|564287962|ref|YP_008874153.1|	-	1.5e-05	25.1	10.6	0.066	13.4	0.0	5.3	5	1	0	5	5	5	2	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Fn3-like	PF14310.6	gi|564287962|ref|YP_008874153.1|	-	5.5e-05	23.2	12.5	0.95	9.6	0.2	7.3	9	0	0	9	9	8	1	Fibronectin	type	III-like	domain
N_BRCA1_IG	PF16158.5	gi|564287962|ref|YP_008874153.1|	-	0.00017	22.3	2.3	5.7	7.7	0.1	5.2	6	0	0	6	6	6	1	Ig-like	domain	from	next	to	BRCA1	gene
Transglut_C	PF00927.22	gi|564287962|ref|YP_008874153.1|	-	0.00094	19.3	0.2	12	6.1	0.0	4.5	5	0	0	5	5	5	1	Transglutaminase	family,	C-terminal	ig	like	domain
DUF4832	PF16116.5	gi|564287962|ref|YP_008874153.1|	-	0.0028	17.5	4.9	11	5.7	0.0	4.9	4	1	1	5	5	5	1	Domain	of	unknown	function	(DUF4832)
FAS_meander	PF17951.1	gi|564287962|ref|YP_008874153.1|	-	0.025	14.4	0.0	0.14	11.9	0.0	2.3	1	0	0	1	1	1	0	Fatty	acid	synthase	meander	beta	sheet	domain
AP3B1_C	PF14796.6	gi|564287962|ref|YP_008874153.1|	-	0.032	14.5	3.3	0.24	11.6	0.0	3.2	4	0	0	4	4	4	0	Clathrin-adaptor	complex-3	beta-1	subunit	C-terminal
BppU_N	PF10651.9	gi|564287962|ref|YP_008874153.1|	-	0.036	13.8	0.5	0.13	12.0	0.1	2.1	2	0	0	2	2	2	0	BppU	N-terminal	domain
Alpha_adaptinC2	PF02883.20	gi|564287962|ref|YP_008874153.1|	-	0.04	14.2	1.1	2.2	8.6	0.0	3.1	3	0	0	3	3	3	0	Adaptin	C-terminal	domain
MBG	PF17883.1	gi|564287962|ref|YP_008874153.1|	-	0.056	14.0	0.4	0.056	14.0	0.4	4.9	4	2	1	5	5	5	0	MBG	domain
Pilin	PF00114.19	gi|564287962|ref|YP_008874153.1|	-	3.7	8.5	19.1	6.5	7.7	0.1	5.1	5	0	0	5	5	5	0	Pilin	(bacterial	filament)
MMPL	PF03176.15	gi|564287963|ref|YP_008874154.1|	-	2e-27	96.0	26.0	4.7e-20	71.8	1.7	2.7	2	1	0	2	2	2	2	MMPL	family
Patched	PF02460.18	gi|564287963|ref|YP_008874154.1|	-	8.5e-08	30.8	12.8	5.8e-07	28.0	5.9	2.4	2	0	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|564287963|ref|YP_008874154.1|	-	1.2e-06	28.4	4.4	0.00032	20.6	0.5	2.7	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
TetR_C_6	PF13977.6	gi|564287964|ref|YP_008874155.1|	-	2.8e-13	50.1	0.0	4.2e-13	49.5	0.0	1.3	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564287964|ref|YP_008874155.1|	-	1.4e-10	40.8	0.6	5.4e-10	38.9	0.1	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|564287964|ref|YP_008874155.1|	-	0.00025	21.3	0.3	0.00056	20.1	0.2	1.7	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564287964|ref|YP_008874155.1|	-	0.016	15.3	0.2	0.032	14.3	0.2	1.7	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|564287964|ref|YP_008874155.1|	-	0.018	15.0	0.2	0.028	14.5	0.2	1.2	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564287964|ref|YP_008874155.1|	-	0.04	14.0	0.4	0.089	12.9	0.0	1.8	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_36	PF18598.1	gi|564287964|ref|YP_008874155.1|	-	0.053	13.5	0.2	0.17	11.9	0.1	1.8	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_38	PF13936.6	gi|564287964|ref|YP_008874155.1|	-	0.055	13.2	0.0	0.15	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
TetR_C_37	PF18665.1	gi|564287964|ref|YP_008874155.1|	-	0.083	13.5	0.1	0.21	12.2	0.0	1.7	2	1	1	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
LUD_dom	PF02589.15	gi|564287965|ref|YP_008874156.1|	-	8.4e-40	136.5	0.1	1e-39	136.2	0.1	1.2	1	0	0	1	1	1	1	LUD	domain
OKR_DC_1_N	PF03709.15	gi|564287965|ref|YP_008874156.1|	-	0.016	15.5	0.1	0.044	14.1	0.1	1.8	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
YcaO	PF02624.16	gi|564287965|ref|YP_008874156.1|	-	0.025	13.8	0.0	0.041	13.2	0.0	1.3	1	0	0	1	1	1	0	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
Secretin_N	PF03958.17	gi|564287965|ref|YP_008874156.1|	-	0.027	14.9	1.0	0.096	13.1	0.7	2.2	1	1	1	2	2	2	0	Bacterial	type	II/III	secretion	system	short	domain
UPF0180	PF03698.13	gi|564287965|ref|YP_008874156.1|	-	0.036	14.2	0.1	0.096	12.9	0.1	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
RsgA_GTPase	PF03193.16	gi|564287965|ref|YP_008874156.1|	-	0.037	13.9	0.1	0.07	13.0	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
CHASE2	PF05226.11	gi|564287965|ref|YP_008874156.1|	-	0.06	13.0	0.1	0.061	13.0	0.1	1.2	1	0	0	1	1	1	0	CHASE2	domain
PrpR_N	PF06506.11	gi|564287965|ref|YP_008874156.1|	-	0.071	12.7	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Propionate	catabolism	activator
zinc_ribbon_10	PF10058.9	gi|564287966|ref|YP_008874157.1|	-	0.00054	19.6	0.1	0.00073	19.2	0.1	1.3	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
TackOD1	PF18551.1	gi|564287966|ref|YP_008874157.1|	-	0.002	17.8	0.2	0.0023	17.6	0.2	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
C1_4	PF07975.12	gi|564287966|ref|YP_008874157.1|	-	0.0059	16.8	0.3	0.55	10.5	0.0	2.1	2	0	0	2	2	2	1	TFIIH	C1-like	domain
zf_UBZ	PF18439.1	gi|564287966|ref|YP_008874157.1|	-	0.01	15.4	2.1	0.15	11.7	0.2	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
IBR	PF01485.21	gi|564287966|ref|YP_008874157.1|	-	0.013	15.7	0.4	0.017	15.4	0.4	1.3	1	1	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Zn-ribbon_8	PF09723.10	gi|564287966|ref|YP_008874157.1|	-	0.013	15.6	1.7	0.23	11.6	0.3	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564287966|ref|YP_008874157.1|	-	0.018	15.0	1.9	0.23	11.5	2.4	2.0	1	1	1	2	2	2	0	zinc-ribbons
HscB_4_cys	PF18256.1	gi|564287966|ref|YP_008874157.1|	-	0.02	14.7	0.5	4.5	7.2	0.1	2.3	2	0	0	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
zinc_ribbon_9	PF14369.6	gi|564287966|ref|YP_008874157.1|	-	0.023	14.9	1.2	3.3	8.0	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|564287966|ref|YP_008874157.1|	-	0.031	14.2	2.2	0.22	11.5	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564287966|ref|YP_008874157.1|	-	0.045	13.7	0.7	1.6	8.7	0.2	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
TRAF6_Z2	PF18048.1	gi|564287966|ref|YP_008874157.1|	-	0.055	13.6	0.4	0.055	13.6	0.4	2.0	2	0	0	2	2	2	0	TNF	receptor-associated	factor	6	zinc	finger	2
UPF0547	PF10571.9	gi|564287966|ref|YP_008874157.1|	-	0.062	13.4	5.3	0.67	10.1	1.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.6	gi|564287966|ref|YP_008874157.1|	-	0.072	12.9	1.2	3.4	7.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|564287966|ref|YP_008874157.1|	-	0.078	13.0	0.6	0.84	9.7	0.1	2.0	2	0	0	2	2	2	0	CpXC	protein
Cys_rich_KTR	PF14205.6	gi|564287966|ref|YP_008874157.1|	-	0.1	12.4	0.2	4.8	7.1	0.0	2.1	2	0	0	2	2	2	0	Cysteine-rich	KTR
PhnA_Zn_Ribbon	PF08274.12	gi|564287966|ref|YP_008874157.1|	-	0.14	12.2	2.6	9.1	6.3	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Peripla_BP_2	PF01497.18	gi|564287967|ref|YP_008874158.1|	-	4.4e-13	49.3	0.0	2.8e-12	46.7	0.0	1.9	2	0	0	2	2	2	1	Periplasmic	binding	protein
FecCD	PF01032.18	gi|564287968|ref|YP_008874159.1|	-	2e-84	283.2	34.6	2.6e-84	282.9	34.6	1.2	1	0	0	1	1	1	1	FecCD	transport	family
PT-VENN	PF04829.13	gi|564287968|ref|YP_008874159.1|	-	0.26	11.4	6.7	0.56	10.3	0.1	3.6	3	0	0	3	3	3	0	Pre-toxin	domain	with	VENN	motif
ABC_tran	PF00005.27	gi|564287969|ref|YP_008874160.1|	-	8.5e-30	104.1	0.0	1.2e-29	103.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287969|ref|YP_008874160.1|	-	3.5e-13	50.0	1.9	5.2e-06	26.5	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287969|ref|YP_008874160.1|	-	5.4e-13	48.9	0.1	1.3e-06	28.0	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564287969|ref|YP_008874160.1|	-	4.2e-07	30.0	0.0	6.3e-05	22.8	0.0	2.1	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287969|ref|YP_008874160.1|	-	5.3e-07	29.3	0.0	1.3e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|564287969|ref|YP_008874160.1|	-	2.3e-05	23.4	1.2	0.045	12.5	0.0	3.0	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_22	PF13401.6	gi|564287969|ref|YP_008874160.1|	-	7.2e-05	23.1	0.2	0.00043	20.6	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564287969|ref|YP_008874160.1|	-	0.0001	22.7	0.1	0.00027	21.3	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|564287969|ref|YP_008874160.1|	-	0.00022	20.9	0.4	0.012	15.2	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|564287969|ref|YP_008874160.1|	-	0.00035	21.1	0.0	0.00059	20.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564287969|ref|YP_008874160.1|	-	0.0029	17.3	0.1	0.0057	16.4	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564287969|ref|YP_008874160.1|	-	0.0065	16.6	0.1	0.02	15.1	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|564287969|ref|YP_008874160.1|	-	0.012	15.7	0.1	0.43	10.7	0.0	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
TniB	PF05621.11	gi|564287969|ref|YP_008874160.1|	-	0.013	14.9	0.1	0.43	10.0	0.1	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
MukB	PF04310.12	gi|564287969|ref|YP_008874160.1|	-	0.015	15.1	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	MukB	N-terminal
AAA_28	PF13521.6	gi|564287969|ref|YP_008874160.1|	-	0.016	15.4	0.0	0.038	14.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|564287969|ref|YP_008874160.1|	-	0.018	15.0	0.0	0.036	14.0	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|564287969|ref|YP_008874160.1|	-	0.019	14.9	0.0	0.043	13.7	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
AAA_14	PF13173.6	gi|564287969|ref|YP_008874160.1|	-	0.025	14.6	0.0	0.08	13.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|564287969|ref|YP_008874160.1|	-	0.028	13.2	0.0	1.1	8.0	0.0	2.1	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
ATP_bind_1	PF03029.17	gi|564287969|ref|YP_008874160.1|	-	0.03	14.1	0.1	0.98	9.2	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA	PF00004.29	gi|564287969|ref|YP_008874160.1|	-	0.037	14.4	0.2	0.13	12.7	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|564287969|ref|YP_008874160.1|	-	0.061	12.9	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|564287969|ref|YP_008874160.1|	-	0.069	13.6	0.0	0.21	12.0	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
ATPase_2	PF01637.18	gi|564287969|ref|YP_008874160.1|	-	0.07	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Zeta_toxin	PF06414.12	gi|564287969|ref|YP_008874160.1|	-	0.077	12.3	0.0	0.18	11.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_24	PF13479.6	gi|564287969|ref|YP_008874160.1|	-	0.091	12.5	0.2	0.26	11.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|564287969|ref|YP_008874160.1|	-	0.094	12.6	0.2	1.4	8.8	0.0	2.3	2	0	0	2	2	2	0	NTPase
cobW	PF02492.19	gi|564287969|ref|YP_008874160.1|	-	0.095	12.3	0.2	0.18	11.4	0.2	1.7	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_5	PF07728.14	gi|564287969|ref|YP_008874160.1|	-	0.14	12.2	0.0	0.37	10.8	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
VirE	PF05272.11	gi|564287969|ref|YP_008874160.1|	-	0.16	11.7	0.0	0.25	11.1	0.0	1.2	1	0	0	1	1	1	0	Virulence-associated	protein	E
AAA_18	PF13238.6	gi|564287969|ref|YP_008874160.1|	-	0.16	12.5	0.0	0.49	10.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
PAPS_reduct	PF01507.19	gi|564287969|ref|YP_008874160.1|	-	0.19	11.7	0.0	0.36	10.9	0.0	1.4	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
SBF	PF01758.16	gi|564287970|ref|YP_008874161.1|	-	7.1e-38	130.2	10.5	9.9e-38	129.8	10.5	1.2	1	0	0	1	1	1	1	Sodium	Bile	acid	symporter	family
SBF_like	PF13593.6	gi|564287970|ref|YP_008874161.1|	-	6.5e-14	52.0	8.3	9.1e-14	51.5	8.3	1.3	1	0	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
CBP_BcsF	PF11120.8	gi|564287970|ref|YP_008874161.1|	-	0.045	13.9	0.3	0.15	12.2	0.3	2.0	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsF
Mem_trans	PF03547.18	gi|564287970|ref|YP_008874161.1|	-	0.2	10.0	9.2	0.014	13.9	3.3	1.9	1	1	1	2	2	2	0	Membrane	transport	protein
Bestrophin	PF01062.21	gi|564287970|ref|YP_008874161.1|	-	0.22	10.8	0.9	0.47	9.8	0.9	1.5	1	0	0	1	1	1	0	Bestrophin,	RFP-TM,	chloride	channel
Bac_export_2	PF01312.19	gi|564287970|ref|YP_008874161.1|	-	0.51	9.5	4.0	0.93	8.6	4.0	1.4	1	0	0	1	1	1	0	FlhB	HrpN	YscU	SpaS	Family
UbiA	PF01040.18	gi|564287971|ref|YP_008874162.1|	-	1.2e-15	57.5	20.2	2e-15	56.8	20.1	1.4	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
HisKA_7TM	PF16927.5	gi|564287972|ref|YP_008874163.1|	-	3.2e-52	177.7	16.0	4.1e-52	177.4	16.0	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|564287972|ref|YP_008874163.1|	-	4.2e-13	49.8	0.1	7.9e-13	48.9	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564287972|ref|YP_008874163.1|	-	9.3e-06	25.6	0.1	1.9e-05	24.6	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.10	gi|564287972|ref|YP_008874163.1|	-	0.0006	20.0	0.1	0.0033	17.6	0.1	2.3	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564287972|ref|YP_008874163.1|	-	0.00079	19.4	0.0	0.0036	17.3	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
PAS_9	PF13426.7	gi|564287972|ref|YP_008874163.1|	-	0.0016	18.7	0.0	0.0057	16.9	0.0	1.9	1	1	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|564287972|ref|YP_008874163.1|	-	0.0037	17.3	0.1	0.012	15.6	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_10	PF13596.6	gi|564287972|ref|YP_008874163.1|	-	0.014	15.9	0.0	0.055	14.1	0.0	2.0	1	1	1	2	2	2	0	PAS	domain
HATPase_c_3	PF13589.6	gi|564287972|ref|YP_008874163.1|	-	0.041	13.7	0.0	0.078	12.8	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TusA	PF01206.17	gi|564287973|ref|YP_008874164.1|	-	8.2e-07	28.8	0.0	1.1e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2270	PF10028.9	gi|564287974|ref|YP_008874165.1|	-	3.9e-74	248.2	4.9	4.6e-74	248.0	4.9	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
Acyl_transf_3	PF01757.22	gi|564287974|ref|YP_008874165.1|	-	0.025	13.6	0.2	0.025	13.6	0.2	2.0	2	0	0	2	2	2	0	Acyltransferase	family
Jnk-SapK_ap_N	PF09744.9	gi|564287975|ref|YP_008874166.1|	-	0.00015	22.0	17.3	0.0002	21.6	17.3	1.1	1	0	0	1	1	1	1	JNK_SAPK-associated	protein-1
Mt_ATP-synt_B	PF05405.14	gi|564287975|ref|YP_008874166.1|	-	0.0018	17.9	4.6	0.0041	16.7	4.2	1.6	1	1	1	2	2	2	1	Mitochondrial	ATP	synthase	B	chain	precursor	(ATP-synt_B)
Atg14	PF10186.9	gi|564287975|ref|YP_008874166.1|	-	0.0019	17.3	10.1	0.0025	17.0	10.1	1.1	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Tho2	PF11262.8	gi|564287975|ref|YP_008874166.1|	-	0.0024	17.1	8.3	0.0028	16.9	8.3	1.0	1	0	0	1	1	1	1	Transcription	factor/nuclear	export	subunit	protein	2
HemX	PF04375.14	gi|564287975|ref|YP_008874166.1|	-	0.0032	16.8	4.9	0.0039	16.5	4.9	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Golgin_A5	PF09787.9	gi|564287975|ref|YP_008874166.1|	-	0.0033	16.9	14.2	0.0044	16.5	14.2	1.1	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
DUF3552	PF12072.8	gi|564287975|ref|YP_008874166.1|	-	0.004	16.6	11.8	0.0047	16.4	11.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|564287975|ref|YP_008874166.1|	-	0.0042	16.4	9.2	0.0054	16.1	9.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
GBP_C	PF02841.14	gi|564287975|ref|YP_008874166.1|	-	0.0071	15.8	9.8	0.0081	15.6	9.8	1.0	1	0	0	1	1	1	1	Guanylate-binding	protein,	C-terminal	domain
ERM	PF00769.19	gi|564287975|ref|YP_008874166.1|	-	0.0082	16.0	14.9	0.01	15.7	14.9	1.1	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
YabA	PF06156.13	gi|564287975|ref|YP_008874166.1|	-	0.013	16.2	7.1	0.013	16.2	7.1	2.1	1	1	1	2	2	2	0	Initiation	control	protein	YabA
UPF0242	PF06785.11	gi|564287975|ref|YP_008874166.1|	-	0.021	15.0	11.2	0.027	14.6	11.2	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DivIC	PF04977.15	gi|564287975|ref|YP_008874166.1|	-	0.024	14.4	3.3	0.024	14.4	3.3	2.4	1	1	1	2	2	2	0	Septum	formation	initiator
PEARLI-4	PF05278.12	gi|564287975|ref|YP_008874166.1|	-	0.025	14.2	6.2	0.034	13.8	6.2	1.3	1	0	0	1	1	1	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
ADIP	PF11559.8	gi|564287975|ref|YP_008874166.1|	-	0.037	14.1	16.7	0.052	13.6	16.7	1.3	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
RasGAP_C	PF03836.15	gi|564287975|ref|YP_008874166.1|	-	0.058	13.5	5.1	0.073	13.2	5.1	1.1	1	0	0	1	1	1	0	RasGAP	C-terminus
KASH_CCD	PF14662.6	gi|564287975|ref|YP_008874166.1|	-	0.066	13.0	15.5	0.088	12.6	15.5	1.1	1	0	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
Spc7	PF08317.11	gi|564287975|ref|YP_008874166.1|	-	0.082	11.8	13.4	0.1	11.4	13.4	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Thioesterase	PF00975.20	gi|564287975|ref|YP_008874166.1|	-	0.14	12.2	0.9	0.17	11.9	0.9	1.0	1	0	0	1	1	1	0	Thioesterase	domain
DivIVA	PF05103.13	gi|564287975|ref|YP_008874166.1|	-	0.16	12.1	13.7	0.21	11.7	13.7	1.1	1	0	0	1	1	1	0	DivIVA	protein
DUF4407	PF14362.6	gi|564287975|ref|YP_008874166.1|	-	0.16	11.3	8.0	0.21	10.9	8.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
FUSC	PF04632.12	gi|564287975|ref|YP_008874166.1|	-	0.17	10.4	4.1	0.2	10.1	4.1	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Exonuc_VII_L	PF02601.15	gi|564287975|ref|YP_008874166.1|	-	0.17	11.4	5.1	0.2	11.2	5.1	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fungal_TACC	PF12709.7	gi|564287975|ref|YP_008874166.1|	-	0.18	12.2	11.7	0.26	11.8	3.0	2.5	1	1	1	2	2	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF641	PF04859.12	gi|564287975|ref|YP_008874166.1|	-	0.22	11.9	9.9	0.25	11.7	9.4	1.4	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
MAT1	PF06391.13	gi|564287975|ref|YP_008874166.1|	-	0.23	11.3	11.2	0.28	11.0	11.2	1.1	1	0	0	1	1	1	0	CDK-activating	kinase	assembly	factor	MAT1
FapA	PF03961.13	gi|564287975|ref|YP_008874166.1|	-	0.25	9.9	5.4	0.29	9.7	5.4	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Fez1	PF06818.15	gi|564287975|ref|YP_008874166.1|	-	0.26	11.7	13.4	0.33	11.4	13.4	1.1	1	0	0	1	1	1	0	Fez1
TMPIT	PF07851.13	gi|564287975|ref|YP_008874166.1|	-	0.3	10.3	7.8	0.39	9.9	7.8	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
KxDL	PF10241.9	gi|564287975|ref|YP_008874166.1|	-	0.31	11.3	11.1	0.17	12.2	6.9	2.0	1	1	1	2	2	2	0	Uncharacterized	conserved	protein
Lectin_N	PF03954.14	gi|564287975|ref|YP_008874166.1|	-	0.35	10.6	5.1	0.64	9.8	5.1	1.5	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
Fmp27_WPPW	PF10359.9	gi|564287975|ref|YP_008874166.1|	-	0.72	8.6	9.7	0.84	8.4	9.7	1.0	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Pup	PF05639.11	gi|564287975|ref|YP_008874166.1|	-	0.72	10.8	7.0	0.88	10.5	5.6	2.0	1	1	1	2	2	1	0	Pup-like	protein
Laminin_II	PF06009.12	gi|564287975|ref|YP_008874166.1|	-	0.82	9.7	10.0	3.3	7.7	9.6	1.8	1	1	1	2	2	2	0	Laminin	Domain	II
TolA_bind_tri	PF16331.5	gi|564287975|ref|YP_008874166.1|	-	1.3	9.1	14.8	2.2	8.4	8.2	2.4	1	1	1	2	2	2	0	TolA	binding	protein	trimerisation
Bap31_Bap29_C	PF18035.1	gi|564287975|ref|YP_008874166.1|	-	1.4	9.0	10.6	6.1	6.9	10.2	2.2	1	1	1	2	2	2	0	Bap31/Bap29	cytoplasmic	coiled-coil	domain
DUF2570	PF10828.8	gi|564287975|ref|YP_008874166.1|	-	1.5	8.6	7.8	1.1	9.1	6.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2570)
PRKG1_interact	PF15898.5	gi|564287975|ref|YP_008874166.1|	-	2.5	9.1	17.6	7.9	7.4	17.7	1.9	1	1	1	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
ZapB	PF06005.12	gi|564287975|ref|YP_008874166.1|	-	2.6	8.6	23.1	1.1	9.8	14.0	2.3	1	1	1	2	2	2	0	Cell	division	protein	ZapB
CorA	PF01544.18	gi|564287975|ref|YP_008874166.1|	-	2.6	7.3	6.0	3.4	6.9	6.0	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
EOS1	PF12326.8	gi|564287975|ref|YP_008874166.1|	-	4	7.3	4.6	6.4	6.7	4.6	1.4	1	1	0	1	1	1	0	N-glycosylation	protein
Csm1_N	PF18504.1	gi|564287975|ref|YP_008874166.1|	-	4.9	7.6	15.7	8	6.9	4.7	2.3	1	1	1	2	2	2	0	Csm1	N-terminal	domain
APG6_N	PF17675.1	gi|564287975|ref|YP_008874166.1|	-	5.1	7.6	23.4	25	5.4	23.4	1.8	1	1	0	1	1	1	0	Apg6	coiled-coil	region
Presenilin	PF01080.17	gi|564287975|ref|YP_008874166.1|	-	5.4	5.7	5.7	6.1	5.5	5.7	1.1	1	0	0	1	1	1	0	Presenilin
NYD-SP28_assoc	PF14775.6	gi|564287975|ref|YP_008874166.1|	-	5.6	7.2	10.5	0.41	10.8	2.1	2.4	2	0	0	2	2	2	0	Sperm	tail	C-terminal	domain
MctB	PF11382.8	gi|564287975|ref|YP_008874166.1|	-	7.6	6.1	10.9	0.81	9.3	4.6	1.9	1	1	1	2	2	2	0	Copper	transport	outer	membrane	protein,	MctB
Macoilin	PF09726.9	gi|564287975|ref|YP_008874166.1|	-	7.7	4.9	14.1	9.4	4.7	14.1	1.0	1	0	0	1	1	1	0	Macoilin	family
Ax_dynein_light	PF10211.9	gi|564287975|ref|YP_008874166.1|	-	8.3	6.3	18.1	5.3	6.9	13.8	1.9	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
CENP-H	PF05837.12	gi|564287975|ref|YP_008874166.1|	-	9.3	6.7	18.4	1.1	9.7	9.2	2.1	1	1	1	2	2	2	0	Centromere	protein	H	(CENP-H)
Cnn_1N	PF07989.11	gi|564287975|ref|YP_008874166.1|	-	9.8	6.4	17.0	7.9	6.7	14.8	2.0	2	1	0	2	2	1	0	Centrosomin	N-terminal	motif	1
Spc24	PF08286.11	gi|564287975|ref|YP_008874166.1|	-	9.9	6.5	18.9	3.2	8.1	8.5	2.2	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
Phage_integrase	PF00589.22	gi|564287976|ref|YP_008874167.1|	-	1.7e-06	27.9	0.0	3.5e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
AAA_31	PF13614.6	gi|564287977|ref|YP_008874168.1|	-	5.7e-22	78.5	0.0	9.1e-22	77.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287977|ref|YP_008874168.1|	-	6.1e-16	58.6	0.0	1.3e-15	57.6	0.0	1.5	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|564287977|ref|YP_008874168.1|	-	4.9e-08	32.7	0.0	2.3e-06	27.2	0.0	2.1	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|564287977|ref|YP_008874168.1|	-	5e-07	29.2	0.0	1.1e-05	24.8	0.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|564287977|ref|YP_008874168.1|	-	8.5e-07	28.5	0.0	0.00025	20.4	0.0	2.5	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|564287977|ref|YP_008874168.1|	-	2.9e-06	27.0	0.0	5.3e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|564287977|ref|YP_008874168.1|	-	0.00082	18.9	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.6	gi|564287977|ref|YP_008874168.1|	-	0.024	14.2	0.2	0.08	12.5	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
CLP1_P	PF16575.5	gi|564287977|ref|YP_008874168.1|	-	0.097	12.5	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_24	PF13479.6	gi|564287977|ref|YP_008874168.1|	-	0.12	12.0	0.1	0.54	10.0	0.0	2.1	2	2	0	2	2	2	0	AAA	domain
DUF2999	PF11212.8	gi|564287978|ref|YP_008874169.1|	-	0.13	12.5	0.0	0.53	10.6	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2999)
IclR	PF01614.18	gi|564287979|ref|YP_008874171.1|	-	2.6e-36	124.3	0.1	6.4e-36	123.0	0.1	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564287979|ref|YP_008874171.1|	-	1.6e-07	31.0	0.0	3.6e-07	29.9	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287979|ref|YP_008874171.1|	-	9.9e-07	28.2	0.0	1.9e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|564287979|ref|YP_008874171.1|	-	5.5e-05	23.1	0.0	0.00034	20.5	0.0	2.2	2	1	1	3	3	3	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|564287979|ref|YP_008874171.1|	-	0.00022	21.1	0.0	0.00085	19.2	0.0	2.0	1	1	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564287979|ref|YP_008874171.1|	-	0.00053	19.8	0.0	0.0011	18.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|564287979|ref|YP_008874171.1|	-	0.0022	17.9	0.0	0.019	14.9	0.0	2.4	1	1	1	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|564287979|ref|YP_008874171.1|	-	0.0027	18.1	0.1	0.011	16.2	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|564287979|ref|YP_008874171.1|	-	0.0035	17.3	0.1	0.013	15.5	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|564287979|ref|YP_008874171.1|	-	0.0035	17.4	0.0	0.01	15.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
ANAPC2	PF08672.11	gi|564287979|ref|YP_008874171.1|	-	0.0036	17.8	0.0	0.013	16.0	0.0	2.0	2	0	0	2	2	2	1	Anaphase	promoting	complex	(APC)	subunit	2
HTH_DeoR	PF08220.12	gi|564287979|ref|YP_008874171.1|	-	0.064	13.0	0.1	0.16	11.7	0.1	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
PqqD	PF05402.12	gi|564287979|ref|YP_008874171.1|	-	0.071	13.4	0.1	5.2	7.5	0.0	2.6	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
HTH_10	PF04967.12	gi|564287979|ref|YP_008874171.1|	-	0.093	12.6	0.0	0.58	10.0	0.0	2.3	1	1	1	2	2	2	0	HTH	DNA	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|564287979|ref|YP_008874171.1|	-	0.097	12.8	0.1	0.64	10.2	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
TAF8_C	PF10406.9	gi|564287979|ref|YP_008874171.1|	-	0.11	13.1	0.7	4.3	8.0	0.2	2.7	2	0	0	2	2	2	0	Transcription	factor	TFIID	complex	subunit	8	C-term
Rrf2	PF02082.20	gi|564287979|ref|YP_008874171.1|	-	0.12	12.8	0.0	0.4	11.1	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
Na_H_antiporter	PF03553.14	gi|564287980|ref|YP_008874172.1|	-	4.8e-55	186.9	45.9	1.2e-50	172.5	26.0	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Reticulon	PF02453.17	gi|564287980|ref|YP_008874172.1|	-	0.12	12.3	3.9	0.32	10.9	0.0	3.0	3	0	0	3	3	3	0	Reticulon
DUF4864	PF16156.5	gi|564287981|ref|YP_008874173.1|	-	8e-10	39.3	0.0	1.3e-09	38.6	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4864)
DUF3592	PF12158.8	gi|564287983|ref|YP_008874175.1|	-	9e-26	90.7	9.6	2.8e-25	89.1	9.4	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3592)
DUF3318	PF11780.8	gi|564287983|ref|YP_008874175.1|	-	0.017	15.0	0.0	0.84	9.6	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3318)
DUF2189	PF09955.9	gi|564287983|ref|YP_008874175.1|	-	0.089	13.0	2.6	0.089	13.0	0.9	1.8	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2189)
Hydantoinase_B	PF02538.14	gi|564287984|ref|YP_008874176.1|	-	2.2e-202	673.1	2.9	2.4e-202	672.9	2.9	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|564287985|ref|YP_008874177.1|	-	1.4e-98	329.7	11.2	3.3e-98	328.5	5.3	2.3	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|564287985|ref|YP_008874177.1|	-	8.4e-51	172.2	1.9	4e-50	170.0	0.2	2.3	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|564287985|ref|YP_008874177.1|	-	0.0026	16.4	5.7	0.026	13.1	0.4	2.6	3	0	0	3	3	3	2	MutL	protein
FtsA	PF14450.6	gi|564287985|ref|YP_008874177.1|	-	0.45	11.0	2.8	3.2	8.2	0.3	2.8	2	1	0	2	2	2	0	Cell	division	protein	FtsA
Nramp	PF01566.18	gi|564287986|ref|YP_008874178.1|	-	2e-97	326.4	24.4	2.5e-97	326.1	24.4	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
LPD14	PF18827.1	gi|564287986|ref|YP_008874178.1|	-	0.16	12.3	2.4	37	4.6	0.1	3.7	2	2	2	4	4	4	0	Large	polyvalent	protein-associated	domain	14
RHH_1	PF01402.21	gi|564287987|ref|YP_008874179.1|	-	6e-11	41.9	1.4	9.9e-11	41.2	0.2	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|564287987|ref|YP_008874179.1|	-	5.5e-05	23.0	0.1	0.00014	21.8	0.1	1.7	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
PSK_trans_fac	PF07704.11	gi|564287987|ref|YP_008874179.1|	-	0.003	18.3	0.5	0.015	16.0	0.2	2.0	1	1	1	2	2	2	1	Rv0623-like	transcription	factor
PUB	PF09409.10	gi|564287987|ref|YP_008874179.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	PUB	domain
TraY	PF05509.11	gi|564287987|ref|YP_008874179.1|	-	0.027	14.5	0.3	0.1	12.7	0.1	1.9	2	0	0	2	2	2	0	TraY	domain
RHH_5	PF07878.11	gi|564287987|ref|YP_008874179.1|	-	0.074	13.0	0.1	0.18	11.7	0.1	1.7	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
ELFV_dehydrog	PF00208.21	gi|564287988|ref|YP_008874180.1|	-	7.7e-72	241.9	0.1	9.9e-72	241.6	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|564287988|ref|YP_008874180.1|	-	6.6e-53	178.0	0.0	1e-52	177.4	0.0	1.3	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|564287988|ref|YP_008874180.1|	-	0.00064	19.1	0.1	0.0013	18.2	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Oxidored_nitro	PF00148.19	gi|564287988|ref|YP_008874180.1|	-	0.0016	17.3	0.0	0.0022	16.8	0.0	1.2	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
IlvN	PF07991.12	gi|564287988|ref|YP_008874180.1|	-	0.028	14.0	0.1	0.045	13.3	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AlaDh_PNT_C	PF01262.21	gi|564287988|ref|YP_008874180.1|	-	0.042	13.1	0.1	0.074	12.3	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
BAT	PF15915.5	gi|564287989|ref|YP_008874181.1|	-	7.8e-37	126.6	9.3	7.8e-37	126.6	9.3	2.8	3	0	0	3	3	3	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|564287989|ref|YP_008874181.1|	-	4.3e-26	91.8	5.0	6.1e-19	68.7	0.1	3.4	4	0	0	4	4	4	2	GAF	domain
HTH_10	PF04967.12	gi|564287989|ref|YP_008874181.1|	-	4.3e-18	64.8	0.0	1.4e-17	63.2	0.0	2.0	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_4	PF08448.10	gi|564287989|ref|YP_008874181.1|	-	2.2e-13	50.4	4.3	3.4e-09	36.9	0.7	3.7	3	0	0	3	3	3	2	PAS	fold
GAF_3	PF13492.6	gi|564287989|ref|YP_008874181.1|	-	4.8e-13	49.6	0.2	9e-05	22.8	0.0	3.5	3	0	0	3	3	3	2	GAF	domain
Response_reg	PF00072.24	gi|564287989|ref|YP_008874181.1|	-	3.5e-10	40.0	0.1	1.7e-09	37.8	0.0	2.2	2	0	0	2	2	2	1	Response	regulator	receiver	domain
GAF	PF01590.26	gi|564287989|ref|YP_008874181.1|	-	5.5e-09	36.8	1.5	0.0011	19.7	0.0	3.4	3	0	0	3	3	3	2	GAF	domain
PAS_9	PF13426.7	gi|564287989|ref|YP_008874181.1|	-	8e-09	35.7	1.7	2.7e-05	24.3	0.0	3.5	3	0	0	3	3	3	2	PAS	domain
PAS	PF00989.25	gi|564287989|ref|YP_008874181.1|	-	8.7e-06	25.7	5.6	0.047	13.7	0.1	3.7	4	0	0	4	4	4	2	PAS	fold
PAS_8	PF13188.7	gi|564287989|ref|YP_008874181.1|	-	0.062	13.3	0.4	0.9	9.6	0.1	3.1	3	0	0	3	3	3	0	PAS	domain
PAS_7	PF12860.7	gi|564287989|ref|YP_008874181.1|	-	0.36	11.0	7.3	0.56	10.4	0.0	4.2	4	2	0	4	4	4	0	PAS	fold
zf-C2HC5	PF06221.13	gi|564287990|ref|YP_008874182.1|	-	0.00027	20.8	0.2	0.0003	20.7	0.2	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
DZR	PF12773.7	gi|564287990|ref|YP_008874182.1|	-	0.002	18.1	1.4	0.0022	18.0	1.4	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF1272	PF06906.11	gi|564287990|ref|YP_008874182.1|	-	0.0083	16.2	1.0	0.0093	16.0	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
Zn-ribbon_8	PF09723.10	gi|564287990|ref|YP_008874182.1|	-	0.01	15.9	3.3	0.018	15.1	3.3	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|564287990|ref|YP_008874182.1|	-	0.015	14.7	1.6	0.024	14.0	1.6	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|564287990|ref|YP_008874182.1|	-	0.024	14.8	0.4	0.027	14.6	0.4	1.1	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|564287990|ref|YP_008874182.1|	-	0.069	13.2	1.0	0.071	13.1	1.0	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_pol_N	PF01194.17	gi|564287990|ref|YP_008874182.1|	-	0.11	12.8	1.0	0.16	12.3	1.0	1.4	1	1	0	1	1	1	0	RNA	polymerases	N	/	8	kDa	subunit
YhfH	PF14149.6	gi|564287990|ref|YP_008874182.1|	-	0.15	12.0	5.2	2.6	8.1	3.8	2.1	1	1	1	2	2	2	0	YhfH-like	protein
ELFV_dehydrog	PF00208.21	gi|564287991|ref|YP_008874183.1|	-	3.9e-71	239.6	0.1	4.8e-71	239.3	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|564287991|ref|YP_008874183.1|	-	1.5e-56	189.9	0.0	2.4e-56	189.2	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|564287991|ref|YP_008874183.1|	-	0.0065	15.9	0.0	0.011	15.1	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|564287991|ref|YP_008874183.1|	-	0.017	14.7	0.0	0.031	13.8	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AdoHcyase_NAD	PF00670.21	gi|564287991|ref|YP_008874183.1|	-	0.13	12.4	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Gp_dh_N	PF00044.24	gi|564287991|ref|YP_008874183.1|	-	0.18	12.2	0.0	0.51	10.7	0.0	1.9	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
PAS_4	PF08448.10	gi|564287992|ref|YP_008874184.1|	-	1.6e-52	176.4	15.5	4e-14	52.8	0.0	7.0	5	3	0	5	5	5	5	PAS	fold
PAS	PF00989.25	gi|564287992|ref|YP_008874184.1|	-	9.3e-37	125.5	4.5	5.4e-17	61.8	0.0	5.6	5	1	0	5	5	5	4	PAS	fold
PAS_9	PF13426.7	gi|564287992|ref|YP_008874184.1|	-	2.5e-31	108.0	3.7	2.1e-12	47.2	0.0	6.0	6	0	0	6	6	6	4	PAS	domain
PAS_8	PF13188.7	gi|564287992|ref|YP_008874184.1|	-	4e-20	71.4	1.7	1.6e-06	28.0	0.0	5.8	6	0	0	6	6	5	4	PAS	domain
PAS_3	PF08447.12	gi|564287992|ref|YP_008874184.1|	-	1.2e-19	70.3	0.4	2.3e-09	37.4	0.1	3.8	4	0	0	4	4	4	2	PAS	fold
GAF_2	PF13185.6	gi|564287992|ref|YP_008874184.1|	-	1.1e-17	64.6	12.2	7.2e-10	39.3	0.8	5.3	6	0	0	6	6	6	2	GAF	domain
GAF_3	PF13492.6	gi|564287992|ref|YP_008874184.1|	-	3.5e-17	63.0	0.1	1.5e-09	38.2	0.0	4.3	4	0	0	4	4	4	2	GAF	domain
Response_reg	PF00072.24	gi|564287992|ref|YP_008874184.1|	-	9.1e-15	54.8	0.2	3.1e-14	53.1	0.0	1.9	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|564287992|ref|YP_008874184.1|	-	1.1e-14	54.9	0.0	2.5e-14	53.7	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564287992|ref|YP_008874184.1|	-	5.3e-13	48.8	0.4	5.3e-13	48.8	0.4	3.9	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|564287992|ref|YP_008874184.1|	-	6.7e-09	36.5	0.1	9.7e-07	29.5	0.0	3.6	3	0	0	3	3	3	1	GAF	domain
PAS_10	PF13596.6	gi|564287992|ref|YP_008874184.1|	-	0.066	13.8	0.0	1.4	9.6	0.0	3.1	3	0	0	3	3	3	0	PAS	domain
MCU	PF04678.13	gi|564287992|ref|YP_008874184.1|	-	0.67	10.0	2.3	1.3	9.0	0.4	2.6	2	1	1	3	3	3	0	Mitochondrial	calcium	uniporter
Response_reg	PF00072.24	gi|564287993|ref|YP_008874185.1|	-	3.7e-23	81.8	0.0	9.4e-23	80.5	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|564287993|ref|YP_008874185.1|	-	1.8e-18	67.1	1.4	4e-18	65.9	0.1	2.2	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|564287993|ref|YP_008874185.1|	-	3.4e-18	66.3	1.7	1.3e-17	64.4	0.1	2.7	3	1	0	3	3	3	1	GAF	domain
PAS_4	PF08448.10	gi|564287993|ref|YP_008874185.1|	-	4.2e-16	59.2	0.0	8.8e-16	58.1	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|564287993|ref|YP_008874185.1|	-	2.8e-14	52.9	1.2	2.8e-14	52.9	1.2	3.4	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|564287993|ref|YP_008874185.1|	-	1.1e-10	41.7	0.0	3.1e-10	40.2	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|564287993|ref|YP_008874185.1|	-	3.3e-10	40.0	0.0	1e-09	38.4	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.26	gi|564287993|ref|YP_008874185.1|	-	1.5e-09	38.6	0.0	2.1e-08	34.8	0.0	2.6	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|564287993|ref|YP_008874185.1|	-	1.5e-07	31.8	0.0	5.6e-07	30.0	0.0	2.0	2	0	0	2	2	2	1	GAF	domain
PAS_3	PF08447.12	gi|564287993|ref|YP_008874185.1|	-	1.5e-06	28.4	0.0	4.8e-06	26.8	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564287993|ref|YP_008874185.1|	-	6.7e-05	22.8	0.0	0.00028	20.8	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564287993|ref|YP_008874185.1|	-	0.023	14.6	0.1	0.023	14.6	0.1	2.7	3	0	0	3	3	3	0	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|564287993|ref|YP_008874185.1|	-	0.026	14.4	0.0	0.062	13.1	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TBCA	PF02970.16	gi|564287993|ref|YP_008874185.1|	-	0.094	13.1	0.3	0.33	11.3	0.3	1.9	1	0	0	1	1	1	0	Tubulin	binding	cofactor	A
Abhydrolase_6	PF12697.7	gi|564287994|ref|YP_008874186.1|	-	7.8e-20	72.4	4.1	9.4e-20	72.2	4.1	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|564287994|ref|YP_008874186.1|	-	1.3e-09	38.1	0.0	2.7e-09	37.0	0.0	1.5	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564287994|ref|YP_008874186.1|	-	0.0013	18.0	0.0	0.0018	17.6	0.0	1.1	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_5	PF12695.7	gi|564287994|ref|YP_008874186.1|	-	0.0045	16.8	0.0	0.0087	15.8	0.0	1.5	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
PGAP1	PF07819.13	gi|564287994|ref|YP_008874186.1|	-	0.15	11.7	0.0	0.21	11.3	0.0	1.2	1	0	0	1	1	1	0	PGAP1-like	protein
Peripla_BP_2	PF01497.18	gi|564288292|ref|YP_008874187.1|	-	3.1e-12	46.6	0.0	5.4e-12	45.8	0.0	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
IMPDH	PF00478.25	gi|564287995|ref|YP_008874188.1|	-	7.5e-118	393.5	6.9	8.8e-118	393.3	6.9	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.15	gi|564287995|ref|YP_008874188.1|	-	8.1e-09	35.3	13.2	0.00037	20.0	0.1	2.4	1	1	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|564287995|ref|YP_008874188.1|	-	8.1e-07	28.4	10.1	1.7e-06	27.3	10.1	1.6	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|564287995|ref|YP_008874188.1|	-	5.8e-06	25.9	1.8	0.00019	21.0	0.1	2.3	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
Glu_synthase	PF01645.17	gi|564287995|ref|YP_008874188.1|	-	0.0017	17.6	3.9	0.0017	17.6	3.9	2.7	3	0	0	3	3	3	1	Conserved	region	in	glutamate	synthase
TMP-TENI	PF02581.17	gi|564287995|ref|YP_008874188.1|	-	0.009	15.4	5.7	0.017	14.5	5.2	1.7	1	1	1	2	2	2	1	Thiamine	monophosphate	synthase
DHO_dh	PF01180.21	gi|564287995|ref|YP_008874188.1|	-	0.012	14.9	0.7	0.012	14.9	0.7	1.7	3	0	0	3	3	3	0	Dihydroorotate	dehydrogenase
Aldolase	PF01081.19	gi|564287995|ref|YP_008874188.1|	-	0.066	12.6	3.1	0.16	11.4	1.1	2.2	1	1	1	2	2	2	0	KDPG	and	KHG	aldolase
DUF934	PF06073.12	gi|564287996|ref|YP_008874189.1|	-	0.015	15.2	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF934)
DUF969	PF06149.12	gi|564287996|ref|YP_008874189.1|	-	0.026	14.0	0.1	0.028	13.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF969)
Molybdopterin	PF00384.22	gi|564287997|ref|YP_008874190.1|	-	1.6e-80	271.2	0.0	1.9e-80	270.9	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564287997|ref|YP_008874190.1|	-	3.6e-32	110.7	0.0	7.6e-32	109.6	0.0	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|564287997|ref|YP_008874190.1|	-	1.1e-05	25.3	4.8	1.4e-05	25.0	3.1	2.0	2	1	0	2	2	2	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TPP_enzyme_M	PF00205.22	gi|564287997|ref|YP_008874190.1|	-	0.028	14.2	0.3	5	6.9	0.0	2.9	3	0	0	3	3	3	0	Thiamine	pyrophosphate	enzyme,	central	domain
zf-ribbon_3	PF13248.6	gi|564287997|ref|YP_008874190.1|	-	0.043	13.2	0.3	0.15	11.6	0.2	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
NosD	PF05048.13	gi|564287998|ref|YP_008874191.1|	-	3.3e-23	82.2	4.7	1.3e-22	80.3	1.3	2.1	1	1	1	2	2	2	1	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|564287998|ref|YP_008874191.1|	-	1.4e-14	54.3	12.7	7.7e-11	42.1	2.6	3.0	1	1	1	2	2	2	2	Right	handed	beta	helix	region
NosL	PF05573.12	gi|564287998|ref|YP_008874191.1|	-	1.7e-13	51.1	0.0	3e-13	50.2	0.0	1.4	1	0	0	1	1	1	1	NosL
DUF1565	PF07602.11	gi|564287998|ref|YP_008874191.1|	-	0.00043	19.7	13.6	0.076	12.3	13.6	2.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1565)
ABC_tran	PF00005.27	gi|564287999|ref|YP_008874192.1|	-	6.7e-28	97.9	0.0	9e-28	97.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287999|ref|YP_008874192.1|	-	1.6e-17	64.3	0.1	4.4e-09	36.6	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287999|ref|YP_008874192.1|	-	2.5e-05	23.8	0.0	0.046	13.1	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564287999|ref|YP_008874192.1|	-	7.7e-05	22.6	0.0	0.0029	17.4	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287999|ref|YP_008874192.1|	-	0.00053	19.7	0.0	0.0011	18.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564287999|ref|YP_008874192.1|	-	0.00094	19.7	0.0	0.0013	19.3	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564287999|ref|YP_008874192.1|	-	0.012	15.5	0.1	0.026	14.4	0.1	1.5	2	0	0	2	2	2	0	RsgA	GTPase
AAA_33	PF13671.6	gi|564287999|ref|YP_008874192.1|	-	0.013	15.6	0.0	0.019	15.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|564287999|ref|YP_008874192.1|	-	0.015	15.7	0.0	0.026	14.9	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
Adeno_IVa2	PF02456.15	gi|564287999|ref|YP_008874192.1|	-	0.033	13.0	0.0	0.045	12.5	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_13	PF13166.6	gi|564287999|ref|YP_008874192.1|	-	0.046	12.4	0.0	2.7	6.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564287999|ref|YP_008874192.1|	-	0.19	11.8	0.1	0.37	10.9	0.1	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
cobW	PF02492.19	gi|564287999|ref|YP_008874192.1|	-	0.23	11.0	0.3	0.42	10.2	0.3	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC2_membrane_2	PF12679.7	gi|564288000|ref|YP_008874193.1|	-	2.5e-07	30.3	21.1	1.2e-05	24.8	21.1	2.2	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|564288000|ref|YP_008874193.1|	-	0.0026	17.2	7.2	0.0026	17.2	7.2	2.2	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|564288000|ref|YP_008874193.1|	-	0.18	10.9	16.2	0.038	13.1	12.7	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
HrcA_DNA-bdg	PF03444.15	gi|564288000|ref|YP_008874193.1|	-	0.2	11.3	0.2	0.43	10.3	0.2	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_20	PF12840.7	gi|564288001|ref|YP_008874194.1|	-	4.4e-15	55.5	3.2	4.4e-09	36.3	1.0	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288001|ref|YP_008874194.1|	-	9.4e-13	47.5	0.0	2.7e-08	33.3	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564288001|ref|YP_008874194.1|	-	1.3e-11	44.2	0.1	5.9e-07	29.2	0.1	2.3	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564288001|ref|YP_008874194.1|	-	2.4e-08	33.7	4.9	5.7e-06	26.1	0.7	3.0	3	2	0	3	3	3	2	MarR	family
TrmB	PF01978.19	gi|564288001|ref|YP_008874194.1|	-	2.8e-08	33.5	0.0	4.6e-05	23.2	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|564288001|ref|YP_008874194.1|	-	2.6e-06	27.3	0.1	2.8e-05	24.0	0.1	2.1	2	0	0	2	2	2	1	HTH	domain
Rrf2	PF02082.20	gi|564288001|ref|YP_008874194.1|	-	6.3e-05	23.2	0.1	0.0051	17.1	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_10	PF04967.12	gi|564288001|ref|YP_008874194.1|	-	6.6e-05	22.6	0.1	0.22	11.4	0.0	2.7	2	0	0	2	2	2	2	HTH	DNA	binding	domain
MarR	PF01047.22	gi|564288001|ref|YP_008874194.1|	-	6.9e-05	22.7	0.0	0.00038	20.3	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564288001|ref|YP_008874194.1|	-	0.00011	22.1	0.4	0.00023	21.1	0.2	1.8	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288001|ref|YP_008874194.1|	-	0.0002	21.1	1.2	0.0029	17.4	0.8	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.6	gi|564288001|ref|YP_008874194.1|	-	0.00022	21.3	0.0	0.16	12.2	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|564288001|ref|YP_008874194.1|	-	0.00066	19.8	0.0	0.18	12.0	0.0	2.4	2	1	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
RP-C	PF03428.13	gi|564288001|ref|YP_008874194.1|	-	0.0055	16.4	0.0	0.21	11.3	0.0	2.4	2	0	0	2	2	2	1	Replication	protein	C	N-terminal	domain
HTH_CodY	PF08222.11	gi|564288001|ref|YP_008874194.1|	-	0.0074	15.8	0.0	0.029	13.9	0.0	1.9	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288001|ref|YP_008874194.1|	-	0.0092	15.7	0.0	0.036	13.8	0.0	1.9	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
FaeA	PF04703.12	gi|564288001|ref|YP_008874194.1|	-	0.01	16.2	0.1	1.9	8.9	0.0	2.2	2	0	0	2	2	2	1	FaeA-like	protein
AbiEi_4	PF13338.6	gi|564288001|ref|YP_008874194.1|	-	0.014	15.5	0.2	9	6.5	0.1	2.6	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
Phage_CI_repr	PF07022.13	gi|564288001|ref|YP_008874194.1|	-	0.02	14.9	0.0	0.12	12.5	0.0	2.0	2	0	0	2	2	2	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288001|ref|YP_008874194.1|	-	0.054	14.0	0.5	3.6	8.1	0.2	2.3	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
DprA_WH	PF17782.1	gi|564288001|ref|YP_008874194.1|	-	0.062	13.4	7.2	0.44	10.7	1.0	3.4	3	1	0	3	3	3	0	DprA	winged	helix	domain
Glyco_transf_56	PF07429.11	gi|564288001|ref|YP_008874194.1|	-	0.065	12.3	0.0	0.078	12.1	0.0	1.0	1	0	0	1	1	1	0	4-alpha-L-fucosyltransferase	glycosyl	transferase	group	56
RPA_C	PF08784.11	gi|564288001|ref|YP_008874194.1|	-	0.086	13.5	0.0	6.5	7.5	0.0	2.2	1	1	1	2	2	2	0	Replication	protein	A	C	terminal
NosL	PF05573.12	gi|564288002|ref|YP_008874195.1|	-	2e-43	147.9	0.1	2.4e-43	147.6	0.1	1.1	1	0	0	1	1	1	1	NosL
RRM_1	PF00076.22	gi|564288002|ref|YP_008874195.1|	-	0.0077	16.0	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
VATC	PF18716.1	gi|564288002|ref|YP_008874195.1|	-	0.0091	15.8	3.5	0.088	12.7	1.4	2.3	2	0	0	2	2	2	1	Vms1-associating	treble	clef	domain
LysE	PF01810.18	gi|564288003|ref|YP_008874196.1|	-	0.096	12.1	4.9	0.12	11.8	4.9	1.2	1	0	0	1	1	1	0	LysE	type	translocator
7TMR-DISM_7TM	PF07695.11	gi|564288003|ref|YP_008874196.1|	-	0.36	10.7	7.2	0.4	10.5	7.2	1.0	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
MARVEL	PF01284.23	gi|564288003|ref|YP_008874196.1|	-	1.5	8.9	6.2	6.1	6.9	6.2	1.8	1	1	0	1	1	1	0	Membrane-associating	domain
DUF1772	PF08592.11	gi|564288003|ref|YP_008874196.1|	-	2.6	8.4	6.8	5.2	7.4	6.8	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
Usp	PF00582.26	gi|564288004|ref|YP_008874197.1|	-	3.8e-30	105.2	2.2	4.2e-30	105.1	2.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|564288004|ref|YP_008874197.1|	-	0.00046	20.2	0.0	0.00057	19.9	0.0	1.1	1	0	0	1	1	1	1	DNA	photolyase
Pyridox_ox_2	PF12900.7	gi|564288005|ref|YP_008874198.1|	-	1.3e-17	64.2	0.0	1.4e-17	64.0	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288005|ref|YP_008874198.1|	-	0.012	15.8	0.0	0.016	15.4	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF2267	PF10025.9	gi|564288006|ref|YP_008874199.1|	-	3e-36	124.4	0.7	4.1e-36	123.9	0.7	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
Usp	PF00582.26	gi|564288007|ref|YP_008874200.1|	-	6.4e-67	224.4	4.4	4.2e-33	114.8	0.9	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
FR47	PF08445.10	gi|564288007|ref|YP_008874200.1|	-	0.0012	18.7	0.2	0.61	10.1	0.0	2.6	2	0	0	2	2	2	2	FR47-like	protein
AP_endonuc_2	PF01261.24	gi|564288007|ref|YP_008874200.1|	-	0.0079	15.7	3.1	0.24	10.8	0.1	2.5	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
Pyridox_ox_2	PF12900.7	gi|564288008|ref|YP_008874201.1|	-	1.3e-17	64.1	0.0	1.5e-17	63.9	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288008|ref|YP_008874201.1|	-	0.0058	16.8	0.0	0.0082	16.3	0.0	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
E1-E2_ATPase	PF00122.20	gi|564288009|ref|YP_008874202.1|	-	2.8e-56	189.9	2.7	2.8e-56	189.9	2.7	2.6	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|564288009|ref|YP_008874202.1|	-	1.4e-38	132.4	1.1	1.4e-38	132.4	1.1	1.9	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|564288009|ref|YP_008874202.1|	-	4.1e-28	99.1	3.9	8.7e-28	98.0	3.9	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|564288009|ref|YP_008874202.1|	-	4.8e-21	74.6	0.0	3.2e-20	72.0	0.0	2.1	2	0	0	2	2	2	1	Cation	transport	ATPase	(P-type)
Cation_ATPase_N	PF00690.26	gi|564288009|ref|YP_008874202.1|	-	1.5e-13	50.2	0.0	3e-13	49.2	0.0	1.5	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|564288009|ref|YP_008874202.1|	-	1.1e-05	25.3	0.8	9.2e-05	22.3	0.6	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564288009|ref|YP_008874202.1|	-	0.0007	20.0	0.3	0.0014	19.1	0.3	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Pyr_redox_2	PF07992.14	gi|564288010|ref|YP_008874203.1|	-	4e-58	197.0	1.8	5.1e-58	196.6	1.8	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564288010|ref|YP_008874203.1|	-	1e-26	93.3	1.9	6.5e-21	74.7	0.4	3.4	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|564288010|ref|YP_008874203.1|	-	6.3e-13	48.9	0.0	3.4e-12	46.6	0.0	2.2	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|564288010|ref|YP_008874203.1|	-	1.6e-08	34.2	0.0	0.0035	16.6	0.0	2.4	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|564288010|ref|YP_008874203.1|	-	1.1e-06	28.8	0.9	0.012	15.9	0.0	3.5	4	0	0	4	4	4	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|564288010|ref|YP_008874203.1|	-	6.6e-06	25.5	10.8	0.22	10.6	0.4	4.1	1	1	3	4	4	4	3	FAD	binding	domain
HI0933_like	PF03486.14	gi|564288010|ref|YP_008874203.1|	-	2.3e-05	23.3	0.1	0.17	10.6	0.0	3.6	3	1	1	4	4	4	2	HI0933-like	protein
Amino_oxidase	PF01593.24	gi|564288010|ref|YP_008874203.1|	-	0.00015	21.2	0.2	1.8	7.8	0.0	3.0	3	0	0	3	3	3	2	Flavin	containing	amine	oxidoreductase
Thi4	PF01946.17	gi|564288010|ref|YP_008874203.1|	-	0.025	13.8	0.1	0.35	10.1	0.0	2.6	3	0	0	3	3	3	0	Thi4	family
Lycopene_cycl	PF05834.12	gi|564288010|ref|YP_008874203.1|	-	0.028	13.5	0.3	0.48	9.4	0.0	2.5	3	0	0	3	3	3	0	Lycopene	cyclase	protein
UDPG_MGDP_dh_N	PF03721.14	gi|564288010|ref|YP_008874203.1|	-	0.086	12.4	0.1	6.1	6.4	0.0	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|564288010|ref|YP_008874203.1|	-	0.099	12.5	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TauE	PF01925.19	gi|564288011|ref|YP_008874204.1|	-	7.1e-18	65.1	37.9	8.9e-18	64.8	37.9	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DrsE	PF02635.15	gi|564288012|ref|YP_008874205.1|	-	2.9e-09	37.3	0.0	3.3e-09	37.1	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Thioredoxin	PF00085.20	gi|564288013|ref|YP_008874206.1|	-	3.9e-27	94.2	0.0	4.4e-27	94.1	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288013|ref|YP_008874206.1|	-	8.8e-11	42.2	0.1	3.9e-09	36.9	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
TraF	PF13728.6	gi|564288013|ref|YP_008874206.1|	-	8e-07	29.1	0.0	9.8e-07	28.8	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.6	gi|564288013|ref|YP_008874206.1|	-	1.1e-05	25.4	0.0	1.7e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
DSBA	PF01323.20	gi|564288013|ref|YP_008874206.1|	-	2.3e-05	24.2	0.3	3.8e-05	23.5	0.1	1.5	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_8	PF13905.6	gi|564288013|ref|YP_008874206.1|	-	7.1e-05	23.1	0.0	0.44	10.9	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|564288013|ref|YP_008874206.1|	-	9.4e-05	22.2	0.0	0.00012	21.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_7	PF13899.6	gi|564288013|ref|YP_008874206.1|	-	0.0011	19.2	0.0	0.0023	18.0	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin-like
HyaE	PF07449.11	gi|564288013|ref|YP_008874206.1|	-	0.0018	18.2	0.0	0.0031	17.5	0.0	1.4	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
OST3_OST6	PF04756.13	gi|564288013|ref|YP_008874206.1|	-	0.0027	17.1	0.0	0.0033	16.8	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
DUF836	PF05768.14	gi|564288013|ref|YP_008874206.1|	-	0.0032	17.8	0.0	0.0043	17.4	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_5	PF13743.6	gi|564288013|ref|YP_008874206.1|	-	0.0056	16.4	0.0	0.013	15.2	0.0	1.6	1	1	1	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|564288013|ref|YP_008874206.1|	-	0.0069	16.6	0.0	0.012	15.9	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin
Redoxin	PF08534.10	gi|564288013|ref|YP_008874206.1|	-	0.012	15.3	0.1	1.3	8.7	0.1	2.0	1	1	1	2	2	2	0	Redoxin
AhpC-TSA	PF00578.21	gi|564288013|ref|YP_008874206.1|	-	0.013	15.4	0.0	0.55	10.2	0.0	2.0	1	1	1	2	2	2	0	AhpC/TSA	family
Thioredoxin_4	PF13462.6	gi|564288013|ref|YP_008874206.1|	-	0.065	13.4	0.0	0.14	12.3	0.0	1.5	1	1	1	2	2	2	0	Thioredoxin
TrbC_Ftype	PF09673.10	gi|564288013|ref|YP_008874206.1|	-	0.17	12.0	0.0	0.23	11.5	0.0	1.2	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
TrmB	PF01978.19	gi|564288014|ref|YP_008874207.1|	-	3.8e-18	65.1	0.0	5.2e-18	64.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564288014|ref|YP_008874207.1|	-	1.5e-07	31.1	0.1	3e-07	30.1	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|564288014|ref|YP_008874207.1|	-	1.8e-06	27.8	0.0	3.7e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564288014|ref|YP_008874207.1|	-	4.6e-06	26.5	0.0	8e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.16	gi|564288014|ref|YP_008874207.1|	-	8.6e-05	22.9	0.0	0.00011	22.6	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.7	gi|564288014|ref|YP_008874207.1|	-	0.00012	21.9	0.0	0.00038	20.3	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|564288014|ref|YP_008874207.1|	-	0.0003	20.8	0.2	0.00067	19.7	0.1	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288014|ref|YP_008874207.1|	-	0.0009	18.8	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
RuvB_C	PF05491.13	gi|564288014|ref|YP_008874207.1|	-	0.0011	18.8	0.0	0.0022	17.9	0.0	1.4	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
UMPH-1	PF05822.12	gi|564288014|ref|YP_008874207.1|	-	0.0028	17.2	0.1	0.0046	16.5	0.1	1.3	1	1	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
HTH_29	PF13551.6	gi|564288014|ref|YP_008874207.1|	-	0.016	15.2	0.0	0.03	14.3	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn	helix
GntR	PF00392.21	gi|564288014|ref|YP_008874207.1|	-	0.016	14.8	0.1	0.037	13.7	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.6	gi|564288014|ref|YP_008874207.1|	-	0.018	15.1	0.0	0.041	14.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|564288014|ref|YP_008874207.1|	-	0.03	14.0	0.1	0.11	12.2	0.0	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_Crp_2	PF13545.6	gi|564288014|ref|YP_008874207.1|	-	0.037	14.0	0.1	0.073	13.1	0.1	1.5	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
SMC_ScpB	PF04079.16	gi|564288014|ref|YP_008874207.1|	-	0.047	13.3	0.4	1.2	8.7	0.0	2.4	1	1	1	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_23	PF13384.6	gi|564288014|ref|YP_008874207.1|	-	0.047	13.5	0.0	0.12	12.2	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
Rrf2	PF02082.20	gi|564288014|ref|YP_008874207.1|	-	0.078	13.3	0.0	0.17	12.3	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
Dimerisation	PF08100.11	gi|564288014|ref|YP_008874207.1|	-	0.085	12.9	0.0	0.24	11.5	0.0	1.7	2	0	0	2	2	2	0	Dimerisation	domain
HTH_27	PF13463.6	gi|564288014|ref|YP_008874207.1|	-	0.15	12.6	0.0	0.24	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sulf_transp	PF04143.14	gi|564288015|ref|YP_008874208.1|	-	1e-07	31.8	9.0	1e-07	31.8	9.0	2.1	1	1	1	2	2	2	2	Sulphur	transport
Sulf_transp	PF04143.14	gi|564288016|ref|YP_008874209.1|	-	7.3e-14	52.0	11.9	1.1e-13	51.5	11.9	1.2	1	0	0	1	1	1	1	Sulphur	transport
Trp_oprn_chp	PF09534.10	gi|564288016|ref|YP_008874209.1|	-	0.026	14.3	0.7	0.026	14.3	0.7	1.9	2	1	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF4282	PF14110.6	gi|564288016|ref|YP_008874209.1|	-	1.8	9.3	8.0	0.63	10.8	3.3	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4282)
Lactamase_B	PF00753.27	gi|564288017|ref|YP_008874210.1|	-	1.3e-12	48.1	4.5	2.4e-12	47.3	4.5	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|564288017|ref|YP_008874210.1|	-	3.8e-10	40.2	0.0	6.8e-10	39.4	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|564288017|ref|YP_008874210.1|	-	0.00066	19.3	0.1	0.0013	18.3	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
TusA	PF01206.17	gi|564288018|ref|YP_008874211.1|	-	1.4e-21	76.1	0.0	1.6e-21	75.9	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|564288018|ref|YP_008874211.1|	-	0.029	14.2	0.1	0.057	13.3	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
DrsE_2	PF13686.6	gi|564288019|ref|YP_008874212.1|	-	7.2e-54	181.9	0.7	8.7e-54	181.6	0.7	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|564288019|ref|YP_008874212.1|	-	4.7e-07	30.2	0.0	2.1e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	DsrE/DsrF-like	family
aGPT-Pplase1	PF18723.1	gi|564288019|ref|YP_008874212.1|	-	0.04	13.3	0.0	0.053	13.0	0.0	1.2	1	0	0	1	1	1	0	alpha-glutamyl/putrescinyl	thymine	pyrophosphorylase	clade	1
DUF1641	PF07849.11	gi|564288020|ref|YP_008874213.1|	-	6.4e-16	58.0	0.3	1.5e-15	56.8	0.3	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Pyr_redox_2	PF07992.14	gi|564288021|ref|YP_008874214.1|	-	2.1e-22	79.7	0.0	1.1e-21	77.4	0.0	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|564288021|ref|YP_008874214.1|	-	0.002	18.1	0.2	0.24	11.4	0.0	2.6	3	0	0	3	3	3	1	FAD-NAD(P)-binding
Pribosyltran	PF00156.27	gi|564288021|ref|YP_008874214.1|	-	0.0076	15.8	0.0	0.02	14.4	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Pyr_redox	PF00070.27	gi|564288021|ref|YP_008874214.1|	-	0.0095	16.5	0.1	3.9	8.1	0.1	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
TusA	PF01206.17	gi|564288022|ref|YP_008874215.1|	-	9.7e-18	63.8	0.0	1.1e-17	63.6	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DSHCT	PF08148.12	gi|564288022|ref|YP_008874215.1|	-	0.017	14.8	0.0	0.02	14.5	0.0	1.1	1	0	0	1	1	1	0	DSHCT	(NUC185)	domain
Methyltransf_31	PF13847.6	gi|564288023|ref|YP_008874216.1|	-	2.7e-12	46.7	0.0	3.2e-12	46.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288023|ref|YP_008874216.1|	-	7e-12	45.9	0.0	9.9e-12	45.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288023|ref|YP_008874216.1|	-	2e-11	44.4	0.0	2.7e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288023|ref|YP_008874216.1|	-	6.8e-09	35.4	0.0	8.1e-09	35.2	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|564288023|ref|YP_008874216.1|	-	8.1e-08	32.9	0.0	1e-07	32.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|564288023|ref|YP_008874216.1|	-	7.5e-07	29.1	0.0	9.7e-07	28.7	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_23	PF13489.6	gi|564288023|ref|YP_008874216.1|	-	1.5e-05	24.9	0.0	1.9e-05	24.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288023|ref|YP_008874216.1|	-	1.7e-05	24.4	0.0	2.6e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|564288023|ref|YP_008874216.1|	-	0.00017	21.1	0.0	0.00022	20.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|564288023|ref|YP_008874216.1|	-	0.00017	21.4	0.0	0.00021	21.1	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Fibrillarin	PF01269.17	gi|564288023|ref|YP_008874216.1|	-	0.00042	19.5	0.0	0.0018	17.4	0.0	1.8	2	0	0	2	2	2	1	Fibrillarin
DUF938	PF06080.12	gi|564288023|ref|YP_008874216.1|	-	0.0014	18.4	0.0	0.0026	17.6	0.0	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF938)
Methyltransf_4	PF02390.17	gi|564288023|ref|YP_008874216.1|	-	0.0036	16.8	0.0	0.005	16.3	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_2	PF00891.18	gi|564288023|ref|YP_008874216.1|	-	0.054	12.8	0.0	0.069	12.4	0.0	1.1	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_32	PF13679.6	gi|564288023|ref|YP_008874216.1|	-	0.078	13.0	0.0	0.094	12.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|564288023|ref|YP_008874216.1|	-	0.081	12.9	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|564288023|ref|YP_008874216.1|	-	0.088	12.6	0.0	0.45	10.3	0.0	1.8	1	1	0	1	1	1	0	Hypothetical	methyltransferase
CMAS	PF02353.20	gi|564288023|ref|YP_008874216.1|	-	0.1	11.9	0.0	0.14	11.4	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DUF2892	PF11127.8	gi|564288024|ref|YP_008874217.1|	-	1.3e-16	60.3	7.7	1.6e-16	60.0	7.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
Chlorosome_CsmC	PF11098.8	gi|564288024|ref|YP_008874217.1|	-	0.014	15.4	2.8	0.015	15.3	2.8	1.0	1	0	0	1	1	1	0	Chlorosome	envelope	protein	C
MSP1b	PF03429.13	gi|564288024|ref|YP_008874217.1|	-	0.34	8.9	1.0	0.37	8.8	1.0	1.0	1	0	0	1	1	1	0	Major	surface	protein	1B
Peptidase_M20	PF01546.28	gi|564288025|ref|YP_008874218.1|	-	3.3e-40	138.0	0.2	5e-40	137.4	0.2	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|564288025|ref|YP_008874218.1|	-	2.3e-18	66.1	0.0	4.4e-18	65.2	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|564288025|ref|YP_008874218.1|	-	5.8e-10	39.2	0.1	1.1e-07	31.8	0.1	2.1	2	0	0	2	2	2	2	Peptidase	family	M28
Peptidase_M42	PF05343.14	gi|564288025|ref|YP_008874218.1|	-	0.005	15.9	0.1	2.8	6.9	0.0	2.3	2	0	0	2	2	2	2	M42	glutamyl	aminopeptidase
Thioredoxin	PF00085.20	gi|564288026|ref|YP_008874219.1|	-	2.1e-27	95.1	0.0	2.7e-27	94.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288026|ref|YP_008874219.1|	-	5.7e-12	46.1	0.1	1.4e-10	41.6	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|564288026|ref|YP_008874219.1|	-	4.1e-06	26.7	0.0	6.3e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_7	PF13899.6	gi|564288026|ref|YP_008874219.1|	-	4.2e-05	23.6	0.0	8.3e-05	22.7	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like
TraF	PF13728.6	gi|564288026|ref|YP_008874219.1|	-	4.9e-05	23.3	0.0	6.3e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_8	PF13905.6	gi|564288026|ref|YP_008874219.1|	-	6e-05	23.3	0.0	0.072	13.4	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
DSBA	PF01323.20	gi|564288026|ref|YP_008874219.1|	-	0.00011	22.1	0.2	0.00023	21.0	0.0	1.6	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_9	PF14595.6	gi|564288026|ref|YP_008874219.1|	-	0.00013	21.7	0.0	0.00017	21.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
HyaE	PF07449.11	gi|564288026|ref|YP_008874219.1|	-	0.0002	21.3	0.1	0.00035	20.5	0.0	1.5	2	0	0	2	2	1	1	Hydrogenase-1	expression	protein	HyaE
DUF836	PF05768.14	gi|564288026|ref|YP_008874219.1|	-	0.00072	19.9	0.0	0.0011	19.3	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
OST3_OST6	PF04756.13	gi|564288026|ref|YP_008874219.1|	-	0.004	16.5	0.0	0.005	16.2	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|564288026|ref|YP_008874219.1|	-	0.012	15.6	0.0	0.086	12.8	0.0	2.0	1	1	0	1	1	1	0	AhpC/TSA	family
Glutaredoxin	PF00462.24	gi|564288026|ref|YP_008874219.1|	-	0.012	15.8	0.0	0.025	14.8	0.0	1.6	1	0	0	1	1	1	0	Glutaredoxin
Redoxin	PF08534.10	gi|564288026|ref|YP_008874219.1|	-	0.029	14.1	0.1	0.41	10.3	0.1	2.0	1	1	1	2	2	2	0	Redoxin
Thioredoxin_5	PF13743.6	gi|564288026|ref|YP_008874219.1|	-	0.042	13.5	0.0	0.056	13.1	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin
DUF953	PF06110.11	gi|564288026|ref|YP_008874219.1|	-	0.056	13.1	0.4	0.54	9.9	0.4	2.1	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
KaiB	PF07689.12	gi|564288026|ref|YP_008874219.1|	-	0.15	11.8	0.0	0.23	11.2	0.0	1.2	1	0	0	1	1	1	0	KaiB	domain
DUF302	PF03625.14	gi|564288027|ref|YP_008874220.1|	-	6.4e-15	54.8	0.0	1e-14	54.1	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Methyltransf_11	PF08241.12	gi|564288028|ref|YP_008874221.1|	-	1e-16	61.4	0.0	1.7e-16	60.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288028|ref|YP_008874221.1|	-	4.3e-15	56.2	0.0	1e-14	55.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288028|ref|YP_008874221.1|	-	5.4e-08	32.8	0.0	1.3e-07	31.5	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288028|ref|YP_008874221.1|	-	4.6e-06	26.1	0.0	6e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
DREV	PF05219.12	gi|564288028|ref|YP_008874221.1|	-	4e-05	22.8	0.0	6.5e-05	22.1	0.0	1.3	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_23	PF13489.6	gi|564288028|ref|YP_008874221.1|	-	9.3e-05	22.3	0.0	0.00013	21.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288028|ref|YP_008874221.1|	-	0.0032	18.2	0.0	0.0068	17.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|564288028|ref|YP_008874221.1|	-	0.0092	16.1	0.0	0.016	15.3	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
RrnaAD	PF00398.20	gi|564288028|ref|YP_008874221.1|	-	0.073	12.1	0.0	0.086	11.9	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_8	PF05148.15	gi|564288028|ref|YP_008874221.1|	-	0.13	12.1	0.0	0.24	11.2	0.0	1.6	1	1	0	1	1	1	0	Hypothetical	methyltransferase
UreF	PF01730.16	gi|564288029|ref|YP_008874222.1|	-	3.2e-29	102.2	8.0	4.5e-29	101.7	8.0	1.2	1	0	0	1	1	1	1	UreF
UreE_N	PF02814.15	gi|564288030|ref|YP_008874223.1|	-	3.5e-11	42.5	2.2	3.5e-11	42.5	2.2	1.8	2	0	0	2	2	2	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.12	gi|564288030|ref|YP_008874223.1|	-	1.7e-05	25.2	0.6	3.1e-05	24.4	0.6	1.4	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
UreD	PF01774.17	gi|564288031|ref|YP_008874224.1|	-	3e-47	161.3	0.7	3.7e-47	161.0	0.7	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
cobW	PF02492.19	gi|564288032|ref|YP_008874225.1|	-	1.1e-31	109.8	0.0	1.3e-31	109.6	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.14	gi|564288032|ref|YP_008874225.1|	-	5.2e-09	36.1	0.0	8.5e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MeaB	PF03308.16	gi|564288032|ref|YP_008874225.1|	-	4.7e-07	29.1	1.0	2.1e-06	26.9	1.0	1.8	1	1	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ABC_tran	PF00005.27	gi|564288032|ref|YP_008874225.1|	-	0.0022	18.5	0.0	0.0022	18.5	0.0	1.4	1	1	0	1	1	1	1	ABC	transporter
RsgA_GTPase	PF03193.16	gi|564288032|ref|YP_008874225.1|	-	0.0026	17.7	0.1	1.4	8.8	0.0	2.5	3	0	0	3	3	3	2	RsgA	GTPase
AAA_18	PF13238.6	gi|564288032|ref|YP_008874225.1|	-	0.0079	16.7	0.0	0.012	16.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564288032|ref|YP_008874225.1|	-	0.012	15.4	0.0	0.015	15.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|564288032|ref|YP_008874225.1|	-	0.031	14.2	0.0	0.053	13.4	0.0	1.4	1	0	0	1	1	1	0	NTPase
TrwB_AAD_bind	PF10412.9	gi|564288032|ref|YP_008874225.1|	-	0.049	12.5	0.0	0.066	12.1	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
LpxK	PF02606.14	gi|564288032|ref|YP_008874225.1|	-	0.051	12.7	0.1	0.088	11.9	0.1	1.3	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
AAA_16	PF13191.6	gi|564288032|ref|YP_008874225.1|	-	0.081	13.3	0.0	0.1	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_26	PF13500.6	gi|564288032|ref|YP_008874225.1|	-	0.089	12.6	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|564288032|ref|YP_008874225.1|	-	0.13	11.9	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
NACHT	PF05729.12	gi|564288032|ref|YP_008874225.1|	-	0.13	12.2	0.1	0.21	11.5	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
KAP_NTPase	PF07693.14	gi|564288032|ref|YP_008874225.1|	-	0.14	11.3	0.0	0.14	11.3	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
T2SSE	PF00437.20	gi|564288032|ref|YP_008874225.1|	-	0.19	10.7	0.0	0.26	10.3	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Urease_gamma	PF00547.18	gi|564288033|ref|YP_008874226.1|	-	4.8e-42	142.3	0.0	5.5e-42	142.1	0.0	1.0	1	0	0	1	1	1	1	Urease,	gamma	subunit
Amidohydro_1	PF01979.20	gi|564288034|ref|YP_008874227.1|	-	1.8e-64	218.3	0.3	2.3e-64	217.9	0.3	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|564288034|ref|YP_008874227.1|	-	1.9e-49	167.0	2.7	2.3e-49	166.7	1.5	1.8	2	0	0	2	2	2	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_3	PF07969.11	gi|564288034|ref|YP_008874227.1|	-	3.9e-10	39.8	3.6	3.1e-07	30.2	0.2	2.6	1	1	0	2	2	2	2	Amidohydrolase	family
Urease_beta	PF00699.20	gi|564288035|ref|YP_008874228.1|	-	7.5e-45	151.0	0.1	1e-44	150.5	0.1	1.2	1	0	0	1	1	1	1	Urease	beta	subunit
Peripla_BP_6	PF13458.6	gi|564288036|ref|YP_008874230.1|	-	6e-68	230.0	0.6	7.4e-68	229.7	0.6	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564288036|ref|YP_008874230.1|	-	3.3e-66	223.8	0.1	4.1e-66	223.4	0.1	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|564288036|ref|YP_008874230.1|	-	0.0047	16.7	4.1	0.0093	15.8	4.1	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.16	gi|564288037|ref|YP_008874231.1|	-	5.9e-36	124.0	35.6	8.9e-36	123.4	35.6	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF2613	PF11021.8	gi|564288037|ref|YP_008874231.1|	-	0.95	9.6	0.0	0.95	9.6	0.0	5.4	6	1	1	7	7	7	0	Protein	of	unknown	function	(DUF2613)
BPD_transp_2	PF02653.16	gi|564288038|ref|YP_008874232.1|	-	8.2e-33	113.7	39.6	8.2e-33	113.7	39.6	1.4	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|564288039|ref|YP_008874233.1|	-	4.1e-31	108.3	0.0	6e-31	107.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288039|ref|YP_008874233.1|	-	7.2e-09	35.9	1.9	0.0011	18.9	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288039|ref|YP_008874233.1|	-	7.9e-07	28.7	0.3	0.00034	20.1	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|564288039|ref|YP_008874233.1|	-	2.6e-05	24.8	0.1	4.2e-05	24.1	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|564288039|ref|YP_008874233.1|	-	0.00011	21.9	0.0	0.00018	21.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288039|ref|YP_008874233.1|	-	0.00024	21.1	0.0	0.00051	20.0	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|564288039|ref|YP_008874233.1|	-	0.00053	19.7	0.0	0.00098	18.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
BCA_ABC_TP_C	PF12399.8	gi|564288039|ref|YP_008874233.1|	-	0.0039	17.1	0.2	0.0088	15.9	0.2	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_16	PF13191.6	gi|564288039|ref|YP_008874233.1|	-	0.0053	17.2	0.1	0.01	16.3	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|564288039|ref|YP_008874233.1|	-	0.0057	16.7	0.0	0.026	14.6	0.0	1.9	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|564288039|ref|YP_008874233.1|	-	0.0061	16.3	0.0	0.0081	15.9	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564288039|ref|YP_008874233.1|	-	0.0064	16.2	0.0	0.011	15.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564288039|ref|YP_008874233.1|	-	0.0066	16.7	0.1	0.019	15.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
GTP_EFTU	PF00009.27	gi|564288039|ref|YP_008874233.1|	-	0.019	14.5	0.0	0.03	13.9	0.0	1.3	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AAA_28	PF13521.6	gi|564288039|ref|YP_008874233.1|	-	0.22	11.8	1.7	2.6	8.3	0.1	2.5	2	1	1	3	3	3	0	AAA	domain
ABC_tran	PF00005.27	gi|564288040|ref|YP_008874234.1|	-	1.3e-34	119.7	0.0	2.2e-34	118.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288040|ref|YP_008874234.1|	-	3.2e-08	33.7	0.6	0.0017	18.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564288040|ref|YP_008874234.1|	-	9.7e-05	22.0	0.0	0.00019	21.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564288040|ref|YP_008874234.1|	-	0.0056	17.1	0.1	0.0098	16.3	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564288040|ref|YP_008874234.1|	-	0.0084	16.0	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|564288040|ref|YP_008874234.1|	-	0.0093	16.2	0.4	0.029	14.6	0.4	1.9	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|564288040|ref|YP_008874234.1|	-	0.013	14.7	0.2	0.03	13.5	0.1	1.5	2	0	0	2	2	2	0	NB-ARC	domain
AAA	PF00004.29	gi|564288040|ref|YP_008874234.1|	-	0.022	15.2	0.2	0.037	14.5	0.2	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|564288040|ref|YP_008874234.1|	-	0.022	14.7	1.1	0.05	13.5	0.2	2.0	2	1	1	3	3	3	0	NTPase
NACHT	PF05729.12	gi|564288040|ref|YP_008874234.1|	-	0.025	14.5	0.3	0.047	13.6	0.3	1.4	1	0	0	1	1	1	0	NACHT	domain
Mg_chelatase	PF01078.21	gi|564288040|ref|YP_008874234.1|	-	0.066	12.6	0.1	5.7	6.3	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
MobB	PF03205.14	gi|564288040|ref|YP_008874234.1|	-	0.089	12.7	0.1	0.16	11.8	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_14	PF13173.6	gi|564288040|ref|YP_008874234.1|	-	0.097	12.7	0.0	0.21	11.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|564288040|ref|YP_008874234.1|	-	0.12	12.1	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564288040|ref|YP_008874234.1|	-	0.14	12.0	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
MMR_HSR1	PF01926.23	gi|564288040|ref|YP_008874234.1|	-	0.15	12.2	0.3	0.33	11.0	0.2	1.6	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
SMC_N	PF02463.19	gi|564288040|ref|YP_008874234.1|	-	0.17	11.3	0.5	0.62	9.4	0.5	1.8	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
DLIC	PF05783.11	gi|564288040|ref|YP_008874234.1|	-	0.18	10.6	0.0	0.25	10.1	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_30	PF13604.6	gi|564288040|ref|YP_008874234.1|	-	0.33	10.6	2.0	0.28	10.9	0.5	1.8	2	1	0	2	2	2	0	AAA	domain
SNF	PF00209.18	gi|564288041|ref|YP_008874235.1|	-	1.3e-46	159.4	28.0	4.5e-26	91.6	13.0	2.1	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
MaoC_dehydratas	PF01575.19	gi|564288042|ref|YP_008874236.1|	-	8.5e-17	60.9	0.0	1.1e-16	60.5	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564288042|ref|YP_008874236.1|	-	6e-08	32.9	0.0	1.9e-07	31.3	0.0	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
COE1_HLH	PF16423.5	gi|564288042|ref|YP_008874236.1|	-	0.097	12.4	0.1	0.16	11.7	0.1	1.3	1	0	0	1	1	1	0	Transcription	factor	COE1	helix-loop-helix	domain
Creatininase	PF02633.14	gi|564288043|ref|YP_008874237.1|	-	5.1e-63	212.8	0.4	5.7e-63	212.6	0.4	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DUF393	PF04134.12	gi|564288044|ref|YP_008874238.1|	-	0.0019	19.5	0.0	0.002	19.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
TraF	PF13728.6	gi|564288044|ref|YP_008874238.1|	-	0.067	13.0	0.0	0.095	12.5	0.0	1.3	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
SHOCT	PF09851.9	gi|564288294|ref|YP_008874239.1|	-	2.8e-07	30.0	0.1	4.5e-07	29.4	0.1	1.4	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|564288294|ref|YP_008874239.1|	-	4e-05	23.6	1.1	7.1e-05	22.8	1.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Sulfate_transp	PF00916.20	gi|564288294|ref|YP_008874239.1|	-	0.016	14.0	0.0	0.02	13.7	0.0	1.1	1	0	0	1	1	1	0	Sulfate	permease	family
DUF5368	PF17336.2	gi|564288046|ref|YP_008874241.1|	-	0.12	12.5	4.7	0.054	13.7	1.6	1.8	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5368)
FtsK_gamma	PF09397.10	gi|564288046|ref|YP_008874241.1|	-	0.14	12.0	0.0	1.1	9.1	0.0	2.3	3	0	0	3	3	3	0	Ftsk	gamma	domain
DUF3267	PF11667.8	gi|564288046|ref|YP_008874241.1|	-	2.9	8.2	5.3	2.2	8.6	1.5	2.5	2	1	1	3	3	3	0	Putative	zincin	peptidase
PQQ_2	PF13360.6	gi|564288047|ref|YP_008874242.1|	-	9.1e-34	117.1	28.6	9.3e-22	77.8	8.3	3.0	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|564288047|ref|YP_008874242.1|	-	4.6e-13	49.2	38.9	0.015	15.7	0.8	8.0	7	1	0	7	7	7	6	PQQ-like	domain
PQQ	PF01011.21	gi|564288047|ref|YP_008874242.1|	-	3.2e-06	26.8	2.4	6.9	6.8	0.1	6.1	5	0	0	5	5	5	3	PQQ	enzyme	repeat
MTH865	PF07747.11	gi|564288049|ref|YP_008874244.1|	-	1.7e-24	85.4	0.1	1.9e-24	85.2	0.1	1.0	1	0	0	1	1	1	1	MTH865-like	family
HMA	PF00403.26	gi|564288050|ref|YP_008874245.1|	-	1.1e-16	61.0	0.4	1.2e-16	60.9	0.4	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
BOFC_N	PF08977.10	gi|564288050|ref|YP_008874245.1|	-	0.13	12.3	0.1	0.89	9.6	0.0	1.9	2	0	0	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
Usp	PF00582.26	gi|564288051|ref|YP_008874246.1|	-	1.3e-26	93.8	1.5	1.4e-26	93.7	1.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|564288051|ref|YP_008874246.1|	-	0.014	15.4	0.1	0.025	14.6	0.1	1.4	1	1	0	1	1	1	0	DNA	photolyase
Sulfatase	PF00884.23	gi|564288052|ref|YP_008874247.1|	-	7.2e-32	111.0	0.0	1.1e-31	110.4	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564288052|ref|YP_008874247.1|	-	1.5e-07	31.3	0.1	0.015	14.9	0.2	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Phosphoesterase	PF04185.14	gi|564288052|ref|YP_008874247.1|	-	0.0024	17.1	0.0	0.19	10.9	0.0	2.2	2	0	0	2	2	2	2	Phosphoesterase	family
DUF229	PF02995.17	gi|564288052|ref|YP_008874247.1|	-	0.0031	16.2	0.0	0.0045	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.12	gi|564288052|ref|YP_008874247.1|	-	0.0036	16.4	0.0	0.0059	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
Metalloenzyme	PF01676.18	gi|564288052|ref|YP_008874247.1|	-	0.15	11.4	0.0	0.29	10.4	0.0	1.4	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Alk_phosphatase	PF00245.20	gi|564288052|ref|YP_008874247.1|	-	0.2	10.6	0.1	11	4.9	0.0	2.3	2	1	0	2	2	2	0	Alkaline	phosphatase
PIN_2	PF10130.9	gi|564288053|ref|YP_008874248.1|	-	0.086	13.1	0.1	0.1	12.8	0.1	1.4	1	0	0	1	1	1	0	PIN	domain
RHH_8	PF17723.1	gi|564288053|ref|YP_008874248.1|	-	0.11	12.7	0.0	1	9.5	0.0	2.0	2	0	0	2	2	2	0	Ribbon-Helix-Helix	transcriptional	regulator	family
Pyr_redox_2	PF07992.14	gi|564288054|ref|YP_008874249.1|	-	4.2e-27	95.1	0.0	5.5e-27	94.8	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288054|ref|YP_008874249.1|	-	2.1e-14	53.5	0.0	4.9e-09	35.9	0.0	2.8	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564288054|ref|YP_008874249.1|	-	6.2e-06	26.7	0.0	0.058	14.0	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288054|ref|YP_008874249.1|	-	6.2e-06	25.5	3.4	0.0003	20.0	0.8	2.6	2	1	0	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|564288054|ref|YP_008874249.1|	-	3.7e-05	23.5	3.2	0.011	15.3	1.9	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|564288054|ref|YP_008874249.1|	-	5.9e-05	22.4	0.0	0.0003	20.0	0.0	1.8	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_3	PF01494.19	gi|564288054|ref|YP_008874249.1|	-	8.9e-05	21.9	0.6	0.00014	21.2	0.6	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|564288054|ref|YP_008874249.1|	-	0.00021	20.1	0.2	0.019	13.6	0.5	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|564288054|ref|YP_008874249.1|	-	0.00035	20.1	1.9	0.00063	19.2	0.6	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|564288054|ref|YP_008874249.1|	-	0.00081	18.6	0.4	0.0017	17.5	0.2	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|564288054|ref|YP_008874249.1|	-	0.004	16.4	0.1	0.0073	15.6	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|564288054|ref|YP_008874249.1|	-	0.014	15.6	0.3	0.042	14.1	0.3	1.9	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.6	gi|564288054|ref|YP_008874249.1|	-	0.017	15.1	0.7	0.54	10.2	0.0	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|564288054|ref|YP_008874249.1|	-	0.074	12.1	0.4	0.43	9.6	0.3	1.9	1	1	1	2	2	2	0	Lycopene	cyclase	protein
RVT_3	PF13456.6	gi|564288295|ref|YP_008874250.1|	-	6.3e-10	38.9	0.0	8.5e-10	38.5	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|564288295|ref|YP_008874250.1|	-	1.5e-08	34.9	0.0	2.5e-08	34.2	0.0	1.3	1	0	0	1	1	1	1	RNase	H
SCP_3	PF17844.1	gi|564288295|ref|YP_008874250.1|	-	0.048	13.4	0.1	0.16	11.7	0.0	1.9	1	1	0	2	2	2	0	Bacterial	SCP	ortholog
LRV	PF01816.17	gi|564288295|ref|YP_008874250.1|	-	1.4	9.5	5.4	5.3	7.7	0.4	3.2	2	1	1	3	3	3	0	Leucine	rich	repeat	variant
GSDH	PF07995.11	gi|564288055|ref|YP_008874251.1|	-	9.1e-114	380.2	0.0	1.1e-113	380.0	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
TAT_signal	PF10518.9	gi|564288055|ref|YP_008874251.1|	-	0.004	16.9	2.5	0.004	16.9	2.5	1.8	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glucodextran_B	PF09136.10	gi|564288055|ref|YP_008874251.1|	-	0.63	10.4	4.6	3.3	8.2	0.1	2.6	1	1	1	2	2	2	0	Glucodextranase,	domain	B
DUF202	PF02656.15	gi|564288296|ref|YP_008874252.1|	-	0.56	10.7	2.7	0.69	10.4	2.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
PHO4	PF01384.20	gi|564288056|ref|YP_008874254.1|	-	1.4e-35	122.9	40.0	1.4e-34	119.6	38.3	2.5	1	1	0	1	1	1	1	Phosphate	transporter	family
AA_permease_2	PF13520.6	gi|564288057|ref|YP_008874255.1|	-	1.2e-42	146.2	41.1	1.5e-42	145.9	41.1	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564288057|ref|YP_008874255.1|	-	3.1e-42	144.8	39.3	3.9e-42	144.4	39.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|564288057|ref|YP_008874255.1|	-	0.00029	19.8	12.2	0.00029	19.8	12.2	2.2	2	1	0	2	2	2	1	Spore	germination	protein
Usp	PF00582.26	gi|564288058|ref|YP_008874256.1|	-	1.3e-06	28.9	0.9	0.00015	22.3	0.1	2.5	2	1	0	2	2	2	2	Universal	stress	protein	family
SCO1-SenC	PF02630.14	gi|564288059|ref|YP_008874257.1|	-	6.4e-21	74.7	0.2	8.2e-21	74.3	0.2	1.1	1	0	0	1	1	1	1	SCO1/SenC
TAT_signal	PF10518.9	gi|564288059|ref|YP_008874257.1|	-	0.0037	17.1	1.5	0.0059	16.4	1.5	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
KRAB	PF01352.27	gi|564288059|ref|YP_008874257.1|	-	0.11	12.2	0.1	0.25	11.0	0.1	1.6	1	0	0	1	1	1	0	KRAB	box
Redoxin	PF08534.10	gi|564288060|ref|YP_008874258.1|	-	2.2e-07	30.7	0.0	2.8e-07	30.4	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.21	gi|564288060|ref|YP_008874258.1|	-	5.4e-06	26.3	0.0	7.2e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.6	gi|564288060|ref|YP_008874258.1|	-	0.00019	21.7	0.0	0.00032	21.0	0.0	1.3	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.20	gi|564288060|ref|YP_008874258.1|	-	0.00066	19.6	0.0	0.0014	18.6	0.0	1.4	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288060|ref|YP_008874258.1|	-	0.085	13.3	0.0	0.13	12.7	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
DsbD	PF02683.15	gi|564288061|ref|YP_008874259.1|	-	5e-14	52.7	12.8	8.9e-14	51.9	12.8	1.3	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF3188	PF11384.8	gi|564288061|ref|YP_008874259.1|	-	0.098	12.4	0.4	0.098	12.4	0.4	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
TrkH	PF02386.16	gi|564288062|ref|YP_008874260.1|	-	1e-66	225.4	14.4	6.3e-66	222.8	14.4	2.0	1	1	0	1	1	1	1	Cation	transport	protein
TrkA_N	PF02254.18	gi|564288063|ref|YP_008874261.1|	-	7.4e-25	87.5	4.6	1.1e-24	86.9	2.5	2.0	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564288063|ref|YP_008874261.1|	-	4e-14	52.2	0.5	1.5e-12	47.2	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
Shikimate_DH	PF01488.20	gi|564288063|ref|YP_008874261.1|	-	0.0005	20.2	0.2	0.00081	19.5	0.2	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|564288063|ref|YP_008874261.1|	-	0.00097	19.5	0.9	0.002	18.5	0.3	1.7	2	0	0	2	2	2	1	Putative	NAD(P)-binding
NAD_binding_2	PF03446.15	gi|564288063|ref|YP_008874261.1|	-	0.0011	19.2	0.5	0.0027	17.9	0.2	1.8	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ADH_zinc_N	PF00107.26	gi|564288063|ref|YP_008874261.1|	-	0.0022	17.9	0.4	0.0078	16.2	0.5	1.7	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|564288063|ref|YP_008874261.1|	-	0.0037	16.6	1.8	0.0058	15.9	1.8	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288063|ref|YP_008874261.1|	-	0.0042	17.3	0.9	0.0093	16.2	0.9	1.7	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|564288063|ref|YP_008874261.1|	-	0.005	16.8	3.1	0.0073	16.2	1.8	1.9	1	1	0	1	1	1	1	NAD(P)H-binding
XdhC_C	PF13478.6	gi|564288063|ref|YP_008874261.1|	-	0.0069	16.9	0.1	0.013	16.0	0.1	1.5	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Pyr_redox	PF00070.27	gi|564288063|ref|YP_008874261.1|	-	0.011	16.3	0.4	0.043	14.4	0.2	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Peripla_BP_3	PF13377.6	gi|564288063|ref|YP_008874261.1|	-	0.012	15.9	0.1	0.017	15.4	0.1	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein-like	domain
PEP-utilizers	PF00391.23	gi|564288063|ref|YP_008874261.1|	-	0.022	14.5	0.0	0.055	13.2	0.0	1.7	1	0	0	1	1	1	0	PEP-utilising	enzyme,	mobile	domain
GFO_IDH_MocA	PF01408.22	gi|564288063|ref|YP_008874261.1|	-	0.033	15.0	0.6	0.1	13.5	0.6	1.8	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
3HCDH_N	PF02737.18	gi|564288063|ref|YP_008874261.1|	-	0.039	13.8	0.3	0.059	13.2	0.3	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564288063|ref|YP_008874261.1|	-	0.04	13.5	1.8	0.18	11.3	0.4	2.1	1	1	1	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ATPgrasp_N	PF18130.1	gi|564288063|ref|YP_008874261.1|	-	0.049	14.2	1.8	0.11	13.1	1.8	1.6	1	0	0	1	1	1	0	ATP-grasp	N-terminal	domain
PK_C	PF02887.16	gi|564288063|ref|YP_008874261.1|	-	0.084	13.1	0.2	0.21	11.8	0.2	1.7	1	1	0	1	1	1	0	Pyruvate	kinase,	alpha/beta	domain
2-Hacid_dh_C	PF02826.19	gi|564288063|ref|YP_008874261.1|	-	0.085	12.2	0.3	0.24	10.7	0.1	1.8	2	1	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288063|ref|YP_008874261.1|	-	0.39	9.9	3.1	3.5	6.8	1.1	2.1	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
p25-alpha	PF05517.12	gi|564288064|ref|YP_008874262.1|	-	0.091	12.9	0.0	0.11	12.7	0.0	1.1	1	0	0	1	1	1	0	p25-alpha
TrkA_C	PF02080.21	gi|564288065|ref|YP_008874263.1|	-	6.5e-13	48.3	0.6	1.2e-12	47.5	0.6	1.4	1	0	0	1	1	1	1	TrkA-C	domain
HTH_24	PF13412.6	gi|564288065|ref|YP_008874263.1|	-	6e-12	44.9	0.2	1.2e-11	44.0	0.2	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564288065|ref|YP_008874263.1|	-	2.6e-11	43.2	0.4	4.9e-11	42.3	0.4	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564288065|ref|YP_008874263.1|	-	4.9e-06	26.4	0.0	1.1e-05	25.3	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564288065|ref|YP_008874263.1|	-	1.7e-05	24.8	0.0	3.5e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288065|ref|YP_008874263.1|	-	8.3e-05	22.3	0.0	0.00019	21.1	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288065|ref|YP_008874263.1|	-	0.00012	21.8	0.1	0.00062	19.6	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HrcA_DNA-bdg	PF03444.15	gi|564288065|ref|YP_008874263.1|	-	0.00037	20.1	0.0	0.00063	19.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Fe_dep_repress	PF01325.19	gi|564288065|ref|YP_008874263.1|	-	0.0013	18.8	0.0	0.0026	17.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|564288065|ref|YP_008874263.1|	-	0.0055	16.6	0.0	0.016	15.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|564288065|ref|YP_008874263.1|	-	0.0081	16.3	0.0	0.014	15.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564288065|ref|YP_008874263.1|	-	0.0087	15.8	0.0	0.019	14.8	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Rrf2	PF02082.20	gi|564288065|ref|YP_008874263.1|	-	0.024	15.0	0.1	0.063	13.6	0.0	1.7	2	0	0	2	2	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|564288065|ref|YP_008874263.1|	-	0.028	14.3	0.0	0.16	12.0	0.0	2.1	2	0	0	2	2	2	0	MarR	family
HTH_38	PF13936.6	gi|564288065|ref|YP_008874263.1|	-	0.11	12.3	0.1	0.26	11.1	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|564288065|ref|YP_008874263.1|	-	0.12	11.8	0.0	0.25	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Med11	PF10280.9	gi|564288065|ref|YP_008874263.1|	-	0.13	12.7	0.2	3.8	8.0	0.0	2.3	2	1	0	2	2	2	0	Mediator	complex	protein
HTH_13	PF11972.8	gi|564288065|ref|YP_008874263.1|	-	0.15	12.2	0.1	4	7.6	0.0	2.4	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Usp	PF00582.26	gi|564288298|ref|YP_008874264.1|	-	9.4e-10	39.2	3.8	0.00012	22.6	1.4	3.2	2	2	0	2	2	2	2	Universal	stress	protein	family
MafB	PF06255.13	gi|564288298|ref|YP_008874264.1|	-	0.13	11.7	0.2	0.17	11.3	0.2	1.2	1	0	0	1	1	1	0	Neisseria	toxin	MafB
Nitroreductase	PF00881.24	gi|564288066|ref|YP_008874265.1|	-	1.9e-17	63.8	0.3	3.9e-08	33.5	0.1	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|564288066|ref|YP_008874265.1|	-	6.7e-05	22.5	0.0	0.0002	21.0	0.0	1.7	2	0	0	2	2	2	1	Putative	TM	nitroreductase
LtrA	PF06772.11	gi|564288067|ref|YP_008874266.1|	-	0.0096	15.2	6.8	0.0096	15.2	6.8	2.7	2	1	1	3	3	3	1	Bacterial	low	temperature	requirement	A	protein	(LtrA)
Nudix_N_2	PF14803.6	gi|564288067|ref|YP_008874266.1|	-	0.42	10.6	1.1	0.58	10.1	0.3	1.7	2	0	0	2	2	2	0	Nudix	N-terminal
HTH_Crp_2	PF13545.6	gi|564288068|ref|YP_008874267.1|	-	5.2e-09	36.0	0.1	9.4e-09	35.1	0.1	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|564288068|ref|YP_008874267.1|	-	3.1e-06	27.2	0.3	7.6e-06	25.9	0.3	1.7	1	0	0	1	1	1	1	DprA	winged	helix	domain
MarR_2	PF12802.7	gi|564288068|ref|YP_008874267.1|	-	3.4e-06	26.8	0.1	7.1e-06	25.8	0.1	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564288068|ref|YP_008874267.1|	-	0.0001	22.2	0.0	0.00016	21.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564288068|ref|YP_008874267.1|	-	0.00015	21.3	0.1	0.00024	20.6	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564288068|ref|YP_008874267.1|	-	0.00031	20.5	0.0	0.00058	19.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564288068|ref|YP_008874267.1|	-	0.00047	20.0	0.0	0.00083	19.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564288068|ref|YP_008874267.1|	-	0.00096	19.2	0.3	0.002	18.2	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Crp	PF00325.20	gi|564288068|ref|YP_008874267.1|	-	0.0021	17.7	0.0	0.0039	16.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	crp	family
Rrf2	PF02082.20	gi|564288068|ref|YP_008874267.1|	-	0.004	17.5	0.0	0.0081	16.5	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288068|ref|YP_008874267.1|	-	0.0048	16.7	0.3	0.022	14.6	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|564288068|ref|YP_008874267.1|	-	0.016	14.8	0.0	0.031	13.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|564288068|ref|YP_008874267.1|	-	0.018	15.0	0.0	0.03	14.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_7	PF02796.15	gi|564288068|ref|YP_008874267.1|	-	0.023	14.8	0.0	0.036	14.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_3	PF01381.22	gi|564288068|ref|YP_008874267.1|	-	0.1	12.6	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
GP17	PF17420.2	gi|564288068|ref|YP_008874267.1|	-	0.16	12.2	0.0	0.27	11.4	0.0	1.5	1	0	0	1	1	1	0	Superinfection	exclusion	gene	product	17
ABC_tran	PF00005.27	gi|564288069|ref|YP_008874268.1|	-	1.3e-24	87.2	0.0	1.9e-24	86.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288069|ref|YP_008874268.1|	-	2.4e-12	47.3	0.0	7.6e-07	29.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
MeaB	PF03308.16	gi|564288069|ref|YP_008874268.1|	-	6.1e-05	22.1	0.1	9.5e-05	21.5	0.1	1.2	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SMC_N	PF02463.19	gi|564288069|ref|YP_008874268.1|	-	0.00016	21.2	0.0	0.15	11.5	0.0	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564288069|ref|YP_008874268.1|	-	0.00037	20.3	0.0	0.26	10.9	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564288069|ref|YP_008874268.1|	-	0.0021	18.6	0.1	0.0034	17.9	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564288069|ref|YP_008874268.1|	-	0.0091	15.7	0.0	0.026	14.3	0.0	1.7	2	1	1	3	3	3	1	AAA	domain
AAA_16	PF13191.6	gi|564288069|ref|YP_008874268.1|	-	0.013	15.9	0.0	0.028	14.8	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564288069|ref|YP_008874268.1|	-	0.021	15.2	0.5	1.1	9.7	0.1	2.7	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP_bind_1	PF03029.17	gi|564288069|ref|YP_008874268.1|	-	0.023	14.5	0.1	0.053	13.3	0.1	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
SRP54	PF00448.22	gi|564288069|ref|YP_008874268.1|	-	0.077	12.6	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|564288069|ref|YP_008874268.1|	-	0.078	13.3	0.0	0.13	12.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|564288069|ref|YP_008874268.1|	-	0.1	12.4	0.1	0.18	11.6	0.1	1.3	1	0	0	1	1	1	0	MukB	N-terminal
RsgA_GTPase	PF03193.16	gi|564288069|ref|YP_008874268.1|	-	0.19	11.6	0.0	0.58	10.0	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
AAA_27	PF13514.6	gi|564288069|ref|YP_008874268.1|	-	0.22	11.1	0.0	0.33	10.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|564288069|ref|YP_008874268.1|	-	0.29	9.7	0.4	10	4.6	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
LSPR	PF06049.12	gi|564288069|ref|YP_008874268.1|	-	0.99	9.5	4.9	27	5.1	0.2	3.7	3	1	0	3	3	3	0	Coagulation	Factor	V	LSPD	Repeat
DUF2249	PF10006.9	gi|564288071|ref|YP_008874270.1|	-	6e-24	83.7	0.2	6.6e-24	83.6	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DUF2378	PF09536.10	gi|564288073|ref|YP_008874272.1|	-	0.015	15.2	0.0	1.7	8.5	0.0	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2378)
MarR_2	PF12802.7	gi|564288074|ref|YP_008874273.1|	-	2.2e-06	27.5	0.7	5.4e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|564288074|ref|YP_008874273.1|	-	5.4e-06	26.1	0.0	1.2e-05	25.0	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
RP-C	PF03428.13	gi|564288074|ref|YP_008874273.1|	-	6.7e-05	22.6	2.9	0.00033	20.3	0.0	2.7	3	0	0	3	3	3	1	Replication	protein	C	N-terminal	domain
MarR	PF01047.22	gi|564288074|ref|YP_008874273.1|	-	0.00013	21.8	0.0	0.00029	20.7	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|564288074|ref|YP_008874273.1|	-	0.0003	20.6	0.0	0.0006	19.6	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|564288074|ref|YP_008874273.1|	-	0.00033	21.1	0.1	0.0018	18.7	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|564288074|ref|YP_008874273.1|	-	0.011	15.4	1.1	0.036	13.7	0.0	2.4	3	1	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|564288074|ref|YP_008874273.1|	-	0.02	14.8	0.0	0.045	13.6	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|564288074|ref|YP_008874273.1|	-	0.024	15.0	0.0	0.05	14.0	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
DUF1690	PF07956.11	gi|564288074|ref|YP_008874273.1|	-	0.12	12.8	4.0	0.19	12.2	4.0	1.3	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF1690)
Syntaxin-6_N	PF09177.11	gi|564288074|ref|YP_008874273.1|	-	0.95	10.1	6.7	0.78	10.3	4.3	2.1	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
HTH_20	PF12840.7	gi|564288075|ref|YP_008874274.1|	-	6.1e-12	45.4	0.3	8.1e-12	45.0	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288075|ref|YP_008874274.1|	-	7.3e-07	29.0	0.1	1.4e-06	28.0	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564288075|ref|YP_008874274.1|	-	1.4e-06	28.0	0.0	3.2e-06	26.9	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564288075|ref|YP_008874274.1|	-	6e-06	25.7	0.0	1.1e-05	24.9	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|564288075|ref|YP_008874274.1|	-	8.5e-06	26.2	0.0	5.2e-05	23.7	0.0	2.0	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
DUF2513	PF10711.9	gi|564288075|ref|YP_008874274.1|	-	0.0028	17.9	0.0	0.0034	17.7	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
TrmB	PF01978.19	gi|564288075|ref|YP_008874274.1|	-	0.0048	16.7	0.0	0.0078	16.1	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|564288075|ref|YP_008874274.1|	-	0.0095	15.8	0.0	0.017	15.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|564288075|ref|YP_008874274.1|	-	0.11	12.7	0.0	0.15	12.3	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|564288075|ref|YP_008874274.1|	-	0.11	12.5	0.0	0.15	12.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Sigma70_r4	PF04545.16	gi|564288075|ref|YP_008874274.1|	-	0.13	11.8	0.0	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
Fructosamin_kin	PF03881.14	gi|564288076|ref|YP_008874275.1|	-	4.5e-41	141.0	0.0	5.5e-41	140.7	0.0	1.0	1	0	0	1	1	1	1	Fructosamine	kinase
APH	PF01636.23	gi|564288076|ref|YP_008874275.1|	-	1.3e-14	54.7	5.1	1.7e-14	54.3	5.1	1.1	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
APH_6_hur	PF04655.14	gi|564288076|ref|YP_008874275.1|	-	0.0023	17.4	0.0	0.0049	16.3	0.0	1.5	1	0	0	1	1	1	1	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
Sugar_tr	PF00083.24	gi|564288077|ref|YP_008874276.1|	-	2.6e-123	412.2	20.9	3e-123	412.0	20.9	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|564288077|ref|YP_008874276.1|	-	1.4e-42	145.9	77.4	4.5e-33	114.6	42.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TRI12	PF06609.13	gi|564288077|ref|YP_008874276.1|	-	1.9e-08	33.2	2.8	1.9e-08	33.2	2.8	2.1	2	0	0	2	2	2	1	Fungal	trichothecene	efflux	pump	(TRI12)
MFS_1_like	PF12832.7	gi|564288077|ref|YP_008874276.1|	-	0.00077	18.4	0.2	0.00077	18.4	0.2	2.8	1	1	1	3	3	3	1	MFS_1	like	family
Bac_export_3	PF01313.19	gi|564288077|ref|YP_008874276.1|	-	0.021	14.8	0.3	0.021	14.8	0.3	3.6	3	1	0	3	3	3	0	Bacterial	export	proteins,	family	3
MFS_3	PF05977.13	gi|564288077|ref|YP_008874276.1|	-	0.083	11.3	18.1	0.015	13.7	7.8	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
Usp	PF00582.26	gi|564288078|ref|YP_008874277.1|	-	1.2e-16	61.5	0.8	1.5e-16	61.2	0.8	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Peripla_BP_2	PF01497.18	gi|564288079|ref|YP_008874278.1|	-	5.2e-19	68.7	0.0	8.3e-19	68.1	0.0	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|564288079|ref|YP_008874278.1|	-	0.0019	18.0	0.5	0.0033	17.2	0.5	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Sdh5	PF03937.16	gi|564288079|ref|YP_008874278.1|	-	0.14	12.2	0.1	6.8	6.7	0.0	2.5	2	0	0	2	2	2	0	Flavinator	of	succinate	dehydrogenase
Peripla_BP_2	PF01497.18	gi|564288080|ref|YP_008874279.1|	-	6.5e-24	84.8	0.0	1.1e-23	84.1	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|564288080|ref|YP_008874279.1|	-	0.0019	18.0	0.0	0.0031	17.3	0.0	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
YqgF	PF14639.6	gi|564288080|ref|YP_008874279.1|	-	0.073	12.8	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	Holliday-junction	resolvase-like	of	SPT6
Peripla_BP_2	PF01497.18	gi|564288081|ref|YP_008874280.1|	-	1.6e-11	44.2	0.0	2.3e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
HTH_24	PF13412.6	gi|564288082|ref|YP_008874281.1|	-	2.8e-12	46.0	0.2	4.4e-12	45.4	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564288082|ref|YP_008874281.1|	-	3.4e-11	42.8	0.9	6.3e-11	41.9	0.9	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564288082|ref|YP_008874281.1|	-	1.2e-05	25.2	0.0	2e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564288082|ref|YP_008874281.1|	-	4.1e-05	23.6	0.0	0.0001	22.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288082|ref|YP_008874281.1|	-	0.00016	21.3	0.1	0.005	16.6	0.1	2.2	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288082|ref|YP_008874281.1|	-	0.00022	21.0	0.0	0.00042	20.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564288082|ref|YP_008874281.1|	-	0.00026	20.8	0.0	0.00052	19.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|564288082|ref|YP_008874281.1|	-	0.00035	20.3	0.0	0.00063	19.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|564288082|ref|YP_008874281.1|	-	0.0005	20.4	0.0	0.0011	19.2	0.0	1.6	2	0	0	2	2	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|564288082|ref|YP_008874281.1|	-	0.0014	18.8	0.0	0.0027	17.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|564288082|ref|YP_008874281.1|	-	0.0032	17.1	0.0	0.0058	16.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_27	PF13463.6	gi|564288082|ref|YP_008874281.1|	-	0.0075	16.7	0.1	0.018	15.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_19	PF12844.7	gi|564288082|ref|YP_008874281.1|	-	0.017	15.1	0.5	0.064	13.3	0.5	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
Put_DNA-bind_N	PF06971.13	gi|564288082|ref|YP_008874281.1|	-	0.018	15.0	0.1	0.031	14.3	0.1	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_Mga	PF08280.11	gi|564288082|ref|YP_008874281.1|	-	0.022	14.8	0.0	0.036	14.1	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|564288082|ref|YP_008874281.1|	-	0.051	13.0	0.2	0.11	11.9	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR	PF01047.22	gi|564288082|ref|YP_008874281.1|	-	0.078	12.9	0.0	0.23	11.4	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.6	gi|564288082|ref|YP_008874281.1|	-	0.11	12.5	0.1	0.23	11.4	0.0	1.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|564288082|ref|YP_008874281.1|	-	0.15	12.1	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Proton_antipo_M	PF00361.20	gi|564288083|ref|YP_008874282.1|	-	1.9e-34	119.2	17.4	1.9e-34	119.2	17.4	2.4	1	1	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|564288083|ref|YP_008874282.1|	-	3.1e-07	30.4	0.1	2.6e-06	27.4	0.1	2.7	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2309	PF10070.9	gi|564288084|ref|YP_008874283.1|	-	2.8e-264	879.1	0.0	3.1e-264	878.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Bac_luciferase	PF00296.20	gi|564288085|ref|YP_008874284.1|	-	6.7e-33	114.4	2.0	7.7e-33	114.2	2.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
ADH_N	PF08240.12	gi|564288086|ref|YP_008874285.1|	-	1.4e-31	108.6	0.4	2.7e-31	107.7	0.4	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288086|ref|YP_008874285.1|	-	2e-28	99.0	0.7	2.9e-28	98.5	0.7	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|564288086|ref|YP_008874285.1|	-	3.2e-12	46.4	2.9	4.6e-12	45.9	2.9	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|564288086|ref|YP_008874285.1|	-	2.2e-05	25.5	0.5	4.4e-05	24.5	0.5	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_3	PF03447.16	gi|564288086|ref|YP_008874285.1|	-	0.00064	20.4	2.4	0.0011	19.6	2.4	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564288086|ref|YP_008874285.1|	-	0.041	13.2	0.1	0.073	12.4	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
MR_MLE_C	PF13378.6	gi|564288087|ref|YP_008874286.1|	-	5.1e-62	209.3	0.2	7.3e-62	208.8	0.2	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564288087|ref|YP_008874286.1|	-	2.1e-21	76.3	0.0	4.4e-21	75.3	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
adh_short_C2	PF13561.6	gi|564288088|ref|YP_008874287.1|	-	5e-74	248.8	1.3	5.8e-74	248.6	1.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564288088|ref|YP_008874287.1|	-	7.8e-60	201.7	2.8	9.4e-60	201.4	2.8	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564288088|ref|YP_008874287.1|	-	4.7e-14	52.7	0.9	6.5e-14	52.2	0.9	1.2	1	0	0	1	1	1	1	KR	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288088|ref|YP_008874287.1|	-	0.0012	19.1	0.1	0.0019	18.5	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
KdpD	PF02702.17	gi|564288088|ref|YP_008874287.1|	-	0.028	13.9	0.3	0.046	13.2	0.3	1.3	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
Epimerase	PF01370.21	gi|564288088|ref|YP_008874287.1|	-	0.067	12.6	0.5	0.11	12.0	0.5	1.4	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|564288088|ref|YP_008874287.1|	-	0.097	11.7	0.3	0.13	11.3	0.3	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
DUF948	PF06103.11	gi|564288088|ref|YP_008874287.1|	-	0.16	12.3	2.0	0.35	11.1	1.7	1.6	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
FGGY_C	PF02782.16	gi|564288089|ref|YP_008874288.1|	-	3.6e-23	82.3	0.0	5e-23	81.9	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FGGY_N	PF00370.21	gi|564288089|ref|YP_008874288.1|	-	6.3e-18	65.2	0.0	8.6e-18	64.8	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
Aldolase_II	PF00596.21	gi|564288090|ref|YP_008874289.1|	-	3e-50	170.8	0.3	3.5e-50	170.5	0.3	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
ABC_tran	PF00005.27	gi|564288091|ref|YP_008874290.1|	-	1.3e-31	109.9	0.0	2.5e-31	109.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|564288091|ref|YP_008874290.1|	-	3.1e-13	50.3	0.1	2.8e-12	47.3	0.1	2.6	2	0	0	2	2	2	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|564288091|ref|YP_008874290.1|	-	1.3e-10	41.3	0.3	5e-10	39.4	0.1	2.2	2	0	0	2	2	1	1	TOBE	domain
CysA_C_terminal	PF17850.1	gi|564288091|ref|YP_008874290.1|	-	7e-09	36.1	0.1	2.4e-08	34.4	0.0	2.0	2	0	0	2	2	1	1	CysA	C-terminal	regulatory	domain
AAA_21	PF13304.6	gi|564288091|ref|YP_008874290.1|	-	1.1e-08	35.3	0.0	0.00066	19.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288091|ref|YP_008874290.1|	-	0.00024	20.6	0.3	0.00057	19.4	0.3	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|564288091|ref|YP_008874290.1|	-	0.00039	20.4	0.0	0.00077	19.4	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|564288091|ref|YP_008874290.1|	-	0.00045	19.9	0.0	0.00098	18.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|564288091|ref|YP_008874290.1|	-	0.0027	17.9	0.0	0.017	15.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|564288091|ref|YP_008874290.1|	-	0.0036	17.1	1.0	0.048	13.4	0.7	2.5	2	1	0	2	2	2	1	Cytidylate	kinase
AAA_22	PF13401.6	gi|564288091|ref|YP_008874290.1|	-	0.0041	17.4	0.0	0.013	15.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|564288091|ref|YP_008874290.1|	-	0.01	15.5	0.1	0.018	14.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564288091|ref|YP_008874290.1|	-	0.017	14.7	0.1	0.61	9.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|564288091|ref|YP_008874290.1|	-	0.017	15.5	0.0	0.036	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564288091|ref|YP_008874290.1|	-	0.025	15.0	0.1	0.079	13.4	0.1	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|564288091|ref|YP_008874290.1|	-	0.027	15.0	0.0	0.052	14.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TOBE	PF03459.17	gi|564288091|ref|YP_008874290.1|	-	0.027	14.8	0.0	0.1	12.9	0.0	2.0	1	0	0	1	1	1	0	TOBE	domain
DraK_HK_N	PF18092.1	gi|564288091|ref|YP_008874290.1|	-	0.046	14.1	0.6	3.4	8.2	0.1	3.2	3	0	0	3	3	3	0	DraK	Histidine	Kinase	N-terminal	domain
AAA_28	PF13521.6	gi|564288091|ref|YP_008874290.1|	-	0.06	13.6	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SAM_LFY	PF01698.16	gi|564288091|ref|YP_008874290.1|	-	0.064	13.2	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	Floricaula	/	Leafy	protein	SAM	domain
AAA_15	PF13175.6	gi|564288091|ref|YP_008874290.1|	-	0.076	12.7	0.0	0.14	11.8	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|564288091|ref|YP_008874290.1|	-	0.099	13.2	0.0	0.21	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF3987	PF13148.6	gi|564288091|ref|YP_008874290.1|	-	0.11	11.5	0.1	0.49	9.3	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
MMR_HSR1	PF01926.23	gi|564288091|ref|YP_008874290.1|	-	0.12	12.5	0.2	0.36	10.9	0.2	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
RNA_helicase	PF00910.22	gi|564288091|ref|YP_008874290.1|	-	0.14	12.6	0.1	0.29	11.5	0.1	1.7	1	1	0	1	1	1	0	RNA	helicase
BPD_transp_1	PF00528.22	gi|564288092|ref|YP_008874291.1|	-	3.7e-17	62.7	19.1	3.7e-17	62.7	19.1	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PMT_4TMC	PF16192.5	gi|564288092|ref|YP_008874291.1|	-	0.62	9.6	10.8	2.4	7.7	8.3	3.0	1	1	1	2	2	2	0	C-terminal	four	TMM	region	of	protein-O-mannosyltransferase
TMEMspv1-c74-12	PF11044.8	gi|564288092|ref|YP_008874291.1|	-	2.9	7.9	5.8	0.35	10.9	0.7	2.2	2	0	0	2	2	2	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
BPD_transp_1	PF00528.22	gi|564288093|ref|YP_008874292.1|	-	2.8e-18	66.3	21.4	2.8e-18	66.3	21.4	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|564288094|ref|YP_008874293.1|	-	4.1e-25	89.4	3.2	6.1e-25	88.8	3.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564288094|ref|YP_008874293.1|	-	0.013	15.3	1.0	0.023	14.5	1.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ADH_N	PF08240.12	gi|564288095|ref|YP_008874294.1|	-	2.5e-33	114.2	3.2	2.5e-33	114.2	3.2	1.9	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288095|ref|YP_008874294.1|	-	4.7e-21	75.1	0.0	7.5e-21	74.5	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|564288095|ref|YP_008874294.1|	-	4.4e-10	39.4	0.0	8.9e-10	38.4	0.0	1.5	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|564288095|ref|YP_008874294.1|	-	5.3e-05	24.3	0.0	9.4e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
F420_oxidored	PF03807.17	gi|564288095|ref|YP_008874294.1|	-	0.00067	20.2	0.0	0.0013	19.3	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|564288095|ref|YP_008874294.1|	-	0.025	14.8	0.0	0.056	13.7	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
NTP_transf_3	PF12804.7	gi|564288095|ref|YP_008874294.1|	-	0.038	14.3	0.1	0.067	13.5	0.1	1.4	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Rossmann-like	PF10727.9	gi|564288095|ref|YP_008874294.1|	-	0.047	13.6	0.1	0.13	12.1	0.1	1.8	1	1	1	2	2	2	0	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|564288095|ref|YP_008874294.1|	-	0.15	11.3	0.1	0.22	10.7	0.1	1.2	1	0	0	1	1	1	0	FAD	binding	domain
IclR	PF01614.18	gi|564288096|ref|YP_008874295.1|	-	4e-29	101.1	0.0	3.9e-28	97.9	0.0	2.0	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288096|ref|YP_008874295.1|	-	8.4e-11	41.5	0.4	2.4e-10	40.1	0.1	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288096|ref|YP_008874295.1|	-	2.3e-07	30.6	0.0	3.6e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|564288096|ref|YP_008874295.1|	-	1e-05	25.4	0.0	3.3e-05	23.7	0.0	1.8	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|564288096|ref|YP_008874295.1|	-	2.6e-05	24.0	0.1	6.5e-05	22.7	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564288096|ref|YP_008874295.1|	-	7.6e-05	22.7	0.1	0.0002	21.3	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288096|ref|YP_008874295.1|	-	0.00045	19.7	0.0	0.0008	18.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564288096|ref|YP_008874295.1|	-	0.0005	19.9	0.1	0.0011	18.8	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|564288096|ref|YP_008874295.1|	-	0.0046	17.3	0.1	0.0085	16.4	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|564288096|ref|YP_008874295.1|	-	0.0062	16.7	0.1	0.013	15.7	0.1	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.6	gi|564288096|ref|YP_008874295.1|	-	0.016	15.3	0.0	0.028	14.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
FaeA	PF04703.12	gi|564288096|ref|YP_008874295.1|	-	0.038	14.4	0.0	0.21	12.0	0.0	2.0	2	0	0	2	2	2	0	FaeA-like	protein
MarR	PF01047.22	gi|564288096|ref|YP_008874295.1|	-	0.044	13.7	0.0	0.073	13.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_10	PF04967.12	gi|564288096|ref|YP_008874295.1|	-	0.13	12.1	0.0	0.29	11.0	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HEAT_2	PF13646.6	gi|564288097|ref|YP_008874296.1|	-	1.7e-13	50.8	10.4	8e-08	32.6	1.0	3.3	1	1	2	3	3	3	3	HEAT	repeats
HEAT_EZ	PF13513.6	gi|564288097|ref|YP_008874296.1|	-	1e-08	35.5	8.6	0.016	15.7	0.2	4.8	2	1	3	5	5	5	4	HEAT-like	repeat
HEAT	PF02985.22	gi|564288097|ref|YP_008874296.1|	-	1.6e-08	34.1	1.4	0.08	13.2	0.0	5.0	5	0	0	5	5	5	2	HEAT	repeat
Cnd1	PF12717.7	gi|564288097|ref|YP_008874296.1|	-	0.0002	21.5	0.0	0.5	10.4	0.0	2.6	1	1	1	2	2	2	2	non-SMC	mitotic	condensation	complex	subunit	1
Adaptin_N	PF01602.20	gi|564288097|ref|YP_008874296.1|	-	0.0048	15.5	0.1	0.94	8.0	0.1	2.6	1	1	2	3	3	3	2	Adaptin	N	terminal	region
DZR	PF12773.7	gi|564288097|ref|YP_008874296.1|	-	0.0099	15.9	0.3	0.022	14.8	0.3	1.6	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564288097|ref|YP_008874296.1|	-	0.011	15.5	4.7	0.02	14.6	4.7	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|564288097|ref|YP_008874296.1|	-	0.05	13.0	6.7	0.11	11.9	6.7	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
IFRD	PF05004.13	gi|564288097|ref|YP_008874296.1|	-	0.074	12.2	0.1	1.9	7.5	0.0	2.3	2	1	0	2	2	2	0	Interferon-related	developmental	regulator	(IFRD)
TPR_4	PF07721.14	gi|564288097|ref|YP_008874296.1|	-	0.41	11.4	7.9	14	6.6	0.1	4.6	4	0	0	4	4	4	0	Tetratricopeptide	repeat
HEAT_PBS	PF03130.16	gi|564288097|ref|YP_008874296.1|	-	0.81	10.5	13.9	11	7.0	0.2	5.4	4	1	0	4	4	4	0	PBS	lyase	HEAT-like	repeat
LUD_dom	PF02589.15	gi|564288098|ref|YP_008874297.1|	-	2.2e-16	60.1	0.6	3e-15	56.4	0.0	1.9	1	1	1	2	2	2	2	LUD	domain
LUD_dom	PF02589.15	gi|564288099|ref|YP_008874298.1|	-	5.4e-42	143.7	0.2	1e-41	142.8	0.2	1.5	1	0	0	1	1	1	1	LUD	domain
Fer4_8	PF13183.6	gi|564288099|ref|YP_008874298.1|	-	1.6e-08	34.9	3.0	3.5e-08	33.8	3.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564288099|ref|YP_008874298.1|	-	7e-08	32.5	3.7	0.00024	21.1	0.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564288099|ref|YP_008874298.1|	-	8.1e-07	29.1	3.3	2e-06	27.9	3.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|564288099|ref|YP_008874298.1|	-	8.5e-07	29.4	2.1	1.6e-06	28.5	2.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564288099|ref|YP_008874298.1|	-	2e-06	28.3	5.6	4.7e-06	27.1	5.6	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|564288099|ref|YP_008874298.1|	-	0.0001	22.5	1.0	0.013	15.7	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564288099|ref|YP_008874298.1|	-	0.00016	21.3	13.8	0.00021	21.0	3.5	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564288099|ref|YP_008874298.1|	-	0.00025	21.0	2.7	0.00025	21.0	2.7	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|564288099|ref|YP_008874298.1|	-	0.00026	21.0	8.8	0.0014	18.7	8.8	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564288099|ref|YP_008874298.1|	-	0.0011	19.8	3.7	0.04	14.9	0.6	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|564288099|ref|YP_008874298.1|	-	0.01	15.9	15.3	0.04	14.0	4.3	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564288099|ref|YP_008874298.1|	-	0.03	14.8	3.2	0.03	14.8	3.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|564288099|ref|YP_008874298.1|	-	0.041	14.8	5.9	0.041	14.8	5.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|564288099|ref|YP_008874298.1|	-	0.052	13.3	3.4	0.1	12.4	0.2	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_22	PF17179.4	gi|564288099|ref|YP_008874298.1|	-	0.11	13.4	7.8	0.11	13.3	1.0	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF362	PF04015.12	gi|564288100|ref|YP_008874299.1|	-	0.00021	21.6	0.0	0.00041	20.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Lar_N	PF09861.9	gi|564288100|ref|YP_008874299.1|	-	0.00042	19.6	0.0	0.00065	18.9	0.0	1.2	1	0	0	1	1	1	1	Lactate	racemase	N-terminal	domain
DUF4147	PF13660.6	gi|564288101|ref|YP_008874300.1|	-	2.8e-70	236.4	1.1	3.8e-70	236.0	1.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|564288101|ref|YP_008874300.1|	-	1.9e-25	89.1	7.7	1.9e-25	89.1	7.7	2.1	2	0	0	2	2	2	1	MOFRL	family
Glyco_hydro_88	PF07470.13	gi|564288102|ref|YP_008874301.1|	-	1.1e-57	195.7	0.0	1.4e-57	195.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
Glyco_hydro_127	PF07944.12	gi|564288102|ref|YP_008874301.1|	-	0.076	11.5	0.0	0.11	10.9	0.0	1.2	1	0	0	1	1	1	0	Beta-L-arabinofuranosidase,	GH127
VCBS	PF13517.6	gi|564288103|ref|YP_008874302.1|	-	9.4e-29	99.8	22.2	5.8e-10	39.6	1.9	5.5	3	2	2	5	5	5	5	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
FG-GAP	PF01839.23	gi|564288103|ref|YP_008874302.1|	-	3e-22	78.4	30.3	0.018	15.2	0.0	7.3	7	0	0	7	7	7	7	FG-GAP	repeat
TcdB_toxin_midN	PF12256.8	gi|564288103|ref|YP_008874302.1|	-	4.2e-08	32.8	7.6	0.22	10.9	0.0	6.1	5	1	2	7	7	7	3	Insecticide	toxin	TcdB	middle/N-terminal	region
PliI	PF16743.5	gi|564288103|ref|YP_008874302.1|	-	3.4e-06	26.8	5.1	6.2	6.6	0.0	6.3	3	2	3	7	7	7	2	Periplasmic	lysozyme	inhibitor	of	I-type	lysozyme
Itfg2	PF15907.5	gi|564288103|ref|YP_008874302.1|	-	5.5e-05	22.4	7.2	1.3	8.0	0.2	5.1	3	1	1	5	5	5	3	Integrin-alpha	FG-GAP	repeat-containing	protein	2
BBS2_Mid	PF14783.6	gi|564288103|ref|YP_008874302.1|	-	0.00024	21.1	2.6	3.8	7.6	0.0	5.0	5	0	0	5	5	5	2	Ciliary	BBSome	complex	subunit	2,	middle	region
UDPG_MGDP_dh_N	PF03721.14	gi|564288104|ref|YP_008874303.1|	-	2.6e-43	147.8	0.0	4.2e-43	147.1	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|564288104|ref|YP_008874303.1|	-	3.1e-23	81.8	0.0	5.2e-23	81.1	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564288104|ref|YP_008874303.1|	-	9.2e-18	64.6	0.0	2.7e-17	63.1	0.0	1.8	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
F420_oxidored	PF03807.17	gi|564288104|ref|YP_008874303.1|	-	0.0036	17.8	0.0	1.7	9.3	0.0	3.3	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|564288104|ref|YP_008874303.1|	-	0.0071	16.5	0.0	0.037	14.2	0.0	2.1	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|564288104|ref|YP_008874303.1|	-	0.0076	16.1	0.0	0.012	15.6	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|564288104|ref|YP_008874303.1|	-	0.013	15.1	0.0	0.021	14.5	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|564288104|ref|YP_008874303.1|	-	0.014	14.8	0.0	0.088	12.2	0.0	2.2	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|564288104|ref|YP_008874303.1|	-	0.015	15.6	0.0	1.2	9.4	0.0	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
TrkA_N	PF02254.18	gi|564288104|ref|YP_008874303.1|	-	0.023	15.0	0.1	0.18	12.1	0.0	2.5	2	1	0	2	2	2	0	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564288104|ref|YP_008874303.1|	-	0.09	12.8	0.0	0.63	10.0	0.0	2.4	3	0	0	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.27	gi|564288104|ref|YP_008874303.1|	-	0.17	12.5	0.0	0.72	10.4	0.0	2.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Polysacc_synt_3	PF13440.6	gi|564288105|ref|YP_008874304.1|	-	1.1e-78	264.4	3.3	1.1e-78	264.4	3.3	2.0	3	0	0	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|564288105|ref|YP_008874304.1|	-	2e-39	135.6	7.1	2e-39	135.6	7.1	3.1	3	1	1	4	4	4	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|564288105|ref|YP_008874304.1|	-	6.1e-06	26.3	16.9	6.1e-06	26.3	16.9	3.0	4	0	0	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Glycos_transf_1	PF00534.20	gi|564288106|ref|YP_008874305.1|	-	1.7e-32	112.3	0.0	7.3e-32	110.3	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288106|ref|YP_008874305.1|	-	3.9e-27	95.3	0.0	6.8e-27	94.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288106|ref|YP_008874305.1|	-	1.7e-15	57.4	0.0	4.2e-15	56.2	0.0	1.6	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288106|ref|YP_008874305.1|	-	4.2e-11	43.5	0.1	7.6e-11	42.7	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288106|ref|YP_008874305.1|	-	1.7e-05	25.1	0.0	4.2e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564288106|ref|YP_008874305.1|	-	0.00071	19.6	0.0	0.0011	19.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
DUF1616	PF07760.11	gi|564288300|ref|YP_008874307.1|	-	1.3e-53	182.3	1.9	1.6e-53	182.0	1.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Sulfatase	PF00884.23	gi|564288107|ref|YP_008874309.1|	-	7.7e-37	127.3	0.8	1.1e-36	126.8	0.8	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564288107|ref|YP_008874309.1|	-	0.00028	20.6	0.7	0.0021	17.7	0.7	2.3	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|564288108|ref|YP_008874310.1|	-	0.00083	18.8	0.4	0.0011	18.4	0.4	1.2	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|564288108|ref|YP_008874310.1|	-	0.0065	16.6	0.0	0.011	15.8	0.0	1.3	1	0	0	1	1	1	1	PglZ	domain
Pectate_lyase_3	PF12708.7	gi|564288302|ref|YP_008874311.1|	-	6.7e-16	58.8	9.1	7e-15	55.4	0.2	3.6	1	1	0	3	3	3	2	Pectate	lyase	superfamily	protein
Beta_helix	PF13229.6	gi|564288302|ref|YP_008874311.1|	-	6.6e-06	26.1	12.5	0.0014	18.5	9.3	3.0	1	1	1	2	2	2	2	Right	handed	beta	helix	region
End_N_terminal	PF12218.8	gi|564288302|ref|YP_008874311.1|	-	0.026	14.2	0.2	0.069	12.9	0.2	1.7	1	0	0	1	1	1	0	N	terminal	extension	of	bacteriophage	endosialidase
Sulfatase	PF00884.23	gi|564288303|ref|YP_008874312.1|	-	0.00015	21.3	0.2	0.00019	21.0	0.2	1.1	1	0	0	1	1	1	1	Sulfatase
SCPU	PF05229.15	gi|564288304|ref|YP_008874313.1|	-	0.43	11.0	3.5	0.37	11.2	0.6	2.1	2	1	1	3	3	3	0	Spore	Coat	Protein	U	domain
Glycos_transf_2	PF00535.26	gi|564288109|ref|YP_008874315.1|	-	5.5e-28	97.9	1.0	7.9e-28	97.4	0.5	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288109|ref|YP_008874315.1|	-	7.8e-17	61.9	0.2	1.3e-16	61.3	0.2	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564288109|ref|YP_008874315.1|	-	1.1e-09	38.2	0.0	1.5e-09	37.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
TPR_2	PF07719.17	gi|564288109|ref|YP_008874315.1|	-	0.071	13.3	0.9	0.18	12.0	0.9	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Glyco_transf_64	PF09258.10	gi|564288109|ref|YP_008874315.1|	-	0.17	11.2	0.0	0.24	10.7	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	64	domain
Epimerase_2	PF02350.19	gi|564288110|ref|YP_008874316.1|	-	1.7e-102	342.8	0.0	2e-102	342.6	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_transf_4	PF13439.6	gi|564288110|ref|YP_008874316.1|	-	0.073	13.1	0.0	0.17	11.9	0.0	1.7	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288110|ref|YP_008874316.1|	-	0.11	12.9	0.0	0.38	11.2	0.0	1.9	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
MGDG_synth	PF06925.11	gi|564288110|ref|YP_008874316.1|	-	0.22	11.6	0.0	0.44	10.6	0.0	1.5	1	0	0	1	1	1	0	Monogalactosyldiacylglycerol	(MGDG)	synthase
Glycos_transf_1	PF00534.20	gi|564288306|ref|YP_008874317.1|	-	2.6e-29	102.0	0.0	3.7e-29	101.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288306|ref|YP_008874317.1|	-	1.6e-23	83.6	0.0	3.6e-23	82.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288306|ref|YP_008874317.1|	-	1.1e-10	41.7	0.0	3.1e-10	40.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288306|ref|YP_008874317.1|	-	4.1e-07	30.6	0.6	1.4e-05	25.6	0.0	2.8	3	0	0	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288306|ref|YP_008874317.1|	-	7.7e-07	29.4	0.0	2.2e-06	28.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Hepar_II_III	PF07940.13	gi|564288307|ref|YP_008874318.1|	-	5.8e-36	124.3	2.1	1.4e-35	123.1	2.1	1.6	1	0	0	1	1	1	1	Heparinase	II/III-like	protein
Hepar_II_III_N	PF16889.5	gi|564288307|ref|YP_008874318.1|	-	1.5e-19	70.5	0.0	2.2e-19	69.9	0.0	1.1	1	0	0	1	1	1	1	Heparinase	II/III	N-terminus
Glyco_trans_1_4	PF13692.6	gi|564288111|ref|YP_008874319.1|	-	1.4e-19	70.9	0.0	2.4e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|564288111|ref|YP_008874319.1|	-	2.1e-16	60.8	0.8	3.4e-16	60.1	0.8	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|564288111|ref|YP_008874319.1|	-	2.7e-15	56.3	0.0	3.9e-15	55.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288111|ref|YP_008874319.1|	-	5.3e-11	42.8	0.1	1.7e-10	41.2	0.1	1.8	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|564288111|ref|YP_008874319.1|	-	1.2e-05	25.6	0.0	2.7e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_2	PF00535.26	gi|564288112|ref|YP_008874320.1|	-	7.1e-09	35.7	0.0	2.3e-08	34.1	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|564288112|ref|YP_008874320.1|	-	1.1e-07	31.6	0.0	0.0073	15.8	0.0	2.2	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288112|ref|YP_008874320.1|	-	5.5e-06	26.4	0.0	0.03	14.2	0.0	2.3	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|564288112|ref|YP_008874320.1|	-	0.00048	19.6	0.0	0.024	14.1	0.0	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_transf_7C	PF02709.14	gi|564288112|ref|YP_008874320.1|	-	0.00049	19.7	0.0	0.00079	19.0	0.0	1.3	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_trans_2_3	PF13632.6	gi|564288112|ref|YP_008874320.1|	-	0.00079	19.4	0.0	0.0026	17.7	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
PTS_IIB	PF02302.17	gi|564288113|ref|YP_008874321.1|	-	5.8e-17	62.2	1.6	8.1e-17	61.7	1.6	1.2	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
PEP-utilizers_C	PF02896.18	gi|564288114|ref|YP_008874322.1|	-	7.3e-106	353.6	0.0	9.8e-106	353.1	0.0	1.1	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilisers_N	PF05524.13	gi|564288114|ref|YP_008874322.1|	-	3e-24	85.4	0.2	3e-24	85.4	0.2	2.9	4	0	0	4	4	4	1	PEP-utilising	enzyme,	N-terminal
PEP-utilizers	PF00391.23	gi|564288114|ref|YP_008874322.1|	-	4.3e-22	77.6	0.4	8.5e-22	76.7	0.4	1.5	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
PTS-HPr	PF00381.19	gi|564288115|ref|YP_008874323.1|	-	5.1e-23	81.1	0.1	5.7e-23	81.0	0.1	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
PTS_EIIA_2	PF00359.22	gi|564288116|ref|YP_008874324.1|	-	8.5e-35	119.8	0.0	9.6e-35	119.6	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	2
PTS_EIIC	PF02378.18	gi|564288117|ref|YP_008874325.1|	-	3.7e-21	75.5	37.7	3.7e-21	75.5	37.7	1.9	2	0	0	2	2	2	2	Phosphotransferase	system,	EIIC
Seryl_tRNA_N	PF02403.22	gi|564288118|ref|YP_008874326.1|	-	1.6e-06	28.3	44.9	0.0012	19.0	11.1	6.0	2	2	4	6	6	6	3	Seryl-tRNA	synthetase	N-terminal	domain
DUF812	PF05667.11	gi|564288118|ref|YP_008874326.1|	-	3.8e-06	26.1	29.9	0.00013	21.0	6.1	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF812)
Spc7	PF08317.11	gi|564288118|ref|YP_008874326.1|	-	7.2e-06	25.1	48.9	0.00012	21.1	13.3	4.3	2	2	1	3	3	3	2	Spc7	kinetochore	protein
FlaC_arch	PF05377.11	gi|564288118|ref|YP_008874326.1|	-	8.7e-06	26.0	35.7	0.29	11.6	0.2	7.0	5	2	1	6	6	6	4	Flagella	accessory	protein	C	(FlaC)
TPR_MLP1_2	PF07926.12	gi|564288118|ref|YP_008874326.1|	-	1.3e-05	25.3	43.7	0.0098	16.0	12.7	4.8	2	2	2	4	4	4	2	TPR/MLP1/MLP2-like	protein
HMMR_N	PF15905.5	gi|564288118|ref|YP_008874326.1|	-	2.5e-05	23.9	33.5	0.0028	17.2	14.7	2.5	2	0	0	2	2	2	2	Hyaluronan	mediated	motility	receptor	N-terminal
EzrA	PF06160.12	gi|564288118|ref|YP_008874326.1|	-	0.00015	20.1	34.6	0.0012	17.2	15.0	2.7	2	1	0	2	2	2	2	Septation	ring	formation	regulator,	EzrA
Atg14	PF10186.9	gi|564288118|ref|YP_008874326.1|	-	0.00021	20.5	34.2	0.0013	17.9	2.1	3.7	2	2	2	4	4	4	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
GAS	PF13851.6	gi|564288118|ref|YP_008874326.1|	-	0.0005	19.5	36.4	0.038	13.3	11.4	3.8	2	2	1	3	3	3	2	Growth-arrest	specific	micro-tubule	binding
FapA	PF03961.13	gi|564288118|ref|YP_008874326.1|	-	0.0005	18.8	23.6	0.019	13.6	3.7	3.8	1	1	1	3	3	3	2	Flagellar	Assembly	Protein	A
Fib_alpha	PF08702.10	gi|564288118|ref|YP_008874326.1|	-	0.0013	18.9	28.0	1.2	9.3	4.4	4.4	4	0	0	4	4	4	2	Fibrinogen	alpha/beta	chain	family
AAA_23	PF13476.6	gi|564288118|ref|YP_008874326.1|	-	0.0017	18.9	11.5	0.0017	18.9	11.5	4.1	1	1	1	2	2	1	1	AAA	domain
NPV_P10	PF05531.12	gi|564288118|ref|YP_008874326.1|	-	0.0028	18.1	33.4	2.1	8.9	2.6	7.1	3	3	3	6	6	6	2	Nucleopolyhedrovirus	P10	protein
Golgin_A5	PF09787.9	gi|564288118|ref|YP_008874326.1|	-	0.0049	16.4	51.1	0.094	12.2	14.8	4.1	1	1	3	4	4	4	2	Golgin	subfamily	A	member	5
BLOC1_2	PF10046.9	gi|564288118|ref|YP_008874326.1|	-	0.0065	16.7	32.1	3.6	8.0	0.5	6.7	3	2	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Fez1	PF06818.15	gi|564288118|ref|YP_008874326.1|	-	0.0076	16.7	42.7	0.79	10.1	17.7	3.6	1	1	2	3	3	3	2	Fez1
AAA_13	PF13166.6	gi|564288118|ref|YP_008874326.1|	-	0.017	13.8	31.9	0.048	12.3	14.3	2.3	1	1	1	2	2	2	0	AAA	domain
Baculo_PEP_C	PF04513.12	gi|564288118|ref|YP_008874326.1|	-	0.06	13.4	27.8	0.15	12.1	2.4	5.4	2	2	2	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DivIC	PF04977.15	gi|564288118|ref|YP_008874326.1|	-	0.081	12.7	57.7	0.051	13.4	1.5	8.1	2	2	3	7	7	7	0	Septum	formation	initiator
DHR10	PF18595.1	gi|564288118|ref|YP_008874326.1|	-	0.11	12.6	66.6	0.022	14.8	12.8	5.6	2	2	3	5	5	4	0	Designed	helical	repeat	protein	10	domain
kleA_kleC	PF17383.2	gi|564288118|ref|YP_008874326.1|	-	0.13	12.6	35.6	0.041	14.2	2.9	5.7	3	2	3	6	6	6	0	Uncharacterized	KorC	regulated	protein	A
IFT57	PF10498.9	gi|564288118|ref|YP_008874326.1|	-	0.13	11.2	31.0	0.028	13.4	5.6	3.9	2	1	1	4	4	4	0	Intra-flagellar	transport	protein	57
HemX	PF04375.14	gi|564288118|ref|YP_008874326.1|	-	0.16	11.2	27.0	0.081	12.2	1.6	4.1	2	2	3	5	5	5	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
FUSC	PF04632.12	gi|564288118|ref|YP_008874326.1|	-	0.17	10.4	38.0	0.49	8.9	15.5	2.6	1	1	2	3	3	3	0	Fusaric	acid	resistance	protein	family
TMF_TATA_bd	PF12325.8	gi|564288118|ref|YP_008874326.1|	-	0.17	12.1	52.5	0.34	11.2	7.0	4.8	2	2	2	4	4	4	0	TATA	element	modulatory	factor	1	TATA	binding
DUF1664	PF07889.12	gi|564288118|ref|YP_008874326.1|	-	0.22	11.5	32.3	1.1	9.3	3.3	5.4	1	1	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
COG2	PF06148.11	gi|564288118|ref|YP_008874326.1|	-	0.3	11.2	29.3	2.4	8.3	0.5	5.3	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Shugoshin_N	PF07558.11	gi|564288118|ref|YP_008874326.1|	-	0.32	10.9	9.5	0.58	10.1	0.2	4.1	4	0	0	4	4	3	0	Shugoshin	N-terminal	coiled-coil	region
STAT_alpha	PF01017.20	gi|564288118|ref|YP_008874326.1|	-	0.34	10.8	28.1	1.6	8.6	4.9	3.5	2	2	1	3	3	3	0	STAT	protein,	all-alpha	domain
DUF4763	PF15960.5	gi|564288118|ref|YP_008874326.1|	-	0.35	10.2	30.0	2.7	7.3	1.2	4.7	3	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4763)
DUF4407	PF14362.6	gi|564288118|ref|YP_008874326.1|	-	0.4	10.0	40.5	1.8	7.8	13.7	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
CENP-F_leu_zip	PF10473.9	gi|564288118|ref|YP_008874326.1|	-	0.4	10.7	53.0	2	8.5	13.6	5.6	3	2	1	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
APG6_N	PF17675.1	gi|564288118|ref|YP_008874326.1|	-	0.4	11.2	64.4	1	9.9	7.0	5.3	2	2	3	5	5	5	0	Apg6	coiled-coil	region
ATG16	PF08614.11	gi|564288118|ref|YP_008874326.1|	-	0.46	10.7	62.0	0.062	13.5	17.5	4.3	1	1	2	4	4	4	0	Autophagy	protein	16	(ATG16)
Retrotrans_gag	PF03732.17	gi|564288118|ref|YP_008874326.1|	-	0.47	10.8	0.1	0.47	10.8	0.1	3.9	3	2	2	5	5	4	0	Retrotransposon	gag	protein
ERM	PF00769.19	gi|564288118|ref|YP_008874326.1|	-	0.53	10.0	52.0	0.11	12.3	15.2	3.5	2	2	1	3	3	3	0	Ezrin/radixin/moesin	family
Prefoldin	PF02996.17	gi|564288118|ref|YP_008874326.1|	-	0.59	10.1	34.6	0.9	9.5	0.4	7.3	3	2	4	7	7	7	0	Prefoldin	subunit
Spectrin	PF00435.21	gi|564288118|ref|YP_008874326.1|	-	0.7	10.4	37.8	0.22	12.0	2.2	5.8	2	2	4	6	6	6	0	Spectrin	repeat
Occludin_ELL	PF07303.13	gi|564288118|ref|YP_008874326.1|	-	0.75	10.6	18.9	2.5	8.9	0.5	5.3	3	2	2	5	5	5	0	Occludin	homology	domain
KASH_CCD	PF14662.6	gi|564288118|ref|YP_008874326.1|	-	0.81	9.5	43.0	2.6	7.8	20.6	3.6	2	2	1	3	3	3	0	Coiled-coil	region	of	CCDC155	or	KASH
TMF_DNA_bd	PF12329.8	gi|564288118|ref|YP_008874326.1|	-	0.88	9.6	36.3	4.1	7.5	1.2	6.0	3	2	2	6	6	6	0	TATA	element	modulatory	factor	1	DNA	binding
Filament	PF00038.21	gi|564288118|ref|YP_008874326.1|	-	0.95	9.0	52.8	2.1	7.9	6.9	3.9	2	2	1	3	3	3	0	Intermediate	filament	protein
Zw10	PF06248.13	gi|564288118|ref|YP_008874326.1|	-	0.99	7.9	22.2	0.017	13.7	4.1	3.3	2	1	1	3	3	3	0	Centromere/kinetochore	Zw10
DUF745	PF05335.13	gi|564288118|ref|YP_008874326.1|	-	1.1	8.9	10.3	0.59	9.8	0.8	3.1	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF745)
FliD_N	PF02465.18	gi|564288118|ref|YP_008874326.1|	-	1.2	9.9	9.5	50	4.7	1.5	4.8	3	2	1	4	4	3	0	Flagellar	hook-associated	protein	2	N-terminus
MAD	PF05557.13	gi|564288118|ref|YP_008874326.1|	-	1.2	7.4	45.3	0.59	8.4	17.3	2.7	2	2	0	2	2	2	0	Mitotic	checkpoint	protein
DUF4201	PF13870.6	gi|564288118|ref|YP_008874326.1|	-	1.4	8.6	39.3	0.64	9.7	5.7	4.3	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4201)
YabA	PF06156.13	gi|564288118|ref|YP_008874326.1|	-	2.5	8.8	31.8	3.4	8.4	1.7	5.2	2	2	2	4	4	4	0	Initiation	control	protein	YabA
DUF724	PF05266.14	gi|564288118|ref|YP_008874326.1|	-	2.9	7.7	32.6	0.82	9.5	6.7	4.0	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF724)
DUF3584	PF12128.8	gi|564288118|ref|YP_008874326.1|	-	3	5.2	47.7	0.75	7.2	20.6	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
Laminin_II	PF06009.12	gi|564288118|ref|YP_008874326.1|	-	3.4	7.7	30.3	0.15	12.1	5.5	3.9	2	2	1	3	3	3	0	Laminin	Domain	II
Sec34	PF04136.15	gi|564288118|ref|YP_008874326.1|	-	4.5	7.1	24.1	5.2	6.9	3.7	4.9	2	2	2	4	4	4	0	Sec34-like	family
DUF2203	PF09969.9	gi|564288118|ref|YP_008874326.1|	-	4.9	7.9	32.9	0.27	11.9	2.0	4.8	2	2	3	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
LXG	PF04740.12	gi|564288118|ref|YP_008874326.1|	-	5	6.8	25.6	0.5	10.1	2.0	4.7	2	1	1	3	3	3	0	LXG	domain	of	WXG	superfamily
Mod_r	PF07200.13	gi|564288118|ref|YP_008874326.1|	-	6.6	6.8	36.7	2.9	8.0	6.8	4.5	2	2	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
TBK1_CCD1	PF18394.1	gi|564288118|ref|YP_008874326.1|	-	6.8	6.2	24.5	0.67	9.5	5.3	3.8	2	1	1	3	3	3	0	TANK-binding	kinase	1	coiled-coil	domain	1
DUF3153	PF11353.8	gi|564288118|ref|YP_008874326.1|	-	7.6	6.1	9.2	0.3	10.6	1.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3153)
ABC_tran_CTD	PF16326.5	gi|564288118|ref|YP_008874326.1|	-	7.6	6.9	52.2	9.6	6.5	0.1	7.6	3	2	5	8	8	8	0	ABC	transporter	C-terminal	domain
Baculo_p24	PF05073.12	gi|564288118|ref|YP_008874326.1|	-	9.2	6.0	11.8	2.4	7.9	1.3	3.1	2	1	0	2	2	2	0	Baculovirus	P24	capsid	protein
Bacillus_HBL	PF05791.11	gi|564288118|ref|YP_008874326.1|	-	9.4	6.0	18.9	1.5	8.7	4.6	4.0	3	1	2	5	5	5	0	Bacillus	haemolytic	enterotoxin	(HBL)
FlxA	PF14282.6	gi|564288118|ref|YP_008874326.1|	-	9.4	6.3	23.4	0.58	10.2	0.5	4.6	2	2	1	4	4	3	0	FlxA-like	protein
SCAB-ABD	PF16711.5	gi|564288119|ref|YP_008874327.1|	-	0.029	14.3	0.2	0.081	12.8	0.2	1.8	1	0	0	1	1	1	0	Actin-binding	domain	of	plant-specific	actin-binding	protein
zinc_ribbon_4	PF13717.6	gi|564288119|ref|YP_008874327.1|	-	0.054	13.4	0.0	0.098	12.6	0.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF2951	PF11166.8	gi|564288121|ref|YP_008874329.1|	-	0.077	13.2	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2951)
DUF357	PF04010.13	gi|564288121|ref|YP_008874329.1|	-	0.1	12.7	0.1	0.52	10.4	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF357)
GCV_T	PF01571.21	gi|564288122|ref|YP_008874330.1|	-	1.2e-62	211.6	0.1	2e-62	210.9	0.1	1.4	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|564288122|ref|YP_008874330.1|	-	2.2e-43	149.2	0.1	2.2e-43	149.2	0.1	2.2	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
FAO_M	PF16350.5	gi|564288122|ref|YP_008874330.1|	-	6.8e-19	67.9	0.2	2.1e-18	66.4	0.2	1.9	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
GCV_T_C	PF08669.11	gi|564288122|ref|YP_008874330.1|	-	1.3e-10	41.1	0.0	3.1e-10	39.8	0.0	1.7	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
Pyr_redox_2	PF07992.14	gi|564288122|ref|YP_008874330.1|	-	6.7e-06	25.5	0.0	0.024	13.9	0.0	2.4	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288122|ref|YP_008874330.1|	-	2e-05	24.0	0.0	0.0086	15.4	0.0	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
SoxG	PF04268.12	gi|564288122|ref|YP_008874330.1|	-	0.00014	22.0	0.0	0.00025	21.2	0.0	1.4	1	0	0	1	1	1	1	Sarcosine	oxidase,	gamma	subunit	family
NAD_binding_9	PF13454.6	gi|564288122|ref|YP_008874330.1|	-	0.00047	20.2	0.9	0.94	9.5	0.1	3.2	3	0	0	3	3	3	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|564288122|ref|YP_008874330.1|	-	0.00086	19.5	0.0	0.0033	17.6	0.0	2.0	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|564288122|ref|YP_008874330.1|	-	0.0019	17.3	0.1	0.0032	16.6	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|564288122|ref|YP_008874330.1|	-	0.016	13.9	0.0	0.034	12.9	0.0	1.5	2	0	0	2	2	2	0	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|564288122|ref|YP_008874330.1|	-	0.17	11.2	0.1	0.51	9.6	0.0	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ETF	PF01012.21	gi|564288123|ref|YP_008874331.1|	-	7.5e-32	110.7	2.2	1.1e-31	110.2	2.2	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|564288124|ref|YP_008874332.1|	-	4.3e-33	113.2	1.0	4.3e-33	113.2	1.0	2.0	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|564288124|ref|YP_008874332.1|	-	2.7e-27	95.8	2.4	3e-27	95.7	1.6	1.5	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
Cupin_2	PF07883.11	gi|564288125|ref|YP_008874333.1|	-	0.0012	18.5	3.6	0.0017	18.1	3.6	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_7	PF12973.7	gi|564288125|ref|YP_008874333.1|	-	0.025	14.5	0.1	0.051	13.5	0.1	1.5	1	1	1	2	2	2	0	ChrR	Cupin-like	domain
FTCD_C	PF04961.12	gi|564288126|ref|YP_008874334.1|	-	2.8e-42	144.6	7.2	3.5e-42	144.2	7.2	1.1	1	0	0	1	1	1	1	Formiminotransferase-cyclodeaminase
DUF3995	PF13160.6	gi|564288126|ref|YP_008874334.1|	-	0.12	12.7	3.5	0.3	11.5	1.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3995)
MccV	PF17508.2	gi|564288126|ref|YP_008874334.1|	-	0.23	12.0	5.1	0.14	12.7	0.7	2.2	2	0	0	2	2	2	0	Microcin	V	bacteriocin
FTHFS	PF01268.19	gi|564288127|ref|YP_008874335.1|	-	7.1e-240	796.9	0.0	8e-240	796.7	0.0	1.0	1	0	0	1	1	1	1	Formate--tetrahydrofolate	ligase
Pterin_bind	PF00809.22	gi|564288128|ref|YP_008874336.1|	-	2.5e-81	272.9	0.8	4.3e-81	272.2	0.8	1.4	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|564288128|ref|YP_008874336.1|	-	5.6e-12	46.0	0.0	1.3e-11	44.9	0.0	1.7	1	1	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|564288128|ref|YP_008874336.1|	-	1.7e-06	28.2	0.0	5.5e-06	26.6	0.0	1.9	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
TPP_enzyme_N	PF02776.18	gi|564288128|ref|YP_008874336.1|	-	0.021	14.5	0.3	0.073	12.7	0.3	1.9	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
FixQ	PF05545.11	gi|564288129|ref|YP_008874337.1|	-	0.069	13.1	0.3	0.1	12.6	0.3	1.2	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Lar_restr_allev	PF14354.6	gi|564288130|ref|YP_008874338.1|	-	0.0028	18.0	9.0	0.0034	17.7	0.7	2.9	2	1	1	3	3	3	1	Restriction	alleviation	protein	Lar
OrfB_Zn_ribbon	PF07282.11	gi|564288130|ref|YP_008874338.1|	-	0.0034	17.3	5.0	0.34	10.9	0.2	2.4	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-piccolo	PF05715.13	gi|564288130|ref|YP_008874338.1|	-	0.011	15.9	0.4	0.011	15.9	0.4	2.2	2	0	0	2	2	2	0	Piccolo	Zn-finger
Zn_Tnp_IS91	PF14319.6	gi|564288130|ref|YP_008874338.1|	-	0.018	15.1	0.8	0.018	15.1	0.8	1.9	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
HypA	PF01155.19	gi|564288130|ref|YP_008874338.1|	-	0.039	14.0	7.6	0.33	11.0	3.1	2.7	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|564288130|ref|YP_008874338.1|	-	0.05	13.6	7.6	0.59	10.2	4.6	2.2	1	1	1	2	2	2	0	zinc-ribbons
zf_Rg	PF17915.1	gi|564288130|ref|YP_008874338.1|	-	0.35	10.3	2.3	0.29	10.5	0.2	1.9	1	1	1	2	2	2	0	Reverse	gyrase	zinc	finger
IBR	PF01485.21	gi|564288130|ref|YP_008874338.1|	-	0.43	10.9	10.2	8.2	6.7	4.5	2.3	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_15	PF17032.5	gi|564288130|ref|YP_008874338.1|	-	0.45	11.3	4.8	28	5.6	4.8	2.4	1	1	1	2	2	2	0	zinc-ribbon	family
DZR	PF12773.7	gi|564288130|ref|YP_008874338.1|	-	0.48	10.5	9.1	4.1	7.5	1.8	2.4	1	1	1	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|564288130|ref|YP_008874338.1|	-	0.53	9.8	6.3	2.1	7.9	0.7	3.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|564288130|ref|YP_008874338.1|	-	0.64	10.0	8.2	36	4.4	0.3	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
TRAF6_Z2	PF18048.1	gi|564288130|ref|YP_008874338.1|	-	0.77	9.9	4.3	2.8	8.1	0.1	2.8	3	0	0	3	3	3	0	TNF	receptor-associated	factor	6	zinc	finger	2
YacG	PF03884.14	gi|564288130|ref|YP_008874338.1|	-	1.2	8.9	8.8	8.9	6.1	0.6	3.5	3	1	0	3	3	3	0	DNA	gyrase	inhibitor	YacG
zf_UBZ	PF18439.1	gi|564288130|ref|YP_008874338.1|	-	4.1	7.1	10.4	7.2	6.3	0.1	3.9	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
Anti-TRAP	PF15777.5	gi|564288130|ref|YP_008874338.1|	-	6.2	6.9	10.7	1.1	9.2	3.0	2.9	2	2	1	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zf-C3HC4_3	PF13920.6	gi|564288130|ref|YP_008874338.1|	-	6.5	6.7	9.3	9.4	6.2	0.0	3.2	3	1	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C4_Topoisom	PF01396.19	gi|564288130|ref|YP_008874338.1|	-	9	6.2	8.5	9.4	6.1	0.0	3.3	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
MFS_1	PF07690.16	gi|564288131|ref|YP_008874339.1|	-	0.01	14.8	13.1	0.01	14.8	13.1	2.0	1	1	1	2	2	2	0	Major	Facilitator	Superfamily
BCCT	PF02028.17	gi|564288132|ref|YP_008874340.1|	-	6.1e-179	595.5	45.5	7e-179	595.3	45.5	1.0	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
Trp_oprn_chp	PF09534.10	gi|564288132|ref|YP_008874340.1|	-	0.53	10.1	0.0	0.53	10.1	0.0	3.2	3	0	0	3	3	3	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
TMEM72	PF16054.5	gi|564288133|ref|YP_008874341.1|	-	0.081	12.6	1.0	0.082	12.6	1.0	1.0	1	0	0	1	1	1	0	Transmembrane	protein	family	72
Usp	PF00582.26	gi|564288134|ref|YP_008874342.1|	-	4.5e-30	105.0	0.0	5.5e-30	104.7	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|564288134|ref|YP_008874342.1|	-	0.0082	15.6	0.2	0.01	15.3	0.2	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
PALP	PF00291.25	gi|564288135|ref|YP_008874343.1|	-	4.7e-78	262.6	5.7	6.4e-78	262.1	5.7	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|564288135|ref|YP_008874343.1|	-	1.4e-07	31.1	0.4	1.4e-07	31.1	0.4	2.0	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|564288135|ref|YP_008874343.1|	-	9.2e-06	26.2	1.0	2e-05	25.1	0.1	2.1	2	0	0	2	2	2	1	ACT	domain
ACT_6	PF13740.6	gi|564288135|ref|YP_008874343.1|	-	0.017	15.1	0.0	0.037	14.0	0.0	1.6	1	0	0	1	1	1	0	ACT	domain
GCV_T	PF01571.21	gi|564288136|ref|YP_008874344.1|	-	1.9e-76	256.8	0.0	2.6e-76	256.4	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|564288136|ref|YP_008874344.1|	-	2.1e-38	132.8	1.7	5.4e-38	131.5	1.5	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.11	gi|564288136|ref|YP_008874344.1|	-	7.4e-17	61.1	0.2	2.2e-16	59.6	0.1	1.9	2	0	0	2	2	2	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAO_M	PF16350.5	gi|564288136|ref|YP_008874344.1|	-	3.9e-13	49.5	0.2	1e-12	48.1	0.2	1.8	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
NAD_binding_8	PF13450.6	gi|564288136|ref|YP_008874344.1|	-	1.7e-05	25.0	0.1	6.8e-05	23.0	0.1	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
SoxG	PF04268.12	gi|564288136|ref|YP_008874344.1|	-	2.7e-05	24.3	0.0	0.00048	20.3	0.0	2.3	1	1	0	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
FAD_binding_2	PF00890.24	gi|564288136|ref|YP_008874344.1|	-	5.1e-05	22.5	0.3	9.8e-05	21.6	0.3	1.6	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288136|ref|YP_008874344.1|	-	0.00019	20.7	0.1	0.0022	17.3	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564288136|ref|YP_008874344.1|	-	0.00085	19.8	0.4	0.0063	17.0	0.4	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288136|ref|YP_008874344.1|	-	0.001	18.4	0.1	0.02	14.2	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564288136|ref|YP_008874344.1|	-	0.0014	18.3	0.0	0.0026	17.4	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ThiF	PF00899.21	gi|564288136|ref|YP_008874344.1|	-	0.0037	16.7	0.0	0.0066	15.8	0.0	1.3	1	0	0	1	1	1	1	ThiF	family
GMC_oxred_N	PF00732.19	gi|564288136|ref|YP_008874344.1|	-	0.0082	15.5	0.0	0.015	14.7	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564288136|ref|YP_008874344.1|	-	0.038	13.0	0.5	0.068	12.2	0.5	1.4	1	0	0	1	1	1	0	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|564288136|ref|YP_008874344.1|	-	0.056	12.1	0.1	2.1	6.9	0.2	2.2	2	0	0	2	2	2	0	HI0933-like	protein
Shikimate_DH	PF01488.20	gi|564288136|ref|YP_008874344.1|	-	0.071	13.2	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.18	gi|564288136|ref|YP_008874344.1|	-	0.082	13.2	0.1	0.19	12.0	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Thi4	PF01946.17	gi|564288136|ref|YP_008874344.1|	-	0.087	12.1	0.1	0.17	11.1	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
NAD_binding_9	PF13454.6	gi|564288136|ref|YP_008874344.1|	-	0.11	12.4	0.7	9.1	6.3	0.3	2.5	2	0	0	2	2	2	0	FAD-NAD(P)-binding
GCV_T	PF01571.21	gi|564288137|ref|YP_008874345.1|	-	2.5e-81	272.9	0.1	3.6e-81	272.3	0.1	1.3	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|564288137|ref|YP_008874345.1|	-	2.1e-50	172.3	0.8	4.9e-50	171.1	0.8	1.7	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.11	gi|564288137|ref|YP_008874345.1|	-	8e-15	54.5	0.0	2.5e-14	53.0	0.0	1.9	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAO_M	PF16350.5	gi|564288137|ref|YP_008874345.1|	-	2.7e-13	50.0	0.4	7.5e-13	48.6	0.4	1.8	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
SoxG	PF04268.12	gi|564288137|ref|YP_008874345.1|	-	2.5e-06	27.7	0.0	4.8e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	Sarcosine	oxidase,	gamma	subunit	family
NAD_binding_8	PF13450.6	gi|564288137|ref|YP_008874345.1|	-	3.5e-05	24.0	0.1	0.00016	21.8	0.0	2.3	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|564288137|ref|YP_008874345.1|	-	3.6e-05	24.2	0.3	0.0047	17.4	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288137|ref|YP_008874345.1|	-	4.1e-05	22.9	0.3	4.1e-05	22.9	0.3	2.1	3	0	0	3	3	3	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288137|ref|YP_008874345.1|	-	0.00013	21.3	0.7	0.0031	16.8	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|564288137|ref|YP_008874345.1|	-	0.0054	17.0	0.1	0.055	13.7	0.0	2.4	2	0	0	2	2	2	1	TrkA-N	domain
ThiF	PF00899.21	gi|564288137|ref|YP_008874345.1|	-	0.007	15.7	0.1	0.016	14.6	0.1	1.5	1	0	0	1	1	1	1	ThiF	family
Pyr_redox_3	PF13738.6	gi|564288137|ref|YP_008874345.1|	-	0.016	14.5	0.6	0.3	10.3	0.3	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564288137|ref|YP_008874345.1|	-	0.023	14.4	0.1	0.044	13.4	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Lycopene_cycl	PF05834.12	gi|564288137|ref|YP_008874345.1|	-	0.037	13.1	2.5	0.19	10.8	0.2	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
GMC_oxred_N	PF00732.19	gi|564288137|ref|YP_008874345.1|	-	0.046	13.1	0.0	0.084	12.2	0.0	1.4	1	0	0	1	1	1	0	GMC	oxidoreductase
NAD_binding_9	PF13454.6	gi|564288137|ref|YP_008874345.1|	-	0.049	13.6	0.4	8.1	6.4	0.0	3.2	3	0	0	3	3	3	0	FAD-NAD(P)-binding
HI0933_like	PF03486.14	gi|564288137|ref|YP_008874345.1|	-	0.066	11.9	0.2	0.74	8.4	0.0	2.0	2	0	0	2	2	2	0	HI0933-like	protein
AstE_AspA	PF04952.14	gi|564288138|ref|YP_008874346.1|	-	1.6e-41	142.3	0.1	1.8e-41	142.1	0.1	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
ATP-synt_ab_Xtn	PF16886.5	gi|564288138|ref|YP_008874346.1|	-	0.0016	18.3	0.0	0.0033	17.3	0.0	1.6	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
MTHFR	PF02219.17	gi|564288140|ref|YP_008874348.1|	-	1.6e-13	50.7	0.0	3.6e-13	49.5	0.0	1.6	1	1	0	1	1	1	1	Methylenetetrahydrofolate	reductase
DUF1611_N	PF17396.2	gi|564288140|ref|YP_008874348.1|	-	0.081	13.2	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
GcpE	PF04551.14	gi|564288140|ref|YP_008874348.1|	-	0.14	11.2	0.0	0.39	9.8	0.0	1.6	2	0	0	2	2	2	0	GcpE	protein
GCV_T	PF01571.21	gi|564288141|ref|YP_008874349.1|	-	4.3e-47	160.6	0.0	5.7e-47	160.2	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|564288141|ref|YP_008874349.1|	-	0.00014	21.7	0.0	0.00034	20.5	0.0	1.8	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
DHFR_1	PF00186.19	gi|564288142|ref|YP_008874350.1|	-	6e-50	169.1	0.0	7.1e-50	168.8	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
TctA	PF01970.16	gi|564288143|ref|YP_008874351.1|	-	0.0032	16.3	1.9	0.0033	16.2	1.9	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
Phage_holin_3_6	PF07332.11	gi|564288143|ref|YP_008874351.1|	-	0.18	11.8	4.0	0.22	11.5	4.0	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
HTH_10	PF04967.12	gi|564288144|ref|YP_008874352.1|	-	1e-16	60.4	0.0	1.7e-16	59.7	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564288144|ref|YP_008874352.1|	-	0.00032	20.6	0.0	0.00044	20.1	0.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|564288144|ref|YP_008874352.1|	-	0.0053	16.2	0.0	0.012	15.1	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|564288144|ref|YP_008874352.1|	-	0.017	14.6	0.0	0.049	13.2	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|564288144|ref|YP_008874352.1|	-	0.077	12.7	0.0	0.69	9.6	0.0	2.2	1	1	0	1	1	1	0	Sigma-70,	region	4
MFS_1	PF07690.16	gi|564288145|ref|YP_008874354.1|	-	2.8e-45	154.8	64.5	1.9e-36	125.8	41.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564288145|ref|YP_008874354.1|	-	0.00011	21.3	18.3	0.013	14.4	5.0	2.3	1	1	1	2	2	2	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|564288145|ref|YP_008874354.1|	-	0.84	8.4	28.6	0.023	13.6	9.0	2.5	2	1	0	2	2	2	0	Sugar	(and	other)	transporter
Aldedh	PF00171.22	gi|564288309|ref|YP_008874355.1|	-	5.5e-12	44.9	0.0	5.9e-12	44.8	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
PE	PF00934.20	gi|564288309|ref|YP_008874355.1|	-	0.11	12.9	0.0	0.13	12.6	0.0	1.1	1	0	0	1	1	1	0	PE	family
IclR	PF01614.18	gi|564288146|ref|YP_008874356.1|	-	2.4e-32	111.5	0.0	1.6e-31	108.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288146|ref|YP_008874356.1|	-	8.7e-10	38.3	0.1	5.8e-09	35.6	0.0	2.4	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288146|ref|YP_008874356.1|	-	3.6e-05	23.6	0.4	0.00011	22.0	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564288146|ref|YP_008874356.1|	-	7.4e-05	22.5	0.0	0.00026	20.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564288146|ref|YP_008874356.1|	-	0.00015	21.6	0.0	0.00043	20.1	0.0	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|564288146|ref|YP_008874356.1|	-	0.00019	21.3	0.0	0.00036	20.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564288146|ref|YP_008874356.1|	-	0.0004	20.4	0.0	0.0012	18.9	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288146|ref|YP_008874356.1|	-	0.00063	19.2	0.0	0.0016	17.9	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|564288146|ref|YP_008874356.1|	-	0.0094	16.3	0.0	0.021	15.2	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|564288146|ref|YP_008874356.1|	-	0.037	14.2	0.0	0.12	12.5	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoC	PF09012.10	gi|564288146|ref|YP_008874356.1|	-	0.064	13.3	0.0	0.15	12.2	0.0	1.6	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF742	PF05331.11	gi|564288146|ref|YP_008874356.1|	-	0.085	12.7	0.0	0.18	11.6	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
Diacid_rec	PF05651.13	gi|564288146|ref|YP_008874356.1|	-	0.13	11.9	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	Putative	sugar	diacid	recognition
ABC_tran	PF00005.27	gi|564288147|ref|YP_008874357.1|	-	2.9e-32	112.0	0.0	5.1e-32	111.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|564288147|ref|YP_008874357.1|	-	2.5e-10	40.4	0.1	9e-10	38.6	0.1	2.0	1	0	0	1	1	1	1	TOBE	domain
OB_MalK	PF17912.1	gi|564288147|ref|YP_008874357.1|	-	3e-09	37.6	0.2	2.3e-08	34.7	0.0	2.7	3	0	0	3	3	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|564288147|ref|YP_008874357.1|	-	1e-06	28.8	0.0	0.051	13.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|564288147|ref|YP_008874357.1|	-	1.8e-05	25.0	0.1	0.00031	21.0	0.0	2.6	2	0	0	2	2	2	1	TOBE	domain
SMC_N	PF02463.19	gi|564288147|ref|YP_008874357.1|	-	2.7e-05	23.7	0.7	0.00012	21.6	0.7	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564288147|ref|YP_008874357.1|	-	0.0013	19.1	0.3	0.0029	18.0	0.3	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564288147|ref|YP_008874357.1|	-	0.0015	18.8	0.2	0.0038	17.5	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288147|ref|YP_008874357.1|	-	0.0018	18.2	0.1	0.0044	17.0	0.1	1.6	1	0	0	1	1	1	1	RsgA	GTPase
Rad17	PF03215.15	gi|564288147|ref|YP_008874357.1|	-	0.0029	17.6	0.0	0.0041	17.1	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_28	PF13521.6	gi|564288147|ref|YP_008874357.1|	-	0.011	16.0	0.4	0.12	12.6	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
AAA_25	PF13481.6	gi|564288147|ref|YP_008874357.1|	-	0.017	14.7	0.0	0.73	9.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
CysA_C_terminal	PF17850.1	gi|564288147|ref|YP_008874357.1|	-	0.025	15.1	3.2	0.21	12.2	0.1	3.5	4	0	0	4	4	4	0	CysA	C-terminal	regulatory	domain
AAA	PF00004.29	gi|564288147|ref|YP_008874357.1|	-	0.032	14.7	0.8	0.18	12.2	0.8	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|564288147|ref|YP_008874357.1|	-	0.032	13.9	0.1	0.067	12.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564288147|ref|YP_008874357.1|	-	0.067	13.7	0.0	0.19	12.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|564288147|ref|YP_008874357.1|	-	0.079	12.2	0.1	0.35	10.1	0.0	1.9	2	0	0	2	2	2	0	Zeta	toxin
PhoH	PF02562.16	gi|564288147|ref|YP_008874357.1|	-	0.083	12.3	0.5	0.79	9.1	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
AAA_33	PF13671.6	gi|564288147|ref|YP_008874357.1|	-	0.089	12.9	0.7	0.18	11.9	0.7	1.7	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|564288147|ref|YP_008874357.1|	-	0.093	12.6	0.6	0.51	10.2	0.0	2.2	2	0	0	2	2	2	0	NTPase
AAA_29	PF13555.6	gi|564288147|ref|YP_008874357.1|	-	0.094	12.5	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATPase_2	PF01637.18	gi|564288147|ref|YP_008874357.1|	-	0.11	12.3	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_23	PF13476.6	gi|564288147|ref|YP_008874357.1|	-	0.12	12.9	0.4	0.37	11.3	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|564288147|ref|YP_008874357.1|	-	0.15	11.6	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564288147|ref|YP_008874357.1|	-	0.19	11.4	0.0	0.8	9.3	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|564288147|ref|YP_008874357.1|	-	0.2	12.1	0.0	0.69	10.3	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
Creatininase	PF02633.14	gi|564288148|ref|YP_008874358.1|	-	8.9e-62	208.7	0.4	1e-61	208.5	0.4	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
SBP_bac_1	PF01547.25	gi|564288149|ref|YP_008874359.1|	-	4.2e-41	141.9	0.1	6.1e-41	141.4	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|564288149|ref|YP_008874359.1|	-	6.5e-37	127.9	0.0	9.4e-37	127.3	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|564288149|ref|YP_008874359.1|	-	1.6e-05	24.4	0.1	0.14	11.6	0.2	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|564288149|ref|YP_008874359.1|	-	0.0026	17.6	0.0	0.0061	16.3	0.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564288149|ref|YP_008874359.1|	-	0.015	15.1	0.1	0.033	14.1	0.1	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|564288150|ref|YP_008874360.1|	-	1.1e-20	74.1	17.1	1.1e-20	74.1	15.9	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564288151|ref|YP_008874361.1|	-	9e-16	58.1	18.5	9e-16	58.1	18.5	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF5036	PF16439.5	gi|564288152|ref|YP_008874362.1|	-	0.06	13.1	0.0	0.091	12.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5036)
MR_MLE_C	PF13378.6	gi|564288153|ref|YP_008874363.1|	-	7.5e-49	166.3	0.1	1e-48	165.8	0.1	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564288153|ref|YP_008874363.1|	-	1.7e-16	60.5	0.0	4.8e-16	59.0	0.0	1.7	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
DHNA	PF04038.12	gi|564288153|ref|YP_008874363.1|	-	0.092	13.3	0.1	1.2	9.6	0.1	2.3	2	0	0	2	2	2	0	Dihydroneopterin	aldolase
adh_short_C2	PF13561.6	gi|564288154|ref|YP_008874364.1|	-	3.3e-62	210.1	0.2	3.9e-62	209.9	0.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564288154|ref|YP_008874364.1|	-	3.1e-49	167.1	0.3	3.8e-49	166.8	0.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564288154|ref|YP_008874364.1|	-	6.4e-12	45.8	0.2	9.7e-12	45.2	0.2	1.4	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564288154|ref|YP_008874364.1|	-	3.6e-05	23.3	0.2	0.0002	20.9	0.2	2.1	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|564288154|ref|YP_008874364.1|	-	0.0016	18.4	0.6	0.0025	17.7	0.4	1.4	1	1	0	1	1	1	1	NAD(P)H-binding
EccE	PF11203.8	gi|564288154|ref|YP_008874364.1|	-	0.028	14.8	1.9	0.6	10.5	0.2	2.2	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
RmlD_sub_bind	PF04321.17	gi|564288154|ref|YP_008874364.1|	-	0.049	12.7	0.0	0.081	12.0	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
3HCDH_N	PF02737.18	gi|564288154|ref|YP_008874364.1|	-	0.086	12.7	0.3	0.23	11.3	0.0	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Polysacc_synt_2	PF02719.15	gi|564288154|ref|YP_008874364.1|	-	0.12	11.5	0.0	0.21	10.7	0.0	1.4	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Ribonuc_L-PSP	PF01042.21	gi|564288155|ref|YP_008874365.1|	-	6.3e-41	139.2	0.0	6.9e-41	139.0	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
HAD	PF12710.7	gi|564288156|ref|YP_008874366.1|	-	1.4e-10	41.9	0.2	2.1e-10	41.3	0.2	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564288156|ref|YP_008874366.1|	-	3.7e-06	27.4	0.3	0.0004	20.7	0.3	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564288156|ref|YP_008874366.1|	-	4e-05	23.8	0.5	0.0036	17.4	0.5	2.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
UMPH-1	PF05822.12	gi|564288156|ref|YP_008874366.1|	-	0.081	12.4	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
EamA	PF00892.20	gi|564288157|ref|YP_008874367.1|	-	6.8e-33	113.7	34.7	1.8e-16	60.6	19.6	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
RseC_MucC	PF04246.12	gi|564288157|ref|YP_008874367.1|	-	0.012	15.6	1.0	0.012	15.6	1.0	4.0	1	1	3	5	5	5	0	Positive	regulator	of	sigma(E),	RseC/MucC
SDF	PF00375.18	gi|564288158|ref|YP_008874368.1|	-	6.4e-113	377.7	37.4	7.2e-113	377.5	37.4	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
Hexapep	PF00132.24	gi|564288159|ref|YP_008874369.1|	-	2.3e-11	42.9	3.5	8.4e-07	28.5	2.3	2.6	2	1	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.14	gi|564288159|ref|YP_008874369.1|	-	8e-05	23.0	0.0	0.00015	22.1	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.6	gi|564288159|ref|YP_008874369.1|	-	0.0031	17.2	1.2	0.0031	17.2	1.2	2.4	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
DUF1996	PF09362.10	gi|564288159|ref|YP_008874369.1|	-	0.11	12.5	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1996)
zf-RING_7	PF02591.15	gi|564288160|ref|YP_008874370.1|	-	0.044	14.0	1.8	0.21	11.8	0.2	2.2	2	1	0	2	2	2	0	C4-type	zinc	ribbon	domain
DUF3268	PF11672.8	gi|564288160|ref|YP_008874370.1|	-	0.18	12.1	1.0	0.23	11.8	0.1	1.5	1	1	1	2	2	2	0	zinc-finger-containing	domain
THF_DHG_CYH_C	PF02882.19	gi|564288161|ref|YP_008874371.1|	-	8.4e-66	220.2	1.5	1.2e-65	219.8	1.5	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|564288161|ref|YP_008874371.1|	-	6e-34	116.8	0.0	9.1e-34	116.2	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
Chorismate_bind	PF00425.18	gi|564288162|ref|YP_008874372.1|	-	5.8e-100	334.1	0.0	1.6e-99	332.7	0.0	1.7	2	1	1	3	3	3	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|564288162|ref|YP_008874372.1|	-	1.8e-08	34.7	0.0	4.9e-08	33.3	0.0	1.7	1	0	0	1	1	1	1	Anthranilate	synthase	component	I,	N	terminal	region
YqgC	PF17430.2	gi|564288162|ref|YP_008874372.1|	-	0.047	13.8	0.1	0.14	12.3	0.1	1.8	1	0	0	1	1	1	0	Uncharacterized	YqgC-like
DUF3484	PF11983.8	gi|564288162|ref|YP_008874372.1|	-	0.12	13.5	0.1	0.34	12.0	0.1	1.8	1	0	0	1	1	1	0	Membrane-attachment	and	polymerisation-promoting	switch
GATase	PF00117.28	gi|564288163|ref|YP_008874373.1|	-	5.8e-46	156.7	0.0	6.5e-46	156.5	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|564288163|ref|YP_008874373.1|	-	1.4e-07	31.5	0.8	6e-07	29.4	0.8	1.8	1	1	0	1	1	1	1	Peptidase	C26
Peripla_BP_2	PF01497.18	gi|564288163|ref|YP_008874373.1|	-	0.019	14.5	0.0	0.034	13.7	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein
BCCT	PF02028.17	gi|564288164|ref|YP_008874374.1|	-	9.4e-132	439.9	43.7	1.1e-131	439.6	43.7	1.1	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
Pox_A9	PF04835.12	gi|564288164|ref|YP_008874374.1|	-	0.015	15.4	1.6	0.088	13.0	0.0	2.6	2	0	0	2	2	2	0	A9	protein	conserved	region
TrkA_N	PF02254.18	gi|564288165|ref|YP_008874375.1|	-	1.3e-26	93.2	2.3	2.1e-26	92.5	2.3	1.4	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|564288165|ref|YP_008874375.1|	-	4.6e-14	52.1	7.5	4.6e-14	52.1	7.5	3.1	4	1	0	4	4	4	1	Ion	channel
Ion_trans	PF00520.31	gi|564288165|ref|YP_008874375.1|	-	0.0016	17.7	0.2	0.003	16.8	0.2	1.5	1	1	0	1	1	1	1	Ion	transport	protein
tRNA-synt_2_TM	PF16995.5	gi|564288165|ref|YP_008874375.1|	-	0.011	15.4	8.3	0.016	14.9	7.9	1.6	1	1	0	1	1	1	0	Transmembrane	region	of	lysyl-tRNA	synthetase
NAD_binding_7	PF13241.6	gi|564288165|ref|YP_008874375.1|	-	0.89	10.0	3.6	0.21	12.0	0.3	1.6	2	0	0	2	2	2	0	Putative	NAD(P)-binding
EamA	PF00892.20	gi|564288166|ref|YP_008874376.1|	-	4.3e-12	46.4	19.3	4.8e-12	46.2	19.3	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
DUF1129	PF06570.11	gi|564288166|ref|YP_008874376.1|	-	3.9	6.9	8.2	4.9	6.6	1.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
Ribonuc_L-PSP	PF01042.21	gi|564288167|ref|YP_008874377.1|	-	3.4e-37	127.2	0.0	3.8e-37	127.0	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.6	gi|564288167|ref|YP_008874377.1|	-	0.015	15.4	0.0	0.021	15.0	0.0	1.3	1	0	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
DUF695	PF05117.12	gi|564288168|ref|YP_008874378.1|	-	0.075	13.2	0.0	0.1	12.8	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF695)
NADH_4Fe-4S	PF10589.9	gi|564288169|ref|YP_008874379.1|	-	4.7e-18	65.0	0.0	8.8e-18	64.2	0.0	1.5	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Complex1_51K	PF01512.17	gi|564288169|ref|YP_008874379.1|	-	3.9e-16	59.3	0.0	6.1e-16	58.6	0.0	1.3	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
SLBB	PF10531.9	gi|564288169|ref|YP_008874379.1|	-	0.012	15.5	0.0	0.39	10.6	0.0	2.7	2	0	0	2	2	2	0	SLBB	domain
HMA	PF00403.26	gi|564288169|ref|YP_008874379.1|	-	0.11	13.0	1.2	1.7	9.1	0.1	3.0	3	0	0	3	3	3	0	Heavy-metal-associated	domain
Molybdopterin	PF00384.22	gi|564288170|ref|YP_008874380.1|	-	6.2e-83	279.1	0.0	7.7e-83	278.8	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564288170|ref|YP_008874380.1|	-	8.5e-34	115.9	0.0	1.5e-33	115.1	0.0	1.4	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Fer2_4	PF13510.6	gi|564288170|ref|YP_008874380.1|	-	1.1e-27	95.9	0.2	2.7e-27	94.6	0.2	1.8	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|564288170|ref|YP_008874380.1|	-	3.4e-12	45.7	0.8	3.4e-12	45.7	0.8	2.5	2	0	0	2	2	2	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Molybdop_Fe4S4	PF04879.16	gi|564288170|ref|YP_008874380.1|	-	2.9e-09	36.8	0.1	1.1e-08	34.9	0.1	2.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_21	PF14697.6	gi|564288170|ref|YP_008874380.1|	-	4.9e-09	36.2	8.9	4.9e-09	36.2	8.9	2.8	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564288170|ref|YP_008874380.1|	-	5.4e-09	36.5	15.2	3.6e-08	33.9	8.7	3.6	4	1	0	4	4	3	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564288170|ref|YP_008874380.1|	-	3.5e-07	29.8	20.6	0.00017	21.2	1.0	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564288170|ref|YP_008874380.1|	-	5.8e-06	26.2	12.2	5.9e-05	23.0	3.0	3.7	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|564288170|ref|YP_008874380.1|	-	5.9e-06	27.1	5.6	0.0017	19.3	0.1	3.6	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|564288170|ref|YP_008874380.1|	-	2.9e-05	24.4	8.0	2.9e-05	24.4	8.0	3.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564288170|ref|YP_008874380.1|	-	4.4e-05	23.6	10.0	4.4e-05	23.6	10.0	3.9	2	1	3	5	5	4	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564288170|ref|YP_008874380.1|	-	0.00016	21.7	13.2	0.00016	21.7	13.2	3.5	4	1	1	5	5	4	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|564288170|ref|YP_008874380.1|	-	0.002	18.3	13.1	0.038	14.2	1.5	2.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564288170|ref|YP_008874380.1|	-	0.01	15.9	2.8	0.01	15.9	2.8	4.5	5	0	0	5	5	4	0	4Fe-4S	binding	domain
CDC48_N	PF02359.18	gi|564288170|ref|YP_008874380.1|	-	0.055	13.7	0.0	0.13	12.4	0.0	1.7	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
NIPSNAP	PF07978.13	gi|564288170|ref|YP_008874380.1|	-	0.17	12.1	0.0	0.58	10.4	0.0	1.9	1	0	0	1	1	1	0	NIPSNAP
Fer4_15	PF13459.6	gi|564288170|ref|YP_008874380.1|	-	0.17	12.6	18.3	0.11	13.3	3.5	4.6	3	1	1	4	4	4	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|564288170|ref|YP_008874380.1|	-	0.42	11.5	16.1	0.36	11.7	1.3	3.8	4	0	0	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|564288170|ref|YP_008874380.1|	-	0.53	10.9	15.6	2.3	8.8	4.1	3.0	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Creatininase	PF02633.14	gi|564288171|ref|YP_008874381.1|	-	1.5e-68	230.9	2.0	1.7e-68	230.7	2.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
CPBP	PF02517.16	gi|564288172|ref|YP_008874382.1|	-	5.7e-14	52.3	8.5	5.7e-14	52.3	8.5	2.8	2	1	2	4	4	4	1	CPBP	intramembrane	metalloprotease
Peptidase_S8	PF00082.22	gi|564288310|ref|YP_008874383.1|	-	3.8e-17	62.5	2.7	1.5e-15	57.3	0.0	2.7	2	1	0	2	2	2	2	Subtilase	family
HTH_20	PF12840.7	gi|564288173|ref|YP_008874384.1|	-	3.8e-14	52.5	0.0	6.4e-14	51.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288173|ref|YP_008874384.1|	-	6.6e-07	29.1	0.0	1.3e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564288173|ref|YP_008874384.1|	-	4.2e-06	26.2	0.0	7e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564288173|ref|YP_008874384.1|	-	0.12	12.2	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
GerE	PF00196.19	gi|564288173|ref|YP_008874384.1|	-	0.17	11.5	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_5	PF01022.20	gi|564288173|ref|YP_008874384.1|	-	0.18	11.7	0.0	0.33	10.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Ribosomal_L21p	PF00829.21	gi|564288174|ref|YP_008874385.1|	-	0.0039	17.4	0.6	2.2	8.6	0.0	3.3	3	0	0	3	3	3	1	Ribosomal	prokaryotic	L21	protein
Excalibur	PF05901.11	gi|564288174|ref|YP_008874385.1|	-	0.0064	17.1	0.1	1.1	9.9	0.0	3.6	3	0	0	3	3	3	1	Excalibur	calcium-binding	domain
YpM	PF09144.10	gi|564288174|ref|YP_008874385.1|	-	0.0081	16.3	0.2	0.19	11.9	0.1	2.4	2	0	0	2	2	2	1	Yersinia	pseudo-tuberculosis	mitogen
RNase_II_C_S1	PF18614.1	gi|564288174|ref|YP_008874385.1|	-	0.015	15.2	5.3	1.9	8.5	0.0	4.3	4	0	0	4	4	4	0	RNase	II-type	exonuclease	C-terminal	S1	domain
NusG_II	PF07009.11	gi|564288174|ref|YP_008874385.1|	-	0.14	12.4	0.1	13	6.1	0.0	3.0	2	1	1	3	3	3	0	NusG	domain	II
AglB_L1	PF18079.1	gi|564288174|ref|YP_008874385.1|	-	1.5	9.2	6.7	1.3	9.3	0.2	3.7	4	1	0	4	4	4	0	Archaeal	glycosylation	protein	B	long	peripheral	domain
PRC	PF05239.16	gi|564288175|ref|YP_008874386.1|	-	1.9e-09	37.5	0.0	2.3e-09	37.2	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
CopD	PF05425.13	gi|564288312|ref|YP_008874388.1|	-	0.00014	22.2	16.5	0.0082	16.5	9.7	2.3	1	1	1	2	2	2	2	Copper	resistance	protein	D
DUF4149	PF13664.6	gi|564288312|ref|YP_008874388.1|	-	0.13	12.5	9.8	0.16	12.3	6.4	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
Fe_dep_repress	PF01325.19	gi|564288176|ref|YP_008874389.1|	-	4.7e-15	55.5	0.1	6.8e-15	55.0	0.1	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|564288176|ref|YP_008874389.1|	-	1.3e-06	28.2	0.0	2.3e-06	27.4	0.0	1.4	1	1	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564288176|ref|YP_008874389.1|	-	2.8e-05	24.0	0.0	4.8e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564288176|ref|YP_008874389.1|	-	0.0002	21.2	0.0	0.0003	20.7	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288176|ref|YP_008874389.1|	-	0.0014	19.1	0.0	0.0022	18.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|564288176|ref|YP_008874389.1|	-	0.0031	17.0	0.0	0.0044	16.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rio2_N	PF09202.11	gi|564288176|ref|YP_008874389.1|	-	0.012	15.8	0.0	0.016	15.4	0.0	1.2	1	0	0	1	1	1	0	Rio2,	N-terminal
Rrf2	PF02082.20	gi|564288176|ref|YP_008874389.1|	-	0.019	15.3	0.0	0.031	14.6	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Put_DNA-bind_N	PF06971.13	gi|564288176|ref|YP_008874389.1|	-	0.067	13.2	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_12	PF08461.10	gi|564288176|ref|YP_008874389.1|	-	0.073	13.0	0.0	0.12	12.4	0.0	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
GntR	PF00392.21	gi|564288176|ref|YP_008874389.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Topoisom_bac	PF01131.20	gi|564288176|ref|YP_008874389.1|	-	0.14	11.2	0.0	0.16	11.0	0.0	1.1	1	0	0	1	1	1	0	DNA	topoisomerase
TrmB	PF01978.19	gi|564288176|ref|YP_008874389.1|	-	0.15	12.0	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_13	PF11972.8	gi|564288176|ref|YP_008874389.1|	-	0.19	11.8	0.0	0.55	10.3	0.0	1.7	1	1	1	2	2	2	0	HTH	DNA	binding	domain
DUF505	PF04458.12	gi|564288176|ref|YP_008874389.1|	-	0.2	10.0	0.0	0.24	9.7	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF2249	PF10006.9	gi|564288177|ref|YP_008874390.1|	-	9.3e-82	268.9	16.5	9.2e-28	95.9	0.5	4.1	4	0	0	4	4	4	4	Uncharacterized	conserved	protein	(DUF2249)
Hemerythrin	PF01814.23	gi|564288178|ref|YP_008874391.1|	-	8.6e-20	71.7	20.0	8.6e-20	71.7	20.0	1.7	1	1	1	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
ScdA_N	PF04405.14	gi|564288178|ref|YP_008874391.1|	-	3.5e-18	65.0	1.3	4.3e-18	64.7	0.1	1.8	2	0	0	2	2	2	1	Domain	of	Unknown	function	(DUF542)
CorA	PF01544.18	gi|564288178|ref|YP_008874391.1|	-	3e-05	23.5	6.5	3e-05	23.5	6.5	1.5	1	1	1	2	2	2	1	CorA-like	Mg2+	transporter	protein
DUF1858	PF08984.11	gi|564288178|ref|YP_008874391.1|	-	0.0073	16.5	0.0	0.15	12.3	0.0	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF1858)
DLP_helical	PF18709.1	gi|564288178|ref|YP_008874391.1|	-	0.011	15.0	2.6	0.014	14.6	1.2	1.9	1	1	1	2	2	2	0	Dynamin-like	helical	domain
ERp29	PF07749.12	gi|564288178|ref|YP_008874391.1|	-	0.021	15.7	3.1	0.058	14.3	0.4	2.5	1	1	1	2	2	2	0	Endoplasmic	reticulum	protein	ERp29,	C-terminal	domain
DinB	PF05163.12	gi|564288178|ref|YP_008874391.1|	-	0.056	13.4	8.0	0.032	14.2	5.8	1.7	1	1	0	1	1	1	0	DinB	family
Prefoldin	PF02996.17	gi|564288178|ref|YP_008874391.1|	-	0.059	13.3	1.1	2.5	8.0	0.0	3.2	2	2	1	3	3	3	0	Prefoldin	subunit
DUF3038	PF11237.8	gi|564288178|ref|YP_008874391.1|	-	0.063	13.3	0.4	0.12	12.4	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3038)
RasGAP_C	PF03836.15	gi|564288178|ref|YP_008874391.1|	-	0.063	13.4	3.5	0.11	12.6	0.7	2.5	1	1	1	2	2	2	0	RasGAP	C-terminus
Utp12	PF04003.12	gi|564288178|ref|YP_008874391.1|	-	0.092	13.1	0.4	0.32	11.3	0.0	2.1	3	0	0	3	3	3	0	Dip2/Utp12	Family
SesA	PF17107.5	gi|564288178|ref|YP_008874391.1|	-	0.11	12.6	1.0	0.26	11.5	0.5	1.9	1	1	0	1	1	1	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
Exonuc_VII_L	PF02601.15	gi|564288178|ref|YP_008874391.1|	-	0.12	12.0	2.9	0.21	11.2	2.9	1.5	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
SHE3	PF17078.5	gi|564288178|ref|YP_008874391.1|	-	0.15	11.8	4.7	0.21	11.3	1.2	2.3	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
ImpA_N	PF06812.12	gi|564288178|ref|YP_008874391.1|	-	0.41	10.8	5.3	22	5.2	0.0	3.6	2	1	0	2	2	2	0	ImpA,	N-terminal,	type	VI	secretion	system
FapA	PF03961.13	gi|564288178|ref|YP_008874391.1|	-	0.58	8.7	2.5	6.7	5.2	0.9	2.0	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
DUF1664	PF07889.12	gi|564288178|ref|YP_008874391.1|	-	1.2	9.2	2.7	18	5.4	1.7	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|564288178|ref|YP_008874391.1|	-	7.3	5.4	14.1	12	4.7	9.0	2.4	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF4404	PF14357.6	gi|564288178|ref|YP_008874391.1|	-	7.5	7.3	15.6	1.3	9.7	5.1	2.8	2	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4404)
TetR_C_6	PF13977.6	gi|564288180|ref|YP_008874393.1|	-	5.9e-22	78.1	0.8	5.9e-22	78.1	0.8	1.7	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564288180|ref|YP_008874393.1|	-	4.4e-10	39.2	0.7	8e-10	38.4	0.7	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|564288180|ref|YP_008874393.1|	-	1.8e-05	25.0	0.2	5e-05	23.5	0.0	1.9	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|564288180|ref|YP_008874393.1|	-	0.013	16.2	0.0	0.027	15.1	0.0	1.6	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564288180|ref|YP_008874393.1|	-	0.014	15.4	0.4	0.052	13.6	0.1	2.3	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HAD_2	PF13419.6	gi|564288180|ref|YP_008874393.1|	-	0.016	15.3	0.3	0.061	13.4	0.3	1.8	1	1	1	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Sigma70_r4	PF04545.16	gi|564288180|ref|YP_008874393.1|	-	0.037	13.5	0.0	0.067	12.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
TetR_C_17	PF17922.1	gi|564288180|ref|YP_008874393.1|	-	0.064	13.4	0.0	0.18	11.9	0.0	1.7	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564288180|ref|YP_008874393.1|	-	0.087	12.9	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_6	PF13977.6	gi|564288181|ref|YP_008874394.1|	-	1.7e-15	57.2	2.3	1.7e-15	57.2	2.3	1.7	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564288181|ref|YP_008874394.1|	-	7.9e-14	51.2	0.3	1.5e-13	50.3	0.3	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_11	PF16859.5	gi|564288181|ref|YP_008874394.1|	-	0.00035	20.9	1.9	0.00075	19.8	1.9	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564288181|ref|YP_008874394.1|	-	0.00047	20.2	0.8	0.00082	19.4	0.2	1.8	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|564288181|ref|YP_008874394.1|	-	0.00065	20.0	0.3	0.0033	17.7	0.1	2.4	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|564288181|ref|YP_008874394.1|	-	0.0018	18.3	0.1	0.008	16.3	0.0	2.0	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564288181|ref|YP_008874394.1|	-	0.12	12.4	0.1	0.25	11.4	0.1	1.8	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
MatE	PF01554.18	gi|564288182|ref|YP_008874395.1|	-	1.3e-64	216.7	34.1	7.8e-36	123.2	16.0	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|564288182|ref|YP_008874395.1|	-	0.00079	19.5	42.7	0.033	14.2	20.9	4.8	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Methyltransf_11	PF08241.12	gi|564288183|ref|YP_008874396.1|	-	2.6e-21	76.1	0.0	1.1e-20	74.0	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288183|ref|YP_008874396.1|	-	6.3e-20	71.7	0.0	7.8e-20	71.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288183|ref|YP_008874396.1|	-	7.4e-19	68.3	0.0	3.4e-18	66.2	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288183|ref|YP_008874396.1|	-	5.9e-14	52.1	0.0	1.1e-13	51.2	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288183|ref|YP_008874396.1|	-	1.1e-13	51.1	0.0	2.2e-13	50.1	0.0	1.4	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|564288183|ref|YP_008874396.1|	-	1.4e-12	48.2	0.0	3.3e-12	47.0	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288183|ref|YP_008874396.1|	-	0.00098	18.7	0.0	0.0023	17.5	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.15	gi|564288183|ref|YP_008874396.1|	-	0.011	15.6	0.0	0.019	14.9	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
PrmA	PF06325.13	gi|564288183|ref|YP_008874396.1|	-	0.034	13.5	0.0	0.045	13.1	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
MetW	PF07021.12	gi|564288183|ref|YP_008874396.1|	-	0.068	12.8	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_24	PF13578.6	gi|564288183|ref|YP_008874396.1|	-	0.1	13.7	0.0	0.21	12.7	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|564288183|ref|YP_008874396.1|	-	0.17	11.6	0.0	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NodS	PF05401.11	gi|564288183|ref|YP_008874396.1|	-	0.18	11.4	0.0	0.27	10.8	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
RrnaAD	PF00398.20	gi|564288183|ref|YP_008874396.1|	-	0.19	10.8	0.0	0.3	10.1	0.0	1.4	1	1	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
DREV	PF05219.12	gi|564288183|ref|YP_008874396.1|	-	0.19	10.8	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
AIM24	PF01987.17	gi|564288184|ref|YP_008874397.1|	-	3.8e-28	98.7	0.3	4.4e-28	98.4	0.3	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
PP_kinase_C_1	PF17941.1	gi|564288185|ref|YP_008874398.1|	-	2.8e-69	231.9	0.0	5.3e-69	231.0	0.0	1.4	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain	1
PP_kinase_C	PF13090.6	gi|564288185|ref|YP_008874398.1|	-	1.3e-63	213.6	0.0	1.4e-61	206.9	0.0	2.5	2	1	0	2	2	2	2	Polyphosphate	kinase	C-terminal	domain	2
PP_kinase	PF02503.17	gi|564288185|ref|YP_008874398.1|	-	4.1e-60	202.8	0.7	6.7e-60	202.1	0.7	1.3	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.6	gi|564288185|ref|YP_008874398.1|	-	9.7e-36	122.4	0.1	2.7e-35	120.9	0.0	1.9	2	0	0	2	2	2	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.6	gi|564288185|ref|YP_008874398.1|	-	2.1e-12	47.1	0.0	1.2e-06	28.5	0.1	2.7	3	0	0	3	3	3	2	PLD-like	domain
Metallophos	PF00149.28	gi|564288186|ref|YP_008874399.1|	-	7.1e-13	49.5	0.1	1e-12	49.0	0.1	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|564288186|ref|YP_008874399.1|	-	2.6e-07	31.0	0.0	6.6e-07	29.7	0.0	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF5533	PF17685.1	gi|564288187|ref|YP_008874401.1|	-	0.29	11.5	2.0	0.31	11.4	2.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5533)
DUF3487	PF11990.8	gi|564288187|ref|YP_008874401.1|	-	3.1	7.7	5.5	4.5	7.2	5.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF726	PF05277.12	gi|564288188|ref|YP_008874402.1|	-	2.1e-14	53.3	0.0	2.5e-14	53.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF726)
DUF900	PF05990.12	gi|564288188|ref|YP_008874402.1|	-	6e-12	45.6	0.0	8.2e-12	45.1	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
Abhydrolase_6	PF12697.7	gi|564288188|ref|YP_008874402.1|	-	0.00044	20.9	8.8	0.00073	20.2	8.8	1.5	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Lipase	PF00151.19	gi|564288188|ref|YP_008874402.1|	-	0.016	14.5	0.0	0.024	13.9	0.0	1.1	1	0	0	1	1	1	0	Lipase
LCAT	PF02450.15	gi|564288188|ref|YP_008874402.1|	-	0.036	13.2	0.0	0.045	12.9	0.0	1.1	1	0	0	1	1	1	0	Lecithin:cholesterol	acyltransferase
Tudor_4	PF18358.1	gi|564288188|ref|YP_008874402.1|	-	0.096	12.3	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	Histone	methyltransferase	Tudor	domain
CAF1A	PF12253.8	gi|564288188|ref|YP_008874402.1|	-	0.14	12.3	0.1	0.26	11.5	0.1	1.4	1	0	0	1	1	1	0	Chromatin	assembly	factor	1	subunit	A
Methyltransf_25	PF13649.6	gi|564288189|ref|YP_008874403.1|	-	4.2e-12	46.6	0.0	6.2e-12	46.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288189|ref|YP_008874403.1|	-	1.6e-09	38.3	0.0	2.6e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288189|ref|YP_008874403.1|	-	3e-09	36.9	0.0	7.1e-09	35.7	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|564288189|ref|YP_008874403.1|	-	1.8e-07	30.8	0.0	2.2e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Ubie_methyltran	PF01209.18	gi|564288189|ref|YP_008874403.1|	-	2.4e-07	30.3	0.0	3.3e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_15	PF09445.10	gi|564288189|ref|YP_008874403.1|	-	2.5e-06	27.1	0.0	3.1e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_31	PF13847.6	gi|564288189|ref|YP_008874403.1|	-	1.3e-05	25.0	0.0	1.7e-05	24.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288189|ref|YP_008874403.1|	-	0.00018	22.2	0.0	0.00034	21.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288189|ref|YP_008874403.1|	-	0.00025	20.7	0.0	0.00036	20.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|564288189|ref|YP_008874403.1|	-	0.00073	19.3	0.0	0.001	18.8	0.0	1.1	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
PCMT	PF01135.19	gi|564288189|ref|YP_008874403.1|	-	0.0096	15.7	0.0	0.013	15.2	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Met_10	PF02475.16	gi|564288189|ref|YP_008874403.1|	-	0.053	13.3	0.0	0.068	12.9	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
PrmA	PF06325.13	gi|564288189|ref|YP_008874403.1|	-	0.12	11.7	0.0	0.16	11.3	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
PIN	PF01850.21	gi|564288190|ref|YP_008874404.1|	-	4.9e-10	40.0	2.9	5.6e-10	39.8	2.9	1.0	1	0	0	1	1	1	1	PIN	domain
COX1	PF00115.20	gi|564288192|ref|YP_008874406.1|	-	7e-145	483.2	61.7	7e-145	483.2	61.7	1.6	2	0	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Cupin_2	PF07883.11	gi|564288193|ref|YP_008874407.1|	-	2.1e-07	30.5	0.3	3.1e-07	30.0	0.3	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|564288193|ref|YP_008874407.1|	-	0.0073	16.0	0.1	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding_2	PF14525.6	gi|564288193|ref|YP_008874407.1|	-	0.011	15.4	0.1	0.013	15.2	0.1	1.1	1	0	0	1	1	1	0	AraC-binding-like	domain
Inhibitor_I78	PF11720.8	gi|564288193|ref|YP_008874407.1|	-	0.055	13.5	0.0	0.23	11.5	0.0	1.9	1	1	1	2	2	2	0	Peptidase	inhibitor	I78	family
Cupin_6	PF12852.7	gi|564288193|ref|YP_008874407.1|	-	0.066	12.9	0.4	0.077	12.7	0.4	1.3	1	1	0	1	1	1	0	Cupin
AraC_binding	PF02311.19	gi|564288193|ref|YP_008874407.1|	-	0.15	11.9	0.0	0.19	11.6	0.0	1.1	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Bac_luciferase	PF00296.20	gi|564288194|ref|YP_008874408.1|	-	2.3e-47	162.0	4.7	3.7e-47	161.3	1.7	1.9	1	1	1	2	2	2	1	Luciferase-like	monooxygenase
DUF2761	PF10959.8	gi|564288194|ref|YP_008874408.1|	-	0.02	14.9	0.3	0.094	12.7	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2761)
NAD_binding_10	PF13460.6	gi|564288195|ref|YP_008874409.1|	-	3.5e-36	124.8	2.4	4.1e-36	124.6	2.4	1.1	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|564288195|ref|YP_008874409.1|	-	2.5e-11	43.6	0.0	3.5e-11	43.1	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|564288195|ref|YP_008874409.1|	-	5.2e-09	35.5	0.0	7.1e-09	35.1	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.21	gi|564288195|ref|YP_008874409.1|	-	5.7e-07	29.3	0.0	7e-07	28.9	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Semialdhyde_dh	PF01118.24	gi|564288195|ref|YP_008874409.1|	-	6e-05	23.5	0.1	8.9e-05	22.9	0.1	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288195|ref|YP_008874409.1|	-	0.0042	17.3	0.2	0.016	15.4	0.1	2.0	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_N	PF02254.18	gi|564288195|ref|YP_008874409.1|	-	0.021	15.1	0.0	0.037	14.3	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
ADH_zinc_N	PF00107.26	gi|564288195|ref|YP_008874409.1|	-	0.059	13.3	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
HsbA	PF12296.8	gi|564288195|ref|YP_008874409.1|	-	0.067	13.6	0.5	5.5	7.4	0.1	2.3	2	0	0	2	2	2	0	Hydrophobic	surface	binding	protein	A
EamA	PF00892.20	gi|564288196|ref|YP_008874410.1|	-	7e-38	129.9	39.1	1.1e-19	71.0	16.9	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|564288196|ref|YP_008874410.1|	-	0.03	13.7	8.6	0.22	10.8	4.3	2.2	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
Aldo_ket_red	PF00248.21	gi|564288197|ref|YP_008874411.1|	-	8e-56	189.4	0.0	3.3e-53	180.8	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Peptidase_M19	PF01244.21	gi|564288198|ref|YP_008874412.1|	-	0.038	13.2	0.0	0.042	13.0	0.0	1.1	1	0	0	1	1	1	0	Membrane	dipeptidase	(Peptidase	family	M19)
Peptidase_M48	PF01435.18	gi|564288199|ref|YP_008874415.1|	-	6.9e-39	133.7	0.0	8.6e-39	133.3	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|564288199|ref|YP_008874415.1|	-	2.8e-06	26.8	0.1	6.2e-06	25.6	0.0	1.7	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|564288199|ref|YP_008874415.1|	-	0.062	13.2	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
PrgI	PF12666.7	gi|564288199|ref|YP_008874415.1|	-	4.9	7.9	8.1	19	6.0	1.7	2.3	2	0	0	2	2	2	0	PrgI	family	protein
ADH_N	PF08240.12	gi|564288200|ref|YP_008874416.1|	-	2.7e-31	107.7	3.3	5.8e-31	106.6	3.3	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288200|ref|YP_008874416.1|	-	4e-21	75.4	0.3	8.1e-21	74.4	0.3	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|564288200|ref|YP_008874416.1|	-	5.7e-06	27.4	0.6	1.1e-05	26.6	0.1	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N_2	PF16884.5	gi|564288200|ref|YP_008874416.1|	-	0.082	12.8	0.0	0.42	10.5	0.0	2.0	2	0	0	2	2	2	0	N-terminal	domain	of	oxidoreductase
DUF2318	PF10080.9	gi|564288200|ref|YP_008874416.1|	-	0.11	12.6	1.5	0.42	10.8	0.0	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2318)
TOBE_2	PF08402.10	gi|564288200|ref|YP_008874416.1|	-	0.99	9.6	5.2	0.56	10.4	0.3	3.0	3	1	0	3	3	3	0	TOBE	domain
Metallophos_2	PF12850.7	gi|564288201|ref|YP_008874417.1|	-	3.2e-12	47.0	0.0	1e-05	25.8	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564288201|ref|YP_008874417.1|	-	3.3e-10	40.8	0.5	2.4e-08	34.7	0.3	2.1	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase
HTH_20	PF12840.7	gi|564288202|ref|YP_008874418.1|	-	3.1e-06	27.2	0.1	4.8e-06	26.6	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288202|ref|YP_008874418.1|	-	0.0029	17.4	0.0	0.0054	16.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288202|ref|YP_008874418.1|	-	0.0082	16.0	0.1	0.017	15.0	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564288202|ref|YP_008874418.1|	-	0.0093	15.9	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_17	PF12728.7	gi|564288202|ref|YP_008874418.1|	-	0.012	15.8	0.0	0.023	14.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564288202|ref|YP_008874418.1|	-	0.036	13.9	0.0	0.06	13.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FAD-oxidase_C	PF02913.19	gi|564288205|ref|YP_008874421.1|	-	4e-67	226.5	0.1	9.1e-67	225.3	0.1	1.6	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|564288205|ref|YP_008874421.1|	-	8.6e-39	132.4	0.2	1.9e-38	131.4	0.2	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|564288205|ref|YP_008874421.1|	-	7.3e-09	36.1	3.6	1.4e-08	35.1	3.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|564288205|ref|YP_008874421.1|	-	6e-08	33.0	4.8	1.3e-07	32.0	4.8	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|564288205|ref|YP_008874421.1|	-	2.9e-06	27.4	0.0	0.00087	19.5	0.0	2.7	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|564288205|ref|YP_008874421.1|	-	0.00016	21.7	3.3	0.0045	17.1	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564288205|ref|YP_008874421.1|	-	0.00095	19.3	2.2	0.025	14.8	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|564288205|ref|YP_008874421.1|	-	0.07	12.5	0.0	0.13	11.6	0.0	1.4	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_7	PF12838.7	gi|564288205|ref|YP_008874421.1|	-	0.3	11.7	7.4	2.3	8.9	7.7	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564288205|ref|YP_008874421.1|	-	0.31	11.2	5.5	0.32	11.2	0.5	2.6	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564288205|ref|YP_008874421.1|	-	5.5	7.0	12.3	0.2	11.5	3.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564288205|ref|YP_008874421.1|	-	7.9	6.7	10.4	0.6	10.3	2.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Lactate_perm	PF02652.14	gi|564288206|ref|YP_008874422.1|	-	5.4e-102	342.2	42.9	1.6e-53	182.3	22.7	2.1	2	0	0	2	2	2	2	L-lactate	permease
ThuA	PF06283.11	gi|564288207|ref|YP_008874423.1|	-	2.9e-34	119.1	0.3	3.5e-34	118.9	0.3	1.1	1	0	0	1	1	1	1	Trehalose	utilisation
Pyr_redox_2	PF07992.14	gi|564288209|ref|YP_008874425.1|	-	1e-18	67.6	9.8	3.1e-12	46.3	0.5	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288209|ref|YP_008874425.1|	-	2.5e-12	46.7	0.3	9.4e-07	28.4	0.0	2.3	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|564288209|ref|YP_008874425.1|	-	6.5e-10	38.3	0.0	8.6e-05	21.4	0.0	2.3	2	1	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|564288209|ref|YP_008874425.1|	-	5.1e-09	35.8	1.0	1.4e-05	24.6	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|564288209|ref|YP_008874425.1|	-	2.5e-08	33.9	0.6	0.0012	18.6	0.0	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288209|ref|YP_008874425.1|	-	3.1e-07	29.8	1.1	2.9e-06	26.6	0.1	2.1	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564288209|ref|YP_008874425.1|	-	3.3e-05	24.0	0.0	7.7e-05	22.8	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|564288209|ref|YP_008874425.1|	-	5.7e-05	22.4	0.7	0.00031	20.0	0.1	2.1	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|564288209|ref|YP_008874425.1|	-	0.00014	21.4	0.0	0.00014	21.4	0.0	2.1	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564288209|ref|YP_008874425.1|	-	0.00046	19.5	0.0	0.0008	18.7	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.6	gi|564288209|ref|YP_008874425.1|	-	0.0011	19.0	0.2	0.87	9.6	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|564288209|ref|YP_008874425.1|	-	0.0023	17.3	0.2	0.0034	16.7	0.2	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|564288209|ref|YP_008874425.1|	-	0.0053	15.8	0.3	0.031	13.3	0.1	1.9	1	1	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|564288209|ref|YP_008874425.1|	-	0.012	16.1	0.1	0.057	14.0	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|564288209|ref|YP_008874425.1|	-	0.052	12.7	0.1	5.3	6.1	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_7	PF13241.6	gi|564288209|ref|YP_008874425.1|	-	0.11	12.9	0.1	0.24	11.9	0.1	1.7	1	1	0	1	1	1	0	Putative	NAD(P)-binding
ADH_N	PF08240.12	gi|564288210|ref|YP_008874426.1|	-	6e-27	93.7	0.9	6e-27	93.7	0.9	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288210|ref|YP_008874426.1|	-	2.7e-23	82.4	1.3	5e-23	81.5	1.3	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|564288210|ref|YP_008874426.1|	-	2.1e-07	30.6	0.4	3.2e-07	30.0	0.4	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N_assoc	PF13823.6	gi|564288210|ref|YP_008874426.1|	-	3.1e-05	23.8	0.1	3.1e-05	23.8	0.1	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N_2	PF13602.6	gi|564288210|ref|YP_008874426.1|	-	0.00031	21.8	0.1	0.00066	20.7	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|564288210|ref|YP_008874426.1|	-	0.047	13.0	2.0	0.072	12.4	2.0	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Peripla_BP_2	PF01497.18	gi|564288211|ref|YP_008874427.1|	-	1.5e-18	67.3	0.0	1.9e-18	66.9	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ABC_tran	PF00005.27	gi|564288212|ref|YP_008874428.1|	-	7.9e-30	104.2	0.0	1.2e-29	103.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288212|ref|YP_008874428.1|	-	5.3e-12	46.2	4.0	2.1e-05	24.5	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288212|ref|YP_008874428.1|	-	2.2e-11	43.6	0.0	5.7e-06	25.9	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564288212|ref|YP_008874428.1|	-	1.4e-05	24.7	0.0	2.6e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|564288212|ref|YP_008874428.1|	-	6e-05	23.3	1.8	0.00098	19.4	1.8	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564288212|ref|YP_008874428.1|	-	0.00017	21.4	0.1	0.00028	20.7	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564288212|ref|YP_008874428.1|	-	0.00021	21.5	0.1	0.001	19.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
ABC_ATPase	PF09818.9	gi|564288212|ref|YP_008874428.1|	-	0.00043	19.2	0.7	0.48	9.2	0.0	2.9	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|564288212|ref|YP_008874428.1|	-	0.00049	20.5	0.4	0.00089	19.7	0.4	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564288212|ref|YP_008874428.1|	-	0.00072	20.1	0.0	0.0013	19.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|564288212|ref|YP_008874428.1|	-	0.0021	17.8	0.0	0.0035	17.1	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.22	gi|564288212|ref|YP_008874428.1|	-	0.0032	17.1	0.1	0.0067	16.1	0.1	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|564288212|ref|YP_008874428.1|	-	0.0043	16.3	0.0	0.0079	15.5	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
RsgA_GTPase	PF03193.16	gi|564288212|ref|YP_008874428.1|	-	0.0073	16.2	0.4	0.013	15.4	0.1	1.6	2	0	0	2	2	1	1	RsgA	GTPase
NACHT	PF05729.12	gi|564288212|ref|YP_008874428.1|	-	0.0095	15.9	0.1	0.02	14.8	0.0	1.6	2	0	0	2	2	1	1	NACHT	domain
MMR_HSR1	PF01926.23	gi|564288212|ref|YP_008874428.1|	-	0.016	15.2	0.3	0.071	13.2	0.3	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA	PF00004.29	gi|564288212|ref|YP_008874428.1|	-	0.017	15.6	0.2	0.042	14.3	0.1	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|564288212|ref|YP_008874428.1|	-	0.018	14.4	0.2	0.43	9.9	0.2	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
ATP_bind_1	PF03029.17	gi|564288212|ref|YP_008874428.1|	-	0.022	14.5	0.1	1.6	8.4	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
MukB	PF04310.12	gi|564288212|ref|YP_008874428.1|	-	0.025	14.4	0.3	0.52	10.1	0.1	2.4	2	0	0	2	2	2	0	MukB	N-terminal
AAA_25	PF13481.6	gi|564288212|ref|YP_008874428.1|	-	0.031	13.9	0.9	0.087	12.4	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|564288212|ref|YP_008874428.1|	-	0.035	14.2	0.0	0.087	12.9	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
cobW	PF02492.19	gi|564288212|ref|YP_008874428.1|	-	0.035	13.7	0.5	0.064	12.8	0.1	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.6	gi|564288212|ref|YP_008874428.1|	-	0.04	13.6	0.1	0.39	10.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|564288212|ref|YP_008874428.1|	-	0.051	13.5	0.0	0.078	12.9	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Mg_chelatase	PF01078.21	gi|564288212|ref|YP_008874428.1|	-	0.054	12.9	0.1	0.28	10.6	0.0	2.0	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Cytidylate_kin	PF02224.18	gi|564288212|ref|YP_008874428.1|	-	0.055	13.2	0.1	0.12	12.1	0.1	1.7	1	1	0	1	1	1	0	Cytidylate	kinase
RNA_helicase	PF00910.22	gi|564288212|ref|YP_008874428.1|	-	0.055	13.9	0.0	0.097	13.1	0.0	1.5	1	1	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|564288212|ref|YP_008874428.1|	-	0.058	13.3	0.8	1.8	8.5	0.0	2.2	2	0	0	2	2	2	0	NTPase
AAA_18	PF13238.6	gi|564288212|ref|YP_008874428.1|	-	0.065	13.8	0.3	0.23	12.0	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|564288212|ref|YP_008874428.1|	-	0.069	13.1	0.1	0.2	11.6	0.0	1.7	2	0	0	2	2	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_28	PF13521.6	gi|564288212|ref|YP_008874428.1|	-	0.081	13.2	0.1	0.18	12.0	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|564288212|ref|YP_008874428.1|	-	0.095	12.6	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_7	PF12775.7	gi|564288212|ref|YP_008874428.1|	-	0.16	11.5	0.0	0.25	10.8	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
KAP_NTPase	PF07693.14	gi|564288212|ref|YP_008874428.1|	-	0.22	10.7	0.6	0.92	8.7	0.6	1.8	1	1	0	1	1	1	0	KAP	family	P-loop	domain
Rad17	PF03215.15	gi|564288212|ref|YP_008874428.1|	-	0.24	11.3	0.4	0.61	10.0	0.0	1.7	2	0	0	2	2	2	0	Rad17	P-loop	domain
FecCD	PF01032.18	gi|564288213|ref|YP_008874429.1|	-	9.1e-89	297.5	35.7	1.1e-88	297.2	35.7	1.1	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|564288213|ref|YP_008874429.1|	-	0.00041	19.9	11.9	0.00041	19.9	11.9	2.4	1	1	0	2	2	2	1	ABC	3	transport	family
Pyr_redox_2	PF07992.14	gi|564288214|ref|YP_008874430.1|	-	7.9e-07	28.6	0.0	1.1e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288214|ref|YP_008874430.1|	-	2.7e-05	23.6	0.2	0.049	12.9	0.0	2.6	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288214|ref|YP_008874430.1|	-	0.00011	21.5	1.5	0.00014	21.1	0.2	1.8	2	1	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|564288214|ref|YP_008874430.1|	-	0.00011	21.4	1.4	0.00066	18.9	0.1	2.1	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|564288214|ref|YP_008874430.1|	-	0.0015	17.3	0.0	0.0087	14.8	0.0	1.9	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|564288214|ref|YP_008874430.1|	-	0.002	18.3	0.2	0.0048	17.1	0.2	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|564288214|ref|YP_008874430.1|	-	0.0023	17.4	0.8	0.0023	17.4	0.8	1.7	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564288214|ref|YP_008874430.1|	-	0.0027	17.0	0.0	0.0054	16.0	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.19	gi|564288214|ref|YP_008874430.1|	-	0.006	15.9	1.9	0.013	14.8	0.2	2.1	1	1	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.24	gi|564288214|ref|YP_008874430.1|	-	0.0082	15.8	14.0	0.02	14.5	0.9	3.2	1	1	1	3	3	3	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564288214|ref|YP_008874430.1|	-	0.07	12.2	0.8	0.23	10.4	0.1	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|564288214|ref|YP_008874430.1|	-	0.32	11.0	5.7	0.77	9.7	0.4	2.9	3	0	0	3	3	3	0	FAD-NAD(P)-binding
RPE65	PF03055.15	gi|564288215|ref|YP_008874431.1|	-	1.3e-110	370.7	0.1	1.5e-110	370.6	0.1	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
EamA	PF00892.20	gi|564288216|ref|YP_008874432.1|	-	1.1e-38	132.5	35.4	1.4e-20	73.8	7.9	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
SLC35F	PF06027.12	gi|564288216|ref|YP_008874432.1|	-	0.088	12.3	5.8	0.32	10.5	1.6	2.2	1	1	1	2	2	2	0	Solute	carrier	family	35
zf_Rg	PF17915.1	gi|564288217|ref|YP_008874433.1|	-	0.43	10.0	8.9	1.1	8.8	0.6	2.9	1	1	1	2	2	2	0	Reverse	gyrase	zinc	finger
RNHCP	PF12647.7	gi|564288217|ref|YP_008874433.1|	-	0.45	10.5	8.0	0.1	12.6	2.3	2.3	2	1	0	2	2	2	0	RNHCP	domain
Methyltransf_25	PF13649.6	gi|564288218|ref|YP_008874434.1|	-	1.3e-15	57.9	0.0	2.1e-15	57.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288218|ref|YP_008874434.1|	-	3.4e-14	53.2	0.0	5.4e-14	52.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288218|ref|YP_008874434.1|	-	8.9e-10	38.7	0.0	1.1e-09	38.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288218|ref|YP_008874434.1|	-	2.5e-09	37.1	0.1	3.1e-09	36.8	0.1	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|564288218|ref|YP_008874434.1|	-	2.7e-08	33.6	0.0	4e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|564288218|ref|YP_008874434.1|	-	4.7e-08	33.7	0.1	7.1e-08	33.1	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|564288218|ref|YP_008874434.1|	-	0.00024	20.6	0.0	0.00025	20.5	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_24	PF13578.6	gi|564288218|ref|YP_008874434.1|	-	0.0044	18.0	0.1	0.008	17.2	0.1	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
DUF938	PF06080.12	gi|564288218|ref|YP_008874434.1|	-	0.0054	16.5	0.0	0.0076	16.0	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF938)
MTS	PF05175.14	gi|564288218|ref|YP_008874434.1|	-	0.0077	15.8	0.0	0.0096	15.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.11	gi|564288218|ref|YP_008874434.1|	-	0.017	14.1	0.0	0.022	13.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Pox_MCEL	PF03291.16	gi|564288218|ref|YP_008874434.1|	-	0.017	14.2	0.0	0.021	13.9	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
SHOCT	PF09851.9	gi|564288219|ref|YP_008874435.1|	-	1.5e-06	27.7	1.9	2.1e-06	27.3	1.9	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF4381	PF14316.6	gi|564288219|ref|YP_008874435.1|	-	0.00048	20.4	0.2	0.00058	20.1	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4381)
FtsL	PF04999.13	gi|564288219|ref|YP_008874435.1|	-	0.0025	17.8	0.0	0.003	17.5	0.0	1.2	1	0	0	1	1	1	1	Cell	division	protein	FtsL
GvpG	PF05120.12	gi|564288219|ref|YP_008874435.1|	-	0.0034	17.4	0.8	0.0051	16.8	0.8	1.3	1	0	0	1	1	1	1	Gas	vesicle	protein	G
DUF1707	PF08044.11	gi|564288219|ref|YP_008874435.1|	-	0.0071	16.4	0.5	0.011	15.8	0.5	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
PIG-P	PF08510.12	gi|564288219|ref|YP_008874435.1|	-	0.026	14.4	0.0	0.031	14.2	0.0	1.1	1	0	0	1	1	1	0	PIG-P
Phage_holin_2_2	PF10746.9	gi|564288219|ref|YP_008874435.1|	-	0.034	13.8	0.6	0.044	13.5	0.6	1.2	1	0	0	1	1	1	0	Phage	holin	T7	family,	holin	superfamily	II
VbhA	PF18495.1	gi|564288219|ref|YP_008874435.1|	-	0.042	13.7	0.6	0.062	13.2	0.6	1.3	1	0	0	1	1	1	0	Antitoxin	VbhA
CdvA	PF18822.1	gi|564288219|ref|YP_008874435.1|	-	0.054	13.3	0.1	0.065	13.1	0.1	1.1	1	0	0	1	1	1	0	CdvA-like	coiled-coil	domain
DUF2681	PF10883.8	gi|564288219|ref|YP_008874435.1|	-	0.082	13.3	0.1	0.11	12.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2681)
Pyridox_ox_2	PF12900.7	gi|564288220|ref|YP_008874436.1|	-	1.9e-14	53.8	0.2	2.3e-14	53.6	0.2	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288220|ref|YP_008874436.1|	-	0.00057	20.0	0.0	0.00084	19.5	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
FMN_bind_2	PF04299.12	gi|564288220|ref|YP_008874436.1|	-	0.1	12.3	0.0	0.13	12.0	0.0	1.3	1	1	0	1	1	1	0	Putative	FMN-binding	domain
AMP-binding	PF00501.28	gi|564288221|ref|YP_008874437.1|	-	2.9e-48	164.5	0.0	4.2e-48	164.0	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
Hemerythrin	PF01814.23	gi|564288221|ref|YP_008874437.1|	-	5.5e-09	36.7	6.6	5.5e-09	36.7	6.6	2.1	3	0	0	3	3	3	1	Hemerythrin	HHE	cation	binding	domain
AsnC_trans_reg2	PF17805.1	gi|564288221|ref|YP_008874437.1|	-	0.071	13.3	0.0	0.69	10.1	0.0	2.4	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
Phage_holin_3_6	PF07332.11	gi|564288222|ref|YP_008874438.1|	-	0.26	11.3	7.5	0.29	11.2	7.5	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DZR	PF12773.7	gi|564288223|ref|YP_008874439.1|	-	0.12	12.5	0.8	0.19	11.8	0.8	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|564288223|ref|YP_008874439.1|	-	0.23	11.5	1.6	0.57	10.2	1.6	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Rrf2	PF02082.20	gi|564288225|ref|YP_008874441.1|	-	0.035	14.4	0.2	0.11	12.9	0.2	1.8	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288225|ref|YP_008874441.1|	-	0.12	12.2	1.6	1	9.2	1.3	2.8	3	1	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288225|ref|YP_008874441.1|	-	0.19	11.5	3.3	1.4	8.8	1.1	2.7	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Amidohydro_1	PF01979.20	gi|564288226|ref|YP_008874442.1|	-	8.4e-49	166.7	0.1	9.9e-49	166.5	0.1	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564288226|ref|YP_008874442.1|	-	3e-19	69.9	2.6	6e-14	52.4	0.6	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.21	gi|564288226|ref|YP_008874442.1|	-	0.014	14.8	0.1	0.023	14.1	0.1	1.3	1	0	0	1	1	1	0	TatD	related	DNase
Amidohydro_1	PF01979.20	gi|564288227|ref|YP_008874443.1|	-	2.2e-17	63.4	0.0	4e-17	62.5	0.0	1.4	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564288227|ref|YP_008874443.1|	-	7.4e-06	25.7	11.8	0.012	15.1	3.5	3.1	2	1	1	3	3	3	3	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|564288227|ref|YP_008874443.1|	-	0.13	12.6	0.4	0.44	10.9	0.4	1.9	1	0	0	1	1	1	0	Urease	alpha-subunit,	N-terminal	domain
PALP	PF00291.25	gi|564288228|ref|YP_008874444.1|	-	4.3e-71	239.7	0.8	5.2e-71	239.4	0.8	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Bac_luciferase	PF00296.20	gi|564288229|ref|YP_008874445.1|	-	3.1e-59	200.9	0.0	3.8e-59	200.7	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF3243	PF11588.8	gi|564288229|ref|YP_008874445.1|	-	0.039	14.3	0.3	0.56	10.6	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3243)
BPD_transp_2	PF02653.16	gi|564288230|ref|YP_008874446.1|	-	6.6e-38	130.4	28.9	6.6e-38	130.4	28.9	1.5	1	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|564288231|ref|YP_008874447.1|	-	1.8e-34	119.1	32.7	1.8e-34	119.1	32.7	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|564288232|ref|YP_008874448.1|	-	2.3e-47	160.9	0.0	5e-29	101.6	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|564288232|ref|YP_008874448.1|	-	7.4e-10	39.1	0.9	0.00054	19.9	0.0	2.6	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564288232|ref|YP_008874448.1|	-	0.012	15.4	0.6	0.03	14.0	0.0	1.9	3	0	0	3	3	3	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288232|ref|YP_008874448.1|	-	0.013	15.5	0.1	0.39	10.6	0.0	2.3	2	0	0	2	2	2	0	RsgA	GTPase
AAA_27	PF13514.6	gi|564288232|ref|YP_008874448.1|	-	0.03	13.9	0.0	0.056	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564288232|ref|YP_008874448.1|	-	0.038	13.7	0.0	0.22	11.2	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564288232|ref|YP_008874448.1|	-	0.039	13.7	0.1	1.2	8.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|564288232|ref|YP_008874448.1|	-	0.064	13.8	0.0	0.11	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.18	gi|564288232|ref|YP_008874448.1|	-	0.19	11.5	0.1	0.36	10.6	0.1	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
Bmp	PF02608.14	gi|564288233|ref|YP_008874449.1|	-	4e-44	150.8	0.0	4.9e-44	150.5	0.0	1.0	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Bmp	PF02608.14	gi|564288234|ref|YP_008874450.1|	-	4.1e-43	147.5	0.0	5.1e-43	147.2	0.0	1.0	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Amidohydro_3	PF07969.11	gi|564288235|ref|YP_008874451.1|	-	2.2e-26	93.4	3.2	4.1e-25	89.2	3.2	2.3	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|564288235|ref|YP_008874451.1|	-	6.6e-12	45.4	0.0	1.2e-05	24.9	0.0	2.5	2	1	0	2	2	2	2	Amidohydrolase	family
Peptidase_M20	PF01546.28	gi|564288236|ref|YP_008874452.1|	-	2.6e-33	115.5	0.9	6e-33	114.3	0.6	1.7	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|564288236|ref|YP_008874452.1|	-	1e-07	31.8	0.0	2.1e-07	30.9	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|564288236|ref|YP_008874452.1|	-	5.1e-06	26.3	0.0	9.1e-06	25.5	0.0	1.5	1	0	0	1	1	1	1	Peptidase	family	M28
Fer2_2	PF01799.20	gi|564288237|ref|YP_008874453.1|	-	1.6e-29	101.8	0.0	3.3e-29	100.7	0.0	1.5	1	0	0	1	1	1	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|564288237|ref|YP_008874453.1|	-	4e-05	23.5	1.3	4e-05	23.5	1.3	3.1	3	1	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|564288237|ref|YP_008874453.1|	-	0.0013	18.7	0.2	0.0025	17.8	0.2	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|564288238|ref|YP_008874454.1|	-	4.3e-145	484.3	4.2	5.8e-145	483.8	4.2	1.2	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|564288238|ref|YP_008874454.1|	-	1.5e-22	80.0	1.5	2.8e-22	79.1	1.5	1.5	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
MarR_2	PF12802.7	gi|564288239|ref|YP_008874455.1|	-	3.3e-06	26.9	0.0	6e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564288239|ref|YP_008874455.1|	-	0.0056	16.6	0.0	0.0073	16.3	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288239|ref|YP_008874455.1|	-	0.0059	16.4	0.0	0.009	15.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|564288239|ref|YP_008874455.1|	-	0.019	15.1	0.0	0.03	14.5	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Shadoo	PF14999.6	gi|564288239|ref|YP_008874455.1|	-	0.035	14.2	0.2	0.046	13.8	0.2	1.1	1	0	0	1	1	1	0	Shadow	of	prion	protein,	neuroprotective
TrmB	PF01978.19	gi|564288239|ref|YP_008874455.1|	-	0.21	11.5	0.0	0.3	11.0	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|564288239|ref|YP_008874455.1|	-	0.25	11.2	0.0	0.43	10.5	0.0	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
PemK_toxin	PF02452.17	gi|564288240|ref|YP_008874456.1|	-	0.081	13.3	0.0	0.092	13.1	0.0	1.1	1	0	0	1	1	1	0	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
Fer2_2	PF01799.20	gi|564288241|ref|YP_008874457.1|	-	9.5e-33	112.1	4.9	1e-32	112.0	0.1	2.2	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|564288241|ref|YP_008874457.1|	-	1.2e-08	34.8	0.5	1.2e-08	34.8	0.5	2.5	3	2	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|564288241|ref|YP_008874457.1|	-	4.8e-06	26.5	1.1	1.1e-05	25.3	0.2	2.1	2	1	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|564288241|ref|YP_008874457.1|	-	0.0019	18.2	1.1	0.0084	16.1	1.1	2.1	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|564288242|ref|YP_008874458.1|	-	1.3e-149	499.2	0.1	1.7e-149	498.8	0.1	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|564288242|ref|YP_008874458.1|	-	4e-24	85.1	0.1	8.8e-24	84.0	0.1	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DrsE	PF02635.15	gi|564288243|ref|YP_008874459.1|	-	6.6e-31	107.1	0.0	7.4e-31	107.0	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE	PF02635.15	gi|564288244|ref|YP_008874460.1|	-	2.2e-08	34.5	0.0	2.2e-08	34.5	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DsrH	PF04077.12	gi|564288245|ref|YP_008874461.1|	-	2.5e-05	24.3	0.6	0.0002	21.4	0.6	1.9	1	1	0	1	1	1	1	DsrH	like	protein
XdhC_C	PF13478.6	gi|564288246|ref|YP_008874462.1|	-	4.1e-36	124.3	1.8	3.7e-35	121.2	0.1	2.3	2	0	0	2	2	2	1	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.16	gi|564288246|ref|YP_008874462.1|	-	1.5e-17	63.5	1.4	1.5e-17	63.5	1.4	3.6	5	1	0	5	5	5	1	XdhC	and	CoxI	family
Pyr_redox	PF00070.27	gi|564288246|ref|YP_008874462.1|	-	0.004	17.7	1.6	0.046	14.3	0.0	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564288246|ref|YP_008874462.1|	-	0.0062	15.8	2.4	0.022	14.0	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|564288246|ref|YP_008874462.1|	-	0.0093	16.2	1.7	4.4	7.6	0.0	2.7	2	0	0	2	2	2	2	TrkA-N	domain
3HCDH_N	PF02737.18	gi|564288246|ref|YP_008874462.1|	-	0.025	14.5	1.5	0.66	9.8	0.3	2.5	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|564288246|ref|YP_008874462.1|	-	0.045	13.8	1.6	0.074	13.1	0.2	1.9	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564288246|ref|YP_008874462.1|	-	0.061	12.7	0.9	7	6.0	0.0	2.7	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|564288246|ref|YP_008874462.1|	-	0.12	12.2	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	ATPsynthase	alpha/beta	subunit	N-term	extension
AIRS_C	PF02769.22	gi|564288247|ref|YP_008874463.1|	-	5.1e-19	68.9	0.0	9e-19	68.1	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|564288247|ref|YP_008874463.1|	-	2e-11	44.4	1.6	6e-11	42.8	1.6	1.8	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
TusA	PF01206.17	gi|564288248|ref|YP_008874464.1|	-	1.2e-15	57.1	0.0	1.5e-15	56.8	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|564288248|ref|YP_008874464.1|	-	0.012	15.5	0.1	0.013	15.4	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
NTP_transf_3	PF12804.7	gi|564288250|ref|YP_008874466.1|	-	3.9e-37	128.1	1.0	4.8e-37	127.8	1.0	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.19	gi|564288250|ref|YP_008874466.1|	-	0.012	15.5	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	Cytidylyltransferase
Ribonuc_L-PSP	PF01042.21	gi|564288251|ref|YP_008874467.1|	-	7.1e-38	129.3	0.1	7.9e-38	129.2	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Amidohydro_1	PF01979.20	gi|564288252|ref|YP_008874468.1|	-	5.2e-67	226.6	0.2	6.2e-67	226.3	0.2	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564288252|ref|YP_008874468.1|	-	4.4e-11	42.9	3.2	4.5e-11	42.9	0.5	2.0	2	0	0	2	2	2	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|564288252|ref|YP_008874468.1|	-	0.0024	17.3	0.0	0.004	16.5	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Ribosomal_S17e	PF00833.18	gi|564288253|ref|YP_008874469.1|	-	0.055	13.4	0.0	0.057	13.3	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	S17
NAD_synthase	PF02540.17	gi|564288254|ref|YP_008874470.1|	-	1.2e-46	158.8	0.0	1.5e-46	158.5	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
HTH_Tnp_ISL3	PF13542.6	gi|564288254|ref|YP_008874470.1|	-	0.026	13.9	0.1	0.074	12.5	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_38	PF13936.6	gi|564288254|ref|YP_008874470.1|	-	0.056	13.2	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564288254|ref|YP_008874470.1|	-	0.13	12.1	0.1	0.34	10.8	0.1	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_31	PF13560.6	gi|564288254|ref|YP_008874470.1|	-	0.22	11.9	1.4	8.7	6.8	0.1	2.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
Zn_Tnp_IS1595	PF12760.7	gi|564288255|ref|YP_008874471.1|	-	0.046	13.7	0.7	0.082	12.9	0.7	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564288255|ref|YP_008874471.1|	-	0.44	10.3	2.0	0.51	10.1	0.4	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
FlaC_arch	PF05377.11	gi|564288256|ref|YP_008874472.1|	-	1.1e-06	28.9	33.9	0.44	11.0	0.1	8.0	4	3	4	8	8	8	2	Flagella	accessory	protein	C	(FlaC)
FliJ	PF02050.16	gi|564288256|ref|YP_008874472.1|	-	2.5e-06	27.7	42.5	0.0002	21.6	7.5	5.1	4	2	1	5	5	4	2	Flagellar	FliJ	protein
TPR_MLP1_2	PF07926.12	gi|564288256|ref|YP_008874472.1|	-	1.1e-05	25.5	60.0	0.043	13.9	20.2	6.0	1	1	3	5	5	5	3	TPR/MLP1/MLP2-like	protein
ABC_tran_CTD	PF16326.5	gi|564288256|ref|YP_008874472.1|	-	2.5e-05	24.4	54.4	0.031	14.5	4.2	5.7	3	1	3	6	6	6	3	ABC	transporter	C-terminal	domain
DUF2353	PF09789.9	gi|564288256|ref|YP_008874472.1|	-	6.4e-05	22.5	14.6	6.4e-05	22.5	14.6	3.1	2	1	1	3	3	3	2	Uncharacterized	coiled-coil	protein	(DUF2353)
AAA_13	PF13166.6	gi|564288256|ref|YP_008874472.1|	-	6.7e-05	21.8	34.4	0.28	9.8	34.1	3.6	1	1	1	2	2	2	1	AAA	domain
Atg14	PF10186.9	gi|564288256|ref|YP_008874472.1|	-	0.0001	21.5	38.0	0.00071	18.8	11.9	3.0	2	1	1	3	3	3	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SMC_N	PF02463.19	gi|564288256|ref|YP_008874472.1|	-	0.00011	21.8	1.2	0.094	12.1	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
CENP-F_leu_zip	PF10473.9	gi|564288256|ref|YP_008874472.1|	-	0.00016	21.7	57.2	0.025	14.6	11.0	4.8	2	2	3	5	5	5	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
AAA_23	PF13476.6	gi|564288256|ref|YP_008874472.1|	-	0.00016	22.2	39.3	49	4.3	39.3	3.7	1	1	0	1	1	1	0	AAA	domain
Spc7	PF08317.11	gi|564288256|ref|YP_008874472.1|	-	0.00018	20.5	56.0	0.024	13.5	18.6	3.7	2	2	1	3	3	3	3	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|564288256|ref|YP_008874472.1|	-	0.00019	21.5	29.5	0.35	10.9	6.3	5.0	3	1	1	4	4	4	3	Protein	of	unknown	function	(DUF1664)
GAS	PF13851.6	gi|564288256|ref|YP_008874472.1|	-	0.0005	19.5	45.2	0.064	12.6	3.3	4.3	3	1	1	4	4	4	3	Growth-arrest	specific	micro-tubule	binding
TolA_bind_tri	PF16331.5	gi|564288256|ref|YP_008874472.1|	-	0.00079	19.5	40.9	0.034	14.2	0.2	6.4	4	3	2	6	6	6	2	TolA	binding	protein	trimerisation
DUF724	PF05266.14	gi|564288256|ref|YP_008874472.1|	-	0.001	18.9	8.5	0.001	18.9	8.5	4.0	2	2	2	4	4	4	1	Protein	of	unknown	function	(DUF724)
NPV_P10	PF05531.12	gi|564288256|ref|YP_008874472.1|	-	0.001	19.5	29.0	0.066	13.7	1.2	5.8	3	1	2	5	5	5	2	Nucleopolyhedrovirus	P10	protein
CorA	PF01544.18	gi|564288256|ref|YP_008874472.1|	-	0.0015	17.9	10.9	0.0015	17.9	10.9	4.0	1	1	3	4	4	4	1	CorA-like	Mg2+	transporter	protein
Laminin_II	PF06009.12	gi|564288256|ref|YP_008874472.1|	-	0.0022	18.0	36.7	0.046	13.7	9.4	4.2	2	2	3	5	5	5	3	Laminin	Domain	II
AAA_21	PF13304.6	gi|564288256|ref|YP_008874472.1|	-	0.0028	17.5	0.5	0.0028	17.5	0.5	1.9	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
HemX	PF04375.14	gi|564288256|ref|YP_008874472.1|	-	0.0062	15.9	8.3	0.0062	15.9	8.3	4.1	2	2	2	4	4	4	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Seryl_tRNA_N	PF02403.22	gi|564288256|ref|YP_008874472.1|	-	0.0073	16.5	40.6	0.016	15.4	2.6	5.2	3	2	1	4	4	4	2	Seryl-tRNA	synthetase	N-terminal	domain
Alpha-2-MRAP_C	PF06401.11	gi|564288256|ref|YP_008874472.1|	-	0.0077	16.2	11.9	0.0077	16.2	11.9	2.5	2	1	0	2	2	2	1	Alpha-2-macroglobulin	RAP,	C-terminal	domain
DUF5082	PF16888.5	gi|564288256|ref|YP_008874472.1|	-	0.0088	16.3	37.9	0.085	13.1	5.8	4.3	2	2	2	4	4	4	2	Domain	of	unknown	function	(DUF5082)
Fez1	PF06818.15	gi|564288256|ref|YP_008874472.1|	-	0.01	16.3	48.5	0.22	11.9	19.9	3.2	1	1	2	3	3	3	0	Fez1
TMF_TATA_bd	PF12325.8	gi|564288256|ref|YP_008874472.1|	-	0.011	16.0	55.8	0.05	13.8	7.1	5.4	2	2	3	5	5	3	0	TATA	element	modulatory	factor	1	TATA	binding
Baculo_PEP_C	PF04513.12	gi|564288256|ref|YP_008874472.1|	-	0.011	15.7	26.2	0.016	15.3	3.1	4.3	2	2	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
PspA_IM30	PF04012.12	gi|564288256|ref|YP_008874472.1|	-	0.014	15.0	51.3	0.23	11.0	21.1	3.2	2	2	0	2	2	2	0	PspA/IM30	family
Phage_GP20	PF06810.11	gi|564288256|ref|YP_008874472.1|	-	0.016	15.0	40.3	0.31	10.8	3.6	4.4	2	2	1	4	4	4	0	Phage	minor	structural	protein	GP20
Sec34	PF04136.15	gi|564288256|ref|YP_008874472.1|	-	0.018	14.9	28.5	1.5	8.7	0.1	5.4	2	2	1	5	5	5	0	Sec34-like	family
Med14	PF08638.11	gi|564288256|ref|YP_008874472.1|	-	0.022	14.2	2.1	0.39	10.1	0.1	3.2	2	1	0	3	3	3	0	Mediator	complex	subunit	MED14
Exonuc_VII_L	PF02601.15	gi|564288256|ref|YP_008874472.1|	-	0.034	13.7	35.9	0.11	12.0	12.6	2.6	1	1	0	2	2	2	0	Exonuclease	VII,	large	subunit
ApbE	PF02424.15	gi|564288256|ref|YP_008874472.1|	-	0.035	13.6	0.3	0.035	13.6	0.3	2.0	2	1	0	2	2	2	0	ApbE	family
FPP	PF05911.11	gi|564288256|ref|YP_008874472.1|	-	0.05	11.8	40.6	0.02	13.1	18.0	2.3	1	1	1	2	2	2	0	Filament-like	plant	protein,	long	coiled-coil
Tropomyosin_1	PF12718.7	gi|564288256|ref|YP_008874472.1|	-	0.07	13.3	57.0	1.7	8.8	11.3	4.2	2	2	0	2	2	2	0	Tropomyosin	like
MscS_porin	PF12795.7	gi|564288256|ref|YP_008874472.1|	-	0.13	11.8	64.3	0.23	11.0	25.7	4.2	2	2	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
MAD	PF05557.13	gi|564288256|ref|YP_008874472.1|	-	0.16	10.3	46.8	0.014	13.8	18.3	2.3	1	1	0	2	2	2	0	Mitotic	checkpoint	protein
APG6_N	PF17675.1	gi|564288256|ref|YP_008874472.1|	-	0.17	12.5	67.0	1e+02	3.4	31.5	5.3	2	2	0	2	2	2	0	Apg6	coiled-coil	region
COG2	PF06148.11	gi|564288256|ref|YP_008874472.1|	-	0.21	11.7	35.5	1.2	9.2	5.0	5.1	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF3584	PF12128.8	gi|564288256|ref|YP_008874472.1|	-	0.29	8.6	53.6	0.18	9.3	47.1	2.6	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3584)
WEMBL	PF05701.11	gi|564288256|ref|YP_008874472.1|	-	0.42	9.3	50.1	0.059	12.1	23.0	2.8	1	1	2	3	3	3	0	Weak	chloroplast	movement	under	blue	light
Filament	PF00038.21	gi|564288256|ref|YP_008874472.1|	-	0.67	9.5	53.0	0.11	12.1	33.8	3.3	1	1	2	3	3	3	0	Intermediate	filament	protein
DUF745	PF05335.13	gi|564288256|ref|YP_008874472.1|	-	0.77	9.5	37.0	0.023	14.4	12.8	3.5	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF745)
Jnk-SapK_ap_N	PF09744.9	gi|564288256|ref|YP_008874472.1|	-	0.8	9.9	60.3	0.021	15.0	16.8	4.0	2	2	2	4	4	4	0	JNK_SAPK-associated	protein-1
IFT57	PF10498.9	gi|564288256|ref|YP_008874472.1|	-	0.85	8.5	35.4	0.11	11.4	8.9	3.9	2	1	1	4	4	4	0	Intra-flagellar	transport	protein	57
ATG16	PF08614.11	gi|564288256|ref|YP_008874472.1|	-	0.98	9.6	64.5	0.75	10.0	28.8	4.2	2	2	0	2	2	2	0	Autophagy	protein	16	(ATG16)
Vac_Fusion	PF02346.16	gi|564288256|ref|YP_008874472.1|	-	0.99	9.1	14.4	31	4.3	0.0	4.8	3	1	1	4	4	4	0	Chordopoxvirus	multifunctional	envelope	protein	A27
DUF4201	PF13870.6	gi|564288256|ref|YP_008874472.1|	-	1	9.0	39.8	3	7.6	12.7	4.5	2	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4201)
MCPsignal	PF00015.21	gi|564288256|ref|YP_008874472.1|	-	1.3	8.8	21.6	0.22	11.3	1.3	3.8	2	2	3	5	5	5	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DHR10	PF18595.1	gi|564288256|ref|YP_008874472.1|	-	1.4	9.0	71.2	0.093	12.8	8.4	5.7	2	2	3	5	5	5	0	Designed	helical	repeat	protein	10	domain
Fib_alpha	PF08702.10	gi|564288256|ref|YP_008874472.1|	-	1.4	9.1	33.9	0.22	11.7	4.2	4.4	2	2	0	4	4	4	0	Fibrinogen	alpha/beta	chain	family
CALCOCO1	PF07888.11	gi|564288256|ref|YP_008874472.1|	-	2	7.2	52.4	0.039	12.8	18.9	2.6	2	1	1	3	3	3	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Cob_adeno_trans	PF01923.18	gi|564288256|ref|YP_008874472.1|	-	2.1	8.5	28.2	0.68	10.1	2.9	4.2	2	2	1	3	3	3	0	Cobalamin	adenosyltransferase
DUF2730	PF10805.8	gi|564288256|ref|YP_008874472.1|	-	2.4	8.3	27.9	4.1	7.6	1.2	5.2	3	1	3	6	6	6	0	Protein	of	unknown	function	(DUF2730)
Mod_r	PF07200.13	gi|564288256|ref|YP_008874472.1|	-	2.7	8.1	42.3	1.2	9.2	11.8	4.3	2	2	3	5	5	5	0	Modifier	of	rudimentary	(Mod(r))	protein
HIP1_clath_bdg	PF16515.5	gi|564288256|ref|YP_008874472.1|	-	3.1	8.4	53.6	2.8	8.6	10.5	4.9	2	2	3	5	5	5	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
Prefoldin_2	PF01920.20	gi|564288256|ref|YP_008874472.1|	-	3.3	7.7	51.3	1.9	8.5	4.2	7.7	3	3	4	7	7	7	0	Prefoldin	subunit
End3	PF12761.7	gi|564288256|ref|YP_008874472.1|	-	3.5	7.7	42.6	0.26	11.4	13.6	3.4	2	1	1	3	3	3	0	Actin	cytoskeleton-regulatory	complex	protein	END3
HOOK	PF05622.12	gi|564288256|ref|YP_008874472.1|	-	3.5	5.6	56.4	2.2	6.3	29.5	2.8	1	1	1	2	2	2	0	HOOK	protein
FapA	PF03961.13	gi|564288256|ref|YP_008874472.1|	-	3.9	6.0	31.6	1.9	7.0	11.2	3.8	2	2	2	4	4	4	0	Flagellar	Assembly	Protein	A
DUF948	PF06103.11	gi|564288256|ref|YP_008874472.1|	-	4	7.8	22.5	0.17	12.2	2.2	5.1	3	2	2	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF948)
Prominin	PF05478.11	gi|564288256|ref|YP_008874472.1|	-	5.2	4.9	25.6	0.18	9.8	7.0	2.8	1	1	2	3	3	3	0	Prominin
YscO-like	PF16789.5	gi|564288256|ref|YP_008874472.1|	-	6.1	6.8	43.0	5.3	7.0	11.0	4.4	2	2	1	3	3	3	0	YscO-like	protein
DUF4407	PF14362.6	gi|564288256|ref|YP_008874472.1|	-	6.7	6.0	50.9	0.29	10.4	18.7	3.4	1	1	1	2	2	1	0	Domain	of	unknown	function	(DUF4407)
Snapin_Pallidin	PF14712.6	gi|564288256|ref|YP_008874472.1|	-	6.9	7.2	35.3	7.4	7.1	2.7	4.8	3	1	0	4	4	4	0	Snapin/Pallidin
FAM76	PF16046.5	gi|564288256|ref|YP_008874472.1|	-	7.4	5.8	23.4	0.61	9.4	6.1	2.2	2	0	0	2	2	2	0	FAM76	protein
Fzo_mitofusin	PF04799.13	gi|564288256|ref|YP_008874472.1|	-	7.7	6.0	27.2	3.1	7.3	1.6	5.1	3	1	2	5	5	5	0	fzo-like	conserved	region
ApoO	PF09769.9	gi|564288256|ref|YP_008874472.1|	-	8.2	6.4	12.8	65	3.5	0.3	4.3	2	2	1	3	3	3	0	Apolipoprotein	O
BLOC1_2	PF10046.9	gi|564288256|ref|YP_008874472.1|	-	8.3	6.8	33.9	6.3	7.2	2.2	5.5	3	2	2	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Spc24	PF08286.11	gi|564288256|ref|YP_008874472.1|	-	9.4	6.5	52.5	0.12	12.6	4.7	7.1	2	2	3	5	5	5	0	Spc24	subunit	of	Ndc80
GAF_2	PF13185.6	gi|564288258|ref|YP_008874474.1|	-	1.2e-46	158.4	1.2	1.2e-15	58.0	0.2	4.4	4	0	0	4	4	4	4	GAF	domain
BAT	PF15915.5	gi|564288258|ref|YP_008874474.1|	-	8.6e-38	129.7	3.3	8.6e-38	129.7	3.3	2.1	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
GAF	PF01590.26	gi|564288258|ref|YP_008874474.1|	-	4.2e-22	79.2	0.0	7.5e-07	29.9	0.0	4.5	4	0	0	4	4	4	3	GAF	domain
Response_reg	PF00072.24	gi|564288258|ref|YP_008874474.1|	-	9.4e-20	70.9	0.0	3e-19	69.2	0.0	1.9	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_3	PF13492.6	gi|564288258|ref|YP_008874474.1|	-	1.9e-19	70.3	0.0	3.1e-05	24.3	0.0	4.6	4	0	0	4	4	4	3	GAF	domain
HTH_10	PF04967.12	gi|564288258|ref|YP_008874474.1|	-	1.2e-16	60.2	0.0	4.8e-16	58.3	0.0	2.1	2	0	0	2	2	2	1	HTH	DNA	binding	domain
OKR_DC_1_N	PF03709.15	gi|564288258|ref|YP_008874474.1|	-	8.9e-06	26.0	0.1	0.00015	22.0	0.0	3.0	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Sigma70_r4	PF04545.16	gi|564288258|ref|YP_008874474.1|	-	0.00069	19.1	0.0	0.0024	17.4	0.0	2.0	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|564288258|ref|YP_008874474.1|	-	0.0036	17.1	0.0	0.0088	15.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|564288258|ref|YP_008874474.1|	-	0.0043	17.1	0.0	0.073	13.1	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|564288258|ref|YP_008874474.1|	-	0.0088	15.6	0.0	0.038	13.5	0.0	2.1	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|564288258|ref|YP_008874474.1|	-	0.014	15.0	0.2	0.24	11.1	0.0	3.1	2	1	0	2	2	2	0	Sigma-70,	region	4
DUF1492	PF07374.11	gi|564288258|ref|YP_008874474.1|	-	0.22	11.7	2.0	22	5.3	0.0	3.1	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF1492)
DUF4349	PF14257.6	gi|564288258|ref|YP_008874474.1|	-	0.41	10.0	5.2	1.1	8.6	5.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
HalOD1	PF18545.1	gi|564288259|ref|YP_008874475.1|	-	4.4e-24	84.5	0.4	5e-24	84.3	0.4	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF4131	PF13567.6	gi|564288260|ref|YP_008874476.1|	-	0.089	12.4	2.0	3	7.5	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
HTH_11	PF08279.12	gi|564288260|ref|YP_008874476.1|	-	0.11	12.5	0.1	0.27	11.2	0.1	1.7	1	0	0	1	1	1	0	HTH	domain
DUF3071	PF11268.8	gi|564288262|ref|YP_008874478.1|	-	0.066	13.3	0.1	0.076	13.1	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
NTP_transferase	PF00483.23	gi|564288263|ref|YP_008874479.1|	-	3.1e-41	141.6	0.0	3.4e-41	141.4	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564288263|ref|YP_008874479.1|	-	2.2e-14	54.1	0.0	2.5e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|564288263|ref|YP_008874479.1|	-	6.3e-06	26.1	0.0	1.8e-05	24.6	0.0	1.7	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|564288264|ref|YP_008874481.1|	-	5.5e-09	36.0	0.4	1.7e-08	34.5	0.3	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288264|ref|YP_008874481.1|	-	3.9e-06	26.9	0.6	0.00048	20.1	0.6	2.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_7C	PF02709.14	gi|564288264|ref|YP_008874481.1|	-	9.9e-06	25.1	0.8	1.7e-05	24.4	0.8	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_2	PF10111.9	gi|564288264|ref|YP_008874481.1|	-	2.5e-05	23.9	0.0	0.12	11.9	0.0	2.3	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|564288264|ref|YP_008874481.1|	-	2.5e-05	24.3	0.0	3.7e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|564288264|ref|YP_008874481.1|	-	0.0092	15.5	0.0	0.032	13.7	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
PrpR_N	PF06506.11	gi|564288264|ref|YP_008874481.1|	-	0.096	12.3	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Propionate	catabolism	activator
PMT	PF02366.18	gi|564288265|ref|YP_008874482.1|	-	0.12	11.9	0.0	0.14	11.7	0.0	1.0	1	0	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
GFO_IDH_MocA	PF01408.22	gi|564288266|ref|YP_008874483.1|	-	4.1e-20	72.8	0.0	6.8e-20	72.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
CoA_binding_2	PF13380.6	gi|564288266|ref|YP_008874483.1|	-	0.061	13.8	0.1	0.19	12.2	0.1	1.9	1	1	0	1	1	1	0	CoA	binding	domain
DUF1349	PF07081.11	gi|564288266|ref|YP_008874483.1|	-	0.066	12.9	0.1	0.13	12.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1349)
Polysacc_synt_3	PF13440.6	gi|564288267|ref|YP_008874484.1|	-	4.5e-76	255.9	4.8	4.5e-76	255.9	4.8	1.8	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|564288267|ref|YP_008874484.1|	-	9.9e-31	107.1	7.3	9.9e-31	107.1	7.3	2.4	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|564288267|ref|YP_008874484.1|	-	4.7e-14	52.6	19.1	4.7e-14	52.6	19.1	3.1	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Insulin_TMD	PF17870.1	gi|564288267|ref|YP_008874484.1|	-	0.14	12.3	3.2	0.88	9.7	1.8	2.9	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
DUF5010_C	PF18099.1	gi|564288269|ref|YP_008874486.1|	-	8.3e-69	228.8	13.7	6.9e-24	84.1	0.8	3.6	3	0	0	3	3	3	3	DUF5010	C-terminal	domain
CBM_6	PF03422.15	gi|564288269|ref|YP_008874486.1|	-	2e-52	176.8	21.8	4.2e-19	69.1	2.4	4.3	4	0	0	4	4	4	3	Carbohydrate	binding	module	(family	6)
Glyco_hydro_114	PF03537.13	gi|564288269|ref|YP_008874486.1|	-	7.7e-05	22.1	3.6	0.58	9.4	0.0	3.3	3	0	0	3	3	3	3	Glycoside-hydrolase	family	GH114
Endotoxin_C	PF03944.14	gi|564288269|ref|YP_008874486.1|	-	0.00022	21.6	0.2	0.74	10.1	0.0	4.3	4	1	0	4	4	4	1	delta	endotoxin
TcfC	PF16967.5	gi|564288269|ref|YP_008874486.1|	-	0.017	14.6	0.0	5.8	6.5	0.0	3.6	3	0	0	3	3	3	0	E-set	like	domain
Neuraminidase	PF18413.1	gi|564288269|ref|YP_008874486.1|	-	1.2	8.7	8.5	1.5	8.5	0.3	3.1	2	1	1	3	3	3	0	Neuraminidase-like	domain
NESP55	PF06390.12	gi|564288269|ref|YP_008874486.1|	-	4.6	6.8	10.4	9.6	5.7	10.4	1.4	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Mtd_N	PF18454.1	gi|564288270|ref|YP_008874487.1|	-	0.0058	16.6	0.1	0.025	14.6	0.1	2.1	2	0	0	2	2	2	1	Major	tropism	determinant	N-terminal	domain
Glycos_transf_1	PF00534.20	gi|564288317|ref|YP_008874489.1|	-	1.3e-34	119.2	0.0	2e-34	118.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288317|ref|YP_008874489.1|	-	7.2e-31	107.4	0.0	1.3e-30	106.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288317|ref|YP_008874489.1|	-	4.1e-11	43.2	0.0	7.7e-11	42.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288317|ref|YP_008874489.1|	-	4e-09	37.1	0.0	1.7e-08	35.1	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288317|ref|YP_008874489.1|	-	2.8e-07	30.8	0.0	5.3e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Sulfatase	PF00884.23	gi|564288272|ref|YP_008874490.1|	-	1.5e-15	57.4	0.2	1.1e-13	51.2	0.1	2.3	2	0	0	2	2	2	2	Sulfatase
Phosphodiest	PF01663.22	gi|564288272|ref|YP_008874490.1|	-	0.0018	17.9	0.3	0.046	13.3	0.0	2.1	1	1	1	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|564288272|ref|YP_008874490.1|	-	0.003	16.2	0.0	0.0036	16.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
Glycos_transf_2	PF00535.26	gi|564288273|ref|YP_008874491.1|	-	4.5e-27	94.9	0.1	7.2e-27	94.3	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288273|ref|YP_008874491.1|	-	2.6e-17	63.5	0.0	3.2e-17	63.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564288273|ref|YP_008874491.1|	-	5.9e-11	42.4	0.0	8.5e-11	41.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Rhamno_transf	PF11316.8	gi|564288273|ref|YP_008874491.1|	-	0.051	13.0	0.0	0.092	12.1	0.0	1.3	1	0	0	1	1	1	0	Putative	rhamnosyl	transferase
Atu4866	PF11512.8	gi|564288273|ref|YP_008874491.1|	-	0.56	10.6	2.9	20	5.6	0.3	2.6	1	1	1	2	2	2	0	Agrobacterium	tumefaciens	protein	Atu4866
PMT_2	PF13231.6	gi|564288274|ref|YP_008874492.1|	-	0.0012	19.1	8.2	0.0012	19.1	8.2	3.2	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PTPS_related	PF10131.9	gi|564288274|ref|YP_008874492.1|	-	0.048	12.0	20.4	0.34	9.2	20.4	2.0	1	1	0	1	1	1	0	6-pyruvoyl-tetrahydropterin	synthase	related	domain;	membrane	protein
TMEM220	PF15071.6	gi|564288274|ref|YP_008874492.1|	-	1.7	9.5	7.7	13	6.6	0.3	3.4	3	1	1	4	4	4	0	Transmembrane	family	220,	helix
DUF4956	PF16316.5	gi|564288274|ref|YP_008874492.1|	-	5.1	6.7	9.0	0.42	10.3	1.6	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4956)
Tmemb_14	PF03647.13	gi|564288274|ref|YP_008874492.1|	-	5.4	7.8	24.7	0.46	11.3	3.5	4.1	3	1	1	4	4	4	0	Transmembrane	proteins	14C
Glycos_transf_1	PF00534.20	gi|564288275|ref|YP_008874493.1|	-	1.4e-32	112.6	0.0	2.4e-32	111.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288275|ref|YP_008874493.1|	-	9.7e-31	107.0	0.0	7.4e-30	104.1	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288275|ref|YP_008874493.1|	-	1.8e-27	96.4	0.1	2.9e-27	95.7	0.1	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288275|ref|YP_008874493.1|	-	4.6e-21	75.9	0.0	8.8e-21	75.0	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288275|ref|YP_008874493.1|	-	3.1e-09	37.1	0.0	5.8e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564288275|ref|YP_008874493.1|	-	5.9e-05	23.1	0.0	9.9e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_5	PF08323.11	gi|564288275|ref|YP_008874493.1|	-	0.0053	16.5	0.2	0.017	14.8	0.2	1.8	1	1	0	1	1	1	1	Starch	synthase	catalytic	domain
Asn_synthase	PF00733.21	gi|564288276|ref|YP_008874494.1|	-	1.1e-92	311.5	0.6	1.4e-92	311.2	0.6	1.1	1	0	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.6	gi|564288276|ref|YP_008874494.1|	-	8.2e-46	154.9	0.0	1.4e-45	154.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|564288276|ref|YP_008874494.1|	-	2.4e-42	144.3	0.0	4.7e-42	143.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
QueC	PF06508.13	gi|564288276|ref|YP_008874494.1|	-	0.021	14.3	0.0	0.043	13.3	0.0	1.4	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
DUF3700	PF12481.8	gi|564288276|ref|YP_008874494.1|	-	0.023	14.2	0.0	0.046	13.2	0.0	1.5	1	0	0	1	1	1	0	Aluminium	induced	protein
NAD_synthase	PF02540.17	gi|564288276|ref|YP_008874494.1|	-	0.18	10.9	0.0	0.33	10.0	0.0	1.4	1	0	0	1	1	1	0	NAD	synthase
Glycos_transf_1	PF00534.20	gi|564288277|ref|YP_008874495.1|	-	4.2e-32	111.0	0.0	7.3e-32	110.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288277|ref|YP_008874495.1|	-	1.4e-28	99.9	0.0	6.2e-28	97.9	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288277|ref|YP_008874495.1|	-	1.6e-22	80.3	0.0	2.7e-22	79.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288277|ref|YP_008874495.1|	-	7.7e-18	65.4	0.2	3.8e-17	63.2	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288277|ref|YP_008874495.1|	-	8.7e-06	26.1	0.0	2.2e-05	24.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564288277|ref|YP_008874495.1|	-	0.0013	18.8	0.0	0.002	18.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
NTP_transf_2	PF01909.23	gi|564288277|ref|YP_008874495.1|	-	0.1	12.9	0.0	0.24	11.7	0.0	1.6	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
DUF1616	PF07760.11	gi|564288318|ref|YP_008874496.1|	-	2.5e-72	243.7	3.8	2.9e-72	243.5	3.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Bax1-I	PF01027.20	gi|564288318|ref|YP_008874496.1|	-	0.0071	16.2	3.6	0.0071	16.2	3.6	1.7	1	1	0	1	1	1	1	Inhibitor	of	apoptosis-promoting	Bax1
DUF1129	PF06570.11	gi|564288318|ref|YP_008874496.1|	-	0.022	14.3	0.7	0.037	13.5	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
TMEM132D_C	PF15706.5	gi|564288318|ref|YP_008874496.1|	-	0.21	11.4	1.4	9	6.2	0.3	3.3	3	1	1	4	4	4	0	Mature	oligodendrocyte	transmembrane	protein,	TMEM132D,	C-term
7TMR-DISM_7TM	PF07695.11	gi|564288318|ref|YP_008874496.1|	-	7.4	6.4	8.7	1.6	8.6	4.6	1.9	2	1	0	2	2	2	0	7TM	diverse	intracellular	signalling
Glycos_transf_2	PF00535.26	gi|564288278|ref|YP_008874497.1|	-	4.7e-18	65.6	0.2	3.8e-16	59.4	0.2	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288278|ref|YP_008874497.1|	-	4.4e-05	23.5	0.1	0.053	13.4	0.0	2.1	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|564288278|ref|YP_008874497.1|	-	0.0023	18.4	0.0	0.0078	16.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
CARDB	PF07705.11	gi|564288279|ref|YP_008874498.1|	-	1.2e-14	54.4	24.7	5e-05	23.5	0.3	4.5	4	0	0	4	4	4	4	CARDB
Fn3-like	PF14310.6	gi|564288279|ref|YP_008874498.1|	-	0.00022	21.3	3.4	1	9.6	0.0	4.7	5	1	0	5	5	5	2	Fibronectin	type	III-like	domain
Cupredoxin_1	PF13473.6	gi|564288279|ref|YP_008874498.1|	-	0.00047	20.2	1.1	1.9	8.6	0.0	4.8	3	3	1	5	5	5	1	Cupredoxin-like	domain
DUF4832	PF16116.5	gi|564288279|ref|YP_008874498.1|	-	0.00048	20.0	6.1	0.69	9.7	0.0	3.6	3	1	0	3	3	3	2	Domain	of	unknown	function	(DUF4832)
A2M	PF00207.22	gi|564288279|ref|YP_008874498.1|	-	0.0037	17.1	1.3	4	7.3	0.0	3.7	3	0	0	3	3	3	2	Alpha-2-macroglobulin	family
DUF1616	PF07760.11	gi|564288279|ref|YP_008874498.1|	-	0.007	15.8	0.2	0.007	15.8	0.2	4.2	3	1	3	6	6	6	1	Protein	of	unknown	function	(DUF1616)
DUF3872	PF12988.7	gi|564288279|ref|YP_008874498.1|	-	0.041	13.7	0.5	11	5.8	0.0	4.0	4	1	0	4	4	4	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3872)
N_BRCA1_IG	PF16158.5	gi|564288279|ref|YP_008874498.1|	-	0.13	13.0	2.5	0.77	10.5	0.1	3.4	4	1	1	5	5	5	0	Ig-like	domain	from	next	to	BRCA1	gene
Big_7	PF17957.1	gi|564288279|ref|YP_008874498.1|	-	1.2	9.9	36.9	0.3	11.9	4.2	5.0	5	0	0	5	5	5	0	Bacterial	Ig	domain
Dicty_REP	PF05086.12	gi|564288279|ref|YP_008874498.1|	-	2.5	6.0	4.4	4.4	5.2	4.4	1.3	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
Ig_GlcNase	PF18368.1	gi|564288279|ref|YP_008874498.1|	-	5.1	7.3	7.1	3.5	7.8	0.0	3.6	3	1	1	4	4	4	0	Exo-beta-D-glucosaminidase	Ig-fold	domain
HTH_45	PF14947.6	gi|564288280|ref|YP_008874499.1|	-	3.4e-06	27.0	0.0	4e-06	26.7	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|564288280|ref|YP_008874499.1|	-	0.00032	20.7	0.4	0.0004	20.4	0.4	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288280|ref|YP_008874499.1|	-	0.0012	18.7	0.0	0.0019	18.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Replic_Relax	PF13814.6	gi|564288280|ref|YP_008874499.1|	-	0.0065	16.5	0.0	0.0074	16.4	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_Crp_2	PF13545.6	gi|564288280|ref|YP_008874499.1|	-	0.011	15.6	0.1	0.014	15.3	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288280|ref|YP_008874499.1|	-	0.014	15.8	0.2	0.02	15.4	0.2	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|564288280|ref|YP_008874499.1|	-	0.015	15.0	0.0	0.02	14.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TrmB	PF01978.19	gi|564288280|ref|YP_008874499.1|	-	0.017	15.0	0.0	0.045	13.6	0.0	1.7	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564288280|ref|YP_008874499.1|	-	0.024	14.5	0.5	0.032	14.1	0.5	1.2	1	0	0	1	1	1	0	MarR	family
HxlR	PF01638.17	gi|564288280|ref|YP_008874499.1|	-	0.045	13.6	0.1	0.062	13.2	0.1	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|564288280|ref|YP_008874499.1|	-	0.071	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|564288280|ref|YP_008874499.1|	-	0.13	12.4	0.0	0.17	12.1	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Trp_oprn_chp	PF09534.10	gi|564288281|ref|YP_008874500.1|	-	0.05	13.4	0.1	0.08	12.7	0.1	1.3	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
HTH_20	PF12840.7	gi|564288281|ref|YP_008874500.1|	-	0.065	13.3	0.0	0.17	12.0	0.0	1.7	1	1	1	2	2	2	0	Helix-turn-helix	domain
TMEM232	PF15877.5	gi|564288281|ref|YP_008874500.1|	-	0.087	11.8	0.0	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	Transmembrane	protein	family	232
DUF3040	PF11239.8	gi|564288281|ref|YP_008874500.1|	-	0.099	12.9	0.1	0.19	12.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF2892	PF11127.8	gi|564288281|ref|YP_008874500.1|	-	3.6	7.7	7.7	6.3	6.9	7.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
Amidohydro_3	PF07969.11	gi|564288282|ref|YP_008874501.1|	-	4.4e-10	39.6	0.7	0.00014	21.5	0.0	2.5	3	0	0	3	3	3	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|564288282|ref|YP_008874501.1|	-	0.00012	21.5	0.6	0.0025	17.2	0.0	2.9	2	1	0	2	2	2	1	Amidohydrolase	family
GFO_IDH_MocA	PF01408.22	gi|564288283|ref|YP_008874503.1|	-	8.4e-21	75.0	0.0	1.8e-20	74.0	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|564288283|ref|YP_008874503.1|	-	0.012	15.6	0.0	0.024	14.7	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Hydrolase_6	PF13344.6	gi|564288284|ref|YP_008874504.1|	-	3.6e-23	81.6	0.0	2.8e-22	78.7	0.0	2.4	3	0	0	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
NUDIX	PF00293.28	gi|564288284|ref|YP_008874504.1|	-	4.1e-16	59.2	0.1	7e-16	58.5	0.1	1.4	1	0	0	1	1	1	1	NUDIX	domain
Hydrolase_like	PF13242.6	gi|564288284|ref|YP_008874504.1|	-	1.5e-14	53.8	0.2	3.4e-14	52.6	0.2	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|564288284|ref|YP_008874504.1|	-	2.2e-10	41.2	0.9	9.8e-10	39.1	0.9	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564288284|ref|YP_008874504.1|	-	0.00044	20.4	0.0	0.0026	17.8	0.0	2.1	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Peripla_BP_2	PF01497.18	gi|564288285|ref|YP_008874506.1|	-	5.7e-10	39.2	0.0	1.1e-09	38.2	0.0	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
TmoB	PF06234.12	gi|564288285|ref|YP_008874506.1|	-	0.15	12.1	0.0	0.35	11.0	0.0	1.5	1	0	0	1	1	1	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
MarR_2	PF12802.7	gi|564288286|ref|YP_008874507.1|	-	7.9e-08	32.1	0.1	2.1e-07	30.7	0.1	1.7	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564288286|ref|YP_008874507.1|	-	3.9e-07	29.9	0.0	7.4e-07	29.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|564288286|ref|YP_008874507.1|	-	0.00012	21.8	0.0	0.00029	20.6	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|564288286|ref|YP_008874507.1|	-	0.00042	19.9	0.0	0.00091	18.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|564288286|ref|YP_008874507.1|	-	0.00046	19.7	0.0	0.00076	19.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564288286|ref|YP_008874507.1|	-	0.00053	19.8	0.1	0.00092	19.1	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|564288286|ref|YP_008874507.1|	-	0.0016	18.4	0.4	0.0029	17.5	0.4	1.6	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
RepL	PF05732.11	gi|564288286|ref|YP_008874507.1|	-	0.0036	16.8	0.0	0.0061	16.0	0.0	1.3	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
HTH_11	PF08279.12	gi|564288286|ref|YP_008874507.1|	-	0.0079	16.1	0.1	0.014	15.3	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
TBPIP	PF07106.13	gi|564288286|ref|YP_008874507.1|	-	0.009	15.9	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	TBPIP/Hop2	winged	helix	domain
HTH_DeoR	PF08220.12	gi|564288286|ref|YP_008874507.1|	-	0.0098	15.6	0.1	0.018	14.7	0.1	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_29	PF13551.6	gi|564288286|ref|YP_008874507.1|	-	0.011	15.7	0.0	0.15	12.1	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_27	PF13463.6	gi|564288286|ref|YP_008874507.1|	-	0.012	16.1	0.0	0.028	14.9	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|564288286|ref|YP_008874507.1|	-	0.015	15.2	0.0	0.04	13.8	0.0	1.8	1	1	1	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.6	gi|564288286|ref|YP_008874507.1|	-	0.016	15.2	0.0	0.046	13.7	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
7TM-7TMR_HD	PF07698.11	gi|564288286|ref|YP_008874507.1|	-	0.021	14.6	0.6	0.03	14.1	0.6	1.3	1	0	0	1	1	1	0	7TM	receptor	with	intracellular	HD	hydrolase
HTH_20	PF12840.7	gi|564288286|ref|YP_008874507.1|	-	0.028	14.5	0.2	0.1	12.7	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|564288286|ref|YP_008874507.1|	-	0.083	13.2	0.0	0.18	12.1	0.0	1.6	1	0	0	1	1	1	0	Penicillinase	repressor
RNA_pol_Rpc34	PF05158.12	gi|564288286|ref|YP_008874507.1|	-	0.085	12.2	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
Trp_repressor	PF01371.19	gi|564288286|ref|YP_008874507.1|	-	0.09	12.9	0.1	0.24	11.5	0.1	1.7	2	0	0	2	2	2	0	Trp	repressor	protein
DUF4367	PF14285.6	gi|564288288|ref|YP_008874509.1|	-	0.0026	18.2	0.0	0.0088	16.5	0.0	1.8	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4367)
Pap_E4	PF02711.14	gi|564288288|ref|YP_008874509.1|	-	2	9.4	3.9	9.3	7.3	1.7	2.4	2	0	0	2	2	2	0	E4	protein
Oxidored_q6	PF01058.22	gi|564288289|ref|YP_008874510.1|	-	1e-21	77.1	0.2	1.5e-21	76.6	0.2	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
HTH_10	PF04967.12	gi|564288290|ref|YP_008874511.1|	-	5.5e-17	61.3	0.0	8.7e-17	60.7	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_1	PF00126.27	gi|564288290|ref|YP_008874511.1|	-	0.0028	17.6	0.0	0.0052	16.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR_2	PF12802.7	gi|564288290|ref|YP_008874511.1|	-	0.003	17.4	0.1	0.0072	16.2	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564288290|ref|YP_008874511.1|	-	0.003	17.6	0.0	0.024	14.7	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|564288290|ref|YP_008874511.1|	-	0.0041	16.8	0.0	0.014	15.1	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
GerE	PF00196.19	gi|564288290|ref|YP_008874511.1|	-	0.0056	16.2	0.0	0.02	14.5	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
HTH_38	PF13936.6	gi|564288290|ref|YP_008874511.1|	-	0.0058	16.4	0.0	0.021	14.6	0.0	1.9	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288290|ref|YP_008874511.1|	-	0.015	15.1	0.0	0.026	14.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|564288290|ref|YP_008874511.1|	-	0.024	14.4	0.0	0.049	13.4	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Fe_dep_repress	PF01325.19	gi|564288290|ref|YP_008874511.1|	-	0.055	13.7	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_30	PF13556.6	gi|564288290|ref|YP_008874511.1|	-	0.09	12.6	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|564288322|ref|YP_008874512.1|	-	1.2e-23	82.9	0.0	2.8e-23	81.7	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|564288322|ref|YP_008874512.1|	-	1.5e-11	45.0	0.0	1.5e-11	45.0	0.0	2.3	3	0	0	3	3	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564288322|ref|YP_008874512.1|	-	6e-09	36.3	0.7	5e-07	30.1	0.7	2.8	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564288322|ref|YP_008874512.1|	-	2.8e-08	34.2	0.8	5.9e-06	26.7	0.8	2.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATPase_2	PF01637.18	gi|564288322|ref|YP_008874512.1|	-	0.00082	19.4	2.3	0.0015	18.5	0.9	2.1	2	1	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
TniB	PF05621.11	gi|564288322|ref|YP_008874512.1|	-	0.0012	18.2	0.3	0.0089	15.4	0.0	2.3	2	0	0	2	2	2	1	Bacterial	TniB	protein
AAA_2	PF07724.14	gi|564288322|ref|YP_008874512.1|	-	0.0013	18.8	0.0	0.01	15.9	0.0	2.2	1	1	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
DUF815	PF05673.13	gi|564288322|ref|YP_008874512.1|	-	0.0021	17.3	0.0	0.0051	16.0	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|564288322|ref|YP_008874512.1|	-	0.0033	17.2	0.0	0.0078	15.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|564288322|ref|YP_008874512.1|	-	0.0052	16.5	0.1	0.02	14.6	0.0	2.1	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
T2SSE	PF00437.20	gi|564288322|ref|YP_008874512.1|	-	0.0054	15.8	0.0	0.0097	15.0	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.6	gi|564288322|ref|YP_008874512.1|	-	0.011	16.2	0.1	0.046	14.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Rad17	PF03215.15	gi|564288322|ref|YP_008874512.1|	-	0.023	14.6	0.0	1.9	8.4	0.0	2.3	2	0	0	2	2	2	0	Rad17	P-loop	domain
NB-ARC	PF00931.22	gi|564288322|ref|YP_008874512.1|	-	0.028	13.6	0.0	0.048	12.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
KAP_NTPase	PF07693.14	gi|564288322|ref|YP_008874512.1|	-	0.036	13.3	0.3	0.18	11.0	0.3	2.0	1	1	0	1	1	1	0	KAP	family	P-loop	domain
BLOC1_2	PF10046.9	gi|564288322|ref|YP_008874512.1|	-	0.057	13.7	3.4	0.15	12.4	1.2	2.5	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_assoc_2	PF16193.5	gi|564288322|ref|YP_008874512.1|	-	0.059	13.7	0.3	0.21	12.0	0.3	1.9	1	0	0	1	1	1	0	AAA	C-terminal	domain
AAA_7	PF12775.7	gi|564288322|ref|YP_008874512.1|	-	0.065	12.7	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DNA_pol3_delta2	PF13177.6	gi|564288322|ref|YP_008874512.1|	-	0.066	13.0	0.0	0.31	10.8	0.0	2.0	2	0	0	2	2	2	0	DNA	polymerase	III,	delta	subunit
ABC_tran	PF00005.27	gi|564288322|ref|YP_008874512.1|	-	0.073	13.6	0.0	0.2	12.2	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
AAA_lid_10	PF17872.1	gi|564288322|ref|YP_008874512.1|	-	0.079	13.1	0.0	0.87	9.7	0.0	2.3	2	0	0	2	2	2	0	AAA	lid	domain
DUF1759	PF03564.15	gi|564288322|ref|YP_008874512.1|	-	0.1	12.5	0.4	0.32	10.9	0.4	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1759)
TsaE	PF02367.17	gi|564288322|ref|YP_008874512.1|	-	0.1	12.6	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|564288322|ref|YP_008874512.1|	-	0.11	12.5	0.7	2.3	8.1	0.2	3.0	2	1	0	2	2	2	0	NACHT	domain
RNA_helicase	PF00910.22	gi|564288322|ref|YP_008874512.1|	-	0.16	12.3	0.0	0.45	10.9	0.0	1.8	1	0	0	1	1	1	0	RNA	helicase
AAA_24	PF13479.6	gi|564288322|ref|YP_008874512.1|	-	0.27	10.9	2.2	0.92	9.2	2.2	2.0	1	1	0	1	1	1	0	AAA	domain
MutS_III	PF05192.18	gi|564288322|ref|YP_008874512.1|	-	0.59	10.3	4.3	1.9	8.7	4.3	1.9	1	1	0	1	1	1	0	MutS	domain	III
DEAD	PF00270.29	gi|564288322|ref|YP_008874512.1|	-	0.62	9.8	4.1	13	5.5	2.7	2.7	2	1	0	2	2	2	0	DEAD/DEAH	box	helicase
DUF3422	PF11902.8	gi|564288322|ref|YP_008874512.1|	-	4.1	6.4	6.4	7.9	5.5	0.6	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3422)
Peptidase_S24	PF00717.23	gi|564288323|ref|YP_008874513.1|	-	1.3e-05	25.0	0.3	3.6e-05	23.6	0.3	1.7	1	1	0	1	1	1	1	Peptidase	S24-like
Peptidase_S24	PF00717.23	gi|564288324|ref|YP_008874514.1|	-	3e-07	30.3	0.1	6.8e-07	29.2	0.1	1.5	1	1	0	1	1	1	1	Peptidase	S24-like
Metallophos	PF00149.28	gi|564288325|ref|YP_008874515.1|	-	5.8e-12	46.5	0.8	1e-11	45.8	0.8	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
DNA_pol_E_B	PF04042.16	gi|564288325|ref|YP_008874515.1|	-	3.7e-11	42.8	0.0	5.7e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	alpha/epsilon	subunit	B
Metallophos_2	PF12850.7	gi|564288325|ref|YP_008874515.1|	-	7.9e-11	42.4	3.6	2.2e-10	41.0	3.6	1.7	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Colicin_M	PF14859.6	gi|564288325|ref|YP_008874515.1|	-	0.056	12.5	0.1	0.09	11.9	0.1	1.2	1	0	0	1	1	1	0	Colicin	M
DUF1249	PF06853.12	gi|564288325|ref|YP_008874515.1|	-	0.15	12.1	0.1	0.28	11.2	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1249)
Cys_Met_Meta_PP	PF01053.20	gi|564288326|ref|YP_008874516.1|	-	1.6e-134	448.3	0.0	1.8e-134	448.1	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|564288326|ref|YP_008874516.1|	-	7.8e-07	28.6	0.0	1.1e-06	28.0	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|564288326|ref|YP_008874516.1|	-	1e-05	25.1	0.1	1.7e-05	24.3	0.1	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|564288326|ref|YP_008874516.1|	-	0.00061	18.9	0.2	0.0012	17.9	0.0	1.5	2	0	0	2	2	2	1	Aminotransferase	class-V
SepSecS	PF05889.13	gi|564288326|ref|YP_008874516.1|	-	0.12	11.0	0.0	0.17	10.5	0.0	1.2	1	0	0	1	1	1	0	O-phosphoseryl-tRNA(Sec)	selenium	transferase,	SepSecS
RalF_SCD	PF18248.1	gi|564288326|ref|YP_008874516.1|	-	0.15	12.0	0.0	0.25	11.3	0.0	1.3	1	0	0	1	1	1	0	RalF	C-terminal	Sec-7	capping	domain
HAD	PF12710.7	gi|564288327|ref|YP_008874517.1|	-	4.6e-22	79.3	0.3	5.6e-22	79.0	0.3	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564288327|ref|YP_008874517.1|	-	3.9e-13	50.2	8.2	3e-11	44.0	3.2	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|564288327|ref|YP_008874517.1|	-	7.8e-09	35.6	0.3	5.9e-05	22.9	0.1	3.1	3	0	0	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564288327|ref|YP_008874517.1|	-	1.6e-06	28.3	0.1	1.2e-05	25.5	0.0	2.2	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Put_Phosphatase	PF06888.12	gi|564288327|ref|YP_008874517.1|	-	0.00079	18.9	0.0	0.0086	15.5	0.0	2.0	2	0	0	2	2	2	1	Putative	Phosphatase
DUF4392	PF14336.6	gi|564288327|ref|YP_008874517.1|	-	0.015	14.7	1.2	2.6	7.4	0.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4392)
Hydrolase_6	PF13344.6	gi|564288327|ref|YP_008874517.1|	-	0.028	14.5	0.0	0.13	12.4	0.0	2.1	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
UMPH-1	PF05822.12	gi|564288327|ref|YP_008874517.1|	-	0.17	11.4	0.0	0.23	10.9	0.0	1.3	1	1	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
Helicase_C_2	PF13307.6	gi|564288328|ref|YP_008874519.1|	-	4.3e-29	101.9	0.0	1e-28	100.7	0.0	1.6	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|564288328|ref|YP_008874519.1|	-	4.1e-18	65.6	0.1	4.5e-17	62.2	0.1	2.5	2	1	0	2	2	2	1	DEAD_2
DEAD	PF00270.29	gi|564288328|ref|YP_008874519.1|	-	3.3e-09	36.8	0.1	8.1e-07	29.0	0.0	3.1	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|564288328|ref|YP_008874519.1|	-	9.6e-06	25.7	0.0	0.00063	19.8	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DUF4456	PF14644.6	gi|564288328|ref|YP_008874519.1|	-	0.00043	20.0	0.4	0.14	11.9	0.1	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4456)
ATPase	PF06745.13	gi|564288328|ref|YP_008874519.1|	-	0.0029	17.0	0.0	0.0052	16.2	0.0	1.5	1	0	0	1	1	1	1	KaiC
Zot	PF05707.12	gi|564288328|ref|YP_008874519.1|	-	0.0079	15.9	0.1	2.1	8.0	0.0	2.3	2	0	0	2	2	2	2	Zonular	occludens	toxin	(Zot)
HBB	PF06777.11	gi|564288328|ref|YP_008874519.1|	-	0.025	14.3	0.0	0.055	13.1	0.0	1.6	1	0	0	1	1	1	0	Helical	and	beta-bridge	domain
AAA_34	PF13872.6	gi|564288328|ref|YP_008874519.1|	-	0.047	12.6	0.0	0.098	11.5	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	NTP	hydrolase	pore-1
AAA	PF00004.29	gi|564288328|ref|YP_008874519.1|	-	0.05	14.0	0.1	6.2	7.3	0.1	2.7	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TrwB_AAD_bind	PF10412.9	gi|564288328|ref|YP_008874519.1|	-	0.054	12.4	0.1	0.13	11.2	0.1	1.5	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF2075	PF09848.9	gi|564288328|ref|YP_008874519.1|	-	0.086	12.1	0.1	3.4	6.8	0.0	2.2	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
HCMV_UL139	PF12507.8	gi|564288328|ref|YP_008874519.1|	-	0.35	11.3	4.1	0.47	10.9	0.2	2.8	3	0	0	3	3	3	0	Human	Cytomegalovirus	UL139	protein
CENP-H	PF05837.12	gi|564288328|ref|YP_008874519.1|	-	0.76	10.2	4.6	0.31	11.4	0.9	2.1	2	0	0	2	2	2	0	Centromere	protein	H	(CENP-H)
Cation_efflux	PF01545.21	gi|564288330|ref|YP_008874521.1|	-	2.7e-32	112.1	2.0	4.1e-32	111.5	2.0	1.3	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|564288330|ref|YP_008874521.1|	-	2.3e-05	24.4	0.0	4e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
DsbD_2	PF13386.6	gi|564288330|ref|YP_008874521.1|	-	0.073	13.0	0.1	0.073	13.0	0.1	1.7	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein	transmembrane	region
Metallophos_2	PF12850.7	gi|564288331|ref|YP_008874522.1|	-	2.3e-25	89.7	2.0	2.8e-25	89.4	2.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564288331|ref|YP_008874522.1|	-	0.00091	19.8	6.9	0.092	13.2	0.7	2.4	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|564288331|ref|YP_008874522.1|	-	0.013	14.8	0.0	0.023	14.0	0.0	1.3	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
HTH_20	PF12840.7	gi|564288332|ref|YP_008874523.1|	-	3.3e-14	52.7	0.1	5.6e-14	51.9	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288332|ref|YP_008874523.1|	-	4.7e-05	23.2	0.0	7.6e-05	22.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564288332|ref|YP_008874523.1|	-	5.6e-05	22.6	0.0	9.7e-05	21.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564288332|ref|YP_008874523.1|	-	0.00026	20.8	0.0	0.00039	20.2	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564288332|ref|YP_008874523.1|	-	0.011	15.6	0.0	0.047	13.6	0.0	1.9	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.16	gi|564288332|ref|YP_008874523.1|	-	0.062	13.1	0.0	0.1	12.4	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Rrf2	PF02082.20	gi|564288332|ref|YP_008874523.1|	-	0.11	12.9	0.0	0.18	12.1	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
ATP-synt_J	PF04911.12	gi|564288332|ref|YP_008874523.1|	-	0.82	9.3	4.9	11	5.6	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	j	chain
FtsH_ext	PF06480.15	gi|564288333|ref|YP_008874524.1|	-	0.12	12.8	0.2	0.12	12.8	0.2	1.0	1	0	0	1	1	1	0	FtsH	Extracellular
Peptidase_M29	PF02073.15	gi|564288334|ref|YP_008874525.1|	-	5.4e-68	229.6	0.1	6.3e-68	229.4	0.1	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
YccF	PF03733.13	gi|564288335|ref|YP_008874526.1|	-	1.4e-09	38.5	27.2	1.6e-05	25.5	10.0	2.1	2	0	0	2	2	2	2	Inner	membrane	component	domain
E1-E2_ATPase	PF00122.20	gi|564288335|ref|YP_008874526.1|	-	1.4	8.4	4.8	13	5.3	0.7	2.0	2	0	0	2	2	2	0	E1-E2	ATPase
DUF21	PF01595.20	gi|564288336|ref|YP_008874527.1|	-	1.1e-41	142.5	4.8	1.3e-41	142.2	4.8	1.0	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
DZR	PF12773.7	gi|564288337|ref|YP_008874528.1|	-	0.0018	18.2	2.5	0.0027	17.7	2.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564288337|ref|YP_008874528.1|	-	0.0077	15.9	1.7	0.011	15.4	1.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF2157	PF09925.9	gi|564288338|ref|YP_008874529.1|	-	0.018	14.9	17.9	0.14	12.0	17.9	2.0	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2157)
DUF4131	PF13567.6	gi|564288338|ref|YP_008874529.1|	-	3.3	7.3	13.3	1	9.0	0.8	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
Radical_SAM	PF04055.21	gi|564288339|ref|YP_008874530.1|	-	1.9e-05	25.1	0.7	0.00081	19.8	0.6	2.3	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|564288339|ref|YP_008874530.1|	-	0.0027	17.8	0.0	0.005	17.0	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|564288339|ref|YP_008874530.1|	-	0.029	14.6	0.1	0.073	13.3	0.1	1.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
PASTA	PF03793.19	gi|564288339|ref|YP_008874530.1|	-	0.15	12.0	0.0	0.66	9.9	0.0	2.1	2	0	0	2	2	2	0	PASTA	domain
TetR_C_1	PF02909.17	gi|564288339|ref|YP_008874530.1|	-	0.16	11.8	0.3	2.4	8.0	0.1	2.4	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
MFS_1	PF07690.16	gi|564288340|ref|YP_008874531.1|	-	2.7e-43	148.3	81.4	6.9e-43	146.9	59.5	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564288340|ref|YP_008874531.1|	-	5e-06	25.6	6.2	5e-06	25.6	6.2	2.7	3	0	0	3	3	3	1	MFS_1	like	family
OrfB_Zn_ribbon	PF07282.11	gi|564288341|ref|YP_008874532.1|	-	2.8e-20	72.0	2.5	3.8e-20	71.6	2.5	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DpnI	PF06044.12	gi|564288341|ref|YP_008874532.1|	-	0.022	14.4	0.7	0.031	13.9	0.2	1.4	1	1	0	1	1	1	0	Dam-replacing	family
zinc_ribbon_2	PF13240.6	gi|564288341|ref|YP_008874532.1|	-	0.026	14.2	3.3	1.1	9.1	0.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Ephrin_rec_like	PF07699.13	gi|564288341|ref|YP_008874532.1|	-	0.028	14.2	3.4	0.084	12.7	3.4	1.8	1	1	0	1	1	1	0	Putative	ephrin-receptor	like
Rubredoxin_2	PF18073.1	gi|564288341|ref|YP_008874532.1|	-	0.16	11.7	5.1	1.9	8.3	1.0	2.4	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-Mss51	PF13824.6	gi|564288341|ref|YP_008874532.1|	-	0.5	10.5	4.9	1.3	9.2	1.0	2.4	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
HypA	PF01155.19	gi|564288341|ref|YP_008874532.1|	-	0.56	10.2	3.4	0.91	9.6	3.2	1.5	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|564288341|ref|YP_008874532.1|	-	1.3	9.2	4.9	3.6	7.8	4.9	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|564288341|ref|YP_008874532.1|	-	2.6	8.0	6.0	6.3	6.8	0.2	3.0	3	0	0	3	3	3	0	Nudix	N-terminal
zf-CCHC_3	PF13917.6	gi|564288341|ref|YP_008874532.1|	-	3.5	7.7	8.4	0.49	10.4	1.9	2.6	1	1	0	2	2	2	0	Zinc	knuckle
PsiE	PF06146.12	gi|564288342|ref|YP_008874533.1|	-	1.5e-14	54.1	7.2	1.5e-14	54.1	7.2	2.2	2	1	0	2	2	2	1	Phosphate-starvation-inducible	E
DUF2177	PF09945.9	gi|564288342|ref|YP_008874533.1|	-	0.14	12.3	6.0	0.69	10.0	3.2	2.2	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2177)
Rnf-Nqr	PF02508.14	gi|564288342|ref|YP_008874533.1|	-	0.46	10.4	7.1	0.6	10.1	7.1	1.1	1	0	0	1	1	1	0	Rnf-Nqr	subunit,	membrane	protein
DUF202	PF02656.15	gi|564288342|ref|YP_008874533.1|	-	7.1	7.2	10.2	1e+02	3.4	9.6	2.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
DUF373	PF04123.13	gi|564288343|ref|YP_008874534.1|	-	4.6e-117	391.2	8.9	5.3e-117	391.0	8.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
ATP-synt_I	PF03899.15	gi|564288343|ref|YP_008874534.1|	-	0.094	13.1	6.5	4.1	7.8	0.1	2.5	2	0	0	2	2	2	0	ATP	synthase	I	chain
DUF2721	PF11026.8	gi|564288343|ref|YP_008874534.1|	-	0.28	11.1	3.1	0.45	10.4	1.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
Myco_arth_vir_N	PF09610.10	gi|564288343|ref|YP_008874534.1|	-	8.2	6.6	10.7	0.32	11.1	4.1	2.2	2	0	0	2	2	2	0	Mycoplasma	virulence	signal	region	(Myco_arth_vir_N)
MctB	PF11382.8	gi|564288344|ref|YP_008874535.1|	-	0.0014	18.4	1.0	0.0018	18.1	1.0	1.2	1	0	0	1	1	1	1	Copper	transport	outer	membrane	protein,	MctB
HEAT_2	PF13646.6	gi|564288344|ref|YP_008874535.1|	-	0.023	15.1	0.7	0.033	14.6	0.7	1.3	1	0	0	1	1	1	0	HEAT	repeats
DUF2027	PF09640.10	gi|564288346|ref|YP_008874539.1|	-	0.02	14.5	0.1	0.18	11.4	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2027)
Ndc1_Nup	PF09531.10	gi|564288347|ref|YP_008874542.1|	-	0.26	9.9	0.1	0.39	9.4	0.1	1.2	1	0	0	1	1	1	0	Nucleoporin	protein	Ndc1-Nup
T2SSM	PF04612.12	gi|564291265|ref|YP_008874543.1|	-	0.00035	20.7	0.0	0.00045	20.3	0.0	1.2	1	0	0	1	1	1	1	Type	II	secretion	system	(T2SS),	protein	M
HSP33	PF01430.19	gi|564291267|ref|YP_008874546.1|	-	0.11	11.9	0.3	14	5.0	0.0	2.2	2	0	0	2	2	2	0	Hsp33	protein
HTH_20	PF12840.7	gi|564291268|ref|YP_008874547.1|	-	0.016	15.2	0.7	0.2	11.7	0.1	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF5615	PF18480.1	gi|564291268|ref|YP_008874547.1|	-	0.069	12.9	1.0	0.15	11.9	1.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF5615)
Mrr_N	PF14338.6	gi|564288349|ref|YP_008874548.1|	-	0.00031	20.8	0.0	0.00061	19.9	0.0	1.5	1	1	0	1	1	1	1	Mrr	N-terminal	domain
HTH_20	PF12840.7	gi|564288349|ref|YP_008874548.1|	-	0.00062	19.8	0.0	0.00081	19.4	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|564288349|ref|YP_008874548.1|	-	0.0032	17.4	0.0	0.0048	16.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_12	PF08461.10	gi|564288349|ref|YP_008874548.1|	-	0.008	16.1	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_Crp_2	PF13545.6	gi|564288349|ref|YP_008874548.1|	-	0.0089	16.0	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
PadR	PF03551.14	gi|564288349|ref|YP_008874548.1|	-	0.013	15.4	0.1	0.034	14.1	0.1	1.7	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|564288349|ref|YP_008874548.1|	-	0.046	14.2	0.1	0.061	13.8	0.1	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4423	PF14394.6	gi|564288349|ref|YP_008874548.1|	-	0.053	13.2	0.0	0.063	13.0	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Replic_Relax	PF13814.6	gi|564288349|ref|YP_008874548.1|	-	0.14	12.2	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
Phage_integrase	PF00589.22	gi|564288350|ref|YP_008874549.1|	-	5.5e-08	32.8	0.0	3.6e-07	30.1	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|564288350|ref|YP_008874549.1|	-	4.7e-07	30.0	0.0	1.3e-06	28.6	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|564288350|ref|YP_008874549.1|	-	0.015	15.6	0.0	0.058	13.7	0.0	1.9	2	0	0	2	2	2	0	Phage	integrase	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|564288350|ref|YP_008874549.1|	-	0.038	14.4	0.2	0.28	11.7	0.1	2.4	2	1	0	2	2	2	0	Phage	integrase,	N-terminal	SAM-like	domain
Bac_globin	PF01152.21	gi|564288351|ref|YP_008874550.1|	-	4.1e-23	81.8	0.0	4.5e-23	81.7	0.0	1.0	1	0	0	1	1	1	1	Bacterial-like	globin
Protoglobin	PF11563.8	gi|564288351|ref|YP_008874550.1|	-	9.6e-05	22.3	0.0	0.00035	20.5	0.0	1.7	1	1	1	2	2	2	1	Protoglobin
CMD	PF02627.20	gi|564288351|ref|YP_008874550.1|	-	0.016	15.2	0.3	0.027	14.5	0.3	1.4	1	0	0	1	1	1	0	Carboxymuconolactone	decarboxylase	family
TRAM	PF01938.20	gi|564288353|ref|YP_008874552.1|	-	4.2e-07	29.9	0.2	5.9e-07	29.4	0.2	1.2	1	0	0	1	1	1	1	TRAM	domain
DUF1318	PF07027.12	gi|564288353|ref|YP_008874552.1|	-	0.11	13.0	0.0	0.16	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1318)
DNA_pol_phi	PF04931.13	gi|564288353|ref|YP_008874552.1|	-	1.9	6.5	5.7	2	6.4	5.7	1.0	1	0	0	1	1	1	0	DNA	polymerase	phi
adh_short_C2	PF13561.6	gi|564288354|ref|YP_008874553.1|	-	3.3e-50	170.8	0.0	4.5e-50	170.4	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564288354|ref|YP_008874553.1|	-	1.7e-38	132.0	0.0	2.2e-38	131.7	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564288354|ref|YP_008874553.1|	-	1.7e-10	41.1	0.0	2.9e-10	40.4	0.0	1.3	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|564288354|ref|YP_008874553.1|	-	0.0013	18.6	0.3	0.0025	17.7	0.2	1.4	1	1	0	1	1	1	1	NAD(P)H-binding
NTP_transferase	PF00483.23	gi|564288355|ref|YP_008874554.1|	-	7.9e-38	130.4	0.0	1.3e-37	129.8	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564288355|ref|YP_008874554.1|	-	3e-06	27.7	0.2	6.3e-06	26.6	0.2	1.7	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
MannoseP_isomer	PF01050.18	gi|564288355|ref|YP_008874554.1|	-	0.0085	16.0	0.2	0.013	15.4	0.2	1.3	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
OEP	PF02321.18	gi|564288356|ref|YP_008874555.1|	-	0.075	12.8	0.3	0.098	12.5	0.3	1.1	1	0	0	1	1	1	0	Outer	membrane	efflux	protein
tRNA_anti-codon	PF01336.25	gi|564288357|ref|YP_008874556.1|	-	0.01	15.8	0.2	0.12	12.4	0.0	2.5	2	0	0	2	2	2	0	OB-fold	nucleic	acid	binding	domain
Glyoxalase	PF00903.25	gi|564288359|ref|YP_008874558.1|	-	4.3e-16	59.3	0.0	5e-16	59.1	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|564288359|ref|YP_008874558.1|	-	3.6e-11	43.3	0.0	5.3e-11	42.8	0.0	1.3	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.7	gi|564288359|ref|YP_008874558.1|	-	2.5e-06	27.4	0.0	0.032	14.2	0.0	2.1	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_6	PF18029.1	gi|564288359|ref|YP_008874558.1|	-	4.6e-05	24.2	0.8	0.0001	23.1	0.8	1.7	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|564288359|ref|YP_008874558.1|	-	8.8e-05	22.7	0.1	0.00011	22.4	0.1	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
RHH_1	PF01402.21	gi|564288360|ref|YP_008874560.1|	-	0.0011	18.8	0.2	0.0011	18.8	0.2	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
DUF3562	PF12085.8	gi|564288360|ref|YP_008874560.1|	-	0.0056	16.3	0.0	0.013	15.1	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3562)
CopG_antitoxin	PF12441.8	gi|564288360|ref|YP_008874560.1|	-	0.0086	16.6	0.0	0.021	15.4	0.0	1.6	1	0	0	1	1	1	1	CopG	antitoxin	of	type	II	toxin-antitoxin	system
YabA	PF06156.13	gi|564288360|ref|YP_008874560.1|	-	0.078	13.6	0.9	0.17	12.5	0.9	1.7	1	0	0	1	1	1	0	Initiation	control	protein	YabA
DUF4047	PF13256.6	gi|564288360|ref|YP_008874560.1|	-	0.1	12.8	0.7	0.42	10.8	0.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4047)
TetR_C_24	PF17932.1	gi|564288360|ref|YP_008874560.1|	-	0.18	12.1	3.1	0.29	11.4	1.5	1.9	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
Histone_HNS	PF00816.21	gi|564288360|ref|YP_008874560.1|	-	0.22	12.3	2.3	26	5.7	0.0	2.3	2	0	0	2	2	2	0	H-NS	histone	family
HNH	PF01844.23	gi|564288362|ref|YP_008874562.1|	-	2.1e-05	24.6	0.0	2.1e-05	24.6	0.0	4.7	6	0	0	6	6	6	1	HNH	endonuclease
C1_1	PF00130.22	gi|564288362|ref|YP_008874562.1|	-	0.038	13.9	0.4	0.038	13.9	0.4	4.1	4	0	0	4	4	4	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
HNH_2	PF13391.6	gi|564288362|ref|YP_008874562.1|	-	0.095	12.8	1.0	0.3	11.2	0.4	2.2	2	0	0	2	2	2	0	HNH	endonuclease
DUF4428	PF14471.6	gi|564288362|ref|YP_008874562.1|	-	0.15	12.0	4.3	0.29	11.1	0.1	3.1	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4428)
zf-MYND	PF01753.18	gi|564288362|ref|YP_008874562.1|	-	0.87	9.7	24.8	7.6	6.7	1.0	5.3	3	1	1	4	4	4	0	MYND	finger
YhfH	PF14149.6	gi|564288362|ref|YP_008874562.1|	-	4.8	7.3	14.9	0.62	10.1	3.0	3.5	3	0	0	3	3	3	0	YhfH-like	protein
Pribosyltran	PF00156.27	gi|564288364|ref|YP_008874564.1|	-	7.1e-26	90.6	0.3	1.1e-24	86.7	0.3	2.0	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.6	gi|564288364|ref|YP_008874564.1|	-	7e-05	22.4	0.0	0.0006	19.4	0.0	2.0	1	1	0	1	1	1	1	Phosphoribosyl	transferase
UPRTase	PF14681.6	gi|564288364|ref|YP_008874564.1|	-	0.00012	21.6	0.0	0.00023	20.7	0.0	1.4	2	0	0	2	2	2	1	Uracil	phosphoribosyltransferase
CBS	PF00571.28	gi|564288365|ref|YP_008874565.1|	-	1.2e-22	80.1	4.1	1.3e-12	47.9	0.5	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|564288365|ref|YP_008874565.1|	-	2.5e-14	53.2	9.1	8.1e-09	35.1	0.1	3.1	2	1	1	3	3	3	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|564288365|ref|YP_008874565.1|	-	0.0016	18.1	7.0	0.0016	18.1	7.0	1.9	1	1	0	1	1	1	1	Peptidase	M50B-like
DUF3267	PF11667.8	gi|564288365|ref|YP_008874565.1|	-	0.0051	17.1	1.6	0.0051	17.1	1.6	2.3	3	0	0	3	3	3	1	Putative	zincin	peptidase
Cupin_2	PF07883.11	gi|564288366|ref|YP_008874566.1|	-	2.5e-19	68.7	0.3	3.3e-19	68.4	0.3	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.22	gi|564288366|ref|YP_008874566.1|	-	1.6e-08	34.3	0.0	2.5e-08	33.6	0.0	1.2	1	0	0	1	1	1	1	Cupin
AraC_binding	PF02311.19	gi|564288366|ref|YP_008874566.1|	-	6.8e-05	22.8	0.2	8.9e-05	22.4	0.2	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.18	gi|564288366|ref|YP_008874566.1|	-	0.00021	21.2	0.0	0.00027	20.9	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_3	PF05899.12	gi|564288366|ref|YP_008874566.1|	-	0.00023	20.8	0.1	0.00032	20.3	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
CENP-C_C	PF11699.8	gi|564288366|ref|YP_008874566.1|	-	0.0026	17.9	0.0	0.0036	17.5	0.0	1.2	1	0	0	1	1	1	1	Mif2/CENP-C	like
DEAD	PF00270.29	gi|564288367|ref|YP_008874567.1|	-	1.9e-21	76.6	0.0	6.7e-21	74.8	0.0	1.8	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|564288367|ref|YP_008874567.1|	-	3.5e-14	53.1	0.0	8e-14	51.9	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|564288367|ref|YP_008874567.1|	-	1.3e-09	38.3	0.0	2.4e-09	37.4	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
PhnA_Zn_Ribbon	PF08274.12	gi|564288367|ref|YP_008874567.1|	-	0.013	15.5	0.8	0.026	14.5	0.8	1.5	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
TackOD1	PF18551.1	gi|564288369|ref|YP_008874569.1|	-	0.002	17.8	0.3	0.002	17.8	0.3	1.0	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
DZR	PF12773.7	gi|564288369|ref|YP_008874569.1|	-	0.0024	17.8	0.6	0.0028	17.6	0.6	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|564288369|ref|YP_008874569.1|	-	0.0059	17.3	0.4	0.0063	17.2	0.4	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
HypA	PF01155.19	gi|564288369|ref|YP_008874569.1|	-	0.012	15.7	1.8	0.019	15.0	1.8	1.4	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|564288369|ref|YP_008874569.1|	-	0.015	14.8	1.9	0.21	11.1	0.3	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
DUF35_N	PF12172.8	gi|564288369|ref|YP_008874569.1|	-	0.017	15.0	1.0	0.024	14.5	1.0	1.2	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DNA_ligase_ZBD	PF03119.16	gi|564288369|ref|YP_008874569.1|	-	0.025	14.6	4.2	0.86	9.7	1.2	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
UPF0547	PF10571.9	gi|564288369|ref|YP_008874569.1|	-	0.043	13.9	0.6	0.072	13.2	0.6	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
ProRS-C_1	PF09180.11	gi|564288369|ref|YP_008874569.1|	-	0.048	13.9	0.2	0.058	13.6	0.2	1.1	1	0	0	1	1	1	0	Prolyl-tRNA	synthetase,	C-terminal
RecR	PF02132.15	gi|564288369|ref|YP_008874569.1|	-	0.051	13.1	4.5	0.17	11.5	4.5	1.8	1	1	0	1	1	1	0	RecR	protein
Nop10p	PF04135.12	gi|564288369|ref|YP_008874569.1|	-	0.078	13.0	0.3	0.1	12.7	0.3	1.2	1	0	0	1	1	1	0	Nucleolar	RNA-binding	protein,	Nop10p	family
zf-C2H2_11	PF16622.5	gi|564288369|ref|YP_008874569.1|	-	0.1	12.4	0.9	0.49	10.2	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	C2H2-type
zf-ACC	PF17848.1	gi|564288369|ref|YP_008874569.1|	-	0.17	12.0	3.5	4.9	7.3	0.0	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
zf-ISL3	PF14690.6	gi|564288369|ref|YP_008874569.1|	-	0.18	12.5	2.0	3.3	8.4	0.3	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
NRDD	PF13597.6	gi|564288369|ref|YP_008874569.1|	-	0.2	10.4	0.6	0.2	10.4	0.6	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
Zn-ribbon_8	PF09723.10	gi|564288369|ref|YP_008874569.1|	-	0.49	10.6	6.3	15	5.8	6.3	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
CitMHS	PF03600.16	gi|564288370|ref|YP_008874570.1|	-	1.4e-61	208.3	3.0	1.4e-61	208.3	3.0	1.8	1	1	1	2	2	2	2	Citrate	transporter
Na_sulph_symp	PF00939.19	gi|564288370|ref|YP_008874570.1|	-	8.8e-23	81.1	37.2	2.2e-13	50.1	14.4	3.1	2	1	1	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
TrkA_C	PF02080.21	gi|564288370|ref|YP_008874570.1|	-	1.9e-21	75.6	3.1	4.4e-12	45.7	0.1	2.4	2	0	0	2	2	2	2	TrkA-C	domain
MCPsignal	PF00015.21	gi|564288371|ref|YP_008874571.1|	-	2.9e-38	131.4	26.4	2.9e-38	131.4	26.4	4.7	1	1	3	5	5	5	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|564288371|ref|YP_008874571.1|	-	3.6e-17	62.5	18.1	1.4e-12	47.7	0.2	5.8	5	0	0	5	5	5	2	HAMP	domain
PSDC	PF12588.8	gi|564288371|ref|YP_008874571.1|	-	0.008	16.2	0.8	0.066	13.2	0.1	2.4	2	0	0	2	2	2	1	Phophatidylserine	decarboxylase
DUF1664	PF07889.12	gi|564288371|ref|YP_008874571.1|	-	0.026	14.6	33.8	0.071	13.1	2.8	5.7	1	1	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Mod_r	PF07200.13	gi|564288371|ref|YP_008874571.1|	-	0.05	13.7	28.1	0.16	12.1	6.6	4.5	2	1	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
Mce4_CUP1	PF11887.8	gi|564288371|ref|YP_008874571.1|	-	0.33	10.4	17.1	0.083	12.3	0.3	3.5	1	1	1	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
AIP3	PF03915.13	gi|564288371|ref|YP_008874571.1|	-	0.71	8.9	33.2	0.082	12.0	10.9	3.0	2	1	2	4	4	4	0	Actin	interacting	protein	3
Fib_alpha	PF08702.10	gi|564288371|ref|YP_008874571.1|	-	0.75	10.0	24.9	1	9.6	1.5	4.8	2	1	4	6	6	6	0	Fibrinogen	alpha/beta	chain	family
BLOC1_2	PF10046.9	gi|564288371|ref|YP_008874571.1|	-	0.85	10.0	29.5	0.97	9.8	1.0	6.0	3	2	0	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_13	PF13166.6	gi|564288371|ref|YP_008874571.1|	-	0.92	8.1	40.9	0.59	8.7	16.6	2.5	1	1	1	2	2	2	0	AAA	domain
DUF489	PF04356.12	gi|564288371|ref|YP_008874571.1|	-	0.96	9.4	4.9	1.4	8.9	1.7	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
DUF948	PF06103.11	gi|564288371|ref|YP_008874571.1|	-	2.7	8.3	47.7	0.041	14.1	5.9	7.3	2	1	4	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF2203	PF09969.9	gi|564288371|ref|YP_008874571.1|	-	3	8.6	39.0	0.11	13.2	1.7	5.5	1	1	4	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
Fzo_mitofusin	PF04799.13	gi|564288371|ref|YP_008874571.1|	-	4.6	6.8	16.4	1	8.9	0.6	4.5	3	1	1	4	4	4	0	fzo-like	conserved	region
YabA	PF06156.13	gi|564288371|ref|YP_008874571.1|	-	7.4	7.3	13.5	3.4	8.4	1.2	4.7	3	1	1	4	4	4	0	Initiation	control	protein	YabA
Spc7	PF08317.11	gi|564288371|ref|YP_008874571.1|	-	7.9	5.3	44.4	2.4	6.9	7.6	4.2	1	1	3	4	4	4	0	Spc7	kinetochore	protein
Bmp	PF02608.14	gi|564288372|ref|YP_008874572.1|	-	2.2e-59	200.9	0.1	2.9e-59	200.5	0.1	1.1	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Peripla_BP_4	PF13407.6	gi|564288372|ref|YP_008874572.1|	-	6.6e-05	22.6	1.9	9.4e-05	22.1	1.9	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
MCM	PF00493.23	gi|564288373|ref|YP_008874573.1|	-	2.5e-86	288.4	0.0	1.1e-65	220.8	0.0	2.2	2	0	0	2	2	2	2	MCM	P-loop	domain
MCM_OB	PF17207.3	gi|564288373|ref|YP_008874573.1|	-	9e-37	125.7	0.1	1.9e-36	124.7	0.1	1.5	1	0	0	1	1	1	1	MCM	OB	domain
LAGLIDADG_3	PF14528.6	gi|564288373|ref|YP_008874573.1|	-	1.6e-28	98.8	0.0	3.7e-15	56.0	0.0	2.8	2	0	0	2	2	2	2	LAGLIDADG-like	domain
MCM_lid	PF17855.1	gi|564288373|ref|YP_008874573.1|	-	7.7e-28	96.8	1.0	2.8e-27	95.0	0.2	2.4	2	0	0	2	2	2	1	MCM	AAA-lid	domain
Intein_splicing	PF14890.6	gi|564288373|ref|YP_008874573.1|	-	3.7e-25	88.4	0.0	1.7e-24	86.3	0.0	2.2	2	0	0	2	2	2	1	Intein	splicing	domain
HTH_31	PF13560.6	gi|564288373|ref|YP_008874573.1|	-	4.4e-10	39.7	0.4	4.4e-10	39.7	0.4	2.4	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|564288373|ref|YP_008874573.1|	-	5.1e-09	36.0	0.0	1.3e-08	34.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
MCM_N	PF14551.6	gi|564288373|ref|YP_008874573.1|	-	3.2e-08	34.1	0.6	1.7e-07	31.7	0.8	2.1	2	0	0	2	2	1	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.21	gi|564288373|ref|YP_008874573.1|	-	7.4e-08	32.0	0.0	1.5e-05	24.4	0.0	2.5	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
HTH_19	PF12844.7	gi|564288373|ref|YP_008874573.1|	-	0.00035	20.5	0.6	0.1	12.7	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
AAA_5	PF07728.14	gi|564288373|ref|YP_008874573.1|	-	0.0027	17.7	0.0	0.38	10.8	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|564288373|ref|YP_008874573.1|	-	0.0066	16.2	0.0	0.2	11.4	0.0	2.3	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Hint	PF01079.20	gi|564288373|ref|YP_008874573.1|	-	0.013	15.0	0.1	0.2	11.1	0.0	2.1	2	0	0	2	2	2	0	Hint	module
RQC	PF09382.10	gi|564288373|ref|YP_008874573.1|	-	0.026	14.3	0.0	0.061	13.1	0.0	1.5	1	0	0	1	1	1	0	RQC	domain
RcpC	PF16976.5	gi|564288373|ref|YP_008874573.1|	-	0.15	12.1	0.3	1.8	8.7	0.1	2.5	2	0	0	2	2	2	0	Flp	pilus	assembly	protein	RcpC/CpaB
FUSC	PF04632.12	gi|564288376|ref|YP_008874576.1|	-	7.8	4.9	15.9	1.9	6.9	7.3	2.0	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
BON	PF04972.17	gi|564288377|ref|YP_008874577.1|	-	0.4	11.0	0.1	0.4	11.0	0.1	2.3	3	0	0	3	3	3	0	BON	domain
ParA	PF10609.9	gi|564288378|ref|YP_008874578.1|	-	2.2e-13	50.3	0.1	2.4e-06	27.2	0.0	2.6	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|564288378|ref|YP_008874578.1|	-	7.6e-12	45.2	0.6	1.1e-05	25.0	0.0	3.0	3	0	0	3	3	3	3	Cellulose	biosynthesis	protein	BcsQ
AAA_31	PF13614.6	gi|564288378|ref|YP_008874578.1|	-	5.4e-08	33.0	0.0	2.5e-07	30.8	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564288378|ref|YP_008874578.1|	-	1.5e-07	31.6	0.0	2.2e-06	27.7	0.0	2.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|564288378|ref|YP_008874578.1|	-	0.00018	20.9	0.2	0.16	11.3	0.0	2.1	2	0	0	2	2	2	2	ATPase	MipZ
AAA_25	PF13481.6	gi|564288378|ref|YP_008874578.1|	-	0.00045	19.8	1.0	0.001	18.6	0.4	1.8	1	1	1	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.15	gi|564288378|ref|YP_008874578.1|	-	0.00074	18.8	0.0	0.0024	17.1	0.1	1.7	2	0	0	2	2	2	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.18	gi|564288378|ref|YP_008874578.1|	-	0.0025	17.3	0.0	0.35	10.3	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
RNA_helicase	PF00910.22	gi|564288378|ref|YP_008874578.1|	-	0.13	12.7	0.0	0.19	12.2	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
AAA_18	PF13238.6	gi|564288378|ref|YP_008874578.1|	-	0.13	12.8	0.0	0.24	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|564288378|ref|YP_008874578.1|	-	0.26	11.0	0.0	0.47	10.1	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
TFIIB	PF00382.19	gi|564288379|ref|YP_008874579.1|	-	2.8e-33	113.8	1.3	3e-17	62.4	0.0	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564288379|ref|YP_008874579.1|	-	4.7e-10	38.8	2.9	1e-09	37.8	2.9	1.6	1	1	0	1	1	1	1	TFIIB	zinc-binding
RB_B	PF01857.20	gi|564288379|ref|YP_008874579.1|	-	0.012	15.6	0.0	0.02	14.9	0.0	1.3	1	0	0	1	1	1	0	Retinoblastoma-associated	protein	B	domain
FMN_red	PF03358.15	gi|564288382|ref|YP_008874582.1|	-	1e-26	93.6	0.0	1.2e-26	93.3	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|564288382|ref|YP_008874582.1|	-	2.3e-06	27.4	0.0	3.8e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Flavodoxin-like	fold
DUF1947	PF09183.10	gi|564288383|ref|YP_008874583.1|	-	2	8.8	4.2	0.97	9.8	1.2	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1947)
Rieske	PF00355.26	gi|564288384|ref|YP_008874584.1|	-	2.6e-07	30.5	0.1	4.2e-07	29.8	0.1	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
MatE	PF01554.18	gi|564288385|ref|YP_008874585.1|	-	4.3e-57	192.3	31.8	8.4e-35	119.8	14.9	2.8	4	0	0	4	4	4	2	MatE
Polysacc_synt_C	PF14667.6	gi|564288385|ref|YP_008874585.1|	-	5.7e-06	26.5	15.8	5.7e-06	26.5	15.8	4.0	3	2	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
YniB	PF14002.6	gi|564288385|ref|YP_008874585.1|	-	0.11	12.2	0.1	0.11	12.2	0.1	1.8	2	0	0	2	2	2	0	YniB-like	protein
Tom5	PF10642.9	gi|564288385|ref|YP_008874585.1|	-	1.5	8.9	4.3	0.59	10.2	0.3	2.4	2	0	0	2	2	2	0	Mitochondrial	import	receptor	subunit	or	translocase
TetR_C_6	PF13977.6	gi|564288386|ref|YP_008874586.1|	-	2.1e-15	56.9	0.1	5e-15	55.7	0.0	1.6	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564288386|ref|YP_008874586.1|	-	1.8e-10	40.4	0.0	3e-10	39.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_25	PF17933.1	gi|564288386|ref|YP_008874586.1|	-	0.0002	21.7	0.1	0.0009	19.5	0.0	2.0	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|564288386|ref|YP_008874586.1|	-	0.00059	20.1	0.0	0.0018	18.5	0.0	1.8	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564288386|ref|YP_008874586.1|	-	0.00084	19.4	0.0	0.0012	18.9	0.0	1.4	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|564288386|ref|YP_008874586.1|	-	0.0027	18.0	0.3	0.0052	17.1	0.3	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|564288386|ref|YP_008874586.1|	-	0.0044	17.1	0.0	0.013	15.6	0.0	1.7	1	1	1	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|564288386|ref|YP_008874586.1|	-	0.0066	16.6	0.4	0.015	15.5	0.3	1.6	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_4	PF08359.11	gi|564288386|ref|YP_008874586.1|	-	0.017	15.3	0.0	0.029	14.5	0.0	1.5	1	0	0	1	1	1	0	YsiA-like	protein,	C-terminal	region
TetR_C_27	PF17935.1	gi|564288386|ref|YP_008874586.1|	-	0.062	13.4	0.0	0.14	12.2	0.0	1.6	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
UPF0122	PF04297.14	gi|564288386|ref|YP_008874586.1|	-	0.11	12.7	0.1	0.21	11.8	0.1	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
AsnC_trans_reg	PF01037.21	gi|564288387|ref|YP_008874587.1|	-	8.5e-13	48.1	0.1	1.3e-12	47.4	0.1	1.3	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|564288387|ref|YP_008874587.1|	-	1.5e-09	37.3	0.1	2.9e-09	36.3	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564288387|ref|YP_008874587.1|	-	9.1e-07	28.6	0.0	1.5e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_AsnC-type	PF13404.6	gi|564288387|ref|YP_008874587.1|	-	9.7e-07	28.5	0.2	1.5e-06	27.9	0.2	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564288387|ref|YP_008874587.1|	-	9.8e-05	22.2	0.0	0.00019	21.3	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564288387|ref|YP_008874587.1|	-	0.00047	20.2	0.0	0.0012	18.9	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564288387|ref|YP_008874587.1|	-	0.0076	16.2	0.0	0.012	15.6	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288387|ref|YP_008874587.1|	-	0.0087	15.8	0.1	0.019	14.7	0.0	1.6	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR	PF01047.22	gi|564288387|ref|YP_008874587.1|	-	0.013	15.4	0.0	0.04	13.9	0.0	1.7	2	0	0	2	2	2	0	MarR	family
GntR	PF00392.21	gi|564288387|ref|YP_008874587.1|	-	0.015	15.0	0.0	0.033	13.8	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_10	PF04967.12	gi|564288387|ref|YP_008874587.1|	-	0.017	14.9	0.1	0.055	13.3	0.0	1.8	2	0	0	2	2	2	0	HTH	DNA	binding	domain
TrmB	PF01978.19	gi|564288387|ref|YP_008874587.1|	-	0.022	14.6	0.0	0.041	13.8	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|564288387|ref|YP_008874587.1|	-	0.047	13.8	0.0	0.088	13.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Pneumo_matrix	PF03393.16	gi|564288387|ref|YP_008874587.1|	-	0.06	12.6	0.0	0.077	12.2	0.0	1.1	1	0	0	1	1	1	0	Pneumovirus	matrix	protein
HTH_50	PF18024.1	gi|564288387|ref|YP_008874587.1|	-	0.12	12.0	0.0	0.25	11.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Cdc6_C	PF09079.11	gi|564288387|ref|YP_008874587.1|	-	0.12	12.4	0.0	0.24	11.4	0.0	1.5	1	0	0	1	1	1	0	CDC6,	C	terminal	winged	helix	domain
Gln-synt_C	PF00120.24	gi|564288388|ref|YP_008874588.1|	-	7.6e-141	469.1	0.0	9.5e-141	468.8	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.19	gi|564288388|ref|YP_008874588.1|	-	8.4e-30	102.3	0.1	1.9e-29	101.2	0.1	1.7	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
Gln-synt_N_2	PF16952.5	gi|564288388|ref|YP_008874588.1|	-	0.079	12.8	0.0	0.34	10.8	0.0	2.0	1	1	0	1	1	1	0	Glutamine	synthetase	N-terminal	domain
PAP2	PF01569.21	gi|564288389|ref|YP_008874589.1|	-	6.3e-16	58.4	5.2	6.3e-16	58.4	5.2	2.5	1	1	1	2	2	2	1	PAP2	superfamily
PAP2_3	PF14378.6	gi|564288389|ref|YP_008874589.1|	-	5.5e-12	45.8	11.1	1.4e-11	44.4	11.1	1.7	1	0	0	1	1	1	1	PAP2	superfamily
Virul_fac_BrkB	PF03631.15	gi|564288390|ref|YP_008874590.1|	-	1.5e-42	146.0	21.5	1.5e-42	146.0	21.5	2.1	2	0	0	2	2	2	1	Virulence	factor	BrkB
HNF-1_N	PF04814.13	gi|564288390|ref|YP_008874590.1|	-	0.27	11.8	0.1	0.41	11.2	0.1	1.1	1	0	0	1	1	1	0	Hepatocyte	nuclear	factor	1	(HNF-1),	N	terminus
DUF2207	PF09972.9	gi|564288390|ref|YP_008874590.1|	-	5.1	5.7	12.5	3.2e+02	-0.2	12.7	2.9	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
MatE	PF01554.18	gi|564288391|ref|YP_008874591.1|	-	3.1e-50	170.0	21.7	6.1e-26	91.0	7.8	2.7	2	1	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|564288391|ref|YP_008874591.1|	-	9.4e-11	42.0	8.4	9.4e-11	42.0	8.4	4.8	4	2	1	5	5	5	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|564288391|ref|YP_008874591.1|	-	1.2e-06	27.5	7.9	2.6e-06	26.3	5.4	2.4	2	1	0	2	2	2	1	Lipid	II	flippase	MurJ
TRM	PF02005.16	gi|564288392|ref|YP_008874593.1|	-	1.8e-92	310.4	0.0	2.1e-92	310.2	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
MTS	PF05175.14	gi|564288392|ref|YP_008874593.1|	-	0.00037	20.1	0.0	0.00075	19.1	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
UvrB_inter	PF17757.1	gi|564288392|ref|YP_008874593.1|	-	0.064	13.4	0.1	0.17	12.1	0.0	1.7	2	0	0	2	2	2	0	UvrB	interaction	domain
Methyltransf_25	PF13649.6	gi|564288392|ref|YP_008874593.1|	-	0.068	13.9	0.1	0.16	12.7	0.1	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|564288392|ref|YP_008874593.1|	-	0.13	11.6	0.2	0.2	11.0	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
HisKA_7TM	PF16927.5	gi|564288393|ref|YP_008874594.1|	-	1.9e-28	100.0	17.1	2.6e-28	99.6	17.1	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|564288393|ref|YP_008874594.1|	-	4.2e-14	53.0	0.1	2e-13	50.8	0.0	2.1	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|564288393|ref|YP_008874594.1|	-	3.3e-11	43.2	0.1	8.8e-10	38.6	0.1	2.4	1	1	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|564288393|ref|YP_008874594.1|	-	4.2e-09	36.6	1.3	1.3e-07	31.8	0.2	2.9	2	1	0	2	2	2	1	PAS	fold
PAS_8	PF13188.7	gi|564288393|ref|YP_008874594.1|	-	1.3e-07	31.5	0.5	2.3e-06	27.5	0.0	2.7	2	0	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564288393|ref|YP_008874594.1|	-	1.6e-06	28.1	0.4	3.5e-06	27.0	0.2	1.8	1	1	1	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_9	PF13426.7	gi|564288393|ref|YP_008874594.1|	-	9.1e-05	22.7	0.0	0.0021	18.3	0.0	2.6	2	1	0	2	2	2	1	PAS	domain
HATPase_c_5	PF14501.6	gi|564288393|ref|YP_008874594.1|	-	0.0055	16.6	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
HisKA_4TM	PF16926.5	gi|564288393|ref|YP_008874594.1|	-	0.083	12.5	0.1	0.083	12.5	0.1	3.0	3	1	1	4	4	4	0	Archaeal	4TM	region	of	histidine	kinase
SWIM	PF04434.17	gi|564288394|ref|YP_008874595.1|	-	0.038	13.7	2.2	0.17	11.6	2.2	1.9	1	1	0	1	1	1	0	SWIM	zinc	finger
ADC	PF06314.11	gi|564288395|ref|YP_008874596.1|	-	4.3e-19	69.0	0.1	6.5e-19	68.4	0.1	1.2	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
adh_short	PF00106.25	gi|564288396|ref|YP_008874597.1|	-	7e-47	159.4	0.0	9e-47	159.1	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564288396|ref|YP_008874597.1|	-	8e-41	140.1	0.2	1.1e-40	139.7	0.2	1.3	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564288396|ref|YP_008874597.1|	-	1.8e-12	47.5	0.1	1.1e-11	45.0	0.1	1.9	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564288396|ref|YP_008874597.1|	-	2.4e-05	23.9	0.1	4.6e-05	23.0	0.1	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|564288396|ref|YP_008874597.1|	-	0.00029	20.0	0.1	0.0004	19.6	0.1	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DUF1737	PF08410.10	gi|564288396|ref|YP_008874597.1|	-	0.0042	16.9	0.0	0.014	15.2	0.0	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1737)
DUF2827	PF10933.8	gi|564288396|ref|YP_008874597.1|	-	0.089	11.5	0.0	0.12	11.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2827)
DNA_pol_lambd_f	PF10391.9	gi|564288396|ref|YP_008874597.1|	-	0.17	11.7	0.1	0.42	10.5	0.1	1.6	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
GATase	PF00117.28	gi|564288397|ref|YP_008874598.1|	-	2.5e-22	79.6	0.0	3.1e-22	79.3	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|564288397|ref|YP_008874598.1|	-	9e-09	35.2	0.0	1.7e-08	34.3	0.0	1.4	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
SNO	PF01174.19	gi|564288397|ref|YP_008874598.1|	-	6.9e-08	32.6	0.0	7.4e-07	29.2	0.0	2.0	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
DJ-1_PfpI	PF01965.24	gi|564288397|ref|YP_008874598.1|	-	8.8e-05	22.4	0.0	0.00014	21.7	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_C26	PF07722.13	gi|564288397|ref|YP_008874598.1|	-	0.00013	21.8	0.6	0.0018	18.1	0.6	2.3	1	1	0	1	1	1	1	Peptidase	C26
CLP_protease	PF00574.23	gi|564288398|ref|YP_008874599.1|	-	0.061	13.2	0.1	0.077	12.9	0.1	1.1	1	0	0	1	1	1	0	Clp	protease
UDG	PF03167.19	gi|564288399|ref|YP_008874600.1|	-	6.1e-39	133.5	0.0	7.5e-39	133.2	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
Ribonuc_L-PSP	PF01042.21	gi|564288400|ref|YP_008874601.1|	-	2.6e-19	69.4	0.1	3.5e-19	69.0	0.1	1.2	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Histone_HNS	PF00816.21	gi|564288400|ref|YP_008874601.1|	-	0.032	15.0	0.0	0.051	14.4	0.0	1.4	1	0	0	1	1	1	0	H-NS	histone	family
DUF99	PF01949.16	gi|564288401|ref|YP_008874602.1|	-	2e-58	196.9	0.3	2.2e-58	196.7	0.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
GvpG	PF05120.12	gi|564288402|ref|YP_008874603.1|	-	0.27	11.3	4.9	0.56	10.3	4.8	1.7	1	1	0	1	1	1	0	Gas	vesicle	protein	G
Lactamase_B	PF00753.27	gi|564288403|ref|YP_008874604.1|	-	1.3e-10	41.7	9.1	1.4e-08	35.0	9.1	2.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|564288403|ref|YP_008874604.1|	-	6.4e-06	25.8	4.2	3.6e-05	23.4	4.2	2.0	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF687	PF05095.12	gi|564288403|ref|YP_008874604.1|	-	0.12	10.9	0.0	0.17	10.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF687)
Lactamase_B_3	PF13483.6	gi|564288403|ref|YP_008874604.1|	-	0.18	11.7	1.5	0.35	10.7	1.5	1.7	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
HisKA_4TM	PF16926.5	gi|564288404|ref|YP_008874605.1|	-	1.4e-08	34.5	8.8	3.2e-08	33.3	8.8	1.6	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
IclR	PF01614.18	gi|564288404|ref|YP_008874605.1|	-	0.04	13.8	0.0	0.078	12.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
Ribosomal_L40e	PF01020.17	gi|564288405|ref|YP_008874606.1|	-	5.6e-08	32.5	4.2	6.5e-08	32.3	4.2	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
zinc_ribbon_2	PF13240.6	gi|564288405|ref|YP_008874606.1|	-	0.00017	21.2	3.0	0.00023	20.8	3.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564288405|ref|YP_008874606.1|	-	0.0005	20.0	1.5	0.0005	20.0	1.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
DHHC	PF01529.20	gi|564288405|ref|YP_008874606.1|	-	0.046	13.8	1.3	0.055	13.6	1.3	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
DNA_RNApol_7kD	PF03604.13	gi|564288405|ref|YP_008874606.1|	-	0.17	11.6	6.1	0.32	10.7	6.1	1.4	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|564288405|ref|YP_008874606.1|	-	0.26	10.7	3.6	0.33	10.4	3.6	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
Ribo_biogen_C	PF04034.13	gi|564288407|ref|YP_008874608.1|	-	5.8e-45	152.1	0.0	7.2e-45	151.8	0.0	1.1	1	0	0	1	1	1	1	Ribosome	biogenesis	protein,	C-terminal
RLI	PF04068.15	gi|564288407|ref|YP_008874608.1|	-	3.9e-07	29.8	0.0	5.4e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
DTW	PF03942.15	gi|564288407|ref|YP_008874608.1|	-	0.16	11.7	0.0	1	9.0	0.0	1.9	1	1	0	1	1	1	0	DTW	domain
AhpC-TSA	PF00578.21	gi|564288408|ref|YP_008874609.1|	-	3.8e-27	94.7	0.0	7.5e-27	93.7	0.0	1.4	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564288408|ref|YP_008874609.1|	-	3.1e-18	65.9	0.0	5.1e-18	65.2	0.0	1.4	1	0	0	1	1	1	1	Redoxin
DUF1771	PF08590.10	gi|564288408|ref|YP_008874609.1|	-	0.035	14.5	1.5	0.035	14.5	1.5	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1771)
HemY_N	PF07219.13	gi|564288408|ref|YP_008874609.1|	-	2.5	8.3	4.1	1.1	9.5	0.3	2.1	2	0	0	2	2	2	0	HemY	protein	N-terminus
SnoaL_2	PF12680.7	gi|564288409|ref|YP_008874610.1|	-	1.8e-11	44.6	1.0	2.6e-11	44.1	1.0	1.2	1	0	0	1	1	1	1	SnoaL-like	domain
SnoaL_4	PF13577.6	gi|564288409|ref|YP_008874610.1|	-	3.3e-08	33.7	0.1	3.8e-08	33.5	0.1	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF4440	PF14534.6	gi|564288409|ref|YP_008874610.1|	-	4.3e-05	23.9	0.2	5.1e-05	23.6	0.2	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4440)
SnoaL	PF07366.12	gi|564288409|ref|YP_008874610.1|	-	0.0011	18.8	0.1	0.0012	18.6	0.1	1.2	1	0	0	1	1	1	1	SnoaL-like	polyketide	cyclase
NTF2	PF02136.20	gi|564288409|ref|YP_008874610.1|	-	0.0062	17.1	0.0	0.0069	16.9	0.0	1.1	1	0	0	1	1	1	1	Nuclear	transport	factor	2	(NTF2)	domain
SnoaL_3	PF13474.6	gi|564288409|ref|YP_008874610.1|	-	0.0076	16.5	0.0	0.011	16.0	0.0	1.2	1	0	0	1	1	1	1	SnoaL-like	domain
Methyltransf_25	PF13649.6	gi|564288410|ref|YP_008874611.1|	-	2.6e-12	47.3	0.1	4.4e-12	46.5	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288410|ref|YP_008874611.1|	-	4e-12	46.6	0.1	6.2e-12	46.0	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288410|ref|YP_008874611.1|	-	6.7e-10	39.0	0.0	8.7e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288410|ref|YP_008874611.1|	-	2.2e-06	27.5	0.0	6e-06	26.1	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288410|ref|YP_008874611.1|	-	3.6e-05	24.4	0.0	0.0001	23.0	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
TPMT	PF05724.11	gi|564288410|ref|YP_008874611.1|	-	0.00052	19.7	0.0	0.00084	19.0	0.0	1.3	1	0	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
TehB	PF03848.14	gi|564288410|ref|YP_008874611.1|	-	0.0012	18.2	0.0	0.0019	17.6	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
MTS	PF05175.14	gi|564288410|ref|YP_008874611.1|	-	0.0038	16.8	0.0	0.0054	16.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|564288410|ref|YP_008874611.1|	-	0.053	12.9	0.2	0.071	12.5	0.2	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
SAM_MT	PF04445.13	gi|564288410|ref|YP_008874611.1|	-	0.083	12.3	0.3	0.13	11.7	0.3	1.2	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
TrkA_N	PF02254.18	gi|564288410|ref|YP_008874611.1|	-	0.1	12.9	0.0	0.19	12.0	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
DUF3606	PF12244.8	gi|564288410|ref|YP_008874611.1|	-	0.13	12.2	0.0	0.34	10.9	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3606)
Seryl_tRNA_N	PF02403.22	gi|564288411|ref|YP_008874612.1|	-	1.2e-29	102.7	5.9	1.8e-29	102.1	5.9	1.3	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
tRNA-synt_2b	PF00587.25	gi|564288411|ref|YP_008874612.1|	-	2.3e-26	92.8	0.0	1.7e-25	90.0	0.0	1.9	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
FapA	PF03961.13	gi|564288411|ref|YP_008874612.1|	-	0.069	11.7	3.9	0.1	11.2	3.9	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Endotoxin_C2	PF18449.1	gi|564288411|ref|YP_008874612.1|	-	0.086	13.2	0.8	3	8.2	0.7	2.2	2	0	0	2	2	2	0	Delta	endotoxin
Golgin_A5	PF09787.9	gi|564288411|ref|YP_008874612.1|	-	0.21	11.1	5.4	0.3	10.5	5.4	1.2	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
ZapB	PF06005.12	gi|564288411|ref|YP_008874612.1|	-	0.22	12.0	15.7	0.29	11.6	0.7	2.9	2	2	2	4	4	4	0	Cell	division	protein	ZapB
GreA_GreB_N	PF03449.15	gi|564288411|ref|YP_008874612.1|	-	0.24	11.6	11.3	0.71	10.1	11.3	1.8	1	0	0	1	1	1	0	Transcription	elongation	factor,	N-terminal
APG6_N	PF17675.1	gi|564288411|ref|YP_008874612.1|	-	0.29	11.7	11.0	0.67	10.5	11.0	1.6	1	0	0	1	1	1	0	Apg6	coiled-coil	region
KELK	PF15796.5	gi|564288411|ref|YP_008874612.1|	-	0.34	11.4	10.3	0.83	10.1	10.2	1.7	1	1	0	1	1	1	0	KELK-motif	containing	domain	of	MRCK	Ser/Thr	protein	kinase
HlyD_2	PF12700.7	gi|564288411|ref|YP_008874612.1|	-	0.51	9.0	3.4	0.71	8.5	3.4	1.1	1	0	0	1	1	1	0	HlyD	family	secretion	protein
UPF0184	PF03670.13	gi|564288411|ref|YP_008874612.1|	-	2.5	8.5	8.4	3.6	8.0	4.5	2.7	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
V-SNARE	PF05008.15	gi|564288411|ref|YP_008874612.1|	-	3.8	8.0	9.3	1.3e+02	3.1	0.0	3.1	2	1	1	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
Usp	PF00582.26	gi|564288412|ref|YP_008874613.1|	-	6e-33	114.3	4.6	6.9e-33	114.1	4.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
SRP54	PF00448.22	gi|564288412|ref|YP_008874613.1|	-	0.044	13.4	0.2	0.085	12.5	0.1	1.5	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DXP_reductoisom	PF02670.16	gi|564288412|ref|YP_008874613.1|	-	0.046	14.4	0.3	0.063	14.0	0.3	1.2	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
PheRS_DBD1	PF18552.1	gi|564288412|ref|YP_008874613.1|	-	0.073	12.8	0.7	2.1	8.2	0.1	2.4	2	0	0	2	2	2	0	PheRS	DNA	binding	domain	1
Lactamase_B	PF00753.27	gi|564288413|ref|YP_008874614.1|	-	5.8e-25	88.4	11.1	9.4e-25	87.8	11.1	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|564288413|ref|YP_008874614.1|	-	2.3e-06	27.3	1.6	8.8e-06	25.4	1.5	2.0	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
Na_H_Exchanger	PF00999.21	gi|564288414|ref|YP_008874615.1|	-	3.8e-34	118.1	41.9	5e-34	117.7	41.9	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.18	gi|564288414|ref|YP_008874615.1|	-	3.7e-31	107.8	1.9	3.7e-31	107.8	1.9	2.1	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564288414|ref|YP_008874615.1|	-	1e-08	34.9	0.3	2.5e-08	33.6	0.1	1.8	2	0	0	2	2	1	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|564288414|ref|YP_008874615.1|	-	1.4e-06	28.6	0.3	4.4e-06	27.1	0.3	1.8	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Epimerase	PF01370.21	gi|564288414|ref|YP_008874615.1|	-	0.00011	21.8	0.2	0.00018	21.1	0.2	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
F420_oxidored	PF03807.17	gi|564288414|ref|YP_008874615.1|	-	0.0002	21.9	1.4	0.0002	21.9	1.4	4.3	3	1	1	4	4	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.12	gi|564288414|ref|YP_008874615.1|	-	0.00026	20.6	0.1	0.00063	19.4	0.1	1.6	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
ApbA	PF02558.16	gi|564288414|ref|YP_008874615.1|	-	0.00049	19.8	0.1	0.00049	19.8	0.1	2.9	4	0	0	4	4	4	1	Ketopantoate	reductase	PanE/ApbA
FAD_binding_3	PF01494.19	gi|564288414|ref|YP_008874615.1|	-	0.00057	19.2	0.1	0.00079	18.8	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564288414|ref|YP_008874615.1|	-	0.00083	19.4	2.9	0.0094	15.9	0.1	2.9	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox_2	PF07992.14	gi|564288414|ref|YP_008874615.1|	-	0.0039	16.5	0.2	0.0078	15.5	0.2	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Sacchrp_dh_NADP	PF03435.18	gi|564288414|ref|YP_008874615.1|	-	0.0039	17.4	0.5	0.013	15.7	0.4	1.9	1	1	1	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
FAD_binding_2	PF00890.24	gi|564288414|ref|YP_008874615.1|	-	0.004	16.3	0.6	0.0097	15.0	0.6	1.7	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_2	PF03446.15	gi|564288414|ref|YP_008874615.1|	-	0.0092	16.2	0.4	0.053	13.7	0.1	2.4	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DAO	PF01266.24	gi|564288414|ref|YP_008874615.1|	-	0.0098	15.5	0.2	0.019	14.5	0.2	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|564288414|ref|YP_008874615.1|	-	0.01	16.4	1.0	0.036	14.6	0.6	2.2	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|564288414|ref|YP_008874615.1|	-	0.011	15.4	0.1	0.018	14.6	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|564288414|ref|YP_008874615.1|	-	0.018	15.2	0.1	0.069	13.4	0.1	2.1	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|564288414|ref|YP_008874615.1|	-	0.022	14.6	0.5	0.022	14.6	0.5	2.1	2	0	0	2	2	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|564288414|ref|YP_008874615.1|	-	0.026	15.1	0.0	0.058	13.9	0.0	1.7	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Lycopene_cycl	PF05834.12	gi|564288414|ref|YP_008874615.1|	-	0.044	12.8	0.1	0.064	12.3	0.1	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
CbiJ	PF02571.14	gi|564288414|ref|YP_008874615.1|	-	0.045	13.2	0.4	0.095	12.2	0.4	1.5	1	0	0	1	1	1	0	Precorrin-6x	reductase	CbiJ/CobK
2-Hacid_dh_C	PF02826.19	gi|564288414|ref|YP_008874615.1|	-	0.1	12.0	0.1	0.1	12.0	0.1	2.6	3	0	0	3	3	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.14	gi|564288414|ref|YP_008874615.1|	-	0.12	11.0	0.1	0.19	10.4	0.1	1.2	1	0	0	1	1	1	0	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|564288414|ref|YP_008874615.1|	-	0.24	10.6	0.6	0.51	9.6	0.1	1.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
DUF2160	PF09928.9	gi|564288414|ref|YP_008874615.1|	-	4.2	7.8	7.0	0.66	10.3	0.1	2.9	2	1	0	2	2	2	0	Predicted	small	integral	membrane	protein	(DUF2160)
4HBT	PF03061.22	gi|564288415|ref|YP_008874616.1|	-	5.7e-15	55.4	0.7	8e-15	55.0	0.7	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.6	gi|564288415|ref|YP_008874616.1|	-	4.3e-06	26.9	0.0	6.4e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.6	gi|564288415|ref|YP_008874616.1|	-	6.3e-05	23.4	0.1	7.8e-05	23.0	0.1	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
EF-hand_5	PF13202.6	gi|564288416|ref|YP_008874617.1|	-	0.058	12.9	0.0	0.091	12.3	0.0	1.4	1	0	0	1	1	1	0	EF	hand
NUDIX	PF00293.28	gi|564288417|ref|YP_008874618.1|	-	1.9e-11	44.1	0.1	2.2e-11	43.9	0.1	1.2	1	0	0	1	1	1	1	NUDIX	domain
Fungal_trans_2	PF11951.8	gi|564288417|ref|YP_008874618.1|	-	0.16	10.8	0.0	0.19	10.5	0.0	1.1	1	0	0	1	1	1	0	Fungal	specific	transcription	factor	domain
Thiolase_N	PF00108.23	gi|564288418|ref|YP_008874619.1|	-	2e-75	253.5	1.0	3.3e-75	252.8	1.0	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564288418|ref|YP_008874619.1|	-	2.6e-42	143.3	0.0	1.1e-41	141.3	0.0	2.0	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|564288418|ref|YP_008874619.1|	-	5.8e-06	26.1	0.3	1.5e-05	24.8	0.3	1.7	1	0	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
zf-FLZ	PF04570.14	gi|564288418|ref|YP_008874619.1|	-	0.0087	15.5	0.1	0.016	14.7	0.1	1.4	1	0	0	1	1	1	1	zinc-finger	of	the	FCS-type,	C2-C2
ACP_syn_III	PF08545.10	gi|564288418|ref|YP_008874619.1|	-	0.058	13.3	2.0	0.7	9.8	0.0	2.8	3	0	0	3	3	3	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DDE_Tnp_IS66	PF03050.14	gi|564288418|ref|YP_008874619.1|	-	0.097	12.1	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	Transposase	IS66	family
Pyridox_ox_2	PF12900.7	gi|564288419|ref|YP_008874620.1|	-	4.2e-17	62.4	0.0	4.8e-17	62.3	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288419|ref|YP_008874620.1|	-	2.1e-05	24.6	0.0	2.8e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
YjbR	PF04237.13	gi|564288419|ref|YP_008874620.1|	-	0.064	13.8	0.0	0.12	12.9	0.0	1.5	1	0	0	1	1	1	0	YjbR
DUF1508	PF07411.12	gi|564288420|ref|YP_008874621.1|	-	2.8e-86	283.2	26.8	2.3e-17	62.6	0.3	6.0	6	0	0	6	6	6	5	Domain	of	unknown	function	(DUF1508)
Stimulus_sens_1	PF13756.6	gi|564288420|ref|YP_008874621.1|	-	0.0023	18.5	13.2	5.2	7.7	0.0	6.1	4	2	2	6	6	5	1	Stimulus-sensing	domain
DUF2892	PF11127.8	gi|564288420|ref|YP_008874621.1|	-	0.008	16.2	14.0	0.032	14.3	3.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2892)
Spore_III_AF	PF09581.10	gi|564288420|ref|YP_008874621.1|	-	0.015	15.4	0.5	0.034	14.2	0.5	1.5	1	0	0	1	1	1	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
TMEM238	PF15125.6	gi|564288420|ref|YP_008874621.1|	-	0.023	14.9	1.0	0.023	14.9	1.0	3.0	3	0	0	3	3	3	0	TMEM238	protein	family
UPF0242	PF06785.11	gi|564288420|ref|YP_008874621.1|	-	0.05	13.7	0.3	0.29	11.2	0.0	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF2157	PF09925.9	gi|564288420|ref|YP_008874621.1|	-	0.077	12.8	6.6	2.4	7.9	3.8	2.5	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2157)
DUF2298	PF10060.9	gi|564288420|ref|YP_008874621.1|	-	0.083	11.6	3.1	0.12	11.0	3.1	1.1	1	0	0	1	1	1	0	Uncharacterized	membrane	protein	(DUF2298)
ERM	PF00769.19	gi|564288420|ref|YP_008874621.1|	-	0.19	11.5	18.9	0.31	10.8	18.9	1.3	1	0	0	1	1	1	0	Ezrin/radixin/moesin	family
Wzy_C	PF04932.15	gi|564288420|ref|YP_008874621.1|	-	0.19	11.3	4.6	0.59	9.7	4.6	1.9	1	1	0	1	1	1	0	O-Antigen	ligase
XK-related	PF09815.9	gi|564288420|ref|YP_008874621.1|	-	0.35	9.9	1.0	0.51	9.3	1.0	1.2	1	0	0	1	1	1	0	XK-related	protein
LapA_dom	PF06305.11	gi|564288420|ref|YP_008874621.1|	-	0.54	10.1	7.2	15	5.5	0.0	3.9	3	0	0	3	3	3	0	Lipopolysaccharide	assembly	protein	A	domain
DUF3748	PF12566.8	gi|564288420|ref|YP_008874621.1|	-	2	8.4	5.8	5.1	7.1	0.2	3.5	4	1	1	5	5	5	0	Protein	of	unknown	function	(DUF3748)
DUF2721	PF11026.8	gi|564288420|ref|YP_008874621.1|	-	2.1	8.2	4.2	28	4.6	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2721)
G0-G1_switch_2	PF15103.6	gi|564288420|ref|YP_008874621.1|	-	3.3	8.2	10.6	1.7	9.1	1.2	3.3	3	1	0	3	3	3	0	G0/G1	switch	protein	2
YrhK	PF14145.6	gi|564288420|ref|YP_008874621.1|	-	6.8	6.6	9.5	21	5.1	0.4	3.4	2	1	1	3	3	3	0	YrhK-like	protein
Vfa1	PF08432.10	gi|564288420|ref|YP_008874621.1|	-	8.2	6.7	8.5	14	6.0	8.5	1.3	1	0	0	1	1	1	0	AAA-ATPase	Vps4-associated	protein	1
BAF1_ABF1	PF04684.13	gi|564288420|ref|YP_008874621.1|	-	8.3	5.3	9.0	12	4.9	9.0	1.1	1	0	0	1	1	1	0	BAF1	/	ABF1	chromatin	reorganising	factor
AAA	PF00004.29	gi|564288421|ref|YP_008874622.1|	-	1.6e-38	132.1	0.0	3.4e-38	131.0	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|564288421|ref|YP_008874622.1|	-	9.8e-12	44.5	0.0	3.2e-11	42.8	0.0	1.9	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_5	PF07728.14	gi|564288421|ref|YP_008874622.1|	-	4.4e-06	26.7	0.0	3.2e-05	24.0	0.0	2.5	2	1	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.12	gi|564288421|ref|YP_008874622.1|	-	0.00073	19.3	0.0	0.0015	18.3	0.0	1.6	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|564288421|ref|YP_008874622.1|	-	0.00081	19.7	0.4	0.029	14.6	0.0	2.8	2	1	1	3	3	3	1	AAA	domain
AAA_28	PF13521.6	gi|564288421|ref|YP_008874622.1|	-	0.00086	19.6	0.3	0.011	16.0	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|564288421|ref|YP_008874622.1|	-	0.00087	19.7	4.4	0.0018	18.7	1.3	3.0	2	1	0	2	2	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564288421|ref|YP_008874622.1|	-	0.00096	19.3	0.2	0.0028	17.8	0.0	2.0	2	1	0	2	2	1	1	AAA	domain
AAA_18	PF13238.6	gi|564288421|ref|YP_008874622.1|	-	0.0011	19.5	0.1	0.0054	17.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|564288421|ref|YP_008874622.1|	-	0.0025	17.4	0.0	0.0045	16.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
Cytidylate_kin2	PF13189.6	gi|564288421|ref|YP_008874622.1|	-	0.0043	17.2	0.0	0.014	15.6	0.0	1.8	1	0	0	1	1	1	1	Cytidylate	kinase-like	family
IstB_IS21	PF01695.17	gi|564288421|ref|YP_008874622.1|	-	0.0053	16.5	0.0	0.012	15.3	0.0	1.6	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
TIP49	PF06068.13	gi|564288421|ref|YP_008874622.1|	-	0.0055	16.0	0.0	0.0095	15.2	0.0	1.3	1	0	0	1	1	1	1	TIP49	P-loop	domain
AAA_2	PF07724.14	gi|564288421|ref|YP_008874622.1|	-	0.0068	16.5	0.8	0.012	15.7	0.0	1.9	2	0	0	2	2	1	1	AAA	domain	(Cdc48	subfamily)
DUF815	PF05673.13	gi|564288421|ref|YP_008874622.1|	-	0.0068	15.6	0.1	0.011	14.9	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Cytidylate_kin	PF02224.18	gi|564288421|ref|YP_008874622.1|	-	0.01	15.6	0.5	0.078	12.7	0.0	2.5	2	1	1	3	3	3	0	Cytidylate	kinase
AAA_25	PF13481.6	gi|564288421|ref|YP_008874622.1|	-	0.014	15.0	0.5	0.1	12.1	0.0	2.6	1	1	2	3	3	3	0	AAA	domain
AAA_11	PF13086.6	gi|564288421|ref|YP_008874622.1|	-	0.018	14.8	0.0	0.034	13.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|564288421|ref|YP_008874622.1|	-	0.019	14.3	0.0	0.036	13.4	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_17	PF13207.6	gi|564288421|ref|YP_008874622.1|	-	0.022	15.2	0.0	0.083	13.3	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
SKI	PF01202.22	gi|564288421|ref|YP_008874622.1|	-	0.025	14.7	0.0	0.063	13.4	0.0	1.7	1	0	0	1	1	1	0	Shikimate	kinase
ABC_tran	PF00005.27	gi|564288421|ref|YP_008874622.1|	-	0.03	14.8	0.0	0.073	13.6	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
MMR_HSR1	PF01926.23	gi|564288421|ref|YP_008874622.1|	-	0.041	14.0	0.0	0.12	12.4	0.0	1.9	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_3	PF07726.11	gi|564288421|ref|YP_008874622.1|	-	0.058	13.3	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.6	gi|564288421|ref|YP_008874622.1|	-	0.059	13.5	0.0	0.26	11.4	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
RNA_helicase	PF00910.22	gi|564288421|ref|YP_008874622.1|	-	0.07	13.5	0.0	0.13	12.6	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
T2SSE	PF00437.20	gi|564288421|ref|YP_008874622.1|	-	0.075	12.1	0.0	0.14	11.2	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_8	PF12780.7	gi|564288421|ref|YP_008874622.1|	-	0.17	11.2	0.0	0.31	10.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region	D4
Lactamase_B_2	PF12706.7	gi|564288423|ref|YP_008874624.1|	-	6.2e-18	65.0	1.3	8.1e-18	64.7	1.3	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|564288423|ref|YP_008874624.1|	-	0.0051	16.9	2.7	0.0051	16.9	2.7	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
DUF533	PF04391.12	gi|564288424|ref|YP_008874625.1|	-	0.24	10.9	2.3	0.37	10.4	2.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF533)
Tannase	PF07519.11	gi|564288425|ref|YP_008874626.1|	-	0.01	14.8	0.0	0.013	14.4	0.0	1.1	1	0	0	1	1	1	0	Tannase	and	feruloyl	esterase
HTH_20	PF12840.7	gi|564288427|ref|YP_008874628.1|	-	2e-05	24.5	0.0	5.5e-05	23.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Zn_Tnp_IS1595	PF12760.7	gi|564288427|ref|YP_008874628.1|	-	0.13	12.2	8.2	0.26	11.3	3.9	2.4	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|564288427|ref|YP_008874628.1|	-	4.4	7.4	7.9	8	6.5	0.2	3.4	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
GTP_EFTU	PF00009.27	gi|564288428|ref|YP_008874629.1|	-	3.2e-29	101.9	2.6	1.2e-28	100.0	2.6	1.8	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.11	gi|564288428|ref|YP_008874629.1|	-	3.6e-29	100.8	0.0	7.1e-29	99.9	0.0	1.5	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
RsgA_GTPase	PF03193.16	gi|564288428|ref|YP_008874629.1|	-	3.2e-06	27.2	0.2	0.00048	20.1	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|564288428|ref|YP_008874629.1|	-	9.4e-05	22.5	0.0	0.00026	21.0	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU_D2	PF03144.25	gi|564288428|ref|YP_008874629.1|	-	0.00032	21.0	1.1	0.00094	19.5	1.1	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
FeoB_N	PF02421.18	gi|564288428|ref|YP_008874629.1|	-	0.0063	16.1	0.3	2.3	7.8	0.1	2.5	2	1	0	2	2	2	2	Ferrous	iron	transport	protein	B
PduV-EutP	PF10662.9	gi|564288428|ref|YP_008874629.1|	-	0.022	14.5	0.2	0.14	11.9	0.0	2.1	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
SRPRB	PF09439.10	gi|564288428|ref|YP_008874629.1|	-	0.05	13.0	0.1	1.4	8.3	0.1	2.2	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
MMR_HSR1_Xtn	PF16897.5	gi|564288428|ref|YP_008874629.1|	-	0.068	13.2	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	C-terminal	region	of	MMR_HSR1	domain
PIN_9	PF18477.1	gi|564288429|ref|YP_008874630.1|	-	1.9e-41	141.0	0.6	2.1e-41	140.8	0.6	1.0	1	0	0	1	1	1	1	PIN	like	domain
DUF188	PF02639.14	gi|564288429|ref|YP_008874630.1|	-	6.1e-06	25.9	0.5	8.2e-06	25.5	0.5	1.2	1	0	0	1	1	1	1	Uncharacterized	BCR,	YaiI/YqxD	family	COG1671
PIN_4	PF13638.6	gi|564288429|ref|YP_008874630.1|	-	0.032	14.5	0.0	0.074	13.3	0.0	1.7	1	1	0	1	1	1	0	PIN	domain
PIN_3	PF13470.6	gi|564288429|ref|YP_008874630.1|	-	0.058	14.2	8.2	0.037	14.8	4.7	1.9	1	1	1	2	2	2	0	PIN	domain
DUF1471	PF07338.13	gi|564288429|ref|YP_008874630.1|	-	0.71	9.9	3.8	1.2	9.2	0.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1471)
S1	PF00575.23	gi|564288430|ref|YP_008874631.1|	-	7.5e-15	55.0	0.2	1.4e-14	54.1	0.2	1.5	1	0	0	1	1	1	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.17	gi|564288430|ref|YP_008874631.1|	-	4.9e-13	49.2	0.0	8e-13	48.6	0.0	1.4	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
RNA_pol_Rbc25	PF08292.12	gi|564288430|ref|YP_008874631.1|	-	0.033	14.4	0.0	0.049	13.9	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	Rpc25
S1_2	PF13509.6	gi|564288430|ref|YP_008874631.1|	-	0.11	12.6	0.0	2.3	8.3	0.0	2.3	1	1	1	2	2	2	0	S1	domain
KH_6	PF15985.5	gi|564288430|ref|YP_008874631.1|	-	0.12	12.7	0.0	0.2	12.0	0.0	1.4	1	0	0	1	1	1	0	KH	domain
PUA_3	PF17785.1	gi|564288430|ref|YP_008874631.1|	-	0.2	11.5	0.9	0.87	9.4	0.9	2.2	1	1	0	1	1	1	0	PUA-like	domain
Spt4	PF06093.13	gi|564288431|ref|YP_008874632.1|	-	9.5e-13	48.1	0.1	1.2e-12	47.7	0.1	1.2	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
Nudix_N_2	PF14803.6	gi|564288431|ref|YP_008874632.1|	-	0.66	9.9	6.2	1.8	8.5	1.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
DUF359	PF04019.12	gi|564288432|ref|YP_008874633.1|	-	2.3e-39	133.9	0.0	3.1e-39	133.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
HisKA	PF00512.25	gi|564288432|ref|YP_008874633.1|	-	0.0071	16.4	0.2	0.49	10.5	0.0	2.6	2	1	0	2	2	2	2	His	Kinase	A	(phospho-acceptor)	domain
UBA_4	PF14555.6	gi|564288432|ref|YP_008874633.1|	-	0.058	13.2	0.1	0.12	12.3	0.1	1.5	1	0	0	1	1	1	0	UBA-like	domain
UPF0020	PF01170.18	gi|564288433|ref|YP_008874634.1|	-	3.3e-20	72.6	0.0	9.3e-19	67.9	0.0	2.6	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.6	gi|564288433|ref|YP_008874634.1|	-	3.2e-05	24.6	0.9	0.00013	22.6	0.1	2.5	3	1	0	3	3	3	1	Methyltransferase	domain
AviRa	PF11599.8	gi|564288433|ref|YP_008874634.1|	-	5.1e-05	22.8	0.0	0.032	13.7	0.0	2.4	1	1	1	2	2	2	2	RRNA	methyltransferase	AviRa
Methyltransf_11	PF08241.12	gi|564288433|ref|YP_008874634.1|	-	0.0021	18.7	0.0	0.007	17.0	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
THUMP	PF02926.17	gi|564288433|ref|YP_008874634.1|	-	0.0036	17.4	0.0	0.0054	16.8	0.0	1.2	1	0	0	1	1	1	1	THUMP	domain
Methyltransf_31	PF13847.6	gi|564288433|ref|YP_008874634.1|	-	0.016	15.0	0.0	0.066	13.0	0.1	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|564288433|ref|YP_008874634.1|	-	0.055	12.7	0.0	0.091	12.0	0.0	1.3	1	0	0	1	1	1	0	N-6	DNA	Methylase
Cons_hypoth95	PF03602.15	gi|564288433|ref|YP_008874634.1|	-	0.11	12.1	0.0	0.39	10.4	0.0	1.8	1	1	0	1	1	1	0	Conserved	hypothetical	protein	95
HalOD1	PF18545.1	gi|564291271|ref|YP_008874636.1|	-	4.3e-18	65.3	0.3	4.8e-18	65.2	0.3	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
HisG	PF01634.18	gi|564288435|ref|YP_008874637.1|	-	1.2e-50	171.6	0.3	1.8e-50	171.0	0.3	1.3	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.11	gi|564288435|ref|YP_008874637.1|	-	2.2e-26	91.8	0.1	3.9e-26	91.0	0.1	1.4	1	0	0	1	1	1	1	HisG,	C-terminal	domain
MFS_1	PF07690.16	gi|564288436|ref|YP_008874638.1|	-	3.9e-42	144.4	51.6	7.6e-31	107.3	28.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564288436|ref|YP_008874638.1|	-	0.00017	20.6	5.2	0.00017	20.6	5.2	2.2	1	1	0	2	2	2	2	MFS_1	like	family
UNC-93	PF05978.16	gi|564288436|ref|YP_008874638.1|	-	0.027	14.2	5.5	0.14	11.9	1.2	2.4	2	0	0	2	2	2	0	Ion	channel	regulatory	protein	UNC-93
LacY_symp	PF01306.19	gi|564288436|ref|YP_008874638.1|	-	0.89	8.3	8.5	1.3	7.7	0.2	2.5	2	1	0	2	2	2	0	LacY	proton/sugar	symporter
Amidohydro_1	PF01979.20	gi|564288437|ref|YP_008874639.1|	-	2.6e-70	237.4	4.6	3e-70	237.2	4.6	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564288437|ref|YP_008874639.1|	-	3e-19	69.9	19.6	4.9e-15	56.0	13.8	2.3	1	1	1	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|564288437|ref|YP_008874639.1|	-	4.5e-06	26.2	0.0	8.7e-06	25.3	0.0	1.4	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
PMSI1	PF15322.6	gi|564288438|ref|YP_008874640.1|	-	0.099	12.1	1.0	0.2	11.1	1.0	1.4	1	0	0	1	1	1	0	Protein	missing	in	infertile	sperm	1,	putative
AdoHcyase	PF05221.17	gi|564288439|ref|YP_008874641.1|	-	9.2e-52	176.0	0.0	6.4e-26	91.2	0.0	2.0	1	1	1	2	2	2	2	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.21	gi|564288439|ref|YP_008874641.1|	-	4.1e-48	163.5	1.4	4.8e-48	163.3	0.3	1.6	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564288439|ref|YP_008874641.1|	-	3.8e-10	39.4	0.1	6.6e-10	38.6	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|564288439|ref|YP_008874641.1|	-	1.4e-05	24.7	0.8	2.4e-05	23.9	0.1	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Shikimate_DH	PF01488.20	gi|564288439|ref|YP_008874641.1|	-	0.0022	18.1	0.0	0.0041	17.2	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
ELFV_dehydrog	PF00208.21	gi|564288439|ref|YP_008874641.1|	-	0.0049	16.6	0.1	0.008	15.9	0.1	1.4	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
TrkA_N	PF02254.18	gi|564288439|ref|YP_008874641.1|	-	0.019	15.2	0.1	0.042	14.1	0.1	1.7	1	0	0	1	1	1	0	TrkA-N	domain
Urocanase	PF01175.18	gi|564288439|ref|YP_008874641.1|	-	0.066	12.9	0.2	0.12	12.0	0.2	1.3	1	0	0	1	1	1	0	Urocanase	Rossmann-like	domain
Hexapep	PF00132.24	gi|564288440|ref|YP_008874642.1|	-	1.6e-16	59.3	10.2	2.5e-09	36.5	3.7	3.6	2	1	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564288440|ref|YP_008874642.1|	-	7.3e-10	38.4	13.8	1.7e-08	34.1	4.4	4.0	2	1	2	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.12	gi|564288440|ref|YP_008874642.1|	-	0.0034	16.4	0.0	0.0075	15.3	0.0	1.5	1	1	1	2	2	2	1	L-fucokinase
DUF4954	PF16314.5	gi|564288440|ref|YP_008874642.1|	-	0.48	8.5	2.5	2.2	6.3	0.4	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4954)
DNA_primase_lrg	PF04104.14	gi|564288442|ref|YP_008874644.1|	-	1.9e-37	129.1	0.0	3.8e-37	128.2	0.0	1.5	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
Siah-Interact_N	PF09032.11	gi|564288442|ref|YP_008874644.1|	-	0.07	13.4	0.7	0.16	12.3	0.0	2.0	2	0	0	2	2	2	0	Siah	interacting	protein,	N	terminal
Tad	PF13400.6	gi|564288443|ref|YP_008874645.1|	-	0.3	11.4	6.1	1.2	9.5	0.7	2.1	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
MMPL	PF03176.15	gi|564288443|ref|YP_008874645.1|	-	0.63	8.9	6.0	0.69	8.8	6.0	1.0	1	0	0	1	1	1	0	MMPL	family
SWIM	PF04434.17	gi|564288444|ref|YP_008874646.1|	-	8.5e-05	22.1	0.1	0.00018	21.1	0.1	1.6	1	0	0	1	1	1	1	SWIM	zinc	finger
Nudix_N_2	PF14803.6	gi|564288444|ref|YP_008874646.1|	-	0.048	13.6	0.1	0.048	13.6	0.1	2.6	3	0	0	3	3	3	0	Nudix	N-terminal
Hjc	PF01870.18	gi|564288445|ref|YP_008874647.1|	-	7e-30	102.9	0.0	9.6e-30	102.4	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
DUF4382	PF14321.6	gi|564288446|ref|YP_008874648.1|	-	1.4e-20	73.9	4.8	1.4e-20	73.9	4.8	2.8	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4382)
TAT_signal	PF10518.9	gi|564288446|ref|YP_008874648.1|	-	0.75	9.7	3.5	1.4	8.9	3.5	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RR_TM4-6	PF06459.12	gi|564288446|ref|YP_008874648.1|	-	2.1	8.1	11.8	0.6	9.9	2.9	2.1	2	0	0	2	2	2	0	Ryanodine	Receptor	TM	4-6
RNA_pol_Rpc4	PF05132.14	gi|564288446|ref|YP_008874648.1|	-	9.4	6.7	10.4	2.6	8.5	0.7	2.6	3	0	0	3	3	3	0	RNA	polymerase	III	RPC4
Virul_fac_BrkB	PF03631.15	gi|564288447|ref|YP_008874649.1|	-	0.0016	18.1	5.3	0.0021	17.7	5.3	1.2	1	0	0	1	1	1	1	Virulence	factor	BrkB
Abhydrolase_6	PF12697.7	gi|564288448|ref|YP_008874650.1|	-	2.4e-13	51.2	10.0	3e-13	50.9	10.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|564288448|ref|YP_008874650.1|	-	9.8e-13	48.3	0.1	4.1e-11	43.0	0.1	2.1	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564288448|ref|YP_008874650.1|	-	4.5e-08	32.7	0.0	6.7e-08	32.1	0.0	1.1	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
FSH1	PF03959.13	gi|564288448|ref|YP_008874650.1|	-	0.058	13.1	0.0	3.1	7.4	0.0	2.1	2	0	0	2	2	2	0	Serine	hydrolase	(FSH1)
PGAP1	PF07819.13	gi|564288448|ref|YP_008874650.1|	-	0.071	12.8	0.0	0.098	12.4	0.0	1.4	1	0	0	1	1	1	0	PGAP1-like	protein
PCNA_N	PF00705.18	gi|564288449|ref|YP_008874651.1|	-	2.4e-09	37.0	0.1	4.5e-09	36.1	0.1	1.4	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.15	gi|564288449|ref|YP_008874651.1|	-	0.0001	22.5	0.0	0.00028	21.0	0.0	1.9	1	1	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.13	gi|564288449|ref|YP_008874651.1|	-	0.11	11.9	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	Rad9
Cu-oxidase_3	PF07732.15	gi|564288450|ref|YP_008874652.1|	-	3.7e-14	52.8	0.1	6.6e-14	51.9	0.1	1.4	1	0	0	1	1	1	1	Multicopper	oxidase
Cu-oxidase_2	PF07731.14	gi|564288450|ref|YP_008874652.1|	-	1.9e-09	37.3	0.4	1.3e-05	25.0	0.0	3.3	3	2	0	3	3	3	2	Multicopper	oxidase
Copper-bind	PF00127.20	gi|564288450|ref|YP_008874652.1|	-	0.0001	22.7	0.6	0.0024	18.3	0.1	2.6	2	1	0	2	2	2	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|564288450|ref|YP_008874652.1|	-	0.0015	18.6	0.0	0.0043	17.1	0.0	1.9	1	1	0	1	1	1	1	Cupredoxin-like	domain
FtsJ	PF01728.19	gi|564288451|ref|YP_008874654.1|	-	4.5e-54	183.2	0.0	5.4e-54	183.0	0.0	1.1	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
TRAM	PF01938.20	gi|564288451|ref|YP_008874654.1|	-	6.6e-15	54.9	1.8	1.3e-14	53.9	1.8	1.5	1	0	0	1	1	1	1	TRAM	domain
Methyltransf_31	PF13847.6	gi|564288451|ref|YP_008874654.1|	-	0.0061	16.4	0.0	0.028	14.2	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288451|ref|YP_008874654.1|	-	0.054	14.2	0.1	0.23	12.2	0.1	2.1	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288451|ref|YP_008874654.1|	-	0.18	11.6	0.0	0.29	10.9	0.0	1.3	1	1	0	1	1	1	0	Methyltransferase	domain
Vut_1	PF02592.15	gi|564288452|ref|YP_008874655.1|	-	1.3e-50	171.6	5.2	1.3e-50	171.6	5.2	1.7	2	0	0	2	2	2	1	Putative	vitamin	uptake	transporter
RHH_1	PF01402.21	gi|564288453|ref|YP_008874656.1|	-	0.00029	20.6	0.3	0.00072	19.4	0.0	1.8	1	1	1	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|564288453|ref|YP_008874656.1|	-	0.0098	16.1	0.0	0.01	16.0	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
TatC	PF00902.18	gi|564288454|ref|YP_008874657.1|	-	4.9e-66	222.5	45.7	7.9e-41	140.2	13.5	2.8	3	0	0	3	3	3	2	Sec-independent	protein	translocase	protein	(TatC)
DUF2207	PF09972.9	gi|564288454|ref|YP_008874657.1|	-	0.34	9.6	0.0	0.34	9.6	0.0	4.1	2	2	1	3	3	3	0	Predicted	membrane	protein	(DUF2207)
TatC	PF00902.18	gi|564288455|ref|YP_008874658.1|	-	1.8e-44	152.1	13.3	1.8e-44	152.1	13.3	2.4	3	0	0	3	3	3	1	Sec-independent	protein	translocase	protein	(TatC)
DHHC	PF01529.20	gi|564288455|ref|YP_008874658.1|	-	0.23	11.6	4.0	0.3	11.2	0.8	2.2	2	0	0	2	2	2	0	DHHC	palmitoyltransferase
MadM	PF03818.13	gi|564288455|ref|YP_008874658.1|	-	3.6	7.5	7.9	21	5.1	0.3	3.7	3	0	0	3	3	3	0	Malonate/sodium	symporter	MadM	subunit
His_Phos_1	PF00300.22	gi|564288456|ref|YP_008874659.1|	-	4.3e-48	163.6	0.2	4.7e-48	163.5	0.2	1.0	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
His_Phos_2	PF00328.22	gi|564288456|ref|YP_008874659.1|	-	0.0054	16.1	0.0	0.008	15.6	0.0	1.3	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	2)
tRNA_Me_trans	PF03054.16	gi|564288457|ref|YP_008874660.1|	-	2.4e-09	36.4	0.1	8.6e-06	24.8	0.2	2.7	2	1	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|564288457|ref|YP_008874660.1|	-	4.8e-09	36.3	0.6	7.7e-09	35.7	0.4	1.3	1	1	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|564288457|ref|YP_008874660.1|	-	8.7e-09	34.8	0.0	1.6e-08	34.0	0.0	1.4	1	0	0	1	1	1	1	NAD	synthase
QueC	PF06508.13	gi|564288457|ref|YP_008874660.1|	-	0.00015	21.3	0.0	0.00049	19.7	0.0	1.8	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.20	gi|564288457|ref|YP_008874660.1|	-	0.0038	17.0	0.2	0.011	15.5	0.1	1.9	1	1	0	1	1	1	1	PP-loop	family
Arginosuc_synth	PF00764.19	gi|564288457|ref|YP_008874660.1|	-	0.01	15.2	0.0	0.014	14.7	0.0	1.2	1	0	0	1	1	1	0	Arginosuccinate	synthase
ThiI	PF02568.14	gi|564288457|ref|YP_008874660.1|	-	0.023	14.3	0.0	0.04	13.5	0.0	1.4	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
QueH	PF02677.14	gi|564288457|ref|YP_008874660.1|	-	0.035	14.2	0.0	0.076	13.1	0.0	1.5	1	0	0	1	1	1	0	Epoxyqueuosine	reductase	QueH
HHH_5	PF14520.6	gi|564288458|ref|YP_008874661.1|	-	1.5e-06	28.7	0.2	1.5e-06	28.7	0.2	2.8	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
MutS_V	PF00488.21	gi|564288458|ref|YP_008874661.1|	-	1.1e-05	25.6	0.0	0.00017	21.7	0.0	2.4	2	0	0	2	2	2	1	MutS	domain	V
HHH	PF00633.23	gi|564288458|ref|YP_008874661.1|	-	4.6e-05	23.1	3.3	0.0044	16.8	0.1	3.7	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
IMS_HHH	PF11798.8	gi|564288458|ref|YP_008874661.1|	-	0.12	12.7	0.0	0.34	11.3	0.0	1.8	1	0	0	1	1	1	0	IMS	family	HHH	motif
DUF1598	PF07643.11	gi|564288458|ref|YP_008874661.1|	-	0.17	12.1	0.0	3.5	7.9	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1598)
PCP_red	PF08369.10	gi|564288458|ref|YP_008874661.1|	-	7.2	6.9	7.3	3.8	7.8	0.1	3.6	3	0	0	3	3	3	0	Proto-chlorophyllide	reductase	57	kD	subunit
AAA_16	PF13191.6	gi|564288459|ref|YP_008874662.1|	-	1.1e-11	45.5	1.3	1.1e-09	38.9	0.1	2.8	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564288459|ref|YP_008874662.1|	-	3.6e-09	37.0	0.0	8.3e-09	35.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564288459|ref|YP_008874662.1|	-	2.3e-06	28.1	0.0	5.4e-06	26.9	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|564288459|ref|YP_008874662.1|	-	2.3e-05	24.3	0.0	0.00026	20.9	0.0	2.7	3	0	0	3	3	3	1	CDC6,	C	terminal	winged	helix	domain
AAA_30	PF13604.6	gi|564288459|ref|YP_008874662.1|	-	0.0025	17.6	0.1	0.017	14.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
TIP49_C	PF17856.1	gi|564288459|ref|YP_008874662.1|	-	0.0028	17.8	0.0	0.0078	16.3	0.0	1.7	1	0	0	1	1	1	1	TIP49	AAA-lid	domain
AAA_7	PF12775.7	gi|564288459|ref|YP_008874662.1|	-	0.0032	17.0	0.0	0.024	14.2	0.0	2.0	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
Rad17	PF03215.15	gi|564288459|ref|YP_008874662.1|	-	0.005	16.8	0.0	0.026	14.4	0.0	2.1	1	1	1	2	2	2	1	Rad17	P-loop	domain
AAA_35	PF14516.6	gi|564288459|ref|YP_008874662.1|	-	0.005	15.7	0.1	0.039	12.8	0.1	2.0	1	1	1	2	2	2	1	AAA-like	domain
Sigma54_activat	PF00158.26	gi|564288459|ref|YP_008874662.1|	-	0.006	16.3	0.0	0.013	15.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|564288459|ref|YP_008874662.1|	-	0.0085	15.8	0.0	0.018	14.8	0.0	1.5	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
NACHT	PF05729.12	gi|564288459|ref|YP_008874662.1|	-	0.01	15.7	0.0	0.024	14.6	0.0	1.7	1	0	0	1	1	1	0	NACHT	domain
T2SSE	PF00437.20	gi|564288459|ref|YP_008874662.1|	-	0.012	14.7	0.0	0.025	13.7	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Gtr1_RagA	PF04670.12	gi|564288459|ref|YP_008874662.1|	-	0.012	14.9	0.0	0.021	14.2	0.0	1.4	1	0	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
AAA_33	PF13671.6	gi|564288459|ref|YP_008874662.1|	-	0.015	15.5	0.0	0.038	14.2	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
DUF815	PF05673.13	gi|564288459|ref|YP_008874662.1|	-	0.016	14.4	0.0	0.11	11.6	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
Zeta_toxin	PF06414.12	gi|564288459|ref|YP_008874662.1|	-	0.02	14.2	0.0	0.044	13.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_11	PF13086.6	gi|564288459|ref|YP_008874662.1|	-	0.028	14.2	0.0	0.059	13.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|564288459|ref|YP_008874662.1|	-	0.035	14.1	0.1	0.25	11.4	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
RP854	PF17460.2	gi|564288459|ref|YP_008874662.1|	-	0.059	13.1	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	RP854
AAA_19	PF13245.6	gi|564288459|ref|YP_008874662.1|	-	0.061	13.6	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|564288459|ref|YP_008874662.1|	-	0.076	13.0	0.0	0.2	11.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|564288459|ref|YP_008874662.1|	-	0.088	13.2	0.0	0.2	12.1	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
IstB_IS21	PF01695.17	gi|564288459|ref|YP_008874662.1|	-	0.095	12.4	0.5	2.5	7.8	0.5	2.4	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
Ribonuc_L-PSP	PF01042.21	gi|564288461|ref|YP_008874665.1|	-	1.1e-26	93.2	0.7	1.4e-26	92.9	0.7	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Methyltrn_RNA_3	PF02598.17	gi|564288461|ref|YP_008874665.1|	-	0.073	12.6	0.1	0.076	12.5	0.1	1.1	1	0	0	1	1	1	0	Putative	RNA	methyltransferase
MatE	PF01554.18	gi|564288462|ref|YP_008874666.1|	-	9.2e-51	171.7	29.5	2.6e-28	98.7	4.7	3.3	2	2	1	3	3	3	2	MatE
Polysacc_synt_C	PF14667.6	gi|564288462|ref|YP_008874666.1|	-	3.3e-08	33.7	9.2	3.3e-08	33.7	9.2	4.4	2	2	2	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
MaoC_dehydratas	PF01575.19	gi|564288463|ref|YP_008874667.1|	-	9.6e-08	31.6	0.0	3.9e-07	29.7	0.0	1.9	1	1	0	1	1	1	1	MaoC	like	domain
4HBT	PF03061.22	gi|564288463|ref|YP_008874667.1|	-	0.00063	20.0	0.2	0.0013	19.0	0.0	1.6	2	0	0	2	2	2	1	Thioesterase	superfamily
MaoC_dehydrat_N	PF13452.6	gi|564288463|ref|YP_008874667.1|	-	0.011	15.8	0.0	0.28	11.3	0.0	2.2	1	1	0	1	1	1	0	N-terminal	half	of	MaoC	dehydratase
Fer4_15	PF13459.6	gi|564288464|ref|YP_008874668.1|	-	1.2e-21	77.2	4.8	1.4e-21	76.9	4.8	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|564288464|ref|YP_008874668.1|	-	6.3e-08	33.0	2.1	1.3e-07	32.1	2.1	1.5	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4	PF00037.27	gi|564288464|ref|YP_008874668.1|	-	0.035	13.9	1.3	2.3	8.2	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DEAD	PF00270.29	gi|564288465|ref|YP_008874669.1|	-	4.3e-23	82.0	0.0	7.3e-23	81.2	0.0	1.3	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|564288465|ref|YP_008874669.1|	-	4.2e-07	30.3	0.0	7.3e-06	26.3	0.0	2.6	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|564288465|ref|YP_008874669.1|	-	0.0001	22.9	1.8	0.00022	21.8	0.1	2.6	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|564288465|ref|YP_008874669.1|	-	0.0033	17.2	0.1	0.011	15.6	0.1	1.9	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
CGI-121	PF08617.10	gi|564288466|ref|YP_008874670.1|	-	8.5e-10	39.0	0.0	9.6e-10	38.8	0.0	1.0	1	0	0	1	1	1	1	Kinase	binding	protein	CGI-121
MipA	PF06629.12	gi|564288466|ref|YP_008874670.1|	-	0.00057	20.2	0.0	0.00069	19.9	0.0	1.1	1	0	0	1	1	1	1	MltA-interacting	protein	MipA
ParB_C	PF18064.1	gi|564288467|ref|YP_008874671.1|	-	0.13	12.4	0.1	0.13	12.4	0.1	2.0	2	0	0	2	2	2	0	Centromere-binding	protein	ParB	C-terminal
Oxidored_FMN	PF00724.20	gi|564288468|ref|YP_008874672.1|	-	1.6e-28	100.0	0.0	1.1e-26	94.0	0.0	2.1	2	0	0	2	2	2	2	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Auto_anti-p27	PF06677.12	gi|564288468|ref|YP_008874672.1|	-	0.02	15.0	0.4	0.04	14.1	0.4	1.5	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Dus	PF01207.17	gi|564288468|ref|YP_008874672.1|	-	0.14	11.2	0.0	0.23	10.5	0.0	1.3	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
Abhydrolase_6	PF12697.7	gi|564288469|ref|YP_008874673.1|	-	5.2e-28	99.1	6.8	6.1e-28	98.9	6.8	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|564288469|ref|YP_008874673.1|	-	3.7e-20	72.7	0.1	6.4e-14	52.2	0.1	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564288469|ref|YP_008874673.1|	-	1.5e-14	53.8	0.1	2.4e-13	49.9	0.1	2.5	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_2	PF02230.16	gi|564288469|ref|YP_008874673.1|	-	0.0038	17.0	0.0	1.6	8.5	0.0	3.0	3	0	0	3	3	3	1	Phospholipase/Carboxylesterase
Thioesterase	PF00975.20	gi|564288469|ref|YP_008874673.1|	-	0.0099	16.0	0.0	0.012	15.8	0.0	1.2	1	0	0	1	1	1	1	Thioesterase	domain
Abhydrolase_4	PF08386.10	gi|564288469|ref|YP_008874673.1|	-	0.022	14.9	0.0	0.045	13.9	0.0	1.5	1	0	0	1	1	1	0	TAP-like	protein
Abhydrolase_5	PF12695.7	gi|564288469|ref|YP_008874673.1|	-	0.094	12.5	0.0	0.65	9.8	0.0	1.9	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
FSH1	PF03959.13	gi|564288469|ref|YP_008874673.1|	-	0.19	11.3	0.0	0.32	10.6	0.0	1.3	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
MaoC_dehydratas	PF01575.19	gi|564288470|ref|YP_008874674.1|	-	1.9e-24	85.6	0.0	3.3e-24	84.8	0.0	1.3	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564288470|ref|YP_008874674.1|	-	1.5e-12	47.8	0.0	6.3e-12	45.8	0.0	2.0	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.22	gi|564288470|ref|YP_008874674.1|	-	0.0076	16.6	0.0	0.016	15.6	0.0	1.7	1	0	0	1	1	1	1	Thioesterase	superfamily
AbrB-like	PF14250.6	gi|564288471|ref|YP_008874675.1|	-	0.028	14.5	0.0	0.04	14.0	0.0	1.3	1	1	0	1	1	1	0	AbrB-like	transcriptional	regulator
MazE_antitoxin	PF04014.18	gi|564288471|ref|YP_008874675.1|	-	0.044	13.7	0.8	0.11	12.4	0.8	1.7	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
FlxA	PF14282.6	gi|564288472|ref|YP_008874676.1|	-	0.0002	21.3	4.0	0.0002	21.3	4.0	2.4	2	1	0	2	2	2	1	FlxA-like	protein
CdvA	PF18822.1	gi|564288472|ref|YP_008874676.1|	-	0.00042	20.1	10.5	0.035	13.9	0.1	2.7	2	1	1	3	3	3	2	CdvA-like	coiled-coil	domain
Filament	PF00038.21	gi|564288472|ref|YP_008874676.1|	-	0.00043	20.0	19.5	0.00054	19.6	19.5	1.0	1	0	0	1	1	1	1	Intermediate	filament	protein
Apolipoprotein	PF01442.18	gi|564288472|ref|YP_008874676.1|	-	0.0005	20.0	20.8	0.0038	17.1	4.9	2.3	1	1	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
NPV_P10	PF05531.12	gi|564288472|ref|YP_008874676.1|	-	0.0023	18.4	13.3	0.012	16.1	5.4	3.4	1	1	0	2	2	2	1	Nucleopolyhedrovirus	P10	protein
Erp_C	PF06780.11	gi|564288472|ref|YP_008874676.1|	-	0.0028	17.7	3.8	0.0056	16.7	3.6	1.7	1	1	0	1	1	1	1	Erp	protein	C-terminus
Spc7	PF08317.11	gi|564288472|ref|YP_008874676.1|	-	0.0032	16.4	11.7	0.0032	16.4	11.7	2.0	1	1	0	1	1	1	1	Spc7	kinetochore	protein
Phage_GP20	PF06810.11	gi|564288472|ref|YP_008874676.1|	-	0.0038	17.0	6.2	0.0038	17.0	6.2	2.5	1	1	1	2	2	2	1	Phage	minor	structural	protein	GP20
Prominin	PF05478.11	gi|564288472|ref|YP_008874676.1|	-	0.0058	14.7	7.6	0.0089	14.0	7.6	1.3	1	0	0	1	1	1	1	Prominin
ApoLp-III	PF07464.11	gi|564288472|ref|YP_008874676.1|	-	0.0084	16.2	11.1	0.0084	16.2	11.1	2.5	1	1	2	3	3	3	1	Apolipophorin-III	precursor	(apoLp-III)
Cauli_AT	PF03233.13	gi|564288472|ref|YP_008874676.1|	-	0.01	15.8	1.2	0.01	15.8	1.2	1.8	1	1	1	2	2	2	0	Aphid	transmission	protein
Baculo_PEP_C	PF04513.12	gi|564288472|ref|YP_008874676.1|	-	0.011	15.8	8.8	0.91	9.6	1.2	2.8	1	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
UPF0242	PF06785.11	gi|564288472|ref|YP_008874676.1|	-	0.014	15.6	12.3	0.014	15.6	12.3	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
YtxH	PF12732.7	gi|564288472|ref|YP_008874676.1|	-	0.016	15.7	11.5	5.9	7.5	7.4	3.4	1	1	1	2	2	2	0	YtxH-like	protein
P35	PF02331.15	gi|564288472|ref|YP_008874676.1|	-	0.022	14.1	0.0	0.03	13.7	0.0	1.2	1	0	0	1	1	1	0	Apoptosis	preventing	protein
DUF148	PF02520.17	gi|564288472|ref|YP_008874676.1|	-	0.025	14.7	16.0	0.057	13.5	0.1	3.0	1	1	2	3	3	3	0	Domain	of	unknown	function	DUF148
pP_pnuc_1	PF18165.1	gi|564288472|ref|YP_008874676.1|	-	0.029	14.2	2.1	0.053	13.4	0.9	2.0	1	1	1	2	2	2	0	Predicted	pPIWI-associating	nuclease
DASH_Duo1	PF08651.10	gi|564288472|ref|YP_008874676.1|	-	0.046	13.5	4.6	1.9	8.3	0.2	3.5	2	1	0	3	3	3	0	DASH	complex	subunit	Duo1
WXG100	PF06013.12	gi|564288472|ref|YP_008874676.1|	-	0.05	13.9	15.8	0.79	10.0	1.8	4.2	1	1	3	4	4	4	0	Proteins	of	100	residues	with	WXG
DUF883	PF05957.13	gi|564288472|ref|YP_008874676.1|	-	0.095	13.3	10.8	0.56	10.8	6.0	2.7	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF3584	PF12128.8	gi|564288472|ref|YP_008874676.1|	-	0.097	10.2	15.7	0.13	9.7	15.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Nmad5	PF18757.1	gi|564288472|ref|YP_008874676.1|	-	0.13	12.4	7.1	0.13	12.5	6.2	1.5	1	1	0	1	1	1	0	Nucleotide	modification	associated	domain	5
DUF1664	PF07889.12	gi|564288472|ref|YP_008874676.1|	-	0.13	12.3	14.6	3.7	7.6	8.4	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF885	PF05960.11	gi|564288472|ref|YP_008874676.1|	-	0.17	11.5	10.5	0.25	10.9	10.5	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
ApoO	PF09769.9	gi|564288472|ref|YP_008874676.1|	-	0.23	11.4	7.3	2.4	8.1	0.7	3.0	1	1	0	2	2	2	0	Apolipoprotein	O
Sec8_exocyst	PF04048.14	gi|564288472|ref|YP_008874676.1|	-	0.24	11.3	7.6	0.053	13.4	1.6	2.4	1	1	2	3	3	3	0	Sec8	exocyst	complex	component	specific	domain
Mod_r	PF07200.13	gi|564288472|ref|YP_008874676.1|	-	0.31	11.1	15.0	0.059	13.5	6.3	2.6	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
FlaC_arch	PF05377.11	gi|564288472|ref|YP_008874676.1|	-	0.58	10.6	17.7	1.8	9.0	4.2	4.2	3	1	1	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
TMEM173	PF15009.6	gi|564288472|ref|YP_008874676.1|	-	0.65	9.1	4.6	8.3	5.5	0.2	2.1	2	0	0	2	2	2	0	Transmembrane	protein	173
Cytochrom_C_2	PF01322.20	gi|564288472|ref|YP_008874676.1|	-	0.67	10.9	10.2	0.24	12.3	5.6	2.2	2	1	0	2	2	2	0	Cytochrome	C'
Fib_alpha	PF08702.10	gi|564288472|ref|YP_008874676.1|	-	0.82	9.9	12.6	1.3	9.2	5.1	2.8	1	1	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
RmuC	PF02646.16	gi|564288472|ref|YP_008874676.1|	-	0.84	8.7	14.1	0.65	9.1	5.6	2.8	1	1	1	3	3	3	0	RmuC	family
Acetyltransf_14	PF03421.16	gi|564288472|ref|YP_008874676.1|	-	0.88	9.6	7.8	1.5	8.9	2.1	2.1	1	1	1	2	2	2	0	YopJ	Serine/Threonine	acetyltransferase
Muted	PF14942.6	gi|564288472|ref|YP_008874676.1|	-	0.92	9.8	17.0	3	8.2	3.2	2.1	1	1	1	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Exonuc_VII_L	PF02601.15	gi|564288472|ref|YP_008874676.1|	-	0.92	9.0	8.7	2.3	7.7	8.7	1.5	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
ISG65-75	PF11727.8	gi|564288472|ref|YP_008874676.1|	-	0.94	8.7	8.5	1.1	8.5	7.8	1.5	1	1	0	1	1	1	0	Invariant	surface	glycoprotein
DUF948	PF06103.11	gi|564288472|ref|YP_008874676.1|	-	0.95	9.8	12.8	29	5.0	9.2	3.3	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Allexi_40kDa	PF05549.11	gi|564288472|ref|YP_008874676.1|	-	0.98	8.9	5.6	1.7	8.1	0.3	2.1	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
T2SSF	PF00482.23	gi|564288472|ref|YP_008874676.1|	-	1.3	8.9	4.9	4.1	7.4	4.2	2.1	1	1	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	F
DUF2452	PF10504.9	gi|564288472|ref|YP_008874676.1|	-	1.4	8.4	8.3	0.63	9.5	5.5	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2452)
Mce4_CUP1	PF11887.8	gi|564288472|ref|YP_008874676.1|	-	1.5	8.2	5.8	8.2	5.8	0.1	2.8	1	1	2	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Tweety	PF04906.13	gi|564288472|ref|YP_008874676.1|	-	1.6	7.3	6.6	3.2	6.3	0.2	2.4	1	1	1	2	2	2	0	Tweety
AAA_23	PF13476.6	gi|564288472|ref|YP_008874676.1|	-	1.8	9.1	11.0	2.8	8.4	11.0	1.3	1	1	0	1	1	1	0	AAA	domain
Syntaxin-6_N	PF09177.11	gi|564288472|ref|YP_008874676.1|	-	1.9	9.1	11.3	3e+02	2.1	11.0	2.8	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
FUSC	PF04632.12	gi|564288472|ref|YP_008874676.1|	-	2	6.8	7.8	2.7	6.4	7.8	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
AAA_32	PF13654.6	gi|564288472|ref|YP_008874676.1|	-	2.4	6.9	18.0	3	6.5	4.8	2.0	1	1	1	2	2	2	0	AAA	domain
UPF0184	PF03670.13	gi|564288472|ref|YP_008874676.1|	-	2.6	8.5	9.0	8.9	6.8	5.6	2.3	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
Spectrin	PF00435.21	gi|564288472|ref|YP_008874676.1|	-	3	8.4	14.0	2.8	8.5	9.2	2.6	1	1	1	2	2	2	0	Spectrin	repeat
GCIP	PF13324.6	gi|564288472|ref|YP_008874676.1|	-	3	7.4	13.6	4.1	6.9	13.5	1.4	1	1	0	1	1	1	0	Grap2	and	cyclin-D-interacting
Remorin_C	PF03763.13	gi|564288472|ref|YP_008874676.1|	-	3.8	7.4	9.9	0.93	9.4	5.6	2.1	1	1	1	2	2	2	0	Remorin,	C-terminal	region
Laminin_II	PF06009.12	gi|564288472|ref|YP_008874676.1|	-	3.9	7.5	13.0	2.3	8.2	6.3	2.9	1	1	1	2	2	2	0	Laminin	Domain	II
DUF2524	PF10732.9	gi|564288472|ref|YP_008874676.1|	-	4	7.8	17.0	0.35	11.2	9.7	2.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2524)
SKA2	PF16740.5	gi|564288472|ref|YP_008874676.1|	-	4.6	7.1	15.7	0.99	9.2	4.3	3.3	1	1	3	4	4	4	0	Spindle	and	kinetochore-associated	protein	2
DUF16	PF01519.16	gi|564288472|ref|YP_008874676.1|	-	5.6	7.5	19.2	20	5.8	2.3	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
CHDCT2	PF08074.11	gi|564288472|ref|YP_008874676.1|	-	5.8	7.1	9.3	13	6.0	1.5	2.1	1	1	1	2	2	2	0	CHDCT2	(NUC038)	domain
TPR_MLP1_2	PF07926.12	gi|564288472|ref|YP_008874676.1|	-	6.6	6.8	22.2	0.31	11.1	12.4	2.5	1	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
MtrG	PF04210.13	gi|564288472|ref|YP_008874676.1|	-	7.6	6.5	7.2	1.2	9.1	2.3	2.2	2	1	1	3	3	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Sas10_Utp3	PF04000.15	gi|564288472|ref|YP_008874676.1|	-	7.8	7.2	8.8	66	4.2	4.1	3.3	2	1	0	2	2	2	0	Sas10/Utp3/C1D	family
Snapin_Pallidin	PF14712.6	gi|564288472|ref|YP_008874676.1|	-	8.2	6.9	11.9	21	5.6	3.2	3.2	1	1	2	3	3	3	0	Snapin/Pallidin
BST2	PF16716.5	gi|564288472|ref|YP_008874676.1|	-	9.5	6.9	14.8	0.44	11.1	6.6	2.3	1	1	0	2	2	2	0	Bone	marrow	stromal	antigen	2
PHA_synth_III_E	PF09712.10	gi|564288473|ref|YP_008874677.1|	-	7.5e-15	54.8	12.0	1.4e-13	50.7	2.2	2.1	1	1	1	2	2	2	2	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
Phasin	PF05597.11	gi|564288473|ref|YP_008874677.1|	-	4.7e-06	26.6	0.7	4.7e-06	26.6	0.7	2.4	1	1	1	2	2	2	1	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Phasin_2	PF09361.10	gi|564288473|ref|YP_008874677.1|	-	0.0036	17.5	11.4	0.31	11.3	1.0	3.2	2	1	0	2	2	2	2	Phasin	protein
FliD_C	PF07195.12	gi|564288473|ref|YP_008874677.1|	-	0.013	15.0	1.4	0.065	12.7	1.4	2.0	1	1	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TPALS	PF18178.1	gi|564288473|ref|YP_008874677.1|	-	0.024	14.1	0.6	0.061	12.7	0.0	1.8	2	0	0	2	2	2	0	TIR-	and	PNP-associating	SLOG	family
BMFP	PF04380.13	gi|564288473|ref|YP_008874677.1|	-	0.036	14.5	3.6	0.036	14.5	3.6	2.7	3	0	0	3	3	3	0	Membrane	fusogenic	activity
dCache_1	PF02743.18	gi|564288473|ref|YP_008874677.1|	-	0.053	13.3	0.5	0.089	12.6	0.3	1.4	1	1	0	1	1	1	0	Cache	domain
IL34	PF15036.6	gi|564288473|ref|YP_008874677.1|	-	0.091	12.8	0.1	14	5.7	0.2	2.3	1	1	0	2	2	2	0	Interleukin	34
Lant_dehydr_C	PF14028.6	gi|564288473|ref|YP_008874677.1|	-	0.11	12.0	7.3	1.5	8.3	7.3	2.0	1	1	0	1	1	1	0	Lantibiotic	biosynthesis	dehydratase	C-term
DUF29	PF01724.16	gi|564288473|ref|YP_008874677.1|	-	0.18	12.0	7.1	1.8	8.8	0.5	2.6	2	1	0	2	2	2	0	Domain	of	unknown	function	DUF29
HK97-gp10_like	PF04883.12	gi|564288473|ref|YP_008874677.1|	-	0.2	12.7	1.0	11	7.1	0.1	2.5	2	1	0	2	2	2	0	Bacteriophage	HK97-gp10,	putative	tail-component
Tape_meas_lam_C	PF09718.10	gi|564288473|ref|YP_008874677.1|	-	0.21	11.7	14.7	1.2	9.3	1.6	3.2	3	0	0	3	3	3	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
Sulfotransfer_4	PF17784.1	gi|564288473|ref|YP_008874677.1|	-	0.31	10.8	3.6	3.6	7.4	1.0	2.4	1	1	1	2	2	2	0	Sulfotransferase	domain
Uds1	PF15456.6	gi|564288473|ref|YP_008874677.1|	-	0.38	10.9	5.2	0.26	11.5	2.5	2.1	1	1	0	1	1	1	0	Up-regulated	During	Septation
RNase_J_C	PF17770.1	gi|564288473|ref|YP_008874677.1|	-	0.52	11.4	2.6	21	6.3	0.3	3.0	3	1	0	3	3	3	0	Ribonuclease	J	C-terminal	domain
PilJ	PF13675.6	gi|564288473|ref|YP_008874677.1|	-	1.7	8.7	6.7	0.52	10.4	0.8	2.4	2	1	0	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF948	PF06103.11	gi|564288473|ref|YP_008874677.1|	-	2.6	8.4	6.5	12	6.3	0.8	3.0	2	2	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Snapin_Pallidin	PF14712.6	gi|564288473|ref|YP_008874677.1|	-	4.4	7.8	7.4	3	8.3	0.8	3.0	2	2	1	3	3	3	0	Snapin/Pallidin
REV1_C	PF16727.5	gi|564288473|ref|YP_008874677.1|	-	5.5	7.5	10.3	12	6.3	0.5	3.9	2	1	2	4	4	4	0	DNA	repair	protein	REV1	C-terminal	domain
ZapB	PF06005.12	gi|564288473|ref|YP_008874677.1|	-	8.1	7.0	11.1	1.2	9.7	5.3	2.3	2	1	0	2	2	2	0	Cell	division	protein	ZapB
Abhydrolase_1	PF00561.20	gi|564288474|ref|YP_008874678.1|	-	1.8e-18	67.1	0.0	4.8e-18	65.7	0.0	1.6	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
HHH_5	PF14520.6	gi|564288474|ref|YP_008874678.1|	-	3.4e-11	43.6	0.0	6.7e-11	42.6	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF3141	PF11339.8	gi|564288474|ref|YP_008874678.1|	-	1.7e-08	33.4	0.0	2.8e-06	26.1	0.1	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3141)
PhaC_N	PF07167.13	gi|564288474|ref|YP_008874678.1|	-	1.8e-08	34.2	0.0	3.4e-08	33.3	0.0	1.4	1	0	0	1	1	1	1	Poly-beta-hydroxybutyrate	polymerase	(PhaC)	N-terminus
Hydrolase_4	PF12146.8	gi|564288474|ref|YP_008874678.1|	-	3.7e-08	32.9	0.0	0.00079	18.8	0.0	2.5	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
DLH	PF01738.18	gi|564288474|ref|YP_008874678.1|	-	3.5e-06	26.7	0.0	0.0023	17.5	0.0	2.7	2	1	0	2	2	2	2	Dienelactone	hydrolase	family
PHB_depo_C	PF06850.11	gi|564288474|ref|YP_008874678.1|	-	2.1e-05	24.0	0.0	4.1e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	PHB	de-polymerase	C-terminus
DUF4332	PF14229.6	gi|564288474|ref|YP_008874678.1|	-	0.00026	21.2	0.0	0.00082	19.6	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4332)
DNA_pol_lambd_f	PF10391.9	gi|564288474|ref|YP_008874678.1|	-	0.0004	20.2	0.0	0.0015	18.3	0.0	2.0	1	1	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
FSH1	PF03959.13	gi|564288474|ref|YP_008874678.1|	-	0.00073	19.3	0.0	0.066	12.9	0.0	2.2	2	0	0	2	2	2	1	Serine	hydrolase	(FSH1)
Cdd1	PF11731.8	gi|564288474|ref|YP_008874678.1|	-	0.00075	19.7	0.0	0.0022	18.2	0.0	1.8	1	0	0	1	1	1	1	Pathogenicity	locus
TfoX_C	PF04994.13	gi|564288474|ref|YP_008874678.1|	-	0.065	13.3	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	TfoX	C-terminal	domain
Abhydrolase_5	PF12695.7	gi|564288474|ref|YP_008874678.1|	-	0.11	12.3	0.0	3.6	7.3	0.0	2.4	2	1	0	2	2	2	0	Alpha/beta	hydrolase	family
LDcluster4	PF18306.1	gi|564288475|ref|YP_008874679.1|	-	4.4e-36	123.8	5.1	4.6e-36	123.8	5.1	1.0	1	0	0	1	1	1	1	SLOG	cluster4	family
Lysine_decarbox	PF03641.14	gi|564288475|ref|YP_008874679.1|	-	8.5e-08	32.4	0.8	1.1e-07	32.0	0.2	1.4	2	0	0	2	2	2	1	Possible	lysine	decarboxylase
DNA_processg_A	PF02481.15	gi|564288475|ref|YP_008874679.1|	-	3.4e-05	23.2	2.0	0.00045	19.5	0.7	2.0	1	1	1	2	2	2	2	DNA	recombination-mediator	protein	A
Nuc_deoxyrib_tr	PF05014.15	gi|564288475|ref|YP_008874679.1|	-	0.0084	16.1	0.1	0.013	15.5	0.1	1.4	1	1	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
Cpn60_TCP1	PF00118.24	gi|564288477|ref|YP_008874681.1|	-	6e-175	582.6	18.1	7e-175	582.3	18.1	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Nitro_FeMo-Co	PF02579.17	gi|564288477|ref|YP_008874681.1|	-	0.051	13.9	0.4	0.35	11.2	0.0	2.5	2	0	0	2	2	2	0	Dinitrogenase	iron-molybdenum	cofactor
CoA_binding_2	PF13380.6	gi|564288477|ref|YP_008874681.1|	-	0.1	13.1	0.5	0.75	10.3	0.0	2.4	2	0	0	2	2	2	0	CoA	binding	domain
SCAB_CC	PF16712.5	gi|564288477|ref|YP_008874681.1|	-	2.4	8.0	9.3	0.27	11.0	0.7	2.8	3	0	0	3	3	3	0	Coiled-coil	regions	of	plant-specific	actin-binding	protein
AAA_22	PF13401.6	gi|564288478|ref|YP_008874682.1|	-	3.1e-08	34.0	0.0	1e-07	32.3	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|564288478|ref|YP_008874682.1|	-	0.0023	18.4	0.0	0.072	13.5	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|564288478|ref|YP_008874682.1|	-	0.0047	17.3	0.6	0.019	15.3	0.1	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
NAD_binding_10	PF13460.6	gi|564288482|ref|YP_008874686.1|	-	3.6e-19	69.4	0.2	6.5e-19	68.5	0.2	1.5	1	1	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|564288482|ref|YP_008874686.1|	-	8.1e-16	58.3	0.0	1.2e-15	57.8	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
Epimerase	PF01370.21	gi|564288482|ref|YP_008874686.1|	-	2.2e-11	43.7	0.1	6.1e-11	42.2	0.0	1.7	2	0	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564288482|ref|YP_008874686.1|	-	3.2e-05	23.5	0.0	4.5e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|564288482|ref|YP_008874686.1|	-	6.1e-05	22.2	0.0	9.7e-05	21.5	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|564288482|ref|YP_008874686.1|	-	0.003	16.8	0.0	0.005	16.0	0.0	1.3	1	0	0	1	1	1	1	Male	sterility	protein
Glyco_trans_4_4	PF13579.6	gi|564288482|ref|YP_008874686.1|	-	0.011	16.2	4.5	0.052	14.0	4.5	2.1	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
RmlD_sub_bind	PF04321.17	gi|564288482|ref|YP_008874686.1|	-	0.019	14.1	0.0	0.16	11.0	0.0	2.1	2	0	0	2	2	2	0	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|564288483|ref|YP_008874687.1|	-	2e-66	224.7	0.0	2.4e-66	224.4	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Epimerase	PF01370.21	gi|564288483|ref|YP_008874687.1|	-	1.8e-64	217.5	0.0	2.2e-64	217.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|564288483|ref|YP_008874687.1|	-	2.9e-27	95.4	0.0	3.7e-27	95.0	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|564288483|ref|YP_008874687.1|	-	1e-18	67.5	0.1	1.3e-18	67.2	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|564288483|ref|YP_008874687.1|	-	4.7e-18	65.3	0.0	2.7e-17	62.9	0.0	1.8	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|564288483|ref|YP_008874687.1|	-	9.9e-12	45.1	0.0	6.2e-11	42.5	0.0	2.0	1	1	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|564288483|ref|YP_008874687.1|	-	8.5e-10	38.2	0.0	2.3e-09	36.8	0.0	1.8	1	1	0	1	1	1	1	Male	sterility	protein
NmrA	PF05368.13	gi|564288483|ref|YP_008874687.1|	-	1.2e-07	31.6	0.0	1.6e-07	31.1	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
KR	PF08659.10	gi|564288483|ref|YP_008874687.1|	-	3.4e-07	30.4	0.0	1.7e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	KR	domain
adh_short	PF00106.25	gi|564288483|ref|YP_008874687.1|	-	8.8e-05	22.0	1.1	0.0014	18.1	0.1	2.9	3	1	0	3	3	3	1	short	chain	dehydrogenase
UDPG_MGDP_dh_N	PF03721.14	gi|564288483|ref|YP_008874687.1|	-	0.049	13.2	0.2	0.17	11.4	0.0	1.9	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|564288483|ref|YP_008874687.1|	-	0.066	13.1	0.1	0.14	12.0	0.0	1.5	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
CPBP	PF02517.16	gi|564291274|ref|YP_008874689.1|	-	3.6e-14	52.9	1.5	3.6e-14	52.9	1.5	2.9	2	2	1	3	3	3	2	CPBP	intramembrane	metalloprotease
HTH_20	PF12840.7	gi|564288485|ref|YP_008874690.1|	-	4.2e-09	36.3	1.1	6.1e-09	35.8	1.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288485|ref|YP_008874690.1|	-	2e-07	30.8	0.0	3.5e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564288485|ref|YP_008874690.1|	-	1.7e-06	27.8	0.0	2.5e-06	27.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|564288485|ref|YP_008874690.1|	-	0.00015	21.5	0.0	0.00024	20.8	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288485|ref|YP_008874690.1|	-	0.0002	20.9	0.0	0.00028	20.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564288485|ref|YP_008874690.1|	-	0.00032	20.5	0.0	0.00045	20.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|564288485|ref|YP_008874690.1|	-	0.00049	19.9	0.1	0.0011	18.8	0.1	1.7	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|564288485|ref|YP_008874690.1|	-	0.00075	19.4	0.0	0.0012	18.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|564288485|ref|YP_008874690.1|	-	0.0011	18.9	0.0	0.0019	18.2	0.0	1.4	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_Tnp_ISL3	PF13542.6	gi|564288485|ref|YP_008874690.1|	-	0.0012	18.2	0.0	0.0034	16.8	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_36	PF13730.6	gi|564288485|ref|YP_008874690.1|	-	0.0094	15.9	0.0	0.014	15.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288485|ref|YP_008874690.1|	-	0.011	16.2	0.0	0.017	15.6	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|564288485|ref|YP_008874690.1|	-	0.03	14.3	0.0	0.049	13.6	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
DprA_WH	PF17782.1	gi|564288485|ref|YP_008874690.1|	-	0.044	13.9	1.2	0.069	13.3	1.2	1.3	1	0	0	1	1	1	0	DprA	winged	helix	domain
HxlR	PF01638.17	gi|564288485|ref|YP_008874690.1|	-	0.085	12.7	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
Dimerisation	PF08100.11	gi|564288485|ref|YP_008874690.1|	-	0.16	12.0	0.0	0.25	11.4	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
HTH_DeoR	PF08220.12	gi|564288485|ref|YP_008874690.1|	-	0.17	11.6	0.0	0.27	11.0	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
E1-E2_ATPase	PF00122.20	gi|564288486|ref|YP_008874691.1|	-	0.0059	16.1	1.6	0.0077	15.8	1.6	1.1	1	0	0	1	1	1	1	E1-E2	ATPase
PetG	PF02529.15	gi|564288487|ref|YP_008874692.1|	-	0.039	13.8	4.2	0.18	11.7	0.0	2.5	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	subunit	5
DUF2892	PF11127.8	gi|564288487|ref|YP_008874692.1|	-	0.36	10.9	16.9	0.064	13.3	2.5	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2892)
CSD	PF00313.22	gi|564288488|ref|YP_008874693.1|	-	2.9e-19	68.7	0.3	3.2e-19	68.5	0.3	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
S1-like	PF14444.6	gi|564288488|ref|YP_008874693.1|	-	0.02	14.8	0.3	0.029	14.3	0.2	1.3	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|564288488|ref|YP_008874693.1|	-	0.053	13.2	2.3	0.081	12.6	2.3	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
Rho_RNA_bind	PF07497.12	gi|564288488|ref|YP_008874693.1|	-	0.067	13.1	0.0	0.079	12.8	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
Helicase_C_2	PF13307.6	gi|564288489|ref|YP_008874694.1|	-	4.4e-22	79.1	0.0	8.8e-22	78.1	0.0	1.5	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|564288489|ref|YP_008874694.1|	-	1.1e-05	25.1	0.0	1.9e-05	24.4	0.0	1.3	1	0	0	1	1	1	1	DEAD_2
ResIII	PF04851.15	gi|564288489|ref|YP_008874694.1|	-	1.8e-05	24.8	0.0	0.016	15.2	0.0	2.5	3	0	0	3	3	3	2	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|564288489|ref|YP_008874694.1|	-	4.2e-05	23.4	1.2	0.014	15.1	0.0	2.5	3	0	0	3	3	3	2	AAA	domain
DEAD	PF00270.29	gi|564288489|ref|YP_008874694.1|	-	0.00013	21.8	0.0	0.074	12.8	0.0	2.5	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_22	PF13401.6	gi|564288489|ref|YP_008874694.1|	-	0.00022	21.5	0.0	0.0021	18.3	0.0	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564288489|ref|YP_008874694.1|	-	0.0028	18.1	0.2	0.0092	16.4	0.1	2.0	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_19	PF13245.6	gi|564288489|ref|YP_008874694.1|	-	0.0075	16.6	0.0	0.017	15.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.27	gi|564288489|ref|YP_008874694.1|	-	0.028	14.9	0.0	0.6	10.6	0.0	2.9	4	0	0	4	4	4	0	ABC	transporter
PhoH	PF02562.16	gi|564288489|ref|YP_008874694.1|	-	0.059	12.8	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
DXP_redisom_C	PF08436.12	gi|564288489|ref|YP_008874694.1|	-	0.11	12.7	0.0	0.22	11.7	0.0	1.4	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase	C-terminal	domain
AAA	PF00004.29	gi|564288489|ref|YP_008874694.1|	-	0.16	12.4	0.0	3.2	8.2	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Dr_adhesin	PF12393.8	gi|564291275|ref|YP_008874695.1|	-	0.051	13.9	0.1	0.062	13.6	0.1	1.2	1	0	0	1	1	1	0	Dr	family	adhesin
Met_10	PF02475.16	gi|564288490|ref|YP_008874696.1|	-	2.3e-49	167.8	0.0	9.8e-49	165.8	0.0	1.9	1	1	0	1	1	1	1	Met-10+	like-protein
Methyltransf_25	PF13649.6	gi|564288490|ref|YP_008874696.1|	-	6.2e-06	26.8	0.0	2.2e-05	25.1	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|564288490|ref|YP_008874696.1|	-	4.6e-05	23.1	0.0	8.7e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|564288490|ref|YP_008874696.1|	-	4.7e-05	23.0	0.0	0.00019	21.0	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	small	domain
Cons_hypoth95	PF03602.15	gi|564288490|ref|YP_008874696.1|	-	0.00017	21.3	0.0	0.00032	20.4	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_23	PF13489.6	gi|564288490|ref|YP_008874696.1|	-	0.0002	21.3	0.0	0.00055	19.8	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|564288490|ref|YP_008874696.1|	-	0.00092	20.2	0.9	0.0051	17.8	0.1	2.5	2	2	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288490|ref|YP_008874696.1|	-	0.018	15.7	0.0	0.047	14.3	0.0	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
SAM_MT	PF04445.13	gi|564288490|ref|YP_008874696.1|	-	0.043	13.2	0.1	0.068	12.6	0.1	1.3	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
DNA_methylase	PF00145.17	gi|564288490|ref|YP_008874696.1|	-	0.048	13.0	0.0	0.075	12.4	0.0	1.2	1	0	0	1	1	1	0	C-5	cytosine-specific	DNA	methylase
RrnaAD	PF00398.20	gi|564288490|ref|YP_008874696.1|	-	0.058	12.4	0.0	0.1	11.7	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
tRNA_U5-meth_tr	PF05958.11	gi|564288490|ref|YP_008874696.1|	-	0.1	11.5	0.0	0.15	11.0	0.0	1.2	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_31	PF13847.6	gi|564288490|ref|YP_008874696.1|	-	0.13	12.0	0.0	0.31	10.8	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|564288490|ref|YP_008874696.1|	-	0.15	11.4	0.0	0.26	10.6	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
NMD3	PF04981.13	gi|564288491|ref|YP_008874697.1|	-	1.2e-63	214.8	0.0	1.4e-63	214.6	0.0	1.1	1	0	0	1	1	1	1	NMD3	family
Rpr2	PF04032.16	gi|564288491|ref|YP_008874697.1|	-	0.0012	19.1	1.1	0.13	12.6	0.0	3.0	2	1	1	3	3	3	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-ribbon_3	PF13248.6	gi|564288491|ref|YP_008874697.1|	-	0.058	12.8	4.6	10	5.7	0.1	3.6	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.7	gi|564288491|ref|YP_008874697.1|	-	0.072	13.1	5.9	2.7	8.1	3.4	3.1	2	1	0	2	2	2	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564288491|ref|YP_008874697.1|	-	0.092	12.5	9.7	0.19	11.5	0.3	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
FYVE	PF01363.21	gi|564288491|ref|YP_008874697.1|	-	0.098	12.8	3.4	1.6	8.9	0.7	2.5	3	0	0	3	3	3	0	FYVE	zinc	finger
eIF-5_eIF-2B	PF01873.17	gi|564288491|ref|YP_008874697.1|	-	0.26	11.1	2.5	0.31	10.9	0.5	2.0	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
GFA	PF04828.14	gi|564288491|ref|YP_008874697.1|	-	0.33	11.3	3.6	40	4.6	0.0	3.4	2	1	0	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf_UBZ	PF18439.1	gi|564288491|ref|YP_008874697.1|	-	0.98	9.1	13.3	0.46	10.1	0.2	3.8	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zf-NADH-PPase	PF09297.11	gi|564288491|ref|YP_008874697.1|	-	9.1	6.0	12.1	3	7.6	0.3	2.8	3	0	0	3	3	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
UPF0547	PF10571.9	gi|564288491|ref|YP_008874697.1|	-	9.6	6.4	7.2	8.3	6.6	0.2	3.1	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Epimerase	PF01370.21	gi|564288492|ref|YP_008874698.1|	-	3.4e-27	95.5	0.3	5.3e-26	91.6	0.3	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564288492|ref|YP_008874698.1|	-	2.4e-18	66.6	0.0	3.7e-16	59.4	0.0	2.5	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|564288492|ref|YP_008874698.1|	-	5.8e-13	48.6	0.1	1.7e-12	47.0	0.0	1.7	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|564288492|ref|YP_008874698.1|	-	4.2e-06	26.1	0.0	6.6e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	Male	sterility	protein
3Beta_HSD	PF01073.19	gi|564288492|ref|YP_008874698.1|	-	6.2e-06	25.4	0.0	8.7e-06	24.9	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|564288492|ref|YP_008874698.1|	-	0.00014	21.1	0.1	0.00041	19.6	0.1	1.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.25	gi|564288492|ref|YP_008874698.1|	-	0.022	14.2	0.0	0.44	10.0	0.0	2.5	2	1	0	2	2	2	0	short	chain	dehydrogenase
DHQ_synthase	PF01761.20	gi|564288492|ref|YP_008874698.1|	-	0.036	13.2	0.2	0.052	12.7	0.2	1.1	1	0	0	1	1	1	0	3-dehydroquinate	synthase
CshA_NR2	PF18651.1	gi|564288492|ref|YP_008874698.1|	-	0.067	12.4	0.0	0.099	11.8	0.0	1.2	1	0	0	1	1	1	0	Surface	adhesin	CshA	non-repetitive	domain	2
Peptidase_M48	PF01435.18	gi|564288493|ref|YP_008874699.1|	-	3.2e-43	147.8	0.0	5e-43	147.2	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|564288493|ref|YP_008874699.1|	-	1.1e-07	31.4	0.5	2.1e-06	27.1	0.0	2.1	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|564288493|ref|YP_008874699.1|	-	0.051	13.4	0.0	0.074	12.9	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
DUF1772	PF08592.11	gi|564288493|ref|YP_008874699.1|	-	0.16	12.3	0.0	0.16	12.3	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1772)
DUF2207	PF09972.9	gi|564288493|ref|YP_008874699.1|	-	0.77	8.5	9.0	1.9	7.1	1.4	2.4	2	1	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
Pox_E6	PF04656.12	gi|564288494|ref|YP_008874700.1|	-	0.082	11.4	0.1	0.1	11.1	0.1	1.1	1	0	0	1	1	1	0	Pox	virus	E6	protein
Rad51	PF08423.11	gi|564288495|ref|YP_008874701.1|	-	9.9e-75	251.1	0.4	9.4e-43	146.3	0.0	2.0	2	0	0	2	2	2	2	Rad51
HHH_5	PF14520.6	gi|564288495|ref|YP_008874701.1|	-	1.4e-11	44.8	0.1	1.2e-10	41.9	0.0	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
RecA	PF00154.21	gi|564288495|ref|YP_008874701.1|	-	5.9e-08	32.5	0.1	0.0051	16.3	0.0	2.1	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.6	gi|564288495|ref|YP_008874701.1|	-	6.6e-06	25.8	0.2	9.9e-06	25.3	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
HHH	PF00633.23	gi|564288495|ref|YP_008874701.1|	-	7.3e-06	25.6	1.6	0.0012	18.7	0.3	2.7	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_2	PF12826.7	gi|564288495|ref|YP_008874701.1|	-	0.00022	21.3	0.0	0.00059	19.9	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|564288495|ref|YP_008874701.1|	-	0.00083	19.5	0.0	0.0017	18.6	0.0	1.6	1	0	0	1	1	1	1	Pathogenicity	locus
ATPase	PF06745.13	gi|564288495|ref|YP_008874701.1|	-	0.0042	16.5	0.1	0.0095	15.3	0.0	1.6	2	0	0	2	2	2	1	KaiC
IMS_HHH	PF11798.8	gi|564288495|ref|YP_008874701.1|	-	0.008	16.4	0.0	0.03	14.6	0.0	2.0	2	0	0	2	2	2	1	IMS	family	HHH	motif
DNA_pol_lambd_f	PF10391.9	gi|564288495|ref|YP_008874701.1|	-	0.021	14.6	0.0	0.09	12.6	0.0	2.1	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
AAA_22	PF13401.6	gi|564288495|ref|YP_008874701.1|	-	0.027	14.8	0.1	0.07	13.4	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
HHH_3	PF12836.7	gi|564288495|ref|YP_008874701.1|	-	0.036	14.3	0.0	3.3	8.0	0.0	2.6	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
HHH_8	PF14716.6	gi|564288495|ref|YP_008874701.1|	-	0.051	14.0	0.1	0.42	11.0	0.0	2.4	2	0	0	2	2	2	0	Helix-hairpin-helix	domain
BAF	PF02961.14	gi|564288495|ref|YP_008874701.1|	-	0.15	12.6	0.0	0.42	11.1	0.0	1.7	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
Aldo_ket_red	PF00248.21	gi|564288496|ref|YP_008874702.1|	-	4.5e-48	163.9	0.0	5.2e-48	163.7	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHH_1	PF01402.21	gi|564288496|ref|YP_008874702.1|	-	0.22	11.5	3.4	0.4	10.7	0.1	2.9	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
CPBP	PF02517.16	gi|564288497|ref|YP_008874703.1|	-	1.1e-12	48.1	5.6	1.1e-12	48.1	5.6	2.3	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
Hexapep	PF00132.24	gi|564288498|ref|YP_008874704.1|	-	2.1e-06	27.2	2.8	0.017	14.8	0.0	3.3	3	0	0	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564288498|ref|YP_008874704.1|	-	0.00025	20.7	0.2	0.068	12.9	0.0	2.9	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
Nmad3	PF18754.1	gi|564288499|ref|YP_008874705.1|	-	4e-56	190.4	0.0	4.5e-56	190.2	0.0	1.0	1	0	0	1	1	1	1	Nucleotide	modification	associated	domain	3
ATPase	PF06745.13	gi|564288500|ref|YP_008874706.1|	-	2.8e-42	144.6	0.1	3.2e-42	144.4	0.1	1.0	1	0	0	1	1	1	1	KaiC
GvpD	PF07088.11	gi|564288500|ref|YP_008874706.1|	-	1.2e-06	27.4	0.1	1.1e-05	24.3	0.1	2.1	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_25	PF13481.6	gi|564288500|ref|YP_008874706.1|	-	1.8e-06	27.7	0.0	4.1e-06	26.5	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.15	gi|564288500|ref|YP_008874706.1|	-	6.3e-06	25.7	0.0	2.4e-05	23.8	0.0	1.8	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
MEDS	PF14417.6	gi|564288500|ref|YP_008874706.1|	-	6e-05	22.9	0.0	0.00021	21.2	0.0	1.8	2	1	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_19	PF13245.6	gi|564288500|ref|YP_008874706.1|	-	0.00025	21.4	0.0	0.00037	20.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
ATPase_2	PF01637.18	gi|564288500|ref|YP_008874706.1|	-	0.00026	21.0	0.0	0.00044	20.2	0.0	1.4	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|564288500|ref|YP_008874706.1|	-	0.00057	19.7	0.0	0.001	18.8	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|564288500|ref|YP_008874706.1|	-	0.00069	19.6	0.0	0.0016	18.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564288500|ref|YP_008874706.1|	-	0.00096	19.4	0.2	0.0018	18.6	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|564288500|ref|YP_008874706.1|	-	0.0014	18.4	0.0	0.002	17.9	0.0	1.4	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|564288500|ref|YP_008874706.1|	-	0.0015	18.8	0.0	0.0024	18.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
ATP_bind_1	PF03029.17	gi|564288500|ref|YP_008874706.1|	-	0.002	18.0	0.2	0.0038	17.0	0.2	1.5	1	1	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
RecA	PF00154.21	gi|564288500|ref|YP_008874706.1|	-	0.0031	17.0	0.1	0.0086	15.6	0.0	1.7	2	1	0	2	2	2	1	recA	bacterial	DNA	recombination	protein
AAA_33	PF13671.6	gi|564288500|ref|YP_008874706.1|	-	0.0041	17.3	0.2	0.01	16.0	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564288500|ref|YP_008874706.1|	-	0.0043	17.5	0.5	0.038	14.4	0.5	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad51	PF08423.11	gi|564288500|ref|YP_008874706.1|	-	0.0048	16.2	0.0	0.0063	15.8	0.0	1.3	1	1	0	1	1	1	1	Rad51
AAA_16	PF13191.6	gi|564288500|ref|YP_008874706.1|	-	0.0062	16.9	0.0	0.011	16.1	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564288500|ref|YP_008874706.1|	-	0.0067	16.2	0.0	0.0086	15.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
cobW	PF02492.19	gi|564288500|ref|YP_008874706.1|	-	0.018	14.6	0.1	0.069	12.7	0.0	1.9	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
T2SSE	PF00437.20	gi|564288500|ref|YP_008874706.1|	-	0.022	13.8	0.0	0.036	13.1	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RNA_helicase	PF00910.22	gi|564288500|ref|YP_008874706.1|	-	0.025	15.0	0.1	0.061	13.7	0.0	1.7	2	0	0	2	2	1	0	RNA	helicase
NACHT	PF05729.12	gi|564288500|ref|YP_008874706.1|	-	0.03	14.2	0.0	0.093	12.6	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_18	PF13238.6	gi|564288500|ref|YP_008874706.1|	-	0.031	14.8	0.2	0.078	13.5	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.18	gi|564288500|ref|YP_008874706.1|	-	0.042	13.6	0.0	0.079	12.7	0.0	1.5	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
DEAD	PF00270.29	gi|564288500|ref|YP_008874706.1|	-	0.043	13.6	0.1	0.063	13.0	0.1	1.5	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
DUF2075	PF09848.9	gi|564288500|ref|YP_008874706.1|	-	0.044	13.0	0.0	0.049	12.9	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.15	gi|564288500|ref|YP_008874706.1|	-	0.048	13.6	0.3	0.064	13.2	0.3	1.4	1	1	0	1	1	1	0	NTPase
AAA_11	PF13086.6	gi|564288500|ref|YP_008874706.1|	-	0.056	13.2	0.0	0.081	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.6	gi|564288500|ref|YP_008874706.1|	-	0.062	13.7	0.1	0.17	12.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
PAXNEB	PF05625.11	gi|564288500|ref|YP_008874706.1|	-	0.066	12.3	0.1	0.52	9.4	0.0	1.9	1	1	0	2	2	2	0	PAXNEB	protein
DAP3	PF10236.9	gi|564288500|ref|YP_008874706.1|	-	0.099	11.8	0.0	0.21	10.7	0.0	1.5	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
ABC_tran	PF00005.27	gi|564288500|ref|YP_008874706.1|	-	0.16	12.5	0.0	0.28	11.7	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
PHP	PF02811.19	gi|564288503|ref|YP_008874709.1|	-	9.2e-07	29.3	0.0	9.2e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	PHP	domain
PHP_C	PF13263.6	gi|564288503|ref|YP_008874709.1|	-	0.009	15.7	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	1	PHP-associated
Cupin_2	PF07883.11	gi|564288505|ref|YP_008874711.1|	-	6.6e-16	57.8	0.6	1e-15	57.2	0.6	1.3	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|564288505|ref|YP_008874711.1|	-	2.1e-06	27.7	0.1	3.1e-06	27.2	0.1	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
AraC_binding_2	PF14525.6	gi|564288505|ref|YP_008874711.1|	-	0.0085	15.8	0.1	0.0087	15.8	0.1	1.3	1	0	0	1	1	1	1	AraC-binding-like	domain
Zn-ribbon_8	PF09723.10	gi|564288505|ref|YP_008874711.1|	-	0.043	13.9	2.4	0.1	12.7	2.5	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF2072	PF09845.9	gi|564288505|ref|YP_008874711.1|	-	0.069	13.4	0.1	0.11	12.8	0.1	1.3	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
Cupin_3	PF05899.12	gi|564288505|ref|YP_008874711.1|	-	0.11	12.2	0.3	0.17	11.6	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
MannoseP_isomer	PF01050.18	gi|564288505|ref|YP_008874711.1|	-	0.15	11.9	0.0	0.2	11.5	0.0	1.2	1	0	0	1	1	1	0	Mannose-6-phosphate	isomerase
Rubredoxin_2	PF18073.1	gi|564288505|ref|YP_008874711.1|	-	1.2	8.9	3.8	15	5.4	0.6	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
zf-NADH-PPase	PF09297.11	gi|564288505|ref|YP_008874711.1|	-	9.8	5.9	8.2	7.4	6.3	0.9	3.4	4	0	0	4	4	4	0	NADH	pyrophosphatase	zinc	ribbon	domain
GATase	PF00117.28	gi|564288506|ref|YP_008874712.1|	-	1.3e-20	74.0	0.0	1.8e-20	73.5	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|564288506|ref|YP_008874712.1|	-	1.3e-06	28.3	0.1	1e-05	25.4	0.1	2.2	1	1	0	1	1	1	1	Peptidase	C26
Tricorn_C1	PF14684.6	gi|564288507|ref|YP_008874713.1|	-	0.028	14.5	0.0	0.031	14.4	0.0	1.1	1	0	0	1	1	1	0	Tricorn	protease	C1	domain
SeqA_N	PF17206.3	gi|564288507|ref|YP_008874713.1|	-	0.031	13.6	0.0	0.043	13.1	0.0	1.3	1	0	0	1	1	1	0	SeqA	protein	N-terminal	domain
DNA_pol_B_palm	PF14792.6	gi|564288507|ref|YP_008874713.1|	-	0.076	13.2	0.0	0.082	13.1	0.0	1.0	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
DUF5336	PF17270.2	gi|564288508|ref|YP_008874714.1|	-	0.037	13.6	0.9	0.039	13.6	0.9	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5336)
Peptidase_U4	PF03419.13	gi|564288508|ref|YP_008874714.1|	-	0.12	11.6	1.3	0.14	11.4	1.3	1.0	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
Aldo_ket_red	PF00248.21	gi|564288509|ref|YP_008874715.1|	-	7.9e-56	189.4	0.0	1.6e-53	181.9	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
GFO_IDH_MocA	PF01408.22	gi|564288510|ref|YP_008874716.1|	-	8.4e-17	62.1	0.0	1.4e-16	61.4	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DUF5642	PF18702.1	gi|564288510|ref|YP_008874716.1|	-	0.12	12.1	0.0	0.24	11.1	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5642)
Coat_F	PF07875.12	gi|564288511|ref|YP_008874717.1|	-	0.04	14.1	1.8	1.1	9.5	0.2	3.0	3	0	0	3	3	3	0	Coat	F	domain
zinc_ribbon_2	PF13240.6	gi|564288512|ref|YP_008874718.1|	-	4.4e-05	23.1	2.0	5.9e-05	22.6	2.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564288512|ref|YP_008874718.1|	-	7.5e-05	22.7	3.1	0.0001	22.2	3.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|564288512|ref|YP_008874718.1|	-	0.0026	18.5	0.6	0.0032	18.2	0.6	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
zf-ribbon_3	PF13248.6	gi|564288512|ref|YP_008874718.1|	-	0.0059	16.0	1.6	0.0086	15.5	1.6	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.18	gi|564288512|ref|YP_008874718.1|	-	0.017	14.5	0.8	0.023	14.0	0.8	1.2	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
SoxD	PF04267.12	gi|564288512|ref|YP_008874718.1|	-	0.057	13.5	0.1	0.081	13.0	0.1	1.3	1	0	0	1	1	1	0	Sarcosine	oxidase,	delta	subunit	family
DNA_RNApol_7kD	PF03604.13	gi|564288512|ref|YP_008874718.1|	-	0.084	12.6	0.7	0.37	10.5	0.0	2.0	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
OrfB_Zn_ribbon	PF07282.11	gi|564288512|ref|YP_008874718.1|	-	0.095	12.6	0.8	0.13	12.2	0.8	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF2866	PF11065.8	gi|564288513|ref|YP_008874719.1|	-	0.11	12.6	0.0	0.19	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2866)
NucS	PF01939.16	gi|564288514|ref|YP_008874720.1|	-	1.4e-67	227.4	0.0	1.6e-67	227.2	0.0	1.0	1	0	0	1	1	1	1	Endonuclease	NucS
YhcG_C	PF06250.11	gi|564288514|ref|YP_008874720.1|	-	0.025	14.4	0.0	0.043	13.6	0.0	1.3	1	0	0	1	1	1	0	YhcG	PDDEXK	nuclease	domain
HalOD1	PF18545.1	gi|564288515|ref|YP_008874721.1|	-	3.9e-21	75.1	2.7	4.7e-21	74.8	2.7	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
BAT	PF15915.5	gi|564288516|ref|YP_008874722.1|	-	8.2e-30	103.7	3.9	1.2e-29	103.2	3.9	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|564288516|ref|YP_008874722.1|	-	2.5e-22	78.4	0.1	3.8e-22	77.8	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_20	PF12840.7	gi|564288516|ref|YP_008874722.1|	-	0.00028	20.9	0.1	0.00069	19.6	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288516|ref|YP_008874722.1|	-	0.003	17.1	0.0	0.0051	16.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GerE	PF00196.19	gi|564288516|ref|YP_008874722.1|	-	0.0058	16.2	0.0	0.048	13.2	0.0	2.2	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
MarR_2	PF12802.7	gi|564288516|ref|YP_008874722.1|	-	0.0068	16.3	0.1	0.023	14.6	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564288516|ref|YP_008874722.1|	-	0.016	15.1	0.0	0.029	14.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|564288516|ref|YP_008874722.1|	-	0.045	13.7	0.0	0.084	12.8	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
Sigma70_r4_2	PF08281.12	gi|564288516|ref|YP_008874722.1|	-	0.049	13.3	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|564288516|ref|YP_008874722.1|	-	0.053	13.1	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_22	PF13309.6	gi|564288516|ref|YP_008874722.1|	-	0.16	12.1	0.0	0.32	11.1	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
MutS_V	PF00488.21	gi|564288517|ref|YP_008874723.1|	-	3.1e-79	265.4	0.0	5e-79	264.7	0.0	1.3	1	0	0	1	1	1	1	MutS	domain	V
MutS_I	PF01624.20	gi|564288517|ref|YP_008874723.1|	-	3.7e-37	127.0	0.0	1.1e-36	125.5	0.0	1.8	2	0	0	2	2	2	1	MutS	domain	I
MutS_III	PF05192.18	gi|564288517|ref|YP_008874723.1|	-	1.4e-34	120.0	3.0	2.3e-34	119.3	3.0	1.4	1	0	0	1	1	1	1	MutS	domain	III
MutS_IV	PF05190.18	gi|564288517|ref|YP_008874723.1|	-	2.1e-31	108.1	0.3	4e-31	107.2	0.3	1.5	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|564288517|ref|YP_008874723.1|	-	5.2e-12	46.2	0.0	1.7e-11	44.6	0.0	1.9	1	0	0	1	1	1	1	MutS	domain	II
Cpn60_TCP1	PF00118.24	gi|564288519|ref|YP_008874725.1|	-	1.5e-161	538.3	14.7	1.8e-161	538.2	14.7	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
OCD_Mu_crystall	PF02423.15	gi|564288521|ref|YP_008874727.1|	-	1.8e-90	303.1	2.3	2.1e-90	302.9	2.3	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|564288521|ref|YP_008874727.1|	-	0.00082	19.5	0.0	0.0016	18.5	0.0	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
zf-ribbon_3	PF13248.6	gi|564288523|ref|YP_008874729.1|	-	0.00098	18.4	1.5	0.053	12.9	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_13	PF09855.9	gi|564288523|ref|YP_008874729.1|	-	0.011	15.9	0.2	0.015	15.4	0.2	1.3	1	0	0	1	1	1	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Prok-RING_1	PF14446.6	gi|564288523|ref|YP_008874729.1|	-	0.016	15.1	2.0	0.74	9.8	0.6	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf_UBZ	PF18439.1	gi|564288523|ref|YP_008874729.1|	-	0.042	13.5	0.6	2	8.1	0.2	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-HYPF	PF07503.12	gi|564288523|ref|YP_008874729.1|	-	0.042	13.6	3.1	1	9.2	0.9	2.2	2	0	0	2	2	2	0	HypF	finger
Terminase_GpA	PF05876.12	gi|564288523|ref|YP_008874729.1|	-	0.15	10.5	0.0	0.17	10.4	0.0	1.1	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
Zn_ribbon_recom	PF13408.6	gi|564288523|ref|YP_008874729.1|	-	0.2	12.2	0.9	5.8	7.5	0.5	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Lar_restr_allev	PF14354.6	gi|564288523|ref|YP_008874729.1|	-	0.2	12.0	2.5	4.1	7.8	2.5	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-C4_Topoisom	PF01396.19	gi|564288523|ref|YP_008874729.1|	-	0.22	11.3	1.7	1.4	8.7	0.1	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
UPF0547	PF10571.9	gi|564288523|ref|YP_008874729.1|	-	0.46	10.6	0.4	0.46	10.6	0.4	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Ogr_Delta	PF04606.12	gi|564288523|ref|YP_008874729.1|	-	2.6	8.1	5.3	1.5	8.8	0.7	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-TFIIB	PF13453.6	gi|564288524|ref|YP_008874730.1|	-	0.012	14.9	0.6	0.062	12.6	0.1	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
CpXC	PF14353.6	gi|564288524|ref|YP_008874730.1|	-	0.019	15.0	0.3	0.025	14.6	0.3	1.1	1	0	0	1	1	1	0	CpXC	protein
zf-ribbon_3	PF13248.6	gi|564288524|ref|YP_008874730.1|	-	0.039	13.4	1.1	2.6	7.6	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|564288524|ref|YP_008874730.1|	-	0.081	12.9	0.5	2.5	8.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Herpes_UL49_5	PF05702.11	gi|564288524|ref|YP_008874730.1|	-	0.092	12.8	0.0	0.095	12.8	0.0	1.1	1	0	0	1	1	1	0	Herpesvirus	UL49.5	envelope/tegument	protein
Terminase_GpA	PF05876.12	gi|564288524|ref|YP_008874730.1|	-	0.15	10.6	0.0	0.15	10.6	0.0	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
HATPase_c	PF02518.26	gi|564288525|ref|YP_008874731.1|	-	7e-09	36.2	0.0	9.5e-08	32.5	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|564288525|ref|YP_008874731.1|	-	1.1e-07	32.1	0.4	3e-07	30.7	0.4	1.8	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|564288525|ref|YP_008874731.1|	-	0.0045	17.0	1.1	0.0084	16.1	0.1	2.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
tRNA-synt_1	PF00133.22	gi|564288526|ref|YP_008874732.1|	-	9.2e-72	242.2	5.5	1.1e-26	93.3	0.1	4.9	1	1	3	4	4	4	4	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|564288526|ref|YP_008874732.1|	-	5.8e-59	198.7	0.0	1e-58	197.9	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|564288526|ref|YP_008874732.1|	-	4.2e-35	121.2	0.0	1.7e-23	83.0	0.0	4.4	3	1	1	4	4	4	4	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|564288526|ref|YP_008874732.1|	-	2.3e-15	56.9	0.0	4.4e-15	56.0	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|564288526|ref|YP_008874732.1|	-	0.00035	20.0	0.0	0.044	13.1	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.18	gi|564288526|ref|YP_008874732.1|	-	0.004	16.1	0.0	0.61	9.0	0.0	2.5	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
zf-ribbon_3	PF13248.6	gi|564288526|ref|YP_008874732.1|	-	0.026	14.0	5.7	9.3	5.8	0.1	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
DZR	PF12773.7	gi|564288526|ref|YP_008874732.1|	-	0.056	13.5	5.8	1.3	9.1	0.9	3.1	2	1	1	3	3	3	0	Double	zinc	ribbon
IBR	PF01485.21	gi|564288526|ref|YP_008874732.1|	-	0.25	11.6	4.4	0.38	11.0	0.7	2.4	2	1	0	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
DNA_ligase_ZBD	PF03119.16	gi|564288526|ref|YP_008874732.1|	-	0.72	9.9	0.0	0.72	9.9	0.0	3.0	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TF_Zn_Ribbon	PF08271.12	gi|564288526|ref|YP_008874732.1|	-	2.8	7.5	8.9	15	5.2	0.6	3.7	3	0	0	3	3	3	0	TFIIB	zinc-binding
Auto_anti-p27	PF06677.12	gi|564288526|ref|YP_008874732.1|	-	5	7.4	6.0	1.3	9.2	0.2	2.7	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
AhpC-TSA	PF00578.21	gi|564288527|ref|YP_008874733.1|	-	1.4e-29	102.5	0.0	1.6e-29	102.3	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564288527|ref|YP_008874733.1|	-	3.5e-18	65.7	0.0	3.8e-18	65.6	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|564288527|ref|YP_008874733.1|	-	0.00058	20.0	0.0	0.00073	19.6	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|564288527|ref|YP_008874733.1|	-	0.044	13.3	0.0	0.052	13.1	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
HSP20	PF00011.21	gi|564288528|ref|YP_008874734.1|	-	3.1e-19	69.0	0.3	3.6e-19	68.8	0.3	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|564288528|ref|YP_008874734.1|	-	1.6e-12	46.8	0.0	2.3e-12	46.3	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
GvpH	PF05455.11	gi|564288528|ref|YP_008874734.1|	-	0.0017	18.5	0.8	0.0017	18.5	0.8	2.0	1	1	1	2	2	2	1	GvpH
PDT	PF00800.18	gi|564288529|ref|YP_008874735.1|	-	2.6e-49	167.5	0.2	3.3e-49	167.2	0.2	1.1	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.25	gi|564288529|ref|YP_008874735.1|	-	5.9e-07	29.1	0.0	2.4e-06	27.2	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
DUF4234	PF14018.6	gi|564291276|ref|YP_008874736.1|	-	6.1e-05	23.1	4.5	0.00015	21.8	4.5	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4234)
Pyr_redox_2	PF07992.14	gi|564288531|ref|YP_008874738.1|	-	7.3e-65	219.1	4.1	1.2e-64	218.4	4.1	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|564288531|ref|YP_008874738.1|	-	2.6e-36	124.2	2.2	3.7e-36	123.7	0.4	2.2	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|564288531|ref|YP_008874738.1|	-	3.5e-20	72.4	3.2	4.4e-17	62.4	0.3	2.8	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288531|ref|YP_008874738.1|	-	6.1e-10	38.8	0.3	7.6e-06	25.4	0.0	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564288531|ref|YP_008874738.1|	-	1.1e-09	37.9	5.3	5.6e-08	32.3	0.5	2.9	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|564288531|ref|YP_008874738.1|	-	8.8e-06	25.3	0.7	8.8e-06	25.3	0.7	2.3	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288531|ref|YP_008874738.1|	-	3.8e-05	23.0	7.8	0.00033	19.9	0.5	3.4	3	0	0	3	3	3	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564288531|ref|YP_008874738.1|	-	0.00023	21.3	4.5	0.045	14.0	0.7	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564288531|ref|YP_008874738.1|	-	0.00058	19.5	1.7	0.00082	19.0	0.1	2.0	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_binding_3	PF01494.19	gi|564288531|ref|YP_008874738.1|	-	0.0012	18.2	10.3	0.066	12.5	1.0	3.1	2	1	0	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.14	gi|564288531|ref|YP_008874738.1|	-	0.0015	17.3	6.3	0.048	12.4	0.2	3.3	3	1	1	4	4	4	1	HI0933-like	protein
3HCDH_N	PF02737.18	gi|564288531|ref|YP_008874738.1|	-	0.0033	17.3	1.4	0.0061	16.5	0.1	2.1	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|564288531|ref|YP_008874738.1|	-	0.0045	17.4	0.3	0.2	12.1	0.0	2.7	2	0	0	2	2	2	1	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|564288531|ref|YP_008874738.1|	-	0.0052	16.1	4.6	0.21	10.8	0.1	2.9	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.6	gi|564288531|ref|YP_008874738.1|	-	0.012	16.1	1.9	0.29	11.6	0.7	3.0	2	1	0	2	2	2	0	XdhC	Rossmann	domain
TetR_C_20	PF17925.1	gi|564288531|ref|YP_008874738.1|	-	0.015	15.6	3.9	0.92	9.9	0.1	2.6	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
NADH_oxidored	PF08040.11	gi|564288532|ref|YP_008874739.1|	-	0.023	14.4	0.2	2.1	8.1	0.0	2.5	3	0	0	3	3	3	0	MNLL	subunit
Vut_1	PF02592.15	gi|564288532|ref|YP_008874739.1|	-	0.025	14.9	0.3	0.03	14.6	0.3	1.1	1	0	0	1	1	1	0	Putative	vitamin	uptake	transporter
NCE101	PF11654.8	gi|564288532|ref|YP_008874739.1|	-	0.13	12.0	0.1	0.13	12.0	0.1	1.8	2	0	0	2	2	2	0	Non-classical	export	protein	1
BatA	PF07584.11	gi|564288532|ref|YP_008874739.1|	-	0.72	10.3	0.1	0.72	10.3	0.1	2.8	2	1	1	3	3	3	0	Aerotolerance	regulator	N-terminal
MatC_N	PF07158.11	gi|564288532|ref|YP_008874739.1|	-	2	8.4	6.9	19	5.3	5.6	2.3	1	1	0	1	1	1	0	Dicarboxylate	carrier	protein	MatC	N-terminus
Yip1	PF04893.17	gi|564288532|ref|YP_008874739.1|	-	6.6	6.4	14.6	16	5.2	14.6	1.6	1	1	0	1	1	1	0	Yip1	domain
2-oxoacid_dh	PF00198.23	gi|564288533|ref|YP_008874740.1|	-	2.4e-82	275.9	0.0	3.4e-82	275.4	0.0	1.2	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.22	gi|564288533|ref|YP_008874740.1|	-	2e-24	85.2	1.0	4.6e-24	84.0	1.0	1.7	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.17	gi|564288533|ref|YP_008874740.1|	-	1.9e-23	82.5	2.0	7.2e-18	64.6	0.7	2.9	2	0	0	2	2	2	2	e3	binding	domain
Biotin_lipoyl_2	PF13533.6	gi|564288533|ref|YP_008874740.1|	-	3.2e-09	36.5	0.7	8e-05	22.4	0.5	3.2	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD_3	PF13437.6	gi|564288533|ref|YP_008874740.1|	-	8.1e-06	26.5	2.6	0.00098	19.8	0.3	2.9	1	1	1	2	2	2	1	HlyD	family	secretion	protein
HlyD_D23	PF16576.5	gi|564288533|ref|YP_008874740.1|	-	0.00013	21.2	0.7	0.00072	18.8	0.8	2.0	1	1	1	2	2	2	1	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
GCV_H	PF01597.19	gi|564288533|ref|YP_008874740.1|	-	0.00054	19.8	0.4	0.0012	18.8	0.4	1.6	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
PYNP_C	PF07831.13	gi|564288533|ref|YP_008874740.1|	-	0.018	14.6	0.2	1.3	8.8	0.0	2.7	2	0	0	2	2	2	0	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
RnfC_N	PF13375.6	gi|564288533|ref|YP_008874740.1|	-	0.025	14.5	0.5	0.067	13.2	0.5	1.7	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
NQRA	PF05896.11	gi|564288533|ref|YP_008874740.1|	-	0.036	13.5	0.1	0.082	12.3	0.1	1.5	1	0	0	1	1	1	0	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
CAT	PF00302.18	gi|564288533|ref|YP_008874740.1|	-	0.11	12.4	0.0	0.35	10.8	0.0	1.7	2	0	0	2	2	2	0	Chloramphenicol	acetyltransferase
Transket_pyr	PF02779.24	gi|564288534|ref|YP_008874741.1|	-	6.8e-50	169.2	0.0	9.4e-50	168.7	0.0	1.1	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.20	gi|564288534|ref|YP_008874741.1|	-	9.5e-39	132.1	0.0	1.6e-38	131.3	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
PFOR_II	PF17147.4	gi|564288534|ref|YP_008874741.1|	-	0.0015	18.8	0.0	0.0038	17.5	0.0	1.6	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
E1_dh	PF00676.20	gi|564288535|ref|YP_008874742.1|	-	4.5e-85	285.2	0.0	5.4e-85	284.9	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|564288535|ref|YP_008874742.1|	-	1.5e-05	24.3	0.0	2.1e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
Transketolase_N	PF00456.21	gi|564288535|ref|YP_008874742.1|	-	0.002	17.1	0.0	0.0036	16.3	0.0	1.5	1	1	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
HTH_41	PF14502.6	gi|564288535|ref|YP_008874742.1|	-	0.02	14.6	0.0	0.054	13.2	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Radical_SAM	PF04055.21	gi|564288536|ref|YP_008874743.1|	-	3.3e-11	43.8	0.0	1.7e-10	41.5	0.0	2.2	2	1	0	2	2	2	1	Radical	SAM	superfamily
LIAS_N	PF16881.5	gi|564288536|ref|YP_008874743.1|	-	3.3e-10	40.3	0.1	6e-10	39.5	0.1	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	lipoyl	synthase	of	Radical_SAM	family
B12-binding	PF02310.19	gi|564288536|ref|YP_008874743.1|	-	0.047	13.7	0.1	5.7	7.0	0.0	2.8	2	1	1	3	3	3	0	B12	binding	domain
Methyltransf_25	PF13649.6	gi|564288537|ref|YP_008874744.1|	-	4e-19	69.1	0.5	9.9e-18	64.6	0.1	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288537|ref|YP_008874744.1|	-	1.3e-15	57.8	0.2	9.8e-15	55.0	0.1	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288537|ref|YP_008874744.1|	-	3.6e-09	36.7	0.0	1.2e-08	35.0	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288537|ref|YP_008874744.1|	-	1.9e-08	34.9	0.0	5.9e-08	33.4	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288537|ref|YP_008874744.1|	-	1.8e-07	31.1	0.0	3e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288537|ref|YP_008874744.1|	-	6.1e-06	25.7	0.0	1.3e-05	24.6	0.0	1.5	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
TehB	PF03848.14	gi|564288537|ref|YP_008874744.1|	-	6.1e-05	22.5	0.0	8.8e-05	22.0	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
CMAS	PF02353.20	gi|564288537|ref|YP_008874744.1|	-	0.00015	21.2	0.0	0.0002	20.8	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.14	gi|564288537|ref|YP_008874744.1|	-	0.0015	18.1	0.0	0.0033	17.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.7	gi|564288537|ref|YP_008874744.1|	-	0.017	15.0	0.0	0.026	14.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Crust_neuro_H	PF03858.13	gi|564288537|ref|YP_008874744.1|	-	0.049	14.4	0.1	2.2	9.2	0.0	2.7	2	0	0	2	2	2	0	Crustacean	neurohormone	H
DUF938	PF06080.12	gi|564288537|ref|YP_008874744.1|	-	0.099	12.4	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
PCMT	PF01135.19	gi|564288537|ref|YP_008874744.1|	-	0.12	12.1	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_15	PF09445.10	gi|564288537|ref|YP_008874744.1|	-	0.15	11.7	0.0	0.2	11.2	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DEAD	PF00270.29	gi|564288538|ref|YP_008874745.1|	-	2.7e-24	85.9	0.0	5.6e-24	84.8	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Sec63	PF02889.16	gi|564288538|ref|YP_008874745.1|	-	2.3e-14	53.2	0.0	5.5e-14	52.0	0.0	1.4	1	1	0	1	1	1	1	Sec63	Brl	domain
ResIII	PF04851.15	gi|564288538|ref|YP_008874745.1|	-	9.6e-12	45.2	0.0	1.5e-11	44.6	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|564288538|ref|YP_008874745.1|	-	2.4e-07	31.1	0.0	1.6e-06	28.4	0.0	2.3	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.6	gi|564288538|ref|YP_008874745.1|	-	0.0038	17.8	0.8	0.014	16.0	0.8	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
T2SSE	PF00437.20	gi|564288538|ref|YP_008874745.1|	-	0.1	11.7	0.0	0.2	10.7	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DNA_pol_lambd_f	PF10391.9	gi|564288538|ref|YP_008874745.1|	-	0.11	12.3	0.1	0.31	10.9	0.1	1.7	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
HemN_C	PF06969.16	gi|564288538|ref|YP_008874745.1|	-	0.14	12.3	0.0	0.35	11.0	0.0	1.7	1	0	0	1	1	1	0	HemN	C-terminal	domain
HAD_2	PF13419.6	gi|564288540|ref|YP_008874747.1|	-	3.1e-24	86.0	0.0	3.7e-24	85.8	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564288540|ref|YP_008874747.1|	-	6.4e-17	62.5	0.1	3.6e-15	56.8	0.1	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564288540|ref|YP_008874747.1|	-	7.9e-08	32.3	0.2	5.4e-07	29.6	0.3	2.2	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|564288540|ref|YP_008874747.1|	-	0.004	17.2	0.0	0.048	13.8	0.0	2.2	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|564288540|ref|YP_008874747.1|	-	0.0058	16.4	0.0	0.011	15.5	0.0	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
zf-C4_Topoisom	PF01396.19	gi|564288541|ref|YP_008874748.1|	-	6.2e-08	32.3	7.0	2.4e-05	24.0	0.2	3.5	3	0	0	3	3	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
NucS	PF01939.16	gi|564288541|ref|YP_008874748.1|	-	2.1e-07	30.6	0.0	2.8e-07	30.1	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	NucS
zinc-ribbons_6	PF07191.12	gi|564288541|ref|YP_008874748.1|	-	0.0003	20.7	1.9	0.044	13.8	0.5	2.5	1	1	1	2	2	2	2	zinc-ribbons
Auto_anti-p27	PF06677.12	gi|564288541|ref|YP_008874748.1|	-	0.0046	17.1	18.3	0.63	10.2	2.5	4.5	4	0	0	4	4	4	2	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-TFIIB	PF13453.6	gi|564288541|ref|YP_008874748.1|	-	0.0058	15.9	10.9	0.17	11.3	0.1	3.9	3	1	2	5	5	5	2	Transcription	factor	zinc-finger
HypA	PF01155.19	gi|564288541|ref|YP_008874748.1|	-	0.038	14.0	3.3	0.35	10.9	1.2	2.8	1	1	2	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_Rg	PF17915.1	gi|564288541|ref|YP_008874748.1|	-	0.22	10.9	0.1	0.22	10.9	0.1	3.1	3	0	0	3	3	3	0	Reverse	gyrase	zinc	finger
zinc_ribbon_4	PF13717.6	gi|564288541|ref|YP_008874748.1|	-	0.32	11.0	0.2	0.32	11.0	0.2	4.1	5	0	0	5	5	5	0	zinc-ribbon	domain
DUF1272	PF06906.11	gi|564288541|ref|YP_008874748.1|	-	0.39	10.8	7.7	3.1	8.0	0.1	3.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1272)
DUF35_N	PF12172.8	gi|564288541|ref|YP_008874748.1|	-	2.8	7.9	12.7	8.9	6.3	0.5	5.0	4	0	0	4	4	4	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DnaJ_CXXCXGXG	PF00684.19	gi|564288541|ref|YP_008874748.1|	-	3.8	7.9	8.3	4.3	7.8	1.1	2.6	1	1	2	3	3	3	0	DnaJ	central	domain
Anti-TRAP	PF15777.5	gi|564288541|ref|YP_008874748.1|	-	7.5	6.6	9.2	16	5.5	0.0	3.6	2	1	1	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
OrfB_Zn_ribbon	PF07282.11	gi|564288541|ref|YP_008874748.1|	-	8.3	6.4	7.1	32	4.6	1.0	3.1	2	1	1	3	3	3	0	Putative	transposase	DNA-binding	domain
tRNA_int_endo	PF01974.17	gi|564288542|ref|YP_008874749.1|	-	5e-32	109.8	0.4	6.1e-24	83.9	0.0	3.7	2	1	0	2	2	2	2	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.14	gi|564288542|ref|YP_008874749.1|	-	1.5e-27	95.1	0.1	4.7e-13	48.6	0.0	2.4	2	0	0	2	2	2	2	tRNA	intron	endonuclease,	N-terminal	domain
tRNA-synt_1b	PF00579.25	gi|564288543|ref|YP_008874750.1|	-	2.2e-43	148.7	0.0	1.1e-25	90.6	0.0	2.1	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_2d	PF01409.20	gi|564288544|ref|YP_008874751.1|	-	4.8e-77	258.8	0.0	5.9e-77	258.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.20	gi|564288544|ref|YP_008874751.1|	-	0.00032	19.9	0.4	0.15	11.1	0.1	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	II	(D,	K	and	N)
MarR_2	PF12802.7	gi|564288544|ref|YP_008874751.1|	-	0.066	13.1	3.2	0.16	11.9	0.5	2.7	3	0	0	3	3	3	0	MarR	family
tRNA_synthFbeta	PF17759.1	gi|564288544|ref|YP_008874751.1|	-	0.086	12.3	0.0	7.5	5.9	0.0	2.3	2	0	0	2	2	2	0	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
MarR	PF01047.22	gi|564288544|ref|YP_008874751.1|	-	0.17	11.9	0.1	4.9	7.1	0.0	2.9	3	0	0	3	3	3	0	MarR	family
tRNA_synthFbeta	PF17759.1	gi|564288545|ref|YP_008874752.1|	-	8.7e-39	133.2	0.0	1.4e-38	132.5	0.0	1.3	1	0	0	1	1	1	1	Phenylalanyl	tRNA	synthetase	beta	chain	CLM	domain
B5	PF03484.15	gi|564288545|ref|YP_008874752.1|	-	8.7e-14	51.6	0.2	7.4e-13	48.6	0.3	2.4	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.17	gi|564288545|ref|YP_008874752.1|	-	1.1e-11	44.7	0.0	1.8e-11	44.0	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
PhetRS_B1	PF18262.1	gi|564288545|ref|YP_008874752.1|	-	5.9e-06	26.4	0.2	0.00046	20.4	0.0	2.8	2	0	0	2	2	2	1	Phe-tRNA	synthetase	beta	subunit	B1	domain
tRNA-synt_2d	PF01409.20	gi|564288545|ref|YP_008874752.1|	-	0.00064	19.3	0.0	0.001	18.6	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
RDD	PF06271.12	gi|564288546|ref|YP_008874753.1|	-	1e-13	51.7	1.7	1.2e-13	51.4	1.7	1.1	1	0	0	1	1	1	1	RDD	family
DHO_dh	PF01180.21	gi|564288547|ref|YP_008874754.1|	-	1.3e-80	270.7	0.0	1.6e-80	270.5	0.0	1.0	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
NMO	PF03060.15	gi|564288547|ref|YP_008874754.1|	-	0.0001	21.8	0.2	0.00018	21.1	0.2	1.3	1	0	0	1	1	1	1	Nitronate	monooxygenase
PucR	PF07905.11	gi|564288547|ref|YP_008874754.1|	-	0.07	13.4	0.0	0.2	11.9	0.0	1.8	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
HGD-D	PF06050.13	gi|564288547|ref|YP_008874754.1|	-	0.07	12.9	0.0	0.15	11.8	0.0	1.5	2	0	0	2	2	2	0	2-hydroxyglutaryl-CoA	dehydratase,	D-component
His_biosynth	PF00977.21	gi|564288547|ref|YP_008874754.1|	-	0.1	12.0	0.0	0.21	11.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	biosynthesis	protein
MazE_antitoxin	PF04014.18	gi|564288548|ref|YP_008874755.1|	-	0.014	15.4	0.2	0.02	14.8	0.2	1.3	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
SymE_toxin	PF08845.10	gi|564288548|ref|YP_008874755.1|	-	0.026	14.6	0.0	0.031	14.3	0.0	1.3	1	0	0	1	1	1	0	Toxin	SymE,	type	I	toxin-antitoxin	system
MC1	PF05854.11	gi|564288549|ref|YP_008874756.1|	-	1.7e-45	153.2	0.2	2.1e-45	152.9	0.2	1.0	1	0	0	1	1	1	1	Non-histone	chromosomal	protein	MC1
DUF5305	PF17231.2	gi|564288550|ref|YP_008874757.1|	-	2.3e-36	125.3	0.0	4.3e-36	124.4	0.0	1.5	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5305)
CopD	PF05425.13	gi|564288551|ref|YP_008874758.1|	-	0.037	14.4	0.6	0.037	14.4	0.6	3.1	2	1	1	3	3	3	0	Copper	resistance	protein	D
DUF3040	PF11239.8	gi|564288551|ref|YP_008874758.1|	-	4.5	7.6	13.0	0.18	12.1	3.1	2.8	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3040)
Laminin_G_3	PF13385.6	gi|564291277|ref|YP_008874762.1|	-	1.6e-22	80.3	1.8	3e-22	79.4	1.8	1.5	1	0	0	1	1	1	1	Concanavalin	A-like	lectin/glucanases	superfamily
MIB_HERC2	PF06701.13	gi|564291277|ref|YP_008874762.1|	-	0.75	10.1	3.9	6.1	7.2	1.6	2.6	1	1	1	2	2	2	0	Mib_herc2
Peptidase_S24	PF00717.23	gi|564288555|ref|YP_008874763.1|	-	2.2e-08	34.0	0.0	5.2e-08	32.7	0.0	1.6	1	0	0	1	1	1	1	Peptidase	S24-like
GCV_T_C	PF08669.11	gi|564288555|ref|YP_008874763.1|	-	0.0097	15.8	0.2	0.058	13.3	0.1	2.4	1	1	0	2	2	2	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FtsX	PF02687.21	gi|564288555|ref|YP_008874763.1|	-	0.62	10.6	5.5	3.3	8.2	0.5	2.7	2	1	0	2	2	2	0	FtsX-like	permease	family
HTH_AraC	PF00165.23	gi|564288557|ref|YP_008874765.1|	-	0.061	13.5	0.0	0.092	12.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
DUF4809	PF16067.5	gi|564288559|ref|YP_008874767.1|	-	0.062	13.5	0.1	0.13	12.4	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4809)
VirB3	PF05101.13	gi|564288560|ref|YP_008874768.1|	-	0.18	12.1	5.0	0.25	11.6	5.0	1.3	1	1	0	1	1	1	0	Type	IV	secretory	pathway,	VirB3-like	protein
DUF5338	PF17273.2	gi|564288562|ref|YP_008874770.1|	-	0.15	12.2	0.1	0.2	11.8	0.1	1.5	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5338)
NIR_SIR	PF01077.22	gi|564288564|ref|YP_008874772.1|	-	2.4e-46	157.1	0.0	2.2e-35	121.5	0.0	2.7	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|564288564|ref|YP_008874772.1|	-	3.1e-38	129.4	0.0	4.3e-19	68.1	0.0	3.3	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
UvrB_inter	PF17757.1	gi|564288566|ref|YP_008874774.1|	-	1.6e-31	108.3	0.0	5.5e-31	106.6	0.0	2.0	1	0	0	1	1	1	1	UvrB	interaction	domain
UvrB	PF12344.8	gi|564288566|ref|YP_008874774.1|	-	9.6e-19	67.0	1.1	9.6e-19	67.0	1.1	1.7	2	0	0	2	2	2	1	Ultra-violet	resistance	protein	B
Helicase_C	PF00271.31	gi|564288566|ref|YP_008874774.1|	-	1.2e-17	64.2	0.0	4.5e-17	62.4	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
UVR	PF02151.19	gi|564288566|ref|YP_008874774.1|	-	1.3e-10	40.6	10.5	6.7e-10	38.4	10.5	2.3	1	0	0	1	1	1	1	UvrB/uvrC	motif
ResIII	PF04851.15	gi|564288566|ref|YP_008874774.1|	-	7.2e-07	29.4	0.0	6.6e-06	26.2	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.6	gi|564288566|ref|YP_008874774.1|	-	0.0014	18.4	0.3	0.23	11.2	0.0	2.9	2	1	0	3	3	3	1	AAA	domain
AAA_19	PF13245.6	gi|564288566|ref|YP_008874774.1|	-	0.0029	17.9	0.2	3.1	8.1	0.1	2.8	3	0	0	3	3	3	2	AAA	domain
DEAD	PF00270.29	gi|564288566|ref|YP_008874774.1|	-	0.0031	17.3	1.0	0.041	13.7	0.0	3.2	3	1	1	4	4	4	1	DEAD/DEAH	box	helicase
UB2H	PF14814.6	gi|564288566|ref|YP_008874774.1|	-	0.016	15.2	0.0	0.058	13.4	0.0	2.0	2	0	0	2	2	1	0	Bifunctional	transglycosylase	second	domain
AAA_22	PF13401.6	gi|564288566|ref|YP_008874774.1|	-	0.017	15.4	0.3	5.8	7.2	0.0	2.9	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|564288566|ref|YP_008874774.1|	-	0.025	15.0	0.7	1.6	9.1	0.0	3.6	4	0	0	4	4	4	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF87	PF01935.17	gi|564288566|ref|YP_008874774.1|	-	0.07	13.2	0.0	0.07	13.2	0.0	2.7	4	0	0	4	4	4	0	Helicase	HerA,	central	domain
Cofilin_ADF	PF00241.20	gi|564288566|ref|YP_008874774.1|	-	0.12	12.1	0.1	0.34	10.7	0.1	1.7	1	0	0	1	1	1	0	Cofilin/tropomyosin-type	actin-binding	protein
NACHT	PF05729.12	gi|564288566|ref|YP_008874774.1|	-	0.14	12.0	0.0	2.5	8.0	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
Met_synt_B12	PF02965.17	gi|564288566|ref|YP_008874774.1|	-	0.19	11.1	1.2	0.4	10.1	0.1	2.0	2	0	0	2	2	2	0	Vitamin	B12	dependent	methionine	synthase,	activation	domain
DELLA	PF12041.8	gi|564288566|ref|YP_008874774.1|	-	0.66	9.9	2.5	0.57	10.1	0.4	2.0	2	0	0	2	2	1	0	Transcriptional	regulator	DELLA	protein	N	terminal
CdvA	PF18822.1	gi|564288566|ref|YP_008874774.1|	-	1	9.2	4.4	8.7	6.2	0.4	2.7	2	0	0	2	2	2	0	CdvA-like	coiled-coil	domain
Methyltransf_25	PF13649.6	gi|564288567|ref|YP_008874775.1|	-	0.00086	20.0	0.1	0.0014	19.3	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288567|ref|YP_008874775.1|	-	0.0036	16.9	0.3	0.007	15.9	0.1	1.5	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.12	gi|564288567|ref|YP_008874775.1|	-	0.0073	16.9	0.1	0.018	15.7	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
GATase_3	PF07685.14	gi|564288567|ref|YP_008874775.1|	-	0.017	14.7	0.0	0.027	14.1	0.0	1.3	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
PCMT	PF01135.19	gi|564288567|ref|YP_008874775.1|	-	0.021	14.6	0.0	0.038	13.8	0.0	1.3	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Cons_hypoth95	PF03602.15	gi|564288567|ref|YP_008874775.1|	-	0.12	12.0	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
TP_methylase	PF00590.20	gi|564288568|ref|YP_008874776.1|	-	1.2e-38	133.2	0.5	1.8e-38	132.7	0.5	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|564288569|ref|YP_008874777.1|	-	2.2e-40	138.9	0.6	2.7e-40	138.6	0.6	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Radical_SAM	PF04055.21	gi|564288569|ref|YP_008874777.1|	-	0.00099	19.5	0.0	0.0015	18.9	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
RraB	PF06877.11	gi|564288569|ref|YP_008874777.1|	-	0.065	14.0	0.0	0.26	12.1	0.0	1.9	2	0	0	2	2	2	0	Regulator	of	ribonuclease	activity	B
CbiG_N	PF11760.8	gi|564288570|ref|YP_008874778.1|	-	8e-27	93.1	0.0	1.9e-26	91.9	0.0	1.7	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.16	gi|564288570|ref|YP_008874778.1|	-	2.5e-24	86.1	0.6	1.2e-23	83.9	0.1	2.1	2	0	0	2	2	2	1	Cobalamin	synthesis	G	C-terminus
AIRS	PF00586.24	gi|564288570|ref|YP_008874778.1|	-	0.0004	21.0	1.7	0.0065	17.1	1.1	2.6	2	1	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
adh_short_C2	PF13561.6	gi|564288571|ref|YP_008874779.1|	-	6.5e-63	212.4	0.2	7.8e-63	212.2	0.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564288571|ref|YP_008874779.1|	-	1.7e-53	181.0	0.1	2.1e-53	180.7	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564288571|ref|YP_008874779.1|	-	1.6e-12	47.7	0.0	2.1e-12	47.3	0.0	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564288571|ref|YP_008874779.1|	-	9.6e-08	31.8	0.1	1.5e-07	31.1	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|564288571|ref|YP_008874779.1|	-	6.4e-06	25.4	0.5	9.9e-06	24.8	0.3	1.4	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|564288571|ref|YP_008874779.1|	-	0.034	14.0	0.3	0.053	13.4	0.3	1.7	1	1	0	1	1	1	0	NAD(P)H-binding
TP_methylase	PF00590.20	gi|564288572|ref|YP_008874780.1|	-	5.6e-43	147.4	0.1	6.9e-43	147.1	0.1	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.20	gi|564288573|ref|YP_008874781.1|	-	2.5e-39	135.4	0.6	3.1e-39	135.1	0.6	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Macoilin	PF09726.9	gi|564288573|ref|YP_008874781.1|	-	0.041	12.4	5.5	0.048	12.2	5.5	1.1	1	0	0	1	1	1	0	Macoilin	family
ParB_C	PF18064.1	gi|564288573|ref|YP_008874781.1|	-	0.31	11.2	0.9	1.7	8.9	0.1	2.3	2	0	0	2	2	2	0	Centromere-binding	protein	ParB	C-terminal
Apt1	PF10351.9	gi|564288573|ref|YP_008874781.1|	-	0.71	8.7	6.2	0.75	8.6	6.2	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
Fer4_15	PF13459.6	gi|564288574|ref|YP_008874782.1|	-	1.1e-19	70.9	8.9	1.7e-19	70.3	8.9	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|564288574|ref|YP_008874782.1|	-	6.9e-06	26.5	3.7	1.2e-05	25.7	3.7	1.4	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
LAGLIDADG_3	PF14528.6	gi|564288575|ref|YP_008874783.1|	-	0.016	15.5	0.0	0.039	14.3	0.0	1.6	2	0	0	2	2	2	0	LAGLIDADG-like	domain
Rhabdo_NV	PF02484.15	gi|564288575|ref|YP_008874783.1|	-	0.035	14.3	0.0	0.062	13.5	0.0	1.3	1	0	0	1	1	1	0	Rhabdovirus	Non-virion	protein
CbiX	PF01903.17	gi|564288576|ref|YP_008874784.1|	-	2.4e-42	143.6	0.0	9.3e-21	74.2	0.2	2.5	2	0	0	2	2	2	2	CbiX
2Fe-2S_thioredx	PF01257.19	gi|564288576|ref|YP_008874784.1|	-	1.2e-07	31.6	0.1	2.1e-07	30.9	0.1	1.3	1	0	0	1	1	1	1	Thioredoxin-like	[2Fe-2S]	ferredoxin
CbiK	PF06180.11	gi|564288576|ref|YP_008874784.1|	-	6.2e-05	22.5	0.0	0.033	13.5	0.0	2.1	1	1	1	2	2	2	2	Cobalt	chelatase	(CbiK)
Suc_Fer-like	PF06999.12	gi|564288576|ref|YP_008874784.1|	-	0.01	15.7	0.0	0.016	15.0	0.0	1.5	1	0	0	1	1	1	0	Sucrase/ferredoxin-like
DUF1636	PF07845.11	gi|564288576|ref|YP_008874784.1|	-	0.036	14.5	1.0	1.9	9.0	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1636)
DUF3209	PF11483.8	gi|564288577|ref|YP_008874785.1|	-	1.2e-55	187.3	3.3	1.3e-55	187.1	3.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3209)
T3SS_needle_E	PF08988.10	gi|564288577|ref|YP_008874785.1|	-	0.0071	16.5	0.2	0.016	15.4	0.2	1.6	1	0	0	1	1	1	1	Type	III	secretion	system,	cytoplasmic	E	component	of	needle
DUF2278	PF10042.9	gi|564288577|ref|YP_008874785.1|	-	0.077	13.0	0.0	0.081	12.9	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2278)
PQQ_2	PF13360.6	gi|564288578|ref|YP_008874786.1|	-	8.7e-10	38.6	7.7	5.7e-05	22.8	1.9	2.7	1	1	1	2	2	2	2	PQQ-like	domain
PQQ_3	PF13570.6	gi|564288578|ref|YP_008874786.1|	-	4.1e-08	33.5	35.8	0.014	15.9	0.2	8.8	7	2	0	7	7	7	4	PQQ-like	domain
PQQ	PF01011.21	gi|564288578|ref|YP_008874786.1|	-	0.00051	19.8	16.0	1.9	8.6	0.0	7.6	7	1	1	8	8	8	3	PQQ	enzyme	repeat
DUF3552	PF12072.8	gi|564288579|ref|YP_008874787.1|	-	3e-12	46.4	26.4	1.7e-08	34.1	13.2	2.3	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3552)
DUF4200	PF13863.6	gi|564288579|ref|YP_008874787.1|	-	0.0025	18.2	20.2	0.077	13.4	10.7	2.3	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4200)
V_ATPase_I	PF01496.19	gi|564288579|ref|YP_008874787.1|	-	0.0049	14.9	0.3	0.0051	14.8	0.3	1.0	1	0	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
Spc7	PF08317.11	gi|564288579|ref|YP_008874787.1|	-	0.028	13.3	16.4	0.035	13.0	16.4	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Exonuc_VII_L	PF02601.15	gi|564288579|ref|YP_008874787.1|	-	0.033	13.8	7.8	0.043	13.4	7.8	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
TPR_MLP1_2	PF07926.12	gi|564288579|ref|YP_008874787.1|	-	0.041	14.0	19.6	0.11	12.6	8.5	2.3	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
Atg14	PF10186.9	gi|564288579|ref|YP_008874787.1|	-	0.4	9.7	12.1	0.83	8.7	12.1	1.5	1	1	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
UPF0242	PF06785.11	gi|564288579|ref|YP_008874787.1|	-	0.48	10.5	15.4	0.7	10.0	15.4	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Fez1	PF06818.15	gi|564288579|ref|YP_008874787.1|	-	1.2	9.6	19.7	2.7	8.4	6.4	2.1	1	1	1	2	2	2	0	Fez1
Phage_holin_3_6	PF07332.11	gi|564288579|ref|YP_008874787.1|	-	1.3	9.1	9.0	2	8.5	9.0	1.3	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF812	PF05667.11	gi|564288579|ref|YP_008874787.1|	-	1.4	7.7	14.7	1.8	7.3	14.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Fumarate_red_D	PF02313.17	gi|564288579|ref|YP_008874787.1|	-	1.5	9.0	6.9	0.21	11.7	3.0	1.6	1	1	1	2	2	2	0	Fumarate	reductase	subunit	D
DUF390	PF04094.14	gi|564288579|ref|YP_008874787.1|	-	1.9	6.7	18.8	2.2	6.5	18.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF390)
OmpH	PF03938.14	gi|564288579|ref|YP_008874787.1|	-	1.9	8.8	18.6	3.9e+02	1.3	18.6	2.2	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
UPF0564	PF10595.9	gi|564288579|ref|YP_008874787.1|	-	2.2	7.3	13.7	2.8	6.9	13.7	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0564
Jnk-SapK_ap_N	PF09744.9	gi|564288579|ref|YP_008874787.1|	-	4.4	7.5	21.9	4.2	7.6	20.9	1.4	1	1	0	1	1	1	0	JNK_SAPK-associated	protein-1
UPF0449	PF15136.6	gi|564288579|ref|YP_008874787.1|	-	7.8	7.0	15.2	0.52	10.8	3.3	2.4	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0449
CbtA	PF09490.10	gi|564288580|ref|YP_008874788.1|	-	1.2e-34	120.2	31.9	1.6e-34	119.8	31.9	1.2	1	0	0	1	1	1	1	Probable	cobalt	transporter	subunit	(CbtA)
DUF4064	PF13273.6	gi|564288580|ref|YP_008874788.1|	-	0.054	13.8	2.8	2.2	8.6	2.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
YqhR	PF11085.8	gi|564288580|ref|YP_008874788.1|	-	0.2	11.6	0.1	0.2	11.6	0.1	2.3	3	1	0	3	3	3	0	Conserved	membrane	protein	YqhR
CbtB	PF09489.10	gi|564288581|ref|YP_008874789.1|	-	2.4e-13	50.0	1.9	2.4e-13	50.0	1.9	1.4	2	0	0	2	2	2	1	Probable	cobalt	transporter	subunit	(CbtB)
AAA_lid_2	PF17863.1	gi|564288582|ref|YP_008874790.1|	-	7.7e-21	73.7	2.3	7.7e-21	73.7	2.3	2.1	2	0	0	2	2	2	1	AAA	lid	domain
VWA_2	PF13519.6	gi|564288582|ref|YP_008874790.1|	-	4.2e-14	53.1	0.0	1e-13	51.9	0.0	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Mg_chelatase	PF01078.21	gi|564288582|ref|YP_008874790.1|	-	2.2e-11	43.5	0.0	6.2e-09	35.5	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.14	gi|564288582|ref|YP_008874790.1|	-	1.3e-09	38.2	0.0	8.6e-06	25.8	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
VWA	PF00092.28	gi|564288582|ref|YP_008874790.1|	-	3.1e-09	37.3	0.0	5.4e-09	36.5	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
MCM	PF00493.23	gi|564288582|ref|YP_008874790.1|	-	3.3e-05	23.1	0.0	0.00018	20.7	0.0	2.1	2	0	0	2	2	2	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|564288582|ref|YP_008874790.1|	-	0.0034	17.1	0.0	0.09	12.5	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_16	PF13191.6	gi|564288582|ref|YP_008874790.1|	-	0.0056	17.1	4.1	0.026	14.9	2.1	3.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_3	PF07726.11	gi|564288582|ref|YP_008874790.1|	-	0.16	11.8	0.0	2.9	7.8	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|564288582|ref|YP_008874790.1|	-	0.17	12.1	0.0	1.3	9.2	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
CobN-Mg_chel	PF02514.16	gi|564288583|ref|YP_008874791.1|	-	0	1263.0	0.0	0	1262.7	0.0	1.1	1	0	0	1	1	1	1	CobN/Magnesium	Chelatase
LexA_DNA_bind	PF01726.16	gi|564288583|ref|YP_008874791.1|	-	0.018	14.8	0.0	0.051	13.4	0.0	1.7	1	0	0	1	1	1	0	LexA	DNA	binding	domain
CbiC	PF02570.15	gi|564288584|ref|YP_008874792.1|	-	4.9e-53	179.7	0.6	5.7e-53	179.5	0.6	1.0	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
TP_methylase	PF00590.20	gi|564288585|ref|YP_008874793.1|	-	3e-31	109.0	0.5	3.5e-31	108.8	0.5	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
DUF2062	PF09835.9	gi|564288586|ref|YP_008874794.1|	-	9.8e-21	74.2	2.6	1.1e-20	74.0	2.6	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2062)
DUF2755	PF10954.8	gi|564288586|ref|YP_008874794.1|	-	0.004	17.1	1.7	0.51	10.3	0.0	2.5	2	1	1	3	3	3	2	Protein	of	unknown	function	(DUF2755)
FeoB_associated	PF12669.7	gi|564288586|ref|YP_008874794.1|	-	0.27	11.7	1.6	0.84	10.1	0.1	2.1	2	0	0	2	2	2	0	FeoB-associated	Cys-rich	membrane	protein
Phage_holin_3_6	PF07332.11	gi|564288586|ref|YP_008874794.1|	-	0.34	11.0	12.5	4.5	7.4	12.5	2.3	1	1	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF202	PF02656.15	gi|564288586|ref|YP_008874794.1|	-	1.5	9.3	5.8	5.2	7.6	4.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
TM_helix	PF05552.12	gi|564288586|ref|YP_008874794.1|	-	3.3	7.8	10.3	0.59	10.1	3.9	2.4	2	0	0	2	2	2	0	Conserved	TM	helix
CbiX	PF01903.17	gi|564288587|ref|YP_008874795.1|	-	6.2e-20	71.5	0.2	2.5e-10	40.6	0.0	2.2	2	0	0	2	2	2	2	CbiX
SSXRD	PF09514.10	gi|564288587|ref|YP_008874795.1|	-	0.11	12.1	1.0	5.2	6.7	0.1	2.3	2	0	0	2	2	2	0	SSXRD	motif
TrkA_C	PF02080.21	gi|564288588|ref|YP_008874796.1|	-	3e-16	59.0	0.1	9.1e-16	57.5	0.0	1.8	2	0	0	2	2	2	1	TrkA-C	domain
Na_H_Exchanger	PF00999.21	gi|564288589|ref|YP_008874797.1|	-	1.8e-50	171.8	41.9	2.3e-50	171.5	41.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
YbgT_YccB	PF08173.11	gi|564288589|ref|YP_008874797.1|	-	0.053	13.7	1.6	0.85	9.8	1.6	3.3	1	0	0	1	1	1	0	Membrane	bound	YbgT-like	protein
ADH_zinc_N	PF00107.26	gi|564288590|ref|YP_008874798.1|	-	9e-39	132.4	0.3	6.7e-38	129.6	0.2	2.2	2	1	1	3	3	3	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|564288590|ref|YP_008874798.1|	-	4.9e-22	79.4	0.0	8.7e-22	78.6	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|564288590|ref|YP_008874798.1|	-	2.5e-17	62.7	0.0	5.3e-17	61.7	0.0	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
adh_short	PF00106.25	gi|564288590|ref|YP_008874798.1|	-	1.5e-05	24.6	0.2	2.1e-05	24.1	0.2	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|564288590|ref|YP_008874798.1|	-	0.00012	21.4	2.9	0.00057	19.2	1.4	2.4	2	1	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
DapB_N	PF01113.20	gi|564288590|ref|YP_008874798.1|	-	0.00091	19.4	0.3	0.0018	18.4	0.3	1.4	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.24	gi|564288590|ref|YP_008874798.1|	-	0.007	16.8	0.3	0.013	15.9	0.3	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
THF_DHG_CYH_C	PF02882.19	gi|564288590|ref|YP_008874798.1|	-	0.0099	15.2	0.0	0.6	9.4	0.0	2.3	1	1	1	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
NAD_binding_10	PF13460.6	gi|564288590|ref|YP_008874798.1|	-	0.046	13.6	1.2	0.19	11.6	1.2	1.9	1	1	0	1	1	1	0	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|564288590|ref|YP_008874798.1|	-	0.094	11.8	0.1	0.17	10.9	0.1	1.5	1	1	0	1	1	1	0	RmlD	substrate	binding	domain
Epimerase	PF01370.21	gi|564288590|ref|YP_008874798.1|	-	0.11	11.9	0.3	0.16	11.4	0.3	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
ACP_syn_III_C	PF08541.10	gi|564288590|ref|YP_008874798.1|	-	4.4	7.6	5.1	0.64	10.2	0.2	2.1	3	0	0	3	3	3	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
DUF1427	PF07235.11	gi|564288591|ref|YP_008874799.1|	-	5.4e-07	29.5	5.7	6e-07	29.3	5.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1427)
Bacillus_PapR	PF05968.11	gi|564288591|ref|YP_008874799.1|	-	0.89	9.5	3.0	0.52	10.2	1.2	1.6	2	0	0	2	2	2	0	Bacillus	PapR	protein
Zip	PF02535.22	gi|564288592|ref|YP_008874800.1|	-	2.2	7.4	6.2	0.65	9.2	0.3	2.0	2	0	0	2	2	2	0	ZIP	Zinc	transporter
CarboxypepD_reg	PF13620.6	gi|564288593|ref|YP_008874801.1|	-	1.7e-14	53.8	16.4	5.8e-12	45.7	5.1	4.5	5	0	0	5	5	5	2	Carboxypeptidase	regulatory-like	domain
DDOST_48kD	PF03345.14	gi|564288593|ref|YP_008874801.1|	-	4.4e-10	39.0	0.1	1.2e-09	37.6	0.0	1.6	2	0	0	2	2	2	1	Oligosaccharyltransferase	48	kDa	subunit	beta
ABC_transp_aux	PF09822.9	gi|564288593|ref|YP_008874801.1|	-	5.5e-09	35.9	0.0	1.1e-08	34.9	0.0	1.4	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
PGF-CTERM	PF18204.1	gi|564288593|ref|YP_008874801.1|	-	0.00017	21.4	5.4	0.00034	20.5	5.4	1.5	1	0	0	1	1	1	1	PGF-CTERM	motif
PEGA	PF08308.11	gi|564288593|ref|YP_008874801.1|	-	0.00063	19.6	1.9	1.1	9.2	0.1	3.9	3	0	0	3	3	3	2	PEGA	domain
DUF4350	PF14258.6	gi|564288593|ref|YP_008874801.1|	-	0.0011	19.4	0.2	0.021	15.2	0.0	3.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
PHP	PF02811.19	gi|564288593|ref|YP_008874801.1|	-	0.12	12.6	0.0	0.22	11.8	0.0	1.4	1	0	0	1	1	1	0	PHP	domain
IU_nuc_hydro	PF01156.19	gi|564288594|ref|YP_008874802.1|	-	3.2e-74	250.3	4.6	3.7e-74	250.0	4.6	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
5_nucleotid_C	PF02872.18	gi|564288595|ref|YP_008874803.1|	-	2.4e-50	170.8	0.9	4.4e-50	170.0	0.3	1.7	2	0	0	2	2	2	1	5'-nucleotidase,	C-terminal	domain
UCR_Fe-S_N	PF10399.9	gi|564288595|ref|YP_008874803.1|	-	0.076	12.4	0.2	0.18	11.2	0.2	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.9	gi|564288595|ref|YP_008874803.1|	-	0.087	12.7	1.7	0.19	11.6	1.7	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Reprolysin_3	PF13582.6	gi|564288595|ref|YP_008874803.1|	-	0.093	13.3	0.5	2.6	8.6	0.2	2.6	2	0	0	2	2	2	0	Metallo-peptidase	family	M12B	Reprolysin-like
Imm35	PF15567.6	gi|564288595|ref|YP_008874803.1|	-	0.093	12.9	0.1	0.37	11.0	0.0	1.9	2	0	0	2	2	2	0	Immunity	protein	35
Iron_transport	PF10634.9	gi|564288596|ref|YP_008874804.1|	-	6.2e-06	26.5	0.0	3.4e-05	24.1	0.0	2.1	2	0	0	2	2	2	1	Fe2+	transport	protein
MR_MLE_C	PF13378.6	gi|564288598|ref|YP_008874806.1|	-	2.6e-42	144.9	0.5	3.7e-42	144.4	0.5	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564288598|ref|YP_008874806.1|	-	3.5e-11	43.3	0.0	6.1e-11	42.6	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Lactamase_B_2	PF12706.7	gi|564288599|ref|YP_008874807.1|	-	1.3e-14	54.3	0.2	1.8e-14	53.7	0.2	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|564288599|ref|YP_008874807.1|	-	1.1e-11	44.9	0.0	1.5e-11	44.5	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
TRAM_2	PF18693.1	gi|564288599|ref|YP_008874807.1|	-	0.028	14.6	0.2	0.06	13.5	0.2	1.5	1	0	0	1	1	1	0	TRAM	domain
GFO_IDH_MocA	PF01408.22	gi|564288600|ref|YP_008874808.1|	-	1.5e-22	80.7	0.2	2.6e-22	79.9	0.2	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|564288600|ref|YP_008874808.1|	-	0.1	12.6	0.0	0.26	11.3	0.0	1.7	1	1	1	2	2	2	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Aldedh	PF00171.22	gi|564288601|ref|YP_008874809.1|	-	8.2e-163	542.2	1.0	9.4e-163	542.0	1.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
zf-Di19	PF05605.12	gi|564288602|ref|YP_008874810.1|	-	0.013	15.7	0.6	0.019	15.2	0.6	1.2	1	0	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Peptidase_M48	PF01435.18	gi|564288603|ref|YP_008874811.1|	-	6.3e-29	101.1	0.2	7.4e-27	94.4	0.2	2.2	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|564288603|ref|YP_008874811.1|	-	6.4e-07	28.9	0.0	1.1e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	BlaR1	peptidase	M56
Phage_holin_3_6	PF07332.11	gi|564288603|ref|YP_008874811.1|	-	0.038	14.0	15.7	0.053	13.6	4.9	2.4	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
LapA_dom	PF06305.11	gi|564288603|ref|YP_008874811.1|	-	0.2	11.5	1.3	7.5	6.5	0.1	2.9	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
FAA_hydrolase	PF01557.18	gi|564288604|ref|YP_008874812.1|	-	5.6e-49	166.8	0.0	6.6e-49	166.5	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
UvrC_HhH_N	PF08459.11	gi|564288605|ref|YP_008874813.1|	-	1e-42	145.7	0.0	2e-42	144.7	0.0	1.5	1	0	0	1	1	1	1	UvrC	Helix-hairpin-helix	N-terminal
HHH_5	PF14520.6	gi|564288605|ref|YP_008874813.1|	-	6.9e-12	45.8	0.0	1.7e-11	44.5	0.0	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|564288605|ref|YP_008874813.1|	-	1.7e-10	40.8	0.0	3.9e-10	39.7	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|564288605|ref|YP_008874813.1|	-	1.5e-09	37.2	0.1	1.2e-05	24.9	0.0	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	motif
UVR	PF02151.19	gi|564288605|ref|YP_008874813.1|	-	1.1e-08	34.6	3.9	2.6e-08	33.3	1.5	2.4	2	0	0	2	2	2	1	UvrB/uvrC	motif
GIY-YIG	PF01541.24	gi|564288605|ref|YP_008874813.1|	-	2.4e-07	30.9	0.0	4.1e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
5_3_exonuc	PF01367.20	gi|564288605|ref|YP_008874813.1|	-	0.00084	19.9	0.0	0.016	15.8	0.0	2.8	2	1	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_8	PF14716.6	gi|564288605|ref|YP_008874813.1|	-	0.0021	18.4	0.0	1.1	9.7	0.0	2.8	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HHH_3	PF12836.7	gi|564288605|ref|YP_008874813.1|	-	0.018	15.3	0.0	0.49	10.7	0.0	2.4	1	1	1	2	2	2	0	Helix-hairpin-helix	motif
CsgA	PF17334.2	gi|564288605|ref|YP_008874813.1|	-	0.11	13.2	0.0	0.35	11.6	0.0	1.8	1	0	0	1	1	1	0	Minor	curli	fiber	component	A
Hairy_orange	PF07527.13	gi|564288605|ref|YP_008874813.1|	-	0.14	12.3	0.0	0.43	10.8	0.0	1.8	2	0	0	2	2	1	0	Hairy	Orange
IMS_HHH	PF11798.8	gi|564288605|ref|YP_008874813.1|	-	0.17	12.3	0.0	0.69	10.4	0.0	2.0	2	0	0	2	2	2	0	IMS	family	HHH	motif
DUF3493	PF11998.8	gi|564288606|ref|YP_008874814.1|	-	0.054	13.7	1.3	0.054	13.7	1.3	1.8	1	1	1	2	2	2	0	Low	psii	accumulation1	/	Rep27
UPF0547	PF10571.9	gi|564288607|ref|YP_008874815.1|	-	0.00023	21.1	2.4	0.00037	20.5	2.4	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.6	gi|564288607|ref|YP_008874815.1|	-	0.00062	19.4	0.5	0.00089	18.9	0.5	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|564288607|ref|YP_008874815.1|	-	0.0038	16.6	1.4	0.0061	15.9	1.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564288607|ref|YP_008874815.1|	-	0.0039	17.2	1.5	0.0056	16.7	1.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Cys_rich_CPXG	PF14255.6	gi|564288607|ref|YP_008874815.1|	-	0.056	13.4	1.7	6.7	6.7	0.0	2.2	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
zf-C2H2_4	PF13894.6	gi|564288607|ref|YP_008874815.1|	-	0.14	13.1	1.7	8.7	7.5	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_15	PF17032.5	gi|564288607|ref|YP_008874815.1|	-	0.18	12.5	1.5	0.29	11.9	1.5	1.3	1	0	0	1	1	1	0	zinc-ribbon	family
DUF588	PF04535.12	gi|564288607|ref|YP_008874815.1|	-	0.69	9.7	5.2	1.2	9.0	5.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF588)
Aminotran_5	PF00266.19	gi|564288608|ref|YP_008874817.1|	-	1.7e-27	96.4	0.0	2.1e-27	96.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
EspB	PF05802.11	gi|564288608|ref|YP_008874817.1|	-	0.0056	16.7	0.0	0.051	13.6	0.0	2.5	3	1	1	4	4	4	1	Enterobacterial	EspB	protein
TipAS	PF07739.13	gi|564288608|ref|YP_008874817.1|	-	0.17	12.5	2.6	0.54	10.8	0.8	2.5	1	1	1	2	2	2	0	TipAS	antibiotic-recognition	domain
HalOD1	PF18545.1	gi|564288609|ref|YP_008874818.1|	-	1.7e-23	82.7	0.3	1.9e-23	82.5	0.3	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
MCPsignal	PF00015.21	gi|564288610|ref|YP_008874819.1|	-	4.7e-36	124.2	17.3	4.7e-36	124.2	17.3	5.4	3	1	3	6	6	4	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|564288610|ref|YP_008874819.1|	-	2e-12	47.3	0.8	2e-12	47.3	0.8	5.8	6	1	0	6	6	5	2	HAMP	domain
BLOC1_2	PF10046.9	gi|564288610|ref|YP_008874819.1|	-	6.4e-07	29.6	17.8	0.012	15.9	0.1	5.5	4	1	2	6	6	6	3	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Laminin_II	PF06009.12	gi|564288610|ref|YP_008874819.1|	-	1e-06	28.8	29.1	0.0054	16.8	1.2	5.1	3	2	2	5	5	5	3	Laminin	Domain	II
DUF948	PF06103.11	gi|564288610|ref|YP_008874819.1|	-	5.2e-06	26.6	39.3	0.0074	16.5	2.6	7.0	3	2	3	6	6	6	3	Bacterial	protein	of	unknown	function	(DUF948)
IFT57	PF10498.9	gi|564288610|ref|YP_008874819.1|	-	2.9e-05	23.2	10.6	0.0046	16.0	1.3	3.2	3	0	0	3	3	3	2	Intra-flagellar	transport	protein	57
Mod_r	PF07200.13	gi|564288610|ref|YP_008874819.1|	-	7.2e-05	22.9	6.7	0.87	9.7	0.2	4.3	3	1	1	4	4	4	1	Modifier	of	rudimentary	(Mod(r))	protein
DUF1664	PF07889.12	gi|564288610|ref|YP_008874819.1|	-	0.00035	20.6	24.4	0.19	11.7	1.3	5.4	3	2	4	7	7	7	2	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|564288610|ref|YP_008874819.1|	-	0.00071	18.6	21.3	0.02	13.8	2.5	3.3	3	1	0	3	3	3	2	Spc7	kinetochore	protein
MAD	PF05557.13	gi|564288610|ref|YP_008874819.1|	-	0.00077	18.0	3.7	0.00077	18.0	3.7	2.9	2	1	1	3	3	3	1	Mitotic	checkpoint	protein
AAA_13	PF13166.6	gi|564288610|ref|YP_008874819.1|	-	0.0012	17.6	20.1	0.018	13.7	3.5	2.1	1	1	0	2	2	2	2	AAA	domain
KASH_CCD	PF14662.6	gi|564288610|ref|YP_008874819.1|	-	0.0032	17.3	0.8	0.0032	17.3	0.8	4.2	3	1	0	4	4	4	1	Coiled-coil	region	of	CCDC155	or	KASH
ATP-synt_B	PF00430.18	gi|564288610|ref|YP_008874819.1|	-	0.0042	17.2	4.8	0.0042	17.2	4.8	4.5	2	2	2	4	4	3	1	ATP	synthase	B/B'	CF(0)
NPV_P10	PF05531.12	gi|564288610|ref|YP_008874819.1|	-	0.0047	17.4	23.7	0.7	10.4	2.1	5.0	2	1	2	4	4	3	2	Nucleopolyhedrovirus	P10	protein
TPR_MLP1_2	PF07926.12	gi|564288610|ref|YP_008874819.1|	-	0.0058	16.7	28.6	0.18	11.9	1.6	4.9	3	2	0	4	4	4	1	TPR/MLP1/MLP2-like	protein
RPW8	PF05659.11	gi|564288610|ref|YP_008874819.1|	-	0.0077	15.9	3.7	15	5.3	0.0	5.1	3	2	2	6	6	6	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Alanine_zipper	PF11839.8	gi|564288610|ref|YP_008874819.1|	-	0.014	15.8	6.3	0.014	15.8	6.3	6.6	6	2	1	7	7	4	0	Alanine-zipper,	major	outer	membrane	lipoprotein
Laminin_I	PF06008.14	gi|564288610|ref|YP_008874819.1|	-	0.021	14.5	21.2	0.75	9.5	4.6	4.1	3	1	1	4	4	4	0	Laminin	Domain	I
TolA_bind_tri	PF16331.5	gi|564288610|ref|YP_008874819.1|	-	0.028	14.5	0.2	0.028	14.5	0.2	4.6	5	1	0	6	6	5	0	TolA	binding	protein	trimerisation
Fib_alpha	PF08702.10	gi|564288610|ref|YP_008874819.1|	-	0.029	14.5	6.7	4.1	7.6	0.1	4.0	3	2	1	4	4	4	0	Fibrinogen	alpha/beta	chain	family
UPF0242	PF06785.11	gi|564288610|ref|YP_008874819.1|	-	0.03	14.4	8.1	5.6	7.0	0.0	4.0	3	1	1	4	4	4	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
EzrA	PF06160.12	gi|564288610|ref|YP_008874819.1|	-	0.03	12.5	19.0	0.063	11.5	0.8	3.8	2	1	1	3	3	3	0	Septation	ring	formation	regulator,	EzrA
Sec8_exocyst	PF04048.14	gi|564288610|ref|YP_008874819.1|	-	0.034	14.0	5.0	11	5.9	0.0	4.3	4	2	1	5	5	4	0	Sec8	exocyst	complex	component	specific	domain
APG6_N	PF17675.1	gi|564288610|ref|YP_008874819.1|	-	0.037	14.6	24.6	0.35	11.4	0.6	4.2	3	1	1	4	4	4	0	Apg6	coiled-coil	region
CENP-H	PF05837.12	gi|564288610|ref|YP_008874819.1|	-	0.041	14.3	19.5	0.048	14.1	1.6	4.8	2	1	1	4	4	4	0	Centromere	protein	H	(CENP-H)
Seryl_tRNA_N	PF02403.22	gi|564288610|ref|YP_008874819.1|	-	0.046	14.0	17.6	1.1	9.6	0.4	5.1	3	2	2	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
Prominin	PF05478.11	gi|564288610|ref|YP_008874819.1|	-	0.054	11.5	7.5	0.6	8.0	0.5	2.6	2	1	0	2	2	2	0	Prominin
DUF2913	PF11140.8	gi|564288610|ref|YP_008874819.1|	-	0.057	13.2	3.4	2.7	7.7	0.0	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2913)
Fzo_mitofusin	PF04799.13	gi|564288610|ref|YP_008874819.1|	-	0.079	12.5	12.4	12	5.4	0.2	4.7	3	2	1	5	5	5	0	fzo-like	conserved	region
GldM_N	PF12081.8	gi|564288610|ref|YP_008874819.1|	-	0.081	13.0	18.0	1	9.4	0.0	4.4	1	1	2	4	4	4	0	GldM	N-terminal	domain
TMPIT	PF07851.13	gi|564288610|ref|YP_008874819.1|	-	0.094	11.9	4.9	34	3.5	0.0	3.9	3	1	1	4	4	4	0	TMPIT-like	protein
BAR	PF03114.18	gi|564288610|ref|YP_008874819.1|	-	0.13	11.9	14.8	0.66	9.6	3.4	3.7	3	1	0	3	3	3	0	BAR	domain
Arfaptin	PF06456.13	gi|564288610|ref|YP_008874819.1|	-	0.14	11.7	3.7	0.26	10.8	0.0	2.6	2	1	0	2	2	2	0	Arfaptin-like	domain
DegS	PF05384.11	gi|564288610|ref|YP_008874819.1|	-	0.16	11.5	16.2	0.4	10.2	0.3	4.7	3	2	0	4	4	4	0	Sensor	protein	DegS
Jnk-SapK_ap_N	PF09744.9	gi|564288610|ref|YP_008874819.1|	-	0.16	12.2	12.4	9.2	6.5	0.4	4.1	3	1	1	4	4	4	0	JNK_SAPK-associated	protein-1
Hormone_1	PF00103.20	gi|564288610|ref|YP_008874819.1|	-	0.18	11.5	1.6	0.46	10.2	0.4	2.2	2	1	0	2	2	2	0	Somatotropin	hormone	family
BAR_3	PF16746.5	gi|564288610|ref|YP_008874819.1|	-	0.51	10.0	3.5	3.4	7.3	0.0	3.2	3	1	0	3	3	3	0	BAR	domain	of	APPL	family
DUF4200	PF13863.6	gi|564288610|ref|YP_008874819.1|	-	0.53	10.7	16.3	2	8.8	0.3	4.3	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4200)
Golgin_A5	PF09787.9	gi|564288610|ref|YP_008874819.1|	-	0.55	9.6	19.2	0.16	11.4	1.4	2.9	2	1	0	2	2	2	0	Golgin	subfamily	A	member	5
Serine_rich	PF08824.10	gi|564288610|ref|YP_008874819.1|	-	0.6	10.1	15.1	0.17	11.9	0.4	3.7	3	1	1	4	4	4	0	Serine	rich	protein	interaction	domain
Prefoldin_2	PF01920.20	gi|564288610|ref|YP_008874819.1|	-	0.64	10.0	15.9	1.2	9.1	0.9	4.8	3	2	1	4	4	4	0	Prefoldin	subunit
COG2	PF06148.11	gi|564288610|ref|YP_008874819.1|	-	0.65	10.1	16.4	9.7	6.3	0.2	5.7	3	2	2	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Sec34	PF04136.15	gi|564288610|ref|YP_008874819.1|	-	0.88	9.4	13.7	10	6.0	0.0	5.3	4	2	2	6	6	6	0	Sec34-like	family
BAR_2	PF10455.9	gi|564288610|ref|YP_008874819.1|	-	1.2	8.2	12.8	0.021	14.0	1.4	2.9	2	1	1	3	3	3	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
T2SSF	PF00482.23	gi|564288610|ref|YP_008874819.1|	-	1.3	8.9	16.2	4	7.4	0.8	4.5	3	1	0	3	3	3	0	Type	II	secretion	system	(T2SS),	protein	F
HMMR_N	PF15905.5	gi|564288610|ref|YP_008874819.1|	-	1.4	8.3	15.4	1.9	7.9	1.9	3.5	2	1	2	4	4	4	0	Hyaluronan	mediated	motility	receptor	N-terminal
CENP-F_leu_zip	PF10473.9	gi|564288610|ref|YP_008874819.1|	-	1.8	8.6	21.9	0.38	10.8	0.5	4.5	4	2	1	5	5	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF4795	PF16043.5	gi|564288610|ref|YP_008874819.1|	-	2.1	7.9	20.8	4.8	6.7	2.3	3.5	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4795)
Cep57_CLD_2	PF14197.6	gi|564288610|ref|YP_008874819.1|	-	2.7	8.2	16.9	2	8.6	1.5	4.6	5	1	0	5	5	4	0	Centrosome	localisation	domain	of	PPC89
Snapin_Pallidin	PF14712.6	gi|564288610|ref|YP_008874819.1|	-	2.7	8.5	7.0	8	7.0	0.1	4.2	3	2	3	6	6	5	0	Snapin/Pallidin
DASH_Dad2	PF08654.10	gi|564288610|ref|YP_008874819.1|	-	2.9	8.4	18.0	0.84	10.1	0.9	4.7	2	1	1	4	4	4	0	DASH	complex	subunit	Dad2
DUF3450	PF11932.8	gi|564288610|ref|YP_008874819.1|	-	3.1	7.0	28.1	2.6	7.3	0.5	4.8	2	1	3	5	5	5	0	Protein	of	unknown	function	(DUF3450)
Baculo_PEP_C	PF04513.12	gi|564288610|ref|YP_008874819.1|	-	4.6	7.3	24.7	2.8	8.0	4.2	4.5	3	2	2	5	5	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
HOOK	PF05622.12	gi|564288610|ref|YP_008874819.1|	-	5	5.1	16.4	0.14	10.3	2.4	3.1	2	1	0	3	3	3	0	HOOK	protein
Tweety	PF04906.13	gi|564288610|ref|YP_008874819.1|	-	5	5.7	15.1	1.9	7.0	0.7	3.4	2	1	2	4	4	4	0	Tweety
HIP1_clath_bdg	PF16515.5	gi|564288610|ref|YP_008874819.1|	-	5.3	7.7	18.5	14	6.4	0.2	4.8	3	2	0	4	4	4	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
DUF16	PF01519.16	gi|564288610|ref|YP_008874819.1|	-	5.6	7.5	16.2	3.5	8.2	0.3	4.3	3	2	3	6	6	5	0	Protein	of	unknown	function	DUF16
DUF5082	PF16888.5	gi|564288610|ref|YP_008874819.1|	-	6	7.2	11.7	5	7.4	0.5	4.1	2	2	3	5	5	5	0	Domain	of	unknown	function	(DUF5082)
Syntaxin-6_N	PF09177.11	gi|564288610|ref|YP_008874819.1|	-	6.5	7.4	23.2	0.97	10.0	0.1	5.2	2	2	2	4	4	3	0	Syntaxin	6,	N-terminal
FlaC_arch	PF05377.11	gi|564288610|ref|YP_008874819.1|	-	8.4	6.9	17.1	7.9	7.0	0.2	5.8	6	2	1	7	7	5	0	Flagella	accessory	protein	C	(FlaC)
ZapB	PF06005.12	gi|564288610|ref|YP_008874819.1|	-	8.4	6.9	16.2	6.4	7.3	0.1	4.8	3	1	2	5	5	5	0	Cell	division	protein	ZapB
Bac_rhodopsin	PF01036.18	gi|564288611|ref|YP_008874820.1|	-	4.9e-23	81.9	17.4	6.1e-23	81.6	17.4	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
DNA_ligase_aden	PF01653.18	gi|564288612|ref|YP_008874821.1|	-	5.9e-111	370.6	0.0	7.6e-111	370.2	0.0	1.1	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	adenylation	domain
DNA_ligase_OB	PF03120.16	gi|564288612|ref|YP_008874821.1|	-	1.1e-28	98.9	2.6	2.2e-28	98.0	2.6	1.5	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	OB-fold	domain
HHH_2	PF12826.7	gi|564288612|ref|YP_008874821.1|	-	5e-17	61.7	0.5	6.9e-15	54.9	0.1	3.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|564288612|ref|YP_008874821.1|	-	8.9e-15	55.0	0.0	1.5e-07	31.9	0.0	2.6	2	0	0	2	2	2	2	Helix-hairpin-helix	domain
BRCT	PF00533.26	gi|564288612|ref|YP_008874821.1|	-	9.6e-13	48.3	0.0	1.9e-12	47.4	0.0	1.4	1	0	0	1	1	1	1	BRCA1	C	Terminus	(BRCT)	domain
DNA_ligase_ZBD	PF03119.16	gi|564288612|ref|YP_008874821.1|	-	2.3e-05	24.3	2.4	8e-05	22.6	2.4	2.0	1	0	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
HHH	PF00633.23	gi|564288612|ref|YP_008874821.1|	-	0.00086	19.1	0.0	0.23	11.4	0.0	3.9	4	0	0	4	4	4	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.20	gi|564288612|ref|YP_008874821.1|	-	0.002	18.7	0.0	0.027	15.1	0.0	2.7	2	1	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
Response_reg	PF00072.24	gi|564288613|ref|YP_008874822.1|	-	6.9e-21	74.5	0.0	1.2e-20	73.7	0.0	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_3	PF08447.12	gi|564288613|ref|YP_008874822.1|	-	6.2e-15	55.3	0.5	5.4e-14	52.2	0.0	2.7	3	0	0	3	3	3	1	PAS	fold
PAS_4	PF08448.10	gi|564288613|ref|YP_008874822.1|	-	7.2e-10	39.1	3.7	1.7e-08	34.7	0.0	3.0	4	0	0	4	4	4	1	PAS	fold
PAS_8	PF13188.7	gi|564288613|ref|YP_008874822.1|	-	9.2e-06	25.6	0.0	3.6e-05	23.7	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
PAS_9	PF13426.7	gi|564288613|ref|YP_008874822.1|	-	3.3e-05	24.1	0.0	0.0022	18.2	0.0	2.5	2	0	0	2	2	2	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|564288613|ref|YP_008874822.1|	-	0.0047	17.2	0.0	0.0093	16.2	0.0	1.5	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS	PF00989.25	gi|564288613|ref|YP_008874822.1|	-	0.019	15.0	0.0	0.24	11.4	0.0	2.7	3	0	0	3	3	3	0	PAS	fold
ABC2_membrane_2	PF12679.7	gi|564291279|ref|YP_008874823.1|	-	1.4e-09	37.7	0.0	1.5e-09	37.6	0.0	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|564291280|ref|YP_008874824.1|	-	4.4e-45	154.2	17.8	5.7e-45	153.8	17.8	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_5	PF13346.6	gi|564291280|ref|YP_008874824.1|	-	4.7e-07	29.6	3.3	4.7e-07	29.6	3.3	1.9	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|564291280|ref|YP_008874824.1|	-	9.1e-06	25.2	8.7	9.1e-06	25.2	8.7	1.7	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_4	PF12730.7	gi|564291280|ref|YP_008874824.1|	-	2.2e-05	24.5	7.7	2.2e-05	24.5	7.7	1.8	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|564291280|ref|YP_008874824.1|	-	9.1e-05	21.7	10.3	0.00014	21.1	10.3	1.4	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
DUF3464	PF11947.8	gi|564291280|ref|YP_008874824.1|	-	0.26	11.0	0.8	0.68	9.7	0.8	1.7	1	0	0	1	1	1	0	Photosynthesis	affected	mutant	68
ABC_tran	PF00005.27	gi|564288614|ref|YP_008874825.1|	-	3.1e-29	102.2	0.0	5e-29	101.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288614|ref|YP_008874825.1|	-	6.8e-12	45.8	0.1	2.4e-07	30.9	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|564288614|ref|YP_008874825.1|	-	1.6e-07	31.9	0.0	4.6e-07	30.5	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|564288614|ref|YP_008874825.1|	-	0.0036	17.8	0.7	0.0073	16.8	0.7	1.4	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564288614|ref|YP_008874825.1|	-	0.0036	16.8	0.1	0.76	9.2	0.0	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.17	gi|564288614|ref|YP_008874825.1|	-	0.0041	16.9	0.0	0.13	12.0	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|564288614|ref|YP_008874825.1|	-	0.012	15.3	0.1	0.09	12.5	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564288614|ref|YP_008874825.1|	-	0.015	15.3	0.1	1.2	9.2	0.0	2.5	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_29	PF13555.6	gi|564288614|ref|YP_008874825.1|	-	0.032	14.0	0.1	0.075	12.8	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288614|ref|YP_008874825.1|	-	0.085	12.8	0.1	0.17	11.8	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_10	PF12846.7	gi|564288614|ref|YP_008874825.1|	-	0.1	11.5	0.0	0.19	10.6	0.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
AAA_27	PF13514.6	gi|564288614|ref|YP_008874825.1|	-	0.14	11.7	0.1	0.52	9.9	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|564288614|ref|YP_008874825.1|	-	0.25	11.0	0.0	1.7	8.2	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
Beta_helix	PF13229.6	gi|564288616|ref|YP_008874827.1|	-	4.6e-23	81.8	16.2	1e-20	74.2	2.0	3.0	1	1	2	3	3	3	3	Right	handed	beta	helix	region
NosD	PF05048.13	gi|564288616|ref|YP_008874827.1|	-	4.6e-09	35.9	2.9	3.4e-06	26.5	0.3	2.7	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Transglut_core	PF01841.19	gi|564288617|ref|YP_008874828.1|	-	1.4e-29	102.8	1.2	5.9e-29	100.8	0.0	2.5	3	0	0	3	3	3	1	Transglutaminase-like	superfamily
DUF3488	PF11992.8	gi|564288617|ref|YP_008874828.1|	-	0.00015	20.8	0.7	0.00015	20.8	0.7	2.3	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF3488)
DUF4129	PF13559.6	gi|564288617|ref|YP_008874828.1|	-	0.00038	20.7	4.8	0.00038	20.7	4.8	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4129)
YtkA	PF13115.6	gi|564288617|ref|YP_008874828.1|	-	0.00071	20.1	2.5	1.3	9.6	0.0	3.8	3	0	0	3	3	3	2	YtkA-like
Transglut_core3	PF13471.6	gi|564288617|ref|YP_008874828.1|	-	0.0018	18.2	0.1	0.013	15.4	0.0	2.4	2	0	0	2	2	2	1	Transglutaminase-like	superfamily
Flp_Fap	PF04964.14	gi|564288618|ref|YP_008874829.1|	-	0.0053	16.6	1.0	0.015	15.2	1.0	1.8	1	0	0	1	1	1	1	Flp/Fap	pilin	component
Sporozoite_P67	PF05642.11	gi|564288618|ref|YP_008874829.1|	-	0.22	9.6	0.4	0.22	9.6	0.4	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
DUF58	PF01882.18	gi|564288619|ref|YP_008874830.1|	-	6.2e-17	61.7	0.1	1.8e-16	60.2	0.1	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|564288619|ref|YP_008874830.1|	-	1.7e-10	41.1	0.9	1.7e-10	41.1	0.9	2.7	3	1	1	4	4	4	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|564288619|ref|YP_008874830.1|	-	4.4e-08	33.3	0.5	1.4e-07	31.7	0.5	2.0	1	0	0	1	1	1	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
TRAP_beta	PF05753.14	gi|564288619|ref|YP_008874830.1|	-	1.2e-05	24.8	0.0	2e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Translocon-associated	protein	beta	(TRAPB)
CARDB	PF07705.11	gi|564288619|ref|YP_008874830.1|	-	0.0025	18.1	0.1	0.0055	16.9	0.1	1.6	1	0	0	1	1	1	1	CARDB
SHOCT	PF09851.9	gi|564288621|ref|YP_008874832.1|	-	4.4e-06	26.2	0.8	4.4e-06	26.2	0.8	1.8	2	0	0	2	2	2	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|564288621|ref|YP_008874832.1|	-	1.8e-05	24.7	2.4	3.4e-05	23.8	2.4	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
DUF3367	PF11847.8	gi|564288621|ref|YP_008874832.1|	-	0.24	9.2	2.3	0.31	8.9	2.3	1.1	1	0	0	1	1	1	0	Alpha-(1->3)-arabinofuranosyltransferase
GvpG	PF05120.12	gi|564288621|ref|YP_008874832.1|	-	1.1	9.3	5.9	0.78	9.8	4.2	1.6	1	1	0	1	1	1	0	Gas	vesicle	protein	G
PsbJ	PF01788.17	gi|564288621|ref|YP_008874832.1|	-	2	8.3	5.7	3.6	7.6	2.1	2.1	2	0	0	2	2	2	0	PsbJ
Multi_Drug_Res	PF00893.19	gi|564288622|ref|YP_008874833.1|	-	1e-25	90.2	1.4	1.4e-25	89.8	1.4	1.1	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.20	gi|564288622|ref|YP_008874833.1|	-	0.023	14.8	5.7	0.028	14.6	5.7	1.3	1	0	0	1	1	1	0	EamA-like	transporter	family
TrmB	PF01978.19	gi|564288623|ref|YP_008874834.1|	-	6.8e-20	70.7	0.0	1.7e-19	69.5	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564288623|ref|YP_008874834.1|	-	0.0012	18.6	0.0	0.0035	17.1	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288623|ref|YP_008874834.1|	-	0.0028	17.5	0.5	0.0061	16.4	0.0	1.9	2	0	0	2	2	2	1	MarR	family
SusD_RagB	PF07980.11	gi|564288623|ref|YP_008874834.1|	-	0.0043	16.7	0.0	0.0062	16.2	0.0	1.1	1	0	0	1	1	1	1	SusD	family
PadR	PF03551.14	gi|564288623|ref|YP_008874834.1|	-	0.063	13.3	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
E2F_TDP	PF02319.20	gi|564288623|ref|YP_008874834.1|	-	0.068	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	E2F/DP	family	winged-helix	DNA-binding	domain
HTH_CodY	PF08222.11	gi|564288623|ref|YP_008874834.1|	-	0.18	11.4	0.2	0.49	10.0	0.1	1.8	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
AAA_3	PF07726.11	gi|564288624|ref|YP_008874835.1|	-	3e-65	218.0	0.1	4.4e-65	217.4	0.1	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|564288624|ref|YP_008874835.1|	-	1.4e-14	53.7	1.5	2.5e-14	52.8	1.5	1.5	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|564288624|ref|YP_008874835.1|	-	3.3e-14	53.0	0.0	6.2e-14	52.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|564288624|ref|YP_008874835.1|	-	0.0002	21.8	0.0	0.00065	20.1	0.0	2.0	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|564288624|ref|YP_008874835.1|	-	0.00027	20.7	0.0	0.0014	18.4	0.0	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|564288624|ref|YP_008874835.1|	-	0.0027	16.8	0.0	0.0045	16.1	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|564288624|ref|YP_008874835.1|	-	0.032	14.0	0.0	0.38	10.5	0.0	2.2	1	1	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|564288624|ref|YP_008874835.1|	-	0.072	12.5	0.0	3	7.2	0.0	2.3	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
ATPase	PF06745.13	gi|564288624|ref|YP_008874835.1|	-	0.18	11.1	0.0	0.33	10.3	0.0	1.3	1	0	0	1	1	1	0	KaiC
Cys_Met_Meta_PP	PF01053.20	gi|564288625|ref|YP_008874836.1|	-	1e-130	435.7	0.0	1.2e-130	435.5	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.21	gi|564288625|ref|YP_008874836.1|	-	1.3e-10	41.1	0.0	1.9e-10	40.5	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|564288625|ref|YP_008874836.1|	-	1.1e-07	31.5	0.3	2.1e-07	30.6	0.3	1.4	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.19	gi|564288625|ref|YP_008874836.1|	-	9e-07	28.2	0.0	1.3e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Abhydrolase_1	PF00561.20	gi|564288626|ref|YP_008874837.1|	-	8.5e-31	107.5	0.4	1.1e-30	107.2	0.4	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564288626|ref|YP_008874837.1|	-	0.00043	19.6	0.0	0.0016	17.8	0.0	1.8	2	0	0	2	2	2	1	Serine	aminopeptidase,	S33
Peptidase_S9	PF00326.21	gi|564288626|ref|YP_008874837.1|	-	0.0005	19.6	0.2	1.1	8.6	0.1	2.6	2	1	0	2	2	2	2	Prolyl	oligopeptidase	family
GRA6	PF05084.13	gi|564288626|ref|YP_008874837.1|	-	0.049	13.6	0.0	0.099	12.6	0.0	1.4	1	0	0	1	1	1	0	Granule	antigen	protein	(GRA6)
zf-ribbon_3	PF13248.6	gi|564288627|ref|YP_008874838.1|	-	0.0093	15.3	2.8	1.3	8.5	1.0	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
HypA	PF01155.19	gi|564288627|ref|YP_008874838.1|	-	0.01	15.8	0.1	0.012	15.6	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|564288627|ref|YP_008874838.1|	-	0.031	14.0	0.4	0.031	14.0	0.4	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Anti-TRAP	PF15777.5	gi|564288627|ref|YP_008874838.1|	-	0.95	9.5	3.8	1.7	8.7	3.8	1.4	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HalOD2	PF18547.1	gi|564288627|ref|YP_008874838.1|	-	1.9	8.4	9.0	2	8.4	0.2	3.1	3	0	0	3	3	3	0	Halobacterial	output	domain	2
HscB_4_cys	PF18256.1	gi|564288627|ref|YP_008874838.1|	-	2.5	8.0	7.2	18	5.3	7.2	2.3	1	1	0	1	1	1	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
ApbA	PF02558.16	gi|564288629|ref|YP_008874840.1|	-	2.4e-31	108.4	0.0	4.6e-31	107.5	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ApbA_C	PF08546.11	gi|564288629|ref|YP_008874840.1|	-	1.4e-30	106.0	0.3	2.2e-30	105.4	0.3	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
F420_oxidored	PF03807.17	gi|564288629|ref|YP_008874840.1|	-	0.0021	18.6	0.0	0.0068	17.0	0.0	1.9	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|564288629|ref|YP_008874840.1|	-	0.041	14.1	0.1	0.097	12.9	0.1	1.8	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_8	PF13450.6	gi|564288629|ref|YP_008874840.1|	-	0.071	13.4	0.5	0.53	10.5	0.2	2.3	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564288629|ref|YP_008874840.1|	-	0.071	12.7	4.7	0.14	11.7	4.7	1.7	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
MR_MLE_C	PF13378.6	gi|564288630|ref|YP_008874841.1|	-	1.6e-64	217.5	1.1	2.2e-64	217.0	1.1	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564288630|ref|YP_008874841.1|	-	1.9e-26	92.6	0.0	3.7e-26	91.7	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
DUF1485	PF07364.12	gi|564288630|ref|YP_008874841.1|	-	0.017	14.4	0.1	0.042	13.1	0.0	1.6	2	0	0	2	2	2	0	Metallopeptidase	family	M81
Ku_C	PF03730.14	gi|564288630|ref|YP_008874841.1|	-	0.1	13.3	0.0	0.27	11.9	0.0	1.7	1	0	0	1	1	1	0	Ku70/Ku80	C-terminal	arm
DUF502	PF04367.13	gi|564288631|ref|YP_008874842.1|	-	9.8e-18	64.0	0.0	9.8e-18	64.0	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
Fijivirus_P9-2	PF06837.11	gi|564288631|ref|YP_008874842.1|	-	0.14	11.6	0.1	0.19	11.2	0.1	1.3	1	0	0	1	1	1	0	Fijivirus	P9-2	protein
UBA_5	PF16577.5	gi|564288631|ref|YP_008874842.1|	-	0.16	12.1	0.0	0.29	11.3	0.0	1.4	1	0	0	1	1	1	0	UBA	domain
Sigma_reg_N	PF13800.6	gi|564288631|ref|YP_008874842.1|	-	4.3	7.7	5.6	6.4	7.1	0.2	2.9	3	0	0	3	3	3	0	Sigma	factor	regulator	N-terminal
ABC2_membrane_3	PF12698.7	gi|564288631|ref|YP_008874842.1|	-	9.4	5.2	9.9	14	4.6	9.9	1.2	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Aminotran_4	PF01063.19	gi|564288632|ref|YP_008874843.1|	-	2.8e-50	171.3	0.0	3.9e-50	170.8	0.0	1.2	1	0	0	1	1	1	1	Amino-transferase	class	IV
DHBP_synthase	PF00926.19	gi|564288634|ref|YP_008874845.1|	-	1.8e-59	200.5	0.2	2.1e-59	200.3	0.2	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
CTP-dep_RFKase	PF01982.16	gi|564288635|ref|YP_008874846.1|	-	1.5e-46	157.4	0.0	2.2e-46	156.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_20	PF12840.7	gi|564288635|ref|YP_008874846.1|	-	1.5e-07	31.3	0.8	3.4e-07	30.2	0.8	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288635|ref|YP_008874846.1|	-	2.5e-07	30.1	0.1	4.6e-07	29.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564288635|ref|YP_008874846.1|	-	4.1e-06	26.6	0.5	7.8e-06	25.7	0.5	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564288635|ref|YP_008874846.1|	-	2.4e-05	24.2	0.1	9.4e-05	22.3	0.0	1.9	1	1	1	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|564288635|ref|YP_008874846.1|	-	3e-05	23.8	0.0	5.8e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Fe_dep_repress	PF01325.19	gi|564288635|ref|YP_008874846.1|	-	3.5e-05	23.9	0.0	8.9e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.6	gi|564288635|ref|YP_008874846.1|	-	7.3e-05	22.7	0.3	0.00019	21.3	0.1	1.9	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564288635|ref|YP_008874846.1|	-	0.00011	22.0	1.0	0.00011	22.0	1.0	2.0	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288635|ref|YP_008874846.1|	-	0.0014	18.4	0.1	0.0014	18.4	0.1	1.8	2	0	0	2	2	1	1	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.6	gi|564288635|ref|YP_008874846.1|	-	0.0029	17.7	0.1	0.37	10.9	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288635|ref|YP_008874846.1|	-	0.009	16.5	0.1	0.017	15.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_10	PF04967.12	gi|564288635|ref|YP_008874846.1|	-	0.011	15.6	0.1	0.02	14.7	0.1	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_IclR	PF09339.10	gi|564288635|ref|YP_008874846.1|	-	0.011	15.5	1.0	0.03	14.1	1.0	1.7	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_36	PF13730.6	gi|564288635|ref|YP_008874846.1|	-	0.016	15.1	0.0	0.03	14.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|564288635|ref|YP_008874846.1|	-	0.032	14.2	0.1	0.061	13.3	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Rrf2	PF02082.20	gi|564288635|ref|YP_008874846.1|	-	0.038	14.3	0.0	0.076	13.4	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
TrmB	PF01978.19	gi|564288635|ref|YP_008874846.1|	-	0.075	12.9	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|564288635|ref|YP_008874846.1|	-	0.14	12.0	0.0	0.23	11.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Wyosine_form	PF08608.12	gi|564288637|ref|YP_008874848.1|	-	4.9e-20	71.6	0.1	1.1e-19	70.5	0.1	1.6	1	0	0	1	1	1	1	Wyosine	base	formation
Radical_SAM	PF04055.21	gi|564288637|ref|YP_008874848.1|	-	8.7e-19	68.5	0.4	1.7e-18	67.5	0.4	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
Zn-ribbon_8	PF09723.10	gi|564291281|ref|YP_008874850.1|	-	1.3e-08	34.8	1.7	1.6e-08	34.5	1.7	1.1	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|564291281|ref|YP_008874850.1|	-	3.5e-05	23.8	0.3	3.8e-05	23.7	0.3	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Nudix_N_2	PF14803.6	gi|564291281|ref|YP_008874850.1|	-	0.00033	20.5	2.1	0.017	15.0	0.1	2.1	2	0	0	2	2	2	1	Nudix	N-terminal
zf-C2H2	PF00096.26	gi|564291281|ref|YP_008874850.1|	-	0.0028	18.0	0.5	0.27	11.8	0.1	2.2	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
DZR	PF12773.7	gi|564291281|ref|YP_008874850.1|	-	0.004	17.1	0.6	0.0054	16.7	0.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|564291281|ref|YP_008874850.1|	-	0.0052	16.4	1.3	1.3	8.6	0.1	2.2	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zf-RING_7	PF02591.15	gi|564291281|ref|YP_008874850.1|	-	0.0062	16.7	0.5	1	9.6	0.1	2.2	2	0	0	2	2	2	1	C4-type	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|564291281|ref|YP_008874850.1|	-	0.0089	15.7	2.6	0.31	10.8	0.1	2.2	2	0	0	2	2	2	1	Rubredoxin	metal	binding	domain
Zn_Tnp_IS1	PF03811.13	gi|564291281|ref|YP_008874850.1|	-	0.0097	15.6	4.6	0.21	11.3	1.4	2.1	2	0	0	2	2	2	1	InsA	N-terminal	domain
zf-ribbon_3	PF13248.6	gi|564291281|ref|YP_008874850.1|	-	0.011	15.1	3.0	0.65	9.5	3.0	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
ADK_lid	PF05191.14	gi|564291281|ref|YP_008874850.1|	-	0.014	15.4	3.1	0.29	11.1	0.3	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
DNA_ligase_ZBD	PF03119.16	gi|564291281|ref|YP_008874850.1|	-	0.023	14.7	1.5	0.023	14.7	1.5	2.0	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
A2L_zn_ribbon	PF08792.10	gi|564291281|ref|YP_008874850.1|	-	0.026	14.3	0.4	2.1	8.2	0.0	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_5	PF13719.6	gi|564291281|ref|YP_008874850.1|	-	0.038	13.7	2.8	0.21	11.4	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564291281|ref|YP_008874850.1|	-	0.039	13.7	2.4	1.5	8.7	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|564291281|ref|YP_008874850.1|	-	0.039	13.9	2.5	2.5	8.1	2.5	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF4379	PF14311.6	gi|564291281|ref|YP_008874850.1|	-	0.04	14.3	0.0	0.048	14.0	0.0	1.2	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|564291281|ref|YP_008874850.1|	-	0.04	14.7	0.4	3.8	8.6	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Zn_Tnp_IS91	PF14319.6	gi|564291281|ref|YP_008874850.1|	-	0.042	13.9	0.1	0.047	13.7	0.1	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zf-trcl	PF13451.6	gi|564291281|ref|YP_008874850.1|	-	0.051	13.5	3.0	2.3	8.2	1.0	2.6	2	1	1	3	3	3	0	Probable	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|564291281|ref|YP_008874850.1|	-	0.058	13.2	0.4	2	8.3	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-IS66	PF13005.7	gi|564291281|ref|YP_008874850.1|	-	0.068	13.6	3.7	1.3	9.5	0.5	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-Mss51	PF13824.6	gi|564291281|ref|YP_008874850.1|	-	0.069	13.3	3.4	2	8.6	0.2	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Rubredoxin	PF00301.20	gi|564291281|ref|YP_008874850.1|	-	0.077	13.0	2.0	1.9	8.6	0.2	2.1	1	1	1	2	2	2	0	Rubredoxin
Prok-RING_1	PF14446.6	gi|564291281|ref|YP_008874850.1|	-	0.087	12.8	3.0	0.13	12.2	3.0	1.3	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
PhnA_Zn_Ribbon	PF08274.12	gi|564291281|ref|YP_008874850.1|	-	0.11	12.5	1.3	10	6.2	0.0	2.1	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
CpXC	PF14353.6	gi|564291281|ref|YP_008874850.1|	-	0.11	12.5	2.6	4.4	7.4	0.2	2.1	1	1	1	2	2	2	0	CpXC	protein
TF_Zn_Ribbon	PF08271.12	gi|564291281|ref|YP_008874850.1|	-	0.13	11.8	5.4	2.3	7.8	5.9	2.1	1	1	1	2	2	2	0	TFIIB	zinc-binding
DUF35_N	PF12172.8	gi|564291281|ref|YP_008874850.1|	-	0.13	12.1	4.2	5.3	7.0	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_L37ae	PF01780.19	gi|564291281|ref|YP_008874850.1|	-	0.18	11.9	0.9	0.6	10.2	0.9	1.7	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
OrfB_Zn_ribbon	PF07282.11	gi|564291281|ref|YP_008874850.1|	-	0.18	11.8	2.9	1.3	9.0	2.6	1.9	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF2072	PF09845.9	gi|564291281|ref|YP_008874850.1|	-	0.22	11.8	0.7	0.27	11.5	0.7	1.1	1	0	0	1	1	1	0	Zn-ribbon	containing	protein
UPF0547	PF10571.9	gi|564291281|ref|YP_008874850.1|	-	0.3	11.2	6.6	3.9	7.6	0.3	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-tcix	PF14952.6	gi|564291281|ref|YP_008874850.1|	-	0.62	9.7	3.0	8.7	6.1	0.9	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DUF1936	PF09151.10	gi|564291281|ref|YP_008874850.1|	-	1.6	8.7	4.9	2.9	7.9	0.3	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1936)
YhfH	PF14149.6	gi|564291281|ref|YP_008874850.1|	-	3.4	7.7	5.9	16	5.6	0.3	2.2	1	1	1	2	2	2	0	YhfH-like	protein
CMD	PF02627.20	gi|564288639|ref|YP_008874851.1|	-	5.6e-11	42.4	0.4	1.1e-10	41.4	0.4	1.6	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
DUF1440	PF07274.12	gi|564288640|ref|YP_008874852.1|	-	0.33	11.3	4.7	0.42	11.0	2.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1440)
Chloroplast_duf	PF14476.6	gi|564288640|ref|YP_008874852.1|	-	0.68	8.8	2.6	0.91	8.4	2.6	1.1	1	0	0	1	1	1	0	Petal	formation-expressed
TrmB	PF01978.19	gi|564288641|ref|YP_008874853.1|	-	3.7e-08	33.1	0.0	5.3e-08	32.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|564288641|ref|YP_008874853.1|	-	1.1e-06	28.4	0.1	3.3e-05	23.7	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|564288641|ref|YP_008874853.1|	-	3.9e-06	26.6	0.0	1e-05	25.2	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564288641|ref|YP_008874853.1|	-	5.5e-06	26.3	0.3	1.6e-05	24.9	0.1	1.9	1	1	1	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288641|ref|YP_008874853.1|	-	3.5e-05	23.6	0.0	6.7e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564288641|ref|YP_008874853.1|	-	0.00058	19.4	0.0	0.00084	18.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.22	gi|564288641|ref|YP_008874853.1|	-	0.0011	18.8	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|564288641|ref|YP_008874853.1|	-	0.0011	18.5	0.2	0.0024	17.5	0.2	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_CodY	PF08222.11	gi|564288641|ref|YP_008874853.1|	-	0.0013	18.3	0.0	0.0023	17.5	0.0	1.3	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564288641|ref|YP_008874853.1|	-	0.0013	18.6	0.0	0.0023	17.9	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|564288641|ref|YP_008874853.1|	-	0.0014	18.4	0.0	0.0026	17.6	0.0	1.4	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_28	PF13518.6	gi|564288641|ref|YP_008874853.1|	-	0.017	15.2	0.0	0.037	14.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|564288641|ref|YP_008874853.1|	-	0.032	14.0	0.0	0.06	13.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.20	gi|564288641|ref|YP_008874853.1|	-	0.034	14.5	0.0	0.064	13.6	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_29	PF13551.6	gi|564288641|ref|YP_008874853.1|	-	0.048	13.7	0.0	0.087	12.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_11	PF08279.12	gi|564288641|ref|YP_008874853.1|	-	0.085	12.8	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
NifU	PF01106.17	gi|564288642|ref|YP_008874854.1|	-	1.3e-14	54.1	0.0	2.3e-14	53.3	0.0	1.5	1	0	0	1	1	1	1	NifU-like	domain
CarS-like	PF01864.17	gi|564288643|ref|YP_008874855.1|	-	1e-44	152.6	0.6	1.2e-44	152.3	0.6	1.1	1	0	0	1	1	1	1	CDP-archaeol	synthase
CTP_transf_1	PF01148.20	gi|564288643|ref|YP_008874855.1|	-	0.00078	19.3	2.9	0.00078	19.3	2.9	1.9	1	1	0	1	1	1	1	Cytidylyltransferase	family
Rick_17kDa_Anti	PF05433.15	gi|564288643|ref|YP_008874855.1|	-	1.2	9.1	20.8	1.2	9.0	7.9	4.4	3	2	0	3	3	3	0	Glycine	zipper	2TM	domain
Porphobil_deam	PF01379.20	gi|564288645|ref|YP_008874857.1|	-	3.8e-65	219.2	1.1	1.2e-51	175.1	0.8	2.2	2	0	0	2	2	2	2	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.15	gi|564288645|ref|YP_008874857.1|	-	3.1e-10	40.3	0.1	8.2e-10	38.9	0.1	1.7	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
Uds1	PF15456.6	gi|564288645|ref|YP_008874857.1|	-	1.6	8.9	6.0	0.11	12.6	0.6	1.8	2	0	0	2	2	2	0	Up-regulated	During	Septation
TP_methylase	PF00590.20	gi|564288646|ref|YP_008874858.1|	-	1.2e-55	188.8	0.7	1.4e-55	188.6	0.7	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
RFamide_26RFa	PF11109.8	gi|564288646|ref|YP_008874858.1|	-	0.21	12.1	0.0	0.35	11.4	0.0	1.3	1	0	0	1	1	1	0	Orexigenic	neuropeptide	Qrfp/P518
HEM4	PF02602.15	gi|564288647|ref|YP_008874859.1|	-	4.9e-43	147.1	1.4	5.8e-43	146.9	1.4	1.0	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
NMT1_3	PF16868.5	gi|564288647|ref|YP_008874859.1|	-	0.059	12.8	0.1	0.075	12.4	0.1	1.1	1	0	0	1	1	1	0	NMT1-like	family
PspA_IM30	PF04012.12	gi|564288648|ref|YP_008874860.1|	-	6.8e-29	101.0	24.3	8e-29	100.8	24.3	1.0	1	0	0	1	1	1	1	PspA/IM30	family
YabA	PF06156.13	gi|564288648|ref|YP_008874860.1|	-	0.00053	20.6	11.9	0.011	16.4	0.2	3.3	2	1	0	3	3	3	2	Initiation	control	protein	YabA
AAA_13	PF13166.6	gi|564288648|ref|YP_008874860.1|	-	0.0017	17.1	11.0	0.0021	16.8	11.0	1.1	1	0	0	1	1	1	1	AAA	domain
APG6_N	PF17675.1	gi|564288648|ref|YP_008874860.1|	-	0.01	16.3	24.2	0.11	13.1	1.2	3.2	2	1	1	3	3	3	0	Apg6	coiled-coil	region
DUF3450	PF11932.8	gi|564288648|ref|YP_008874860.1|	-	0.011	15.0	20.5	0.18	11.1	0.8	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
ZapB	PF06005.12	gi|564288648|ref|YP_008874860.1|	-	0.012	16.1	0.9	0.012	16.1	0.9	3.9	3	2	0	3	3	3	0	Cell	division	protein	ZapB
DUF3535	PF12054.8	gi|564288648|ref|YP_008874860.1|	-	0.014	14.7	3.8	0.02	14.2	3.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3535)
Snf7	PF03357.21	gi|564288648|ref|YP_008874860.1|	-	0.015	14.9	19.3	9.2	5.8	19.3	2.5	1	1	0	1	1	1	0	Snf7
Phage_GP20	PF06810.11	gi|564288648|ref|YP_008874860.1|	-	0.025	14.4	1.2	0.025	14.4	1.2	3.0	1	1	2	3	3	3	0	Phage	minor	structural	protein	GP20
FTA4	PF13093.6	gi|564288648|ref|YP_008874860.1|	-	0.031	14.1	13.7	0.064	13.1	4.5	2.5	1	1	1	2	2	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
Filament	PF00038.21	gi|564288648|ref|YP_008874860.1|	-	0.05	13.2	23.0	2.3	7.7	1.2	3.0	1	1	1	2	2	2	0	Intermediate	filament	protein
DUF1664	PF07889.12	gi|564288648|ref|YP_008874860.1|	-	0.13	12.3	8.8	0.13	12.3	1.6	3.0	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF1664)
TMPIT	PF07851.13	gi|564288648|ref|YP_008874860.1|	-	0.14	11.4	8.9	0.068	12.4	1.8	2.2	1	1	1	2	2	2	0	TMPIT-like	protein
DUF4407	PF14362.6	gi|564288648|ref|YP_008874860.1|	-	0.16	11.3	24.4	0.24	10.7	13.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Snapin_Pallidin	PF14712.6	gi|564288648|ref|YP_008874860.1|	-	0.28	11.6	10.4	0.11	12.9	1.7	3.4	2	1	1	3	3	3	0	Snapin/Pallidin
Prominin	PF05478.11	gi|564288648|ref|YP_008874860.1|	-	0.43	8.5	4.6	0.51	8.2	4.6	1.1	1	0	0	1	1	1	0	Prominin
DivIC	PF04977.15	gi|564288648|ref|YP_008874860.1|	-	0.52	10.1	23.4	0.51	10.1	0.9	4.4	2	1	3	5	5	5	0	Septum	formation	initiator
Spc7	PF08317.11	gi|564288648|ref|YP_008874860.1|	-	0.55	9.1	21.1	0.028	13.3	7.8	2.5	1	1	2	3	3	3	0	Spc7	kinetochore	protein
DUF4615	PF15393.6	gi|564288648|ref|YP_008874860.1|	-	0.88	10.1	6.0	0.38	11.3	3.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4615)
FapA	PF03961.13	gi|564288648|ref|YP_008874860.1|	-	1.2	7.6	10.9	0.82	8.2	4.4	2.3	1	1	2	3	3	3	0	Flagellar	Assembly	Protein	A
DUF4391	PF14335.6	gi|564288648|ref|YP_008874860.1|	-	1.4	8.6	7.6	0.84	9.3	0.6	2.7	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4391)
PolyA_pol	PF01743.20	gi|564288648|ref|YP_008874860.1|	-	1.6	9.2	13.7	0.14	12.6	3.2	3.3	1	1	3	4	4	4	0	Poly	A	polymerase	head	domain
DUF5082	PF16888.5	gi|564288648|ref|YP_008874860.1|	-	2.5	8.4	14.1	0.19	12.0	3.4	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF5082)
Herpes_UL6	PF01763.16	gi|564288648|ref|YP_008874860.1|	-	3.3	6.1	7.7	4.5	5.7	7.7	1.4	1	1	0	1	1	1	0	Herpesvirus	UL6	like
Seryl_tRNA_N	PF02403.22	gi|564288648|ref|YP_008874860.1|	-	7	6.9	14.0	1.6e+02	2.6	11.7	3.5	1	1	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DHR10	PF18595.1	gi|564288648|ref|YP_008874860.1|	-	8	6.5	30.4	1.3	9.1	3.1	3.4	2	1	0	3	3	3	0	Designed	helical	repeat	protein	10	domain
HsbA	PF12296.8	gi|564288649|ref|YP_008874861.1|	-	0.048	14.1	0.1	0.053	14.0	0.1	1.0	1	0	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
DHHA1	PF02272.19	gi|564288651|ref|YP_008874863.1|	-	3.2e-20	72.9	0.5	6.7e-20	71.9	0.5	1.5	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|564288651|ref|YP_008874863.1|	-	0.0087	16.3	0.2	0.015	15.5	0.2	1.4	1	0	0	1	1	1	1	DHH	family
Peptidase_C15	PF01470.17	gi|564288651|ref|YP_008874863.1|	-	0.14	12.3	0.0	0.26	11.4	0.0	1.3	1	0	0	1	1	1	0	Pyroglutamyl	peptidase
HTH_43	PF09904.9	gi|564288652|ref|YP_008874864.1|	-	0.021	14.8	0.0	0.029	14.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
ABC_transp_aux	PF09822.9	gi|564288654|ref|YP_008874866.1|	-	1.8e-05	24.4	0.0	2.5e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
DUF4350	PF14258.6	gi|564288654|ref|YP_008874866.1|	-	0.0024	18.2	3.0	0.011	16.2	0.1	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
Peptidase_S49	PF01343.18	gi|564288655|ref|YP_008874867.1|	-	1.1e-18	67.6	2.3	4.7e-11	42.9	0.4	2.3	2	0	0	2	2	2	2	Peptidase	family	S49
CLP_protease	PF00574.23	gi|564288655|ref|YP_008874867.1|	-	0.0003	20.7	0.1	0.0018	18.2	0.0	2.0	1	1	1	2	2	2	1	Clp	protease
SDH_sah	PF01972.16	gi|564288655|ref|YP_008874867.1|	-	0.00065	18.8	0.0	0.00093	18.3	0.0	1.1	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
RNA_pol_RpbG	PF16992.5	gi|564288655|ref|YP_008874867.1|	-	0.15	12.1	0.0	14	5.8	0.0	2.2	2	0	0	2	2	2	0	DNA-directed	RNA	polymerase,	subunit	G
Chlor_dismutase	PF06778.12	gi|564288656|ref|YP_008874868.1|	-	1.7e-66	223.6	0.2	3e-66	222.7	0.2	1.5	1	0	0	1	1	1	1	Chlorite	dismutase
ABM	PF03992.16	gi|564288656|ref|YP_008874868.1|	-	2.5e-09	37.1	0.1	2.5e-09	37.1	0.1	3.0	3	0	0	3	3	3	1	Antibiotic	biosynthesis	monooxygenase
DAPDH_C	PF16654.5	gi|564288656|ref|YP_008874868.1|	-	0.02	14.7	0.2	1.1	9.1	0.0	2.3	2	0	0	2	2	2	0	Diaminopimelic	acid	dehydrogenase	C-terminal	domain
Methyltransf_25	PF13649.6	gi|564288657|ref|YP_008874869.1|	-	1e-21	77.4	0.1	1.9e-21	76.6	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288657|ref|YP_008874869.1|	-	1.2e-19	70.7	0.1	2e-19	70.0	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288657|ref|YP_008874869.1|	-	8.4e-18	64.7	0.0	1.4e-17	64.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288657|ref|YP_008874869.1|	-	1.4e-17	63.9	0.0	1.8e-17	63.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288657|ref|YP_008874869.1|	-	2.6e-14	53.7	0.0	5.7e-14	52.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|564288657|ref|YP_008874869.1|	-	4.3e-09	36.4	0.0	6.9e-09	35.8	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|564288657|ref|YP_008874869.1|	-	6.3e-08	32.2	0.0	7.8e-08	31.9	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.14	gi|564288657|ref|YP_008874869.1|	-	2.2e-07	30.6	0.0	3.2e-07	30.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_32	PF13679.6	gi|564288657|ref|YP_008874869.1|	-	5.4e-07	29.7	0.0	8e-07	29.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
TPMT	PF05724.11	gi|564288657|ref|YP_008874869.1|	-	1.1e-06	28.5	0.0	6e-05	22.8	0.0	2.1	1	1	0	1	1	1	1	Thiopurine	S-methyltransferase	(TPMT)
RrnaAD	PF00398.20	gi|564288657|ref|YP_008874869.1|	-	9.4e-05	21.6	0.0	0.00012	21.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Pox_MCEL	PF03291.16	gi|564288657|ref|YP_008874869.1|	-	0.00054	19.2	0.0	0.04	13.0	0.0	2.0	1	1	1	2	2	2	1	mRNA	capping	enzyme
Ubie_methyltran	PF01209.18	gi|564288657|ref|YP_008874869.1|	-	0.0007	19.0	0.0	0.001	18.5	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.12	gi|564288657|ref|YP_008874869.1|	-	0.0013	18.4	0.0	0.002	17.8	0.0	1.4	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_2	PF00891.18	gi|564288657|ref|YP_008874869.1|	-	0.0019	17.5	0.1	0.0028	17.0	0.1	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
NodS	PF05401.11	gi|564288657|ref|YP_008874869.1|	-	0.0022	17.6	0.0	0.0031	17.1	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_9	PF08003.11	gi|564288657|ref|YP_008874869.1|	-	0.0029	16.6	0.0	0.0071	15.3	0.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_18	PF12847.7	gi|564288657|ref|YP_008874869.1|	-	0.0078	16.2	0.1	0.016	15.1	0.1	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.17	gi|564288657|ref|YP_008874869.1|	-	0.016	14.7	0.0	0.034	13.6	0.0	1.5	2	0	0	2	2	2	0	Putative	methyltransferase
PrmA	PF06325.13	gi|564288657|ref|YP_008874869.1|	-	0.017	14.6	0.1	0.022	14.2	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
TehB	PF03848.14	gi|564288657|ref|YP_008874869.1|	-	0.065	12.6	0.0	0.091	12.2	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
SnoaL_2	PF12680.7	gi|564288657|ref|YP_008874869.1|	-	0.069	13.8	1.2	0.56	10.9	0.2	2.6	1	1	2	3	3	3	0	SnoaL-like	domain
FtsJ	PF01728.19	gi|564288657|ref|YP_008874869.1|	-	0.07	13.2	0.0	0.39	10.8	0.0	1.9	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
YugN	PF08868.10	gi|564288657|ref|YP_008874869.1|	-	0.075	12.9	0.0	0.74	9.7	0.0	2.2	2	1	0	2	2	2	0	YugN-like	family
CheR	PF01739.18	gi|564288657|ref|YP_008874869.1|	-	0.077	12.5	0.0	3.3	7.1	0.0	2.4	1	1	1	2	2	2	0	CheR	methyltransferase,	SAM	binding	domain
Cons_hypoth95	PF03602.15	gi|564288657|ref|YP_008874869.1|	-	0.093	12.4	0.0	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
DREV	PF05219.12	gi|564288657|ref|YP_008874869.1|	-	0.098	11.7	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
NifU_N	PF01592.16	gi|564288658|ref|YP_008874870.1|	-	7.4e-29	100.5	0.1	8.4e-29	100.3	0.1	1.0	1	0	0	1	1	1	1	NifU-like	N	terminal	domain
DSPc	PF00782.20	gi|564288659|ref|YP_008874871.1|	-	3.9e-11	42.9	0.0	6.6e-11	42.1	0.0	1.3	1	1	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.27	gi|564288659|ref|YP_008874871.1|	-	0.00024	20.8	0.0	0.00024	20.7	0.0	1.1	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
CDKN3	PF05706.12	gi|564288659|ref|YP_008874871.1|	-	0.0034	17.1	0.0	0.0042	16.8	0.0	1.1	1	0	0	1	1	1	1	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
DUF442	PF04273.13	gi|564288659|ref|YP_008874871.1|	-	0.063	13.4	0.1	0.092	12.8	0.1	1.4	1	1	0	1	1	1	0	Putative	phosphatase	(DUF442)
Cupin_2	PF07883.11	gi|564288660|ref|YP_008874872.1|	-	9.5e-07	28.4	0.0	1.7e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	Cupin	domain
ARD	PF03079.14	gi|564288660|ref|YP_008874872.1|	-	0.056	13.6	0.0	0.091	12.9	0.0	1.3	1	0	0	1	1	1	0	ARD/ARD'	family
Aminotran_5	PF00266.19	gi|564288661|ref|YP_008874873.1|	-	1.5e-144	481.5	0.1	1.7e-144	481.4	0.1	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|564288661|ref|YP_008874873.1|	-	1.3e-10	41.1	0.5	2.3e-10	40.4	0.5	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|564288661|ref|YP_008874873.1|	-	4.2e-09	36.1	0.1	5.8e-09	35.6	0.1	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|564288661|ref|YP_008874873.1|	-	6.3e-09	35.5	0.0	1.7e-08	34.0	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Pyridoxal_deC	PF00282.19	gi|564288661|ref|YP_008874873.1|	-	0.00011	21.0	0.1	0.00041	19.2	0.1	1.7	2	0	0	2	2	2	1	Pyridoxal-dependent	decarboxylase	conserved	domain
SelA	PF03841.13	gi|564288661|ref|YP_008874873.1|	-	0.00022	20.4	0.0	0.00044	19.4	0.0	1.4	1	0	0	1	1	1	1	L-seryl-tRNA	selenium	transferase
Cys_Met_Meta_PP	PF01053.20	gi|564288661|ref|YP_008874873.1|	-	0.0046	15.5	0.0	0.008	14.7	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
UDPG_MGDP_dh_N	PF03721.14	gi|564288662|ref|YP_008874874.1|	-	2.1e-38	131.8	0.0	3.2e-38	131.2	0.0	1.2	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|564288662|ref|YP_008874874.1|	-	5.6e-21	74.5	0.0	1.3e-20	73.4	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564288662|ref|YP_008874874.1|	-	6.5e-16	58.6	0.0	2.4e-15	56.8	0.0	1.9	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_binding_2	PF03446.15	gi|564288662|ref|YP_008874874.1|	-	0.00047	20.4	0.0	0.0015	18.7	0.0	1.9	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|564288662|ref|YP_008874874.1|	-	0.00073	19.5	0.0	0.0019	18.2	0.0	1.7	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.18	gi|564288662|ref|YP_008874874.1|	-	0.02	15.2	0.5	0.49	10.7	0.0	3.1	3	0	0	3	3	3	0	TrkA-N	domain
3HCDH_N	PF02737.18	gi|564288662|ref|YP_008874874.1|	-	0.11	12.4	0.2	0.19	11.6	0.2	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|564288663|ref|YP_008874875.1|	-	2.5e-20	73.5	1.9	2.8e-20	73.3	0.3	1.9	3	0	0	3	3	3	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
IlvN	PF07991.12	gi|564288663|ref|YP_008874875.1|	-	1.8e-06	27.7	0.6	6.2e-06	25.9	0.4	2.0	1	1	1	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
2-Hacid_dh_C	PF02826.19	gi|564288663|ref|YP_008874875.1|	-	4.2e-06	26.2	0.5	2.6e-05	23.7	0.2	2.1	1	1	1	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|564288663|ref|YP_008874875.1|	-	7.6e-06	26.4	2.8	1.9e-05	25.2	0.2	2.4	1	1	1	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|564288663|ref|YP_008874875.1|	-	0.00011	22.4	0.2	0.00029	21.0	0.1	1.8	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
CoA_binding	PF02629.19	gi|564288663|ref|YP_008874875.1|	-	0.00017	22.2	2.2	0.017	15.8	0.2	2.3	2	0	0	2	2	2	1	CoA	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288663|ref|YP_008874875.1|	-	0.012	15.9	1.0	0.068	13.4	1.0	2.2	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
LdpA_C	PF12617.8	gi|564288663|ref|YP_008874875.1|	-	0.038	13.6	0.1	0.098	12.3	0.0	1.7	1	1	0	1	1	1	0	Iron-Sulfur	binding	protein	C	terminal
Semialdhyde_dh	PF01118.24	gi|564288663|ref|YP_008874875.1|	-	0.093	13.2	0.1	0.3	11.5	0.1	1.9	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|564288663|ref|YP_008874875.1|	-	0.19	11.9	1.3	0.48	10.5	0.4	2.2	1	1	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
DegT_DnrJ_EryC1	PF01041.17	gi|564288664|ref|YP_008874876.1|	-	3.9e-119	398.2	0.2	4.4e-119	398.0	0.2	1.0	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|564288664|ref|YP_008874876.1|	-	6.3e-10	38.8	0.1	1e-09	38.2	0.1	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|564288664|ref|YP_008874876.1|	-	0.013	14.5	0.1	0.02	13.9	0.1	1.2	1	0	0	1	1	1	0	Aminotransferase	class-V
Hexapep	PF00132.24	gi|564288665|ref|YP_008874877.1|	-	2.1e-24	84.3	7.6	4.8e-09	35.6	0.5	5.0	5	0	0	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564288665|ref|YP_008874877.1|	-	9.9e-17	60.4	4.6	8.3e-06	25.4	0.2	4.4	4	0	0	4	4	4	4	Hexapeptide	repeat	of	succinyl-transferase
Acetyltransf_6	PF13480.7	gi|564288666|ref|YP_008874878.1|	-	3.9e-18	66.0	0.1	2.3e-17	63.5	0.0	2.1	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
UBX	PF00789.20	gi|564288666|ref|YP_008874878.1|	-	0.051	13.8	0.0	5.4	7.3	0.0	2.3	1	1	0	2	2	2	0	UBX	domain
Acetyltransf_6	PF13480.7	gi|564291282|ref|YP_008874879.1|	-	2.8e-13	50.2	1.5	5.1e-13	49.4	1.5	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FemAB_like	PF04339.12	gi|564291282|ref|YP_008874879.1|	-	2.1e-08	33.7	0.1	3.9e-05	23.0	0.1	2.2	2	0	0	2	2	2	2	Peptidogalycan	biosysnthesis/recognition
FemAB	PF02388.16	gi|564291282|ref|YP_008874879.1|	-	0.00072	18.5	0.0	0.0015	17.5	0.1	1.4	2	0	0	2	2	2	1	FemAB	family
DUF1442	PF07279.11	gi|564291282|ref|YP_008874879.1|	-	0.041	13.2	0.0	0.076	12.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1442)
Glyco_trans_1_4	PF13692.6	gi|564288667|ref|YP_008874880.1|	-	8.4e-11	42.4	0.3	2.7e-10	40.8	0.3	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|564288667|ref|YP_008874880.1|	-	1.5e-09	37.6	0.1	2.3e-09	37.0	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|564288667|ref|YP_008874880.1|	-	6.8e-08	33.1	1.3	6.8e-08	33.1	1.3	2.2	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|564288667|ref|YP_008874880.1|	-	1.6e-06	28.3	0.1	7.4e-06	26.1	0.1	2.1	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_2	PF13477.6	gi|564288667|ref|YP_008874880.1|	-	0.0031	17.5	0.0	0.034	14.2	0.0	2.4	1	1	2	3	3	3	1	Glycosyl	transferase	4-like
Glycos_transf_2	PF00535.26	gi|564288668|ref|YP_008874881.1|	-	9.5e-18	64.6	0.0	1.5e-17	63.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Rab5ip	PF07019.12	gi|564288668|ref|YP_008874881.1|	-	0.065	13.8	1.5	0.11	13.1	1.5	1.3	1	0	0	1	1	1	0	Rab5-interacting	protein	(Rab5ip)
Polysacc_deac_1	PF01522.21	gi|564288669|ref|YP_008874882.1|	-	1.8e-10	40.8	0.0	3.3e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Beta_helix	PF13229.6	gi|564288670|ref|YP_008874883.1|	-	2e-09	37.5	0.2	6.2e-09	35.9	0.2	1.9	1	1	0	1	1	1	1	Right	handed	beta	helix	region
Beta_helix	PF13229.6	gi|564291283|ref|YP_008874884.1|	-	1e-07	31.9	0.8	0.012	15.4	0.8	2.7	1	1	1	2	2	2	2	Right	handed	beta	helix	region
DUF4957	PF16318.5	gi|564291283|ref|YP_008874884.1|	-	0.012	15.6	0.0	1.9	8.4	0.0	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4957)
Big_6	PF17936.1	gi|564291283|ref|YP_008874884.1|	-	0.039	14.2	0.3	0.14	12.4	0.3	1.9	1	0	0	1	1	1	0	Bacterial	Ig	domain
UPF0254	PF06787.11	gi|564291283|ref|YP_008874884.1|	-	0.088	12.6	0.2	0.22	11.3	0.0	1.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0254)
TAT_signal	PF10518.9	gi|564291283|ref|YP_008874884.1|	-	0.093	12.6	0.0	0.26	11.2	0.0	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glycos_transf_1	PF00534.20	gi|564291284|ref|YP_008874885.1|	-	2.9e-20	72.5	0.0	4.3e-20	72.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564291284|ref|YP_008874885.1|	-	1e-18	68.1	0.0	2.2e-18	67.0	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|564291284|ref|YP_008874885.1|	-	2.4e-09	37.5	0.0	4.7e-09	36.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564291284|ref|YP_008874885.1|	-	1.2e-07	31.9	0.1	1.1e-06	28.8	0.1	2.1	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564291284|ref|YP_008874885.1|	-	0.0013	19.2	3.4	0.0015	19.0	1.8	2.0	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Polysacc_synt_C	PF14667.6	gi|564291285|ref|YP_008874886.1|	-	9e-21	74.4	13.0	9e-21	74.4	13.0	3.3	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|564291285|ref|YP_008874886.1|	-	5.8e-18	65.1	4.3	5.8e-18	65.1	4.3	1.7	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|564291285|ref|YP_008874886.1|	-	2.9e-14	52.5	14.0	2.9e-14	52.5	14.0	1.5	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
Polysacc_synt	PF01943.17	gi|564291285|ref|YP_008874886.1|	-	3.2e-08	33.3	13.4	3.2e-08	33.3	13.4	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
DUF354	PF04007.12	gi|564288671|ref|YP_008874887.1|	-	6.6e-10	38.6	0.0	1e-09	37.9	0.0	1.2	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
Glyco_trans_4_2	PF13477.6	gi|564288671|ref|YP_008874887.1|	-	0.00038	20.5	0.0	0.00063	19.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
DUF1616	PF07760.11	gi|564291286|ref|YP_008874888.1|	-	6.6e-16	58.6	0.0	9.6e-16	58.0	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
MHYT	PF03707.16	gi|564291286|ref|YP_008874888.1|	-	9.2	6.5	8.6	2.5	8.3	1.4	2.3	2	0	0	2	2	2	0	Bacterial	signalling	protein	N	terminal	repeat
YdjM	PF04307.14	gi|564288672|ref|YP_008874890.1|	-	0.35	10.1	9.4	4.1	6.7	9.4	2.1	1	1	0	1	1	1	0	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF424	PF04242.13	gi|564288673|ref|YP_008874891.1|	-	7.1e-31	106.3	0.0	7.8e-31	106.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
TPR_1	PF00515.28	gi|564288674|ref|YP_008874892.1|	-	3.4e-23	80.4	5.4	5.7e-06	25.9	0.0	5.2	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_2	PF07719.17	gi|564288674|ref|YP_008874892.1|	-	9.6e-21	72.2	13.0	3.1e-05	23.8	0.1	5.2	5	0	0	5	5	5	5	Tetratricopeptide	repeat
TPR_16	PF13432.6	gi|564288674|ref|YP_008874892.1|	-	4.7e-17	62.3	18.0	3.7e-09	37.1	2.0	3.3	2	1	1	3	3	3	3	Tetratricopeptide	repeat
TPR_8	PF13181.6	gi|564288674|ref|YP_008874892.1|	-	3.6e-16	58.0	2.5	0.00039	20.4	0.0	5.2	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_12	PF13424.6	gi|564288674|ref|YP_008874892.1|	-	6.5e-14	52.0	15.0	9.3e-10	38.7	3.9	3.7	3	1	0	3	3	3	2	Tetratricopeptide	repeat
TPR_11	PF13414.6	gi|564288674|ref|YP_008874892.1|	-	2.5e-11	43.1	3.0	0.0029	17.3	0.0	4.5	1	1	3	4	4	4	2	TPR	repeat
TPR_14	PF13428.6	gi|564288674|ref|YP_008874892.1|	-	6.1e-11	42.2	20.6	0.00099	19.7	0.1	5.2	1	1	4	5	5	5	5	Tetratricopeptide	repeat
TPR_17	PF13431.6	gi|564288674|ref|YP_008874892.1|	-	3e-10	39.7	0.3	0.00082	19.6	0.0	4.4	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|564288674|ref|YP_008874892.1|	-	2.7e-09	37.0	8.4	0.00042	20.4	0.4	3.6	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_7	PF13176.6	gi|564288674|ref|YP_008874892.1|	-	1.2e-08	34.4	13.0	0.0096	15.9	0.2	4.6	5	0	0	5	5	4	4	Tetratricopeptide	repeat
TPR_19	PF14559.6	gi|564288674|ref|YP_008874892.1|	-	6.9e-08	32.9	11.9	0.00092	19.7	0.0	3.6	1	1	2	4	4	4	3	Tetratricopeptide	repeat
TPR_6	PF13174.6	gi|564288674|ref|YP_008874892.1|	-	2.4e-06	27.8	5.9	3.6	8.4	0.0	5.1	5	0	0	5	5	5	1	Tetratricopeptide	repeat
TPR_10	PF13374.6	gi|564288674|ref|YP_008874892.1|	-	7.6e-05	22.5	19.1	0.0053	16.6	0.3	4.6	5	0	0	5	5	5	2	Tetratricopeptide	repeat
DUF4192	PF13830.6	gi|564288674|ref|YP_008874892.1|	-	0.0012	19.0	2.9	0.0012	19.0	2.9	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4192)
TPR_4	PF07721.14	gi|564288674|ref|YP_008874892.1|	-	0.0015	18.9	0.5	0.0015	18.9	0.5	5.1	6	0	0	6	6	5	2	Tetratricopeptide	repeat
YfiO	PF13525.6	gi|564288674|ref|YP_008874892.1|	-	0.035	13.8	0.7	0.069	12.9	0.3	1.6	1	1	0	1	1	1	0	Outer	membrane	lipoprotein
ANAPC5	PF12862.7	gi|564288674|ref|YP_008874892.1|	-	0.051	13.6	1.7	23	5.1	1.4	3.1	2	1	0	2	2	2	0	Anaphase-promoting	complex	subunit	5
DUF3856	PF12968.7	gi|564288674|ref|YP_008874892.1|	-	0.095	12.8	9.8	1.5	8.9	1.7	3.6	1	1	2	3	3	3	0	Domain	of	Unknown	Function	(DUF3856)
TPR_20	PF14561.6	gi|564288674|ref|YP_008874892.1|	-	0.26	11.6	9.8	2.1	8.7	0.2	3.0	2	2	1	3	3	3	0	Tetratricopeptide	repeat
SMBP	PF16785.5	gi|564288674|ref|YP_008874892.1|	-	3.4	7.9	8.8	2.6	8.3	1.8	2.9	2	1	1	3	3	3	0	Small	metal-binding	protein
UbiA	PF01040.18	gi|564291288|ref|YP_008874893.1|	-	4.1	6.6	16.0	7.7	5.7	16.0	1.4	1	1	0	1	1	1	0	UbiA	prenyltransferase	family
LigT_PEase	PF02834.16	gi|564288675|ref|YP_008874894.1|	-	3.8e-23	81.5	0.0	5.2e-13	49.0	0.0	2.1	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.6	gi|564288675|ref|YP_008874894.1|	-	1.8e-17	63.6	0.0	2.2e-17	63.3	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.9	gi|564288675|ref|YP_008874894.1|	-	6.4e-08	32.7	0.0	7.4e-08	32.5	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
HVSL	PF09749.9	gi|564288675|ref|YP_008874894.1|	-	0.029	13.8	0.0	0.036	13.5	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	conserved	protein
Zip	PF02535.22	gi|564288676|ref|YP_008874895.1|	-	1.2e-12	47.7	21.0	6.3e-10	38.8	5.4	3.1	3	0	0	3	3	3	3	ZIP	Zinc	transporter
TAT_signal	PF10518.9	gi|564288677|ref|YP_008874896.1|	-	0.12	12.3	1.0	0.2	11.6	1.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Ribosomal_L39	PF00832.20	gi|564288678|ref|YP_008874897.1|	-	4e-20	71.2	7.4	4.7e-20	70.9	7.4	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Ribosomal_L31e	PF01198.19	gi|564288679|ref|YP_008874898.1|	-	1.3e-09	38.2	0.2	1.5e-09	37.9	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Tom37_C	PF11801.8	gi|564288679|ref|YP_008874898.1|	-	0.13	12.2	0.0	0.2	11.6	0.0	1.2	1	0	0	1	1	1	0	Tom37	C-terminal	domain
eIF-6	PF01912.18	gi|564288680|ref|YP_008874899.1|	-	4.1e-73	245.0	0.0	4.6e-73	244.8	0.0	1.0	1	0	0	1	1	1	1	eIF-6	family
Zn_ribbon_SprT	PF17283.2	gi|564288681|ref|YP_008874900.1|	-	0.098	12.6	2.0	4.3	7.3	0.2	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|564288682|ref|YP_008874901.1|	-	3.7e-05	23.6	2.4	0.0052	16.7	0.2	2.1	2	0	0	2	2	2	2	Nudix	N-terminal
DUF1272	PF06906.11	gi|564288682|ref|YP_008874901.1|	-	0.00099	19.1	1.0	0.0013	18.7	1.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
A2L_zn_ribbon	PF08792.10	gi|564288682|ref|YP_008874901.1|	-	0.0016	18.1	0.3	0.87	9.4	0.1	2.1	2	0	0	2	2	2	2	A2L	zinc	ribbon	domain
zf-RING_10	PF16685.5	gi|564288682|ref|YP_008874901.1|	-	0.002	18.2	0.2	0.002	18.2	0.2	1.0	1	0	0	1	1	1	1	zinc	RING	finger	of	MSL2
RNA_POL_M_15KD	PF02150.16	gi|564288682|ref|YP_008874901.1|	-	0.002	17.9	1.3	0.24	11.3	0.2	2.1	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
PhnA_Zn_Ribbon	PF08274.12	gi|564288682|ref|YP_008874901.1|	-	0.0048	16.8	0.9	0.21	11.5	0.1	2.1	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
HypA	PF01155.19	gi|564288682|ref|YP_008874901.1|	-	0.01	15.8	0.5	0.011	15.8	0.5	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_Rg	PF17915.1	gi|564288682|ref|YP_008874901.1|	-	0.016	14.6	1.3	0.032	13.6	0.1	1.9	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
zf-C4_Topoisom	PF01396.19	gi|564288682|ref|YP_008874901.1|	-	0.017	14.9	0.3	0.017	14.9	0.3	1.9	1	1	1	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Rubredoxin_2	PF18073.1	gi|564288682|ref|YP_008874901.1|	-	0.023	14.4	2.4	0.033	13.9	2.4	1.2	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
TF_Zn_Ribbon	PF08271.12	gi|564288682|ref|YP_008874901.1|	-	0.032	13.7	1.6	0.53	9.8	0.2	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
PriA_CRR	PF18319.1	gi|564288682|ref|YP_008874901.1|	-	0.032	14.2	0.8	0.53	10.3	0.1	2.1	2	0	0	2	2	2	0	PriA	DNA	helicase	Cys-rich	region	(CRR)	domain
zf-IS66	PF13005.7	gi|564288682|ref|YP_008874901.1|	-	0.034	14.6	2.3	0.32	11.4	0.2	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Zn_Tnp_IS1595	PF12760.7	gi|564288682|ref|YP_008874901.1|	-	0.044	13.8	2.4	1.4	8.9	0.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_10	PF10058.9	gi|564288682|ref|YP_008874901.1|	-	0.087	12.6	1.0	0.35	10.6	1.0	1.8	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF35_N	PF12172.8	gi|564288682|ref|YP_008874901.1|	-	0.087	12.7	4.7	0.16	11.9	4.7	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C2H2_3	PF13878.6	gi|564288682|ref|YP_008874901.1|	-	0.13	12.2	0.2	0.13	12.2	0.2	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
NRDD	PF13597.6	gi|564288682|ref|YP_008874901.1|	-	0.17	10.6	0.8	0.18	10.5	0.8	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
Zn-ribbon_8	PF09723.10	gi|564288682|ref|YP_008874901.1|	-	0.19	11.9	3.7	0.44	10.7	3.7	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|564288682|ref|YP_008874901.1|	-	0.4	11.0	4.5	7.6	6.9	4.5	2.1	1	1	0	1	1	1	0	zinc-ribbon
Anti-TRAP	PF15777.5	gi|564288682|ref|YP_008874901.1|	-	0.46	10.5	3.4	1.6	8.8	3.4	1.8	1	1	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Ribosomal_S27	PF01599.19	gi|564288682|ref|YP_008874901.1|	-	0.51	10.5	4.4	5.6	7.2	0.6	2.1	1	1	1	2	2	2	0	Ribosomal	protein	S27a
Ribosomal_L18A	PF01775.17	gi|564288683|ref|YP_008874902.1|	-	5.2e-13	49.1	0.0	5.7e-13	49.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L18Ae/60S-L20/60S-L18A
Prefoldin	PF02996.17	gi|564288684|ref|YP_008874903.1|	-	1.7e-23	82.8	6.3	1.7e-23	82.8	6.3	1.6	1	1	0	1	1	1	1	Prefoldin	subunit
Prefoldin_2	PF01920.20	gi|564288684|ref|YP_008874903.1|	-	4.7e-08	32.9	24.6	1.2e-05	25.1	9.8	2.6	1	1	2	3	3	3	2	Prefoldin	subunit
APG6_N	PF17675.1	gi|564288684|ref|YP_008874903.1|	-	1.4e-05	25.6	24.6	0.0013	19.3	12.3	2.1	2	0	0	2	2	2	2	Apg6	coiled-coil	region
DUF5082	PF16888.5	gi|564288684|ref|YP_008874903.1|	-	0.00014	22.1	19.4	0.0011	19.2	2.1	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF5082)
GAS	PF13851.6	gi|564288684|ref|YP_008874903.1|	-	0.00073	18.9	13.4	0.15	11.4	0.2	2.1	2	0	0	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
DivIC	PF04977.15	gi|564288684|ref|YP_008874903.1|	-	0.0012	18.5	0.2	0.0012	18.5	0.2	3.1	2	1	1	3	3	2	1	Septum	formation	initiator
Uds1	PF15456.6	gi|564288684|ref|YP_008874903.1|	-	0.0026	17.9	5.8	0.0054	16.9	5.7	1.5	1	1	0	1	1	1	1	Up-regulated	During	Septation
FliD_C	PF07195.12	gi|564288684|ref|YP_008874903.1|	-	0.0032	16.9	9.3	0.0086	15.5	4.1	2.1	2	0	0	2	2	2	1	Flagellar	hook-associated	protein	2	C-terminus
Syntaxin	PF00804.25	gi|564288684|ref|YP_008874903.1|	-	0.0044	16.7	12.3	0.1	12.2	0.9	2.1	2	0	0	2	2	2	2	Syntaxin
DUF4795	PF16043.5	gi|564288684|ref|YP_008874903.1|	-	0.0054	16.4	13.2	0.26	10.9	0.3	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4795)
XhlA	PF10779.9	gi|564288684|ref|YP_008874903.1|	-	0.0079	16.4	16.5	0.097	12.9	4.0	2.4	2	0	0	2	2	2	2	Haemolysin	XhlA
ZapB	PF06005.12	gi|564288684|ref|YP_008874903.1|	-	0.0097	16.3	27.8	0.23	11.9	18.3	2.3	2	0	0	2	2	2	2	Cell	division	protein	ZapB
DUF4618	PF15397.6	gi|564288684|ref|YP_008874903.1|	-	0.011	15.2	21.9	0.13	11.6	1.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4618)
BLOC1_2	PF10046.9	gi|564288684|ref|YP_008874903.1|	-	0.014	15.7	1.6	0.014	15.7	1.6	2.6	3	0	0	3	3	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Sipho_Gp157	PF05565.11	gi|564288684|ref|YP_008874903.1|	-	0.015	15.4	1.1	0.015	15.4	1.1	2.2	2	0	0	2	2	2	0	Siphovirus	Gp157
DUF4988	PF16378.5	gi|564288684|ref|YP_008874903.1|	-	0.017	14.8	4.3	0.2	11.3	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function
Laminin_II	PF06009.12	gi|564288684|ref|YP_008874903.1|	-	0.018	15.0	8.8	0.83	9.7	2.3	2.2	2	0	0	2	2	2	0	Laminin	Domain	II
Seryl_tRNA_N	PF02403.22	gi|564288684|ref|YP_008874903.1|	-	0.019	15.2	12.7	0.62	10.3	1.4	2.3	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Golgin_A5	PF09787.9	gi|564288684|ref|YP_008874903.1|	-	0.024	14.1	19.0	0.75	9.2	0.2	2.0	2	0	0	2	2	2	0	Golgin	subfamily	A	member	5
NPV_P10	PF05531.12	gi|564288684|ref|YP_008874903.1|	-	0.028	14.9	20.0	0.77	10.3	6.5	2.8	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
YlqD	PF11068.8	gi|564288684|ref|YP_008874903.1|	-	0.032	14.6	23.5	0.71	10.2	1.7	2.3	2	0	0	2	2	2	0	YlqD	protein
DUF3450	PF11932.8	gi|564288684|ref|YP_008874903.1|	-	0.033	13.5	20.5	0.24	10.7	11.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
CENP-F_leu_zip	PF10473.9	gi|564288684|ref|YP_008874903.1|	-	0.034	14.2	22.6	0.21	11.6	1.0	2.4	2	1	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF932	PF06067.11	gi|564288684|ref|YP_008874903.1|	-	0.038	13.8	7.3	0.32	10.7	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF932)
GPS2_interact	PF15784.5	gi|564288684|ref|YP_008874903.1|	-	0.042	14.3	18.2	0.12	12.9	7.0	2.1	2	0	0	2	2	2	0	G-protein	pathway	suppressor	2-interacting	domain
Jnk-SapK_ap_N	PF09744.9	gi|564288684|ref|YP_008874903.1|	-	0.045	14.0	19.3	0.23	11.7	11.3	2.1	2	0	0	2	2	2	0	JNK_SAPK-associated	protein-1
ADIP	PF11559.8	gi|564288684|ref|YP_008874903.1|	-	0.049	13.7	14.9	0.12	12.5	7.8	2.1	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Tektin	PF03148.14	gi|564288684|ref|YP_008874903.1|	-	0.053	12.3	17.9	0.11	11.2	1.6	2.2	2	0	0	2	2	2	0	Tektin	family
DUF812	PF05667.11	gi|564288684|ref|YP_008874903.1|	-	0.058	12.3	21.4	0.35	9.7	1.4	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF812)
Spc7	PF08317.11	gi|564288684|ref|YP_008874903.1|	-	0.06	12.2	22.2	0.19	10.6	1.7	2.1	2	0	0	2	2	2	0	Spc7	kinetochore	protein
SlyX	PF04102.12	gi|564288684|ref|YP_008874903.1|	-	0.076	13.6	26.8	4.4	8.0	17.2	3.1	3	0	0	3	3	3	0	SlyX
MscS_porin	PF12795.7	gi|564288684|ref|YP_008874903.1|	-	0.079	12.5	0.5	0.079	12.5	0.5	2.0	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
COG2	PF06148.11	gi|564288684|ref|YP_008874903.1|	-	0.079	13.0	10.0	0.76	9.9	0.5	2.2	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Plk4_PB2	PF18409.1	gi|564288684|ref|YP_008874903.1|	-	0.1	13.3	3.3	9.6	6.9	1.8	2.1	2	0	0	2	2	2	0	Polo-like	Kinase	4	Polo	Box	2
Tropomyosin_1	PF12718.7	gi|564288684|ref|YP_008874903.1|	-	0.1	12.7	26.4	0.073	13.2	1.7	2.1	2	0	0	2	2	2	0	Tropomyosin	like
HemX	PF04375.14	gi|564288684|ref|YP_008874903.1|	-	0.11	11.8	17.1	1	8.6	0.1	2.0	2	0	0	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Spc24	PF08286.11	gi|564288684|ref|YP_008874903.1|	-	0.11	12.7	19.0	0.49	10.7	0.2	2.2	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
Nsp1_C	PF05064.13	gi|564288684|ref|YP_008874903.1|	-	0.11	12.3	21.0	0.074	12.9	1.6	2.2	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
Phage_GP20	PF06810.11	gi|564288684|ref|YP_008874903.1|	-	0.11	12.3	18.9	0.2	11.4	2.0	2.1	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
CLZ	PF16526.5	gi|564288684|ref|YP_008874903.1|	-	0.12	12.8	16.1	2.2	8.7	0.3	2.5	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Fib_alpha	PF08702.10	gi|564288684|ref|YP_008874903.1|	-	0.12	12.5	12.7	1.4	9.1	0.7	2.1	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
UPF0242	PF06785.11	gi|564288684|ref|YP_008874903.1|	-	0.13	12.4	19.7	0.31	11.1	10.7	2.0	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Wtap	PF17098.5	gi|564288684|ref|YP_008874903.1|	-	0.13	12.2	14.9	0.62	10.0	8.0	2.3	2	0	0	2	2	2	0	WTAP/Mum2p	family
Sec34	PF04136.15	gi|564288684|ref|YP_008874903.1|	-	0.13	12.2	15.2	0.59	10.0	0.5	2.1	2	0	0	2	2	2	0	Sec34-like	family
Ax_dynein_light	PF10211.9	gi|564288684|ref|YP_008874903.1|	-	0.15	12.0	23.8	0.72	9.8	14.9	2.1	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
Flagellar_rod	PF05149.12	gi|564288684|ref|YP_008874903.1|	-	0.15	11.5	17.1	0.062	12.8	9.0	2.1	2	0	0	2	2	2	0	Paraflagellar	rod	protein
FlaC_arch	PF05377.11	gi|564288684|ref|YP_008874903.1|	-	0.17	12.3	21.0	0.15	12.5	3.8	3.4	3	1	0	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
DUF3251	PF11622.8	gi|564288684|ref|YP_008874903.1|	-	0.18	11.5	9.0	8.4	6.0	7.8	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3251)
RPW8	PF05659.11	gi|564288684|ref|YP_008874903.1|	-	0.18	11.5	5.8	0.23	11.1	0.2	2.4	2	0	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
bZIP_1	PF00170.21	gi|564288684|ref|YP_008874903.1|	-	0.19	11.8	13.0	0.36	11.0	0.5	2.6	2	1	0	2	2	2	0	bZIP	transcription	factor
DUF2570	PF10828.8	gi|564288684|ref|YP_008874903.1|	-	0.22	11.3	19.5	0.25	11.2	10.8	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2570)
Phage_GPO	PF05929.11	gi|564288684|ref|YP_008874903.1|	-	0.23	11.1	10.6	4.8	6.7	6.7	2.1	2	0	0	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
Sec66	PF09802.9	gi|564288684|ref|YP_008874903.1|	-	0.24	11.0	8.3	0.36	10.4	3.6	2.1	2	0	0	2	2	2	0	Preprotein	translocase	subunit	Sec66
BshC	PF10079.9	gi|564288684|ref|YP_008874903.1|	-	0.29	9.8	11.2	0.32	9.7	5.4	2.0	2	0	0	2	2	2	0	Bacillithiol	biosynthesis	BshC
EMP24_GP25L	PF01105.24	gi|564288684|ref|YP_008874903.1|	-	0.3	11.0	13.5	1.6	8.6	1.2	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
YabA	PF06156.13	gi|564288684|ref|YP_008874903.1|	-	0.31	11.7	18.7	1.4	9.6	0.6	2.1	2	0	0	2	2	2	0	Initiation	control	protein	YabA
FapA	PF03961.13	gi|564288684|ref|YP_008874903.1|	-	0.33	9.5	14.3	1.1	7.8	6.4	2.0	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
DUF2968	PF11180.8	gi|564288684|ref|YP_008874903.1|	-	0.33	10.6	20.7	0.88	9.2	10.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
DUF3086	PF11285.8	gi|564288684|ref|YP_008874903.1|	-	0.48	9.5	10.4	2.8	7.0	5.8	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3086)
Prominin	PF05478.11	gi|564288684|ref|YP_008874903.1|	-	0.6	8.0	7.3	4.4	5.1	3.8	2.0	2	0	0	2	2	2	0	Prominin
DUF2203	PF09969.9	gi|564288684|ref|YP_008874903.1|	-	0.68	10.7	10.8	6.8	7.4	0.1	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
Baculo_PEP_C	PF04513.12	gi|564288684|ref|YP_008874903.1|	-	0.71	9.9	11.6	0.54	10.3	0.8	2.2	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF1664	PF07889.12	gi|564288684|ref|YP_008874903.1|	-	0.74	9.9	17.7	0.15	12.1	1.6	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1664)
DUF4407	PF14362.6	gi|564288684|ref|YP_008874903.1|	-	0.9	8.8	16.0	2	7.7	16.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
SAS4	PF15460.6	gi|564288684|ref|YP_008874903.1|	-	1	9.5	13.7	1.7	8.8	6.6	2.4	2	0	0	2	2	2	0	Something	about	silencing,	SAS,	complex	subunit	4
DELLA	PF12041.8	gi|564288684|ref|YP_008874903.1|	-	1.3	8.9	10.6	0.29	11.0	0.4	2.5	2	0	0	2	2	2	0	Transcriptional	regulator	DELLA	protein	N	terminal
DUF948	PF06103.11	gi|564288684|ref|YP_008874903.1|	-	1.4	9.3	11.6	0.25	11.6	0.6	2.5	3	0	0	3	3	2	0	Bacterial	protein	of	unknown	function	(DUF948)
OmpH	PF03938.14	gi|564288684|ref|YP_008874903.1|	-	1.4	9.2	32.5	3	8.2	2.0	2.1	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
RmuC	PF02646.16	gi|564288684|ref|YP_008874903.1|	-	1.4	7.9	16.5	3.4	6.7	0.3	2.1	2	0	0	2	2	2	0	RmuC	family
TMF_DNA_bd	PF12329.8	gi|564288684|ref|YP_008874903.1|	-	1.6	8.8	20.3	0.12	12.3	7.0	2.8	2	1	1	3	3	3	0	TATA	element	modulatory	factor	1	DNA	binding
DUF4337	PF14235.6	gi|564288684|ref|YP_008874903.1|	-	1.7	8.8	16.9	0.94	9.6	9.9	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4337)
DUF4446	PF14584.6	gi|564288684|ref|YP_008874903.1|	-	1.7	8.6	11.9	4.9	7.1	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
DUF4140	PF13600.6	gi|564288684|ref|YP_008874903.1|	-	1.7	9.1	20.0	0.86	10.1	4.0	2.8	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
AAA_13	PF13166.6	gi|564288684|ref|YP_008874903.1|	-	1.8	7.1	17.8	10	4.6	17.8	1.8	1	1	0	1	1	1	0	AAA	domain
TMPIT	PF07851.13	gi|564288684|ref|YP_008874903.1|	-	1.8	7.8	11.5	5.4	6.2	0.0	2.0	2	0	0	2	2	2	0	TMPIT-like	protein
Fzo_mitofusin	PF04799.13	gi|564288684|ref|YP_008874903.1|	-	1.8	8.1	12.6	0.98	9.0	0.5	2.2	2	0	0	2	2	2	0	fzo-like	conserved	region
bZIP_Maf	PF03131.17	gi|564288684|ref|YP_008874903.1|	-	1.9	9.1	18.2	2.9	8.5	1.2	2.3	2	0	0	2	2	2	0	bZIP	Maf	transcription	factor
PRKG1_interact	PF15898.5	gi|564288684|ref|YP_008874903.1|	-	2.1	9.3	18.2	12	6.8	0.3	2.2	2	0	0	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
ABC_tran_CTD	PF16326.5	gi|564288684|ref|YP_008874903.1|	-	2.2	8.6	30.7	6.7	7.0	14.7	2.9	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
ERM	PF00769.19	gi|564288684|ref|YP_008874903.1|	-	2.3	7.9	28.3	0.97	9.2	1.1	2.0	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
DUF724	PF05266.14	gi|564288684|ref|YP_008874903.1|	-	2.4	7.9	20.6	5.4	6.8	0.7	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
AAA_lid_9	PF17871.1	gi|564288684|ref|YP_008874903.1|	-	2.6	8.0	16.4	4.8	7.2	8.0	2.3	2	0	0	2	2	2	0	AAA	lid	domain
DUF2730	PF10805.8	gi|564288684|ref|YP_008874903.1|	-	2.9	8.0	12.0	9.7	6.3	0.5	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2730)
LMBR1	PF04791.16	gi|564288684|ref|YP_008874903.1|	-	2.9	6.7	6.1	3.5	6.4	6.1	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
BRI3BP	PF14965.6	gi|564288684|ref|YP_008874903.1|	-	3.3	7.2	4.3	41	3.6	0.1	2.7	2	1	1	3	3	3	0	Negative	regulator	of	p53/TP53
Cob_adeno_trans	PF01923.18	gi|564288684|ref|YP_008874903.1|	-	3.3	7.8	10.3	11	6.1	3.9	2.2	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
HR1	PF02185.16	gi|564288684|ref|YP_008874903.1|	-	3.3	7.9	21.2	1.1	9.4	1.3	2.3	2	0	0	2	2	2	0	Hr1	repeat
Helo_like_N	PF17111.5	gi|564288684|ref|YP_008874903.1|	-	4.3	6.6	13.4	2.4	7.5	6.3	2.1	2	0	0	2	2	2	0	Fungal	N-terminal	domain	of	STAND	proteins
Nup54	PF13874.6	gi|564288684|ref|YP_008874903.1|	-	5.1	7.2	21.0	6.2	6.9	1.4	2.1	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
DHR10	PF18595.1	gi|564288684|ref|YP_008874903.1|	-	7.3	6.7	29.3	2.6	8.1	3.9	2.2	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
TSC22	PF01166.18	gi|564288684|ref|YP_008874903.1|	-	7.6	6.9	17.6	5.3	7.4	8.3	2.6	2	1	0	2	2	2	0	TSC-22/dip/bun	family
Allexi_40kDa	PF05549.11	gi|564288684|ref|YP_008874903.1|	-	7.6	6.0	9.6	6.6	6.2	3.3	2.0	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
zf-CpG_bind_C	PF12269.8	gi|564288684|ref|YP_008874903.1|	-	8.1	6.2	12.5	7.6	6.2	0.3	2.1	2	0	0	2	2	2	0	CpG	binding	protein	zinc	finger	C	terminal	domain
LCIB_C_CA	PF18599.1	gi|564288684|ref|YP_008874903.1|	-	8.9	5.5	11.0	1.6	8.0	5.4	1.9	2	0	0	2	2	2	0	Limiting	CO2-inducible	proteins	B/C	beta	carbonyic	anhydrases
DASH_Dam1	PF08653.10	gi|564288684|ref|YP_008874903.1|	-	9.8	6.1	10.9	33	4.4	0.5	3.5	2	2	1	3	3	3	0	DASH	complex	subunit	Dam1
Med4	PF10018.9	gi|564288684|ref|YP_008874903.1|	-	9.9	5.8	17.8	2	8.1	1.2	2.2	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
SRP54	PF00448.22	gi|564288685|ref|YP_008874904.1|	-	4.3e-68	228.8	0.2	6.1e-68	228.3	0.2	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.19	gi|564288685|ref|YP_008874904.1|	-	1.1e-10	41.5	0.9	1.1e-10	41.5	0.9	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
Zeta_toxin	PF06414.12	gi|564288685|ref|YP_008874904.1|	-	1.9e-05	24.0	0.1	3.2e-05	23.3	0.1	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_17	PF13207.6	gi|564288685|ref|YP_008874904.1|	-	2e-05	25.1	0.1	6.1e-05	23.5	0.1	1.9	1	0	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.20	gi|564288685|ref|YP_008874904.1|	-	2.6e-05	24.2	0.0	5.4e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	Adenylylsulphate	kinase
AAA_30	PF13604.6	gi|564288685|ref|YP_008874904.1|	-	0.00014	21.6	0.8	0.00035	20.3	0.8	1.7	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564288685|ref|YP_008874904.1|	-	0.00029	20.9	0.0	0.00065	19.8	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_28	PF13521.6	gi|564288685|ref|YP_008874904.1|	-	0.0003	21.1	0.6	0.0019	18.5	0.2	2.5	2	1	0	2	2	2	1	AAA	domain
Thymidylate_kin	PF02223.17	gi|564288685|ref|YP_008874904.1|	-	0.00036	20.2	0.1	0.0054	16.4	0.0	2.3	2	0	0	2	2	2	1	Thymidylate	kinase
KTI12	PF08433.10	gi|564288685|ref|YP_008874904.1|	-	0.0009	18.8	0.0	0.0016	17.9	0.0	1.3	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_16	PF13191.6	gi|564288685|ref|YP_008874904.1|	-	0.0016	18.9	0.1	0.0016	18.9	0.1	2.6	2	2	0	2	2	1	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564288685|ref|YP_008874904.1|	-	0.0026	18.0	0.1	0.017	15.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|564288685|ref|YP_008874904.1|	-	0.0084	16.4	0.0	0.021	15.1	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
cobW	PF02492.19	gi|564288685|ref|YP_008874904.1|	-	0.0096	15.5	1.7	0.012	15.2	0.1	1.8	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_19	PF13245.6	gi|564288685|ref|YP_008874904.1|	-	0.015	15.7	0.1	0.027	14.8	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|564288685|ref|YP_008874904.1|	-	0.018	14.9	0.1	0.034	14.0	0.1	1.4	1	0	0	1	1	1	0	NTPase
AAA_29	PF13555.6	gi|564288685|ref|YP_008874904.1|	-	0.019	14.7	0.2	0.054	13.2	0.0	1.8	2	0	0	2	2	1	0	P-loop	containing	region	of	AAA	domain
MeaB	PF03308.16	gi|564288685|ref|YP_008874904.1|	-	0.021	13.8	0.0	0.036	13.0	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_14	PF13173.6	gi|564288685|ref|YP_008874904.1|	-	0.027	14.5	0.1	0.097	12.7	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|564288685|ref|YP_008874904.1|	-	0.044	13.5	0.2	0.089	12.5	0.2	1.5	1	1	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.17	gi|564288685|ref|YP_008874904.1|	-	0.056	13.2	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
6PF2K	PF01591.18	gi|564288685|ref|YP_008874904.1|	-	0.063	12.6	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	6-phosphofructo-2-kinase
AAA_31	PF13614.6	gi|564288685|ref|YP_008874904.1|	-	0.081	12.8	0.5	0.31	10.9	0.1	2.1	3	0	0	3	3	2	0	AAA	domain
PRCC	PF10253.9	gi|564288685|ref|YP_008874904.1|	-	0.1	13.4	11.7	0.2	12.4	11.7	1.4	1	0	0	1	1	1	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
PPK2	PF03976.14	gi|564288685|ref|YP_008874904.1|	-	0.11	12.0	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
AAA_18	PF13238.6	gi|564288685|ref|YP_008874904.1|	-	0.12	12.9	0.3	0.36	11.4	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.12	gi|564288685|ref|YP_008874904.1|	-	0.13	12.2	0.2	0.46	10.4	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
Aldolase	PF01081.19	gi|564288687|ref|YP_008874906.1|	-	3.8e-41	140.7	2.7	4.3e-41	140.5	2.7	1.0	1	0	0	1	1	1	1	KDPG	and	KHG	aldolase
DHO_dh	PF01180.21	gi|564288687|ref|YP_008874906.1|	-	0.00012	21.4	7.0	0.13	11.4	0.1	3.1	1	1	1	3	3	3	3	Dihydroorotate	dehydrogenase
PEP_hydrolase	PF09370.10	gi|564288687|ref|YP_008874906.1|	-	0.0023	17.2	1.8	0.25	10.5	0.1	2.2	1	1	0	2	2	2	2	Phosphoenolpyruvate	hydrolase-like
TMP-TENI	PF02581.17	gi|564288687|ref|YP_008874906.1|	-	0.053	12.9	3.3	0.69	9.2	0.1	3.0	2	2	2	4	4	4	0	Thiamine	monophosphate	synthase
IMPDH	PF00478.25	gi|564288687|ref|YP_008874906.1|	-	0.42	9.6	7.4	0.073	12.0	1.6	2.4	2	1	1	3	3	3	0	IMP	dehydrogenase	/	GMP	reductase	domain
Cupin_2	PF07883.11	gi|564288688|ref|YP_008874907.1|	-	7.4e-14	51.2	1.1	9.7e-14	50.8	1.1	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|564288688|ref|YP_008874907.1|	-	3.7e-05	23.7	0.1	5.5e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.18	gi|564288688|ref|YP_008874907.1|	-	0.0026	17.7	0.0	0.0031	17.4	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
DUF2600	PF10776.9	gi|564288688|ref|YP_008874907.1|	-	0.026	13.4	0.2	0.034	13.0	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2600)
AraC_binding_2	PF14525.6	gi|564288688|ref|YP_008874907.1|	-	0.027	14.2	0.0	0.047	13.4	0.0	1.3	1	1	0	1	1	1	0	AraC-binding-like	domain
Cupin_3	PF05899.12	gi|564288688|ref|YP_008874907.1|	-	0.055	13.2	0.0	0.078	12.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
Cupin_1	PF00190.22	gi|564288688|ref|YP_008874907.1|	-	0.082	12.5	0.0	0.098	12.3	0.0	1.2	1	0	0	1	1	1	0	Cupin
Mem_trans	PF03547.18	gi|564288689|ref|YP_008874908.1|	-	6.9e-19	67.5	14.2	8.6e-13	47.4	0.4	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
SBF	PF01758.16	gi|564288689|ref|YP_008874908.1|	-	0.39	10.4	14.4	0.023	14.4	7.2	2.4	2	0	0	2	2	2	0	Sodium	Bile	acid	symporter	family
SRP54	PF00448.22	gi|564288690|ref|YP_008874909.1|	-	1.3e-59	201.2	0.1	2e-59	200.6	0.1	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.19	gi|564288690|ref|YP_008874909.1|	-	1.1e-29	103.0	4.8	1.1e-29	103.0	4.8	3.2	4	0	0	4	4	4	1	Signal	peptide	binding	domain
SRP54_N	PF02881.19	gi|564288690|ref|YP_008874909.1|	-	3e-17	62.6	2.6	6.6e-17	61.5	0.1	2.8	3	0	0	3	3	3	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.23	gi|564288690|ref|YP_008874909.1|	-	2.5e-05	24.3	0.0	8.1e-05	22.7	0.0	1.9	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.15	gi|564288690|ref|YP_008874909.1|	-	0.0072	15.5	6.7	0.11	11.6	0.0	3.2	2	1	0	3	3	3	1	Anion-transporting	ATPase
cobW	PF02492.19	gi|564288690|ref|YP_008874909.1|	-	0.0082	15.7	0.3	0.21	11.2	0.3	2.5	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.12	gi|564288690|ref|YP_008874909.1|	-	0.013	14.7	0.1	1.7	7.9	0.0	2.7	3	0	0	3	3	3	0	Zeta	toxin
AAA_22	PF13401.6	gi|564288690|ref|YP_008874909.1|	-	0.025	14.8	0.1	0.14	12.5	0.0	2.3	3	0	0	3	3	2	0	AAA	domain
SMC_N	PF02463.19	gi|564288690|ref|YP_008874909.1|	-	0.026	14.0	0.0	0.043	13.2	0.0	1.3	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
CARD	PF00619.21	gi|564288690|ref|YP_008874909.1|	-	0.038	14.0	1.0	0.19	11.8	0.1	2.3	2	0	0	2	2	2	0	Caspase	recruitment	domain
AAA_24	PF13479.6	gi|564288690|ref|YP_008874909.1|	-	0.057	13.1	0.0	0.12	12.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
SRPRB	PF09439.10	gi|564288690|ref|YP_008874909.1|	-	0.071	12.5	0.0	12	5.3	0.0	2.5	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
TrwB_AAD_bind	PF10412.9	gi|564288690|ref|YP_008874909.1|	-	0.098	11.5	0.0	0.18	10.7	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DCX	PF03607.17	gi|564288690|ref|YP_008874909.1|	-	0.14	12.2	0.1	0.46	10.6	0.1	1.9	1	0	0	1	1	1	0	Doublecortin
YppG	PF14179.6	gi|564288690|ref|YP_008874909.1|	-	3.1	8.6	7.4	2.4	8.9	0.8	2.3	2	0	0	2	2	2	0	YppG-like	protein
DUF2312	PF10073.9	gi|564288690|ref|YP_008874909.1|	-	8.6	6.1	7.7	13	5.5	0.3	3.0	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
Usp	PF00582.26	gi|564288691|ref|YP_008874910.1|	-	1.1e-18	68.1	3.3	2.3e-18	67.1	3.3	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
DAGK_cat	PF00781.24	gi|564288691|ref|YP_008874910.1|	-	0.0017	18.0	0.0	0.0029	17.2	0.0	1.3	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
baeRF_family2	PF18844.1	gi|564288691|ref|YP_008874910.1|	-	0.04	14.0	3.3	0.07	13.2	3.3	1.6	1	1	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	2
B12-binding	PF02310.19	gi|564288691|ref|YP_008874910.1|	-	0.056	13.5	0.2	0.096	12.7	0.1	1.5	1	1	0	1	1	1	0	B12	binding	domain
Thioredoxin	PF00085.20	gi|564288692|ref|YP_008874911.1|	-	6.9e-10	38.8	0.0	1.2e-09	38.1	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288692|ref|YP_008874911.1|	-	0.00028	21.3	0.3	0.0099	16.3	0.3	2.5	1	1	0	1	1	1	1	Thioredoxin-like	domain
DUF2397	PF09660.10	gi|564288692|ref|YP_008874911.1|	-	0.035	13.0	0.2	0.069	12.0	0.1	1.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2397)
AhpC-TSA	PF00578.21	gi|564288692|ref|YP_008874911.1|	-	0.15	12.0	0.3	2.9	7.8	0.0	2.3	2	1	0	2	2	2	0	AhpC/TSA	family
ABC_tran	PF00005.27	gi|564288693|ref|YP_008874912.1|	-	1.9e-29	103.0	0.0	2.6e-29	102.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288693|ref|YP_008874912.1|	-	4.5e-10	39.8	0.5	9.9e-05	22.3	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|564288693|ref|YP_008874912.1|	-	1.9e-05	25.3	0.0	2.5e-05	24.9	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564288693|ref|YP_008874912.1|	-	0.00064	19.2	0.3	0.024	14.1	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SbcCD_C	PF13558.6	gi|564288693|ref|YP_008874912.1|	-	0.0012	19.0	0.1	0.011	15.9	0.1	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.6	gi|564288693|ref|YP_008874912.1|	-	0.011	14.4	0.0	0.06	12.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.6	gi|564288693|ref|YP_008874912.1|	-	0.012	15.3	1.4	0.021	14.5	0.1	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
DUF433	PF04255.14	gi|564288693|ref|YP_008874912.1|	-	0.019	14.8	0.0	0.47	10.4	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF433)
DUF155	PF02582.14	gi|564288693|ref|YP_008874912.1|	-	0.034	14.3	0.0	0.056	13.5	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	ACR,	YagE	family	COG1723
AAA_29	PF13555.6	gi|564288693|ref|YP_008874912.1|	-	0.047	13.4	0.1	0.1	12.3	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564288693|ref|YP_008874912.1|	-	0.064	13.6	0.1	0.16	12.3	0.1	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
MukB	PF04310.12	gi|564288693|ref|YP_008874912.1|	-	0.14	12.0	0.0	0.22	11.3	0.0	1.3	1	0	0	1	1	1	0	MukB	N-terminal
ABC_tran	PF00005.27	gi|564288694|ref|YP_008874913.1|	-	6.4e-28	98.0	0.0	8.2e-28	97.6	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.8	gi|564288694|ref|YP_008874913.1|	-	4.3e-11	42.5	0.1	8.7e-11	41.5	0.1	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_21	PF13304.6	gi|564288694|ref|YP_008874913.1|	-	2.4e-05	24.3	1.6	0.051	13.4	0.4	2.4	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564288694|ref|YP_008874913.1|	-	0.00035	20.3	0.0	0.00075	19.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564288694|ref|YP_008874913.1|	-	0.0035	17.7	0.1	0.0057	17.0	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564288694|ref|YP_008874913.1|	-	0.0058	16.5	0.0	0.0099	15.8	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|564288694|ref|YP_008874913.1|	-	0.007	16.9	0.2	0.0086	16.6	0.3	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564288694|ref|YP_008874913.1|	-	0.014	15.1	0.0	0.024	14.3	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564288694|ref|YP_008874913.1|	-	0.02	15.5	0.0	0.049	14.2	0.0	1.8	1	1	1	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564288694|ref|YP_008874913.1|	-	0.02	15.0	0.1	0.076	13.1	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|564288694|ref|YP_008874913.1|	-	0.029	14.7	0.0	0.07	13.4	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|564288694|ref|YP_008874913.1|	-	0.1	12.1	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_15	PF13175.6	gi|564288694|ref|YP_008874913.1|	-	0.13	11.9	0.0	0.32	10.6	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|564288694|ref|YP_008874913.1|	-	0.16	12.4	0.0	0.29	11.6	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Zeta_toxin	PF06414.12	gi|564288694|ref|YP_008874913.1|	-	0.17	11.1	0.0	0.27	10.5	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
SMC_N	PF02463.19	gi|564288694|ref|YP_008874913.1|	-	0.24	10.8	0.9	0.44	10.0	0.9	1.7	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
BPD_transp_2	PF02653.16	gi|564288695|ref|YP_008874914.1|	-	1e-35	123.2	37.2	1.6e-35	122.6	37.2	1.3	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|564288696|ref|YP_008874915.1|	-	3e-34	118.4	34.4	3.6e-34	118.2	34.4	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Ferric_reduct	PF01794.19	gi|564288696|ref|YP_008874915.1|	-	1.2	9.3	7.0	0.95	9.6	0.5	2.9	3	0	0	3	3	3	0	Ferric	reductase	like	transmembrane	component
Peripla_BP_6	PF13458.6	gi|564288697|ref|YP_008874916.1|	-	1.2e-66	225.8	7.7	1.5e-66	225.4	7.7	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564288697|ref|YP_008874916.1|	-	6.3e-18	64.9	1.7	1.1e-17	64.1	1.7	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.28	gi|564288697|ref|YP_008874916.1|	-	1.6e-07	30.8	0.0	2e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.9	gi|564288697|ref|YP_008874916.1|	-	0.00017	21.3	1.6	0.00041	20.1	1.6	1.7	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Peripla_BP_4	PF13407.6	gi|564288697|ref|YP_008874916.1|	-	0.0057	16.3	1.8	2.9	7.4	0.0	2.5	1	1	1	2	2	2	2	Periplasmic	binding	protein	domain
PAS_4	PF08448.10	gi|564288698|ref|YP_008874917.1|	-	0.1	12.9	2.0	6.6	7.0	0.4	3.2	1	1	1	2	2	2	0	PAS	fold
MgtE	PF01769.16	gi|564288699|ref|YP_008874918.1|	-	6.2e-19	68.6	8.4	6.2e-19	68.6	8.4	1.5	2	0	0	2	2	2	1	Divalent	cation	transporter
DUF2632	PF10943.8	gi|564288699|ref|YP_008874918.1|	-	0.2	11.2	2.4	0.26	10.8	2.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2632)
MgtE	PF01769.16	gi|564288700|ref|YP_008874919.1|	-	5.3e-22	78.5	13.2	5.3e-22	78.5	13.2	1.5	2	0	0	2	2	2	1	Divalent	cation	transporter
DUF1422	PF07226.11	gi|564288700|ref|YP_008874919.1|	-	1.4	8.9	6.9	0.11	12.5	1.3	2.1	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1422)
Acetyltransf_4	PF13420.7	gi|564288702|ref|YP_008874921.1|	-	4.4e-12	46.4	0.0	5.6e-12	46.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564288702|ref|YP_008874921.1|	-	2.7e-11	43.7	0.0	4.3e-11	43.1	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564288702|ref|YP_008874921.1|	-	2.5e-08	34.2	0.0	4.7e-08	33.3	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564288702|ref|YP_008874921.1|	-	1.9e-06	27.8	0.0	3.7e-06	26.9	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564288702|ref|YP_008874921.1|	-	2.4e-05	24.3	0.0	5.8e-05	23.1	0.0	1.7	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_9	PF13527.7	gi|564288702|ref|YP_008874921.1|	-	0.0004	20.5	0.0	0.001	19.2	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|564288702|ref|YP_008874921.1|	-	0.0019	18.4	0.7	0.011	15.9	0.1	2.3	2	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
LexA_DNA_bind	PF01726.16	gi|564288702|ref|YP_008874921.1|	-	0.16	11.8	0.0	0.31	10.8	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
CBS	PF00571.28	gi|564288703|ref|YP_008874922.1|	-	1.4e-28	99.1	10.6	1.5e-14	54.1	0.9	2.9	3	0	0	3	3	3	2	CBS	domain
MaoC_dehydratas	PF01575.19	gi|564288703|ref|YP_008874922.1|	-	5.7e-20	71.1	0.0	1.1e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564288703|ref|YP_008874922.1|	-	2.2e-06	27.8	0.0	4.5e-06	26.8	0.0	1.6	1	0	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT_2	PF13279.6	gi|564288703|ref|YP_008874922.1|	-	0.16	12.5	0.0	0.3	11.6	0.0	1.5	1	1	0	1	1	1	0	Thioesterase-like	superfamily
LTD	PF00932.19	gi|564288704|ref|YP_008874923.1|	-	7.5e-25	87.5	3.4	7.5e-25	87.5	3.4	1.8	2	0	0	2	2	2	1	Lamin	Tail	Domain
SNase	PF00565.17	gi|564288704|ref|YP_008874923.1|	-	8.4e-19	68.1	0.0	1.3e-18	67.4	0.0	1.3	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
PGM_PMM_II	PF02879.16	gi|564288704|ref|YP_008874923.1|	-	0.15	12.7	0.5	0.38	11.4	0.0	1.9	2	0	0	2	2	2	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
Oxidored_molyb	PF00174.19	gi|564288705|ref|YP_008874924.1|	-	9.7e-28	96.9	0.0	1.7e-27	96.1	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
DUF5345	PF17280.2	gi|564288705|ref|YP_008874924.1|	-	0.25	11.3	0.7	0.55	10.2	0.7	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5345)
HAD_2	PF13419.6	gi|564288707|ref|YP_008874926.1|	-	4.9e-20	72.3	0.0	6.8e-20	71.9	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564288707|ref|YP_008874926.1|	-	6.2e-10	39.7	0.9	1.2e-09	38.8	0.9	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564288707|ref|YP_008874926.1|	-	3.5e-08	33.4	0.3	1.5e-06	28.2	0.0	2.4	2	0	0	2	2	2	1	HAD-hyrolase-like
Glyco_hydro_20b	PF02838.15	gi|564288707|ref|YP_008874926.1|	-	0.15	12.9	0.6	2.7	8.8	0.3	2.2	1	1	1	2	2	2	0	Glycosyl	hydrolase	family	20,	domain	2
RNA_binding	PF01877.17	gi|564288708|ref|YP_008874927.1|	-	1.4e-09	38.3	0.1	6e-09	36.2	0.1	1.9	1	1	0	1	1	1	1	RNA	binding
GPP34	PF05719.11	gi|564288708|ref|YP_008874927.1|	-	0.013	15.6	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Golgi	phosphoprotein	3	(GPP34)
AAA_17	PF13207.6	gi|564288709|ref|YP_008874928.1|	-	2.2e-18	67.0	0.0	3.2e-18	66.5	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|564288709|ref|YP_008874928.1|	-	1.3e-12	48.4	0.0	1.6e-12	48.1	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564288709|ref|YP_008874928.1|	-	4.2e-05	23.7	0.0	6.5e-05	23.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|564288709|ref|YP_008874928.1|	-	0.00071	19.7	0.0	0.00083	19.5	0.0	1.2	1	0	0	1	1	1	1	Adenylate	kinase
PEP-utilizers	PF00391.23	gi|564288709|ref|YP_008874928.1|	-	0.0016	18.2	0.5	0.0044	16.7	0.5	1.7	1	1	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
CoaE	PF01121.20	gi|564288709|ref|YP_008874928.1|	-	0.016	14.9	0.0	0.062	13.0	0.1	1.8	2	0	0	2	2	2	0	Dephospho-CoA	kinase
polyprenyl_synt	PF00348.17	gi|564288710|ref|YP_008874929.1|	-	5e-56	189.6	0.0	6.1e-56	189.3	0.0	1.0	1	0	0	1	1	1	1	Polyprenyl	synthetase
ETF_alpha	PF00766.19	gi|564288711|ref|YP_008874930.1|	-	1.9e-35	120.8	0.9	4.7e-35	119.5	0.2	2.0	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|564288711|ref|YP_008874930.1|	-	7e-32	110.8	3.3	1e-31	110.3	3.3	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF	PF01012.21	gi|564288712|ref|YP_008874931.1|	-	7.6e-41	140.0	5.3	7.6e-41	140.0	5.3	1.4	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
HTH_IclR	PF09339.10	gi|564288713|ref|YP_008874932.1|	-	0.0093	15.7	0.0	0.02	14.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
ABC2_membrane_3	PF12698.7	gi|564288713|ref|YP_008874932.1|	-	0.076	12.1	0.0	0.17	10.9	0.0	1.5	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
BiPBP_C	PF06832.12	gi|564288714|ref|YP_008874933.1|	-	0.00039	20.4	0.5	0.0048	16.9	0.1	2.9	4	0	0	4	4	4	1	Penicillin-Binding	Protein	C-terminus	Family
SHOCT	PF09851.9	gi|564288714|ref|YP_008874933.1|	-	0.016	15.0	0.1	0.033	13.9	0.1	1.6	1	0	0	1	1	1	0	Short	C-terminal	domain
DUF4469	PF14734.6	gi|564288714|ref|YP_008874933.1|	-	6.7	7.0	6.5	93	3.3	0.1	3.8	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF4469)	with	IG-like	fold
Methyltransf_11	PF08241.12	gi|564288715|ref|YP_008874934.1|	-	1.3e-25	89.9	0.0	2.4e-25	89.0	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288715|ref|YP_008874934.1|	-	8.1e-23	81.0	0.0	1.7e-22	80.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288715|ref|YP_008874934.1|	-	2.9e-17	62.9	0.0	3.6e-17	62.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288715|ref|YP_008874934.1|	-	1.5e-16	60.4	0.0	6.8e-14	51.8	0.0	2.0	1	1	1	2	2	2	2	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|564288715|ref|YP_008874934.1|	-	7.6e-15	55.1	0.0	1.2e-14	54.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288715|ref|YP_008874934.1|	-	1.4e-14	54.7	0.0	2.1e-14	54.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|564288715|ref|YP_008874934.1|	-	2.4e-06	26.8	0.0	3.6e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_9	PF08003.11	gi|564288715|ref|YP_008874934.1|	-	2.7e-05	23.3	0.0	3.6e-05	22.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.12	gi|564288715|ref|YP_008874934.1|	-	9.4e-05	22.1	0.0	0.00013	21.6	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.19	gi|564288715|ref|YP_008874934.1|	-	0.00011	22.0	0.0	0.00013	21.8	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_2	PF00891.18	gi|564288715|ref|YP_008874934.1|	-	0.00036	19.9	0.0	0.00076	18.8	0.0	1.4	1	1	0	1	1	1	1	O-methyltransferase	domain
CMAS	PF02353.20	gi|564288715|ref|YP_008874934.1|	-	0.00052	19.4	0.0	0.00073	18.9	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.11	gi|564288715|ref|YP_008874934.1|	-	0.0087	15.7	0.0	0.011	15.3	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_29	PF03141.16	gi|564288715|ref|YP_008874934.1|	-	0.027	13.1	0.0	0.032	12.8	0.0	1.2	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.14	gi|564288715|ref|YP_008874934.1|	-	0.082	12.4	0.0	0.16	11.5	0.0	1.5	2	0	0	2	2	2	0	Methyltransferase	small	domain
FtsJ	PF01728.19	gi|564288715|ref|YP_008874934.1|	-	0.084	13.0	0.0	0.094	12.8	0.0	1.4	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_32	PF13679.6	gi|564288715|ref|YP_008874934.1|	-	0.2	11.6	0.0	0.28	11.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
V-ATPase_G	PF03179.15	gi|564288716|ref|YP_008874935.1|	-	0.00014	22.3	23.0	0.00032	21.2	23.0	1.6	1	1	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
ATP-synt_B	PF00430.18	gi|564288716|ref|YP_008874935.1|	-	0.00056	20.0	31.5	0.0013	18.8	31.5	1.7	1	1	0	1	1	1	1	ATP	synthase	B/B'	CF(0)
DUF883	PF05957.13	gi|564288716|ref|YP_008874935.1|	-	0.002	18.7	17.3	0.095	13.3	4.7	2.1	1	1	1	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF883)
HrpE	PF06188.12	gi|564288716|ref|YP_008874935.1|	-	0.004	17.0	10.2	0.0051	16.7	10.2	1.2	1	0	0	1	1	1	1	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
V-ATPase_G_2	PF16999.5	gi|564288716|ref|YP_008874935.1|	-	0.0058	17.0	29.9	0.01	16.2	29.9	1.4	1	1	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
PIN_8	PF18476.1	gi|564288716|ref|YP_008874935.1|	-	0.034	14.0	7.2	0.039	13.8	7.2	1.1	1	0	0	1	1	1	0	PIN	like	domain
DUF3552	PF12072.8	gi|564288716|ref|YP_008874935.1|	-	0.04	13.3	27.4	0.52	9.7	19.2	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
DivIVA	PF05103.13	gi|564288716|ref|YP_008874935.1|	-	0.068	13.3	20.3	0.53	10.4	8.8	2.2	1	1	1	2	2	2	0	DivIVA	protein
Sds3	PF08598.11	gi|564288716|ref|YP_008874935.1|	-	0.086	12.8	8.9	0.11	12.4	8.9	1.2	1	0	0	1	1	1	0	Sds3-like
Apolipoprotein	PF01442.18	gi|564288716|ref|YP_008874935.1|	-	0.1	12.5	21.4	0.17	11.7	21.4	1.3	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
YtxH	PF12732.7	gi|564288716|ref|YP_008874935.1|	-	0.11	13.0	13.5	37	4.9	13.5	2.3	1	1	0	1	1	1	0	YtxH-like	protein
Mitofilin	PF09731.9	gi|564288716|ref|YP_008874935.1|	-	0.16	10.8	18.1	0.18	10.6	18.1	1.1	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
Atg14	PF10186.9	gi|564288716|ref|YP_008874935.1|	-	0.37	9.8	8.4	0.42	9.6	8.4	1.1	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF2514	PF10721.9	gi|564288716|ref|YP_008874935.1|	-	0.4	10.7	13.4	0.51	10.3	13.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2514)
Remorin_C	PF03763.13	gi|564288716|ref|YP_008874935.1|	-	1.1	9.2	18.8	0.57	10.1	6.2	2.1	1	1	1	2	2	2	0	Remorin,	C-terminal	region
OmpH	PF03938.14	gi|564288716|ref|YP_008874935.1|	-	1.1	9.6	18.0	1.4	9.3	18.0	1.1	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
dCache_2	PF08269.11	gi|564288716|ref|YP_008874935.1|	-	1.8	7.6	5.6	0.88	8.7	3.7	1.5	1	1	0	1	1	1	0	Cache	domain
Caudo_TAP	PF02413.17	gi|564288716|ref|YP_008874935.1|	-	2.5	8.3	15.8	37	4.5	9.1	2.3	1	1	1	2	2	2	0	Caudovirales	tail	fibre	assembly	protein,	lambda	gpK
HSP70	PF00012.20	gi|564288716|ref|YP_008874935.1|	-	3.1	5.9	14.0	3.6	5.6	14.0	1.0	1	0	0	1	1	1	0	Hsp70	protein
DUF4407	PF14362.6	gi|564288716|ref|YP_008874935.1|	-	7.7	5.8	12.7	10	5.4	12.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
kleA_kleC	PF17383.2	gi|564288716|ref|YP_008874935.1|	-	8	6.9	18.2	0.12	12.7	3.9	2.7	1	1	1	2	2	2	0	Uncharacterized	KorC	regulated	protein	A
V_ATPase_I	PF01496.19	gi|564288717|ref|YP_008874936.1|	-	3.2e-15	55.2	7.8	1.4e-07	29.9	0.1	4.2	3	2	0	3	3	3	2	V-type	ATPase	116kDa	subunit	family
FlaC_arch	PF05377.11	gi|564288717|ref|YP_008874936.1|	-	0.0037	17.6	5.1	2.2	8.8	0.0	2.6	2	0	0	2	2	2	2	Flagella	accessory	protein	C	(FlaC)
DUF4140	PF13600.6	gi|564288717|ref|YP_008874936.1|	-	0.0051	17.2	4.0	0.13	12.7	0.8	2.4	2	0	0	2	2	2	1	N-terminal	domain	of	unknown	function	(DUF4140)
Prefoldin_2	PF01920.20	gi|564288717|ref|YP_008874936.1|	-	0.012	15.6	1.1	3.7	7.5	0.1	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
CCDC-167	PF15188.6	gi|564288717|ref|YP_008874936.1|	-	0.023	15.0	2.4	0.49	10.8	0.1	2.5	2	0	0	2	2	2	0	Coiled-coil	domain-containing	protein	167
EMP24_GP25L	PF01105.24	gi|564288717|ref|YP_008874936.1|	-	0.039	13.9	0.4	5.4	6.9	0.1	2.2	2	0	0	2	2	2	0	emp24/gp25L/p24	family/GOLD
Tektin	PF03148.14	gi|564288717|ref|YP_008874936.1|	-	0.042	12.6	1.3	0.66	8.7	0.0	2.0	2	0	0	2	2	2	0	Tektin	family
BBS2_C	PF14782.6	gi|564288717|ref|YP_008874936.1|	-	0.072	11.8	0.0	0.13	11.0	0.0	1.3	1	0	0	1	1	1	0	Ciliary	BBSome	complex	subunit	2,	C-terminal
DHR10	PF18595.1	gi|564288717|ref|YP_008874936.1|	-	0.083	12.9	5.2	1.1	9.3	0.4	2.3	2	0	0	2	2	2	0	Designed	helical	repeat	protein	10	domain
CENP-F_leu_zip	PF10473.9	gi|564288717|ref|YP_008874936.1|	-	0.21	11.6	3.6	6.7	6.7	0.9	2.3	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tnp_22_trimer	PF17489.2	gi|564288717|ref|YP_008874936.1|	-	0.28	11.2	3.3	1.4	8.9	0.1	3.0	2	1	1	3	3	3	0	L1	transposable	element	trimerization	domain
APG6_N	PF17675.1	gi|564288717|ref|YP_008874936.1|	-	0.32	11.5	8.6	0.83	10.2	3.1	2.4	2	0	0	2	2	2	0	Apg6	coiled-coil	region
Nas2_N	PF18265.1	gi|564288717|ref|YP_008874936.1|	-	0.36	10.8	1.4	16	5.5	0.8	2.5	2	0	0	2	2	2	0	Nas2	N_terminal	domain
Syntaxin-6_N	PF09177.11	gi|564288717|ref|YP_008874936.1|	-	0.41	11.2	1.6	16	6.1	0.1	2.5	2	0	0	2	2	2	0	Syntaxin	6,	N-terminal
Spc24	PF08286.11	gi|564288717|ref|YP_008874936.1|	-	0.65	10.3	2.6	26	5.1	1.0	2.3	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
Rho_Binding	PF08912.11	gi|564288717|ref|YP_008874936.1|	-	0.66	10.8	3.4	3.7	8.4	1.1	2.3	2	0	0	2	2	2	0	Rho	Binding
MscS_porin	PF12795.7	gi|564288717|ref|YP_008874936.1|	-	0.82	9.2	5.6	1.5	8.3	1.7	2.1	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
TPD52	PF04201.15	gi|564288717|ref|YP_008874936.1|	-	5.2	6.6	5.0	33	4.1	0.2	2.3	2	0	0	2	2	2	0	Tumour	protein	D52	family
DUF4164	PF13747.6	gi|564288717|ref|YP_008874936.1|	-	8.1	6.8	8.4	7.9	6.8	0.4	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
DUF4407	PF14362.6	gi|564288717|ref|YP_008874936.1|	-	8.2	5.7	5.9	16	4.8	0.2	2.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
ATP-synt_C	PF00137.21	gi|564288718|ref|YP_008874937.1|	-	3.1e-14	53.1	11.2	3.1e-14	53.1	11.2	1.5	2	0	0	2	2	2	1	ATP	synthase	subunit	C
vATP-synt_E	PF01991.18	gi|564288719|ref|YP_008874938.1|	-	2.1e-41	141.5	8.6	2.8e-41	141.1	8.6	1.2	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
V-ATPase_G_2	PF16999.5	gi|564288719|ref|YP_008874938.1|	-	0.0031	17.9	18.0	0.006	17.0	18.0	1.5	1	0	0	1	1	1	1	Vacuolar	(H+)-ATPase	G	subunit
DivIVA	PF05103.13	gi|564288719|ref|YP_008874938.1|	-	0.091	12.9	14.8	0.053	13.6	11.5	2.2	1	1	1	2	2	2	0	DivIVA	protein
ATP-synt_B	PF00430.18	gi|564288719|ref|YP_008874938.1|	-	0.28	11.3	26.8	0.71	10.0	24.2	2.1	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
LPP20	PF02169.16	gi|564288719|ref|YP_008874938.1|	-	0.42	11.0	2.2	2.9	8.3	0.1	2.7	2	2	1	3	3	3	0	LPP20	lipoprotein
HrpE	PF06188.12	gi|564288719|ref|YP_008874938.1|	-	1.4	8.7	12.4	3.1	7.6	12.4	1.6	1	1	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
T4_Rnl2_C	PF18043.1	gi|564288719|ref|YP_008874938.1|	-	2.5	8.3	0.0	2.5	8.3	0.0	3.5	3	1	1	4	4	4	0	T4	RNA	ligase	2	C-terminal
vATP-synt_AC39	PF01992.16	gi|564288720|ref|YP_008874939.1|	-	2.9e-82	276.9	2.9	3.2e-82	276.7	2.9	1.0	1	0	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
DUF3209	PF11483.8	gi|564288720|ref|YP_008874939.1|	-	0.044	14.2	1.1	1.3	9.5	0.2	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3209)
ATP-synt_F	PF01990.17	gi|564288721|ref|YP_008874940.1|	-	5.5e-15	55.5	0.0	6.2e-15	55.3	0.0	1.1	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
ATP-synt_ab	PF00006.25	gi|564288722|ref|YP_008874941.1|	-	3.2e-93	311.2	0.0	4.4e-93	310.8	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|564288722|ref|YP_008874941.1|	-	2.5e-40	137.1	0.1	4.1e-40	136.4	0.1	1.4	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
ATP-synt_ab_N	PF02874.23	gi|564288722|ref|YP_008874941.1|	-	5.5e-12	46.0	3.6	2e-11	44.2	3.6	2.1	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
Peptidase_M23	PF01551.22	gi|564288722|ref|YP_008874941.1|	-	0.012	15.8	0.2	2.7	8.3	0.0	2.7	3	0	0	3	3	3	0	Peptidase	family	M23
QRPTase_N	PF02749.16	gi|564288722|ref|YP_008874941.1|	-	0.025	14.6	0.2	12	6.0	0.0	2.8	3	0	0	3	3	3	0	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
AAA_22	PF13401.6	gi|564288722|ref|YP_008874941.1|	-	0.034	14.4	0.0	0.068	13.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Npun_R1517	PF18068.1	gi|564288722|ref|YP_008874941.1|	-	0.14	12.5	0.2	0.45	10.9	0.0	1.9	2	0	0	2	2	2	0	Npun	R1517
ATP-synt_ab	PF00006.25	gi|564288723|ref|YP_008874942.1|	-	1.8e-65	220.6	0.0	2.5e-65	220.1	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_N	PF02874.23	gi|564288723|ref|YP_008874942.1|	-	1.5e-15	57.4	0.4	4.5e-15	55.9	0.4	1.9	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.10	gi|564288723|ref|YP_008874942.1|	-	0.00017	21.7	0.4	0.00072	19.7	0.4	2.1	1	0	0	1	1	1	1	HAS	barrel	domain
Bac_rhodopsin	PF01036.18	gi|564288724|ref|YP_008874943.1|	-	5.2e-74	248.6	19.4	5.9e-74	248.4	19.4	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
SUR7	PF06687.12	gi|564288724|ref|YP_008874943.1|	-	0.078	12.6	1.5	0.5	10.0	0.1	2.3	2	1	0	2	2	2	0	SUR7/PalI	family
DUF4149	PF13664.6	gi|564288724|ref|YP_008874943.1|	-	0.1	13.0	5.6	4.1	7.8	0.2	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
DUF4131	PF13567.6	gi|564288724|ref|YP_008874943.1|	-	0.25	11.0	13.7	0.35	10.5	4.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF1461	PF07314.11	gi|564288724|ref|YP_008874943.1|	-	2.2	8.2	4.9	0.48	10.3	1.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1461)
ATP-synt_D	PF01813.17	gi|564288725|ref|YP_008874944.1|	-	2e-54	184.4	10.4	2.4e-54	184.2	10.4	1.1	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DUF948	PF06103.11	gi|564288725|ref|YP_008874944.1|	-	0.23	11.8	1.7	4.6	7.6	0.1	2.7	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF1272	PF06906.11	gi|564288726|ref|YP_008874945.1|	-	0.11	12.7	1.0	0.19	11.8	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf_Rg	PF17915.1	gi|564288726|ref|YP_008874945.1|	-	0.65	9.4	2.5	0.75	9.2	0.2	2.0	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
zf-ribbon_3	PF13248.6	gi|564288726|ref|YP_008874945.1|	-	1.1	8.8	3.7	3.3	7.2	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
eRF1_2	PF03464.15	gi|564288727|ref|YP_008874946.1|	-	1.3e-42	145.3	0.0	3.4e-42	143.9	0.0	1.7	2	0	0	2	2	2	1	eRF1	domain	2
eRF1_3	PF03465.15	gi|564288727|ref|YP_008874946.1|	-	9.2e-29	100.2	0.3	2.7e-28	98.7	0.1	1.9	2	0	0	2	2	2	1	eRF1	domain	3
acVLRF1	PF18859.1	gi|564288727|ref|YP_008874946.1|	-	2.5e-17	63.4	0.5	5.4e-17	62.3	0.1	1.7	2	0	0	2	2	2	1	Actinobacteria/chloroflexi	VLRF1	release	factor
baeRF_family10	PF18854.1	gi|564288727|ref|YP_008874946.1|	-	1.2e-14	54.8	0.2	1.2e-13	51.5	0.1	2.3	2	0	0	2	2	2	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
eRF1_1	PF03463.15	gi|564288727|ref|YP_008874946.1|	-	7.6e-08	32.4	0.0	1.2e-07	31.8	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
baeRF_family12	PF18856.1	gi|564288727|ref|YP_008874946.1|	-	0.0092	16.6	0.0	0.024	15.2	0.0	1.7	1	0	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	12
Zn-ribbon_8	PF09723.10	gi|564288727|ref|YP_008874946.1|	-	0.079	13.1	1.2	0.14	12.3	0.3	1.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
O-FucT	PF10250.9	gi|564288727|ref|YP_008874946.1|	-	0.11	12.1	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	GDP-fucose	protein	O-fucosyltransferase
AAA_31	PF13614.6	gi|564288728|ref|YP_008874947.1|	-	1.1e-18	67.8	0.0	1.9e-18	67.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|564288728|ref|YP_008874947.1|	-	3.9e-18	65.8	8.7	3.4e-16	59.5	8.7	2.8	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|564288728|ref|YP_008874947.1|	-	1.3e-16	60.8	0.0	2.4e-16	60.0	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|564288728|ref|YP_008874947.1|	-	3.8e-09	36.4	0.0	6.4e-09	35.6	0.0	1.4	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
MipZ	PF09140.11	gi|564288728|ref|YP_008874947.1|	-	1.7e-08	34.1	0.4	3.9e-08	32.9	0.4	1.5	1	1	0	1	1	1	1	ATPase	MipZ
AAA_26	PF13500.6	gi|564288728|ref|YP_008874947.1|	-	3.4e-07	30.3	4.1	1.6e-06	28.1	0.3	2.9	2	1	0	2	2	2	1	AAA	domain
Fer4_NifH	PF00142.18	gi|564288728|ref|YP_008874947.1|	-	5e-07	29.4	0.4	0.00093	18.7	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|564288728|ref|YP_008874947.1|	-	3.2e-05	23.3	2.5	9.8e-05	21.7	1.1	2.1	1	1	0	2	2	2	1	Anion-transporting	ATPase
SRP54	PF00448.22	gi|564288728|ref|YP_008874947.1|	-	0.0002	21.0	2.3	0.013	15.1	0.5	2.4	2	1	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.6	gi|564288728|ref|YP_008874947.1|	-	0.00094	19.0	0.0	0.0015	18.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MeaB	PF03308.16	gi|564288728|ref|YP_008874947.1|	-	0.00096	18.2	2.2	0.12	11.3	0.3	2.2	2	0	0	2	2	2	2	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
DUF1611	PF07755.11	gi|564288728|ref|YP_008874947.1|	-	0.0031	16.8	1.0	0.067	12.5	0.1	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
CLP1_P	PF16575.5	gi|564288728|ref|YP_008874947.1|	-	0.0052	16.6	0.1	0.011	15.6	0.1	1.5	1	0	0	1	1	1	1	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
VirC1	PF07015.11	gi|564288728|ref|YP_008874947.1|	-	0.016	14.5	0.9	0.062	12.6	0.3	1.9	2	0	0	2	2	2	0	VirC1	protein
AAA_25	PF13481.6	gi|564288728|ref|YP_008874947.1|	-	0.043	13.4	3.1	0.061	12.9	1.5	2.0	2	1	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.20	gi|564288728|ref|YP_008874947.1|	-	0.046	13.6	0.0	0.078	12.9	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
MobB	PF03205.14	gi|564288728|ref|YP_008874947.1|	-	0.13	12.2	0.1	1	9.2	0.1	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
KTI12	PF08433.10	gi|564288728|ref|YP_008874947.1|	-	0.22	10.9	0.0	0.36	10.3	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
HTH_10	PF04967.12	gi|564288729|ref|YP_008874948.1|	-	3.7e-22	77.9	0.3	5.8e-22	77.2	0.3	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564288729|ref|YP_008874948.1|	-	0.0028	17.5	0.8	0.0071	16.2	0.8	1.7	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_1	PF00126.27	gi|564288729|ref|YP_008874948.1|	-	0.04	13.9	0.7	0.12	12.4	0.7	1.9	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4	PF04545.16	gi|564288729|ref|YP_008874948.1|	-	0.075	12.6	0.4	0.17	11.5	0.4	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
Fibrinogen_BP	PF08017.11	gi|564288729|ref|YP_008874948.1|	-	0.13	10.7	0.0	0.15	10.4	0.0	1.1	1	0	0	1	1	1	0	Fibrinogen	binding	protein
HTH_30	PF13556.6	gi|564288729|ref|YP_008874948.1|	-	0.19	11.6	1.0	0.45	10.3	0.2	2.0	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
HTH_22	PF13309.6	gi|564288729|ref|YP_008874948.1|	-	0.19	11.8	0.0	0.31	11.1	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
Abhydrolase_6	PF12697.7	gi|564288730|ref|YP_008874949.1|	-	4.2e-17	63.5	9.8	4.9e-17	63.3	9.8	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|564288730|ref|YP_008874949.1|	-	4.5e-07	29.8	0.0	0.00064	19.5	0.0	2.1	1	1	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564288730|ref|YP_008874949.1|	-	0.0029	16.9	0.0	0.014	14.6	0.0	2.0	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_8	PF06259.12	gi|564288730|ref|YP_008874949.1|	-	0.0031	17.2	0.0	0.0047	16.6	0.0	1.3	1	0	0	1	1	1	1	Alpha/beta	hydrolase
Abhydrolase_4	PF08386.10	gi|564288730|ref|YP_008874949.1|	-	0.013	15.7	0.0	0.026	14.6	0.0	1.5	1	0	0	1	1	1	0	TAP-like	protein
Thioesterase	PF00975.20	gi|564288730|ref|YP_008874949.1|	-	0.015	15.4	0.0	0.022	14.9	0.0	1.3	1	0	0	1	1	1	0	Thioesterase	domain
PAF-AH_p_II	PF03403.13	gi|564288730|ref|YP_008874949.1|	-	0.12	10.8	0.0	0.16	10.4	0.0	1.1	1	0	0	1	1	1	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
DUF2974	PF11187.8	gi|564288730|ref|YP_008874949.1|	-	0.14	11.7	0.0	0.19	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2974)
tRNA-synt_1d	PF00750.19	gi|564288731|ref|YP_008874950.1|	-	1.4e-37	129.5	0.0	1.9e-37	129.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.15	gi|564288731|ref|YP_008874950.1|	-	1.6e-35	121.9	0.0	5.1e-35	120.2	0.0	1.9	1	0	0	1	1	1	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.16	gi|564288731|ref|YP_008874950.1|	-	3.4e-10	40.4	0.0	1.1e-09	38.7	0.0	1.9	1	0	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1f	PF01921.18	gi|564288731|ref|YP_008874950.1|	-	0.0093	14.9	0.0	0.071	12.0	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1e	PF01406.19	gi|564288731|ref|YP_008874950.1|	-	0.034	13.5	0.0	0.056	12.8	0.0	1.3	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(C)	catalytic	domain
Peptidase_M50	PF02163.22	gi|564288732|ref|YP_008874951.1|	-	1.2e-24	86.9	0.0	2.1e-24	86.1	0.0	1.5	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.6	gi|564288732|ref|YP_008874951.1|	-	5.6e-23	81.1	2.1	2.1e-08	34.4	0.0	3.4	1	1	2	3	3	3	3	PDZ	domain
PDZ_6	PF17820.1	gi|564288732|ref|YP_008874951.1|	-	2e-14	53.2	1.3	2.6e-08	33.6	1.0	3.5	3	0	0	3	3	3	3	PDZ	domain
Tricorn_PDZ	PF14685.6	gi|564288732|ref|YP_008874951.1|	-	8.1e-12	45.0	7.5	2.2e-06	27.6	1.2	3.5	2	1	1	3	3	3	3	Tricorn	protease	PDZ	domain
PDZ	PF00595.24	gi|564288732|ref|YP_008874951.1|	-	1.1e-09	38.5	5.9	1.1e-06	28.9	0.8	3.7	3	1	1	4	4	4	2	PDZ	domain
PDZ_1	PF12812.7	gi|564288732|ref|YP_008874951.1|	-	0.036	14.1	0.1	13	5.9	0.0	3.2	3	0	0	3	3	3	0	PDZ-like	domain
PDZ_3	PF17815.1	gi|564288732|ref|YP_008874951.1|	-	0.17	11.7	0.0	1	9.2	0.1	2.0	2	0	0	2	2	2	0	PDZ	domain
Myosin_N	PF02736.19	gi|564288732|ref|YP_008874951.1|	-	7.7	6.4	6.2	3	7.8	0.5	2.6	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
Usp	PF00582.26	gi|564288733|ref|YP_008874952.1|	-	5e-55	185.9	11.3	2.4e-29	102.7	1.2	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
CbiJ	PF02571.14	gi|564288733|ref|YP_008874952.1|	-	0.057	12.9	0.2	0.24	10.9	0.1	1.9	2	0	0	2	2	2	0	Precorrin-6x	reductase	CbiJ/CobK
DUF4428	PF14471.6	gi|564288734|ref|YP_008874953.1|	-	0.0081	16.1	1.2	0.028	14.3	1.2	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
Endonuclease_7	PF02945.15	gi|564288734|ref|YP_008874953.1|	-	0.016	15.1	0.1	0.016	15.1	0.1	1.0	1	0	0	1	1	1	0	Recombination	endonuclease	VII
LPMO_10	PF03067.15	gi|564288734|ref|YP_008874953.1|	-	0.028	15.1	0.0	0.028	15.1	0.0	1.1	1	0	0	1	1	1	0	Lytic	polysaccharide	mono-oxygenase,	cellulose-degrading
FYVE	PF01363.21	gi|564288734|ref|YP_008874953.1|	-	0.049	13.8	0.2	0.068	13.3	0.2	1.1	1	0	0	1	1	1	0	FYVE	zinc	finger
AdoMet_dc	PF02675.15	gi|564288734|ref|YP_008874953.1|	-	0.057	13.7	0.1	0.06	13.6	0.1	1.2	1	0	0	1	1	1	0	S-adenosylmethionine	decarboxylase
Elf1	PF05129.13	gi|564288734|ref|YP_008874953.1|	-	0.12	12.4	0.6	0.49	10.5	0.6	1.8	1	1	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
tRNA-synt_1f	PF01921.18	gi|564288735|ref|YP_008874954.1|	-	3.1e-102	342.2	0.0	4.4e-102	341.7	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1g	PF09334.11	gi|564288735|ref|YP_008874954.1|	-	1.5e-07	30.6	0.0	5.9e-05	22.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|564288735|ref|YP_008874954.1|	-	0.00037	19.9	0.0	0.014	14.8	0.0	2.8	4	0	0	4	4	4	1	tRNA	synthetases	class	I	(C)	catalytic	domain
Baculo_LEF5_C	PF11792.8	gi|564288735|ref|YP_008874954.1|	-	0.013	15.2	0.3	0.37	10.5	0.0	2.6	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
tRNA-synt_1b	PF00579.25	gi|564288735|ref|YP_008874954.1|	-	0.14	11.4	0.0	2.6	7.3	0.0	2.1	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(W	and	Y)
AA_kinase	PF00696.28	gi|564288736|ref|YP_008874955.1|	-	4e-29	101.9	3.5	1e-28	100.6	3.5	1.6	1	1	0	1	1	1	1	Amino	acid	kinase	family
Peptidase_M50	PF02163.22	gi|564288738|ref|YP_008874957.1|	-	1.1e-14	54.4	7.8	1.2e-11	44.3	7.8	2.3	1	1	0	1	1	1	1	Peptidase	family	M50
AIRS	PF00586.24	gi|564288739|ref|YP_008874958.1|	-	1.1e-18	67.7	5.7	2e-18	66.8	5.7	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|564288739|ref|YP_008874958.1|	-	2.2e-09	37.7	0.0	3.7e-09	36.9	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
LPG_synthase_TM	PF03706.13	gi|564288740|ref|YP_008874959.1|	-	4.8e-38	131.4	42.4	6e-38	131.1	42.4	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Ribosomal_S19e	PF01090.19	gi|564288741|ref|YP_008874960.1|	-	1.2e-48	164.2	0.0	1.4e-48	164.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
MarR_2	PF12802.7	gi|564288741|ref|YP_008874960.1|	-	0.004	17.0	0.9	0.04	13.8	0.0	2.6	3	0	0	3	3	3	1	MarR	family
GntR	PF00392.21	gi|564288741|ref|YP_008874960.1|	-	0.013	15.1	0.0	0.2	11.3	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
Mrr_N	PF14338.6	gi|564288741|ref|YP_008874960.1|	-	0.016	15.3	0.2	0.33	11.1	0.0	2.2	2	0	0	2	2	2	0	Mrr	N-terminal	domain
dsDNA_bind	PF01984.20	gi|564288742|ref|YP_008874961.1|	-	4e-25	88.3	13.9	4.8e-25	88.0	13.9	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
cwf18	PF08315.12	gi|564288742|ref|YP_008874961.1|	-	0.054	14.2	10.1	0.065	13.9	10.1	1.1	1	0	0	1	1	1	0	cwf18	pre-mRNA	splicing	factor
DUF1054	PF06335.12	gi|564288742|ref|YP_008874961.1|	-	0.35	10.8	3.0	0.4	10.6	3.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1054)
Asn_synthase	PF00733.21	gi|564288743|ref|YP_008874962.1|	-	0.01	15.5	0.0	0.015	15.0	0.0	1.2	1	0	0	1	1	1	0	Asparagine	synthase
QueC	PF06508.13	gi|564288743|ref|YP_008874962.1|	-	0.033	13.7	0.0	0.042	13.3	0.0	1.2	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
Diphthami_syn_2	PF01902.17	gi|564288743|ref|YP_008874962.1|	-	0.058	12.9	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	Diphthamide	synthase
ATPase	PF06745.13	gi|564288744|ref|YP_008874963.1|	-	3.2e-11	43.0	0.0	1.5e-06	27.7	0.0	2.0	1	1	1	2	2	2	2	KaiC
Rad51	PF08423.11	gi|564288744|ref|YP_008874963.1|	-	0.025	13.9	0.0	0.08	12.2	0.0	1.7	2	0	0	2	2	2	0	Rad51
GvpD	PF07088.11	gi|564288744|ref|YP_008874963.1|	-	0.075	11.6	0.1	0.53	8.8	0.0	2.0	1	1	0	2	2	2	0	GvpD	gas	vesicle	protein
PAXNEB	PF05625.11	gi|564288744|ref|YP_008874963.1|	-	0.096	11.8	0.0	0.73	8.9	0.0	1.9	2	0	0	2	2	2	0	PAXNEB	protein
tRNA-synt_His	PF13393.6	gi|564288745|ref|YP_008874964.1|	-	2.5e-55	187.9	0.1	3.3e-55	187.6	0.1	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
HGTP_anticodon	PF03129.20	gi|564288745|ref|YP_008874964.1|	-	1.6e-11	44.2	0.0	3.5e-11	43.1	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|564288745|ref|YP_008874964.1|	-	7.8e-10	39.0	0.0	1.3e-09	38.3	0.0	1.6	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Autoind_bind	PF03472.15	gi|564288745|ref|YP_008874964.1|	-	0.075	12.5	0.0	0.3	10.5	0.0	2.0	2	0	0	2	2	2	0	Autoinducer	binding	domain
SHOCT	PF09851.9	gi|564288746|ref|YP_008874965.1|	-	2.1e-09	36.8	0.2	3e-09	36.3	0.2	1.3	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|564288746|ref|YP_008874965.1|	-	5.6e-05	23.1	1.4	7e-05	22.8	0.5	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1707)
GvpG	PF05120.12	gi|564288746|ref|YP_008874965.1|	-	0.082	12.9	0.7	0.11	12.5	0.7	1.3	1	0	0	1	1	1	0	Gas	vesicle	protein	G
Acetyltransf_1	PF00583.25	gi|564288748|ref|YP_008874967.1|	-	9.4e-17	61.3	0.0	1.2e-16	61.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564288748|ref|YP_008874967.1|	-	2.6e-13	50.2	0.0	5.5e-13	49.1	0.0	1.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564288748|ref|YP_008874967.1|	-	6.3e-12	45.5	0.0	8.5e-12	45.1	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564288748|ref|YP_008874967.1|	-	2.1e-08	35.0	0.0	2.5e-08	34.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564288748|ref|YP_008874967.1|	-	1e-06	28.9	0.0	0.033	14.3	0.0	2.1	2	0	0	2	2	2	2	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564288748|ref|YP_008874967.1|	-	5.6e-06	26.2	0.0	8.7e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|564288748|ref|YP_008874967.1|	-	8.5e-05	22.7	0.0	0.00012	22.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|564288748|ref|YP_008874967.1|	-	0.03	14.0	0.0	0.11	12.1	0.0	1.9	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564288748|ref|YP_008874967.1|	-	0.095	12.8	0.0	0.21	11.7	0.0	1.6	1	1	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.6	gi|564288748|ref|YP_008874967.1|	-	0.18	11.8	0.0	2.5	8.2	0.0	2.1	2	0	0	2	2	2	0	ESCO1/2	acetyl-transferase
PseudoU_synth_1	PF01416.20	gi|564288749|ref|YP_008874968.1|	-	2.6e-17	63.2	0.0	1.7e-14	54.2	0.0	2.3	2	0	0	2	2	2	2	tRNA	pseudouridine	synthase
Peptidase_M3	PF01432.20	gi|564288750|ref|YP_008874969.1|	-	1.4e-68	232.2	1.8	1.4e-68	232.2	1.8	1.7	2	0	0	2	2	2	1	Peptidase	family	M3
Peptidase_M3_N	PF08439.10	gi|564288750|ref|YP_008874969.1|	-	4.7e-23	81.2	0.1	4.7e-23	81.2	0.1	3.2	3	0	0	3	3	3	1	Oligopeptidase	F
Reprolysin_3	PF13582.6	gi|564288750|ref|YP_008874969.1|	-	0.46	11.0	0.1	0.46	11.0	0.1	2.5	3	0	0	3	3	3	0	Metallo-peptidase	family	M12B	Reprolysin-like
AAA	PF00004.29	gi|564288751|ref|YP_008874970.1|	-	5.2e-43	146.6	1.3	8.5e-43	145.9	0.1	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|564288751|ref|YP_008874970.1|	-	1e-12	47.6	0.9	8.3e-12	44.7	0.3	2.7	2	0	0	2	2	2	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|564288751|ref|YP_008874970.1|	-	6.6e-08	32.9	0.1	1.6e-07	31.6	0.1	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|564288751|ref|YP_008874970.1|	-	4.4e-07	29.8	0.2	3.5e-06	26.8	0.0	2.3	3	0	0	3	3	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|564288751|ref|YP_008874970.1|	-	1.2e-05	25.8	4.2	0.00081	19.8	0.1	3.3	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|564288751|ref|YP_008874970.1|	-	1.8e-05	24.8	1.9	4.3e-05	23.5	0.3	2.5	2	1	0	2	2	1	1	AAA	domain	(dynein-related	subfamily)
DUF815	PF05673.13	gi|564288751|ref|YP_008874970.1|	-	0.00012	21.4	0.0	0.00023	20.4	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_22	PF13401.6	gi|564288751|ref|YP_008874970.1|	-	0.00031	21.0	4.0	0.0027	18.0	0.3	3.1	2	1	0	2	2	2	1	AAA	domain
Rootletin	PF15035.6	gi|564288751|ref|YP_008874970.1|	-	0.001	19.1	2.6	0.002	18.2	2.6	1.4	1	0	0	1	1	1	1	Ciliary	rootlet	component,	centrosome	cohesion
TIP49	PF06068.13	gi|564288751|ref|YP_008874970.1|	-	0.0011	18.3	0.0	0.0022	17.3	0.0	1.6	1	0	0	1	1	1	1	TIP49	P-loop	domain
Taxilin	PF09728.9	gi|564288751|ref|YP_008874970.1|	-	0.0022	17.2	1.5	0.0037	16.5	1.5	1.2	1	0	0	1	1	1	1	Myosin-like	coiled-coil	protein
AAA_33	PF13671.6	gi|564288751|ref|YP_008874970.1|	-	0.0023	18.1	0.4	0.0062	16.7	0.1	2.0	2	1	0	2	2	1	1	AAA	domain
Prot_ATP_ID_OB	PF16450.5	gi|564288751|ref|YP_008874970.1|	-	0.003	17.5	0.5	0.0075	16.2	0.1	2.0	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	C-terminal	domain
Sigma54_activat	PF00158.26	gi|564288751|ref|YP_008874970.1|	-	0.0035	17.1	0.3	0.045	13.5	0.0	2.4	2	1	0	2	2	2	1	Sigma-54	interaction	domain
AAA_28	PF13521.6	gi|564288751|ref|YP_008874970.1|	-	0.0036	17.6	1.7	0.0094	16.2	0.1	2.4	2	1	0	2	2	2	1	AAA	domain
ApoO	PF09769.9	gi|564288751|ref|YP_008874970.1|	-	0.005	16.8	0.0	0.46	10.5	0.0	2.3	2	0	0	2	2	2	1	Apolipoprotein	O
NACHT	PF05729.12	gi|564288751|ref|YP_008874970.1|	-	0.0071	16.3	0.3	0.056	13.4	0.1	2.3	1	1	1	2	2	2	1	NACHT	domain
Mg_chelatase	PF01078.21	gi|564288751|ref|YP_008874970.1|	-	0.0077	15.6	0.0	0.016	14.6	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_14	PF13173.6	gi|564288751|ref|YP_008874970.1|	-	0.0088	16.1	0.1	0.023	14.7	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
COG6	PF06419.11	gi|564288751|ref|YP_008874970.1|	-	0.0095	14.2	1.1	0.015	13.6	1.1	1.2	1	0	0	1	1	1	1	Conserved	oligomeric	complex	COG6
AAA_3	PF07726.11	gi|564288751|ref|YP_008874970.1|	-	0.01	15.7	0.0	0.024	14.5	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
GAS	PF13851.6	gi|564288751|ref|YP_008874970.1|	-	0.014	14.8	0.6	0.029	13.7	0.6	1.5	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Zeta_toxin	PF06414.12	gi|564288751|ref|YP_008874970.1|	-	0.015	14.5	0.0	0.035	13.4	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
CPT	PF07931.12	gi|564288751|ref|YP_008874970.1|	-	0.016	15.1	0.0	0.035	13.9	0.0	1.7	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
Prot_ATP_OB_N	PF17758.1	gi|564288751|ref|YP_008874970.1|	-	0.016	14.9	0.1	0.054	13.2	0.1	2.0	1	0	0	1	1	1	0	Proteasomal	ATPase	OB	N-terminal	domain
HAP1_N	PF04849.13	gi|564288751|ref|YP_008874970.1|	-	0.017	14.4	3.6	0.033	13.4	3.6	1.4	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
bZIP_1	PF00170.21	gi|564288751|ref|YP_008874970.1|	-	0.017	15.2	3.5	0.41	10.8	0.2	2.6	1	1	1	2	2	2	0	bZIP	transcription	factor
NTPase_1	PF03266.15	gi|564288751|ref|YP_008874970.1|	-	0.019	14.9	0.7	0.41	10.5	0.0	2.8	3	0	0	3	3	3	0	NTPase
AAA_18	PF13238.6	gi|564288751|ref|YP_008874970.1|	-	0.02	15.4	0.1	0.12	12.9	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
Torsin	PF06309.11	gi|564288751|ref|YP_008874970.1|	-	0.021	14.9	0.0	0.043	13.9	0.0	1.4	1	0	0	1	1	1	0	Torsin
TsaE	PF02367.17	gi|564288751|ref|YP_008874970.1|	-	0.021	14.8	0.0	0.039	13.9	0.0	1.4	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NB-ARC	PF00931.22	gi|564288751|ref|YP_008874970.1|	-	0.033	13.4	0.0	0.082	12.1	0.0	1.7	1	0	0	1	1	1	0	NB-ARC	domain
AAA_17	PF13207.6	gi|564288751|ref|YP_008874970.1|	-	0.036	14.5	1.7	0.079	13.4	0.2	2.5	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|564288751|ref|YP_008874970.1|	-	0.043	13.6	0.1	0.14	11.9	0.0	1.8	2	0	0	2	2	1	0	IstB-like	ATP	binding	protein
AAA_7	PF12775.7	gi|564288751|ref|YP_008874970.1|	-	0.066	12.7	0.0	0.16	11.4	0.0	1.6	2	0	0	2	2	1	0	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|564288751|ref|YP_008874970.1|	-	0.1	13.0	0.0	0.23	11.9	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DUF2075	PF09848.9	gi|564288751|ref|YP_008874970.1|	-	0.11	11.8	0.0	0.22	10.7	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
DUF5595	PF18077.1	gi|564288751|ref|YP_008874970.1|	-	0.11	12.6	2.0	0.26	11.4	2.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5595)
Laminin_II	PF06009.12	gi|564288751|ref|YP_008874970.1|	-	0.11	12.5	1.1	0.3	11.1	0.9	1.8	2	0	0	2	2	1	0	Laminin	Domain	II
ABC_tran	PF00005.27	gi|564288751|ref|YP_008874970.1|	-	0.12	12.9	0.1	0.55	10.7	0.0	2.2	2	0	0	2	2	2	0	ABC	transporter
ATPase	PF06745.13	gi|564288751|ref|YP_008874970.1|	-	0.13	11.6	2.9	0.18	11.1	0.4	2.4	2	1	0	2	2	2	0	KaiC
APG6_N	PF17675.1	gi|564288751|ref|YP_008874970.1|	-	0.16	12.5	4.3	0.57	10.7	4.3	1.9	1	0	0	1	1	1	0	Apg6	coiled-coil	region
YabA	PF06156.13	gi|564288751|ref|YP_008874970.1|	-	0.17	12.5	2.5	0.46	11.1	1.9	2.0	2	0	0	2	2	1	0	Initiation	control	protein	YabA
AAA_24	PF13479.6	gi|564288751|ref|YP_008874970.1|	-	0.17	11.6	0.6	0.48	10.1	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
DUF3450	PF11932.8	gi|564288751|ref|YP_008874970.1|	-	0.28	10.5	3.9	0.13	11.6	0.9	1.9	3	0	0	3	3	1	0	Protein	of	unknown	function	(DUF3450)
AAA_13	PF13166.6	gi|564288751|ref|YP_008874970.1|	-	0.3	9.7	1.8	1.7	7.2	0.6	2.4	3	0	0	3	3	3	0	AAA	domain
MEDS	PF14417.6	gi|564288751|ref|YP_008874970.1|	-	0.33	10.8	1.7	3.7	7.3	0.0	2.9	3	1	0	3	3	3	0	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
TSC22	PF01166.18	gi|564288751|ref|YP_008874970.1|	-	0.49	10.7	8.7	0.17	12.2	0.6	3.1	2	1	1	3	3	2	0	TSC-22/dip/bun	family
bZIP_2	PF07716.15	gi|564288751|ref|YP_008874970.1|	-	0.78	9.9	3.5	0.56	10.3	0.5	2.2	1	1	1	2	2	2	0	Basic	region	leucine	zipper
DivIC	PF04977.15	gi|564288751|ref|YP_008874970.1|	-	1.2	9.0	4.5	1.1	9.1	2.7	1.9	2	0	0	2	2	1	0	Septum	formation	initiator
AAA_25	PF13481.6	gi|564288751|ref|YP_008874970.1|	-	2.8	7.5	7.3	2	7.9	0.2	3.1	2	1	0	3	3	3	0	AAA	domain
TolA_bind_tri	PF16331.5	gi|564288751|ref|YP_008874970.1|	-	6.2	7.0	10.9	0.45	10.6	3.8	2.6	3	0	0	3	3	2	0	TolA	binding	protein	trimerisation
ZapB	PF06005.12	gi|564288751|ref|YP_008874970.1|	-	6.5	7.3	11.2	0.99	9.9	5.4	2.5	3	0	0	3	3	2	0	Cell	division	protein	ZapB
PQQ_2	PF13360.6	gi|564288752|ref|YP_008874971.1|	-	4.9e-53	180.2	35.0	8.9e-22	77.8	9.0	3.0	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|564288752|ref|YP_008874971.1|	-	5.9e-52	172.9	39.4	2.1e-11	44.0	0.1	8.2	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.21	gi|564288752|ref|YP_008874971.1|	-	3.2e-38	127.9	15.6	5.1e-09	35.6	0.1	7.7	7	0	0	7	7	7	6	PQQ	enzyme	repeat
SUKH-4	PF14435.6	gi|564288752|ref|YP_008874971.1|	-	0.022	14.8	9.8	1.8	8.6	0.1	4.6	3	1	0	3	3	3	0	SUKH-4	immunity	protein
TruB_C	PF09142.11	gi|564288752|ref|YP_008874971.1|	-	3.4	7.5	7.5	5.3	6.9	0.3	4.1	5	1	0	5	5	5	0	tRNA	Pseudouridine	synthase	II,	C	terminal
PvlArgDC	PF01862.16	gi|564288753|ref|YP_008874972.1|	-	8.6e-33	113.4	0.1	1.1e-32	113.1	0.1	1.0	1	0	0	1	1	1	1	Pyruvoyl-dependent	arginine	decarboxylase	(PvlArgDC)
Gram_pos_anchor	PF00746.21	gi|564288755|ref|YP_008874974.1|	-	4.5	7.3	5.7	4.8	7.2	0.0	2.3	1	1	1	2	2	2	0	LPXTG	cell	wall	anchor	motif
GTP_EFTU	PF00009.27	gi|564288756|ref|YP_008874975.1|	-	4e-30	104.8	0.1	8.5e-29	100.5	0.1	2.4	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.6	gi|564288756|ref|YP_008874975.1|	-	1.6e-25	88.8	0.2	6.7e-25	86.8	0.0	2.2	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
IF-2	PF11987.8	gi|564288756|ref|YP_008874975.1|	-	5.1e-23	81.2	0.3	1.6e-22	79.6	0.3	1.9	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.25	gi|564288756|ref|YP_008874975.1|	-	1.9e-13	50.6	4.4	7.6e-09	35.8	0.1	2.8	2	0	0	2	2	2	2	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|564288756|ref|YP_008874975.1|	-	2e-08	34.3	0.5	7.6e-08	32.4	0.0	2.3	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.23	gi|564288756|ref|YP_008874975.1|	-	0.00053	20.1	0.3	0.11	12.6	0.1	2.7	2	0	0	2	2	2	1	Dynamin	family
ATP_bind_1	PF03029.17	gi|564288756|ref|YP_008874975.1|	-	0.0019	18.0	0.0	0.0063	16.3	0.0	1.9	1	1	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
Roc	PF08477.13	gi|564288756|ref|YP_008874975.1|	-	0.04	14.2	0.0	0.15	12.3	0.0	2.0	2	1	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Copper-bind	PF00127.20	gi|564288757|ref|YP_008874976.1|	-	1.1e-14	54.7	0.0	1.5e-14	54.2	0.0	1.2	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|564288757|ref|YP_008874976.1|	-	0.0083	16.2	0.0	0.032	14.3	0.0	1.8	1	1	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|564288757|ref|YP_008874976.1|	-	0.012	15.4	0.2	0.012	15.4	0.2	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TALPID3	PF15324.6	gi|564288757|ref|YP_008874976.1|	-	4.5	4.8	8.5	4.7	4.8	8.5	1.0	1	0	0	1	1	1	0	Hedgehog	signalling	target
MGC-24	PF05283.11	gi|564288757|ref|YP_008874976.1|	-	7.9	6.9	7.5	12	6.3	7.5	1.3	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24),	sialomucin
PRC	PF05239.16	gi|564288758|ref|YP_008874977.1|	-	2.8e-11	43.3	0.0	3e-11	43.2	0.0	1.0	1	0	0	1	1	1	1	PRC-barrel	domain
PIN_6	PF17146.4	gi|564288759|ref|YP_008874978.1|	-	2.1e-14	53.8	0.1	3.3e-14	53.1	0.1	1.3	1	0	0	1	1	1	1	PIN	domain	of	ribonuclease
HypA	PF01155.19	gi|564288759|ref|YP_008874978.1|	-	0.00039	20.4	0.1	0.00068	19.6	0.1	1.4	1	1	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
PIN_5	PF08745.11	gi|564288759|ref|YP_008874978.1|	-	0.0011	18.4	0.8	0.0042	16.5	0.3	1.8	1	1	1	2	2	2	1	PINc	domain	ribonuclease
Zn-ribbon_8	PF09723.10	gi|564288759|ref|YP_008874978.1|	-	0.0021	18.2	1.9	0.0052	16.9	1.9	1.6	1	0	0	1	1	1	1	Zinc	ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|564288759|ref|YP_008874978.1|	-	0.0041	17.1	2.4	0.15	12.1	0.2	2.6	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF4411	PF14367.6	gi|564288759|ref|YP_008874978.1|	-	0.0049	16.8	0.2	0.23	11.3	0.0	2.2	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4411)
zf-C3HC4_3	PF13920.6	gi|564288759|ref|YP_008874978.1|	-	0.0098	15.7	0.5	0.014	15.2	0.5	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
Rad50_zn_hook	PF04423.14	gi|564288759|ref|YP_008874978.1|	-	0.01	15.7	1.1	0.13	12.2	0.8	2.8	1	1	1	2	2	2	0	Rad50	zinc	hook	motif
Prok-RING_1	PF14446.6	gi|564288759|ref|YP_008874978.1|	-	0.026	14.4	0.3	0.048	13.6	0.3	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DZR	PF12773.7	gi|564288759|ref|YP_008874978.1|	-	0.032	14.3	1.0	0.05	13.6	1.0	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
C1_2	PF03107.16	gi|564288759|ref|YP_008874978.1|	-	0.041	14.2	0.2	0.065	13.6	0.2	1.3	1	0	0	1	1	1	0	C1	domain
NOB1_Zn_bind	PF08772.11	gi|564288759|ref|YP_008874978.1|	-	0.042	14.0	0.4	0.09	12.9	0.4	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C2HC_2	PF13913.6	gi|564288759|ref|YP_008874978.1|	-	0.044	13.7	5.0	0.11	12.4	0.3	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Prok-RING_4	PF14447.6	gi|564288759|ref|YP_008874978.1|	-	0.059	13.2	1.3	0.11	12.3	1.3	1.5	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	4
zinc_ribbon_15	PF17032.5	gi|564288759|ref|YP_008874978.1|	-	0.063	14.0	0.1	0.088	13.6	0.1	1.3	1	0	0	1	1	1	0	zinc-ribbon	family
zinc-ribbons_6	PF07191.12	gi|564288759|ref|YP_008874978.1|	-	0.063	13.3	0.2	0.1	12.6	0.2	1.3	1	0	0	1	1	1	0	zinc-ribbons
zf-C2H2	PF00096.26	gi|564288759|ref|YP_008874978.1|	-	0.17	12.4	2.0	9.3	6.9	0.2	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|564288759|ref|YP_008874978.1|	-	0.39	11.7	1.8	31	5.8	0.2	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
RHH_1	PF01402.21	gi|564288760|ref|YP_008874979.1|	-	0.0057	16.5	0.1	0.0075	16.2	0.1	1.3	1	1	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
IF2_N	PF04760.15	gi|564288760|ref|YP_008874979.1|	-	0.014	15.2	0.0	0.029	14.2	0.0	1.5	1	1	1	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
DUF3782	PF12644.7	gi|564288760|ref|YP_008874979.1|	-	0.014	15.5	0.0	0.014	15.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3782)
DprA_WH	PF17782.1	gi|564288760|ref|YP_008874979.1|	-	0.018	15.2	0.4	0.02	15.0	0.4	1.1	1	0	0	1	1	1	0	DprA	winged	helix	domain
DUF3791	PF12668.7	gi|564288760|ref|YP_008874979.1|	-	0.064	13.3	0.0	0.072	13.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
ANT	PF03374.14	gi|564288760|ref|YP_008874979.1|	-	0.15	12.4	0.0	0.16	12.3	0.0	1.0	1	0	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
CPBP	PF02517.16	gi|564288761|ref|YP_008874980.1|	-	3.8e-14	52.8	2.2	3.8e-14	52.8	2.2	3.6	2	1	0	2	2	2	1	CPBP	intramembrane	metalloprotease
PGI	PF00342.19	gi|564288762|ref|YP_008874981.1|	-	4.6e-26	91.5	0.0	7.8e-22	77.5	0.0	2.1	2	0	0	2	2	2	2	Phosphoglucose	isomerase
YrhC	PF14143.6	gi|564288763|ref|YP_008874982.1|	-	4.5	7.4	10.3	2.1	8.5	0.3	3.2	3	0	0	3	3	3	0	YrhC-like	protein
TatD_DNase	PF01026.21	gi|564288764|ref|YP_008874983.1|	-	0.078	12.3	0.3	0.11	11.9	0.3	1.2	1	0	0	1	1	1	0	TatD	related	DNase
SecD_SecF	PF02355.16	gi|564288766|ref|YP_008874985.1|	-	1.1e-24	86.8	11.7	1.8e-24	86.2	11.7	1.3	1	0	0	1	1	1	1	Protein	export	membrane	protein
Sec_GG	PF07549.14	gi|564288766|ref|YP_008874985.1|	-	8.8e-05	21.9	0.4	0.00033	20.0	0.1	2.2	2	0	0	2	2	2	1	SecD/SecF	GG	Motif
DUF4309	PF14172.6	gi|564288766|ref|YP_008874985.1|	-	0.12	12.4	0.0	0.19	11.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4309)
Patched	PF02460.18	gi|564288766|ref|YP_008874985.1|	-	0.14	10.2	12.9	0.19	9.7	12.9	1.1	1	0	0	1	1	1	0	Patched	family
SecD_SecF	PF02355.16	gi|564288767|ref|YP_008874986.1|	-	4.2e-16	58.9	3.6	8.9e-16	57.8	3.6	1.5	1	0	0	1	1	1	1	Protein	export	membrane	protein
MMPL	PF03176.15	gi|564288767|ref|YP_008874986.1|	-	0.017	14.1	12.7	0.038	12.9	12.7	1.5	1	0	0	1	1	1	0	MMPL	family
TNFR_16_TM	PF18422.1	gi|564288767|ref|YP_008874986.1|	-	0.79	9.7	4.1	2	8.4	0.5	2.4	2	0	0	2	2	2	0	Tumor	necrosis	factor	receptor	member	16	trans-membrane	domain
RNase_HII	PF01351.18	gi|564288768|ref|YP_008874987.1|	-	9.9e-37	126.7	0.0	1.1e-36	126.5	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
THUMP	PF02926.17	gi|564288769|ref|YP_008874988.1|	-	7.9e-06	26.0	0.0	1.5e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	THUMP	domain
DnaJ_CXXCXGXG	PF00684.19	gi|564288769|ref|YP_008874988.1|	-	0.0025	18.1	1.7	0.0046	17.3	0.5	2.0	2	0	0	2	2	2	1	DnaJ	central	domain
MS_channel	PF00924.18	gi|564288770|ref|YP_008874989.1|	-	1.1e-46	159.0	0.0	2.5e-46	157.8	0.0	1.6	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
BacA	PF02673.18	gi|564288771|ref|YP_008874990.1|	-	2.4e-47	161.8	11.7	2.8e-47	161.6	11.7	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
DUF4382	PF14321.6	gi|564288772|ref|YP_008874991.1|	-	5e-24	85.1	1.5	6.1e-24	84.8	1.5	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4382)
TAT_signal	PF10518.9	gi|564288772|ref|YP_008874991.1|	-	0.00031	20.5	3.4	0.00059	19.6	3.4	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|564288772|ref|YP_008874991.1|	-	0.03	13.7	0.2	0.053	12.9	0.2	1.3	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
CheF-arch	PF04283.12	gi|564288773|ref|YP_008874992.1|	-	5.8e-58	196.2	0.1	1.8e-57	194.6	0.0	1.7	2	0	0	2	2	2	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
Usp	PF00582.26	gi|564288776|ref|YP_008874995.1|	-	1.1e-40	139.4	1.6	1.3e-40	139.2	1.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.21	gi|564288776|ref|YP_008874995.1|	-	0.0086	16.0	0.2	1.3	8.8	0.0	2.2	1	1	1	2	2	2	2	Electron	transfer	flavoprotein	domain
baeRF_family10	PF18854.1	gi|564288776|ref|YP_008874995.1|	-	0.034	14.4	1.0	0.044	14.0	0.8	1.4	1	1	0	1	1	1	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
DUF3226	PF11536.8	gi|564288776|ref|YP_008874995.1|	-	0.099	12.3	0.2	1.5	8.4	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3226)
SSF	PF00474.17	gi|564288777|ref|YP_008874996.1|	-	7.6e-51	173.2	34.4	1e-50	172.8	34.4	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF4212	PF13937.6	gi|564288778|ref|YP_008874997.1|	-	2.8e-23	82.1	0.2	3.5e-23	81.8	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4212)
AMP-binding	PF00501.28	gi|564288779|ref|YP_008874998.1|	-	1.6e-88	297.2	0.0	1.9e-88	296.9	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564288779|ref|YP_008874998.1|	-	5.3e-23	81.8	0.4	1.1e-22	80.8	0.4	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|564288779|ref|YP_008874998.1|	-	3.4e-14	52.5	2.3	3.4e-14	52.5	2.3	2.2	2	0	0	2	2	2	1	Acetyl-coenzyme	A	synthetase	N-terminus
BAT	PF15915.5	gi|564288780|ref|YP_008874999.1|	-	5.6e-43	146.5	10.6	5.6e-43	146.5	10.6	2.9	3	1	1	4	4	4	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|564288780|ref|YP_008874999.1|	-	1.2e-21	76.2	0.0	6e-21	74.0	0.0	2.3	2	0	0	2	2	2	1	HTH	DNA	binding	domain
GAF_2	PF13185.6	gi|564288780|ref|YP_008874999.1|	-	7e-07	29.6	2.0	0.00015	22.1	1.6	3.1	1	1	0	1	1	1	1	GAF	domain
Phage_integrase	PF00589.22	gi|564288780|ref|YP_008874999.1|	-	1.5e-06	28.2	0.0	3.1e-06	27.1	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
GAF_3	PF13492.6	gi|564288780|ref|YP_008874999.1|	-	4.9e-05	23.7	0.1	0.00021	21.6	0.1	2.2	1	0	0	1	1	1	1	GAF	domain
Sigma70_r4	PF04545.16	gi|564288780|ref|YP_008874999.1|	-	0.00038	19.9	0.0	0.0043	16.5	0.0	2.6	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_20	PF12840.7	gi|564288780|ref|YP_008874999.1|	-	0.00084	19.4	0.4	0.012	15.6	0.0	2.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|564288780|ref|YP_008874999.1|	-	0.0051	16.3	0.0	0.03	13.9	0.0	2.3	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_11	PF08279.12	gi|564288780|ref|YP_008874999.1|	-	0.015	15.2	0.1	0.084	12.8	0.0	2.1	2	0	0	2	2	2	0	HTH	domain
Sigma70_r4_2	PF08281.12	gi|564288780|ref|YP_008874999.1|	-	0.021	14.5	0.1	0.28	10.9	0.0	2.5	2	0	0	2	2	2	0	Sigma-70,	region	4
MarR_2	PF12802.7	gi|564288780|ref|YP_008874999.1|	-	0.053	13.4	0.1	0.63	10.0	0.0	2.7	2	0	0	2	2	2	0	MarR	family
HTH_24	PF13412.6	gi|564288780|ref|YP_008874999.1|	-	0.063	12.8	0.0	0.15	11.6	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564288780|ref|YP_008874999.1|	-	0.071	13.0	0.3	0.27	11.1	0.2	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_22	PF13309.6	gi|564288780|ref|YP_008874999.1|	-	0.095	12.8	0.0	0.26	11.4	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
AMP-binding	PF00501.28	gi|564288781|ref|YP_008875000.1|	-	1.4e-82	277.6	0.2	3.3e-82	276.4	0.2	1.6	1	1	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564288781|ref|YP_008875000.1|	-	4.7e-20	72.3	0.4	1e-19	71.3	0.4	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|564288781|ref|YP_008875000.1|	-	1e-13	51.0	0.3	2.5e-13	49.7	0.3	1.7	1	0	0	1	1	1	1	Acetyl-coenzyme	A	synthetase	N-terminus
CheF-arch	PF04283.12	gi|564288782|ref|YP_008875001.1|	-	6.7e-64	215.6	2.0	6.7e-64	215.6	2.0	1.4	2	0	0	2	2	2	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
PrpF	PF04303.13	gi|564288782|ref|YP_008875001.1|	-	0.045	12.7	0.1	0.06	12.3	0.1	1.2	1	0	0	1	1	1	0	PrpF	protein
NTP_transferase	PF00483.23	gi|564288783|ref|YP_008875002.1|	-	2.8e-36	125.4	0.0	3.4e-36	125.1	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564288783|ref|YP_008875002.1|	-	8.1e-15	55.5	0.1	1.5e-14	54.7	0.1	1.4	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|564288783|ref|YP_008875002.1|	-	1.1e-12	47.1	9.5	1.7e-10	40.2	1.4	4.1	4	0	0	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564288783|ref|YP_008875002.1|	-	2.2e-08	33.7	6.6	2.5e-06	27.1	1.3	3.6	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.19	gi|564288783|ref|YP_008875002.1|	-	1.4e-05	25.0	0.2	2.8e-05	24.0	0.2	1.6	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
SIS	PF01380.22	gi|564288784|ref|YP_008875003.1|	-	4.5e-55	185.0	1.0	1.1e-27	96.4	0.0	2.2	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.6	gi|564288784|ref|YP_008875003.1|	-	2.8e-22	79.4	0.1	7.5e-22	78.0	0.1	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.6	gi|564288784|ref|YP_008875003.1|	-	1.2e-19	70.4	0.0	2.3e-19	69.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.6	gi|564288784|ref|YP_008875003.1|	-	0.024	14.7	0.1	0.21	11.6	0.0	2.5	2	0	0	2	2	2	0	SIS	domain
GATase_4	PF13230.6	gi|564288784|ref|YP_008875003.1|	-	0.057	12.3	0.0	0.095	11.6	0.0	1.3	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
CNP_C_terminal	PF17839.1	gi|564288784|ref|YP_008875003.1|	-	0.075	13.8	0.0	0.14	12.9	0.0	1.3	1	0	0	1	1	1	0	C-terminal	domain	of	cyclic	nucleotide	phosphodiesterase
Bac_transf	PF02397.16	gi|564288785|ref|YP_008875004.1|	-	6e-57	192.2	0.0	1.1e-56	191.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	sugar	transferase
DUF1970	PF09301.10	gi|564288785|ref|YP_008875004.1|	-	2.1e-11	44.1	0.1	5.4e-11	42.7	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1970)
GPI2	PF06432.11	gi|564288785|ref|YP_008875004.1|	-	0.22	10.9	0.8	0.47	9.8	0.8	1.4	1	0	0	1	1	1	0	Phosphatidylinositol	N-acetylglucosaminyltransferase
NTP_transferase	PF00483.23	gi|564288786|ref|YP_008875005.1|	-	1.8e-42	145.6	0.0	2.2e-42	145.4	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564288786|ref|YP_008875005.1|	-	5.9e-15	56.0	0.0	7e-15	55.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|564288786|ref|YP_008875005.1|	-	1.3e-05	25.1	0.0	6.1e-05	22.9	0.0	2.0	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
UDPG_MGDP_dh_N	PF03721.14	gi|564288787|ref|YP_008875006.1|	-	5.9e-53	179.2	0.0	1.8e-52	177.6	0.0	1.8	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|564288787|ref|YP_008875006.1|	-	4.1e-36	123.1	0.0	7.6e-36	122.2	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564288787|ref|YP_008875006.1|	-	3.5e-28	98.1	0.7	1.3e-27	96.3	0.1	2.3	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
3HCDH_N	PF02737.18	gi|564288787|ref|YP_008875006.1|	-	3e-05	24.0	0.0	6.5e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288787|ref|YP_008875006.1|	-	0.00016	21.0	0.7	0.0043	16.3	0.4	2.3	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.23	gi|564288787|ref|YP_008875006.1|	-	0.00022	21.2	0.0	0.00053	20.0	0.0	1.7	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.18	gi|564288787|ref|YP_008875006.1|	-	0.0012	19.1	4.3	0.0092	16.2	0.1	3.4	4	0	0	4	4	4	1	TrkA-N	domain
ApbA	PF02558.16	gi|564288787|ref|YP_008875006.1|	-	0.0013	18.4	0.0	0.0032	17.1	0.0	1.7	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|564288787|ref|YP_008875006.1|	-	0.0019	18.8	0.4	0.0088	16.6	0.3	2.3	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|564288787|ref|YP_008875006.1|	-	0.0034	17.6	0.1	0.012	15.8	0.1	2.1	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
2-Hacid_dh_C	PF02826.19	gi|564288787|ref|YP_008875006.1|	-	0.0072	15.7	0.0	0.13	11.6	0.0	2.4	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Rossmann-like	PF10727.9	gi|564288787|ref|YP_008875006.1|	-	0.0089	15.9	0.2	0.11	12.4	0.1	2.5	2	0	0	2	2	2	1	Rossmann-like	domain
XdhC_C	PF13478.6	gi|564288787|ref|YP_008875006.1|	-	0.031	14.8	0.2	1.1	9.8	0.0	3.0	3	0	0	3	3	3	0	XdhC	Rossmann	domain
AlaDh_PNT_C	PF01262.21	gi|564288787|ref|YP_008875006.1|	-	0.036	13.4	0.1	0.068	12.5	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF2795	PF11387.8	gi|564288787|ref|YP_008875006.1|	-	0.052	13.8	0.0	0.16	12.2	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2795)
FAD_binding_3	PF01494.19	gi|564288787|ref|YP_008875006.1|	-	0.068	12.4	0.1	0.095	11.9	0.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
ThiF	PF00899.21	gi|564288787|ref|YP_008875006.1|	-	0.096	12.0	0.1	0.16	11.3	0.1	1.3	1	0	0	1	1	1	0	ThiF	family
NAD_binding_11	PF14833.6	gi|564288787|ref|YP_008875006.1|	-	0.12	12.6	1.1	3.7	7.8	0.1	3.0	3	0	0	3	3	3	0	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|564288787|ref|YP_008875006.1|	-	0.73	9.9	4.0	16	5.6	0.0	3.1	3	0	0	3	3	3	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
DUF43	PF01861.16	gi|564288787|ref|YP_008875006.1|	-	0.98	8.6	2.9	0.81	8.9	0.1	2.2	3	0	0	3	3	3	0	Branched-chain	polyamine	synthase	A	C-terminal	domain
DAO	PF01266.24	gi|564288787|ref|YP_008875006.1|	-	2.6	7.5	5.8	7.5	6.0	5.2	2.4	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
YdjM	PF04307.14	gi|564288788|ref|YP_008875007.1|	-	2.4e-06	27.0	7.4	1.8e-05	24.1	7.4	1.9	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4131	PF13567.6	gi|564288789|ref|YP_008875008.1|	-	9.7e-05	22.1	0.9	0.01	15.5	0.1	2.6	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF4131)
Rep_fac-A_3	PF08661.11	gi|564288789|ref|YP_008875008.1|	-	0.0028	18.0	0.0	0.0036	17.6	0.0	1.1	1	0	0	1	1	1	1	Replication	factor	A	protein	3
tRNA_anti-codon	PF01336.25	gi|564288789|ref|YP_008875008.1|	-	0.026	14.5	0.3	2.6	8.1	0.1	2.3	1	1	1	2	2	2	0	OB-fold	nucleic	acid	binding	domain
CcmE	PF03100.15	gi|564288789|ref|YP_008875008.1|	-	0.1	12.6	0.1	0.33	11.0	0.1	1.7	1	1	0	1	1	1	0	CcmE
AglB_L1	PF18079.1	gi|564288790|ref|YP_008875009.1|	-	2.7e-07	30.8	6.3	1.2e-05	25.5	6.3	2.6	1	1	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
STT3	PF02516.14	gi|564288790|ref|YP_008875009.1|	-	8.4e-07	28.3	13.3	1.3e-06	27.6	13.3	1.4	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
CarboxypepD_reg	PF13620.6	gi|564288790|ref|YP_008875009.1|	-	0.0031	17.7	8.3	0.0088	16.3	8.3	1.8	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
DUF4198	PF10670.9	gi|564288790|ref|YP_008875009.1|	-	0.0071	16.7	0.1	0.016	15.6	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4198)
fn3_3	PF14686.6	gi|564288790|ref|YP_008875009.1|	-	0.008	15.9	0.4	0.021	14.6	0.4	1.7	1	0	0	1	1	1	1	Polysaccharide	lyase	family	4,	domain	II
Big_6	PF17936.1	gi|564288790|ref|YP_008875009.1|	-	0.015	15.6	2.7	0.054	13.8	2.7	2.0	1	0	0	1	1	1	0	Bacterial	Ig	domain
CarbopepD_reg_2	PF13715.6	gi|564288790|ref|YP_008875009.1|	-	0.11	12.5	1.3	0.21	11.6	0.7	1.7	2	0	0	2	2	2	0	CarboxypepD_reg-like	domain
Dioxygenase_C	PF00775.21	gi|564288790|ref|YP_008875009.1|	-	0.14	11.6	0.1	0.33	10.4	0.1	1.5	1	0	0	1	1	1	0	Dioxygenase
Epimerase	PF01370.21	gi|564288791|ref|YP_008875010.1|	-	5.6e-41	140.6	0.0	6.9e-41	140.3	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564288791|ref|YP_008875010.1|	-	2e-24	86.6	0.0	2.4e-24	86.4	0.0	1.1	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|564288791|ref|YP_008875010.1|	-	5.6e-24	84.7	0.1	7.1e-24	84.4	0.1	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|564288791|ref|YP_008875010.1|	-	1.7e-22	79.7	0.0	2.4e-22	79.2	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|564288791|ref|YP_008875010.1|	-	8.4e-14	51.4	0.0	6.9e-13	48.4	0.0	2.3	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|564288791|ref|YP_008875010.1|	-	2.7e-09	36.6	0.0	1.1e-06	28.0	0.0	2.5	2	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.6	gi|564288791|ref|YP_008875010.1|	-	5.3e-06	26.4	0.0	2.5e-05	24.3	0.0	2.0	2	0	0	2	2	2	1	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|564288791|ref|YP_008875010.1|	-	0.00012	22.3	0.0	0.00031	21.0	0.0	1.8	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
DapB_N	PF01113.20	gi|564288791|ref|YP_008875010.1|	-	0.0074	16.4	0.1	0.015	15.4	0.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NmrA	PF05368.13	gi|564288791|ref|YP_008875010.1|	-	0.0083	15.7	0.1	0.071	12.7	0.1	2.2	2	0	0	2	2	2	1	NmrA-like	family
Semialdhyde_dh	PF01118.24	gi|564288791|ref|YP_008875010.1|	-	0.03	14.8	0.0	0.11	12.9	0.0	1.9	2	0	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Ldh_1_N	PF00056.23	gi|564288791|ref|YP_008875010.1|	-	0.034	14.2	0.2	0.064	13.4	0.0	1.5	2	0	0	2	2	2	0	lactate/malate	dehydrogenase,	NAD	binding	domain
DUF3821	PF12863.7	gi|564288791|ref|YP_008875010.1|	-	0.15	11.9	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3821)
Epimerase	PF01370.21	gi|564288792|ref|YP_008875011.1|	-	5.9e-47	160.1	0.0	7e-47	159.9	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564288792|ref|YP_008875011.1|	-	1.3e-31	110.2	0.0	1.7e-31	109.8	0.0	1.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|564288792|ref|YP_008875011.1|	-	5.9e-25	87.8	0.0	1.6e-24	86.4	0.0	1.5	1	1	1	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|564288792|ref|YP_008875011.1|	-	9.7e-14	51.1	0.0	1.2e-13	50.8	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.15	gi|564288792|ref|YP_008875011.1|	-	9.8e-13	47.9	0.0	2.8e-12	46.4	0.0	1.7	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|564288792|ref|YP_008875011.1|	-	7.2e-11	42.3	0.0	1.1e-10	41.7	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|564288792|ref|YP_008875011.1|	-	4e-09	36.0	0.0	1.4e-06	27.7	0.1	2.5	2	1	0	2	2	2	2	Male	sterility	protein
Sacchrp_dh_NADP	PF03435.18	gi|564288792|ref|YP_008875011.1|	-	0.00018	21.8	0.0	0.0004	20.7	0.0	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Ldh_1_N	PF00056.23	gi|564288792|ref|YP_008875011.1|	-	0.00082	19.5	0.0	0.0012	18.9	0.0	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.13	gi|564288792|ref|YP_008875011.1|	-	0.0012	18.4	0.0	0.047	13.2	0.0	2.2	2	0	0	2	2	2	1	NmrA-like	family
KR	PF08659.10	gi|564288792|ref|YP_008875011.1|	-	0.028	14.4	0.1	0.11	12.4	0.1	1.9	1	1	0	1	1	1	0	KR	domain
Semialdhyde_dh	PF01118.24	gi|564288792|ref|YP_008875011.1|	-	0.075	13.5	0.0	0.15	12.5	0.0	1.6	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.21	gi|564288793|ref|YP_008875012.1|	-	4.7e-20	72.1	0.0	1.1e-19	70.8	0.0	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564288793|ref|YP_008875012.1|	-	6.7e-14	52.0	0.1	3.1e-13	49.8	0.1	2.0	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|564288793|ref|YP_008875012.1|	-	0.00025	20.3	0.0	0.0085	15.3	0.0	2.4	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|564288793|ref|YP_008875012.1|	-	0.0088	15.2	0.0	0.11	11.5	0.1	2.7	3	1	0	3	3	3	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|564288793|ref|YP_008875012.1|	-	0.064	12.2	0.0	0.14	11.1	0.0	1.8	1	1	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NUDIX	PF00293.28	gi|564288794|ref|YP_008875013.1|	-	7.9e-10	38.9	0.1	9.2e-10	38.7	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
Methyltrn_RNA_2	PF04013.12	gi|564288796|ref|YP_008875015.1|	-	1.7e-62	210.6	0.0	2e-62	210.5	0.0	1.0	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
NPP1	PF05630.11	gi|564288797|ref|YP_008875016.1|	-	0.17	12.0	0.0	0.3	11.2	0.0	1.5	1	0	0	1	1	1	0	Necrosis	inducing	protein	(NPP1)
GCIP	PF13324.6	gi|564288797|ref|YP_008875016.1|	-	0.46	10.1	2.0	0.95	9.0	2.0	1.5	1	0	0	1	1	1	0	Grap2	and	cyclin-D-interacting
PGPGW	PF09656.10	gi|564291289|ref|YP_008875017.1|	-	1.1	8.9	11.1	5.8	6.5	11.0	1.9	1	1	0	1	1	1	0	Putative	transmembrane	protein	(PGPGW)
NUDIX	PF00293.28	gi|564288798|ref|YP_008875018.1|	-	2e-13	50.5	0.0	2.6e-13	50.1	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
AAA_30	PF13604.6	gi|564288798|ref|YP_008875018.1|	-	0.075	12.8	0.0	0.13	11.9	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
DUF3924	PF13062.6	gi|564288799|ref|YP_008875019.1|	-	0.00059	19.7	0.0	0.00082	19.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3924)
RHH_1	PF01402.21	gi|564288799|ref|YP_008875019.1|	-	0.015	15.2	2.9	0.26	11.3	2.9	2.2	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Trans_reg_C	PF00486.28	gi|564288799|ref|YP_008875019.1|	-	0.096	12.8	0.0	0.14	12.2	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulatory	protein,	C	terminal
TGT	PF01702.18	gi|564288800|ref|YP_008875020.1|	-	5.8e-77	259.2	0.0	7.3e-77	258.9	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
TGT_C1	PF14809.6	gi|564288800|ref|YP_008875020.1|	-	0.015	15.6	0.1	0.21	11.9	0.0	2.2	2	0	0	2	2	2	0	C1	domain	of	tRNA-guanine	transglycosylase	dimerisation
Epimerase	PF01370.21	gi|564288801|ref|YP_008875021.1|	-	5.3e-20	71.9	0.1	3.1e-19	69.4	0.1	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564288801|ref|YP_008875021.1|	-	2.4e-13	50.2	0.0	1.7e-10	40.8	0.0	2.7	1	1	0	2	2	2	2	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|564288801|ref|YP_008875021.1|	-	7.7e-10	38.3	0.0	1.4e-09	37.5	0.0	1.4	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|564288801|ref|YP_008875021.1|	-	8.4e-05	21.9	0.0	0.00014	21.2	0.0	1.3	1	0	0	1	1	1	1	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|564288801|ref|YP_008875021.1|	-	0.00034	19.8	0.0	0.094	11.8	0.0	2.9	3	0	0	3	3	3	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|564288801|ref|YP_008875021.1|	-	0.038	13.9	0.0	0.057	13.3	0.0	1.4	1	0	0	1	1	1	0	NAD(P)H-binding
3Beta_HSD	PF01073.19	gi|564288801|ref|YP_008875021.1|	-	0.049	12.6	0.0	0.06	12.3	0.0	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Alginate_lyase	PF05426.12	gi|564288802|ref|YP_008875022.1|	-	1.1e-51	176.0	2.9	1.6e-51	175.5	2.9	1.2	1	0	0	1	1	1	1	Alginate	lyase
TAT_signal	PF10518.9	gi|564288802|ref|YP_008875022.1|	-	0.22	11.4	1.1	0.45	10.4	1.1	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5591	PF17884.1	gi|564288803|ref|YP_008875023.1|	-	2.9e-60	202.6	0.0	4.2e-60	202.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5591)
TGT_C2	PF14810.6	gi|564288803|ref|YP_008875023.1|	-	4.4e-24	84.4	0.1	2.5e-23	82.0	0.1	2.2	2	0	0	2	2	2	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
TGT	PF01702.18	gi|564288803|ref|YP_008875023.1|	-	4.9e-15	55.5	0.0	3.9e-14	52.6	0.0	2.2	2	1	0	2	2	2	1	Queuine	tRNA-ribosyltransferase
PUA	PF01472.20	gi|564288803|ref|YP_008875023.1|	-	5.6e-12	45.4	0.1	4e-11	42.7	0.0	2.3	2	0	0	2	2	2	1	PUA	domain
VanZ	PF04892.12	gi|564288804|ref|YP_008875024.1|	-	3.1e-06	27.9	0.2	3.6e-06	27.6	0.2	1.1	1	0	0	1	1	1	1	VanZ	like	family
Rhomboid	PF01694.22	gi|564288804|ref|YP_008875024.1|	-	0.02	14.9	2.5	0.033	14.2	2.5	1.3	1	0	0	1	1	1	0	Rhomboid	family
DUF2279	PF10043.9	gi|564288804|ref|YP_008875024.1|	-	0.11	13.2	0.0	0.17	12.7	0.0	1.3	1	0	0	1	1	1	0	Predicted	periplasmic	lipoprotein	(DUF2279)
Radical_SAM	PF04055.21	gi|564288805|ref|YP_008875025.1|	-	0.0078	16.6	0.0	0.014	15.8	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF678	PF05077.12	gi|564291290|ref|YP_008875026.1|	-	0.028	14.6	3.6	0.071	13.3	3.6	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF678)
DUF2318	PF10080.9	gi|564291290|ref|YP_008875026.1|	-	0.032	14.4	0.8	0.034	14.2	0.8	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
Zn-ribbon_8	PF09723.10	gi|564291290|ref|YP_008875026.1|	-	0.39	10.9	3.9	0.57	10.3	3.9	1.2	1	0	0	1	1	1	0	Zinc	ribbon	domain
TOBE	PF03459.17	gi|564288806|ref|YP_008875027.1|	-	2.8e-13	49.9	0.7	2.8e-13	49.9	0.7	4.0	3	1	0	3	3	3	1	TOBE	domain
HTH_1	PF00126.27	gi|564288806|ref|YP_008875027.1|	-	5.1e-10	39.2	0.2	1.1e-09	38.1	0.2	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_28	PF13518.6	gi|564288806|ref|YP_008875027.1|	-	0.056	13.6	0.1	0.13	12.4	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1932	PF09130.11	gi|564288806|ref|YP_008875027.1|	-	0.11	12.5	0.1	0.36	10.8	0.0	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1932)
TOBE_2	PF08402.10	gi|564288806|ref|YP_008875027.1|	-	0.39	10.9	6.2	0.26	11.5	0.2	3.0	2	1	1	3	3	3	0	TOBE	domain
PBP_like_2	PF12849.7	gi|564288807|ref|YP_008875028.1|	-	5.4e-31	108.3	2.5	7.1e-31	107.9	2.5	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_11	PF13531.6	gi|564288807|ref|YP_008875028.1|	-	9.1e-10	38.7	0.0	1.4e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564288807|ref|YP_008875028.1|	-	0.088	12.7	3.3	0.19	11.7	1.9	2.2	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|564288808|ref|YP_008875029.1|	-	1e-10	41.7	9.5	1e-10	41.7	9.5	1.4	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|564288809|ref|YP_008875030.1|	-	1e-32	113.5	0.0	1.4e-32	113.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288809|ref|YP_008875030.1|	-	8.6e-11	42.2	0.0	2.1e-05	24.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|564288809|ref|YP_008875030.1|	-	3.2e-06	27.6	0.2	1.5e-05	25.4	0.2	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564288809|ref|YP_008875030.1|	-	2.6e-05	24.0	0.2	0.0024	17.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|564288809|ref|YP_008875030.1|	-	0.0001	21.8	0.0	0.0054	16.2	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564288809|ref|YP_008875030.1|	-	0.00051	20.3	0.1	0.0013	19.0	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.14	gi|564288809|ref|YP_008875030.1|	-	0.0021	18.0	0.1	0.27	11.1	0.0	2.2	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.6	gi|564288809|ref|YP_008875030.1|	-	0.0052	17.0	0.4	0.0076	16.4	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|564288809|ref|YP_008875030.1|	-	0.0058	16.4	0.0	0.014	15.1	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
cobW	PF02492.19	gi|564288809|ref|YP_008875030.1|	-	0.007	16.0	0.0	0.069	12.7	0.0	2.2	2	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_28	PF13521.6	gi|564288809|ref|YP_008875030.1|	-	0.0095	16.2	0.0	0.019	15.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564288809|ref|YP_008875030.1|	-	0.01	16.2	0.0	0.053	13.9	0.0	2.1	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.6	gi|564288809|ref|YP_008875030.1|	-	0.016	15.7	0.0	0.048	14.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288809|ref|YP_008875030.1|	-	0.02	14.8	0.1	0.044	13.7	0.0	1.5	2	0	0	2	2	1	0	RsgA	GTPase
AAA_25	PF13481.6	gi|564288809|ref|YP_008875030.1|	-	0.024	14.2	1.4	0.062	12.9	1.4	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|564288809|ref|YP_008875030.1|	-	0.029	14.7	0.5	0.13	12.6	0.5	2.0	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|564288809|ref|YP_008875030.1|	-	0.049	13.5	0.0	0.099	12.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
ATPase_2	PF01637.18	gi|564288809|ref|YP_008875030.1|	-	0.058	13.3	0.0	0.23	11.4	0.0	1.8	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|564288809|ref|YP_008875030.1|	-	0.058	13.1	0.0	0.087	12.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.14	gi|564288809|ref|YP_008875030.1|	-	0.064	13.3	0.1	0.21	11.6	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
TrwB_AAD_bind	PF10412.9	gi|564288809|ref|YP_008875030.1|	-	0.064	12.2	0.0	6.3	5.6	0.0	2.1	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
PhoH	PF02562.16	gi|564288809|ref|YP_008875030.1|	-	0.092	12.2	0.1	0.29	10.6	0.0	1.7	2	0	0	2	2	2	0	PhoH-like	protein
SRP54	PF00448.22	gi|564288809|ref|YP_008875030.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
NB-ARC	PF00931.22	gi|564288809|ref|YP_008875030.1|	-	0.12	11.5	0.0	0.23	10.6	0.0	1.5	2	0	0	2	2	2	0	NB-ARC	domain
Zeta_toxin	PF06414.12	gi|564288809|ref|YP_008875030.1|	-	0.13	11.5	0.0	0.43	9.8	0.0	1.7	2	0	0	2	2	2	0	Zeta	toxin
PIF1	PF05970.14	gi|564288809|ref|YP_008875030.1|	-	0.14	11.3	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
SbcCD_C	PF13558.6	gi|564288809|ref|YP_008875030.1|	-	0.14	12.4	0.1	2.9	8.2	0.1	2.4	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_14	PF13173.6	gi|564288809|ref|YP_008875030.1|	-	0.21	11.6	0.0	0.34	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|564288809|ref|YP_008875030.1|	-	0.21	11.1	0.0	0.33	10.4	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_23	PF13476.6	gi|564288809|ref|YP_008875030.1|	-	0.22	12.0	0.0	0.35	11.3	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564288809|ref|YP_008875030.1|	-	0.29	10.8	0.0	0.41	10.3	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
GATase_5	PF13507.6	gi|564288810|ref|YP_008875031.1|	-	3.5e-45	154.1	0.0	4.3e-45	153.8	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.28	gi|564288810|ref|YP_008875031.1|	-	7.9e-08	32.3	0.0	9.2e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|564288810|ref|YP_008875031.1|	-	2.8e-07	30.3	0.0	4.5e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|564288810|ref|YP_008875031.1|	-	5.6e-06	26.3	0.0	7.4e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
Peptidase_C26	PF07722.13	gi|564288810|ref|YP_008875031.1|	-	0.021	14.6	0.1	0.053	13.3	0.1	1.6	1	1	0	1	1	1	0	Peptidase	C26
SNO	PF01174.19	gi|564288810|ref|YP_008875031.1|	-	0.079	12.8	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	SNO	glutamine	amidotransferase	family
LPD23	PF18838.1	gi|564288810|ref|YP_008875031.1|	-	0.091	12.5	0.0	1.9	8.3	0.0	2.4	2	0	0	2	2	2	0	Large	polyvalent	protein	associated	domain	23
PurS	PF02700.14	gi|564288811|ref|YP_008875032.1|	-	1.5e-26	92.4	0.0	1.7e-26	92.2	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
CHAD	PF05235.14	gi|564288811|ref|YP_008875032.1|	-	0.012	15.6	0.9	0.015	15.3	0.9	1.0	1	0	0	1	1	1	0	CHAD	domain
ATP-synt_DE	PF00401.20	gi|564288811|ref|YP_008875032.1|	-	0.11	12.8	5.7	0.27	11.6	5.7	1.7	1	1	0	1	1	1	0	ATP	synthase,	Delta/Epsilon	chain,	long	alpha-helix	domain
GAF	PF01590.26	gi|564291291|ref|YP_008875033.1|	-	8.8e-08	32.9	0.0	1.2e-07	32.4	0.0	1.1	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|564291291|ref|YP_008875033.1|	-	0.0026	18.1	0.0	0.0033	17.7	0.0	1.2	1	0	0	1	1	1	1	GAF	domain
Formyl_trans_N	PF00551.19	gi|564288812|ref|YP_008875034.1|	-	4e-42	144.0	0.0	8.2e-42	143.0	0.0	1.5	2	0	0	2	2	2	1	Formyl	transferase
ACT_6	PF13740.6	gi|564288812|ref|YP_008875034.1|	-	3.9e-11	42.8	0.4	1e-10	41.4	0.4	1.7	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.25	gi|564288812|ref|YP_008875034.1|	-	1.1e-05	25.1	2.5	1.2e-05	25.0	0.2	2.3	3	0	0	3	3	3	1	ACT	domain
ACT_4	PF13291.6	gi|564288812|ref|YP_008875034.1|	-	0.00024	21.6	0.3	0.00073	20.1	0.2	1.8	2	0	0	2	2	2	1	ACT	domain
SAICAR_synt	PF01259.18	gi|564288813|ref|YP_008875035.1|	-	1.2e-24	87.3	0.0	3.7e-24	85.7	0.0	1.6	1	1	0	1	1	1	1	SAICAR	synthetase
DUF4110	PF13422.6	gi|564288813|ref|YP_008875035.1|	-	0.046	13.8	0.1	0.11	12.6	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4110)
Na_Ca_ex	PF01699.24	gi|564288814|ref|YP_008875036.1|	-	3.3e-43	147.3	31.0	1.9e-22	79.9	9.0	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Radical_SAM	PF04055.21	gi|564288815|ref|YP_008875037.1|	-	3.7e-14	53.5	0.1	7.6e-14	52.4	0.1	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Radical_SAM	PF04055.21	gi|564288816|ref|YP_008875038.1|	-	1e-14	55.2	0.1	1.8e-14	54.4	0.1	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
CofC	PF01983.16	gi|564288817|ref|YP_008875039.1|	-	4.4e-36	124.1	0.0	4.9e-36	124.0	0.0	1.0	1	0	0	1	1	1	1	Guanylyl	transferase	CofC	like
NTP_transf_3	PF12804.7	gi|564288817|ref|YP_008875039.1|	-	0.0005	20.5	2.4	0.00093	19.6	2.4	1.4	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
CD34_antigen	PF06365.12	gi|564288818|ref|YP_008875040.1|	-	0.0095	15.5	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	CD34/Podocalyxin	family
DUF4366	PF14283.6	gi|564288818|ref|YP_008875040.1|	-	0.012	15.6	0.6	0.055	13.5	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4366)
PTS_IIA	PF02255.16	gi|564288818|ref|YP_008875040.1|	-	0.02	14.9	3.0	0.02	14.9	3.0	2.3	1	1	1	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
DUF4398	PF14346.6	gi|564288818|ref|YP_008875040.1|	-	0.065	13.9	15.7	0.66	10.6	15.7	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
DUF1771	PF08590.10	gi|564288818|ref|YP_008875040.1|	-	1.1	9.6	7.9	0.4	11.1	1.8	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1771)
Tubulin	PF00091.25	gi|564288819|ref|YP_008875041.1|	-	2e-27	96.7	0.0	3.1e-27	96.1	0.0	1.3	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|564288819|ref|YP_008875041.1|	-	0.016	14.4	0.1	0.032	13.4	0.1	1.6	1	1	0	1	1	1	0	Tubulin	like
NAD_binding_10	PF13460.6	gi|564288820|ref|YP_008875042.1|	-	8.4e-32	110.6	0.0	1.1e-31	110.1	0.0	1.1	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|564288820|ref|YP_008875042.1|	-	1.2e-17	64.2	0.0	6.8e-17	61.7	0.0	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|564288820|ref|YP_008875042.1|	-	2e-14	53.2	0.0	1.6e-12	47.1	0.0	2.2	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NmrA	PF05368.13	gi|564288820|ref|YP_008875042.1|	-	1.5e-13	50.8	0.0	1.7e-13	50.7	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
RmlD_sub_bind	PF04321.17	gi|564288820|ref|YP_008875042.1|	-	2.4e-11	43.3	0.0	1.6e-05	24.1	0.0	2.5	2	1	0	2	2	2	2	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.12	gi|564288820|ref|YP_008875042.1|	-	1.3e-06	27.8	0.0	0.0056	15.9	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|564288820|ref|YP_008875042.1|	-	1.5e-05	24.3	0.0	0.00024	20.4	0.0	2.1	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
GDP_Man_Dehyd	PF16363.5	gi|564288820|ref|YP_008875042.1|	-	4.5e-05	23.0	0.0	9.3e-05	22.0	0.0	1.6	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
adh_short	PF00106.25	gi|564288820|ref|YP_008875042.1|	-	0.00014	21.4	0.0	0.00021	20.8	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|564288820|ref|YP_008875042.1|	-	0.00047	20.4	0.0	0.0011	19.3	0.0	1.5	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_2	PF03446.15	gi|564288820|ref|YP_008875042.1|	-	0.0015	18.8	0.0	0.0038	17.4	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
KR	PF08659.10	gi|564288820|ref|YP_008875042.1|	-	0.0031	17.4	0.1	0.013	15.4	0.0	2.0	2	1	0	2	2	2	1	KR	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288820|ref|YP_008875042.1|	-	0.012	15.9	0.0	0.02	15.2	0.0	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|564288820|ref|YP_008875042.1|	-	0.076	13.6	0.0	0.16	12.6	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Glyco_transf_4	PF13439.6	gi|564288820|ref|YP_008875042.1|	-	0.11	12.5	0.0	0.17	11.9	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
DUF4596	PF15363.6	gi|564288820|ref|YP_008875042.1|	-	0.12	12.6	0.1	0.38	11.0	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4596)
Glyco_trans_4_4	PF13579.6	gi|564288820|ref|YP_008875042.1|	-	0.13	12.7	0.0	0.35	11.3	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
2-Hacid_dh_C	PF02826.19	gi|564288820|ref|YP_008875042.1|	-	0.15	11.4	0.0	0.22	10.9	0.0	1.2	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Semialdhyde_dh	PF01118.24	gi|564288820|ref|YP_008875042.1|	-	0.17	12.3	0.0	0.29	11.6	0.0	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Thymidylate_kin	PF02223.17	gi|564288821|ref|YP_008875043.1|	-	1.4e-32	112.9	0.0	1.7e-32	112.6	0.0	1.1	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_18	PF13238.6	gi|564288821|ref|YP_008875043.1|	-	1e-05	26.0	0.0	0.00015	22.3	0.0	2.5	1	1	1	2	2	2	1	AAA	domain
AAA_33	PF13671.6	gi|564288821|ref|YP_008875043.1|	-	2.1e-05	24.7	0.1	6.6e-05	23.1	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
dNK	PF01712.19	gi|564288821|ref|YP_008875043.1|	-	5.8e-05	23.0	0.0	0.00038	20.4	0.0	1.9	1	1	0	1	1	1	1	Deoxynucleoside	kinase
Arf	PF00025.21	gi|564288821|ref|YP_008875043.1|	-	0.026	14.0	0.0	0.036	13.5	0.0	1.2	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
SRPRB	PF09439.10	gi|564288821|ref|YP_008875043.1|	-	0.17	11.3	0.0	0.28	10.6	0.0	1.4	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
SBF	PF01758.16	gi|564288822|ref|YP_008875044.1|	-	0.076	12.7	11.4	0.12	12.0	11.4	1.4	1	1	0	1	1	1	0	Sodium	Bile	acid	symporter	family
DUF2070	PF09843.9	gi|564288822|ref|YP_008875044.1|	-	0.22	9.8	7.1	0.23	9.7	7.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
TssN	PF17555.2	gi|564288822|ref|YP_008875044.1|	-	1	8.7	4.7	1.3	8.3	4.7	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
YqhR	PF11085.8	gi|564288822|ref|YP_008875044.1|	-	1.2	9.0	9.1	1.5	8.7	9.1	1.1	1	0	0	1	1	1	0	Conserved	membrane	protein	YqhR
AsnC_trans_reg	PF01037.21	gi|564288823|ref|YP_008875045.1|	-	3.5e-10	39.7	0.1	3.8e-10	39.6	0.1	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
TrkA_N	PF02254.18	gi|564288824|ref|YP_008875046.1|	-	1.2e-25	90.1	0.6	1.7e-25	89.5	0.6	1.3	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564288824|ref|YP_008875046.1|	-	1.5e-11	44.0	0.1	4.4e-11	42.5	0.0	1.8	2	0	0	2	2	1	1	TrkA-C	domain
FAD_binding_3	PF01494.19	gi|564288824|ref|YP_008875046.1|	-	3.1e-06	26.7	0.2	4.4e-06	26.2	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564288824|ref|YP_008875046.1|	-	1.3e-05	24.9	0.0	2.7e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.16	gi|564288824|ref|YP_008875046.1|	-	1.8e-05	24.5	0.1	4.2e-05	23.2	0.1	1.6	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
DAO	PF01266.24	gi|564288824|ref|YP_008875046.1|	-	2.8e-05	23.9	0.7	3.3e-05	23.6	0.7	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.18	gi|564288824|ref|YP_008875046.1|	-	4.1e-05	23.6	0.3	6.2e-05	23.0	0.3	1.4	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|564288824|ref|YP_008875046.1|	-	9.5e-05	22.8	0.1	0.00018	21.9	0.1	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
IlvN	PF07991.12	gi|564288824|ref|YP_008875046.1|	-	0.0002	21.0	0.1	0.00037	20.1	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
Pyr_redox	PF00070.27	gi|564288824|ref|YP_008875046.1|	-	0.00034	21.1	0.3	0.0008	19.9	0.3	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564288824|ref|YP_008875046.1|	-	0.00036	19.9	0.1	0.00041	19.7	0.1	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|564288824|ref|YP_008875046.1|	-	0.0006	20.0	0.2	0.0013	18.9	0.2	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
2-Hacid_dh_C	PF02826.19	gi|564288824|ref|YP_008875046.1|	-	0.0011	18.4	0.2	0.0019	17.6	0.2	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|564288824|ref|YP_008875046.1|	-	0.0031	18.0	0.0	0.0066	16.9	0.0	1.6	2	0	0	2	2	1	1	XdhC	Rossmann	domain
NAD_binding_10	PF13460.6	gi|564288824|ref|YP_008875046.1|	-	0.0031	17.4	0.4	0.0062	16.4	0.4	1.5	1	0	0	1	1	1	1	NAD(P)H-binding
HI0933_like	PF03486.14	gi|564288824|ref|YP_008875046.1|	-	0.0037	16.0	0.1	0.0065	15.2	0.0	1.4	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|564288824|ref|YP_008875046.1|	-	0.0059	15.7	0.2	0.0059	15.7	0.2	1.1	1	0	0	1	1	1	1	FAD	binding	domain
F420_oxidored	PF03807.17	gi|564288824|ref|YP_008875046.1|	-	0.0073	16.9	0.3	0.045	14.3	0.3	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|564288824|ref|YP_008875046.1|	-	0.0094	16.1	0.1	0.017	15.3	0.0	1.6	2	0	0	2	2	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox_3	PF13738.6	gi|564288824|ref|YP_008875046.1|	-	0.0099	15.2	0.0	0.017	14.4	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.23	gi|564288824|ref|YP_008875046.1|	-	0.01	15.8	0.0	0.034	14.1	0.0	1.8	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|564288824|ref|YP_008875046.1|	-	0.013	15.8	0.1	0.02	15.2	0.1	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Epimerase	PF01370.21	gi|564288824|ref|YP_008875046.1|	-	0.024	14.1	0.1	0.032	13.7	0.1	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
AlaDh_PNT_C	PF01262.21	gi|564288824|ref|YP_008875046.1|	-	0.025	13.9	0.2	0.03	13.6	0.2	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Thi4	PF01946.17	gi|564288824|ref|YP_008875046.1|	-	0.026	13.8	0.0	0.051	12.8	0.0	1.4	1	0	0	1	1	1	0	Thi4	family
AdoHcyase_NAD	PF00670.21	gi|564288824|ref|YP_008875046.1|	-	0.06	13.4	0.2	0.21	11.6	0.1	1.9	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|564288824|ref|YP_008875046.1|	-	0.1	13.4	0.1	0.18	12.7	0.1	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ADH_zinc_N	PF00107.26	gi|564288824|ref|YP_008875046.1|	-	0.13	12.3	1.1	11	6.0	0.1	2.3	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
Methyltransf_31	PF13847.6	gi|564288824|ref|YP_008875046.1|	-	0.16	11.8	0.1	0.3	10.9	0.1	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Glyco_transf_4	PF13439.6	gi|564288824|ref|YP_008875046.1|	-	0.17	11.8	0.7	0.4	10.7	0.3	1.7	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
Glyoxalase	PF00903.25	gi|564288824|ref|YP_008875046.1|	-	0.19	11.9	0.1	0.5	10.6	0.1	1.7	1	1	0	1	1	1	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
NmrA	PF05368.13	gi|564288824|ref|YP_008875046.1|	-	0.26	10.8	0.6	0.8	9.2	0.6	1.6	1	1	1	2	2	2	0	NmrA-like	family
AsnC_trans_reg	PF01037.21	gi|564288825|ref|YP_008875047.1|	-	8.9e-14	51.2	0.7	1e-13	51.1	0.7	1.0	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
GYD	PF08734.11	gi|564288825|ref|YP_008875047.1|	-	0.04	13.9	1.2	0.047	13.7	1.2	1.1	1	0	0	1	1	1	0	GYD	domain
EMP70	PF02990.16	gi|564288828|ref|YP_008875050.1|	-	0.11	11.2	0.1	0.12	11.0	0.1	1.1	1	0	0	1	1	1	0	Endomembrane	protein	70
ABC_tran	PF00005.27	gi|564288829|ref|YP_008875051.1|	-	3.5e-33	115.0	0.0	7.7e-33	113.9	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|564288829|ref|YP_008875051.1|	-	3.6e-17	62.6	0.2	8.9e-17	61.4	0.2	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|564288829|ref|YP_008875051.1|	-	1.3e-05	25.1	3.1	0.0027	17.6	0.1	2.6	2	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|564288829|ref|YP_008875051.1|	-	0.0017	18.7	0.7	0.015	15.6	0.6	2.4	2	1	0	2	2	1	1	AAA	domain
SMC_N	PF02463.19	gi|564288829|ref|YP_008875051.1|	-	0.0025	17.3	0.0	0.0084	15.6	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|564288829|ref|YP_008875051.1|	-	0.023	15.1	0.0	0.074	13.5	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP-synt_ab	PF00006.25	gi|564288829|ref|YP_008875051.1|	-	0.025	14.2	0.0	0.028	14.1	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_25	PF13481.6	gi|564288829|ref|YP_008875051.1|	-	0.035	13.7	0.8	7.3	6.1	0.1	2.6	3	0	0	3	3	3	0	AAA	domain
AAA_16	PF13191.6	gi|564288829|ref|YP_008875051.1|	-	0.036	14.5	0.4	0.1	13.0	0.4	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|564288829|ref|YP_008875051.1|	-	0.066	12.9	0.1	15	5.3	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
RsgA_GTPase	PF03193.16	gi|564288829|ref|YP_008875051.1|	-	0.071	13.0	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
Mg_chelatase	PF01078.21	gi|564288829|ref|YP_008875051.1|	-	0.11	11.9	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
YfdX	PF10938.8	gi|564288829|ref|YP_008875051.1|	-	0.12	12.3	0.0	0.21	11.5	0.0	1.3	1	0	0	1	1	1	0	YfdX	protein
AAA_13	PF13166.6	gi|564288829|ref|YP_008875051.1|	-	0.12	11.0	0.1	3	6.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|564288829|ref|YP_008875051.1|	-	0.12	12.4	1.3	2	8.4	1.3	2.3	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.14	gi|564288829|ref|YP_008875051.1|	-	0.19	11.7	0.2	0.35	10.8	0.2	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
PduV-EutP	PF10662.9	gi|564288829|ref|YP_008875051.1|	-	0.24	11.1	0.2	0.57	9.9	0.2	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
ABC_tran	PF00005.27	gi|564288830|ref|YP_008875052.1|	-	5.7e-30	104.6	0.0	9.6e-30	103.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|564288830|ref|YP_008875052.1|	-	2.5e-18	66.3	0.2	5.4e-18	65.3	0.2	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|564288830|ref|YP_008875052.1|	-	5.2e-07	29.8	0.1	4.6e-06	26.6	0.0	2.0	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288830|ref|YP_008875052.1|	-	8.1e-05	22.2	0.0	0.00012	21.6	0.0	1.2	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564288830|ref|YP_008875052.1|	-	0.019	15.3	0.5	0.19	12.0	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|564288830|ref|YP_008875052.1|	-	0.046	13.5	0.1	0.089	12.6	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Sigma54_activat	PF00158.26	gi|564288830|ref|YP_008875052.1|	-	0.066	12.9	0.1	1.5	8.5	0.0	2.1	2	0	0	2	2	2	0	Sigma-54	interaction	domain
DUF87	PF01935.17	gi|564288830|ref|YP_008875052.1|	-	0.075	13.1	0.1	0.14	12.2	0.1	1.3	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
ATP-synt_ab	PF00006.25	gi|564288830|ref|YP_008875052.1|	-	0.14	11.7	0.0	0.26	10.9	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
BPD_transp_1	PF00528.22	gi|564288831|ref|YP_008875053.1|	-	1.1e-17	64.4	13.5	1.1e-17	64.4	13.5	2.3	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|564288831|ref|YP_008875053.1|	-	0.0001	22.2	0.0	0.0001	22.2	0.0	4.3	6	1	0	6	6	6	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|564288832|ref|YP_008875054.1|	-	1.1e-33	116.6	11.2	1.1e-33	116.6	11.2	2.2	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|564288833|ref|YP_008875055.1|	-	3.2e-65	220.5	4.6	4.9e-65	219.9	4.6	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|564288833|ref|YP_008875055.1|	-	1.1e-07	31.4	3.6	1.8e-07	30.7	3.6	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Fer4_15	PF13459.6	gi|564288834|ref|YP_008875056.1|	-	0.013	16.2	1.0	0.023	15.5	0.7	1.6	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
SHS2_FTSA	PF02491.20	gi|564288834|ref|YP_008875056.1|	-	0.017	15.5	0.1	0.049	14.0	0.1	1.7	1	1	1	2	2	2	0	SHS2	domain	inserted	in	FTSA
MOSC_N	PF03476.16	gi|564288835|ref|YP_008875057.1|	-	2.5e-15	56.4	0.4	5.9e-15	55.2	0.4	1.7	1	1	0	1	1	1	1	MOSC	N-terminal	beta	barrel	domain
MOSC	PF03473.17	gi|564288835|ref|YP_008875057.1|	-	1.4e-06	28.4	0.0	3.1e-06	27.2	0.0	1.6	2	0	0	2	2	2	1	MOSC	domain
Pro_isomerase	PF00160.21	gi|564288836|ref|YP_008875058.1|	-	2.7e-46	157.7	0.0	3.3e-46	157.4	0.0	1.1	1	0	0	1	1	1	1	Cyclophilin	type	peptidyl-prolyl	cis-trans	isomerase/CLD
Abhydrolase_1	PF00561.20	gi|564288837|ref|YP_008875059.1|	-	3.6e-30	105.4	0.2	5.1e-30	105.0	0.2	1.2	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|564288837|ref|YP_008875059.1|	-	4e-24	86.5	10.9	4.9e-24	86.2	10.9	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|564288837|ref|YP_008875059.1|	-	8.1e-14	51.5	0.1	1.7e-13	50.4	0.1	1.6	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
PGAP1	PF07819.13	gi|564288837|ref|YP_008875059.1|	-	0.037	13.7	0.0	0.07	12.8	0.0	1.4	1	0	0	1	1	1	0	PGAP1-like	protein
DLH	PF01738.18	gi|564288837|ref|YP_008875059.1|	-	0.078	12.5	0.0	0.6	9.6	0.0	2.3	2	1	0	2	2	2	0	Dienelactone	hydrolase	family
Glycos_transf_3	PF00591.21	gi|564288838|ref|YP_008875060.1|	-	8.2e-33	114.1	0.1	1.1e-32	113.7	0.1	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|564288838|ref|YP_008875060.1|	-	3.1e-05	23.7	0.5	0.00024	20.9	0.0	2.6	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
MlaC	PF05494.12	gi|564288838|ref|YP_008875060.1|	-	0.092	12.5	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	MlaC	protein
AsnC_trans_reg2	PF17805.1	gi|564288839|ref|YP_008875061.1|	-	4.3e-45	151.8	0.1	1.4e-21	76.4	0.0	2.5	2	0	0	2	2	2	2	AsnC-like	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|564288839|ref|YP_008875061.1|	-	2.9e-14	52.6	0.3	1e-07	31.7	0.0	2.6	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288839|ref|YP_008875061.1|	-	1.2e-06	28.0	0.2	0.023	14.2	0.0	3.3	3	1	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
Response_reg	PF00072.24	gi|564288840|ref|YP_008875062.1|	-	4.2e-19	68.8	0.3	7.6e-19	67.9	0.3	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|564288840|ref|YP_008875062.1|	-	1.7e-17	63.5	8.9	1.7e-17	63.5	8.9	1.8	2	0	0	2	2	2	1	HalX	domain
Methyltransf_24	PF13578.6	gi|564288840|ref|YP_008875062.1|	-	0.17	12.9	1.5	8.2	7.5	0.2	2.3	1	1	1	2	2	2	0	Methyltransferase	domain
ABC_tran_CTD	PF16326.5	gi|564288840|ref|YP_008875062.1|	-	0.18	12.1	3.3	0.42	10.9	1.7	2.1	1	1	1	2	2	2	0	ABC	transporter	C-terminal	domain
GCHY-1	PF02649.14	gi|564288841|ref|YP_008875063.1|	-	3e-75	253.1	0.3	3.4e-75	252.9	0.3	1.0	1	0	0	1	1	1	1	Type	I	GTP	cyclohydrolase	folE2
SfsA	PF03749.13	gi|564288841|ref|YP_008875063.1|	-	0.0093	15.9	0.0	0.022	14.7	0.0	1.6	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
DDE_3	PF13358.6	gi|564288842|ref|YP_008875064.1|	-	2.9e-32	111.5	0.0	3.5e-32	111.2	0.0	1.0	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
rve	PF00665.26	gi|564288842|ref|YP_008875064.1|	-	0.00019	21.6	0.0	0.00026	21.2	0.0	1.2	1	0	0	1	1	1	1	Integrase	core	domain
HTH_33	PF13592.6	gi|564288843|ref|YP_008875065.1|	-	6.7e-18	64.1	1.5	1.1e-17	63.3	0.4	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_32	PF13565.6	gi|564288843|ref|YP_008875065.1|	-	2.9e-08	34.2	0.7	6.1e-08	33.2	0.3	1.7	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_31	PF13560.6	gi|564288843|ref|YP_008875065.1|	-	0.003	17.9	1.4	0.031	14.6	0.1	2.9	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564288843|ref|YP_008875065.1|	-	0.015	15.1	0.0	0.038	13.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_21	PF13276.6	gi|564288843|ref|YP_008875065.1|	-	0.019	15.1	0.1	0.11	12.7	0.0	2.1	2	1	0	2	2	2	0	HTH-like	domain
HTH_29	PF13551.6	gi|564288843|ref|YP_008875065.1|	-	0.025	14.6	0.2	0.13	12.4	0.0	2.2	2	1	0	2	2	2	0	Winged	helix-turn	helix
DUF1778	PF08681.11	gi|564288843|ref|YP_008875065.1|	-	0.087	12.8	0.2	1.4	8.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1778)
DDT	PF02791.17	gi|564288843|ref|YP_008875065.1|	-	0.12	12.7	0.1	9.2	6.7	0.0	2.2	2	0	0	2	2	2	0	DDT	domain
TrmB	PF01978.19	gi|564288844|ref|YP_008875066.1|	-	1.2e-21	76.4	0.2	2.2e-21	75.5	0.2	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Regulator_TrmB	PF11495.8	gi|564288844|ref|YP_008875066.1|	-	0.00039	19.7	0.0	0.00058	19.1	0.0	1.3	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|564288844|ref|YP_008875066.1|	-	0.0066	16.4	0.0	0.024	14.6	0.0	1.9	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
PLDc_2	PF13091.6	gi|564288844|ref|YP_008875066.1|	-	0.0099	15.8	0.1	0.087	12.7	0.0	2.4	2	1	0	2	2	2	1	PLD-like	domain
E2F_TDP	PF02319.20	gi|564288844|ref|YP_008875066.1|	-	0.035	14.1	0.0	0.095	12.8	0.0	1.7	1	0	0	1	1	1	0	E2F/DP	family	winged-helix	DNA-binding	domain
Med2	PF11214.8	gi|564288844|ref|YP_008875066.1|	-	0.067	13.4	0.0	0.14	12.3	0.0	1.6	1	0	0	1	1	1	0	Mediator	complex	subunit	2
Thioredox_DsbH	PF03190.15	gi|564288845|ref|YP_008875067.1|	-	9.4e-20	71.2	0.0	1.9e-19	70.2	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|564288845|ref|YP_008875067.1|	-	4.8e-10	39.5	0.0	1.1e-09	38.3	0.0	1.7	1	0	0	1	1	1	1	Thioredoxin-like
Glyco_hydro_88	PF07470.13	gi|564288845|ref|YP_008875067.1|	-	4.2e-05	22.8	0.0	0.042	12.9	0.0	2.7	1	1	0	2	2	2	2	Glycosyl	Hydrolase	Family	88
Thioredoxin	PF00085.20	gi|564288845|ref|YP_008875067.1|	-	0.00076	19.4	0.0	0.0015	18.5	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288845|ref|YP_008875067.1|	-	0.011	16.2	0.0	0.021	15.2	0.0	1.5	1	0	0	1	1	1	0	Thioredoxin-like	domain
Pec_lyase	PF09492.10	gi|564288845|ref|YP_008875067.1|	-	0.021	14.1	0.2	0.42	9.9	0.1	2.2	2	0	0	2	2	2	0	Pectic	acid	lyase
Glyco_hydro_127	PF07944.12	gi|564288845|ref|YP_008875067.1|	-	0.1	11.1	0.2	9.1	4.6	0.1	2.2	2	0	0	2	2	2	0	Beta-L-arabinofuranosidase,	GH127
Glyco_hydro_76	PF03663.14	gi|564288845|ref|YP_008875067.1|	-	0.51	9.8	3.3	5.2	6.5	3.1	2.3	2	1	0	2	2	2	0	Glycosyl	hydrolase	family	76
p450	PF00067.22	gi|564288846|ref|YP_008875068.1|	-	2.5e-79	267.2	0.0	2.8e-79	267.0	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
FxsA	PF04186.13	gi|564288847|ref|YP_008875069.1|	-	1.1e-29	102.8	10.3	1.4e-29	102.4	10.3	1.1	1	0	0	1	1	1	1	FxsA	cytoplasmic	membrane	protein
Methyltransf_25	PF13649.6	gi|564288848|ref|YP_008875070.1|	-	1.9e-17	63.7	0.0	4.1e-17	62.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288848|ref|YP_008875070.1|	-	6e-14	52.1	0.0	8.1e-14	51.7	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288848|ref|YP_008875070.1|	-	9.3e-12	45.6	0.0	2e-11	44.5	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288848|ref|YP_008875070.1|	-	9.4e-12	45.4	0.1	2.5e-11	44.0	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288848|ref|YP_008875070.1|	-	3.3e-11	43.3	0.0	3.9e-11	43.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288848|ref|YP_008875070.1|	-	7.6e-08	32.1	0.0	1e-07	31.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
TehB	PF03848.14	gi|564288848|ref|YP_008875070.1|	-	4.2e-05	23.0	0.0	7e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Ubie_methyltran	PF01209.18	gi|564288848|ref|YP_008875070.1|	-	4.7e-05	22.8	0.0	8.8e-05	21.9	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
NodS	PF05401.11	gi|564288848|ref|YP_008875070.1|	-	0.00011	21.9	0.0	0.00015	21.5	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
CMAS	PF02353.20	gi|564288848|ref|YP_008875070.1|	-	0.00013	21.4	0.0	0.00018	20.9	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MetW	PF07021.12	gi|564288848|ref|YP_008875070.1|	-	0.014	15.0	0.0	0.023	14.3	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
N2227	PF07942.12	gi|564288848|ref|YP_008875070.1|	-	0.018	14.3	0.0	0.033	13.4	0.0	1.4	1	0	0	1	1	1	0	N2227-like	protein
Methyltransf_17	PF12692.7	gi|564288848|ref|YP_008875070.1|	-	0.13	12.2	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-methionine	methyltransferase
HTH_10	PF04967.12	gi|564288849|ref|YP_008875071.1|	-	0.019	14.7	0.1	0.49	10.2	0.0	2.5	2	1	0	2	2	2	0	HTH	DNA	binding	domain
FidL_like	PF15941.5	gi|564288849|ref|YP_008875071.1|	-	0.15	12.6	0.2	1.7	9.1	0.1	2.4	2	0	0	2	2	2	0	FidL-like	putative	membrane	protein
TAT_signal	PF10518.9	gi|564288849|ref|YP_008875071.1|	-	0.32	10.9	2.8	0.58	10.1	2.8	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
LMWPc	PF01451.21	gi|564288850|ref|YP_008875072.1|	-	1.2e-24	87.3	0.3	2.8e-24	86.1	0.3	1.5	1	1	0	1	1	1	1	Low	molecular	weight	phosphotyrosine	protein	phosphatase
DUF4013	PF13197.6	gi|564288851|ref|YP_008875073.1|	-	1e-23	84.0	15.0	1e-23	84.0	15.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF4013)
Nre_N	PF04894.12	gi|564288852|ref|YP_008875074.1|	-	5.9e-97	324.7	0.0	7.2e-97	324.4	0.0	1.1	1	0	0	1	1	1	1	Archaeal	Nre,	N-terminal
Nre_C	PF04895.12	gi|564288852|ref|YP_008875074.1|	-	7.8e-41	138.4	0.0	1.5e-40	137.5	0.0	1.5	1	0	0	1	1	1	1	Archaeal	Nre,	C-terminal
LEA_3	PF03242.13	gi|564288852|ref|YP_008875074.1|	-	0.13	13.0	0.1	0.44	11.3	0.1	1.8	1	0	0	1	1	1	0	Late	embryogenesis	abundant	protein
7TM-7TMR_HD	PF07698.11	gi|564288853|ref|YP_008875075.1|	-	0.038	13.8	9.8	0.047	13.5	9.8	1.0	1	0	0	1	1	1	0	7TM	receptor	with	intracellular	HD	hydrolase
DUF2721	PF11026.8	gi|564288853|ref|YP_008875075.1|	-	0.93	9.4	10.3	0.18	11.7	1.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
RVT_3	PF13456.6	gi|564288854|ref|YP_008875076.1|	-	7.4e-28	96.9	0.0	4.7e-27	94.2	0.0	1.9	1	1	1	2	2	2	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|564288854|ref|YP_008875076.1|	-	2.4e-11	44.0	0.0	4.6e-11	43.1	0.0	1.4	1	1	0	1	1	1	1	RNase	H
ChitinaseA_N	PF08329.10	gi|564288854|ref|YP_008875076.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Chitinase	A,	N-terminal	domain
Phage_int_SAM_4	PF13495.6	gi|564288855|ref|YP_008875077.1|	-	0.1	13.1	0.0	0.16	12.5	0.0	1.3	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
PadR	PF03551.14	gi|564288856|ref|YP_008875078.1|	-	4.6e-18	64.9	0.3	6.4e-18	64.5	0.3	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|564288856|ref|YP_008875078.1|	-	4.5e-05	23.8	0.1	9.8e-05	22.8	0.0	1.6	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|564288856|ref|YP_008875078.1|	-	0.0022	17.8	0.0	0.004	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
RTP	PF02334.16	gi|564288856|ref|YP_008875078.1|	-	0.019	15.6	0.1	0.029	15.0	0.1	1.2	1	0	0	1	1	1	0	Replication	terminator	protein
HTH_45	PF14947.6	gi|564288856|ref|YP_008875078.1|	-	0.024	14.6	0.1	0.037	14.0	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF4364	PF14277.6	gi|564288856|ref|YP_008875078.1|	-	0.066	13.0	0.0	0.089	12.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
FUR	PF01475.19	gi|564288856|ref|YP_008875078.1|	-	0.069	13.3	0.0	0.087	13.0	0.0	1.1	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Pyrophosphatase	PF00719.19	gi|564288857|ref|YP_008875079.1|	-	6.7e-51	172.3	1.6	7.7e-51	172.1	1.6	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
Phosphodiest	PF01663.22	gi|564288859|ref|YP_008875081.1|	-	2.6e-59	201.6	1.0	3.1e-59	201.4	1.0	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF2063	PF09836.9	gi|564288859|ref|YP_008875081.1|	-	0.089	13.0	0.1	0.17	12.1	0.1	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	domain
Sulfatase	PF00884.23	gi|564288859|ref|YP_008875081.1|	-	0.42	10.0	3.8	0.74	9.1	1.2	2.3	3	0	0	3	3	3	0	Sulfatase
Tubulin	PF00091.25	gi|564288860|ref|YP_008875082.1|	-	4.8e-27	95.4	0.1	8.4e-27	94.6	0.1	1.4	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
Tubulin_2	PF13809.6	gi|564288860|ref|YP_008875082.1|	-	0.00028	20.2	1.5	0.00065	19.0	0.2	2.1	2	1	1	3	3	3	1	Tubulin	like
HEM4	PF02602.15	gi|564288860|ref|YP_008875082.1|	-	0.0037	16.6	0.2	0.0062	15.9	0.2	1.3	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
HTH_24	PF13412.6	gi|564288861|ref|YP_008875083.1|	-	5e-07	29.2	0.0	7.2e-07	28.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564288861|ref|YP_008875083.1|	-	3.8e-05	23.5	0.1	5e-05	23.1	0.1	1.2	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|564288861|ref|YP_008875083.1|	-	0.00066	19.3	0.1	0.00091	18.8	0.1	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|564288861|ref|YP_008875083.1|	-	0.002	18.2	0.0	0.0029	17.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|564288861|ref|YP_008875083.1|	-	0.0033	17.2	0.0	0.004	17.0	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_Crp_2	PF13545.6	gi|564288861|ref|YP_008875083.1|	-	0.0064	16.4	0.0	0.0071	16.3	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288861|ref|YP_008875083.1|	-	0.0097	15.8	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|564288861|ref|YP_008875083.1|	-	0.011	15.6	0.0	0.016	15.1	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_11	PF08279.12	gi|564288861|ref|YP_008875083.1|	-	0.016	15.1	0.0	0.025	14.5	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
TrmB	PF01978.19	gi|564288861|ref|YP_008875083.1|	-	0.025	14.5	0.1	0.032	14.1	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564288861|ref|YP_008875083.1|	-	0.042	13.6	0.1	0.065	13.0	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|564288861|ref|YP_008875083.1|	-	0.053	13.2	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
Rrf2	PF02082.20	gi|564288861|ref|YP_008875083.1|	-	0.063	13.6	0.0	0.085	13.2	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_43	PF09904.9	gi|564288861|ref|YP_008875083.1|	-	0.16	11.9	0.0	0.23	11.4	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
Polyketide_cyc2	PF10604.9	gi|564288862|ref|YP_008875084.1|	-	2.3e-19	70.1	1.9	3.1e-19	69.7	1.9	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|564288862|ref|YP_008875084.1|	-	9.6e-07	29.1	0.1	2.2e-06	27.9	0.1	1.6	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|564288862|ref|YP_008875084.1|	-	0.061	13.6	0.1	0.1	12.8	0.1	1.5	1	0	0	1	1	1	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
Copper-bind	PF00127.20	gi|564288863|ref|YP_008875085.1|	-	1.4e-15	57.5	0.1	4e-15	56.1	0.1	1.7	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|564288863|ref|YP_008875085.1|	-	0.0018	18.0	11.1	0.0018	18.0	11.1	2.7	4	0	0	4	4	4	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cupredoxin_1	PF13473.6	gi|564288863|ref|YP_008875085.1|	-	0.037	14.2	0.0	0.059	13.5	0.0	1.3	1	0	0	1	1	1	0	Cupredoxin-like	domain
AMP-binding	PF00501.28	gi|564288866|ref|YP_008875088.1|	-	0.0002	20.1	0.0	0.076	11.6	0.0	2.2	2	0	0	2	2	2	2	AMP-binding	enzyme
MazG	PF03819.17	gi|564288867|ref|YP_008875089.1|	-	7e-05	22.9	0.4	0.00029	21.0	0.4	1.9	1	1	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
DnaJ_C	PF01556.18	gi|564288868|ref|YP_008875090.1|	-	1.6e-45	154.9	0.0	2.2e-45	154.4	0.0	1.2	1	0	0	1	1	1	1	DnaJ	C	terminal	domain
DnaJ	PF00226.31	gi|564288868|ref|YP_008875090.1|	-	3.7e-24	84.6	4.4	3.7e-24	84.6	4.4	2.2	3	0	0	3	3	3	1	DnaJ	domain
DnaJ_CXXCXGXG	PF00684.19	gi|564288868|ref|YP_008875090.1|	-	5.8e-13	49.0	17.9	1.3e-12	47.9	17.9	1.6	1	0	0	1	1	1	1	DnaJ	central	domain
DUF5351	PF17302.2	gi|564288868|ref|YP_008875090.1|	-	0.00032	20.8	19.6	0.08	13.1	2.0	4.7	4	0	0	4	4	4	2	Family	of	unknown	function	(DUF5351)
Anti-TRAP	PF15777.5	gi|564288868|ref|YP_008875090.1|	-	0.0019	18.1	16.2	0.023	14.6	6.6	2.6	1	1	1	2	2	2	2	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
A2L_zn_ribbon	PF08792.10	gi|564288868|ref|YP_008875090.1|	-	0.02	14.6	5.9	0.068	12.9	0.1	3.3	2	1	1	3	3	3	0	A2L	zinc	ribbon	domain
Caldesmon	PF02029.15	gi|564288868|ref|YP_008875090.1|	-	0.031	13.1	3.3	0.05	12.4	3.3	1.2	1	0	0	1	1	1	0	Caldesmon
RPT	PF13446.6	gi|564288868|ref|YP_008875090.1|	-	0.035	14.0	0.1	0.075	13.0	0.1	1.5	1	0	0	1	1	1	0	A	repeated	domain	in	UCH-protein
HypA	PF01155.19	gi|564288868|ref|YP_008875090.1|	-	0.51	10.4	10.3	2.4	8.2	2.7	2.3	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
GRP	PF07172.11	gi|564288868|ref|YP_008875090.1|	-	6.6	7.5	21.9	2	9.2	18.1	2.2	2	0	0	2	2	2	0	Glycine	rich	protein	family
DZR	PF12773.7	gi|564288868|ref|YP_008875090.1|	-	9	6.4	13.1	49	4.1	13.1	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
Pilin_N	PF07790.11	gi|564288869|ref|YP_008875091.1|	-	0.00039	21.3	0.2	0.0021	18.9	0.1	2.0	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
HalOD1	PF18545.1	gi|564288870|ref|YP_008875092.1|	-	6.7e-19	67.9	2.2	6.7e-19	67.9	2.2	1.4	2	0	0	2	2	2	1	Halobacterial	output	domain	1
TrmB	PF01978.19	gi|564288871|ref|YP_008875093.1|	-	8.4e-19	67.2	0.1	3.1e-18	65.4	0.0	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564288871|ref|YP_008875093.1|	-	0.0061	16.4	0.2	0.13	12.2	0.0	2.5	2	0	0	2	2	2	1	MarR	family
E2F_TDP	PF02319.20	gi|564288871|ref|YP_008875093.1|	-	0.011	15.8	0.0	0.049	13.7	0.0	2.1	1	1	1	2	2	2	0	E2F/DP	family	winged-helix	DNA-binding	domain
DUF2250	PF10007.9	gi|564288871|ref|YP_008875093.1|	-	0.048	13.8	0.0	0.26	11.4	0.0	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GntR	PF00392.21	gi|564288871|ref|YP_008875093.1|	-	0.057	13.1	0.0	0.18	11.5	0.0	1.9	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
L27_2	PF09045.10	gi|564288871|ref|YP_008875093.1|	-	0.17	11.9	0.9	1	9.3	0.2	2.6	3	1	0	3	3	3	0	L27_2
HTH_27	PF13463.6	gi|564288871|ref|YP_008875093.1|	-	0.19	12.2	0.7	3.3	8.3	0.0	3.2	4	0	0	4	4	4	0	Winged	helix	DNA-binding	domain
HSP70	PF00012.20	gi|564288873|ref|YP_008875095.1|	-	9.9e-244	810.0	20.2	9.1e-242	803.5	20.2	2.0	1	1	0	1	1	1	1	Hsp70	protein
MreB_Mbl	PF06723.13	gi|564288873|ref|YP_008875095.1|	-	1.7e-20	73.1	0.5	1.7e-20	73.1	0.5	2.5	2	1	0	2	2	2	1	MreB/Mbl	protein
StbA	PF06406.11	gi|564288873|ref|YP_008875095.1|	-	0.001	18.4	0.2	0.0077	15.5	0.0	2.4	3	0	0	3	3	3	1	StbA	protein
FGGY_C	PF02782.16	gi|564288873|ref|YP_008875095.1|	-	0.0086	15.8	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
eIF3_subunit	PF08597.10	gi|564288873|ref|YP_008875095.1|	-	1.7	8.5	22.9	0.023	14.6	12.6	2.7	3	0	0	3	3	3	0	Translation	initiation	factor	eIF3	subunit
FIVAR	PF07554.13	gi|564288873|ref|YP_008875095.1|	-	1.8	9.4	9.9	0.068	13.9	2.0	2.9	3	0	0	3	3	3	0	FIVAR	domain
Cwf_Cwc_15	PF04889.12	gi|564288873|ref|YP_008875095.1|	-	2.7	7.6	22.4	11	5.7	22.4	2.0	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
DUF4446	PF14584.6	gi|564288873|ref|YP_008875095.1|	-	5.5	7.0	6.6	1.1	9.2	2.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
GrpE	PF01025.19	gi|564288874|ref|YP_008875096.1|	-	2.5e-42	144.4	4.9	3.8e-42	143.8	4.9	1.2	1	0	0	1	1	1	1	GrpE
OmpH	PF03938.14	gi|564288874|ref|YP_008875096.1|	-	3.6e-05	24.1	3.6	5.6e-05	23.5	3.6	1.4	1	0	0	1	1	1	1	Outer	membrane	protein	(OmpH-like)
Fez1	PF06818.15	gi|564288874|ref|YP_008875096.1|	-	0.00019	21.9	3.8	0.00027	21.5	3.8	1.3	1	0	0	1	1	1	1	Fez1
Spc7	PF08317.11	gi|564288874|ref|YP_008875096.1|	-	0.00039	19.4	5.7	0.00059	18.8	5.7	1.2	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF16	PF01519.16	gi|564288874|ref|YP_008875096.1|	-	0.00067	20.1	2.1	0.0012	19.3	2.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF16
PsbQ	PF05757.11	gi|564288874|ref|YP_008875096.1|	-	0.00068	19.4	2.9	0.0022	17.7	2.9	2.0	1	1	0	1	1	1	1	Oxygen	evolving	enhancer	protein	3	(PsbQ)
DUF641	PF04859.12	gi|564288874|ref|YP_008875096.1|	-	0.00082	19.7	1.3	0.0019	18.5	1.3	1.6	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF641)
FAM76	PF16046.5	gi|564288874|ref|YP_008875096.1|	-	0.0017	17.8	4.8	0.0021	17.5	4.8	1.1	1	0	0	1	1	1	1	FAM76	protein
Phage_tail_NK	PF16532.5	gi|564288874|ref|YP_008875096.1|	-	0.0021	17.7	0.3	0.0035	17.0	0.3	1.3	1	0	0	1	1	1	1	Sf6-type	phage	tail	needle	knob	or	tip	of	some	Caudovirales
Exonuc_VII_L	PF02601.15	gi|564288874|ref|YP_008875096.1|	-	0.0045	16.6	0.9	0.0051	16.4	0.9	1.1	1	0	0	1	1	1	1	Exonuclease	VII,	large	subunit
UPF0242	PF06785.11	gi|564288874|ref|YP_008875096.1|	-	0.0048	17.0	6.4	0.0057	16.8	6.4	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF3584	PF12128.8	gi|564288874|ref|YP_008875096.1|	-	0.0048	14.5	9.8	0.0067	14.0	9.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Atg14	PF10186.9	gi|564288874|ref|YP_008875096.1|	-	0.0049	16.0	3.8	0.0063	15.6	3.8	1.1	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF812	PF05667.11	gi|564288874|ref|YP_008875096.1|	-	0.005	15.8	7.4	0.006	15.5	7.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
Bacillus_HBL	PF05791.11	gi|564288874|ref|YP_008875096.1|	-	0.0072	16.2	3.0	0.014	15.2	3.0	1.5	1	0	0	1	1	1	1	Bacillus	haemolytic	enterotoxin	(HBL)
Med9	PF07544.13	gi|564288874|ref|YP_008875096.1|	-	0.0074	16.4	4.9	0.0074	16.4	4.9	2.8	2	1	0	2	2	2	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
FliJ	PF02050.16	gi|564288874|ref|YP_008875096.1|	-	0.012	15.8	8.7	0.023	14.9	8.7	1.4	1	0	0	1	1	1	0	Flagellar	FliJ	protein
HMMR_N	PF15905.5	gi|564288874|ref|YP_008875096.1|	-	0.014	14.9	8.4	0.019	14.5	8.4	1.1	1	0	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
YscO	PF07321.12	gi|564288874|ref|YP_008875096.1|	-	0.016	15.2	11.0	0.016	15.2	11.0	1.7	2	0	0	2	2	1	0	Type	III	secretion	protein	YscO
FliD_C	PF07195.12	gi|564288874|ref|YP_008875096.1|	-	0.018	14.5	0.7	0.029	13.8	0.7	1.4	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
TPR_MLP1_2	PF07926.12	gi|564288874|ref|YP_008875096.1|	-	0.024	14.7	9.7	0.024	14.7	9.7	1.8	2	0	0	2	2	1	0	TPR/MLP1/MLP2-like	protein
SlyX	PF04102.12	gi|564288874|ref|YP_008875096.1|	-	0.027	15.1	8.9	0.027	15.1	8.9	2.3	2	1	0	2	2	1	0	SlyX
Spectrin	PF00435.21	gi|564288874|ref|YP_008875096.1|	-	0.03	14.8	7.5	2.1	8.9	0.2	2.6	1	1	1	2	2	2	0	Spectrin	repeat
Cluap1	PF10234.9	gi|564288874|ref|YP_008875096.1|	-	0.036	13.5	6.4	0.041	13.3	5.6	1.4	1	1	0	1	1	1	0	Clusterin-associated	protein-1
Golgin_A5	PF09787.9	gi|564288874|ref|YP_008875096.1|	-	0.039	13.4	9.1	0.05	13.1	9.1	1.3	1	0	0	1	1	1	0	Golgin	subfamily	A	member	5
BshC	PF10079.9	gi|564288874|ref|YP_008875096.1|	-	0.044	12.5	2.2	0.055	12.2	2.2	1.1	1	0	0	1	1	1	0	Bacillithiol	biosynthesis	BshC
HlyD_2	PF12700.7	gi|564288874|ref|YP_008875096.1|	-	0.045	12.5	2.3	0.058	12.1	2.3	1.1	1	0	0	1	1	1	0	HlyD	family	secretion	protein
OrfB_IS605	PF01385.19	gi|564288874|ref|YP_008875096.1|	-	0.053	13.7	2.6	0.084	13.1	2.6	1.3	1	0	0	1	1	1	0	Probable	transposase
YabA	PF06156.13	gi|564288874|ref|YP_008875096.1|	-	0.057	14.1	5.0	0.098	13.3	5.0	1.4	1	0	0	1	1	1	0	Initiation	control	protein	YabA
Pox_A_type_inc	PF04508.12	gi|564288874|ref|YP_008875096.1|	-	0.06	13.2	0.5	0.06	13.2	0.5	2.5	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
DLP_helical	PF18709.1	gi|564288874|ref|YP_008875096.1|	-	0.062	12.5	3.1	0.082	12.1	3.1	1.3	1	0	0	1	1	1	0	Dynamin-like	helical	domain
FlaC_arch	PF05377.11	gi|564288874|ref|YP_008875096.1|	-	0.075	13.4	3.2	0.12	12.8	1.7	2.1	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Herpes_UL6	PF01763.16	gi|564288874|ref|YP_008875096.1|	-	0.097	11.2	1.3	0.11	11.0	1.3	1.1	1	0	0	1	1	1	0	Herpesvirus	UL6	like
Macoilin	PF09726.9	gi|564288874|ref|YP_008875096.1|	-	0.11	11.0	6.1	0.15	10.6	6.1	1.1	1	0	0	1	1	1	0	Macoilin	family
DUF4806	PF16064.5	gi|564288874|ref|YP_008875096.1|	-	0.13	12.6	1.3	0.23	11.8	1.3	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4806)
VitD-bind_III	PF09164.10	gi|564288874|ref|YP_008875096.1|	-	0.14	12.2	1.2	0.36	10.8	1.2	1.7	1	0	0	1	1	1	0	Vitamin	D	binding	protein,	domain	III
Surfac_D-trimer	PF09006.11	gi|564288874|ref|YP_008875096.1|	-	0.14	12.0	1.7	4.3	7.3	1.7	2.3	1	1	0	1	1	1	0	Lung	surfactant	protein	D	coiled-coil	trimerisation
TMPIT	PF07851.13	gi|564288874|ref|YP_008875096.1|	-	0.2	10.9	1.5	0.27	10.4	1.5	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Fmp27_WPPW	PF10359.9	gi|564288874|ref|YP_008875096.1|	-	0.31	9.9	10.2	0.21	10.4	9.1	1.3	1	1	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
NPV_P10	PF05531.12	gi|564288874|ref|YP_008875096.1|	-	0.35	11.4	4.6	1.6	9.3	4.6	2.3	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
DUF2730	PF10805.8	gi|564288874|ref|YP_008875096.1|	-	0.5	10.5	3.3	1	9.5	3.3	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
V_ATPase_I	PF01496.19	gi|564288874|ref|YP_008875096.1|	-	0.57	8.0	2.0	0.59	8.0	2.0	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
TarH	PF02203.15	gi|564288874|ref|YP_008875096.1|	-	0.68	9.8	5.2	7.6	6.4	4.9	2.4	1	1	1	2	2	2	0	Tar	ligand	binding	domain	homologue
XhlA	PF10779.9	gi|564288874|ref|YP_008875096.1|	-	0.79	10.0	5.4	1	9.6	4.1	1.9	1	1	1	2	2	2	0	Haemolysin	XhlA
Fib_alpha	PF08702.10	gi|564288874|ref|YP_008875096.1|	-	0.8	9.9	6.4	2.2	8.4	6.2	1.6	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CENP-Q	PF13094.6	gi|564288874|ref|YP_008875096.1|	-	0.93	9.7	16.4	0.43	10.8	14.1	1.5	1	1	1	2	2	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
PilJ	PF13675.6	gi|564288874|ref|YP_008875096.1|	-	0.98	9.5	6.0	2.4	8.2	5.0	2.1	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
FemAB	PF02388.16	gi|564288874|ref|YP_008875096.1|	-	1.6	7.5	5.1	2.2	7.1	5.1	1.1	1	0	0	1	1	1	0	FemAB	family
Phage_GPO	PF05929.11	gi|564288874|ref|YP_008875096.1|	-	1.7	8.2	8.3	1.2	8.7	6.3	1.6	1	1	0	1	1	1	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
PhoU	PF01895.19	gi|564288874|ref|YP_008875096.1|	-	1.7	9.2	10.3	1.1	9.8	5.2	2.7	2	1	1	3	3	2	0	PhoU	domain
Spc24	PF08286.11	gi|564288874|ref|YP_008875096.1|	-	2.1	8.6	8.4	6.2	7.1	8.3	2.0	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
ANAPC_CDC26	PF10471.9	gi|564288874|ref|YP_008875096.1|	-	4	8.3	13.1	1.7	9.5	8.1	2.5	2	1	0	2	2	2	0	Anaphase-promoting	complex	APC	subunit	CDC26
FUSC	PF04632.12	gi|564288874|ref|YP_008875096.1|	-	4.6	5.6	5.8	10	4.5	5.1	1.6	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
DivIC	PF04977.15	gi|564288874|ref|YP_008875096.1|	-	5.6	6.8	9.5	3.8	7.3	1.7	2.4	1	1	1	2	2	2	0	Septum	formation	initiator
DUF1328	PF07043.13	gi|564288875|ref|YP_008875097.1|	-	5.6e-13	48.9	15.3	7.5e-13	48.5	15.3	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1328)
TruB_C_2	PF16198.5	gi|564288877|ref|YP_008875099.1|	-	5.4e-22	77.7	0.2	1.2e-21	76.6	0.2	1.6	1	0	0	1	1	1	1	tRNA	pseudouridylate	synthase	B	C-terminal	domain
TruB_N	PF01509.18	gi|564288877|ref|YP_008875099.1|	-	8.7e-22	78.1	0.1	8.2e-13	49.0	0.0	3.2	1	1	1	2	2	2	2	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
DKCLD	PF08068.12	gi|564288877|ref|YP_008875099.1|	-	1.1e-07	31.8	0.0	2.3e-07	30.8	0.0	1.5	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.20	gi|564288877|ref|YP_008875099.1|	-	0.002	18.1	0.1	0.0041	17.0	0.1	1.5	1	0	0	1	1	1	1	PUA	domain
Cytidylate_kin2	PF13189.6	gi|564288878|ref|YP_008875100.1|	-	7.8e-21	75.0	1.1	9.5e-19	68.2	1.1	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.6	gi|564288878|ref|YP_008875100.1|	-	3.9e-19	69.5	0.0	5e-19	69.1	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|564288878|ref|YP_008875100.1|	-	3.6e-13	50.1	0.0	4.7e-13	49.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|564288878|ref|YP_008875100.1|	-	6.6e-13	48.9	2.4	5.9e-08	32.7	0.1	2.1	1	1	1	2	2	2	2	Cytidylate	kinase
AAA_33	PF13671.6	gi|564288878|ref|YP_008875100.1|	-	1.5e-10	41.4	0.1	9e-09	35.6	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.22	gi|564288878|ref|YP_008875100.1|	-	7.1e-07	29.5	0.5	4e-06	27.0	0.5	1.9	1	1	0	1	1	1	1	Shikimate	kinase
ADK	PF00406.22	gi|564288878|ref|YP_008875100.1|	-	2.4e-05	24.5	0.0	4e-05	23.7	0.0	1.4	1	1	0	1	1	1	1	Adenylate	kinase
AAA_16	PF13191.6	gi|564288878|ref|YP_008875100.1|	-	6.8e-05	23.3	0.0	8.8e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.6	gi|564288878|ref|YP_008875100.1|	-	0.00025	21.4	0.0	0.00035	20.8	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|564288878|ref|YP_008875100.1|	-	0.00026	20.9	0.0	0.00039	20.4	0.0	1.2	1	0	0	1	1	1	1	NACHT	domain
dNK	PF01712.19	gi|564288878|ref|YP_008875100.1|	-	0.00042	20.2	0.0	0.0039	17.1	0.0	2.1	2	0	0	2	2	2	1	Deoxynucleoside	kinase
AAA_30	PF13604.6	gi|564288878|ref|YP_008875100.1|	-	0.00088	19.0	0.8	0.092	12.4	0.1	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|564288878|ref|YP_008875100.1|	-	0.0021	18.3	0.0	0.003	17.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.22	gi|564288878|ref|YP_008875100.1|	-	0.0023	18.3	0.0	0.0039	17.5	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
AAA	PF00004.29	gi|564288878|ref|YP_008875100.1|	-	0.0034	17.8	0.0	0.0052	17.2	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_tran	PF00005.27	gi|564288878|ref|YP_008875100.1|	-	0.011	16.2	0.0	0.013	16.0	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
CoaE	PF01121.20	gi|564288878|ref|YP_008875100.1|	-	0.014	15.1	0.1	0.12	12.0	0.0	2.0	1	1	0	2	2	2	0	Dephospho-CoA	kinase
AAA_23	PF13476.6	gi|564288878|ref|YP_008875100.1|	-	0.014	15.9	0.1	0.02	15.4	0.1	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564288878|ref|YP_008875100.1|	-	0.016	14.8	0.3	0.028	14.0	0.3	1.5	1	1	0	1	1	1	0	AAA	domain
PRK	PF00485.18	gi|564288878|ref|YP_008875100.1|	-	0.016	14.9	0.1	0.058	13.1	0.0	2.0	2	1	1	3	3	3	0	Phosphoribulokinase	/	Uridine	kinase	family
ATP_bind_1	PF03029.17	gi|564288878|ref|YP_008875100.1|	-	0.038	13.8	0.0	0.059	13.1	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
KTI12	PF08433.10	gi|564288878|ref|YP_008875100.1|	-	0.039	13.4	0.0	0.059	12.8	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
NB-ARC	PF00931.22	gi|564288878|ref|YP_008875100.1|	-	0.04	13.1	0.0	0.06	12.5	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
NTPase_1	PF03266.15	gi|564288878|ref|YP_008875100.1|	-	0.041	13.8	0.0	0.06	13.3	0.0	1.2	1	0	0	1	1	1	0	NTPase
AAA_29	PF13555.6	gi|564288878|ref|YP_008875100.1|	-	0.042	13.6	0.1	0.12	12.1	0.1	1.7	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|564288878|ref|YP_008875100.1|	-	0.053	13.5	0.0	0.11	12.4	0.0	1.4	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Viral_helicase1	PF01443.18	gi|564288878|ref|YP_008875100.1|	-	0.06	13.1	0.0	0.083	12.6	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
T2SSE	PF00437.20	gi|564288878|ref|YP_008875100.1|	-	0.067	12.2	0.1	0.1	11.6	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
TsaE	PF02367.17	gi|564288878|ref|YP_008875100.1|	-	0.085	12.9	0.0	0.17	11.8	0.0	1.5	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
CobU	PF02283.16	gi|564288878|ref|YP_008875100.1|	-	0.12	12.0	0.2	0.29	10.7	0.1	1.6	2	0	0	2	2	2	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Zeta_toxin	PF06414.12	gi|564288878|ref|YP_008875100.1|	-	0.13	11.5	0.0	0.22	10.8	0.0	1.5	2	0	0	2	2	2	0	Zeta	toxin
AAA_24	PF13479.6	gi|564288878|ref|YP_008875100.1|	-	0.13	11.9	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|564288878|ref|YP_008875100.1|	-	0.16	11.8	0.0	0.33	10.8	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
DUF87	PF01935.17	gi|564288878|ref|YP_008875100.1|	-	0.29	11.2	1.0	2.2	8.3	0.2	2.3	2	1	1	3	3	3	0	Helicase	HerA,	central	domain
EMC3_TMCO1	PF01956.16	gi|564288879|ref|YP_008875101.1|	-	3.1e-46	157.2	0.5	3.8e-46	156.9	0.5	1.1	1	0	0	1	1	1	1	Integral	membrane	protein	EMC3/TMCO1-like
60KD_IMP	PF02096.20	gi|564288879|ref|YP_008875101.1|	-	3.3e-05	23.9	0.1	5.6e-05	23.1	0.1	1.4	1	0	0	1	1	1	1	60Kd	inner	membrane	protein
Phage_Gp23	PF10669.9	gi|564288879|ref|YP_008875101.1|	-	0.013	15.8	0.2	0.021	15.2	0.2	1.2	1	0	0	1	1	1	0	Protein	gp23	(Bacteriophage	A118)
SPT6_acidic	PF14632.6	gi|564288879|ref|YP_008875101.1|	-	0.03	14.9	4.2	0.03	14.9	4.2	2.3	2	0	0	2	2	2	0	Acidic	N-terminal	SPT6
DUF2897	PF11446.8	gi|564288879|ref|YP_008875101.1|	-	0.27	11.1	0.8	0.91	9.5	0.8	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2897)
ADK	PF00406.22	gi|564288880|ref|YP_008875102.1|	-	3.8e-42	143.9	0.0	5.1e-42	143.5	0.0	1.1	1	0	0	1	1	1	1	Adenylate	kinase
AAA_17	PF13207.6	gi|564288880|ref|YP_008875102.1|	-	3.4e-23	82.6	0.2	1.5e-22	80.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
ADK_lid	PF05191.14	gi|564288880|ref|YP_008875102.1|	-	2.3e-16	59.5	4.8	4.1e-16	58.7	4.8	1.4	1	0	0	1	1	1	1	Adenylate	kinase,	active	site	lid
AAA_18	PF13238.6	gi|564288880|ref|YP_008875102.1|	-	8.5e-09	36.0	0.0	1.6e-08	35.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564288880|ref|YP_008875102.1|	-	8.7e-07	29.2	0.0	1.6e-06	28.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RuvB_N	PF05496.12	gi|564288880|ref|YP_008875102.1|	-	0.0034	17.1	0.0	0.0066	16.2	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Cytidylate_kin	PF02224.18	gi|564288880|ref|YP_008875102.1|	-	0.016	14.9	0.0	0.026	14.3	0.0	1.4	1	0	0	1	1	1	0	Cytidylate	kinase
Ploopntkinase3	PF18751.1	gi|564288880|ref|YP_008875102.1|	-	0.032	14.2	0.0	0.092	12.6	0.0	1.8	2	0	0	2	2	2	0	P-loop	Nucleotide	Kinase3
zf-IS66	PF13005.7	gi|564288880|ref|YP_008875102.1|	-	0.037	14.4	0.2	1.5	9.3	0.0	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.12	gi|564288880|ref|YP_008875102.1|	-	0.047	13.2	3.9	0.11	12.0	3.9	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
AAA_28	PF13521.6	gi|564288880|ref|YP_008875102.1|	-	0.051	13.8	0.0	0.15	12.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|564288880|ref|YP_008875102.1|	-	0.061	13.0	0.0	0.19	11.4	0.0	1.8	1	1	1	2	2	2	0	AAA	domain
Zn-ribbon_8	PF09723.10	gi|564288880|ref|YP_008875102.1|	-	0.096	12.8	1.2	0.17	12.0	1.2	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|564288880|ref|YP_008875102.1|	-	0.1	12.6	0.8	0.23	11.5	0.8	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF1451	PF07295.11	gi|564288880|ref|YP_008875102.1|	-	0.11	12.5	1.3	0.15	12.1	0.4	1.6	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
HypA	PF01155.19	gi|564288880|ref|YP_008875102.1|	-	0.14	12.2	0.0	0.19	11.8	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
SRP54	PF00448.22	gi|564288880|ref|YP_008875102.1|	-	0.15	11.7	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
zf-C4_Topoisom	PF01396.19	gi|564288880|ref|YP_008875102.1|	-	0.16	11.8	0.2	1	9.2	0.0	2.0	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Prok-RING_1	PF14446.6	gi|564288880|ref|YP_008875102.1|	-	2	8.4	6.8	0.39	10.7	0.5	2.2	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
AhpC-TSA	PF00578.21	gi|564288881|ref|YP_008875103.1|	-	5.6e-26	90.9	0.0	6.7e-26	90.6	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564288881|ref|YP_008875103.1|	-	3.4e-15	56.0	0.0	4e-15	55.8	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|564288881|ref|YP_008875103.1|	-	3.8e-06	27.0	0.0	4.7e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
BDV_P10	PF06515.11	gi|564288881|ref|YP_008875103.1|	-	0.15	12.1	0.0	0.3	11.2	0.0	1.5	1	0	0	1	1	1	0	Borna	disease	virus	P10	protein
GHMP_kinases_N	PF00288.26	gi|564288882|ref|YP_008875104.1|	-	3.1e-12	46.5	1.6	9.6e-12	45.0	1.1	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|564288882|ref|YP_008875104.1|	-	2.4e-08	34.3	0.0	9.7e-08	32.3	0.0	2.0	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
HisKA_7TM	PF16927.5	gi|564288883|ref|YP_008875105.1|	-	3.2e-38	132.0	14.2	4.4e-38	131.5	14.2	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|564288883|ref|YP_008875105.1|	-	2.8e-13	50.4	0.0	5.7e-13	49.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564288883|ref|YP_008875105.1|	-	8.3e-08	32.2	0.0	2.2e-07	30.9	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_8	PF13188.7	gi|564288883|ref|YP_008875105.1|	-	4.4e-05	23.4	1.3	0.00062	19.7	0.3	3.1	2	1	1	3	3	3	1	PAS	domain
HisKA_4TM	PF16926.5	gi|564288883|ref|YP_008875105.1|	-	9.8e-05	22.0	2.1	0.00014	21.5	0.2	2.2	2	0	0	2	2	2	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_3	PF13589.6	gi|564288883|ref|YP_008875105.1|	-	0.00013	21.8	0.0	0.00031	20.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|564288883|ref|YP_008875105.1|	-	0.00029	21.0	1.3	0.048	13.9	1.3	2.8	1	1	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|564288883|ref|YP_008875105.1|	-	0.0041	17.1	0.1	0.035	14.1	0.0	2.4	1	1	0	2	2	2	1	PAS	fold
DUF1664	PF07889.12	gi|564288883|ref|YP_008875105.1|	-	0.12	12.4	0.0	0.34	10.9	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
HATPase_c_5	PF14501.6	gi|564288883|ref|YP_008875105.1|	-	0.16	11.9	0.0	0.35	10.8	0.0	1.5	1	0	0	1	1	1	0	GHKL	domain
Amino_oxidase	PF01593.24	gi|564288884|ref|YP_008875106.1|	-	5.8e-37	128.0	0.1	6.7e-37	127.8	0.1	1.0	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|564288884|ref|YP_008875106.1|	-	2.8e-14	53.1	0.3	9.2e-14	51.4	0.3	2.0	1	1	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564288884|ref|YP_008875106.1|	-	5.8e-11	42.6	4.9	3e-10	40.2	4.9	1.8	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564288884|ref|YP_008875106.1|	-	2.9e-06	26.7	1.9	0.00014	21.2	0.1	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288884|ref|YP_008875106.1|	-	7.1e-06	25.4	1.7	1.4e-05	24.4	1.7	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.27	gi|564288884|ref|YP_008875106.1|	-	5.2e-05	23.7	0.2	0.004	17.7	0.2	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564288884|ref|YP_008875106.1|	-	0.00022	20.7	0.6	0.00053	19.4	0.1	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|564288884|ref|YP_008875106.1|	-	0.001	18.2	0.1	0.0019	17.3	0.1	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|564288884|ref|YP_008875106.1|	-	0.002	16.9	0.4	0.002	16.9	0.4	1.4	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.17	gi|564288884|ref|YP_008875106.1|	-	0.0029	16.9	0.4	0.022	14.0	0.3	2.2	2	0	0	2	2	2	1	Thi4	family
FMO-like	PF00743.19	gi|564288884|ref|YP_008875106.1|	-	0.0097	14.4	0.0	0.014	13.9	0.0	1.2	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
NAD_binding_9	PF13454.6	gi|564288884|ref|YP_008875106.1|	-	0.011	15.8	1.7	0.14	12.2	0.2	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|564288884|ref|YP_008875106.1|	-	0.014	14.7	1.2	0.066	12.5	0.0	2.1	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|564288884|ref|YP_008875106.1|	-	0.025	14.5	0.0	0.042	13.7	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|564288884|ref|YP_008875106.1|	-	0.042	12.9	0.0	0.068	12.2	0.0	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
FAD_binding_3	PF01494.19	gi|564288884|ref|YP_008875106.1|	-	0.047	12.9	0.6	0.087	12.0	0.6	1.4	1	0	0	1	1	1	0	FAD	binding	domain
F420_oxidored	PF03807.17	gi|564288884|ref|YP_008875106.1|	-	0.062	13.9	0.5	3.1	8.4	0.2	2.6	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox_3	PF13738.6	gi|564288884|ref|YP_008875106.1|	-	0.21	10.8	0.1	0.58	9.4	0.0	1.7	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564288886|ref|YP_008875108.1|	-	2.4e-47	161.6	0.1	2.9e-47	161.3	0.1	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288886|ref|YP_008875108.1|	-	3.6e-11	42.9	0.0	1.4e-10	41.0	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564288886|ref|YP_008875108.1|	-	2.5e-09	37.5	0.3	7.6e-06	26.4	0.1	3.2	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Rubredoxin_C	PF18267.1	gi|564288886|ref|YP_008875108.1|	-	3.4e-08	33.3	0.1	1.1e-06	28.4	0.0	3.1	4	0	0	4	4	4	1	Rubredoxin	NAD+	reductase	C-terminal	domain
HI0933_like	PF03486.14	gi|564288886|ref|YP_008875108.1|	-	0.00028	19.7	0.1	0.074	11.7	0.0	2.6	3	1	1	4	4	4	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|564288886|ref|YP_008875108.1|	-	0.022	15.0	2.7	0.89	9.8	0.0	3.2	4	0	0	4	4	4	0	NAD(P)-binding	Rossmann-like	domain
Reductase_C	PF14759.6	gi|564288886|ref|YP_008875108.1|	-	0.025	15.1	0.0	0.062	13.9	0.0	1.7	1	0	0	1	1	1	0	Reductase	C-terminal
Amino_oxidase	PF01593.24	gi|564288886|ref|YP_008875108.1|	-	0.03	13.6	0.0	0.14	11.4	0.0	1.8	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
DAO	PF01266.24	gi|564288886|ref|YP_008875108.1|	-	0.1	12.2	3.1	6.3	6.3	0.1	3.3	2	1	0	4	4	4	0	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|564288886|ref|YP_008875108.1|	-	0.41	10.6	2.7	12	5.8	0.0	2.9	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FAD_binding_2	PF00890.24	gi|564288886|ref|YP_008875108.1|	-	1.3	8.0	8.8	1.8	7.5	0.1	3.6	3	1	1	4	4	4	0	FAD	binding	domain
GPDPase_memb	PF10110.9	gi|564288889|ref|YP_008875111.1|	-	0.13	11.0	13.1	0.035	12.9	10.2	1.5	2	0	0	2	2	2	0	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
UPF0259	PF06790.11	gi|564288889|ref|YP_008875111.1|	-	0.24	11.1	14.8	0.42	10.4	14.7	1.5	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0259)
DUF1218	PF06749.12	gi|564288889|ref|YP_008875111.1|	-	5.5	7.6	10.3	3.3	8.3	0.1	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1218)
DUF4191	PF13829.6	gi|564288889|ref|YP_008875111.1|	-	5.8	6.2	11.3	8.2	5.7	0.9	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4191)
DUF1129	PF06570.11	gi|564288889|ref|YP_008875111.1|	-	9	5.7	11.6	5.1	6.5	9.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
DUF3253	PF11625.8	gi|564288892|ref|YP_008875114.1|	-	0.073	13.3	0.0	0.1	12.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3253)
DUF4346	PF14251.6	gi|564288892|ref|YP_008875114.1|	-	0.088	12.8	0.0	0.11	12.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4346)
CPSase_L_D2	PF02786.17	gi|564288893|ref|YP_008875115.1|	-	2e-93	311.7	0.1	6.9e-58	195.6	0.0	2.6	2	1	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.19	gi|564288893|ref|YP_008875115.1|	-	4.3e-27	94.9	0.0	9.5e-27	93.8	0.0	1.6	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATP-grasp	PF02222.22	gi|564288893|ref|YP_008875115.1|	-	3.4e-13	49.5	0.0	5.2e-08	32.7	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.6	gi|564288893|ref|YP_008875115.1|	-	3.4e-13	49.5	0.0	2.7e-06	27.2	0.0	2.6	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.13	gi|564288893|ref|YP_008875115.1|	-	3.9e-12	46.2	0.1	6.5e-08	32.3	0.0	2.8	2	0	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
ATP-grasp_3	PF02655.14	gi|564288893|ref|YP_008875115.1|	-	4.1e-09	36.7	0.3	0.00029	20.9	0.0	2.4	2	0	0	2	2	2	2	ATP-grasp	domain
GARS_A	PF01071.19	gi|564288893|ref|YP_008875115.1|	-	0.005	16.6	0.3	0.026	14.3	0.0	2.4	2	1	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.6	gi|564288893|ref|YP_008875115.1|	-	0.014	14.9	0.1	0.9	9.0	0.0	3.3	2	1	1	3	3	3	0	ATP-grasp	domain
B12-binding	PF02310.19	gi|564288893|ref|YP_008875115.1|	-	0.017	15.1	1.2	25	4.9	0.0	4.3	3	0	0	3	3	3	0	B12	binding	domain
PAS_4	PF08448.10	gi|564288894|ref|YP_008875116.1|	-	9.2e-52	173.9	20.0	8e-22	77.6	0.2	5.9	6	0	0	6	6	6	4	PAS	fold
PAS_3	PF08447.12	gi|564288894|ref|YP_008875116.1|	-	2.2e-35	120.8	3.0	4.9e-24	84.4	0.2	5.1	4	1	1	5	5	5	4	PAS	fold
PAS	PF00989.25	gi|564288894|ref|YP_008875116.1|	-	1.4e-25	89.5	3.2	2.2e-09	37.3	0.0	5.1	4	1	0	4	4	4	4	PAS	fold
PAS_9	PF13426.7	gi|564288894|ref|YP_008875116.1|	-	4.4e-24	84.7	1.4	1.5e-07	31.6	0.0	5.1	5	0	0	5	5	5	4	PAS	domain
Response_reg	PF00072.24	gi|564288894|ref|YP_008875116.1|	-	7.9e-21	74.3	0.0	3.3e-20	72.3	0.0	2.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|564288894|ref|YP_008875116.1|	-	6.7e-19	67.5	0.5	0.00061	19.8	0.0	5.0	4	0	0	4	4	4	4	PAS	domain
HATPase_c	PF02518.26	gi|564288894|ref|YP_008875116.1|	-	4.3e-17	62.6	0.1	1.1e-16	61.3	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564288894|ref|YP_008875116.1|	-	1.3e-12	47.5	1.0	7.1e-12	45.2	0.2	2.7	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|564288894|ref|YP_008875116.1|	-	3.8e-11	43.4	3.5	9.4e-11	42.2	1.5	2.8	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|564288894|ref|YP_008875116.1|	-	1.1e-07	32.3	0.2	4.3e-07	30.3	0.2	2.1	1	0	0	1	1	1	1	GAF	domain
PAS_10	PF13596.6	gi|564288894|ref|YP_008875116.1|	-	2.5e-07	31.2	0.0	0.00015	22.3	0.0	3.2	2	0	0	2	2	2	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|564288894|ref|YP_008875116.1|	-	0.00013	22.2	0.0	0.00013	22.2	0.0	2.8	4	0	0	4	4	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
GAF	PF01590.26	gi|564288894|ref|YP_008875116.1|	-	0.001	19.7	0.1	0.0044	17.7	0.1	2.2	1	0	0	1	1	1	1	GAF	domain
Methyltransf_24	PF13578.6	gi|564288894|ref|YP_008875116.1|	-	0.012	16.7	1.7	0.18	12.9	0.0	3.5	3	0	0	3	3	3	0	Methyltransferase	domain
PAS_7	PF12860.7	gi|564288894|ref|YP_008875116.1|	-	0.012	15.7	2.5	0.18	12.0	0.1	4.1	4	2	0	4	4	4	0	PAS	fold
PAS_2	PF08446.11	gi|564288894|ref|YP_008875116.1|	-	0.1	13.3	0.0	3.5	8.3	0.0	3.0	3	0	0	3	3	3	0	PAS	fold
bPH_3	PF14470.6	gi|564288895|ref|YP_008875117.1|	-	0.0097	16.3	0.0	0.013	15.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
GATase	PF00117.28	gi|564288896|ref|YP_008875118.1|	-	2.3e-34	118.9	0.0	3.1e-34	118.4	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
CPSase_sm_chain	PF00988.22	gi|564288896|ref|YP_008875118.1|	-	4.3e-34	117.1	0.0	1.6e-33	115.2	0.0	1.9	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
Peptidase_C26	PF07722.13	gi|564288896|ref|YP_008875118.1|	-	2.6e-05	24.1	0.3	0.036	13.8	0.3	2.3	1	1	1	2	2	2	2	Peptidase	C26
DJ-1_PfpI	PF01965.24	gi|564288896|ref|YP_008875118.1|	-	0.0074	16.1	0.1	0.013	15.3	0.1	1.5	1	0	0	1	1	1	1	DJ-1/PfpI	family
Pro-kuma_activ	PF09286.11	gi|564288896|ref|YP_008875118.1|	-	0.015	15.6	0.0	0.026	14.8	0.0	1.3	1	0	0	1	1	1	0	Pro-kumamolisin,	activation	domain
HTH_AsnC-type	PF13404.6	gi|564288897|ref|YP_008875119.1|	-	9.6e-19	66.9	1.6	1.2e-17	63.5	1.2	2.2	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288897|ref|YP_008875119.1|	-	1e-17	63.4	0.1	2.1e-17	62.4	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|564288897|ref|YP_008875119.1|	-	3.4e-10	39.7	1.0	5.8e-10	39.0	1.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_20	PF12840.7	gi|564288897|ref|YP_008875119.1|	-	6.2e-07	29.4	0.2	1.4e-06	28.3	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288897|ref|YP_008875119.1|	-	4.2e-05	23.3	0.2	0.00012	21.9	0.2	1.7	2	0	0	2	2	2	1	MarR	family
Sigma70_r4_2	PF08281.12	gi|564288897|ref|YP_008875119.1|	-	0.00015	21.3	0.0	0.0003	20.4	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
NapD	PF03927.13	gi|564288897|ref|YP_008875119.1|	-	0.00018	21.5	1.9	0.00033	20.7	1.9	1.4	1	0	0	1	1	1	1	NapD	protein
MarR	PF01047.22	gi|564288897|ref|YP_008875119.1|	-	0.00023	21.0	0.0	0.00042	20.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|564288897|ref|YP_008875119.1|	-	0.00028	20.6	0.0	0.0005	19.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564288897|ref|YP_008875119.1|	-	0.00029	20.3	0.2	0.00049	19.6	0.2	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|564288897|ref|YP_008875119.1|	-	0.00053	19.7	0.0	0.00081	19.1	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|564288897|ref|YP_008875119.1|	-	0.0013	18.7	0.0	0.0021	18.0	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_DeoR	PF08220.12	gi|564288897|ref|YP_008875119.1|	-	0.0017	18.1	0.2	0.003	17.3	0.2	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|564288897|ref|YP_008875119.1|	-	0.003	16.9	1.7	0.0032	16.8	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_27	PF13463.6	gi|564288897|ref|YP_008875119.1|	-	0.0038	17.7	0.1	0.0071	16.8	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|564288897|ref|YP_008875119.1|	-	0.0075	16.1	0.1	0.081	12.8	0.1	2.1	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_38	PF13936.6	gi|564288897|ref|YP_008875119.1|	-	0.0081	15.9	0.2	0.014	15.1	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564288897|ref|YP_008875119.1|	-	0.011	15.7	0.1	0.021	14.8	0.1	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.6	gi|564288897|ref|YP_008875119.1|	-	0.012	15.6	0.1	0.021	14.9	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
HrcA_DNA-bdg	PF03444.15	gi|564288897|ref|YP_008875119.1|	-	0.016	14.8	0.0	0.027	14.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
GntR	PF00392.21	gi|564288897|ref|YP_008875119.1|	-	0.018	14.7	0.1	0.029	14.0	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
DUF746	PF05344.11	gi|564288897|ref|YP_008875119.1|	-	0.02	14.7	0.2	0.081	12.8	0.0	2.0	3	0	0	3	3	2	0	Domain	of	Unknown	Function	(DUF746)
PaaX	PF07848.12	gi|564288897|ref|YP_008875119.1|	-	0.021	15.1	0.1	0.034	14.3	0.1	1.4	1	0	0	1	1	1	0	PaaX-like	protein
HTH_28	PF13518.6	gi|564288897|ref|YP_008875119.1|	-	0.03	14.4	0.0	0.063	13.4	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288897|ref|YP_008875119.1|	-	0.059	13.3	0.0	0.096	12.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FaeA	PF04703.12	gi|564288897|ref|YP_008875119.1|	-	0.072	13.5	0.1	0.18	12.2	0.0	1.7	2	0	0	2	2	1	0	FaeA-like	protein
HTH_Mga	PF08280.11	gi|564288897|ref|YP_008875119.1|	-	0.076	13.0	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
LexA_DNA_bind	PF01726.16	gi|564288897|ref|YP_008875119.1|	-	0.11	12.3	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	LexA	DNA	binding	domain
MIase	PF02426.16	gi|564288897|ref|YP_008875119.1|	-	0.14	12.3	0.3	1	9.5	0.2	2.1	1	1	1	2	2	2	0	Muconolactone	delta-isomerase
MS_channel	PF00924.18	gi|564288898|ref|YP_008875120.1|	-	1.2e-37	129.4	0.5	1.6e-37	129.1	0.5	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
YesK	PF14150.6	gi|564288898|ref|YP_008875120.1|	-	0.002	18.2	2.0	0.0037	17.4	2.0	1.4	1	0	0	1	1	1	1	YesK-like	protein
ABC_export	PF16962.5	gi|564288898|ref|YP_008875120.1|	-	4.8	5.5	7.1	6.4	5.1	7.1	1.1	1	0	0	1	1	1	0	Putative	ABC	exporter
AI-2E_transport	PF01594.16	gi|564288899|ref|YP_008875121.1|	-	2.8e-23	82.6	30.5	3.7e-23	82.2	30.5	1.1	1	0	0	1	1	1	1	AI-2E	family	transporter
HATPase_c	PF02518.26	gi|564288900|ref|YP_008875123.1|	-	4.4e-18	65.8	0.0	1.2e-17	64.4	0.0	1.7	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564288900|ref|YP_008875123.1|	-	5.9e-10	39.2	0.2	1.5e-09	37.8	0.2	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
SPOB_a	PF14689.6	gi|564288900|ref|YP_008875123.1|	-	0.00017	21.2	1.2	0.0004	20.0	1.2	1.6	1	0	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA_4TM	PF16926.5	gi|564288900|ref|YP_008875123.1|	-	0.00049	19.7	0.1	0.00087	18.9	0.1	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_5	PF14501.6	gi|564288900|ref|YP_008875123.1|	-	0.0013	18.6	0.0	0.0028	17.5	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|564288900|ref|YP_008875123.1|	-	0.026	14.6	0.9	0.075	13.1	0.3	2.1	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
DEAD	PF00270.29	gi|564288901|ref|YP_008875124.1|	-	2e-22	79.8	0.0	2.9e-22	79.3	0.0	1.2	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF1998	PF09369.10	gi|564288901|ref|YP_008875124.1|	-	1e-19	71.1	0.0	3.9e-19	69.2	0.0	2.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
Helicase_C	PF00271.31	gi|564288901|ref|YP_008875124.1|	-	3.2e-07	30.7	0.0	1.9e-06	28.2	0.0	2.1	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ABC_tran	PF00005.27	gi|564288902|ref|YP_008875125.1|	-	3.9e-31	108.4	0.0	3.8e-30	105.2	0.0	2.0	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.6	gi|564288902|ref|YP_008875125.1|	-	8.5e-07	29.1	0.3	0.002	18.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288902|ref|YP_008875125.1|	-	3.2e-05	23.5	0.1	0.0012	18.3	0.1	2.6	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|564288902|ref|YP_008875125.1|	-	0.00056	19.9	0.0	0.52	10.2	0.0	2.2	2	0	0	2	2	2	2	RsgA	GTPase
AAA_23	PF13476.6	gi|564288902|ref|YP_008875125.1|	-	0.00063	20.3	0.0	0.0022	18.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|564288902|ref|YP_008875125.1|	-	0.00084	19.0	0.2	0.09	12.5	0.1	2.4	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|564288902|ref|YP_008875125.1|	-	0.0015	17.8	0.1	0.01	15.1	0.0	2.1	2	0	0	2	2	2	1	Zeta	toxin
AAA_16	PF13191.6	gi|564288902|ref|YP_008875125.1|	-	0.0024	18.3	2.2	0.015	15.7	1.5	2.6	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564288902|ref|YP_008875125.1|	-	0.0025	18.0	0.2	0.06	13.5	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.6	gi|564288902|ref|YP_008875125.1|	-	0.0035	17.6	0.9	0.02	15.1	0.5	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|564288902|ref|YP_008875125.1|	-	0.021	14.6	0.0	0.021	14.6	0.0	2.5	2	1	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|564288902|ref|YP_008875125.1|	-	0.038	14.4	0.0	0.097	13.1	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_7	PF12775.7	gi|564288902|ref|YP_008875125.1|	-	0.067	12.7	0.0	1.4	8.4	0.0	2.5	3	0	0	3	3	3	0	P-loop	containing	dynein	motor	region
AAA_24	PF13479.6	gi|564288902|ref|YP_008875125.1|	-	0.082	12.6	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|564288902|ref|YP_008875125.1|	-	0.092	12.3	0.0	0.19	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|564288902|ref|YP_008875125.1|	-	0.17	11.7	0.2	0.72	9.6	0.0	1.9	2	0	0	2	2	2	0	MukB	N-terminal
NAD_binding_7	PF13241.6	gi|564288902|ref|YP_008875125.1|	-	2.4	8.7	8.5	2.7	8.5	3.7	2.9	2	2	2	4	4	4	0	Putative	NAD(P)-binding
FecCD	PF01032.18	gi|564288903|ref|YP_008875126.1|	-	9e-89	297.5	32.5	1.1e-88	297.2	32.1	1.4	1	1	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|564288903|ref|YP_008875126.1|	-	1.5e-06	27.9	13.8	1.5e-06	27.9	13.8	1.8	1	1	0	1	1	1	1	ABC	3	transport	family
PhrC_PhrF	PF11131.8	gi|564288903|ref|YP_008875126.1|	-	2.3	7.9	7.5	2.2	7.9	2.5	2.8	2	0	0	2	2	2	0	Rap-phr	extracellular	signalling
Peripla_BP_2	PF01497.18	gi|564288904|ref|YP_008875127.1|	-	4.2e-23	82.2	0.7	5.8e-23	81.7	0.7	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
5-FTHF_cyc-lig	PF01812.20	gi|564288905|ref|YP_008875128.1|	-	5.9e-30	104.5	0.0	8.5e-30	104.0	0.0	1.2	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
HATPase_c	PF02518.26	gi|564288906|ref|YP_008875129.1|	-	1.4e-17	64.2	1.3	2.3e-17	63.5	0.4	1.8	2	0	0	2	2	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|564288906|ref|YP_008875129.1|	-	6.4e-15	55.3	0.2	1.9e-14	53.8	0.0	1.9	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|564288906|ref|YP_008875129.1|	-	2.8e-12	46.5	0.8	1.5e-11	44.1	0.2	2.5	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|564288906|ref|YP_008875129.1|	-	3.5e-11	43.3	0.4	2.1e-10	40.8	0.0	2.6	2	0	0	2	2	2	1	PAS	fold
GAF	PF01590.26	gi|564288906|ref|YP_008875129.1|	-	8.7e-10	39.3	0.0	2.4e-09	37.9	0.0	1.7	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|564288906|ref|YP_008875129.1|	-	5.4e-08	33.2	0.4	3.5e-07	30.6	0.0	2.5	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|564288906|ref|YP_008875129.1|	-	3.5e-06	27.4	0.0	9.9e-06	25.9	0.0	1.8	2	0	0	2	2	1	1	GAF	domain
PAS_9	PF13426.7	gi|564288906|ref|YP_008875129.1|	-	0.00043	20.5	0.0	0.0061	16.8	0.0	2.7	2	0	0	2	2	2	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564288906|ref|YP_008875129.1|	-	0.00073	19.5	0.9	0.0038	17.2	0.2	2.5	3	0	0	3	3	3	1	Histidine	kinase-like	ATPase	domain
OKR_DC_1_N	PF03709.15	gi|564288906|ref|YP_008875129.1|	-	0.0019	18.5	0.1	0.0048	17.1	0.1	1.7	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS	PF00989.25	gi|564288906|ref|YP_008875129.1|	-	0.089	12.8	0.1	0.44	10.6	0.0	2.2	2	0	0	2	2	2	0	PAS	fold
PAS_8	PF13188.7	gi|564288906|ref|YP_008875129.1|	-	0.15	12.1	0.3	0.54	10.3	0.0	2.1	2	0	0	2	2	2	0	PAS	domain
Pyr_redox_2	PF07992.14	gi|564288907|ref|YP_008875130.1|	-	6.2e-40	137.3	0.6	1e-39	136.5	0.6	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|564288907|ref|YP_008875130.1|	-	7.9e-15	55.1	0.0	2.5e-14	53.5	0.0	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.27	gi|564288907|ref|YP_008875130.1|	-	1e-07	32.4	2.0	2.6e-07	31.1	0.0	2.5	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Sacchrp_dh_NADP	PF03435.18	gi|564288907|ref|YP_008875130.1|	-	4.4e-05	23.7	0.1	0.23	11.7	0.1	2.5	2	0	0	2	2	2	2	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_9	PF13454.6	gi|564288907|ref|YP_008875130.1|	-	0.00015	21.8	0.1	0.28	11.1	0.0	3.2	2	1	1	3	3	3	2	FAD-NAD(P)-binding
TrkA_N	PF02254.18	gi|564288907|ref|YP_008875130.1|	-	0.00018	21.7	1.1	0.034	14.4	0.0	3.2	3	0	0	3	3	3	1	TrkA-N	domain
Pyr_redox_3	PF13738.6	gi|564288907|ref|YP_008875130.1|	-	0.0019	17.5	0.3	0.023	13.9	0.0	2.3	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|564288907|ref|YP_008875130.1|	-	0.0045	16.2	0.1	3.3	6.7	0.0	2.6	3	0	0	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
GIDA	PF01134.22	gi|564288907|ref|YP_008875130.1|	-	0.012	14.8	1.7	0.18	10.8	0.0	2.4	2	1	0	2	2	2	0	Glucose	inhibited	division	protein	A
UDPG_MGDP_dh_N	PF03721.14	gi|564288907|ref|YP_008875130.1|	-	0.11	12.0	0.0	0.23	11.0	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DAO	PF01266.24	gi|564288907|ref|YP_008875130.1|	-	2	7.9	6.4	14	5.2	0.1	2.7	2	1	0	3	3	3	0	FAD	dependent	oxidoreductase
MMPL	PF03176.15	gi|564288908|ref|YP_008875131.1|	-	3.2e-26	92.0	25.4	7.1e-15	54.8	1.5	2.7	3	0	0	3	3	3	2	MMPL	family
Patched	PF02460.18	gi|564288908|ref|YP_008875131.1|	-	5.3e-16	57.9	20.1	5.3e-10	38.1	8.3	2.1	2	0	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|564288908|ref|YP_008875131.1|	-	1.5e-12	47.6	9.3	2.8e-06	27.2	2.3	2.7	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
SecD_SecF	PF02355.16	gi|564288908|ref|YP_008875131.1|	-	8.7e-06	25.2	20.1	0.0025	17.2	6.5	2.4	2	0	0	2	2	2	2	Protein	export	membrane	protein
SPATA3	PF15662.5	gi|564288908|ref|YP_008875131.1|	-	0.025	15.2	1.2	0.043	14.5	1.2	1.3	1	0	0	1	1	1	0	Spermatogenesis-associated	protein	3	family
CARDB	PF07705.11	gi|564288909|ref|YP_008875132.1|	-	7.4e-17	61.5	33.3	0.0039	17.4	0.4	6.5	5	2	1	6	6	6	5	CARDB
DUF11	PF01345.18	gi|564288909|ref|YP_008875132.1|	-	1.3e-11	44.7	44.3	5.4e-05	23.4	5.1	6.7	6	2	0	6	6	6	3	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|564288909|ref|YP_008875132.1|	-	2.9e-11	43.5	28.5	0.0012	19.1	0.3	8.2	5	2	2	7	7	7	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
PHTB1_C	PF14728.6	gi|564288909|ref|YP_008875132.1|	-	1.2e-09	37.8	0.2	0.0015	17.7	0.0	3.9	4	0	0	4	4	4	2	PTHB1	C-terminus
ASH	PF15780.5	gi|564288909|ref|YP_008875132.1|	-	4.6e-07	30.0	10.5	3.6	7.9	0.0	6.3	6	1	0	6	6	6	3	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Transglut_C	PF00927.22	gi|564288909|ref|YP_008875132.1|	-	2.2e-06	27.8	0.1	0.46	10.7	0.0	4.4	4	0	0	4	4	4	1	Transglutaminase	family,	C-terminal	ig	like	domain
Fn3-like	PF14310.6	gi|564288909|ref|YP_008875132.1|	-	8.3e-05	22.6	7.4	1	9.5	0.0	6.9	8	0	0	8	8	8	1	Fibronectin	type	III-like	domain
Ig_GlcNase	PF18368.1	gi|564288909|ref|YP_008875132.1|	-	0.00022	21.3	5.4	1.1	9.4	0.0	5.5	5	2	0	5	5	5	1	Exo-beta-D-glucosaminidase	Ig-fold	domain
AP3B1_C	PF14796.6	gi|564288909|ref|YP_008875132.1|	-	0.011	15.9	0.3	2.1	8.6	0.0	3.2	3	0	0	3	3	3	0	Clathrin-adaptor	complex-3	beta-1	subunit	C-terminal
N_BRCA1_IG	PF16158.5	gi|564288909|ref|YP_008875132.1|	-	0.019	15.7	3.9	6.3	7.6	0.1	4.1	4	1	1	5	5	5	0	Ig-like	domain	from	next	to	BRCA1	gene
Regulator_TrmB	PF11495.8	gi|564288909|ref|YP_008875132.1|	-	0.035	13.3	5.0	0.15	11.3	0.5	3.2	3	0	0	3	3	3	0	Archaeal	transcriptional	regulator	TrmB
DUF2393	PF09624.10	gi|564288909|ref|YP_008875132.1|	-	0.11	12.4	0.0	6.8	6.7	0.0	3.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2393)
TetR_N	PF00440.23	gi|564288910|ref|YP_008875133.1|	-	7.6e-15	54.4	0.2	1.3e-14	53.6	0.2	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.6	gi|564288910|ref|YP_008875133.1|	-	5.4e-13	49.2	0.0	1e-12	48.2	0.0	1.5	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_24	PF17932.1	gi|564288910|ref|YP_008875133.1|	-	1.9e-05	24.9	0.1	4.4e-05	23.7	0.0	1.6	2	0	0	2	2	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|564288910|ref|YP_008875133.1|	-	0.0001	22.3	0.0	0.00021	21.4	0.0	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|564288910|ref|YP_008875133.1|	-	0.00012	22.3	0.0	0.00028	21.1	0.0	1.7	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564288910|ref|YP_008875133.1|	-	0.0008	19.4	0.1	0.0026	17.8	0.0	1.9	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|564288910|ref|YP_008875133.1|	-	0.016	15.9	0.0	0.032	14.8	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_23	PF13384.6	gi|564288910|ref|YP_008875133.1|	-	0.021	14.6	0.1	0.065	13.0	0.0	1.8	3	0	0	3	3	2	0	Homeodomain-like	domain
UPF0122	PF04297.14	gi|564288910|ref|YP_008875133.1|	-	0.024	14.9	0.0	0.045	14.0	0.0	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_40	PF14493.6	gi|564288910|ref|YP_008875133.1|	-	0.029	14.8	0.0	0.084	13.3	0.0	1.9	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|564288910|ref|YP_008875133.1|	-	0.035	14.2	0.0	0.077	13.1	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Mga	PF05043.13	gi|564288910|ref|YP_008875133.1|	-	0.08	13.5	0.0	0.13	12.8	0.0	1.4	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564288910|ref|YP_008875133.1|	-	0.12	12.5	0.0	0.22	11.6	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
TetR_C_4	PF08359.11	gi|564288910|ref|YP_008875133.1|	-	0.12	12.6	0.0	0.16	12.2	0.0	1.3	1	0	0	1	1	1	0	YsiA-like	protein,	C-terminal	region
HTH_psq	PF05225.16	gi|564288910|ref|YP_008875133.1|	-	0.18	11.6	0.0	0.28	10.9	0.0	1.4	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
TetR_C_5	PF08360.11	gi|564288910|ref|YP_008875133.1|	-	0.18	12.0	0.1	0.38	10.9	0.0	1.5	2	0	0	2	2	2	0	QacR-like	protein,	C-terminal	region
Response_reg	PF00072.24	gi|564288911|ref|YP_008875134.1|	-	6.7e-16	58.4	0.2	1.1e-15	57.8	0.2	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|564288911|ref|YP_008875134.1|	-	8.3e-14	51.7	8.7	2.4e-13	50.2	8.7	1.9	1	0	0	1	1	1	1	HalX	domain
DUF2721	PF11026.8	gi|564288912|ref|YP_008875135.1|	-	0.24	11.3	1.1	0.37	10.7	1.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2721)
DUF3098	PF11297.8	gi|564288913|ref|YP_008875136.1|	-	0.0056	16.2	0.5	0.38	10.4	0.1	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3098)
DUF2065	PF09838.9	gi|564288913|ref|YP_008875136.1|	-	0.012	15.6	4.2	0.052	13.6	1.4	2.3	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
NAD_kinase	PF01513.21	gi|564288914|ref|YP_008875137.1|	-	1.8e-38	132.4	0.3	2.5e-38	131.9	0.3	1.2	1	0	0	1	1	1	1	ATP-NAD	kinase
SCP_3	PF17844.1	gi|564288914|ref|YP_008875137.1|	-	0.015	15.1	0.3	0.1	12.4	0.1	2.3	2	0	0	2	2	2	0	Bacterial	SCP	ortholog
ATPase	PF06745.13	gi|564288915|ref|YP_008875138.1|	-	1.3e-55	188.3	0.1	1.6e-55	188.0	0.1	1.1	1	0	0	1	1	1	1	KaiC
DnaB_C	PF03796.15	gi|564288915|ref|YP_008875138.1|	-	2.9e-06	26.8	0.0	0.0013	18.2	0.0	2.3	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.6	gi|564288915|ref|YP_008875138.1|	-	3.4e-06	26.8	0.0	5.2e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.11	gi|564288915|ref|YP_008875138.1|	-	4.1e-05	22.4	0.1	0.00011	21.0	0.1	1.6	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_24	PF13479.6	gi|564288915|ref|YP_008875138.1|	-	4.5e-05	23.3	0.0	0.0001	22.1	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
MEDS	PF14417.6	gi|564288915|ref|YP_008875138.1|	-	0.00012	22.0	0.0	0.00021	21.2	0.0	1.3	1	0	0	1	1	1	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
RecA	PF00154.21	gi|564288915|ref|YP_008875138.1|	-	0.00094	18.7	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
Rad51	PF08423.11	gi|564288915|ref|YP_008875138.1|	-	0.013	14.8	0.1	0.026	13.8	0.1	1.4	1	0	0	1	1	1	0	Rad51
AAA_33	PF13671.6	gi|564288915|ref|YP_008875138.1|	-	0.059	13.5	0.1	0.12	12.5	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|564288915|ref|YP_008875138.1|	-	0.09	12.8	0.0	0.17	11.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|564288915|ref|YP_008875138.1|	-	0.14	11.6	0.0	0.25	10.8	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
IstB_IS21	PF01695.17	gi|564288915|ref|YP_008875138.1|	-	0.14	11.8	0.0	0.25	11.1	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
DUF4013	PF13197.6	gi|564288916|ref|YP_008875139.1|	-	2e-37	128.6	17.6	2e-37	128.6	17.6	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF4013)
Usp	PF00582.26	gi|564288917|ref|YP_008875140.1|	-	1.4e-10	41.9	0.2	2e-10	41.3	0.2	1.3	1	0	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.21	gi|564288917|ref|YP_008875140.1|	-	0.0021	17.9	0.0	1.7	8.5	0.0	2.1	2	0	0	2	2	2	2	Electron	transfer	flavoprotein	domain
Usp	PF00582.26	gi|564288918|ref|YP_008875141.1|	-	1.1e-35	123.1	2.9	1.3e-35	123.0	2.9	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF87	PF01935.17	gi|564288919|ref|YP_008875142.1|	-	2.5e-07	31.0	0.0	5.2e-07	30.0	0.0	1.5	1	1	0	1	1	1	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|564288919|ref|YP_008875142.1|	-	4e-07	29.0	0.2	0.0005	18.8	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_10	PF12846.7	gi|564288919|ref|YP_008875142.1|	-	0.00041	19.4	0.0	0.0092	14.9	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.6	gi|564288919|ref|YP_008875142.1|	-	0.03	14.6	0.0	0.13	12.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.15	gi|564288919|ref|YP_008875142.1|	-	0.038	14.0	0.0	9.3	6.2	0.0	2.2	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
TrwB_AAD_bind	PF10412.9	gi|564288919|ref|YP_008875142.1|	-	0.04	12.8	0.0	0.062	12.2	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|564288919|ref|YP_008875142.1|	-	0.15	11.4	0.0	0.47	9.8	0.0	1.8	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DUF4258	PF14076.6	gi|564288919|ref|YP_008875142.1|	-	0.23	11.9	0.7	0.93	9.9	0.7	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4258)
Exo_endo_phos	PF03372.23	gi|564288920|ref|YP_008875143.1|	-	2.4e-13	50.2	4.3	3.2e-13	49.8	4.3	1.2	1	0	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.6	gi|564288920|ref|YP_008875143.1|	-	3.4e-06	26.9	0.0	5.2e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Endonuclease-reverse	transcriptase
HTH_20	PF12840.7	gi|564288922|ref|YP_008875145.1|	-	3.9e-10	39.6	0.6	6.4e-10	38.9	0.6	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288922|ref|YP_008875145.1|	-	6.7e-08	32.2	0.2	4e-07	29.7	0.1	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|564288922|ref|YP_008875145.1|	-	1.2e-06	28.3	0.0	1.6e-06	27.9	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|564288922|ref|YP_008875145.1|	-	1.7e-06	27.7	0.0	3e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564288922|ref|YP_008875145.1|	-	6.8e-06	25.9	0.1	1.1e-05	25.2	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564288922|ref|YP_008875145.1|	-	1.2e-05	24.7	0.0	1.8e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FUR	PF01475.19	gi|564288922|ref|YP_008875145.1|	-	1.9e-05	24.8	0.0	2.3e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
MarR	PF01047.22	gi|564288922|ref|YP_008875145.1|	-	0.00022	21.1	0.0	0.00034	20.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564288922|ref|YP_008875145.1|	-	0.00029	20.7	0.0	0.00045	20.1	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
PadR	PF03551.14	gi|564288922|ref|YP_008875145.1|	-	0.0016	18.4	0.0	0.0027	17.6	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DprA_WH	PF17782.1	gi|564288922|ref|YP_008875145.1|	-	0.0033	17.5	0.3	0.0054	16.8	0.3	1.4	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_Crp_2	PF13545.6	gi|564288922|ref|YP_008875145.1|	-	0.0082	16.1	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564288922|ref|YP_008875145.1|	-	0.027	14.3	0.1	0.053	13.4	0.1	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
B-block_TFIIIC	PF04182.12	gi|564288922|ref|YP_008875145.1|	-	0.041	14.0	0.0	0.046	13.9	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Ntox5	PF15543.6	gi|564288922|ref|YP_008875145.1|	-	0.072	12.9	0.0	7.2	6.5	0.0	2.0	1	1	1	2	2	2	0	Bacterial	toxin	5
RP-C	PF03428.13	gi|564288922|ref|YP_008875145.1|	-	0.082	12.6	0.0	0.12	12.1	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
MerC	PF03203.14	gi|564288923|ref|YP_008875146.1|	-	0.028	14.9	6.5	0.038	14.4	6.5	1.3	1	1	0	1	1	1	0	MerC	mercury	resistance	protein
MrpF_PhaF	PF04066.13	gi|564288923|ref|YP_008875146.1|	-	0.057	13.8	2.2	0.057	13.8	2.2	2.1	2	0	0	2	2	2	0	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF2070	PF09843.9	gi|564288923|ref|YP_008875146.1|	-	1.7	6.8	5.1	2	6.6	5.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
FeoB_associated	PF12669.7	gi|564288923|ref|YP_008875146.1|	-	2.6	8.5	4.5	23	5.5	0.3	2.5	2	1	1	3	3	3	0	FeoB-associated	Cys-rich	membrane	protein
NurA	PF09376.10	gi|564288924|ref|YP_008875147.1|	-	7.4e-18	65.1	0.0	1e-17	64.7	0.0	1.2	1	0	0	1	1	1	1	NurA	domain
iPGM_N	PF06415.13	gi|564288925|ref|YP_008875148.1|	-	6.9e-78	261.0	0.6	9.6e-78	260.5	0.6	1.2	1	0	0	1	1	1	1	BPG-independent	PGAM	N-terminus	(iPGM_N)
Metalloenzyme	PF01676.18	gi|564288925|ref|YP_008875148.1|	-	3.6e-71	239.4	0.3	4.1e-71	239.2	0.3	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.22	gi|564288925|ref|YP_008875148.1|	-	0.00072	19.2	1.0	0.0014	18.3	0.1	1.9	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|564288925|ref|YP_008875148.1|	-	0.025	14.0	0.2	0.073	12.4	0.2	2.0	1	1	0	1	1	1	0	Sulfatase
CobD_Cbib	PF03186.13	gi|564288925|ref|YP_008875148.1|	-	0.08	12.1	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	CobD/Cbib	protein
PTS_2-RNA	PF01885.16	gi|564288926|ref|YP_008875149.1|	-	3.4e-25	89.2	0.0	4e-25	88.9	0.0	1.0	1	0	0	1	1	1	1	RNA	2'-phosphotransferase,	Tpt1	/	KptA	family
Acetyltransf_1	PF00583.25	gi|564288927|ref|YP_008875150.1|	-	2.7e-12	47.0	0.0	4.6e-12	46.2	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564288927|ref|YP_008875150.1|	-	1.2e-06	28.9	0.0	2.3e-06	28.0	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564288927|ref|YP_008875150.1|	-	1.9e-06	28.1	0.0	2.3e-06	27.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
HTH_20	PF12840.7	gi|564288927|ref|YP_008875150.1|	-	0.001	19.1	0.0	0.0024	17.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Acetyltransf_6	PF13480.7	gi|564288927|ref|YP_008875150.1|	-	0.0022	18.1	1.1	0.0063	16.7	0.6	1.9	1	1	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564288927|ref|YP_008875150.1|	-	0.0071	16.3	0.0	0.011	15.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564288927|ref|YP_008875150.1|	-	0.015	16.0	0.1	0.023	15.4	0.1	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564288927|ref|YP_008875150.1|	-	0.12	12.5	0.0	0.96	9.6	0.0	2.3	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
Pyridox_ox_2	PF12900.7	gi|564288928|ref|YP_008875151.1|	-	1.6e-21	76.8	0.1	1.9e-21	76.6	0.1	1.1	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288928|ref|YP_008875151.1|	-	0.0047	17.1	0.0	0.0063	16.7	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
QRPTase_C	PF01729.19	gi|564288929|ref|YP_008875152.1|	-	1.4e-56	190.9	0.8	1.8e-56	190.5	0.8	1.1	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|564288929|ref|YP_008875152.1|	-	6.5e-21	74.2	0.0	1.2e-20	73.4	0.0	1.4	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
FAD_binding_2	PF00890.24	gi|564288930|ref|YP_008875153.1|	-	3.3e-81	273.5	4.3	4e-81	273.2	4.3	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288930|ref|YP_008875153.1|	-	9e-12	44.8	0.1	1e-06	28.2	0.1	2.9	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|564288930|ref|YP_008875153.1|	-	1e-11	45.0	1.8	1.4e-10	41.4	0.3	2.7	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|564288930|ref|YP_008875153.1|	-	6.1e-07	29.1	4.9	1.9e-06	27.5	4.2	1.8	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|564288930|ref|YP_008875153.1|	-	9.7e-07	28.2	0.2	0.00011	21.5	0.5	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Succ_DH_flav_C	PF02910.20	gi|564288930|ref|YP_008875153.1|	-	1.5e-05	25.0	0.2	3.6e-05	23.8	0.2	1.6	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
NAD_binding_8	PF13450.6	gi|564288930|ref|YP_008875153.1|	-	0.00032	20.9	0.5	0.00074	19.7	0.5	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|564288930|ref|YP_008875153.1|	-	0.00088	18.1	0.2	0.0084	14.8	0.3	2.0	2	0	0	2	2	2	1	HI0933-like	protein
DUF2398	PF09661.10	gi|564288930|ref|YP_008875153.1|	-	0.0035	16.6	0.3	0.018	14.3	0.2	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2398)
AlaDh_PNT_C	PF01262.21	gi|564288930|ref|YP_008875153.1|	-	0.0061	15.9	0.1	0.011	15.0	0.1	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|564288930|ref|YP_008875153.1|	-	0.012	14.8	0.1	0.024	13.9	0.1	1.4	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox	PF00070.27	gi|564288930|ref|YP_008875153.1|	-	0.018	15.6	0.2	0.089	13.4	0.1	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|564288930|ref|YP_008875153.1|	-	0.02	14.1	0.1	0.035	13.3	0.1	1.4	1	0	0	1	1	1	0	Thi4	family
DXP_reductoisom	PF02670.16	gi|564288930|ref|YP_008875153.1|	-	0.11	13.2	0.2	0.32	11.7	0.2	1.7	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
NadA	PF02445.16	gi|564288931|ref|YP_008875154.1|	-	1.4e-102	342.9	0.0	1.6e-102	342.7	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
Thioredox_DsbH	PF03190.15	gi|564288931|ref|YP_008875154.1|	-	0.1	12.5	0.1	0.21	11.5	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF255
Arteri_nsp7a	PF16749.5	gi|564288931|ref|YP_008875154.1|	-	0.25	11.5	0.8	78	3.5	0.1	3.6	3	1	1	4	4	4	0	Arterivirus	nonstructural	protein	7	alpha
Amidohydro_3	PF07969.11	gi|564288932|ref|YP_008875155.1|	-	2e-79	268.3	15.1	2.3e-79	268.1	15.1	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|564288932|ref|YP_008875155.1|	-	8.2e-15	54.9	0.3	5.3e-10	39.1	0.1	3.2	2	1	0	2	2	2	2	Amidohydrolase	family
HMG-CoA_red	PF00368.18	gi|564288933|ref|YP_008875156.1|	-	4.7e-128	427.3	8.0	5.3e-128	427.1	8.0	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
LPD22	PF18834.1	gi|564288933|ref|YP_008875156.1|	-	0.1	12.8	1.0	0.21	11.8	0.2	1.9	2	0	0	2	2	2	0	Large	polyvalent	protein	associated	domain	22
7TMR-DISM_7TM	PF07695.11	gi|564288934|ref|YP_008875157.1|	-	0.013	15.4	5.9	0.015	15.2	5.9	1.2	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
Promethin	PF16015.5	gi|564288934|ref|YP_008875157.1|	-	0.78	9.7	18.3	0.046	13.7	12.5	1.7	1	1	1	2	2	2	0	Promethin
DUF3784	PF12650.7	gi|564288934|ref|YP_008875157.1|	-	2.4	8.4	7.4	7.9	6.8	1.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3784)
zf-UDP	PF14569.6	gi|564288935|ref|YP_008875158.1|	-	0.018	15.1	1.2	0.034	14.3	1.2	1.5	1	0	0	1	1	1	0	Zinc-binding	RING-finger
DUF1922	PF09082.10	gi|564288935|ref|YP_008875158.1|	-	0.083	13.2	0.4	0.16	12.3	0.4	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1922)
DUF4776	PF16003.5	gi|564288935|ref|YP_008875158.1|	-	0.089	11.8	0.2	0.09	11.8	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4776)
Rrf2	PF02082.20	gi|564288935|ref|YP_008875158.1|	-	0.13	12.6	0.0	0.23	11.9	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HypA	PF01155.19	gi|564288935|ref|YP_008875158.1|	-	0.17	11.9	0.9	0.28	11.2	0.9	1.4	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Cupin_2	PF07883.11	gi|564288936|ref|YP_008875159.1|	-	2.7e-22	78.2	3.8	3.9e-22	77.7	3.8	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|564288936|ref|YP_008875159.1|	-	9.4e-13	48.2	0.9	1.3e-12	47.8	0.9	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|564288936|ref|YP_008875159.1|	-	2.1e-07	30.6	0.2	2.7e-07	30.3	0.2	1.1	1	0	0	1	1	1	1	Cupin
CENP-C_C	PF11699.8	gi|564288936|ref|YP_008875159.1|	-	5.4e-07	29.7	0.0	7.2e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	Mif2/CENP-C	like
MannoseP_isomer	PF01050.18	gi|564288936|ref|YP_008875159.1|	-	1.1e-05	25.3	0.0	1.4e-05	25.1	0.0	1.0	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Ectoine_synth	PF06339.12	gi|564288936|ref|YP_008875159.1|	-	0.00031	20.9	0.0	0.00037	20.7	0.0	1.1	1	0	0	1	1	1	1	Ectoine	synthase
Cupin_3	PF05899.12	gi|564288936|ref|YP_008875159.1|	-	0.00083	19.0	0.1	0.0011	18.6	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding_2	PF14525.6	gi|564288936|ref|YP_008875159.1|	-	0.0013	18.4	0.2	0.0015	18.2	0.2	1.1	1	0	0	1	1	1	1	AraC-binding-like	domain
Cupin_7	PF12973.7	gi|564288936|ref|YP_008875159.1|	-	0.0039	17.1	0.4	0.005	16.7	0.4	1.2	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
AraC_N	PF06719.13	gi|564288936|ref|YP_008875159.1|	-	0.0064	16.1	0.0	0.0083	15.8	0.0	1.2	1	0	0	1	1	1	1	AraC-type	transcriptional	regulator	N-terminus
DMSP_lyase	PF16867.5	gi|564288936|ref|YP_008875159.1|	-	0.0089	15.7	0.8	0.012	15.3	0.8	1.1	1	0	0	1	1	1	1	Dimethlysulfonioproprionate	lyase
ARD	PF03079.14	gi|564288936|ref|YP_008875159.1|	-	0.009	16.2	0.1	0.011	15.9	0.1	1.1	1	0	0	1	1	1	1	ARD/ARD'	family
Cupin_6	PF12852.7	gi|564288936|ref|YP_008875159.1|	-	0.014	15.1	0.1	0.016	15.0	0.1	1.1	1	0	0	1	1	1	0	Cupin
Auxin_BP	PF02041.16	gi|564288936|ref|YP_008875159.1|	-	0.086	12.5	0.1	0.13	11.9	0.1	1.5	1	1	0	1	1	1	0	Auxin	binding	protein
ATP1G1_PLM_MAT8	PF02038.16	gi|564288939|ref|YP_008875162.1|	-	0.056	12.9	0.8	0.092	12.2	0.1	1.8	2	0	0	2	2	2	0	ATP1G1/PLM/MAT8	family
Iso_dh	PF00180.20	gi|564288940|ref|YP_008875163.1|	-	9.3e-111	370.3	0.0	1.3e-110	369.9	0.0	1.2	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Asparaginase_2	PF01112.18	gi|564288941|ref|YP_008875164.1|	-	1.3e-56	191.9	11.5	1.5e-56	191.7	11.5	1.0	1	0	0	1	1	1	1	Asparaginase
Peptidase_M24	PF00557.24	gi|564288942|ref|YP_008875165.1|	-	8.7e-43	146.4	0.6	1.2e-42	146.0	0.6	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Nudix_N	PF12535.8	gi|564288942|ref|YP_008875165.1|	-	0.17	11.5	0.2	0.4	10.3	0.2	1.5	1	0	0	1	1	1	0	Hydrolase	of	X-linked	nucleoside	diphosphate	N	terminal
RecR	PF02132.15	gi|564288943|ref|YP_008875166.1|	-	0.039	13.5	1.5	1.3	8.7	0.2	2.2	2	0	0	2	2	2	0	RecR	protein
CpXC	PF14353.6	gi|564288943|ref|YP_008875166.1|	-	0.072	13.1	1.4	0.091	12.8	1.4	1.1	1	0	0	1	1	1	0	CpXC	protein
HIT	PF01230.23	gi|564288944|ref|YP_008875167.1|	-	2.3e-12	47.5	0.0	5.4e-12	46.3	0.0	1.5	2	0	0	2	2	2	1	HIT	domain
DcpS_C	PF11969.8	gi|564288944|ref|YP_008875167.1|	-	0.00016	22.1	0.0	0.00029	21.3	0.0	1.4	1	1	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|564288944|ref|YP_008875167.1|	-	0.00079	19.3	0.0	0.0015	18.4	0.0	1.4	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
TerD	PF02342.18	gi|564288944|ref|YP_008875167.1|	-	0.1	12.1	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	TerD	domain
Rieske	PF00355.26	gi|564288945|ref|YP_008875168.1|	-	2.6e-05	24.0	0.0	4.6e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Cation_efflux	PF01545.21	gi|564288946|ref|YP_008875169.1|	-	2.1e-39	135.4	5.0	2.6e-39	135.0	5.0	1.1	1	0	0	1	1	1	1	Cation	efflux	family
ZT_dimer	PF16916.5	gi|564288946|ref|YP_008875169.1|	-	2.4e-18	66.0	2.4	3.9e-18	65.3	2.4	1.3	1	0	0	1	1	1	1	Dimerisation	domain	of	Zinc	Transporter
DoxX	PF07681.12	gi|564288947|ref|YP_008875170.1|	-	1.1e-08	35.6	2.1	1.5e-08	35.1	2.1	1.2	1	0	0	1	1	1	1	DoxX
HR_lesion	PF05514.11	gi|564288947|ref|YP_008875170.1|	-	0.00016	21.9	0.0	0.026	14.7	0.0	2.1	1	1	1	2	2	2	2	HR-like	lesion-inducing
TPR_8	PF13181.6	gi|564288947|ref|YP_008875170.1|	-	0.53	10.6	2.2	29	5.2	0.1	3.1	2	1	1	3	3	3	0	Tetratricopeptide	repeat
Radical_SAM	PF04055.21	gi|564288948|ref|YP_008875171.1|	-	2e-21	77.1	0.0	3.7e-21	76.2	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.20	gi|564288948|ref|YP_008875171.1|	-	1.7e-19	69.7	0.1	3.4e-19	68.7	0.1	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.20	gi|564288948|ref|YP_008875171.1|	-	7.8e-06	25.8	0.2	1.6e-05	24.8	0.2	1.6	1	0	0	1	1	1	1	TRAM	domain
DUF63	PF01889.17	gi|564288950|ref|YP_008875173.1|	-	1.2e-19	71.6	14.0	1.7e-19	71.1	14.0	1.1	1	0	0	1	1	1	1	Membrane	protein	of	unknown	function	DUF63
LapA_dom	PF06305.11	gi|564288952|ref|YP_008875175.1|	-	0.022	14.5	0.0	0.022	14.5	0.0	3.3	4	0	0	4	4	4	0	Lipopolysaccharide	assembly	protein	A	domain
Phage_holin_2_1	PF04971.12	gi|564288952|ref|YP_008875175.1|	-	0.38	10.8	0.2	0.38	10.8	0.2	2.1	2	0	0	2	2	2	0	Bacteriophage	P21	holin	S
DUF2207	PF09972.9	gi|564288952|ref|YP_008875175.1|	-	7.4	5.2	5.6	2.8	6.6	3.7	1.5	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
FUSC_2	PF13515.6	gi|564288953|ref|YP_008875176.1|	-	0.023	14.8	0.7	0.024	14.8	0.7	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein-like
ATPase_gene1	PF09527.10	gi|564288953|ref|YP_008875176.1|	-	0.35	11.0	5.5	2.1	8.6	5.9	1.9	1	1	1	2	2	2	0	Putative	F0F1-ATPase	subunit	Ca2+/Mg2+	transporter
PNP_UDP_1	PF01048.20	gi|564288954|ref|YP_008875177.1|	-	4.3e-45	153.8	1.9	4.9e-45	153.6	1.9	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF3568	PF12092.8	gi|564288954|ref|YP_008875177.1|	-	0.12	12.4	0.0	0.32	11.1	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3568)
HPP	PF04982.13	gi|564288955|ref|YP_008875178.1|	-	6.6e-16	58.6	2.0	1.4e-15	57.5	2.0	1.6	1	0	0	1	1	1	1	HPP	family
Usp	PF00582.26	gi|564288955|ref|YP_008875178.1|	-	3.1e-05	24.5	1.6	0.014	15.9	0.3	3.9	2	2	0	3	3	3	1	Universal	stress	protein	family
UPF0444	PF15475.6	gi|564288955|ref|YP_008875178.1|	-	0.029	14.6	0.4	0.061	13.6	0.4	1.4	1	0	0	1	1	1	0	Transmembrane	protein	C12orf23,	UPF0444
TrkA_N	PF02254.18	gi|564288956|ref|YP_008875179.1|	-	1.7e-27	96.0	1.7	2.6e-27	95.4	1.7	1.3	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|564288956|ref|YP_008875179.1|	-	4e-14	52.3	4.8	1.7e-13	50.3	2.0	2.6	2	0	0	2	2	2	1	Ion	channel
Ion_trans	PF00520.31	gi|564288956|ref|YP_008875179.1|	-	0.00019	20.8	0.0	0.0003	20.1	0.0	1.3	1	0	0	1	1	1	1	Ion	transport	protein
NAD_binding_7	PF13241.6	gi|564288956|ref|YP_008875179.1|	-	0.0013	19.1	0.3	0.0037	17.7	0.2	1.7	1	1	0	1	1	1	1	Putative	NAD(P)-binding
VKOR	PF07884.14	gi|564288956|ref|YP_008875179.1|	-	7.9	6.7	7.4	5.1	7.3	0.5	2.7	2	1	0	2	2	2	0	Vitamin	K	epoxide	reductase	family
TrkA_C	PF02080.21	gi|564288957|ref|YP_008875180.1|	-	2.3e-13	49.8	0.4	6.5e-12	45.1	0.1	2.7	2	0	0	2	2	2	1	TrkA-C	domain
TrkA_C	PF02080.21	gi|564288958|ref|YP_008875181.1|	-	2.6e-05	24.0	2.3	3.5e-05	23.5	0.0	2.3	3	0	0	3	3	3	1	TrkA-C	domain
ThiS	PF02597.20	gi|564288959|ref|YP_008875182.1|	-	3.9e-11	43.4	0.2	4.7e-11	43.2	0.2	1.1	1	0	0	1	1	1	1	ThiS	family
MR_MLE_C	PF13378.6	gi|564288959|ref|YP_008875182.1|	-	0.017	14.7	1.4	0.02	14.5	1.4	1.0	1	0	0	1	1	1	0	Enolase	C-terminal	domain-like
DUF1902	PF08972.11	gi|564288959|ref|YP_008875182.1|	-	0.041	13.9	0.4	0.058	13.4	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1902)
DUF5061	PF16587.5	gi|564288959|ref|YP_008875182.1|	-	0.067	13.3	0.0	0.09	12.8	0.0	1.3	1	0	0	1	1	1	0	17	kDa	common-antigen	outer	membrane	protein
STN	PF07660.14	gi|564288959|ref|YP_008875182.1|	-	0.22	11.4	0.0	0.4	10.5	0.0	1.4	1	0	0	1	1	1	0	Secretin	and	TonB	N	terminus	short	domain
HisKA_7TM	PF16927.5	gi|564288960|ref|YP_008875183.1|	-	7.3e-16	58.9	14.3	1.1e-15	58.3	14.3	1.2	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HisKA	PF00512.25	gi|564288960|ref|YP_008875183.1|	-	0.00073	19.5	0.3	0.0044	17.0	0.1	2.3	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
SPOB_a	PF14689.6	gi|564288960|ref|YP_008875183.1|	-	0.014	15.0	0.2	0.04	13.6	0.2	1.8	1	1	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Acetyltransf_1	PF00583.25	gi|564288961|ref|YP_008875184.1|	-	1.6e-09	38.0	0.0	3.5e-09	36.9	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_6	PF13480.7	gi|564288961|ref|YP_008875184.1|	-	2e-07	31.3	5.1	5.5e-07	29.8	1.4	2.3	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564288961|ref|YP_008875184.1|	-	9.4e-05	22.8	0.0	0.00018	21.9	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564288961|ref|YP_008875184.1|	-	0.00028	20.8	0.0	0.00051	20.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF4821	PF16092.5	gi|564288961|ref|YP_008875184.1|	-	0.009	15.7	0.1	0.013	15.1	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4821)
Acetyltransf_3	PF13302.7	gi|564288961|ref|YP_008875184.1|	-	0.013	16.1	0.7	0.029	15.1	0.3	1.7	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564288961|ref|YP_008875184.1|	-	0.019	15.1	0.0	0.043	13.9	0.0	1.6	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Asparaginase	PF00710.20	gi|564288962|ref|YP_008875185.1|	-	1e-60	204.6	0.8	2.1e-60	203.6	0.8	1.5	1	0	0	1	1	1	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|564288962|ref|YP_008875185.1|	-	5.8e-27	94.2	0.0	5.1e-26	91.1	0.0	2.3	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
GatD_N	PF18195.1	gi|564288962|ref|YP_008875185.1|	-	2e-16	59.0	0.0	3.5e-16	58.2	0.0	1.4	1	0	0	1	1	1	1	GatD	N-terminal	domain
DUF2530	PF10745.9	gi|564288964|ref|YP_008875187.1|	-	0.012	15.8	0.7	1.4	9.2	0.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
DUF2244	PF10003.9	gi|564288964|ref|YP_008875187.1|	-	3.8	7.2	4.6	1	9.0	0.5	1.9	1	1	1	2	2	2	0	Integral	membrane	protein	(DUF2244)
Na_H_antiporter	PF03553.14	gi|564288965|ref|YP_008875188.1|	-	1.8e-69	234.3	30.1	1.3e-67	228.2	14.2	2.5	2	1	1	3	3	3	2	Na+/H+	antiporter	family
DUF2830	PF11125.8	gi|564288965|ref|YP_008875188.1|	-	0.15	12.0	0.6	0.49	10.4	0.6	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2830)
Cytochrom_B_C	PF00032.17	gi|564288965|ref|YP_008875188.1|	-	2.7	8.3	6.4	0.94	9.8	0.4	3.1	3	1	0	3	3	3	0	Cytochrome	b(C-terminal)/b6/petD
UPF0767	PF15990.5	gi|564288965|ref|YP_008875188.1|	-	4.6	7.4	5.8	14	5.9	0.2	3.1	3	0	0	3	3	3	0	UPF0767	family
CcmD	PF04995.14	gi|564288965|ref|YP_008875188.1|	-	5.3	7.2	7.1	1.2	9.3	1.1	3.1	2	0	0	2	2	2	0	Heme	exporter	protein	D	(CcmD)
HTH_5	PF01022.20	gi|564288966|ref|YP_008875189.1|	-	6.4e-16	57.9	0.2	1.3e-14	53.7	0.0	2.9	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|564288966|ref|YP_008875189.1|	-	1.9e-12	47.0	0.2	3e-10	40.0	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564288966|ref|YP_008875189.1|	-	1.5e-10	40.8	0.0	4.6e-06	26.4	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564288966|ref|YP_008875189.1|	-	1.2e-09	37.9	0.7	4.2e-07	29.8	0.1	2.7	3	0	0	3	3	3	1	MarR	family
MarR	PF01047.22	gi|564288966|ref|YP_008875189.1|	-	3.2e-07	30.1	0.0	9.7e-06	25.4	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564288966|ref|YP_008875189.1|	-	6.9e-06	26.0	0.0	0.0012	18.7	0.0	2.4	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288966|ref|YP_008875189.1|	-	8.8e-06	25.2	0.1	0.00012	21.6	0.1	2.8	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Fe_dep_repress	PF01325.19	gi|564288966|ref|YP_008875189.1|	-	9.4e-06	25.7	0.0	0.00035	20.7	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|564288966|ref|YP_008875189.1|	-	1.7e-05	25.1	0.0	0.006	16.9	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
GntR	PF00392.21	gi|564288966|ref|YP_008875189.1|	-	5.1e-05	22.9	0.1	0.087	12.5	0.0	2.8	3	0	0	3	3	3	2	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|564288966|ref|YP_008875189.1|	-	0.0001	22.2	0.0	0.00022	21.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
DprA_WH	PF17782.1	gi|564288966|ref|YP_008875189.1|	-	0.00016	21.7	1.3	0.0038	17.3	0.0	2.7	2	1	0	2	2	2	1	DprA	winged	helix	domain
PadR	PF03551.14	gi|564288966|ref|YP_008875189.1|	-	0.00022	21.1	0.8	0.0058	16.6	0.1	3.4	3	2	1	4	4	4	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|564288966|ref|YP_008875189.1|	-	0.00084	19.8	0.1	0.056	14.0	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|564288966|ref|YP_008875189.1|	-	0.0033	17.2	0.2	0.094	12.5	0.0	2.7	3	0	0	3	3	2	1	LexA	DNA	binding	domain
HTH_CodY	PF08222.11	gi|564288966|ref|YP_008875189.1|	-	0.0054	16.2	0.0	0.011	15.3	0.0	1.4	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288966|ref|YP_008875189.1|	-	0.015	15.1	0.2	0.074	12.9	0.0	2.4	2	1	0	2	2	2	0	IclR	helix-turn-helix	domain
DUF4423	PF14394.6	gi|564288966|ref|YP_008875189.1|	-	0.017	14.9	0.0	7.1	6.3	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_47	PF16221.5	gi|564288966|ref|YP_008875189.1|	-	0.019	14.5	0.1	6.5	6.4	0.0	2.5	2	0	0	2	2	2	0	winged	helix-turn-helix
Cdc6_C	PF09079.11	gi|564288966|ref|YP_008875189.1|	-	0.022	14.7	0.1	0.35	10.9	0.0	2.3	2	0	0	2	2	2	0	CDC6,	C	terminal	winged	helix	domain
HTH_AsnC-type	PF13404.6	gi|564288966|ref|YP_008875189.1|	-	0.029	14.2	0.1	0.55	10.1	0.0	3.3	3	1	0	3	3	2	0	AsnC-type	helix-turn-helix	domain
Mnd1	PF03962.15	gi|564288966|ref|YP_008875189.1|	-	0.03	14.6	0.0	2.4	8.5	0.0	2.4	2	0	0	2	2	2	0	Mnd1	HTH	domain
HTH_10	PF04967.12	gi|564288966|ref|YP_008875189.1|	-	0.038	13.8	0.0	0.11	12.3	0.0	1.8	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF2250	PF10007.9	gi|564288966|ref|YP_008875189.1|	-	0.044	13.9	0.0	0.2	11.8	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
BLACT_WH	PF17778.1	gi|564288966|ref|YP_008875189.1|	-	0.055	13.5	8.1	0.16	12.0	0.1	3.1	3	0	0	3	3	3	0	Beta-lactamase	associated	winged	helix	domain
RP-C	PF03428.13	gi|564288966|ref|YP_008875189.1|	-	0.063	12.9	0.1	0.89	9.2	0.0	2.5	3	0	0	3	3	3	0	Replication	protein	C	N-terminal	domain
DDRGK	PF09756.9	gi|564288966|ref|YP_008875189.1|	-	0.069	12.7	0.1	0.19	11.3	0.0	1.6	2	0	0	2	2	2	0	DDRGK	domain
HxlR	PF01638.17	gi|564288966|ref|YP_008875189.1|	-	0.12	12.2	0.0	1.4	8.8	0.0	2.3	2	0	0	2	2	2	0	HxlR-like	helix-turn-helix
HTH_36	PF13730.6	gi|564288966|ref|YP_008875189.1|	-	0.15	12.0	0.0	0.36	10.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
CdvA	PF18822.1	gi|564288967|ref|YP_008875190.1|	-	0.00024	20.9	1.5	0.00043	20.1	1.6	1.4	1	1	0	1	1	1	1	CdvA-like	coiled-coil	domain
CALCOCO1	PF07888.11	gi|564288967|ref|YP_008875190.1|	-	0.00064	18.7	2.8	0.0009	18.2	2.8	1.1	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Leu_zip	PF15294.6	gi|564288967|ref|YP_008875190.1|	-	0.022	14.3	1.7	0.032	13.8	1.7	1.2	1	0	0	1	1	1	0	Leucine	zipper
GvpG	PF05120.12	gi|564288967|ref|YP_008875190.1|	-	0.025	14.6	1.7	0.051	13.6	1.7	1.5	1	0	0	1	1	1	0	Gas	vesicle	protein	G
Spc7	PF08317.11	gi|564288967|ref|YP_008875190.1|	-	0.042	12.7	2.2	0.06	12.2	2.2	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Fmp27_WPPW	PF10359.9	gi|564288967|ref|YP_008875190.1|	-	0.13	11.1	1.1	0.2	10.5	1.1	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
ABC_tran_CTD	PF16326.5	gi|564288967|ref|YP_008875190.1|	-	0.22	11.8	3.7	0.26	11.5	2.5	1.6	1	1	1	2	2	2	0	ABC	transporter	C-terminal	domain
CLZ	PF16526.5	gi|564288967|ref|YP_008875190.1|	-	0.31	11.4	2.7	0.47	10.9	1.3	2.0	1	1	0	1	1	1	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DivIC	PF04977.15	gi|564288967|ref|YP_008875190.1|	-	0.75	9.6	4.1	1.8	8.4	3.7	1.8	1	1	0	1	1	1	0	Septum	formation	initiator
GBP_C	PF02841.14	gi|564288967|ref|YP_008875190.1|	-	0.82	9.0	5.9	1	8.7	5.9	1.1	1	0	0	1	1	1	0	Guanylate-binding	protein,	C-terminal	domain
DUF1405	PF07187.11	gi|564288968|ref|YP_008875191.1|	-	4.8e-35	120.9	11.6	4.8e-35	120.9	11.6	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1405)
HTH_10	PF04967.12	gi|564288970|ref|YP_008875194.1|	-	3e-16	58.9	0.0	5e-16	58.2	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564288970|ref|YP_008875194.1|	-	4.3e-05	23.4	0.0	8.8e-05	22.4	0.0	1.6	1	1	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|564288970|ref|YP_008875194.1|	-	0.00077	18.9	0.0	0.0014	18.1	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
Peptidase_S49	PF01343.18	gi|564288970|ref|YP_008875194.1|	-	0.014	15.3	0.0	0.023	14.6	0.0	1.3	1	0	0	1	1	1	0	Peptidase	family	S49
MarR_2	PF12802.7	gi|564288970|ref|YP_008875194.1|	-	0.057	13.3	0.1	0.11	12.4	0.1	1.5	1	0	0	1	1	1	0	MarR	family
HTH_37	PF13744.6	gi|564288970|ref|YP_008875194.1|	-	0.12	12.3	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
acVLRF1	PF18859.1	gi|564288971|ref|YP_008875195.1|	-	3.8e-30	104.8	1.0	3.8e-30	104.8	1.0	2.5	2	1	1	3	3	1	1	Actinobacteria/chloroflexi	VLRF1	release	factor
ERM	PF00769.19	gi|564288971|ref|YP_008875195.1|	-	0.00016	21.6	6.3	0.00023	21.0	6.3	1.2	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
HOOK	PF05622.12	gi|564288971|ref|YP_008875195.1|	-	0.00021	19.6	6.4	0.0003	19.1	6.4	1.1	1	0	0	1	1	1	1	HOOK	protein
eRF1_2	PF03464.15	gi|564288971|ref|YP_008875195.1|	-	0.00091	19.5	0.2	0.0026	18.1	0.0	1.8	2	0	0	2	2	1	1	eRF1	domain	2
ATG16	PF08614.11	gi|564288971|ref|YP_008875195.1|	-	0.001	19.3	12.8	0.0018	18.5	12.8	1.3	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
bZIP_1	PF00170.21	gi|564288971|ref|YP_008875195.1|	-	0.002	18.2	12.1	0.25	11.5	4.7	2.4	1	1	1	2	2	2	2	bZIP	transcription	factor
CLZ	PF16526.5	gi|564288971|ref|YP_008875195.1|	-	0.008	16.5	10.6	0.0096	16.3	5.9	2.7	1	1	0	2	2	2	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
KASH_CCD	PF14662.6	gi|564288971|ref|YP_008875195.1|	-	0.0084	15.9	8.3	0.013	15.4	8.3	1.2	1	0	0	1	1	1	1	Coiled-coil	region	of	CCDC155	or	KASH
Mto2_bdg	PF12808.7	gi|564288971|ref|YP_008875195.1|	-	0.0096	16.2	4.4	0.0096	16.2	4.4	2.6	1	1	1	2	2	2	1	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
bZIP_2	PF07716.15	gi|564288971|ref|YP_008875195.1|	-	0.017	15.2	15.1	0.26	11.4	2.6	2.5	1	1	1	2	2	2	0	Basic	region	leucine	zipper
TMPIT	PF07851.13	gi|564288971|ref|YP_008875195.1|	-	0.017	14.4	0.8	0.025	13.8	0.8	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
Leu_zip	PF15294.6	gi|564288971|ref|YP_008875195.1|	-	0.02	14.4	4.0	0.03	13.9	4.0	1.2	1	0	0	1	1	1	0	Leucine	zipper
Uso1_p115_C	PF04871.13	gi|564288971|ref|YP_008875195.1|	-	0.036	14.4	9.7	0.07	13.5	9.7	1.5	1	0	0	1	1	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
DUF724	PF05266.14	gi|564288971|ref|YP_008875195.1|	-	0.053	13.4	3.8	0.097	12.5	3.8	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
FlxA	PF14282.6	gi|564288971|ref|YP_008875195.1|	-	0.056	13.4	0.7	0.056	13.4	0.7	1.5	2	0	0	2	2	1	0	FlxA-like	protein
TSC22	PF01166.18	gi|564288971|ref|YP_008875195.1|	-	0.077	13.3	9.2	1.1	9.7	0.7	2.5	2	1	0	2	2	2	0	TSC-22/dip/bun	family
Fmp27_WPPW	PF10359.9	gi|564288971|ref|YP_008875195.1|	-	0.08	11.8	4.7	0.12	11.3	4.7	1.2	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
ZapB	PF06005.12	gi|564288971|ref|YP_008875195.1|	-	0.093	13.2	17.4	0.84	10.1	5.1	2.6	1	1	1	2	2	2	0	Cell	division	protein	ZapB
FPP	PF05911.11	gi|564288971|ref|YP_008875195.1|	-	0.094	10.9	7.4	0.13	10.5	7.4	1.1	1	0	0	1	1	1	0	Filament-like	plant	protein,	long	coiled-coil
Laminin_II	PF06009.12	gi|564288971|ref|YP_008875195.1|	-	0.1	12.6	2.6	0.18	11.8	2.6	1.4	1	0	0	1	1	1	0	Laminin	Domain	II
Jnk-SapK_ap_N	PF09744.9	gi|564288971|ref|YP_008875195.1|	-	0.12	12.6	14.2	0.29	11.4	14.2	1.6	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
ADIP	PF11559.8	gi|564288971|ref|YP_008875195.1|	-	0.15	12.1	8.5	0.34	11.0	8.5	1.6	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
CENP-Q	PF13094.6	gi|564288971|ref|YP_008875195.1|	-	0.22	11.7	15.2	0.66	10.2	15.2	1.8	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Snapin_Pallidin	PF14712.6	gi|564288971|ref|YP_008875195.1|	-	0.23	11.9	5.0	2.3	8.7	5.0	2.4	1	1	0	1	1	1	0	Snapin/Pallidin
DUF4407	PF14362.6	gi|564288971|ref|YP_008875195.1|	-	0.26	10.6	4.8	0.47	9.8	4.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Atg14	PF10186.9	gi|564288971|ref|YP_008875195.1|	-	0.43	9.6	5.3	0.81	8.7	5.3	1.4	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
5_nucleotid	PF05761.14	gi|564288971|ref|YP_008875195.1|	-	0.47	9.3	2.6	0.68	8.8	2.6	1.2	1	0	0	1	1	1	0	5'	nucleotidase	family
DUF1664	PF07889.12	gi|564288971|ref|YP_008875195.1|	-	0.47	10.5	2.0	0.88	9.6	1.4	1.7	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF1664)
Cgr1	PF03879.14	gi|564288971|ref|YP_008875195.1|	-	0.53	10.7	9.3	1.3	9.4	9.3	1.6	1	0	0	1	1	1	0	Cgr1	family
DUF4988	PF16378.5	gi|564288971|ref|YP_008875195.1|	-	0.64	9.7	2.5	3.7	7.2	0.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function
WD40_alt	PF14077.6	gi|564288971|ref|YP_008875195.1|	-	0.8	9.6	5.1	2	8.4	0.3	2.4	2	0	0	2	2	2	0	Alternative	WD40	repeat	motif
Spc7	PF08317.11	gi|564288971|ref|YP_008875195.1|	-	0.81	8.5	7.7	1.3	7.9	7.7	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
OmpH	PF03938.14	gi|564288971|ref|YP_008875195.1|	-	0.84	10.0	5.8	2.2	8.6	5.7	1.7	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
DUF4337	PF14235.6	gi|564288971|ref|YP_008875195.1|	-	0.93	9.6	6.9	1.4	9.0	6.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4337)
Dor1	PF04124.12	gi|564288971|ref|YP_008875195.1|	-	0.96	8.1	6.4	1.4	7.5	6.4	1.2	1	0	0	1	1	1	0	Dor1-like	family
DivIC	PF04977.15	gi|564288971|ref|YP_008875195.1|	-	0.98	9.2	13.4	0.89	9.4	4.0	3.0	2	1	1	3	3	3	0	Septum	formation	initiator
VSG_B	PF13206.6	gi|564288971|ref|YP_008875195.1|	-	1.1	8.4	3.9	1.6	7.9	3.9	1.1	1	0	0	1	1	1	0	Trypanosomal	VSG	domain
SlyX	PF04102.12	gi|564288971|ref|YP_008875195.1|	-	1.1	9.9	10.6	4	8.1	10.6	2.0	1	0	0	1	1	1	0	SlyX
DUF1192	PF06698.11	gi|564288971|ref|YP_008875195.1|	-	1.2	9.3	14.8	2.3	8.3	5.6	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
FapA	PF03961.13	gi|564288971|ref|YP_008875195.1|	-	1.2	7.7	3.0	1.6	7.2	3.0	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
GAS	PF13851.6	gi|564288971|ref|YP_008875195.1|	-	1.2	8.4	10.1	0.26	10.6	6.8	1.5	2	0	0	2	2	1	0	Growth-arrest	specific	micro-tubule	binding
betaPIX_CC	PF16523.5	gi|564288971|ref|YP_008875195.1|	-	1.5	8.7	13.1	1.5	8.7	4.8	2.3	1	1	1	2	2	2	0	betaPIX	coiled	coil
Tho2	PF11262.8	gi|564288971|ref|YP_008875195.1|	-	1.7	7.8	3.0	2.4	7.3	3.0	1.2	1	0	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
Spc24	PF08286.11	gi|564288971|ref|YP_008875195.1|	-	2	8.7	10.0	0.88	9.8	4.0	2.3	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
DUF2802	PF10975.8	gi|564288971|ref|YP_008875195.1|	-	2.1	8.5	8.4	5.5	7.2	0.7	2.9	2	1	1	3	3	2	0	Protein	of	unknown	function	(DUF2802)
Ax_dynein_light	PF10211.9	gi|564288971|ref|YP_008875195.1|	-	2.1	8.3	10.7	9.8	6.1	4.5	2.1	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
UPF0242	PF06785.11	gi|564288971|ref|YP_008875195.1|	-	2.3	8.3	6.7	4.6	7.3	6.7	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
Csm1_N	PF18504.1	gi|564288971|ref|YP_008875195.1|	-	2.6	8.5	10.3	8.9	6.7	1.4	2.5	1	1	0	2	2	2	0	Csm1	N-terminal	domain
DUF1690	PF07956.11	gi|564288971|ref|YP_008875195.1|	-	3.1	8.2	9.4	7.1	7.1	8.3	2.0	2	0	0	2	2	2	0	Protein	of	Unknown	function	(DUF1690)
V_ATPase_I	PF01496.19	gi|564288971|ref|YP_008875195.1|	-	3.4	5.5	3.5	4.3	5.1	3.5	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
YabA	PF06156.13	gi|564288971|ref|YP_008875195.1|	-	3.8	8.2	6.8	11	6.8	6.4	1.9	1	1	1	2	2	2	0	Initiation	control	protein	YabA
Troponin	PF00992.20	gi|564288971|ref|YP_008875195.1|	-	5	7.4	12.4	11	6.3	12.3	1.6	1	1	0	1	1	1	0	Troponin
CorA	PF01544.18	gi|564288971|ref|YP_008875195.1|	-	5.2	6.3	8.1	4.7	6.4	6.9	1.4	2	0	0	2	2	1	0	CorA-like	Mg2+	transporter	protein
DUF2203	PF09969.9	gi|564288971|ref|YP_008875195.1|	-	8.6	7.1	8.5	2.2	9.0	0.8	2.4	2	1	1	3	3	2	0	Uncharacterized	conserved	protein	(DUF2203)
DUF1611	PF07755.11	gi|564288972|ref|YP_008875196.1|	-	4.9e-73	244.7	1.3	6.4e-73	244.3	1.3	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
DUF1611_N	PF17396.2	gi|564288972|ref|YP_008875196.1|	-	2.6e-31	107.7	0.1	1.5e-30	105.3	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
MR_MLE_C	PF13378.6	gi|564288973|ref|YP_008875197.1|	-	8.1e-39	133.5	3.6	1.2e-38	132.9	3.6	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564288973|ref|YP_008875197.1|	-	2.8e-09	37.2	0.4	7.9e-09	35.7	0.0	2.0	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MAAL_C	PF07476.11	gi|564288973|ref|YP_008875197.1|	-	0.0017	17.6	0.3	0.0027	16.9	0.3	1.3	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
AhpC-TSA	PF00578.21	gi|564288974|ref|YP_008875198.1|	-	3.2e-30	104.6	0.0	3.7e-30	104.4	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564288974|ref|YP_008875198.1|	-	1.4e-23	83.2	0.0	1.6e-23	83.0	0.0	1.0	1	0	0	1	1	1	1	Redoxin
DUF899	PF05988.12	gi|564288974|ref|YP_008875198.1|	-	0.0013	18.3	0.0	0.0017	17.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
AhpC-TSA_2	PF13911.6	gi|564288974|ref|YP_008875198.1|	-	0.015	15.4	0.0	1.3	9.2	0.0	2.1	1	1	1	2	2	2	0	AhpC/TSA	antioxidant	enzyme
Hexapep	PF00132.24	gi|564288976|ref|YP_008875200.1|	-	8e-12	44.4	13.5	0.0011	18.6	0.3	4.4	2	1	2	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564288976|ref|YP_008875200.1|	-	2.1e-06	27.4	6.4	0.0023	17.6	0.2	3.5	3	1	0	3	3	3	3	Hexapeptide	repeat	of	succinyl-transferase
Fucokinase	PF07959.12	gi|564288976|ref|YP_008875200.1|	-	0.0068	15.4	0.0	0.007	15.4	0.0	1.1	1	0	0	1	1	1	1	L-fucokinase
Usp	PF00582.26	gi|564288977|ref|YP_008875201.1|	-	1.1e-34	119.9	2.0	1.3e-34	119.7	2.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
tRNA-synt_2b	PF00587.25	gi|564288979|ref|YP_008875203.1|	-	1e-27	97.2	0.0	1.9e-27	96.4	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.20	gi|564288979|ref|YP_008875203.1|	-	5.3e-15	55.3	0.4	1.2e-14	54.2	0.4	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
TGS	PF02824.21	gi|564288979|ref|YP_008875203.1|	-	5.5e-14	52.0	0.2	1.3e-13	50.8	0.2	1.7	1	0	0	1	1	1	1	TGS	domain
tRNA_SAD	PF07973.14	gi|564288979|ref|YP_008875203.1|	-	2.5e-13	49.9	0.0	4.7e-13	49.0	0.0	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
ThiS	PF02597.20	gi|564288979|ref|YP_008875203.1|	-	0.18	12.4	2.4	1	10.1	0.1	3.0	3	0	0	3	3	3	0	ThiS	family
DAGK_cat	PF00781.24	gi|564288981|ref|YP_008875205.1|	-	1e-20	73.6	0.4	1.9e-20	72.7	0.4	1.4	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
CitMHS	PF03600.16	gi|564288982|ref|YP_008875206.1|	-	2.4e-59	201.0	7.6	2.4e-59	201.0	7.6	1.4	1	1	1	2	2	2	1	Citrate	transporter
TrkA_C	PF02080.21	gi|564288982|ref|YP_008875206.1|	-	1.7e-18	66.2	2.7	2.4e-09	36.9	0.4	3.4	3	0	0	3	3	3	3	TrkA-C	domain
Na_sulph_symp	PF00939.19	gi|564288982|ref|YP_008875206.1|	-	4.8e-13	49.0	36.8	2e-09	37.0	16.1	3.0	2	1	0	2	2	2	2	Sodium:sulfate	symporter	transmembrane	region
acVLRF1	PF18859.1	gi|564288982|ref|YP_008875206.1|	-	1.7	9.0	6.1	5.5	7.3	2.5	2.8	2	1	1	3	3	3	0	Actinobacteria/chloroflexi	VLRF1	release	factor
DUF3285	PF11688.8	gi|564288982|ref|YP_008875206.1|	-	2.1	8.3	4.5	0.84	9.6	0.2	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3285)
PspA_IM30	PF04012.12	gi|564288983|ref|YP_008875207.1|	-	8.9e-34	117.0	39.4	8.9e-34	117.0	39.4	1.7	2	0	0	2	2	2	1	PspA/IM30	family
Snf7	PF03357.21	gi|564288983|ref|YP_008875207.1|	-	0.0016	18.1	19.2	0.0016	18.1	19.2	4.3	1	1	3	4	4	4	1	Snf7
DUF1664	PF07889.12	gi|564288983|ref|YP_008875207.1|	-	0.025	14.6	7.5	0.025	14.6	7.5	3.5	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF1664)
ERM	PF00769.19	gi|564288983|ref|YP_008875207.1|	-	0.05	13.4	53.6	0.14	12.0	53.6	1.7	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
YabA	PF06156.13	gi|564288983|ref|YP_008875207.1|	-	0.2	12.3	34.3	0.22	12.2	5.7	3.8	1	1	2	3	3	3	0	Initiation	control	protein	YabA
FTA4	PF13093.6	gi|564288983|ref|YP_008875207.1|	-	0.67	9.8	32.7	0.08	12.8	6.4	3.5	1	1	2	3	3	3	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
DUF3138	PF11336.8	gi|564288983|ref|YP_008875207.1|	-	0.68	8.5	6.5	1.2	7.7	6.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3138)
DUF3535	PF12054.8	gi|564288983|ref|YP_008875207.1|	-	0.71	9.1	15.6	0.83	8.8	15.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3535)
DUF3450	PF11932.8	gi|564288983|ref|YP_008875207.1|	-	0.93	8.7	44.5	0.14	11.5	7.2	3.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
AAA_13	PF13166.6	gi|564288983|ref|YP_008875207.1|	-	1	7.9	33.6	0.46	9.1	30.5	1.8	1	1	1	2	2	2	0	AAA	domain
YlqD	PF11068.8	gi|564288983|ref|YP_008875207.1|	-	2.3	8.6	44.2	1.2	9.6	17.2	3.4	1	1	2	3	3	3	0	YlqD	protein
DUF948	PF06103.11	gi|564288983|ref|YP_008875207.1|	-	3.2	8.1	15.1	1.4	9.2	0.6	3.7	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Prominin	PF05478.11	gi|564288983|ref|YP_008875207.1|	-	4.2	5.2	17.8	23	2.7	17.3	1.8	1	1	0	1	1	1	0	Prominin
TFIIA	PF03153.13	gi|564288983|ref|YP_008875207.1|	-	5.3	6.9	35.8	6.1	6.7	35.8	1.0	1	0	0	1	1	1	0	Transcription	factor	IIA,	alpha/beta	subunit
FliD_N	PF02465.18	gi|564288983|ref|YP_008875207.1|	-	7.7	7.3	23.3	2.8	8.7	8.6	3.9	1	1	2	3	3	3	0	Flagellar	hook-associated	protein	2	N-terminus
DUF4200	PF13863.6	gi|564288983|ref|YP_008875207.1|	-	9.3	6.7	52.3	0.82	10.1	23.1	4.5	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4200)
Thioesterase	PF00975.20	gi|564288984|ref|YP_008875208.1|	-	0.00045	20.4	0.1	0.0047	17.1	0.1	1.9	2	0	0	2	2	2	1	Thioesterase	domain
DLH	PF01738.18	gi|564288984|ref|YP_008875208.1|	-	0.0044	16.6	0.0	0.0075	15.8	0.0	1.3	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
FSH1	PF03959.13	gi|564288984|ref|YP_008875208.1|	-	0.0093	15.6	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
LIP	PF03583.14	gi|564288984|ref|YP_008875208.1|	-	0.066	12.5	0.1	0.099	11.9	0.1	1.4	1	0	0	1	1	1	0	Secretory	lipase
VirJ	PF06057.11	gi|564288984|ref|YP_008875208.1|	-	0.072	13.0	0.0	2	8.2	0.0	2.1	1	1	1	2	2	2	0	Bacterial	virulence	protein	(VirJ)
BAAT_C	PF08840.11	gi|564288984|ref|YP_008875208.1|	-	0.087	12.7	0.1	0.6	10.0	0.0	1.9	1	1	1	2	2	2	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_6	PF12697.7	gi|564288984|ref|YP_008875208.1|	-	0.1	13.2	12.7	0.46	11.1	7.0	2.1	1	1	1	2	2	2	0	Alpha/beta	hydrolase	family
GFO_IDH_MocA	PF01408.22	gi|564288984|ref|YP_008875208.1|	-	0.17	12.7	0.0	27	5.6	0.0	2.3	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Hydrolase_4	PF12146.8	gi|564288984|ref|YP_008875208.1|	-	0.19	11.0	0.3	4.7	6.4	0.0	2.1	1	1	1	2	2	2	0	Serine	aminopeptidase,	S33
VirB3	PF05101.13	gi|564288985|ref|YP_008875209.1|	-	0.27	11.5	3.0	0.3	11.4	3.0	1.1	1	0	0	1	1	1	0	Type	IV	secretory	pathway,	VirB3-like	protein
CTP_synth_N	PF06418.14	gi|564288987|ref|YP_008875211.1|	-	5.9e-124	412.6	0.2	7.8e-124	412.2	0.2	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.28	gi|564288987|ref|YP_008875211.1|	-	1.4e-54	184.8	0.0	2.3e-54	184.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|564288987|ref|YP_008875211.1|	-	3.9e-05	23.5	0.0	0.0001	22.1	0.0	1.7	2	0	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.23	gi|564288987|ref|YP_008875211.1|	-	0.0028	17.7	0.0	0.0037	17.3	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase_3	PF07685.14	gi|564288987|ref|YP_008875211.1|	-	0.014	15.0	0.0	0.03	13.9	0.0	1.5	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.24	gi|564288987|ref|YP_008875211.1|	-	0.17	11.7	0.0	2	8.2	0.0	2.4	2	0	0	2	2	2	0	DJ-1/PfpI	family
GMP_synt_C	PF00958.22	gi|564288988|ref|YP_008875212.1|	-	6.9e-29	99.8	0.2	2.9e-28	97.7	0.1	2.0	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.17	gi|564288988|ref|YP_008875212.1|	-	3.9e-08	32.7	0.0	3.8e-05	22.9	0.0	2.2	2	0	0	2	2	2	2	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|564288988|ref|YP_008875212.1|	-	0.00041	19.2	0.0	0.0077	15.1	0.0	2.1	2	0	0	2	2	2	1	tRNA	methyl	transferase
QueC	PF06508.13	gi|564288988|ref|YP_008875212.1|	-	0.0049	16.4	0.0	0.019	14.5	0.0	1.9	1	1	1	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.21	gi|564288988|ref|YP_008875212.1|	-	0.046	13.4	0.0	0.08	12.6	0.0	1.4	1	0	0	1	1	1	0	Asparagine	synthase
ThiI	PF02568.14	gi|564288988|ref|YP_008875212.1|	-	0.056	13.0	0.0	0.13	11.8	0.0	1.6	1	1	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
PAPS_reduct	PF01507.19	gi|564288988|ref|YP_008875212.1|	-	0.11	12.5	0.0	0.2	11.7	0.0	1.5	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
TrkA_N	PF02254.18	gi|564288989|ref|YP_008875213.1|	-	4.7e-05	23.6	0.2	5e-05	23.5	0.2	1.2	1	0	0	1	1	1	1	TrkA-N	domain
TM_helix	PF05552.12	gi|564291294|ref|YP_008875214.1|	-	2.5e-15	56.2	7.6	1.3e-06	28.2	0.3	4.7	6	0	0	6	6	6	3	Conserved	TM	helix
FtsX	PF02687.21	gi|564291294|ref|YP_008875214.1|	-	3	8.4	24.9	0.55	10.7	0.1	4.3	2	2	1	4	4	4	0	FtsX-like	permease	family
Lactamase_B	PF00753.27	gi|564288990|ref|YP_008875215.1|	-	1.5e-22	80.6	7.7	1.8e-22	80.3	7.7	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|564288990|ref|YP_008875215.1|	-	0.0005	19.6	0.2	0.0008	19.0	0.2	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|564288990|ref|YP_008875215.1|	-	0.064	12.7	0.0	0.093	12.1	0.0	1.2	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
Aldo_ket_red	PF00248.21	gi|564288991|ref|YP_008875216.1|	-	2.7e-58	197.5	0.0	2.1e-44	151.9	0.0	2.0	1	1	1	2	2	2	2	Aldo/keto	reductase	family
DEP	PF00610.21	gi|564288991|ref|YP_008875216.1|	-	0.17	12.0	0.0	0.35	11.0	0.0	1.5	1	0	0	1	1	1	0	Domain	found	in	Dishevelled,	Egl-10,	and	Pleckstrin	(DEP)
DHHW	PF14286.6	gi|564288992|ref|YP_008875217.1|	-	0.017	14.5	0.2	0.025	13.9	0.2	1.2	1	0	0	1	1	1	0	DHHW	protein
ANAPC4_WD40	PF12894.7	gi|564288992|ref|YP_008875217.1|	-	0.06	13.6	0.0	0.16	12.3	0.0	1.6	1	0	0	1	1	1	0	Anaphase-promoting	complex	subunit	4	WD40	domain
Sortilin-Vps10	PF15902.5	gi|564288992|ref|YP_008875217.1|	-	0.069	11.9	1.4	0.095	11.5	1.4	1.2	1	0	0	1	1	1	0	Sortilin,	neurotensin	receptor	3,
EFP_N	PF08207.12	gi|564288992|ref|YP_008875217.1|	-	0.14	12.3	0.0	0.41	10.7	0.0	1.8	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	KOW-like	domain
Rax2	PF12768.7	gi|564288992|ref|YP_008875217.1|	-	0.43	10.0	1.7	4.4	6.7	0.3	2.4	1	1	2	3	3	3	0	Cortical	protein	marker	for	cell	polarity
MoCF_biosynth	PF00994.24	gi|564288993|ref|YP_008875218.1|	-	3.8e-16	59.1	0.8	6.2e-16	58.4	0.8	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
HisKA_7TM	PF16927.5	gi|564288995|ref|YP_008875221.1|	-	3e-47	161.5	18.6	3.7e-47	161.2	18.6	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
PAS_4	PF08448.10	gi|564288995|ref|YP_008875221.1|	-	4.2e-14	52.7	2.4	6e-14	52.2	0.7	2.2	2	1	0	2	2	2	1	PAS	fold
HATPase_c	PF02518.26	gi|564288995|ref|YP_008875221.1|	-	6.9e-14	52.3	0.0	1.7e-13	51.1	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564288995|ref|YP_008875221.1|	-	2.5e-08	33.9	0.1	4.5e-08	33.1	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS	PF00989.25	gi|564288995|ref|YP_008875221.1|	-	5e-08	32.9	0.0	3.4e-07	30.3	0.0	2.3	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|564288995|ref|YP_008875221.1|	-	1.8e-07	31.3	0.0	1.6e-06	28.3	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS_8	PF13188.7	gi|564288995|ref|YP_008875221.1|	-	8.8e-06	25.6	0.5	3e-05	23.9	0.1	2.1	2	0	0	2	2	2	1	PAS	domain
HisKA	PF00512.25	gi|564288995|ref|YP_008875221.1|	-	4.7e-05	23.4	0.6	0.00016	21.6	0.6	2.0	1	1	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|564288995|ref|YP_008875221.1|	-	0.0013	18.3	0.1	0.0013	18.3	0.1	2.9	3	0	0	3	3	3	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_3	PF13589.6	gi|564288995|ref|YP_008875221.1|	-	0.0037	17.1	0.0	0.0073	16.1	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SPOB_a	PF14689.6	gi|564288995|ref|YP_008875221.1|	-	0.0046	16.6	0.6	0.014	15.1	0.6	1.8	1	1	0	1	1	1	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
PAS_7	PF12860.7	gi|564288995|ref|YP_008875221.1|	-	0.15	12.3	0.4	1.2	9.4	0.1	2.6	2	1	0	2	2	2	0	PAS	fold
adh_short	PF00106.25	gi|564288996|ref|YP_008875222.1|	-	9.3e-43	146.0	0.1	1.2e-42	145.5	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564288996|ref|YP_008875222.1|	-	3.8e-37	128.1	0.0	4.6e-37	127.8	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564288996|ref|YP_008875222.1|	-	7.5e-07	29.2	0.8	1.1e-05	25.4	0.8	2.0	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564288996|ref|YP_008875222.1|	-	7.5e-05	22.3	0.1	8.2e-05	22.2	0.1	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NUDIX	PF00293.28	gi|564288997|ref|YP_008875223.1|	-	1.1e-14	54.6	2.1	1.4e-14	54.2	2.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
HTH_10	PF04967.12	gi|564288998|ref|YP_008875224.1|	-	2e-19	69.1	0.1	5.5e-19	67.7	0.0	1.8	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_IclR	PF09339.10	gi|564288998|ref|YP_008875224.1|	-	0.00014	21.6	1.0	0.013	15.3	0.0	2.9	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288998|ref|YP_008875224.1|	-	0.00031	20.2	0.0	0.0014	18.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
BAT	PF15915.5	gi|564288998|ref|YP_008875224.1|	-	0.004	17.0	0.1	0.0057	16.5	0.1	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|564288998|ref|YP_008875224.1|	-	0.0091	15.9	0.0	0.023	14.6	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|564288998|ref|YP_008875224.1|	-	0.012	15.4	0.1	0.039	13.8	0.1	1.9	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
PuR_N	PF09182.10	gi|564288998|ref|YP_008875224.1|	-	0.015	15.2	0.0	0.048	13.6	0.0	1.8	2	0	0	2	2	2	0	Bacterial	purine	repressor,	N-terminal
HTH_20	PF12840.7	gi|564288998|ref|YP_008875224.1|	-	0.029	14.4	0.2	0.23	11.6	0.1	2.5	2	1	0	2	2	2	0	Helix-turn-helix	domain
UPF0122	PF04297.14	gi|564288998|ref|YP_008875224.1|	-	0.077	13.2	0.1	0.14	12.4	0.1	1.5	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
MarR	PF01047.22	gi|564288998|ref|YP_008875224.1|	-	0.12	12.3	0.0	0.45	10.5	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_35	PF13693.6	gi|564288998|ref|YP_008875224.1|	-	0.17	11.9	0.0	0.38	10.8	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Polyketide_cyc2	PF10604.9	gi|564288999|ref|YP_008875225.1|	-	1.4e-09	38.4	0.2	1.8e-09	38.0	0.2	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|564288999|ref|YP_008875225.1|	-	0.016	15.4	0.1	0.076	13.2	0.1	1.9	1	1	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AdoMet_Synthase	PF01941.19	gi|564289000|ref|YP_008875226.1|	-	0.023	13.5	0.1	0.028	13.2	0.1	1.1	1	0	0	1	1	1	0	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
Radical_SAM	PF04055.21	gi|564289001|ref|YP_008875227.1|	-	6.8e-19	68.9	0.0	9.3e-19	68.4	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|564289001|ref|YP_008875227.1|	-	1.3e-05	25.4	0.0	2.4e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|564289001|ref|YP_008875227.1|	-	0.00012	22.2	0.0	0.00026	21.1	0.0	1.7	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|564289001|ref|YP_008875227.1|	-	0.00069	20.1	0.0	0.0019	18.7	0.0	1.7	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
HTH_10	PF04967.12	gi|564289002|ref|YP_008875228.1|	-	1.6e-19	69.4	0.0	2.5e-19	68.8	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564289002|ref|YP_008875228.1|	-	1.6e-13	50.8	5.4	2.7e-13	50.1	5.4	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
GerE	PF00196.19	gi|564289002|ref|YP_008875228.1|	-	0.029	13.9	0.1	0.2	11.3	0.1	2.1	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
LexA_DNA_bind	PF01726.16	gi|564289002|ref|YP_008875228.1|	-	0.22	11.3	0.3	1.2	9.0	0.3	2.1	1	1	1	2	2	2	0	LexA	DNA	binding	domain
DUF2249	PF10006.9	gi|564289004|ref|YP_008875230.1|	-	1.6e-19	69.5	0.1	1.9e-19	69.3	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
YjeJ	PF15922.5	gi|564289004|ref|YP_008875230.1|	-	0.086	12.1	0.0	0.097	11.9	0.0	1.0	1	0	0	1	1	1	0	YjeJ-like
RELT	PF12606.8	gi|564289004|ref|YP_008875230.1|	-	0.19	10.8	0.0	0.27	10.2	0.0	1.2	1	0	0	1	1	1	0	Tumour	necrosis	factor	receptor	superfamily	member	19
NDUF_B12	PF08122.12	gi|564289005|ref|YP_008875231.1|	-	0.024	14.7	2.5	0.12	12.4	2.5	2.1	1	1	0	1	1	1	0	NADH-ubiquinone	oxidoreductase	B12	subunit	family
MrpF_PhaF	PF04066.13	gi|564289005|ref|YP_008875231.1|	-	0.15	12.5	8.4	0.31	11.5	4.5	2.3	1	1	1	2	2	2	0	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
HTH_20	PF12840.7	gi|564289006|ref|YP_008875232.1|	-	5.8e-10	39.1	0.0	8.1e-10	38.6	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564289006|ref|YP_008875232.1|	-	1.1e-09	38.0	0.0	1.6e-09	37.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564289006|ref|YP_008875232.1|	-	0.00021	21.1	0.0	0.00037	20.3	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|564289006|ref|YP_008875232.1|	-	0.0013	18.6	0.0	0.0022	17.9	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_12	PF08461.10	gi|564289006|ref|YP_008875232.1|	-	0.0021	18.0	0.1	0.0033	17.3	0.1	1.4	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
MazG-like	PF12643.7	gi|564289006|ref|YP_008875232.1|	-	0.0023	18.1	0.1	0.0061	16.8	0.0	1.6	1	1	1	2	2	2	1	MazG-like	family
Rrf2	PF02082.20	gi|564289006|ref|YP_008875232.1|	-	0.0089	16.4	0.0	0.013	15.8	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
MarR_2	PF12802.7	gi|564289006|ref|YP_008875232.1|	-	0.013	15.3	0.0	0.029	14.3	0.0	1.5	1	1	1	2	2	2	0	MarR	family
GntR	PF00392.21	gi|564289006|ref|YP_008875232.1|	-	0.015	15.0	0.0	0.021	14.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|564289006|ref|YP_008875232.1|	-	0.021	14.4	0.0	0.029	13.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
FtsK_gamma	PF09397.10	gi|564289006|ref|YP_008875232.1|	-	0.023	14.5	0.0	0.19	11.5	0.0	2.2	1	1	1	2	2	2	0	Ftsk	gamma	domain
HTH_DeoR	PF08220.12	gi|564289006|ref|YP_008875232.1|	-	0.026	14.3	0.1	0.087	12.6	0.0	1.8	1	1	1	2	2	2	0	DeoR-like	helix-turn-helix	domain
Phage_rep_org_N	PF09681.10	gi|564289006|ref|YP_008875232.1|	-	0.046	13.6	0.0	0.055	13.4	0.0	1.2	1	1	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF2089	PF09862.9	gi|564289006|ref|YP_008875232.1|	-	0.052	13.6	0.0	0.076	13.1	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
HTH_45	PF14947.6	gi|564289006|ref|YP_008875232.1|	-	0.059	13.4	0.0	0.077	13.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_Crp_2	PF13545.6	gi|564289006|ref|YP_008875232.1|	-	0.074	13.0	0.0	0.086	12.8	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|564289006|ref|YP_008875232.1|	-	0.077	13.3	0.0	0.11	12.9	0.0	1.3	1	1	0	1	1	1	0	Penicillinase	repressor
Aminotran_1_2	PF00155.21	gi|564289007|ref|YP_008875233.1|	-	8.3e-65	219.3	0.0	9.3e-65	219.2	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.17	gi|564289007|ref|YP_008875233.1|	-	8.8e-13	48.3	0.1	1.5e-12	47.5	0.1	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|564289007|ref|YP_008875233.1|	-	3e-09	36.6	0.0	4.9e-09	35.9	0.0	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.19	gi|564289007|ref|YP_008875233.1|	-	4.1e-05	22.7	0.0	5.9e-05	22.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.20	gi|564289007|ref|YP_008875233.1|	-	9.8e-05	21.0	0.0	0.00015	20.4	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_3	PF00202.21	gi|564289007|ref|YP_008875233.1|	-	0.016	13.9	0.0	0.027	13.1	0.0	1.3	1	0	0	1	1	1	0	Aminotransferase	class-III
ALF	PF03752.13	gi|564289007|ref|YP_008875233.1|	-	2.7	8.1	6.8	6.6	6.8	0.8	3.6	3	0	0	3	3	3	0	Short	repeats	of	unknown	function
Peptidase_S8	PF00082.22	gi|564289008|ref|YP_008875234.1|	-	2.3e-51	174.8	6.5	4.6e-51	173.8	6.5	1.5	1	0	0	1	1	1	1	Subtilase	family
PKD	PF00801.20	gi|564289008|ref|YP_008875234.1|	-	7.3e-16	57.8	3.2	2.8e-15	55.9	1.6	2.5	2	0	0	2	2	2	1	PKD	domain
Y_Y_Y	PF07495.13	gi|564289008|ref|YP_008875234.1|	-	6.8e-05	22.8	0.5	0.0044	17.0	0.1	3.0	2	1	0	2	2	2	1	Y_Y_Y	domain
REJ	PF02010.15	gi|564289008|ref|YP_008875234.1|	-	0.0036	16.2	2.6	0.31	9.8	0.1	2.1	1	1	1	2	2	2	2	REJ	domain
DUF4625	PF15418.6	gi|564289008|ref|YP_008875234.1|	-	0.029	14.6	0.1	0.062	13.5	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4625)
AroM	PF07302.11	gi|564289008|ref|YP_008875234.1|	-	0.047	13.1	0.0	0.35	10.2	0.0	2.1	2	0	0	2	2	2	0	AroM	protein
BiPBP_C	PF06832.12	gi|564289008|ref|YP_008875234.1|	-	0.1	12.7	0.0	0.68	10.0	0.0	2.2	2	0	0	2	2	2	0	Penicillin-Binding	Protein	C-terminus	Family
EMP24_GP25L	PF01105.24	gi|564289008|ref|YP_008875234.1|	-	0.19	11.6	0.0	0.36	10.8	0.0	1.4	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
Rbx_binding	PF18113.1	gi|564289008|ref|YP_008875234.1|	-	0.21	11.4	0.1	2.1	8.2	0.0	2.3	2	0	0	2	2	2	0	Rubredoxin	binding	C-terminal	domain
FctA	PF12892.7	gi|564289008|ref|YP_008875234.1|	-	8.6	7.2	8.4	38	5.1	8.4	2.2	1	1	0	1	1	1	0	Spy0128-like	isopeptide	containing	domain
Thiolase_N	PF00108.23	gi|564289009|ref|YP_008875235.1|	-	2.2e-83	279.6	0.2	3.4e-83	279.0	0.2	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564289009|ref|YP_008875235.1|	-	2.2e-33	114.5	3.8	6.7e-33	113.0	0.2	2.7	2	1	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|564289009|ref|YP_008875235.1|	-	0.0042	16.7	2.7	0.0093	15.6	0.5	2.2	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III_C	PF08541.10	gi|564289009|ref|YP_008875235.1|	-	0.012	15.8	0.1	0.077	13.2	0.1	2.2	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
TPR_MLP1_2	PF07926.12	gi|564289009|ref|YP_008875235.1|	-	0.1	12.7	0.2	0.15	12.1	0.2	1.2	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
ACP_syn_III	PF08545.10	gi|564289009|ref|YP_008875235.1|	-	0.27	11.1	2.1	8.7	6.3	0.3	2.8	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Glutaredoxin2_C	PF04399.13	gi|564289010|ref|YP_008875237.1|	-	0.064	13.1	0.1	0.064	13.1	0.1	1.0	1	0	0	1	1	1	0	Glutaredoxin	2,	C	terminal	domain
HTH_24	PF13412.6	gi|564289011|ref|YP_008875238.1|	-	4.6e-11	42.1	0.0	7.6e-10	38.2	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564289011|ref|YP_008875238.1|	-	1.1e-10	41.2	0.7	3.1e-10	39.8	0.3	1.9	2	0	0	2	2	1	1	MarR	family
MarR	PF01047.22	gi|564289011|ref|YP_008875238.1|	-	4.3e-08	33.0	0.0	1.2e-07	31.5	0.0	1.7	2	0	0	2	2	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564289011|ref|YP_008875238.1|	-	4.4e-07	29.8	0.0	1.2e-06	28.4	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564289011|ref|YP_008875238.1|	-	2.1e-06	28.1	0.1	4.6e-06	27.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|564289011|ref|YP_008875238.1|	-	0.00022	21.2	0.1	0.00056	19.9	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|564289011|ref|YP_008875238.1|	-	0.00031	20.7	0.0	0.00056	19.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_13	PF11972.8	gi|564289011|ref|YP_008875238.1|	-	0.00037	20.5	0.9	0.00074	19.5	0.1	1.8	2	0	0	2	2	1	1	HTH	DNA	binding	domain
Mnd1	PF03962.15	gi|564289011|ref|YP_008875238.1|	-	0.00039	20.6	0.0	0.00074	19.8	0.0	1.4	1	0	0	1	1	1	1	Mnd1	HTH	domain
TrmB	PF01978.19	gi|564289011|ref|YP_008875238.1|	-	0.00069	19.4	0.1	0.0013	18.6	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564289011|ref|YP_008875238.1|	-	0.00093	18.9	0.0	0.0019	18.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564289011|ref|YP_008875238.1|	-	0.001	18.9	0.0	0.0021	17.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|564289011|ref|YP_008875238.1|	-	0.0012	18.8	0.0	0.002	18.0	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
SMC_ScpB	PF04079.16	gi|564289011|ref|YP_008875238.1|	-	0.0018	18.0	0.1	0.0029	17.2	0.1	1.4	1	0	0	1	1	1	1	Segregation	and	condensation	complex	subunit	ScpB
Fe_dep_repress	PF01325.19	gi|564289011|ref|YP_008875238.1|	-	0.0023	18.1	0.0	0.0053	16.9	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.6	gi|564289011|ref|YP_008875238.1|	-	0.0023	17.7	0.6	0.28	11.0	0.1	2.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
DUF4423	PF14394.6	gi|564289011|ref|YP_008875238.1|	-	0.0024	17.6	0.0	0.0037	17.0	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
NMD3	PF04981.13	gi|564289011|ref|YP_008875238.1|	-	0.0041	16.6	0.0	0.0073	15.8	0.0	1.3	1	0	0	1	1	1	1	NMD3	family
GntR	PF00392.21	gi|564289011|ref|YP_008875238.1|	-	0.0058	16.3	0.1	0.016	14.8	0.1	1.8	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	gntR	family
Rrf2	PF02082.20	gi|564289011|ref|YP_008875238.1|	-	0.0063	16.8	0.0	0.015	15.6	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
TetR_C_7	PF14246.6	gi|564289011|ref|YP_008875238.1|	-	0.012	15.7	0.0	0.023	14.7	0.0	1.5	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
HemN_C	PF06969.16	gi|564289011|ref|YP_008875238.1|	-	0.016	15.2	0.0	0.035	14.2	0.0	1.6	1	0	0	1	1	1	0	HemN	C-terminal	domain
HTH_23	PF13384.6	gi|564289011|ref|YP_008875238.1|	-	0.023	14.5	0.0	0.052	13.4	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF4364	PF14277.6	gi|564289011|ref|YP_008875238.1|	-	0.032	14.0	0.0	0.046	13.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
AbiEi_4	PF13338.6	gi|564289011|ref|YP_008875238.1|	-	0.044	13.9	0.6	0.12	12.6	0.1	2.0	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
HTH_1	PF00126.27	gi|564289011|ref|YP_008875238.1|	-	0.074	13.0	0.0	0.2	11.6	0.0	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Rio2_N	PF09202.11	gi|564289011|ref|YP_008875238.1|	-	0.075	13.3	0.0	0.13	12.5	0.0	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_3	PF01381.22	gi|564289011|ref|YP_008875238.1|	-	0.11	12.6	0.1	0.46	10.6	0.1	1.9	1	1	1	2	2	2	0	Helix-turn-helix
LacI	PF00356.21	gi|564289011|ref|YP_008875238.1|	-	0.13	12.1	0.7	0.66	9.8	0.1	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
LexA_DNA_bind	PF01726.16	gi|564289011|ref|YP_008875238.1|	-	0.14	11.9	0.0	0.29	10.9	0.0	1.5	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Mrr_N	PF14338.6	gi|564289011|ref|YP_008875238.1|	-	0.18	11.9	0.0	0.66	10.1	0.0	1.9	1	1	0	1	1	1	0	Mrr	N-terminal	domain
HTH_12	PF08461.10	gi|564289011|ref|YP_008875238.1|	-	0.19	11.7	0.1	0.44	10.5	0.1	1.6	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
FaeA	PF04703.12	gi|564289011|ref|YP_008875238.1|	-	0.39	11.1	2.4	0.52	10.7	0.0	2.4	3	0	0	3	3	2	0	FaeA-like	protein
Metallophos	PF00149.28	gi|564289012|ref|YP_008875239.1|	-	1.9e-07	31.8	0.1	9e-07	29.6	0.1	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
DUF3463	PF11946.8	gi|564289012|ref|YP_008875239.1|	-	0.25	11.2	0.0	0.41	10.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3463)
Amino_oxidase	PF01593.24	gi|564289014|ref|YP_008875241.1|	-	1.6e-45	156.2	0.3	2e-45	155.9	0.3	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|564289014|ref|YP_008875241.1|	-	3.4e-16	59.2	0.4	9.1e-16	57.9	0.4	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564289014|ref|YP_008875241.1|	-	3.8e-14	53.1	4.1	2.9e-06	27.1	0.1	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564289014|ref|YP_008875241.1|	-	7e-10	38.2	0.1	2.2e-05	23.4	0.0	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|564289014|ref|YP_008875241.1|	-	5.9e-09	35.5	3.3	4.6e-07	29.3	1.3	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564289014|ref|YP_008875241.1|	-	1.9e-07	30.7	0.6	8.2e-05	22.0	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564289014|ref|YP_008875241.1|	-	9.8e-06	25.0	0.9	9.3e-05	21.8	0.2	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564289014|ref|YP_008875241.1|	-	1e-05	25.1	2.9	1.3e-05	24.8	0.7	2.1	2	1	0	3	3	3	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|564289014|ref|YP_008875241.1|	-	4.3e-05	24.0	0.7	0.0019	18.7	0.3	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|564289014|ref|YP_008875241.1|	-	5.2e-05	22.6	0.3	0.00014	21.2	0.1	1.7	2	0	0	2	2	2	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|564289014|ref|YP_008875241.1|	-	0.0011	18.3	0.3	0.0021	17.4	0.3	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
GIDA	PF01134.22	gi|564289014|ref|YP_008875241.1|	-	0.0024	17.1	0.6	0.0043	16.2	0.6	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
MCRA	PF06100.11	gi|564289014|ref|YP_008875241.1|	-	0.027	13.3	0.0	0.073	11.9	0.0	1.6	2	0	0	2	2	2	0	MCRA	family
YjeF_N	PF03853.15	gi|564289014|ref|YP_008875241.1|	-	0.08	12.8	0.1	0.18	11.7	0.1	1.5	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
NAD_binding_7	PF13241.6	gi|564289014|ref|YP_008875241.1|	-	0.1	13.0	0.0	0.3	11.6	0.0	1.8	2	0	0	2	2	1	0	Putative	NAD(P)-binding
Trp_halogenase	PF04820.14	gi|564289014|ref|YP_008875241.1|	-	0.1	11.4	0.2	0.16	10.8	0.2	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|564289014|ref|YP_008875241.1|	-	0.12	11.6	0.5	1.8	7.7	0.2	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FMO-like	PF00743.19	gi|564289014|ref|YP_008875241.1|	-	0.13	10.6	0.0	0.18	10.2	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
NAD_binding_9	PF13454.6	gi|564289014|ref|YP_008875241.1|	-	0.19	11.7	3.3	0.3	11.0	0.2	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|564289014|ref|YP_008875241.1|	-	0.27	10.2	3.7	0.095	11.7	0.3	1.8	2	0	0	2	2	2	0	Lycopene	cyclase	protein
PALP	PF00291.25	gi|564289015|ref|YP_008875242.1|	-	1.4e-59	201.9	4.1	1.7e-59	201.6	4.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DZR	PF12773.7	gi|564289015|ref|YP_008875242.1|	-	0.045	13.8	0.6	0.087	12.9	0.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564289015|ref|YP_008875242.1|	-	0.046	13.4	1.3	0.082	12.7	1.3	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF1272	PF06906.11	gi|564289015|ref|YP_008875242.1|	-	0.062	13.4	1.1	0.12	12.4	1.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Zn-ribbon_8	PF09723.10	gi|564289015|ref|YP_008875242.1|	-	0.13	12.4	0.3	0.65	10.2	0.9	1.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|564289015|ref|YP_008875242.1|	-	0.16	11.3	2.9	0.44	9.9	2.9	1.7	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Preseq_ALAS	PF09029.10	gi|564289015|ref|YP_008875242.1|	-	0.16	12.4	0.0	0.31	11.6	0.0	1.4	1	0	0	1	1	1	0	5-aminolevulinate	synthase	presequence
zinc_ribbon_15	PF17032.5	gi|564289015|ref|YP_008875242.1|	-	0.17	12.6	0.8	0.25	12.1	0.8	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
HypA	PF01155.19	gi|564289015|ref|YP_008875242.1|	-	0.22	11.6	0.5	0.47	10.5	0.5	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Rubredoxin_2	PF18073.1	gi|564289015|ref|YP_008875242.1|	-	0.26	11.0	1.2	0.45	10.3	1.2	1.3	1	0	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-ribbon_3	PF13248.6	gi|564289015|ref|YP_008875242.1|	-	0.41	10.1	2.0	0.98	8.9	2.0	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
ADH_zinc_N	PF00107.26	gi|564289016|ref|YP_008875243.1|	-	4.6e-22	78.4	1.8	7.6e-22	77.7	0.4	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|564289016|ref|YP_008875243.1|	-	1.2e-21	76.6	0.2	2.3e-21	75.7	0.2	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N_2	PF13602.6	gi|564289016|ref|YP_008875243.1|	-	1.2e-15	58.7	0.1	2.3e-15	57.8	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NADH_4Fe-4S	PF10589.9	gi|564289016|ref|YP_008875243.1|	-	0.0057	16.7	0.1	0.011	15.8	0.1	1.5	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Usp	PF00582.26	gi|564289017|ref|YP_008875244.1|	-	7.6e-26	91.3	1.3	8.6e-26	91.1	1.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|564289017|ref|YP_008875244.1|	-	0.027	13.9	0.2	0.035	13.5	0.2	1.2	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Usp	PF00582.26	gi|564289018|ref|YP_008875245.1|	-	2.5e-60	203.1	3.5	2.1e-30	106.1	0.1	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
HTH_40	PF14493.6	gi|564289018|ref|YP_008875245.1|	-	0.052	14.0	0.0	6.6	7.3	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
DnaJ	PF00226.31	gi|564289019|ref|YP_008875246.1|	-	5.9e-09	35.9	0.0	1e-08	35.2	0.0	1.4	1	0	0	1	1	1	1	DnaJ	domain
DUF4947	PF16305.5	gi|564289019|ref|YP_008875246.1|	-	0.011	15.7	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4947)
PetG	PF02529.15	gi|564289019|ref|YP_008875246.1|	-	0.61	10.0	3.8	1.2	9.0	3.8	1.4	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	5
PAC2	PF09754.9	gi|564289020|ref|YP_008875247.1|	-	1.7e-52	178.5	0.1	2e-52	178.3	0.1	1.0	1	0	0	1	1	1	1	PAC2	family
NAD_binding_10	PF13460.6	gi|564289020|ref|YP_008875247.1|	-	0.015	15.2	0.0	0.026	14.4	0.0	1.3	1	0	0	1	1	1	0	NAD(P)H-binding
Nop10p	PF04135.12	gi|564289021|ref|YP_008875248.1|	-	1.7e-23	82.4	0.3	1.9e-23	82.2	0.3	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
EIF_2_alpha	PF07541.12	gi|564289022|ref|YP_008875249.1|	-	1.8e-28	98.9	0.0	3.2e-28	98.1	0.0	1.4	1	0	0	1	1	1	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.23	gi|564289022|ref|YP_008875249.1|	-	2.3e-14	53.5	0.7	6e-14	52.1	0.7	1.6	1	0	0	1	1	1	1	S1	RNA	binding	domain
cwf21	PF08312.12	gi|564289022|ref|YP_008875249.1|	-	0.11	12.6	0.1	0.11	12.6	0.1	2.2	2	0	0	2	2	2	0	cwf21	domain
DUF1494	PF07379.11	gi|564289022|ref|YP_008875249.1|	-	0.18	11.6	0.1	0.77	9.6	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1494)
Ribosomal_S27e	PF01667.17	gi|564289023|ref|YP_008875250.1|	-	3.3e-19	68.3	0.5	3.4e-19	68.3	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.12	gi|564289023|ref|YP_008875250.1|	-	0.00012	21.5	1.0	0.00017	21.0	1.0	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
DUF4969	PF16339.5	gi|564289023|ref|YP_008875250.1|	-	0.012	15.9	0.2	0.014	15.8	0.2	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4969)
HypA	PF01155.19	gi|564289023|ref|YP_008875250.1|	-	0.022	14.8	0.5	0.025	14.6	0.5	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_4	PF13717.6	gi|564289023|ref|YP_008875250.1|	-	0.023	14.6	2.8	0.28	11.2	2.8	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
eIF-5_eIF-2B	PF01873.17	gi|564289023|ref|YP_008875250.1|	-	0.048	13.5	1.5	0.064	13.1	1.5	1.2	1	0	0	1	1	1	0	Domain	found	in	IF2B/IF5
CpXC	PF14353.6	gi|564289023|ref|YP_008875250.1|	-	0.056	13.5	1.5	1.4	9.0	0.1	2.0	1	1	1	2	2	2	0	CpXC	protein
zf-ribbon_3	PF13248.6	gi|564289023|ref|YP_008875250.1|	-	0.056	12.9	2.0	2.8	7.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|564289023|ref|YP_008875250.1|	-	0.062	13.3	0.3	0.076	13.1	0.3	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289023|ref|YP_008875250.1|	-	0.067	13.1	0.3	0.096	12.6	0.3	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|564289023|ref|YP_008875250.1|	-	0.14	12.3	3.3	0.24	11.6	3.3	1.4	1	1	0	1	1	1	0	Zinc	ribbon	domain
DUF3797	PF12677.7	gi|564289023|ref|YP_008875250.1|	-	0.26	11.2	1.8	1.9	8.5	0.3	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
TFIIS_C	PF01096.18	gi|564289023|ref|YP_008875250.1|	-	0.31	10.9	3.1	16	5.4	3.2	2.1	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Ribosomal_L44	PF00935.19	gi|564289024|ref|YP_008875251.1|	-	1.5e-26	92.7	1.7	1.8e-26	92.4	1.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L44
zf-ribbon_3	PF13248.6	gi|564289024|ref|YP_008875251.1|	-	0.00046	19.5	0.6	0.84	9.1	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|564289024|ref|YP_008875251.1|	-	0.0037	17.1	4.1	0.4	10.6	0.5	2.3	2	0	0	2	2	2	2	SprT-like	zinc	ribbon	domain
WCCH	PF03716.14	gi|564289024|ref|YP_008875251.1|	-	0.015	15.0	2.8	0.026	14.2	2.8	1.4	1	0	0	1	1	1	0	WCCH	motif
zinc_ribbon_10	PF10058.9	gi|564289024|ref|YP_008875251.1|	-	0.023	14.4	0.9	1.5	8.6	0.0	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Terminase_GpA	PF05876.12	gi|564289024|ref|YP_008875251.1|	-	0.04	12.5	1.0	0.054	12.1	1.0	1.3	1	1	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-LITAF-like	PF10601.9	gi|564289024|ref|YP_008875251.1|	-	0.083	13.2	2.8	0.58	10.5	0.2	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564289024|ref|YP_008875251.1|	-	0.12	12.5	4.6	5.1	7.3	0.4	2.4	2	1	0	2	2	2	0	Zinc	ribbon	domain
F-112	PF09645.10	gi|564289024|ref|YP_008875251.1|	-	0.17	12.0	0.1	0.23	11.6	0.1	1.2	1	0	0	1	1	1	0	F-112	protein
zf-Mss51	PF13824.6	gi|564289024|ref|YP_008875251.1|	-	0.25	11.5	4.6	0.4	10.8	4.6	1.4	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF2298	PF10060.9	gi|564289027|ref|YP_008875254.1|	-	2.6e-142	475.0	32.4	2.6e-142	475.0	32.4	1.4	2	0	0	2	2	2	1	Uncharacterized	membrane	protein	(DUF2298)
Glycos_transf_2	PF00535.26	gi|564289028|ref|YP_008875255.1|	-	4.2e-12	46.2	0.0	5.4e-12	45.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289028|ref|YP_008875255.1|	-	0.077	12.9	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564289028|ref|YP_008875255.1|	-	0.089	12.3	0.0	0.12	11.8	0.0	1.2	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
GtrA	PF04138.14	gi|564289029|ref|YP_008875256.1|	-	2e-21	76.4	7.1	2.7e-21	76.0	7.1	1.2	1	0	0	1	1	1	1	GtrA-like	protein
ABC2_membrane_5	PF13346.6	gi|564289030|ref|YP_008875257.1|	-	0.071	12.7	0.1	0.12	11.9	0.1	1.3	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Pribosyltran	PF00156.27	gi|564289031|ref|YP_008875258.1|	-	1.6e-12	47.2	1.6	2.1e-12	46.9	1.6	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|564289031|ref|YP_008875258.1|	-	0.0012	18.3	0.1	0.0017	17.8	0.1	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pilin_N	PF07790.11	gi|564289034|ref|YP_008875261.1|	-	2.1e-27	95.8	2.2	3.1e-27	95.3	1.0	1.9	1	1	1	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
DUF4229	PF14012.6	gi|564289035|ref|YP_008875262.1|	-	0.0026	17.8	1.2	0.0047	17.0	1.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4229)
Pilin_N	PF07790.11	gi|564289036|ref|YP_008875263.1|	-	2e-26	92.7	0.9	4.4e-26	91.6	0.9	1.5	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Proton_antipo_M	PF00361.20	gi|564289037|ref|YP_008875264.1|	-	1e-39	136.5	11.7	2.8e-39	135.1	11.7	1.7	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_M	PF00361.20	gi|564289038|ref|YP_008875265.1|	-	8.7e-59	199.1	14.0	1.6e-58	198.2	14.0	1.5	1	0	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|564289038|ref|YP_008875265.1|	-	8.2e-06	25.8	0.2	2.5e-05	24.3	0.2	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_M	PF00361.20	gi|564289039|ref|YP_008875266.1|	-	9.5e-60	202.3	22.8	9.5e-60	202.3	22.8	1.8	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
NADHdeh_related	PF10125.9	gi|564289039|ref|YP_008875266.1|	-	4.2e-08	32.8	10.5	4.2e-08	32.8	10.5	2.9	2	1	0	2	2	2	1	NADH	dehydrogenase	I,	subunit	N	related	protein
Proton_antipo_N	PF00662.20	gi|564289039|ref|YP_008875266.1|	-	0.29	11.2	0.1	0.29	11.2	0.1	3.3	4	0	0	4	4	4	0	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.24	gi|564289040|ref|YP_008875267.1|	-	1e-27	95.8	1.1	1.2e-27	95.6	1.1	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
GPDPase_memb	PF10110.9	gi|564289040|ref|YP_008875267.1|	-	0.0038	16.0	4.3	0.0052	15.6	4.3	1.2	1	0	0	1	1	1	1	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
DUF2207	PF09972.9	gi|564289040|ref|YP_008875267.1|	-	0.21	10.3	1.1	0.25	10.1	1.1	1.2	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
MnhB	PF04039.13	gi|564289041|ref|YP_008875268.1|	-	1.2e-23	83.8	17.3	1.2e-23	83.8	17.3	1.4	1	1	0	1	1	1	1	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF4040	PF13244.6	gi|564289042|ref|YP_008875269.1|	-	5.4e-18	64.9	10.8	5.4e-18	64.9	10.8	2.7	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4040)
Oxidored_q3	PF00499.20	gi|564289042|ref|YP_008875269.1|	-	0.00015	21.5	8.3	0.00021	21.0	8.3	1.3	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF5536	PF17688.1	gi|564289042|ref|YP_008875269.1|	-	0.015	15.2	0.1	0.022	14.6	0.1	1.3	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5536)
PhaG_MnhG_YufB	PF03334.14	gi|564289043|ref|YP_008875270.1|	-	3.1e-25	88.2	9.0	3.6e-25	88.0	9.0	1.0	1	0	0	1	1	1	1	Na+/H+	antiporter	subunit
MrpF_PhaF	PF04066.13	gi|564289044|ref|YP_008875271.1|	-	8.7e-19	67.7	2.4	8.7e-19	67.7	2.4	2.0	2	0	0	2	2	2	1	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
DUF2105	PF09878.9	gi|564289044|ref|YP_008875271.1|	-	0.025	14.3	1.3	0.028	14.2	1.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2105)
3Beta_HSD	PF01073.19	gi|564289044|ref|YP_008875271.1|	-	0.046	12.7	0.0	0.055	12.5	0.0	1.1	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Caps_synth_CapC	PF14102.6	gi|564289044|ref|YP_008875271.1|	-	0.15	12.5	3.7	2	8.9	3.8	1.9	1	1	0	1	1	1	0	Capsule	biosynthesis	CapC
MNHE	PF01899.16	gi|564289045|ref|YP_008875272.1|	-	4.7e-30	104.3	0.2	6.8e-30	103.7	0.2	1.3	1	0	0	1	1	1	1	Na+/H+	ion	antiporter	subunit
DFP	PF04127.15	gi|564289046|ref|YP_008875273.1|	-	3.9e-50	170.3	5.5	9.1e-50	169.1	0.8	2.5	3	0	0	3	3	3	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.19	gi|564289046|ref|YP_008875273.1|	-	1.8e-33	115.5	0.3	3.1e-33	114.7	0.3	1.4	1	0	0	1	1	1	1	Flavoprotein
PALP	PF00291.25	gi|564289046|ref|YP_008875273.1|	-	0.016	14.7	2.2	0.016	14.7	2.2	2.5	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
DUF58	PF01882.18	gi|564289048|ref|YP_008875275.1|	-	5.2e-13	49.1	0.8	1.9e-12	47.3	0.0	2.4	3	0	0	3	3	3	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|564289048|ref|YP_008875275.1|	-	6.7e-11	42.3	3.0	8.2e-11	42.1	0.6	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|564289048|ref|YP_008875275.1|	-	5.6e-06	26.5	2.3	7.6e-06	26.1	0.3	2.3	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
TRAP_beta	PF05753.14	gi|564289048|ref|YP_008875275.1|	-	0.00012	21.5	0.0	0.00022	20.7	0.0	1.3	1	0	0	1	1	1	1	Translocon-associated	protein	beta	(TRAPB)
CARDB	PF07705.11	gi|564289048|ref|YP_008875275.1|	-	0.0003	21.0	0.0	0.00072	19.8	0.0	1.6	1	0	0	1	1	1	1	CARDB
DUF4129	PF13559.6	gi|564291297|ref|YP_008875277.1|	-	1.3e-11	44.6	5.8	1.3e-11	44.6	5.8	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4129)
Peptidase_M48	PF01435.18	gi|564289050|ref|YP_008875278.1|	-	5.8e-28	98.0	0.0	5e-16	59.1	0.0	2.1	2	0	0	2	2	2	2	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|564289050|ref|YP_008875278.1|	-	1.5e-05	24.4	0.7	0.00014	21.2	0.5	2.2	1	1	1	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|564289050|ref|YP_008875278.1|	-	0.062	13.2	0.0	0.087	12.7	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
DUF4157	PF13699.6	gi|564289050|ref|YP_008875278.1|	-	0.087	13.1	0.1	0.2	11.9	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
Pyr_redox_2	PF07992.14	gi|564289051|ref|YP_008875279.1|	-	3.4e-14	52.8	0.7	4.4e-07	29.4	0.0	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564289051|ref|YP_008875279.1|	-	1.5e-10	40.8	3.6	2.3e-05	23.7	1.7	2.4	1	1	2	3	3	3	2	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|564289051|ref|YP_008875279.1|	-	5.9e-06	25.8	0.1	1.6e-05	24.3	0.1	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|564289051|ref|YP_008875279.1|	-	3.4e-05	23.6	7.3	0.064	12.8	4.3	2.8	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|564289051|ref|YP_008875279.1|	-	9.1e-05	21.7	0.1	0.00017	20.8	0.1	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.12	gi|564289051|ref|YP_008875279.1|	-	0.00011	21.4	0.0	0.014	14.5	0.1	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
FAD_oxidored	PF12831.7	gi|564289051|ref|YP_008875279.1|	-	0.00023	20.6	1.5	0.00039	19.9	1.5	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|564289051|ref|YP_008875279.1|	-	0.00025	21.2	0.2	0.0053	17.0	0.1	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|564289051|ref|YP_008875279.1|	-	0.00025	19.9	0.0	0.0049	15.6	0.1	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Thi4	PF01946.17	gi|564289051|ref|YP_008875279.1|	-	0.002	17.4	0.3	0.0039	16.4	0.3	1.4	1	0	0	1	1	1	1	Thi4	family
Trp_halogenase	PF04820.14	gi|564289051|ref|YP_008875279.1|	-	0.0028	16.6	0.2	1.3	7.8	0.6	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
AlaDh_PNT_C	PF01262.21	gi|564289051|ref|YP_008875279.1|	-	0.0088	15.4	0.0	0.015	14.6	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|564289051|ref|YP_008875279.1|	-	0.017	15.1	2.8	0.38	10.7	0.0	2.5	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|564289051|ref|YP_008875279.1|	-	0.027	15.0	0.2	0.076	13.6	0.2	1.8	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|564289051|ref|YP_008875279.1|	-	0.061	12.6	1.4	0.14	11.4	1.1	1.6	1	1	1	2	2	2	0	FAD	binding	domain
3HCDH_N	PF02737.18	gi|564289051|ref|YP_008875279.1|	-	0.088	12.7	0.1	2.3	8.1	0.1	2.2	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AAA	PF00004.29	gi|564289052|ref|YP_008875280.1|	-	2.6e-44	150.9	0.1	2.6e-44	150.9	0.1	2.2	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|564289052|ref|YP_008875280.1|	-	7.2e-12	44.9	0.9	2.8e-11	43.1	0.9	2.0	1	0	0	1	1	1	1	AAA+	lid	domain
AAA_2	PF07724.14	gi|564289052|ref|YP_008875280.1|	-	2.3e-09	37.6	2.1	3.5e-09	37.0	0.0	2.5	3	0	0	3	3	1	1	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|564289052|ref|YP_008875280.1|	-	1.8e-07	31.0	0.1	4.2e-07	29.8	0.0	1.7	2	0	0	2	2	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|564289052|ref|YP_008875280.1|	-	8.9e-06	25.7	0.3	0.00012	22.0	0.3	2.7	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.6	gi|564289052|ref|YP_008875280.1|	-	9.9e-06	26.0	4.5	0.022	15.2	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|564289052|ref|YP_008875280.1|	-	1.5e-05	25.4	8.3	0.00026	21.4	0.0	3.7	3	2	0	4	4	4	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289052|ref|YP_008875280.1|	-	4.7e-05	23.7	2.5	0.0012	19.1	0.0	2.9	2	1	1	3	3	2	1	AAA	domain
Prot_ATP_ID_OB	PF16450.5	gi|564289052|ref|YP_008875280.1|	-	0.00013	21.8	0.6	0.00029	20.7	0.1	1.9	2	0	0	2	2	1	1	Proteasomal	ATPase	OB	C-terminal	domain
GrpE	PF01025.19	gi|564289052|ref|YP_008875280.1|	-	0.00024	20.8	6.9	0.00024	20.8	6.9	2.1	2	0	0	2	2	1	1	GrpE
TIP49	PF06068.13	gi|564289052|ref|YP_008875280.1|	-	0.00027	20.3	0.9	0.00092	18.5	0.0	2.3	3	1	0	3	3	2	1	TIP49	P-loop	domain
DUF815	PF05673.13	gi|564289052|ref|YP_008875280.1|	-	0.00047	19.4	0.0	0.0013	17.9	0.0	1.9	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_33	PF13671.6	gi|564289052|ref|YP_008875280.1|	-	0.00057	20.1	0.3	0.0023	18.1	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|564289052|ref|YP_008875280.1|	-	0.00064	19.3	1.6	0.057	12.9	0.0	2.6	2	1	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_14	PF13173.6	gi|564289052|ref|YP_008875280.1|	-	0.00066	19.7	0.4	0.0024	17.9	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
TUDOR	PF00567.24	gi|564289052|ref|YP_008875280.1|	-	0.0011	19.0	0.1	0.0036	17.3	0.1	1.9	1	0	0	1	1	1	1	Tudor	domain
NACHT	PF05729.12	gi|564289052|ref|YP_008875280.1|	-	0.0013	18.6	0.2	0.042	13.8	0.0	2.5	1	1	0	2	2	2	1	NACHT	domain
AAA_3	PF07726.11	gi|564289052|ref|YP_008875280.1|	-	0.002	18.0	0.1	0.033	14.0	0.0	2.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|564289052|ref|YP_008875280.1|	-	0.0023	17.6	0.2	0.039	13.7	0.2	2.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|564289052|ref|YP_008875280.1|	-	0.0024	17.3	0.0	0.0074	15.7	0.0	1.8	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.6	gi|564289052|ref|YP_008875280.1|	-	0.0024	18.4	2.8	0.02	15.5	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_11	PF13086.6	gi|564289052|ref|YP_008875280.1|	-	0.0029	17.5	2.1	0.11	12.2	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|564289052|ref|YP_008875280.1|	-	0.0047	16.1	0.0	0.033	13.4	0.0	2.4	2	1	0	2	2	2	1	NB-ARC	domain
IstB_IS21	PF01695.17	gi|564289052|ref|YP_008875280.1|	-	0.0051	16.6	0.0	0.014	15.1	0.0	1.8	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
TsaE	PF02367.17	gi|564289052|ref|YP_008875280.1|	-	0.0096	15.9	0.0	0.019	14.9	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Fmp27_WPPW	PF10359.9	gi|564289052|ref|YP_008875280.1|	-	0.012	14.5	5.7	0.023	13.6	5.7	1.5	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
RNA_helicase	PF00910.22	gi|564289052|ref|YP_008875280.1|	-	0.017	15.5	0.0	0.053	13.9	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
AAA_28	PF13521.6	gi|564289052|ref|YP_008875280.1|	-	0.018	15.3	2.0	0.03	14.6	0.0	2.5	3	0	0	3	3	1	0	AAA	domain
Torsin	PF06309.11	gi|564289052|ref|YP_008875280.1|	-	0.019	15.0	0.1	0.059	13.5	0.0	1.8	2	0	0	2	2	1	0	Torsin
Atg14	PF10186.9	gi|564289052|ref|YP_008875280.1|	-	0.02	14.0	1.9	0.029	13.5	1.9	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF2334	PF10096.9	gi|564289052|ref|YP_008875280.1|	-	0.027	14.1	0.1	0.048	13.3	0.1	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
CPT	PF07931.12	gi|564289052|ref|YP_008875280.1|	-	0.029	14.2	0.1	0.069	13.0	0.0	1.8	2	0	0	2	2	1	0	Chloramphenicol	phosphotransferase-like	protein
AAA_30	PF13604.6	gi|564289052|ref|YP_008875280.1|	-	0.039	13.7	0.3	0.14	11.8	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
Fungal_TACC	PF12709.7	gi|564289052|ref|YP_008875280.1|	-	0.04	14.4	4.4	0.14	12.6	4.4	2.0	1	0	0	1	1	1	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
Cep57_CLD_2	PF14197.6	gi|564289052|ref|YP_008875280.1|	-	0.042	13.9	9.7	0.11	12.6	9.7	1.7	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
NTPase_1	PF03266.15	gi|564289052|ref|YP_008875280.1|	-	0.043	13.7	3.2	0.79	9.6	0.1	3.0	2	2	1	3	3	3	0	NTPase
AAA_24	PF13479.6	gi|564289052|ref|YP_008875280.1|	-	0.088	12.5	0.1	0.088	12.5	0.1	2.5	3	2	0	3	3	2	0	AAA	domain
bZIP_1	PF00170.21	gi|564289052|ref|YP_008875280.1|	-	0.095	12.8	13.5	0.18	11.9	2.7	2.7	1	1	1	2	2	2	0	bZIP	transcription	factor
ABC_tran	PF00005.27	gi|564289052|ref|YP_008875280.1|	-	0.12	12.9	6.6	0.25	11.9	0.0	3.1	2	1	0	2	2	1	0	ABC	transporter
DUF4438	PF14505.6	gi|564289052|ref|YP_008875280.1|	-	0.13	11.2	0.1	0.2	10.6	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4438)
ATPase	PF06745.13	gi|564289052|ref|YP_008875280.1|	-	0.24	10.7	7.0	0.94	8.8	0.0	3.4	2	1	1	3	3	3	0	KaiC
DUF2075	PF09848.9	gi|564289052|ref|YP_008875280.1|	-	0.5	9.5	0.0	0.5	9.5	0.0	2.5	3	0	0	3	3	2	0	Uncharacterized	conserved	protein	(DUF2075)
ADIP	PF11559.8	gi|564289052|ref|YP_008875280.1|	-	0.67	10.0	11.3	0.13	12.4	7.4	1.7	2	0	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
TMF_TATA_bd	PF12325.8	gi|564289052|ref|YP_008875280.1|	-	0.68	10.2	11.4	0.49	10.6	8.3	2.3	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
AAA_25	PF13481.6	gi|564289052|ref|YP_008875280.1|	-	0.86	9.2	11.5	0.67	9.5	0.1	3.8	3	2	1	4	4	4	0	AAA	domain
FlaC_arch	PF05377.11	gi|564289052|ref|YP_008875280.1|	-	1.3	9.5	6.4	43	4.6	0.0	3.4	2	1	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
GAS	PF13851.6	gi|564289052|ref|YP_008875280.1|	-	1.9	7.8	14.4	3.8	6.8	14.2	1.5	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Dzip-like_N	PF13815.6	gi|564289052|ref|YP_008875280.1|	-	1.9	8.5	7.4	6.8	6.7	7.4	2.0	1	0	0	1	1	1	0	Iguana/Dzip1-like	DAZ-interacting	protein	N-terminal
DUF4407	PF14362.6	gi|564289052|ref|YP_008875280.1|	-	2	7.7	7.7	0.92	8.8	5.4	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
SlyX	PF04102.12	gi|564289052|ref|YP_008875280.1|	-	2.6	8.7	11.5	96	3.7	10.5	3.1	1	1	0	1	1	1	0	SlyX
ZapB	PF06005.12	gi|564289052|ref|YP_008875280.1|	-	4.7	7.7	17.0	32	5.1	15.3	2.9	2	1	0	2	2	1	0	Cell	division	protein	ZapB
Csm1_N	PF18504.1	gi|564289052|ref|YP_008875280.1|	-	8.2	6.9	13.0	3.3	8.1	3.8	3.2	2	1	1	3	3	2	0	Csm1	N-terminal	domain
DUF420	PF04238.12	gi|564289053|ref|YP_008875281.1|	-	2.4e-32	112.0	12.8	2.4e-32	112.0	12.8	1.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.9	gi|564289053|ref|YP_008875281.1|	-	0.0019	18.4	4.7	0.0019	18.4	4.7	2.3	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2306)
YesK	PF14150.6	gi|564289053|ref|YP_008875281.1|	-	0.025	14.8	0.6	0.025	14.8	0.6	3.0	3	1	1	4	4	4	0	YesK-like	protein
Cytochrom_B561	PF03188.16	gi|564289053|ref|YP_008875281.1|	-	0.17	12.1	16.3	0.11	12.6	6.8	2.4	2	1	1	3	3	3	0	Eukaryotic	cytochrome	b561
AC_N	PF16214.5	gi|564289053|ref|YP_008875281.1|	-	0.26	10.4	8.8	0.32	10.1	8.8	1.1	1	0	0	1	1	1	0	Adenylyl	cyclase	N-terminal	extracellular	and	transmembrane	region
HD	PF01966.22	gi|564289054|ref|YP_008875282.1|	-	1.4e-10	41.4	1.4	4.6e-10	39.8	1.4	2.0	1	0	0	1	1	1	1	HD	domain
Clp_N	PF02861.20	gi|564289054|ref|YP_008875282.1|	-	0.044	13.9	2.0	6.7	6.9	0.0	3.2	3	0	0	3	3	3	0	Clp	amino	terminal	domain,	pathogenicity	island	component
ELYS	PF13934.6	gi|564289054|ref|YP_008875282.1|	-	0.078	12.9	0.4	0.15	12.0	0.4	1.4	1	0	0	1	1	1	0	Nuclear	pore	complex	assembly
Amidohydro_1	PF01979.20	gi|564289055|ref|YP_008875283.1|	-	1.3e-26	93.7	0.0	2e-17	63.5	0.0	2.1	1	1	1	2	2	2	2	Amidohydrolase	family
A_deaminase	PF00962.22	gi|564289055|ref|YP_008875283.1|	-	7.4e-10	38.7	0.0	1.1e-09	38.1	0.0	1.1	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.11	gi|564289055|ref|YP_008875283.1|	-	2.2e-06	27.4	6.7	2.5e-05	24.0	1.5	2.4	1	1	2	3	3	3	2	Amidohydrolase	family
SHOCT	PF09851.9	gi|564289056|ref|YP_008875284.1|	-	1.5e-07	31.0	0.6	2.8e-07	30.1	0.6	1.5	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|564289056|ref|YP_008875284.1|	-	0.0001	22.3	0.5	0.00022	21.2	0.5	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
VbhA	PF18495.1	gi|564289056|ref|YP_008875284.1|	-	0.00049	19.9	0.4	0.00096	19.0	0.4	1.6	1	0	0	1	1	1	1	Antitoxin	VbhA
Phage_holin_3_6	PF07332.11	gi|564289056|ref|YP_008875284.1|	-	0.13	12.4	8.3	0.18	11.8	8.3	1.3	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
ABC2_membrane_3	PF12698.7	gi|564289056|ref|YP_008875284.1|	-	4.8	6.2	9.5	6.1	5.8	9.5	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Usp	PF00582.26	gi|564289057|ref|YP_008875285.1|	-	3.9e-39	134.4	0.3	4.5e-39	134.2	0.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
FlgO	PF17680.1	gi|564289057|ref|YP_008875285.1|	-	0.046	13.4	0.0	0.066	12.9	0.0	1.3	1	0	0	1	1	1	0	FlgO	protein
Transketolase_C	PF02780.20	gi|564289057|ref|YP_008875285.1|	-	0.096	12.6	0.2	4.8	7.1	0.1	2.4	2	1	0	2	2	2	0	Transketolase,	C-terminal	domain
BPL_LplA_LipB	PF03099.19	gi|564289058|ref|YP_008875286.1|	-	2e-17	63.3	0.0	3e-17	62.7	0.0	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
BPL_C	PF02237.17	gi|564289058|ref|YP_008875286.1|	-	1.7e-11	43.8	0.2	5.8e-11	42.1	0.2	1.9	2	0	0	2	2	2	1	Biotin	protein	ligase	C	terminal	domain
HTH_11	PF08279.12	gi|564289058|ref|YP_008875286.1|	-	4.8e-11	42.4	0.0	1e-10	41.4	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564289058|ref|YP_008875286.1|	-	1.7e-06	28.0	0.0	3.5e-06	27.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564289058|ref|YP_008875286.1|	-	4.4e-06	26.1	0.0	1.2e-05	24.7	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564289058|ref|YP_008875286.1|	-	1.7e-05	24.6	0.0	2.9e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564289058|ref|YP_008875286.1|	-	0.00016	21.5	0.1	0.00068	19.5	0.0	2.1	2	0	0	2	2	2	1	MarR	family
BPL_LplA_LipB_2	PF16917.5	gi|564289058|ref|YP_008875286.1|	-	0.00038	20.1	0.3	0.0007	19.2	0.3	1.6	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
HTH_1	PF00126.27	gi|564289058|ref|YP_008875286.1|	-	0.017	15.1	0.9	0.23	11.4	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_23	PF13384.6	gi|564289058|ref|YP_008875286.1|	-	0.024	14.5	0.0	0.06	13.2	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_39	PF14090.6	gi|564289058|ref|YP_008875286.1|	-	0.027	14.2	0.0	0.11	12.2	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564289058|ref|YP_008875286.1|	-	0.088	12.7	0.4	0.22	11.4	0.0	2.0	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
HTH_10	PF04967.12	gi|564289058|ref|YP_008875286.1|	-	0.14	12.0	0.0	0.33	10.8	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
CPSase_L_D2	PF02786.17	gi|564289059|ref|YP_008875287.1|	-	4.1e-68	229.0	0.1	9.7e-68	227.8	0.1	1.6	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Biotin_carb_N	PF00289.22	gi|564289059|ref|YP_008875287.1|	-	3.9e-45	152.9	0.1	1e-44	151.6	0.2	1.7	2	0	0	2	2	2	1	Biotin	carboxylase,	N-terminal	domain
Biotin_carb_C	PF02785.19	gi|564289059|ref|YP_008875287.1|	-	1.9e-33	114.8	0.0	4e-33	113.7	0.0	1.6	1	0	0	1	1	1	1	Biotin	carboxylase	C-terminal	domain
Biotin_lipoyl	PF00364.22	gi|564289059|ref|YP_008875287.1|	-	1.8e-18	66.1	4.3	1.8e-18	66.1	4.3	2.1	2	0	0	2	2	2	1	Biotin-requiring	enzyme
Biotin_lipoyl_2	PF13533.6	gi|564289059|ref|YP_008875287.1|	-	3.5e-10	39.5	4.3	4.3e-07	29.7	0.0	2.8	2	1	1	3	3	3	2	Biotin-lipoyl	like
ATP-grasp	PF02222.22	gi|564289059|ref|YP_008875287.1|	-	3.6e-06	26.7	0.0	8e-06	25.5	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|564289059|ref|YP_008875287.1|	-	6.1e-06	26.1	0.0	1.1e-05	25.2	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
HlyD_3	PF13437.6	gi|564289059|ref|YP_008875287.1|	-	0.00013	22.6	0.3	1	10.1	0.1	2.6	2	0	0	2	2	2	2	HlyD	family	secretion	protein
HlyD_D23	PF16576.5	gi|564289059|ref|YP_008875287.1|	-	0.00018	20.8	0.3	0.14	11.4	0.1	2.4	1	1	1	2	2	2	2	Barrel-sandwich	domain	of	CusB	or	HlyD	membrane-fusion
Dala_Dala_lig_C	PF07478.13	gi|564289059|ref|YP_008875287.1|	-	0.0024	17.5	0.1	0.0075	15.8	0.0	1.8	2	0	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
GCV_H	PF01597.19	gi|564289059|ref|YP_008875287.1|	-	0.014	15.3	1.4	0.044	13.7	1.4	1.8	1	0	0	1	1	1	0	Glycine	cleavage	H-protein
PTS_EIIA_1	PF00358.20	gi|564289059|ref|YP_008875287.1|	-	0.063	13.0	0.6	0.32	10.8	0.1	2.3	2	1	1	3	3	3	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
Carboxyl_trans	PF01039.22	gi|564289061|ref|YP_008875289.1|	-	7.6e-197	654.8	0.1	8.7e-197	654.6	0.1	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|564289061|ref|YP_008875289.1|	-	0.006	16.1	0.6	0.11	12.0	0.0	2.3	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
UDG	PF03167.19	gi|564289062|ref|YP_008875290.1|	-	1.2e-10	41.6	0.0	1.3e-10	41.5	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF4918	PF16265.5	gi|564289062|ref|YP_008875290.1|	-	0.048	13.2	0.0	0.069	12.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4918)
MarR_2	PF12802.7	gi|564289063|ref|YP_008875291.1|	-	2.2e-06	27.5	0.7	6.7e-06	25.9	0.2	2.0	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564289063|ref|YP_008875291.1|	-	5.1e-05	23.0	0.0	0.00013	21.8	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|564289063|ref|YP_008875291.1|	-	0.00018	21.3	0.0	0.00035	20.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564289063|ref|YP_008875291.1|	-	0.00028	20.8	0.1	0.00075	19.4	0.1	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564289063|ref|YP_008875291.1|	-	0.0021	17.8	0.1	0.0021	17.8	0.1	2.2	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
DUF1724	PF08350.10	gi|564289063|ref|YP_008875291.1|	-	0.0024	18.0	0.0	0.0048	17.0	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
HTH_20	PF12840.7	gi|564289063|ref|YP_008875291.1|	-	0.0065	16.5	1.3	0.032	14.3	0.1	2.5	3	0	0	3	3	3	1	Helix-turn-helix	domain
Trp_repressor	PF01371.19	gi|564289063|ref|YP_008875291.1|	-	0.0075	16.4	0.0	0.035	14.2	0.0	2.0	2	0	0	2	2	2	1	Trp	repressor	protein
HTH_28	PF13518.6	gi|564289063|ref|YP_008875291.1|	-	0.024	14.7	0.1	0.058	13.5	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
TNRC6-PABC_bdg	PF16608.5	gi|564289063|ref|YP_008875291.1|	-	0.14	11.9	0.0	0.2	11.3	0.0	1.2	1	0	0	1	1	1	0	TNRC6-PABC	binding	domain
EamA	PF00892.20	gi|564289064|ref|YP_008875292.1|	-	3.1e-36	124.5	38.7	1.8e-20	73.5	10.3	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
SNF	PF00209.18	gi|564289066|ref|YP_008875294.1|	-	3.6e-49	167.9	31.5	3.3e-25	88.8	15.7	2.0	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
adh_short_C2	PF13561.6	gi|564289068|ref|YP_008875296.1|	-	6.2e-41	140.5	0.0	1.4e-40	139.3	0.0	1.5	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564289068|ref|YP_008875296.1|	-	5.5e-36	123.9	0.0	6.5e-36	123.6	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
Epimerase	PF01370.21	gi|564289068|ref|YP_008875296.1|	-	6e-06	25.9	0.2	2.6e-05	23.8	0.0	2.1	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.10	gi|564289068|ref|YP_008875296.1|	-	0.0012	18.7	0.2	0.0036	17.2	0.2	1.8	1	1	0	1	1	1	1	KR	domain
GDP_Man_Dehyd	PF16363.5	gi|564289068|ref|YP_008875296.1|	-	0.0036	16.7	0.0	0.005	16.3	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|564289068|ref|YP_008875296.1|	-	0.12	11.5	0.0	0.19	10.8	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
ADH_zinc_N_2	PF13602.6	gi|564289069|ref|YP_008875297.1|	-	5.2e-16	59.9	0.2	9e-16	59.1	0.2	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N	PF00107.26	gi|564289069|ref|YP_008875297.1|	-	2.4e-11	43.7	0.3	4.1e-11	43.0	0.3	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|564289069|ref|YP_008875297.1|	-	1.4e-09	37.8	0.0	3.3e-07	30.2	0.0	2.3	1	1	1	2	2	2	2	Alcohol	dehydrogenase	GroES-like	domain
YAcAr	PF10686.9	gi|564289069|ref|YP_008875297.1|	-	0.035	14.0	0.2	0.069	13.1	0.2	1.5	1	0	0	1	1	1	0	YspA,	cpYpsA-related	SLOG	family
DUF2201	PF09967.9	gi|564289069|ref|YP_008875297.1|	-	0.049	13.8	0.0	4.7	7.4	0.0	2.3	2	0	0	2	2	2	0	VWA-like	domain	(DUF2201)
Gly_rich_SFCGS	PF14272.6	gi|564289069|ref|YP_008875297.1|	-	0.15	12.1	0.7	0.39	10.7	0.7	1.7	1	0	0	1	1	1	0	Glycine-rich	SFCGS
MCPsignal	PF00015.21	gi|564289070|ref|YP_008875298.1|	-	5.7e-42	143.4	22.6	5.7e-42	143.4	22.6	5.3	2	2	2	4	4	4	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|564289070|ref|YP_008875298.1|	-	1.1e-10	41.7	0.3	1.1e-10	41.7	0.3	5.5	5	1	0	5	5	3	1	HAMP	domain
dCache_1	PF02743.18	gi|564289070|ref|YP_008875298.1|	-	1.3e-09	38.3	0.0	1.3e-09	38.3	0.0	4.4	3	2	2	5	5	5	1	Cache	domain
DUF948	PF06103.11	gi|564289070|ref|YP_008875298.1|	-	6.6e-07	29.5	49.1	0.0089	16.3	2.9	7.3	4	2	3	7	7	7	3	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|564289070|ref|YP_008875298.1|	-	0.0014	18.7	33.0	0.031	14.3	1.8	5.6	3	2	2	5	5	5	2	Protein	of	unknown	function	(DUF1664)
Htr2	PF17909.1	gi|564289070|ref|YP_008875298.1|	-	0.0095	16.2	1.0	0.0095	16.2	1.0	3.9	5	0	0	5	5	3	1	Htr2	transmembrane	domain
Prominin	PF05478.11	gi|564289070|ref|YP_008875298.1|	-	0.058	11.4	14.9	0.032	12.2	5.1	2.4	1	1	0	2	2	2	0	Prominin
DUF3584	PF12128.8	gi|564289070|ref|YP_008875298.1|	-	0.074	10.6	35.2	0.23	8.9	35.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
sCache_3_2	PF17203.4	gi|564289070|ref|YP_008875298.1|	-	0.19	11.9	0.0	0.19	11.9	0.0	4.2	4	1	0	4	4	4	0	Single	cache	domain	3
Fez1	PF06818.15	gi|564289070|ref|YP_008875298.1|	-	0.38	11.2	28.1	0.39	11.1	4.0	3.7	3	0	0	3	3	3	0	Fez1
CorA	PF01544.18	gi|564289070|ref|YP_008875298.1|	-	0.41	9.9	22.5	0.39	10.0	1.8	4.3	1	1	4	5	5	5	0	CorA-like	Mg2+	transporter	protein
PspB	PF06667.12	gi|564289070|ref|YP_008875298.1|	-	0.62	10.2	8.2	0.6	10.2	0.2	3.9	3	0	0	3	3	2	0	Phage	shock	protein	B
Serine_rich	PF08824.10	gi|564289070|ref|YP_008875298.1|	-	0.64	10.0	10.1	9.3	6.2	0.3	3.6	2	2	1	3	3	3	0	Serine	rich	protein	interaction	domain
Laminin_II	PF06009.12	gi|564289070|ref|YP_008875298.1|	-	0.86	9.6	41.7	2	8.4	1.5	5.7	2	2	4	6	6	6	0	Laminin	Domain	II
SKA1	PF07160.12	gi|564289070|ref|YP_008875298.1|	-	1.1	9.0	24.1	0.12	12.3	1.0	3.4	2	1	1	3	3	3	0	Spindle	and	kinetochore-associated	protein	1
Jnk-SapK_ap_N	PF09744.9	gi|564289070|ref|YP_008875298.1|	-	1.2	9.4	33.3	0.41	10.9	3.9	4.6	2	2	3	5	5	5	0	JNK_SAPK-associated	protein-1
LOH1CR12	PF10158.9	gi|564289070|ref|YP_008875298.1|	-	1.5	8.9	15.2	1.1	9.3	1.3	4.3	2	2	3	5	5	5	0	Tumour	suppressor	protein
CALCOCO1	PF07888.11	gi|564289070|ref|YP_008875298.1|	-	2.9	6.7	38.6	3.9	6.2	7.4	2.6	1	1	1	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
MtrB	PF05440.12	gi|564289070|ref|YP_008875298.1|	-	3.8	8.0	6.9	26	5.3	0.1	4.5	3	2	1	5	5	4	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
Fzo_mitofusin	PF04799.13	gi|564289070|ref|YP_008875298.1|	-	5.7	6.5	24.3	0.12	12.0	0.4	5.1	2	2	3	5	5	5	0	fzo-like	conserved	region
MAD	PF05557.13	gi|564289070|ref|YP_008875298.1|	-	6.7	5.0	30.8	0.59	8.4	4.2	2.2	2	0	0	2	2	2	0	Mitotic	checkpoint	protein
Bac_rhodopsin	PF01036.18	gi|564289071|ref|YP_008875299.1|	-	4e-63	213.0	27.1	4.6e-63	212.8	27.1	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
TFIIB	PF00382.19	gi|564289073|ref|YP_008875301.1|	-	3.8e-48	161.4	1.8	1e-25	89.6	0.1	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564289073|ref|YP_008875301.1|	-	4.5e-15	54.9	3.7	8.3e-15	54.0	3.7	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_N	PF00134.23	gi|564289073|ref|YP_008875301.1|	-	0.021	14.6	0.0	0.042	13.6	0.0	1.5	1	0	0	1	1	1	0	Cyclin,	N-terminal	domain
DUF2318	PF10080.9	gi|564289073|ref|YP_008875301.1|	-	0.024	14.8	0.3	0.054	13.6	0.3	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
OrfB_Zn_ribbon	PF07282.11	gi|564289073|ref|YP_008875301.1|	-	0.024	14.5	2.6	0.039	13.9	1.1	2.0	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Cyclin_C	PF02984.19	gi|564289073|ref|YP_008875301.1|	-	0.035	14.2	0.0	1	9.5	0.0	2.2	1	1	1	2	2	2	0	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|564289073|ref|YP_008875301.1|	-	0.067	12.7	1.1	0.37	10.4	0.1	2.8	3	1	0	3	3	3	0	Sigma-70,	region	4
RB_B	PF01857.20	gi|564289073|ref|YP_008875301.1|	-	0.11	12.5	0.0	0.41	10.7	0.0	1.7	1	1	0	2	2	2	0	Retinoblastoma-associated	protein	B	domain
PhnA_Zn_Ribbon	PF08274.12	gi|564289073|ref|YP_008875301.1|	-	3.1	7.8	6.3	10	6.2	6.3	1.8	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
SpoU_methylase	PF00588.19	gi|564289075|ref|YP_008875303.1|	-	8e-29	100.6	0.0	1.1e-28	100.2	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
Lactamase_B_6	PF16661.5	gi|564289075|ref|YP_008875303.1|	-	0.22	11.0	0.0	0.32	10.4	0.0	1.2	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
BAT	PF15915.5	gi|564289076|ref|YP_008875304.1|	-	5.1e-37	127.1	6.7	5.1e-37	127.1	6.7	3.1	3	1	1	4	4	4	1	GAF	and	HTH_10	associated	domain
PAS_4	PF08448.10	gi|564289076|ref|YP_008875304.1|	-	1.8e-24	86.1	1.3	1.1e-13	51.4	0.1	3.3	3	0	0	3	3	3	2	PAS	fold
GAF_3	PF13492.6	gi|564289076|ref|YP_008875304.1|	-	5.3e-19	68.8	0.1	2.3e-09	37.7	0.0	2.7	3	0	0	3	3	2	2	GAF	domain
GAF_2	PF13185.6	gi|564289076|ref|YP_008875304.1|	-	3.8e-18	66.1	3.1	5.1e-08	33.3	0.1	3.1	3	0	0	3	3	3	2	GAF	domain
HTH_10	PF04967.12	gi|564289076|ref|YP_008875304.1|	-	1.4e-17	63.2	0.0	3.4e-17	62.0	0.0	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF	PF01590.26	gi|564289076|ref|YP_008875304.1|	-	1.2e-13	51.9	0.2	1.9e-10	41.5	0.0	3.0	2	0	0	2	2	2	2	GAF	domain
PAS	PF00989.25	gi|564289076|ref|YP_008875304.1|	-	2e-10	40.7	0.0	1.9e-07	31.1	0.0	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|564289076|ref|YP_008875304.1|	-	3.6e-08	33.6	0.0	0.00057	20.1	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
HTH_20	PF12840.7	gi|564289076|ref|YP_008875304.1|	-	0.0012	18.8	0.1	0.0077	16.3	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_30	PF13556.6	gi|564289076|ref|YP_008875304.1|	-	0.0078	16.0	0.0	0.031	14.1	0.0	2.0	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564289076|ref|YP_008875304.1|	-	0.01	15.4	0.0	0.028	14.0	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PAS_10	PF13596.6	gi|564289076|ref|YP_008875304.1|	-	0.053	14.1	0.0	0.61	10.7	0.0	2.6	3	0	0	3	3	2	0	PAS	domain
HTH_AsnC-type	PF13404.6	gi|564289076|ref|YP_008875304.1|	-	0.053	13.3	0.1	0.36	10.7	0.0	2.4	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564289076|ref|YP_008875304.1|	-	0.074	12.9	0.0	0.64	10.0	0.0	2.6	2	0	0	2	2	2	0	MarR	family
HTH_8	PF02954.19	gi|564289076|ref|YP_008875304.1|	-	0.091	12.6	0.0	0.22	11.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
PAS_3	PF08447.12	gi|564289076|ref|YP_008875304.1|	-	0.1	12.9	0.0	1.4	9.3	0.0	2.5	2	0	0	2	2	2	0	PAS	fold
GatB_N	PF02934.15	gi|564289079|ref|YP_008875307.1|	-	2e-65	220.9	0.0	2.5e-65	220.6	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|564289079|ref|YP_008875307.1|	-	7.6e-19	68.1	0.0	1.3e-18	67.3	0.0	1.4	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.14	gi|564289079|ref|YP_008875307.1|	-	9.7e-16	57.8	0.0	1.9e-15	56.9	0.0	1.5	1	0	0	1	1	1	1	GAD	domain
YqeY	PF09424.10	gi|564289079|ref|YP_008875307.1|	-	0.023	14.8	0.2	0.042	13.9	0.2	1.4	1	0	0	1	1	1	0	Yqey-like	protein
potato_inhibit	PF00280.18	gi|564289080|ref|YP_008875308.1|	-	0.14	12.9	0.4	0.49	11.1	0.1	2.1	3	0	0	3	3	3	0	Potato	inhibitor	I	family
Acetyltransf_1	PF00583.25	gi|564289082|ref|YP_008875310.1|	-	1e-18	67.7	0.1	1.2e-18	67.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564289082|ref|YP_008875310.1|	-	1.4e-18	67.0	0.0	1.9e-18	66.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289082|ref|YP_008875310.1|	-	2.1e-14	53.7	0.1	3.1e-14	53.2	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564289082|ref|YP_008875310.1|	-	4.4e-09	36.6	0.0	5.3e-09	36.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289082|ref|YP_008875310.1|	-	1.1e-08	34.9	0.0	1.8e-08	34.2	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|564289082|ref|YP_008875310.1|	-	2.3e-08	34.2	0.0	6.4e-08	32.7	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564289082|ref|YP_008875310.1|	-	1e-05	26.3	0.0	1.2e-05	26.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|564289082|ref|YP_008875310.1|	-	1.3e-05	25.4	0.1	1.4e-05	25.2	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.6	gi|564289082|ref|YP_008875310.1|	-	0.0014	18.6	0.0	0.0023	17.9	0.0	1.4	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
PanZ	PF12568.8	gi|564289082|ref|YP_008875310.1|	-	0.0045	16.7	0.0	0.0057	16.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_CG	PF14542.6	gi|564289082|ref|YP_008875310.1|	-	0.0076	16.4	0.0	0.014	15.5	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_15	PF17013.5	gi|564289082|ref|YP_008875310.1|	-	0.028	13.9	0.0	0.033	13.7	0.0	1.2	1	0	0	1	1	1	0	Putative	acetyl-transferase
DUF2156	PF09924.9	gi|564289082|ref|YP_008875310.1|	-	0.029	13.4	0.0	0.041	12.9	0.0	1.2	1	0	0	1	1	1	0	Uncharacterised	conserved	protein	(DUF2156)
AstA	PF04958.12	gi|564289082|ref|YP_008875310.1|	-	0.098	11.2	0.0	2.3	6.7	0.0	2.2	1	1	1	2	2	2	0	Arginine	N-succinyltransferase	beta	subunit
Acetyltransf_16	PF05301.11	gi|564289082|ref|YP_008875310.1|	-	0.13	12.0	0.0	0.17	11.6	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase,	Mec-17
DUF4821	PF16092.5	gi|564289082|ref|YP_008875310.1|	-	0.15	11.7	0.0	0.42	10.2	0.0	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4821)
Lyase_1	PF00206.20	gi|564289083|ref|YP_008875311.1|	-	3.9e-105	351.7	0.0	6e-105	351.1	0.0	1.3	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.9	gi|564289083|ref|YP_008875311.1|	-	7.3e-25	87.1	0.4	2.1e-24	85.7	0.4	1.9	1	0	0	1	1	1	1	Fumarase	C	C-terminus
ADSL_C	PF10397.9	gi|564289083|ref|YP_008875311.1|	-	0.03	14.9	0.4	0.03	14.9	0.4	2.8	3	1	1	4	4	4	0	Adenylosuccinate	lyase	C-terminus
Capsule_synth	PF05159.14	gi|564289083|ref|YP_008875311.1|	-	0.039	13.4	0.0	0.5	9.8	0.0	2.1	2	0	0	2	2	2	0	Capsule	polysaccharide	biosynthesis	protein
BPD_transp_1	PF00528.22	gi|564289084|ref|YP_008875312.1|	-	6.1e-19	68.5	20.2	6.1e-19	68.5	20.2	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564289085|ref|YP_008875313.1|	-	2.1e-13	50.4	18.1	2.1e-13	50.4	18.1	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
MotA_ExbB	PF01618.16	gi|564289085|ref|YP_008875313.1|	-	0.00059	19.6	3.9	0.0045	16.7	1.1	3.1	3	0	0	3	3	3	1	MotA/TolQ/ExbB	proton	channel	family
DUF21	PF01595.20	gi|564289085|ref|YP_008875313.1|	-	5.7	6.6	9.8	0.26	11.0	2.2	2.3	2	0	0	2	2	2	0	Cyclin	M	transmembrane	N-terminal	domain
ABC_tran	PF00005.27	gi|564289086|ref|YP_008875314.1|	-	1e-33	116.8	0.0	2.3e-33	115.6	0.0	1.6	2	0	0	2	2	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|564289086|ref|YP_008875314.1|	-	2.3e-09	38.0	0.0	1.5e-08	35.3	0.0	2.4	2	0	0	2	2	2	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|564289086|ref|YP_008875314.1|	-	1.4e-07	31.6	0.0	3.7e-07	30.2	0.0	1.8	1	0	0	1	1	1	1	TOBE	domain
AAA_21	PF13304.6	gi|564289086|ref|YP_008875314.1|	-	1.5e-05	25.0	0.0	0.19	11.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564289086|ref|YP_008875314.1|	-	0.0001	21.8	0.1	0.00036	20.0	0.1	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564289086|ref|YP_008875314.1|	-	0.00068	19.9	0.1	0.0015	18.8	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289086|ref|YP_008875314.1|	-	0.0037	17.2	0.0	0.0087	16.0	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
Rad17	PF03215.15	gi|564289086|ref|YP_008875314.1|	-	0.0037	17.2	0.0	0.0065	16.4	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_15	PF13175.6	gi|564289086|ref|YP_008875314.1|	-	0.0043	16.8	0.0	0.064	13.0	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
TOBE	PF03459.17	gi|564289086|ref|YP_008875314.1|	-	0.0071	16.6	0.0	0.038	14.3	0.0	2.2	2	0	0	2	2	2	1	TOBE	domain
AAA_16	PF13191.6	gi|564289086|ref|YP_008875314.1|	-	0.0091	16.4	0.0	0.02	15.3	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|564289086|ref|YP_008875314.1|	-	0.039	14.4	0.0	0.2	12.1	0.0	2.1	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|564289086|ref|YP_008875314.1|	-	0.042	13.4	0.0	3.5	7.2	0.0	2.8	3	1	0	3	3	3	0	AAA	domain
CysA_C_terminal	PF17850.1	gi|564289086|ref|YP_008875314.1|	-	0.042	14.4	0.0	0.17	12.5	0.0	2.1	1	0	0	1	1	1	0	CysA	C-terminal	regulatory	domain
AAA_29	PF13555.6	gi|564289086|ref|YP_008875314.1|	-	0.056	13.2	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PRK	PF00485.18	gi|564289086|ref|YP_008875314.1|	-	0.075	12.8	0.1	2.9	7.6	0.0	2.5	3	0	0	3	3	3	0	Phosphoribulokinase	/	Uridine	kinase	family
RNase_II_C_S1	PF18614.1	gi|564289086|ref|YP_008875314.1|	-	0.16	12.0	1.0	0.74	9.8	0.0	2.6	3	0	0	3	3	3	0	RNase	II-type	exonuclease	C-terminal	S1	domain
AAA_23	PF13476.6	gi|564289086|ref|YP_008875314.1|	-	0.17	12.3	0.1	0.67	10.4	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|564289086|ref|YP_008875314.1|	-	0.19	11.7	0.7	1	9.4	0.0	2.4	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
XPG_I	PF00867.18	gi|564289087|ref|YP_008875315.1|	-	1.4e-20	73.4	0.0	2.7e-20	72.5	0.0	1.5	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.17	gi|564289087|ref|YP_008875315.1|	-	4.9e-12	46.2	0.0	8.2e-12	45.5	0.0	1.3	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.20	gi|564289087|ref|YP_008875315.1|	-	1.6e-05	25.4	0.2	4.5e-05	24.0	0.0	1.8	2	0	0	2	2	2	1	5'-3'	exonuclease,	C-terminal	SAM	fold
5_3_exonuc_N	PF02739.16	gi|564289087|ref|YP_008875315.1|	-	0.018	14.9	0.1	0.04	13.8	0.1	1.6	1	1	1	2	2	2	0	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
Acetyltransf_1	PF00583.25	gi|564289088|ref|YP_008875316.1|	-	4.4e-05	23.7	0.1	7.4e-05	23.0	0.0	1.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
DUF3054	PF11255.8	gi|564289089|ref|YP_008875317.1|	-	5.6e-20	71.9	9.0	6.8e-20	71.6	9.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3054)
IncD	PF17628.2	gi|564289089|ref|YP_008875317.1|	-	9.3	6.0	10.3	0.86	9.4	4.7	1.8	1	1	1	2	2	2	0	Inclusion	membrane	protein	D
OCD_Mu_crystall	PF02423.15	gi|564289092|ref|YP_008875321.1|	-	5.5e-65	219.4	0.6	6.8e-65	219.1	0.6	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.20	gi|564289092|ref|YP_008875321.1|	-	0.00083	19.4	0.0	0.0014	18.7	0.0	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|564289092|ref|YP_008875321.1|	-	0.0094	16.5	0.3	0.022	15.4	0.3	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|564289092|ref|YP_008875321.1|	-	0.066	13.4	0.1	0.13	12.4	0.0	1.5	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
SPP	PF06550.11	gi|564289093|ref|YP_008875322.1|	-	3.5e-88	295.8	29.4	1.7e-87	293.5	29.4	1.8	1	1	0	1	1	1	1	Signal-peptide	peptidase,	presenilin	aspartyl	protease
Presenilin	PF01080.17	gi|564289093|ref|YP_008875322.1|	-	4.1e-06	25.8	11.5	0.018	13.9	0.0	2.6	2	1	0	2	2	2	2	Presenilin
Peptidase_A22B	PF04258.13	gi|564289093|ref|YP_008875322.1|	-	6.2e-06	25.9	7.3	0.00019	21.1	3.0	2.3	2	0	0	2	2	2	2	Signal	peptide	peptidase
Gar1	PF04410.14	gi|564289094|ref|YP_008875323.1|	-	8.9e-09	35.3	0.0	9.7e-09	35.2	0.0	1.0	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
SRP19	PF01922.17	gi|564289095|ref|YP_008875324.1|	-	8.9e-24	84.3	0.0	1e-23	84.1	0.0	1.1	1	0	0	1	1	1	1	SRP19	protein
ATP-grasp	PF02222.22	gi|564289095|ref|YP_008875324.1|	-	0.0073	15.9	0.0	0.0079	15.8	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
CAP	PF00188.26	gi|564289096|ref|YP_008875325.1|	-	7.2e-05	23.6	0.0	0.00026	21.8	0.0	1.9	1	1	0	1	1	1	1	Cysteine-rich	secretory	protein	family
DUF4834	PF16118.5	gi|564289096|ref|YP_008875325.1|	-	0.16	13.0	0.4	11	7.1	0.0	2.6	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4834)
MSP1_C	PF07462.11	gi|564289096|ref|YP_008875325.1|	-	1.1	7.9	3.8	1.5	7.4	3.8	1.1	1	0	0	1	1	1	0	Merozoite	surface	protein	1	(MSP1)	C-terminus
COX2	PF00116.20	gi|564289097|ref|YP_008875326.1|	-	2.1e-15	56.6	0.0	5.1e-15	55.4	0.0	1.5	1	1	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.15	gi|564289097|ref|YP_008875326.1|	-	5.8e-12	45.6	0.5	8.8e-12	45.0	0.5	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Cupredoxin_1	PF13473.6	gi|564289097|ref|YP_008875326.1|	-	0.0098	16.0	0.0	0.024	14.8	0.0	1.8	1	1	0	1	1	1	1	Cupredoxin-like	domain
PTPLA	PF04387.14	gi|564289097|ref|YP_008875326.1|	-	0.071	12.8	0.4	0.12	12.1	0.4	1.3	1	0	0	1	1	1	0	Protein	tyrosine	phosphatase-like	protein,	PTPLA
Rft-1	PF04506.13	gi|564289097|ref|YP_008875326.1|	-	0.096	11.4	0.4	0.12	11.0	0.4	1.1	1	0	0	1	1	1	0	Rft	protein
LSDAT_prok	PF18171.1	gi|564289097|ref|YP_008875326.1|	-	0.14	11.3	0.0	0.23	10.7	0.0	1.3	1	0	0	1	1	1	0	SLOG	in	TRPM,	prokaryote
TrbC	PF04956.13	gi|564289097|ref|YP_008875326.1|	-	0.5	10.6	3.7	0.72	10.1	0.9	2.0	2	0	0	2	2	2	0	TrbC/VIRB2	family
UbiA	PF01040.18	gi|564289098|ref|YP_008875327.1|	-	5.6e-59	199.5	20.2	5.6e-59	199.5	20.2	3.0	2	1	1	3	3	3	1	UbiA	prenyltransferase	family
COX15-CtaA	PF02628.15	gi|564289098|ref|YP_008875327.1|	-	4.1e-09	36.0	13.4	1.1e-05	24.7	1.5	3.9	4	1	1	5	5	5	2	Cytochrome	oxidase	assembly	protein
Rdx	PF10262.9	gi|564289100|ref|YP_008875329.1|	-	6.4e-17	61.5	0.0	6.9e-17	61.4	0.0	1.0	1	0	0	1	1	1	1	Rdx	family
DZR	PF12773.7	gi|564291299|ref|YP_008875330.1|	-	0.0032	17.4	0.6	0.0034	17.4	0.6	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.14	gi|564291299|ref|YP_008875330.1|	-	0.0089	15.9	3.1	0.6	10.0	0.1	2.1	2	0	0	2	2	2	2	Zinc	finger	found	in	FPG	and	IleRS
ABC_tran	PF00005.27	gi|564289101|ref|YP_008875331.1|	-	2.3e-30	105.9	0.0	3.5e-30	105.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289101|ref|YP_008875331.1|	-	8.5e-17	61.9	0.0	6.1e-10	39.4	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_30	PF13604.6	gi|564289101|ref|YP_008875331.1|	-	5.4e-06	26.3	0.0	1.5e-05	24.8	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|564289101|ref|YP_008875331.1|	-	0.00012	21.9	0.0	0.21	11.3	0.0	2.4	2	1	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_15	PF13175.6	gi|564289101|ref|YP_008875331.1|	-	0.00023	21.0	0.0	0.22	11.2	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564289101|ref|YP_008875331.1|	-	0.00033	21.2	0.0	0.00047	20.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564289101|ref|YP_008875331.1|	-	0.00042	20.6	0.0	0.00092	19.5	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564289101|ref|YP_008875331.1|	-	0.0005	19.6	0.0	0.14	11.6	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_28	PF13521.6	gi|564289101|ref|YP_008875331.1|	-	0.001	19.3	0.1	0.0016	18.7	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289101|ref|YP_008875331.1|	-	0.0013	18.6	0.0	0.0023	17.9	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|564289101|ref|YP_008875331.1|	-	0.0015	18.9	0.6	0.0026	18.2	0.6	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
TsaE	PF02367.17	gi|564289101|ref|YP_008875331.1|	-	0.0016	18.4	0.1	0.0033	17.4	0.1	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_29	PF13555.6	gi|564289101|ref|YP_008875331.1|	-	0.0034	17.1	0.4	0.007	16.1	0.4	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|564289101|ref|YP_008875331.1|	-	0.0046	17.0	0.2	0.01	15.9	0.2	1.9	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA	PF00004.29	gi|564289101|ref|YP_008875331.1|	-	0.0092	16.4	0.0	0.031	14.7	0.0	1.8	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|564289101|ref|YP_008875331.1|	-	0.013	15.7	0.5	0.023	14.9	0.5	1.7	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|564289101|ref|YP_008875331.1|	-	0.013	15.1	0.4	0.081	12.5	0.2	2.0	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
OB_MalK	PF17912.1	gi|564289101|ref|YP_008875331.1|	-	0.028	15.2	0.0	0.085	13.7	0.0	2.0	1	1	0	1	1	1	0	MalK	OB	fold	domain
AAA_5	PF07728.14	gi|564289101|ref|YP_008875331.1|	-	0.03	14.3	0.0	0.23	11.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Lum_binding	PF00677.17	gi|564289101|ref|YP_008875331.1|	-	0.04	13.9	0.1	0.087	12.8	0.1	1.6	1	0	0	1	1	1	0	Lumazine	binding	domain
NACHT	PF05729.12	gi|564289101|ref|YP_008875331.1|	-	0.062	13.2	0.2	0.2	11.6	0.1	1.9	2	0	0	2	2	2	0	NACHT	domain
Mg_chelatase	PF01078.21	gi|564289101|ref|YP_008875331.1|	-	0.082	12.3	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.6	gi|564289101|ref|YP_008875331.1|	-	0.085	12.4	1.8	0.2	11.2	1.6	1.9	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|564289101|ref|YP_008875331.1|	-	0.091	12.4	0.2	0.18	11.4	0.2	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_27	PF13514.6	gi|564289101|ref|YP_008875331.1|	-	0.1	12.2	0.0	0.16	11.6	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564289101|ref|YP_008875331.1|	-	0.11	13.0	0.1	1.1	9.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|564289101|ref|YP_008875331.1|	-	0.12	12.6	0.0	1.3	9.3	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
FeoB_N	PF02421.18	gi|564289101|ref|YP_008875331.1|	-	0.17	11.4	0.1	0.29	10.6	0.1	1.3	1	0	0	1	1	1	0	Ferrous	iron	transport	protein	B
AAA_24	PF13479.6	gi|564289101|ref|YP_008875331.1|	-	0.17	11.6	0.0	0.52	10.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|564289101|ref|YP_008875331.1|	-	0.2	10.4	1.6	3.9	6.2	0.4	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
ATP_bind_1	PF03029.17	gi|564289101|ref|YP_008875331.1|	-	0.24	11.2	0.1	0.46	10.2	0.1	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_PrkA	PF08298.11	gi|564289101|ref|YP_008875331.1|	-	0.24	10.2	0.0	0.35	9.7	0.0	1.1	1	0	0	1	1	1	0	PrkA	AAA	domain
DUF815	PF05673.13	gi|564289101|ref|YP_008875331.1|	-	0.25	10.5	0.0	0.54	9.4	0.0	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
Rad17	PF03215.15	gi|564289101|ref|YP_008875331.1|	-	0.3	11.0	0.0	0.46	10.4	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
ABC2_membrane	PF01061.24	gi|564289102|ref|YP_008875332.1|	-	1.7e-22	79.9	12.1	2.4e-22	79.4	12.1	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|564289102|ref|YP_008875332.1|	-	1.6e-11	44.0	10.2	4.3e-11	42.5	3.0	2.0	2	0	0	2	2	2	2	ABC-2	family	transporter	protein
12TM_1	PF09847.9	gi|564289102|ref|YP_008875332.1|	-	0.0019	17.4	0.8	0.0025	17.0	0.8	1.1	1	0	0	1	1	1	1	Membrane	protein	of	12	TMs
CDP-OH_P_transf	PF01066.21	gi|564289102|ref|YP_008875332.1|	-	7.1	7.5	6.6	2.9	8.7	3.3	2.1	2	0	0	2	2	2	0	CDP-alcohol	phosphatidyltransferase
DSPc	PF00782.20	gi|564289103|ref|YP_008875333.1|	-	1.3e-08	34.7	0.0	1.7e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.27	gi|564289103|ref|YP_008875333.1|	-	0.00048	19.8	0.0	0.00061	19.4	0.0	1.2	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
CDKN3	PF05706.12	gi|564289103|ref|YP_008875333.1|	-	0.0043	16.7	0.0	0.15	11.7	0.0	2.1	1	1	1	2	2	2	1	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
PTPlike_phytase	PF14566.6	gi|564289103|ref|YP_008875333.1|	-	0.0065	16.6	0.0	0.0089	16.1	0.0	1.3	1	0	0	1	1	1	1	Inositol	hexakisphosphate
Y_phosphatase3	PF13350.6	gi|564289103|ref|YP_008875333.1|	-	0.07	13.1	0.0	0.089	12.7	0.0	1.2	1	0	0	1	1	1	0	Tyrosine	phosphatase	family
UPF0052	PF01933.18	gi|564289104|ref|YP_008875334.1|	-	3.1e-43	148.1	0.0	3.8e-43	147.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0052
Dus	PF01207.17	gi|564289105|ref|YP_008875335.1|	-	1.4e-09	37.5	0.2	8.2e-09	35.0	0.2	1.9	1	1	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
His_biosynth	PF00977.21	gi|564289105|ref|YP_008875335.1|	-	0.00073	19.1	0.0	0.0016	17.9	0.0	1.5	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
PcrB	PF01884.17	gi|564289105|ref|YP_008875335.1|	-	0.016	14.7	0.1	0.032	13.7	0.1	1.5	1	0	0	1	1	1	0	PcrB	family
DUF1633	PF07794.11	gi|564289105|ref|YP_008875335.1|	-	0.063	11.5	2.0	0.071	11.3	2.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1633)
IGPS	PF00218.21	gi|564289105|ref|YP_008875335.1|	-	0.18	11.0	0.0	0.28	10.3	0.0	1.4	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
CitG	PF01874.16	gi|564289106|ref|YP_008875336.1|	-	1.6e-70	238.0	1.8	1.8e-70	237.8	1.8	1.0	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
EthD	PF07110.11	gi|564289106|ref|YP_008875336.1|	-	0.011	16.9	3.7	14	6.9	0.2	3.4	2	1	1	3	3	3	0	EthD	domain
DUF447	PF04289.12	gi|564289107|ref|YP_008875337.1|	-	1.6e-45	155.0	0.0	1.8e-45	154.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Ribosomal_S17e	PF00833.18	gi|564289108|ref|YP_008875338.1|	-	2.5e-14	53.2	0.0	3e-14	53.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	S17
ParA	PF10609.9	gi|564289109|ref|YP_008875339.1|	-	5e-99	330.7	0.0	6.4e-99	330.4	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
CbiA	PF01656.23	gi|564289109|ref|YP_008875339.1|	-	1.1e-15	57.8	0.0	5.1e-15	55.7	0.0	2.0	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
FeS_assembly_P	PF01883.19	gi|564289109|ref|YP_008875339.1|	-	9e-15	54.6	1.5	1.5e-14	53.9	0.5	1.9	2	0	0	2	2	2	1	Iron-sulfur	cluster	assembly	protein
AAA_31	PF13614.6	gi|564289109|ref|YP_008875339.1|	-	2.8e-10	40.4	0.3	7.6e-09	35.7	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.11	gi|564289109|ref|YP_008875339.1|	-	4.6e-07	29.4	0.0	7.5e-07	28.7	0.0	1.4	1	0	0	1	1	1	1	ATPase	MipZ
Fer4_NifH	PF00142.18	gi|564289109|ref|YP_008875339.1|	-	2.1e-05	24.1	0.0	0.0088	15.5	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.11	gi|564289109|ref|YP_008875339.1|	-	0.00021	20.7	0.0	0.00033	20.0	0.0	1.3	1	0	0	1	1	1	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|564289109|ref|YP_008875339.1|	-	0.00052	19.3	3.3	0.00085	18.6	0.5	2.2	2	1	0	2	2	2	1	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|564289109|ref|YP_008875339.1|	-	0.0054	16.6	0.0	4.8	7.0	0.1	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|564289109|ref|YP_008875339.1|	-	0.02	14.4	0.0	0.036	13.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|564289109|ref|YP_008875339.1|	-	0.054	13.4	0.0	0.09	12.7	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
FTHFS	PF01268.19	gi|564289109|ref|YP_008875339.1|	-	0.054	11.7	0.0	0.077	11.2	0.0	1.1	1	0	0	1	1	1	0	Formate--tetrahydrofolate	ligase
CLP1_P	PF16575.5	gi|564289109|ref|YP_008875339.1|	-	0.075	12.8	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
CBP_BcsQ	PF06564.12	gi|564289109|ref|YP_008875339.1|	-	0.11	11.9	1.0	0.3	10.5	0.2	1.8	2	0	0	2	2	2	0	Cellulose	biosynthesis	protein	BcsQ
AAA_18	PF13238.6	gi|564289109|ref|YP_008875339.1|	-	0.12	12.9	0.0	0.21	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF1610	PF07754.11	gi|564289109|ref|YP_008875339.1|	-	0.13	12.2	0.2	0.32	11.0	0.2	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
Ribosomal_S13	PF00416.22	gi|564289111|ref|YP_008875341.1|	-	1.7e-49	167.5	6.3	2.1e-49	167.1	6.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
FbpA	PF05833.11	gi|564289111|ref|YP_008875341.1|	-	0.015	14.1	0.0	0.015	14.1	0.0	1.1	1	0	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
S4	PF01479.25	gi|564289112|ref|YP_008875342.1|	-	4.5e-13	48.7	0.5	2.3e-12	46.4	0.0	2.1	2	0	0	2	2	2	1	S4	domain
Ribosomal_S4	PF00163.19	gi|564289112|ref|YP_008875342.1|	-	0.0017	19.2	0.7	0.008	17.1	0.2	2.2	2	1	1	3	3	3	1	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S11	PF00411.19	gi|564289113|ref|YP_008875343.1|	-	5.6e-50	168.4	1.9	6.8e-50	168.1	1.9	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
Ribosomal_L18p	PF00861.22	gi|564289113|ref|YP_008875343.1|	-	0.002	18.5	0.1	0.0031	17.9	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
RNA_pol_A_bac	PF01000.26	gi|564289114|ref|YP_008875344.1|	-	2.8e-19	69.5	0.0	1.2e-18	67.5	0.0	1.9	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.24	gi|564289114|ref|YP_008875344.1|	-	3.1e-14	52.1	0.0	4.1e-14	51.8	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Thioredoxin_14	PF18402.1	gi|564289114|ref|YP_008875344.1|	-	0.12	12.3	0.0	0.19	11.6	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
Ribosomal_L18	PF17135.4	gi|564289115|ref|YP_008875345.1|	-	9.6e-06	25.1	0.0	9.8e-06	25.1	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	60S	L18	and	50S	L18e
Ribosomal_L27A	PF00828.19	gi|564289115|ref|YP_008875345.1|	-	3.9e-05	24.3	0.2	0.00015	22.5	0.2	1.8	1	1	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L13	PF00572.18	gi|564289116|ref|YP_008875346.1|	-	6e-09	36.2	0.8	1.3e-06	28.7	0.8	2.5	1	1	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_S9	PF00380.19	gi|564289117|ref|YP_008875347.1|	-	4.5e-31	107.9	0.0	5e-31	107.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
RNA_pol_N	PF01194.17	gi|564289118|ref|YP_008875348.1|	-	7.1e-28	96.7	0.2	7.9e-28	96.5	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
RNA_pol_Rpb6	PF01192.22	gi|564289119|ref|YP_008875349.1|	-	6.9e-11	41.9	0.0	7.5e-11	41.8	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
Enolase_C	PF00113.22	gi|564289120|ref|YP_008875350.1|	-	1e-73	248.2	1.7	1.4e-73	247.7	1.7	1.2	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.16	gi|564289120|ref|YP_008875350.1|	-	2e-33	115.4	0.2	8.2e-33	113.4	0.2	2.1	1	1	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|564289120|ref|YP_008875350.1|	-	1.5e-09	37.8	0.5	2.7e-09	36.9	0.0	1.6	2	0	0	2	2	2	1	Enolase	C-terminal	domain-like
MAAL_C	PF07476.11	gi|564289120|ref|YP_008875350.1|	-	0.00011	21.5	0.3	0.00018	20.8	0.3	1.3	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
IDEAL	PF08858.10	gi|564289120|ref|YP_008875350.1|	-	0.14	11.9	0.7	1.3	8.9	0.2	2.3	2	0	0	2	2	2	0	IDEAL	domain
Ribosomal_S2	PF00318.20	gi|564289121|ref|YP_008875351.1|	-	2.4e-23	82.5	0.2	8.5e-14	51.3	0.7	2.1	2	0	0	2	2	2	2	Ribosomal	protein	S2
SDA1	PF05285.12	gi|564289121|ref|YP_008875351.1|	-	6	6.2	9.9	7.5	5.9	9.9	1.1	1	0	0	1	1	1	0	SDA1
DUF5518	PF17647.1	gi|564289122|ref|YP_008875352.1|	-	1.5e-15	57.4	30.8	1.7e-15	57.2	30.8	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
DUF21	PF01595.20	gi|564289122|ref|YP_008875352.1|	-	0.0039	16.9	2.5	0.005	16.6	2.5	1.1	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
DUF5518	PF17647.1	gi|564289123|ref|YP_008875353.1|	-	5.1e-11	42.8	25.7	5.8e-11	42.6	25.7	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5518)
p450	PF00067.22	gi|564289124|ref|YP_008875354.1|	-	3.6e-98	329.3	0.0	4.3e-98	329.1	0.0	1.0	1	0	0	1	1	1	1	Cytochrome	P450
PAS_9	PF13426.7	gi|564289125|ref|YP_008875355.1|	-	9.4e-41	138.3	0.5	4.1e-22	78.4	0.0	3.8	4	0	0	4	4	4	3	PAS	domain
PAS_4	PF08448.10	gi|564289125|ref|YP_008875355.1|	-	5.2e-38	129.7	9.7	4.4e-14	52.7	0.1	3.8	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|564289125|ref|YP_008875355.1|	-	7.1e-27	93.7	0.5	1.2e-10	41.3	0.0	3.7	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|564289125|ref|YP_008875355.1|	-	1.1e-18	66.8	2.7	1.3e-07	31.4	0.1	4.4	4	0	0	4	4	4	3	PAS	domain
HATPase_c	PF02518.26	gi|564289125|ref|YP_008875355.1|	-	1.4e-16	61.0	0.0	3.4e-16	59.8	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|564289125|ref|YP_008875355.1|	-	1.8e-16	60.3	0.0	4.1e-16	59.1	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|564289125|ref|YP_008875355.1|	-	1.3e-14	54.0	1.0	1.3e-14	54.0	1.0	2.8	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|564289125|ref|YP_008875355.1|	-	1.2e-13	51.2	0.1	1e-10	41.8	0.0	2.9	2	0	0	2	2	2	2	PAS	fold
PAS_7	PF12860.7	gi|564289125|ref|YP_008875355.1|	-	4.4e-06	26.8	3.9	0.025	14.7	0.1	4.8	3	3	0	3	3	3	1	PAS	fold
PAS_10	PF13596.6	gi|564289125|ref|YP_008875355.1|	-	0.0097	16.5	0.1	8.6	7.0	0.0	2.9	3	0	0	3	3	2	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564289125|ref|YP_008875355.1|	-	0.035	14.1	2.3	0.12	12.3	0.1	3.0	4	0	0	4	4	4	0	Histidine	kinase-like	ATPase	domain
Lambda_tail_I	PF06805.12	gi|564289125|ref|YP_008875355.1|	-	0.09	13.1	0.0	0.66	10.3	0.0	2.5	2	0	0	2	2	2	0	Bacteriophage	lambda	tail	assembly	protein	I
PAS_12	PF18095.1	gi|564289125|ref|YP_008875355.1|	-	0.12	12.0	0.0	0.38	10.4	0.0	1.8	2	0	0	2	2	2	0	UPF0242	C-terminal	PAS-like	domain
PilJ	PF13675.6	gi|564289125|ref|YP_008875355.1|	-	0.35	10.9	2.4	1.6	8.8	0.1	3.0	3	0	0	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DivIC	PF04977.15	gi|564289125|ref|YP_008875355.1|	-	8.3	6.3	8.0	8.5	6.2	1.2	2.8	3	0	0	3	3	3	0	Septum	formation	initiator
GHMP_kinases_N	PF00288.26	gi|564289126|ref|YP_008875356.1|	-	1.4e-14	54.1	0.8	1.4e-14	54.1	0.8	2.0	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|564289126|ref|YP_008875356.1|	-	1.3e-13	51.1	0.2	1.3e-13	51.1	0.2	2.6	2	1	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.9	gi|564289126|ref|YP_008875356.1|	-	3.6e-05	23.2	0.1	0.00021	20.8	0.1	2.1	2	0	0	2	2	2	1	Galactokinase	galactose-binding	signature
AA_kinase	PF00696.28	gi|564289127|ref|YP_008875357.1|	-	4.7e-40	137.7	6.0	5.7e-40	137.4	6.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
DUF3561	PF12084.8	gi|564289127|ref|YP_008875357.1|	-	0.23	11.5	0.0	0.4	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3561)
Lactamase_B_2	PF12706.7	gi|564289129|ref|YP_008875359.1|	-	1.5e-09	37.6	1.1	8.5e-08	32.0	0.2	2.7	2	1	1	3	3	3	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|564289129|ref|YP_008875359.1|	-	3e-07	30.7	2.6	8.5e-07	29.2	2.6	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.12	gi|564289129|ref|YP_008875359.1|	-	0.00011	22.1	0.4	0.0044	16.9	0.1	2.7	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
polyprenyl_synt	PF00348.17	gi|564289130|ref|YP_008875360.1|	-	6.9e-64	215.4	0.3	8.6e-64	215.0	0.3	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
ArsA_ATPase	PF02374.15	gi|564289131|ref|YP_008875361.1|	-	5.7e-83	278.6	0.0	6.5e-83	278.4	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.23	gi|564289131|ref|YP_008875361.1|	-	3.3e-09	36.9	0.0	1.2e-08	35.1	0.0	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|564289131|ref|YP_008875361.1|	-	4.7e-07	29.5	0.8	0.0019	17.7	0.2	2.3	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
AAA_31	PF13614.6	gi|564289131|ref|YP_008875361.1|	-	5.1e-07	29.8	0.0	1.6e-06	28.2	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
CBP_BcsQ	PF06564.12	gi|564289131|ref|YP_008875361.1|	-	0.00076	19.0	0.1	0.0014	18.1	0.1	1.4	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|564289131|ref|YP_008875361.1|	-	0.0025	17.3	0.0	0.0045	16.5	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
SRP54	PF00448.22	gi|564289131|ref|YP_008875361.1|	-	0.042	13.5	0.4	0.12	12.0	0.3	1.7	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
IstB_IS21	PF01695.17	gi|564289131|ref|YP_008875361.1|	-	0.094	12.4	0.2	0.17	11.6	0.2	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_25	PF13481.6	gi|564289131|ref|YP_008875361.1|	-	2.4	7.7	7.7	2.5	7.6	3.5	2.7	1	1	0	2	2	2	0	AAA	domain
tRNA-synt_1c	PF00749.21	gi|564289132|ref|YP_008875362.1|	-	3.5e-59	200.3	0.0	4.2e-59	200.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.18	gi|564289132|ref|YP_008875362.1|	-	4.7e-14	52.6	0.0	1.9e-13	50.6	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
EGF	PF00008.27	gi|564289132|ref|YP_008875362.1|	-	0.16	12.3	0.2	0.38	11.1	0.2	1.6	1	0	0	1	1	1	0	EGF-like	domain
PAS	PF00989.25	gi|564289133|ref|YP_008875363.1|	-	2.1e-33	114.7	0.2	1.2e-16	60.7	0.0	4.6	3	2	0	3	3	3	3	PAS	fold
PAS_4	PF08448.10	gi|564289133|ref|YP_008875363.1|	-	5.2e-32	110.4	9.8	8.4e-15	55.0	0.2	4.9	4	1	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|564289133|ref|YP_008875363.1|	-	6.2e-28	97.1	0.0	7.1e-11	42.3	0.0	4.1	3	1	0	3	3	3	3	PAS	domain
HisKA_7TM	PF16927.5	gi|564289133|ref|YP_008875363.1|	-	8.5e-26	91.4	17.6	1.1e-25	91.0	17.6	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
PAS_8	PF13188.7	gi|564289133|ref|YP_008875363.1|	-	3.3e-23	81.2	0.2	1.2e-08	34.8	0.0	3.9	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|564289133|ref|YP_008875363.1|	-	5.5e-16	59.1	0.0	1.3e-15	57.9	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.7	gi|564289133|ref|YP_008875363.1|	-	1e-10	41.8	0.1	0.0033	17.6	0.0	5.0	4	2	0	4	4	4	3	PAS	fold
HisKA	PF00512.25	gi|564289133|ref|YP_008875363.1|	-	1.3e-09	38.0	1.4	3.8e-09	36.5	1.4	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_3	PF08447.12	gi|564289133|ref|YP_008875363.1|	-	7.8e-05	22.9	0.0	0.00031	21.0	0.0	2.1	3	0	0	3	3	2	1	PAS	fold
PAS_10	PF13596.6	gi|564289133|ref|YP_008875363.1|	-	0.00089	19.8	0.0	0.012	16.2	0.0	2.7	3	0	0	3	3	3	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564289133|ref|YP_008875363.1|	-	0.001	19.0	0.1	0.0027	17.6	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HSP20	PF00011.21	gi|564289134|ref|YP_008875364.1|	-	2.2e-16	59.8	0.0	3.9e-16	59.1	0.0	1.4	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|564289134|ref|YP_008875364.1|	-	1.3e-10	40.7	0.1	2.5e-10	39.8	0.0	1.5	2	0	0	2	2	2	1	HSP20-like	domain	found	in	ArsA
CDC48_N	PF02359.18	gi|564291300|ref|YP_008875365.1|	-	0.0048	17.1	0.0	0.0048	17.1	0.0	1.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
Abhydrolase_3	PF07859.13	gi|564289135|ref|YP_008875366.1|	-	3.7e-18	66.1	1.3	6.3e-18	65.4	1.3	1.3	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Peptidase_S9	PF00326.21	gi|564289135|ref|YP_008875366.1|	-	4.4e-13	49.2	0.0	1.8e-12	47.2	0.0	1.8	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
COesterase	PF00135.28	gi|564289135|ref|YP_008875366.1|	-	6.4e-10	38.5	0.0	1.8e-09	37.0	0.0	1.6	1	1	0	1	1	1	1	Carboxylesterase	family
Hydrolase_4	PF12146.8	gi|564289135|ref|YP_008875366.1|	-	6e-05	22.4	0.1	0.0074	15.6	0.0	2.4	3	0	0	3	3	3	2	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|564289135|ref|YP_008875366.1|	-	0.0035	17.4	0.1	0.006	16.7	0.1	1.3	1	0	0	1	1	1	1	TAP-like	protein
FSH1	PF03959.13	gi|564289135|ref|YP_008875366.1|	-	0.0097	15.6	0.0	0.015	15.0	0.0	1.4	1	1	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_1	PF00561.20	gi|564289135|ref|YP_008875366.1|	-	0.054	13.1	0.0	0.84	9.2	0.0	2.1	2	0	0	2	2	2	0	alpha/beta	hydrolase	fold
Fer4_7	PF12838.7	gi|564289136|ref|YP_008875367.1|	-	6.7e-13	49.0	21.7	1.8e-07	31.6	7.7	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564289136|ref|YP_008875367.1|	-	3e-12	45.8	14.5	1.2e-07	31.3	4.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|564289136|ref|YP_008875367.1|	-	2.2e-08	34.2	5.1	4.2e-08	33.2	5.3	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564289136|ref|YP_008875367.1|	-	2.5e-07	30.7	18.5	1.1e-05	25.5	7.9	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|564289136|ref|YP_008875367.1|	-	9.1e-07	28.7	14.2	2.4e-05	24.2	4.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|564289136|ref|YP_008875367.1|	-	1.4e-06	28.3	11.1	5.4e-06	26.4	11.1	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564289136|ref|YP_008875367.1|	-	2.3e-06	28.5	4.6	0.00029	21.7	1.0	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.6	gi|564289136|ref|YP_008875367.1|	-	1e-05	25.9	1.5	0.03	14.9	0.7	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564289136|ref|YP_008875367.1|	-	4.3e-05	23.4	10.0	0.0023	17.9	2.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|564289136|ref|YP_008875367.1|	-	0.00011	22.5	6.2	0.002	18.6	6.7	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|564289136|ref|YP_008875367.1|	-	0.001	19.6	15.3	0.0065	17.0	15.3	2.3	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_4	PF12800.7	gi|564289136|ref|YP_008875367.1|	-	0.0013	19.1	2.5	0.0013	19.1	2.5	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
ETF_QO	PF05187.13	gi|564289136|ref|YP_008875367.1|	-	0.0021	18.2	0.3	0.0021	18.1	0.3	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
Fer4_18	PF13746.6	gi|564289136|ref|YP_008875367.1|	-	0.0023	18.1	3.2	0.0023	18.1	3.2	2.1	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|564289136|ref|YP_008875367.1|	-	0.0024	18.7	4.1	0.0024	18.7	4.1	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
ETF	PF01012.21	gi|564289137|ref|YP_008875368.1|	-	1.6e-40	139.0	0.0	2e-40	138.6	0.0	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|564289138|ref|YP_008875369.1|	-	9.1e-25	86.5	0.3	2.6e-24	85.1	0.1	1.9	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|564289138|ref|YP_008875369.1|	-	4.2e-16	59.4	0.0	1.2e-15	57.9	0.0	1.9	1	1	0	1	1	1	1	Electron	transfer	flavoprotein	domain
PI3K_1B_p101	PF10486.9	gi|564289138|ref|YP_008875369.1|	-	2.4	5.8	3.3	3.1	5.5	3.3	1.1	1	0	0	1	1	1	0	Phosphoinositide	3-kinase	gamma	adapter	protein	p101	subunit
FAD_binding_3	PF01494.19	gi|564289139|ref|YP_008875370.1|	-	3e-12	46.5	1.5	7.8e-12	45.1	1.5	1.6	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|564289139|ref|YP_008875370.1|	-	5.4e-08	32.6	0.5	7.9e-08	32.1	0.5	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564289139|ref|YP_008875370.1|	-	4.7e-07	29.3	4.8	0.00045	19.6	1.1	2.5	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|564289139|ref|YP_008875370.1|	-	9.8e-07	28.7	7.5	0.00089	18.9	2.3	2.3	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564289139|ref|YP_008875370.1|	-	2e-05	23.9	0.5	3.8e-05	23.1	0.5	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|564289139|ref|YP_008875370.1|	-	3.7e-05	23.9	0.5	0.00012	22.2	0.5	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
ETF_QO	PF05187.13	gi|564289139|ref|YP_008875370.1|	-	0.0013	18.9	0.2	0.0022	18.1	0.2	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
HI0933_like	PF03486.14	gi|564289139|ref|YP_008875370.1|	-	0.003	16.3	3.0	0.0066	15.2	1.3	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|564289139|ref|YP_008875370.1|	-	0.0039	16.3	10.4	0.013	14.6	4.4	2.3	1	1	0	2	2	2	2	FAD	binding	domain
GIDA	PF01134.22	gi|564289139|ref|YP_008875370.1|	-	0.014	14.5	4.1	0.13	11.3	3.0	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|564289139|ref|YP_008875370.1|	-	0.021	14.1	0.7	0.038	13.2	0.7	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|564289139|ref|YP_008875370.1|	-	0.071	11.9	1.5	0.88	8.3	0.0	2.2	2	0	0	2	2	2	0	Tryptophan	halogenase
ThiF	PF00899.21	gi|564289139|ref|YP_008875370.1|	-	0.14	11.5	0.8	0.31	10.4	0.0	1.9	2	0	0	2	2	2	0	ThiF	family
Fer4_2	PF12797.7	gi|564289139|ref|YP_008875370.1|	-	2.9	8.2	5.1	0.38	11.0	0.4	2.0	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Acetyltransf_1	PF00583.25	gi|564289141|ref|YP_008875372.1|	-	1e-13	51.5	0.1	2.9e-13	50.1	0.0	1.8	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.7	gi|564289141|ref|YP_008875372.1|	-	4e-10	40.0	0.0	5.8e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289141|ref|YP_008875372.1|	-	2.9e-07	30.8	0.0	5.5e-07	29.9	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564289141|ref|YP_008875372.1|	-	3e-05	24.0	0.0	7e-05	22.8	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564289141|ref|YP_008875372.1|	-	0.00026	21.7	0.0	0.00047	20.8	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
UBA_4	PF14555.6	gi|564289141|ref|YP_008875372.1|	-	0.1	12.4	0.0	0.2	11.5	0.0	1.4	1	0	0	1	1	1	0	UBA-like	domain
ETC_C1_NDUFA4	PF04800.12	gi|564289141|ref|YP_008875372.1|	-	0.16	12.2	0.1	0.38	11.0	0.1	1.6	1	0	0	1	1	1	0	ETC	complex	I	subunit	conserved	region
Bac_luciferase	PF00296.20	gi|564289142|ref|YP_008875373.1|	-	9.8e-66	222.3	9.7	1.3e-65	221.9	9.7	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
AMP-binding	PF00501.28	gi|564289143|ref|YP_008875374.1|	-	2.2e-97	326.3	0.2	2.8e-97	326.0	0.2	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564289143|ref|YP_008875374.1|	-	1.9e-16	60.8	0.0	5.6e-16	59.3	0.0	1.9	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
DUF456	PF04306.13	gi|564289145|ref|YP_008875376.1|	-	8.1e-25	87.7	25.7	8.1e-25	87.7	25.7	1.6	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF456)
DUF5056	PF16479.5	gi|564289145|ref|YP_008875376.1|	-	0.038	14.2	0.9	0.1	12.9	0.2	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5056)
Helicase_RecD	PF05127.14	gi|564289146|ref|YP_008875377.1|	-	2.4e-47	161.1	0.0	4.2e-47	160.3	0.0	1.4	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.6	gi|564289146|ref|YP_008875377.1|	-	1.3e-41	142.5	0.1	3.2e-25	88.9	0.0	2.2	1	1	1	2	2	2	2	GNAT	acetyltransferase	2
DUF1726	PF08351.11	gi|564289146|ref|YP_008875377.1|	-	5.4e-27	93.6	0.0	1.8e-26	91.9	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
AAA_30	PF13604.6	gi|564289146|ref|YP_008875377.1|	-	1.7e-06	27.9	0.5	5.7e-06	26.2	0.0	2.2	3	0	0	3	3	3	1	AAA	domain
Acetyltransf_10	PF13673.7	gi|564289146|ref|YP_008875377.1|	-	0.0049	16.8	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289146|ref|YP_008875377.1|	-	0.015	15.7	0.0	0.12	12.8	0.0	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
NMO	PF03060.15	gi|564289147|ref|YP_008875378.1|	-	4.2e-60	203.9	8.3	9.3e-46	156.7	1.2	2.0	1	1	1	2	2	2	2	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|564289147|ref|YP_008875378.1|	-	1.3e-07	30.9	9.1	1.1e-06	27.9	9.1	2.1	1	1	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
FMN_dh	PF01070.18	gi|564289147|ref|YP_008875378.1|	-	1.9e-05	23.9	8.3	3.9e-05	22.8	8.3	1.4	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
TMP-TENI	PF02581.17	gi|564289147|ref|YP_008875378.1|	-	0.03	13.7	0.3	0.051	12.9	0.3	1.4	1	0	0	1	1	1	0	Thiamine	monophosphate	synthase
DUF561	PF04481.12	gi|564289147|ref|YP_008875378.1|	-	0.21	10.7	0.0	0.35	10.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF561)
Ribosomal_L7Ae	PF01248.26	gi|564289148|ref|YP_008875379.1|	-	2.2e-25	88.2	0.0	2.6e-25	88.0	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.6	gi|564289148|ref|YP_008875379.1|	-	0.00014	21.7	0.0	0.0002	21.2	0.0	1.2	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
DUF1269	PF06897.12	gi|564289148|ref|YP_008875379.1|	-	0.0066	16.7	2.5	1.6	9.1	0.0	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1269)
eRF1_3	PF03465.15	gi|564289148|ref|YP_008875379.1|	-	0.054	14.0	0.2	0.07	13.6	0.2	1.2	1	0	0	1	1	1	0	eRF1	domain	3
Ribosomal_S28e	PF01200.18	gi|564289149|ref|YP_008875380.1|	-	3.2e-29	100.7	2.2	3.5e-29	100.6	2.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
Ribosomal_L24e	PF01246.20	gi|564289150|ref|YP_008875381.1|	-	2e-22	79.2	0.0	2.6e-22	78.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.14	gi|564289150|ref|YP_008875381.1|	-	1.2e-05	25.1	1.4	1.6e-05	24.7	1.4	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
YHS	PF04945.13	gi|564289150|ref|YP_008875381.1|	-	0.014	15.5	0.6	0.025	14.7	0.6	1.3	1	0	0	1	1	1	0	YHS	domain
NOA36	PF06524.12	gi|564289150|ref|YP_008875381.1|	-	0.21	10.9	16.9	0.24	10.7	16.9	1.1	1	0	0	1	1	1	0	NOA36	protein
NDK	PF00334.19	gi|564289151|ref|YP_008875382.1|	-	9.4e-57	190.8	0.0	1.1e-56	190.6	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
GST_N_3	PF13417.6	gi|564289152|ref|YP_008875383.1|	-	5.2e-15	55.6	0.0	6.2e-15	55.4	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|564289152|ref|YP_008875383.1|	-	4.3e-14	52.5	0.0	5.3e-14	52.2	0.0	1.1	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|564289152|ref|YP_008875383.1|	-	3.2e-10	40.1	0.0	3.7e-10	39.9	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|564289152|ref|YP_008875383.1|	-	0.00011	22.5	0.0	0.00013	22.2	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|564289152|ref|YP_008875383.1|	-	0.0041	17.5	0.1	0.005	17.2	0.1	1.4	1	1	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Rop	PF01815.16	gi|564289152|ref|YP_008875383.1|	-	0.054	13.4	0.1	0.088	12.7	0.1	1.4	1	0	0	1	1	1	0	Rop	protein
Thioredoxin_2	PF13098.6	gi|564289152|ref|YP_008875383.1|	-	0.067	13.6	0.0	0.091	13.2	0.0	1.3	1	1	0	1	1	1	0	Thioredoxin-like	domain
NTP_transf_3	PF12804.7	gi|564289152|ref|YP_008875383.1|	-	0.084	13.2	0.0	0.094	13.1	0.0	1.0	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
UBZ_FAAP20	PF15750.5	gi|564289152|ref|YP_008875383.1|	-	0.17	11.8	0.0	0.29	11.1	0.0	1.3	1	0	0	1	1	1	0	Ubiquitin-binding	zinc-finger
SelR	PF01641.18	gi|564289153|ref|YP_008875385.1|	-	2.2e-51	173.0	0.0	2.5e-51	172.8	0.0	1.0	1	0	0	1	1	1	1	SelR	domain
Yippee-Mis18	PF03226.14	gi|564289153|ref|YP_008875385.1|	-	0.00028	21.1	0.0	0.00054	20.1	0.0	1.4	1	1	0	1	1	1	1	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
TF_Zn_Ribbon	PF08271.12	gi|564289153|ref|YP_008875385.1|	-	0.0099	15.4	6.2	0.75	9.4	0.1	2.9	3	0	0	3	3	3	2	TFIIB	zinc-binding
RIG-I_C-RD	PF11648.8	gi|564289153|ref|YP_008875385.1|	-	0.084	13.1	0.1	0.35	11.1	0.2	1.8	1	1	1	2	2	2	0	C-terminal	domain	of	RIG-I
zinc_ribbon_10	PF10058.9	gi|564289153|ref|YP_008875385.1|	-	0.088	12.6	0.2	1.1	9.0	0.1	2.1	2	0	0	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
HECT_2	PF09814.9	gi|564289153|ref|YP_008875385.1|	-	0.1	11.4	0.2	8.2	5.2	0.0	2.0	1	1	1	2	2	2	0	HECT-like	Ubiquitin-conjugating	enzyme	(E2)-binding
ADD_ATRX	PF17981.1	gi|564289153|ref|YP_008875385.1|	-	0.1	12.5	0.1	14	5.6	0.0	2.2	2	0	0	2	2	2	0	Cysteine	Rich	ADD	domain
Acetyltransf_1	PF00583.25	gi|564289154|ref|YP_008875386.1|	-	4.1e-17	62.5	0.1	4.9e-17	62.2	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564289154|ref|YP_008875386.1|	-	1.8e-11	44.1	0.1	2.3e-11	43.7	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289154|ref|YP_008875386.1|	-	3.5e-11	43.4	0.0	4.4e-11	43.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564289154|ref|YP_008875386.1|	-	3.2e-07	30.5	0.1	4.6e-07	30.0	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289154|ref|YP_008875386.1|	-	3.5e-05	23.7	0.0	6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
PanZ	PF12568.8	gi|564289154|ref|YP_008875386.1|	-	0.00024	20.8	0.7	0.0054	16.5	0.0	2.0	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_4	PF13420.7	gi|564289154|ref|YP_008875386.1|	-	0.00025	21.2	0.0	0.00033	20.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564289154|ref|YP_008875386.1|	-	0.00059	19.9	0.0	0.0011	19.0	0.0	1.5	1	1	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.6	gi|564289154|ref|YP_008875386.1|	-	0.0017	18.3	0.0	0.0054	16.7	0.0	1.8	2	0	0	2	2	2	1	ESCO1/2	acetyl-transferase
CBS	PF00571.28	gi|564289155|ref|YP_008875387.1|	-	3.7e-16	59.3	1.2	8e-07	29.4	0.0	2.2	2	0	0	2	2	2	2	CBS	domain
GCH_III	PF05165.12	gi|564289156|ref|YP_008875388.1|	-	1.3e-89	299.7	1.0	1.7e-89	299.4	1.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	III
GGDEF_2	PF17853.1	gi|564289156|ref|YP_008875388.1|	-	4.9e-07	30.0	0.0	0.0012	19.1	0.0	2.2	2	0	0	2	2	2	2	GGDEF-like	domain
mCpol	PF18182.1	gi|564289156|ref|YP_008875388.1|	-	0.003	17.9	0.0	0.047	14.0	0.0	2.1	2	0	0	2	2	2	1	minimal	CRISPR	polymerase	domain
CheD	PF03975.13	gi|564289156|ref|YP_008875388.1|	-	0.12	12.4	0.0	0.57	10.3	0.0	1.9	2	0	0	2	2	2	0	CheD	chemotactic	sensory	transduction
MarR_2	PF12802.7	gi|564289157|ref|YP_008875389.1|	-	0.034	14.0	0.4	0.11	12.4	0.4	1.7	2	0	0	2	2	2	0	MarR	family
HTH_15	PF12324.8	gi|564289157|ref|YP_008875389.1|	-	0.095	12.7	1.4	0.17	11.8	0.9	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	alkylmercury	lyase
CARDB	PF07705.11	gi|564289159|ref|YP_008875391.1|	-	0.00019	21.7	13.4	0.0086	16.3	0.2	2.9	3	0	0	3	3	3	2	CARDB
PapC_N	PF13954.6	gi|564289159|ref|YP_008875391.1|	-	0.1	12.6	0.4	6.4	6.8	0.1	3.2	3	2	0	3	3	3	0	PapC	N-terminal	domain
fn3_6	PF17766.1	gi|564289159|ref|YP_008875391.1|	-	0.13	12.5	15.2	3.4	7.9	3.0	4.5	2	2	0	2	2	2	0	Fibronectin	type-III	domain
DUF2064	PF09837.9	gi|564289160|ref|YP_008875392.1|	-	0.00062	19.6	0.0	0.001	18.9	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
Zn-ribbon_8	PF09723.10	gi|564289161|ref|YP_008875393.1|	-	0.011	15.8	2.0	0.027	14.6	2.0	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
Desulfoferrod_N	PF06397.12	gi|564289161|ref|YP_008875393.1|	-	0.016	14.8	0.2	0.024	14.3	0.2	1.2	1	0	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
HemY_N	PF07219.13	gi|564289161|ref|YP_008875393.1|	-	0.11	12.7	4.5	0.14	12.4	0.5	2.3	1	1	0	2	2	2	0	HemY	protein	N-terminus
UDG	PF03167.19	gi|564289162|ref|YP_008875394.1|	-	1.6e-20	73.6	0.0	2e-20	73.4	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
NqrM	PF04400.13	gi|564289162|ref|YP_008875394.1|	-	0.014	15.2	0.5	0.031	14.0	0.5	1.5	1	0	0	1	1	1	0	(Na+)-NQR	maturation	NqrM
Chorismate_synt	PF01264.21	gi|564289163|ref|YP_008875395.1|	-	1.8e-117	391.7	0.0	2.1e-117	391.5	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
EPSP_synthase	PF00275.20	gi|564289164|ref|YP_008875396.1|	-	5.2e-107	358.1	0.1	6.3e-107	357.8	0.1	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
Cu_amine_oxidN1	PF07833.11	gi|564289164|ref|YP_008875396.1|	-	0.019	15.5	0.0	0.23	11.9	0.0	2.4	2	0	0	2	2	2	0	Copper	amine	oxidase	N-terminal	domain
adh_short	PF00106.25	gi|564289165|ref|YP_008875397.1|	-	3.9e-35	121.1	0.3	4.9e-35	120.8	0.3	1.0	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564289165|ref|YP_008875397.1|	-	2e-32	112.6	1.4	2.9e-32	112.1	1.4	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564289165|ref|YP_008875397.1|	-	8.7e-12	45.3	0.3	1.1e-11	45.0	0.3	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564289165|ref|YP_008875397.1|	-	0.0011	18.4	0.0	0.096	12.1	0.3	2.1	2	0	0	2	2	2	2	NAD	dependent	epimerase/dehydratase	family
Fox-1_C	PF12414.8	gi|564289165|ref|YP_008875397.1|	-	0.0048	17.2	1.8	0.0048	17.2	1.8	2.1	1	1	1	2	2	2	1	Calcitonin	gene-related	peptide	regulator	C	terminal
3HCDH_N	PF02737.18	gi|564289165|ref|YP_008875397.1|	-	0.023	14.6	0.7	0.035	14.0	0.7	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
THF_DHG_CYH_C	PF02882.19	gi|564289165|ref|YP_008875397.1|	-	0.074	12.4	0.3	0.12	11.7	0.3	1.3	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Zip	PF02535.22	gi|564289166|ref|YP_008875398.1|	-	1.5e-08	34.3	15.6	6.6e-08	32.1	10.1	2.3	1	1	1	2	2	2	2	ZIP	Zinc	transporter
PAS	PF00989.25	gi|564289167|ref|YP_008875399.1|	-	3.1e-17	62.6	0.1	6.9e-17	61.5	0.1	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|564289167|ref|YP_008875399.1|	-	5.4e-17	62.0	0.1	1.6e-16	60.4	0.1	1.9	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.10	gi|564289167|ref|YP_008875399.1|	-	8.9e-12	45.2	0.1	3.5e-11	43.3	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
HATPase_c	PF02518.26	gi|564289167|ref|YP_008875399.1|	-	4.2e-11	43.4	0.0	1.1e-10	42.0	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|564289167|ref|YP_008875399.1|	-	1.2e-09	38.4	0.0	3.3e-09	36.9	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564289167|ref|YP_008875399.1|	-	8.7e-08	32.0	0.0	3.4e-07	30.1	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564289167|ref|YP_008875399.1|	-	1.5e-07	31.4	0.4	6.5e-07	29.3	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|564289167|ref|YP_008875399.1|	-	0.00036	20.4	0.0	0.00069	19.4	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SelA	PF03841.13	gi|564289167|ref|YP_008875399.1|	-	0.015	14.3	0.0	0.022	13.8	0.0	1.2	1	0	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
Snf7	PF03357.21	gi|564289167|ref|YP_008875399.1|	-	0.061	12.9	1.1	0.52	9.9	0.5	2.1	2	0	0	2	2	2	0	Snf7
ATPase	PF06745.13	gi|564289168|ref|YP_008875400.1|	-	1.2e-57	194.9	0.0	2.2e-29	102.4	0.0	2.1	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|564289168|ref|YP_008875400.1|	-	8.3e-18	64.7	1.1	6.9e-10	38.8	0.5	2.9	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.6	gi|564289168|ref|YP_008875400.1|	-	1e-11	45.5	0.7	3.7e-06	27.4	0.2	2.7	2	2	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289168|ref|YP_008875400.1|	-	1.4e-11	44.8	0.0	1.9e-05	25.0	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_24	PF13479.6	gi|564289168|ref|YP_008875400.1|	-	4.4e-08	33.1	0.0	0.0018	18.0	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
GvpD	PF07088.11	gi|564289168|ref|YP_008875400.1|	-	1.7e-07	30.2	0.2	1.8e-06	26.9	0.2	2.5	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
RecA	PF00154.21	gi|564289168|ref|YP_008875400.1|	-	2.9e-07	30.2	0.1	0.0011	18.5	0.0	2.4	2	1	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
NACHT	PF05729.12	gi|564289168|ref|YP_008875400.1|	-	3.6e-07	30.3	0.0	5.3e-05	23.2	0.0	2.3	2	0	0	2	2	2	1	NACHT	domain
AAA	PF00004.29	gi|564289168|ref|YP_008875400.1|	-	6.1e-07	29.9	1.3	0.031	14.7	0.3	3.0	2	2	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|564289168|ref|YP_008875400.1|	-	1.9e-06	27.8	0.0	0.0049	16.6	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|564289168|ref|YP_008875400.1|	-	3.7e-06	26.8	1.1	0.01	15.5	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
DnaB_C	PF03796.15	gi|564289168|ref|YP_008875400.1|	-	8.5e-06	25.3	0.0	0.035	13.4	0.1	3.2	2	1	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_5	PF07728.14	gi|564289168|ref|YP_008875400.1|	-	1.6e-05	24.9	0.0	0.33	11.0	0.0	3.1	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
MEDS	PF14417.6	gi|564289168|ref|YP_008875400.1|	-	0.00021	21.2	0.2	0.058	13.2	0.0	2.5	2	0	0	2	2	2	1	MEDS:	MEthanogen/methylotroph,	DcmR	Sensory	domain
AAA_7	PF12775.7	gi|564289168|ref|YP_008875400.1|	-	0.00026	20.6	0.0	0.31	10.5	0.0	2.3	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|564289168|ref|YP_008875400.1|	-	0.00049	20.6	1.2	0.54	10.8	0.2	3.3	3	1	0	3	3	2	1	AAA	domain
AAA_14	PF13173.6	gi|564289168|ref|YP_008875400.1|	-	0.0006	19.8	0.0	1.6	8.8	0.0	3.1	2	2	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|564289168|ref|YP_008875400.1|	-	0.00063	19.9	3.1	0.67	10.1	0.4	3.2	2	2	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|564289168|ref|YP_008875400.1|	-	0.00066	20.2	0.6	0.14	12.7	0.1	2.9	3	0	0	3	3	2	1	ABC	transporter
AAA_19	PF13245.6	gi|564289168|ref|YP_008875400.1|	-	0.00068	20.0	0.0	0.25	11.6	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|564289168|ref|YP_008875400.1|	-	0.0012	19.3	0.0	0.47	10.9	0.0	2.4	2	0	0	2	2	2	1	RNA	helicase
Rad51	PF08423.11	gi|564289168|ref|YP_008875400.1|	-	0.0021	17.4	0.2	0.0077	15.5	0.0	2.0	3	0	0	3	3	2	1	Rad51
CbiA	PF01656.23	gi|564289168|ref|YP_008875400.1|	-	0.0022	18.0	0.1	0.017	15.2	0.0	2.3	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_11	PF13086.6	gi|564289168|ref|YP_008875400.1|	-	0.0028	17.5	0.0	2.3	7.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_28	PF13521.6	gi|564289168|ref|YP_008875400.1|	-	0.0034	17.6	0.4	2.8	8.2	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
DUF2075	PF09848.9	gi|564289168|ref|YP_008875400.1|	-	0.0046	16.3	0.1	0.12	11.5	0.0	2.5	3	0	0	3	3	3	1	Uncharacterized	conserved	protein	(DUF2075)
ATPase_2	PF01637.18	gi|564289168|ref|YP_008875400.1|	-	0.011	15.7	0.0	0.56	10.1	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
RsgA_GTPase	PF03193.16	gi|564289168|ref|YP_008875400.1|	-	0.012	15.6	0.2	0.052	13.5	0.0	2.0	2	0	0	2	2	2	0	RsgA	GTPase
AAA_29	PF13555.6	gi|564289168|ref|YP_008875400.1|	-	0.019	14.7	4.3	0.26	11.0	1.6	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
DAP3	PF10236.9	gi|564289168|ref|YP_008875400.1|	-	0.035	13.3	0.0	4.7	6.3	0.0	2.2	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
Sigma54_activat	PF00158.26	gi|564289168|ref|YP_008875400.1|	-	0.052	13.2	0.3	21	4.8	0.2	3.1	2	1	0	2	2	2	0	Sigma-54	interaction	domain
PhoH	PF02562.16	gi|564289168|ref|YP_008875400.1|	-	0.12	11.8	1.4	1.9	7.9	0.1	2.3	2	0	0	2	2	2	0	PhoH-like	protein
Mg_chelatase	PF01078.21	gi|564289168|ref|YP_008875400.1|	-	0.13	11.6	0.5	2.3	7.6	0.1	2.2	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
T2SSE	PF00437.20	gi|564289168|ref|YP_008875400.1|	-	0.14	11.2	1.9	1.6	7.7	0.0	2.7	2	1	0	2	2	2	0	Type	II/IV	secretion	system	protein
Rad17	PF03215.15	gi|564289168|ref|YP_008875400.1|	-	0.17	11.8	0.2	3.2	7.6	0.0	2.5	2	0	0	2	2	2	0	Rad17	P-loop	domain
TrwB_AAD_bind	PF10412.9	gi|564289168|ref|YP_008875400.1|	-	0.18	10.7	0.1	6.1	5.6	0.0	2.4	3	0	0	3	3	3	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Roc	PF08477.13	gi|564289168|ref|YP_008875400.1|	-	0.23	11.7	0.0	52	4.1	0.0	2.8	3	0	0	3	3	3	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
Saccharop_dh_N	PF04455.12	gi|564289169|ref|YP_008875401.1|	-	4.8e-37	126.4	0.0	1.1e-36	125.2	0.0	1.6	1	0	0	1	1	1	1	LOR/SDH	bifunctional	enzyme	conserved	region
TPP_enzyme_M	PF00205.22	gi|564289169|ref|YP_008875401.1|	-	6.3e-05	22.7	0.2	0.02	14.7	0.1	2.3	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	central	domain
DS	PF01916.17	gi|564289169|ref|YP_008875401.1|	-	0.0091	15.3	0.0	0.029	13.6	0.0	1.7	1	1	0	1	1	1	1	Deoxyhypusine	synthase
TPP_enzyme_N	PF02776.18	gi|564289171|ref|YP_008875403.1|	-	7.4e-41	139.6	1.1	2.6e-37	128.1	0.1	2.6	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|564289171|ref|YP_008875403.1|	-	6.9e-38	129.8	0.1	1.2e-37	129.0	0.1	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|564289171|ref|YP_008875403.1|	-	1.7e-34	118.5	0.3	4.5e-34	117.1	0.2	1.8	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
SRAP	PF02586.14	gi|564289172|ref|YP_008875404.1|	-	3.9e-65	219.4	0.0	4.5e-65	219.3	0.0	1.0	1	0	0	1	1	1	1	SOS	response	associated	peptidase	(SRAP)
HTH_Tnp_Tc3_2	PF01498.18	gi|564289173|ref|YP_008875405.1|	-	0.12	12.6	0.0	0.12	12.6	0.0	1.1	1	0	0	1	1	1	0	Transposase
PALP	PF00291.25	gi|564289174|ref|YP_008875406.1|	-	6.8e-60	203.0	1.6	7.7e-60	202.8	1.6	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.26	gi|564289174|ref|YP_008875406.1|	-	0.0079	16.2	0.2	0.034	14.1	0.2	2.0	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
eIF-5_eIF-2B	PF01873.17	gi|564289175|ref|YP_008875407.1|	-	1.1e-29	102.6	0.0	1.6e-29	102.1	0.0	1.2	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
TRAM	PF01938.20	gi|564289175|ref|YP_008875407.1|	-	1.3e-07	31.5	1.2	1.9e-07	30.9	1.2	1.3	1	0	0	1	1	1	1	TRAM	domain
Lar_restr_allev	PF14354.6	gi|564289175|ref|YP_008875407.1|	-	0.022	15.1	0.5	0.063	13.7	0.5	1.8	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
DNA_RNApol_7kD	PF03604.13	gi|564289175|ref|YP_008875407.1|	-	0.077	12.7	1.6	0.23	11.1	1.6	1.7	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
TF_Zn_Ribbon	PF08271.12	gi|564289175|ref|YP_008875407.1|	-	0.23	11.0	1.4	0.47	10.0	1.4	1.5	1	0	0	1	1	1	0	TFIIB	zinc-binding
HTH_20	PF12840.7	gi|564289176|ref|YP_008875408.1|	-	0.0077	16.3	2.0	0.01	15.9	0.3	2.1	2	1	0	2	2	2	1	Helix-turn-helix	domain
DICT	PF10069.9	gi|564289177|ref|YP_008875409.1|	-	3.2e-15	56.0	0.0	6.1e-15	55.1	0.0	1.4	2	0	0	2	2	2	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
PGA_cap	PF09587.10	gi|564289178|ref|YP_008875410.1|	-	3e-67	226.8	0.0	3.6e-67	226.5	0.0	1.1	1	0	0	1	1	1	1	Bacterial	capsule	synthesis	protein	PGA_cap
FAD_binding_2	PF00890.24	gi|564289179|ref|YP_008875412.1|	-	5.7e-91	305.7	3.0	7e-91	305.4	3.0	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|564289179|ref|YP_008875412.1|	-	6.7e-19	68.1	0.0	1.5e-18	67.0	0.0	1.5	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
DAO	PF01266.24	gi|564289179|ref|YP_008875412.1|	-	2.1e-07	30.9	0.4	8e-07	29.0	0.4	1.9	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564289179|ref|YP_008875412.1|	-	4.6e-05	22.8	2.2	0.0004	19.7	0.6	2.7	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|564289179|ref|YP_008875412.1|	-	0.00092	18.6	1.2	0.0015	17.9	1.2	1.4	1	1	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|564289179|ref|YP_008875412.1|	-	0.0012	17.7	2.4	0.96	8.1	1.5	3.0	3	0	0	3	3	3	2	HI0933-like	protein
Pyr_redox_3	PF13738.6	gi|564289179|ref|YP_008875412.1|	-	0.023	13.9	1.1	0.023	13.9	1.1	1.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564289179|ref|YP_008875412.1|	-	0.04	13.6	0.1	0.063	12.9	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.22	gi|564289179|ref|YP_008875412.1|	-	0.049	12.7	0.5	0.09	11.8	0.5	1.4	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.6	gi|564289179|ref|YP_008875412.1|	-	0.11	12.7	4.0	0.089	13.0	1.5	2.2	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
ThiF	PF00899.21	gi|564289179|ref|YP_008875412.1|	-	0.23	10.8	0.2	0.37	10.1	0.2	1.2	1	0	0	1	1	1	0	ThiF	family
Thi4	PF01946.17	gi|564289179|ref|YP_008875412.1|	-	0.73	9.0	2.9	13	4.9	0.4	2.4	2	0	0	2	2	2	0	Thi4	family
Na_H_antiporter	PF03553.14	gi|564289180|ref|YP_008875413.1|	-	1.1e-54	185.8	42.8	2.1e-52	178.2	21.3	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
ABC_tran	PF00005.27	gi|564289181|ref|YP_008875414.1|	-	7.3e-33	114.0	0.0	1.5e-32	113.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|564289181|ref|YP_008875414.1|	-	1.9e-12	47.1	0.1	1.9e-12	47.1	0.1	3.3	3	1	1	4	4	4	1	TOBE	domain
AAA_21	PF13304.6	gi|564289181|ref|YP_008875414.1|	-	3.2e-08	33.7	0.0	0.00062	19.7	0.0	2.3	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|564289181|ref|YP_008875414.1|	-	3.7e-05	23.9	3.9	0.0012	19.1	0.0	3.5	3	1	0	3	3	3	1	TOBE	domain
AAA_22	PF13401.6	gi|564289181|ref|YP_008875414.1|	-	0.00039	20.7	0.0	0.0014	18.9	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564289181|ref|YP_008875414.1|	-	0.002	17.9	0.4	0.078	12.7	0.1	3.1	2	1	1	3	3	3	1	AAA	domain
SMC_N	PF02463.19	gi|564289181|ref|YP_008875414.1|	-	0.002	17.6	0.0	0.1	12.0	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564289181|ref|YP_008875414.1|	-	0.0027	18.1	0.1	0.0055	17.1	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|564289181|ref|YP_008875414.1|	-	0.0031	17.9	0.3	0.065	13.7	0.1	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.15	gi|564289181|ref|YP_008875414.1|	-	0.011	15.6	0.0	0.018	15.0	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
ABC_ATPase	PF09818.9	gi|564289181|ref|YP_008875414.1|	-	0.016	14.1	0.1	0.11	11.2	0.0	2.2	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_25	PF13481.6	gi|564289181|ref|YP_008875414.1|	-	0.018	14.6	0.0	0.091	12.3	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289181|ref|YP_008875414.1|	-	0.038	13.9	0.0	0.083	12.8	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_28	PF13521.6	gi|564289181|ref|YP_008875414.1|	-	0.11	12.7	0.7	0.33	11.2	0.2	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|564289181|ref|YP_008875414.1|	-	0.13	12.3	0.0	0.34	10.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.6	gi|564289181|ref|YP_008875414.1|	-	0.15	12.5	0.0	0.28	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564289181|ref|YP_008875414.1|	-	0.25	11.0	0.0	0.37	10.5	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
BPD_transp_1	PF00528.22	gi|564289182|ref|YP_008875415.1|	-	3e-31	108.6	41.9	4.9e-17	62.3	13.2	3.5	3	1	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.6	gi|564289183|ref|YP_008875416.1|	-	3.2e-18	66.0	0.0	4.4e-18	65.6	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|564289183|ref|YP_008875416.1|	-	5.2e-18	65.9	0.0	7e-18	65.4	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564289183|ref|YP_008875416.1|	-	2.4e-12	47.5	0.2	3.1e-12	47.1	0.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|564289183|ref|YP_008875416.1|	-	5.2e-05	23.1	0.0	9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564289183|ref|YP_008875416.1|	-	0.15	11.9	3.4	0.33	10.9	3.4	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TraQ	PF09679.10	gi|564289184|ref|YP_008875417.1|	-	0.49	10.3	3.6	0.81	9.6	3.6	1.4	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	chaperone	(TraQ)
AP_endonuc_2	PF01261.24	gi|564289185|ref|YP_008875418.1|	-	1.7e-08	34.2	0.0	0.00014	21.4	0.0	2.3	1	1	0	2	2	2	2	Xylose	isomerase-like	TIM	barrel
E1_dh	PF00676.20	gi|564289186|ref|YP_008875419.1|	-	2.1e-75	253.5	0.0	2.7e-75	253.1	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.6	gi|564289186|ref|YP_008875419.1|	-	5.9e-05	22.4	0.0	8.8e-05	21.8	0.0	1.2	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
HTH_41	PF14502.6	gi|564289186|ref|YP_008875419.1|	-	0.024	14.3	0.0	0.05	13.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Hemerythrin	PF01814.23	gi|564289187|ref|YP_008875420.1|	-	0.047	14.3	0.0	29	5.3	0.0	2.8	3	0	0	3	3	3	0	Hemerythrin	HHE	cation	binding	domain
FliD_C	PF07195.12	gi|564289187|ref|YP_008875420.1|	-	0.057	12.8	0.0	0.29	10.5	0.0	1.9	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Nramp	PF01566.18	gi|564289188|ref|YP_008875421.1|	-	2.5e-65	220.8	32.5	3.9e-65	220.2	32.5	1.2	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
DUF3918	PF13056.6	gi|564289188|ref|YP_008875421.1|	-	0.14	11.7	0.1	0.54	9.9	0.1	2.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3918)
AAA_16	PF13191.6	gi|564289189|ref|YP_008875422.1|	-	0.014	15.8	0.2	0.019	15.3	0.2	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
T2SSE	PF00437.20	gi|564289189|ref|YP_008875422.1|	-	0.041	13.0	0.3	0.32	10.0	0.1	2.0	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
Y2_Tnp	PF04986.13	gi|564289189|ref|YP_008875422.1|	-	0.17	11.9	0.1	0.55	10.2	0.0	1.7	1	1	1	2	2	2	0	Putative	transposase
PEP-CTERM	PF07589.11	gi|564289191|ref|YP_008875424.1|	-	0.0031	17.5	1.8	0.042	13.9	0.1	2.3	2	0	0	2	2	2	1	PEP-CTERM	motif
PGPGW	PF09656.10	gi|564289191|ref|YP_008875424.1|	-	0.035	13.6	4.4	0.038	13.5	4.4	1.1	1	0	0	1	1	1	0	Putative	transmembrane	protein	(PGPGW)
KH_7	PF17214.3	gi|564289192|ref|YP_008875425.1|	-	3.2e-30	103.9	1.7	1.9e-28	98.2	0.6	2.7	2	0	0	2	2	2	1	KH	domain
Beta-Casp	PF10996.8	gi|564289192|ref|YP_008875425.1|	-	6.9e-20	71.4	0.0	1.4e-19	70.4	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|564289192|ref|YP_008875425.1|	-	6.2e-17	61.3	0.0	1.4e-16	60.2	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|564289192|ref|YP_008875425.1|	-	9.8e-14	51.8	3.0	3e-13	50.2	3.0	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|564289192|ref|YP_008875425.1|	-	4.1e-11	42.7	0.0	7e-11	41.9	0.0	1.3	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|564289192|ref|YP_008875425.1|	-	8.9e-11	41.7	0.1	1.6e-10	40.9	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|564289192|ref|YP_008875425.1|	-	1.7e-06	27.7	0.1	4.4e-06	26.4	0.0	1.8	2	0	0	2	2	2	1	KH	domain
Lactamase_B_3	PF13483.6	gi|564289192|ref|YP_008875425.1|	-	0.00061	19.7	0.0	0.0015	18.4	0.0	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.6	gi|564289192|ref|YP_008875425.1|	-	0.032	14.1	0.1	0.083	12.8	0.1	1.7	1	0	0	1	1	1	0	KH	domain
KH_1	PF00013.29	gi|564289192|ref|YP_008875425.1|	-	0.088	12.6	0.0	0.22	11.4	0.0	1.7	1	0	0	1	1	1	0	KH	domain
Iron_transport	PF10634.9	gi|564289194|ref|YP_008875427.1|	-	0.00021	21.5	0.1	0.0018	18.5	0.0	2.3	2	1	0	2	2	2	1	Fe2+	transport	protein
TAT_signal	PF10518.9	gi|564289194|ref|YP_008875427.1|	-	0.088	12.7	1.6	0.24	11.3	1.6	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Dyp_perox	PF04261.12	gi|564289195|ref|YP_008875429.1|	-	9.7e-06	24.8	0.1	0.00012	21.2	0.1	2.4	1	1	0	1	1	1	1	Dyp-type	peroxidase	family
HTH_20	PF12840.7	gi|564289196|ref|YP_008875430.1|	-	1.8e-13	50.3	4.2	1.7e-07	31.2	1.3	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564289196|ref|YP_008875430.1|	-	2.5e-09	36.8	0.4	4.9e-06	26.3	0.1	2.9	3	0	0	3	3	3	2	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564289196|ref|YP_008875430.1|	-	3.8e-08	32.8	0.0	4.3e-05	23.0	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564289196|ref|YP_008875430.1|	-	7.9e-08	32.1	5.9	6.1e-05	22.8	0.9	3.2	2	1	1	3	3	3	2	MarR	family
TrmB	PF01978.19	gi|564289196|ref|YP_008875430.1|	-	6.3e-06	26.0	0.0	7.4e-05	22.6	0.0	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564289196|ref|YP_008875430.1|	-	6.8e-06	25.8	0.9	0.00045	20.0	0.3	2.8	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|564289196|ref|YP_008875430.1|	-	0.0014	18.5	0.0	0.033	14.1	0.0	2.6	3	0	0	3	3	3	1	MarR	family
HTH_10	PF04967.12	gi|564289196|ref|YP_008875430.1|	-	0.015	15.1	0.0	0.31	10.9	0.0	2.2	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Rrf2	PF02082.20	gi|564289196|ref|YP_008875430.1|	-	0.069	13.5	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
FaeA	PF04703.12	gi|564289196|ref|YP_008875430.1|	-	0.1	13.0	0.0	2.7	8.4	0.0	2.1	2	0	0	2	2	2	0	FaeA-like	protein
Penicillinase_R	PF03965.16	gi|564289196|ref|YP_008875430.1|	-	0.18	12.2	0.1	1.1	9.6	0.0	2.1	2	1	0	2	2	2	0	Penicillinase	repressor
SAM_adeno_trans	PF01887.16	gi|564289198|ref|YP_008875432.1|	-	9.7e-14	51.4	0.0	2.1e-13	50.3	0.0	1.5	1	1	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
HGTP_anticodon	PF03129.20	gi|564289199|ref|YP_008875433.1|	-	5.6e-21	74.5	0.4	9.9e-21	73.7	0.1	1.6	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|564289199|ref|YP_008875433.1|	-	1.5e-19	70.7	0.0	2.5e-19	70.0	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
ProRS-C_1	PF09180.11	gi|564289199|ref|YP_008875433.1|	-	1.3e-18	66.9	0.3	3.9e-18	65.4	0.3	1.9	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
YceD	PF02620.17	gi|564289199|ref|YP_008875433.1|	-	0.057	13.5	0.9	0.26	11.4	0.7	2.1	2	0	0	2	2	2	0	Large	ribosomal	RNA	subunit	accumulation	protein	YceD
VATC	PF18716.1	gi|564289199|ref|YP_008875433.1|	-	2.1	8.3	3.7	1	9.3	0.1	2.2	2	0	0	2	2	2	0	Vms1-associating	treble	clef	domain
Patatin	PF01734.22	gi|564289200|ref|YP_008875434.1|	-	2.6e-16	60.4	0.1	5.6e-16	59.3	0.1	1.6	1	0	0	1	1	1	1	Patatin-like	phospholipase
CBS	PF00571.28	gi|564289201|ref|YP_008875435.1|	-	4.2e-28	97.5	3.6	7.1e-15	55.2	0.3	2.1	2	0	0	2	2	2	2	CBS	domain
GATase_2	PF00310.21	gi|564289202|ref|YP_008875436.1|	-	8.6e-158	525.5	0.0	1.1e-157	525.0	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Glu_synthase	PF01645.17	gi|564289202|ref|YP_008875436.1|	-	3.1e-149	497.1	0.1	1.7e-146	488.1	0.1	2.2	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.14	gi|564289202|ref|YP_008875436.1|	-	7.9e-116	386.4	0.0	4.5e-114	380.7	0.0	2.2	2	0	0	2	2	2	1	Glutamate	synthase	central	domain
GXGXG	PF01493.19	gi|564289202|ref|YP_008875436.1|	-	6.2e-79	264.0	8.8	1.1e-78	263.3	8.8	1.4	1	0	0	1	1	1	1	GXGXG	motif
NMO	PF03060.15	gi|564289202|ref|YP_008875436.1|	-	0.00052	19.5	1.1	0.0009	18.7	1.1	1.3	1	0	0	1	1	1	1	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|564289202|ref|YP_008875436.1|	-	0.0025	16.9	2.1	0.0025	16.9	2.1	2.5	3	0	0	3	3	3	1	FMN-dependent	dehydrogenase
Band_7	PF01145.25	gi|564289203|ref|YP_008875437.1|	-	7.2e-26	91.3	11.7	1e-25	90.8	11.2	1.5	1	1	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|564289203|ref|YP_008875437.1|	-	0.0024	17.6	0.1	0.0035	17.1	0.1	1.3	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
FliL	PF03748.14	gi|564289203|ref|YP_008875437.1|	-	0.012	16.2	0.2	0.012	16.2	0.2	2.1	2	0	0	2	2	2	0	Flagellar	basal	body-associated	protein	FliL
Pilin_N	PF07790.11	gi|564289204|ref|YP_008875438.1|	-	5.4e-11	43.3	8.7	7.9e-11	42.7	6.5	2.2	2	1	1	3	3	3	1	Archaeal	Type	IV	pilin,	N-terminal
Epimerase	PF01370.21	gi|564289205|ref|YP_008875439.1|	-	6.4e-28	97.8	1.0	1e-25	90.6	1.0	2.1	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|564289205|ref|YP_008875439.1|	-	1.8e-06	27.3	0.2	0.004	16.3	0.0	2.1	2	0	0	2	2	2	2	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|564289205|ref|YP_008875439.1|	-	7.1e-06	25.2	0.0	0.0015	17.6	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|564289205|ref|YP_008875439.1|	-	1.5e-05	25.0	0.2	2.3e-05	24.3	0.2	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
GDP_Man_Dehyd	PF16363.5	gi|564289205|ref|YP_008875439.1|	-	7.2e-05	22.3	0.0	0.19	11.1	0.0	2.2	2	0	0	2	2	2	2	GDP-mannose	4,6	dehydratase
NmrA	PF05368.13	gi|564289205|ref|YP_008875439.1|	-	0.0018	17.8	0.0	0.0027	17.3	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|564289205|ref|YP_008875439.1|	-	0.086	12.3	0.0	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
Regulator_TrmB	PF11495.8	gi|564289206|ref|YP_008875440.1|	-	1.6e-60	204.2	0.0	1.9e-60	203.9	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|564289206|ref|YP_008875440.1|	-	2e-17	62.8	0.0	4e-17	61.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564289206|ref|YP_008875440.1|	-	0.029	14.3	0.0	0.069	13.1	0.0	1.7	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|564289206|ref|YP_008875440.1|	-	0.033	14.5	0.0	0.082	13.3	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|564289206|ref|YP_008875440.1|	-	0.04	13.7	0.0	0.11	12.3	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Glyco_hydro_3	PF00933.21	gi|564289207|ref|YP_008875441.1|	-	6e-62	209.8	0.0	7.8e-62	209.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|564289207|ref|YP_008875441.1|	-	1.7e-36	126.1	0.0	3.4e-36	125.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|564289207|ref|YP_008875441.1|	-	1.9e-11	43.9	0.2	3.9e-11	42.9	0.2	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
TAT_signal	PF10518.9	gi|564289207|ref|YP_008875441.1|	-	1.6e-05	24.5	8.9	3.6e-05	23.4	8.9	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|564289207|ref|YP_008875441.1|	-	0.23	10.9	3.2	0.84	9.0	3.2	2.0	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Fe-ADH_2	PF13685.6	gi|564289208|ref|YP_008875442.1|	-	8.5e-62	209.1	3.2	1.1e-61	208.8	3.2	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.19	gi|564289208|ref|YP_008875442.1|	-	2.1e-18	66.3	4.7	5.2e-18	65.0	4.7	1.5	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.20	gi|564289208|ref|YP_008875442.1|	-	1.1e-09	37.8	0.2	2.9e-09	36.5	0.2	1.6	1	1	0	1	1	1	1	3-dehydroquinate	synthase
NUDIX	PF00293.28	gi|564289209|ref|YP_008875443.1|	-	0.00017	21.7	0.1	0.00024	21.2	0.1	1.3	1	0	0	1	1	1	1	NUDIX	domain
Peptidase_S9	PF00326.21	gi|564289210|ref|YP_008875444.1|	-	2.6e-47	161.0	0.0	4.2e-47	160.3	0.0	1.4	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_1	PF00561.20	gi|564289210|ref|YP_008875444.1|	-	3.3e-13	49.9	0.1	6.8e-07	29.2	0.1	2.2	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Peptidase_S15	PF02129.18	gi|564289210|ref|YP_008875444.1|	-	2.2e-12	47.2	0.0	9.7e-08	31.9	0.1	2.2	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
PD40	PF07676.12	gi|564289210|ref|YP_008875444.1|	-	1.9e-11	43.6	2.5	6.5e-06	25.9	0.2	4.8	4	0	0	4	4	4	2	WD40-like	Beta	Propeller	Repeat
DLH	PF01738.18	gi|564289210|ref|YP_008875444.1|	-	2.2e-11	43.7	0.0	6.1e-11	42.3	0.0	1.6	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|564289210|ref|YP_008875444.1|	-	4.5e-11	42.5	0.4	9.7e-07	28.3	0.1	2.7	2	1	1	3	3	3	2	Serine	aminopeptidase,	S33
AXE1	PF05448.12	gi|564289210|ref|YP_008875444.1|	-	2.7e-06	26.3	0.0	0.013	14.2	0.0	2.2	1	1	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Peptidase_S9_N	PF02897.15	gi|564289210|ref|YP_008875444.1|	-	5.5e-05	22.1	0.0	8.3e-05	21.6	0.0	1.3	1	0	0	1	1	1	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
DPPIV_N	PF00930.21	gi|564289210|ref|YP_008875444.1|	-	6.2e-05	21.9	0.0	1.3	7.7	0.0	4.0	3	1	1	4	4	4	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
Abhydrolase_3	PF07859.13	gi|564289210|ref|YP_008875444.1|	-	0.00061	19.7	0.1	0.016	15.1	0.1	2.2	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|564289210|ref|YP_008875444.1|	-	0.0017	19.0	6.9	0.0025	18.5	2.0	3.0	2	1	0	2	2	2	1	Alpha/beta	hydrolase	family
BAAT_C	PF08840.11	gi|564289210|ref|YP_008875444.1|	-	0.0078	16.2	0.0	0.23	11.3	0.0	2.2	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_2	PF02230.16	gi|564289210|ref|YP_008875444.1|	-	0.0081	16.0	0.0	1.9	8.2	0.0	2.2	2	0	0	2	2	2	1	Phospholipase/Carboxylesterase
Esterase	PF00756.20	gi|564289210|ref|YP_008875444.1|	-	0.015	15.0	0.0	0.031	13.9	0.0	1.6	1	0	0	1	1	1	0	Putative	esterase
Abhydrolase_4	PF08386.10	gi|564289210|ref|YP_008875444.1|	-	0.05	13.7	0.0	0.093	12.9	0.0	1.4	1	0	0	1	1	1	0	TAP-like	protein
LIP	PF03583.14	gi|564289210|ref|YP_008875444.1|	-	0.095	12.0	0.1	8.5	5.6	0.1	2.1	1	1	0	2	2	2	0	Secretory	lipase
Peptidase_S28	PF05577.12	gi|564289210|ref|YP_008875444.1|	-	0.11	11.3	0.0	0.16	10.7	0.0	1.1	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
DUF829	PF05705.14	gi|564289210|ref|YP_008875444.1|	-	0.15	11.9	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF829)
DUF2339	PF10101.9	gi|564289211|ref|YP_008875445.1|	-	3.1e-47	161.6	88.2	1.7e-26	93.1	55.5	3.1	1	1	2	3	3	3	3	Predicted	membrane	protein	(DUF2339)
Trimer_CC	PF08954.11	gi|564289211|ref|YP_008875445.1|	-	0.014	14.9	0.8	0.042	13.4	0.8	1.7	1	0	0	1	1	1	0	Trimerisation	motif
PspB	PF06667.12	gi|564289211|ref|YP_008875445.1|	-	0.14	12.2	0.1	0.33	11.0	0.1	1.6	1	0	0	1	1	1	0	Phage	shock	protein	B
Pox_A_type_inc	PF04508.12	gi|564289211|ref|YP_008875445.1|	-	0.14	12.0	0.0	0.27	11.2	0.0	1.5	1	0	0	1	1	1	0	Viral	A-type	inclusion	protein	repeat
CLZ	PF16526.5	gi|564289211|ref|YP_008875445.1|	-	0.2	12.0	0.3	0.33	11.3	0.3	1.3	1	0	0	1	1	1	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
DUF4536	PF15055.6	gi|564289211|ref|YP_008875445.1|	-	0.48	10.7	0.1	0.48	10.7	0.1	4.6	5	0	0	5	5	5	0	Domain	of	unknown	function	(DUF4536)
DUF997	PF06196.12	gi|564289211|ref|YP_008875445.1|	-	0.79	9.8	4.1	1.6	8.8	1.2	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF997)
Glyco_trans_4_4	PF13579.6	gi|564289212|ref|YP_008875446.1|	-	1.8e-19	70.8	10.1	3.1e-18	66.7	9.2	2.4	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|564289212|ref|YP_008875446.1|	-	2.2e-17	63.6	0.2	9.4e-17	61.5	0.2	2.0	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|564289212|ref|YP_008875446.1|	-	1.5e-15	57.2	0.0	2.9e-15	56.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564289212|ref|YP_008875446.1|	-	1.2e-13	51.7	0.0	6.6e-13	49.3	0.0	2.2	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564289212|ref|YP_008875446.1|	-	2.5e-06	27.6	0.0	1.3e-05	25.2	0.0	2.1	2	1	1	3	3	3	1	Glycosyl	transferase	4-like
DUF5402	PF17393.2	gi|564289212|ref|YP_008875446.1|	-	0.11	12.5	0.1	8.4	6.4	0.1	2.4	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5402)
Na_H_antiporter	PF03553.14	gi|564289213|ref|YP_008875447.1|	-	8.7e-39	133.5	28.0	3.7e-38	131.5	17.3	3.4	2	1	1	3	3	3	2	Na+/H+	antiporter	family
DcuC	PF03606.15	gi|564289213|ref|YP_008875447.1|	-	5.1e-06	25.2	11.1	0.0067	14.9	6.3	2.3	2	0	0	2	2	2	2	C4-dicarboxylate	anaerobic	carrier
DUF2970	PF11174.8	gi|564289213|ref|YP_008875447.1|	-	0.011	15.6	15.3	0.072	12.9	0.2	5.1	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2970)
ERCC3_RAD25_C	PF16203.5	gi|564289214|ref|YP_008875448.1|	-	2.4e-21	76.1	0.0	3.3e-21	75.6	0.0	1.2	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
ResIII	PF04851.15	gi|564289214|ref|YP_008875448.1|	-	2.2e-17	63.6	0.0	5e-17	62.4	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.31	gi|564289214|ref|YP_008875448.1|	-	5.5e-13	49.2	0.0	1.1e-12	48.2	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.23	gi|564289214|ref|YP_008875448.1|	-	3.8e-12	45.6	0.0	4.7e-12	45.3	0.0	1.2	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
DEAD	PF00270.29	gi|564289214|ref|YP_008875448.1|	-	2e-07	30.9	0.0	5.6e-07	29.5	0.0	1.7	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_25	PF13481.6	gi|564289214|ref|YP_008875448.1|	-	0.00045	19.8	1.7	0.045	13.3	0.2	3.4	2	1	1	3	3	3	1	AAA	domain
AAA	PF00004.29	gi|564289214|ref|YP_008875448.1|	-	0.0021	18.5	0.0	0.0057	17.1	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|564289214|ref|YP_008875448.1|	-	0.0035	17.1	0.0	0.0095	15.7	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564289214|ref|YP_008875448.1|	-	0.0088	16.3	0.5	0.2	11.9	0.5	2.7	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564289214|ref|YP_008875448.1|	-	0.052	13.7	0.0	0.21	11.7	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
DUF4283	PF14111.6	gi|564289214|ref|YP_008875448.1|	-	0.066	12.7	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4283)
AAA_5	PF07728.14	gi|564289214|ref|YP_008875448.1|	-	0.082	12.9	0.2	0.92	9.5	0.0	2.7	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_11	PF13086.6	gi|564289214|ref|YP_008875448.1|	-	0.11	12.2	0.0	0.2	11.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|564289214|ref|YP_008875448.1|	-	0.14	11.4	0.0	0.26	10.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
RNA_helicase	PF00910.22	gi|564289214|ref|YP_008875448.1|	-	0.21	12.0	0.0	0.45	10.9	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
MCPsignal	PF00015.21	gi|564289215|ref|YP_008875449.1|	-	2.1e-50	170.9	56.3	8.3e-47	159.2	29.8	3.9	2	1	2	4	4	4	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Protoglobin	PF11563.8	gi|564289215|ref|YP_008875449.1|	-	1.3e-36	125.8	1.9	6.8e-36	123.5	0.6	2.5	2	0	0	2	2	2	1	Protoglobin
DUF948	PF06103.11	gi|564289215|ref|YP_008875449.1|	-	1.6e-07	31.4	43.2	0.0078	16.4	3.0	5.4	3	2	2	5	5	5	3	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|564289215|ref|YP_008875449.1|	-	0.00033	20.7	39.2	0.096	12.7	5.4	4.8	4	1	1	5	5	4	2	Laminin	Domain	II
DUF1664	PF07889.12	gi|564289215|ref|YP_008875449.1|	-	0.00049	20.1	34.7	0.13	12.3	4.5	4.8	3	2	2	5	5	4	3	Protein	of	unknown	function	(DUF1664)
HOOK	PF05622.12	gi|564289215|ref|YP_008875449.1|	-	0.00053	18.3	27.5	0.0019	16.5	15.1	2.1	1	1	1	2	2	2	2	HOOK	protein
BLOC1_2	PF10046.9	gi|564289215|ref|YP_008875449.1|	-	0.0009	19.5	35.2	0.14	12.5	1.8	6.2	3	2	2	6	6	6	3	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
NOG1_N	PF17835.1	gi|564289215|ref|YP_008875449.1|	-	0.002	18.1	1.7	1.8	8.5	0.2	3.2	3	0	0	3	3	2	1	NOG1	N-terminal	helical	domain
MAD	PF05557.13	gi|564289215|ref|YP_008875449.1|	-	0.0026	16.2	7.5	0.0026	16.2	7.5	2.2	1	1	1	2	2	2	1	Mitotic	checkpoint	protein
DUF4200	PF13863.6	gi|564289215|ref|YP_008875449.1|	-	0.0049	17.3	19.8	0.42	11.0	3.5	4.3	2	2	2	4	4	4	3	Domain	of	unknown	function	(DUF4200)
TMPIT	PF07851.13	gi|564289215|ref|YP_008875449.1|	-	0.017	14.4	17.4	0.24	10.6	4.6	2.9	2	1	0	2	2	2	0	TMPIT-like	protein
Spc7	PF08317.11	gi|564289215|ref|YP_008875449.1|	-	0.021	13.7	31.7	0.14	11.0	10.3	2.9	1	1	2	3	3	3	0	Spc7	kinetochore	protein
Syntaxin-6_N	PF09177.11	gi|564289215|ref|YP_008875449.1|	-	0.029	14.9	28.9	0.062	13.8	1.8	5.1	3	2	3	6	6	6	0	Syntaxin	6,	N-terminal
ATG16	PF08614.11	gi|564289215|ref|YP_008875449.1|	-	0.074	13.3	31.4	0.17	12.1	12.3	3.0	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
TMP_2	PF06791.13	gi|564289215|ref|YP_008875449.1|	-	0.085	12.5	33.2	0.36	10.5	6.7	3.6	1	1	1	3	3	3	0	Prophage	tail	length	tape	measure	protein
Bac_globin	PF01152.21	gi|564289215|ref|YP_008875449.1|	-	0.11	12.6	0.0	0.86	9.8	0.0	2.6	1	1	0	1	1	1	0	Bacterial-like	globin
YkyA	PF10368.9	gi|564289215|ref|YP_008875449.1|	-	0.12	12.0	41.5	0.19	11.4	12.7	3.7	3	1	0	3	3	3	0	Putative	cell-wall	binding	lipoprotein
SKA2	PF16740.5	gi|564289215|ref|YP_008875449.1|	-	0.13	12.1	18.3	0.18	11.6	2.6	3.9	3	1	1	4	4	3	0	Spindle	and	kinetochore-associated	protein	2
Fib_alpha	PF08702.10	gi|564289215|ref|YP_008875449.1|	-	0.13	12.4	27.2	0.1	12.8	3.3	4.9	3	2	3	6	6	6	0	Fibrinogen	alpha/beta	chain	family
UPF0242	PF06785.11	gi|564289215|ref|YP_008875449.1|	-	0.15	12.1	22.8	0.26	11.4	4.8	4.2	2	1	2	4	4	4	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
CREPT	PF16566.5	gi|564289215|ref|YP_008875449.1|	-	0.16	12.1	15.1	4.3	7.5	1.4	4.0	1	1	3	5	5	5	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
CorA	PF01544.18	gi|564289215|ref|YP_008875449.1|	-	0.16	11.2	24.6	0.68	9.2	4.1	3.5	2	1	2	4	4	4	0	CorA-like	Mg2+	transporter	protein
NPV_P10	PF05531.12	gi|564289215|ref|YP_008875449.1|	-	0.16	12.4	40.7	0.66	10.5	2.0	6.4	4	2	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
TolA_bind_tri	PF16331.5	gi|564289215|ref|YP_008875449.1|	-	0.19	11.8	24.6	0.84	9.8	3.5	5.6	5	1	0	5	5	4	0	TolA	binding	protein	trimerisation
FlaC_arch	PF05377.11	gi|564289215|ref|YP_008875449.1|	-	0.2	12.1	31.1	1.8	9.0	0.2	6.8	4	2	2	6	6	6	0	Flagella	accessory	protein	C	(FlaC)
Baculo_PEP_C	PF04513.12	gi|564289215|ref|YP_008875449.1|	-	0.23	11.5	34.3	0.032	14.3	3.9	4.4	2	1	2	4	4	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ZapB	PF06005.12	gi|564289215|ref|YP_008875449.1|	-	0.27	11.7	26.0	0.063	13.7	2.4	5.2	3	2	2	5	5	4	0	Cell	division	protein	ZapB
ERM	PF00769.19	gi|564289215|ref|YP_008875449.1|	-	0.28	10.9	32.8	0.81	9.5	13.0	2.3	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
DUF3450	PF11932.8	gi|564289215|ref|YP_008875449.1|	-	0.31	10.3	43.4	0.85	8.9	8.2	4.8	2	1	3	5	5	5	0	Protein	of	unknown	function	(DUF3450)
FlgN	PF05130.12	gi|564289215|ref|YP_008875449.1|	-	0.4	11.2	33.9	0.83	10.2	9.4	4.4	1	1	4	5	5	5	0	FlgN	protein
DUF148	PF02520.17	gi|564289215|ref|YP_008875449.1|	-	0.48	10.5	33.6	0.12	12.5	5.1	4.9	2	2	2	4	4	4	0	Domain	of	unknown	function	DUF148
Flagellin_IN	PF07196.13	gi|564289215|ref|YP_008875449.1|	-	0.73	10.1	6.4	2.3	8.5	0.7	3.0	2	0	0	2	2	2	0	Flagellin	hook	IN	motif
GLE1	PF07817.13	gi|564289215|ref|YP_008875449.1|	-	0.83	8.8	5.6	1.3	8.2	0.4	3.0	2	1	1	3	3	3	0	GLE1-like	protein
Peptidase_S64	PF08192.11	gi|564289215|ref|YP_008875449.1|	-	0.88	8.0	14.6	0.74	8.2	13.5	1.4	1	1	0	1	1	1	0	Peptidase	family	S64
Med30	PF11315.8	gi|564289215|ref|YP_008875449.1|	-	0.98	9.6	14.0	3.1	8.0	1.6	4.0	2	1	2	4	4	3	0	Mediator	complex	subunit	30
Exonuc_VII_S	PF02609.16	gi|564289215|ref|YP_008875449.1|	-	0.99	9.5	8.2	31	4.7	2.2	4.5	4	1	0	4	4	3	0	Exonuclease	VII	small	subunit
AIP3	PF03915.13	gi|564289215|ref|YP_008875449.1|	-	0.99	8.4	32.6	1.3	8.1	15.2	2.4	1	1	1	2	2	2	0	Actin	interacting	protein	3
COG2	PF06148.11	gi|564289215|ref|YP_008875449.1|	-	1.1	9.3	27.2	3.4	7.8	3.2	5.3	3	2	3	6	6	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
COG5	PF10392.9	gi|564289215|ref|YP_008875449.1|	-	1.1	9.4	15.9	5.1	7.3	0.8	4.6	1	1	4	5	5	5	0	Golgi	transport	complex	subunit	5
Kre28	PF17097.5	gi|564289215|ref|YP_008875449.1|	-	1.3	7.9	32.2	0.6	9.0	10.7	3.0	2	1	1	3	3	3	0	Spindle	pole	body	component
IFT57	PF10498.9	gi|564289215|ref|YP_008875449.1|	-	1.4	7.8	30.2	3.6	6.5	13.8	3.2	2	1	1	3	3	3	0	Intra-flagellar	transport	protein	57
LXG	PF04740.12	gi|564289215|ref|YP_008875449.1|	-	1.7	8.3	40.9	1.1	9.0	11.5	4.3	3	2	1	4	4	4	0	LXG	domain	of	WXG	superfamily
LOH1CR12	PF10158.9	gi|564289215|ref|YP_008875449.1|	-	1.7	8.7	19.1	0.26	11.3	2.3	4.0	3	1	1	4	4	3	0	Tumour	suppressor	protein
DUF3584	PF12128.8	gi|564289215|ref|YP_008875449.1|	-	1.8	6.0	37.6	1.9	5.9	25.9	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3584)
Vip3A_N	PF12495.8	gi|564289215|ref|YP_008875449.1|	-	1.8	8.4	10.0	22	4.9	0.8	3.6	2	2	0	2	2	2	0	Vegetative	insecticide	protein	3A	N	terminal
Atg14	PF10186.9	gi|564289215|ref|YP_008875449.1|	-	1.9	7.5	14.3	3	6.8	1.2	3.2	1	1	1	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Golgin_A5	PF09787.9	gi|564289215|ref|YP_008875449.1|	-	3.4	7.1	33.9	0.31	10.5	11.6	3.0	1	1	2	3	3	3	0	Golgin	subfamily	A	member	5
Tweety	PF04906.13	gi|564289215|ref|YP_008875449.1|	-	3.5	6.2	13.9	0.9	8.1	1.8	2.9	2	1	1	3	3	3	0	Tweety
CENP-F_leu_zip	PF10473.9	gi|564289215|ref|YP_008875449.1|	-	3.6	7.6	28.6	1.1	9.2	11.2	3.2	2	2	1	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Spectrin	PF00435.21	gi|564289215|ref|YP_008875449.1|	-	3.9	8.0	26.6	0.23	12.0	4.6	4.4	2	2	2	4	4	4	0	Spectrin	repeat
Fez1	PF06818.15	gi|564289215|ref|YP_008875449.1|	-	4.5	7.7	25.1	2.8	8.3	5.8	3.1	2	1	0	2	2	2	0	Fez1
Allexi_40kDa	PF05549.11	gi|564289215|ref|YP_008875449.1|	-	5.2	6.5	21.8	0.43	10.1	4.7	3.3	2	1	1	4	4	4	0	Allexivirus	40kDa	protein
HSBP1	PF06825.12	gi|564289215|ref|YP_008875449.1|	-	5.5	6.9	19.2	0.31	10.9	0.6	5.2	6	1	1	7	7	4	0	Heat	shock	factor	binding	protein	1
Dor1	PF04124.12	gi|564289215|ref|YP_008875449.1|	-	6.8	5.3	21.9	2.6	6.7	4.4	3.7	2	1	1	4	4	3	0	Dor1-like	family
PspA_IM30	PF04012.12	gi|564289215|ref|YP_008875449.1|	-	7.7	6.0	40.6	0.72	9.4	16.1	3.5	2	2	1	3	3	3	0	PspA/IM30	family
SKA1	PF07160.12	gi|564289215|ref|YP_008875449.1|	-	8.6	6.1	20.0	5.2	6.8	6.4	2.6	2	0	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
Pterin_bind	PF00809.22	gi|564289216|ref|YP_008875450.1|	-	3.6e-80	269.2	0.1	5.8e-80	268.5	0.1	1.4	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|564289216|ref|YP_008875450.1|	-	1.5e-10	41.4	0.0	2.8e-10	40.5	0.0	1.5	1	0	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|564289216|ref|YP_008875450.1|	-	4.8e-10	39.6	0.0	1.4e-09	38.0	0.0	1.9	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
PEP_mutase	PF13714.6	gi|564289216|ref|YP_008875450.1|	-	0.00028	20.4	2.9	0.11	11.9	0.0	3.5	2	1	1	3	3	3	2	Phosphoenolpyruvate	phosphomutase
DUF21	PF01595.20	gi|564291304|ref|YP_008875452.1|	-	0.00016	21.4	0.1	0.00019	21.2	0.1	1.1	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
SHOCT	PF09851.9	gi|564291304|ref|YP_008875452.1|	-	0.00091	18.9	2.2	0.0018	17.9	2.2	1.6	1	0	0	1	1	1	1	Short	C-terminal	domain
Snf7	PF03357.21	gi|564291304|ref|YP_008875452.1|	-	0.33	10.5	1.4	0.44	10.1	1.4	1.1	1	0	0	1	1	1	0	Snf7
Form_Nir_trans	PF01226.17	gi|564289218|ref|YP_008875453.1|	-	8e-40	136.7	18.5	9.3e-40	136.4	18.5	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
AICARFT_IMPCHas	PF01808.18	gi|564289219|ref|YP_008875454.1|	-	8.7e-86	288.0	0.0	1.2e-85	287.6	0.0	1.1	1	0	0	1	1	1	1	AICARFT/IMPCHase	bienzyme
Formyl_trans_N	PF00551.19	gi|564289219|ref|YP_008875454.1|	-	6.1e-42	143.4	0.0	1.2e-41	142.5	0.0	1.5	1	0	0	1	1	1	1	Formyl	transferase
LPD22	PF18834.1	gi|564289219|ref|YP_008875454.1|	-	0.032	14.4	0.1	0.16	12.2	0.2	2.1	2	0	0	2	2	2	0	Large	polyvalent	protein	associated	domain	22
ADH_zinc_N	PF00107.26	gi|564289221|ref|YP_008875456.1|	-	1.7e-26	92.7	0.6	3e-26	91.9	0.4	1.5	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N	PF08240.12	gi|564289221|ref|YP_008875456.1|	-	4.9e-26	90.7	1.0	8.5e-26	90.0	0.3	1.7	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
AlaDh_PNT_C	PF01262.21	gi|564289221|ref|YP_008875456.1|	-	4.8e-05	22.7	1.2	6.9e-05	22.2	1.2	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
ADH_zinc_N_2	PF13602.6	gi|564289221|ref|YP_008875456.1|	-	0.00082	20.4	0.1	0.0031	18.6	0.1	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|564289221|ref|YP_008875456.1|	-	0.0017	17.8	0.1	0.0029	17.0	0.1	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|564289221|ref|YP_008875456.1|	-	0.0068	16.7	0.5	0.022	15.0	0.3	1.8	2	0	0	2	2	2	1	TrkA-N	domain
Glu_dehyd_C	PF16912.5	gi|564289221|ref|YP_008875456.1|	-	0.007	15.9	0.4	0.011	15.3	0.4	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
Methyltransf_25	PF13649.6	gi|564289221|ref|YP_008875456.1|	-	0.015	16.0	0.2	0.041	14.6	0.2	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564289221|ref|YP_008875456.1|	-	0.07	13.8	0.3	0.19	12.4	0.2	1.9	2	1	0	2	2	2	0	Methyltransferase	domain
Lyase_1	PF00206.20	gi|564289222|ref|YP_008875457.1|	-	3.7e-51	174.4	0.0	4.8e-51	174.0	0.0	1.1	1	0	0	1	1	1	1	Lyase
ASL_C	PF08328.11	gi|564289222|ref|YP_008875457.1|	-	3.8e-42	143.0	0.0	7.2e-42	142.1	0.0	1.5	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminal
ScsC_N	PF18312.1	gi|564289222|ref|YP_008875457.1|	-	0.13	12.1	0.4	0.55	10.1	0.0	2.1	2	0	0	2	2	2	0	Copper	resistance	protein	ScsC	N-terminal	domain
MFS_1	PF07690.16	gi|564289223|ref|YP_008875458.1|	-	8.3e-53	179.5	56.2	4.5e-28	98.2	25.2	2.1	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|564289223|ref|YP_008875458.1|	-	3.7e-12	45.8	25.6	6.2e-07	28.6	9.7	2.6	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
MFS_1_like	PF12832.7	gi|564289223|ref|YP_008875458.1|	-	6.1e-11	41.8	19.1	3.1e-09	36.2	19.1	3.2	1	1	0	1	1	1	1	MFS_1	like	family
MFS_4	PF06779.14	gi|564289223|ref|YP_008875458.1|	-	1e-06	28.3	29.5	2.1e-06	27.3	29.5	1.8	1	1	0	1	1	1	1	Uncharacterised	MFS-type	transporter	YbfB
DUF697	PF05128.12	gi|564289223|ref|YP_008875458.1|	-	2.1	8.1	5.5	24	4.6	0.1	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF697)
Pribosyltran	PF00156.27	gi|564289224|ref|YP_008875459.1|	-	1.4e-21	76.6	0.3	2.7e-20	72.5	0.3	2.0	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|564289224|ref|YP_008875459.1|	-	0.0012	18.4	0.0	0.002	17.6	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|564289224|ref|YP_008875459.1|	-	0.092	12.2	0.0	0.22	11.0	0.0	1.6	2	0	0	2	2	2	0	Phosphoribosyl	transferase
M20_dimer	PF07687.14	gi|564289225|ref|YP_008875460.1|	-	1.7e-22	79.4	0.0	2.8e-22	78.7	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M20	PF01546.28	gi|564289225|ref|YP_008875460.1|	-	1.5e-21	77.0	0.1	4.7e-21	75.4	0.1	1.7	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.17	gi|564289225|ref|YP_008875460.1|	-	0.052	13.2	0.1	0.082	12.6	0.1	1.4	1	0	0	1	1	1	0	Peptidase	family	M28
Orn_Arg_deC_N	PF02784.16	gi|564289226|ref|YP_008875461.1|	-	3.3e-40	138.0	0.0	4.2e-40	137.7	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Orn_DAP_Arg_deC	PF00278.22	gi|564289226|ref|YP_008875461.1|	-	6.1e-20	71.3	0.0	6.5e-20	71.2	0.0	1.3	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase,	C-terminal	sheet	domain
Ala_racemase_N	PF01168.20	gi|564289226|ref|YP_008875461.1|	-	1.1e-06	28.5	0.2	1.7e-06	27.8	0.2	1.3	1	0	0	1	1	1	1	Alanine	racemase,	N-terminal	domain
HicB	PF05534.12	gi|564289226|ref|YP_008875461.1|	-	0.12	12.2	0.2	5.2	7.0	0.0	2.8	3	0	0	3	3	3	0	HicB	family
TFX_C	PF14601.6	gi|564289227|ref|YP_008875462.1|	-	3.7e-27	94.1	0.1	5.5e-27	93.5	0.1	1.3	1	0	0	1	1	1	1	DNA_binding	protein,	TFX,	C-term
Sigma70_r4	PF04545.16	gi|564289227|ref|YP_008875462.1|	-	1.4e-06	27.8	0.7	2.2e-06	27.1	0.7	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_31	PF13560.6	gi|564289227|ref|YP_008875462.1|	-	0.0061	16.9	0.4	0.013	15.8	0.3	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|564289227|ref|YP_008875462.1|	-	0.015	15.3	0.1	0.11	12.5	0.1	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|564289227|ref|YP_008875462.1|	-	0.033	13.7	0.2	0.054	13.1	0.2	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|564289227|ref|YP_008875462.1|	-	0.039	13.6	0.1	0.063	13.0	0.1	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
MarR_2	PF12802.7	gi|564289227|ref|YP_008875462.1|	-	0.042	13.8	0.1	0.092	12.6	0.1	1.6	1	0	0	1	1	1	0	MarR	family
HTH_3	PF01381.22	gi|564289227|ref|YP_008875462.1|	-	0.055	13.5	0.1	0.11	12.5	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix
Aldedh	PF00171.22	gi|564289229|ref|YP_008875464.1|	-	3.2e-176	586.4	0.0	3.6e-176	586.2	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
DUF1487	PF07368.11	gi|564289229|ref|YP_008875464.1|	-	0.19	11.1	0.0	0.35	10.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1487)
Bactofilin	PF04519.13	gi|564289230|ref|YP_008875465.1|	-	4.2e-18	65.4	27.1	1.3e-11	44.6	4.8	2.8	1	1	2	3	3	3	2	Polymer-forming	cytoskeletal
THDPS_N_2	PF14805.6	gi|564289231|ref|YP_008875466.1|	-	5.1e-23	81.1	0.9	8.1e-23	80.4	0.9	1.3	1	0	0	1	1	1	1	Tetrahydrodipicolinate	N-succinyltransferase	N-terminal
Hexapep	PF00132.24	gi|564289231|ref|YP_008875466.1|	-	1.4e-11	43.6	4.4	0.00012	21.7	0.8	3.5	3	0	0	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564289231|ref|YP_008875466.1|	-	0.00013	21.7	10.5	0.0016	18.1	0.7	3.4	4	0	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
DapB_C	PF05173.14	gi|564289232|ref|YP_008875467.1|	-	8.4e-35	119.4	0.0	1.4e-34	118.7	0.0	1.4	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	C-terminus
DapB_N	PF01113.20	gi|564289232|ref|YP_008875467.1|	-	6.7e-23	81.1	1.7	3e-22	79.0	2.5	1.6	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
Sacchrp_dh_NADP	PF03435.18	gi|564289232|ref|YP_008875467.1|	-	6.8e-05	23.1	0.4	0.00016	22.0	0.4	1.7	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
CoA_binding	PF02629.19	gi|564289232|ref|YP_008875467.1|	-	0.0011	19.7	3.9	0.0019	18.8	3.9	1.4	1	0	0	1	1	1	1	CoA	binding	domain
Peripla_BP_6	PF13458.6	gi|564289232|ref|YP_008875467.1|	-	0.012	15.3	2.0	0.016	14.9	2.0	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
NAD_binding_3	PF03447.16	gi|564289232|ref|YP_008875467.1|	-	0.016	15.8	1.0	0.031	14.9	1.0	1.4	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|564289232|ref|YP_008875467.1|	-	0.16	11.0	1.9	0.44	9.6	1.3	1.8	1	1	1	2	2	2	0	RmlD	substrate	binding	domain
DHDPS	PF00701.22	gi|564289233|ref|YP_008875468.1|	-	3.4e-92	308.2	0.0	3.9e-92	308.0	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
ThiG	PF05690.14	gi|564289233|ref|YP_008875468.1|	-	0.0087	15.4	0.0	0.014	14.8	0.0	1.2	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
CBM_2	PF00553.19	gi|564291305|ref|YP_008875469.1|	-	0.035	14.4	0.0	0.046	14.0	0.0	1.2	1	0	0	1	1	1	0	Cellulose	binding	domain
NYN	PF01936.18	gi|564289234|ref|YP_008875470.1|	-	1.6e-37	129.3	0.1	1.9e-37	129.0	0.1	1.0	1	0	0	1	1	1	1	NYN	domain
FMO-like	PF00743.19	gi|564289234|ref|YP_008875470.1|	-	0.028	12.9	0.1	0.037	12.5	0.1	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
Clathrin	PF00637.20	gi|564289234|ref|YP_008875470.1|	-	0.033	14.0	0.0	0.054	13.4	0.0	1.3	1	0	0	1	1	1	0	Region	in	Clathrin	and	VPS
TGT_C2	PF14810.6	gi|564289236|ref|YP_008875472.1|	-	2.4e-21	75.7	0.4	4.2e-21	74.8	0.4	1.4	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.20	gi|564289236|ref|YP_008875472.1|	-	8.4e-13	48.1	0.0	1.1e-12	47.7	0.0	1.2	1	0	0	1	1	1	1	PUA	domain
DUF3244	PF11589.8	gi|564289237|ref|YP_008875473.1|	-	0.011	15.8	0.0	0.015	15.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3244)
DUF4981	PF16353.5	gi|564289237|ref|YP_008875473.1|	-	0.22	12.0	0.7	1.7	9.2	0.1	2.4	2	1	1	3	3	3	0	Domain	of	unknown	function(DUF4981)
Big_9	PF17963.1	gi|564289237|ref|YP_008875473.1|	-	0.33	11.7	8.3	0.55	11.0	8.3	1.4	1	0	0	1	1	1	0	Bacterial	Ig	domain
Big_3_5	PF16640.5	gi|564289237|ref|YP_008875473.1|	-	0.7	10.1	8.9	0.065	13.4	1.9	2.1	1	1	1	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
Mem_trans	PF03547.18	gi|564289238|ref|YP_008875474.1|	-	6.7e-26	90.6	23.3	2.5e-13	49.2	3.8	2.0	1	1	1	2	2	2	2	Membrane	transport	protein
TMEM220	PF15071.6	gi|564289238|ref|YP_008875474.1|	-	0.18	12.6	0.0	0.18	12.6	0.0	2.9	3	2	1	4	4	4	0	Transmembrane	family	220,	helix
NAC	PF01849.18	gi|564289239|ref|YP_008875475.1|	-	3.1e-18	65.5	0.4	4.7e-18	64.9	0.4	1.3	1	0	0	1	1	1	1	NAC	domain
UBA_4	PF14555.6	gi|564289239|ref|YP_008875475.1|	-	0.00014	21.6	0.4	0.00028	20.7	0.4	1.5	1	0	0	1	1	1	1	UBA-like	domain
UBA	PF00627.31	gi|564289239|ref|YP_008875475.1|	-	0.0058	16.5	1.1	0.0058	16.5	1.1	2.1	3	0	0	3	3	3	1	UBA/TS-N	domain
CUE	PF02845.16	gi|564289239|ref|YP_008875475.1|	-	0.062	13.0	0.2	0.13	12.0	0.2	1.5	1	0	0	1	1	1	0	CUE	domain
GCD14	PF08704.10	gi|564289240|ref|YP_008875476.1|	-	9e-12	45.2	0.0	2.5e-08	33.9	0.0	2.1	1	1	1	2	2	2	2	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.6	gi|564289240|ref|YP_008875476.1|	-	3.9e-07	30.0	0.0	5.1e-07	29.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564289240|ref|YP_008875476.1|	-	8.6e-07	29.6	0.1	1.4e-06	28.9	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|564289240|ref|YP_008875476.1|	-	9.7e-07	28.7	0.1	1.3e-06	28.3	0.1	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.13	gi|564289240|ref|YP_008875476.1|	-	2.8e-06	27.0	0.2	3.4e-06	26.7	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|564289240|ref|YP_008875476.1|	-	7e-06	26.6	0.1	1.2e-05	25.9	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564289240|ref|YP_008875476.1|	-	2.4e-05	24.2	0.0	2.8e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|564289240|ref|YP_008875476.1|	-	5.2e-05	22.5	0.0	7.4e-05	21.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_24	PF13578.6	gi|564289240|ref|YP_008875476.1|	-	8.3e-05	23.6	0.1	0.00013	22.9	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564289240|ref|YP_008875476.1|	-	9e-05	22.1	0.1	0.00018	21.1	0.2	1.4	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_3	PF01596.17	gi|564289240|ref|YP_008875476.1|	-	0.00051	19.3	0.0	0.0007	18.8	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
CMAS	PF02353.20	gi|564289240|ref|YP_008875476.1|	-	0.0018	17.6	0.0	0.0024	17.2	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|564289240|ref|YP_008875476.1|	-	0.029	14.3	0.1	0.047	13.6	0.1	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|564289240|ref|YP_008875476.1|	-	0.053	13.1	0.0	0.063	12.9	0.0	1.1	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Methyltransf_12	PF08242.12	gi|564289240|ref|YP_008875476.1|	-	0.1	13.4	0.0	0.16	12.7	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF726	PF05277.12	gi|564289240|ref|YP_008875476.1|	-	0.17	10.8	0.1	0.23	10.4	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF726)
TFIIS_C	PF01096.18	gi|564289244|ref|YP_008875480.1|	-	2.2e-17	62.6	5.6	2.2e-17	62.6	5.6	3.1	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|564289244|ref|YP_008875480.1|	-	9.1e-08	31.9	1.6	9.1e-08	31.9	1.6	3.2	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.7	gi|564289244|ref|YP_008875480.1|	-	5.8e-06	26.2	7.2	7e-05	22.7	0.8	2.4	2	1	0	2	2	2	1	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564289244|ref|YP_008875480.1|	-	0.00011	21.7	12.7	0.00031	20.2	0.4	3.3	2	1	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|564289244|ref|YP_008875480.1|	-	0.00024	20.9	13.0	0.015	15.2	2.1	2.5	2	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
DZR	PF12773.7	gi|564289244|ref|YP_008875480.1|	-	0.0011	18.9	11.3	0.0056	16.7	0.9	2.8	2	1	1	3	3	3	1	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|564289244|ref|YP_008875480.1|	-	0.0038	17.1	12.1	0.25	11.3	3.3	3.5	2	2	0	2	2	2	2	Nudix	N-terminal
PhnA_Zn_Ribbon	PF08274.12	gi|564289244|ref|YP_008875480.1|	-	0.01	15.8	10.9	0.44	10.6	1.4	3.7	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
Ribosomal_S27	PF01599.19	gi|564289244|ref|YP_008875480.1|	-	0.011	15.8	5.4	0.064	13.4	2.3	2.5	2	0	0	2	2	2	0	Ribosomal	protein	S27a
zf-ribbon_3	PF13248.6	gi|564289244|ref|YP_008875480.1|	-	0.011	15.1	13.3	0.045	13.2	2.1	3.2	3	1	0	3	3	3	0	zinc-ribbon	domain
DUF2387	PF09526.10	gi|564289244|ref|YP_008875480.1|	-	0.012	15.7	10.4	0.044	13.9	1.6	2.3	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
TerY_C	PF15616.6	gi|564289244|ref|YP_008875480.1|	-	0.017	15.3	6.8	0.18	12.0	0.3	2.1	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
zf-RRN7	PF11781.8	gi|564289244|ref|YP_008875480.1|	-	0.018	14.7	11.1	0.63	9.8	0.4	4.2	4	0	0	4	4	4	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
FdhE	PF04216.12	gi|564289244|ref|YP_008875480.1|	-	0.039	13.8	0.1	0.039	13.8	0.1	2.1	1	1	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
HypA	PF01155.19	gi|564289244|ref|YP_008875480.1|	-	0.044	13.8	11.7	0.35	10.9	2.1	2.8	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF3268	PF11672.8	gi|564289244|ref|YP_008875480.1|	-	0.052	13.9	0.4	0.052	13.9	0.4	2.2	2	1	0	2	2	2	0	zinc-finger-containing	domain
DUF2752	PF10825.8	gi|564289244|ref|YP_008875480.1|	-	0.058	13.5	1.0	0.084	12.9	0.0	1.7	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF2752)
DUF3797	PF12677.7	gi|564289244|ref|YP_008875480.1|	-	0.068	13.1	6.0	0.12	12.3	0.6	2.8	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Prok-RING_1	PF14446.6	gi|564289244|ref|YP_008875480.1|	-	0.097	12.6	7.3	0.16	11.9	0.5	3.0	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	1
zf-RING_4	PF14570.6	gi|564289244|ref|YP_008875480.1|	-	0.19	11.6	9.5	8	6.3	0.1	3.2	3	0	0	3	3	3	0	RING/Ubox	like	zinc-binding	domain
zinc-ribbons_6	PF07191.12	gi|564289244|ref|YP_008875480.1|	-	0.2	11.7	11.9	0.4	10.7	1.4	2.7	2	1	1	3	3	3	0	zinc-ribbons
zf-RING_7	PF02591.15	gi|564289244|ref|YP_008875480.1|	-	0.29	11.4	14.3	4.8	7.4	0.8	4.1	4	1	0	4	4	4	0	C4-type	zinc	ribbon	domain
Zn_ribbon_SprT	PF17283.2	gi|564289244|ref|YP_008875480.1|	-	0.43	10.5	6.4	6.3	6.8	0.2	2.9	3	0	0	3	3	3	0	SprT-like	zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|564289244|ref|YP_008875480.1|	-	0.53	9.9	13.1	0.63	9.7	0.3	3.9	3	1	1	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zf-UBP	PF02148.19	gi|564289244|ref|YP_008875480.1|	-	1.4	9.3	6.3	1.5	9.2	0.9	2.3	2	0	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
zf-RING_5	PF14634.6	gi|564289244|ref|YP_008875480.1|	-	1.6	8.7	8.6	12	6.0	1.7	2.8	2	2	1	3	3	3	0	zinc-RING	finger	domain
Rubredoxin_2	PF18073.1	gi|564289244|ref|YP_008875480.1|	-	1.7	8.5	16.3	1.5	8.6	0.6	4.0	4	0	0	4	4	4	0	Rubredoxin	metal	binding	domain
zf-piccolo	PF05715.13	gi|564289244|ref|YP_008875480.1|	-	1.8	8.8	10.9	4.2	7.6	1.3	3.1	2	2	0	2	2	2	0	Piccolo	Zn-finger
zf_C2HC_14	PF18574.1	gi|564289244|ref|YP_008875480.1|	-	1.8	8.4	6.8	4	7.3	0.1	3.0	3	0	0	3	3	3	0	C2HC	Zing	finger	domain
DUF2072	PF09845.9	gi|564289244|ref|YP_008875480.1|	-	1.8	8.8	11.7	3.5	7.9	2.4	2.7	1	1	1	2	2	2	0	Zn-ribbon	containing	protein
Ribosomal_L32p	PF01783.23	gi|564289244|ref|YP_008875480.1|	-	2.3	8.5	6.1	3.3	8.0	0.3	2.7	3	1	0	3	3	2	0	Ribosomal	L32p	protein	family
zinc_ribbon_4	PF13717.6	gi|564289244|ref|YP_008875480.1|	-	3	7.8	12.3	1.5	8.8	5.4	3.3	2	2	1	3	3	3	0	zinc-ribbon	domain
zf-ZPR1	PF03367.13	gi|564289244|ref|YP_008875480.1|	-	3.9	7.3	8.9	0.41	10.5	0.5	2.4	3	0	0	3	3	2	0	ZPR1	zinc-finger	domain
zinc_ribbon_2	PF13240.6	gi|564289244|ref|YP_008875480.1|	-	4.8	7.0	17.9	2.2	8.1	1.1	3.9	3	1	1	4	4	4	0	zinc-ribbon	domain
zf-ISL3	PF14690.6	gi|564289244|ref|YP_008875480.1|	-	4.9	7.9	12.0	49	4.7	3.8	3.8	2	2	1	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DNA_RNApol_7kD	PF03604.13	gi|564289244|ref|YP_008875480.1|	-	5.8	6.7	12.1	9.9	5.9	0.1	4.0	3	1	0	4	4	4	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
MASE1	PF05231.14	gi|564291306|ref|YP_008875485.1|	-	0.016	14.4	0.2	0.016	14.3	0.2	1.0	1	0	0	1	1	1	0	MASE1
Creatininase	PF02633.14	gi|564289249|ref|YP_008875486.1|	-	2.6e-66	223.5	0.1	3e-66	223.3	0.1	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
Alpha-amylase	PF00128.24	gi|564289250|ref|YP_008875487.1|	-	1.5e-114	383.1	2.3	2e-114	382.6	2.3	1.1	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Malt_amylase_C	PF16657.5	gi|564289250|ref|YP_008875487.1|	-	5.7e-07	29.6	0.0	1.3e-06	28.4	0.0	1.7	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
hDGE_amylase	PF14701.6	gi|564289250|ref|YP_008875487.1|	-	0.0011	18.1	0.0	0.0017	17.6	0.0	1.1	1	0	0	1	1	1	1	Glycogen	debranching	enzyme,	glucanotransferase	domain
DUF3459	PF11941.8	gi|564289250|ref|YP_008875487.1|	-	0.082	13.2	0.0	0.19	12.1	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3459)
Peptidase_M24	PF00557.24	gi|564289251|ref|YP_008875488.1|	-	4.2e-10	39.7	0.3	6.3e-10	39.1	0.3	1.3	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|564289251|ref|YP_008875488.1|	-	0.048	14.3	0.1	0.42	11.3	0.1	2.3	1	1	0	1	1	1	0	Creatinase/Prolidase	N-terminal	domain
IU_nuc_hydro	PF01156.19	gi|564289252|ref|YP_008875489.1|	-	7e-74	249.1	0.1	8e-74	248.9	0.1	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
OCD_Mu_crystall	PF02423.15	gi|564289253|ref|YP_008875490.1|	-	4.1e-97	325.0	0.4	4.6e-97	324.8	0.4	1.0	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
S1	PF00575.23	gi|564289254|ref|YP_008875491.1|	-	0.00085	19.6	0.1	0.54	10.6	0.1	2.1	1	1	1	2	2	2	2	S1	RNA	binding	domain
TRAM	PF01938.20	gi|564289254|ref|YP_008875491.1|	-	0.008	16.1	0.1	0.0099	15.9	0.1	1.1	1	0	0	1	1	1	1	TRAM	domain
Na_H_antiporter	PF03553.14	gi|564289255|ref|YP_008875492.1|	-	3.8e-32	111.7	47.9	6.2e-20	71.6	19.2	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
IclR	PF01614.18	gi|564289256|ref|YP_008875493.1|	-	5.8e-26	90.8	0.0	1.2e-25	89.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564289256|ref|YP_008875493.1|	-	5.8e-08	32.4	0.8	4.2e-07	29.7	0.3	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564289256|ref|YP_008875493.1|	-	1.7e-07	31.0	0.2	3.3e-07	30.1	0.2	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564289256|ref|YP_008875493.1|	-	2.5e-06	26.9	0.1	5e-06	26.0	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564289256|ref|YP_008875493.1|	-	1.8e-05	24.5	0.6	0.0007	19.4	0.1	3.0	3	0	0	3	3	3	1	MarR	family
HTH_20	PF12840.7	gi|564289256|ref|YP_008875493.1|	-	7.1e-05	22.8	0.2	0.00017	21.6	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|564289256|ref|YP_008875493.1|	-	0.00011	22.1	0.2	0.0002	21.2	0.2	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564289256|ref|YP_008875493.1|	-	0.00054	19.9	0.1	0.0053	16.7	0.1	2.6	3	0	0	3	3	3	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|564289256|ref|YP_008875493.1|	-	0.00071	19.4	0.3	0.0098	15.7	0.2	2.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_45	PF14947.6	gi|564289256|ref|YP_008875493.1|	-	0.011	15.7	0.4	0.029	14.3	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|564289256|ref|YP_008875493.1|	-	0.018	15.2	0.1	0.032	14.4	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|564289256|ref|YP_008875493.1|	-	0.023	14.6	0.0	0.44	10.5	0.0	2.4	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|564289256|ref|YP_008875493.1|	-	0.031	14.0	0.1	0.081	12.7	0.1	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_10	PF04967.12	gi|564289256|ref|YP_008875493.1|	-	0.045	13.6	0.1	0.16	11.8	0.1	1.8	2	0	0	2	2	2	0	HTH	DNA	binding	domain
GerE	PF00196.19	gi|564289256|ref|YP_008875493.1|	-	0.048	13.2	0.0	0.085	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_27	PF13463.6	gi|564289256|ref|YP_008875493.1|	-	0.052	14.0	0.3	0.17	12.4	0.3	1.9	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|564289256|ref|YP_008875493.1|	-	0.064	13.5	0.1	0.15	12.3	0.1	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.12	gi|564289257|ref|YP_008875494.1|	-	6.5e-20	70.7	0.1	1.2e-19	69.8	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_20	PF12840.7	gi|564289257|ref|YP_008875494.1|	-	0.0083	16.2	0.0	0.023	14.8	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
UPF0122	PF04297.14	gi|564289257|ref|YP_008875494.1|	-	0.017	15.3	0.0	0.033	14.4	0.0	1.4	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_11	PF08279.12	gi|564289257|ref|YP_008875494.1|	-	0.034	14.1	0.1	0.2	11.6	0.0	2.1	2	0	0	2	2	2	0	HTH	domain
HTH_Tnp_1_2	PF13022.6	gi|564289257|ref|YP_008875494.1|	-	0.038	14.1	0.0	0.088	13.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HTH_24	PF13412.6	gi|564289257|ref|YP_008875494.1|	-	0.053	13.1	0.0	0.12	11.9	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Coat_F	PF07875.12	gi|564289257|ref|YP_008875494.1|	-	0.061	13.5	0.0	0.16	12.3	0.0	1.7	1	0	0	1	1	1	0	Coat	F	domain
Sigma70_r4_2	PF08281.12	gi|564289257|ref|YP_008875494.1|	-	0.092	12.4	0.1	0.98	9.1	0.0	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
DUF1611	PF07755.11	gi|564289258|ref|YP_008875495.1|	-	7.5e-60	201.6	0.4	7.5e-60	201.6	0.4	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
DUF1611_N	PF17396.2	gi|564289258|ref|YP_008875495.1|	-	3.5e-29	100.9	0.0	8.4e-29	99.7	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
MR_MLE_C	PF13378.6	gi|564289259|ref|YP_008875496.1|	-	1.7e-40	138.9	3.6	2.8e-40	138.3	3.6	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564289259|ref|YP_008875496.1|	-	2.4e-14	53.6	0.3	1.1e-13	51.5	0.0	2.2	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
4HFCP_synth	PF04476.13	gi|564289259|ref|YP_008875496.1|	-	0.0088	15.8	1.3	0.59	9.8	0.1	2.3	2	0	0	2	2	2	2	4-HFC-P	synthase
Bactofilin	PF04519.13	gi|564289260|ref|YP_008875497.1|	-	5.8e-13	49.0	8.8	6.3e-10	39.2	0.4	3.4	2	1	1	3	3	3	3	Polymer-forming	cytoskeletal
Hexapep	PF00132.24	gi|564289260|ref|YP_008875497.1|	-	2.4e-05	23.9	15.0	0.0014	18.2	0.1	6.3	4	2	2	6	6	6	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564289260|ref|YP_008875497.1|	-	0.042	13.6	10.1	4.5	7.1	2.7	4.4	4	1	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
FapA	PF03961.13	gi|564289260|ref|YP_008875497.1|	-	0.06	11.9	1.8	0.81	8.2	1.3	2.1	2	0	0	2	2	2	0	Flagellar	Assembly	Protein	A
LppX_LprAFG	PF07161.13	gi|564289261|ref|YP_008875498.1|	-	0.0022	17.9	1.5	0.0031	17.4	0.7	1.5	1	1	0	1	1	1	1	LppX_LprAFG	lipoprotein
DUF4440	PF14534.6	gi|564289261|ref|YP_008875498.1|	-	0.47	10.9	5.0	0.23	11.8	0.4	2.5	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF4440)
Glyco_transf_20	PF00982.21	gi|564289262|ref|YP_008875499.1|	-	2.1e-114	382.8	0.0	2.5e-114	382.6	0.0	1.0	1	0	0	1	1	1	1	Glycosyltransferase	family	20
Glycos_transf_1	PF00534.20	gi|564289262|ref|YP_008875499.1|	-	0.0018	17.8	0.0	1.2	8.6	0.0	2.5	2	1	0	2	2	2	2	Glycosyl	transferases	group	1
AAA_lid_2	PF17863.1	gi|564289262|ref|YP_008875499.1|	-	0.007	16.2	0.4	0.007	16.2	0.4	2.1	2	0	0	2	2	2	1	AAA	lid	domain
Glyco_trans_1_4	PF13692.6	gi|564289262|ref|YP_008875499.1|	-	0.017	15.5	0.0	0.036	14.5	0.0	1.6	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
MAF_flag10	PF01973.18	gi|564289263|ref|YP_008875500.1|	-	1e-16	61.1	0.0	1.4e-16	60.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
Bac_luciferase	PF00296.20	gi|564289264|ref|YP_008875501.1|	-	9.7e-83	278.2	1.3	1.2e-82	277.9	1.3	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
PALP	PF00291.25	gi|564289264|ref|YP_008875501.1|	-	0.048	13.1	0.0	0.084	12.3	0.0	1.3	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
HAD_2	PF13419.6	gi|564289265|ref|YP_008875502.1|	-	6.1e-13	49.2	0.0	9.2e-13	48.7	0.0	1.3	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564289265|ref|YP_008875502.1|	-	7.1e-10	39.5	0.5	2.4e-09	37.8	0.5	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564289265|ref|YP_008875502.1|	-	0.0045	17.0	0.2	0.012	15.7	0.0	1.9	2	0	0	2	2	2	1	HAD-hyrolase-like
TrkA_N	PF02254.18	gi|564289266|ref|YP_008875503.1|	-	4.1e-26	91.5	0.2	7.1e-26	90.7	0.2	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564289266|ref|YP_008875503.1|	-	3.9e-08	33.0	1.4	7.3e-08	32.1	0.4	1.9	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|564289266|ref|YP_008875503.1|	-	2.3e-07	31.2	0.0	3.8e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.17	gi|564289266|ref|YP_008875503.1|	-	6.9e-05	23.4	0.5	0.0013	19.2	0.0	2.5	2	1	1	3	3	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.6	gi|564289266|ref|YP_008875503.1|	-	0.00014	21.9	0.1	0.00019	21.4	0.1	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|564289266|ref|YP_008875503.1|	-	0.00032	20.2	0.0	0.00045	19.8	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Pyr_redox_2	PF07992.14	gi|564289266|ref|YP_008875503.1|	-	0.00035	19.9	0.0	0.00047	19.5	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|564289266|ref|YP_008875503.1|	-	0.001	18.7	0.0	0.0017	18.0	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|564289266|ref|YP_008875503.1|	-	0.0031	17.4	0.1	0.0047	16.8	0.1	1.6	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|564289266|ref|YP_008875503.1|	-	0.004	16.8	0.0	0.0054	16.4	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
XdhC_C	PF13478.6	gi|564289266|ref|YP_008875503.1|	-	0.0046	17.4	0.1	0.011	16.2	0.1	1.7	2	0	0	2	2	2	1	XdhC	Rossmann	domain
Trp_halogenase	PF04820.14	gi|564289266|ref|YP_008875503.1|	-	0.0093	14.9	0.1	0.039	12.8	0.0	1.8	1	1	1	2	2	2	1	Tryptophan	halogenase
Sacchrp_dh_NADP	PF03435.18	gi|564289266|ref|YP_008875503.1|	-	0.014	15.7	0.1	0.025	14.8	0.1	1.5	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
adh_short_C2	PF13561.6	gi|564289266|ref|YP_008875503.1|	-	0.017	14.7	0.2	0.041	13.4	0.2	1.6	1	1	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
LpxI_N	PF17930.1	gi|564289266|ref|YP_008875503.1|	-	0.03	14.2	0.0	0.063	13.2	0.0	1.5	1	1	0	1	1	1	0	LpxI	N-terminal	domain
DAO	PF01266.24	gi|564289266|ref|YP_008875503.1|	-	0.034	13.7	0.1	0.042	13.4	0.1	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
adh_short	PF00106.25	gi|564289266|ref|YP_008875503.1|	-	0.036	13.5	0.0	0.055	12.9	0.0	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
Pyr_redox	PF00070.27	gi|564289266|ref|YP_008875503.1|	-	0.051	14.1	0.1	0.089	13.4	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.21	gi|564289266|ref|YP_008875503.1|	-	0.06	13.4	0.0	0.095	12.8	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|564289266|ref|YP_008875503.1|	-	0.16	12.2	0.0	0.21	11.7	0.0	1.4	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AA_permease_2	PF13520.6	gi|564289267|ref|YP_008875504.1|	-	2e-52	178.5	41.4	2.5e-52	178.2	41.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564289267|ref|YP_008875504.1|	-	1.2e-43	149.5	38.3	1.5e-43	149.1	38.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|564289267|ref|YP_008875504.1|	-	2.5e-05	23.3	17.3	0.00021	20.2	3.5	2.4	3	0	0	3	3	3	2	Spore	germination	protein
Trp_Tyr_perm	PF03222.13	gi|564289267|ref|YP_008875504.1|	-	1.4	7.9	36.7	0.23	10.5	27.8	2.9	1	1	0	2	2	2	0	Tryptophan/tyrosine	permease	family
TrkA_N	PF02254.18	gi|564289268|ref|YP_008875505.1|	-	8.4e-25	87.3	0.9	1.4e-24	86.6	0.9	1.4	1	0	0	1	1	1	1	TrkA-N	domain
Pyr_redox	PF00070.27	gi|564289268|ref|YP_008875505.1|	-	1.4e-07	31.9	0.1	2.7e-07	31.0	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_10	PF13460.6	gi|564289268|ref|YP_008875505.1|	-	1.6e-07	31.4	0.4	2.6e-07	30.7	0.4	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
TrkA_C	PF02080.21	gi|564289268|ref|YP_008875505.1|	-	5.7e-07	29.3	1.7	1e-06	28.5	0.1	2.2	2	0	0	2	2	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|564289268|ref|YP_008875505.1|	-	8.3e-06	26.2	0.1	1.7e-05	25.2	0.1	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|564289268|ref|YP_008875505.1|	-	4.5e-05	22.8	0.0	8.4e-05	21.9	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|564289268|ref|YP_008875505.1|	-	0.0002	20.7	0.1	0.00047	19.5	0.1	1.5	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564289268|ref|YP_008875505.1|	-	0.00056	20.1	0.3	0.0089	16.2	0.1	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564289268|ref|YP_008875505.1|	-	0.0013	18.4	0.2	0.0025	17.4	0.2	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DAO	PF01266.24	gi|564289268|ref|YP_008875505.1|	-	0.0013	18.4	0.9	0.002	17.8	0.9	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NmrA	PF05368.13	gi|564289268|ref|YP_008875505.1|	-	0.0016	18.0	0.2	0.0024	17.5	0.2	1.2	1	0	0	1	1	1	1	NmrA-like	family
3HCDH_N	PF02737.18	gi|564289268|ref|YP_008875505.1|	-	0.0026	17.7	0.1	0.0048	16.8	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564289268|ref|YP_008875505.1|	-	0.0066	16.7	0.4	0.011	16.0	0.4	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Thi4	PF01946.17	gi|564289268|ref|YP_008875505.1|	-	0.0071	15.6	0.4	0.073	12.3	0.1	2.1	2	0	0	2	2	2	1	Thi4	family
Epimerase	PF01370.21	gi|564289268|ref|YP_008875505.1|	-	0.011	15.2	0.1	0.014	14.9	0.1	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
adh_short_C2	PF13561.6	gi|564289268|ref|YP_008875505.1|	-	0.013	15.1	0.3	0.033	13.7	0.2	1.7	1	1	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
HI0933_like	PF03486.14	gi|564289268|ref|YP_008875505.1|	-	0.016	13.9	0.1	0.024	13.4	0.1	1.2	1	0	0	1	1	1	0	HI0933-like	protein
XdhC_C	PF13478.6	gi|564289268|ref|YP_008875505.1|	-	0.027	15.0	0.3	0.18	12.3	0.1	2.0	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Trp_halogenase	PF04820.14	gi|564289268|ref|YP_008875505.1|	-	0.031	13.1	0.1	0.039	12.8	0.1	1.1	1	0	0	1	1	1	0	Tryptophan	halogenase
LpxI_N	PF17930.1	gi|564289268|ref|YP_008875505.1|	-	0.039	13.9	0.0	0.096	12.6	0.0	1.6	1	0	0	1	1	1	0	LpxI	N-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564289268|ref|YP_008875505.1|	-	0.039	13.9	0.0	0.073	13.0	0.0	1.6	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_2	PF00890.24	gi|564289268|ref|YP_008875505.1|	-	0.043	12.9	0.6	0.039	13.0	0.6	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Glyco_trans_4_4	PF13579.6	gi|564289268|ref|YP_008875505.1|	-	0.057	13.9	0.6	0.84	10.1	0.6	2.4	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
AlaDh_PNT_C	PF01262.21	gi|564289268|ref|YP_008875505.1|	-	0.065	12.5	0.4	0.099	11.9	0.4	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ApbA	PF02558.16	gi|564289268|ref|YP_008875505.1|	-	0.071	12.8	0.1	0.15	11.7	0.1	1.5	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Glyco_transf_4	PF13439.6	gi|564289268|ref|YP_008875505.1|	-	0.086	12.8	0.2	0.32	11.0	0.1	2.2	2	1	0	2	2	2	0	Glycosyltransferase	Family	4
Pterin_bind	PF00809.22	gi|564289269|ref|YP_008875506.1|	-	2.5e-35	122.3	0.0	4.7e-35	121.4	0.0	1.4	1	1	0	1	1	1	1	Pterin	binding	enzyme
HATPase_c	PF02518.26	gi|564289270|ref|YP_008875507.1|	-	6.1e-15	55.7	0.0	1.1e-14	54.9	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564289270|ref|YP_008875507.1|	-	2.6e-12	46.6	0.1	9.5e-12	44.8	0.1	2.0	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|564289270|ref|YP_008875507.1|	-	1.6e-09	38.2	0.6	3.4e-09	37.1	0.1	1.8	2	1	1	3	3	3	1	GAF	domain
GAF_3	PF13492.6	gi|564289270|ref|YP_008875507.1|	-	7.3e-09	36.1	0.0	1.3e-08	35.3	0.0	1.4	1	0	0	1	1	1	1	GAF	domain
MRG	PF05712.13	gi|564289270|ref|YP_008875507.1|	-	0.12	11.6	0.0	0.19	11.0	0.0	1.3	1	0	0	1	1	1	0	MRG
APH	PF01636.23	gi|564289271|ref|YP_008875508.1|	-	3.7e-24	86.0	2.2	4.1e-24	85.8	1.5	1.4	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Fructosamin_kin	PF03881.14	gi|564289271|ref|YP_008875508.1|	-	1.4e-07	31.1	0.0	3.9e-07	29.5	0.0	1.7	1	1	0	1	1	1	1	Fructosamine	kinase
DUF1679	PF07914.11	gi|564289271|ref|YP_008875508.1|	-	0.0067	15.3	0.0	0.011	14.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1679)
PfkB	PF00294.24	gi|564289272|ref|YP_008875509.1|	-	4.7e-44	150.9	3.4	1.1e-43	149.6	3.4	1.5	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
CARDB	PF07705.11	gi|564289273|ref|YP_008875510.1|	-	2.2e-05	24.6	18.7	0.035	14.3	1.4	4.6	4	2	0	4	4	4	3	CARDB
Transglut_C	PF00927.22	gi|564289273|ref|YP_008875510.1|	-	0.0001	22.4	0.1	0.092	12.9	0.0	3.1	3	0	0	3	3	3	2	Transglutaminase	family,	C-terminal	ig	like	domain
Abhydrolase_8	PF06259.12	gi|564289273|ref|YP_008875510.1|	-	0.15	11.7	4.2	1.9	8.1	1.9	3.0	2	1	2	4	4	4	0	Alpha/beta	hydrolase
MG4	PF17789.1	gi|564289273|ref|YP_008875510.1|	-	1.2	9.4	8.4	8.5	6.6	0.3	3.5	3	1	0	3	3	3	0	Macroglobulin	domain	MG4
NPCBM_assoc	PF10633.9	gi|564289273|ref|YP_008875510.1|	-	2	8.7	15.6	5.2	7.4	0.1	4.9	5	2	1	6	6	6	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
ABC_tran	PF00005.27	gi|564289274|ref|YP_008875511.1|	-	3e-34	118.5	0.0	3.8e-34	118.1	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289274|ref|YP_008875511.1|	-	1.4e-06	28.4	0.2	0.021	14.7	0.1	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|564289274|ref|YP_008875511.1|	-	0.00018	21.8	0.6	0.0018	18.6	0.6	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|564289274|ref|YP_008875511.1|	-	0.00053	19.6	0.2	0.15	11.6	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|564289274|ref|YP_008875511.1|	-	0.0018	18.0	0.1	0.0038	16.9	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564289274|ref|YP_008875511.1|	-	0.0021	18.5	0.4	0.007	16.8	0.4	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564289274|ref|YP_008875511.1|	-	0.0021	18.0	0.2	0.0062	16.5	0.0	1.7	2	0	0	2	2	2	1	RsgA	GTPase
SMC_N	PF02463.19	gi|564289274|ref|YP_008875511.1|	-	0.0046	16.4	0.0	1.4	8.3	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|564289274|ref|YP_008875511.1|	-	0.0098	16.4	0.1	0.021	15.3	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|564289274|ref|YP_008875511.1|	-	0.022	13.8	0.1	0.032	13.3	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.6	gi|564289274|ref|YP_008875511.1|	-	0.026	14.3	0.2	0.049	13.3	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|564289274|ref|YP_008875511.1|	-	0.044	13.9	0.4	0.14	12.3	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|564289274|ref|YP_008875511.1|	-	0.099	12.2	0.3	0.19	11.3	0.3	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
IstB_IS21	PF01695.17	gi|564289274|ref|YP_008875511.1|	-	0.12	12.1	0.0	0.22	11.2	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_28	PF13521.6	gi|564289274|ref|YP_008875511.1|	-	0.12	12.6	0.3	0.24	11.6	0.3	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564289274|ref|YP_008875511.1|	-	0.15	12.7	0.4	0.31	11.6	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564289274|ref|YP_008875511.1|	-	0.15	12.2	0.4	1.2	9.3	0.1	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
PhoH	PF02562.16	gi|564289274|ref|YP_008875511.1|	-	0.19	11.1	0.7	0.8	9.1	0.1	2.0	2	0	0	2	2	2	0	PhoH-like	protein
NB-ARC	PF00931.22	gi|564289274|ref|YP_008875511.1|	-	0.22	10.7	0.0	0.37	9.9	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|564289274|ref|YP_008875511.1|	-	0.24	11.8	0.1	3	8.3	0.0	2.3	2	1	0	2	2	2	0	RNA	helicase
MacB_PCD	PF12704.7	gi|564289275|ref|YP_008875512.1|	-	2.4e-21	77.0	1.3	2.4e-21	77.0	1.3	2.2	3	0	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|564289275|ref|YP_008875512.1|	-	1.3e-13	51.2	6.1	2.5e-12	47.1	0.3	3.1	3	0	0	3	3	3	2	FtsX-like	permease	family
Meth_synt_2	PF01717.18	gi|564289277|ref|YP_008875514.1|	-	1e-58	199.2	0.0	1.5e-58	198.7	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.12	gi|564289277|ref|YP_008875514.1|	-	1.4e-12	47.8	0.1	2.1e-12	47.2	0.1	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.17	gi|564289277|ref|YP_008875514.1|	-	1.5e-07	30.9	0.0	2e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
Corona_6B_7B	PF03262.13	gi|564289277|ref|YP_008875514.1|	-	0.063	12.7	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	Coronavirus	6B/7B	protein
Meth_synt_1	PF08267.12	gi|564289278|ref|YP_008875515.1|	-	8.5e-15	55.1	0.0	2e-13	50.6	0.0	2.1	1	1	1	2	2	2	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.18	gi|564289278|ref|YP_008875515.1|	-	1e-12	48.0	0.4	1.3e-12	47.7	0.4	1.1	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
NAD_binding_5	PF07994.12	gi|564289278|ref|YP_008875515.1|	-	0.0098	15.3	0.2	0.017	14.6	0.1	1.4	2	0	0	2	2	2	1	Myo-inositol-1-phosphate	synthase
Methyltransf_11	PF08241.12	gi|564289279|ref|YP_008875516.1|	-	5.4e-09	36.6	0.0	6.9e-08	33.0	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|564289279|ref|YP_008875516.1|	-	2e-08	34.0	0.0	1.4e-07	31.2	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.6	gi|564289279|ref|YP_008875516.1|	-	2.1e-08	34.7	0.0	9.3e-08	32.7	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564289279|ref|YP_008875516.1|	-	3.6e-07	30.1	0.0	6e-07	29.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564289279|ref|YP_008875516.1|	-	2e-06	27.7	0.0	3.3e-06	27.0	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|564289279|ref|YP_008875516.1|	-	3.6e-06	26.7	0.0	5.4e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
PrmA	PF06325.13	gi|564289279|ref|YP_008875516.1|	-	5.5e-06	26.0	0.5	8.3e-06	25.4	0.5	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|564289279|ref|YP_008875516.1|	-	0.00014	21.6	0.0	0.00021	21.1	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.7	gi|564289279|ref|YP_008875516.1|	-	0.00066	19.6	0.0	0.0095	15.9	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564289279|ref|YP_008875516.1|	-	0.00078	20.1	0.0	0.0025	18.5	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
N6_N4_Mtase	PF01555.18	gi|564289279|ref|YP_008875516.1|	-	0.0014	18.4	0.0	0.0058	16.4	0.0	1.8	2	0	0	2	2	2	1	DNA	methylase
Methyltransf_32	PF13679.6	gi|564289279|ref|YP_008875516.1|	-	0.0028	17.7	0.0	0.0041	17.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|564289279|ref|YP_008875516.1|	-	0.0033	16.8	0.0	0.0068	15.7	0.0	1.4	2	0	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
TPMT	PF05724.11	gi|564289279|ref|YP_008875516.1|	-	0.007	16.0	0.1	0.023	14.4	0.0	1.8	2	1	1	3	3	3	1	Thiopurine	S-methyltransferase	(TPMT)
TrkA_N	PF02254.18	gi|564289279|ref|YP_008875516.1|	-	0.023	14.9	0.0	0.064	13.5	0.0	1.7	2	0	0	2	2	2	0	TrkA-N	domain
FtsJ	PF01728.19	gi|564289279|ref|YP_008875516.1|	-	0.061	13.4	0.0	0.11	12.6	0.0	1.3	2	0	0	2	2	2	0	FtsJ-like	methyltransferase
Methyltransf_9	PF08003.11	gi|564289279|ref|YP_008875516.1|	-	0.15	11.0	0.0	0.25	10.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
UPF0146	PF03686.13	gi|564289279|ref|YP_008875516.1|	-	0.17	11.8	0.1	0.28	11.1	0.1	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
RrnaAD	PF00398.20	gi|564289280|ref|YP_008875517.1|	-	2.7e-45	154.5	0.0	3e-45	154.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_25	PF13649.6	gi|564289280|ref|YP_008875517.1|	-	8e-06	26.5	0.0	1.7e-05	25.4	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564289280|ref|YP_008875517.1|	-	0.0012	19.4	0.0	0.0027	18.3	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564289280|ref|YP_008875517.1|	-	0.0021	18.7	0.0	0.0057	17.4	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.11	gi|564289280|ref|YP_008875517.1|	-	0.046	13.3	0.0	0.097	12.3	0.0	1.5	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Glyco_hydro_4C	PF11975.8	gi|564289280|ref|YP_008875517.1|	-	0.055	13.6	0.0	0.089	12.9	0.0	1.4	1	0	0	1	1	1	0	Family	4	glycosyl	hydrolase	C-terminal	domain
PRMT5	PF05185.16	gi|564289280|ref|YP_008875517.1|	-	0.16	11.8	0.0	0.24	11.2	0.0	1.2	1	0	0	1	1	1	0	PRMT5	arginine-N-methyltransferase
Methyltransf_PK	PF05891.12	gi|564289280|ref|YP_008875517.1|	-	0.25	10.8	0.0	0.39	10.2	0.0	1.3	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
DUF655	PF04919.12	gi|564289281|ref|YP_008875518.1|	-	1.8e-59	200.7	0.2	2.2e-59	200.5	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_3	PF12836.7	gi|564289281|ref|YP_008875518.1|	-	0.001	19.3	0.0	0.0052	17.0	0.0	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_6	PF14579.6	gi|564289281|ref|YP_008875518.1|	-	0.0012	19.1	0.1	0.0034	17.6	0.1	1.7	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
RNA_pol_Rpb4	PF03874.16	gi|564289282|ref|YP_008875519.1|	-	5.7e-13	49.3	3.3	7.1e-13	49.0	3.3	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
Gluconate_2-dh3	PF13618.6	gi|564289282|ref|YP_008875519.1|	-	0.12	12.6	2.3	2	8.7	0.1	2.6	1	1	2	3	3	3	0	Gluconate	2-dehydrogenase	subunit	3
Ribosomal_L21e	PF01157.18	gi|564289283|ref|YP_008875520.1|	-	9.6e-30	102.4	0.0	1e-29	102.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
EF1_GNE	PF00736.19	gi|564289284|ref|YP_008875521.1|	-	7.6e-21	74.1	0.0	8.9e-21	73.9	0.0	1.1	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF1610	PF07754.11	gi|564289285|ref|YP_008875522.1|	-	5.6e-07	29.4	3.9	5.6e-07	29.4	3.9	2.4	3	0	0	3	3	2	1	Domain	of	unknown	function	(DUF1610)
zf-ACC	PF17848.1	gi|564289285|ref|YP_008875522.1|	-	0.00032	20.7	10.9	0.0099	15.9	0.5	3.5	3	1	0	3	3	3	1	Acetyl-coA	carboxylase	zinc	finger	domain
C1_2	PF03107.16	gi|564289285|ref|YP_008875522.1|	-	0.0006	20.1	10.8	0.037	14.4	3.5	2.1	1	1	1	2	2	2	2	C1	domain
zf-Mss51	PF13824.6	gi|564289285|ref|YP_008875522.1|	-	0.0016	18.5	11.6	1.3	9.2	5.7	3.0	1	1	1	2	2	2	2	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Zn_Tnp_IS91	PF14319.6	gi|564289285|ref|YP_008875522.1|	-	0.0027	17.7	10.5	0.0041	17.1	10.5	1.3	1	1	0	1	1	1	1	Transposase	zinc-binding	domain
Rhodanese_C	PF12368.8	gi|564289285|ref|YP_008875522.1|	-	0.0084	16.5	10.2	0.0092	16.3	10.2	1.1	1	0	0	1	1	1	1	Rhodanase	C-terminal
zf-ribbon_3	PF13248.6	gi|564289285|ref|YP_008875522.1|	-	0.012	15.0	13.6	0.75	9.3	0.2	3.5	4	0	0	4	4	4	0	zinc-ribbon	domain
C1_1	PF00130.22	gi|564289285|ref|YP_008875522.1|	-	0.012	15.4	11.4	0.016	15.1	1.4	2.5	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DZR	PF12773.7	gi|564289285|ref|YP_008875522.1|	-	0.015	15.3	14.8	0.051	13.6	2.9	2.3	1	1	1	2	2	2	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.11	gi|564289285|ref|YP_008875522.1|	-	0.021	14.8	5.7	0.021	14.8	5.7	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
DNA_RNApol_7kD	PF03604.13	gi|564289285|ref|YP_008875522.1|	-	0.028	14.1	12.7	0.42	10.3	1.8	3.2	2	2	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-CHY	PF05495.12	gi|564289285|ref|YP_008875522.1|	-	0.028	14.9	13.1	0.47	11.0	7.7	2.1	1	1	1	2	2	2	0	CHY	zinc	finger
HypA	PF01155.19	gi|564289285|ref|YP_008875522.1|	-	0.042	13.9	12.3	0.06	13.4	1.6	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-HIT	PF04438.16	gi|564289285|ref|YP_008875522.1|	-	0.046	13.6	16.5	0.41	10.6	5.5	2.9	1	1	1	2	2	2	0	HIT	zinc	finger
zinc-ribbons_6	PF07191.12	gi|564289285|ref|YP_008875522.1|	-	0.054	13.5	12.6	0.69	9.9	12.6	2.0	1	1	0	1	1	1	0	zinc-ribbons
HscB_4_cys	PF18256.1	gi|564289285|ref|YP_008875522.1|	-	0.056	13.3	1.2	0.056	13.3	1.2	2.9	2	1	1	3	3	3	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
zf-UBP	PF02148.19	gi|564289285|ref|YP_008875522.1|	-	0.086	13.2	0.7	0.086	13.2	0.7	2.4	2	1	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
NMD3	PF04981.13	gi|564289285|ref|YP_008875522.1|	-	0.11	12.0	8.9	0.11	11.9	8.9	1.0	1	0	0	1	1	1	0	NMD3	family
zf-MYND	PF01753.18	gi|564289285|ref|YP_008875522.1|	-	0.13	12.4	10.9	1.7	8.8	2.9	2.5	2	1	0	2	2	2	0	MYND	finger
Desulfoferrod_N	PF06397.12	gi|564289285|ref|YP_008875522.1|	-	0.16	11.6	15.7	5.1	6.8	0.5	4.0	1	1	3	4	4	4	0	Desulfoferrodoxin,	N-terminal	domain
zf_UBZ	PF18439.1	gi|564289285|ref|YP_008875522.1|	-	0.2	11.3	15.0	0.46	10.1	0.5	3.9	2	1	2	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_10	PF10058.9	gi|564289285|ref|YP_008875522.1|	-	0.2	11.4	12.1	5.2	6.9	0.1	3.8	2	1	2	4	4	4	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn_ribbon_SprT	PF17283.2	gi|564289285|ref|YP_008875522.1|	-	0.21	11.5	15.5	2.8	7.9	0.1	4.0	3	1	1	4	4	4	0	SprT-like	zinc	ribbon	domain
zf-UBR	PF02207.20	gi|564289285|ref|YP_008875522.1|	-	0.24	11.6	12.9	1.8	8.8	10.0	2.5	1	1	1	2	2	2	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
PolC_DP2	PF03833.13	gi|564289285|ref|YP_008875522.1|	-	0.24	9.2	8.1	0.27	9.1	8.1	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-C2HC5	PF06221.13	gi|564289285|ref|YP_008875522.1|	-	0.27	11.3	10.3	0.29	11.1	5.1	2.1	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-C2H2	PF00096.26	gi|564289285|ref|YP_008875522.1|	-	0.36	11.4	15.5	2.3	8.8	0.7	3.8	4	0	0	4	4	4	0	Zinc	finger,	C2H2	type
NMDAR2_C	PF10565.9	gi|564289285|ref|YP_008875522.1|	-	0.42	9.4	8.6	0.46	9.3	8.6	1.0	1	0	0	1	1	1	0	N-methyl	D-aspartate	receptor	2B3	C-terminus
UPF0547	PF10571.9	gi|564289285|ref|YP_008875522.1|	-	0.53	10.4	15.0	1.4	9.0	0.4	3.6	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.6	gi|564289285|ref|YP_008875522.1|	-	0.72	9.7	15.9	2	8.2	4.3	3.6	2	1	1	3	3	3	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564289285|ref|YP_008875522.1|	-	0.83	9.8	18.5	11	6.2	13.1	3.7	1	1	2	3	3	3	0	Zinc	ribbon	domain
zf-C2H2_11	PF16622.5	gi|564289285|ref|YP_008875522.1|	-	0.97	9.3	10.4	12	5.7	0.2	3.8	4	0	0	4	4	4	0	zinc-finger	C2H2-type
zf-tcix	PF14952.6	gi|564289285|ref|YP_008875522.1|	-	1.1	9.0	20.1	1.3	8.7	0.8	3.5	1	1	2	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
FYVE_2	PF02318.16	gi|564289285|ref|YP_008875522.1|	-	1.1	9.5	8.0	1.2	9.3	8.0	1.1	1	0	0	1	1	1	0	FYVE-type	zinc	finger
zf-AN1	PF01428.16	gi|564289285|ref|YP_008875522.1|	-	1.9	8.7	13.4	6.3	7.1	3.2	2.8	1	1	0	2	2	2	0	AN1-like	Zinc	finger
Rubredoxin_2	PF18073.1	gi|564289285|ref|YP_008875522.1|	-	2.6	7.8	18.5	2.8	7.8	4.2	3.8	2	2	0	2	2	2	0	Rubredoxin	metal	binding	domain
YhfH	PF14149.6	gi|564289285|ref|YP_008875522.1|	-	3.2	7.8	17.6	11	6.2	0.3	3.4	1	1	2	3	3	3	0	YhfH-like	protein
Jiv90	PF14901.6	gi|564289285|ref|YP_008875522.1|	-	4.2	7.6	9.6	5.7	7.2	3.6	2.0	1	1	1	2	2	2	0	Cleavage	inducing	molecular	chaperone
Sgf11	PF08209.11	gi|564289285|ref|YP_008875522.1|	-	4.2	7.0	15.9	0.5	10.0	0.7	3.8	1	1	3	4	4	4	0	Sgf11	(transcriptional	regulation	protein)
Ribosomal_L37ae	PF01780.19	gi|564289285|ref|YP_008875522.1|	-	5.1	7.3	11.1	8.9	6.5	4.5	2.9	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
zf-B_box	PF00643.24	gi|564289285|ref|YP_008875522.1|	-	6	7.1	10.5	1.1e+02	3.1	10.5	2.4	1	1	0	1	1	1	0	B-box	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|564289285|ref|YP_008875522.1|	-	6.4	6.8	19.6	5.4e+02	0.7	19.6	3.3	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
NRDD	PF13597.6	gi|564289285|ref|YP_008875522.1|	-	7.1	5.3	10.9	2.7	6.7	0.9	2.0	1	1	1	2	2	2	0	Anaerobic	ribonucleoside-triphosphate	reductase
TFIIS_C	PF01096.18	gi|564289285|ref|YP_008875522.1|	-	7.3	6.5	17.8	11	5.9	0.3	4.1	2	1	2	4	4	4	0	Transcription	factor	S-II	(TFIIS)
PhnA_Zn_Ribbon	PF08274.12	gi|564289285|ref|YP_008875522.1|	-	8.4	6.4	13.0	1.6	8.8	0.2	3.4	2	1	2	4	4	4	0	PhnA	Zinc-Ribbon
DUF2391	PF09622.10	gi|564289286|ref|YP_008875523.1|	-	0.00011	21.6	3.6	0.00015	21.2	3.6	1.1	1	0	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
3HCDH_N	PF02737.18	gi|564289287|ref|YP_008875524.1|	-	2.9e-20	72.9	1.4	1.6e-19	70.4	1.4	1.9	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|564289287|ref|YP_008875524.1|	-	1.4e-14	54.5	0.0	2.4e-14	53.7	0.0	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564289287|ref|YP_008875524.1|	-	0.0016	18.5	0.2	0.0031	17.5	0.0	1.6	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.17	gi|564289287|ref|YP_008875524.1|	-	0.011	16.3	0.1	0.021	15.4	0.1	1.7	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
AP_endonuc_2	PF01261.24	gi|564289288|ref|YP_008875525.1|	-	5.7e-35	120.7	3.7	8.6e-35	120.1	3.7	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
AP_endonuc_2_N	PF07582.12	gi|564289288|ref|YP_008875525.1|	-	3.7e-20	71.4	0.1	8.1e-20	70.3	0.1	1.6	1	0	0	1	1	1	1	AP	endonuclease	family	2	C	terminus
Mut7-C	PF01927.16	gi|564289288|ref|YP_008875525.1|	-	0.095	12.8	0.0	13	5.9	0.0	3.0	3	0	0	3	3	3	0	Mut7-C	RNAse	domain
DUF3122	PF11320.8	gi|564289288|ref|YP_008875525.1|	-	0.1	12.6	0.0	0.39	10.8	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3122)
TIR-like	PF10137.9	gi|564289288|ref|YP_008875525.1|	-	0.21	11.6	0.0	1.3	9.0	0.0	2.0	2	0	0	2	2	2	0	Predicted	nucleotide-binding	protein	containing	TIR-like	domain
AIM24	PF01987.17	gi|564289289|ref|YP_008875526.1|	-	1.6e-55	188.0	0.0	1.8e-55	187.8	0.0	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
CBS	PF00571.28	gi|564289290|ref|YP_008875527.1|	-	1.7e-19	70.0	0.7	4.2e-10	39.9	0.2	2.2	2	0	0	2	2	2	2	CBS	domain
GFO_IDH_MocA	PF01408.22	gi|564289291|ref|YP_008875528.1|	-	9.2e-14	52.3	0.0	1.6e-13	51.6	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|564289291|ref|YP_008875528.1|	-	1.8e-12	47.3	0.0	3.3e-12	46.4	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
ox_reductase_C	PF08635.10	gi|564289291|ref|YP_008875528.1|	-	0.029	14.0	0.0	0.061	13.0	0.0	1.5	1	1	0	1	1	1	0	Putative	oxidoreductase	C	terminal	domain
MMR_HSR1_C	PF08438.10	gi|564289292|ref|YP_008875529.1|	-	3.1e-30	105.0	0.0	5e-30	104.4	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|564289292|ref|YP_008875529.1|	-	1.7e-20	73.2	0.0	1.8e-19	69.9	0.0	2.5	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|564289292|ref|YP_008875529.1|	-	5.3e-11	42.4	0.0	1.1e-10	41.4	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|564289292|ref|YP_008875529.1|	-	1e-09	38.1	0.0	7.8e-08	32.0	0.0	3.0	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
Histidinol_dh	PF00815.20	gi|564289294|ref|YP_008875531.1|	-	2.3e-152	507.8	8.1	2.7e-152	507.5	8.1	1.0	1	0	0	1	1	1	1	Histidinol	dehydrogenase
Fe-S_biosyn	PF01521.20	gi|564289295|ref|YP_008875532.1|	-	3.3e-17	62.7	0.0	3.9e-17	62.4	0.0	1.0	1	0	0	1	1	1	1	Iron-sulphur	cluster	biosynthesis
Dodecin	PF07311.12	gi|564289296|ref|YP_008875533.1|	-	1.4e-21	76.5	0.6	1.6e-21	76.3	0.6	1.0	1	0	0	1	1	1	1	Dodecin
DUF2238	PF09997.9	gi|564289297|ref|YP_008875534.1|	-	2.2e-05	24.3	1.2	3.4e-05	23.7	1.2	1.4	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
YdjM	PF04307.14	gi|564289299|ref|YP_008875536.1|	-	1.6e-19	69.9	27.0	1.1e-17	63.9	27.0	2.8	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
TraX	PF05857.11	gi|564289299|ref|YP_008875536.1|	-	0.34	10.9	4.3	0.63	10.1	2.4	2.3	1	1	2	3	3	3	0	TraX	protein
MS_channel	PF00924.18	gi|564289300|ref|YP_008875537.1|	-	1.1e-12	47.9	2.7	1.1e-12	47.9	2.7	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|564289300|ref|YP_008875537.1|	-	0.0083	16.1	2.0	0.0083	16.1	2.0	2.1	3	0	0	3	3	3	1	Conserved	TM	helix
Zn-ribbon_8	PF09723.10	gi|564289302|ref|YP_008875539.1|	-	0.058	13.5	0.3	0.092	12.9	0.3	1.2	1	0	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_6	PF14599.6	gi|564289302|ref|YP_008875539.1|	-	1.4	8.9	8.1	1	9.4	0.5	2.6	1	1	1	2	2	2	0	Zinc-ribbon
5_nucleotid_C	PF02872.18	gi|564289303|ref|YP_008875540.1|	-	5.9e-28	98.1	0.0	9.9e-28	97.3	0.0	1.4	1	0	0	1	1	1	1	5'-nucleotidase,	C-terminal	domain
Metallophos	PF00149.28	gi|564289303|ref|YP_008875540.1|	-	1.1e-07	32.6	0.0	2.4e-07	31.5	0.0	1.6	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|564289303|ref|YP_008875540.1|	-	0.0022	18.2	0.3	0.011	16.0	0.3	2.0	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
AroM	PF07302.11	gi|564289303|ref|YP_008875540.1|	-	0.074	12.4	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	AroM	protein
Usp	PF00582.26	gi|564289304|ref|YP_008875541.1|	-	8.4e-09	36.1	2.2	1.6e-06	28.7	2.1	2.2	1	1	0	1	1	1	1	Universal	stress	protein	family
ORC4_C	PF14629.6	gi|564289304|ref|YP_008875541.1|	-	0.1	11.9	0.0	0.15	11.4	0.0	1.2	1	0	0	1	1	1	0	Origin	recognition	complex	(ORC)	subunit	4	C-terminus
DnaI_N	PF07319.11	gi|564289304|ref|YP_008875541.1|	-	0.12	13.1	0.0	0.28	11.9	0.0	1.6	2	0	0	2	2	2	0	Primosomal	protein	DnaI	N-terminus
MS_channel	PF00924.18	gi|564289305|ref|YP_008875542.1|	-	5.2e-35	120.9	0.1	7.4e-35	120.4	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
EI24	PF07264.11	gi|564289305|ref|YP_008875542.1|	-	0.064	13.5	2.2	0.094	13.0	2.2	1.2	1	0	0	1	1	1	0	Etoposide-induced	protein	2.4	(EI24)
Chromate_transp	PF02417.15	gi|564289305|ref|YP_008875542.1|	-	0.094	12.8	4.8	0.15	12.2	4.8	1.2	1	0	0	1	1	1	0	Chromate	transporter
PAC2	PF09754.9	gi|564289306|ref|YP_008875543.1|	-	7.5e-24	84.9	0.0	8.6e-24	84.7	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
zf-ribbon_3	PF13248.6	gi|564289307|ref|YP_008875544.1|	-	9.9e-05	21.6	0.6	0.02	14.3	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|564289307|ref|YP_008875544.1|	-	0.00025	20.6	1.4	0.049	13.3	0.2	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564289307|ref|YP_008875544.1|	-	0.00041	20.0	1.5	0.0073	16.0	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564289307|ref|YP_008875544.1|	-	0.00042	19.8	0.8	0.00089	18.7	0.8	1.6	1	1	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|564289307|ref|YP_008875544.1|	-	0.0022	18.0	1.7	0.0035	17.3	1.7	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|564289307|ref|YP_008875544.1|	-	0.0031	17.4	2.9	0.0062	16.4	2.9	1.5	1	1	0	1	1	1	1	Nudix	N-terminal
Elf1	PF05129.13	gi|564289307|ref|YP_008875544.1|	-	0.0038	17.2	0.1	0.0043	17.1	0.1	1.2	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Anti-TRAP	PF15777.5	gi|564289307|ref|YP_008875544.1|	-	0.0047	16.9	1.7	0.99	9.4	0.1	2.1	1	1	1	2	2	2	2	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Terminase_GpA	PF05876.12	gi|564289307|ref|YP_008875544.1|	-	0.0054	15.4	0.4	0.0054	15.4	0.4	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
PhnA_Zn_Ribbon	PF08274.12	gi|564289307|ref|YP_008875544.1|	-	0.0054	16.6	0.6	0.12	12.4	0.0	2.2	2	0	0	2	2	2	1	PhnA	Zinc-Ribbon
OrfB_Zn_ribbon	PF07282.11	gi|564289307|ref|YP_008875544.1|	-	0.0088	15.9	1.1	0.015	15.2	1.1	1.4	1	1	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zinc_ribbon_4	PF13717.6	gi|564289307|ref|YP_008875544.1|	-	0.0089	15.9	0.3	4.6	7.2	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DUF1272	PF06906.11	gi|564289307|ref|YP_008875544.1|	-	0.011	15.7	0.2	3.6	7.8	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
DUF35_N	PF12172.8	gi|564289307|ref|YP_008875544.1|	-	0.014	15.3	2.3	1.3	9.0	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF4379	PF14311.6	gi|564289307|ref|YP_008875544.1|	-	0.021	15.2	0.5	0.026	14.9	0.5	1.2	1	0	0	1	1	1	0	Probable	Zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|564289307|ref|YP_008875544.1|	-	0.033	14.4	2.1	0.14	12.3	0.3	2.0	1	1	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|564289307|ref|YP_008875544.1|	-	0.034	14.2	0.7	0.059	13.4	0.7	1.3	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_10	PF10058.9	gi|564289307|ref|YP_008875544.1|	-	0.035	13.8	0.3	0.06	13.1	0.3	1.4	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
DUF1610	PF07754.11	gi|564289307|ref|YP_008875544.1|	-	0.049	13.6	2.0	0.43	10.6	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
UPF0547	PF10571.9	gi|564289307|ref|YP_008875544.1|	-	0.05	13.7	5.3	0.68	10.1	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-RING_7	PF02591.15	gi|564289307|ref|YP_008875544.1|	-	0.052	13.7	0.6	2.2	8.6	0.1	2.3	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
zinc_ribbon_5	PF13719.6	gi|564289307|ref|YP_008875544.1|	-	0.06	13.1	1.6	0.42	10.4	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564289307|ref|YP_008875544.1|	-	0.063	13.4	3.7	0.18	11.9	3.1	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_15	PF17032.5	gi|564289307|ref|YP_008875544.1|	-	0.073	13.8	1.4	0.14	12.9	1.4	1.6	1	1	0	1	1	1	0	zinc-ribbon	family
zinc-ribbons_6	PF07191.12	gi|564289307|ref|YP_008875544.1|	-	0.076	13.0	1.9	0.28	11.2	1.9	1.8	1	1	0	1	1	1	0	zinc-ribbons
zinc_ribbon_9	PF14369.6	gi|564289307|ref|YP_008875544.1|	-	0.077	13.3	2.5	3.9	7.8	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon
Cys_rich_CPXG	PF14255.6	gi|564289307|ref|YP_008875544.1|	-	0.081	12.8	2.0	0.22	11.5	2.1	1.7	1	1	1	2	2	2	0	Cysteine-rich	CPXCG
zf-LITAF-like	PF10601.9	gi|564289307|ref|YP_008875544.1|	-	0.086	13.1	1.8	5.4	7.4	0.1	2.2	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
Auto_anti-p27	PF06677.12	gi|564289307|ref|YP_008875544.1|	-	0.092	12.9	1.0	6.8	6.9	0.1	2.1	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Rubredoxin_2	PF18073.1	gi|564289307|ref|YP_008875544.1|	-	0.11	12.3	2.0	5.3	6.9	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TFIIS_C	PF01096.18	gi|564289307|ref|YP_008875544.1|	-	0.18	11.7	2.5	1.4	8.8	0.1	2.7	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
zf-IS66	PF13005.7	gi|564289307|ref|YP_008875544.1|	-	0.22	12.0	3.4	9.9	6.7	3.6	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_ligase_ZBD	PF03119.16	gi|564289307|ref|YP_008875544.1|	-	0.22	11.6	3.4	7.6	6.7	0.2	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf_UBZ	PF18439.1	gi|564289307|ref|YP_008875544.1|	-	0.28	10.8	4.5	4.3	7.0	0.7	2.6	2	1	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS1595	PF12760.7	gi|564289307|ref|YP_008875544.1|	-	0.54	10.3	3.9	5.2	7.1	4.1	2.0	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
PEMT	PF04191.13	gi|564289308|ref|YP_008875545.1|	-	0.087	13.2	2.5	0.11	12.9	2.5	1.1	1	0	0	1	1	1	0	Phospholipid	methyltransferase
IF-2B	PF01008.17	gi|564289309|ref|YP_008875546.1|	-	7.6e-49	166.4	0.3	9.6e-49	166.1	0.3	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
PMC2NT	PF08066.12	gi|564289309|ref|YP_008875546.1|	-	0.02	15.6	2.3	0.02	15.6	2.3	2.1	1	1	1	2	2	2	0	PMC2NT	(NUC016)	domain
Phi_1	PF04674.12	gi|564289309|ref|YP_008875546.1|	-	0.18	11.1	0.0	1.9	7.7	0.1	2.0	1	1	0	2	2	2	0	Phosphate-induced	protein	1	conserved	region
Pilin_N	PF07790.11	gi|564289310|ref|YP_008875547.1|	-	2.7e-06	28.2	0.2	1.8e-05	25.6	0.1	1.9	1	1	1	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
DoxX	PF07681.12	gi|564289311|ref|YP_008875548.1|	-	9.8e-08	32.5	6.7	9.8e-08	32.5	6.7	4.4	3	2	1	4	4	4	1	DoxX
DoxD	PF04173.13	gi|564289311|ref|YP_008875548.1|	-	0.056	13.4	10.3	0.15	11.9	0.4	3.7	3	1	1	4	4	4	0	TQO	small	subunit	DoxD
Acetyltransf_10	PF13673.7	gi|564289312|ref|YP_008875549.1|	-	5.6e-14	52.2	0.1	7.2e-14	51.8	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564289312|ref|YP_008875549.1|	-	6.2e-13	49.0	0.6	8.4e-13	48.6	0.6	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564289312|ref|YP_008875549.1|	-	9.9e-13	48.3	0.6	1.7e-12	47.6	0.6	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289312|ref|YP_008875549.1|	-	3.7e-10	39.6	0.1	1e-09	38.2	0.0	1.8	2	0	0	2	2	2	1	FR47-like	protein
Acetyltransf_6	PF13480.7	gi|564289312|ref|YP_008875549.1|	-	9.3e-05	22.6	0.6	0.00016	21.8	0.6	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564289312|ref|YP_008875549.1|	-	0.00062	19.9	0.1	0.0028	17.8	0.1	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564289312|ref|YP_008875549.1|	-	0.02	15.0	0.1	0.071	13.2	0.0	1.9	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564289312|ref|YP_008875549.1|	-	0.022	14.9	0.0	0.036	14.2	0.0	1.4	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.6	gi|564289312|ref|YP_008875549.1|	-	0.07	12.8	0.2	0.16	11.6	0.2	1.9	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PanZ	PF12568.8	gi|564289312|ref|YP_008875549.1|	-	0.095	12.4	0.2	0.13	12.0	0.2	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
DNA_primase_S	PF01896.19	gi|564289313|ref|YP_008875550.1|	-	2.3e-24	86.4	0.0	5.9e-24	85.1	0.0	1.6	1	1	0	1	1	1	1	DNA	primase	small	subunit
DUF1525	PF07511.11	gi|564289314|ref|YP_008875551.1|	-	0.0069	16.5	0.3	0.013	15.6	0.3	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1525)
Metal_resist	PF13801.6	gi|564289314|ref|YP_008875551.1|	-	0.01	16.0	5.3	0.01	16.0	5.3	2.3	1	1	1	2	2	2	0	Heavy-metal	resistance
Sld5	PF05916.11	gi|564289314|ref|YP_008875551.1|	-	0.037	14.5	0.3	0.064	13.7	0.3	1.3	1	0	0	1	1	1	0	GINS	complex	protein
DUF2390	PF09523.10	gi|564289314|ref|YP_008875551.1|	-	0.081	13.3	3.3	0.14	12.4	3.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2390)
Yip1	PF04893.17	gi|564289315|ref|YP_008875552.1|	-	0.061	13.0	12.3	0.08	12.7	12.3	1.1	1	0	0	1	1	1	0	Yip1	domain
E1-E2_ATPase	PF00122.20	gi|564289315|ref|YP_008875552.1|	-	0.07	12.7	0.3	0.07	12.7	0.3	2.0	2	0	0	2	2	2	0	E1-E2	ATPase
HEAT	PF02985.22	gi|564289315|ref|YP_008875552.1|	-	0.69	10.3	2.7	13	6.4	0.3	2.5	2	0	0	2	2	2	0	HEAT	repeat
FtsL	PF04999.13	gi|564289315|ref|YP_008875552.1|	-	3.6	7.7	5.9	14	5.7	2.6	2.2	2	0	0	2	2	2	0	Cell	division	protein	FtsL
DUF2975	PF11188.8	gi|564289315|ref|YP_008875552.1|	-	4.9	7.0	12.0	0.45	10.4	3.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2975)
Trypsin_2	PF13365.6	gi|564289316|ref|YP_008875553.1|	-	8.4e-30	104.7	5.8	1.9e-29	103.5	5.8	1.6	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.26	gi|564289316|ref|YP_008875553.1|	-	8e-12	45.4	0.2	5e-11	42.8	0.2	2.0	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.6	gi|564289316|ref|YP_008875553.1|	-	4.4e-11	43.0	0.1	1.1e-10	41.6	0.1	1.8	1	0	0	1	1	1	1	PDZ	domain
Pico_P2A	PF00947.19	gi|564289316|ref|YP_008875553.1|	-	0.0043	17.1	0.5	0.012	15.7	0.1	1.8	2	0	0	2	2	2	1	Picornavirus	core	protein	2A
E1-E2_ATPase	PF00122.20	gi|564289318|ref|YP_008875555.1|	-	2.1e-55	187.0	2.9	5.3e-55	185.8	2.9	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564289318|ref|YP_008875555.1|	-	5.8e-44	150.9	3.6	1.1e-43	150.0	3.6	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564289318|ref|YP_008875555.1|	-	2.8e-30	104.5	9.0	2.4e-14	53.5	0.0	4.8	5	0	0	5	5	5	2	Heavy-metal-associated	domain
HAD	PF12710.7	gi|564289318|ref|YP_008875555.1|	-	0.0017	18.8	0.1	0.0049	17.3	0.1	1.8	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|564289318|ref|YP_008875555.1|	-	0.0063	16.3	0.9	0.013	15.3	0.9	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Glyco_tran_WecB	PF03808.13	gi|564289318|ref|YP_008875555.1|	-	0.12	12.3	0.0	0.33	10.9	0.0	1.8	1	0	0	1	1	1	0	Glycosyl	transferase	WecB/TagA/CpsF	family
Lactamase_B_3	PF13483.6	gi|564289319|ref|YP_008875556.1|	-	1.7e-21	76.8	0.1	2.6e-21	76.2	0.1	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|564289319|ref|YP_008875556.1|	-	1.5e-15	57.3	1.0	1.9e-15	56.9	1.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|564289319|ref|YP_008875556.1|	-	4.1e-07	30.2	7.6	9.8e-07	29.0	7.6	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
PAS_4	PF08448.10	gi|564289320|ref|YP_008875557.1|	-	1.7e-09	37.9	0.3	1e-08	35.4	0.0	2.3	3	0	0	3	3	3	1	PAS	fold
HATPase_c	PF02518.26	gi|564289320|ref|YP_008875557.1|	-	1.4e-08	35.2	0.0	2.5e-08	34.4	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564289320|ref|YP_008875557.1|	-	5e-05	23.3	0.3	0.00012	22.0	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
Cob_adeno_trans	PF01923.18	gi|564289320|ref|YP_008875557.1|	-	0.074	13.2	0.2	0.15	12.2	0.2	1.4	1	0	0	1	1	1	0	Cobalamin	adenosyltransferase
HisKA	PF00512.25	gi|564289320|ref|YP_008875557.1|	-	0.13	12.3	1.7	0.23	11.5	0.3	2.3	2	1	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Response_reg	PF00072.24	gi|564289320|ref|YP_008875557.1|	-	0.15	12.3	0.0	0.29	11.3	0.0	1.5	1	0	0	1	1	1	0	Response	regulator	receiver	domain
DNA_RNApol_7kD	PF03604.13	gi|564289321|ref|YP_008875558.1|	-	0.0068	16.1	1.4	0.011	15.4	1.4	1.4	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf_UBZ	PF18439.1	gi|564289321|ref|YP_008875558.1|	-	0.025	14.2	3.4	0.38	10.4	0.1	2.3	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|564289321|ref|YP_008875558.1|	-	0.066	13.3	1.3	0.15	12.2	1.3	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF1451	PF07295.11	gi|564289321|ref|YP_008875558.1|	-	0.089	12.8	2.9	0.33	11.0	0.9	1.9	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
DUF1841	PF08897.11	gi|564289321|ref|YP_008875558.1|	-	0.16	12.0	0.0	0.16	12.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1841)
ILVD_EDD	PF00920.21	gi|564289322|ref|YP_008875559.1|	-	9.6e-198	658.0	1.3	1.1e-197	657.8	1.3	1.0	1	0	0	1	1	1	1	Dehydratase	family
DGC	PF08859.11	gi|564289322|ref|YP_008875559.1|	-	0.051	13.7	0.3	0.94	9.6	0.0	2.5	2	0	0	2	2	2	0	DGC	domain
GHMP_kinases_N	PF00288.26	gi|564289323|ref|YP_008875560.1|	-	2.6e-06	27.6	0.5	1.2e-05	25.4	0.2	2.1	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|564289323|ref|YP_008875560.1|	-	0.0074	16.6	0.0	0.028	14.8	0.0	1.9	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
Oxidored_FMN	PF00724.20	gi|564289324|ref|YP_008875561.1|	-	1.1e-66	225.5	0.0	1.3e-66	225.2	0.0	1.0	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Dus	PF01207.17	gi|564289324|ref|YP_008875561.1|	-	0.00028	20.1	0.0	0.00042	19.5	0.0	1.2	1	0	0	1	1	1	1	Dihydrouridine	synthase	(Dus)
DUF368	PF04018.13	gi|564289325|ref|YP_008875562.1|	-	2.2e-57	194.5	22.0	2.8e-57	194.1	22.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF368)
GARS_A	PF01071.19	gi|564289327|ref|YP_008875564.1|	-	4e-11	43.0	0.0	8.1e-11	42.1	0.0	1.5	1	1	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_C	PF02843.16	gi|564289327|ref|YP_008875564.1|	-	4.1e-08	33.4	0.1	8.7e-08	32.3	0.1	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_5	PF13549.6	gi|564289327|ref|YP_008875564.1|	-	0.19	11.2	0.0	0.47	9.9	0.0	1.7	1	1	0	1	1	1	0	ATP-grasp	domain
XhlA	PF10779.9	gi|564289328|ref|YP_008875565.1|	-	0.0093	16.1	1.1	0.26	11.5	0.1	2.1	2	0	0	2	2	2	1	Haemolysin	XhlA
YfdX	PF10938.8	gi|564289328|ref|YP_008875565.1|	-	0.01	15.7	1.7	0.38	10.7	0.0	2.2	2	0	0	2	2	2	0	YfdX	protein
DUF4363	PF14276.6	gi|564289328|ref|YP_008875565.1|	-	0.018	15.2	2.5	0.52	10.5	0.7	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4363)
NPV_P10	PF05531.12	gi|564289328|ref|YP_008875565.1|	-	0.053	14.0	0.5	0.3	11.6	0.1	1.9	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
TBCC_N	PF16752.5	gi|564289328|ref|YP_008875565.1|	-	0.058	13.8	3.1	5.3	7.5	0.1	2.0	2	0	0	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
Metal_resist	PF13801.6	gi|564289328|ref|YP_008875565.1|	-	0.069	13.4	3.0	0.086	13.0	0.1	2.0	1	1	1	2	2	2	0	Heavy-metal	resistance
EntA_Immun	PF08951.10	gi|564289328|ref|YP_008875565.1|	-	0.073	13.4	0.7	9	6.7	0.0	2.1	2	0	0	2	2	2	0	Enterocin	A	Immunity
V-SNARE	PF05008.15	gi|564289328|ref|YP_008875565.1|	-	0.93	9.9	4.9	13	6.3	0.2	2.2	1	1	0	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
HTH_24	PF13412.6	gi|564289329|ref|YP_008875567.1|	-	6.4e-13	48.0	0.6	6.7e-09	35.2	0.1	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564289329|ref|YP_008875567.1|	-	7.7e-10	38.4	1.3	1.3e-06	28.2	0.1	2.5	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564289329|ref|YP_008875567.1|	-	4.5e-06	26.4	0.2	4.2e-05	23.4	0.0	2.4	2	0	0	2	2	2	1	MarR	family
HTH_Tnp_Tc3_2	PF01498.18	gi|564289329|ref|YP_008875567.1|	-	1.7e-05	25.0	0.1	0.33	11.2	0.0	2.6	3	0	0	3	3	2	2	Transposase
MarR	PF01047.22	gi|564289329|ref|YP_008875567.1|	-	6.4e-05	22.8	0.1	0.00043	20.1	0.1	2.2	2	0	0	2	2	2	1	MarR	family
HTH_50	PF18024.1	gi|564289329|ref|YP_008875567.1|	-	0.00021	20.8	0.0	0.00045	19.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|564289329|ref|YP_008875567.1|	-	0.00032	20.7	0.0	0.00076	19.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_WhiA	PF02650.14	gi|564289329|ref|YP_008875567.1|	-	0.00062	20.1	0.0	0.18	12.1	0.0	2.4	2	0	0	2	2	2	1	WhiA	C-terminal	HTH	domain
HTH_38	PF13936.6	gi|564289329|ref|YP_008875567.1|	-	0.00068	19.4	0.1	0.0014	18.3	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|564289329|ref|YP_008875567.1|	-	0.00086	19.2	0.2	0.0083	16.1	0.0	2.4	3	0	0	3	3	3	1	HTH	domain
HTH_31	PF13560.6	gi|564289329|ref|YP_008875567.1|	-	0.0011	19.3	0.0	0.0029	17.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
LacI	PF00356.21	gi|564289329|ref|YP_008875567.1|	-	0.0012	18.6	0.8	0.12	12.2	0.0	3.0	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	lacI	family
YdaS_antitoxin	PF15943.5	gi|564289329|ref|YP_008875567.1|	-	0.0025	17.6	0.0	0.0056	16.5	0.0	1.6	1	0	0	1	1	1	1	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_IclR	PF09339.10	gi|564289329|ref|YP_008875567.1|	-	0.0066	16.2	0.5	0.47	10.3	0.0	2.6	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
Phage_CI_repr	PF07022.13	gi|564289329|ref|YP_008875567.1|	-	0.0073	16.4	0.0	0.013	15.6	0.0	1.4	1	0	0	1	1	1	1	Bacteriophage	CI	repressor	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|564289329|ref|YP_008875567.1|	-	0.012	15.9	0.1	0.042	14.0	0.0	1.9	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|564289329|ref|YP_008875567.1|	-	0.012	15.1	0.0	0.04	13.4	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_23	PF13384.6	gi|564289329|ref|YP_008875567.1|	-	0.019	14.7	0.0	0.049	13.4	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_10	PF04967.12	gi|564289329|ref|YP_008875567.1|	-	0.048	13.5	0.0	0.16	11.8	0.0	1.9	1	0	0	1	1	1	0	HTH	DNA	binding	domain
TolA_bind_tri	PF16331.5	gi|564289329|ref|YP_008875567.1|	-	0.052	13.6	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	TolA	binding	protein	trimerisation
DUF948	PF06103.11	gi|564289329|ref|YP_008875567.1|	-	0.068	13.4	0.2	0.22	11.8	0.1	1.9	2	0	0	2	2	1	0	Bacterial	protein	of	unknown	function	(DUF948)
HTH_37	PF13744.6	gi|564289329|ref|YP_008875567.1|	-	0.092	12.7	0.0	0.22	11.5	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564289329|ref|YP_008875567.1|	-	0.12	12.4	0.5	0.42	10.6	0.1	2.2	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
CENP-B_N	PF04218.13	gi|564289329|ref|YP_008875567.1|	-	0.12	12.0	0.1	0.23	11.1	0.1	1.4	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|564289329|ref|YP_008875567.1|	-	0.13	11.6	0.0	0.49	9.9	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_28	PF13518.6	gi|564289329|ref|YP_008875567.1|	-	0.14	12.3	0.0	0.36	11.0	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
FlaC_arch	PF05377.11	gi|564289329|ref|YP_008875567.1|	-	0.43	11.0	1.8	0.45	10.9	0.2	1.9	2	0	0	2	2	1	0	Flagella	accessory	protein	C	(FlaC)
HTH_32	PF13565.6	gi|564289329|ref|YP_008875567.1|	-	0.61	10.7	3.3	2.3	8.9	0.2	2.9	2	2	1	3	3	3	0	Homeodomain-like	domain
DUF1840	PF08895.11	gi|564289329|ref|YP_008875567.1|	-	3.6	8.0	6.4	0.82	10.0	1.6	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1840)
TFIIS_C	PF01096.18	gi|564289330|ref|YP_008875568.1|	-	1.4e-17	63.2	3.5	1.4e-17	63.2	3.5	3.0	3	0	0	3	3	3	1	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.16	gi|564289330|ref|YP_008875568.1|	-	1.3e-06	28.1	9.0	1.4e-06	28.1	1.4	3.1	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
DNA_RNApol_7kD	PF03604.13	gi|564289330|ref|YP_008875568.1|	-	2.4e-05	23.9	10.6	0.24	11.1	0.2	3.4	3	1	0	3	3	3	3	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|564289330|ref|YP_008875568.1|	-	5.2e-05	22.5	12.7	0.0017	17.7	0.8	3.3	3	0	0	3	3	3	2	zinc-ribbon	domain
DZR	PF12773.7	gi|564289330|ref|YP_008875568.1|	-	7.2e-05	22.7	11.7	0.00034	20.6	1.0	3.0	2	1	0	2	2	2	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564289330|ref|YP_008875568.1|	-	0.00054	19.6	9.5	2.4	8.0	0.2	4.2	4	0	0	4	4	4	1	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289330|ref|YP_008875568.1|	-	0.002	18.0	13.0	0.068	13.1	1.8	2.8	2	1	1	3	3	3	2	Putative	transposase	DNA-binding	domain
zf_UBZ	PF18439.1	gi|564289330|ref|YP_008875568.1|	-	0.0023	17.5	13.4	1.7	8.3	0.1	4.2	3	1	1	4	4	4	1	Ubiquitin-Binding	Zinc	Finger
Prok-RING_1	PF14446.6	gi|564289330|ref|YP_008875568.1|	-	0.0034	17.3	9.3	0.039	13.9	2.7	3.0	3	0	0	3	3	3	1	Prokaryotic	RING	finger	family	1
TackOD1	PF18551.1	gi|564289330|ref|YP_008875568.1|	-	0.0043	16.8	5.5	0.54	9.9	0.2	2.2	1	1	1	2	2	2	2	Thaumarchaeal	output	domain	1
Zn_Tnp_IS1595	PF12760.7	gi|564289330|ref|YP_008875568.1|	-	0.0059	16.6	1.2	0.0059	16.6	1.2	2.8	2	1	1	3	3	3	1	Transposase	zinc-ribbon	domain
DUF2318	PF10080.9	gi|564289330|ref|YP_008875568.1|	-	0.0061	16.7	8.8	0.047	13.8	1.6	3.0	2	1	1	3	3	3	1	Predicted	membrane	protein	(DUF2318)
Zn-ribbon_8	PF09723.10	gi|564289330|ref|YP_008875568.1|	-	0.0099	16.0	17.5	0.23	11.6	2.3	3.6	2	2	0	3	3	3	2	Zinc	ribbon	domain
HypA	PF01155.19	gi|564289330|ref|YP_008875568.1|	-	0.011	15.8	8.8	25	4.9	8.8	2.6	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ACC	PF17848.1	gi|564289330|ref|YP_008875568.1|	-	0.052	13.6	12.8	5.9	7.1	0.1	4.1	4	0	0	4	4	4	0	Acetyl-coA	carboxylase	zinc	finger	domain
zinc-ribbons_6	PF07191.12	gi|564289330|ref|YP_008875568.1|	-	0.073	13.1	10.7	0.13	12.3	1.3	2.4	2	1	0	2	2	2	0	zinc-ribbons
Nudix_N_2	PF14803.6	gi|564289330|ref|YP_008875568.1|	-	0.15	12.0	12.9	27	4.8	0.5	4.2	3	1	1	4	4	4	0	Nudix	N-terminal
zinc_ribbon_4	PF13717.6	gi|564289330|ref|YP_008875568.1|	-	0.18	11.8	11.1	1.5	8.8	0.6	3.6	3	1	1	4	4	4	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564289330|ref|YP_008875568.1|	-	0.18	11.4	16.1	5.5	6.6	3.1	4.4	3	2	0	3	3	3	0	TFIIB	zinc-binding
IBR	PF01485.21	gi|564289330|ref|YP_008875568.1|	-	0.22	11.8	10.5	3.8	7.8	1.8	3.1	1	1	2	3	3	3	0	IBR	domain,	a	half	RING-finger	domain
zf-C4_Topoisom	PF01396.19	gi|564289330|ref|YP_008875568.1|	-	0.24	11.2	7.2	15	5.4	0.1	4.0	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
Rpr2	PF04032.16	gi|564289330|ref|YP_008875568.1|	-	0.31	11.3	2.6	3.2	8.1	1.1	2.9	2	1	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
GFA	PF04828.14	gi|564289330|ref|YP_008875568.1|	-	0.41	11.0	11.6	3.1	8.2	0.1	3.9	1	1	3	4	4	4	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn_ribbon_recom	PF13408.6	gi|564289330|ref|YP_008875568.1|	-	0.61	10.6	11.9	25	5.5	0.5	4.0	3	1	1	4	4	4	0	Recombinase	zinc	beta	ribbon	domain
Rubredoxin_2	PF18073.1	gi|564289330|ref|YP_008875568.1|	-	0.76	9.6	19.4	3	7.6	1.1	4.3	4	1	0	4	4	4	0	Rubredoxin	metal	binding	domain
A2L_zn_ribbon	PF08792.10	gi|564289330|ref|YP_008875568.1|	-	0.9	9.3	16.7	6.7	6.5	4.1	4.1	3	1	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-RING_7	PF02591.15	gi|564289330|ref|YP_008875568.1|	-	1.3	9.3	12.9	8.4	6.7	0.3	4.2	3	1	1	4	4	4	0	C4-type	zinc	ribbon	domain
zinc-ribbon_6	PF10005.9	gi|564289330|ref|YP_008875568.1|	-	2.2	9.0	8.5	2.5	8.8	0.3	2.9	2	1	1	3	3	3	0	zinc-ribbon	domain
PHD_2	PF13831.6	gi|564289330|ref|YP_008875568.1|	-	2.4	7.8	10.4	39	3.9	0.2	4.0	3	1	1	4	4	4	0	PHD-finger
PhnA_Zn_Ribbon	PF08274.12	gi|564289330|ref|YP_008875568.1|	-	2.7	8.0	15.0	21	5.1	0.1	4.0	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
PHD	PF00628.29	gi|564289330|ref|YP_008875568.1|	-	3.2	7.7	15.1	7.1	6.6	2.2	3.1	2	2	0	2	2	2	0	PHD-finger
YhfH	PF14149.6	gi|564289330|ref|YP_008875568.1|	-	4.1	7.5	15.7	16	5.5	0.1	4.3	3	1	1	4	4	4	0	YhfH-like	protein
UPF0547	PF10571.9	gi|564289330|ref|YP_008875568.1|	-	4.2	7.5	17.4	0.83	9.8	1.0	3.9	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
GATA	PF00320.27	gi|564289330|ref|YP_008875568.1|	-	4.3	7.0	11.4	4.3	7.0	0.5	3.7	3	1	0	3	3	3	0	GATA	zinc	finger
zinc_ribbon_15	PF17032.5	gi|564289330|ref|YP_008875568.1|	-	6.8	7.5	11.8	23	5.8	2.3	3.1	1	1	1	2	2	2	0	zinc-ribbon	family
DUF2197	PF09963.9	gi|564289330|ref|YP_008875568.1|	-	8.2	6.8	9.5	14	6.1	0.1	3.1	4	0	0	4	4	4	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
Filament	PF00038.21	gi|564289332|ref|YP_008875570.1|	-	1.3e-05	24.9	4.3	2.1e-05	24.3	4.3	1.2	1	0	0	1	1	1	1	Intermediate	filament	protein
HSBP1	PF06825.12	gi|564289332|ref|YP_008875570.1|	-	0.00026	20.8	5.3	1.1	9.2	0.0	3.6	3	0	0	3	3	3	1	Heat	shock	factor	binding	protein	1
CHASE3	PF05227.13	gi|564289332|ref|YP_008875570.1|	-	0.00028	20.8	3.6	0.00028	20.8	3.6	3.1	2	1	2	4	4	4	1	CHASE3	domain
Baculo_PEP_C	PF04513.12	gi|564289332|ref|YP_008875570.1|	-	0.0021	18.1	3.2	0.41	10.7	0.3	2.6	1	1	0	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
LUC7	PF03194.15	gi|564289332|ref|YP_008875570.1|	-	0.0022	17.7	3.7	0.0035	17.0	3.7	1.4	1	0	0	1	1	1	1	LUC7	N_terminus
DUF948	PF06103.11	gi|564289332|ref|YP_008875570.1|	-	0.0033	17.7	4.6	0.011	16.0	0.3	2.8	2	1	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
ABC_tran_CTD	PF16326.5	gi|564289332|ref|YP_008875570.1|	-	0.0071	16.6	1.6	0.0071	16.6	1.6	2.7	3	0	0	3	3	2	1	ABC	transporter	C-terminal	domain
RHH_1	PF01402.21	gi|564289332|ref|YP_008875570.1|	-	0.0091	15.9	1.6	0.16	12.0	0.0	3.4	3	0	0	3	3	3	1	Ribbon-helix-helix	protein,	copG	family
DUF148	PF02520.17	gi|564289332|ref|YP_008875570.1|	-	0.0095	16.0	1.7	0.16	12.1	0.3	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF148
Apolipoprotein	PF01442.18	gi|564289332|ref|YP_008875570.1|	-	0.011	15.6	14.5	0.061	13.2	14.5	2.2	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
NPV_P10	PF05531.12	gi|564289332|ref|YP_008875570.1|	-	0.012	16.0	5.5	0.047	14.2	0.5	2.9	2	1	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
CENP-F_leu_zip	PF10473.9	gi|564289332|ref|YP_008875570.1|	-	0.018	15.1	3.9	0.04	14.0	3.6	1.7	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Zn-ribbon_8	PF09723.10	gi|564289332|ref|YP_008875570.1|	-	0.021	14.9	1.7	0.052	13.7	1.7	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF2884	PF11101.8	gi|564289332|ref|YP_008875570.1|	-	0.031	13.8	2.9	0.042	13.4	0.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2884)
P4Ha_N	PF08336.11	gi|564289332|ref|YP_008875570.1|	-	0.041	13.9	1.1	9.9	6.2	0.0	2.5	1	1	1	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
zf-ribbon_3	PF13248.6	gi|564289332|ref|YP_008875570.1|	-	0.054	12.9	2.6	1.6	8.3	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF713	PF05218.14	gi|564289332|ref|YP_008875570.1|	-	0.067	12.9	0.2	0.13	12.0	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF713)
AdoMetDC_leader	PF08132.11	gi|564289332|ref|YP_008875570.1|	-	0.11	12.4	0.8	0.55	10.2	0.0	2.4	3	0	0	3	3	2	0	S-adenosyl-l-methionine	decarboxylase	leader	peptide
Uso1_p115_C	PF04871.13	gi|564289332|ref|YP_008875570.1|	-	0.13	12.7	6.2	0.21	11.9	5.6	1.8	1	1	0	1	1	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Med2	PF11214.8	gi|564289332|ref|YP_008875570.1|	-	0.13	12.4	2.7	0.31	11.2	0.3	2.2	1	1	0	2	2	2	0	Mediator	complex	subunit	2
YabA	PF06156.13	gi|564289332|ref|YP_008875570.1|	-	0.14	12.8	1.0	0.87	10.3	0.2	2.4	1	1	1	2	2	2	0	Initiation	control	protein	YabA
FlxA	PF14282.6	gi|564289332|ref|YP_008875570.1|	-	0.15	12.1	1.0	1.8	8.6	0.1	2.4	1	1	1	2	2	2	0	FlxA-like	protein
zf-C3HC4_3	PF13920.6	gi|564289332|ref|YP_008875570.1|	-	0.16	11.9	0.9	0.24	11.3	0.9	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
TRPM_tetra	PF16519.5	gi|564289332|ref|YP_008875570.1|	-	0.16	12.1	2.1	13	6.0	0.1	3.2	3	0	0	3	3	3	0	Tetramerisation	domain	of	TRPM
Crust_neuro_H	PF03858.13	gi|564289332|ref|YP_008875570.1|	-	0.19	12.5	0.2	1.7	9.5	0.1	2.4	2	0	0	2	2	2	0	Crustacean	neurohormone	H
DUF4407	PF14362.6	gi|564289332|ref|YP_008875570.1|	-	0.21	10.9	10.9	0.24	10.7	8.8	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
HIP1_clath_bdg	PF16515.5	gi|564289332|ref|YP_008875570.1|	-	0.23	12.1	8.9	2.4	8.8	0.9	3.1	1	1	2	3	3	3	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
zinc_ribbon_4	PF13717.6	gi|564289332|ref|YP_008875570.1|	-	0.24	11.4	3.2	5.6	7.0	0.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Golgin_A5	PF09787.9	gi|564289332|ref|YP_008875570.1|	-	0.25	10.8	4.5	0.29	10.6	3.9	1.4	1	1	0	1	1	1	0	Golgin	subfamily	A	member	5
Atg14	PF10186.9	gi|564289332|ref|YP_008875570.1|	-	0.26	10.3	2.4	0.23	10.5	0.8	1.6	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
CCDC-167	PF15188.6	gi|564289332|ref|YP_008875570.1|	-	0.28	11.5	5.6	5.1	7.5	0.3	2.8	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	167
CLZ	PF16526.5	gi|564289332|ref|YP_008875570.1|	-	0.45	10.9	2.8	10	6.6	0.2	3.0	1	1	2	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Prominin	PF05478.11	gi|564289332|ref|YP_008875570.1|	-	0.58	8.0	2.4	1.4	6.8	1.7	1.7	1	1	1	2	2	2	0	Prominin
TolA_bind_tri	PF16331.5	gi|564289332|ref|YP_008875570.1|	-	0.59	10.2	4.5	0.71	10.0	0.5	3.0	2	1	1	3	3	2	0	TolA	binding	protein	trimerisation
FlaC_arch	PF05377.11	gi|564289332|ref|YP_008875570.1|	-	0.62	10.5	3.8	7.1	7.1	0.7	3.5	2	2	2	4	4	4	0	Flagella	accessory	protein	C	(FlaC)
DUF16	PF01519.16	gi|564289332|ref|YP_008875570.1|	-	0.74	10.3	3.6	7.6	7.1	3.4	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
DUF1664	PF07889.12	gi|564289332|ref|YP_008875570.1|	-	0.86	9.6	5.1	30	4.6	5.0	2.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Spectrin	PF00435.21	gi|564289332|ref|YP_008875570.1|	-	1.3	9.6	8.1	7.5	7.1	0.6	3.5	2	1	2	4	4	4	0	Spectrin	repeat
Spc7	PF08317.11	gi|564289332|ref|YP_008875570.1|	-	1.3	7.8	6.3	2.6	6.8	6.0	1.6	1	1	0	1	1	1	0	Spc7	kinetochore	protein
TBCC_N	PF16752.5	gi|564289332|ref|YP_008875570.1|	-	1.6	9.2	5.3	2.7	8.5	1.0	2.7	1	1	1	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
ARGLU	PF15346.6	gi|564289332|ref|YP_008875570.1|	-	1.9	8.3	8.0	2.5	8.0	7.4	1.6	1	1	0	1	1	1	0	Arginine	and	glutamate-rich	1
DUF5446	PF17522.2	gi|564289332|ref|YP_008875570.1|	-	2.2	8.5	7.7	19	5.5	0.1	2.9	2	2	0	2	2	2	0	Family	of	unknown	function	(DUF5446)
Pox_A_type_inc	PF04508.12	gi|564289332|ref|YP_008875570.1|	-	2.9	7.9	5.3	48	4.0	0.0	3.8	4	0	0	4	4	3	0	Viral	A-type	inclusion	protein	repeat
DUF1515	PF07439.11	gi|564289332|ref|YP_008875570.1|	-	4.1	7.5	7.2	1.3	9.1	1.7	2.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1515)
HSCB_C	PF07743.13	gi|564289332|ref|YP_008875570.1|	-	8.7	6.9	11.3	5	7.7	0.4	3.3	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
FYVE_2	PF02318.16	gi|564289332|ref|YP_008875570.1|	-	9.2	6.5	6.5	4.7	7.5	0.8	2.8	1	1	2	3	3	3	0	FYVE-type	zinc	finger
ATPase	PF06745.13	gi|564289333|ref|YP_008875571.1|	-	4.7e-10	39.2	0.1	9e-05	21.9	0.1	2.2	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.6	gi|564289333|ref|YP_008875571.1|	-	0.00017	21.3	0.7	0.028	14.0	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
Rad51	PF08423.11	gi|564289333|ref|YP_008875571.1|	-	0.0036	16.6	0.0	0.0087	15.4	0.0	1.6	2	0	0	2	2	2	1	Rad51
DUF438	PF04282.13	gi|564289333|ref|YP_008875571.1|	-	0.045	13.7	0.0	0.11	12.5	0.0	1.7	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF438)
Caroten_synth	PF04240.12	gi|564289334|ref|YP_008875572.1|	-	7.3e-66	222.0	17.8	9.6e-66	221.6	17.8	1.1	1	0	0	1	1	1	1	Carotenoid	biosynthesis	protein
UbiA	PF01040.18	gi|564289335|ref|YP_008875573.1|	-	9.2e-30	103.8	15.3	9.2e-30	103.8	15.3	1.6	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
PIG-Y	PF15159.6	gi|564289335|ref|YP_008875573.1|	-	0.018	16.0	1.8	0.018	16.0	1.8	3.3	3	1	0	3	3	3	0	Phosphatidylinositol	N-acetylglucosaminyltransferase	subunit	Y
DUF4349	PF14257.6	gi|564289335|ref|YP_008875573.1|	-	0.21	11.0	1.0	0.75	9.2	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4349)
Amino_oxidase	PF01593.24	gi|564289336|ref|YP_008875574.1|	-	5.6e-37	128.1	0.1	8.1e-37	127.6	0.1	1.2	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|564289336|ref|YP_008875574.1|	-	8.9e-18	64.3	0.1	2e-17	63.2	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564289336|ref|YP_008875574.1|	-	1.7e-12	47.6	5.5	1.7e-11	44.3	5.5	2.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|564289336|ref|YP_008875574.1|	-	7.6e-08	32.1	0.0	1.1e-07	31.5	0.0	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564289336|ref|YP_008875574.1|	-	3e-07	29.5	0.0	0.00061	18.6	0.4	2.2	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|564289336|ref|YP_008875574.1|	-	2.2e-06	27.0	1.4	4.8e-06	25.9	1.4	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564289336|ref|YP_008875574.1|	-	1.2e-05	24.7	2.7	4.8e-05	22.7	0.2	2.6	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564289336|ref|YP_008875574.1|	-	1.4e-05	25.6	1.0	0.00033	21.1	0.2	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564289336|ref|YP_008875574.1|	-	2.5e-05	23.7	0.4	0.0093	15.2	0.0	3.0	3	1	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564289336|ref|YP_008875574.1|	-	0.00016	20.9	0.5	0.00038	19.7	0.5	1.6	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.19	gi|564289336|ref|YP_008875574.1|	-	0.00042	19.7	0.4	0.00071	18.9	0.4	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Thi4	PF01946.17	gi|564289336|ref|YP_008875574.1|	-	0.00054	19.3	0.4	0.00092	18.5	0.4	1.3	1	0	0	1	1	1	1	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|564289336|ref|YP_008875574.1|	-	0.0071	15.7	0.2	0.012	14.9	0.2	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
MCRA	PF06100.11	gi|564289336|ref|YP_008875574.1|	-	0.012	14.4	0.0	0.022	13.6	0.0	1.3	1	0	0	1	1	1	0	MCRA	family
Trp_halogenase	PF04820.14	gi|564289336|ref|YP_008875574.1|	-	0.091	11.6	0.3	0.15	10.8	0.3	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
3HCDH_N	PF02737.18	gi|564289336|ref|YP_008875574.1|	-	0.095	12.6	0.2	0.2	11.5	0.2	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|564289336|ref|YP_008875574.1|	-	0.16	12.4	0.0	0.33	11.4	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
NAD_binding_9	PF13454.6	gi|564289336|ref|YP_008875574.1|	-	0.31	11.0	1.4	12	5.9	0.1	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Peptidase_M24	PF00557.24	gi|564289337|ref|YP_008875575.1|	-	2.7e-46	157.9	0.5	3.4e-46	157.6	0.5	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|564289337|ref|YP_008875575.1|	-	2.7e-08	34.5	0.1	8.7e-08	32.9	0.0	1.9	2	0	0	2	2	2	1	Creatinase/Prolidase	N-terminal	domain
RHH_1	PF01402.21	gi|564289338|ref|YP_008875577.1|	-	0.00019	21.2	0.0	0.00027	20.8	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
Ribosomal_L15e	PF00827.17	gi|564289338|ref|YP_008875577.1|	-	0.1	12.3	0.0	0.11	12.2	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	L15
DbpA	PF03880.15	gi|564289338|ref|YP_008875577.1|	-	0.15	12.0	0.0	0.29	11.2	0.0	1.5	1	1	0	1	1	1	0	DbpA	RNA	binding	domain
Glyoxalase	PF00903.25	gi|564289341|ref|YP_008875580.1|	-	3.3e-10	40.2	0.0	3.2e-05	24.1	0.0	2.4	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|564289341|ref|YP_008875580.1|	-	2.3e-05	25.1	1.4	0.29	11.9	0.1	2.6	2	1	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|564289341|ref|YP_008875580.1|	-	0.093	13.0	0.0	0.53	10.6	0.0	2.1	2	1	1	3	3	3	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.7	gi|564289341|ref|YP_008875580.1|	-	0.11	12.4	0.0	3.1	7.7	0.0	2.7	4	0	0	4	4	4	0	Glyoxalase-like	domain
DZR	PF12773.7	gi|564289342|ref|YP_008875581.1|	-	0.00036	20.5	0.5	0.00052	20.0	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
PhnA_Zn_Ribbon	PF08274.12	gi|564289342|ref|YP_008875581.1|	-	0.00046	20.1	1.5	0.01	15.7	2.4	2.0	1	1	1	2	2	2	2	PhnA	Zinc-Ribbon
zf_UBZ	PF18439.1	gi|564289342|ref|YP_008875581.1|	-	0.00096	18.7	4.6	0.08	12.6	1.2	2.5	2	0	0	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|564289342|ref|YP_008875581.1|	-	0.0029	17.3	1.7	0.95	9.3	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564289342|ref|YP_008875581.1|	-	0.0033	16.9	0.6	0.0096	15.4	0.7	1.7	1	1	1	2	2	2	1	TFIIB	zinc-binding
UPF0547	PF10571.9	gi|564289342|ref|YP_008875581.1|	-	0.0033	17.5	3.9	0.096	12.8	0.3	2.2	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
DUF3268	PF11672.8	gi|564289342|ref|YP_008875581.1|	-	0.0046	17.3	0.2	0.0059	16.9	0.2	1.2	1	0	0	1	1	1	1	zinc-finger-containing	domain
Zn-ribbon_8	PF09723.10	gi|564289342|ref|YP_008875581.1|	-	0.0057	16.7	1.4	2.3	8.4	0.1	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.13	gi|564289342|ref|YP_008875581.1|	-	0.006	16.2	0.4	0.44	10.3	0.0	2.2	2	0	0	2	2	2	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|564289342|ref|YP_008875581.1|	-	0.0068	15.8	1.0	0.92	9.0	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|564289342|ref|YP_008875581.1|	-	0.011	15.7	0.4	0.69	10.0	0.1	2.2	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
Zn_ribbon_recom	PF13408.6	gi|564289342|ref|YP_008875581.1|	-	0.026	15.0	1.7	0.19	12.3	1.4	2.0	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
GFA	PF04828.14	gi|564289342|ref|YP_008875581.1|	-	0.026	14.8	1.7	2.7	8.4	0.1	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-ISL3	PF14690.6	gi|564289342|ref|YP_008875581.1|	-	0.031	14.9	1.0	1.7	9.4	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF1610	PF07754.11	gi|564289342|ref|YP_008875581.1|	-	0.032	14.2	1.0	6.2	6.9	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-NADH-PPase	PF09297.11	gi|564289342|ref|YP_008875581.1|	-	0.038	13.7	5.8	0.87	9.3	0.6	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
HypA	PF01155.19	gi|564289342|ref|YP_008875581.1|	-	0.046	13.7	0.3	0.061	13.3	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-LITAF-like	PF10601.9	gi|564289342|ref|YP_008875581.1|	-	0.06	13.6	4.0	0.48	10.7	0.7	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_10	PF10058.9	gi|564289342|ref|YP_008875581.1|	-	0.071	12.8	0.8	1.2	9.0	0.8	2.0	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
OrfB_Zn_ribbon	PF07282.11	gi|564289342|ref|YP_008875581.1|	-	0.074	13.0	1.5	0.27	11.2	1.4	1.8	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-H2C2_2	PF13465.6	gi|564289342|ref|YP_008875581.1|	-	0.074	13.5	3.9	0.17	12.4	0.8	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
DNA_ligase_ZBD	PF03119.16	gi|564289342|ref|YP_008875581.1|	-	0.078	13.0	2.0	7.7	6.6	0.2	2.4	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF1272	PF06906.11	gi|564289342|ref|YP_008875581.1|	-	0.081	13.0	0.7	1.5	9.0	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zinc-ribbons_6	PF07191.12	gi|564289342|ref|YP_008875581.1|	-	0.088	12.8	1.4	0.37	10.8	1.5	1.8	1	1	1	2	2	2	0	zinc-ribbons
Zn_ribbon_SprT	PF17283.2	gi|564289342|ref|YP_008875581.1|	-	0.1	12.5	5.1	0.49	10.3	0.6	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-C2H2	PF00096.26	gi|564289342|ref|YP_008875581.1|	-	0.1	13.1	2.9	2.9	8.5	0.3	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Terminase_GpA	PF05876.12	gi|564289342|ref|YP_008875581.1|	-	0.12	10.9	0.7	0.14	10.7	0.7	1.1	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
A2L_zn_ribbon	PF08792.10	gi|564289342|ref|YP_008875581.1|	-	0.13	12.0	0.3	2.8	7.8	0.0	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_6	PF14599.6	gi|564289342|ref|YP_008875581.1|	-	0.22	11.6	4.0	1.7	8.7	0.0	2.7	2	1	1	3	3	3	0	Zinc-ribbon
Ogr_Delta	PF04606.12	gi|564289342|ref|YP_008875581.1|	-	0.29	11.1	5.1	4.3	7.4	1.0	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-Mss51	PF13824.6	gi|564289342|ref|YP_008875581.1|	-	0.29	11.2	4.8	1.4	9.1	0.2	2.2	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
CpXC	PF14353.6	gi|564289342|ref|YP_008875581.1|	-	0.38	10.8	1.9	9.4	6.3	0.0	2.1	1	1	1	2	2	2	0	CpXC	protein
Zn_Tnp_IS1595	PF12760.7	gi|564289342|ref|YP_008875581.1|	-	0.9	9.6	7.2	4.8	7.3	5.9	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
HMGL-like	PF00682.19	gi|564289344|ref|YP_008875583.1|	-	9.8e-83	277.7	3.5	9.8e-83	277.7	3.5	1.4	2	0	0	2	2	2	1	HMGL-like
AP_endonuc_2	PF01261.24	gi|564289344|ref|YP_008875583.1|	-	0.00074	19.0	0.5	0.0075	15.7	0.1	2.3	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
TPP_enzyme_N	PF02776.18	gi|564289345|ref|YP_008875584.1|	-	9.7e-52	175.0	0.2	2.2e-51	173.9	0.2	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|564289345|ref|YP_008875584.1|	-	1.7e-51	174.1	0.3	6.1e-51	172.2	0.0	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|564289345|ref|YP_008875584.1|	-	4.2e-47	159.3	0.0	7.5e-47	158.5	0.0	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.16	gi|564289345|ref|YP_008875584.1|	-	0.013	15.3	0.0	0.023	14.5	0.0	1.3	1	0	0	1	1	1	0	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
XFP_N	PF09364.10	gi|564289345|ref|YP_008875584.1|	-	0.1	11.4	0.0	0.16	10.8	0.0	1.2	1	0	0	1	1	1	0	XFP	N-terminal	domain
ALS_ss_C	PF10369.9	gi|564289346|ref|YP_008875585.1|	-	6.8e-23	80.7	0.1	1.2e-22	79.9	0.1	1.4	1	0	0	1	1	1	1	Small	subunit	of	acetolactate	synthase
ACT	PF01842.25	gi|564289346|ref|YP_008875585.1|	-	2.2e-13	49.7	0.2	7e-13	48.1	0.0	2.0	2	0	0	2	2	2	1	ACT	domain
ACT_5	PF13710.6	gi|564289346|ref|YP_008875585.1|	-	2.5e-12	46.5	0.0	5.7e-12	45.3	0.0	1.7	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|564289346|ref|YP_008875585.1|	-	0.0032	18.0	0.0	0.0059	17.2	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
NIL	PF09383.10	gi|564289346|ref|YP_008875585.1|	-	0.014	15.2	0.1	4.1	7.3	0.0	2.7	2	1	0	2	2	2	0	NIL	domain
Acylphosphatase	PF00708.18	gi|564289346|ref|YP_008875585.1|	-	0.066	13.6	0.2	15	6.1	0.0	2.8	3	0	0	3	3	3	0	Acylphosphatase
KH_1	PF00013.29	gi|564289346|ref|YP_008875585.1|	-	0.093	12.6	0.6	0.74	9.7	0.2	2.6	2	1	0	2	2	2	0	KH	domain
IlvN	PF07991.12	gi|564289347|ref|YP_008875586.1|	-	3.6e-71	238.1	0.1	5.1e-71	237.6	0.1	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
IlvC	PF01450.19	gi|564289347|ref|YP_008875586.1|	-	4.3e-60	202.2	1.3	6.3e-60	201.6	1.3	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.17	gi|564289347|ref|YP_008875586.1|	-	5.1e-07	30.2	0.0	1e-06	29.2	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|564289347|ref|YP_008875586.1|	-	3.1e-05	23.4	0.0	5.4e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|564289347|ref|YP_008875586.1|	-	0.00055	20.1	0.0	0.001	19.3	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.16	gi|564289347|ref|YP_008875586.1|	-	0.0018	17.9	0.0	0.003	17.2	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
DMP12	PF16779.5	gi|564289347|ref|YP_008875586.1|	-	0.13	12.2	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	DNA-mimic	protein
Aconitase	PF00330.20	gi|564289349|ref|YP_008875588.1|	-	6.3e-148	493.6	0.0	7.2e-148	493.4	0.0	1.0	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.13	gi|564289349|ref|YP_008875588.1|	-	0.0018	17.0	0.0	0.0031	16.3	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
DUF3944	PF13099.6	gi|564289349|ref|YP_008875588.1|	-	0.076	12.9	0.0	0.24	11.3	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3944)
Aconitase_C	PF00694.19	gi|564289350|ref|YP_008875589.1|	-	8e-18	65.0	0.0	1.3e-17	64.4	0.0	1.3	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Cas_Cas02710	PF09670.10	gi|564289351|ref|YP_008875590.1|	-	0.00046	19.1	0.0	0.00059	18.8	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas02710)
KR	PF08659.10	gi|564289351|ref|YP_008875590.1|	-	0.038	13.9	0.0	0.059	13.3	0.0	1.3	1	0	0	1	1	1	0	KR	domain
DUF4364	PF14277.6	gi|564289351|ref|YP_008875590.1|	-	0.051	13.3	0.0	0.09	12.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
ThiC_Rad_SAM	PF01964.18	gi|564289351|ref|YP_008875590.1|	-	0.11	11.2	0.1	0.17	10.7	0.1	1.1	1	0	0	1	1	1	0	Radical	SAM	ThiC	family
Iso_dh	PF00180.20	gi|564289352|ref|YP_008875591.1|	-	5.4e-93	311.9	0.1	6.1e-93	311.7	0.1	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
DeoRC	PF00455.22	gi|564289353|ref|YP_008875592.1|	-	3.8e-52	176.5	0.0	5.3e-52	176.0	0.0	1.2	1	0	0	1	1	1	1	DeoR	C	terminal	sensor	domain
HTH_DeoR	PF08220.12	gi|564289353|ref|YP_008875592.1|	-	2.1e-16	59.4	0.1	3.4e-16	58.7	0.1	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564289353|ref|YP_008875592.1|	-	7.4e-08	32.2	0.2	1.2e-07	31.5	0.2	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_5	PF01022.20	gi|564289353|ref|YP_008875592.1|	-	3.9e-06	26.6	0.0	7.7e-06	25.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564289353|ref|YP_008875592.1|	-	9e-06	25.5	0.1	2.5e-05	24.0	0.1	1.7	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|564289353|ref|YP_008875592.1|	-	4.6e-05	23.0	0.0	0.00015	21.4	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|564289353|ref|YP_008875592.1|	-	0.00013	22.0	0.6	0.00039	20.4	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|564289353|ref|YP_008875592.1|	-	0.00024	21.0	0.1	0.00043	20.2	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564289353|ref|YP_008875592.1|	-	0.00039	19.9	0.2	0.00076	19.0	0.2	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564289353|ref|YP_008875592.1|	-	0.0009	19.0	0.1	0.0019	17.9	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
DUF742	PF05331.11	gi|564289353|ref|YP_008875592.1|	-	0.0024	17.7	0.0	0.0064	16.3	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
FaeA	PF04703.12	gi|564289353|ref|YP_008875592.1|	-	0.0027	18.0	0.1	0.068	13.6	0.0	2.3	2	0	0	2	2	2	1	FaeA-like	protein
HTH_28	PF13518.6	gi|564289353|ref|YP_008875592.1|	-	0.0031	17.6	0.1	0.0072	16.4	0.1	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
RPA_C	PF08784.11	gi|564289353|ref|YP_008875592.1|	-	0.011	16.4	0.0	0.034	14.8	0.0	1.8	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
TrmB	PF01978.19	gi|564289353|ref|YP_008875592.1|	-	0.016	15.1	0.0	0.035	14.0	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_29	PF13551.6	gi|564289353|ref|YP_008875592.1|	-	0.025	14.6	0.3	0.065	13.3	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_38	PF13936.6	gi|564289353|ref|YP_008875592.1|	-	0.035	13.9	0.1	0.08	12.7	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_ECF	PF07638.11	gi|564289353|ref|YP_008875592.1|	-	0.05	13.5	0.0	0.096	12.6	0.0	1.4	1	0	0	1	1	1	0	ECF	sigma	factor
Mga	PF05043.13	gi|564289353|ref|YP_008875592.1|	-	0.054	14.1	0.0	0.1	13.2	0.0	1.3	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|564289353|ref|YP_008875592.1|	-	0.058	13.6	0.2	0.11	12.8	0.2	1.5	1	0	0	1	1	1	0	Transposase
DDRGK	PF09756.9	gi|564289353|ref|YP_008875592.1|	-	0.075	12.6	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	DDRGK	domain
Fe_dep_repress	PF01325.19	gi|564289353|ref|YP_008875592.1|	-	0.095	12.9	0.0	0.18	12.0	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Mga	PF08280.11	gi|564289353|ref|YP_008875592.1|	-	0.098	12.7	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Rrf2	PF02082.20	gi|564289353|ref|YP_008875592.1|	-	0.1	13.0	0.0	0.22	11.9	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
Put_DNA-bind_N	PF06971.13	gi|564289353|ref|YP_008875592.1|	-	0.11	12.6	0.0	0.23	11.5	0.0	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_36	PF13730.6	gi|564289353|ref|YP_008875592.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Phage_NinH	PF06322.11	gi|564289353|ref|YP_008875592.1|	-	0.16	11.9	0.0	0.49	10.3	0.0	1.8	1	0	0	1	1	1	0	Phage	NinH	protein
Sigma70_r4	PF04545.16	gi|564289353|ref|YP_008875592.1|	-	0.17	11.5	1.9	0.18	11.4	0.2	2.0	2	0	0	2	2	1	0	Sigma-70,	region	4
PfkB	PF00294.24	gi|564289354|ref|YP_008875593.1|	-	8e-41	140.3	3.7	1.1e-40	139.9	3.7	1.1	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.12	gi|564289354|ref|YP_008875593.1|	-	0.049	13.0	0.0	0.079	12.3	0.0	1.3	1	0	0	1	1	1	0	Phosphomethylpyrimidine	kinase
PfkB	PF00294.24	gi|564289355|ref|YP_008875594.1|	-	0.014	14.7	3.6	0.022	14.0	3.6	1.2	1	0	0	1	1	1	0	pfkB	family	carbohydrate	kinase
DeoC	PF01791.9	gi|564289356|ref|YP_008875595.1|	-	9.5e-35	120.3	0.0	1.1e-34	120.1	0.0	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
VAPB_antitox	PF02697.14	gi|564289357|ref|YP_008875596.1|	-	0.033	15.0	0.2	0.034	14.9	0.2	1.1	1	0	0	1	1	1	0	Putative	antitoxin
FIST	PF08495.10	gi|564289359|ref|YP_008875598.1|	-	1.2e-31	110.1	0.5	2.1e-30	106.0	0.2	2.3	2	1	0	2	2	2	1	FIST	N	domain
FIST_C	PF10442.9	gi|564289359|ref|YP_008875598.1|	-	1e-21	77.2	0.1	1e-20	74.0	0.0	2.2	2	0	0	2	2	2	1	FIST	C	domain
OsmC	PF02566.19	gi|564289360|ref|YP_008875599.1|	-	4.9e-13	49.4	0.0	7.2e-13	48.9	0.0	1.2	1	0	0	1	1	1	1	OsmC-like	protein
UbiA	PF01040.18	gi|564289362|ref|YP_008875601.1|	-	2.5e-12	46.7	25.7	1.4e-11	44.2	24.6	2.2	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
DnaJ	PF00226.31	gi|564289363|ref|YP_008875602.1|	-	7.6e-19	67.6	0.0	1.1e-18	67.0	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
DUF1684	PF07920.11	gi|564289364|ref|YP_008875603.1|	-	1.1e-50	171.5	0.1	1.6e-50	171.1	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1684)
CPBP	PF02517.16	gi|564289365|ref|YP_008875604.1|	-	6.1e-14	52.2	0.1	6.1e-14	52.2	0.1	2.3	3	0	0	3	3	3	1	CPBP	intramembrane	metalloprotease
UCR_Fe-S_N	PF10399.9	gi|564289365|ref|YP_008875604.1|	-	1.6	8.1	6.2	2.8	7.3	4.2	2.3	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Phage_Coat_Gp8	PF05371.12	gi|564289365|ref|YP_008875604.1|	-	4	7.3	4.9	2.8	7.8	2.7	1.9	1	1	1	2	2	2	0	Phage	major	coat	protein,	Gp8
PAS_9	PF13426.7	gi|564289366|ref|YP_008875605.1|	-	1.2e-22	80.1	0.0	3.8e-11	43.2	0.0	2.6	2	0	0	2	2	2	2	PAS	domain
Response_reg	PF00072.24	gi|564289366|ref|YP_008875605.1|	-	2.5e-22	79.1	0.0	6.1e-22	77.9	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS	PF00989.25	gi|564289366|ref|YP_008875605.1|	-	1.3e-18	67.1	0.1	5e-08	32.9	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.10	gi|564289366|ref|YP_008875605.1|	-	3.9e-16	59.3	0.4	8e-08	32.5	0.1	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.7	gi|564289366|ref|YP_008875605.1|	-	1.6e-09	37.6	0.1	0.002	18.1	0.0	2.9	2	0	0	2	2	2	2	PAS	domain
PAS_3	PF08447.12	gi|564289366|ref|YP_008875605.1|	-	3.9e-07	30.3	1.2	6.1e-05	23.2	0.0	3.2	3	1	0	3	3	3	1	PAS	fold
GAF	PF01590.26	gi|564289366|ref|YP_008875605.1|	-	8.4e-05	23.2	0.0	0.00033	21.3	0.0	2.0	2	0	0	2	2	2	1	GAF	domain
PAS_7	PF12860.7	gi|564289366|ref|YP_008875605.1|	-	0.0025	18.0	0.0	4.3	7.5	0.0	3.2	2	1	0	2	2	2	2	PAS	fold
GAF_3	PF13492.6	gi|564289366|ref|YP_008875605.1|	-	0.024	15.0	0.0	0.096	13.0	0.0	2.0	2	0	0	2	2	2	0	GAF	domain
OKR_DC_1_N	PF03709.15	gi|564289366|ref|YP_008875605.1|	-	0.073	13.3	0.0	0.21	11.9	0.0	1.8	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
MLTR_LBD	PF17765.1	gi|564289366|ref|YP_008875605.1|	-	0.15	12.1	2.8	0.27	11.3	0.7	2.5	2	1	0	2	2	2	0	MmyB-like	transcription	regulator	ligand	binding	domain
DctM	PF06808.12	gi|564289367|ref|YP_008875606.1|	-	6.8e-61	206.3	39.1	6.8e-61	206.3	39.1	1.6	1	1	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
NMT1_3	PF16868.5	gi|564289368|ref|YP_008875607.1|	-	1e-27	97.4	0.0	1.3e-27	97.0	0.0	1.1	1	0	0	1	1	1	1	NMT1-like	family
TAT_signal	PF10518.9	gi|564289368|ref|YP_008875607.1|	-	0.003	17.4	0.3	0.0093	15.8	0.3	1.9	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DAO	PF01266.24	gi|564289369|ref|YP_008875608.1|	-	2.1e-10	40.7	0.1	0.00023	20.8	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|564289369|ref|YP_008875608.1|	-	4.4e-09	36.1	1.4	0.00014	21.2	0.3	2.1	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564289369|ref|YP_008875608.1|	-	1.1e-08	34.7	0.7	0.00018	20.8	0.5	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|564289369|ref|YP_008875608.1|	-	1.6e-06	27.1	1.4	0.0012	17.6	1.4	2.2	2	0	0	2	2	2	2	HI0933-like	protein
Trp_halogenase	PF04820.14	gi|564289369|ref|YP_008875608.1|	-	1.4e-05	24.1	1.5	0.0073	15.2	0.0	2.1	1	1	0	2	2	2	2	Tryptophan	halogenase
NAD_binding_8	PF13450.6	gi|564289369|ref|YP_008875608.1|	-	0.00013	22.1	0.3	0.0004	20.6	0.3	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|564289369|ref|YP_008875608.1|	-	0.00017	21.1	4.5	0.00031	20.2	4.2	1.5	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|564289369|ref|YP_008875608.1|	-	0.00029	20.1	2.2	0.0027	16.9	1.0	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|564289369|ref|YP_008875608.1|	-	0.00077	19.5	0.6	0.52	10.3	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
FAD_binding_2	PF00890.24	gi|564289369|ref|YP_008875608.1|	-	0.00093	18.4	3.3	0.00093	18.4	3.3	1.9	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|564289369|ref|YP_008875608.1|	-	0.0045	16.3	0.5	0.015	14.5	0.6	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564289369|ref|YP_008875608.1|	-	0.0074	15.4	0.9	0.52	9.3	0.6	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Thi4	PF01946.17	gi|564289369|ref|YP_008875608.1|	-	0.074	12.3	0.2	0.12	11.5	0.2	1.3	1	0	0	1	1	1	0	Thi4	family
AlaDh_PNT_C	PF01262.21	gi|564289369|ref|YP_008875608.1|	-	0.11	11.8	0.5	0.17	11.2	0.5	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Response_reg	PF00072.24	gi|564289370|ref|YP_008875609.1|	-	1.6e-14	54.0	0.7	2.7e-14	53.3	0.1	1.6	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|564289370|ref|YP_008875609.1|	-	0.00026	21.2	6.5	0.00026	21.2	6.5	1.9	2	0	0	2	2	2	1	HalX	domain
2-Hacid_dh_C	PF02826.19	gi|564289371|ref|YP_008875610.1|	-	2.9e-51	173.3	0.0	4.1e-51	172.8	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|564289371|ref|YP_008875610.1|	-	9.5e-09	35.0	0.0	1.2e-08	34.7	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|564289371|ref|YP_008875610.1|	-	0.0044	17.2	0.0	0.0069	16.6	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|564289371|ref|YP_008875610.1|	-	0.12	12.5	0.0	0.41	10.7	0.0	1.9	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.17	gi|564289371|ref|YP_008875610.1|	-	0.15	12.7	0.0	0.31	11.7	0.0	1.5	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
DpaA_N	PF16924.5	gi|564289371|ref|YP_008875610.1|	-	0.18	11.9	0.0	0.31	11.1	0.0	1.3	1	0	0	1	1	1	0	Dipicolinate	synthase	subunit	A	N-terminal	domain
Semialdhyde_dh	PF01118.24	gi|564289372|ref|YP_008875611.1|	-	9.6e-33	113.2	0.0	2e-32	112.2	0.0	1.5	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|564289372|ref|YP_008875611.1|	-	1.1e-31	110.3	0.0	1.6e-31	109.8	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DapB_N	PF01113.20	gi|564289372|ref|YP_008875611.1|	-	0.00086	19.4	0.0	0.0023	18.1	0.0	1.7	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
DXP_reductoisom	PF02670.16	gi|564289372|ref|YP_008875611.1|	-	0.0021	18.8	0.0	0.004	17.9	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
GFO_IDH_MocA	PF01408.22	gi|564289372|ref|YP_008875611.1|	-	0.031	15.1	0.0	0.054	14.3	0.0	1.4	1	0	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Phage_Coat_A	PF05357.13	gi|564289372|ref|YP_008875611.1|	-	0.18	11.6	0.0	0.43	10.4	0.0	1.5	1	0	0	1	1	1	0	Phage	Coat	Protein	A
Alkyl_sulf_dimr	PF14863.6	gi|564289372|ref|YP_008875611.1|	-	0.2	12.1	0.0	0.33	11.4	0.0	1.2	1	0	0	1	1	1	0	Alkyl	sulfatase	dimerisation
AAA_12	PF13087.6	gi|564289374|ref|YP_008875613.1|	-	5.9e-44	150.1	0.0	1.1e-43	149.2	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|564289374|ref|YP_008875613.1|	-	1.1e-32	113.9	0.0	3.5e-17	63.1	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|564289374|ref|YP_008875613.1|	-	9.1e-16	58.1	0.4	1.7e-15	57.2	0.4	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|564289374|ref|YP_008875613.1|	-	5.2e-09	36.6	0.0	1.9e-08	34.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
Viral_helicase1	PF01443.18	gi|564289374|ref|YP_008875613.1|	-	2.3e-06	27.5	0.0	0.14	11.9	0.0	3.2	3	0	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
ResIII	PF04851.15	gi|564289374|ref|YP_008875613.1|	-	0.00092	19.3	0.0	0.0023	18.0	0.0	1.6	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_RecD	PF05127.14	gi|564289374|ref|YP_008875613.1|	-	0.0011	18.9	0.0	0.0022	17.9	0.0	1.5	1	0	0	1	1	1	1	Helicase
AAA_25	PF13481.6	gi|564289374|ref|YP_008875613.1|	-	0.0032	17.1	1.0	0.019	14.5	0.1	2.5	3	0	0	3	3	3	1	AAA	domain
AAA_16	PF13191.6	gi|564289374|ref|YP_008875613.1|	-	0.012	16.0	0.1	0.044	14.2	0.0	2.1	2	0	0	2	2	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289374|ref|YP_008875613.1|	-	0.017	15.4	0.0	0.039	14.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|564289374|ref|YP_008875613.1|	-	0.04	13.2	0.0	0.28	10.4	0.0	2.3	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
UvrD_C_2	PF13538.6	gi|564289374|ref|YP_008875613.1|	-	0.04	13.7	0.6	0.21	11.4	0.2	2.5	2	1	0	2	2	2	0	UvrD-like	helicase	C-terminal	domain
PhoH	PF02562.16	gi|564289374|ref|YP_008875613.1|	-	0.048	13.1	0.0	0.56	9.6	0.0	2.1	2	0	0	2	2	2	0	PhoH-like	protein
FAM27	PF15832.5	gi|564289374|ref|YP_008875613.1|	-	0.07	13.7	1.5	0.17	12.5	1.5	1.6	1	0	0	1	1	1	0	FAM27	D	and	E	protein	family
AAA	PF00004.29	gi|564289374|ref|YP_008875613.1|	-	0.079	13.4	0.0	0.17	12.3	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|564289374|ref|YP_008875613.1|	-	0.16	11.7	0.0	0.36	10.5	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_24	PF13479.6	gi|564289374|ref|YP_008875613.1|	-	0.17	11.6	0.0	0.38	10.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PIF1	PF05970.14	gi|564289374|ref|YP_008875613.1|	-	0.17	11.0	0.0	0.65	9.1	0.0	1.8	2	0	0	2	2	2	0	PIF1-like	helicase
tRNA-synt_1b	PF00579.25	gi|564289375|ref|YP_008875614.1|	-	3.2e-59	200.7	0.0	3.9e-59	200.4	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Methyltransf_11	PF08241.12	gi|564289376|ref|YP_008875615.1|	-	2.2e-19	69.9	0.2	3.8e-19	69.1	0.2	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564289376|ref|YP_008875615.1|	-	2.9e-18	66.4	0.1	6.5e-18	65.2	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564289376|ref|YP_008875615.1|	-	4.7e-10	39.5	0.0	6.5e-10	39.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564289376|ref|YP_008875615.1|	-	1e-09	39.0	0.1	2.2e-09	38.0	0.1	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564289376|ref|YP_008875615.1|	-	2.3e-09	37.3	0.0	2.9e-09	37.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.11	gi|564289376|ref|YP_008875615.1|	-	3.4e-05	23.6	0.0	4.6e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
Methyltransf_9	PF08003.11	gi|564289376|ref|YP_008875615.1|	-	0.013	14.4	0.0	0.017	14.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Methyltransf_8	PF05148.15	gi|564289376|ref|YP_008875615.1|	-	0.017	14.9	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
MetW	PF07021.12	gi|564289376|ref|YP_008875615.1|	-	0.049	13.2	0.0	0.066	12.8	0.0	1.1	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
PCMT	PF01135.19	gi|564289376|ref|YP_008875615.1|	-	0.1	12.3	0.0	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
IMS	PF00817.20	gi|564289377|ref|YP_008875617.1|	-	2.1e-39	134.9	0.3	3.4e-39	134.2	0.3	1.3	1	0	0	1	1	1	1	impB/mucB/samB	family
IMS_C	PF11799.8	gi|564289377|ref|YP_008875617.1|	-	5.1e-12	46.5	0.0	9.7e-12	45.6	0.0	1.4	1	0	0	1	1	1	1	impB/mucB/samB	family	C-terminal	domain
IMS_HHH	PF11798.8	gi|564289377|ref|YP_008875617.1|	-	2.2e-06	27.6	0.0	4.6e-06	26.6	0.0	1.6	1	0	0	1	1	1	1	IMS	family	HHH	motif
HHH_5	PF14520.6	gi|564289377|ref|YP_008875617.1|	-	2.7e-05	24.7	0.0	8.3e-05	23.1	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|564289377|ref|YP_008875617.1|	-	0.00014	21.6	0.0	0.0056	16.5	0.0	2.4	2	0	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
DUF1805	PF08827.11	gi|564289377|ref|YP_008875617.1|	-	0.0059	16.9	0.5	0.073	13.4	0.0	2.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1805)
Cdd1	PF11731.8	gi|564289377|ref|YP_008875617.1|	-	0.023	14.9	0.0	0.051	13.8	0.0	1.5	1	0	0	1	1	1	0	Pathogenicity	locus
CinA	PF02464.17	gi|564289377|ref|YP_008875617.1|	-	0.086	12.4	0.2	0.25	10.9	0.2	1.8	1	0	0	1	1	1	0	Competence-damaged	protein
Nitroreductase	PF00881.24	gi|564289379|ref|YP_008875619.1|	-	2.5e-32	112.3	0.0	2.9e-32	112.1	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|564289379|ref|YP_008875619.1|	-	3.8e-05	23.4	0.0	0.36	10.3	0.1	2.8	2	1	1	3	3	3	3	Putative	TM	nitroreductase
DUF87	PF01935.17	gi|564289380|ref|YP_008875620.1|	-	4.9e-13	49.7	6.0	5.9e-13	49.4	0.0	2.6	3	0	0	3	3	2	1	Helicase	HerA,	central	domain
DUF853	PF05872.12	gi|564289380|ref|YP_008875620.1|	-	1.6e-05	23.7	0.3	0.001	17.8	0.0	2.5	2	1	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
CbiA	PF01656.23	gi|564289380|ref|YP_008875620.1|	-	0.0013	18.8	0.0	0.0031	17.6	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
JIP_LZII	PF16471.5	gi|564289380|ref|YP_008875620.1|	-	0.0026	17.9	5.9	0.0077	16.4	5.9	1.8	1	0	0	1	1	1	1	JNK-interacting	protein	leucine	zipper	II
UPF0242	PF06785.11	gi|564289380|ref|YP_008875620.1|	-	0.0034	17.5	1.2	0.0069	16.5	1.2	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF4763	PF15960.5	gi|564289380|ref|YP_008875620.1|	-	0.004	16.5	1.3	0.0094	15.3	1.3	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4763)
AAA	PF00004.29	gi|564289380|ref|YP_008875620.1|	-	0.0088	16.5	1.0	0.17	12.3	0.0	2.9	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
HMMR_N	PF15905.5	gi|564289380|ref|YP_008875620.1|	-	0.013	15.0	5.8	0.024	14.1	5.8	1.4	1	0	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
TMF_DNA_bd	PF12329.8	gi|564289380|ref|YP_008875620.1|	-	0.014	15.4	6.2	0.053	13.5	6.2	2.0	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
APS_kinase	PF01583.20	gi|564289380|ref|YP_008875620.1|	-	0.015	15.2	0.2	0.056	13.3	0.0	2.1	2	0	0	2	2	2	0	Adenylylsulphate	kinase
AAA_10	PF12846.7	gi|564289380|ref|YP_008875620.1|	-	0.018	14.0	2.6	0.06	12.3	0.1	2.5	2	1	1	3	3	3	0	AAA-like	domain
FTA4	PF13093.6	gi|564289380|ref|YP_008875620.1|	-	0.02	14.8	0.4	0.02	14.8	0.4	2.3	3	0	0	3	3	2	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
AAA_18	PF13238.6	gi|564289380|ref|YP_008875620.1|	-	0.026	15.1	0.6	0.086	13.4	0.0	2.2	2	0	0	2	2	1	0	AAA	domain
AAA_16	PF13191.6	gi|564289380|ref|YP_008875620.1|	-	0.027	14.9	0.1	0.027	14.9	0.1	3.1	3	1	0	3	3	3	0	AAA	ATPase	domain
EzrA	PF06160.12	gi|564289380|ref|YP_008875620.1|	-	0.028	12.6	3.0	0.05	11.8	3.0	1.3	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
Fib_alpha	PF08702.10	gi|564289380|ref|YP_008875620.1|	-	0.057	13.6	0.4	0.13	12.4	0.4	1.7	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Med9	PF07544.13	gi|564289380|ref|YP_008875620.1|	-	0.064	13.3	3.2	0.16	12.1	3.2	1.6	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
TrwB_AAD_bind	PF10412.9	gi|564289380|ref|YP_008875620.1|	-	0.064	12.2	0.1	0.31	9.9	0.0	2.1	3	0	0	3	3	3	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
SKA1	PF07160.12	gi|564289380|ref|YP_008875620.1|	-	0.069	13.0	5.1	0.14	12.0	5.1	1.4	1	0	0	1	1	1	0	Spindle	and	kinetochore-associated	protein	1
AAA_13	PF13166.6	gi|564289380|ref|YP_008875620.1|	-	0.075	11.7	5.6	0.13	10.8	5.6	1.4	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564289380|ref|YP_008875620.1|	-	0.085	12.7	0.5	1.8	8.5	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
zf-C4H2	PF10146.9	gi|564289380|ref|YP_008875620.1|	-	0.13	12.6	1.0	0.24	11.7	1.0	1.5	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Zot	PF05707.12	gi|564289380|ref|YP_008875620.1|	-	0.14	11.8	0.1	2	8.0	0.0	2.2	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
AAA_31	PF13614.6	gi|564289380|ref|YP_008875620.1|	-	0.19	11.6	0.0	0.47	10.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF3496	PF12001.8	gi|564289380|ref|YP_008875620.1|	-	0.24	11.8	2.1	0.58	10.6	2.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3496)
Atg14	PF10186.9	gi|564289380|ref|YP_008875620.1|	-	0.38	9.8	1.6	0.61	9.1	1.6	1.2	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Hpr_kinase_C	PF07475.12	gi|564289380|ref|YP_008875620.1|	-	0.56	9.7	2.2	12	5.4	0.1	2.2	2	0	0	2	2	2	0	HPr	Serine	kinase	C-terminal	domain
DUF724	PF05266.14	gi|564289380|ref|YP_008875620.1|	-	0.66	9.8	5.0	1.5	8.6	5.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
V_ATPase_I	PF01496.19	gi|564289380|ref|YP_008875620.1|	-	0.76	7.6	2.3	1.1	7.1	2.3	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Spc24	PF08286.11	gi|564289380|ref|YP_008875620.1|	-	0.95	9.7	4.7	2.9	8.2	4.7	1.9	1	0	0	1	1	1	0	Spc24	subunit	of	Ndc80
PKcGMP_CC	PF16808.5	gi|564289380|ref|YP_008875620.1|	-	1	9.3	5.2	5.3	7.0	5.2	2.3	1	1	0	1	1	1	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
DUF3450	PF11932.8	gi|564289380|ref|YP_008875620.1|	-	1.1	8.5	10.9	0.11	11.7	6.3	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
DLP_helical	PF18709.1	gi|564289380|ref|YP_008875620.1|	-	1.6	7.8	7.2	0.51	9.5	2.3	2.1	2	0	0	2	2	2	0	Dynamin-like	helical	domain
CLZ	PF16526.5	gi|564289380|ref|YP_008875620.1|	-	1.7	9.0	8.1	3	8.2	4.1	3.0	3	0	0	3	3	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
RPW8	PF05659.11	gi|564289380|ref|YP_008875620.1|	-	2.3	7.9	5.4	0.68	9.6	1.2	2.0	2	0	0	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DivIC	PF04977.15	gi|564289380|ref|YP_008875620.1|	-	2.9	7.7	7.8	2.8	7.8	5.7	2.1	2	0	0	2	2	1	0	Septum	formation	initiator
DUF2203	PF09969.9	gi|564289380|ref|YP_008875620.1|	-	7.7	7.3	7.4	3.9	8.2	2.3	2.9	3	0	0	3	3	2	0	Uncharacterized	conserved	protein	(DUF2203)
OAD_gamma	PF04277.13	gi|564289380|ref|YP_008875620.1|	-	8.9	7.0	6.5	31	5.3	6.5	2.0	1	0	0	1	1	1	0	Oxaloacetate	decarboxylase,	gamma	chain
AAA_22	PF13401.6	gi|564289380|ref|YP_008875620.1|	-	9.7	6.5	6.8	7.9	6.8	0.3	3.2	3	2	0	3	3	3	0	AAA	domain
TIM	PF00121.18	gi|564289381|ref|YP_008875621.1|	-	4.3e-07	29.6	0.0	8.5e-07	28.6	0.0	1.5	1	1	1	2	2	2	1	Triosephosphate	isomerase
ThiG	PF05690.14	gi|564289381|ref|YP_008875621.1|	-	0.0001	21.7	1.0	0.0001	21.7	1.0	1.9	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.18	gi|564289381|ref|YP_008875621.1|	-	0.0034	16.5	3.2	0.0075	15.3	3.2	1.5	1	0	0	1	1	1	1	FMN-dependent	dehydrogenase
Response_reg	PF00072.24	gi|564289382|ref|YP_008875622.1|	-	5.9e-18	65.1	0.7	9.5e-18	64.4	0.7	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|564289382|ref|YP_008875622.1|	-	2e-14	53.7	9.0	4.5e-14	52.5	9.0	1.7	1	0	0	1	1	1	1	HalX	domain
CorA	PF01544.18	gi|564289382|ref|YP_008875622.1|	-	0.0098	15.2	5.1	0.017	14.4	5.1	1.4	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
HTH_3	PF01381.22	gi|564289383|ref|YP_008875623.1|	-	6.7e-10	38.9	1.7	9.3e-10	38.4	1.7	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|564289383|ref|YP_008875623.1|	-	9.3e-08	32.3	0.1	1.5e-07	31.7	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|564289383|ref|YP_008875623.1|	-	7.5e-07	29.1	0.4	1.3e-06	28.4	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|564289383|ref|YP_008875623.1|	-	1.7e-05	24.6	0.4	2.7e-05	23.9	0.4	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
COPR5	PF15340.6	gi|564289383|ref|YP_008875623.1|	-	0.015	15.9	0.6	0.022	15.4	0.6	1.3	1	0	0	1	1	1	0	Cooperator	of	PRMT5	family
HTH_37	PF13744.6	gi|564289383|ref|YP_008875623.1|	-	0.016	15.1	0.1	0.029	14.3	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Pox_A12	PF04651.13	gi|564289383|ref|YP_008875623.1|	-	0.02	15.0	3.5	0.028	14.5	3.5	1.3	1	0	0	1	1	1	0	Poxvirus	A12	protein
HTH_38	PF13936.6	gi|564289383|ref|YP_008875623.1|	-	0.063	13.1	0.1	0.12	12.2	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DZR	PF12773.7	gi|564289383|ref|YP_008875623.1|	-	0.097	12.7	0.6	0.17	12.0	0.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
RAP1	PF07218.11	gi|564289383|ref|YP_008875623.1|	-	0.15	10.3	6.4	0.17	10.1	6.4	1.2	1	0	0	1	1	1	0	Rhoptry-associated	protein	1	(RAP-1)
SR-25	PF10500.9	gi|564289383|ref|YP_008875623.1|	-	0.27	10.8	21.6	0.21	11.1	20.6	1.4	1	1	0	1	1	1	0	Nuclear	RNA-splicing-associated	protein
SelK_SelG	PF10961.8	gi|564289383|ref|YP_008875623.1|	-	0.75	10.5	5.6	0.28	11.8	2.7	1.8	2	0	0	2	2	2	0	Selenoprotein	SelK_SelG
Macoilin	PF09726.9	gi|564289383|ref|YP_008875623.1|	-	1.2	7.6	6.2	1.3	7.5	6.2	1.1	1	0	0	1	1	1	0	Macoilin	family
PI3K_1B_p101	PF10486.9	gi|564289383|ref|YP_008875623.1|	-	4.4	5.0	12.4	10	3.8	12.2	1.5	1	1	1	2	2	2	0	Phosphoinositide	3-kinase	gamma	adapter	protein	p101	subunit
Apt1	PF10351.9	gi|564289383|ref|YP_008875623.1|	-	6.4	5.5	9.1	7.9	5.2	9.1	1.2	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289384|ref|YP_008875624.1|	-	7.3e-20	70.7	0.2	1.4e-19	69.7	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|564289384|ref|YP_008875624.1|	-	4.4e-19	68.9	1.2	2e-18	66.8	0.2	2.1	2	0	0	2	2	2	1	Probable	transposase
HTH_OrfB_IS605	PF12323.8	gi|564289384|ref|YP_008875624.1|	-	0.00073	19.0	0.0	0.0013	18.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HypA	PF01155.19	gi|564289384|ref|YP_008875624.1|	-	0.11	12.5	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
CDP-OH_P_transf	PF01066.21	gi|564289385|ref|YP_008875625.1|	-	9.6e-09	35.9	3.9	2.5e-08	34.6	0.5	2.5	2	0	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
DUF1118	PF06549.12	gi|564289385|ref|YP_008875625.1|	-	0.032	14.6	2.4	0.058	13.7	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1118)
DUF4051	PF13260.6	gi|564289385|ref|YP_008875625.1|	-	0.058	13.1	0.7	0.12	12.1	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4051)
AAA_18	PF13238.6	gi|564289386|ref|YP_008875626.1|	-	2.6e-22	79.7	0.1	3.7e-22	79.3	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.6	gi|564289386|ref|YP_008875626.1|	-	1.4e-07	32.0	0.5	0.0022	18.4	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|564289386|ref|YP_008875626.1|	-	2.7e-06	27.6	0.7	0.054	13.7	0.1	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_28	PF13521.6	gi|564289386|ref|YP_008875626.1|	-	2e-05	24.9	2.5	0.00051	20.3	0.2	2.2	1	1	1	2	2	2	1	AAA	domain
dNK	PF01712.19	gi|564289386|ref|YP_008875626.1|	-	4e-05	23.6	0.1	0.091	12.6	0.0	2.1	1	1	1	2	2	2	2	Deoxynucleoside	kinase
AAA_22	PF13401.6	gi|564289386|ref|YP_008875626.1|	-	0.0027	18.0	0.0	0.0036	17.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.22	gi|564289386|ref|YP_008875626.1|	-	0.0082	16.3	0.1	0.65	10.1	0.0	2.2	2	0	0	2	2	2	1	Adenylate	kinase
CoaE	PF01121.20	gi|564289386|ref|YP_008875626.1|	-	0.0083	15.8	0.0	3.2	7.4	0.0	2.2	2	0	0	2	2	2	2	Dephospho-CoA	kinase
MeaB	PF03308.16	gi|564289386|ref|YP_008875626.1|	-	0.013	14.5	0.1	0.021	13.8	0.1	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NTPase_1	PF03266.15	gi|564289386|ref|YP_008875626.1|	-	0.014	15.3	0.8	0.045	13.7	0.4	1.9	1	1	0	2	2	2	0	NTPase
AAA_24	PF13479.6	gi|564289386|ref|YP_008875626.1|	-	0.03	14.1	0.0	0.039	13.7	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|564289386|ref|YP_008875626.1|	-	0.04	13.6	0.6	5.4	6.6	0.1	2.2	1	1	1	2	2	2	0	Thymidylate	kinase
AAA_16	PF13191.6	gi|564289386|ref|YP_008875626.1|	-	0.077	13.4	1.0	0.33	11.3	1.0	2.0	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564289386|ref|YP_008875626.1|	-	0.16	12.4	0.8	0.31	11.5	0.8	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
KTI12	PF08433.10	gi|564289386|ref|YP_008875626.1|	-	0.17	11.3	0.0	0.23	10.8	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
Aminotran_1_2	PF00155.21	gi|564289387|ref|YP_008875627.1|	-	1.6e-62	211.8	0.0	1.8e-62	211.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.13	gi|564289387|ref|YP_008875627.1|	-	4e-05	22.7	0.0	6e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Allinase
CheX	PF13690.6	gi|564289388|ref|YP_008875628.1|	-	1.6e-09	37.8	0.1	4.4e-09	36.4	0.1	1.7	2	0	0	2	2	2	1	Chemotaxis	phosphatase	CheX
CheC	PF04509.12	gi|564289388|ref|YP_008875628.1|	-	7.3e-09	35.4	2.3	1.2e-08	34.7	0.5	2.3	3	0	0	3	3	3	1	CheC-like	family
CopD	PF05425.13	gi|564289389|ref|YP_008875629.1|	-	0.00023	21.5	4.4	0.00023	21.5	4.4	2.0	2	0	0	2	2	2	1	Copper	resistance	protein	D
DUF3742	PF12553.8	gi|564289389|ref|YP_008875629.1|	-	0.13	12.3	1.8	0.24	11.5	0.5	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3742)
YdjM	PF04307.14	gi|564289390|ref|YP_008875630.1|	-	1.5e-08	34.2	6.7	2.4e-08	33.5	6.7	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
GMC_oxred_C	PF05199.13	gi|564289391|ref|YP_008875631.1|	-	9e-23	81.4	0.8	3.2e-22	79.6	0.8	1.9	1	1	0	1	1	1	1	GMC	oxidoreductase
GMC_oxred_N	PF00732.19	gi|564289391|ref|YP_008875631.1|	-	4.3e-18	65.7	0.0	1e-17	64.5	0.0	1.6	1	1	0	1	1	1	1	GMC	oxidoreductase
DAO	PF01266.24	gi|564289391|ref|YP_008875631.1|	-	6.7e-09	35.8	5.2	8.1e-08	32.2	4.2	2.5	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|564289391|ref|YP_008875631.1|	-	1.1e-08	34.6	1.4	0.0015	17.7	0.3	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564289391|ref|YP_008875631.1|	-	1.3e-06	28.0	0.6	5.9e-05	22.5	0.0	2.1	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564289391|ref|YP_008875631.1|	-	8e-06	26.0	0.0	2.1e-05	24.7	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|564289391|ref|YP_008875631.1|	-	1e-05	24.4	0.1	0.00012	20.9	0.1	2.0	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|564289391|ref|YP_008875631.1|	-	0.00024	20.4	0.0	0.0019	17.5	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564289391|ref|YP_008875631.1|	-	0.00035	19.7	0.1	0.00055	19.1	0.1	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
FAD_oxidored	PF12831.7	gi|564289391|ref|YP_008875631.1|	-	0.011	15.1	1.2	0.018	14.4	1.2	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Fer4_7	PF12838.7	gi|564289391|ref|YP_008875631.1|	-	0.022	15.3	0.9	0.044	14.4	0.9	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Pyr_redox	PF00070.27	gi|564289391|ref|YP_008875631.1|	-	0.027	15.0	0.0	0.61	10.7	0.0	2.7	3	0	0	3	3	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564289391|ref|YP_008875631.1|	-	0.032	13.9	0.0	0.079	12.6	0.0	1.7	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_3	PF13738.6	gi|564289391|ref|YP_008875631.1|	-	0.047	12.9	0.1	0.1	11.8	0.0	1.5	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|564289391|ref|YP_008875631.1|	-	0.067	12.4	0.1	0.12	11.6	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
3HCDH_N	PF02737.18	gi|564289391|ref|YP_008875631.1|	-	0.12	12.2	0.0	0.19	11.6	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|564289391|ref|YP_008875631.1|	-	0.13	12.3	0.0	0.36	10.9	0.0	1.6	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
GIDA	PF01134.22	gi|564289391|ref|YP_008875631.1|	-	0.14	11.2	0.0	0.23	10.5	0.0	1.3	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Fer4_3	PF12798.7	gi|564289391|ref|YP_008875631.1|	-	0.86	10.7	3.1	2.2	9.4	3.1	1.7	1	0	0	1	1	1	0	4Fe-4S	binding	domain
MttA_Hcf106	PF02416.16	gi|564289392|ref|YP_008875632.1|	-	7.4e-15	54.0	0.0	8.2e-15	53.9	0.0	1.1	1	0	0	1	1	1	1	mttA/Hcf106	family
DUF4148	PF13663.6	gi|564289392|ref|YP_008875632.1|	-	0.019	15.1	0.0	0.026	14.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4148)
MAP17	PF15807.5	gi|564289392|ref|YP_008875632.1|	-	0.076	13.2	0.0	0.093	13.0	0.0	1.1	1	0	0	1	1	1	0	Membrane-associated	protein	117	kDa,	PDZK1-interacting	protein	1
AhpC-TSA	PF00578.21	gi|564289394|ref|YP_008875634.1|	-	1.6e-32	112.0	0.0	1.9e-32	111.8	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564289394|ref|YP_008875634.1|	-	2.8e-23	82.3	0.0	3.2e-23	82.1	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.6	gi|564289394|ref|YP_008875634.1|	-	0.00019	21.5	0.0	0.0036	17.4	0.0	2.0	2	0	0	2	2	2	1	AhpC/TSA	antioxidant	enzyme
DUF899	PF05988.12	gi|564289394|ref|YP_008875634.1|	-	0.0011	18.5	0.0	0.0015	18.1	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
HD	PF01966.22	gi|564289395|ref|YP_008875635.1|	-	3.8e-08	33.6	3.3	4.6e-08	33.3	2.3	1.6	2	0	0	2	2	2	1	HD	domain
zinc_ribbon_2	PF13240.6	gi|564289397|ref|YP_008875637.1|	-	0.00016	21.3	3.3	0.00016	21.3	3.3	1.9	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.19	gi|564289397|ref|YP_008875637.1|	-	0.00019	21.4	0.4	0.00026	21.0	0.4	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|564289397|ref|YP_008875637.1|	-	0.00038	20.4	13.0	0.008	16.2	2.9	1.3	1	1	1	2	2	2	2	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|564289397|ref|YP_008875637.1|	-	0.00048	20.8	0.8	0.00057	20.6	0.8	1.3	1	1	0	1	1	1	1	zinc-ribbon	family
zf-ribbon_3	PF13248.6	gi|564289397|ref|YP_008875637.1|	-	0.00052	19.3	2.3	0.00052	19.3	2.3	1.7	2	0	0	2	2	2	1	zinc-ribbon	domain
Ribosomal_L37e	PF01907.19	gi|564289397|ref|YP_008875637.1|	-	0.0022	18.1	3.3	0.004	17.3	2.0	2.0	2	0	0	2	2	2	1	Ribosomal	protein	L37e
zf-C3HC4_3	PF13920.6	gi|564289397|ref|YP_008875637.1|	-	0.019	14.8	0.5	0.029	14.2	0.5	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Prok-RING_4	PF14447.6	gi|564289397|ref|YP_008875637.1|	-	0.02	14.7	0.9	0.04	13.8	0.6	1.6	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
Zn_Tnp_IS1595	PF12760.7	gi|564289397|ref|YP_008875637.1|	-	0.021	14.8	1.4	5.6	7.0	0.3	2.3	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-RING_2	PF13639.6	gi|564289397|ref|YP_008875637.1|	-	0.027	14.8	1.9	0.48	10.8	0.6	2.1	2	0	0	2	2	2	0	Ring	finger	domain
zf-C3HC4_2	PF13923.6	gi|564289397|ref|YP_008875637.1|	-	0.028	14.3	2.7	0.038	13.8	0.4	2.0	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-RING_5	PF14634.6	gi|564289397|ref|YP_008875637.1|	-	0.045	13.7	2.1	0.086	12.8	0.7	1.9	2	0	0	2	2	2	0	zinc-RING	finger	domain
RNA_POL_M_15KD	PF02150.16	gi|564289397|ref|YP_008875637.1|	-	0.051	13.5	0.6	0.42	10.5	0.0	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Zn-ribbon_8	PF09723.10	gi|564289397|ref|YP_008875637.1|	-	0.089	12.9	4.0	0.089	12.9	4.0	2.1	2	1	0	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289397|ref|YP_008875637.1|	-	0.18	11.7	7.5	13	5.8	0.5	3.0	2	1	1	3	3	3	0	Putative	transposase	DNA-binding	domain
Prok-RING_1	PF14446.6	gi|564289397|ref|YP_008875637.1|	-	0.23	11.4	2.7	0.48	10.4	0.8	2.0	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
DUF2116	PF09889.9	gi|564289397|ref|YP_008875637.1|	-	0.26	11.3	1.5	0.42	10.6	1.5	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
zf-FPG_IleRS	PF06827.14	gi|564289397|ref|YP_008875637.1|	-	0.31	10.9	5.6	3.3	7.7	5.8	2.3	1	1	1	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
TF_Zn_Ribbon	PF08271.12	gi|564289397|ref|YP_008875637.1|	-	0.35	10.4	3.6	1.8	8.1	3.8	2.0	1	1	1	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_9	PF14369.6	gi|564289397|ref|YP_008875637.1|	-	0.36	11.1	3.1	0.94	9.8	3.1	1.9	1	1	0	1	1	1	0	zinc-ribbon
zf-RRN7	PF11781.8	gi|564289397|ref|YP_008875637.1|	-	0.71	9.6	5.1	5.7	6.7	1.0	2.3	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DUF35_N	PF12172.8	gi|564289397|ref|YP_008875637.1|	-	0.73	9.8	8.3	0.4	10.6	3.5	2.7	2	1	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
UPF0547	PF10571.9	gi|564289397|ref|YP_008875637.1|	-	2.7	8.1	9.5	0.27	11.4	2.7	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
YhfH	PF14149.6	gi|564289397|ref|YP_008875637.1|	-	5.2	7.1	6.0	15	5.7	0.2	2.8	2	1	1	3	3	3	0	YhfH-like	protein
tRNA_SAD	PF07973.14	gi|564289398|ref|YP_008875638.1|	-	1.4e-13	50.6	0.2	2.4e-13	49.9	0.2	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DHHA1	PF02272.19	gi|564289398|ref|YP_008875638.1|	-	3e-13	50.4	1.4	5.8e-13	49.5	1.1	1.7	2	0	0	2	2	2	1	DHHA1	domain
tRNA-synt_2c	PF01411.19	gi|564289398|ref|YP_008875638.1|	-	1e-10	40.8	0.1	1.5e-10	40.2	0.1	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
CorA	PF01544.18	gi|564289398|ref|YP_008875638.1|	-	0.073	12.4	0.1	0.11	11.7	0.1	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
EamA	PF00892.20	gi|564289399|ref|YP_008875639.1|	-	4.3e-39	133.8	29.3	7.6e-20	71.5	11.6	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
SurE	PF01975.17	gi|564289400|ref|YP_008875640.1|	-	1.7e-44	152.0	0.4	2.1e-44	151.7	0.4	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
Methyltransf_12	PF08242.12	gi|564289401|ref|YP_008875641.1|	-	1.3e-07	32.2	0.1	4.1e-07	30.7	0.1	1.9	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564289401|ref|YP_008875641.1|	-	2e-05	24.5	0.0	3.3e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Rsm22	PF09243.10	gi|564289401|ref|YP_008875641.1|	-	0.0028	17.0	0.0	0.0053	16.1	0.0	1.5	1	1	0	1	1	1	1	Mitochondrial	small	ribosomal	subunit	Rsm22
PDH	PF02153.17	gi|564289402|ref|YP_008875642.1|	-	5.5e-16	58.3	1.2	5.5e-15	55.1	1.2	1.9	1	1	0	1	1	1	1	Prephenate	dehydrogenase
F420_oxidored	PF03807.17	gi|564289402|ref|YP_008875642.1|	-	8.1e-06	26.3	3.9	9.8e-06	26.1	0.7	2.2	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.22	gi|564289402|ref|YP_008875642.1|	-	0.00025	21.9	0.5	0.00025	21.9	0.5	2.1	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_2	PF03446.15	gi|564289402|ref|YP_008875642.1|	-	0.00041	20.5	0.5	0.00041	20.5	0.5	2.0	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|564289402|ref|YP_008875642.1|	-	0.0036	17.6	1.6	0.038	14.3	0.2	2.4	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
3HCDH_N	PF02737.18	gi|564289402|ref|YP_008875642.1|	-	0.011	15.7	0.7	0.011	15.7	0.7	2.4	2	1	1	3	3	3	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564289402|ref|YP_008875642.1|	-	0.017	14.5	0.1	0.033	13.5	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|564289402|ref|YP_008875642.1|	-	0.042	13.5	0.3	0.3	10.7	0.3	2.1	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
IlvN	PF07991.12	gi|564289402|ref|YP_008875642.1|	-	0.12	12.0	0.3	0.12	12.0	0.3	2.0	2	1	1	3	3	3	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
CoA_binding	PF02629.19	gi|564289402|ref|YP_008875642.1|	-	2.9	8.6	8.1	0.36	11.6	1.1	2.8	2	1	1	3	3	3	0	CoA	binding	domain
FAA_hydrolase	PF01557.18	gi|564289403|ref|YP_008875643.1|	-	1.3e-66	224.4	0.0	1.7e-66	224.0	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|564289403|ref|YP_008875643.1|	-	0.0025	18.7	0.2	0.0068	17.3	0.2	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2437)
Copper-bind	PF00127.20	gi|564289404|ref|YP_008875644.1|	-	1.5e-22	79.9	0.0	9.6e-13	48.4	0.0	3.0	2	2	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
HTH_20	PF12840.7	gi|564289405|ref|YP_008875645.1|	-	2.9e-13	49.7	0.3	4e-13	49.2	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564289405|ref|YP_008875645.1|	-	0.00027	20.7	0.0	0.00038	20.3	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564289405|ref|YP_008875645.1|	-	0.0028	17.4	0.0	0.0045	16.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564289405|ref|YP_008875645.1|	-	0.0036	17.1	0.0	0.0056	16.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Rio2_N	PF09202.11	gi|564289405|ref|YP_008875645.1|	-	0.17	12.1	0.0	0.24	11.6	0.0	1.2	1	0	0	1	1	1	0	Rio2,	N-terminal
Copper-bind	PF00127.20	gi|564289407|ref|YP_008875647.1|	-	3.7e-17	62.6	0.1	1.2e-16	60.9	0.1	1.9	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|564289407|ref|YP_008875647.1|	-	6.9e-06	25.7	1.9	6.9e-06	25.7	1.9	2.3	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DPRP	PF04244.13	gi|564289408|ref|YP_008875648.1|	-	5.7e-57	193.1	0.0	9e-57	192.5	0.0	1.3	1	0	0	1	1	1	1	Deoxyribodipyrimidine	photo-lyase-related	protein
ABC1	PF03109.16	gi|564289409|ref|YP_008875649.1|	-	4e-26	91.5	0.0	1e-25	90.2	0.0	1.7	1	0	0	1	1	1	1	ABC1	family
APH	PF01636.23	gi|564289409|ref|YP_008875649.1|	-	0.00021	21.3	0.5	0.0012	18.8	0.5	2.4	1	1	0	1	1	1	1	Phosphotransferase	enzyme	family
Gram_pos_anchor	PF00746.21	gi|564289409|ref|YP_008875649.1|	-	0.27	11.2	1.2	0.55	10.2	1.2	1.4	1	0	0	1	1	1	0	LPXTG	cell	wall	anchor	motif
E1-E2_ATPase	PF00122.20	gi|564289410|ref|YP_008875650.1|	-	2.9e-49	167.0	2.4	7.2e-49	165.8	2.4	1.7	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564289410|ref|YP_008875650.1|	-	1.3e-44	153.1	9.0	1.3e-44	153.0	7.2	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564289410|ref|YP_008875650.1|	-	8.2e-28	96.7	0.3	4.2e-15	56.0	0.0	3.0	2	0	0	2	2	2	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564289410|ref|YP_008875650.1|	-	4.5e-06	26.6	0.7	0.0048	16.7	1.2	2.5	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564289410|ref|YP_008875650.1|	-	0.0025	18.2	0.6	0.016	15.6	0.6	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
DNAPolymera_Pol	PF11590.8	gi|564289410|ref|YP_008875650.1|	-	0.14	12.1	0.5	1.5	8.8	0.5	2.7	1	1	0	1	1	1	0	DNA	polymerase	catalytic	subunit	Pol
HTH_24	PF13412.6	gi|564289411|ref|YP_008875651.1|	-	7.9e-16	57.4	0.1	1.3e-15	56.6	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564289411|ref|YP_008875651.1|	-	9.1e-15	54.2	3.3	9.1e-15	54.2	3.3	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564289411|ref|YP_008875651.1|	-	8.4e-08	32.0	1.3	1.4e-06	28.1	0.0	2.5	3	0	0	3	3	3	1	MarR	family
HTH_20	PF12840.7	gi|564289411|ref|YP_008875651.1|	-	1.1e-05	25.3	0.1	2.8e-05	24.1	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|564289411|ref|YP_008875651.1|	-	2.3e-05	24.2	0.0	3.5e-05	23.6	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564289411|ref|YP_008875651.1|	-	5.7e-05	22.9	0.0	0.00012	21.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564289411|ref|YP_008875651.1|	-	7.6e-05	22.5	0.0	0.00026	20.8	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Ta0938	PF11494.8	gi|564289411|ref|YP_008875651.1|	-	0.00012	22.3	0.7	0.00019	21.6	0.7	1.3	1	0	0	1	1	1	1	Ta0938
HTH_27	PF13463.6	gi|564289411|ref|YP_008875651.1|	-	0.00028	21.3	0.1	0.0012	19.2	0.0	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.6	gi|564289411|ref|YP_008875651.1|	-	0.00077	18.8	0.2	0.004	16.6	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
YHS	PF04945.13	gi|564289411|ref|YP_008875651.1|	-	0.0013	18.8	2.2	0.0023	18.0	2.2	1.3	1	0	0	1	1	1	1	YHS	domain
HTH_IclR	PF09339.10	gi|564289411|ref|YP_008875651.1|	-	0.0014	18.4	0.0	0.0038	17.0	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|564289411|ref|YP_008875651.1|	-	0.0033	17.6	0.0	0.0096	16.1	0.0	1.7	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|564289411|ref|YP_008875651.1|	-	0.009	15.8	0.0	0.026	14.3	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
Arc_trans_TRASH	PF08394.10	gi|564289411|ref|YP_008875651.1|	-	0.047	14.0	2.8	0.08	13.3	2.8	1.4	1	0	0	1	1	1	0	Archaeal	TRASH	domain
Sigma70_r4	PF04545.16	gi|564289411|ref|YP_008875651.1|	-	0.061	12.8	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
ATPase-cat_bd	PF12156.8	gi|564289411|ref|YP_008875651.1|	-	0.095	13.5	2.4	0.18	12.6	2.4	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HTH_28	PF13518.6	gi|564289411|ref|YP_008875651.1|	-	0.13	12.4	0.0	0.43	10.7	0.0	1.9	2	0	0	2	2	1	0	Helix-turn-helix	domain
Shisa	PF13908.6	gi|564289411|ref|YP_008875651.1|	-	0.4	10.9	4.4	0.57	10.4	4.4	1.2	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
ZnuA	PF01297.17	gi|564289412|ref|YP_008875652.1|	-	1.1e-41	142.9	0.0	1.4e-41	142.6	0.0	1.0	1	0	0	1	1	1	1	Zinc-uptake	complex	component	A	periplasmic
ABC_tran	PF00005.27	gi|564289413|ref|YP_008875653.1|	-	9.7e-30	103.9	0.0	1.6e-29	103.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289413|ref|YP_008875653.1|	-	3.1e-11	43.6	0.3	3.1e-05	24.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564289413|ref|YP_008875653.1|	-	7.2e-05	22.3	0.0	0.0091	15.5	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564289413|ref|YP_008875653.1|	-	0.00013	21.6	0.0	0.00031	20.4	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564289413|ref|YP_008875653.1|	-	0.0004	20.8	0.3	0.001	19.5	0.3	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.6	gi|564289413|ref|YP_008875653.1|	-	0.00086	19.1	0.0	0.0012	18.7	0.0	1.1	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564289413|ref|YP_008875653.1|	-	0.0011	18.7	0.7	0.0052	16.5	0.7	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564289413|ref|YP_008875653.1|	-	0.0038	17.5	0.1	0.014	15.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|564289413|ref|YP_008875653.1|	-	0.0059	16.7	0.0	0.011	15.9	0.0	1.6	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_23	PF13476.6	gi|564289413|ref|YP_008875653.1|	-	0.0099	16.4	0.0	0.016	15.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|564289413|ref|YP_008875653.1|	-	0.03	14.3	0.0	0.053	13.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|564289413|ref|YP_008875653.1|	-	0.032	14.1	0.0	0.054	13.4	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_33	PF13671.6	gi|564289413|ref|YP_008875653.1|	-	0.033	14.4	0.1	0.061	13.5	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.17	gi|564289413|ref|YP_008875653.1|	-	0.033	14.3	0.0	0.06	13.4	0.0	1.4	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
Mg_chelatase	PF01078.21	gi|564289413|ref|YP_008875653.1|	-	0.034	13.5	0.0	0.17	11.2	0.0	1.9	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
SbcCD_C	PF13558.6	gi|564289413|ref|YP_008875653.1|	-	0.036	14.3	0.2	0.91	9.8	0.2	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ABC_ATPase	PF09818.9	gi|564289413|ref|YP_008875653.1|	-	0.051	12.4	0.1	9.6	4.9	0.0	2.9	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
NTPase_1	PF03266.15	gi|564289413|ref|YP_008875653.1|	-	0.053	13.4	0.0	0.18	11.7	0.0	1.8	2	0	0	2	2	2	0	NTPase
AAA_25	PF13481.6	gi|564289413|ref|YP_008875653.1|	-	0.059	12.9	0.3	0.19	11.3	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|564289413|ref|YP_008875653.1|	-	0.12	11.9	0.0	0.18	11.3	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
FtsK_SpoIIIE	PF01580.18	gi|564289413|ref|YP_008875653.1|	-	0.12	11.7	0.0	0.17	11.2	0.0	1.2	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_5	PF07728.14	gi|564289413|ref|YP_008875653.1|	-	0.12	12.4	0.0	0.27	11.2	0.0	1.6	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|564289413|ref|YP_008875653.1|	-	0.22	11.9	0.0	0.47	10.9	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
Spore_IV_A	PF09547.10	gi|564289413|ref|YP_008875653.1|	-	0.24	10.3	0.0	0.35	9.8	0.0	1.1	1	0	0	1	1	1	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
ABC-3	PF00950.17	gi|564289414|ref|YP_008875654.1|	-	4e-60	203.5	40.7	4.7e-60	203.3	40.7	1.0	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.18	gi|564289414|ref|YP_008875654.1|	-	8.9e-05	21.6	38.6	8.9e-05	21.6	38.6	1.6	1	1	0	1	1	1	1	FecCD	transport	family
DUF2407_C	PF13373.6	gi|564289414|ref|YP_008875654.1|	-	0.11	12.6	0.3	0.34	11.1	0.3	1.8	1	0	0	1	1	1	0	DUF2407	C-terminal	domain
LPAM_1	PF08139.12	gi|564289415|ref|YP_008875655.1|	-	0.0015	18.9	0.5	0.0028	18.1	0.5	1.5	1	0	0	1	1	1	1	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
DUF4179	PF13786.6	gi|564289415|ref|YP_008875655.1|	-	0.073	13.6	0.1	0.1	13.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4179)
UPF0016	PF01169.19	gi|564289416|ref|YP_008875656.1|	-	4.9e-26	90.8	19.4	4e-17	62.3	3.8	3.0	2	1	1	3	3	3	2	Uncharacterized	protein	family	UPF0016
Fe_dep_repr_C	PF02742.15	gi|564289417|ref|YP_008875657.1|	-	3.4e-30	103.9	1.6	6.1e-30	103.1	1.6	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.19	gi|564289417|ref|YP_008875657.1|	-	3e-20	72.1	0.3	1.3e-19	70.2	0.1	2.1	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.14	gi|564289417|ref|YP_008875657.1|	-	5.4e-16	58.6	0.4	1.7e-15	57.0	0.1	2.0	2	0	0	2	2	2	1	FeoA	domain
MarR_2	PF12802.7	gi|564289417|ref|YP_008875657.1|	-	2.4e-08	33.7	0.0	6e-08	32.5	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564289417|ref|YP_008875657.1|	-	2.1e-07	30.8	0.0	5e-07	29.6	0.0	1.7	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|564289417|ref|YP_008875657.1|	-	2.3e-05	24.2	0.0	5.6e-05	22.9	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|564289417|ref|YP_008875657.1|	-	5.1e-05	23.7	0.1	0.00014	22.3	0.0	1.8	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|564289417|ref|YP_008875657.1|	-	0.00012	21.9	0.0	0.00032	20.6	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564289417|ref|YP_008875657.1|	-	0.00017	21.1	0.0	0.00069	19.1	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.9	gi|564289417|ref|YP_008875657.1|	-	0.0018	18.3	0.0	0.0038	17.3	0.0	1.6	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_IclR	PF09339.10	gi|564289417|ref|YP_008875657.1|	-	0.0018	18.0	0.1	0.016	15.0	0.0	2.4	2	1	1	3	3	3	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|564289417|ref|YP_008875657.1|	-	0.0052	17.1	0.0	0.012	16.0	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
GntR	PF00392.21	gi|564289417|ref|YP_008875657.1|	-	0.0055	16.3	0.0	0.044	13.4	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Topoisom_bac	PF01131.20	gi|564289417|ref|YP_008875657.1|	-	0.0072	15.4	0.1	0.011	14.8	0.1	1.2	1	0	0	1	1	1	1	DNA	topoisomerase
HTH_20	PF12840.7	gi|564289417|ref|YP_008875657.1|	-	0.013	15.5	0.0	0.034	14.2	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_13	PF11972.8	gi|564289417|ref|YP_008875657.1|	-	0.097	12.8	0.0	0.19	11.9	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
DUF4423	PF14394.6	gi|564289417|ref|YP_008875657.1|	-	0.2	11.4	0.0	0.31	10.7	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
BatA	PF07584.11	gi|564289418|ref|YP_008875658.1|	-	0.032	14.6	0.5	0.036	14.4	0.5	1.1	1	0	0	1	1	1	0	Aerotolerance	regulator	N-terminal
FixS	PF03597.15	gi|564289418|ref|YP_008875658.1|	-	0.042	13.6	0.6	0.05	13.3	0.6	1.2	1	0	0	1	1	1	0	Cytochrome	oxidase	maturation	protein	cbb3-type
Papilloma_E5A	PF05776.12	gi|564289418|ref|YP_008875658.1|	-	0.078	13.4	0.0	0.078	13.4	0.0	1.1	1	0	0	1	1	1	0	Papillomavirus	E5A	protein
UPF0767	PF15990.5	gi|564289418|ref|YP_008875658.1|	-	0.15	12.2	0.0	0.16	12.1	0.0	1.1	1	0	0	1	1	1	0	UPF0767	family
MTH865	PF07747.11	gi|564289419|ref|YP_008875659.1|	-	1.4e-28	98.4	0.2	1.7e-28	98.2	0.2	1.1	1	0	0	1	1	1	1	MTH865-like	family
DUF2909	PF11137.8	gi|564289420|ref|YP_008875660.1|	-	0.054	13.4	0.1	0.086	12.8	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2909)
DUF3989	PF13150.6	gi|564289420|ref|YP_008875660.1|	-	0.081	12.7	0.0	0.091	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3989)
zinc_ribbon_13	PF09855.9	gi|564289421|ref|YP_008875661.1|	-	4.8e-27	93.9	0.4	5.5e-27	93.7	0.4	1.1	1	0	0	1	1	1	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-ribbon_3	PF13248.6	gi|564289421|ref|YP_008875661.1|	-	0.0013	18.1	3.8	0.43	10.1	0.6	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.7	gi|564289421|ref|YP_008875661.1|	-	0.0022	17.9	1.5	1.1	9.3	0.1	2.2	1	1	1	2	2	2	2	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|564289421|ref|YP_008875661.1|	-	0.0041	17.4	0.5	0.007	16.7	0.5	1.4	1	1	0	1	1	1	1	Restriction	alleviation	protein	Lar
zinc_ribbon_2	PF13240.6	gi|564289421|ref|YP_008875661.1|	-	0.0051	16.5	3.2	1.2	9.0	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564289421|ref|YP_008875661.1|	-	0.007	15.9	0.9	1.6	8.3	0.2	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
DUF2387	PF09526.10	gi|564289421|ref|YP_008875661.1|	-	0.0084	16.2	0.0	0.44	10.7	0.0	2.0	2	0	0	2	2	2	1	Probable	metal-binding	protein	(DUF2387)
DZR	PF12773.7	gi|564289421|ref|YP_008875661.1|	-	0.016	15.2	0.2	0.027	14.5	0.2	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.13	gi|564289421|ref|YP_008875661.1|	-	0.021	14.5	1.1	0.57	9.9	0.0	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.10	gi|564289421|ref|YP_008875661.1|	-	0.029	14.5	0.4	2.1	8.6	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|564289421|ref|YP_008875661.1|	-	0.038	14.0	0.3	2.2	8.4	0.0	2.1	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
zf-C2H2_3	PF13878.6	gi|564289421|ref|YP_008875661.1|	-	0.041	13.7	1.5	1.5	8.7	0.2	2.2	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
CpXC	PF14353.6	gi|564289421|ref|YP_008875661.1|	-	0.05	13.7	2.4	0.32	11.0	2.4	1.9	1	1	1	2	2	2	0	CpXC	protein
zf-TFIIB	PF13453.6	gi|564289421|ref|YP_008875661.1|	-	0.066	12.6	0.6	0.35	10.2	0.6	1.9	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
OrfB_Zn_ribbon	PF07282.11	gi|564289421|ref|YP_008875661.1|	-	0.07	13.1	1.8	0.59	10.1	1.8	2.0	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Spt4	PF06093.13	gi|564289421|ref|YP_008875661.1|	-	0.091	12.9	0.1	2.9	8.1	0.0	2.1	2	0	0	2	2	2	0	Spt4/RpoE2	zinc	finger
DUF2225	PF09986.9	gi|564289421|ref|YP_008875661.1|	-	0.18	11.5	1.1	0.36	10.5	1.2	1.6	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
TFIIS_C	PF01096.18	gi|564289421|ref|YP_008875661.1|	-	0.2	11.6	4.0	6.8	6.6	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.6	gi|564289421|ref|YP_008875661.1|	-	0.28	11.1	4.4	5.1	7.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.9	gi|564289421|ref|YP_008875661.1|	-	0.37	10.9	2.8	5.9	7.1	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DJ-1_PfpI	PF01965.24	gi|564289422|ref|YP_008875662.1|	-	4.8e-52	176.1	0.0	5.5e-52	175.9	0.0	1.0	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.28	gi|564289422|ref|YP_008875662.1|	-	0.0028	17.5	0.0	0.0043	16.8	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.14	gi|564289422|ref|YP_008875662.1|	-	0.0067	16.0	0.0	0.0093	15.6	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
ThiJ_like	PF17124.5	gi|564289422|ref|YP_008875662.1|	-	0.0074	16.0	0.0	0.039	13.7	0.0	1.9	1	1	1	2	2	2	1	ThiJ/PfpI	family-like
GATase_5	PF13507.6	gi|564289422|ref|YP_008875662.1|	-	0.04	13.0	0.0	0.061	12.4	0.0	1.4	1	0	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Catalase_C	PF18011.1	gi|564289422|ref|YP_008875662.1|	-	0.16	11.6	0.0	0.25	10.9	0.0	1.4	1	0	0	1	1	1	0	C-terminal	domain	found	in	long	catalases
Hydrolase_like	PF13242.6	gi|564289423|ref|YP_008875663.1|	-	9.3e-23	80.1	0.1	3e-22	78.5	0.0	1.9	3	0	0	3	3	3	1	HAD-hyrolase-like
Hydrolase_6	PF13344.6	gi|564289423|ref|YP_008875663.1|	-	1.3e-22	79.8	0.0	2.6e-22	78.8	0.0	1.5	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564289423|ref|YP_008875663.1|	-	7.4e-09	36.2	0.2	3.3e-08	34.1	0.2	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564289423|ref|YP_008875663.1|	-	4.2e-06	27.0	0.0	3.2e-05	24.1	0.0	2.2	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.10	gi|564289423|ref|YP_008875663.1|	-	0.00015	21.4	0.1	0.00047	19.8	0.1	1.8	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.12	gi|564289423|ref|YP_008875663.1|	-	0.006	16.3	0.0	0.1	12.3	0.0	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
Bse634I	PF07832.11	gi|564289423|ref|YP_008875663.1|	-	0.041	13.2	0.0	0.063	12.6	0.0	1.2	1	0	0	1	1	1	0	Cfr10I/Bse634I	restriction	endonuclease
Response_reg	PF00072.24	gi|564289424|ref|YP_008875664.1|	-	3.2e-23	82.0	0.0	6.7e-23	81.0	0.0	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|564289424|ref|YP_008875664.1|	-	1.5e-15	56.9	0.1	5.2e-15	55.2	0.1	2.0	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c	PF02518.26	gi|564289424|ref|YP_008875664.1|	-	2.8e-13	50.4	0.1	4.9e-13	49.6	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|564289424|ref|YP_008875664.1|	-	2.4e-12	47.1	0.1	8.9e-12	45.2	0.1	2.0	1	1	1	2	2	2	1	PAS	fold
PAS	PF00989.25	gi|564289424|ref|YP_008875664.1|	-	2e-07	31.0	0.0	6.4e-07	29.4	0.0	2.0	1	1	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|564289424|ref|YP_008875664.1|	-	6.8e-07	29.5	0.0	2.2e-06	27.9	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|564289424|ref|YP_008875664.1|	-	2.4e-06	27.4	0.0	3.9e-05	23.6	0.0	2.7	2	0	0	2	2	2	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|564289424|ref|YP_008875664.1|	-	0.00095	19.4	0.0	0.0038	17.5	0.0	2.1	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HATPase_c_5	PF14501.6	gi|564289424|ref|YP_008875664.1|	-	0.036	14.0	0.0	0.19	11.7	0.0	2.1	2	0	0	2	2	2	0	GHKL	domain
B12-binding	PF02310.19	gi|564289424|ref|YP_008875664.1|	-	0.057	13.5	0.0	0.91	9.6	0.0	2.4	2	0	0	2	2	2	0	B12	binding	domain
GLTP	PF08718.11	gi|564289424|ref|YP_008875664.1|	-	0.1	12.9	0.1	0.29	11.4	0.1	1.7	1	0	0	1	1	1	0	Glycolipid	transfer	protein	(GLTP)
DUF2071	PF09844.9	gi|564291310|ref|YP_008875665.1|	-	3.1e-31	108.7	0.0	3.5e-31	108.5	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
DUF2071	PF09844.9	gi|564289425|ref|YP_008875666.1|	-	4.4e-75	251.9	0.0	4.9e-75	251.8	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(COG2071)
ADC	PF06314.11	gi|564289425|ref|YP_008875666.1|	-	0.00013	21.7	0.0	0.00017	21.2	0.0	1.1	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
Macro	PF01661.21	gi|564289426|ref|YP_008875667.1|	-	2.9e-29	101.5	0.1	3.6e-29	101.2	0.1	1.1	1	0	0	1	1	1	1	Macro	domain
Cation_ATPase_C	PF00689.21	gi|564289427|ref|YP_008875668.1|	-	0.38	10.5	4.5	0.44	10.2	4.5	1.1	1	0	0	1	1	1	0	Cation	transporting	ATPase,	C-terminus
Aldo_ket_red	PF00248.21	gi|564289428|ref|YP_008875669.1|	-	1.5e-69	234.4	0.0	1.7e-69	234.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
B12-binding	PF02310.19	gi|564289428|ref|YP_008875669.1|	-	0.054	13.5	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	B12	binding	domain
NicO	PF03824.16	gi|564289429|ref|YP_008875670.1|	-	3.9e-08	33.0	7.1	3.9e-08	33.0	7.1	1.9	2	0	0	2	2	2	1	High-affinity	nickel-transport	protein
FUSC_2	PF13515.6	gi|564289429|ref|YP_008875670.1|	-	6.9	6.8	18.2	1.7	8.8	5.6	2.6	2	1	0	2	2	2	0	Fusaric	acid	resistance	protein-like
NikR_C	PF08753.11	gi|564289430|ref|YP_008875671.1|	-	3.9e-16	59.0	0.1	5.9e-16	58.4	0.1	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|564289430|ref|YP_008875671.1|	-	0.0014	18.4	0.5	0.0028	17.5	0.5	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
VapB_antitoxin	PF09957.9	gi|564289430|ref|YP_008875671.1|	-	0.011	15.7	0.0	0.026	14.4	0.0	1.7	1	1	0	1	1	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
ABC2_membrane_3	PF12698.7	gi|564289431|ref|YP_008875672.1|	-	1.3e-19	70.5	0.0	1.8e-19	70.1	0.0	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|564289431|ref|YP_008875672.1|	-	2.2e-11	43.6	4.4	2.9e-11	43.2	4.4	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|564289431|ref|YP_008875672.1|	-	1.1e-07	31.4	7.4	1.1e-07	31.4	7.4	2.1	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.6	gi|564289431|ref|YP_008875672.1|	-	0.0023	17.5	3.2	0.0023	17.5	3.2	1.6	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|564289431|ref|YP_008875672.1|	-	0.0037	17.2	8.2	0.0037	17.2	8.2	2.2	2	1	0	2	2	2	1	ABC-2	family	transporter	protein
DUF4131	PF13567.6	gi|564289431|ref|YP_008875672.1|	-	5.2	6.7	7.4	8.4	6.0	2.5	2.7	2	2	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
ABC2_membrane_5	PF13346.6	gi|564289432|ref|YP_008875673.1|	-	4.9	6.6	17.0	1.1	8.8	8.8	2.5	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|564289433|ref|YP_008875674.1|	-	6e-29	101.3	0.0	1.1e-28	100.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289433|ref|YP_008875674.1|	-	1.7e-12	47.8	0.0	1e-05	25.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SRP54	PF00448.22	gi|564289433|ref|YP_008875674.1|	-	0.00056	19.6	0.0	0.0014	18.3	0.0	1.6	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_23	PF13476.6	gi|564289433|ref|YP_008875674.1|	-	0.00086	19.9	0.5	0.0011	19.5	0.5	1.6	1	1	0	1	1	1	1	AAA	domain
DUF4162	PF13732.6	gi|564289433|ref|YP_008875674.1|	-	0.001	19.7	0.3	0.018	15.8	0.1	2.7	2	1	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|564289433|ref|YP_008875674.1|	-	0.0032	17.2	0.1	0.0077	16.0	0.1	1.8	2	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|564289433|ref|YP_008875674.1|	-	0.006	16.3	0.0	0.038	13.7	0.0	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564289433|ref|YP_008875674.1|	-	0.0078	15.9	0.1	0.015	15.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|564289433|ref|YP_008875674.1|	-	0.008	16.4	0.2	0.039	14.2	0.1	2.2	1	1	2	3	3	3	1	AAA	domain
AAA_24	PF13479.6	gi|564289433|ref|YP_008875674.1|	-	0.03	14.1	0.1	0.14	11.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|564289433|ref|YP_008875674.1|	-	0.084	12.5	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|564289433|ref|YP_008875674.1|	-	0.086	13.0	0.0	0.31	11.2	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564289433|ref|YP_008875674.1|	-	0.13	12.3	0.0	7.7	6.6	0.0	2.4	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_28	PF13521.6	gi|564289433|ref|YP_008875674.1|	-	0.17	12.1	2.0	0.28	11.4	0.1	2.2	3	0	0	3	3	3	0	AAA	domain
Rad17	PF03215.15	gi|564289433|ref|YP_008875674.1|	-	0.18	11.7	0.0	0.31	10.9	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA	PF00004.29	gi|564289433|ref|YP_008875674.1|	-	0.2	12.1	0.4	0.37	11.2	0.4	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Polyketide_cyc2	PF10604.9	gi|564289434|ref|YP_008875675.1|	-	1.1e-07	32.2	3.8	1.6e-07	31.7	3.8	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|564289434|ref|YP_008875675.1|	-	0.00024	21.3	0.3	0.00031	20.9	0.3	1.3	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|564289434|ref|YP_008875675.1|	-	0.069	13.4	0.7	0.28	11.4	0.6	2.0	2	0	0	2	2	2	0	Activator	of	Hsp90	ATPase	homolog	1-like	protein
DUF3931	PF13082.6	gi|564289434|ref|YP_008875675.1|	-	0.083	13.1	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3931)
HATPase_c	PF02518.26	gi|564289435|ref|YP_008875676.1|	-	6.2e-16	58.9	0.1	1.1e-15	58.2	0.1	1.3	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564289435|ref|YP_008875676.1|	-	5.3e-12	45.6	1.8	5.3e-12	45.6	1.8	2.8	3	1	1	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|564289435|ref|YP_008875676.1|	-	1.8e-06	27.7	0.6	4.5e-06	26.3	0.6	1.6	1	1	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_2	PF13581.6	gi|564289435|ref|YP_008875676.1|	-	7.5e-05	22.7	0.7	0.00045	20.2	0.1	2.2	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
DUF418	PF04235.12	gi|564289435|ref|YP_008875676.1|	-	0.0088	16.0	0.4	0.015	15.2	0.3	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF418)
SPOB_a	PF14689.6	gi|564289435|ref|YP_008875676.1|	-	0.011	15.4	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Phage_holin_3_6	PF07332.11	gi|564289435|ref|YP_008875676.1|	-	1.1	9.3	0.0	1.1	9.3	0.0	2.4	3	0	0	3	3	3	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
zf-C2H2_jaz	PF12171.8	gi|564289436|ref|YP_008875677.1|	-	0.0014	18.8	0.7	0.11	12.8	0.0	2.3	2	0	0	2	2	2	1	Zinc-finger	double-stranded	RNA-binding
zf-C2HC_2	PF13913.6	gi|564289436|ref|YP_008875677.1|	-	0.006	16.5	0.9	0.015	15.1	0.9	1.8	1	1	0	1	1	1	1	zinc-finger	of	a	C2HC-type
Zn_ribbon_recom	PF13408.6	gi|564289436|ref|YP_008875677.1|	-	0.013	16.0	0.2	0.013	16.0	0.2	1.9	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
HNH_5	PF14279.6	gi|564289436|ref|YP_008875677.1|	-	0.021	14.7	1.6	3.6	7.5	0.2	2.2	1	1	1	2	2	2	0	HNH	endonuclease
DZR	PF12773.7	gi|564289436|ref|YP_008875677.1|	-	0.032	14.2	5.7	0.19	11.7	5.9	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-C2H2_11	PF16622.5	gi|564289436|ref|YP_008875677.1|	-	0.042	13.6	1.4	1.6	8.6	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	C2H2-type
DNA_ligase_ZBD	PF03119.16	gi|564289436|ref|YP_008875677.1|	-	0.086	12.9	1.9	0.3	11.2	2.1	1.9	1	1	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C2H2	PF00096.26	gi|564289436|ref|YP_008875677.1|	-	0.14	12.6	9.7	0.62	10.6	1.1	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|564289436|ref|YP_008875677.1|	-	0.33	11.9	8.1	3.1	8.9	1.1	2.8	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-C2H2_6	PF13912.6	gi|564289436|ref|YP_008875677.1|	-	0.44	10.6	8.5	0.7	10.0	0.7	2.8	3	0	0	3	3	3	0	C2H2-type	zinc	finger
HypA	PF01155.19	gi|564289436|ref|YP_008875677.1|	-	0.5	10.4	5.3	0.44	10.6	1.1	2.0	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-H2C2_2	PF13465.6	gi|564289436|ref|YP_008875677.1|	-	0.66	10.5	5.3	7.1	7.2	0.2	3.1	3	0	0	3	3	3	0	Zinc-finger	double	domain
zinc_ribbon_10	PF10058.9	gi|564289436|ref|YP_008875677.1|	-	0.78	9.5	5.4	1.4	8.7	1.9	2.3	1	1	1	2	2	2	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zf-LITAF-like	PF10601.9	gi|564289436|ref|YP_008875677.1|	-	0.89	9.9	6.7	5.4	7.4	0.1	2.4	3	0	0	3	3	2	0	LITAF-like	zinc	ribbon	domain
Trm112p	PF03966.16	gi|564289436|ref|YP_008875677.1|	-	1.2	9.7	5.5	3	8.5	0.4	2.2	1	1	1	2	2	2	0	Trm112p-like	protein
zf_UBZ	PF18439.1	gi|564289436|ref|YP_008875677.1|	-	1.5	8.5	6.0	3	7.5	0.1	2.6	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|564289436|ref|YP_008875677.1|	-	3.5	7.8	10.1	2	8.6	2.7	2.7	1	1	1	3	3	3	0	Zinc	ribbon	domain
HATPase_c	PF02518.26	gi|564289437|ref|YP_008875678.1|	-	1.6e-15	57.6	0.0	2.8e-15	56.8	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564289437|ref|YP_008875678.1|	-	1.8e-05	24.7	0.2	5.5e-05	23.1	0.0	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|564289437|ref|YP_008875678.1|	-	4.1e-05	23.5	0.3	0.0001	22.3	0.0	1.9	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
Response_reg	PF00072.24	gi|564289437|ref|YP_008875678.1|	-	7.2e-05	22.9	0.0	0.00012	22.2	0.0	1.4	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c_3	PF13589.6	gi|564289437|ref|YP_008875678.1|	-	0.011	15.6	0.4	0.025	14.4	0.0	1.9	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
OKR_DC_1_N	PF03709.15	gi|564289437|ref|YP_008875678.1|	-	0.027	14.8	0.4	0.051	13.9	0.0	1.7	2	0	0	2	2	2	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
DUF3834	PF12916.7	gi|564289437|ref|YP_008875678.1|	-	0.21	10.8	0.0	0.31	10.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3834)
CoA_binding	PF02629.19	gi|564289438|ref|YP_008875679.1|	-	4.2e-23	81.8	0.8	4.2e-23	81.8	0.8	1.9	3	0	0	3	3	3	1	CoA	binding	domain
Ligase_CoA	PF00549.19	gi|564289438|ref|YP_008875679.1|	-	5e-13	49.1	0.6	1.1e-12	48.1	0.6	1.5	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.6	gi|564289438|ref|YP_008875679.1|	-	2e-09	37.4	0.0	3.7e-09	36.5	0.0	1.5	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|564289438|ref|YP_008875679.1|	-	8.9e-06	26.2	0.0	5.5e-05	23.6	0.0	2.0	2	0	0	2	2	2	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|564289439|ref|YP_008875680.1|	-	1.5e-65	220.5	0.8	2.4e-65	219.9	0.8	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.6	gi|564289439|ref|YP_008875680.1|	-	1.6e-21	76.8	4.0	1.6e-21	76.8	4.0	1.9	2	1	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|564289439|ref|YP_008875680.1|	-	6.1e-14	52.0	1.8	1.1e-11	44.7	0.7	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Ligase_CoA	PF00549.19	gi|564289439|ref|YP_008875680.1|	-	2e-12	47.2	0.4	2e-12	47.2	0.4	2.1	3	0	0	3	3	3	1	CoA-ligase
ATP-grasp	PF02222.22	gi|564289439|ref|YP_008875680.1|	-	6.8e-09	35.5	0.1	1.2e-08	34.7	0.1	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GARS_A	PF01071.19	gi|564289439|ref|YP_008875680.1|	-	7.5e-07	29.1	0.5	1.6e-06	28.0	0.5	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
Dala_Dala_lig_C	PF07478.13	gi|564289439|ref|YP_008875680.1|	-	0.0053	16.3	1.0	0.0053	16.3	1.0	2.1	2	1	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.11	gi|564289439|ref|YP_008875680.1|	-	0.092	12.3	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	RimK-like	ATP-grasp	domain
DUF4891	PF16232.5	gi|564289439|ref|YP_008875680.1|	-	0.11	13.0	0.0	0.39	11.3	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4891)
SIR2	PF02146.17	gi|564289440|ref|YP_008875681.1|	-	2.5e-42	144.8	0.0	3.5e-42	144.3	0.0	1.2	1	0	0	1	1	1	1	Sir2	family
TPP_enzyme_M	PF00205.22	gi|564289440|ref|YP_008875681.1|	-	0.00076	19.2	0.0	0.088	12.6	0.0	2.4	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	central	domain
ATPgrasp_N	PF18130.1	gi|564289440|ref|YP_008875681.1|	-	0.088	13.4	0.6	1.5	9.4	0.0	2.7	3	0	0	3	3	3	0	ATP-grasp	N-terminal	domain
DUF2863	PF11062.8	gi|564289440|ref|YP_008875681.1|	-	0.12	10.8	0.0	0.17	10.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2863)
PAS_4	PF08448.10	gi|564289441|ref|YP_008875682.1|	-	0.004	17.4	0.0	0.0062	16.8	0.0	1.2	1	0	0	1	1	1	1	PAS	fold
Phytase	PF02333.15	gi|564289441|ref|YP_008875682.1|	-	0.12	11.3	0.1	0.21	10.5	0.0	1.4	1	1	0	1	1	1	0	Phytase
T2SSE	PF00437.20	gi|564289443|ref|YP_008875684.1|	-	9.1e-48	162.7	0.0	1.3e-47	162.2	0.0	1.1	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
HTH_19	PF12844.7	gi|564289443|ref|YP_008875684.1|	-	0.099	12.7	0.9	0.74	9.9	0.1	2.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
Mg_chelatase	PF01078.21	gi|564289443|ref|YP_008875684.1|	-	0.15	11.4	0.0	0.31	10.4	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_29	PF13555.6	gi|564289443|ref|YP_008875684.1|	-	0.15	11.8	0.0	0.4	10.5	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
T2SSF	PF00482.23	gi|564289444|ref|YP_008875685.1|	-	4.4e-37	126.8	12.1	2.7e-19	69.3	3.5	2.9	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
DUF2207	PF09972.9	gi|564289444|ref|YP_008875685.1|	-	0.0028	16.5	1.1	1.3	7.8	0.0	3.3	3	0	0	3	3	3	2	Predicted	membrane	protein	(DUF2207)
DUF1129	PF06570.11	gi|564289444|ref|YP_008875685.1|	-	0.026	14.0	2.6	0.55	9.7	0.2	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
7TM_GPCR_Srw	PF10324.9	gi|564289444|ref|YP_008875685.1|	-	0.076	12.3	0.5	0.14	11.4	0.0	1.6	2	0	0	2	2	2	0	Serpentine	type	7TM	GPCR	chemoreceptor	Srw
E1-E2_ATPase	PF00122.20	gi|564289444|ref|YP_008875685.1|	-	0.092	12.3	3.7	0.28	10.7	0.3	2.8	2	0	0	2	2	2	0	E1-E2	ATPase
DUF2721	PF11026.8	gi|564289444|ref|YP_008875685.1|	-	1.8	8.5	18.2	0.051	13.5	0.7	4.2	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF2721)
DUF2116	PF09889.9	gi|564289444|ref|YP_008875685.1|	-	6.7	6.8	4.7	4.8	7.2	2.0	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
DNA_ligase_A_M	PF01068.21	gi|564289445|ref|YP_008875686.1|	-	5.4e-47	160.1	0.0	7.5e-47	159.6	0.0	1.2	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.14	gi|564289445|ref|YP_008875686.1|	-	4.1e-34	118.4	0.0	7.8e-34	117.5	0.0	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.15	gi|564289445|ref|YP_008875686.1|	-	3.3e-17	62.9	0.1	2.9e-16	59.9	0.0	2.5	2	0	0	2	2	2	1	ATP	dependent	DNA	ligase	C	terminal	region
RNA_ligase	PF09414.10	gi|564289445|ref|YP_008875686.1|	-	0.0011	19.3	0.0	0.0018	18.6	0.0	1.3	1	0	0	1	1	1	1	RNA	ligase
mRNA_cap_enzyme	PF01331.19	gi|564289445|ref|YP_008875686.1|	-	0.059	13.2	0.0	1.4	8.7	0.0	2.3	2	0	0	2	2	2	0	mRNA	capping	enzyme,	catalytic	domain
DNA_ligase_OB_2	PF14743.6	gi|564289445|ref|YP_008875686.1|	-	0.098	12.7	0.1	0.45	10.6	0.1	2.1	1	1	0	1	1	1	0	DNA	ligase	OB-like	domain
Lactamase_B_3	PF13483.6	gi|564289446|ref|YP_008875687.1|	-	3.5e-27	95.3	0.0	6.2e-27	94.5	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|564289446|ref|YP_008875687.1|	-	0.0017	17.9	1.1	0.0027	17.3	1.1	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
2TM	PF13239.6	gi|564289447|ref|YP_008875688.1|	-	0.93	9.8	3.9	1.4	9.3	0.3	2.1	1	1	1	2	2	2	0	2TM	domain
PQQ_2	PF13360.6	gi|564289448|ref|YP_008875689.1|	-	1e-33	116.9	32.0	1.4e-16	60.9	5.9	3.3	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|564289448|ref|YP_008875689.1|	-	1.3e-27	95.5	41.0	2.7e-05	24.5	0.6	9.2	9	0	0	9	9	9	9	PQQ-like	domain
PQQ	PF01011.21	gi|564289448|ref|YP_008875689.1|	-	1.2e-14	53.5	21.3	3.1e-05	23.7	0.5	8.3	9	0	0	9	9	9	6	PQQ	enzyme	repeat
TP6A_N	PF04406.14	gi|564289449|ref|YP_008875690.1|	-	5e-15	55.2	0.4	8.5e-15	54.5	0.4	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
cpYpsA	PF12694.7	gi|564289449|ref|YP_008875690.1|	-	0.036	13.9	0.0	0.062	13.1	0.0	1.3	1	0	0	1	1	1	0	Circularly	permutated	YpsA	SLOG	family
Topo-VIb_trans	PF09239.11	gi|564289450|ref|YP_008875691.1|	-	2.3e-63	212.8	0.0	5.3e-63	211.6	0.0	1.6	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
Top6b_C	PF18000.1	gi|564289450|ref|YP_008875691.1|	-	2e-36	124.6	5.5	4.7e-36	123.4	5.5	1.7	1	0	0	1	1	1	1	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
HATPase_c	PF02518.26	gi|564289450|ref|YP_008875691.1|	-	1.1e-13	51.6	0.2	4.6e-13	49.7	0.0	2.2	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.6	gi|564289450|ref|YP_008875691.1|	-	7.7e-11	42.0	0.0	1.8e-10	40.8	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564289450|ref|YP_008875691.1|	-	0.0027	17.7	3.5	0.0055	16.7	0.0	2.8	2	1	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
Dynamin_M	PF01031.20	gi|564289450|ref|YP_008875691.1|	-	0.043	13.0	0.2	0.075	12.2	0.2	1.3	1	0	0	1	1	1	0	Dynamin	central	region
MAF_flag10	PF01973.18	gi|564289450|ref|YP_008875691.1|	-	0.089	12.5	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF115
HATPase_c_5	PF14501.6	gi|564289450|ref|YP_008875691.1|	-	0.13	12.2	0.0	0.44	10.5	0.0	1.9	1	0	0	1	1	1	0	GHKL	domain
DNA_gyraseB	PF00204.25	gi|564289451|ref|YP_008875692.1|	-	5.8e-62	208.2	0.1	1.1e-61	207.3	0.1	1.5	1	0	0	1	1	1	1	DNA	gyrase	B
DNA_gyraseB_C	PF00986.21	gi|564289451|ref|YP_008875692.1|	-	2.6e-30	104.4	0.0	5.4e-30	103.4	0.0	1.6	1	0	0	1	1	1	1	DNA	gyrase	B	subunit,	carboxyl	terminus
HATPase_c	PF02518.26	gi|564289451|ref|YP_008875692.1|	-	2.7e-24	85.8	0.1	7e-24	84.5	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim	PF01751.22	gi|564289451|ref|YP_008875692.1|	-	9.8e-18	64.3	0.0	3.3e-17	62.6	0.0	2.0	2	0	0	2	2	2	1	Toprim	domain
HATPase_c_3	PF13589.6	gi|564289451|ref|YP_008875692.1|	-	6.3e-05	22.8	0.0	0.00014	21.7	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Toprim_4	PF13662.6	gi|564289451|ref|YP_008875692.1|	-	0.11	12.9	0.0	0.31	11.6	0.0	1.7	1	0	0	1	1	1	0	Toprim	domain
DNA_topoisoIV	PF00521.20	gi|564289452|ref|YP_008875693.1|	-	5e-154	513.3	0.0	6.7e-154	512.9	0.0	1.2	1	0	0	1	1	1	1	DNA	gyrase/topoisomerase	IV,	subunit	A
DNA_gyraseA_C	PF03989.13	gi|564289452|ref|YP_008875693.1|	-	1.4e-76	251.8	9.4	2.1e-14	52.7	0.0	6.6	6	0	0	6	6	6	6	DNA	gyrase	C-terminal	domain,	beta-propeller
NTase_sub_bind	PF08780.11	gi|564289452|ref|YP_008875693.1|	-	0.0054	16.7	0.2	0.014	15.4	0.2	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	substrate	binding	protein	like
Nnf1	PF03980.14	gi|564289452|ref|YP_008875693.1|	-	0.038	14.4	2.0	1.9	8.9	1.7	2.5	2	0	0	2	2	2	0	Nnf1
NAD_binding_1	PF00175.21	gi|564289453|ref|YP_008875694.1|	-	1.4e-12	48.3	0.0	5.5e-12	46.3	0.0	1.9	1	1	0	1	1	1	1	Oxidoreductase	NAD-binding	domain
FAD_binding_6	PF00970.24	gi|564289453|ref|YP_008875694.1|	-	6.1e-11	42.5	0.0	1e-10	41.8	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
Arginase	PF00491.21	gi|564289454|ref|YP_008875695.1|	-	3.5e-76	256.4	1.4	4e-76	256.2	1.4	1.0	1	0	0	1	1	1	1	Arginase	family
Epimerase	PF01370.21	gi|564289455|ref|YP_008875696.1|	-	2.4e-41	141.8	0.3	2.8e-41	141.6	0.3	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564289455|ref|YP_008875696.1|	-	8.6e-39	133.9	0.5	1.4e-37	129.8	0.5	2.4	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|564289455|ref|YP_008875696.1|	-	7e-11	41.7	0.2	9.2e-11	41.4	0.2	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|564289455|ref|YP_008875696.1|	-	2e-10	40.1	0.9	1.1e-09	37.8	0.9	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|564289455|ref|YP_008875696.1|	-	1.6e-09	37.3	0.1	3.3e-06	26.5	0.0	2.3	2	0	0	2	2	2	2	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|564289455|ref|YP_008875696.1|	-	2.5e-07	30.1	0.2	7.7e-05	22.0	0.0	2.3	2	0	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|564289455|ref|YP_008875696.1|	-	0.096	12.1	1.0	0.45	9.9	0.1	2.2	1	1	1	2	2	2	0	short	chain	dehydrogenase
KR	PF08659.10	gi|564289455|ref|YP_008875696.1|	-	0.16	11.8	0.1	4.6	7.1	0.1	2.2	2	0	0	2	2	2	0	KR	domain
HrcA_DNA-bdg	PF03444.15	gi|564289456|ref|YP_008875697.1|	-	2.4e-39	132.8	0.1	3.5e-39	132.3	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|564289456|ref|YP_008875697.1|	-	2.2e-07	31.1	0.0	4.4e-07	30.2	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|564289456|ref|YP_008875697.1|	-	3.3e-07	30.1	0.0	5e-07	29.6	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|564289456|ref|YP_008875697.1|	-	0.017	15.0	0.0	0.03	14.2	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Turandot	PF07240.11	gi|564289456|ref|YP_008875697.1|	-	0.059	13.3	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	Stress-inducible	humoral	factor	Turandot
HTH_38	PF13936.6	gi|564289456|ref|YP_008875697.1|	-	0.11	12.2	0.0	0.25	11.2	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
Rio2_N	PF09202.11	gi|564289456|ref|YP_008875697.1|	-	0.14	12.4	0.0	0.24	11.6	0.0	1.4	1	0	0	1	1	1	0	Rio2,	N-terminal
Pyr_redox_2	PF07992.14	gi|564289457|ref|YP_008875698.1|	-	8.3e-40	136.8	0.3	1e-39	136.6	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564289457|ref|YP_008875698.1|	-	2.5e-07	31.2	1.0	1e-05	26.0	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|564289457|ref|YP_008875698.1|	-	0.026	13.8	0.5	3.4	6.9	0.1	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|564289457|ref|YP_008875698.1|	-	0.085	12.8	0.8	15	5.5	0.1	3.1	3	0	0	3	3	3	0	FAD-NAD(P)-binding
PNP_UDP_1	PF01048.20	gi|564289458|ref|YP_008875699.1|	-	5.7e-46	156.7	1.2	6.9e-46	156.4	1.2	1.1	1	0	0	1	1	1	1	Phosphorylase	superfamily
DAO_C	PF16901.5	gi|564289458|ref|YP_008875699.1|	-	0.055	13.3	0.1	0.094	12.6	0.1	1.4	1	0	0	1	1	1	0	C-terminal	domain	of	alpha-glycerophosphate	oxidase
dCMP_cyt_deam_1	PF00383.23	gi|564289459|ref|YP_008875700.1|	-	4e-15	55.5	0.0	4.5e-15	55.4	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.12	gi|564289459|ref|YP_008875700.1|	-	2.7e-13	50.3	0.5	3.6e-13	49.9	0.5	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
PGM_PMM_I	PF02878.16	gi|564289460|ref|YP_008875701.1|	-	2.4e-32	111.5	0.1	5.4e-32	110.4	0.0	1.7	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|564289460|ref|YP_008875701.1|	-	9.4e-22	77.6	0.4	2e-21	76.5	0.4	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|564289460|ref|YP_008875701.1|	-	3.8e-13	49.4	0.0	1.9e-12	47.2	0.0	2.2	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
PGM_PMM_III	PF02880.16	gi|564289460|ref|YP_008875701.1|	-	0.002	18.3	0.1	0.0052	17.0	0.1	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
Methyltransf_21	PF05050.12	gi|564289461|ref|YP_008875702.1|	-	4e-20	72.5	0.0	5.3e-20	72.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
V_cholerae_RfbT	PF05575.11	gi|564289461|ref|YP_008875702.1|	-	1.2e-05	24.8	0.0	1.9e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Vibrio	cholerae	RfbT	protein
Met_10	PF02475.16	gi|564289461|ref|YP_008875702.1|	-	0.026	14.3	0.0	0.037	13.8	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Proteasome	PF00227.26	gi|564289462|ref|YP_008875703.1|	-	2e-43	148.1	0.5	2.3e-43	147.9	0.5	1.0	1	0	0	1	1	1	1	Proteasome	subunit
DUF555	PF04475.12	gi|564289464|ref|YP_008875705.1|	-	1.4e-47	160.2	0.1	1.4e-47	160.2	0.1	1.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF555)
CBS	PF00571.28	gi|564289465|ref|YP_008875706.1|	-	1.9e-20	73.1	0.7	2.3e-09	37.6	0.0	2.4	2	0	0	2	2	2	2	CBS	domain
HTH_3	PF01381.22	gi|564289465|ref|YP_008875706.1|	-	6e-12	45.4	0.1	2.4e-11	43.5	0.2	1.9	2	0	0	2	2	2	1	Helix-turn-helix
HTH_31	PF13560.6	gi|564289465|ref|YP_008875706.1|	-	7e-12	45.5	1.5	1.3e-11	44.6	1.5	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|564289465|ref|YP_008875706.1|	-	4.7e-07	29.7	0.1	7.5e-07	29.1	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|564289465|ref|YP_008875706.1|	-	0.00018	21.4	0.0	0.00034	20.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.6	gi|564289465|ref|YP_008875706.1|	-	0.00036	20.3	1.2	0.00042	20.1	0.1	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|564289465|ref|YP_008875706.1|	-	0.0027	18.1	0.0	0.0058	17.1	0.0	1.6	2	0	0	2	2	1	1	Cro/C1-type	HTH	DNA-binding	domain
Pou	PF00157.17	gi|564289465|ref|YP_008875706.1|	-	0.075	13.0	0.0	0.2	11.7	0.0	1.7	1	1	0	1	1	1	0	Pou	domain	-	N-terminal	to	homeobox	domain
HTH_24	PF13412.6	gi|564289465|ref|YP_008875706.1|	-	0.078	12.5	0.2	0.73	9.4	0.0	2.3	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TetR_N	PF00440.23	gi|564289465|ref|YP_008875706.1|	-	0.19	11.6	0.0	4.9	7.0	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
DUF3618	PF12277.8	gi|564289465|ref|YP_008875706.1|	-	1.5	9.1	6.1	0.21	11.8	1.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3618)
Sugarporin_N	PF11471.8	gi|564289466|ref|YP_008875707.1|	-	0.054	13.5	2.3	0.088	12.8	2.3	1.3	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
MutS_IV	PF05190.18	gi|564289466|ref|YP_008875707.1|	-	0.088	13.2	0.1	0.1	12.9	0.1	1.1	1	0	0	1	1	1	0	MutS	family	domain	IV
AIRS_C	PF02769.22	gi|564289467|ref|YP_008875708.1|	-	2.1e-24	86.4	0.0	3.3e-24	85.8	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|564289467|ref|YP_008875708.1|	-	3.5e-15	56.4	2.8	7.5e-15	55.4	2.7	1.6	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
Peptidase_M50	PF02163.22	gi|564289468|ref|YP_008875709.1|	-	6.2e-05	22.4	14.3	0.035	13.4	8.2	2.7	1	1	1	2	2	2	2	Peptidase	family	M50
TraB	PF01963.17	gi|564289469|ref|YP_008875710.1|	-	2.2e-26	93.3	0.0	1.7e-15	57.6	0.0	2.1	2	0	0	2	2	2	2	TraB	family
PadR	PF03551.14	gi|564289470|ref|YP_008875711.1|	-	6.6e-17	61.2	0.8	8.2e-17	60.9	0.8	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|564289470|ref|YP_008875711.1|	-	0.0032	17.4	0.1	0.0044	17.0	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|564289470|ref|YP_008875711.1|	-	0.02	15.4	0.1	0.027	14.9	0.1	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF1495	PF07381.11	gi|564289470|ref|YP_008875711.1|	-	0.072	12.9	0.0	0.087	12.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4364	PF14277.6	gi|564289470|ref|YP_008875711.1|	-	0.12	12.1	0.1	0.15	11.8	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
4HBT	PF03061.22	gi|564289471|ref|YP_008875712.1|	-	5.4e-17	61.9	0.1	7.8e-17	61.4	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_2	PF13279.6	gi|564289471|ref|YP_008875712.1|	-	0.022	15.2	0.0	0.027	15.0	0.0	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
AglB_L1	PF18079.1	gi|564289474|ref|YP_008875715.1|	-	1e-21	77.0	7.2	2.5e-21	75.7	7.2	1.7	1	0	0	1	1	1	1	Archaeal	glycosylation	protein	B	long	peripheral	domain
STT3	PF02516.14	gi|564289474|ref|YP_008875715.1|	-	3.1e-19	69.3	25.2	3.1e-18	66.0	25.2	2.7	1	1	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
Pollen_Ole_e_I	PF01190.17	gi|564289474|ref|YP_008875715.1|	-	0.073	13.5	0.0	0.16	12.4	0.0	1.5	1	0	0	1	1	1	0	Pollen	proteins	Ole	e	I	like
Glycos_transf_2	PF00535.26	gi|564289475|ref|YP_008875716.1|	-	1.4e-17	64.1	0.1	1.8e-17	63.7	0.1	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289475|ref|YP_008875716.1|	-	2.9e-07	30.6	0.6	2.2e-06	27.7	0.3	1.9	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564289475|ref|YP_008875716.1|	-	3.5e-05	23.4	1.6	0.0034	16.9	0.2	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Sulfatase	PF00884.23	gi|564291311|ref|YP_008875717.1|	-	6.3e-20	71.8	0.3	1.5e-19	70.6	0.4	1.5	1	1	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564291311|ref|YP_008875717.1|	-	0.0032	17.1	0.0	0.013	15.1	0.0	2.0	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|564291311|ref|YP_008875717.1|	-	0.042	13.2	0.0	0.076	12.4	0.0	1.4	1	0	0	1	1	1	0	Metalloenzyme	superfamily
LPG_synthase_TM	PF03706.13	gi|564291312|ref|YP_008875718.1|	-	5e-36	124.8	27.2	5.8e-36	124.6	27.2	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Glycos_transf_2	PF00535.26	gi|564289476|ref|YP_008875719.1|	-	2e-30	105.8	0.0	3.5e-30	105.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289476|ref|YP_008875719.1|	-	3.2e-09	37.0	0.0	4.5e-09	36.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564289476|ref|YP_008875719.1|	-	2.7e-08	33.6	0.0	3.8e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
ABC2_membrane_3	PF12698.7	gi|564289476|ref|YP_008875719.1|	-	0.064	12.3	6.2	2.1	7.4	0.0	2.1	2	0	0	2	2	2	0	ABC-2	family	transporter	protein
Glyco_tranf_2_4	PF13704.6	gi|564289476|ref|YP_008875719.1|	-	0.097	13.2	0.0	0.22	12.1	0.0	1.5	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
PMT_2	PF13231.6	gi|564291313|ref|YP_008875720.1|	-	8.2e-19	68.4	9.6	8.2e-19	68.4	9.6	2.7	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|564291313|ref|YP_008875720.1|	-	1e-11	44.9	9.7	1e-11	44.9	9.7	2.3	2	1	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
SLATT_3	PF18184.1	gi|564291313|ref|YP_008875720.1|	-	0.06	13.5	0.3	0.23	11.6	0.3	2.0	1	0	0	1	1	1	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
DUF2723	PF11028.8	gi|564291313|ref|YP_008875720.1|	-	0.55	10.1	8.9	0.14	12.0	4.7	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2723)
Glycos_transf_1	PF00534.20	gi|564289477|ref|YP_008875721.1|	-	9.4e-30	103.4	0.0	1.2e-29	103.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564289477|ref|YP_008875721.1|	-	8.4e-28	97.5	0.0	1.7e-27	96.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|564289477|ref|YP_008875721.1|	-	1.4e-09	38.3	0.0	3.2e-09	37.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|564289477|ref|YP_008875721.1|	-	0.00026	21.5	4.1	0.00026	21.5	4.1	1.7	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|564289477|ref|YP_008875721.1|	-	0.18	11.8	0.0	0.28	11.2	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
Polysacc_synt_C	PF14667.6	gi|564291314|ref|YP_008875722.1|	-	1.1e-17	64.4	15.5	1.1e-17	64.4	15.5	3.4	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|564291314|ref|YP_008875722.1|	-	5.3e-15	55.4	15.2	5.3e-15	55.4	15.2	2.4	3	0	0	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|564291314|ref|YP_008875722.1|	-	2.5e-14	53.3	25.5	2.5e-14	53.3	25.5	2.2	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MurJ	PF03023.14	gi|564291314|ref|YP_008875722.1|	-	2.5e-10	39.5	29.8	5.4e-09	35.2	29.8	2.2	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
MatE	PF01554.18	gi|564291314|ref|YP_008875722.1|	-	1.7e-07	31.1	7.1	1.7e-07	31.1	7.1	4.5	4	1	0	4	4	4	1	MatE
Sulfatase	PF00884.23	gi|564291315|ref|YP_008875723.1|	-	0.0058	16.1	0.0	0.008	15.6	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Glycos_transf_1	PF00534.20	gi|564291316|ref|YP_008875724.1|	-	1.2e-43	148.6	0.0	1.6e-43	148.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564291316|ref|YP_008875724.1|	-	8.5e-36	123.3	0.0	1.1e-35	122.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|564291316|ref|YP_008875724.1|	-	8.9e-16	58.1	0.0	2.4e-15	56.7	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564291316|ref|YP_008875724.1|	-	0.0002	21.4	0.3	0.0009	19.3	0.0	2.1	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Mito_fiss_Elm1	PF06258.11	gi|564291316|ref|YP_008875724.1|	-	0.046	12.9	0.0	0.071	12.2	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	fission	ELM1
Phosphodiest	PF01663.22	gi|564289478|ref|YP_008875725.1|	-	1e-14	55.0	0.0	1.3e-14	54.6	0.0	1.2	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|564289478|ref|YP_008875725.1|	-	6.3e-06	25.7	0.1	9.4e-06	25.2	0.1	1.3	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Sulfatase	PF00884.23	gi|564289478|ref|YP_008875725.1|	-	0.014	14.8	0.2	0.58	9.5	0.2	2.1	1	1	0	1	1	1	0	Sulfatase
Sulfatase	PF00884.23	gi|564289479|ref|YP_008875726.1|	-	3.2e-36	125.3	0.0	4.4e-36	124.8	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564289479|ref|YP_008875726.1|	-	2.5e-11	43.8	0.0	3.1e-05	23.7	0.0	2.4	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|564289479|ref|YP_008875726.1|	-	4.9e-05	22.1	0.0	0.00011	21.0	0.0	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.12	gi|564289479|ref|YP_008875726.1|	-	0.0029	16.7	0.0	0.0045	16.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
Metalloenzyme	PF01676.18	gi|564289479|ref|YP_008875726.1|	-	0.039	13.3	0.0	0.49	9.7	0.0	2.1	2	0	0	2	2	2	0	Metalloenzyme	superfamily
TrmB	PF01978.19	gi|564289480|ref|YP_008875727.1|	-	9e-19	67.1	0.0	1.8e-18	66.2	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564289480|ref|YP_008875727.1|	-	0.00028	20.6	0.0	0.00052	19.8	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564289480|ref|YP_008875727.1|	-	0.0032	17.3	0.0	0.0083	16.0	0.0	1.7	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|564289480|ref|YP_008875727.1|	-	0.063	13.6	0.0	0.11	12.9	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Regulator_TrmB	PF11495.8	gi|564289480|ref|YP_008875727.1|	-	0.088	12.0	0.0	0.24	10.5	0.0	1.6	1	1	1	2	2	2	0	Archaeal	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|564289480|ref|YP_008875727.1|	-	0.1	12.5	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Glycos_transf_2	PF00535.26	gi|564289482|ref|YP_008875729.1|	-	8e-17	61.6	0.0	1.3e-16	60.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289482|ref|YP_008875729.1|	-	2.2e-08	34.3	0.0	3.5e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|564289482|ref|YP_008875729.1|	-	2e-05	25.0	0.0	3.8e-05	24.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.7	gi|564289482|ref|YP_008875729.1|	-	8.8e-05	22.9	0.0	0.00018	21.9	0.0	1.5	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
SfLAP	PF11139.8	gi|564289482|ref|YP_008875729.1|	-	0.022	14.2	0.5	0.031	13.7	0.5	1.2	1	0	0	1	1	1	0	Sap,	sulfolipid-1-addressing	protein
UPF0060	PF02694.15	gi|564289482|ref|YP_008875729.1|	-	0.088	13.0	1.8	0.14	12.4	1.8	1.3	1	0	0	1	1	1	0	Uncharacterised	BCR,	YnfA/UPF0060	family
HLH	PF00010.26	gi|564289483|ref|YP_008875730.1|	-	0.034	14.1	0.1	0.061	13.3	0.1	1.4	1	0	0	1	1	1	0	Helix-loop-helix	DNA-binding	domain
HxlR	PF01638.17	gi|564289484|ref|YP_008875731.1|	-	2.9e-22	78.3	0.0	3.7e-22	78.0	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_27	PF13463.6	gi|564289484|ref|YP_008875731.1|	-	2.3e-06	28.0	0.0	3.5e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|564289484|ref|YP_008875731.1|	-	2.7e-05	24.3	0.0	3.6e-05	23.8	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|564289484|ref|YP_008875731.1|	-	0.00092	19.2	0.3	0.0013	18.7	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|564289484|ref|YP_008875731.1|	-	0.0021	17.9	0.0	0.0035	17.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|564289484|ref|YP_008875731.1|	-	0.0025	17.6	0.1	0.0036	17.2	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564289484|ref|YP_008875731.1|	-	0.0027	17.5	0.0	0.0042	16.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Replic_Relax	PF13814.6	gi|564289484|ref|YP_008875731.1|	-	0.003	17.6	0.0	0.0036	17.4	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
PadR	PF03551.14	gi|564289484|ref|YP_008875731.1|	-	0.0033	17.4	0.0	0.0053	16.7	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Trp_repressor	PF01371.19	gi|564289484|ref|YP_008875731.1|	-	0.0083	16.2	0.0	0.012	15.7	0.0	1.3	1	0	0	1	1	1	1	Trp	repressor	protein
HTH_45	PF14947.6	gi|564289484|ref|YP_008875731.1|	-	0.013	15.5	0.0	0.018	15.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
TrmB	PF01978.19	gi|564289484|ref|YP_008875731.1|	-	0.019	14.8	0.0	0.029	14.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_43	PF09904.9	gi|564289484|ref|YP_008875731.1|	-	0.085	12.8	0.0	0.12	12.4	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF505	PF04458.12	gi|564289484|ref|YP_008875731.1|	-	0.2	10.0	0.0	0.22	9.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DoxX	PF07681.12	gi|564289485|ref|YP_008875732.1|	-	5.5e-10	39.7	9.3	5.5e-10	39.7	9.3	1.7	2	0	0	2	2	2	1	DoxX
SURF4	PF02077.15	gi|564289485|ref|YP_008875732.1|	-	0.00047	19.8	0.4	0.00096	18.8	0.1	1.5	2	0	0	2	2	2	1	SURF4	family
HR_lesion	PF05514.11	gi|564289485|ref|YP_008875732.1|	-	0.0032	17.6	0.9	0.0066	16.6	0.2	1.7	1	1	1	2	2	2	1	HR-like	lesion-inducing
Rhomboid	PF01694.22	gi|564289486|ref|YP_008875733.1|	-	8.3e-07	29.1	16.2	8.3e-07	29.1	16.2	2.6	2	1	0	2	2	2	1	Rhomboid	family
EMP70	PF02990.16	gi|564289486|ref|YP_008875733.1|	-	0.073	11.7	6.8	0.12	11.0	6.8	1.3	1	0	0	1	1	1	0	Endomembrane	protein	70
DUF1751	PF08551.10	gi|564289486|ref|YP_008875733.1|	-	0.13	12.8	1.9	0.32	11.6	0.4	2.5	2	0	0	2	2	2	0	Eukaryotic	integral	membrane	protein	(DUF1751)
MTS	PF05175.14	gi|564289487|ref|YP_008875734.1|	-	6.9e-13	48.5	0.0	1e-12	47.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|564289487|ref|YP_008875734.1|	-	9.8e-11	41.7	0.1	1e-09	38.4	0.1	2.1	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_25	PF13649.6	gi|564289487|ref|YP_008875734.1|	-	1.9e-10	41.3	0.0	6.9e-10	39.5	0.0	2.0	3	0	0	3	3	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564289487|ref|YP_008875734.1|	-	1.8e-09	37.6	0.0	4e-09	36.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|564289487|ref|YP_008875734.1|	-	5.4e-09	35.9	0.0	7.2e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|564289487|ref|YP_008875734.1|	-	2.3e-08	34.5	0.0	9.9e-08	32.5	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Cons_hypoth95	PF03602.15	gi|564289487|ref|YP_008875734.1|	-	2.7e-07	30.4	0.0	3.8e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_32	PF13679.6	gi|564289487|ref|YP_008875734.1|	-	1.3e-06	28.4	0.0	1.7e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564289487|ref|YP_008875734.1|	-	2.5e-05	23.7	0.0	3.6e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|564289487|ref|YP_008875734.1|	-	0.00043	20.1	0.0	0.00054	19.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564289487|ref|YP_008875734.1|	-	0.00047	20.8	0.0	0.00095	19.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.16	gi|564289487|ref|YP_008875734.1|	-	0.0011	18.3	0.0	0.0017	17.7	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_18	PF12847.7	gi|564289487|ref|YP_008875734.1|	-	0.0036	17.3	0.0	0.0049	16.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|564289487|ref|YP_008875734.1|	-	0.0063	15.8	0.0	0.008	15.5	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_15	PF09445.10	gi|564289487|ref|YP_008875734.1|	-	0.0094	15.5	0.0	0.013	15.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Met_10	PF02475.16	gi|564289487|ref|YP_008875734.1|	-	0.012	15.4	0.0	0.016	14.9	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
RrnaAD	PF00398.20	gi|564289487|ref|YP_008875734.1|	-	0.016	14.3	0.0	0.02	14.0	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
FtsJ	PF01728.19	gi|564289487|ref|YP_008875734.1|	-	0.03	14.5	0.0	0.042	14.0	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_9	PF08003.11	gi|564289487|ref|YP_008875734.1|	-	0.094	11.6	0.0	0.13	11.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
PCMT	PF01135.19	gi|564289487|ref|YP_008875734.1|	-	0.21	11.3	0.0	0.28	10.9	0.0	1.1	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FAE1_CUT1_RppA	PF08392.12	gi|564289487|ref|YP_008875734.1|	-	0.22	10.8	0.0	0.33	10.2	0.0	1.1	1	0	0	1	1	1	0	FAE1/Type	III	polyketide	synthase-like	protein
HATPase_c	PF02518.26	gi|564289488|ref|YP_008875735.1|	-	9.3e-19	68.0	0.0	2.2e-18	66.8	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|564289488|ref|YP_008875735.1|	-	3.2e-13	49.9	0.1	1.1e-12	48.2	0.1	2.0	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|564289488|ref|YP_008875735.1|	-	2.7e-06	27.6	0.0	7.5e-06	26.1	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564289488|ref|YP_008875735.1|	-	5.8e-06	26.3	0.1	1.3e-05	25.1	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|564289488|ref|YP_008875735.1|	-	2.3e-05	24.0	0.1	4.7e-05	23.0	0.1	1.5	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_5	PF14501.6	gi|564289488|ref|YP_008875735.1|	-	0.00086	19.2	0.0	0.002	18.0	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|564289488|ref|YP_008875735.1|	-	0.0079	16.2	0.1	0.033	14.2	0.0	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|564289488|ref|YP_008875735.1|	-	0.014	16.0	0.0	0.028	15.1	0.0	1.6	1	0	0	1	1	1	0	GAF	domain
HATPase_c_3	PF13589.6	gi|564289488|ref|YP_008875735.1|	-	0.11	12.3	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|564289489|ref|YP_008875736.1|	-	4e-15	56.3	0.1	1.1e-14	54.8	0.0	1.8	1	1	1	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|564289489|ref|YP_008875736.1|	-	3.3e-14	53.0	0.0	8e-14	51.8	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c_2	PF13581.6	gi|564289489|ref|YP_008875736.1|	-	1.2e-05	25.3	0.3	4.1e-05	23.5	0.0	2.0	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
HisKA_4TM	PF16926.5	gi|564289489|ref|YP_008875736.1|	-	5.8e-05	22.7	0.2	0.00013	21.6	0.2	1.6	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_5	PF14501.6	gi|564289489|ref|YP_008875736.1|	-	0.00077	19.3	0.0	0.0018	18.1	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|564289489|ref|YP_008875736.1|	-	0.0019	18.2	1.7	0.0061	16.6	0.1	2.7	1	1	2	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_3	PF13589.6	gi|564289489|ref|YP_008875736.1|	-	0.07	13.0	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Response_reg	PF00072.24	gi|564289490|ref|YP_008875737.1|	-	6.5e-19	68.2	0.0	7.7e-19	67.9	0.0	1.1	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|564289491|ref|YP_008875738.1|	-	2.3e-24	85.8	0.6	2.7e-11	43.7	0.0	3.0	3	0	0	3	3	3	2	PAS	fold
HATPase_c	PF02518.26	gi|564289491|ref|YP_008875738.1|	-	1e-22	80.7	0.0	3.4e-22	79.1	0.0	1.9	2	0	0	2	2	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|564289491|ref|YP_008875738.1|	-	6.9e-14	52.0	0.0	2.9e-07	30.7	0.0	2.9	2	1	0	2	2	2	2	PAS	domain
PAS	PF00989.25	gi|564289491|ref|YP_008875738.1|	-	2.9e-13	49.8	0.0	5.1e-06	26.5	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
GAF_2	PF13185.6	gi|564289491|ref|YP_008875738.1|	-	2.5e-10	40.8	1.6	8.1e-10	39.1	0.1	2.7	2	1	0	2	2	2	1	GAF	domain
HisKA	PF00512.25	gi|564289491|ref|YP_008875738.1|	-	3.4e-10	39.8	0.0	3.4e-10	39.8	0.0	2.5	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|564289491|ref|YP_008875738.1|	-	1.9e-09	37.3	0.0	1.8e-08	34.2	0.0	2.7	2	0	0	2	2	2	1	PAS	domain
HATPase_c_5	PF14501.6	gi|564289491|ref|YP_008875738.1|	-	1.9e-08	34.1	0.0	3.5e-08	33.3	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|564289491|ref|YP_008875738.1|	-	1.4e-05	25.0	0.2	3.8e-05	23.6	0.2	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
GAF_3	PF13492.6	gi|564289491|ref|YP_008875738.1|	-	0.00098	19.5	0.0	0.003	17.9	0.0	1.9	1	0	0	1	1	1	1	GAF	domain
sCache_3_3	PF17202.4	gi|564289491|ref|YP_008875738.1|	-	0.069	13.6	0.0	0.17	12.3	0.0	1.6	1	0	0	1	1	1	0	Single	cache	domain	3
HATPase_c_3	PF13589.6	gi|564289491|ref|YP_008875738.1|	-	0.12	12.2	0.0	0.28	11.0	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TelA	PF05816.11	gi|564289491|ref|YP_008875738.1|	-	0.46	9.5	4.0	2.4	7.1	0.6	2.4	2	1	0	2	2	2	0	Toxic	anion	resistance	protein	(TelA)
CorA	PF01544.18	gi|564289491|ref|YP_008875738.1|	-	0.62	9.3	6.4	1.5	8.1	2.8	2.4	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Diphthamide_syn	PF01866.17	gi|564289492|ref|YP_008875739.1|	-	2e-78	263.9	0.0	2.4e-78	263.6	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
GTP-bdg_N	PF13167.6	gi|564289492|ref|YP_008875739.1|	-	0.017	15.8	0.0	1	10.1	0.0	2.4	2	0	0	2	2	2	0	GTP-binding	GTPase	N-terminal
DAHP_snth_FXD	PF18152.1	gi|564289492|ref|YP_008875739.1|	-	0.19	11.6	0.0	0.55	10.1	0.0	1.8	1	0	0	1	1	1	0	DAHP	synthase	ferredoxin-like	domain
MCPsignal	PF00015.21	gi|564289493|ref|YP_008875740.1|	-	1.1e-35	122.9	48.9	8.2e-34	116.9	27.5	3.6	1	1	1	3	3	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS	PF00989.25	gi|564289493|ref|YP_008875740.1|	-	2.6e-14	53.2	0.0	1.2e-13	51.0	0.0	2.1	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|564289493|ref|YP_008875740.1|	-	5e-12	46.1	0.1	3e-11	43.5	0.1	2.4	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|564289493|ref|YP_008875740.1|	-	2.2e-07	31.1	0.0	1.1e-06	28.8	0.0	2.2	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|564289493|ref|YP_008875740.1|	-	2e-06	27.7	0.1	9.3e-06	25.5	0.1	2.2	1	1	0	1	1	1	1	PAS	domain
Laminin_II	PF06009.12	gi|564289493|ref|YP_008875740.1|	-	6e-06	26.3	32.8	0.0012	18.8	7.8	4.2	1	1	4	5	5	5	5	Laminin	Domain	II
DUF948	PF06103.11	gi|564289493|ref|YP_008875740.1|	-	3.4e-05	24.0	31.5	0.073	13.3	1.4	4.8	2	2	1	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
BLOC1_2	PF10046.9	gi|564289493|ref|YP_008875740.1|	-	8.9e-05	22.7	27.1	0.011	16.0	0.8	4.7	1	1	1	4	4	4	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PAS_7	PF12860.7	gi|564289493|ref|YP_008875740.1|	-	0.0025	18.0	0.0	0.0025	18.0	0.0	4.1	2	2	3	5	5	5	1	PAS	fold
Alanine_zipper	PF11839.8	gi|564289493|ref|YP_008875740.1|	-	0.0026	18.1	3.7	0.0026	18.1	3.7	5.0	2	1	2	4	4	4	1	Alanine-zipper,	major	outer	membrane	lipoprotein
DUF1664	PF07889.12	gi|564289493|ref|YP_008875740.1|	-	0.0042	17.1	30.6	0.56	10.2	2.1	4.3	1	1	2	4	4	4	3	Protein	of	unknown	function	(DUF1664)
Fib_alpha	PF08702.10	gi|564289493|ref|YP_008875740.1|	-	0.0051	17.0	20.5	0.33	11.1	2.1	3.6	1	1	3	4	4	4	2	Fibrinogen	alpha/beta	chain	family
ApoO	PF09769.9	gi|564289493|ref|YP_008875740.1|	-	0.0053	16.7	11.5	0.55	10.2	0.4	3.8	2	2	2	4	4	4	2	Apolipoprotein	O
CHASE3	PF05227.13	gi|564289493|ref|YP_008875740.1|	-	0.0061	16.5	3.8	0.0061	16.5	3.8	4.1	1	1	1	3	3	3	1	CHASE3	domain
Corona_S2	PF01601.16	gi|564289493|ref|YP_008875740.1|	-	0.0097	14.4	1.1	0.0097	14.4	1.1	2.3	1	1	0	2	2	2	1	Coronavirus	S2	glycoprotein
Flagellar_rod	PF05149.12	gi|564289493|ref|YP_008875740.1|	-	0.013	15.0	24.3	0.048	13.1	7.3	3.1	1	1	1	3	3	3	0	Paraflagellar	rod	protein
MT0933_antitox	PF14013.6	gi|564289493|ref|YP_008875740.1|	-	0.037	14.3	1.9	0.037	14.3	1.9	4.6	4	2	1	5	5	4	0	MT0933-like	antitoxin	protein
Syntaxin-6_N	PF09177.11	gi|564289493|ref|YP_008875740.1|	-	0.049	14.2	28.0	0.34	11.5	1.6	4.4	2	2	1	3	3	3	0	Syntaxin	6,	N-terminal
Collagen_mid	PF15984.5	gi|564289493|ref|YP_008875740.1|	-	0.067	12.9	1.1	1.5	8.5	0.1	2.3	2	0	0	2	2	2	0	Bacterial	collagen,	middle	region
SbsC_C	PF18058.1	gi|564289493|ref|YP_008875740.1|	-	0.11	12.7	0.2	0.11	12.7	0.2	2.8	2	2	1	3	3	3	0	SbsC	C-terminal	domain
MLTR_LBD	PF17765.1	gi|564289493|ref|YP_008875740.1|	-	0.19	11.9	0.0	0.19	11.9	0.0	3.1	3	2	1	4	4	4	0	MmyB-like	transcription	regulator	ligand	binding	domain
ISG65-75	PF11727.8	gi|564289493|ref|YP_008875740.1|	-	0.2	10.9	30.2	0.42	9.8	7.9	3.2	1	1	2	3	3	3	0	Invariant	surface	glycoprotein
COG2	PF06148.11	gi|564289493|ref|YP_008875740.1|	-	0.22	11.6	29.3	1.1	9.4	2.1	4.8	1	1	1	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF577	PF04510.12	gi|564289493|ref|YP_008875740.1|	-	0.28	11.1	2.8	1.1	9.2	0.2	2.8	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF577)
DUF2451	PF10474.9	gi|564289493|ref|YP_008875740.1|	-	0.32	10.8	2.3	2.4	7.9	0.1	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	C-terminus	(DUF2451)
dCache_1	PF02743.18	gi|564289493|ref|YP_008875740.1|	-	0.38	10.5	22.6	6	6.6	2.2	4.3	1	1	2	4	4	4	0	Cache	domain
T3SSipB	PF16535.5	gi|564289493|ref|YP_008875740.1|	-	0.4	11.1	35.1	2.2	8.8	9.8	3.3	1	1	1	3	3	3	0	Type	III	cell	invasion	protein	SipB
F_actin_bind	PF08919.10	gi|564289493|ref|YP_008875740.1|	-	0.45	10.6	10.5	0.67	10.1	0.1	4.1	1	1	3	4	4	3	0	F-actin	binding
LXG	PF04740.12	gi|564289493|ref|YP_008875740.1|	-	0.48	10.1	31.2	1.2	8.8	4.6	3.3	1	1	1	3	3	3	0	LXG	domain	of	WXG	superfamily
DUF883	PF05957.13	gi|564289493|ref|YP_008875740.1|	-	0.6	10.8	32.7	0.26	11.9	4.3	4.7	2	1	4	6	6	6	0	Bacterial	protein	of	unknown	function	(DUF883)
GLE1	PF07817.13	gi|564289493|ref|YP_008875740.1|	-	0.61	9.3	3.5	0.79	8.9	0.2	2.3	2	1	0	2	2	2	0	GLE1-like	protein
DUF812	PF05667.11	gi|564289493|ref|YP_008875740.1|	-	0.66	8.8	34.5	0.49	9.2	21.1	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
Lipoprotein_7	PF01540.16	gi|564289493|ref|YP_008875740.1|	-	0.76	9.0	27.5	0.96	8.7	17.2	2.1	1	1	1	2	2	2	0	Adhesin	lipoprotein
Spectrin	PF00435.21	gi|564289493|ref|YP_008875740.1|	-	0.81	10.2	26.7	0.28	11.7	7.0	4.1	2	2	3	5	5	5	0	Spectrin	repeat
TMPIT	PF07851.13	gi|564289493|ref|YP_008875740.1|	-	0.94	8.7	22.0	1.5	8.0	2.9	3.4	1	1	2	3	3	3	0	TMPIT-like	protein
FlgN	PF05130.12	gi|564289493|ref|YP_008875740.1|	-	0.95	10.0	27.8	2.4	8.6	11.2	3.2	1	1	3	4	4	4	0	FlgN	protein
FH2	PF02181.23	gi|564289493|ref|YP_008875740.1|	-	0.96	8.5	17.4	0.49	9.4	3.4	2.6	2	1	0	2	2	2	0	Formin	Homology	2	Domain
ATG16	PF08614.11	gi|564289493|ref|YP_008875740.1|	-	1.4	9.1	33.9	0.62	10.2	11.7	2.3	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
HAUS6_N	PF14661.6	gi|564289493|ref|YP_008875740.1|	-	1.5	8.4	12.8	0.12	12.0	0.2	2.6	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Peptidase_C65	PF10275.9	gi|564289493|ref|YP_008875740.1|	-	1.7	8.0	13.9	1.4	8.4	1.9	3.1	1	1	1	3	3	3	0	Peptidase	C65	Otubain
Cob_adeno_trans	PF01923.18	gi|564289493|ref|YP_008875740.1|	-	1.7	8.7	21.0	2.8	8.0	8.9	3.3	1	1	2	3	3	3	0	Cobalamin	adenosyltransferase
Sec34	PF04136.15	gi|564289493|ref|YP_008875740.1|	-	2.6	7.9	20.9	15	5.5	3.5	4.5	1	1	3	5	5	5	0	Sec34-like	family
Med9	PF07544.13	gi|564289493|ref|YP_008875740.1|	-	3.4	7.8	16.2	4.3	7.5	0.7	4.9	4	1	2	6	6	5	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
NPV_P10	PF05531.12	gi|564289493|ref|YP_008875740.1|	-	3.8	8.0	27.3	2.1	8.9	4.7	5.2	2	2	3	5	5	5	0	Nucleopolyhedrovirus	P10	protein
BAR_3	PF16746.5	gi|564289493|ref|YP_008875740.1|	-	4.5	6.9	13.7	0.33	10.6	3.9	2.6	2	1	0	2	2	2	0	BAR	domain	of	APPL	family
CorA	PF01544.18	gi|564289493|ref|YP_008875740.1|	-	4.6	6.5	22.5	3.1	7.0	9.2	2.7	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Golgin_A5	PF09787.9	gi|564289493|ref|YP_008875740.1|	-	4.9	6.5	34.6	2	7.8	15.8	2.3	2	0	0	2	2	2	0	Golgin	subfamily	A	member	5
Abi_C	PF14355.6	gi|564289493|ref|YP_008875740.1|	-	4.9	7.3	5.3	14	5.9	0.1	3.8	4	1	0	4	4	3	0	Abortive	infection	C-terminus
MAD	PF05557.13	gi|564289493|ref|YP_008875740.1|	-	5.3	5.3	31.1	4.9	5.4	10.8	2.1	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
YkyA	PF10368.9	gi|564289493|ref|YP_008875740.1|	-	5.5	6.6	40.1	2.5	7.8	5.3	3.8	1	1	2	3	3	3	0	Putative	cell-wall	binding	lipoprotein
CENP-K	PF11802.8	gi|564289493|ref|YP_008875740.1|	-	6.2	6.3	12.6	0.88	9.1	5.1	2.3	1	1	1	2	2	2	0	Centromere-associated	protein	K
DUF2203	PF09969.9	gi|564289493|ref|YP_008875740.1|	-	6.2	7.6	29.6	12	6.7	3.2	4.9	1	1	4	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
DUF489	PF04356.12	gi|564289493|ref|YP_008875740.1|	-	6.5	6.7	8.5	2.2	8.2	4.4	2.3	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
Tweety	PF04906.13	gi|564289493|ref|YP_008875740.1|	-	6.7	5.3	17.4	0.15	10.7	4.0	3.2	1	1	2	4	4	4	0	Tweety
TMP_2	PF06791.13	gi|564289493|ref|YP_008875740.1|	-	7.3	6.2	27.7	6.4	6.4	7.7	3.7	1	1	2	3	3	3	0	Prophage	tail	length	tape	measure	protein
Com_YlbF	PF06133.11	gi|564289494|ref|YP_008875741.1|	-	4e-22	78.8	10.9	4.5e-22	78.6	10.9	1.0	1	0	0	1	1	1	1	Control	of	competence	regulator	ComK,	YlbF/YmcA
DUF3080	PF11279.8	gi|564289494|ref|YP_008875741.1|	-	0.0018	17.5	0.9	0.0022	17.3	0.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3080)
Usp	PF00582.26	gi|564289495|ref|YP_008875742.1|	-	2e-31	109.4	1.8	2.3e-31	109.2	1.8	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|564289495|ref|YP_008875742.1|	-	0.023	14.7	0.0	0.041	13.9	0.0	1.3	1	1	0	1	1	1	0	DNA	photolyase
Lactamase_B_2	PF12706.7	gi|564289496|ref|YP_008875743.1|	-	1.2e-17	64.1	1.5	1.5e-17	63.8	1.5	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|564289496|ref|YP_008875743.1|	-	1.5e-11	44.4	0.2	2.1e-11	44.0	0.2	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF3038	PF11237.8	gi|564289496|ref|YP_008875743.1|	-	0.036	14.1	0.0	0.053	13.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3038)
NPV_P10	PF05531.12	gi|564289497|ref|YP_008875744.1|	-	1.7e-06	28.4	4.5	0.028	14.9	0.7	3.3	2	1	1	3	3	3	2	Nucleopolyhedrovirus	P10	protein
Spc7	PF08317.11	gi|564289497|ref|YP_008875744.1|	-	0.00011	21.2	2.7	0.0002	20.4	2.7	1.3	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Laminin_II	PF06009.12	gi|564289497|ref|YP_008875744.1|	-	0.0002	21.4	0.3	0.00042	20.3	0.3	1.6	1	0	0	1	1	1	1	Laminin	Domain	II
DUF4200	PF13863.6	gi|564289497|ref|YP_008875744.1|	-	0.00049	20.5	0.7	0.035	14.5	0.8	2.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4200)
ABC_tran_CTD	PF16326.5	gi|564289497|ref|YP_008875744.1|	-	0.00051	20.2	8.0	0.16	12.2	2.2	2.7	2	0	0	2	2	2	2	ABC	transporter	C-terminal	domain
CENP-F_leu_zip	PF10473.9	gi|564289497|ref|YP_008875744.1|	-	0.0011	19.0	6.0	0.0031	17.5	5.3	2.0	1	1	1	2	2	2	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
FPP	PF05911.11	gi|564289497|ref|YP_008875744.1|	-	0.0027	16.0	2.0	0.0035	15.6	2.0	1.1	1	0	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
DUF3450	PF11932.8	gi|564289497|ref|YP_008875744.1|	-	0.0041	16.4	1.3	0.0041	16.4	1.3	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3450)
ZapB	PF06005.12	gi|564289497|ref|YP_008875744.1|	-	0.0055	17.1	1.1	0.03	14.7	0.3	2.5	1	1	1	2	2	2	1	Cell	division	protein	ZapB
Baculo_PEP_C	PF04513.12	gi|564289497|ref|YP_008875744.1|	-	0.0058	16.7	0.2	0.29	11.2	0.1	2.3	1	1	1	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Filament	PF00038.21	gi|564289497|ref|YP_008875744.1|	-	0.0059	16.2	4.5	0.011	15.3	3.4	1.8	1	1	1	2	2	2	1	Intermediate	filament	protein
DUF1664	PF07889.12	gi|564289497|ref|YP_008875744.1|	-	0.0067	16.5	2.0	0.049	13.7	0.2	2.6	1	1	2	3	3	2	1	Protein	of	unknown	function	(DUF1664)
LXG	PF04740.12	gi|564289497|ref|YP_008875744.1|	-	0.009	15.7	1.8	0.015	15.0	1.7	1.4	1	1	0	1	1	1	1	LXG	domain	of	WXG	superfamily
Fib_alpha	PF08702.10	gi|564289497|ref|YP_008875744.1|	-	0.011	15.9	0.5	0.034	14.3	0.2	1.9	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
PspA_IM30	PF04012.12	gi|564289497|ref|YP_008875744.1|	-	0.011	15.3	1.7	0.16	11.5	0.1	2.3	1	1	1	2	2	2	0	PspA/IM30	family
End3	PF12761.7	gi|564289497|ref|YP_008875744.1|	-	0.012	15.8	1.3	0.099	12.8	0.4	2.2	1	1	1	2	2	2	0	Actin	cytoskeleton-regulatory	complex	protein	END3
TolA_bind_tri	PF16331.5	gi|564289497|ref|YP_008875744.1|	-	0.013	15.6	4.1	0.045	13.8	0.1	2.9	2	1	1	3	3	3	0	TolA	binding	protein	trimerisation
EzrA	PF06160.12	gi|564289497|ref|YP_008875744.1|	-	0.014	13.7	1.8	0.026	12.7	1.8	1.4	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
DUF812	PF05667.11	gi|564289497|ref|YP_008875744.1|	-	0.016	14.1	3.5	0.021	13.7	3.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Laminin_I	PF06008.14	gi|564289497|ref|YP_008875744.1|	-	0.018	14.8	1.2	0.03	14.0	1.2	1.4	1	0	0	1	1	1	0	Laminin	Domain	I
DUF948	PF06103.11	gi|564289497|ref|YP_008875744.1|	-	0.019	15.2	3.3	0.028	14.7	0.2	2.7	3	0	0	3	3	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF4988	PF16378.5	gi|564289497|ref|YP_008875744.1|	-	0.02	14.6	0.8	0.14	11.8	0.3	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function
Nsp1_C	PF05064.13	gi|564289497|ref|YP_008875744.1|	-	0.02	14.7	3.5	0.039	13.7	3.5	1.5	1	0	0	1	1	1	0	Nsp1-like	C-terminal	region
HBM	PF16591.5	gi|564289497|ref|YP_008875744.1|	-	0.021	14.3	5.0	0.75	9.2	0.4	3.0	1	1	2	3	3	3	0	Helical	bimodular	sensor	domain
Spectrin	PF00435.21	gi|564289497|ref|YP_008875744.1|	-	0.022	15.3	1.1	0.022	15.3	1.1	2.4	1	1	1	2	2	2	0	Spectrin	repeat
AAA_13	PF13166.6	gi|564289497|ref|YP_008875744.1|	-	0.024	13.3	0.8	0.033	12.9	0.8	1.2	1	0	0	1	1	1	0	AAA	domain
BLOC1_2	PF10046.9	gi|564289497|ref|YP_008875744.1|	-	0.026	14.8	3.5	7.2	7.0	0.1	3.1	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FlaC_arch	PF05377.11	gi|564289497|ref|YP_008875744.1|	-	0.026	14.9	5.1	1.4	9.4	0.2	3.7	1	1	2	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
HrpB7	PF09486.10	gi|564289497|ref|YP_008875744.1|	-	0.03	14.7	3.2	0.03	14.7	3.2	2.9	1	1	2	3	3	3	0	Bacterial	type	III	secretion	protein	(HrpB7)
Fez1	PF06818.15	gi|564289497|ref|YP_008875744.1|	-	0.03	14.8	3.4	0.11	12.9	1.5	2.0	1	1	1	2	2	2	0	Fez1
DUF5082	PF16888.5	gi|564289497|ref|YP_008875744.1|	-	0.034	14.4	5.1	2.8	8.3	0.4	3.1	1	1	2	3	3	2	0	Domain	of	unknown	function	(DUF5082)
Sec34	PF04136.15	gi|564289497|ref|YP_008875744.1|	-	0.042	13.7	0.7	0.12	12.2	0.4	1.8	1	1	1	2	2	2	0	Sec34-like	family
MAD	PF05557.13	gi|564289497|ref|YP_008875744.1|	-	0.043	12.2	0.9	0.064	11.6	0.9	1.2	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
DUF16	PF01519.16	gi|564289497|ref|YP_008875744.1|	-	0.048	14.2	2.6	0.17	12.4	1.3	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
HAUS-augmin3	PF14932.6	gi|564289497|ref|YP_008875744.1|	-	0.051	13.1	0.1	0.091	12.3	0.1	1.4	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
Img2	PF05046.14	gi|564289497|ref|YP_008875744.1|	-	0.052	13.8	0.1	5.5	7.4	0.0	2.6	2	0	0	2	2	2	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
Prefoldin	PF02996.17	gi|564289497|ref|YP_008875744.1|	-	0.054	13.4	5.0	28	4.6	0.1	4.0	1	1	3	4	4	4	0	Prefoldin	subunit
Lambda_tail_I	PF06805.12	gi|564289497|ref|YP_008875744.1|	-	0.058	13.7	0.1	5.6	7.4	0.0	2.6	1	1	1	2	2	2	0	Bacteriophage	lambda	tail	assembly	protein	I
TBCC_N	PF16752.5	gi|564289497|ref|YP_008875744.1|	-	0.067	13.6	5.0	1	9.8	0.3	2.6	1	1	1	2	2	2	0	Tubulin-specific	chaperone	C	N-terminal	domain
ATG16	PF08614.11	gi|564289497|ref|YP_008875744.1|	-	0.073	13.3	4.9	0.15	12.2	4.3	1.9	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
Syntaxin-6_N	PF09177.11	gi|564289497|ref|YP_008875744.1|	-	0.077	13.6	5.1	0.57	10.8	4.0	2.7	1	1	1	2	2	1	0	Syntaxin	6,	N-terminal
Atg14	PF10186.9	gi|564289497|ref|YP_008875744.1|	-	0.08	12.0	0.3	0.23	10.5	0.1	1.6	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DivIVA	PF05103.13	gi|564289497|ref|YP_008875744.1|	-	0.086	12.9	3.0	2.3	8.3	0.6	2.6	2	0	0	2	2	2	0	DivIVA	protein
Syntaxin	PF00804.25	gi|564289497|ref|YP_008875744.1|	-	0.095	12.4	0.6	0.18	11.5	0.1	1.6	2	0	0	2	2	1	0	Syntaxin
Not3	PF04065.15	gi|564289497|ref|YP_008875744.1|	-	0.097	12.1	3.4	0.47	9.8	0.9	2.4	1	1	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
MscS_porin	PF12795.7	gi|564289497|ref|YP_008875744.1|	-	0.1	12.1	2.3	0.32	10.5	2.3	1.7	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
LPP	PF04728.13	gi|564289497|ref|YP_008875744.1|	-	0.1	13.0	0.6	0.1	13.0	0.6	4.0	3	2	1	4	4	4	0	Lipoprotein	leucine-zipper
DivIC	PF04977.15	gi|564289497|ref|YP_008875744.1|	-	0.11	12.3	8.9	5.2	6.9	0.0	4.1	3	1	1	4	4	3	0	Septum	formation	initiator
COG6	PF06419.11	gi|564289497|ref|YP_008875744.1|	-	0.14	10.3	0.4	0.33	9.1	0.0	1.7	2	1	0	2	2	1	0	Conserved	oligomeric	complex	COG6
STAT_alpha	PF01017.20	gi|564289497|ref|YP_008875744.1|	-	0.16	11.9	0.0	0.23	11.3	0.0	1.2	1	0	0	1	1	1	0	STAT	protein,	all-alpha	domain
COG2	PF06148.11	gi|564289497|ref|YP_008875744.1|	-	0.16	12.1	2.3	3.2	7.8	0.6	2.5	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
FUSC	PF04632.12	gi|564289497|ref|YP_008875744.1|	-	0.16	10.5	0.8	0.32	9.5	0.1	1.6	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
SesA	PF17107.5	gi|564289497|ref|YP_008875744.1|	-	0.16	12.2	0.4	0.37	11.0	0.2	1.8	2	0	0	2	2	1	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
Rab5-bind	PF09311.11	gi|564289497|ref|YP_008875744.1|	-	0.16	11.3	4.6	0.36	10.2	0.2	2.1	1	1	1	2	2	2	0	Rabaptin-like	protein
Golgin_A5	PF09787.9	gi|564289497|ref|YP_008875744.1|	-	0.16	11.4	6.7	0.15	11.5	4.9	1.6	1	1	1	2	2	2	0	Golgin	subfamily	A	member	5
Tropomyosin_1	PF12718.7	gi|564289497|ref|YP_008875744.1|	-	0.16	12.1	7.4	0.47	10.6	7.4	1.8	1	1	0	1	1	1	0	Tropomyosin	like
Sugarporin_N	PF11471.8	gi|564289497|ref|YP_008875744.1|	-	0.17	11.9	0.7	3	7.9	0.1	2.5	2	0	0	2	2	2	0	Maltoporin	periplasmic	N-terminal	extension
HMMR_N	PF15905.5	gi|564289497|ref|YP_008875744.1|	-	0.17	11.3	3.8	0.23	10.9	2.0	1.7	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
DUF4349	PF14257.6	gi|564289497|ref|YP_008875744.1|	-	0.18	11.2	10.8	2.2	7.7	0.2	2.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4349)
BST2	PF16716.5	gi|564289497|ref|YP_008875744.1|	-	0.29	11.7	1.2	7.3	7.2	0.8	2.8	1	1	0	2	2	2	0	Bone	marrow	stromal	antigen	2
FAM184	PF15665.5	gi|564289497|ref|YP_008875744.1|	-	0.33	10.7	2.8	0.62	9.8	2.8	1.5	1	0	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
TPR_MLP1_2	PF07926.12	gi|564289497|ref|YP_008875744.1|	-	0.34	11.0	6.1	1.1	9.3	3.6	2.6	1	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
Cytochrom_B562	PF07361.11	gi|564289497|ref|YP_008875744.1|	-	0.52	11.0	3.4	1.4	9.7	2.1	2.1	1	1	1	2	2	2	0	Cytochrome	b562
DUF2353	PF09789.9	gi|564289497|ref|YP_008875744.1|	-	0.59	9.4	3.9	1.1	8.6	2.9	1.8	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
Cob_adeno_trans	PF01923.18	gi|564289497|ref|YP_008875744.1|	-	0.61	10.2	3.7	8	6.6	2.0	2.7	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
DUF1515	PF07439.11	gi|564289497|ref|YP_008875744.1|	-	0.66	10.0	3.8	2	8.5	0.6	2.8	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF1515)
IFT57	PF10498.9	gi|564289497|ref|YP_008875744.1|	-	0.8	8.6	5.7	3.2	6.6	5.7	2.0	1	1	0	1	1	1	0	Intra-flagellar	transport	protein	57
XhlA	PF10779.9	gi|564289497|ref|YP_008875744.1|	-	0.89	9.8	6.5	11	6.3	2.1	3.3	2	1	1	3	3	3	0	Haemolysin	XhlA
DUF241	PF03087.14	gi|564289497|ref|YP_008875744.1|	-	1.1	9.0	3.0	4.8	6.9	0.1	2.4	1	1	1	2	2	2	0	Arabidopsis	protein	of	unknown	function
APG6_N	PF17675.1	gi|564289497|ref|YP_008875744.1|	-	1.2	9.7	9.8	8.4	6.9	8.8	2.4	1	1	1	2	2	2	0	Apg6	coiled-coil	region
Phage_GP20	PF06810.11	gi|564289497|ref|YP_008875744.1|	-	1.3	8.8	10.2	1.1	9.1	3.7	3.0	1	1	0	2	2	2	0	Phage	minor	structural	protein	GP20
DHR10	PF18595.1	gi|564289497|ref|YP_008875744.1|	-	1.5	8.9	6.5	3.3	7.8	2.7	2.4	1	1	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
Prefoldin_2	PF01920.20	gi|564289497|ref|YP_008875744.1|	-	1.5	8.8	6.6	14	5.7	0.0	3.5	1	1	2	3	3	3	0	Prefoldin	subunit
DUF4407	PF14362.6	gi|564289497|ref|YP_008875744.1|	-	1.7	7.9	5.1	3.8	6.8	5.1	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
THOC7	PF05615.13	gi|564289497|ref|YP_008875744.1|	-	1.7	8.9	4.5	35	4.7	4.5	2.8	1	1	0	1	1	1	0	Tho	complex	subunit	7
MerR-DNA-bind	PF09278.11	gi|564289497|ref|YP_008875744.1|	-	3.3	8.3	8.0	86	3.8	4.2	3.4	2	1	1	3	3	3	0	MerR,	DNA	binding
UPF0242	PF06785.11	gi|564289497|ref|YP_008875744.1|	-	4.3	7.4	6.0	13	5.8	6.0	1.8	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF4795	PF16043.5	gi|564289497|ref|YP_008875744.1|	-	4.8	6.7	7.5	10	5.7	7.5	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
SlyX	PF04102.12	gi|564289497|ref|YP_008875744.1|	-	5	7.8	8.1	3.6	8.3	0.6	3.6	1	1	2	4	4	3	0	SlyX
TMF_TATA_bd	PF12325.8	gi|564289497|ref|YP_008875744.1|	-	6	7.1	8.0	3.4	7.9	4.9	2.2	2	1	0	2	2	1	0	TATA	element	modulatory	factor	1	TATA	binding
HSBP1	PF06825.12	gi|564289497|ref|YP_008875744.1|	-	6.8	6.6	8.3	29	4.6	0.1	3.5	2	1	1	3	3	3	0	Heat	shock	factor	binding	protein	1
HisG	PF01634.18	gi|564289498|ref|YP_008875745.1|	-	0.038	13.9	0.0	0.076	13.0	0.0	1.6	1	1	0	1	1	1	0	ATP	phosphoribosyltransferase
ABC2_membrane_2	PF12679.7	gi|564289499|ref|YP_008875746.1|	-	3.2e-21	75.9	24.9	3.4e-19	69.2	24.9	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|564289499|ref|YP_008875746.1|	-	0.0013	18.2	9.1	0.0013	18.2	9.1	1.4	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|564289499|ref|YP_008875746.1|	-	4.8	6.2	7.4	2	7.5	5.2	1.3	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|564289500|ref|YP_008875747.1|	-	3.7e-28	98.7	0.0	6e-28	98.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289500|ref|YP_008875747.1|	-	2.8e-11	43.8	0.7	1.6e-06	28.1	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|564289500|ref|YP_008875747.1|	-	1.9e-05	25.3	0.0	3.7e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
ATP-synt_ab	PF00006.25	gi|564289500|ref|YP_008875747.1|	-	0.047	13.3	0.1	0.28	10.8	0.0	1.8	1	1	1	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_13	PF13166.6	gi|564289500|ref|YP_008875747.1|	-	0.051	12.2	0.1	0.07	11.8	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564289500|ref|YP_008875747.1|	-	0.094	12.8	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|564289500|ref|YP_008875747.1|	-	0.12	12.7	0.1	0.35	11.2	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|564289500|ref|YP_008875747.1|	-	0.21	12.1	0.1	0.31	11.5	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
DUF3584	PF12128.8	gi|564289500|ref|YP_008875747.1|	-	0.22	9.0	0.4	0.29	8.6	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
NosD	PF05048.13	gi|564289501|ref|YP_008875748.1|	-	2.7e-56	190.5	21.7	1.1e-52	178.7	18.4	2.1	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|564289501|ref|YP_008875748.1|	-	1.3e-26	93.4	22.8	3.6e-19	69.2	5.7	2.4	1	1	1	2	2	2	2	Right	handed	beta	helix	region
DUF1565	PF07602.11	gi|564289501|ref|YP_008875748.1|	-	1.3e-06	28.0	13.2	0.0021	17.4	6.4	2.4	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1565)
Pertactin	PF03212.14	gi|564289501|ref|YP_008875748.1|	-	0.22	11.5	2.6	0.53	10.2	0.2	2.5	2	1	0	2	2	2	0	Pertactin
nos_propeller_2	PF18793.1	gi|564289503|ref|YP_008875750.1|	-	6.4e-30	103.3	0.2	1.8e-29	101.9	0.2	1.8	1	0	0	1	1	1	1	Nitrous	oxide	reductase	propeller	repeat	2
nos_propeller	PF18764.1	gi|564289503|ref|YP_008875750.1|	-	1.1e-29	102.2	0.4	7.5e-29	99.5	0.2	2.4	3	0	0	3	3	3	1	Nitrous	oxide	reductase	propeller	repeat
TAT_signal	PF10518.9	gi|564289503|ref|YP_008875750.1|	-	3.2e-05	23.6	4.9	5.2e-05	22.9	4.9	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
COX2	PF00116.20	gi|564289503|ref|YP_008875750.1|	-	5e-05	23.2	0.0	0.0001	22.1	0.0	1.5	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|564289503|ref|YP_008875750.1|	-	0.0002	21.5	0.0	0.00043	20.4	0.0	1.6	1	0	0	1	1	1	1	Cupredoxin-like	domain
Glyco_transf_36	PF06165.11	gi|564289503|ref|YP_008875750.1|	-	0.056	12.8	0.1	0.11	11.9	0.1	1.4	1	0	0	1	1	1	0	Glycosyltransferase	family	36
Copper-bind	PF00127.20	gi|564289504|ref|YP_008875751.1|	-	6.1e-20	71.5	0.3	1.1e-19	70.7	0.3	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.6	gi|564289504|ref|YP_008875751.1|	-	9.7e-07	28.9	1.1	1.5e-05	25.1	1.1	2.0	1	1	0	1	1	1	1	Cupredoxin-like	domain
TAT_signal	PF10518.9	gi|564289504|ref|YP_008875751.1|	-	0.12	12.3	5.7	0.22	11.4	5.7	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ELFV_dehydrog	PF00208.21	gi|564291317|ref|YP_008875753.1|	-	4.5e-35	121.5	0.2	5.2e-35	121.3	0.2	1.0	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Arginase	PF00491.21	gi|564289506|ref|YP_008875754.1|	-	7e-73	245.6	3.3	8.1e-73	245.3	3.3	1.0	1	0	0	1	1	1	1	Arginase	family
Aminotran_3	PF00202.21	gi|564289507|ref|YP_008875755.1|	-	7.6e-82	275.1	0.0	3e-81	273.2	0.0	1.7	1	1	0	1	1	1	1	Aminotransferase	class-III
SBP_bac_3	PF00497.20	gi|564289508|ref|YP_008875756.1|	-	1.9e-56	191.0	0.0	2.2e-56	190.8	0.0	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Lig_chan-Glu_bd	PF10613.9	gi|564289508|ref|YP_008875756.1|	-	4.8e-07	30.0	0.0	2.4e-06	27.7	0.0	2.2	2	1	0	2	2	2	1	Ligated	ion	channel	L-glutamate-	and	glycine-binding	site
NMT1	PF09084.11	gi|564289508|ref|YP_008875756.1|	-	0.0012	18.8	0.0	0.016	15.2	0.0	2.0	2	0	0	2	2	2	1	NMT1/THI5	like
BPD_transp_1	PF00528.22	gi|564289509|ref|YP_008875757.1|	-	6.7e-21	74.9	7.0	6.7e-21	74.9	7.0	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3169	PF11368.8	gi|564289509|ref|YP_008875757.1|	-	0.72	9.3	4.9	0.44	10.0	1.9	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3169)
MNHE	PF01899.16	gi|564289509|ref|YP_008875757.1|	-	2.3	8.0	7.2	0.86	9.4	4.5	1.8	2	1	0	2	2	2	0	Na+/H+	ion	antiporter	subunit
ABC_tran	PF00005.27	gi|564289510|ref|YP_008875758.1|	-	2.7e-34	118.6	0.0	3.7e-34	118.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289510|ref|YP_008875758.1|	-	4.1e-15	56.4	0.1	5.8e-07	29.6	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564289510|ref|YP_008875758.1|	-	7.1e-09	35.4	0.0	3e-08	33.4	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564289510|ref|YP_008875758.1|	-	7.2e-06	25.6	0.0	1.6e-05	24.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|564289510|ref|YP_008875758.1|	-	8.7e-05	21.5	0.7	0.039	12.8	0.1	2.1	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|564289510|ref|YP_008875758.1|	-	0.0002	21.8	0.3	0.00035	21.0	0.3	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564289510|ref|YP_008875758.1|	-	0.00038	20.4	0.0	0.00063	19.7	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|564289510|ref|YP_008875758.1|	-	0.00055	20.2	0.1	0.001	19.4	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564289510|ref|YP_008875758.1|	-	0.00062	19.5	0.1	0.00092	19.0	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|564289510|ref|YP_008875758.1|	-	0.0014	19.2	0.0	0.0024	18.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.6	gi|564289510|ref|YP_008875758.1|	-	0.003	18.1	0.0	0.0069	16.9	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
AAA_15	PF13175.6	gi|564289510|ref|YP_008875758.1|	-	0.0048	16.7	0.0	0.021	14.6	0.0	1.8	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564289510|ref|YP_008875758.1|	-	0.016	15.4	0.0	0.03	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564289510|ref|YP_008875758.1|	-	0.023	14.3	0.5	0.092	12.3	0.5	2.2	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|564289510|ref|YP_008875758.1|	-	0.024	15.1	0.0	0.15	12.5	0.0	2.4	1	1	1	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.19	gi|564289510|ref|YP_008875758.1|	-	0.043	13.4	0.0	0.07	12.7	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
TK	PF00265.18	gi|564289510|ref|YP_008875758.1|	-	0.047	13.5	0.0	5.7	6.8	0.0	2.2	2	0	0	2	2	2	0	Thymidine	kinase
ATPase_2	PF01637.18	gi|564289510|ref|YP_008875758.1|	-	0.051	13.5	0.0	0.079	12.9	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_5	PF07728.14	gi|564289510|ref|YP_008875758.1|	-	0.052	13.5	0.0	0.13	12.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
APS_kinase	PF01583.20	gi|564289510|ref|YP_008875758.1|	-	0.13	12.2	0.0	0.33	10.8	0.0	1.7	1	0	0	1	1	1	0	Adenylylsulphate	kinase
NACHT	PF05729.12	gi|564289510|ref|YP_008875758.1|	-	0.13	12.2	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
SbcCD_C	PF13558.6	gi|564289510|ref|YP_008875758.1|	-	0.17	12.2	1.2	1.6	9.0	0.3	2.6	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
Rad17	PF03215.15	gi|564289510|ref|YP_008875758.1|	-	0.18	11.7	0.0	0.3	11.0	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_28	PF13521.6	gi|564289510|ref|YP_008875758.1|	-	0.21	11.9	0.4	0.99	9.6	0.1	2.2	3	0	0	3	3	3	0	AAA	domain
AAA_24	PF13479.6	gi|564289510|ref|YP_008875758.1|	-	0.21	11.3	0.0	0.34	10.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|564289510|ref|YP_008875758.1|	-	0.23	10.2	0.1	1.1	8.0	0.0	1.8	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.22	gi|564289511|ref|YP_008875759.1|	-	8.9e-17	61.4	8.0	8.9e-17	61.4	8.0	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
HTH_10	PF04967.12	gi|564289512|ref|YP_008875760.1|	-	1e-19	70.0	0.1	1.7e-19	69.3	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_psq	PF05225.16	gi|564289512|ref|YP_008875760.1|	-	0.00076	19.2	0.0	0.0015	18.2	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_24	PF13412.6	gi|564289512|ref|YP_008875760.1|	-	0.0014	18.1	0.0	0.0028	17.2	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|564289512|ref|YP_008875760.1|	-	0.027	14.5	0.0	0.1	12.7	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564289512|ref|YP_008875760.1|	-	0.029	14.2	0.1	1.3	8.9	0.0	2.9	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564289512|ref|YP_008875760.1|	-	0.066	13.2	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
GntR	PF00392.21	gi|564289512|ref|YP_008875760.1|	-	0.066	12.9	0.0	0.17	11.5	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|564289512|ref|YP_008875760.1|	-	0.075	12.9	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
GerE	PF00196.19	gi|564289512|ref|YP_008875760.1|	-	0.076	12.6	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|564289512|ref|YP_008875760.1|	-	0.11	12.2	0.1	1.5	8.6	0.1	2.3	1	1	0	1	1	1	0	Sigma-70,	region	4
IF2_N	PF04760.15	gi|564289512|ref|YP_008875760.1|	-	0.19	11.6	0.0	0.35	10.7	0.0	1.5	1	0	0	1	1	1	0	Translation	initiation	factor	IF-2,	N-terminal	region
Phage_integrase	PF00589.22	gi|564289513|ref|YP_008875761.1|	-	2.3e-17	63.3	0.0	3.9e-17	62.6	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|564289513|ref|YP_008875761.1|	-	5e-09	36.3	0.0	1.1e-08	35.3	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|564289513|ref|YP_008875761.1|	-	2.6e-06	27.8	0.0	6.9e-06	26.5	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|564289513|ref|YP_008875761.1|	-	0.03	14.7	0.0	0.067	13.5	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
Phage_integr_3	PF16795.5	gi|564289513|ref|YP_008875761.1|	-	0.07	13.0	0.0	0.22	11.4	0.0	1.7	2	0	0	2	2	2	0	Archaeal	phage	integrase
RHH_1	PF01402.21	gi|564289514|ref|YP_008875762.1|	-	0.061	13.3	0.6	0.44	10.6	0.0	2.3	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Glycophorin_A	PF01102.18	gi|564291318|ref|YP_008875763.1|	-	0.09	13.0	0.3	0.091	13.0	0.3	1.1	1	0	0	1	1	1	0	Glycophorin	A
Amidase	PF01425.21	gi|564291318|ref|YP_008875763.1|	-	0.13	11.2	0.0	0.15	11.0	0.0	1.0	1	0	0	1	1	1	0	Amidase
CorA	PF01544.18	gi|564289515|ref|YP_008875765.1|	-	0.13	11.6	0.6	0.16	11.3	0.6	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF3018	PF11455.8	gi|564289515|ref|YP_008875765.1|	-	0.15	12.0	0.3	0.15	12.0	0.3	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3018)
DUF4407	PF14362.6	gi|564289515|ref|YP_008875765.1|	-	0.31	10.3	4.5	0.33	10.2	4.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
HAMP	PF00672.25	gi|564289516|ref|YP_008875766.1|	-	2.1e-09	37.6	6.7	2.9e-06	27.6	0.1	3.5	3	0	0	3	3	3	2	HAMP	domain
DUF948	PF06103.11	gi|564289516|ref|YP_008875766.1|	-	0.00097	19.3	9.8	0.12	12.6	2.5	4.1	2	1	1	3	3	3	3	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|564289516|ref|YP_008875766.1|	-	0.034	14.2	10.4	0.44	10.6	1.2	3.6	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|564289516|ref|YP_008875766.1|	-	0.047	13.7	0.3	0.047	13.7	0.3	3.9	2	1	3	5	5	5	0	Laminin	Domain	II
CENP-K	PF11802.8	gi|564289516|ref|YP_008875766.1|	-	0.16	11.5	4.5	0.041	13.5	0.6	1.8	1	1	1	2	2	2	0	Centromere-associated	protein	K
Dynamin_M	PF01031.20	gi|564289516|ref|YP_008875766.1|	-	0.16	11.1	3.4	0.18	11.0	2.3	1.6	1	1	0	1	1	1	0	Dynamin	central	region
Mce4_CUP1	PF11887.8	gi|564289516|ref|YP_008875766.1|	-	0.19	11.1	5.4	0.97	8.8	4.5	2.3	1	1	1	2	2	2	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
CorA	PF01544.18	gi|564289516|ref|YP_008875766.1|	-	0.21	10.9	12.8	0.27	10.5	3.1	2.9	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
BORCS8	PF10167.9	gi|564289516|ref|YP_008875766.1|	-	0.61	10.0	3.2	1.9	8.4	0.1	3.1	4	0	0	4	4	4	0	BLOC-1-related	complex	sub-unit	8
IFT57	PF10498.9	gi|564289516|ref|YP_008875766.1|	-	0.73	8.7	12.2	0.072	12.0	0.4	2.8	2	1	1	3	3	3	0	Intra-flagellar	transport	protein	57
Sec34	PF04136.15	gi|564289516|ref|YP_008875766.1|	-	0.78	9.6	7.7	6.6	6.6	0.3	3.0	2	1	1	3	3	3	0	Sec34-like	family
Fzo_mitofusin	PF04799.13	gi|564289516|ref|YP_008875766.1|	-	1	8.9	7.8	3	7.4	0.4	3.3	3	1	1	4	4	4	0	fzo-like	conserved	region
WXG100	PF06013.12	gi|564289516|ref|YP_008875766.1|	-	1.1	9.5	14.4	17	5.7	0.0	5.1	4	1	0	4	4	4	0	Proteins	of	100	residues	with	WXG
LUC7	PF03194.15	gi|564289516|ref|YP_008875766.1|	-	5.2	6.7	10.9	22	4.6	0.1	2.8	1	1	0	2	2	2	0	LUC7	N_terminus
Peripla_BP_6	PF13458.6	gi|564289517|ref|YP_008875767.1|	-	2.9e-57	194.9	5.5	3.7e-57	194.5	5.5	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564289517|ref|YP_008875767.1|	-	3.3e-16	59.2	1.1	6.7e-16	58.2	1.1	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.28	gi|564289517|ref|YP_008875767.1|	-	1.1e-06	28.0	0.0	2.8e-06	26.7	0.0	1.5	2	0	0	2	2	2	1	Receptor	family	ligand	binding	region
PfkB	PF00294.24	gi|564289518|ref|YP_008875769.1|	-	3.5e-44	151.3	0.1	4.2e-44	151.1	0.1	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
PK	PF00224.21	gi|564289519|ref|YP_008875770.1|	-	1.1e-111	373.1	4.2	1.9e-111	372.3	4.2	1.3	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.16	gi|564289519|ref|YP_008875770.1|	-	1.1e-28	99.8	0.6	2.7e-28	98.6	0.6	1.7	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
PEP-utilizers	PF00391.23	gi|564289519|ref|YP_008875770.1|	-	4.4e-12	45.5	0.2	4.4e-12	45.5	0.2	3.5	5	0	0	5	5	5	1	PEP-utilising	enzyme,	mobile	domain
HpcH_HpaI	PF03328.14	gi|564289519|ref|YP_008875770.1|	-	0.035	13.2	1.6	0.1	11.7	0.2	2.1	1	1	0	2	2	2	0	HpcH/HpaI	aldolase/citrate	lyase	family
T2SSF	PF00482.23	gi|564289519|ref|YP_008875770.1|	-	0.21	11.5	1.1	13	5.8	0.2	3.3	2	1	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	F
LpxI_C	PF06230.11	gi|564289519|ref|YP_008875770.1|	-	0.53	10.1	3.4	3.8	7.4	1.2	2.9	2	1	0	2	2	2	0	LpxI	C-terminal	domain
ROK	PF00480.20	gi|564289520|ref|YP_008875771.1|	-	7.9e-51	173.3	0.1	9.4e-51	173.0	0.1	1.0	1	0	0	1	1	1	1	ROK	family
FGGY_N	PF00370.21	gi|564289520|ref|YP_008875771.1|	-	1.3e-05	24.9	0.1	4.6e-05	23.1	0.1	1.8	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
BcrAD_BadFG	PF01869.20	gi|564289520|ref|YP_008875771.1|	-	2.8e-05	23.8	0.1	8.2e-05	22.2	0.1	1.7	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
AAA_16	PF13191.6	gi|564289521|ref|YP_008875772.1|	-	1.8e-09	38.2	0.4	7.9e-09	36.1	0.0	2.2	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289521|ref|YP_008875772.1|	-	2.6e-07	31.0	0.0	7.4e-07	29.5	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
TniB	PF05621.11	gi|564289521|ref|YP_008875772.1|	-	2.3e-05	23.9	0.0	4.2e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|564289521|ref|YP_008875772.1|	-	0.00016	21.7	0.0	0.00034	20.6	0.0	1.5	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_assoc_2	PF16193.5	gi|564289521|ref|YP_008875772.1|	-	0.0093	16.3	0.2	0.023	15.0	0.2	1.6	1	0	0	1	1	1	1	AAA	C-terminal	domain
DUF815	PF05673.13	gi|564289521|ref|YP_008875772.1|	-	0.044	12.9	0.0	0.096	11.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA	PF00004.29	gi|564289521|ref|YP_008875772.1|	-	0.064	13.7	0.0	0.15	12.4	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RNA_helicase	PF00910.22	gi|564289521|ref|YP_008875772.1|	-	0.068	13.6	0.0	0.12	12.7	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
PIGA	PF08288.12	gi|564289521|ref|YP_008875772.1|	-	0.096	13.3	0.0	0.18	12.4	0.0	1.4	1	0	0	1	1	1	0	PIGA	(GPI	anchor	biosynthesis)
AAA_19	PF13245.6	gi|564289521|ref|YP_008875772.1|	-	0.12	12.7	0.0	0.27	11.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|564289521|ref|YP_008875772.1|	-	0.13	11.7	0.0	0.25	10.8	0.0	1.4	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
DUF2530	PF10745.9	gi|564289522|ref|YP_008875773.1|	-	1.4	9.2	0.0	1.4	9.2	0.0	3.8	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2530)
FGGY_N	PF00370.21	gi|564289523|ref|YP_008875774.1|	-	6.8e-75	251.8	0.0	8.9e-75	251.4	0.0	1.1	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FGGY_C	PF02782.16	gi|564289523|ref|YP_008875774.1|	-	9.5e-58	195.2	1.6	1.6e-57	194.5	1.6	1.4	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
BcrAD_BadFG	PF01869.20	gi|564289523|ref|YP_008875774.1|	-	0.00085	18.9	0.3	0.029	13.8	0.0	2.2	2	0	0	2	2	2	2	BadF/BadG/BcrA/BcrD	ATPase	family
MCPsignal	PF00015.21	gi|564289524|ref|YP_008875775.1|	-	4.1e-42	143.9	39.4	2e-41	141.7	19.1	3.5	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
SBP_bac_8	PF13416.6	gi|564289524|ref|YP_008875775.1|	-	4.6e-38	131.7	0.0	6e-37	128.0	0.0	2.4	2	1	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564289524|ref|YP_008875775.1|	-	7.2e-21	75.4	0.0	1.1e-20	74.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF1664	PF07889.12	gi|564289524|ref|YP_008875775.1|	-	8.2e-07	29.1	24.5	0.0023	18.0	4.8	5.1	4	1	1	5	5	5	2	Protein	of	unknown	function	(DUF1664)
DUF948	PF06103.11	gi|564289524|ref|YP_008875775.1|	-	2.3e-06	27.7	32.1	0.00011	22.4	4.2	5.4	1	1	3	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
Syntaxin-6_N	PF09177.11	gi|564289524|ref|YP_008875775.1|	-	0.0032	18.0	6.1	0.0032	18.0	6.1	5.5	4	2	1	5	5	4	1	Syntaxin	6,	N-terminal
Filament	PF00038.21	gi|564289524|ref|YP_008875775.1|	-	0.0045	16.6	22.2	0.019	14.6	6.0	3.1	2	2	1	3	3	3	2	Intermediate	filament	protein
Med9	PF07544.13	gi|564289524|ref|YP_008875775.1|	-	0.02	14.9	0.0	0.02	14.9	0.0	2.9	3	1	0	3	3	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
EzrA	PF06160.12	gi|564289524|ref|YP_008875775.1|	-	0.029	12.6	16.8	0.061	11.5	0.3	2.8	3	0	0	3	3	3	0	Septation	ring	formation	regulator,	EzrA
Seryl_tRNA_N	PF02403.22	gi|564289524|ref|YP_008875775.1|	-	0.029	14.6	23.4	0.024	14.8	1.9	4.9	3	2	1	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
TMPIT	PF07851.13	gi|564289524|ref|YP_008875775.1|	-	0.052	12.8	6.2	2.1	7.5	0.1	2.6	2	0	0	2	2	2	0	TMPIT-like	protein
Prp19	PF08606.11	gi|564289524|ref|YP_008875775.1|	-	0.06	13.3	0.4	0.3	11.1	0.1	2.4	2	0	0	2	2	1	0	Prp19/Pso4-like
Troponin	PF00992.20	gi|564289524|ref|YP_008875775.1|	-	0.07	13.4	4.3	1.2	9.4	1.6	2.8	2	0	0	2	2	2	0	Troponin
Lzipper-MIP1	PF14389.6	gi|564289524|ref|YP_008875775.1|	-	0.082	13.2	1.9	0.22	11.8	0.1	2.7	3	0	0	3	3	1	0	Leucine-zipper	of	ternary	complex	factor	MIP1
DUF2959	PF11172.8	gi|564289524|ref|YP_008875775.1|	-	0.14	12.3	26.6	0.019	15.1	7.3	4.4	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF2959)
Dynein_C	PF18199.1	gi|564289524|ref|YP_008875775.1|	-	0.17	11.1	1.0	0.37	9.9	1.0	1.5	1	0	0	1	1	1	0	Dynein	heavy	chain	C-terminal	domain
BLOC1_2	PF10046.9	gi|564289524|ref|YP_008875775.1|	-	0.18	12.2	25.0	1.3	9.3	2.7	6.0	4	2	2	6	6	6	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Atg14	PF10186.9	gi|564289524|ref|YP_008875775.1|	-	0.38	9.8	7.7	0.96	8.5	0.6	3.0	2	1	1	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Prominin	PF05478.11	gi|564289524|ref|YP_008875775.1|	-	0.58	8.1	12.5	0.81	7.6	7.3	2.3	1	1	1	2	2	2	0	Prominin
Ferritin	PF00210.24	gi|564289524|ref|YP_008875775.1|	-	0.74	9.7	6.5	0.37	10.7	2.3	2.6	1	1	0	2	2	2	0	Ferritin-like	domain
Vps51	PF08700.11	gi|564289524|ref|YP_008875775.1|	-	0.85	9.7	10.6	3.6	7.7	0.2	4.8	5	1	0	5	5	5	0	Vps51/Vps67
DUF4407	PF14362.6	gi|564289524|ref|YP_008875775.1|	-	0.95	8.8	33.8	2.3	7.5	14.1	3.2	1	1	1	2	2	1	0	Domain	of	unknown	function	(DUF4407)
Laminin_II	PF06009.12	gi|564289524|ref|YP_008875775.1|	-	1.5	8.8	33.1	0.47	10.5	3.2	4.7	3	2	2	5	5	5	0	Laminin	Domain	II
CorA	PF01544.18	gi|564289524|ref|YP_008875775.1|	-	1.6	8.0	13.1	4.7	6.4	1.2	3.0	2	1	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
RPW8	PF05659.11	gi|564289524|ref|YP_008875775.1|	-	1.7	8.3	4.1	30	4.3	0.1	3.7	2	1	1	3	3	3	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Spc7	PF08317.11	gi|564289524|ref|YP_008875775.1|	-	1.8	7.4	26.4	0.11	11.4	1.3	3.5	3	1	0	3	3	3	0	Spc7	kinetochore	protein
TRPM_tetra	PF16519.5	gi|564289524|ref|YP_008875775.1|	-	3.3	7.9	12.9	3.8	7.7	1.8	4.7	4	1	0	5	5	4	0	Tetramerisation	domain	of	TRPM
APG6_N	PF17675.1	gi|564289524|ref|YP_008875775.1|	-	3.7	8.1	28.4	6.5	7.3	4.7	4.4	2	1	2	4	4	4	0	Apg6	coiled-coil	region
IFT57	PF10498.9	gi|564289524|ref|YP_008875775.1|	-	4.1	6.3	18.3	0.59	9.1	3.1	3.0	2	2	0	2	2	2	0	Intra-flagellar	transport	protein	57
Occludin_ELL	PF07303.13	gi|564289524|ref|YP_008875775.1|	-	4.8	8.0	7.1	1e+02	3.7	0.1	5.1	4	2	2	7	7	5	0	Occludin	homology	domain
DASH_Dam1	PF08653.10	gi|564289524|ref|YP_008875775.1|	-	4.9	7.0	4.6	29	4.5	0.0	4.1	4	1	0	4	4	4	0	DASH	complex	subunit	Dam1
BAR_2	PF10455.9	gi|564289524|ref|YP_008875775.1|	-	5.2	6.1	13.3	0.41	9.7	0.2	2.7	3	0	0	3	3	3	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
Baculo_PEP_C	PF04513.12	gi|564289524|ref|YP_008875775.1|	-	5.7	7.0	27.2	2.1	8.4	0.2	5.2	3	1	2	6	6	6	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
NPV_P10	PF05531.12	gi|564289524|ref|YP_008875775.1|	-	6	7.4	29.3	12	6.4	0.1	6.4	5	1	2	7	7	7	0	Nucleopolyhedrovirus	P10	protein
YkyA	PF10368.9	gi|564289524|ref|YP_008875775.1|	-	6.2	6.5	19.7	3.1	7.4	0.2	3.8	2	2	1	3	3	3	0	Putative	cell-wall	binding	lipoprotein
Mod_r	PF07200.13	gi|564289524|ref|YP_008875775.1|	-	7.6	6.6	18.4	47	4.1	0.2	4.6	2	1	1	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
Not3	PF04065.15	gi|564289524|ref|YP_008875775.1|	-	7.6	5.9	20.3	4.9	6.5	1.2	3.4	1	1	2	3	3	3	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
DUF4200	PF13863.6	gi|564289524|ref|YP_008875775.1|	-	7.8	6.9	15.4	6.5	7.2	0.3	4.4	2	1	2	4	4	4	0	Domain	of	unknown	function	(DUF4200)
Fib_alpha	PF08702.10	gi|564289524|ref|YP_008875775.1|	-	10	6.3	13.4	26	5.0	0.7	3.6	2	2	2	4	4	4	0	Fibrinogen	alpha/beta	chain	family
DAO	PF01266.24	gi|564289525|ref|YP_008875776.1|	-	1e-53	183.2	0.9	1.7e-53	182.5	0.9	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Fer2_BFD	PF04324.15	gi|564289525|ref|YP_008875776.1|	-	1.1e-10	41.7	1.1	3e-10	40.3	1.1	1.8	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_2	PF07992.14	gi|564289525|ref|YP_008875776.1|	-	1.4e-08	34.4	0.7	6e-08	32.3	0.7	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564289525|ref|YP_008875776.1|	-	1.6e-08	34.0	6.0	2.8e-07	30.0	6.0	2.1	1	1	0	1	1	1	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564289525|ref|YP_008875776.1|	-	1.9e-06	27.4	0.9	0.015	14.6	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
3HCDH_N	PF02737.18	gi|564289525|ref|YP_008875776.1|	-	0.00059	19.8	0.3	0.0012	18.8	0.3	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|564289525|ref|YP_008875776.1|	-	0.0035	17.5	3.0	0.0071	16.5	0.6	2.7	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
DAO_C	PF16901.5	gi|564289525|ref|YP_008875776.1|	-	0.0053	16.6	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	C-terminal	domain	of	alpha-glycerophosphate	oxidase
Pyr_redox	PF00070.27	gi|564289525|ref|YP_008875776.1|	-	0.012	16.2	2.7	0.029	14.9	0.5	2.6	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564289525|ref|YP_008875776.1|	-	0.016	14.3	1.5	0.74	8.8	0.2	2.3	2	0	0	2	2	2	0	Lycopene	cyclase	protein
ApbA	PF02558.16	gi|564289525|ref|YP_008875776.1|	-	0.075	12.7	0.3	0.17	11.5	0.3	1.6	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
FAD_oxidored	PF12831.7	gi|564289525|ref|YP_008875776.1|	-	0.092	12.1	6.6	0.67	9.2	6.5	2.2	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|564289525|ref|YP_008875776.1|	-	0.11	12.5	3.5	6.4	6.8	0.4	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
HI0933_like	PF03486.14	gi|564289525|ref|YP_008875776.1|	-	0.21	10.3	1.2	0.4	9.3	0.2	1.8	2	0	0	2	2	2	0	HI0933-like	protein
GIDA	PF01134.22	gi|564289525|ref|YP_008875776.1|	-	0.37	9.8	3.4	2.5	7.1	1.5	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.6	gi|564289525|ref|YP_008875776.1|	-	0.41	9.9	1.9	0.89	8.8	0.5	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564289526|ref|YP_008875777.1|	-	1.5e-39	136.3	0.2	1.7e-39	136.1	0.2	1.0	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|564289526|ref|YP_008875777.1|	-	5.1e-07	29.6	4.4	1.3e-05	25.0	4.4	2.2	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|564289526|ref|YP_008875777.1|	-	2.9e-06	26.9	0.9	1.2e-05	24.9	1.0	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564289526|ref|YP_008875777.1|	-	9.5e-06	25.0	0.2	0.00043	19.6	0.2	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564289526|ref|YP_008875777.1|	-	4.7e-05	22.7	2.6	5.2e-05	22.5	0.4	2.2	3	0	0	3	3	3	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|564289526|ref|YP_008875777.1|	-	0.0002	20.2	0.0	0.04	12.6	0.1	2.3	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|564289526|ref|YP_008875777.1|	-	0.0013	18.1	0.3	0.0044	16.3	0.6	1.7	2	0	0	2	2	2	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|564289526|ref|YP_008875777.1|	-	0.0015	17.9	0.6	0.0028	17.0	0.6	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.27	gi|564289526|ref|YP_008875777.1|	-	0.0068	16.9	0.1	0.035	14.7	0.2	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|564289526|ref|YP_008875777.1|	-	0.011	15.9	1.0	0.027	14.7	1.0	1.6	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.6	gi|564289526|ref|YP_008875777.1|	-	0.058	13.8	0.1	0.15	12.5	0.0	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|564289526|ref|YP_008875777.1|	-	0.15	11.9	0.2	0.23	11.3	0.2	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
CCG	PF02754.16	gi|564289527|ref|YP_008875778.1|	-	1.5e-21	76.4	1.8	2.6e-10	40.4	0.1	2.6	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.6	gi|564289527|ref|YP_008875778.1|	-	6.7e-10	39.3	14.4	3.3e-09	37.0	6.9	3.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|564289527|ref|YP_008875778.1|	-	1.2e-06	29.0	6.0	1.2e-06	29.0	6.0	3.5	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564289527|ref|YP_008875778.1|	-	0.00011	22.8	9.9	0.00011	22.8	9.9	3.1	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564289527|ref|YP_008875778.1|	-	0.0011	19.1	17.4	0.011	15.8	12.7	3.7	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
DUF3390	PF11870.8	gi|564289527|ref|YP_008875778.1|	-	0.0021	18.4	0.1	0.0039	17.5	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3390)
Fer4_9	PF13187.6	gi|564289527|ref|YP_008875778.1|	-	0.0024	18.0	11.2	0.0024	18.0	11.2	3.3	3	1	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564289527|ref|YP_008875778.1|	-	0.23	12.4	16.0	0.41	11.6	10.8	3.7	4	1	1	5	5	5	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|564289527|ref|YP_008875778.1|	-	2.7	8.2	13.9	1.5	9.0	1.2	3.3	4	0	0	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|564289527|ref|YP_008875778.1|	-	7.9	6.7	13.5	0.48	10.6	0.9	3.5	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Usp	PF00582.26	gi|564289528|ref|YP_008875779.1|	-	8.8e-19	68.4	0.6	1.1e-18	68.1	0.6	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
PEPcase	PF00311.17	gi|564289529|ref|YP_008875780.1|	-	3.3e-242	806.0	0.3	4.4e-242	805.6	0.3	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase_2	PF14010.6	gi|564289529|ref|YP_008875780.1|	-	0.0007	18.2	0.1	0.0021	16.7	0.0	1.8	2	0	0	2	2	2	1	Phosphoenolpyruvate	carboxylase
COMMD1_N	PF17221.3	gi|564289529|ref|YP_008875780.1|	-	0.096	13.0	0.2	26	5.2	0.0	3.6	3	0	0	3	3	3	0	COMMD1	N-terminal	domain
Activator-TraM	PF11657.8	gi|564289529|ref|YP_008875780.1|	-	0.6	9.9	5.7	0.17	11.7	0.5	2.6	3	0	0	3	3	3	0	Transcriptional	activator	TraM
FUSC	PF04632.12	gi|564289529|ref|YP_008875780.1|	-	1.3	7.5	5.9	3.3	6.1	5.9	1.7	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
HTH_10	PF04967.12	gi|564289530|ref|YP_008875781.1|	-	1.5e-16	60.0	0.0	2.8e-16	59.0	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564289530|ref|YP_008875781.1|	-	0.0051	16.7	2.9	0.0051	16.7	2.9	2.1	1	1	1	2	2	2	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|564289530|ref|YP_008875781.1|	-	0.0089	15.9	0.0	0.044	13.7	0.0	2.2	2	1	0	2	2	2	1	MarR	family
UPF0122	PF04297.14	gi|564289530|ref|YP_008875781.1|	-	0.086	13.1	0.0	0.3	11.3	0.0	1.8	1	1	1	2	2	2	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_5	PF01022.20	gi|564289530|ref|YP_008875781.1|	-	0.089	12.7	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF434	PF04256.12	gi|564289530|ref|YP_008875781.1|	-	0.18	11.5	0.0	6.9	6.4	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF434)
Yip1	PF04893.17	gi|564291321|ref|YP_008875782.1|	-	8.7	6.0	15.0	83	2.8	15.0	2.0	1	1	0	1	1	1	0	Yip1	domain
Peripla_BP_6	PF13458.6	gi|564289531|ref|YP_008875783.1|	-	1.9e-69	235.0	12.0	2.4e-69	234.6	12.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564289531|ref|YP_008875783.1|	-	1.5e-15	57.1	1.5	3e-15	56.1	1.5	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ABC_tran	PF00005.27	gi|564289532|ref|YP_008875784.1|	-	2.6e-26	92.8	0.0	3.4e-26	92.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
BCA_ABC_TP_C	PF12399.8	gi|564289532|ref|YP_008875784.1|	-	8.5e-11	41.5	0.6	2.3e-10	40.1	0.4	1.9	2	0	0	2	2	2	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_21	PF13304.6	gi|564289532|ref|YP_008875784.1|	-	1.9e-07	31.2	0.8	0.0053	16.6	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_23	PF13476.6	gi|564289532|ref|YP_008875784.1|	-	8.6e-05	23.1	0.0	9.8e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564289532|ref|YP_008875784.1|	-	0.00019	21.0	0.0	0.00028	20.4	0.0	1.1	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564289532|ref|YP_008875784.1|	-	0.0011	19.2	0.3	0.043	14.1	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289532|ref|YP_008875784.1|	-	0.003	17.5	0.0	0.0054	16.7	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|564289532|ref|YP_008875784.1|	-	0.003	17.6	0.1	0.011	15.9	0.1	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|564289532|ref|YP_008875784.1|	-	0.0078	16.6	0.3	0.015	15.6	0.3	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564289532|ref|YP_008875784.1|	-	0.02	14.6	0.1	0.038	13.7	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.6	gi|564289532|ref|YP_008875784.1|	-	0.045	13.4	0.0	0.066	12.9	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
MukB	PF04310.12	gi|564289532|ref|YP_008875784.1|	-	0.059	13.2	0.0	0.09	12.6	0.0	1.3	1	0	0	1	1	1	0	MukB	N-terminal
AAA_30	PF13604.6	gi|564289532|ref|YP_008875784.1|	-	0.071	12.8	0.0	0.12	12.1	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|564289532|ref|YP_008875784.1|	-	0.12	12.8	0.1	0.98	9.8	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|564289532|ref|YP_008875784.1|	-	0.17	11.5	0.0	0.33	10.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SRCR	PF00530.18	gi|564289532|ref|YP_008875784.1|	-	0.22	12.1	0.0	0.34	11.4	0.0	1.4	1	0	0	1	1	1	0	Scavenger	receptor	cysteine-rich	domain
ABC_tran	PF00005.27	gi|564289533|ref|YP_008875785.1|	-	4.6e-29	101.7	0.0	6.1e-29	101.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289533|ref|YP_008875785.1|	-	9.3e-09	35.5	0.1	0.0014	18.5	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|564289533|ref|YP_008875785.1|	-	0.0054	17.0	0.0	0.013	15.7	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564289533|ref|YP_008875785.1|	-	0.011	16.1	0.3	0.017	15.5	0.3	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564289533|ref|YP_008875785.1|	-	0.023	14.4	1.0	0.092	12.4	1.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|564289533|ref|YP_008875785.1|	-	0.025	14.3	0.0	0.045	13.5	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|564289533|ref|YP_008875785.1|	-	0.052	13.5	0.1	0.15	12.0	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
SMC_N	PF02463.19	gi|564289533|ref|YP_008875785.1|	-	0.053	13.0	0.1	7.5	5.9	0.1	2.1	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
NTPase_1	PF03266.15	gi|564289533|ref|YP_008875785.1|	-	0.058	13.3	0.1	0.52	10.2	0.1	2.0	2	0	0	2	2	2	0	NTPase
AAA_25	PF13481.6	gi|564289533|ref|YP_008875785.1|	-	0.085	12.4	0.2	0.27	10.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|564289533|ref|YP_008875785.1|	-	0.096	11.7	0.0	0.13	11.3	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF3584	PF12128.8	gi|564289533|ref|YP_008875785.1|	-	0.096	10.2	0.2	0.12	9.8	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
NB-ARC	PF00931.22	gi|564289533|ref|YP_008875785.1|	-	0.12	11.6	0.0	0.19	10.9	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_23	PF13476.6	gi|564289533|ref|YP_008875785.1|	-	0.12	12.9	0.0	0.17	12.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289533|ref|YP_008875785.1|	-	0.18	11.7	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_7	PF12775.7	gi|564289533|ref|YP_008875785.1|	-	0.24	10.9	0.0	0.36	10.3	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
BPD_transp_2	PF02653.16	gi|564289534|ref|YP_008875786.1|	-	1.3e-38	132.7	40.4	1.7e-38	132.3	40.4	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF485	PF04341.12	gi|564289534|ref|YP_008875786.1|	-	0.059	13.3	0.2	0.059	13.3	0.2	4.3	5	1	1	6	6	6	0	Protein	of	unknown	function,	DUF485
BPD_transp_2	PF02653.16	gi|564289535|ref|YP_008875787.1|	-	4e-31	108.2	28.0	6e-31	107.6	28.0	1.3	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Abhydrolase_1	PF00561.20	gi|564289536|ref|YP_008875788.1|	-	4.9e-25	88.6	0.0	2.7e-17	63.3	0.0	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|564289536|ref|YP_008875788.1|	-	5.8e-20	72.8	0.3	6.9e-20	72.6	0.3	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|564289536|ref|YP_008875788.1|	-	5.8e-17	61.8	0.0	7.3e-09	35.2	0.0	2.1	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Abhydrolase_4	PF08386.10	gi|564289536|ref|YP_008875788.1|	-	3.1e-07	30.4	0.0	6e-07	29.5	0.0	1.5	1	0	0	1	1	1	1	TAP-like	protein
Abhydrolase_5	PF12695.7	gi|564289536|ref|YP_008875788.1|	-	5.4e-06	26.3	0.0	0.14	12.0	0.0	2.4	3	0	0	3	3	3	2	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|564289536|ref|YP_008875788.1|	-	0.00014	21.4	0.0	0.0013	18.3	0.0	2.2	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
UPF0227	PF05728.12	gi|564289536|ref|YP_008875788.1|	-	0.00015	21.7	0.0	0.27	11.1	0.0	2.3	2	0	0	2	2	2	2	Uncharacterised	protein	family	(UPF0227)
Ndr	PF03096.14	gi|564289536|ref|YP_008875788.1|	-	0.0027	16.5	0.0	0.0034	16.1	0.0	1.2	1	0	0	1	1	1	1	Ndr	family
DUF915	PF06028.11	gi|564289536|ref|YP_008875788.1|	-	0.014	14.7	0.0	0.022	14.1	0.0	1.3	1	0	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
Abhydrolase_2	PF02230.16	gi|564289536|ref|YP_008875788.1|	-	0.036	13.9	0.1	0.43	10.4	0.0	2.4	2	1	0	2	2	2	0	Phospholipase/Carboxylesterase
FSH1	PF03959.13	gi|564289536|ref|YP_008875788.1|	-	0.042	13.5	0.0	0.093	12.4	0.0	1.5	2	0	0	2	2	2	0	Serine	hydrolase	(FSH1)
DLH	PF01738.18	gi|564289536|ref|YP_008875788.1|	-	0.097	12.2	0.0	4.3	6.8	0.0	2.2	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
AMP-binding	PF00501.28	gi|564289537|ref|YP_008875789.1|	-	3.2e-78	263.2	0.7	6e-78	262.3	0.7	1.4	1	1	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564289537|ref|YP_008875789.1|	-	7e-13	49.4	0.0	1.4e-12	48.4	0.0	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
PAS_4	PF08448.10	gi|564289538|ref|YP_008875790.1|	-	7.1e-25	87.4	2.4	2.1e-11	44.1	0.3	2.9	2	0	0	2	2	2	2	PAS	fold
PAS_3	PF08447.12	gi|564289538|ref|YP_008875790.1|	-	6.4e-23	80.9	0.0	3.4e-17	62.5	0.0	2.6	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|564289538|ref|YP_008875790.1|	-	4e-18	65.6	0.0	2.8e-08	34.0	0.0	3.4	2	1	1	3	3	3	2	PAS	domain
PAS	PF00989.25	gi|564289538|ref|YP_008875790.1|	-	1.1e-13	51.2	0.0	7.9e-06	25.9	0.1	3.0	2	1	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|564289538|ref|YP_008875790.1|	-	1.2e-13	51.5	0.1	2.7e-13	50.4	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564289538|ref|YP_008875790.1|	-	9.8e-13	47.9	1.5	9.8e-13	47.9	1.5	2.5	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
Response_reg	PF00072.24	gi|564289538|ref|YP_008875790.1|	-	1.1e-06	28.8	0.0	2.8e-06	27.5	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_8	PF13188.7	gi|564289538|ref|YP_008875790.1|	-	0.00064	19.7	1.5	0.056	13.5	0.0	3.3	3	0	0	3	3	3	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|564289538|ref|YP_008875790.1|	-	0.14	12.4	0.0	0.46	10.8	0.0	1.9	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
MR_MLE_C	PF13378.6	gi|564289539|ref|YP_008875791.1|	-	4.7e-54	183.3	0.5	6.8e-54	182.7	0.5	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564289539|ref|YP_008875791.1|	-	3.2e-14	53.1	0.0	7.5e-14	51.9	0.0	1.6	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
SBP_bac_11	PF13531.6	gi|564289539|ref|YP_008875791.1|	-	0.18	11.6	0.0	0.26	11.0	0.0	1.3	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
NosD	PF05048.13	gi|564289540|ref|YP_008875792.1|	-	4.7e-12	45.7	1.9	2.6e-05	23.6	0.5	2.1	1	1	1	2	2	2	2	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|564289540|ref|YP_008875792.1|	-	9.9e-10	38.5	5.3	7.5e-05	22.6	0.4	2.4	1	1	1	2	2	2	2	Right	handed	beta	helix	region
DUF1565	PF07602.11	gi|564289540|ref|YP_008875792.1|	-	0.00013	21.4	5.5	0.0016	17.8	0.4	2.6	1	1	0	2	2	2	2	Protein	of	unknown	function	(DUF1565)
DUF5123	PF17161.4	gi|564289540|ref|YP_008875792.1|	-	0.00071	20.6	5.1	0.048	14.7	0.1	3.1	3	0	0	3	3	3	2	Domain	of	unknown	function	(DUF5123)
Bac_rhamnosid_N	PF08531.10	gi|564289540|ref|YP_008875792.1|	-	0.073	12.9	4.0	0.3	10.9	0.4	2.6	1	1	1	2	2	2	0	Alpha-L-rhamnosidase	N-terminal	domain
CBM39	PF15886.5	gi|564289540|ref|YP_008875792.1|	-	0.53	10.2	3.9	1.4	8.8	0.3	3.5	2	2	1	3	3	3	0	Carbohydrate	binding	domain	(family	32)
ResIII	PF04851.15	gi|564289541|ref|YP_008875793.1|	-	1.2e-24	87.3	0.0	7.5e-24	84.6	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
XPB_DRD	PF18458.1	gi|564289541|ref|YP_008875793.1|	-	1.1e-20	73.2	1.3	3.3e-20	71.7	1.3	1.9	1	0	0	1	1	1	1	Xeroderma	pigmentosum	group	B	helicase	damage	recognition	domain
ERCC3_RAD25_C	PF16203.5	gi|564289541|ref|YP_008875793.1|	-	5.7e-20	71.6	0.1	7.8e-20	71.1	0.1	1.1	1	0	0	1	1	1	1	ERCC3/RAD25/XPB	C-terminal	helicase
Helicase_C	PF00271.31	gi|564289541|ref|YP_008875793.1|	-	3.1e-15	56.5	0.0	1.8e-14	54.0	0.1	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|564289541|ref|YP_008875793.1|	-	1.7e-08	34.4	0.0	1e-07	31.9	0.0	2.2	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C_2	PF13307.6	gi|564289541|ref|YP_008875793.1|	-	0.016	15.4	0.0	3.8	7.6	0.0	2.7	3	0	0	3	3	3	0	Helicase	C-terminal	domain
DUF790	PF05626.11	gi|564289542|ref|YP_008875794.1|	-	2.6e-129	431.4	0.0	6.5e-129	430.0	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF790)
NTP_transf_5	PF14907.6	gi|564289543|ref|YP_008875795.1|	-	7e-65	219.1	0.0	8.8e-65	218.8	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
Hpr_kinase_C	PF07475.12	gi|564289544|ref|YP_008875796.1|	-	1.5e-06	27.9	0.1	2.3e-06	27.2	0.1	1.2	1	0	0	1	1	1	1	HPr	Serine	kinase	C-terminal	domain
AAA_29	PF13555.6	gi|564289544|ref|YP_008875796.1|	-	0.037	13.8	0.0	0.072	12.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATPase	PF06745.13	gi|564289544|ref|YP_008875796.1|	-	0.052	12.9	0.0	0.088	12.1	0.0	1.3	1	0	0	1	1	1	0	KaiC
AAA_16	PF13191.6	gi|564289544|ref|YP_008875796.1|	-	0.054	13.9	0.0	0.1	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
PEPCK_ATP	PF01293.20	gi|564289544|ref|YP_008875796.1|	-	0.076	11.7	0.0	0.1	11.2	0.0	1.1	1	0	0	1	1	1	0	Phosphoenolpyruvate	carboxykinase
ABC_tran	PF00005.27	gi|564289544|ref|YP_008875796.1|	-	0.088	13.3	0.0	0.15	12.6	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
RsgA_GTPase	PF03193.16	gi|564289544|ref|YP_008875796.1|	-	0.12	12.3	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	RsgA	GTPase
AAA_7	PF12775.7	gi|564289544|ref|YP_008875796.1|	-	0.14	11.6	0.0	0.22	11.0	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Transglut_core3	PF13471.6	gi|564289545|ref|YP_008875798.1|	-	8.8e-18	64.3	0.0	1.3e-17	63.8	0.0	1.4	1	1	0	1	1	1	1	Transglutaminase-like	superfamily
PqqD	PF05402.12	gi|564289546|ref|YP_008875799.1|	-	2.5e-15	56.5	0.1	3.2e-15	56.2	0.1	1.1	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
DUF3895	PF13034.6	gi|564289546|ref|YP_008875799.1|	-	0.1	12.6	0.0	7.6	6.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3895)
ABC_tran	PF00005.27	gi|564289547|ref|YP_008875800.1|	-	2e-31	109.4	0.0	3.5e-31	108.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|564289547|ref|YP_008875800.1|	-	1e-09	38.5	2.4	1.7e-09	37.7	2.4	1.3	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|564289547|ref|YP_008875800.1|	-	1.8e-05	24.3	2.5	0.00022	20.8	0.1	2.1	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564289547|ref|YP_008875800.1|	-	0.0096	16.3	0.2	0.024	15.0	0.2	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289547|ref|YP_008875800.1|	-	0.025	14.9	0.6	0.13	12.5	0.3	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|564289547|ref|YP_008875800.1|	-	0.064	13.0	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF87	PF01935.17	gi|564289547|ref|YP_008875800.1|	-	0.16	12.1	0.0	0.38	10.8	0.0	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
Methyltranf_PUA	PF13636.6	gi|564289548|ref|YP_008875801.1|	-	2.2e-12	46.8	0.1	3.4e-12	46.2	0.1	1.3	1	0	0	1	1	1	1	RNA-binding	PUA-like	domain	of	methyltransferase	RsmF
Methyltr_RsmB-F	PF01189.17	gi|564289549|ref|YP_008875802.1|	-	4e-50	170.2	0.0	5.5e-50	169.8	0.0	1.2	1	0	0	1	1	1	1	16S	rRNA	methyltransferase	RsmB/F
Methyltr_RsmF_N	PF17125.5	gi|564289549|ref|YP_008875802.1|	-	8.7e-11	42.2	0.0	5.9e-10	39.5	0.0	2.0	2	0	0	2	2	2	1	N-terminal	domain	of	16S	rRNA	methyltransferase	RsmF
FtsJ	PF01728.19	gi|564289549|ref|YP_008875802.1|	-	0.00014	22.0	0.0	0.00023	21.3	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_31	PF13847.6	gi|564289549|ref|YP_008875802.1|	-	0.0047	16.7	0.0	0.0087	15.9	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|564289549|ref|YP_008875802.1|	-	0.057	13.2	0.0	0.093	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PAC2	PF09754.9	gi|564289550|ref|YP_008875803.1|	-	7.7e-41	140.4	0.0	9.3e-41	140.2	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
Peptidase_S49	PF01343.18	gi|564289551|ref|YP_008875804.1|	-	1.6e-40	138.6	0.0	2.3e-40	138.0	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	S49
DUF3500	PF12006.8	gi|564289551|ref|YP_008875804.1|	-	0.08	12.4	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3500)
CLP_protease	PF00574.23	gi|564289551|ref|YP_008875804.1|	-	0.097	12.5	0.1	1.2	9.0	0.0	2.1	2	0	0	2	2	2	0	Clp	protease
Pilin_N	PF07790.11	gi|564289551|ref|YP_008875804.1|	-	0.32	11.9	0.1	0.32	11.9	0.1	2.1	2	1	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
DUF373	PF04123.13	gi|564289552|ref|YP_008875805.1|	-	3.7e-100	335.6	6.4	4.6e-100	335.3	6.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
SUR7	PF06687.12	gi|564289552|ref|YP_008875805.1|	-	0.03	13.9	0.5	0.057	13.0	0.1	1.5	1	1	0	1	1	1	0	SUR7/PalI	family
DUF5353	PF17304.2	gi|564289552|ref|YP_008875805.1|	-	2.7	7.8	6.4	1.2	8.9	0.4	3.1	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5353)
Diphthami_syn_2	PF01902.17	gi|564289553|ref|YP_008875806.1|	-	1e-58	198.4	0.0	2e-58	197.5	0.0	1.4	1	1	0	1	1	1	1	Diphthamide	synthase
ThiI	PF02568.14	gi|564289553|ref|YP_008875806.1|	-	0.011	15.3	0.0	0.016	14.8	0.0	1.2	1	0	0	1	1	1	0	Thiamine	biosynthesis	protein	(ThiI)
QueC	PF06508.13	gi|564289553|ref|YP_008875806.1|	-	0.06	12.8	0.0	0.094	12.2	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|564289553|ref|YP_008875806.1|	-	0.31	9.8	0.0	0.43	9.3	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyl	transferase
NTP_transferase	PF00483.23	gi|564289554|ref|YP_008875807.1|	-	6.8e-40	137.2	0.0	9.1e-40	136.8	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564289554|ref|YP_008875807.1|	-	1.4e-10	41.8	0.0	1.5e-10	41.6	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
NUDIX	PF00293.28	gi|564289555|ref|YP_008875808.1|	-	1.4e-09	38.1	0.1	2.3e-09	37.4	0.1	1.3	1	0	0	1	1	1	1	NUDIX	domain
GvpG	PF05120.12	gi|564289555|ref|YP_008875808.1|	-	0.11	12.5	0.0	0.55	10.3	0.0	2.0	2	0	0	2	2	2	0	Gas	vesicle	protein	G
Glyoxalase_4	PF13669.6	gi|564289556|ref|YP_008875809.1|	-	7.8e-15	55.1	0.0	9.8e-15	54.8	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|564289556|ref|YP_008875809.1|	-	2.1e-09	37.7	0.2	2.2e-09	37.6	0.2	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase	PF00903.25	gi|564289556|ref|YP_008875809.1|	-	1.4e-05	25.3	0.0	1.6e-05	25.1	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|564289556|ref|YP_008875809.1|	-	0.0063	17.3	0.1	0.0087	16.8	0.1	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
MM_CoA_mutase	PF01642.22	gi|564289557|ref|YP_008875810.1|	-	7e-226	750.7	3.9	8.5e-226	750.4	3.9	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
FKBP_C	PF00254.28	gi|564289558|ref|YP_008875811.1|	-	2.8e-24	85.3	0.1	3.8e-24	84.8	0.1	1.2	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
TOBE	PF03459.17	gi|564289558|ref|YP_008875811.1|	-	0.099	12.9	0.5	0.4	11.0	0.1	2.1	2	0	0	2	2	2	0	TOBE	domain
Acetyltransf_1	PF00583.25	gi|564289559|ref|YP_008875812.1|	-	1.7e-09	37.9	0.1	2.6e-09	37.4	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564289559|ref|YP_008875812.1|	-	1e-05	25.5	0.0	1.4e-05	25.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289559|ref|YP_008875812.1|	-	2.5e-05	24.6	0.0	3.6e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564289559|ref|YP_008875812.1|	-	0.0018	18.4	0.0	0.0032	17.6	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.7	gi|564289559|ref|YP_008875812.1|	-	0.0065	17.1	0.1	0.0089	16.7	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564289559|ref|YP_008875812.1|	-	0.15	12.1	0.0	0.29	11.2	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
HTH_10	PF04967.12	gi|564289560|ref|YP_008875813.1|	-	1.5e-17	63.1	0.1	5e-17	61.4	0.0	1.9	2	0	0	2	2	2	1	HTH	DNA	binding	domain
UPF0122	PF04297.14	gi|564289560|ref|YP_008875813.1|	-	0.0085	16.3	0.0	0.02	15.1	0.0	1.6	1	0	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Sigma70_r4	PF04545.16	gi|564289560|ref|YP_008875813.1|	-	0.031	13.8	0.0	0.076	12.6	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_11	PF08279.12	gi|564289560|ref|YP_008875813.1|	-	0.098	12.6	0.0	0.26	11.3	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
ABC_tran	PF00005.27	gi|564289561|ref|YP_008875814.1|	-	1.4e-28	100.1	0.0	1.9e-28	99.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289561|ref|YP_008875814.1|	-	4.8e-07	29.9	0.3	0.018	14.9	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564289561|ref|YP_008875814.1|	-	0.0014	18.2	0.2	0.082	12.3	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
Arylesterase	PF01731.20	gi|564289561|ref|YP_008875814.1|	-	0.024	14.8	0.0	0.048	13.9	0.0	1.4	1	0	0	1	1	1	0	Arylesterase
AAA_23	PF13476.6	gi|564289561|ref|YP_008875814.1|	-	0.052	14.1	0.0	0.084	13.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|564289562|ref|YP_008875815.1|	-	1.8e-26	93.3	0.0	2.4e-26	92.9	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_23	PF13476.6	gi|564289562|ref|YP_008875815.1|	-	2.4e-06	28.2	1.0	4.1e-06	27.5	1.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|564289562|ref|YP_008875815.1|	-	1.2e-05	25.3	1.1	0.00075	19.4	0.2	2.1	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|564289562|ref|YP_008875815.1|	-	1.9e-05	24.6	0.0	2.2e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
Zeta_toxin	PF06414.12	gi|564289562|ref|YP_008875815.1|	-	0.00024	20.4	0.0	0.00054	19.3	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_27	PF13514.6	gi|564289562|ref|YP_008875815.1|	-	0.00033	20.3	0.1	0.00073	19.2	0.1	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_13	PF13166.6	gi|564289562|ref|YP_008875815.1|	-	0.00089	18.0	0.0	0.0011	17.7	0.0	1.0	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|564289562|ref|YP_008875815.1|	-	0.0024	17.6	0.1	0.0047	16.7	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.6	gi|564289562|ref|YP_008875815.1|	-	0.0024	17.9	0.0	0.87	9.6	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|564289562|ref|YP_008875815.1|	-	0.004	16.9	0.1	0.0082	15.9	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|564289562|ref|YP_008875815.1|	-	0.004	16.6	0.1	0.0078	15.7	0.1	1.5	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_30	PF13604.6	gi|564289562|ref|YP_008875815.1|	-	0.0042	16.8	0.0	0.011	15.5	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564289562|ref|YP_008875815.1|	-	0.0046	17.1	0.0	0.0071	16.5	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564289562|ref|YP_008875815.1|	-	0.006	17.0	0.0	0.0093	16.4	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289562|ref|YP_008875815.1|	-	0.0072	16.6	0.0	0.083	13.2	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.23	gi|564289562|ref|YP_008875815.1|	-	0.013	15.6	0.3	0.04	14.0	0.1	1.9	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|564289562|ref|YP_008875815.1|	-	0.017	15.0	0.0	0.032	14.1	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_25	PF13481.6	gi|564289562|ref|YP_008875815.1|	-	0.019	14.5	0.2	0.067	12.8	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|564289562|ref|YP_008875815.1|	-	0.029	14.0	0.0	0.048	13.3	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
TsaE	PF02367.17	gi|564289562|ref|YP_008875815.1|	-	0.062	13.3	0.0	0.14	12.1	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
T2SSE	PF00437.20	gi|564289562|ref|YP_008875815.1|	-	0.068	12.2	0.0	0.11	11.5	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MobB	PF03205.14	gi|564289562|ref|YP_008875815.1|	-	0.13	12.2	0.3	1.8	8.5	0.0	2.4	3	0	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.6	gi|564289562|ref|YP_008875815.1|	-	0.14	12.7	0.1	0.24	12.0	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.16	gi|564289563|ref|YP_008875816.1|	-	6.2e-31	107.5	31.4	1.2e-30	106.6	31.4	1.3	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
UPF0220	PF05255.11	gi|564289563|ref|YP_008875816.1|	-	4.7	6.7	10.6	3	7.4	0.4	2.9	2	2	1	3	3	3	0	Uncharacterised	protein	family	(UPF0220)
BPD_transp_2	PF02653.16	gi|564289564|ref|YP_008875817.1|	-	1.5e-31	109.5	39.5	1.9e-31	109.2	39.5	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.6	gi|564289565|ref|YP_008875818.1|	-	1.8e-37	129.8	6.6	2.3e-37	129.5	6.6	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564289565|ref|YP_008875818.1|	-	2.4e-13	49.8	0.7	5.3e-13	48.7	0.7	1.5	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.28	gi|564289565|ref|YP_008875818.1|	-	8.1e-05	21.9	0.0	0.00017	20.8	0.0	1.6	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
TAT_signal	PF10518.9	gi|564289565|ref|YP_008875818.1|	-	0.14	12.0	4.6	0.37	10.7	4.6	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
adh_short_C2	PF13561.6	gi|564289566|ref|YP_008875819.1|	-	1.2e-35	123.2	2.3	1.8e-35	122.6	2.3	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564289566|ref|YP_008875819.1|	-	2.7e-31	108.6	0.7	3.3e-31	108.3	0.7	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564289566|ref|YP_008875819.1|	-	1.2e-05	25.3	0.7	1.7e-05	24.8	0.7	1.4	1	0	0	1	1	1	1	KR	domain
Polysacc_synt_2	PF02719.15	gi|564289566|ref|YP_008875819.1|	-	0.0069	15.6	0.0	0.01	15.0	0.0	1.2	1	0	0	1	1	1	1	Polysaccharide	biosynthesis	protein
Epimerase	PF01370.21	gi|564289566|ref|YP_008875819.1|	-	0.018	14.5	0.3	0.028	13.9	0.3	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
VCBS	PF13517.6	gi|564289566|ref|YP_008875819.1|	-	5.2	7.7	7.8	0.54	10.9	0.4	2.6	2	1	1	3	3	3	0	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
AMP-binding	PF00501.28	gi|564289567|ref|YP_008875820.1|	-	4.6e-72	242.9	0.0	6e-72	242.5	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564289567|ref|YP_008875820.1|	-	1.4e-21	77.2	0.1	3.2e-21	76.1	0.1	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
ACAS_N	PF16177.5	gi|564289567|ref|YP_008875820.1|	-	1.2e-08	34.7	0.1	1.2e-08	34.7	0.1	3.8	4	1	0	4	4	4	1	Acetyl-coenzyme	A	synthetase	N-terminus
AbiEi_4	PF13338.6	gi|564289567|ref|YP_008875820.1|	-	0.075	13.2	0.2	0.64	10.2	0.0	2.4	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
MFS_1	PF07690.16	gi|564289568|ref|YP_008875821.1|	-	9.7e-36	123.4	61.4	6e-23	81.3	27.1	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564289568|ref|YP_008875821.1|	-	0.07	12.0	18.2	0.85	8.4	0.0	3.9	2	2	1	4	4	4	0	MFS_1	like	family
zf-ribbon_3	PF13248.6	gi|564289569|ref|YP_008875822.1|	-	0.00014	21.1	4.7	0.0037	16.6	0.2	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|564289569|ref|YP_008875822.1|	-	0.00016	21.6	2.2	0.00017	21.5	2.2	1.1	1	0	0	1	1	1	1	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.6	gi|564289569|ref|YP_008875822.1|	-	0.00034	20.2	4.9	0.00083	19.0	4.9	1.6	1	1	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564289569|ref|YP_008875822.1|	-	0.00041	20.3	1.8	0.00042	20.3	1.8	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-C4_Topoisom	PF01396.19	gi|564289569|ref|YP_008875822.1|	-	0.00049	19.8	2.3	0.00061	19.5	2.3	1.3	1	1	0	1	1	1	1	Topoisomerase	DNA	binding	C4	zinc	finger
Nudix_N_2	PF14803.6	gi|564289569|ref|YP_008875822.1|	-	0.0025	17.7	0.9	0.068	13.1	0.9	2.0	1	1	0	1	1	1	1	Nudix	N-terminal
Zn_Tnp_IS91	PF14319.6	gi|564289569|ref|YP_008875822.1|	-	0.0026	17.7	2.2	0.0027	17.7	2.2	1.0	1	0	0	1	1	1	1	Transposase	zinc-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289569|ref|YP_008875822.1|	-	0.0028	17.5	1.7	0.0031	17.4	1.7	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
RNA_POL_M_15KD	PF02150.16	gi|564289569|ref|YP_008875822.1|	-	0.0042	16.9	2.2	0.005	16.7	2.2	1.2	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
DNA_RNApol_7kD	PF03604.13	gi|564289569|ref|YP_008875822.1|	-	0.0066	16.1	1.5	0.0087	15.7	1.5	1.2	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
UPF0547	PF10571.9	gi|564289569|ref|YP_008875822.1|	-	0.0099	15.9	2.3	0.072	13.2	2.3	2.0	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
A2L_zn_ribbon	PF08792.10	gi|564289569|ref|YP_008875822.1|	-	0.01	15.5	5.1	0.1	12.4	5.1	2.0	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Ribosomal_L37e	PF01907.19	gi|564289569|ref|YP_008875822.1|	-	0.011	15.9	1.7	0.012	15.7	1.7	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-HIT	PF04438.16	gi|564289569|ref|YP_008875822.1|	-	0.012	15.5	3.2	0.1	12.5	0.3	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zinc-ribbons_6	PF07191.12	gi|564289569|ref|YP_008875822.1|	-	0.016	15.2	1.0	0.019	15.0	1.0	1.1	1	0	0	1	1	1	0	zinc-ribbons
Vps36-NZF-N	PF16988.5	gi|564289569|ref|YP_008875822.1|	-	0.024	14.0	1.3	1.3	8.4	0.1	2.0	1	1	1	2	2	2	0	Vacuolar	protein	sorting	36	NZF-N	zinc-finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|564289569|ref|YP_008875822.1|	-	0.028	14.4	2.7	0.045	13.7	2.7	1.4	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|564289569|ref|YP_008875822.1|	-	0.038	13.6	1.9	0.25	11.0	0.2	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn_ribbon_SprT	PF17283.2	gi|564289569|ref|YP_008875822.1|	-	0.042	13.7	2.4	0.11	12.4	2.2	1.7	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
Rubredoxin_2	PF18073.1	gi|564289569|ref|YP_008875822.1|	-	0.045	13.5	5.3	1.7	8.4	0.3	2.3	1	1	1	2	2	2	0	Rubredoxin	metal	binding	domain
TF_Zn_Ribbon	PF08271.12	gi|564289569|ref|YP_008875822.1|	-	0.047	13.2	4.0	0.086	12.4	4.0	1.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
HypA	PF01155.19	gi|564289569|ref|YP_008875822.1|	-	0.068	13.2	1.0	0.066	13.2	1.0	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-piccolo	PF05715.13	gi|564289569|ref|YP_008875822.1|	-	0.085	13.0	4.1	1.4	9.1	4.1	2.0	1	1	0	1	1	1	0	Piccolo	Zn-finger
zf-IS66	PF13005.7	gi|564289569|ref|YP_008875822.1|	-	0.092	13.2	1.4	1.3	9.5	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Sgf11	PF08209.11	gi|564289569|ref|YP_008875822.1|	-	0.17	11.5	3.6	0.81	9.3	0.2	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Zn-ribbon_8	PF09723.10	gi|564289569|ref|YP_008875822.1|	-	0.19	11.9	4.1	0.49	10.6	0.3	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
Spt4	PF06093.13	gi|564289569|ref|YP_008875822.1|	-	0.2	11.8	2.3	0.47	10.6	2.3	1.6	1	1	0	1	1	1	0	Spt4/RpoE2	zinc	finger
zf-TFIIB	PF13453.6	gi|564289569|ref|YP_008875822.1|	-	0.23	10.8	2.9	0.48	9.8	2.9	1.6	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-HYPF	PF07503.12	gi|564289569|ref|YP_008875822.1|	-	0.25	11.2	0.5	0.25	11.2	0.5	2.1	1	1	1	2	2	2	0	HypF	finger
DUF1272	PF06906.11	gi|564289569|ref|YP_008875822.1|	-	0.33	11.1	0.3	0.33	11.1	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zf_Rg	PF17915.1	gi|564289569|ref|YP_008875822.1|	-	0.49	9.8	7.6	10	5.6	7.6	2.0	1	1	0	1	1	1	0	Reverse	gyrase	zinc	finger
zf-Mss51	PF13824.6	gi|564289569|ref|YP_008875822.1|	-	0.5	10.5	5.2	1.3	9.2	0.5	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Ribosomal_L32p	PF01783.23	gi|564289569|ref|YP_008875822.1|	-	0.61	10.4	3.2	1.2	9.4	3.2	1.6	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
PAPS_reduct	PF01507.19	gi|564289570|ref|YP_008875823.1|	-	5.8e-17	62.3	0.0	7.1e-13	49.0	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
Diphthami_syn_2	PF01902.17	gi|564289570|ref|YP_008875823.1|	-	0.023	14.2	0.0	0.092	12.2	0.0	1.8	2	0	0	2	2	2	0	Diphthamide	synthase
PP-binding_2	PF14573.6	gi|564289570|ref|YP_008875823.1|	-	0.15	12.3	0.2	0.34	11.2	0.2	1.6	1	0	0	1	1	1	0	Acyl-carrier
SpoIIM	PF01944.17	gi|564289571|ref|YP_008875824.1|	-	4.1e-25	88.7	10.8	5.1e-25	88.3	10.8	1.1	1	0	0	1	1	1	1	Stage	II	sporulation	protein	M
Fer2	PF00111.27	gi|564289573|ref|YP_008875826.1|	-	2.3e-10	40.3	2.2	3.3e-10	39.8	2.2	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|564289573|ref|YP_008875826.1|	-	0.015	15.3	0.1	0.017	15.1	0.1	1.2	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Trp_halogenase	PF04820.14	gi|564289574|ref|YP_008875827.1|	-	4.5e-15	55.4	1.3	1.3e-10	40.8	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_binding_2	PF00890.24	gi|564289574|ref|YP_008875827.1|	-	1.7e-10	40.6	7.8	1.5e-07	30.9	0.3	2.6	3	0	0	3	3	3	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564289574|ref|YP_008875827.1|	-	5.6e-09	35.7	3.6	1.4e-07	31.1	3.6	2.4	1	1	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|564289574|ref|YP_008875827.1|	-	3.2e-08	33.5	7.0	0.0011	18.7	1.1	2.5	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564289574|ref|YP_008875827.1|	-	6.6e-08	32.1	5.0	1.7e-05	24.2	0.1	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564289574|ref|YP_008875827.1|	-	6.9e-08	32.3	10.0	0.00028	20.4	3.2	2.9	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|564289574|ref|YP_008875827.1|	-	9.8e-07	29.3	9.6	0.00011	22.7	0.8	2.8	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564289574|ref|YP_008875827.1|	-	2.2e-06	27.0	0.4	3.9e-06	26.2	0.4	1.4	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|564289574|ref|YP_008875827.1|	-	6.4e-06	25.1	0.4	0.00013	20.8	0.6	2.2	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|564289574|ref|YP_008875827.1|	-	7.4e-06	26.1	6.1	1.8e-05	24.9	0.7	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.12	gi|564289574|ref|YP_008875827.1|	-	9.3e-05	21.6	2.8	0.03	13.4	0.4	2.2	2	0	0	2	2	2	2	Lycopene	cyclase	protein
Thi4	PF01946.17	gi|564289574|ref|YP_008875827.1|	-	0.00049	19.4	2.9	0.00053	19.3	1.0	2.0	2	0	0	2	2	2	1	Thi4	family
3HCDH_N	PF02737.18	gi|564289574|ref|YP_008875827.1|	-	0.0014	18.5	0.0	0.0026	17.7	0.0	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|564289574|ref|YP_008875827.1|	-	0.0031	17.2	0.0	0.0077	15.9	0.0	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_3	PF13738.6	gi|564289574|ref|YP_008875827.1|	-	0.0064	15.8	1.4	0.022	14.0	1.2	1.8	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|564289574|ref|YP_008875827.1|	-	0.017	14.4	1.3	0.017	14.4	1.3	2.0	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ThiF	PF00899.21	gi|564289574|ref|YP_008875827.1|	-	0.043	13.2	0.1	0.15	11.4	0.2	1.7	2	0	0	2	2	2	0	ThiF	family
Pilin_N	PF07790.11	gi|564289575|ref|YP_008875828.1|	-	1.2e-21	77.4	0.4	2e-21	76.7	0.4	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
PKD	PF00801.20	gi|564289575|ref|YP_008875828.1|	-	0.012	15.5	0.2	0.063	13.1	0.1	2.1	2	1	0	2	2	2	0	PKD	domain
Peptidase_M20	PF01546.28	gi|564289576|ref|YP_008875829.1|	-	2.3e-26	92.8	6.1	2.3e-26	92.8	6.1	1.5	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|564289576|ref|YP_008875829.1|	-	8.9e-13	48.1	0.5	2.1e-12	46.9	0.5	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Ribosomal_S10	PF00338.22	gi|564289577|ref|YP_008875830.1|	-	3.8e-11	43.1	0.0	5.2e-11	42.6	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
SPT16	PF08644.11	gi|564289577|ref|YP_008875830.1|	-	0.1	12.8	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	FACT	complex	subunit	(SPT16/CDC68)
NUDIX	PF00293.28	gi|564289578|ref|YP_008875831.1|	-	1.8e-17	63.6	0.7	2.1e-17	63.4	0.7	1.1	1	0	0	1	1	1	1	NUDIX	domain
AAA_17	PF13207.6	gi|564289578|ref|YP_008875831.1|	-	0.02	15.3	0.1	0.041	14.3	0.0	1.6	1	1	1	2	2	2	0	AAA	domain
DUF4013	PF13197.6	gi|564289579|ref|YP_008875832.1|	-	1.2e-35	122.8	22.7	1.2e-35	122.8	22.7	1.7	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF4013)
Man-6-P_recep	PF02157.15	gi|564289579|ref|YP_008875832.1|	-	0.41	9.7	0.5	0.69	8.9	0.5	1.3	1	0	0	1	1	1	0	Mannose-6-phosphate	receptor
TrmB	PF01978.19	gi|564289581|ref|YP_008875834.1|	-	0.023	14.6	0.0	0.052	13.4	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
SesA	PF17107.5	gi|564289581|ref|YP_008875834.1|	-	0.072	13.3	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
MacB_PCD	PF12704.7	gi|564289582|ref|YP_008875835.1|	-	1.4e-17	64.7	11.4	1.4e-17	64.7	11.4	2.3	2	1	0	3	3	3	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.21	gi|564289582|ref|YP_008875835.1|	-	6.2e-15	55.4	0.8	6.2e-15	55.4	0.8	3.0	3	0	0	3	3	3	1	FtsX-like	permease	family
DUF4376	PF14301.6	gi|564289582|ref|YP_008875835.1|	-	0.17	12.3	0.0	0.33	11.3	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4376)
ABC_tran	PF00005.27	gi|564289583|ref|YP_008875836.1|	-	2e-35	122.3	0.0	3.1e-35	121.7	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|564289583|ref|YP_008875836.1|	-	2.4e-05	23.9	0.1	0.0019	17.7	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|564289583|ref|YP_008875836.1|	-	8e-05	22.6	2.4	0.084	12.7	0.5	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564289583|ref|YP_008875836.1|	-	8.8e-05	22.2	0.5	0.00015	21.4	0.5	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289583|ref|YP_008875836.1|	-	0.00025	21.0	0.2	0.0004	20.3	0.2	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|564289583|ref|YP_008875836.1|	-	0.0011	19.4	0.3	0.002	18.5	0.3	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564289583|ref|YP_008875836.1|	-	0.0037	17.0	0.1	0.0087	15.8	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.6	gi|564289583|ref|YP_008875836.1|	-	0.017	15.6	0.0	0.025	15.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564289583|ref|YP_008875836.1|	-	0.018	14.7	1.7	0.34	10.4	0.1	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|564289583|ref|YP_008875836.1|	-	0.031	14.6	0.1	0.071	13.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|564289583|ref|YP_008875836.1|	-	0.039	13.3	0.2	0.72	9.2	0.1	2.1	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
T2SSE	PF00437.20	gi|564289583|ref|YP_008875836.1|	-	0.049	12.7	0.4	1.3	8.0	0.3	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
cobW	PF02492.19	gi|564289583|ref|YP_008875836.1|	-	0.081	12.5	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.23	gi|564289583|ref|YP_008875836.1|	-	0.11	12.6	0.2	0.26	11.4	0.1	1.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_33	PF13671.6	gi|564289583|ref|YP_008875836.1|	-	0.13	12.5	1.2	0.57	10.3	1.2	2.1	1	1	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.23	gi|564289583|ref|YP_008875836.1|	-	0.17	12.0	0.6	0.3	11.1	0.6	1.4	1	0	0	1	1	1	0	Dynamin	family
AAA_15	PF13175.6	gi|564289583|ref|YP_008875836.1|	-	0.32	10.6	0.0	0.44	10.2	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
LolA_like	PF17131.4	gi|564289584|ref|YP_008875837.1|	-	4.1e-07	29.9	4.1	1.2e-05	25.2	0.1	2.8	2	1	1	3	3	3	2	Outer	membrane	lipoprotein-sorting	protein
DUF2092	PF09865.9	gi|564289584|ref|YP_008875837.1|	-	0.0049	16.3	3.5	0.023	14.0	0.0	2.6	2	1	1	3	3	3	2	Predicted	periplasmic	protein	(DUF2092)
DUF4367	PF14285.6	gi|564289584|ref|YP_008875837.1|	-	0.055	13.9	0.1	0.055	13.9	0.1	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4367)
LolA	PF03548.15	gi|564289584|ref|YP_008875837.1|	-	0.12	12.1	0.1	0.32	10.7	0.0	1.8	2	0	0	2	2	2	0	Outer	membrane	lipoprotein	carrier	protein	LolA
Mut7-C	PF01927.16	gi|564289585|ref|YP_008875838.1|	-	2.2e-43	147.8	0.0	2.5e-43	147.7	0.0	1.0	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF5615	PF18480.1	gi|564289585|ref|YP_008875838.1|	-	2.8e-06	27.0	0.3	3.2e-05	23.6	0.1	2.3	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF5615)
Zn_ribbon_SprT	PF17283.2	gi|564289585|ref|YP_008875838.1|	-	0.021	14.7	0.2	0.99	9.4	0.4	2.2	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564289585|ref|YP_008875838.1|	-	0.077	13.1	0.4	14	5.9	0.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
Toprim_3	PF13362.6	gi|564289585|ref|YP_008875838.1|	-	0.1	13.0	0.1	0.16	12.3	0.1	1.4	1	0	0	1	1	1	0	Toprim	domain
DNA_ligase_ZBD	PF03119.16	gi|564289585|ref|YP_008875838.1|	-	0.11	12.5	2.9	0.26	11.3	2.9	1.7	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DNA_pol_B_thumb	PF14791.6	gi|564289586|ref|YP_008875839.1|	-	5.6e-22	77.7	0.0	1.5e-21	76.3	0.0	1.8	1	0	0	1	1	1	1	DNA	polymerase	beta	thumb
HHH_8	PF14716.6	gi|564289586|ref|YP_008875839.1|	-	3.1e-16	59.5	2.1	1.1e-13	51.3	0.1	3.6	2	1	1	3	3	3	1	Helix-hairpin-helix	domain
HHH_5	PF14520.6	gi|564289586|ref|YP_008875839.1|	-	2e-12	47.5	0.5	1.1e-11	45.1	0.1	2.6	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
PHP	PF02811.19	gi|564289586|ref|YP_008875839.1|	-	9.8e-08	32.5	0.0	1.8e-07	31.6	0.0	1.5	1	0	0	1	1	1	1	PHP	domain
HHH_2	PF12826.7	gi|564289586|ref|YP_008875839.1|	-	0.001	19.1	0.8	0.77	9.9	0.1	3.6	2	1	2	4	4	4	1	Helix-hairpin-helix	motif
DNA_pol_B_palm	PF14792.6	gi|564289586|ref|YP_008875839.1|	-	0.006	16.8	0.0	0.017	15.3	0.0	1.8	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
HHH	PF00633.23	gi|564289586|ref|YP_008875839.1|	-	0.05	13.5	0.1	0.21	11.5	0.1	2.3	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Aminotran_5	PF00266.19	gi|564289587|ref|YP_008875840.1|	-	0.037	13.0	0.1	0.046	12.7	0.1	1.1	1	0	0	1	1	1	0	Aminotransferase	class-V
Acetyltransf_11	PF13720.6	gi|564289587|ref|YP_008875840.1|	-	0.043	14.3	1.3	0.31	11.5	1.3	2.0	1	1	0	1	1	1	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
eIF3g	PF12353.8	gi|564289587|ref|YP_008875840.1|	-	0.08	13.3	0.6	5.4	7.4	0.0	2.2	2	0	0	2	2	2	0	Eukaryotic	translation	initiation	factor	3	subunit	G
MHB	PF16525.5	gi|564289589|ref|YP_008875842.1|	-	0.12	12.6	0.0	0.13	12.5	0.0	1.2	1	0	0	1	1	1	0	Haemophore,	haem-binding
Response_reg	PF00072.24	gi|564289590|ref|YP_008875843.1|	-	1.9e-21	76.3	0.1	3.1e-21	75.7	0.1	1.3	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS	PF00989.25	gi|564289590|ref|YP_008875843.1|	-	3.7e-11	43.0	0.0	9.1e-11	41.8	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
PAS_9	PF13426.7	gi|564289590|ref|YP_008875843.1|	-	2.4e-07	30.9	0.0	2e-06	28.0	0.0	2.2	2	0	0	2	2	2	1	PAS	domain
PAS_4	PF08448.10	gi|564289590|ref|YP_008875843.1|	-	1.1e-06	28.8	0.0	4.2e-06	27.0	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
OKR_DC_1_N	PF03709.15	gi|564289590|ref|YP_008875843.1|	-	3.1e-06	27.4	0.0	6.7e-06	26.4	0.0	1.6	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS_3	PF08447.12	gi|564289590|ref|YP_008875843.1|	-	1.9e-05	24.9	0.0	4.9e-05	23.5	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564289590|ref|YP_008875843.1|	-	7.2e-05	22.7	0.0	0.00022	21.2	0.0	1.9	2	0	0	2	2	2	1	PAS	domain
FleQ	PF06490.11	gi|564289590|ref|YP_008875843.1|	-	0.075	13.4	0.0	0.19	12.1	0.0	1.7	1	0	0	1	1	1	0	Flagellar	regulatory	protein	FleQ
Rhomboid	PF01694.22	gi|564289591|ref|YP_008875844.1|	-	2.2e-26	92.7	15.3	2.2e-26	92.7	15.3	1.5	2	0	0	2	2	2	1	Rhomboid	family
zf-AN1	PF01428.16	gi|564289591|ref|YP_008875844.1|	-	3.5e-12	46.3	6.9	4.9e-12	45.8	6.9	1.2	1	0	0	1	1	1	1	AN1-like	Zinc	finger
DUF1751	PF08551.10	gi|564289591|ref|YP_008875844.1|	-	0.00026	21.5	1.3	0.00026	21.5	1.3	2.2	2	1	1	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
Endonuclease_5	PF04493.14	gi|564289592|ref|YP_008875845.1|	-	1.7e-54	184.5	0.0	2.2e-54	184.2	0.0	1.1	1	0	0	1	1	1	1	Endonuclease	V
DUF99	PF01949.16	gi|564289592|ref|YP_008875845.1|	-	0.032	13.7	0.5	0.27	10.6	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF99
Acetyltransf_1	PF00583.25	gi|564289592|ref|YP_008875845.1|	-	0.051	13.8	0.0	0.15	12.3	0.0	1.7	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	family
UvrC_HhH_N	PF08459.11	gi|564289592|ref|YP_008875845.1|	-	0.082	12.8	0.0	0.19	11.6	0.0	1.6	1	1	0	1	1	1	0	UvrC	Helix-hairpin-helix	N-terminal
adh_short	PF00106.25	gi|564289593|ref|YP_008875846.1|	-	6.1e-50	169.4	0.0	7.5e-50	169.1	0.0	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564289593|ref|YP_008875846.1|	-	2.2e-39	135.4	0.0	2.8e-39	135.1	0.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564289593|ref|YP_008875846.1|	-	1.4e-10	41.4	0.0	2.5e-10	40.5	0.0	1.4	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564289593|ref|YP_008875846.1|	-	5.7e-06	26.0	0.0	2.2e-05	24.0	0.0	1.9	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.17	gi|564289593|ref|YP_008875846.1|	-	0.0002	20.6	0.0	0.00038	19.6	0.0	1.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
DUF1776	PF08643.10	gi|564289593|ref|YP_008875846.1|	-	0.00028	20.4	0.0	0.00034	20.1	0.0	1.2	1	0	0	1	1	1	1	Fungal	family	of	unknown	function	(DUF1776)
Eno-Rase_NADH_b	PF12242.8	gi|564289593|ref|YP_008875846.1|	-	0.13	12.0	0.1	0.31	10.8	0.0	1.6	2	0	0	2	2	2	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
ArsA_ATPase	PF02374.15	gi|564289594|ref|YP_008875847.1|	-	2.1e-78	263.6	0.0	5.3e-52	176.9	0.0	2.1	2	0	0	2	2	2	2	Anion-transporting	ATPase
CbiA	PF01656.23	gi|564289594|ref|YP_008875847.1|	-	1.2e-07	31.8	0.0	2.9e-07	30.6	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|564289594|ref|YP_008875847.1|	-	7.3e-07	29.3	0.0	5.7e-05	23.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
ParA	PF10609.9	gi|564289594|ref|YP_008875847.1|	-	8.6e-05	22.1	0.3	0.0094	15.4	0.0	2.9	3	0	0	3	3	3	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|564289594|ref|YP_008875847.1|	-	0.024	14.1	0.0	0.037	13.5	0.0	1.2	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
PhoH	PF02562.16	gi|564289594|ref|YP_008875847.1|	-	0.056	12.9	0.0	0.1	12.0	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
IstB_IS21	PF01695.17	gi|564289594|ref|YP_008875847.1|	-	0.072	12.8	0.0	0.1	12.3	0.0	1.2	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
SRP54	PF00448.22	gi|564289594|ref|YP_008875847.1|	-	0.11	12.2	0.4	1.1	8.8	0.3	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|564289594|ref|YP_008875847.1|	-	0.12	12.0	1.6	0.19	11.3	0.2	2.1	2	1	0	2	2	2	0	AAA	domain
DZR	PF12773.7	gi|564289595|ref|YP_008875848.1|	-	0.0023	17.9	0.2	0.0036	17.3	0.2	1.3	1	1	0	1	1	1	1	Double	zinc	ribbon
FYVE	PF01363.21	gi|564289595|ref|YP_008875848.1|	-	0.0033	17.5	0.2	0.0041	17.2	0.2	1.1	1	0	0	1	1	1	1	FYVE	zinc	finger
zf-ribbon_3	PF13248.6	gi|564289595|ref|YP_008875848.1|	-	0.0043	16.4	1.0	1.6	8.3	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-dskA_traR	PF01258.17	gi|564289595|ref|YP_008875848.1|	-	0.031	14.2	0.7	0.24	11.4	0.0	2.2	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zinc_ribbon_2	PF13240.6	gi|564289595|ref|YP_008875848.1|	-	0.055	13.2	5.2	0.52	10.1	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564289595|ref|YP_008875848.1|	-	0.12	12.6	4.4	0.29	11.3	4.4	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
RecR	PF02132.15	gi|564289595|ref|YP_008875848.1|	-	0.12	11.9	2.2	0.25	10.9	2.2	1.5	1	1	0	1	1	1	0	RecR	protein
Helicase_C_2	PF13307.6	gi|564289596|ref|YP_008875849.1|	-	1.9e-24	86.8	0.0	3.8e-24	85.8	0.0	1.5	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.15	gi|564289596|ref|YP_008875849.1|	-	1.1e-14	54.4	0.0	1e-11	44.8	0.0	2.1	2	0	0	2	2	2	2	DEAD_2
DEAD	PF00270.29	gi|564289596|ref|YP_008875849.1|	-	4.9e-08	32.9	0.0	0.0028	17.5	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|564289596|ref|YP_008875849.1|	-	4.4e-07	30.0	0.0	0.0033	17.4	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
PhoH	PF02562.16	gi|564289596|ref|YP_008875849.1|	-	9.3e-06	25.2	0.3	0.00085	18.8	0.0	2.2	2	0	0	2	2	2	1	PhoH-like	protein
AAA_30	PF13604.6	gi|564289596|ref|YP_008875849.1|	-	0.0019	17.9	0.6	0.09	12.5	0.1	2.6	3	0	0	3	3	3	1	AAA	domain
AAA_19	PF13245.6	gi|564289596|ref|YP_008875849.1|	-	0.0034	17.7	0.9	0.038	14.3	0.2	2.4	2	1	0	2	2	1	1	AAA	domain
AAA_22	PF13401.6	gi|564289596|ref|YP_008875849.1|	-	0.0036	17.6	1.2	3.3	8.0	0.0	3.0	2	1	0	3	3	3	2	AAA	domain
zf_Rg	PF17915.1	gi|564289596|ref|YP_008875849.1|	-	0.027	13.9	0.0	0.071	12.5	0.0	1.7	1	0	0	1	1	1	0	Reverse	gyrase	zinc	finger
UTP25	PF06862.12	gi|564289596|ref|YP_008875849.1|	-	0.031	13.1	0.0	0.051	12.4	0.0	1.2	1	0	0	1	1	1	0	Utp25,	U3	small	nucleolar	RNA-associated	SSU	processome	protein	25
DUF2075	PF09848.9	gi|564289596|ref|YP_008875849.1|	-	0.043	13.0	0.2	2	7.6	0.1	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_11	PF13086.6	gi|564289596|ref|YP_008875849.1|	-	0.13	12.0	0.0	0.56	10.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
TBP	PF00352.21	gi|564289597|ref|YP_008875850.1|	-	1.8e-57	191.3	0.0	5.9e-28	96.7	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.8	gi|564289597|ref|YP_008875850.1|	-	6.1e-05	23.1	0.0	0.11	12.6	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
T4bSS_IcmS	PF12608.8	gi|564289597|ref|YP_008875850.1|	-	7.4e-05	23.0	0.0	0.014	15.7	0.0	2.3	1	1	0	2	2	2	2	Type	IVb	secretion,	IcmS,	effector-recruitment
PucR	PF07905.11	gi|564289597|ref|YP_008875850.1|	-	0.071	13.4	0.0	5.4	7.3	0.0	2.5	2	1	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
Ribosomal_S30AE	PF02482.19	gi|564289597|ref|YP_008875850.1|	-	0.15	12.8	0.0	24	5.8	0.0	2.2	2	0	0	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
TRAM	PF01938.20	gi|564289598|ref|YP_008875851.1|	-	1.3e-14	53.9	1.2	2.6e-14	52.9	1.2	1.6	1	0	0	1	1	1	1	TRAM	domain
CoA_transf_3	PF02515.17	gi|564289599|ref|YP_008875852.1|	-	9.5e-125	416.5	0.0	1.1e-124	416.4	0.0	1.0	1	0	0	1	1	1	1	CoA-transferase	family	III
B12-binding	PF02310.19	gi|564289600|ref|YP_008875853.1|	-	3.7e-20	72.2	0.6	4.5e-20	71.9	0.6	1.1	1	0	0	1	1	1	1	B12	binding	domain
Flg_hook	PF02120.16	gi|564289600|ref|YP_008875853.1|	-	0.057	13.3	0.2	1.3	9.0	0.0	2.7	3	0	0	3	3	3	0	Flagellar	hook-length	control	protein	FliK
Peripla_BP_6	PF13458.6	gi|564289600|ref|YP_008875853.1|	-	0.066	12.9	0.6	0.36	10.5	0.4	1.8	1	1	1	2	2	2	0	Periplasmic	binding	protein
SNAPc_SNAP43	PF09808.9	gi|564289600|ref|YP_008875853.1|	-	0.069	13.1	0.0	0.095	12.6	0.0	1.2	1	0	0	1	1	1	0	Small	nuclear	RNA	activating	complex	(SNAPc),	subunit	SNAP43
Met_asp_mut_E	PF06368.11	gi|564289601|ref|YP_008875854.1|	-	8.3e-205	680.4	0.0	9.4e-205	680.2	0.0	1.0	1	0	0	1	1	1	1	Methylaspartate	mutase	E	chain	(MutE)
MAAL_C	PF07476.11	gi|564289602|ref|YP_008875855.1|	-	2.4e-116	387.3	0.0	3.4e-116	386.7	0.0	1.2	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
MAAL_N	PF05034.13	gi|564289602|ref|YP_008875855.1|	-	3.6e-69	231.5	0.6	8.5e-69	230.2	0.6	1.6	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	N-terminus
MR_MLE_C	PF13378.6	gi|564289602|ref|YP_008875855.1|	-	5.5e-12	45.7	0.3	1.2e-11	44.7	0.3	1.5	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MaoC_dehydratas	PF01575.19	gi|564289603|ref|YP_008875856.1|	-	5.8e-05	22.6	0.0	0.0033	17.0	0.0	2.2	2	0	0	2	2	2	2	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564289603|ref|YP_008875856.1|	-	0.00023	21.3	0.0	0.0036	17.5	0.0	2.3	2	0	0	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
4HBT_2	PF13279.6	gi|564289603|ref|YP_008875856.1|	-	0.011	16.3	0.0	0.22	12.0	0.0	2.2	2	0	0	2	2	2	0	Thioesterase-like	superfamily
4HBT	PF03061.22	gi|564289603|ref|YP_008875856.1|	-	0.12	12.7	0.5	0.92	9.9	0.0	2.5	2	1	0	2	2	2	0	Thioesterase	superfamily
HpcH_HpaI	PF03328.14	gi|564289604|ref|YP_008875857.1|	-	3.9e-16	58.9	0.1	1.5e-15	56.9	0.0	2.0	2	1	0	2	2	2	1	HpcH/HpaI	aldolase/citrate	lyase	family
Malate_synthase	PF01274.22	gi|564289604|ref|YP_008875857.1|	-	1.8e-05	23.2	0.0	0.00025	19.5	0.0	2.2	2	1	0	2	2	2	1	Malate	synthase
C-C_Bond_Lyase	PF15617.6	gi|564289604|ref|YP_008875857.1|	-	0.00024	20.4	0.0	0.49	9.5	0.0	2.1	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
Aminotran_1_2	PF00155.21	gi|564289605|ref|YP_008875858.1|	-	3e-46	158.2	0.0	3.6e-46	158.0	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|564289605|ref|YP_008875858.1|	-	3.4e-08	32.8	0.0	9.1e-08	31.4	0.0	1.6	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|564289605|ref|YP_008875858.1|	-	6.2e-05	22.4	0.0	9.1e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|564289605|ref|YP_008875858.1|	-	0.00014	20.5	0.0	0.00019	20.1	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Alliinase_C	PF04864.13	gi|564289605|ref|YP_008875858.1|	-	0.002	17.0	0.0	0.0053	15.7	0.0	1.7	2	0	0	2	2	2	1	Allinase
CinA	PF02464.17	gi|564289607|ref|YP_008875860.1|	-	1.5e-58	196.8	1.5	1.7e-58	196.6	1.5	1.0	1	0	0	1	1	1	1	Competence-damaged	protein
UPF0254	PF06787.11	gi|564289607|ref|YP_008875860.1|	-	0.037	13.8	0.2	8.8	6.1	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0254)
YdjM	PF04307.14	gi|564289608|ref|YP_008875861.1|	-	4e-13	49.0	4.0	4.6e-12	45.6	4.0	2.1	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Zn_dep_PLPC	PF00882.18	gi|564289608|ref|YP_008875861.1|	-	7.3e-06	26.1	0.2	1.1e-05	25.6	0.2	1.2	1	0	0	1	1	1	1	Zinc	dependent	phospholipase	C
PHP_C	PF13263.6	gi|564289609|ref|YP_008875862.1|	-	5.7e-08	32.4	0.3	1.3e-07	31.3	0.3	1.6	1	0	0	1	1	1	1	PHP-associated
Spt5-NGN	PF03439.13	gi|564289611|ref|YP_008875864.1|	-	2.3e-24	85.1	0.1	3.6e-24	84.5	0.1	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.29	gi|564289611|ref|YP_008875864.1|	-	1.3e-07	31.3	0.3	1.3e-07	31.3	0.3	2.4	3	0	0	3	3	3	1	KOW	motif
Glyco_hydro_65C	PF03633.15	gi|564289611|ref|YP_008875864.1|	-	0.1	12.5	0.2	0.19	11.7	0.2	1.4	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	65,	C-terminal	domain
DbpA	PF03880.15	gi|564289611|ref|YP_008875864.1|	-	0.12	12.4	0.3	0.31	11.1	0.1	1.7	2	0	0	2	2	2	0	DbpA	RNA	binding	domain
SecE	PF00584.20	gi|564289612|ref|YP_008875865.1|	-	0.00011	22.0	0.2	0.00014	21.7	0.2	1.2	1	0	0	1	1	1	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
MCPsignal	PF00015.21	gi|564289613|ref|YP_008875866.1|	-	3.6e-41	140.9	25.6	3.6e-41	140.9	25.6	6.4	5	2	2	7	7	6	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
dCache_1	PF02743.18	gi|564289613|ref|YP_008875866.1|	-	4.5e-11	43.0	0.7	4.5e-11	43.0	0.7	5.9	4	2	1	6	6	6	1	Cache	domain
HAMP	PF00672.25	gi|564289613|ref|YP_008875866.1|	-	2.2e-09	37.5	14.7	1.9e-06	28.2	0.1	5.9	5	1	0	5	5	4	2	HAMP	domain
EzrA	PF06160.12	gi|564289613|ref|YP_008875866.1|	-	7.2e-08	31.1	30.6	3.7e-05	22.1	9.0	4.1	3	1	1	4	4	4	2	Septation	ring	formation	regulator,	EzrA
Laminin_II	PF06009.12	gi|564289613|ref|YP_008875866.1|	-	0.0002	21.4	42.9	0.027	14.5	0.4	5.3	2	2	3	5	5	5	3	Laminin	Domain	II
DUF948	PF06103.11	gi|564289613|ref|YP_008875866.1|	-	0.0066	16.7	50.8	0.36	11.1	4.0	8.0	2	1	4	7	7	7	4	Bacterial	protein	of	unknown	function	(DUF948)
DUF4559	PF15112.6	gi|564289613|ref|YP_008875866.1|	-	0.02	14.6	21.4	0.039	13.6	6.9	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4559)
DUF1664	PF07889.12	gi|564289613|ref|YP_008875866.1|	-	0.033	14.2	41.7	0.3	11.1	3.7	6.3	2	2	4	6	6	6	0	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|564289613|ref|YP_008875866.1|	-	0.055	13.8	38.5	1.5	9.2	2.5	5.8	2	2	3	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
NPV_P10	PF05531.12	gi|564289613|ref|YP_008875866.1|	-	0.1	13.0	33.5	2.4	8.7	3.4	6.2	3	2	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Fib_alpha	PF08702.10	gi|564289613|ref|YP_008875866.1|	-	0.14	12.3	30.3	0.29	11.3	6.7	4.7	1	1	4	5	5	5	0	Fibrinogen	alpha/beta	chain	family
Exonuc_VII_S	PF02609.16	gi|564289613|ref|YP_008875866.1|	-	0.16	12.1	7.9	3.4	7.8	0.0	4.2	4	0	0	4	4	3	0	Exonuclease	VII	small	subunit
IFT57	PF10498.9	gi|564289613|ref|YP_008875866.1|	-	0.21	10.5	38.5	0.64	8.9	11.9	3.3	1	1	0	2	2	2	0	Intra-flagellar	transport	protein	57
DUF2203	PF09969.9	gi|564289613|ref|YP_008875866.1|	-	0.29	11.9	36.0	0.071	13.8	3.6	5.4	1	1	5	6	6	6	0	Uncharacterized	conserved	protein	(DUF2203)
Syntaxin_2	PF14523.6	gi|564289613|ref|YP_008875866.1|	-	0.57	10.6	21.2	8.9	6.7	3.3	5.6	1	1	5	6	6	6	0	Syntaxin-like	protein
AIP3	PF03915.13	gi|564289613|ref|YP_008875866.1|	-	0.58	9.2	37.2	2.2	7.3	11.0	3.2	1	1	2	3	3	3	0	Actin	interacting	protein	3
RPW8	PF05659.11	gi|564289613|ref|YP_008875866.1|	-	0.63	9.7	16.5	33	4.2	0.3	6.3	3	2	3	6	6	6	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Dynamin_M	PF01031.20	gi|564289613|ref|YP_008875866.1|	-	0.65	9.2	13.6	2.4	7.3	2.6	2.8	2	1	0	2	2	2	0	Dynamin	central	region
APG17	PF04108.12	gi|564289613|ref|YP_008875866.1|	-	0.81	8.7	39.3	0.067	12.3	10.0	3.6	2	1	1	3	3	3	0	Autophagy	protein	Apg17
DUF2779	PF11074.8	gi|564289613|ref|YP_008875866.1|	-	0.87	10.1	3.2	17	5.9	0.1	3.4	3	1	0	4	4	3	0	Domain	of	unknown	function(DUF2779)
Prominin	PF05478.11	gi|564289613|ref|YP_008875866.1|	-	1.2	7.1	24.0	0.032	12.2	11.5	2.8	1	1	2	3	3	3	0	Prominin
Atg14	PF10186.9	gi|564289613|ref|YP_008875866.1|	-	2.9	6.9	24.3	3.1	6.8	8.1	3.6	2	1	2	4	4	4	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Mce4_CUP1	PF11887.8	gi|564289613|ref|YP_008875866.1|	-	3.3	7.1	19.0	1	8.7	4.9	3.1	1	1	0	3	3	3	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Spc7	PF08317.11	gi|564289613|ref|YP_008875866.1|	-	3.4	6.5	42.6	0.13	11.1	7.0	3.9	1	1	2	4	4	4	0	Spc7	kinetochore	protein
Peroxin-13_N	PF04088.13	gi|564289613|ref|YP_008875866.1|	-	3.5	7.9	5.8	0.72	10.1	0.4	2.7	2	1	0	2	2	2	0	Peroxin	13,	N-terminal	region
CALCOCO1	PF07888.11	gi|564289613|ref|YP_008875866.1|	-	3.8	6.3	40.3	1.3	7.8	8.5	3.6	1	1	3	4	4	4	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
COG2	PF06148.11	gi|564289613|ref|YP_008875866.1|	-	4.4	7.4	32.5	0.48	10.5	0.3	6.2	2	2	1	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Dna2	PF08696.11	gi|564289613|ref|YP_008875866.1|	-	5	6.9	14.1	1.4	8.7	4.1	3.3	2	1	1	3	3	3	0	DNA	replication	factor	Dna2
TMPIT	PF07851.13	gi|564289613|ref|YP_008875866.1|	-	5.1	6.2	28.5	0.11	11.7	4.0	4.4	2	2	3	5	5	5	0	TMPIT-like	protein
VAPB_antitox	PF02697.14	gi|564289613|ref|YP_008875866.1|	-	5.7	7.8	7.9	2.6	8.9	0.1	3.9	2	1	1	3	3	3	0	Putative	antitoxin
Serine_rich	PF08824.10	gi|564289613|ref|YP_008875866.1|	-	6	6.9	16.8	0.29	11.1	1.2	3.5	1	1	2	4	4	4	0	Serine	rich	protein	interaction	domain
KxDL	PF10241.9	gi|564289613|ref|YP_008875866.1|	-	6.4	7.1	8.9	16	5.9	1.0	4.0	2	2	1	3	3	3	0	Uncharacterized	conserved	protein
Mod_r	PF07200.13	gi|564289613|ref|YP_008875866.1|	-	6.6	6.8	37.5	1.2	9.3	1.0	5.4	2	2	3	5	5	5	0	Modifier	of	rudimentary	(Mod(r))	protein
Peripla_BP_6	PF13458.6	gi|564289614|ref|YP_008875867.1|	-	9.9e-35	120.8	12.4	1.3e-34	120.4	12.4	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|564289614|ref|YP_008875867.1|	-	6.2e-19	68.3	0.0	1.1e-18	67.5	0.0	1.3	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|564289614|ref|YP_008875867.1|	-	1.1e-05	24.6	0.0	0.00019	20.5	0.0	2.1	2	0	0	2	2	2	1	Periplasmic	binding	protein	domain
DUF4649	PF15507.6	gi|564289614|ref|YP_008875867.1|	-	0.092	12.7	0.0	0.19	11.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4649)
Tubulin	PF00091.25	gi|564289615|ref|YP_008875868.1|	-	1.2e-40	139.8	0.3	2.1e-40	139.0	0.3	1.4	1	0	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|564289615|ref|YP_008875868.1|	-	1.3e-33	115.2	1.9	3.5e-33	113.8	0.5	2.5	2	0	0	2	2	2	1	FtsZ	family,	C-terminal	domain
NAD_binding_10	PF13460.6	gi|564289615|ref|YP_008875868.1|	-	0.0088	16.0	1.8	0.019	14.8	0.2	2.1	2	0	0	2	2	2	1	NAD(P)H-binding
Tubulin_2	PF13809.6	gi|564289615|ref|YP_008875868.1|	-	0.16	11.1	8.3	0.17	11.0	1.3	2.4	1	1	0	2	2	2	0	Tubulin	like
tRNA_deacylase	PF04414.12	gi|564289616|ref|YP_008875869.1|	-	1.8e-63	213.7	0.0	3e-63	213.1	0.0	1.3	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
Na_Ca_ex	PF01699.24	gi|564289617|ref|YP_008875870.1|	-	6.6e-16	58.6	20.9	4e-09	36.6	3.2	2.8	2	1	0	2	2	2	2	Sodium/calcium	exchanger	protein
Shikimate_dh_N	PF08501.11	gi|564289618|ref|YP_008875871.1|	-	6.1e-26	90.5	0.0	1.7e-25	89.1	0.0	1.7	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|564289618|ref|YP_008875871.1|	-	1.2e-11	44.1	0.2	2.7e-11	43.0	0.2	1.6	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|564289618|ref|YP_008875871.1|	-	1.3e-10	41.5	0.0	2.1e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_2	PF03446.15	gi|564289618|ref|YP_008875871.1|	-	0.00012	22.3	0.0	0.0015	18.7	0.0	2.1	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
IlvN	PF07991.12	gi|564289618|ref|YP_008875871.1|	-	0.00027	20.5	0.1	0.00053	19.6	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
adh_short	PF00106.25	gi|564289618|ref|YP_008875871.1|	-	0.00085	18.8	0.6	0.0027	17.2	0.6	1.8	1	1	0	1	1	1	1	short	chain	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|564289618|ref|YP_008875871.1|	-	0.00093	18.6	0.0	0.0015	17.9	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.24	gi|564289618|ref|YP_008875871.1|	-	0.0011	18.2	3.3	0.0018	17.4	3.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564289618|ref|YP_008875871.1|	-	0.0022	18.3	0.9	0.01	16.1	0.9	2.1	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
GIDA	PF01134.22	gi|564289618|ref|YP_008875871.1|	-	0.012	14.7	0.5	0.016	14.3	0.5	1.1	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Pyr_redox_2	PF07992.14	gi|564289618|ref|YP_008875871.1|	-	0.018	14.3	0.2	0.026	13.7	0.2	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|564289618|ref|YP_008875871.1|	-	0.024	13.9	0.2	0.041	13.1	0.2	1.3	1	0	0	1	1	1	0	FAD	binding	domain
3HCDH_N	PF02737.18	gi|564289618|ref|YP_008875871.1|	-	0.089	12.7	0.1	0.14	12.0	0.1	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HHH_5	PF14520.6	gi|564289619|ref|YP_008875872.1|	-	6.5e-08	33.1	0.3	1e-07	32.4	0.3	1.3	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
DUF4332	PF14229.6	gi|564289619|ref|YP_008875872.1|	-	0.00017	21.9	0.0	0.0014	18.8	0.0	2.1	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4332)
Cdd1	PF11731.8	gi|564289619|ref|YP_008875872.1|	-	0.0011	19.2	0.0	0.0017	18.6	0.0	1.3	1	0	0	1	1	1	1	Pathogenicity	locus
IMS_HHH	PF11798.8	gi|564289619|ref|YP_008875872.1|	-	0.0094	16.2	0.0	0.016	15.5	0.0	1.4	1	0	0	1	1	1	1	IMS	family	HHH	motif
DNA_pol_lambd_f	PF10391.9	gi|564289619|ref|YP_008875872.1|	-	0.082	12.7	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	Fingers	domain	of	DNA	polymerase	lambda
HNF-1_N	PF04814.13	gi|564289619|ref|YP_008875872.1|	-	2.9	8.5	8.8	63	4.1	11.2	1.8	2	0	0	2	2	2	0	Hepatocyte	nuclear	factor	1	(HNF-1),	N	terminus
SOG2	PF10428.9	gi|564289619|ref|YP_008875872.1|	-	3.1	6.9	7.7	3.5	6.7	7.7	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
DUF966	PF06136.13	gi|564289619|ref|YP_008875872.1|	-	3.3	7.4	8.7	4	7.1	8.7	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF966)
Lin-8	PF03353.15	gi|564289619|ref|YP_008875872.1|	-	4.4	6.8	6.8	5.5	6.5	6.8	1.1	1	0	0	1	1	1	0	Ras-mediated	vulval-induction	antagonist
BUD22	PF09073.10	gi|564289619|ref|YP_008875872.1|	-	4.5	6.5	17.5	5.5	6.2	17.5	1.1	1	0	0	1	1	1	0	BUD22
SDA1	PF05285.12	gi|564289619|ref|YP_008875872.1|	-	6	6.2	15.3	7	6.0	15.3	1.2	1	0	0	1	1	1	0	SDA1
Presenilin	PF01080.17	gi|564289619|ref|YP_008875872.1|	-	7.4	5.2	8.5	8.8	5.0	8.5	1.1	1	0	0	1	1	1	0	Presenilin
Dicty_REP	PF05086.12	gi|564289619|ref|YP_008875872.1|	-	8.9	4.1	8.1	9.6	4.0	8.1	1.0	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
Raftlin	PF15250.6	gi|564289619|ref|YP_008875872.1|	-	9.2	4.9	8.3	11	4.6	8.3	1.2	1	0	0	1	1	1	0	Raftlin
Hid1	PF12722.7	gi|564289619|ref|YP_008875872.1|	-	9.2	4.2	11.0	11	4.0	11.0	1.0	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
Apt1	PF10351.9	gi|564289619|ref|YP_008875872.1|	-	9.3	5.0	8.0	10	4.9	8.0	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
Chorismate_bind	PF00425.18	gi|564289620|ref|YP_008875873.1|	-	1e-101	339.8	0.0	1.7e-101	339.2	0.0	1.3	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|564289620|ref|YP_008875873.1|	-	1.4e-07	31.9	0.0	4.3e-07	30.2	0.0	1.9	2	0	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
GATase	PF00117.28	gi|564289621|ref|YP_008875874.1|	-	3.1e-40	138.0	0.0	2.1e-38	132.0	0.0	2.1	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|564289621|ref|YP_008875874.1|	-	0.00054	19.8	0.9	0.0039	17.0	0.9	2.2	1	1	0	1	1	1	1	Peptidase	C26
Aminotran_4	PF01063.19	gi|564289622|ref|YP_008875875.1|	-	6.5e-45	153.7	0.0	7.7e-45	153.5	0.0	1.0	1	0	0	1	1	1	1	Amino-transferase	class	IV
Alpha-amylase	PF00128.24	gi|564289623|ref|YP_008875876.1|	-	2.1e-19	70.3	1.6	3.9e-19	69.4	1.6	1.6	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
DUF1939	PF09154.10	gi|564289623|ref|YP_008875876.1|	-	2e-11	43.8	4.1	3.7e-11	43.0	2.9	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1939)
TAT_signal	PF10518.9	gi|564289623|ref|YP_008875876.1|	-	0.024	14.5	2.4	0.024	14.5	2.4	1.6	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Aminotran_5	PF00266.19	gi|564289623|ref|YP_008875876.1|	-	0.13	11.2	0.0	0.18	10.7	0.0	1.1	1	0	0	1	1	1	0	Aminotransferase	class-V
Sacchrp_dh_NADP	PF03435.18	gi|564289624|ref|YP_008875877.1|	-	1.6e-11	44.6	0.0	2.6e-11	43.9	0.0	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Epimerase	PF01370.21	gi|564289624|ref|YP_008875877.1|	-	0.0024	17.4	0.0	0.0032	17.0	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Bacteriocin_IId	PF09221.10	gi|564289624|ref|YP_008875877.1|	-	0.012	15.8	0.0	0.024	14.8	0.0	1.5	1	0	0	1	1	1	0	Bacteriocin	class	IId	cyclical	uberolysin-like
NAD_binding_10	PF13460.6	gi|564289624|ref|YP_008875877.1|	-	0.013	15.4	0.0	0.025	14.4	0.0	1.5	1	0	0	1	1	1	0	NAD(P)H-binding
Rieske	PF00355.26	gi|564289625|ref|YP_008875878.1|	-	8.3e-08	32.1	0.0	1.1e-07	31.7	0.0	1.2	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
MCM_OB	PF17207.3	gi|564289626|ref|YP_008875879.1|	-	0.045	13.6	1.8	0.18	11.7	1.3	1.9	1	1	1	2	2	2	0	MCM	OB	domain
Zn_Tnp_IS91	PF14319.6	gi|564289626|ref|YP_008875879.1|	-	0.045	13.8	0.4	0.062	13.3	0.3	1.3	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289626|ref|YP_008875879.1|	-	0.52	10.3	3.2	1	9.3	3.2	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
FYDLN_acid	PF09538.10	gi|564289626|ref|YP_008875879.1|	-	0.62	10.8	6.2	0.18	12.5	2.4	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
Usp	PF00582.26	gi|564289627|ref|YP_008875880.1|	-	4e-65	218.6	8.8	7.7e-34	117.2	0.8	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
Lactamase_B_4	PF13691.6	gi|564289627|ref|YP_008875880.1|	-	0.036	13.7	0.0	9.3	6.0	0.0	2.4	2	0	0	2	2	2	0	tRNase	Z	endonuclease
PTS_IIB	PF02302.17	gi|564289627|ref|YP_008875880.1|	-	0.068	13.9	0.2	1.8	9.3	0.0	2.4	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
FAD_binding_6	PF00970.24	gi|564289628|ref|YP_008875881.1|	-	7.8e-13	48.6	0.0	1e-12	48.2	0.0	1.2	1	0	0	1	1	1	1	Oxidoreductase	FAD-binding	domain
POR_N	PF01855.19	gi|564289629|ref|YP_008875882.1|	-	2.7e-61	207.3	0.6	4e-61	206.7	0.6	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|564289629|ref|YP_008875882.1|	-	4.4e-39	134.4	0.1	1.2e-38	133.0	0.1	1.7	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.18	gi|564289629|ref|YP_008875882.1|	-	2.9e-06	27.0	0.2	5.7e-06	26.0	0.2	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PFOR_II	PF17147.4	gi|564289629|ref|YP_008875882.1|	-	0.0038	17.5	0.0	0.0091	16.3	0.0	1.7	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_C	PF02775.21	gi|564289630|ref|YP_008875883.1|	-	4.3e-32	111.0	0.3	6.4e-32	110.4	0.3	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|564289630|ref|YP_008875883.1|	-	6e-20	71.2	0.2	1.6e-19	69.8	0.2	1.7	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Methyltransf_11	PF08241.12	gi|564289631|ref|YP_008875884.1|	-	9.9e-20	71.0	0.0	1.6e-19	70.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564289631|ref|YP_008875884.1|	-	3.1e-18	66.3	0.0	5.4e-18	65.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564289631|ref|YP_008875884.1|	-	2.1e-14	53.6	0.0	2.8e-14	53.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564289631|ref|YP_008875884.1|	-	3.6e-11	42.8	0.0	4.6e-11	42.5	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|564289631|ref|YP_008875884.1|	-	1.2e-10	41.5	0.0	2.7e-10	40.3	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564289631|ref|YP_008875884.1|	-	3.4e-10	40.5	0.0	6e-10	39.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|564289631|ref|YP_008875884.1|	-	2e-05	24.5	0.0	3.2e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|564289631|ref|YP_008875884.1|	-	0.0072	15.6	0.0	0.01	15.2	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_8	PF05148.15	gi|564289631|ref|YP_008875884.1|	-	0.012	15.5	0.0	0.019	14.8	0.0	1.4	1	1	0	1	1	1	0	Hypothetical	methyltransferase
FtsJ	PF01728.19	gi|564289631|ref|YP_008875884.1|	-	0.021	14.9	0.0	0.048	13.8	0.0	1.6	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
FAD_binding_7	PF03441.14	gi|564289632|ref|YP_008875885.1|	-	1e-68	230.8	0.5	1.4e-68	230.4	0.5	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|564289632|ref|YP_008875885.1|	-	1.5e-29	103.2	0.5	2.3e-29	102.5	0.5	1.3	1	0	0	1	1	1	1	DNA	photolyase
YdjM	PF04307.14	gi|564289633|ref|YP_008875886.1|	-	2.9e-08	33.2	7.2	6.2e-08	32.1	7.2	1.5	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4131	PF13567.6	gi|564289634|ref|YP_008875887.1|	-	0.0065	16.1	1.8	0.014	15.1	0.1	2.2	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4131)
DAO	PF01266.24	gi|564289636|ref|YP_008875889.1|	-	1.1e-11	44.9	0.0	7.1e-05	22.5	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564289636|ref|YP_008875889.1|	-	7.7e-08	31.8	0.0	1.5e-07	30.8	0.0	1.5	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.14	gi|564289636|ref|YP_008875889.1|	-	8.6e-08	31.4	0.0	0.00028	19.9	0.0	3.0	3	0	0	3	3	3	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.14	gi|564289636|ref|YP_008875889.1|	-	9.3e-07	28.4	0.2	3.7e-06	26.4	0.0	2.1	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564289636|ref|YP_008875889.1|	-	2.7e-06	27.0	0.4	1.8e-05	24.3	0.4	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564289636|ref|YP_008875889.1|	-	1.1e-05	24.4	0.0	0.0005	18.9	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.24	gi|564289636|ref|YP_008875889.1|	-	1.8e-05	24.1	0.0	0.00011	21.4	0.0	1.9	1	1	1	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564289636|ref|YP_008875889.1|	-	6e-05	22.4	0.2	0.0038	16.5	0.2	2.8	1	1	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.22	gi|564289636|ref|YP_008875889.1|	-	8.3e-05	21.8	0.0	0.00078	18.6	0.0	2.0	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|564289636|ref|YP_008875889.1|	-	0.00013	21.3	0.0	0.00084	18.6	0.0	2.1	2	1	0	2	2	2	1	Thi4	family
NAD_binding_8	PF13450.6	gi|564289636|ref|YP_008875889.1|	-	0.00063	19.9	0.0	0.0016	18.6	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|564289636|ref|YP_008875889.1|	-	0.0048	16.2	0.0	0.0079	15.5	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|564289636|ref|YP_008875889.1|	-	0.13	12.5	0.0	0.29	11.4	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
NAD_kinase	PF01513.21	gi|564289637|ref|YP_008875890.1|	-	1.7e-08	34.0	1.4	2.7e-08	33.4	1.3	1.5	1	1	0	1	1	1	1	ATP-NAD	kinase
Peripla_BP_1	PF00532.21	gi|564289637|ref|YP_008875890.1|	-	0.13	11.7	0.0	0.2	11.0	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
UPF0175	PF03683.13	gi|564289639|ref|YP_008875892.1|	-	2.5e-07	30.3	0.0	2.9e-07	30.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
HTH_17	PF12728.7	gi|564289639|ref|YP_008875892.1|	-	0.066	13.4	0.0	0.083	13.1	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
ANT	PF03374.14	gi|564289639|ref|YP_008875892.1|	-	0.081	13.2	0.0	0.093	13.1	0.0	1.1	1	0	0	1	1	1	0	Phage	antirepressor	protein	KilAC	domain
Sigma70_r4	PF04545.16	gi|564289639|ref|YP_008875892.1|	-	0.11	12.0	0.0	0.17	11.5	0.0	1.2	1	0	0	1	1	1	0	Sigma-70,	region	4
Tn916-Xis	PF09035.10	gi|564289639|ref|YP_008875892.1|	-	0.13	12.5	0.0	0.13	12.5	0.0	1.1	1	0	0	1	1	1	0	Excisionase	from	transposon	Tn916
Sigma70_r4_2	PF08281.12	gi|564289639|ref|YP_008875892.1|	-	0.14	11.8	0.0	0.2	11.4	0.0	1.2	1	0	0	1	1	1	0	Sigma-70,	region	4
Cytochrom_B_C	PF00032.17	gi|564289642|ref|YP_008875895.1|	-	1e-08	35.4	1.2	2e-08	34.4	0.2	1.9	2	1	0	2	2	2	1	Cytochrome	b(C-terminal)/b6/petD
Rhomboid	PF01694.22	gi|564289642|ref|YP_008875895.1|	-	0.069	13.2	1.5	0.13	12.2	1.5	1.4	1	0	0	1	1	1	0	Rhomboid	family
Cytochrome_B	PF00033.19	gi|564289643|ref|YP_008875896.1|	-	1.6e-44	152.0	17.3	2.2e-44	151.5	17.3	1.2	1	0	0	1	1	1	1	Cytochrome	b/b6/petB
Cytochrom_B_N_2	PF13631.6	gi|564289643|ref|YP_008875896.1|	-	1.1e-40	139.4	13.1	2.2e-40	138.4	11.4	2.0	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
DUF4405	PF14358.6	gi|564289643|ref|YP_008875896.1|	-	0.00056	20.4	1.8	0.00056	20.4	1.8	3.1	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4405)
DUF373	PF04123.13	gi|564289643|ref|YP_008875896.1|	-	0.018	14.5	6.6	0.046	13.2	6.6	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
Rieske	PF00355.26	gi|564289644|ref|YP_008875897.1|	-	0.00024	21.0	0.0	0.00042	20.2	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
AGTRAP	PF06396.11	gi|564289645|ref|YP_008875898.1|	-	0.16	11.8	0.6	0.25	11.1	0.5	1.4	1	1	0	1	1	1	0	Angiotensin	II,	type	I	receptor-associated	protein	(AGTRAP)
Copper-bind	PF00127.20	gi|564289646|ref|YP_008875899.1|	-	1.5e-13	51.0	0.1	3.6e-13	49.8	0.1	1.7	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|564289646|ref|YP_008875899.1|	-	0.22	11.4	12.4	0.13	12.2	9.1	2.4	1	1	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5337	PF17272.2	gi|564289648|ref|YP_008875901.1|	-	0.072	12.9	1.3	0.25	11.2	0.1	2.1	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5337)
DUF202	PF02656.15	gi|564289648|ref|YP_008875901.1|	-	0.12	12.9	2.6	0.15	12.5	0.5	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
Usp	PF00582.26	gi|564289649|ref|YP_008875902.1|	-	1.1e-35	123.2	0.6	1.8e-35	122.5	0.6	1.3	1	1	0	1	1	1	1	Universal	stress	protein	family
HhH-GPD	PF00730.25	gi|564289650|ref|YP_008875903.1|	-	2.3e-20	73.1	0.0	3e-20	72.7	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|564289650|ref|YP_008875903.1|	-	8.6e-10	38.0	0.1	3.3e-08	33.0	0.0	3.1	2	1	1	3	3	3	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|564289650|ref|YP_008875903.1|	-	0.0031	18.1	0.1	0.17	12.6	0.0	2.7	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
DUF3349	PF11829.8	gi|564289650|ref|YP_008875903.1|	-	0.044	14.6	0.0	0.09	13.6	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3349)
IMS_HHH	PF11798.8	gi|564289650|ref|YP_008875903.1|	-	0.066	13.6	0.0	0.21	12.0	0.0	1.9	2	0	0	2	2	2	0	IMS	family	HHH	motif
EndIII_4Fe-2S	PF10576.9	gi|564289650|ref|YP_008875903.1|	-	0.069	13.5	2.8	0.12	12.7	2.8	1.4	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
LPD29	PF18847.1	gi|564289650|ref|YP_008875903.1|	-	0.13	13.2	0.0	0.2	12.6	0.0	1.2	1	0	0	1	1	1	0	Large	polyvalent	protein	associated	domain	29
Acetyltransf_3	PF13302.7	gi|564289651|ref|YP_008875904.1|	-	3e-23	83.0	0.0	3.7e-23	82.7	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564289651|ref|YP_008875904.1|	-	2.8e-12	46.9	0.0	3.5e-12	46.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_8	PF13523.6	gi|564289651|ref|YP_008875904.1|	-	9.8e-09	35.0	0.0	2.9e-08	33.5	0.0	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564289651|ref|YP_008875904.1|	-	4.6e-07	30.1	0.0	9.1e-07	29.1	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289651|ref|YP_008875904.1|	-	0.1	13.0	0.0	0.17	12.4	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289651|ref|YP_008875904.1|	-	0.16	12.0	0.0	0.59	10.1	0.0	1.8	2	0	0	2	2	2	0	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|564289652|ref|YP_008875905.1|	-	3.8e-31	108.6	0.0	4.7e-31	108.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564289652|ref|YP_008875905.1|	-	1e-11	45.2	0.0	1.2e-11	45.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564289652|ref|YP_008875905.1|	-	1.5e-11	44.6	0.0	2.1e-11	44.1	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_8	PF13523.6	gi|564289652|ref|YP_008875905.1|	-	7.9e-09	35.3	0.1	7.1e-08	32.3	0.1	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289652|ref|YP_008875905.1|	-	0.013	15.4	0.0	0.026	14.5	0.0	1.5	1	0	0	1	1	1	0	FR47-like	protein
AhpC-TSA	PF00578.21	gi|564289653|ref|YP_008875906.1|	-	3.9e-16	59.1	0.0	4.5e-16	58.9	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564289653|ref|YP_008875906.1|	-	6.7e-07	29.1	0.0	7.8e-07	28.9	0.0	1.1	1	0	0	1	1	1	1	Redoxin
PRC	PF05239.16	gi|564289654|ref|YP_008875907.1|	-	1.1e-10	41.4	1.0	1.4e-10	41.1	1.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
DUF2171	PF09939.9	gi|564289654|ref|YP_008875907.1|	-	0.028	14.7	0.4	0.091	13.0	0.4	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2171)
TrkA_N	PF02254.18	gi|564289655|ref|YP_008875908.1|	-	1.2e-20	73.9	1.8	3.2e-20	72.5	1.8	1.8	1	0	0	1	1	1	1	TrkA-N	domain
DHH	PF01368.20	gi|564289655|ref|YP_008875908.1|	-	3.7e-11	43.2	3.2	3.2e-10	40.1	0.9	2.5	2	0	0	2	2	2	1	DHH	family
F420_oxidored	PF03807.17	gi|564289655|ref|YP_008875908.1|	-	2e-07	31.5	0.5	9.9e-07	29.3	0.2	2.4	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
DHHA1	PF02272.19	gi|564289655|ref|YP_008875908.1|	-	8.5e-07	29.5	0.1	5.6e-06	26.8	0.0	2.3	2	0	0	2	2	2	1	DHHA1	domain
Sacchrp_dh_NADP	PF03435.18	gi|564289655|ref|YP_008875908.1|	-	1.4e-06	28.6	1.0	1.1e-05	25.7	0.3	2.6	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|564289655|ref|YP_008875908.1|	-	2.9e-06	27.0	0.1	9.3e-06	25.4	0.0	1.9	3	0	0	3	3	3	1	Ketopantoate	reductase	PanE/ApbA
IlvN	PF07991.12	gi|564289655|ref|YP_008875908.1|	-	3.2e-05	23.5	0.3	6.9e-05	22.5	0.3	1.6	1	1	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|564289655|ref|YP_008875908.1|	-	9.7e-05	22.6	0.0	0.00018	21.7	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_7	PF13241.6	gi|564289655|ref|YP_008875908.1|	-	0.00019	21.8	1.8	0.00049	20.5	1.4	2.0	1	1	0	1	1	1	1	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.14	gi|564289655|ref|YP_008875908.1|	-	0.00092	18.8	0.1	0.0021	17.6	0.1	1.7	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Epimerase	PF01370.21	gi|564289655|ref|YP_008875908.1|	-	0.002	17.6	1.1	0.013	15.0	0.1	2.3	1	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
adh_short	PF00106.25	gi|564289655|ref|YP_008875908.1|	-	0.002	17.6	1.5	0.0035	16.8	0.4	1.9	2	1	0	2	2	2	1	short	chain	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|564289655|ref|YP_008875908.1|	-	0.0027	17.7	0.0	0.0055	16.7	0.0	1.5	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.18	gi|564289655|ref|YP_008875908.1|	-	0.0035	17.2	0.1	0.0096	15.8	0.1	1.8	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.20	gi|564289655|ref|YP_008875908.1|	-	0.0041	17.2	0.1	0.0093	16.0	0.1	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
adh_short_C2	PF13561.6	gi|564289655|ref|YP_008875908.1|	-	0.017	14.7	3.8	0.063	12.8	1.1	2.6	2	1	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
2-Hacid_dh_C	PF02826.19	gi|564289655|ref|YP_008875908.1|	-	0.017	14.5	0.0	0.042	13.2	0.0	1.6	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|564289655|ref|YP_008875908.1|	-	0.018	14.4	0.7	0.045	13.1	0.7	1.7	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
KR	PF08659.10	gi|564289655|ref|YP_008875908.1|	-	0.02	14.8	0.7	0.049	13.5	0.1	2.0	2	0	0	2	2	2	0	KR	domain
XdhC_C	PF13478.6	gi|564289655|ref|YP_008875908.1|	-	0.082	13.4	0.3	0.33	11.5	0.1	2.1	2	0	0	2	2	2	0	XdhC	Rossmann	domain
Ldh_1_N	PF00056.23	gi|564289655|ref|YP_008875908.1|	-	0.18	11.9	1.5	0.33	11.0	0.5	1.9	2	0	0	2	2	2	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Virul_fac_BrkB	PF03631.15	gi|564289656|ref|YP_008875909.1|	-	1.2e-25	90.7	33.7	1.3e-25	90.5	33.7	1.0	1	0	0	1	1	1	1	Virulence	factor	BrkB
DUF1180	PF06679.12	gi|564289656|ref|YP_008875909.1|	-	2.1	8.7	4.0	5.7	7.3	4.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1180)
Acetyltransf_10	PF13673.7	gi|564289657|ref|YP_008875910.1|	-	6.4e-24	84.3	0.0	7.4e-24	84.1	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564289657|ref|YP_008875910.1|	-	4.6e-12	46.2	0.0	5.5e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564289657|ref|YP_008875910.1|	-	2.6e-09	37.4	0.0	3.3e-09	37.0	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564289657|ref|YP_008875910.1|	-	2.1e-06	27.9	0.1	3.8e-06	27.0	0.1	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564289657|ref|YP_008875910.1|	-	9.4e-05	22.5	0.2	0.00043	20.4	0.0	2.0	1	1	1	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_5	PF13444.6	gi|564289657|ref|YP_008875910.1|	-	0.0012	19.5	0.1	0.0042	17.8	0.1	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289657|ref|YP_008875910.1|	-	0.0038	17.2	0.0	0.0056	16.6	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Paramyxo_PNT	PF14320.6	gi|564289657|ref|YP_008875910.1|	-	0.009	15.2	0.0	0.011	14.9	0.0	1.1	1	0	0	1	1	1	1	Phosphoprotein	P	region	PNT	disordered
PanZ	PF12568.8	gi|564289657|ref|YP_008875910.1|	-	0.13	11.9	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
zf-C2H2_6	PF13912.6	gi|564289658|ref|YP_008875912.1|	-	0.027	14.5	1.3	0.041	13.9	1.3	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.10	gi|564289658|ref|YP_008875912.1|	-	0.05	13.7	2.8	0.062	13.4	2.8	1.2	1	0	0	1	1	1	0	Zinc	ribbon	domain
IMPDH	PF00478.25	gi|564289659|ref|YP_008875913.1|	-	3.3e-142	473.6	9.9	3.8e-142	473.4	9.9	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
CBS	PF00571.28	gi|564289659|ref|YP_008875913.1|	-	2.2e-25	88.9	4.8	1.5e-12	47.8	0.5	2.7	2	0	0	2	2	2	2	CBS	domain
NMO	PF03060.15	gi|564289659|ref|YP_008875913.1|	-	2.9e-12	46.6	8.7	2.8e-06	27.0	4.3	2.3	2	0	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|564289659|ref|YP_008875913.1|	-	2.3e-08	33.4	5.2	2.3e-08	33.4	5.2	1.6	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
Glu_synthase	PF01645.17	gi|564289659|ref|YP_008875913.1|	-	4.7e-05	22.7	6.8	8.7e-05	21.8	5.1	1.9	2	0	0	2	2	2	1	Conserved	region	in	glutamate	synthase
ThiG	PF05690.14	gi|564289659|ref|YP_008875913.1|	-	0.00011	21.6	1.4	0.00011	21.6	1.4	2.3	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
DHO_dh	PF01180.21	gi|564289659|ref|YP_008875913.1|	-	0.00013	21.2	2.1	0.00016	21.0	1.0	1.6	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
His_biosynth	PF00977.21	gi|564289659|ref|YP_008875913.1|	-	0.00016	21.2	2.0	0.00065	19.2	0.1	2.3	1	1	0	2	2	2	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|564289659|ref|YP_008875913.1|	-	0.0024	17.0	0.2	0.0024	17.0	0.2	2.0	2	0	0	2	2	2	1	Dihydrouridine	synthase	(Dus)
G3P_antiterm	PF04309.12	gi|564289659|ref|YP_008875913.1|	-	0.048	13.1	1.2	0.087	12.2	0.2	1.9	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
Zn-ribbon_8	PF09723.10	gi|564289661|ref|YP_008875915.1|	-	0.016	15.3	3.2	0.3	11.2	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
DZR	PF12773.7	gi|564289661|ref|YP_008875915.1|	-	0.026	14.6	0.2	0.035	14.1	0.2	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564289661|ref|YP_008875915.1|	-	0.12	11.8	2.4	0.42	10.1	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Pro_CA	PF00484.19	gi|564289662|ref|YP_008875916.1|	-	1.9e-28	99.7	0.0	2.6e-28	99.3	0.0	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
DUF3164	PF11363.8	gi|564289662|ref|YP_008875916.1|	-	0.19	11.3	0.0	0.29	10.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3164)
CM_2	PF01817.21	gi|564289663|ref|YP_008875917.1|	-	2.8e-14	53.2	4.1	3.2e-14	53.0	4.1	1.1	1	0	0	1	1	1	1	Chorismate	mutase	type	II
DUF4025	PF13217.6	gi|564289663|ref|YP_008875917.1|	-	0.017	15.0	1.1	0.03	14.2	1.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4025)
DUF853	PF05872.12	gi|564289663|ref|YP_008875917.1|	-	0.048	12.3	0.2	0.054	12.1	0.2	1.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
GHMP_kinases_N	PF00288.26	gi|564289664|ref|YP_008875918.1|	-	8.2e-12	45.2	3.1	1.1e-11	44.8	1.2	2.2	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
DUF3955	PF13127.6	gi|564291324|ref|YP_008875919.1|	-	0.15	11.9	0.6	0.15	11.9	0.6	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3955)
TMEM237	PF15383.6	gi|564291324|ref|YP_008875919.1|	-	0.88	8.6	2.0	1.3	8.0	2.0	1.3	1	0	0	1	1	1	0	Transmembrane	protein	237
Phage_holin_3_6	PF07332.11	gi|564289665|ref|YP_008875920.1|	-	0.055	13.5	2.4	0.051	13.6	2.4	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
TrkA_N	PF02254.18	gi|564289666|ref|YP_008875921.1|	-	1.2e-29	103.0	0.9	2.3e-29	102.0	0.9	1.5	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564289666|ref|YP_008875921.1|	-	1.2e-17	63.5	0.3	1.7e-15	56.6	0.0	2.8	3	0	0	3	3	3	1	TrkA-C	domain
F420_oxidored	PF03807.17	gi|564289666|ref|YP_008875921.1|	-	7.9e-06	26.4	0.1	2.5e-05	24.8	0.1	1.9	1	1	1	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.6	gi|564289666|ref|YP_008875921.1|	-	0.00018	21.4	0.5	0.00031	20.7	0.5	1.6	1	1	0	1	1	1	1	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|564289666|ref|YP_008875921.1|	-	0.00049	20.3	0.1	0.00074	19.8	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
3HCDH_N	PF02737.18	gi|564289666|ref|YP_008875921.1|	-	0.00068	19.6	0.1	0.00095	19.1	0.1	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Peripla_BP_3	PF13377.6	gi|564289666|ref|YP_008875921.1|	-	0.0029	17.9	0.1	0.0042	17.4	0.1	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein-like	domain
ADH_zinc_N	PF00107.26	gi|564289666|ref|YP_008875921.1|	-	0.0037	17.2	0.0	0.046	13.7	0.0	2.1	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
XdhC_C	PF13478.6	gi|564289666|ref|YP_008875921.1|	-	0.0037	17.8	0.1	0.0072	16.8	0.1	1.5	1	0	0	1	1	1	1	XdhC	Rossmann	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564289666|ref|YP_008875921.1|	-	0.006	16.2	0.4	0.16	11.6	0.0	2.3	1	1	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|564289666|ref|YP_008875921.1|	-	0.0068	16.8	0.2	0.012	16.0	0.2	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NmrA	PF05368.13	gi|564289666|ref|YP_008875921.1|	-	0.011	15.3	0.1	0.017	14.7	0.1	1.2	1	0	0	1	1	1	0	NmrA-like	family
Pyr_redox	PF00070.27	gi|564289666|ref|YP_008875921.1|	-	0.011	16.3	0.2	0.095	13.3	0.1	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564289666|ref|YP_008875921.1|	-	0.015	14.9	0.0	0.022	14.4	0.0	1.4	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|564289666|ref|YP_008875921.1|	-	0.017	14.5	0.0	0.028	13.8	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|564289666|ref|YP_008875921.1|	-	0.022	15.6	0.6	0.05	14.4	0.6	1.6	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_2	PF03446.15	gi|564289666|ref|YP_008875921.1|	-	0.048	13.8	0.0	0.072	13.3	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Shikimate_DH	PF01488.20	gi|564289666|ref|YP_008875921.1|	-	0.073	13.1	0.0	0.11	12.5	0.0	1.4	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
PglD_N	PF17836.1	gi|564289666|ref|YP_008875921.1|	-	0.19	12.4	0.7	0.57	10.9	0.3	2.1	2	1	0	2	2	2	0	PglD	N-terminal	domain
TrkH	PF02386.16	gi|564289667|ref|YP_008875922.1|	-	2.5e-115	385.8	11.4	3.1e-115	385.5	11.4	1.0	1	0	0	1	1	1	1	Cation	transport	protein
TrkH	PF02386.16	gi|564289669|ref|YP_008875924.1|	-	4.2e-67	226.7	11.8	2.1e-65	221.1	11.8	2.0	1	1	0	1	1	1	1	Cation	transport	protein
TrbC	PF04956.13	gi|564289669|ref|YP_008875924.1|	-	0.88	9.8	10.8	0.8	10.0	2.2	4.0	2	1	0	2	2	2	0	TrbC/VIRB2	family
Usp	PF00582.26	gi|564289670|ref|YP_008875925.1|	-	1.5e-08	35.2	0.8	2.3e-08	34.7	0.8	1.3	1	1	0	1	1	1	1	Universal	stress	protein	family
Cohesin	PF00963.18	gi|564289672|ref|YP_008875927.1|	-	0.014	15.6	2.0	0.022	15.0	0.8	1.8	1	1	1	2	2	2	0	Cohesin	domain
DUF839	PF05787.13	gi|564289673|ref|YP_008875928.1|	-	8.8e-17	61.4	12.4	6.7e-14	51.9	9.6	3.6	2	1	1	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF839)
Dockerin_1	PF00404.18	gi|564289673|ref|YP_008875928.1|	-	0.0026	17.9	4.8	0.0045	17.2	1.7	2.6	2	0	0	2	2	2	1	Dockerin	type	I	domain
EF-hand_6	PF13405.6	gi|564289673|ref|YP_008875928.1|	-	0.0059	16.4	2.0	2.6	8.2	0.0	3.1	2	0	0	2	2	2	2	EF-hand	domain
EF-hand_1	PF00036.32	gi|564289673|ref|YP_008875928.1|	-	0.01	15.3	4.5	2.1	8.1	0.1	3.4	3	0	0	3	3	3	0	EF	hand
EF-hand_7	PF13499.6	gi|564289673|ref|YP_008875928.1|	-	0.023	15.2	1.2	0.082	13.4	0.7	2.3	2	0	0	2	2	2	0	EF-hand	domain	pair
Endotoxin_mid	PF09131.10	gi|564289673|ref|YP_008875928.1|	-	0.09	12.4	0.5	0.21	11.3	0.5	1.5	1	0	0	1	1	1	0	Bacillus	thuringiensis	delta-Endotoxin,	middle	domain
PadR	PF03551.14	gi|564289675|ref|YP_008875930.1|	-	1.8e-07	31.0	0.1	2.6e-07	30.5	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.7	gi|564289675|ref|YP_008875930.1|	-	0.05	13.7	0.1	0.069	13.2	0.1	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF505	PF04458.12	gi|564289675|ref|YP_008875930.1|	-	0.061	11.7	0.0	0.062	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF4364	PF14277.6	gi|564289675|ref|YP_008875930.1|	-	0.21	11.3	0.0	0.31	10.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
VirB3	PF05101.13	gi|564289676|ref|YP_008875931.1|	-	0.14	12.4	0.9	0.17	12.1	0.9	1.3	1	0	0	1	1	1	0	Type	IV	secretory	pathway,	VirB3-like	protein
Acyl-CoA_dh_1	PF00441.24	gi|564289677|ref|YP_008875932.1|	-	7.9e-50	169.0	1.2	1.1e-49	168.5	1.2	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|564289677|ref|YP_008875932.1|	-	1.3e-37	128.9	1.2	3.7e-37	127.4	0.2	2.1	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|564289677|ref|YP_008875932.1|	-	7.4e-27	94.2	1.8	1.2e-26	93.6	1.8	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564289677|ref|YP_008875932.1|	-	2.5e-22	78.9	0.0	4.5e-22	78.1	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
DUF3829	PF12889.7	gi|564289677|ref|YP_008875932.1|	-	0.053	13.0	0.6	0.079	12.4	0.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
3HCDH_N	PF02737.18	gi|564289678|ref|YP_008875933.1|	-	3.3e-63	212.8	3.8	4.1e-63	212.5	3.8	1.1	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.22	gi|564289678|ref|YP_008875933.1|	-	2.9e-32	111.1	0.6	5e-31	107.2	0.0	2.6	2	1	1	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.15	gi|564289678|ref|YP_008875933.1|	-	3e-05	24.2	5.8	0.00027	21.2	5.8	2.0	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
HisG	PF01634.18	gi|564289678|ref|YP_008875933.1|	-	0.0017	18.3	2.1	0.0033	17.4	2.1	1.4	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
F420_oxidored	PF03807.17	gi|564289678|ref|YP_008875933.1|	-	0.0051	17.4	1.5	0.02	15.4	1.5	2.0	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.19	gi|564289678|ref|YP_008875933.1|	-	0.012	15.0	1.2	0.021	14.2	1.2	1.5	1	1	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564289678|ref|YP_008875933.1|	-	0.022	14.3	0.6	0.032	13.8	0.6	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.16	gi|564289678|ref|YP_008875933.1|	-	0.027	14.1	0.1	0.038	13.6	0.1	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.23	gi|564289678|ref|YP_008875933.1|	-	0.033	14.2	1.0	0.07	13.1	1.0	1.6	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
adh_short	PF00106.25	gi|564289678|ref|YP_008875933.1|	-	0.039	13.4	1.1	0.056	12.9	1.1	1.3	1	0	0	1	1	1	0	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564289678|ref|YP_008875933.1|	-	0.057	13.0	1.9	0.084	12.4	1.9	1.3	1	0	0	1	1	1	0	Enoyl-(Acyl	carrier	protein)	reductase
FBPase	PF00316.20	gi|564289679|ref|YP_008875934.1|	-	2.7e-28	98.7	0.1	4.6e-28	98.0	0.1	1.3	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
PKD	PF00801.20	gi|564289680|ref|YP_008875935.1|	-	2.6e-09	36.8	2.5	2.6e-09	36.8	2.5	3.9	3	1	0	3	3	3	1	PKD	domain
Big_3_3	PF13750.6	gi|564289680|ref|YP_008875935.1|	-	0.013	15.2	3.7	0.08	12.6	0.0	3.4	3	1	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
DUF1616	PF07760.11	gi|564289680|ref|YP_008875935.1|	-	0.036	13.4	2.5	0.75	9.1	0.7	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1616)
DUF5011	PF16403.5	gi|564289680|ref|YP_008875935.1|	-	0.26	11.4	2.5	1.1	9.4	0.2	3.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5011)
DUF3987	PF13148.6	gi|564289680|ref|YP_008875935.1|	-	0.95	8.4	2.9	1.4	7.8	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
DUF3099	PF11298.8	gi|564289681|ref|YP_008875936.1|	-	6.9	6.9	7.8	0.95	9.6	2.5	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3099)
ELFV_dehydrog	PF00208.21	gi|564289682|ref|YP_008875937.1|	-	1.3e-73	247.7	1.2	1.6e-73	247.4	1.2	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|564289682|ref|YP_008875937.1|	-	1.2e-55	186.9	0.0	2e-55	186.2	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|564289682|ref|YP_008875937.1|	-	0.0003	20.2	0.0	0.00058	19.3	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|564289682|ref|YP_008875937.1|	-	0.065	12.8	0.1	0.11	12.1	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AlaDh_PNT_C	PF01262.21	gi|564289682|ref|YP_008875937.1|	-	0.098	11.9	0.4	0.16	11.3	0.4	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF4817	PF16087.5	gi|564289682|ref|YP_008875937.1|	-	0.1	12.5	0.0	1.7	8.5	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain	(DUF4817)
DUF4251	PF14059.6	gi|564289682|ref|YP_008875937.1|	-	0.16	11.9	0.3	11	5.9	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4251)
Polyketide_cyc	PF03364.20	gi|564289683|ref|YP_008875938.1|	-	2.4e-07	31.0	0.0	3.4e-07	30.5	0.0	1.2	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
EamA	PF00892.20	gi|564289684|ref|YP_008875939.1|	-	4.2e-28	98.2	30.9	1.1e-15	58.0	8.8	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|564289684|ref|YP_008875939.1|	-	0.22	10.8	9.4	0.24	10.7	2.2	2.4	2	1	0	2	2	2	0	Triose-phosphate	Transporter	family
SLC35F	PF06027.12	gi|564289684|ref|YP_008875939.1|	-	1.3	8.5	6.6	0.12	11.8	0.8	1.9	2	1	1	3	3	3	0	Solute	carrier	family	35
RIO1	PF01163.22	gi|564289685|ref|YP_008875940.1|	-	1.1e-09	38.1	0.0	1.7e-09	37.6	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
Kdo	PF06293.14	gi|564289685|ref|YP_008875940.1|	-	2.1e-05	24.0	0.0	3.1e-05	23.4	0.0	1.2	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.23	gi|564289685|ref|YP_008875940.1|	-	3.8e-05	23.7	1.0	0.043	13.7	0.2	2.3	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
WaaY	PF06176.11	gi|564289685|ref|YP_008875940.1|	-	0.066	12.8	0.0	0.089	12.4	0.0	1.1	1	0	0	1	1	1	0	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Kinase-PolyVal	PF18762.1	gi|564289685|ref|YP_008875940.1|	-	0.12	12.3	0.1	0.19	11.7	0.1	1.3	1	0	0	1	1	1	0	Serine/Threonine/Tyrosine	Kinase	found	in	polyvalent	proteins
Pkinase	PF00069.25	gi|564289685|ref|YP_008875940.1|	-	0.19	11.1	0.0	0.26	10.6	0.0	1.2	1	0	0	1	1	1	0	Protein	kinase	domain
Acyl-CoA_dh_1	PF00441.24	gi|564289686|ref|YP_008875941.1|	-	1.5e-46	158.3	0.3	2.1e-46	157.8	0.3	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|564289686|ref|YP_008875941.1|	-	1.1e-37	129.1	0.1	2e-37	128.3	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564289686|ref|YP_008875941.1|	-	5.3e-25	87.5	0.0	1.1e-24	86.4	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|564289686|ref|YP_008875941.1|	-	2.2e-17	63.6	0.3	3.1e-17	63.1	0.3	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Usp	PF00582.26	gi|564289687|ref|YP_008875942.1|	-	1.2e-13	51.7	4.7	1.4e-13	51.5	4.7	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
CAP59_mtransfer	PF11735.8	gi|564289687|ref|YP_008875942.1|	-	0.021	14.5	0.0	0.025	14.2	0.0	1.1	1	0	0	1	1	1	0	Cryptococcal	mannosyltransferase	1
RtcB	PF01139.17	gi|564289688|ref|YP_008875943.1|	-	4.7e-58	197.3	0.0	5.4e-29	101.6	0.0	2.1	2	0	0	2	2	2	2	tRNA-splicing	ligase	RtcB
MgtE_N	PF03448.17	gi|564289688|ref|YP_008875943.1|	-	0.14	12.8	0.1	1.5	9.4	0.0	2.7	3	1	0	3	3	3	0	MgtE	intracellular	N	domain
DoxX	PF07681.12	gi|564289689|ref|YP_008875944.1|	-	2.2e-08	34.5	9.1	2.2e-08	34.5	9.1	1.7	2	0	0	2	2	2	1	DoxX
DoxD	PF04173.13	gi|564289689|ref|YP_008875944.1|	-	5.8e-05	23.1	9.4	0.0003	20.7	9.4	1.9	1	1	0	1	1	1	1	TQO	small	subunit	DoxD
VKG_Carbox	PF05090.14	gi|564289689|ref|YP_008875944.1|	-	0.026	13.4	0.6	0.026	13.4	0.6	1.8	1	1	0	2	2	2	0	Vitamin	K-dependent	gamma-carboxylase
Borrelia_P13	PF05628.12	gi|564289690|ref|YP_008875945.1|	-	0.076	13.0	0.5	0.1	12.6	0.5	1.2	1	0	0	1	1	1	0	Borrelia	membrane	protein	P13
YdjM	PF04307.14	gi|564289691|ref|YP_008875946.1|	-	4.4e-08	32.6	1.2	6.8e-08	32.0	1.2	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
CDP-OH_P_transf	PF01066.21	gi|564289692|ref|YP_008875947.1|	-	2.1e-08	34.8	2.9	2.1e-08	34.8	2.9	3.0	2	1	0	2	2	2	1	CDP-alcohol	phosphatidyltransferase
Abhydrolase_6	PF12697.7	gi|564289693|ref|YP_008875948.1|	-	5.4e-16	59.9	11.6	6.3e-16	59.7	11.6	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|564289693|ref|YP_008875948.1|	-	5.1e-12	45.6	0.2	9.1e-12	44.8	0.2	1.4	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|564289693|ref|YP_008875948.1|	-	2e-08	34.2	0.1	0.0042	16.8	0.0	2.2	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.10	gi|564289693|ref|YP_008875948.1|	-	0.019	15.1	0.0	0.047	13.8	0.0	1.7	1	1	0	1	1	1	0	TAP-like	protein
Abhydrolase_5	PF12695.7	gi|564289693|ref|YP_008875948.1|	-	0.13	12.0	0.0	0.94	9.2	0.0	2.0	2	0	0	2	2	2	0	Alpha/beta	hydrolase	family
AAA	PF00004.29	gi|564289695|ref|YP_008875950.1|	-	5.2e-100	331.1	0.0	2.2e-49	167.3	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|564289695|ref|YP_008875950.1|	-	1.5e-26	91.9	4.8	6.7e-15	54.6	0.8	3.1	2	1	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|564289695|ref|YP_008875950.1|	-	3.4e-25	88.0	0.0	2.5e-24	85.3	0.1	2.4	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_2	PF07724.14	gi|564289695|ref|YP_008875950.1|	-	1.6e-18	67.4	0.1	2e-09	37.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.12	gi|564289695|ref|YP_008875950.1|	-	2.9e-16	59.6	0.0	8.7e-08	32.1	0.0	2.6	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
CDC48_2	PF02933.17	gi|564289695|ref|YP_008875950.1|	-	4.1e-15	55.3	0.3	1.1e-14	54.0	0.3	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.6	gi|564289695|ref|YP_008875950.1|	-	3.9e-13	50.2	0.0	3.6e-06	27.5	0.0	3.4	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA_5	PF07728.14	gi|564289695|ref|YP_008875950.1|	-	6.8e-11	42.3	1.1	0.00012	22.1	0.1	4.0	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|564289695|ref|YP_008875950.1|	-	7e-11	42.6	0.2	0.0023	18.2	0.1	3.7	2	2	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|564289695|ref|YP_008875950.1|	-	9.5e-11	42.0	0.0	0.00019	21.6	0.0	2.8	2	1	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|564289695|ref|YP_008875950.1|	-	4.6e-10	39.6	0.0	0.00073	19.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|564289695|ref|YP_008875950.1|	-	6.8e-10	38.7	0.0	0.0002	20.7	0.0	2.6	2	0	0	2	2	2	2	TIP49	P-loop	domain
IstB_IS21	PF01695.17	gi|564289695|ref|YP_008875950.1|	-	3.2e-08	33.5	0.0	0.0023	17.7	0.0	2.7	3	0	0	3	3	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|564289695|ref|YP_008875950.1|	-	2.3e-07	31.2	0.0	0.032	14.6	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_7	PF12775.7	gi|564289695|ref|YP_008875950.1|	-	3.7e-07	29.8	0.0	0.037	13.6	0.0	2.6	2	1	0	2	2	2	2	P-loop	containing	dynein	motor	region
Mg_chelatase	PF01078.21	gi|564289695|ref|YP_008875950.1|	-	5e-07	29.3	0.4	0.014	14.8	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
DUF815	PF05673.13	gi|564289695|ref|YP_008875950.1|	-	7.2e-07	28.6	0.0	0.0025	17.0	0.0	3.0	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
AAA_18	PF13238.6	gi|564289695|ref|YP_008875950.1|	-	2e-06	28.3	0.0	0.14	12.7	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|564289695|ref|YP_008875950.1|	-	3.3e-06	26.6	0.1	0.26	10.6	0.0	3.6	2	1	1	3	3	3	2	KaiC
AAA_25	PF13481.6	gi|564289695|ref|YP_008875950.1|	-	4.3e-06	26.4	0.7	2.4	7.7	0.0	4.1	3	1	0	3	3	3	1	AAA	domain
AAA_28	PF13521.6	gi|564289695|ref|YP_008875950.1|	-	4.3e-06	27.1	0.0	0.076	13.3	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.11	gi|564289695|ref|YP_008875950.1|	-	4.6e-06	26.5	0.0	0.037	13.9	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|564289695|ref|YP_008875950.1|	-	7.3e-06	25.8	0.0	0.17	11.5	0.0	3.3	3	1	0	3	3	2	2	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|564289695|ref|YP_008875950.1|	-	1.2e-05	25.3	0.0	0.22	11.5	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
PhoH	PF02562.16	gi|564289695|ref|YP_008875950.1|	-	1.6e-05	24.4	0.1	0.056	12.9	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
AAA_11	PF13086.6	gi|564289695|ref|YP_008875950.1|	-	1.8e-05	24.7	0.0	0.14	11.9	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.12	gi|564289695|ref|YP_008875950.1|	-	1.9e-05	24.6	0.1	0.87	9.5	0.0	3.6	3	0	0	3	3	3	2	NACHT	domain
ABC_tran	PF00005.27	gi|564289695|ref|YP_008875950.1|	-	2.2e-05	25.0	0.0	0.16	12.4	0.0	2.7	2	0	0	2	2	2	2	ABC	transporter
AAA_24	PF13479.6	gi|564289695|ref|YP_008875950.1|	-	4.5e-05	23.3	0.1	0.19	11.4	0.0	2.8	3	0	0	3	3	2	2	AAA	domain
AAA_30	PF13604.6	gi|564289695|ref|YP_008875950.1|	-	4.8e-05	23.2	0.0	0.21	11.3	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
DUF2075	PF09848.9	gi|564289695|ref|YP_008875950.1|	-	8.1e-05	22.0	0.0	0.33	10.2	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
Zeta_toxin	PF06414.12	gi|564289695|ref|YP_008875950.1|	-	0.0001	21.7	0.1	0.28	10.4	0.0	2.4	2	0	0	2	2	2	2	Zeta	toxin
Parvo_NS1	PF01057.17	gi|564289695|ref|YP_008875950.1|	-	0.00022	20.4	0.1	0.63	9.1	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
NB-ARC	PF00931.22	gi|564289695|ref|YP_008875950.1|	-	0.00025	20.3	0.0	0.85	8.8	0.0	2.6	2	0	0	2	2	2	2	NB-ARC	domain
Bac_DnaA	PF00308.18	gi|564289695|ref|YP_008875950.1|	-	0.00031	20.6	0.0	0.22	11.4	0.0	2.6	2	1	0	2	2	2	1	Bacterial	dnaA	protein
Vps4_C	PF09336.10	gi|564289695|ref|YP_008875950.1|	-	0.00046	20.1	0.1	0.065	13.2	0.0	2.8	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_17	PF13207.6	gi|564289695|ref|YP_008875950.1|	-	0.00051	20.5	0.1	2.7	8.4	0.0	3.2	3	0	0	3	3	2	2	AAA	domain
AAA_19	PF13245.6	gi|564289695|ref|YP_008875950.1|	-	0.0012	19.2	1.0	2.6	8.4	0.0	2.9	2	1	1	3	3	2	1	AAA	domain
ATPase_2	PF01637.18	gi|564289695|ref|YP_008875950.1|	-	0.0013	18.7	0.0	0.78	9.6	0.0	2.9	2	2	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
NTPase_1	PF03266.15	gi|564289695|ref|YP_008875950.1|	-	0.0016	18.4	2.1	1.3	8.9	0.0	3.7	3	1	1	4	4	3	1	NTPase
Sigma54_activ_2	PF14532.6	gi|564289695|ref|YP_008875950.1|	-	0.0037	17.4	0.0	3.5	7.8	0.0	2.9	3	0	0	3	3	2	0	Sigma-54	interaction	domain
T2SSE	PF00437.20	gi|564289695|ref|YP_008875950.1|	-	0.0048	16.0	0.0	2.4	7.2	0.0	3.1	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
ResIII	PF04851.15	gi|564289695|ref|YP_008875950.1|	-	0.011	15.8	0.0	4.1	7.4	0.0	2.7	2	1	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Guanylate_kin	PF00625.21	gi|564289695|ref|YP_008875950.1|	-	0.023	14.4	0.2	31	4.2	0.0	3.7	2	1	1	3	3	3	0	Guanylate	kinase
AFG1_ATPase	PF03969.16	gi|564289695|ref|YP_008875950.1|	-	0.025	13.5	0.0	4.5	6.1	0.0	2.7	3	0	0	3	3	2	0	AFG1-like	ATPase
Zot	PF05707.12	gi|564289695|ref|YP_008875950.1|	-	0.027	14.1	0.0	1.3	8.6	0.0	2.6	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Rad17	PF03215.15	gi|564289695|ref|YP_008875950.1|	-	0.037	13.9	0.0	6.8	6.6	0.0	2.6	2	1	0	2	2	2	0	Rad17	P-loop	domain
ATP-synt_ab	PF00006.25	gi|564289695|ref|YP_008875950.1|	-	0.044	13.4	0.0	2.2	7.9	0.0	2.4	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Cytidylate_kin	PF02224.18	gi|564289695|ref|YP_008875950.1|	-	0.044	13.5	0.2	14	5.4	0.0	2.7	3	0	0	3	3	2	0	Cytidylate	kinase
Torsin	PF06309.11	gi|564289695|ref|YP_008875950.1|	-	0.11	12.6	0.0	5.5	7.1	0.0	2.4	2	0	0	2	2	2	0	Torsin
PIF1	PF05970.14	gi|564289695|ref|YP_008875950.1|	-	0.11	11.6	0.0	3.2	6.8	0.0	2.3	2	0	0	2	2	2	0	PIF1-like	helicase
TniB	PF05621.11	gi|564289695|ref|YP_008875950.1|	-	0.12	11.7	0.0	28	4.0	0.0	3.1	2	1	1	3	3	3	0	Bacterial	TniB	protein
Viral_helicase1	PF01443.18	gi|564289695|ref|YP_008875950.1|	-	0.15	11.8	0.0	17	5.1	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_29	PF13555.6	gi|564289695|ref|YP_008875950.1|	-	0.16	11.7	0.0	28	4.6	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
COOH-NH2_lig	PF14395.6	gi|564289695|ref|YP_008875950.1|	-	0.17	11.0	0.9	8.4	5.5	0.0	2.7	3	0	0	3	3	3	0	Phage	phiEco32-like	COOH.NH2	ligase-type	2
ApoC-I	PF04691.12	gi|564289695|ref|YP_008875950.1|	-	0.2	11.6	0.1	1.5	8.8	0.0	2.5	2	0	0	2	2	2	0	Apolipoprotein	C-I	(ApoC-1)
Regulator_TrmB	PF11495.8	gi|564289696|ref|YP_008875951.1|	-	3.5e-59	199.8	0.0	3.9e-59	199.7	0.0	1.0	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
HisKA	PF00512.25	gi|564289697|ref|YP_008875952.1|	-	2e-12	46.9	1.3	1.5e-11	44.2	2.0	2.1	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|564289697|ref|YP_008875952.1|	-	7.6e-10	39.2	0.5	3.8e-09	37.0	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|564289697|ref|YP_008875952.1|	-	1e-05	25.9	0.1	2.7e-05	24.5	0.0	1.8	2	0	0	2	2	2	1	GAF	domain
Response_reg	PF00072.24	gi|564289697|ref|YP_008875952.1|	-	4.1e-05	23.7	0.0	0.0001	22.4	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF	PF01590.26	gi|564289697|ref|YP_008875952.1|	-	0.00044	20.9	0.1	0.0011	19.6	0.1	1.7	1	0	0	1	1	1	1	GAF	domain
baeRF_family8	PF18851.1	gi|564289697|ref|YP_008875952.1|	-	0.02	15.0	0.5	0.076	13.1	0.1	2.1	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	8
DUF420	PF04238.12	gi|564289698|ref|YP_008875953.1|	-	9.4e-35	119.8	5.3	1.4e-34	119.2	5.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF420)
DUF2306	PF10067.9	gi|564289698|ref|YP_008875953.1|	-	1.3e-05	25.5	5.3	1.9e-05	24.9	2.8	2.2	1	1	1	2	2	2	1	Predicted	membrane	protein	(DUF2306)
DUF2897	PF11446.8	gi|564289698|ref|YP_008875953.1|	-	4.5	7.2	4.7	2.7	7.9	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2897)
Acetyltransf_3	PF13302.7	gi|564289699|ref|YP_008875954.1|	-	1e-23	84.5	0.0	1.2e-23	84.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564289699|ref|YP_008875954.1|	-	8.2e-09	35.8	0.0	3.3e-08	33.8	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564289699|ref|YP_008875954.1|	-	1.4e-08	35.0	0.0	1.8e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
GNAT_acetyltran	PF12746.7	gi|564289699|ref|YP_008875954.1|	-	0.00062	19.4	0.0	0.00087	18.9	0.0	1.1	1	0	0	1	1	1	1	GNAT	acetyltransferase
Acetyltransf_8	PF13523.6	gi|564289699|ref|YP_008875954.1|	-	0.0037	17.0	0.2	0.01	15.5	0.2	1.6	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289699|ref|YP_008875954.1|	-	0.14	12.2	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	FR47-like	protein
GATase_7	PF13537.6	gi|564289700|ref|YP_008875955.1|	-	3.3e-18	65.8	0.0	7.6e-18	64.6	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|564289700|ref|YP_008875955.1|	-	9.8e-18	64.7	0.0	2e-17	63.7	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
Pribosyltran	PF00156.27	gi|564289700|ref|YP_008875955.1|	-	6e-07	29.1	0.1	1.3e-06	28.0	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_4	PF13230.6	gi|564289700|ref|YP_008875955.1|	-	0.00065	18.7	0.0	0.0014	17.6	0.0	1.5	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
Ribosomal_L37e	PF01907.19	gi|564289701|ref|YP_008875956.1|	-	2e-22	79.1	13.0	2.2e-22	78.9	13.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
zf-piccolo	PF05715.13	gi|564289701|ref|YP_008875956.1|	-	0.0062	16.7	4.1	0.023	14.8	4.1	1.8	1	1	0	1	1	1	1	Piccolo	Zn-finger
DZR	PF12773.7	gi|564289701|ref|YP_008875956.1|	-	0.0087	16.1	3.3	0.012	15.7	3.3	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564289701|ref|YP_008875956.1|	-	0.069	12.6	2.5	4.9	6.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289701|ref|YP_008875956.1|	-	0.083	12.8	4.7	0.1	12.5	4.7	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
HypA	PF01155.19	gi|564289701|ref|YP_008875956.1|	-	0.093	12.8	2.3	0.1	12.6	2.3	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_2	PF13240.6	gi|564289701|ref|YP_008875956.1|	-	0.2	11.4	6.6	1	9.2	6.0	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
LSM	PF01423.22	gi|564289702|ref|YP_008875957.1|	-	4.7e-15	55.0	0.7	7.9e-13	47.9	0.7	2.0	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.6	gi|564289702|ref|YP_008875957.1|	-	4.3e-05	23.6	0.3	0.00047	20.2	0.1	1.9	1	1	1	2	2	2	1	Ataxin	2	SM	domain
DUF150_C	PF17384.2	gi|564289702|ref|YP_008875957.1|	-	0.0011	19.1	0.1	0.0013	18.8	0.1	1.1	1	0	0	1	1	1	1	RimP	C-terminal	SH3	domain
DUF2642	PF10842.8	gi|564289702|ref|YP_008875957.1|	-	0.0038	17.0	0.0	0.0051	16.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2642)
Hfq	PF17209.3	gi|564289702|ref|YP_008875957.1|	-	0.012	15.2	0.0	0.013	15.1	0.0	1.1	1	0	0	1	1	1	0	Hfq	protein
BPL_C	PF02237.17	gi|564289702|ref|YP_008875957.1|	-	0.1	12.5	0.6	0.14	12.1	0.6	1.4	1	1	0	1	1	1	0	Biotin	protein	ligase	C	terminal	domain
Peptidase_M42	PF05343.14	gi|564289703|ref|YP_008875958.1|	-	5.6e-79	265.2	2.6	6.4e-79	265.0	2.6	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.28	gi|564289703|ref|YP_008875958.1|	-	4.5e-10	39.6	0.3	7.1e-10	38.9	0.3	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M18	PF02127.15	gi|564289703|ref|YP_008875958.1|	-	3.1e-06	26.2	0.0	0.00085	18.2	0.0	2.3	1	1	1	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
ADH_zinc_N	PF00107.26	gi|564289703|ref|YP_008875958.1|	-	0.06	13.3	2.4	0.4	10.7	0.2	2.4	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Adeno_E3	PF06040.11	gi|564289704|ref|YP_008875959.1|	-	0.2	11.8	0.0	0.24	11.6	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	E3	protein
Zincin_2	PF10103.9	gi|564289705|ref|YP_008875961.1|	-	4.5e-64	216.8	5.2	6.5e-34	117.7	0.9	2.0	1	1	1	2	2	2	2	Zincin-like	metallopeptidase
HrcA_DNA-bdg	PF03444.15	gi|564289706|ref|YP_008875962.1|	-	1.8e-31	107.6	0.0	2.6e-31	107.1	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_11	PF08279.12	gi|564289706|ref|YP_008875962.1|	-	5.4e-08	32.7	0.0	8.5e-08	32.0	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
Rrf2	PF02082.20	gi|564289706|ref|YP_008875962.1|	-	1.6e-07	31.5	0.0	3.5e-07	30.5	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|564289706|ref|YP_008875962.1|	-	0.00051	19.9	0.0	0.0011	18.8	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564289706|ref|YP_008875962.1|	-	0.0019	18.3	0.0	0.0031	17.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.16	gi|564289706|ref|YP_008875962.1|	-	0.062	13.1	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_IclR	PF09339.10	gi|564289706|ref|YP_008875962.1|	-	0.072	12.9	0.3	0.15	11.9	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564289706|ref|YP_008875962.1|	-	0.1	12.2	0.0	0.17	11.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_15	PF12324.8	gi|564289706|ref|YP_008875962.1|	-	0.1	12.5	0.1	0.9	9.5	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	alkylmercury	lyase
MarR_2	PF12802.7	gi|564289706|ref|YP_008875962.1|	-	0.13	12.2	0.0	0.29	11.0	0.0	1.7	1	0	0	1	1	1	0	MarR	family
Phosphodiest	PF01663.22	gi|564289707|ref|YP_008875963.1|	-	2.7e-37	129.2	0.1	3.9e-36	125.4	0.1	2.0	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
zf-C2H2	PF00096.26	gi|564289709|ref|YP_008875965.1|	-	0.0021	18.4	0.1	0.0031	17.9	0.1	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-met	PF12874.7	gi|564289709|ref|YP_008875965.1|	-	0.014	15.8	0.1	0.018	15.4	0.1	1.2	1	0	0	1	1	1	0	Zinc-finger	of	C2H2	type
zf-C2H2_jaz	PF12171.8	gi|564289709|ref|YP_008875965.1|	-	0.016	15.5	0.2	0.021	15.1	0.2	1.2	1	0	0	1	1	1	0	Zinc-finger	double-stranded	RNA-binding
zf-C2H2_3	PF13878.6	gi|564289709|ref|YP_008875965.1|	-	0.18	11.6	3.2	0.31	10.9	3.2	1.5	1	1	0	1	1	1	0	zinc-finger	of	acetyl-transferase	ESCO
AAA	PF00004.29	gi|564289710|ref|YP_008875966.1|	-	1e-93	310.7	0.0	1.3e-45	155.1	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|564289710|ref|YP_008875966.1|	-	6.8e-30	102.6	6.0	1.4e-14	53.6	0.4	2.6	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_N	PF02359.18	gi|564289710|ref|YP_008875966.1|	-	6.9e-22	77.4	0.3	4.7e-21	74.7	0.2	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_16	PF13191.6	gi|564289710|ref|YP_008875966.1|	-	4.7e-16	59.6	0.8	2e-07	31.5	0.0	4.0	2	1	0	3	3	3	2	AAA	ATPase	domain
RuvB_N	PF05496.12	gi|564289710|ref|YP_008875966.1|	-	7.2e-16	58.3	0.0	6.4e-07	29.2	0.0	3.3	3	1	0	3	3	3	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_2	PF07724.14	gi|564289710|ref|YP_008875966.1|	-	2e-12	47.6	0.0	5e-06	26.7	0.0	2.6	2	1	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.6	gi|564289710|ref|YP_008875966.1|	-	8.2e-12	45.5	0.0	0.00015	21.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.6	gi|564289710|ref|YP_008875966.1|	-	9.7e-12	45.3	1.3	0.011	16.0	0.0	4.4	2	2	1	3	3	3	2	AAA	domain
AAA_5	PF07728.14	gi|564289710|ref|YP_008875966.1|	-	1.7e-10	41.0	1.0	0.00071	19.6	0.0	3.7	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
TIP49	PF06068.13	gi|564289710|ref|YP_008875966.1|	-	5.8e-09	35.6	0.0	0.0031	16.8	0.0	2.6	3	0	0	3	3	2	2	TIP49	P-loop	domain
AAA_18	PF13238.6	gi|564289710|ref|YP_008875966.1|	-	4.1e-08	33.9	0.0	0.015	15.8	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.6	gi|564289710|ref|YP_008875966.1|	-	3.6e-07	30.3	0.0	0.013	15.5	0.0	2.7	3	0	0	3	3	2	2	AAA	domain
AAA_28	PF13521.6	gi|564289710|ref|YP_008875966.1|	-	3.7e-07	30.5	0.1	0.013	15.7	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.17	gi|564289710|ref|YP_008875966.1|	-	6.1e-07	29.3	0.0	0.028	14.1	0.0	2.6	2	1	0	2	2	2	2	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|564289710|ref|YP_008875966.1|	-	1.8e-06	28.3	0.0	0.1	13.0	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.21	gi|564289710|ref|YP_008875966.1|	-	1.9e-06	27.4	0.2	0.057	12.8	0.1	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|564289710|ref|YP_008875966.1|	-	3.6e-06	26.8	0.0	0.29	10.8	0.0	3.6	3	1	0	3	3	3	2	Sigma-54	interaction	domain
DUF815	PF05673.13	gi|564289710|ref|YP_008875966.1|	-	4e-06	26.2	0.0	0.001	18.3	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
TsaE	PF02367.17	gi|564289710|ref|YP_008875966.1|	-	7.2e-06	26.0	0.0	0.16	12.0	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
NACHT	PF05729.12	gi|564289710|ref|YP_008875966.1|	-	3.7e-05	23.7	0.4	3.2	7.6	0.0	3.7	4	0	0	4	4	4	2	NACHT	domain
AAA_11	PF13086.6	gi|564289710|ref|YP_008875966.1|	-	4e-05	23.6	0.0	0.091	12.5	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.11	gi|564289710|ref|YP_008875966.1|	-	4.1e-05	23.4	0.0	0.11	12.3	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|564289710|ref|YP_008875966.1|	-	4.3e-05	23.3	0.0	0.14	11.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|564289710|ref|YP_008875966.1|	-	6.2e-05	23.5	0.0	0.61	10.6	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
ATPase	PF06745.13	gi|564289710|ref|YP_008875966.1|	-	9.9e-05	21.8	0.2	1.4	8.2	0.0	3.8	3	1	1	4	4	4	2	KaiC
AAA_25	PF13481.6	gi|564289710|ref|YP_008875966.1|	-	0.0001	22.0	10.4	0.58	9.7	1.4	4.6	2	2	2	4	4	4	2	AAA	domain
Zeta_toxin	PF06414.12	gi|564289710|ref|YP_008875966.1|	-	0.00014	21.2	0.0	0.27	10.5	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
AAA_7	PF12775.7	gi|564289710|ref|YP_008875966.1|	-	0.00015	21.4	0.0	0.31	10.5	0.0	2.7	3	0	0	3	3	3	2	P-loop	containing	dynein	motor	region
Parvo_NS1	PF01057.17	gi|564289710|ref|YP_008875966.1|	-	0.00017	20.8	0.0	0.34	9.9	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
PhoH	PF02562.16	gi|564289710|ref|YP_008875966.1|	-	0.00018	21.0	0.0	0.86	9.0	0.0	2.8	2	0	0	2	2	2	2	PhoH-like	protein
AAA_19	PF13245.6	gi|564289710|ref|YP_008875966.1|	-	0.00028	21.3	0.0	0.39	11.1	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
DUF2075	PF09848.9	gi|564289710|ref|YP_008875966.1|	-	0.00045	19.6	0.0	0.32	10.2	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
NB-ARC	PF00931.22	gi|564289710|ref|YP_008875966.1|	-	0.00051	19.3	0.0	0.28	10.3	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
CDC48_2	PF02933.17	gi|564289710|ref|YP_008875966.1|	-	0.00061	19.5	1.0	0.00061	19.5	1.0	2.5	2	1	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
Sigma54_activ_2	PF14532.6	gi|564289710|ref|YP_008875966.1|	-	0.00082	19.5	0.0	0.37	10.9	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
CPT	PF07931.12	gi|564289710|ref|YP_008875966.1|	-	0.0013	18.6	0.1	1	9.2	0.0	3.1	3	0	0	3	3	2	1	Chloramphenicol	phosphotransferase-like	protein
AAA_30	PF13604.6	gi|564289710|ref|YP_008875966.1|	-	0.0016	18.2	4.7	0.44	10.3	0.8	3.6	3	1	0	3	3	3	1	AAA	domain
TniB	PF05621.11	gi|564289710|ref|YP_008875966.1|	-	0.0033	16.8	0.0	20	4.5	0.0	3.9	3	1	1	4	4	4	0	Bacterial	TniB	protein
AAA_17	PF13207.6	gi|564289710|ref|YP_008875966.1|	-	0.0048	17.3	0.0	2.4	8.6	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
ATPase_2	PF01637.18	gi|564289710|ref|YP_008875966.1|	-	0.0088	16.0	0.0	0.9	9.4	0.0	2.9	2	2	0	2	2	2	1	ATPase	domain	predominantly	from	Archaea
Cytidylate_kin	PF02224.18	gi|564289710|ref|YP_008875966.1|	-	0.022	14.5	0.0	5.3	6.7	0.0	2.9	2	0	0	2	2	2	0	Cytidylate	kinase
NTPase_1	PF03266.15	gi|564289710|ref|YP_008875966.1|	-	0.052	13.5	0.2	15	5.4	0.0	3.2	2	2	1	3	3	3	0	NTPase
DUF1905	PF08922.11	gi|564289710|ref|YP_008875966.1|	-	0.055	13.5	0.1	0.14	12.2	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
Torsin	PF06309.11	gi|564289710|ref|YP_008875966.1|	-	0.11	12.6	0.0	2.8	8.1	0.0	2.3	2	0	0	2	2	2	0	Torsin
AFG1_ATPase	PF03969.16	gi|564289710|ref|YP_008875966.1|	-	0.12	11.3	0.0	6.9	5.4	0.0	2.5	2	0	0	2	2	2	0	AFG1-like	ATPase
Viral_helicase1	PF01443.18	gi|564289710|ref|YP_008875966.1|	-	0.18	11.5	0.0	1.9	8.2	0.0	2.1	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Zot	PF05707.12	gi|564289710|ref|YP_008875966.1|	-	0.24	11.0	0.2	25	4.4	0.0	3.2	2	2	2	4	4	4	0	Zonular	occludens	toxin	(Zot)
DUF4349	PF14257.6	gi|564289711|ref|YP_008875967.1|	-	5.7e-60	202.4	5.7	7.1e-60	202.1	5.7	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4349)
DivIC	PF04977.15	gi|564289711|ref|YP_008875967.1|	-	0.00023	20.9	7.0	1.3	8.9	1.7	3.2	2	1	1	3	3	3	3	Septum	formation	initiator
Spc7	PF08317.11	gi|564289711|ref|YP_008875967.1|	-	0.0011	18.0	0.7	0.0014	17.6	0.7	1.1	1	0	0	1	1	1	1	Spc7	kinetochore	protein
CENP-F_leu_zip	PF10473.9	gi|564289711|ref|YP_008875967.1|	-	0.016	15.2	5.7	0.026	14.5	5.7	1.3	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Lge1	PF11488.8	gi|564289711|ref|YP_008875967.1|	-	0.028	14.6	0.8	0.052	13.7	0.8	1.4	1	0	0	1	1	1	0	Transcriptional	regulatory	protein	LGE1
TNT	PF14021.6	gi|564289711|ref|YP_008875967.1|	-	0.054	14.1	0.0	0.18	12.4	0.0	1.8	1	0	0	1	1	1	0	Tuberculosis	necrotizing	toxin
ABC_tran_CTD	PF16326.5	gi|564289711|ref|YP_008875967.1|	-	0.076	13.3	4.3	0.27	11.5	1.0	2.4	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Spc24	PF08286.11	gi|564289711|ref|YP_008875967.1|	-	0.18	12.0	4.6	1.1	9.5	1.0	2.4	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
GAS	PF13851.6	gi|564289711|ref|YP_008875967.1|	-	0.21	10.9	3.5	0.31	10.4	3.5	1.1	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
TMF_TATA_bd	PF12325.8	gi|564289711|ref|YP_008875967.1|	-	0.35	11.1	8.5	0.27	11.5	2.8	2.2	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
CLZ	PF16526.5	gi|564289711|ref|YP_008875967.1|	-	0.56	10.6	6.2	1.1	9.7	1.1	2.4	1	1	1	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
XhlA	PF10779.9	gi|564289711|ref|YP_008875967.1|	-	0.99	9.7	3.8	6.7	7.0	0.7	2.5	1	1	1	2	2	2	0	Haemolysin	XhlA
ADIP	PF11559.8	gi|564289711|ref|YP_008875967.1|	-	2.1	8.4	7.3	1.6	8.8	3.0	2.0	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Phageshock_PspG	PF09583.10	gi|564289711|ref|YP_008875967.1|	-	2.4	8.5	8.8	0.21	11.9	2.4	2.0	2	0	0	2	2	2	0	Phage	shock	protein	G	(Phageshock_PspG)
DUF4140	PF13600.6	gi|564289711|ref|YP_008875967.1|	-	3.1	8.3	9.3	1.4e+02	3.0	9.3	2.4	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
Osmo_CC	PF08946.10	gi|564289711|ref|YP_008875967.1|	-	4.6	7.6	5.9	20	5.5	1.6	2.2	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
CN_hydrolase	PF00795.22	gi|564289712|ref|YP_008875968.1|	-	2e-48	165.0	0.0	2.2e-48	164.8	0.0	1.0	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Polyketide_cyc2	PF10604.9	gi|564289713|ref|YP_008875969.1|	-	5.5e-13	49.4	1.7	6.2e-13	49.2	1.7	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|564289713|ref|YP_008875969.1|	-	1.1e-06	28.8	0.3	1.3e-06	28.6	0.3	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.13	gi|564289713|ref|YP_008875969.1|	-	6.1e-06	26.0	0.0	7.9e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
AHSA1	PF08327.11	gi|564289713|ref|YP_008875969.1|	-	0.0068	16.6	1.8	0.064	13.5	1.8	2.1	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
HTH_AsnC-type	PF13404.6	gi|564289714|ref|YP_008875970.1|	-	0.00031	20.5	0.6	0.0032	17.2	0.6	2.1	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564289714|ref|YP_008875970.1|	-	0.0015	18.1	0.6	0.012	15.2	0.6	2.1	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
FaeA	PF04703.12	gi|564289714|ref|YP_008875970.1|	-	0.0064	16.8	0.0	0.008	16.5	0.0	1.1	1	0	0	1	1	1	1	FaeA-like	protein
HTH_20	PF12840.7	gi|564289714|ref|YP_008875970.1|	-	0.0066	16.5	0.1	0.0079	16.2	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
Put_DNA-bind_N	PF06971.13	gi|564289714|ref|YP_008875970.1|	-	0.0079	16.2	0.1	0.016	15.2	0.0	1.5	2	0	0	2	2	2	1	Putative	DNA-binding	protein	N-terminus
LexA_DNA_bind	PF01726.16	gi|564289714|ref|YP_008875970.1|	-	0.029	14.1	0.0	0.038	13.8	0.0	1.2	1	0	0	1	1	1	0	LexA	DNA	binding	domain
MarR_2	PF12802.7	gi|564289714|ref|YP_008875970.1|	-	0.042	13.7	0.0	0.056	13.3	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.6	gi|564289714|ref|YP_008875970.1|	-	0.058	13.4	0.0	0.081	12.9	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
TPPK_C	PF12555.8	gi|564289715|ref|YP_008875971.1|	-	0.31	11.1	7.5	1.9	8.6	3.3	2.1	2	0	0	2	2	2	0	Thiamine	pyrophosphokinase	C	terminal
LEA_2	PF03168.13	gi|564289716|ref|YP_008875972.1|	-	3.5e-17	62.8	0.5	3.9e-09	37.0	0.1	2.6	2	1	0	2	2	2	2	Late	embryogenesis	abundant	protein
DUF4307	PF14155.6	gi|564289716|ref|YP_008875972.1|	-	0.059	13.2	0.9	0.17	11.7	0.9	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
HalOD1	PF18545.1	gi|564289717|ref|YP_008875973.1|	-	4e-12	46.2	0.1	4.7e-12	46.0	0.1	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
PhoU	PF01895.19	gi|564289718|ref|YP_008875974.1|	-	1.7e-16	60.4	6.9	1.9e-13	50.7	0.1	2.3	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|564289718|ref|YP_008875974.1|	-	3.1e-06	27.0	0.0	6e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
NAD_kinase	PF01513.21	gi|564289719|ref|YP_008875975.1|	-	8.5e-54	182.7	0.5	1.2e-53	182.2	0.5	1.2	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.24	gi|564289719|ref|YP_008875975.1|	-	1.3e-07	31.3	1.0	5.2e-07	29.3	1.0	2.1	1	1	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
PFK	PF00365.20	gi|564289719|ref|YP_008875975.1|	-	0.0065	15.8	0.0	0.014	14.7	0.0	1.5	1	1	0	1	1	1	1	Phosphofructokinase
MoCF_biosynth	PF00994.24	gi|564289720|ref|YP_008875977.1|	-	1.6e-34	118.6	0.2	2.3e-34	118.1	0.2	1.2	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
AAA_lid_2	PF17863.1	gi|564289720|ref|YP_008875977.1|	-	0.095	12.6	0.3	8	6.4	0.0	2.5	2	0	0	2	2	2	0	AAA	lid	domain
HTH_IclR	PF09339.10	gi|564289721|ref|YP_008875978.1|	-	0.0054	16.5	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
DUF4897	PF16238.5	gi|564289721|ref|YP_008875978.1|	-	0.0061	16.4	0.1	0.0094	15.8	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4897)
HTH_24	PF13412.6	gi|564289721|ref|YP_008875978.1|	-	0.16	11.5	0.0	0.32	10.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
BPD_transp_2	PF02653.16	gi|564291327|ref|YP_008875979.1|	-	1.8e-39	135.5	42.3	1.8e-39	135.5	42.3	1.6	1	1	1	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|564289722|ref|YP_008875980.1|	-	7.8e-44	149.8	35.2	7.8e-44	149.8	35.2	2.3	2	1	1	3	3	3	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|564289723|ref|YP_008875981.1|	-	3.2e-29	102.2	0.0	4.3e-29	101.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289723|ref|YP_008875981.1|	-	1.1e-10	41.9	2.9	4e-05	23.6	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|564289723|ref|YP_008875981.1|	-	2.5e-07	30.5	0.0	5.8e-07	29.3	0.0	1.7	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.19	gi|564289723|ref|YP_008875981.1|	-	9e-05	22.0	0.6	0.34	10.3	0.3	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|564289723|ref|YP_008875981.1|	-	0.00027	21.5	1.2	0.00043	20.8	1.2	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|564289723|ref|YP_008875981.1|	-	0.0027	17.4	0.2	0.005	16.6	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|564289723|ref|YP_008875981.1|	-	0.011	15.5	0.1	0.016	15.0	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|564289723|ref|YP_008875981.1|	-	0.063	12.9	0.1	0.11	12.0	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564289723|ref|YP_008875981.1|	-	0.1	12.7	0.2	0.38	10.9	0.1	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|564289723|ref|YP_008875981.1|	-	0.13	12.2	0.3	0.41	10.5	0.1	1.8	2	0	0	2	2	2	0	RsgA	GTPase
AAA_25	PF13481.6	gi|564289723|ref|YP_008875981.1|	-	0.13	11.8	0.3	9.9	5.7	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|564289724|ref|YP_008875982.1|	-	1.5e-30	106.5	0.0	2.7e-30	105.7	0.0	1.4	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289724|ref|YP_008875982.1|	-	4.8e-11	43.0	0.3	9.4e-05	22.4	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564289724|ref|YP_008875982.1|	-	5.2e-05	22.8	0.1	0.002	17.6	0.1	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564289724|ref|YP_008875982.1|	-	0.0014	18.4	0.0	0.0027	17.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564289724|ref|YP_008875982.1|	-	0.0014	19.1	0.0	0.0021	18.5	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564289724|ref|YP_008875982.1|	-	0.0015	19.1	0.0	0.0022	18.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|564289724|ref|YP_008875982.1|	-	0.0029	17.2	0.0	0.0054	16.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564289724|ref|YP_008875982.1|	-	0.003	17.3	0.1	0.0068	16.1	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|564289724|ref|YP_008875982.1|	-	0.0032	17.2	0.0	0.03	14.0	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289724|ref|YP_008875982.1|	-	0.012	15.8	0.2	0.11	12.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|564289724|ref|YP_008875982.1|	-	0.043	14.0	0.0	0.12	12.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289724|ref|YP_008875982.1|	-	0.048	13.6	0.0	0.081	12.8	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_17	PF13207.6	gi|564289724|ref|YP_008875982.1|	-	0.049	14.0	0.4	0.34	11.3	0.1	2.3	2	1	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|564289724|ref|YP_008875982.1|	-	0.1	11.9	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_10	PF12846.7	gi|564289724|ref|YP_008875982.1|	-	0.13	11.2	0.0	0.24	10.3	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
Dynamin_N	PF00350.23	gi|564289724|ref|YP_008875982.1|	-	0.16	12.0	0.0	0.39	10.8	0.0	1.6	1	1	0	1	1	1	0	Dynamin	family
AAA_24	PF13479.6	gi|564289724|ref|YP_008875982.1|	-	0.17	11.6	0.0	0.27	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|564289724|ref|YP_008875982.1|	-	0.19	11.8	0.0	0.36	10.9	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564289724|ref|YP_008875982.1|	-	0.19	12.3	0.7	1.1	9.8	0.2	2.2	2	1	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564289724|ref|YP_008875982.1|	-	0.19	11.8	0.1	0.61	10.2	0.0	1.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_7	PF12775.7	gi|564289724|ref|YP_008875982.1|	-	0.22	11.1	0.1	0.32	10.5	0.1	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
NB-ARC	PF00931.22	gi|564289724|ref|YP_008875982.1|	-	0.23	10.6	0.2	0.33	10.1	0.2	1.2	1	0	0	1	1	1	0	NB-ARC	domain
SbcCD_C	PF13558.6	gi|564289724|ref|YP_008875982.1|	-	0.6	10.4	2.6	10	6.5	2.5	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Peripla_BP_6	PF13458.6	gi|564289725|ref|YP_008875983.1|	-	1.9e-27	96.8	14.5	3.1e-22	79.7	3.7	2.2	2	0	0	2	2	2	2	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|564289725|ref|YP_008875983.1|	-	8.3e-19	67.9	0.4	6.8e-14	51.7	0.1	2.2	2	0	0	2	2	2	2	Receptor	family	ligand	binding	region
TrbI	PF03743.14	gi|564289725|ref|YP_008875983.1|	-	0.12	12.2	5.6	0.12	12.2	0.7	2.5	2	0	0	2	2	2	0	Bacterial	conjugation	TrbI-like	protein
Sod_Fe_N	PF00081.22	gi|564289726|ref|YP_008875984.1|	-	4.2e-29	100.8	0.6	7.8e-29	100.0	0.6	1.4	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|564289726|ref|YP_008875984.1|	-	3.1e-28	97.9	0.0	4.7e-28	97.4	0.0	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
FAD_binding_7	PF03441.14	gi|564289727|ref|YP_008875985.1|	-	1.4e-78	263.1	2.4	1.9e-78	262.6	2.4	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|564289727|ref|YP_008875985.1|	-	1.9e-44	151.5	0.1	4.5e-44	150.3	0.0	1.6	2	0	0	2	2	2	1	DNA	photolyase
Amidohydro_2	PF04909.14	gi|564289727|ref|YP_008875985.1|	-	0.0003	20.7	1.7	0.00035	20.5	0.4	1.7	2	0	0	2	2	2	1	Amidohydrolase
ECH_1	PF00378.20	gi|564289728|ref|YP_008875986.1|	-	1.7e-55	188.0	0.0	2e-55	187.9	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564289728|ref|YP_008875986.1|	-	2.1e-33	116.2	0.1	1.3e-31	110.4	0.0	1.9	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
HTH_Tnp_Tc3_2	PF01498.18	gi|564289729|ref|YP_008875987.1|	-	6.2e-05	23.2	0.0	0.00011	22.4	0.0	1.4	1	0	0	1	1	1	1	Transposase
HTH_24	PF13412.6	gi|564289729|ref|YP_008875987.1|	-	0.0089	15.6	0.0	0.26	10.9	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564289729|ref|YP_008875987.1|	-	0.019	14.8	0.7	0.038	13.8	0.7	1.5	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_32	PF13565.6	gi|564289729|ref|YP_008875987.1|	-	0.021	15.4	0.0	0.044	14.4	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_20	PF12840.7	gi|564289729|ref|YP_008875987.1|	-	0.034	14.2	0.0	0.05	13.7	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Arg_repressor	PF01316.21	gi|564289729|ref|YP_008875987.1|	-	0.07	12.9	0.0	0.19	11.5	0.0	1.7	2	0	0	2	2	2	0	Arginine	repressor,	DNA	binding	domain
PqqD	PF05402.12	gi|564289729|ref|YP_008875987.1|	-	0.16	12.3	0.0	0.29	11.5	0.0	1.4	1	0	0	1	1	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
UPF0058	PF01893.16	gi|564289730|ref|YP_008875988.1|	-	3.4e-34	117.0	0.5	3.8e-34	116.8	0.5	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
RHH_1	PF01402.21	gi|564289731|ref|YP_008875989.1|	-	0.014	15.3	0.0	0.019	14.9	0.0	1.2	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
IclR	PF01614.18	gi|564289731|ref|YP_008875989.1|	-	0.19	11.6	0.0	0.23	11.3	0.0	1.1	1	0	0	1	1	1	0	Bacterial	transcriptional	regulator
Chorismate_bind	PF00425.18	gi|564289732|ref|YP_008875990.1|	-	2.3e-79	266.6	0.0	2.9e-79	266.3	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
DUF615	PF04751.14	gi|564289732|ref|YP_008875990.1|	-	0.051	13.6	0.0	0.12	12.4	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF615)
GETHR	PF05671.11	gi|564289732|ref|YP_008875990.1|	-	1.7	8.0	7.8	0.54	9.7	0.8	2.8	2	0	0	2	2	2	0	GETHR	pentapeptide	repeat	(5	copies)
TPP_enzyme_N	PF02776.18	gi|564289733|ref|YP_008875991.1|	-	1.1e-34	119.5	0.0	2.1e-34	118.6	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M_2	PF16582.5	gi|564289733|ref|YP_008875991.1|	-	8.6e-11	41.9	0.0	1.3e-10	41.4	0.0	1.2	1	0	0	1	1	1	1	Middle	domain	of	thiamine	pyrophosphate
TPP_enzyme_C	PF02775.21	gi|564289733|ref|YP_008875991.1|	-	2.4e-06	27.4	0.0	4.8e-06	26.4	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|564289733|ref|YP_008875991.1|	-	0.048	13.4	0.0	0.12	12.1	0.0	1.8	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	central	domain
DnaJ	PF00226.31	gi|564289734|ref|YP_008875992.1|	-	3.3e-15	56.0	0.1	5.1e-15	55.3	0.1	1.3	1	0	0	1	1	1	1	DnaJ	domain
NPR3	PF03666.13	gi|564289734|ref|YP_008875992.1|	-	0.56	8.9	2.4	0.69	8.6	2.4	1.1	1	0	0	1	1	1	0	Nitrogen	Permease	regulator	of	amino	acid	transport	activity	3
DPM3	PF08285.11	gi|564289734|ref|YP_008875992.1|	-	7	6.9	7.6	5.4e+02	0.9	7.6	2.7	1	1	0	1	1	1	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
S_4TM	PF18159.1	gi|564289735|ref|YP_008875993.1|	-	0.048	13.0	0.1	0.048	12.9	0.1	1.0	1	0	0	1	1	1	0	SMODS-associating	4TM	effector	domain
V_ATPase_I	PF01496.19	gi|564289735|ref|YP_008875993.1|	-	0.26	9.2	0.0	0.26	9.1	0.0	1.0	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF4834	PF16118.5	gi|564289735|ref|YP_008875993.1|	-	0.47	11.4	2.0	2.4	9.2	2.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4834)
ECH_1	PF00378.20	gi|564289736|ref|YP_008875994.1|	-	1.3e-57	194.9	0.0	2.6e-46	158.0	0.0	2.1	2	0	0	2	2	2	2	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564289736|ref|YP_008875994.1|	-	4.9e-16	59.1	0.0	1.2e-14	54.6	0.0	2.3	1	1	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
CAP	PF00188.26	gi|564289736|ref|YP_008875994.1|	-	0.062	14.1	0.0	0.49	11.2	0.0	2.3	1	1	1	2	2	2	0	Cysteine-rich	secretory	protein	family
MarR	PF01047.22	gi|564289737|ref|YP_008875995.1|	-	0.00041	20.2	0.0	0.00055	19.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|564289737|ref|YP_008875995.1|	-	0.00083	19.5	0.0	0.0012	19.0	0.0	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_27	PF13463.6	gi|564289737|ref|YP_008875995.1|	-	0.039	14.4	0.0	0.051	14.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|564289737|ref|YP_008875995.1|	-	0.073	13.0	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	MarR	family
TANGO2	PF05742.12	gi|564289738|ref|YP_008875996.1|	-	5.4e-26	92.2	0.0	3.4e-25	89.5	0.0	1.9	1	1	0	1	1	1	1	Transport	and	Golgi	organisation	2
AAT	PF03417.16	gi|564289738|ref|YP_008875996.1|	-	0.014	15.1	0.0	0.018	14.7	0.0	1.1	1	0	0	1	1	1	0	Acyl-coenzyme	A:6-aminopenicillanic	acid	acyl-transferase
AMP-binding	PF00501.28	gi|564289739|ref|YP_008875997.1|	-	2.3e-74	250.5	0.9	2.7e-74	250.3	0.9	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564289739|ref|YP_008875997.1|	-	2.9e-18	66.6	1.3	1.4e-17	64.4	1.5	2.1	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
MR_MLE_C	PF13378.6	gi|564291328|ref|YP_008875998.1|	-	1.6e-46	158.7	5.4	2.6e-46	158.0	5.4	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564291328|ref|YP_008875998.1|	-	9.7e-05	22.6	0.7	0.0021	18.2	0.3	2.8	2	1	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
UbiA	PF01040.18	gi|564289740|ref|YP_008875999.1|	-	5.9e-35	120.8	18.4	7.8e-35	120.4	18.4	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
AMP-binding	PF00501.28	gi|564289741|ref|YP_008876000.1|	-	2.4e-90	303.1	0.2	2.9e-90	302.9	0.2	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564289741|ref|YP_008876000.1|	-	4.8e-20	72.3	0.1	1.5e-19	70.7	0.1	1.9	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
PAS_9	PF13426.7	gi|564289742|ref|YP_008876001.1|	-	9.1e-37	125.5	0.2	1e-24	86.7	0.1	2.8	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|564289742|ref|YP_008876001.1|	-	2.4e-21	76.1	5.8	5.7e-11	42.7	0.1	3.5	3	1	1	4	4	4	2	PAS	fold
Response_reg	PF00072.24	gi|564289742|ref|YP_008876001.1|	-	1.8e-20	73.2	0.3	1.2e-19	70.5	0.0	2.5	3	0	0	3	3	3	1	Response	regulator	receiver	domain
PAS_3	PF08447.12	gi|564289742|ref|YP_008876001.1|	-	2.2e-20	72.7	0.1	4.4e-12	46.1	0.0	2.7	2	0	0	2	2	2	2	PAS	fold
PAS	PF00989.25	gi|564289742|ref|YP_008876001.1|	-	2.9e-20	72.3	0.1	2.9e-10	40.1	0.0	2.9	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|564289742|ref|YP_008876001.1|	-	1.7e-19	70.3	0.1	1.1e-18	67.7	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|564289742|ref|YP_008876001.1|	-	4.7e-16	58.4	0.3	3.3e-07	30.2	0.0	3.7	3	0	0	3	3	3	2	PAS	domain
GAF_2	PF13185.6	gi|564289742|ref|YP_008876001.1|	-	7.5e-13	49.0	1.4	1.1e-11	45.1	0.4	2.8	2	0	0	2	2	2	1	GAF	domain
HisKA	PF00512.25	gi|564289742|ref|YP_008876001.1|	-	2e-10	40.5	1.7	2e-10	40.5	1.7	2.5	3	0	0	3	3	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_3	PF13492.6	gi|564289742|ref|YP_008876001.1|	-	3.9e-09	36.9	0.0	1.6e-08	34.9	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
PAS_7	PF12860.7	gi|564289742|ref|YP_008876001.1|	-	1.9e-05	24.8	3.0	0.0027	17.9	0.0	3.8	4	1	0	4	4	4	1	PAS	fold
HATPase_c_3	PF13589.6	gi|564289742|ref|YP_008876001.1|	-	0.051	13.4	0.0	0.23	11.3	0.0	2.1	2	0	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Ndr	PF03096.14	gi|564289742|ref|YP_008876001.1|	-	0.14	10.8	0.1	0.25	10.0	0.1	1.3	1	0	0	1	1	1	0	Ndr	family
Cnn_1N	PF07989.11	gi|564289743|ref|YP_008876002.1|	-	0.091	12.9	2.4	0.16	12.1	0.0	2.0	2	0	0	2	2	2	0	Centrosomin	N-terminal	motif	1
Cwf_Cwc_15	PF04889.12	gi|564289743|ref|YP_008876002.1|	-	0.15	11.8	17.1	0.13	11.9	9.0	2.0	2	0	0	2	2	2	0	Cwf15/Cwc15	cell	cycle	control	protein
TPD52	PF04201.15	gi|564289743|ref|YP_008876002.1|	-	0.41	10.3	2.7	9.4	5.8	0.1	2.2	2	0	0	2	2	2	0	Tumour	protein	D52	family
SLATT_3	PF18184.1	gi|564289743|ref|YP_008876002.1|	-	0.73	10.0	5.0	7	6.8	1.2	2.1	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
DUF1980	PF09323.10	gi|564289744|ref|YP_008876003.1|	-	0.033	14.1	0.3	0.05	13.5	0.3	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1980)
PGF-CTERM	PF18204.1	gi|564289745|ref|YP_008876004.1|	-	0.0011	18.9	3.8	0.0019	18.1	3.8	1.4	1	0	0	1	1	1	1	PGF-CTERM	motif
CARDB	PF07705.11	gi|564289745|ref|YP_008876004.1|	-	0.011	15.9	1.8	0.049	13.9	0.1	2.3	2	1	0	2	2	2	0	CARDB
Glyco_hydro_2	PF00703.21	gi|564289745|ref|YP_008876004.1|	-	0.014	16.1	0.4	0.96	10.1	0.2	2.5	2	1	0	2	2	2	0	Glycosyl	hydrolases	family	2
Gram_pos_anchor	PF00746.21	gi|564289745|ref|YP_008876004.1|	-	0.053	13.5	0.1	0.053	13.5	0.1	2.0	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
DUF2797	PF10977.8	gi|564289746|ref|YP_008876005.1|	-	5.3e-24	85.4	6.0	6.8e-21	75.2	6.0	2.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2797)
PBP	PF01161.20	gi|564289747|ref|YP_008876006.1|	-	7.8e-32	110.4	0.1	9.5e-32	110.1	0.1	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Epimerase	PF01370.21	gi|564289748|ref|YP_008876007.1|	-	9.5e-51	172.6	0.0	1.1e-50	172.4	0.0	1.0	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564289748|ref|YP_008876007.1|	-	2.6e-39	135.6	0.0	1e-38	133.6	0.0	1.8	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|564289748|ref|YP_008876007.1|	-	1.7e-19	70.1	0.0	7.7e-19	67.9	0.0	1.9	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|564289748|ref|YP_008876007.1|	-	6.1e-19	68.2	0.0	7.8e-19	67.9	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|564289748|ref|YP_008876007.1|	-	2.2e-17	63.0	0.0	2.8e-17	62.7	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|564289748|ref|YP_008876007.1|	-	2.5e-14	53.6	0.0	7.3e-14	52.1	0.0	1.7	2	0	0	2	2	2	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|564289748|ref|YP_008876007.1|	-	1.1e-10	41.2	0.1	8.3e-07	28.4	0.1	2.8	1	1	0	1	1	1	1	Male	sterility	protein
TrkA_N	PF02254.18	gi|564289748|ref|YP_008876007.1|	-	8.7e-08	32.4	0.6	1.9e-07	31.3	0.6	1.5	1	0	0	1	1	1	1	TrkA-N	domain
NmrA	PF05368.13	gi|564289748|ref|YP_008876007.1|	-	6.5e-05	22.6	0.0	0.00035	20.2	0.0	1.8	2	0	0	2	2	2	1	NmrA-like	family
adh_short	PF00106.25	gi|564289748|ref|YP_008876007.1|	-	0.00018	21.0	0.1	0.011	15.2	0.0	2.3	2	0	0	2	2	2	1	short	chain	dehydrogenase
Ldh_1_N	PF00056.23	gi|564289748|ref|YP_008876007.1|	-	0.00047	20.3	0.1	0.00073	19.7	0.1	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564289748|ref|YP_008876007.1|	-	0.062	13.6	0.4	0.1	12.8	0.4	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Thioredoxin_4	PF13462.6	gi|564289749|ref|YP_008876008.1|	-	4.1e-32	111.6	0.0	5.7e-32	111.2	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.20	gi|564289749|ref|YP_008876008.1|	-	1.3e-11	44.7	1.2	2.4e-09	37.2	1.2	2.1	1	1	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.6	gi|564289749|ref|YP_008876008.1|	-	0.0061	17.0	0.4	0.021	15.3	0.4	1.8	1	1	0	1	1	1	1	Thioredoxin-like	domain
Trm56	PF01994.16	gi|564289750|ref|YP_008876009.1|	-	4.4e-47	158.9	0.0	6e-47	158.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
Sulfatase	PF00884.23	gi|564289751|ref|YP_008876010.1|	-	2.2e-35	122.6	0.1	3e-35	122.1	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564289751|ref|YP_008876010.1|	-	2.4e-11	43.8	0.1	4e-06	26.7	0.1	2.2	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|564289751|ref|YP_008876010.1|	-	2.3e-05	23.2	0.0	0.00074	18.3	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.12	gi|564289751|ref|YP_008876010.1|	-	0.001	18.3	0.1	0.0017	17.5	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
DHFR_1	PF00186.19	gi|564289752|ref|YP_008876011.1|	-	1.8e-32	112.3	0.0	7.1e-32	110.3	0.0	1.7	1	1	0	1	1	1	1	Dihydrofolate	reductase
zf-ribbon_3	PF13248.6	gi|564289753|ref|YP_008876012.1|	-	0.0016	17.8	1.5	0.0026	17.1	1.5	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564289753|ref|YP_008876012.1|	-	0.0056	16.8	1.0	0.013	15.7	0.9	1.7	2	0	0	2	2	2	1	Zinc	ribbon	domain
zf-H2C2_2	PF13465.6	gi|564289753|ref|YP_008876012.1|	-	0.035	14.5	2.1	0.083	13.4	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
DZR	PF12773.7	gi|564289753|ref|YP_008876012.1|	-	0.054	13.5	1.7	0.11	12.6	1.8	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
TFIIE_alpha	PF02002.17	gi|564289754|ref|YP_008876013.1|	-	2.3e-20	72.4	0.5	6.2e-20	71.0	0.0	1.8	2	0	0	2	2	2	1	TFIIE	alpha	subunit
Sigma70_r3	PF04539.16	gi|564289754|ref|YP_008876013.1|	-	0.0026	17.8	0.3	0.008	16.3	0.0	1.9	2	0	0	2	2	2	1	Sigma-70	region	3
Desulfoferrod_N	PF06397.12	gi|564289754|ref|YP_008876013.1|	-	0.0027	17.3	0.9	2	8.1	0.2	2.3	2	0	0	2	2	2	2	Desulfoferrodoxin,	N-terminal	domain
HypA	PF01155.19	gi|564289754|ref|YP_008876013.1|	-	0.0031	17.5	0.1	0.004	17.1	0.1	1.3	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|564289754|ref|YP_008876013.1|	-	0.0078	15.8	1.4	2.7	7.7	0.1	2.5	2	0	0	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
zf-ribbon_3	PF13248.6	gi|564289754|ref|YP_008876013.1|	-	0.017	14.5	1.5	0.47	9.9	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564289754|ref|YP_008876013.1|	-	0.031	14.4	5.1	0.1	12.7	5.0	1.9	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564289754|ref|YP_008876013.1|	-	0.054	13.5	0.4	0.093	12.7	0.4	1.3	1	0	0	1	1	1	0	zinc-ribbons
TackOD1	PF18551.1	gi|564289754|ref|YP_008876013.1|	-	0.057	13.1	0.7	0.11	12.2	0.5	1.5	1	1	1	2	2	2	0	Thaumarchaeal	output	domain	1
NRDD	PF13597.6	gi|564289754|ref|YP_008876013.1|	-	0.064	12.0	0.1	0.083	11.7	0.1	1.2	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
PhnA_Zn_Ribbon	PF08274.12	gi|564289754|ref|YP_008876013.1|	-	0.072	13.1	2.0	6.2	6.9	0.0	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.6	gi|564289754|ref|YP_008876013.1|	-	0.082	12.6	3.3	1.4	8.8	0.5	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.7	gi|564289754|ref|YP_008876013.1|	-	0.083	12.9	0.5	0.17	11.9	0.5	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-C2H2_4	PF13894.6	gi|564289754|ref|YP_008876013.1|	-	0.15	12.9	0.8	18	6.5	0.1	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
TF_Zn_Ribbon	PF08271.12	gi|564289754|ref|YP_008876013.1|	-	0.2	11.2	5.8	2.2	7.9	0.5	2.7	1	1	1	2	2	2	0	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.7	gi|564289754|ref|YP_008876013.1|	-	0.3	11.1	3.1	1.8	8.6	0.1	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.18	gi|564289754|ref|YP_008876013.1|	-	0.59	10.0	3.0	14	5.7	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-Mss51	PF13824.6	gi|564289754|ref|YP_008876013.1|	-	0.98	9.6	3.9	7.9	6.7	3.1	2.6	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF2110	PF09883.9	gi|564289755|ref|YP_008876014.1|	-	1.6e-89	299.3	0.0	1.9e-89	299.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
LPAM_1	PF08139.12	gi|564289756|ref|YP_008876015.1|	-	0.14	12.7	0.8	0.35	11.4	0.8	1.8	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
Nop	PF01798.18	gi|564289757|ref|YP_008876016.1|	-	7.2e-38	130.3	0.0	1e-37	129.8	0.0	1.3	1	1	0	1	1	1	1	snoRNA	binding	domain,	fibrillarin
Fibrillarin	PF01269.17	gi|564289758|ref|YP_008876017.1|	-	3.9e-59	199.5	0.0	4.6e-59	199.3	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
Histidinol_dh	PF00815.20	gi|564289758|ref|YP_008876017.1|	-	0.058	12.4	0.1	0.074	12.1	0.1	1.1	1	0	0	1	1	1	0	Histidinol	dehydrogenase
GCS2	PF04107.13	gi|564289759|ref|YP_008876018.1|	-	4.6e-76	255.9	0.0	5.5e-76	255.7	0.0	1.1	1	0	0	1	1	1	1	Glutamate-cysteine	ligase	family	2(GCS2)
Amidoligase_2	PF12224.8	gi|564289759|ref|YP_008876018.1|	-	0.098	12.3	0.0	6.3	6.4	0.0	2.1	2	0	0	2	2	2	0	Putative	amidoligase	enzyme
TrmB	PF01978.19	gi|564289760|ref|YP_008876019.1|	-	3.8e-08	33.1	0.1	6.3e-08	32.4	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.6	gi|564289760|ref|YP_008876019.1|	-	2.7e-07	30.1	0.0	3.9e-07	29.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|564289760|ref|YP_008876019.1|	-	1.8e-05	24.7	0.4	3.2e-05	23.9	0.4	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564289760|ref|YP_008876019.1|	-	8.6e-05	22.3	0.2	0.00014	21.6	0.2	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|564289760|ref|YP_008876019.1|	-	9.5e-05	22.0	0.2	0.00023	20.7	0.2	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|564289760|ref|YP_008876019.1|	-	0.00025	20.9	0.0	0.00043	20.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|564289760|ref|YP_008876019.1|	-	0.00083	19.2	0.2	0.0018	18.1	0.2	1.6	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.17	gi|564289760|ref|YP_008876019.1|	-	0.00093	19.0	0.0	0.0013	18.6	0.0	1.3	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_5	PF01022.20	gi|564289760|ref|YP_008876019.1|	-	0.0013	18.6	0.0	0.002	18.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|564289760|ref|YP_008876019.1|	-	0.0051	17.1	0.0	0.0081	16.5	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_9	PF08221.11	gi|564289760|ref|YP_008876019.1|	-	0.0096	16.0	0.0	0.015	15.3	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564289760|ref|YP_008876019.1|	-	0.026	14.5	0.1	0.042	13.8	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Replic_Relax	PF13814.6	gi|564289760|ref|YP_008876019.1|	-	0.038	14.0	0.0	0.059	13.4	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
HTH_27	PF13463.6	gi|564289760|ref|YP_008876019.1|	-	0.044	14.3	0.1	0.083	13.4	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|564289760|ref|YP_008876019.1|	-	0.046	13.6	0.1	0.11	12.4	0.0	1.7	2	0	0	2	2	1	0	AsnC-type	helix-turn-helix	domain
DUF3369	PF11849.8	gi|564289760|ref|YP_008876019.1|	-	0.058	13.6	0.0	0.086	13.0	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3369)
TetR_C_24	PF17932.1	gi|564289760|ref|YP_008876019.1|	-	0.059	13.6	0.4	0.086	13.1	0.4	1.2	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
CTP_transf_like	PF01467.26	gi|564289761|ref|YP_008876020.1|	-	4.4e-12	46.4	0.0	5.7e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|564289761|ref|YP_008876020.1|	-	0.0024	17.8	0.1	0.022	14.6	0.1	2.0	2	0	0	2	2	2	1	FAD	synthetase
TFIIB	PF00382.19	gi|564289762|ref|YP_008876021.1|	-	7e-07	29.2	0.3	1.2e-06	28.5	0.3	1.4	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
HTH_28	PF13518.6	gi|564289762|ref|YP_008876021.1|	-	0.00022	21.3	0.2	0.00037	20.6	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|564289762|ref|YP_008876021.1|	-	0.0043	16.4	0.2	0.0063	15.9	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_AsnC-type	PF13404.6	gi|564289762|ref|YP_008876021.1|	-	0.0044	16.8	0.4	0.0073	16.1	0.4	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.6	gi|564289762|ref|YP_008876021.1|	-	0.0072	16.1	0.1	0.013	15.2	0.1	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|564289762|ref|YP_008876021.1|	-	0.0085	15.6	0.1	0.014	14.9	0.1	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_29	PF13551.6	gi|564289762|ref|YP_008876021.1|	-	0.018	15.0	0.1	0.033	14.2	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_43	PF09904.9	gi|564289762|ref|YP_008876021.1|	-	0.03	14.2	0.0	0.043	13.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
KORA	PF16509.5	gi|564289762|ref|YP_008876021.1|	-	0.037	14.3	0.2	0.054	13.8	0.2	1.4	1	1	0	1	1	1	0	TrfB	plasmid	transcriptional	repressor
HTH_36	PF13730.6	gi|564289762|ref|YP_008876021.1|	-	0.064	13.2	0.0	0.09	12.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564289762|ref|YP_008876021.1|	-	0.086	12.7	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_19	PF12844.7	gi|564289764|ref|YP_008876023.1|	-	0.00012	22.0	0.1	0.0002	21.3	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.6	gi|564289764|ref|YP_008876023.1|	-	0.001	19.4	1.0	0.0015	18.9	0.2	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|564289764|ref|YP_008876023.1|	-	0.017	15.2	0.1	0.026	14.6	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix
Acyl-CoA_dh_1	PF00441.24	gi|564289765|ref|YP_008876024.1|	-	2.2e-57	193.5	4.0	3.6e-57	192.8	4.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|564289765|ref|YP_008876024.1|	-	1e-30	106.8	5.6	1e-30	106.8	5.6	1.6	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|564289765|ref|YP_008876024.1|	-	2.6e-28	99.0	0.5	9e-28	97.2	0.0	2.1	2	1	0	3	3	3	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564289765|ref|YP_008876024.1|	-	2.4e-27	95.0	0.0	4.9e-27	94.0	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
HpaB_N	PF11794.8	gi|564289765|ref|YP_008876024.1|	-	0.077	12.7	0.0	0.3	10.7	0.0	1.8	2	0	0	2	2	2	0	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HAD_2	PF13419.6	gi|564289766|ref|YP_008876025.1|	-	1e-16	61.5	0.0	2.4e-15	57.1	0.0	2.0	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564289766|ref|YP_008876025.1|	-	6.1e-11	43.0	3.4	6.8e-09	36.3	0.2	2.1	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564289766|ref|YP_008876025.1|	-	3.5e-07	30.2	0.2	9.2e-07	28.8	0.1	1.7	2	0	0	2	2	2	1	HAD-hyrolase-like
HAD	PF12710.7	gi|564289766|ref|YP_008876025.1|	-	0.00013	22.5	2.1	0.00083	19.8	2.1	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Pantoate_transf	PF02548.15	gi|564289768|ref|YP_008876027.1|	-	5.3e-100	334.1	0.3	6.5e-100	333.8	0.3	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.6	gi|564289768|ref|YP_008876027.1|	-	4.2e-07	29.7	3.1	1.3e-06	28.1	0.9	2.1	1	1	0	2	2	2	1	Phosphoenolpyruvate	phosphomutase
KORA	PF16509.5	gi|564289768|ref|YP_008876027.1|	-	0.099	12.9	0.0	1.2	9.5	0.0	2.3	2	0	0	2	2	2	0	TrfB	plasmid	transcriptional	repressor
COX2	PF00116.20	gi|564289769|ref|YP_008876028.1|	-	1e-15	57.6	1.0	8.7e-15	54.7	0.0	2.1	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX2_TM	PF02790.15	gi|564289769|ref|YP_008876028.1|	-	4.1e-09	36.4	0.1	6.8e-09	35.7	0.1	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	transmembrane	domain
Cupredoxin_1	PF13473.6	gi|564289769|ref|YP_008876028.1|	-	8.3e-06	25.9	0.0	1.6e-05	25.0	0.0	1.5	1	0	0	1	1	1	1	Cupredoxin-like	domain
COX1	PF00115.20	gi|564289770|ref|YP_008876029.1|	-	4.6e-135	450.8	57.7	4.6e-135	450.8	57.7	2.3	2	1	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF4383	PF14325.6	gi|564289771|ref|YP_008876030.1|	-	0.024	14.9	0.8	0.13	12.5	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4383)
COX3	PF00510.18	gi|564289772|ref|YP_008876031.1|	-	2.5e-36	125.8	7.2	3.9e-36	125.2	7.2	1.3	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
DUF420	PF04238.12	gi|564289772|ref|YP_008876031.1|	-	0.34	11.2	9.7	0.085	13.1	6.3	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF420)
Radical_SAM	PF04055.21	gi|564289773|ref|YP_008876032.1|	-	5e-16	59.5	1.6	5.5e-14	52.9	0.1	2.3	2	0	0	2	2	2	2	Radical	SAM	superfamily
BATS	PF06968.13	gi|564289773|ref|YP_008876032.1|	-	2.1e-15	56.6	0.0	3.9e-15	55.8	0.0	1.5	1	0	0	1	1	1	1	Biotin	and	Thiamin	Synthesis	associated	domain
Pterin_bind	PF00809.22	gi|564289773|ref|YP_008876032.1|	-	0.0093	15.7	0.2	0.032	13.9	0.2	2.2	1	1	1	2	2	2	1	Pterin	binding	enzyme
GCH_III	PF05165.12	gi|564289773|ref|YP_008876032.1|	-	0.041	13.1	0.0	0.98	8.6	0.0	2.2	2	0	0	2	2	2	0	GTP	cyclohydrolase	III
ELFV_dehydrog	PF00208.21	gi|564289774|ref|YP_008876033.1|	-	0.0014	18.4	0.0	0.0028	17.4	0.0	1.5	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|564289774|ref|YP_008876033.1|	-	0.018	15.8	1.7	1	10.2	0.1	2.8	3	0	0	3	3	3	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Aminotran_1_2	PF00155.21	gi|564289775|ref|YP_008876034.1|	-	1.3e-57	195.6	0.0	1.5e-57	195.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.20	gi|564289775|ref|YP_008876034.1|	-	0.0012	17.4	0.0	0.002	16.7	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|564289775|ref|YP_008876034.1|	-	0.085	12.2	0.8	0.29	10.4	0.8	1.7	1	1	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
AAA_26	PF13500.6	gi|564289776|ref|YP_008876035.1|	-	1.3e-35	123.1	0.0	1.6e-35	122.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564289776|ref|YP_008876035.1|	-	3.3e-08	33.7	0.0	6.8e-08	32.6	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF1611	PF07755.11	gi|564289776|ref|YP_008876035.1|	-	5.7e-05	22.5	0.9	0.00022	20.6	0.2	2.1	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
AAA_26	PF13500.6	gi|564289777|ref|YP_008876036.1|	-	1.7e-33	116.1	0.0	1.1e-32	113.5	0.0	2.3	2	1	2	4	4	4	1	AAA	domain
DRTGG	PF07085.12	gi|564289777|ref|YP_008876036.1|	-	1.1e-30	105.5	0.4	4.4e-30	103.6	0.1	2.0	2	0	0	2	2	2	1	DRTGG	domain
CbiA	PF01656.23	gi|564289777|ref|YP_008876036.1|	-	0.0012	18.9	0.0	0.0018	18.3	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Hpr_kinase_N	PF02603.16	gi|564289777|ref|YP_008876036.1|	-	0.0015	18.6	0.0	0.0033	17.4	0.0	1.6	2	0	0	2	2	2	1	HPr	Serine	kinase	N	terminus
PucR	PF07905.11	gi|564289777|ref|YP_008876036.1|	-	0.0072	16.6	0.2	0.44	10.8	0.0	2.6	1	1	1	2	2	2	1	Purine	catabolism	regulatory	protein-like	family
IstB_IS21	PF01695.17	gi|564289777|ref|YP_008876036.1|	-	0.084	12.6	0.0	0.2	11.4	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
MobB	PF03205.14	gi|564289777|ref|YP_008876036.1|	-	0.16	11.9	0.1	20	5.1	0.0	2.6	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ATP-grasp_5	PF13549.6	gi|564289778|ref|YP_008876037.1|	-	1.6e-72	243.6	0.3	2.6e-72	242.9	0.3	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Succ_CoA_lig	PF13607.6	gi|564289778|ref|YP_008876037.1|	-	1.2e-51	174.2	0.2	3e-51	172.8	0.2	1.8	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.6	gi|564289778|ref|YP_008876037.1|	-	8.2e-23	81.1	1.5	1.6e-22	80.2	0.2	2.2	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|564289778|ref|YP_008876037.1|	-	2.2e-13	50.7	1.8	6.8e-13	49.1	1.8	1.9	1	0	0	1	1	1	1	CoA	binding	domain
ATP-grasp_2	PF08442.10	gi|564289778|ref|YP_008876037.1|	-	0.00015	21.4	0.0	0.00039	20.0	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	domain
GFO_IDH_MocA	PF01408.22	gi|564289778|ref|YP_008876037.1|	-	0.0045	17.8	1.1	0.049	14.5	0.1	2.6	2	1	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DUF4089	PF13318.6	gi|564289778|ref|YP_008876037.1|	-	0.046	14.2	0.3	3.5	8.2	0.0	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4089)
Zincin_1	PF06262.11	gi|564289779|ref|YP_008876038.1|	-	0.0068	16.5	0.1	0.011	15.8	0.1	1.5	1	1	0	1	1	1	1	Zincin-like	metallopeptidase
Ferritin	PF00210.24	gi|564289780|ref|YP_008876039.1|	-	3.7e-33	114.4	4.7	4.5e-33	114.2	4.7	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
DUF2383	PF09537.10	gi|564289780|ref|YP_008876039.1|	-	0.00079	19.8	1.4	0.02	15.2	0.1	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF2383)
YafQ_toxin	PF15738.5	gi|564289780|ref|YP_008876039.1|	-	0.3	11.4	4.9	1.1	9.6	0.5	2.4	2	1	0	2	2	2	0	Bacterial	toxin	of	type	II	toxin-antitoxin	system,	YafQ
Syntaxin-6_N	PF09177.11	gi|564289782|ref|YP_008876041.1|	-	0.0069	16.9	4.6	3	8.5	0.1	3.6	2	1	1	3	3	3	2	Syntaxin	6,	N-terminal
CorA	PF01544.18	gi|564289782|ref|YP_008876041.1|	-	0.014	14.7	0.5	0.014	14.7	0.5	1.6	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Com_YlbF	PF06133.11	gi|564289782|ref|YP_008876041.1|	-	0.02	15.5	0.1	0.067	13.8	0.0	1.8	2	0	0	2	2	2	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
TPR_14	PF13428.6	gi|564289782|ref|YP_008876041.1|	-	0.05	14.4	0.9	2.7	9.0	0.3	2.6	2	1	0	2	2	2	0	Tetratricopeptide	repeat
TPR_9	PF13371.6	gi|564289782|ref|YP_008876041.1|	-	0.079	13.1	1.4	0.21	11.8	1.4	1.7	1	1	0	1	1	1	0	Tetratricopeptide	repeat
DUF4164	PF13747.6	gi|564289782|ref|YP_008876041.1|	-	0.091	13.1	4.9	0.85	9.9	2.5	2.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
TPR_11	PF13414.6	gi|564289782|ref|YP_008876041.1|	-	0.097	12.4	0.2	0.21	11.3	0.0	1.5	2	0	0	2	2	2	0	TPR	repeat
MDMPI_N	PF11716.8	gi|564289782|ref|YP_008876041.1|	-	0.14	12.8	3.8	0.13	13.0	2.3	1.7	2	0	0	2	2	2	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|564289784|ref|YP_008876044.1|	-	0.0001	22.2	2.0	0.00025	21.0	2.0	1.6	1	1	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|564289784|ref|YP_008876044.1|	-	0.0044	16.9	0.6	0.0075	16.1	0.6	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Thiolase_N	PF00108.23	gi|564289785|ref|YP_008876045.1|	-	1e-58	198.8	0.0	1.4e-58	198.3	0.0	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564289785|ref|YP_008876045.1|	-	1.1e-08	34.7	0.3	3.2e-08	33.2	0.3	1.7	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Ketoacyl-synt_C	PF02801.22	gi|564289785|ref|YP_008876045.1|	-	0.0021	18.1	0.2	5.8	7.0	0.0	3.6	3	0	0	3	3	3	1	Beta-ketoacyl	synthase,	C-terminal	domain
ketoacyl-synt	PF00109.26	gi|564289785|ref|YP_008876045.1|	-	0.012	15.2	2.0	0.28	10.7	0.2	2.8	2	1	1	3	3	3	0	Beta-ketoacyl	synthase,	N-terminal	domain
UpxZ	PF06603.11	gi|564289786|ref|YP_008876046.1|	-	0.036	14.3	0.0	0.058	13.7	0.0	1.2	1	0	0	1	1	1	0	UpxZ	family	of	transcription	anti-terminator	antagonists
Peripla_BP_2	PF01497.18	gi|564289787|ref|YP_008876047.1|	-	4.8e-19	68.9	0.2	9.7e-19	67.9	0.0	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
TF_Zn_Ribbon	PF08271.12	gi|564289788|ref|YP_008876048.1|	-	0.0021	17.6	0.2	0.0036	16.8	0.2	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
TackOD1	PF18551.1	gi|564289788|ref|YP_008876048.1|	-	0.01	15.5	0.1	0.011	15.4	0.1	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zinc_ribbon_4	PF13717.6	gi|564289788|ref|YP_008876048.1|	-	0.02	14.8	0.1	6	6.9	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|564289788|ref|YP_008876048.1|	-	0.022	15.1	0.1	0.027	14.9	0.1	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
TusA	PF01206.17	gi|564289788|ref|YP_008876048.1|	-	0.032	14.0	0.1	0.04	13.7	0.1	1.1	1	0	0	1	1	1	0	Sulfurtransferase	TusA
Rubredoxin_2	PF18073.1	gi|564289788|ref|YP_008876048.1|	-	0.074	12.8	2.7	1.4	8.8	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
ADK_lid	PF05191.14	gi|564289788|ref|YP_008876048.1|	-	0.088	12.8	0.6	0.14	12.2	0.6	1.3	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
HypA	PF01155.19	gi|564289788|ref|YP_008876048.1|	-	0.089	12.8	0.2	0.1	12.6	0.2	1.2	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Stc1	PF12898.7	gi|564289788|ref|YP_008876048.1|	-	0.1	13.1	1.0	0.23	12.1	1.0	1.6	1	1	0	1	1	1	0	Stc1	domain
zf-Mss51	PF13824.6	gi|564289788|ref|YP_008876048.1|	-	0.11	12.6	1.0	0.78	9.9	1.6	1.9	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Elf1	PF05129.13	gi|564289788|ref|YP_008876048.1|	-	0.13	12.3	0.7	0.81	9.8	0.0	2.0	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
PhnA_Zn_Ribbon	PF08274.12	gi|564289788|ref|YP_008876048.1|	-	0.25	11.3	3.5	1.2	9.1	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-H2C2_2	PF13465.6	gi|564289788|ref|YP_008876048.1|	-	0.34	11.4	1.0	31	5.2	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
Zn-ribbon_8	PF09723.10	gi|564289788|ref|YP_008876048.1|	-	0.92	9.7	4.7	8.2	6.6	0.6	2.4	1	1	2	3	3	3	0	Zinc	ribbon	domain
OAD_gamma	PF04277.13	gi|564289789|ref|YP_008876049.1|	-	0.22	12.2	2.1	0.4	11.3	2.1	1.5	1	0	0	1	1	1	0	Oxaloacetate	decarboxylase,	gamma	chain
Carboxyl_trans	PF01039.22	gi|564289790|ref|YP_008876050.1|	-	4.5e-196	652.3	0.0	5.1e-196	652.1	0.0	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.11	gi|564289790|ref|YP_008876050.1|	-	0.0024	17.4	0.0	0.007	15.9	0.0	1.7	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
adh_short_C2	PF13561.6	gi|564289791|ref|YP_008876051.1|	-	6.5e-63	212.4	1.2	7.8e-63	212.2	1.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564289791|ref|YP_008876051.1|	-	7.9e-58	195.1	0.8	9.4e-58	194.9	0.8	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564289791|ref|YP_008876051.1|	-	4.6e-20	72.3	0.2	6.3e-20	71.8	0.2	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564289791|ref|YP_008876051.1|	-	0.009	15.5	0.2	0.013	15.0	0.2	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RGP	PF03214.13	gi|564289792|ref|YP_008876052.1|	-	2.8e-17	62.9	0.0	3.3e-17	62.7	0.0	1.1	1	0	0	1	1	1	1	Reversibly	glycosylated	polypeptide
SBP_bac_8	PF13416.6	gi|564289793|ref|YP_008876053.1|	-	3.5e-14	53.3	0.1	4.9e-14	52.8	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|564289793|ref|YP_008876053.1|	-	1.4e-13	50.8	0.0	1.9e-13	50.4	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564289793|ref|YP_008876053.1|	-	9.2e-06	25.8	0.0	4.2e-05	23.7	0.0	1.9	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|564289793|ref|YP_008876053.1|	-	5.2e-05	23.1	0.8	0.00012	22.0	0.8	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564289793|ref|YP_008876053.1|	-	0.006	16.4	5.0	0.006	16.4	5.0	2.4	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|564289794|ref|YP_008876054.1|	-	1.5e-24	86.7	33.7	1.4e-14	54.3	13.2	3.7	2	2	2	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|564289795|ref|YP_008876055.1|	-	3.7e-35	121.4	0.0	6.6e-35	120.6	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|564289795|ref|YP_008876055.1|	-	2.9e-09	37.0	0.5	9.2e-09	35.4	0.1	2.1	2	0	0	2	2	2	1	TOBE	domain
AAA_21	PF13304.6	gi|564289795|ref|YP_008876055.1|	-	2e-06	27.8	0.0	0.0079	16.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Rad17	PF03215.15	gi|564289795|ref|YP_008876055.1|	-	0.00044	20.2	0.0	0.00069	19.6	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA	PF00004.29	gi|564289795|ref|YP_008876055.1|	-	0.0032	17.9	0.1	0.033	14.6	0.1	2.3	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|564289795|ref|YP_008876055.1|	-	0.0043	17.5	0.3	0.011	16.1	0.2	1.8	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289795|ref|YP_008876055.1|	-	0.0053	17.0	0.9	0.028	14.7	0.9	2.0	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289795|ref|YP_008876055.1|	-	0.024	14.5	0.0	0.057	13.3	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA_28	PF13521.6	gi|564289795|ref|YP_008876055.1|	-	0.03	14.6	0.0	0.27	11.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|564289795|ref|YP_008876055.1|	-	0.033	14.4	0.3	0.44	10.8	0.3	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
G-alpha	PF00503.20	gi|564289795|ref|YP_008876055.1|	-	0.046	12.9	0.0	0.058	12.5	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_33	PF13671.6	gi|564289795|ref|YP_008876055.1|	-	0.13	12.4	1.0	2.3	8.4	1.0	2.6	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|564289795|ref|YP_008876055.1|	-	0.15	11.4	0.1	1.2	8.5	0.0	2.0	1	1	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
PMT_2	PF13231.6	gi|564289796|ref|YP_008876056.1|	-	7.8e-07	29.4	9.4	7.8e-07	29.4	9.4	1.9	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|564289796|ref|YP_008876056.1|	-	0.72	9.4	9.2	0.19	11.3	4.9	2.0	2	0	0	2	2	2	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Gluconate_2-dh3	PF13618.6	gi|564289797|ref|YP_008876057.1|	-	2.8e-09	37.3	0.0	3.9e-09	36.8	0.0	1.2	1	0	0	1	1	1	1	Gluconate	2-dehydrogenase	subunit	3
HisKA_4TM	PF16926.5	gi|564289797|ref|YP_008876057.1|	-	0.01	15.4	0.2	0.019	14.6	0.2	1.4	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
Glycos_transf_2	PF00535.26	gi|564289798|ref|YP_008876058.1|	-	1.7e-21	76.7	0.0	2.2e-21	76.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289798|ref|YP_008876058.1|	-	4e-05	23.6	0.6	6e-05	23.0	0.6	1.3	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
DUF1724	PF08350.10	gi|564289799|ref|YP_008876059.1|	-	8.8e-12	45.0	0.0	1.5e-11	44.3	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1724)
TrmB	PF01978.19	gi|564289799|ref|YP_008876059.1|	-	0.0022	17.8	0.0	0.0045	16.8	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|564289799|ref|YP_008876059.1|	-	0.018	14.9	0.0	0.028	14.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.14	gi|564289799|ref|YP_008876059.1|	-	0.024	14.6	0.0	0.044	13.7	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Ribosomal_S19e	PF01090.19	gi|564289799|ref|YP_008876059.1|	-	0.037	13.7	0.0	0.066	12.9	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S19e
DUF505	PF04458.12	gi|564289799|ref|YP_008876059.1|	-	0.065	11.6	0.0	0.089	11.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
HTH_20	PF12840.7	gi|564289799|ref|YP_008876059.1|	-	0.14	12.2	0.0	1	9.5	0.0	2.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
HemN_C	PF06969.16	gi|564289799|ref|YP_008876059.1|	-	0.15	12.2	0.0	0.3	11.2	0.0	1.5	1	0	0	1	1	1	0	HemN	C-terminal	domain
Regulator_TrmB	PF11495.8	gi|564289800|ref|YP_008876060.1|	-	7.8e-69	231.4	0.2	1.1e-68	230.9	0.2	1.2	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|564289800|ref|YP_008876060.1|	-	1.6e-20	72.7	0.0	3.3e-20	71.7	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564289800|ref|YP_008876060.1|	-	4.9e-05	23.3	0.0	0.00011	22.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564289800|ref|YP_008876060.1|	-	0.0003	20.6	0.0	0.00065	19.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564289800|ref|YP_008876060.1|	-	0.00031	20.5	0.1	0.002	17.9	0.0	2.3	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|564289800|ref|YP_008876060.1|	-	0.00049	19.8	0.0	0.0013	18.5	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|564289800|ref|YP_008876060.1|	-	0.012	16.0	0.0	0.028	14.8	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
DUF2250	PF10007.9	gi|564289800|ref|YP_008876060.1|	-	0.016	15.3	0.0	0.029	14.5	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_24	PF13412.6	gi|564289800|ref|YP_008876060.1|	-	0.062	12.9	0.0	0.24	11.0	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.17	gi|564289800|ref|YP_008876060.1|	-	0.063	13.1	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_9	PF08221.11	gi|564289800|ref|YP_008876060.1|	-	0.085	13.0	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
SBP_bac_8	PF13416.6	gi|564289801|ref|YP_008876061.1|	-	8.4e-24	84.9	7.8	1.3e-23	84.3	7.8	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564289801|ref|YP_008876061.1|	-	6.3e-16	59.2	7.6	8.9e-16	58.7	7.6	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564289801|ref|YP_008876061.1|	-	0.18	11.7	7.6	0.39	10.6	7.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glu_dehyd_C	PF16912.5	gi|564289802|ref|YP_008876062.1|	-	1e-97	325.8	0.0	1.3e-97	325.4	0.0	1.1	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N	PF08240.12	gi|564289802|ref|YP_008876062.1|	-	3.3e-10	39.8	0.0	5e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_N_2	PF16884.5	gi|564289802|ref|YP_008876062.1|	-	0.00041	20.2	0.1	0.0011	18.8	0.1	1.7	2	0	0	2	2	2	1	N-terminal	domain	of	oxidoreductase
ADH_zinc_N	PF00107.26	gi|564289802|ref|YP_008876062.1|	-	0.052	13.5	0.0	0.095	12.7	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
GFO_IDH_MocA	PF01408.22	gi|564289803|ref|YP_008876063.1|	-	5.7e-26	91.7	0.5	1.1e-25	90.8	0.2	1.6	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|564289803|ref|YP_008876063.1|	-	2.7e-07	30.6	0.1	7.1e-07	29.2	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
F420_oxidored	PF03807.17	gi|564289803|ref|YP_008876063.1|	-	0.00012	22.6	0.1	0.00026	21.5	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_3	PF03447.16	gi|564289803|ref|YP_008876063.1|	-	0.0025	18.4	0.5	0.0044	17.7	0.5	1.3	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|564289803|ref|YP_008876063.1|	-	0.006	16.2	0.1	0.0094	15.5	0.1	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
CoA_binding	PF02629.19	gi|564289803|ref|YP_008876063.1|	-	0.011	16.4	0.2	0.02	15.6	0.2	1.4	1	0	0	1	1	1	0	CoA	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564289803|ref|YP_008876063.1|	-	0.038	13.4	0.1	0.12	11.7	0.0	1.8	1	1	1	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.15	gi|564289803|ref|YP_008876063.1|	-	0.045	13.9	0.0	0.085	13.0	0.0	1.6	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|564289803|ref|YP_008876063.1|	-	0.08	13.4	0.0	0.17	12.3	0.0	1.6	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
G6PD_N	PF00479.22	gi|564289803|ref|YP_008876063.1|	-	0.091	13.4	0.0	0.75	10.4	0.0	2.0	2	0	0	2	2	2	0	Glucose-6-phosphate	dehydrogenase,	NAD	binding	domain
HemY_N	PF07219.13	gi|564289804|ref|YP_008876064.1|	-	0.041	14.1	0.0	0.047	13.9	0.0	1.1	1	0	0	1	1	1	0	HemY	protein	N-terminus
LMBR1	PF04791.16	gi|564289804|ref|YP_008876064.1|	-	0.12	11.3	0.0	0.12	11.2	0.0	1.0	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
stn_TNFRSF12A	PF12191.8	gi|564289804|ref|YP_008876064.1|	-	0.2	11.9	0.0	0.21	11.8	0.0	1.2	1	0	0	1	1	1	0	Tumour	necrosis	factor	receptor	stn_TNFRSF12A_TNFR	domain
ABC_tran	PF00005.27	gi|564289805|ref|YP_008876065.1|	-	3.6e-33	115.0	0.0	6.1e-33	114.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|564289805|ref|YP_008876065.1|	-	1e-12	48.6	0.1	2.8e-12	47.3	0.1	1.8	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|564289805|ref|YP_008876065.1|	-	3e-06	27.3	0.0	0.038	13.8	0.0	2.2	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564289805|ref|YP_008876065.1|	-	3.6e-05	23.3	0.3	0.025	14.0	0.1	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564289805|ref|YP_008876065.1|	-	0.0003	20.6	0.1	0.15	11.8	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
TOBE_2	PF08402.10	gi|564289805|ref|YP_008876065.1|	-	0.00091	19.3	0.0	0.0068	16.6	0.0	2.5	2	1	0	2	2	2	1	TOBE	domain
CysA_C_terminal	PF17850.1	gi|564289805|ref|YP_008876065.1|	-	0.001	19.6	0.0	0.0032	18.0	0.0	1.9	2	0	0	2	2	1	1	CysA	C-terminal	regulatory	domain
AAA_29	PF13555.6	gi|564289805|ref|YP_008876065.1|	-	0.0028	17.4	0.1	0.0075	16.0	0.0	1.7	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
Rad17	PF03215.15	gi|564289805|ref|YP_008876065.1|	-	0.0042	17.0	0.0	0.0063	16.5	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
RNA_helicase	PF00910.22	gi|564289805|ref|YP_008876065.1|	-	0.012	16.0	0.0	0.033	14.6	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
AAA	PF00004.29	gi|564289805|ref|YP_008876065.1|	-	0.014	15.8	0.3	0.22	12.0	0.0	2.3	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|564289805|ref|YP_008876065.1|	-	0.017	15.4	0.3	0.041	14.2	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|564289805|ref|YP_008876065.1|	-	0.018	15.0	0.0	0.047	13.7	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
RsgA_GTPase	PF03193.16	gi|564289805|ref|YP_008876065.1|	-	0.025	14.5	0.0	0.056	13.3	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|564289805|ref|YP_008876065.1|	-	0.041	14.4	0.1	0.082	13.4	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|564289805|ref|YP_008876065.1|	-	0.059	13.6	0.2	0.15	12.3	0.2	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|564289805|ref|YP_008876065.1|	-	0.071	13.5	0.1	0.17	12.3	0.1	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|564289805|ref|YP_008876065.1|	-	0.11	13.0	0.7	1.3	9.6	0.3	2.7	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|564289805|ref|YP_008876065.1|	-	0.15	12.2	0.1	0.45	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|564289805|ref|YP_008876065.1|	-	0.17	11.4	0.0	0.29	10.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_24	PF13479.6	gi|564289805|ref|YP_008876065.1|	-	0.23	11.2	0.3	1.3	8.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.22	gi|564289806|ref|YP_008876066.1|	-	1.2e-10	41.4	22.9	1.2e-10	41.4	22.9	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564289807|ref|YP_008876067.1|	-	9.1e-14	51.6	20.1	9.1e-14	51.6	20.1	2.7	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|564289808|ref|YP_008876068.1|	-	3.8e-14	53.4	1.3	1.1e-13	51.8	1.3	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564289808|ref|YP_008876068.1|	-	0.005	16.6	6.8	0.005	16.6	6.8	2.2	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Regulator_TrmB	PF11495.8	gi|564289809|ref|YP_008876069.1|	-	2.4e-78	262.6	0.4	2.9e-78	262.3	0.4	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|564289809|ref|YP_008876069.1|	-	5.6e-15	55.0	0.0	1.2e-14	53.9	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564289809|ref|YP_008876069.1|	-	0.0015	18.4	0.0	0.0037	17.1	0.0	1.7	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.14	gi|564289809|ref|YP_008876069.1|	-	0.0073	16.2	0.0	0.018	15.0	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.6	gi|564289809|ref|YP_008876069.1|	-	0.11	13.0	0.0	0.38	11.3	0.0	1.9	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|564289809|ref|YP_008876069.1|	-	0.12	12.7	0.0	0.32	11.4	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
Aldo_ket_red	PF00248.21	gi|564289810|ref|YP_008876070.1|	-	1.9e-79	267.0	0.0	2.3e-79	266.6	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
zf-RRN7	PF11781.8	gi|564289811|ref|YP_008876071.1|	-	0.053	13.2	0.7	2.6	7.8	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
FdhE	PF04216.12	gi|564289811|ref|YP_008876071.1|	-	0.056	13.3	0.1	0.084	12.7	0.1	1.3	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
zinc-ribbons_6	PF07191.12	gi|564289811|ref|YP_008876071.1|	-	0.083	12.9	2.1	0.16	12.0	2.1	1.4	1	0	0	1	1	1	0	zinc-ribbons
TackOD1	PF18551.1	gi|564289811|ref|YP_008876071.1|	-	0.086	12.5	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
DUF3039	PF11238.8	gi|564289811|ref|YP_008876071.1|	-	0.12	12.2	2.6	0.17	11.7	1.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3039)
TerY_C	PF15616.6	gi|564289811|ref|YP_008876071.1|	-	0.13	12.4	0.8	0.21	11.7	0.8	1.3	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|564289811|ref|YP_008876071.1|	-	0.15	12.2	3.9	12	6.1	1.7	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
Rad50_zn_hook	PF04423.14	gi|564289811|ref|YP_008876071.1|	-	0.2	11.5	1.8	2.6	8.0	0.1	2.5	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
zf-TFIIB	PF13453.6	gi|564289811|ref|YP_008876071.1|	-	0.25	10.7	3.7	7.6	6.0	1.0	2.5	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
DUF4536	PF15055.6	gi|564289811|ref|YP_008876071.1|	-	0.27	11.5	2.6	0.56	10.5	2.6	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4536)
zf-ribbon_3	PF13248.6	gi|564289811|ref|YP_008876071.1|	-	2.7	7.5	11.4	0.067	12.6	1.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|564289811|ref|YP_008876071.1|	-	4.1	7.5	8.2	0.32	11.1	0.8	2.6	3	0	0	3	3	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Pribosyltran	PF00156.27	gi|564289812|ref|YP_008876072.1|	-	2.6e-15	56.3	0.0	4.5e-15	55.5	0.0	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_23	PF13384.6	gi|564289812|ref|YP_008876072.1|	-	0.0018	18.0	0.0	0.0033	17.2	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
PRTase_2	PF15609.6	gi|564289812|ref|YP_008876072.1|	-	0.0069	15.9	0.3	0.029	13.8	0.3	1.9	1	1	0	1	1	1	1	Phosphoribosyl	transferase
HTH_7	PF02796.15	gi|564289812|ref|YP_008876072.1|	-	0.019	15.0	0.0	0.039	14.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_11	PF08279.12	gi|564289812|ref|YP_008876072.1|	-	0.035	14.0	0.1	0.1	12.6	0.1	1.8	1	0	0	1	1	1	0	HTH	domain
Sigma70_r4	PF04545.16	gi|564289812|ref|YP_008876072.1|	-	0.048	13.2	0.0	0.083	12.4	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_38	PF13936.6	gi|564289812|ref|YP_008876072.1|	-	0.071	12.9	0.3	0.53	10.1	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564289812|ref|YP_008876072.1|	-	0.076	12.6	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
UPRTase	PF14681.6	gi|564289812|ref|YP_008876072.1|	-	0.13	11.7	0.0	0.18	11.3	0.0	1.2	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
HTH_Crp_2	PF13545.6	gi|564289812|ref|YP_008876072.1|	-	0.16	12.0	0.0	0.42	10.6	0.0	1.7	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
Thiolase_N	PF00108.23	gi|564289814|ref|YP_008876074.1|	-	1.4e-29	103.3	1.5	2.1e-29	102.7	1.5	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.26	gi|564289814|ref|YP_008876074.1|	-	2e-12	47.3	6.1	1.8e-10	40.8	4.0	3.0	2	1	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Thiolase_C	PF02803.18	gi|564289814|ref|YP_008876074.1|	-	3.9e-08	33.0	0.1	1.1e-07	31.5	0.1	1.8	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.10	gi|564289814|ref|YP_008876074.1|	-	0.00085	19.1	3.1	0.029	14.2	0.7	2.5	2	0	0	2	2	2	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Ketoacyl-synt_C	PF02801.22	gi|564289814|ref|YP_008876074.1|	-	0.0044	17.0	2.1	0.5	10.4	0.0	3.6	3	1	0	4	4	4	1	Beta-ketoacyl	synthase,	C-terminal	domain
OB_aCoA_assoc	PF01796.17	gi|564289815|ref|YP_008876075.1|	-	8.5e-10	38.5	2.0	1.3e-09	37.9	2.0	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain,	acyl-CoA-associated
DUF35_N	PF12172.8	gi|564289815|ref|YP_008876075.1|	-	0.0094	15.8	2.2	0.015	15.2	2.2	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Abhydrolase_6	PF12697.7	gi|564289816|ref|YP_008876076.1|	-	7.7e-20	72.4	6.7	1.1e-19	72.0	6.7	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|564289816|ref|YP_008876076.1|	-	1e-12	48.2	0.1	2.2e-12	47.2	0.1	1.5	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564289816|ref|YP_008876076.1|	-	2.6e-07	30.2	0.0	3.9e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
MeaB	PF03308.16	gi|564289817|ref|YP_008876077.1|	-	1.1e-90	303.3	2.1	1.3e-90	303.0	2.1	1.1	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
cobW	PF02492.19	gi|564289817|ref|YP_008876077.1|	-	1.3e-06	28.1	1.3	2e-05	24.3	1.3	2.4	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.22	gi|564289817|ref|YP_008876077.1|	-	3.8e-05	23.4	0.6	0.00011	21.9	0.6	1.7	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
ATP_bind_1	PF03029.17	gi|564289817|ref|YP_008876077.1|	-	4.4e-05	23.4	0.1	0.00017	21.5	0.1	1.9	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
NTPase_1	PF03266.15	gi|564289817|ref|YP_008876077.1|	-	4.6e-05	23.4	0.3	0.00016	21.6	0.1	2.0	2	0	0	2	2	2	1	NTPase
AAA_30	PF13604.6	gi|564289817|ref|YP_008876077.1|	-	9.4e-05	22.2	0.1	0.00023	20.9	0.1	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564289817|ref|YP_008876077.1|	-	0.00032	21.0	0.2	0.0045	17.3	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
GTP_EFTU	PF00009.27	gi|564289817|ref|YP_008876077.1|	-	0.0011	18.5	0.0	0.73	9.3	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AAA_16	PF13191.6	gi|564289817|ref|YP_008876077.1|	-	0.0014	19.0	5.6	0.072	13.5	5.6	2.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564289817|ref|YP_008876077.1|	-	0.0027	17.4	0.2	0.0072	16.0	0.2	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Zeta_toxin	PF06414.12	gi|564289817|ref|YP_008876077.1|	-	0.003	16.9	0.1	0.0055	16.0	0.1	1.3	1	0	0	1	1	1	1	Zeta	toxin
ABC_tran	PF00005.27	gi|564289817|ref|YP_008876077.1|	-	0.0049	17.4	0.0	0.0088	16.6	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
NB-ARC	PF00931.22	gi|564289817|ref|YP_008876077.1|	-	0.012	14.9	0.0	0.019	14.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.6	gi|564289817|ref|YP_008876077.1|	-	0.013	16.0	0.3	0.17	12.4	0.1	2.4	2	0	0	2	2	2	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564289817|ref|YP_008876077.1|	-	0.018	15.0	0.0	0.19	11.6	0.0	2.3	3	0	0	3	3	2	0	RsgA	GTPase
MobB	PF03205.14	gi|564289817|ref|YP_008876077.1|	-	0.026	14.4	0.0	0.091	12.7	0.0	1.9	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
KAP_NTPase	PF07693.14	gi|564289817|ref|YP_008876077.1|	-	0.028	13.7	0.0	0.048	12.9	0.0	1.4	1	0	0	1	1	1	0	KAP	family	P-loop	domain
AAA_19	PF13245.6	gi|564289817|ref|YP_008876077.1|	-	0.03	14.6	0.5	0.12	12.7	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
CbiA	PF01656.23	gi|564289817|ref|YP_008876077.1|	-	0.043	13.9	0.0	0.11	12.6	0.0	1.7	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NACHT	PF05729.12	gi|564289817|ref|YP_008876077.1|	-	0.05	13.5	0.2	0.22	11.5	0.1	2.1	2	0	0	2	2	2	0	NACHT	domain
B12-binding_2	PF02607.17	gi|564289817|ref|YP_008876077.1|	-	0.05	14.0	0.2	0.22	12.0	0.1	2.2	2	1	0	2	2	1	0	B12	binding	domain
AAA_17	PF13207.6	gi|564289817|ref|YP_008876077.1|	-	0.07	13.6	0.4	0.31	11.4	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|564289817|ref|YP_008876077.1|	-	0.074	12.8	0.2	0.15	11.8	0.2	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.29	gi|564289817|ref|YP_008876077.1|	-	0.096	13.1	0.1	1	9.8	0.0	2.5	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
KTI12	PF08433.10	gi|564289817|ref|YP_008876077.1|	-	0.11	12.0	0.0	0.22	10.9	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_33	PF13671.6	gi|564289817|ref|YP_008876077.1|	-	0.14	12.3	0.1	0.32	11.1	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.13	gi|564289817|ref|YP_008876077.1|	-	0.15	11.2	0.0	0.27	10.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_28	PF13521.6	gi|564289817|ref|YP_008876077.1|	-	0.17	12.1	2.0	0.24	11.6	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
PIF1	PF05970.14	gi|564289817|ref|YP_008876077.1|	-	0.19	10.9	0.0	0.26	10.4	0.0	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
ParA	PF10609.9	gi|564289817|ref|YP_008876077.1|	-	0.51	9.7	3.5	1.9	7.9	3.5	1.9	1	1	0	1	1	1	0	NUBPL	iron-transfer	P-loop	NTPase
B12-binding	PF02310.19	gi|564289818|ref|YP_008876078.1|	-	5.3e-23	81.3	0.8	7.4e-23	80.9	0.7	1.3	1	1	0	1	1	1	1	B12	binding	domain
Glycos_transf_2	PF00535.26	gi|564289819|ref|YP_008876079.1|	-	8.2e-26	90.8	0.3	1e-25	90.5	0.3	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289819|ref|YP_008876079.1|	-	2.2e-09	37.6	0.6	2.6e-09	37.3	0.6	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|564289819|ref|YP_008876079.1|	-	7.8e-06	26.3	0.2	6.5e-05	23.4	0.0	2.1	1	1	0	2	2	2	1	Glycosyl	transferase	family	2
NTP_transf_3	PF12804.7	gi|564289819|ref|YP_008876079.1|	-	0.023	15.1	0.2	0.04	14.3	0.2	1.4	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
DUF2304	PF10066.9	gi|564289820|ref|YP_008876080.1|	-	7.8e-17	61.4	5.7	9e-17	61.2	5.7	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2304)
DUF2206	PF09971.9	gi|564289820|ref|YP_008876080.1|	-	0.0069	15.2	1.5	0.0072	15.1	1.5	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2206)
CPP1-like	PF11833.8	gi|564289820|ref|YP_008876080.1|	-	4	7.1	6.8	4.9	6.8	6.8	1.1	1	0	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DUF3473	PF11959.8	gi|564289821|ref|YP_008876081.1|	-	6.5e-26	90.9	0.0	9.7e-26	90.3	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3473)
Polysacc_deac_1	PF01522.21	gi|564289821|ref|YP_008876081.1|	-	1.4e-22	79.9	0.0	2.3e-22	79.2	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Glyco_hydro_57	PF03065.15	gi|564289821|ref|YP_008876081.1|	-	0.039	13.2	0.0	0.054	12.7	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	57
LPG_synthase_TM	PF03706.13	gi|564289822|ref|YP_008876082.1|	-	4.8e-32	111.7	44.9	5.9e-32	111.4	44.9	1.0	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
PMT_2	PF13231.6	gi|564289823|ref|YP_008876083.1|	-	3.9e-12	46.7	13.3	3.9e-12	46.7	13.3	3.1	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|564289823|ref|YP_008876083.1|	-	1e-06	28.5	10.6	2.9e-06	27.1	10.6	1.8	1	1	0	1	1	1	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF4131	PF13567.6	gi|564289823|ref|YP_008876083.1|	-	0.22	11.1	0.0	0.22	11.1	0.0	5.2	3	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4131)
Glycos_transf_2	PF00535.26	gi|564289824|ref|YP_008876084.1|	-	3.8e-20	72.4	0.0	5e-20	72.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289824|ref|YP_008876084.1|	-	9.1e-11	42.1	0.9	7.4e-10	39.1	0.9	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|564289824|ref|YP_008876084.1|	-	1.9e-07	31.2	0.3	3.2e-07	30.5	0.3	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|564289824|ref|YP_008876084.1|	-	2.3e-05	23.9	0.0	4.8e-05	22.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.9	gi|564289824|ref|YP_008876084.1|	-	0.0002	20.9	0.0	0.11	12.0	0.0	2.1	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.7	gi|564289824|ref|YP_008876084.1|	-	0.0006	20.2	0.1	0.00065	20.1	0.1	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
MFS_1	PF07690.16	gi|564289825|ref|YP_008876085.1|	-	1.3e-27	96.7	59.0	6.8e-22	77.9	23.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF2236	PF09995.9	gi|564289825|ref|YP_008876085.1|	-	0.12	12.5	0.0	0.12	12.5	0.0	3.4	4	0	0	4	4	4	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2236)
RHH_1	PF01402.21	gi|564289826|ref|YP_008876086.1|	-	0.024	14.6	0.5	0.055	13.4	0.0	1.7	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
DUF2407	PF10302.9	gi|564289826|ref|YP_008876086.1|	-	0.076	13.6	0.1	0.085	13.4	0.1	1.1	1	0	0	1	1	1	0	DUF2407	ubiquitin-like	domain
DUF3491	PF11996.8	gi|564289827|ref|YP_008876087.1|	-	0.002	16.0	0.0	0.0025	15.7	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3491)
DUF3693	PF12472.8	gi|564289827|ref|YP_008876087.1|	-	0.54	9.9	2.5	0.97	9.1	0.3	2.1	1	1	1	2	2	2	0	Phage	related	protein
DUF4129	PF13559.6	gi|564291330|ref|YP_008876089.1|	-	1.2e-06	28.6	3.1	1.2e-06	28.6	3.1	3.5	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4129)
DUF4198	PF10670.9	gi|564291330|ref|YP_008876089.1|	-	0.0024	18.3	4.8	0.28	11.5	0.3	3.2	2	1	1	3	3	3	2	Domain	of	unknown	function	(DUF4198)
CarbopepD_reg_2	PF13715.6	gi|564291330|ref|YP_008876089.1|	-	0.057	13.4	0.6	2.1	8.4	0.0	3.2	3	0	0	3	3	3	0	CarboxypepD_reg-like	domain
MetallophosN	PF16371.5	gi|564291330|ref|YP_008876089.1|	-	0.38	11.1	1.6	0.88	9.9	0.6	2.1	2	0	0	2	2	2	0	N	terminal	of	Calcineurin-like	phosphoesterase
CarboxypepD_reg	PF13620.6	gi|564291330|ref|YP_008876089.1|	-	3.7	7.9	34.2	0.43	10.9	2.4	5.6	4	2	1	5	5	5	0	Carboxypeptidase	regulatory-like	domain
DUF58	PF01882.18	gi|564289830|ref|YP_008876091.1|	-	8.4e-18	64.4	0.4	2.4e-17	63.0	0.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|564289830|ref|YP_008876091.1|	-	2.8e-09	37.2	0.6	2.8e-09	37.2	0.6	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|564289830|ref|YP_008876091.1|	-	2.1e-05	24.7	1.4	3.3e-05	24.1	0.1	2.0	2	0	0	2	2	2	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
TRAP_beta	PF05753.14	gi|564289830|ref|YP_008876091.1|	-	3.7e-05	23.2	0.0	8.6e-05	22.0	0.0	1.5	2	0	0	2	2	2	1	Translocon-associated	protein	beta	(TRAPB)
CARDB	PF07705.11	gi|564289830|ref|YP_008876091.1|	-	0.016	15.5	0.0	0.033	14.4	0.0	1.5	1	0	0	1	1	1	0	CARDB
AAA_3	PF07726.11	gi|564289832|ref|YP_008876093.1|	-	5.6e-65	217.1	0.1	9.2e-65	216.4	0.1	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|564289832|ref|YP_008876093.1|	-	2.1e-15	56.9	0.0	5.8e-15	55.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_lid_2	PF17863.1	gi|564289832|ref|YP_008876093.1|	-	2.2e-13	49.9	2.2	4.9e-13	48.7	2.2	1.6	1	0	0	1	1	1	1	AAA	lid	domain
AAA	PF00004.29	gi|564289832|ref|YP_008876093.1|	-	5.3e-07	30.1	0.0	1.8e-06	28.4	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|564289832|ref|YP_008876093.1|	-	1.5e-05	24.8	0.0	0.00015	21.5	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
MCM	PF00493.23	gi|564289832|ref|YP_008876093.1|	-	0.00011	21.4	0.0	0.00017	20.7	0.0	1.2	1	0	0	1	1	1	1	MCM	P-loop	domain
RuvB_N	PF05496.12	gi|564289832|ref|YP_008876093.1|	-	0.00017	21.4	0.0	0.0024	17.6	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|564289832|ref|YP_008876093.1|	-	0.0079	15.6	0.0	3.6	6.9	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.6	gi|564289832|ref|YP_008876093.1|	-	0.015	15.9	0.0	0.029	14.9	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF2237	PF09996.9	gi|564289833|ref|YP_008876094.1|	-	1.9e-49	166.4	0.0	2.2e-49	166.2	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2237)
AAA_12	PF13087.6	gi|564289834|ref|YP_008876095.1|	-	3.4e-41	141.1	0.0	5.2e-41	140.5	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_11	PF13086.6	gi|564289834|ref|YP_008876095.1|	-	9.2e-38	130.5	1.5	1.1e-18	67.9	0.7	2.6	2	1	1	3	3	3	2	AAA	domain
AAA_30	PF13604.6	gi|564289834|ref|YP_008876095.1|	-	2.1e-19	70.0	3.2	2.1e-19	70.0	3.2	2.6	3	1	0	3	3	3	1	AAA	domain
Dna2	PF08696.11	gi|564289834|ref|YP_008876095.1|	-	9.4e-17	61.5	0.0	5e-15	55.9	0.0	2.2	1	1	0	1	1	1	1	DNA	replication	factor	Dna2
AAA_19	PF13245.6	gi|564289834|ref|YP_008876095.1|	-	3.2e-14	53.5	0.7	4.1e-13	49.9	0.3	2.7	2	1	0	2	2	2	1	AAA	domain
PDDEXK_1	PF12705.7	gi|564289834|ref|YP_008876095.1|	-	9.7e-12	45.3	0.1	2.6e-11	43.9	0.0	1.7	2	0	0	2	2	1	1	PD-(D/E)XK	nuclease	superfamily
Viral_helicase1	PF01443.18	gi|564289834|ref|YP_008876095.1|	-	1e-07	32.0	0.1	0.032	14.0	0.0	3.5	4	0	0	4	4	3	3	Viral	(Superfamily	1)	RNA	helicase
UvrD-helicase	PF00580.21	gi|564289834|ref|YP_008876095.1|	-	1.6e-06	27.9	0.0	2.4e-06	27.3	0.0	1.3	1	0	0	1	1	1	1	UvrD/REP	helicase	N-terminal	domain
DUF2075	PF09848.9	gi|564289834|ref|YP_008876095.1|	-	3.4e-05	23.3	0.2	0.00017	21.0	0.0	2.0	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
UvrD_C_2	PF13538.6	gi|564289834|ref|YP_008876095.1|	-	0.00015	21.5	0.1	0.00083	19.1	0.0	2.4	2	0	0	2	2	2	1	UvrD-like	helicase	C-terminal	domain
AAA_16	PF13191.6	gi|564289834|ref|YP_008876095.1|	-	0.00027	21.4	0.4	0.00098	19.5	0.4	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
Helicase_RecD	PF05127.14	gi|564289834|ref|YP_008876095.1|	-	0.0003	20.7	0.0	0.00072	19.5	0.0	1.7	1	0	0	1	1	1	1	Helicase
AAA_22	PF13401.6	gi|564289834|ref|YP_008876095.1|	-	0.00033	20.9	0.0	0.0011	19.3	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
PIF1	PF05970.14	gi|564289834|ref|YP_008876095.1|	-	0.00095	18.4	0.0	0.05	12.8	0.0	2.2	2	0	0	2	2	2	1	PIF1-like	helicase
ResIII	PF04851.15	gi|564289834|ref|YP_008876095.1|	-	0.012	15.6	0.0	0.025	14.6	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
SRP54	PF00448.22	gi|564289834|ref|YP_008876095.1|	-	0.013	15.2	0.1	0.17	11.5	0.0	2.3	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.6	gi|564289834|ref|YP_008876095.1|	-	0.015	14.9	0.0	0.058	13.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.29	gi|564289834|ref|YP_008876095.1|	-	0.021	15.3	0.2	0.068	13.6	0.2	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.6	gi|564289834|ref|YP_008876095.1|	-	0.032	14.0	0.0	0.071	12.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|564289834|ref|YP_008876095.1|	-	0.036	13.4	0.0	0.09	12.1	0.0	1.6	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
TrwB_AAD_bind	PF10412.9	gi|564289834|ref|YP_008876095.1|	-	0.044	12.7	0.0	0.074	12.0	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_33	PF13671.6	gi|564289834|ref|YP_008876095.1|	-	0.047	13.8	0.0	0.16	12.1	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|564289834|ref|YP_008876095.1|	-	0.064	12.7	0.1	0.21	11.0	0.1	1.9	1	1	0	1	1	1	0	PhoH-like	protein
T2SSE	PF00437.20	gi|564289834|ref|YP_008876095.1|	-	0.074	12.1	0.0	0.12	11.4	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
CbiA	PF01656.23	gi|564289834|ref|YP_008876095.1|	-	0.082	13.0	0.1	0.21	11.6	0.1	1.9	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IstB_IS21	PF01695.17	gi|564289834|ref|YP_008876095.1|	-	0.091	12.5	0.0	0.21	11.3	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_5	PF07728.14	gi|564289834|ref|YP_008876095.1|	-	0.1	12.6	0.0	0.29	11.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
bPH_2	PF03703.14	gi|564289835|ref|YP_008876096.1|	-	3.9e-51	171.2	3.4	3.5e-18	65.6	0.1	3.2	3	0	0	3	3	3	3	Bacterial	PH	domain
bPH_4	PF06713.11	gi|564289835|ref|YP_008876096.1|	-	0.002	18.1	0.0	8	6.6	0.0	3.2	3	0	0	3	3	3	2	Bacterial	PH	domain
bPH_2	PF03703.14	gi|564289836|ref|YP_008876097.1|	-	5e-16	58.7	0.2	7e-16	58.2	0.2	1.2	1	0	0	1	1	1	1	Bacterial	PH	domain
TAT_signal	PF10518.9	gi|564289837|ref|YP_008876098.1|	-	0.04	13.8	4.6	0.088	12.7	4.6	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF5061	PF16587.5	gi|564289837|ref|YP_008876098.1|	-	0.094	12.8	0.1	0.34	11.0	0.1	1.8	1	1	0	1	1	1	0	17	kDa	common-antigen	outer	membrane	protein
DUF4690	PF15756.5	gi|564289837|ref|YP_008876098.1|	-	1.2	9.8	5.0	1.1	9.9	4.1	1.5	1	1	0	1	1	1	0	Small	Novel	Rich	in	Cartilage
DEAD_assoc	PF08494.11	gi|564289838|ref|YP_008876099.1|	-	5e-51	173.2	0.3	1.1e-50	172.1	0.3	1.6	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.29	gi|564289838|ref|YP_008876099.1|	-	3.8e-32	111.4	0.0	4.8e-30	104.6	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|564289838|ref|YP_008876099.1|	-	9.2e-20	71.0	0.1	3.2e-18	66.1	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|564289838|ref|YP_008876099.1|	-	2.6e-10	40.6	0.0	1.4e-09	38.2	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.6	gi|564289838|ref|YP_008876099.1|	-	0.0031	17.8	0.1	0.019	15.2	0.1	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|564289838|ref|YP_008876099.1|	-	0.0046	17.3	0.1	0.014	15.7	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
DHDPS	PF00701.22	gi|564289839|ref|YP_008876100.1|	-	4.2e-58	196.3	0.0	4.6e-58	196.2	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
DUF348	PF03990.14	gi|564289839|ref|YP_008876100.1|	-	0.6	9.9	0.0	0.6	9.9	0.0	3.2	4	0	0	4	4	4	0	G5-linked-Ubiquitin-like	domain
HTH_20	PF12840.7	gi|564289840|ref|YP_008876101.1|	-	1.5e-13	50.6	0.0	2.8e-13	49.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564289840|ref|YP_008876101.1|	-	3.8e-09	35.9	0.0	6.8e-09	35.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564289840|ref|YP_008876101.1|	-	9.8e-08	31.8	0.0	1.9e-07	30.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564289840|ref|YP_008876101.1|	-	2e-07	30.8	0.0	4e-07	29.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564289840|ref|YP_008876101.1|	-	0.00046	20.1	0.0	0.00076	19.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|564289840|ref|YP_008876101.1|	-	0.0014	19.1	0.0	0.0046	17.4	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_42	PF06224.12	gi|564289840|ref|YP_008876101.1|	-	0.0017	18.0	0.0	0.0032	17.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|564289840|ref|YP_008876101.1|	-	0.0025	17.7	0.0	0.0045	16.9	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564289840|ref|YP_008876101.1|	-	0.011	15.2	0.0	0.02	14.4	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_45	PF14947.6	gi|564289840|ref|YP_008876101.1|	-	0.029	14.3	0.0	0.049	13.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF2513	PF10711.9	gi|564289840|ref|YP_008876101.1|	-	0.035	14.4	0.0	0.064	13.6	0.0	1.4	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
Sigma70_r3	PF04539.16	gi|564289840|ref|YP_008876101.1|	-	0.045	13.9	0.0	0.13	12.4	0.0	1.8	1	0	0	1	1	1	0	Sigma-70	region	3
TrmB	PF01978.19	gi|564289840|ref|YP_008876101.1|	-	0.072	13.0	0.1	0.16	11.9	0.1	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
BLACT_WH	PF17778.1	gi|564289840|ref|YP_008876101.1|	-	0.15	12.0	0.3	0.6	10.1	0.3	2.0	1	1	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
Methyltransf_25	PF13649.6	gi|564289841|ref|YP_008876102.1|	-	5.3e-17	62.3	0.0	1.2e-16	61.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564289841|ref|YP_008876102.1|	-	1.3e-15	57.5	0.0	1.8e-15	57.0	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564289841|ref|YP_008876102.1|	-	1.1e-12	48.4	0.1	3.2e-12	46.9	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564289841|ref|YP_008876102.1|	-	1.7e-11	44.7	0.0	3e-11	43.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564289841|ref|YP_008876102.1|	-	8e-10	38.4	0.1	1.3e-09	37.7	0.1	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|564289841|ref|YP_008876102.1|	-	1.2e-06	28.5	0.0	1.9e-06	27.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564289841|ref|YP_008876102.1|	-	0.0004	20.0	0.0	0.0007	19.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|564289841|ref|YP_008876102.1|	-	0.0054	16.2	0.0	0.0072	15.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.6	gi|564289841|ref|YP_008876102.1|	-	0.0076	16.2	0.0	0.01	15.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.20	gi|564289841|ref|YP_008876102.1|	-	0.0098	15.2	0.0	0.013	14.9	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_18	PF12847.7	gi|564289841|ref|YP_008876102.1|	-	0.016	15.1	0.0	0.028	14.4	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|564289841|ref|YP_008876102.1|	-	0.018	14.8	0.0	0.026	14.3	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
DREV	PF05219.12	gi|564289841|ref|YP_008876102.1|	-	0.042	12.9	0.0	0.06	12.4	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_4	PF02390.17	gi|564289841|ref|YP_008876102.1|	-	0.075	12.5	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
tRNA_U5-meth_tr	PF05958.11	gi|564289841|ref|YP_008876102.1|	-	0.17	10.8	0.0	0.23	10.4	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
Lactamase_B_2	PF12706.7	gi|564289842|ref|YP_008876103.1|	-	3e-16	59.5	1.7	4.3e-16	59.0	1.7	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|564289842|ref|YP_008876103.1|	-	6.6e-14	52.4	2.0	8e-14	52.1	1.2	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.6	gi|564289842|ref|YP_008876103.1|	-	0.00034	20.5	0.0	0.00055	19.9	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|564289842|ref|YP_008876103.1|	-	0.012	15.1	0.0	0.019	14.4	0.0	1.3	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
PDEase_II	PF02112.15	gi|564289842|ref|YP_008876103.1|	-	0.23	10.5	0.0	0.32	10.0	0.0	1.2	1	0	0	1	1	1	0	cAMP	phosphodiesterases	class-II
HATPase_c	PF02518.26	gi|564289843|ref|YP_008876104.1|	-	1.7e-14	54.2	0.1	3.3e-14	53.3	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|564289843|ref|YP_008876104.1|	-	2.5e-14	53.7	0.4	5.6e-14	52.6	0.4	1.6	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|564289843|ref|YP_008876104.1|	-	7.1e-06	26.4	0.6	2.4e-05	24.7	0.6	1.9	1	1	0	1	1	1	1	GAF	domain
HisKA_4TM	PF16926.5	gi|564289843|ref|YP_008876104.1|	-	0.00033	20.2	0.2	0.0006	19.4	0.2	1.5	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
SPOB_a	PF14689.6	gi|564289843|ref|YP_008876104.1|	-	0.00037	20.1	0.0	0.0014	18.3	0.0	2.0	2	0	0	2	2	2	1	Sensor_kinase_SpoOB-type,	alpha-helical	domain
HisKA	PF00512.25	gi|564289843|ref|YP_008876104.1|	-	0.00044	20.2	0.3	0.0068	16.4	0.0	2.5	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
YnfE	PF17452.2	gi|564289843|ref|YP_008876104.1|	-	0.032	14.5	1.0	0.24	11.7	0.2	2.5	2	1	0	2	2	2	0	Uncharacterized	YnfE-like
Syntaxin_2	PF14523.6	gi|564289843|ref|YP_008876104.1|	-	0.13	12.6	0.0	0.34	11.3	0.0	1.7	2	0	0	2	2	2	0	Syntaxin-like	protein
TPR_7	PF13176.6	gi|564289843|ref|YP_008876104.1|	-	0.13	12.3	0.6	0.48	10.6	0.4	2.0	2	0	0	2	2	2	0	Tetratricopeptide	repeat
HAD_2	PF13419.6	gi|564289844|ref|YP_008876105.1|	-	6.6e-18	65.4	0.0	7.9e-18	65.2	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564289844|ref|YP_008876105.1|	-	1.3e-07	31.6	0.0	2.9e-07	30.5	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|564289844|ref|YP_008876105.1|	-	2.7e-07	31.1	0.0	1.7e-06	28.5	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HTH_20	PF12840.7	gi|564291331|ref|YP_008876106.1|	-	2e-09	37.4	0.2	4.4e-09	36.3	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564291331|ref|YP_008876106.1|	-	4.9e-06	26.3	0.0	7.8e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|564291331|ref|YP_008876106.1|	-	0.00027	20.7	0.3	0.00084	19.1	0.3	1.9	1	1	1	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564291331|ref|YP_008876106.1|	-	0.0017	18.2	0.1	0.0033	17.3	0.1	1.4	1	0	0	1	1	1	1	MarR	family
DprA_WH	PF17782.1	gi|564291331|ref|YP_008876106.1|	-	0.0022	18.1	0.2	0.0047	17.0	0.2	1.5	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_24	PF13412.6	gi|564291331|ref|YP_008876106.1|	-	0.003	17.1	0.1	0.0057	16.2	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|564291331|ref|YP_008876106.1|	-	0.0038	17.1	0.1	0.009	15.9	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|564291331|ref|YP_008876106.1|	-	0.006	16.4	0.1	0.011	15.7	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|564291331|ref|YP_008876106.1|	-	0.022	14.7	0.0	0.047	13.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_Crp_2	PF13545.6	gi|564291331|ref|YP_008876106.1|	-	0.057	13.4	0.1	0.1	12.6	0.1	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564291331|ref|YP_008876106.1|	-	0.089	12.6	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Rrf2	PF02082.20	gi|564291331|ref|YP_008876106.1|	-	0.11	12.8	0.0	0.21	12.0	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_45	PF14947.6	gi|564291331|ref|YP_008876106.1|	-	0.21	11.6	0.0	0.37	10.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
eRF1_1	PF03463.15	gi|564289845|ref|YP_008876107.1|	-	2.2e-26	92.4	0.1	3.6e-26	91.7	0.1	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.15	gi|564289845|ref|YP_008876107.1|	-	7.8e-22	77.9	1.7	1.7e-21	76.8	0.0	2.3	3	0	0	3	3	3	1	eRF1	domain	3
eRF1_2	PF03464.15	gi|564289845|ref|YP_008876107.1|	-	1.7e-08	34.9	0.2	9.9e-07	29.1	0.2	2.4	1	1	0	1	1	1	1	eRF1	domain	2
DUF4013	PF13197.6	gi|564289846|ref|YP_008876108.1|	-	2e-32	112.3	17.1	2e-32	112.3	17.1	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF4013)
Bac_export_2	PF01312.19	gi|564289846|ref|YP_008876108.1|	-	1.8	7.7	5.4	4.1	6.5	5.4	1.6	1	1	0	1	1	1	0	FlhB	HrpN	YscU	SpaS	Family
AIRS_C	PF02769.22	gi|564289847|ref|YP_008876109.1|	-	6.5e-25	88.1	1.7	1.2e-24	87.2	1.7	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|564289847|ref|YP_008876109.1|	-	4.5e-08	33.6	0.5	4.5e-08	33.6	0.5	1.9	2	1	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
FbpA	PF05833.11	gi|564289848|ref|YP_008876110.1|	-	2.4e-79	267.3	0.0	3.4e-79	266.7	0.0	1.2	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
NFACT-R_1	PF05670.13	gi|564289848|ref|YP_008876110.1|	-	1.2e-23	83.9	0.0	1.9e-23	83.2	0.0	1.4	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
NFACT-R_2	PF18297.1	gi|564289848|ref|YP_008876110.1|	-	0.00027	21.1	0.0	0.00083	19.5	0.0	1.8	1	0	0	1	1	1	1	NFACT	protein	RNA	binding	domain
CENP-Q	PF13094.6	gi|564289848|ref|YP_008876110.1|	-	8.1	6.6	10.3	0.48	10.6	0.6	2.4	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Amino_oxidase	PF01593.24	gi|564289849|ref|YP_008876111.1|	-	1.6e-17	63.9	1.5	7.9e-10	38.6	0.1	2.0	1	1	1	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|564289849|ref|YP_008876111.1|	-	1e-14	54.5	1.0	2.2e-14	53.4	1.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564289849|ref|YP_008876111.1|	-	3.6e-06	26.8	0.6	5e-06	26.3	0.6	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|564289849|ref|YP_008876111.1|	-	0.0016	18.4	1.3	0.42	10.6	0.1	2.7	3	0	0	3	3	3	2	FAD-NAD(P)-binding
FAD_binding_2	PF00890.24	gi|564289849|ref|YP_008876111.1|	-	0.0052	15.9	5.3	0.0072	15.5	2.9	2.1	1	1	1	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564289849|ref|YP_008876111.1|	-	0.0064	15.8	2.3	0.014	14.6	0.6	2.0	2	1	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564289849|ref|YP_008876111.1|	-	0.013	15.2	0.1	0.61	9.7	0.2	2.4	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
HI0933_like	PF03486.14	gi|564289849|ref|YP_008876111.1|	-	0.035	12.8	0.2	0.061	12.0	0.2	1.4	1	0	0	1	1	1	0	HI0933-like	protein
Thi4	PF01946.17	gi|564289849|ref|YP_008876111.1|	-	0.088	12.0	0.3	0.13	11.5	0.3	1.2	1	0	0	1	1	1	0	Thi4	family
Pyr_redox	PF00070.27	gi|564289849|ref|YP_008876111.1|	-	0.092	13.3	0.4	0.24	12.0	0.4	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564289849|ref|YP_008876111.1|	-	0.15	11.1	1.8	0.35	9.9	0.9	1.8	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
CARDB	PF07705.11	gi|564291333|ref|YP_008876113.1|	-	2.4e-25	88.8	74.0	2.5e-06	27.7	2.8	10.6	8	3	2	11	11	11	8	CARDB
DUF756	PF05506.12	gi|564291333|ref|YP_008876113.1|	-	2.6e-16	60.3	26.2	0.0019	19.1	0.1	9.3	7	2	1	9	9	9	4	Domain	of	unknown	function	(DUF756)
A2M	PF00207.22	gi|564291333|ref|YP_008876113.1|	-	0.00043	20.1	4.8	1	9.2	0.0	5.8	6	0	0	6	6	6	1	Alpha-2-macroglobulin	family
YebF	PF13995.6	gi|564291333|ref|YP_008876113.1|	-	0.0035	17.3	0.5	0.13	12.3	0.0	3.1	3	0	0	3	3	3	1	YebF-like	protein
Cupredoxin_1	PF13473.6	gi|564291333|ref|YP_008876113.1|	-	0.0059	16.7	9.3	21	5.3	0.1	7.1	6	2	0	7	7	7	0	Cupredoxin-like	domain
DUF1573	PF07610.11	gi|564291333|ref|YP_008876113.1|	-	0.0077	16.2	17.4	7.6	6.6	0.1	7.6	8	1	0	8	8	8	1	Protein	of	unknown	function	(DUF1573)
fn3_6	PF17766.1	gi|564291333|ref|YP_008876113.1|	-	1.2	9.4	20.0	1.4	9.1	0.4	6.3	5	2	2	7	7	7	0	Fibronectin	type-III	domain
4HBT	PF03061.22	gi|564291333|ref|YP_008876113.1|	-	1.6	9.1	8.3	11	6.4	0.2	4.7	4	0	0	4	4	4	0	Thioesterase	superfamily
Hamartin	PF04388.12	gi|564291333|ref|YP_008876113.1|	-	3.7	6.1	5.3	5.7	5.5	5.3	1.2	1	0	0	1	1	1	0	Hamartin	protein
BsuPI	PF12690.7	gi|564291333|ref|YP_008876113.1|	-	5.7	7.0	19.2	16	5.6	0.2	7.3	6	2	2	8	8	8	0	Intracellular	proteinase	inhibitor
PKD_3	PF16820.5	gi|564291333|ref|YP_008876113.1|	-	6.4	6.6	9.7	48	3.8	0.1	5.5	6	0	0	6	6	6	0	PKD-like	domain
Ig_3	PF13927.6	gi|564291333|ref|YP_008876113.1|	-	7	7.3	13.2	1.5e+02	3.0	0.0	7.4	5	2	2	7	7	7	0	Immunoglobulin	domain
Radical_SAM	PF04055.21	gi|564289850|ref|YP_008876114.1|	-	2.4e-26	93.1	0.1	9.6e-26	91.1	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
Radical_SAM_C	PF16199.5	gi|564289850|ref|YP_008876114.1|	-	2.9e-24	84.9	0.0	5.3e-24	84.1	0.0	1.4	1	0	0	1	1	1	1	Radical_SAM	C-terminal	domain
Acetyltransf_1	PF00583.25	gi|564289850|ref|YP_008876114.1|	-	3.9e-10	40.0	0.1	8.5e-10	38.9	0.1	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564289850|ref|YP_008876114.1|	-	3.5e-05	23.8	0.4	0.00013	21.9	0.4	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289850|ref|YP_008876114.1|	-	0.014	15.8	0.1	0.028	14.8	0.1	1.6	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Peptidase_C39_2	PF13529.6	gi|564289850|ref|YP_008876114.1|	-	0.12	12.9	0.0	0.32	11.5	0.0	1.6	1	1	0	1	1	1	0	Peptidase_C39	like	family
MCPsignal	PF00015.21	gi|564289852|ref|YP_008876116.1|	-	1.9e-38	132.0	28.5	1.9e-38	132.0	28.5	4.7	1	1	3	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|564289852|ref|YP_008876116.1|	-	0.00015	22.1	0.3	0.00015	22.1	0.3	3.9	4	0	0	4	4	4	1	HAMP	domain
DUF948	PF06103.11	gi|564289852|ref|YP_008876116.1|	-	0.0077	16.5	46.1	0.15	12.3	8.2	6.2	3	2	1	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
DUF4131	PF13567.6	gi|564289852|ref|YP_008876116.1|	-	0.009	15.7	1.1	0.35	10.5	0.0	2.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4131)
Phage_holin_3_6	PF07332.11	gi|564289852|ref|YP_008876116.1|	-	0.038	14.0	0.2	0.038	14.0	0.2	4.3	3	1	1	4	4	4	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF2140	PF09911.9	gi|564289852|ref|YP_008876116.1|	-	0.044	13.3	0.0	0.14	11.7	0.0	1.9	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2140)
Syntaxin-6_N	PF09177.11	gi|564289852|ref|YP_008876116.1|	-	0.21	12.2	42.6	1.4	9.5	7.2	5.4	3	2	2	5	5	5	0	Syntaxin	6,	N-terminal
DUF4381	PF14316.6	gi|564289852|ref|YP_008876116.1|	-	0.4	10.9	5.9	0.056	13.7	0.9	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4381)
Seryl_tRNA_N	PF02403.22	gi|564289852|ref|YP_008876116.1|	-	0.7	10.1	49.4	1.2	9.4	0.5	5.6	1	1	2	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
OATP	PF03137.20	gi|564289852|ref|YP_008876116.1|	-	1.2	7.3	3.4	1.5	7.0	2.5	1.6	1	1	0	1	1	1	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Laminin_II	PF06009.12	gi|564289852|ref|YP_008876116.1|	-	2.4	8.2	50.6	0.078	13.0	3.7	5.2	3	2	2	5	5	5	0	Laminin	Domain	II
DUF2935	PF11155.8	gi|564289852|ref|YP_008876116.1|	-	3.5	8.0	11.2	1.5	9.1	0.0	3.7	3	2	0	3	3	3	0	Domain	of	unknown	function	(DUF2935)
Spc7	PF08317.11	gi|564289852|ref|YP_008876116.1|	-	7.4	5.3	56.2	0.067	12.1	12.0	3.9	1	1	3	4	4	4	0	Spc7	kinetochore	protein
RseA_C	PF03873.13	gi|564289852|ref|YP_008876116.1|	-	8.9	6.6	6.9	0.41	10.9	0.3	2.3	2	0	0	2	2	1	0	Anti	sigma-E	protein	RseA,	C-terminal	domain
Cupin_2	PF07883.11	gi|564289853|ref|YP_008876117.1|	-	2e-13	49.8	0.1	3.1e-13	49.2	0.1	1.3	1	0	0	1	1	1	1	Cupin	domain
Cupin_6	PF12852.7	gi|564289853|ref|YP_008876117.1|	-	0.0039	16.9	0.0	0.0046	16.7	0.0	1.2	1	0	0	1	1	1	1	Cupin
Cupin_3	PF05899.12	gi|564289853|ref|YP_008876117.1|	-	0.0094	15.6	0.0	0.02	14.6	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|564289853|ref|YP_008876117.1|	-	0.02	14.8	0.0	0.03	14.2	0.0	1.3	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Ectoine_synth	PF06339.12	gi|564289853|ref|YP_008876117.1|	-	0.027	14.7	0.0	0.032	14.4	0.0	1.2	1	0	0	1	1	1	0	Ectoine	synthase
DUF4437	PF14499.6	gi|564289853|ref|YP_008876117.1|	-	0.067	12.3	0.0	0.091	11.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4437)
tRNA_anti-codon	PF01336.25	gi|564289854|ref|YP_008876118.1|	-	2.3e-11	43.5	0.1	6.5e-11	42.1	0.1	1.8	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
S1	PF00575.23	gi|564289854|ref|YP_008876118.1|	-	4e-07	30.3	0.3	1.8e-06	28.2	0.0	2.4	2	0	0	2	2	2	1	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|564289854|ref|YP_008876118.1|	-	0.00018	21.6	0.0	0.0006	20.0	0.0	1.9	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Apt1	PF10351.9	gi|564289854|ref|YP_008876118.1|	-	1.4	7.7	4.6	2.1	7.1	4.6	1.3	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
RecJ_OB	PF17768.1	gi|564289855|ref|YP_008876119.1|	-	0.016	15.5	0.0	0.017	15.3	0.0	1.1	1	0	0	1	1	1	0	RecJ	OB	domain
Yip1	PF04893.17	gi|564289856|ref|YP_008876120.1|	-	4.5e-09	36.3	10.7	6.2e-09	35.8	10.7	1.2	1	0	0	1	1	1	1	Yip1	domain
FMN_red	PF03358.15	gi|564289857|ref|YP_008876121.1|	-	6.5e-33	113.7	0.0	7.8e-33	113.4	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.17	gi|564289857|ref|YP_008876121.1|	-	2.6e-07	30.5	0.0	4e-07	29.9	0.0	1.3	1	0	0	1	1	1	1	Flavodoxin-like	fold
B12-binding	PF02310.19	gi|564289859|ref|YP_008876123.1|	-	1.2e-16	60.8	0.2	1.6e-16	60.4	0.2	1.2	1	0	0	1	1	1	1	B12	binding	domain
ADH_zinc_N	PF00107.26	gi|564289859|ref|YP_008876123.1|	-	0.0017	18.3	0.0	0.022	14.7	0.0	2.1	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
ACT	PF01842.25	gi|564289859|ref|YP_008876123.1|	-	0.25	11.1	1.6	5.7	6.8	0.1	2.5	2	1	0	2	2	2	0	ACT	domain
Acetyltransf_1	PF00583.25	gi|564289860|ref|YP_008876124.1|	-	8.7e-15	55.0	0.0	1e-14	54.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564289860|ref|YP_008876124.1|	-	1.1e-14	54.4	0.0	1.6e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564289860|ref|YP_008876124.1|	-	1.9e-12	47.4	0.0	2.7e-12	46.9	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564289860|ref|YP_008876124.1|	-	4.8e-08	33.3	0.0	8e-08	32.6	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564289860|ref|YP_008876124.1|	-	9.3e-07	28.7	0.0	1.5e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|564289860|ref|YP_008876124.1|	-	8e-06	26.6	0.0	9.3e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|564289860|ref|YP_008876124.1|	-	0.001	19.2	1.4	0.0016	18.6	1.0	1.6	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564289860|ref|YP_008876124.1|	-	0.037	14.1	0.1	0.2	11.7	0.1	2.1	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Na_Ca_ex	PF01699.24	gi|564289861|ref|YP_008876125.1|	-	1e-34	119.7	30.9	3.9e-18	65.9	13.3	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Tetraspanin	PF00335.20	gi|564289861|ref|YP_008876125.1|	-	1.1	8.9	0.0	1.1	8.9	0.0	3.8	2	2	2	4	4	4	0	Tetraspanin	family
HhH-GPD	PF00730.25	gi|564289862|ref|YP_008876126.1|	-	1.2e-16	61.0	0.0	2.3e-16	60.2	0.0	1.4	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.23	gi|564289862|ref|YP_008876126.1|	-	5e-06	26.1	0.0	1.1e-05	25.1	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HATPase_c	PF02518.26	gi|564289863|ref|YP_008876127.1|	-	1.7e-14	54.2	0.0	3.8e-14	53.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564289863|ref|YP_008876127.1|	-	9.3e-14	51.2	0.7	9.3e-14	51.2	0.7	2.0	1	1	1	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HAMP	PF00672.25	gi|564289863|ref|YP_008876127.1|	-	3.5e-13	49.7	1.0	3.5e-13	49.7	1.0	2.1	2	0	0	2	2	2	1	HAMP	domain
HATPase_c_3	PF13589.6	gi|564289863|ref|YP_008876127.1|	-	0.0019	18.1	0.0	0.0052	16.6	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Exonuc_VII_L	PF02601.15	gi|564289863|ref|YP_008876127.1|	-	0.0025	17.5	0.3	0.0048	16.5	0.1	1.7	2	0	0	2	2	2	1	Exonuclease	VII,	large	subunit
Spc29	PF17082.5	gi|564289863|ref|YP_008876127.1|	-	0.0098	15.8	1.8	0.015	15.1	1.8	1.3	1	0	0	1	1	1	1	Spindle	Pole	Component	29
GAS	PF13851.6	gi|564289863|ref|YP_008876127.1|	-	0.01	15.2	1.4	0.062	12.6	1.6	1.5	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
CEP209_CC5	PF16574.5	gi|564289863|ref|YP_008876127.1|	-	0.011	16.0	0.7	0.021	15.0	0.7	1.4	1	0	0	1	1	1	0	Coiled-coil	region	of	centrosome	protein	CE290
Tropomyosin	PF00261.20	gi|564289863|ref|YP_008876127.1|	-	0.058	12.8	3.4	0.69	9.2	0.9	2.1	2	0	0	2	2	2	0	Tropomyosin
DUF3450	PF11932.8	gi|564289863|ref|YP_008876127.1|	-	0.067	12.5	0.5	0.14	11.4	0.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
Spc7	PF08317.11	gi|564289863|ref|YP_008876127.1|	-	0.097	11.5	1.9	0.15	10.9	1.9	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF4200	PF13863.6	gi|564289863|ref|YP_008876127.1|	-	0.32	11.4	3.6	0.79	10.1	3.6	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
KfrA_N	PF11740.8	gi|564289863|ref|YP_008876127.1|	-	1.4	9.6	6.8	1.6	9.5	3.7	2.6	2	0	0	2	2	2	0	Plasmid	replication	region	DNA-binding	N-term
CorA	PF01544.18	gi|564289863|ref|YP_008876127.1|	-	1.6	8.0	4.9	3	7.1	4.9	1.5	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Hemerythrin	PF01814.23	gi|564289863|ref|YP_008876127.1|	-	10	6.8	8.9	43	4.7	8.9	2.1	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
DUF3695	PF12494.8	gi|564289864|ref|YP_008876128.1|	-	0.11	12.3	0.6	0.18	11.7	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3695)
DUF4010	PF13194.6	gi|564289865|ref|YP_008876129.1|	-	1.1e-51	175.6	25.9	1.1e-51	175.6	25.9	2.7	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4010)
MgtC	PF02308.16	gi|564289865|ref|YP_008876129.1|	-	8.1e-23	81.1	13.3	8.1e-23	81.1	13.3	4.1	2	1	2	4	4	4	1	MgtC	family
HisKA_7TM	PF16927.5	gi|564289866|ref|YP_008876130.1|	-	1.7e-36	126.3	7.2	2.4e-36	125.9	7.2	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
PAS	PF00989.25	gi|564289866|ref|YP_008876130.1|	-	8.3e-20	70.9	0.0	5.2e-12	45.8	0.0	3.3	2	1	0	2	2	2	2	PAS	fold
PAS_4	PF08448.10	gi|564289866|ref|YP_008876130.1|	-	1e-18	67.6	1.5	1.4e-08	34.9	0.1	3.0	2	1	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|564289866|ref|YP_008876130.1|	-	2.3e-17	63.5	0.0	4.6e-17	62.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|564289866|ref|YP_008876130.1|	-	5.1e-13	49.1	0.0	1.4e-12	47.8	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564289866|ref|YP_008876130.1|	-	2.3e-12	46.6	0.1	4.1e-05	23.5	0.0	3.0	2	0	0	2	2	2	2	PAS	domain
HisKA	PF00512.25	gi|564289866|ref|YP_008876130.1|	-	1.1e-11	44.6	0.6	2.7e-11	43.3	0.6	1.7	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|564289866|ref|YP_008876130.1|	-	2.7e-11	43.7	0.0	3.3e-05	24.1	0.0	3.3	2	1	0	2	2	2	2	PAS	domain
HATPase_c_2	PF13581.6	gi|564289866|ref|YP_008876130.1|	-	0.0019	18.1	0.1	0.0087	16.0	0.1	2.1	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
PAS_11	PF14598.6	gi|564289866|ref|YP_008876130.1|	-	0.011	15.8	0.0	0.023	14.8	0.0	1.5	1	0	0	1	1	1	0	PAS	domain
PAS_7	PF12860.7	gi|564289866|ref|YP_008876130.1|	-	0.065	13.4	0.1	2.3	8.4	0.1	3.0	2	2	0	2	2	2	0	PAS	fold
PAP2_3	PF14378.6	gi|564289866|ref|YP_008876130.1|	-	0.099	12.3	1.0	0.12	12.0	0.1	1.6	2	0	0	2	2	2	0	PAP2	superfamily
Spc7	PF08317.11	gi|564289866|ref|YP_008876130.1|	-	0.17	10.8	0.9	0.26	10.1	0.9	1.2	1	0	0	1	1	1	0	Spc7	kinetochore	protein
PadR	PF03551.14	gi|564289867|ref|YP_008876131.1|	-	6.2e-18	64.5	1.0	7.4e-18	64.3	1.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|564289867|ref|YP_008876131.1|	-	0.0022	17.8	0.0	0.0032	17.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|564289867|ref|YP_008876131.1|	-	0.0083	16.1	0.0	0.01	15.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|564289867|ref|YP_008876131.1|	-	0.0091	15.9	0.1	1.7	8.6	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_27	PF13463.6	gi|564289867|ref|YP_008876131.1|	-	0.014	15.9	0.2	0.018	15.5	0.2	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.6	gi|564289867|ref|YP_008876131.1|	-	0.11	12.7	0.0	0.13	12.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|564289867|ref|YP_008876131.1|	-	0.17	11.6	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HypA	PF01155.19	gi|564289869|ref|YP_008876133.1|	-	0.0037	17.3	0.6	0.0069	16.4	0.6	1.4	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|564289869|ref|YP_008876133.1|	-	0.0081	16.2	0.3	0.016	15.2	0.3	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|564289869|ref|YP_008876133.1|	-	0.049	13.8	0.9	0.13	12.4	0.9	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF1451	PF07295.11	gi|564289869|ref|YP_008876133.1|	-	0.051	13.6	0.5	0.18	11.8	0.5	1.9	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
TF_Zn_Ribbon	PF08271.12	gi|564289869|ref|YP_008876133.1|	-	0.056	13.0	1.8	0.12	11.9	1.6	1.7	1	1	0	1	1	1	0	TFIIB	zinc-binding
ArfGap	PF01412.18	gi|564289869|ref|YP_008876133.1|	-	0.081	13.0	0.1	0.13	12.3	0.1	1.3	1	0	0	1	1	1	0	Putative	GTPase	activating	protein	for	Arf
zf-IS66	PF13005.7	gi|564289869|ref|YP_008876133.1|	-	0.086	13.3	2.1	1.3	9.5	0.2	2.7	2	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
A2L_zn_ribbon	PF08792.10	gi|564289869|ref|YP_008876133.1|	-	0.12	12.2	0.8	7.2	6.5	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zinc_ribbon_5	PF13719.6	gi|564289869|ref|YP_008876133.1|	-	0.23	11.3	0.6	9.7	6.0	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
GATA	PF00320.27	gi|564289869|ref|YP_008876133.1|	-	0.23	11.1	0.1	0.23	11.1	0.1	2.2	3	0	0	3	3	3	0	GATA	zinc	finger
zf-HYPF	PF07503.12	gi|564289869|ref|YP_008876133.1|	-	1.2	9.0	5.9	3.7	7.4	3.9	2.7	2	1	0	2	2	2	0	HypF	finger
TFIIS_C	PF01096.18	gi|564289869|ref|YP_008876133.1|	-	2.6	8.0	5.4	16	5.5	1.7	2.7	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
UPF0547	PF10571.9	gi|564289869|ref|YP_008876133.1|	-	3.6	7.7	6.8	5.2	7.2	0.2	2.8	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
NUDIX	PF00293.28	gi|564289870|ref|YP_008876134.1|	-	9.2e-13	48.4	0.4	1.1e-12	48.1	0.4	1.2	1	0	0	1	1	1	1	NUDIX	domain
KH_1	PF00013.29	gi|564289870|ref|YP_008876134.1|	-	0.082	12.7	0.0	0.13	12.1	0.0	1.3	1	0	0	1	1	1	0	KH	domain
THF_DHG_CYH_C	PF02882.19	gi|564289871|ref|YP_008876135.1|	-	1.3e-66	222.8	1.7	1.8e-66	222.4	1.7	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|564289871|ref|YP_008876135.1|	-	1.5e-36	125.1	0.8	2.5e-36	124.5	0.8	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
DUF2057	PF09829.9	gi|564289872|ref|YP_008876136.1|	-	0.21	11.8	1.9	14	5.7	2.6	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2057)
SHMT	PF00464.19	gi|564289873|ref|YP_008876137.1|	-	5e-152	506.1	0.0	5.9e-152	505.9	0.0	1.0	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.21	gi|564289873|ref|YP_008876137.1|	-	7.4e-08	32.0	0.0	1.4e-07	31.1	0.0	1.4	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|564289873|ref|YP_008876137.1|	-	0.00019	20.8	0.0	0.022	14.0	0.0	2.2	1	1	0	1	1	1	1	Beta-eliminating	lyase
DUF348	PF03990.14	gi|564289873|ref|YP_008876137.1|	-	0.098	12.4	0.3	0.43	10.3	0.0	2.2	2	0	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
DegT_DnrJ_EryC1	PF01041.17	gi|564289873|ref|YP_008876137.1|	-	0.16	11.2	0.4	0.27	10.5	0.4	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
CHAT	PF12770.7	gi|564289874|ref|YP_008876138.1|	-	0.0029	17.1	0.1	0.015	14.8	0.1	2.0	1	1	0	1	1	1	1	CHAT	domain
T6SS_VasE	PF05936.12	gi|564289875|ref|YP_008876139.1|	-	0.0087	14.8	0.1	0.036	12.8	0.0	1.8	2	0	0	2	2	2	1	Bacterial	Type	VI	secretion,	VC_A0110,	EvfL,	ImpJ,	VasE
YcaO	PF02624.16	gi|564289876|ref|YP_008876140.1|	-	4.9e-50	170.6	7.2	6.4e-50	170.3	7.2	1.2	1	0	0	1	1	1	1	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
DUF63	PF01889.17	gi|564289877|ref|YP_008876141.1|	-	4.1e-37	128.8	13.7	8.2e-37	127.9	11.6	2.2	2	1	0	2	2	2	1	Membrane	protein	of	unknown	function	DUF63
Phage_Coat_Gp8	PF05371.12	gi|564289877|ref|YP_008876141.1|	-	0.015	15.0	0.2	0.046	13.5	0.2	1.8	1	0	0	1	1	1	0	Phage	major	coat	protein,	Gp8
Inositol_P	PF00459.25	gi|564289878|ref|YP_008876142.1|	-	2e-48	165.3	0.2	2.2e-48	165.1	0.2	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
BMFP	PF04380.13	gi|564289878|ref|YP_008876142.1|	-	0.21	12.1	1.1	0.53	10.8	1.1	1.7	1	1	0	1	1	1	0	Membrane	fusogenic	activity
DUF5446	PF17522.2	gi|564289879|ref|YP_008876143.1|	-	0.0041	17.2	0.2	0.005	17.0	0.2	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5446)
Glycos_transf_2	PF00535.26	gi|564289880|ref|YP_008876144.1|	-	6.4e-23	81.4	0.0	8.9e-23	80.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564289880|ref|YP_008876144.1|	-	3.9e-05	23.7	0.0	5.2e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Metallopep	PF12044.8	gi|564289881|ref|YP_008876145.1|	-	0.026	13.2	0.0	0.039	12.6	0.0	1.2	1	0	0	1	1	1	0	Putative	peptidase	family
Peptidase_M66	PF10462.9	gi|564289881|ref|YP_008876145.1|	-	0.028	13.4	0.2	0.036	13.0	0.2	1.3	1	0	0	1	1	1	0	Peptidase	M66
Reprolysin_3	PF13582.6	gi|564289881|ref|YP_008876145.1|	-	0.033	14.7	0.8	0.12	12.9	0.8	2.0	1	1	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_4	PF13583.6	gi|564289881|ref|YP_008876145.1|	-	0.049	13.3	1.6	0.091	12.4	1.6	1.5	1	1	0	1	1	1	0	Metallo-peptidase	family	M12B	Reprolysin-like
PsbR	PF04725.12	gi|564289881|ref|YP_008876145.1|	-	0.13	12.7	0.3	0.13	12.7	0.3	2.5	3	0	0	3	3	3	0	Photosystem	II	10	kDa	polypeptide	PsbR
Binary_toxB	PF03495.14	gi|564289881|ref|YP_008876145.1|	-	0.33	11.2	3.6	41	4.4	3.6	2.7	1	1	0	1	1	1	0	Clostridial	binary	toxin	B/anthrax	toxin	PA	Ca-binding	domain
DUF58	PF01882.18	gi|564289882|ref|YP_008876146.1|	-	1.9e-20	72.9	0.1	4.8e-20	71.6	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
Big_3_5	PF16640.5	gi|564289882|ref|YP_008876146.1|	-	6.5	7.0	13.2	1.6	9.0	1.6	2.9	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
MaAIMP_sms	PF16951.5	gi|564289883|ref|YP_008876147.1|	-	1.8	8.3	0.0	1.8	8.3	0.0	2.8	2	1	1	3	3	3	0	Putative	methionine	and	alanine	importer,	small	subunit
AAA_3	PF07726.11	gi|564289885|ref|YP_008876149.1|	-	1.1e-60	203.2	0.4	1.7e-60	202.6	0.4	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|564289885|ref|YP_008876149.1|	-	2e-21	75.6	0.8	3.8e-21	74.7	0.8	1.5	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|564289885|ref|YP_008876149.1|	-	5.5e-18	65.3	0.0	6.1e-17	61.9	0.0	2.2	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.23	gi|564289885|ref|YP_008876149.1|	-	5.5e-09	35.5	0.0	1.5e-08	34.0	0.0	1.8	1	1	1	2	2	2	1	MCM	P-loop	domain
Sigma54_activat	PF00158.26	gi|564289885|ref|YP_008876149.1|	-	1.8e-07	31.0	0.1	2.1e-06	27.5	0.1	2.2	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.21	gi|564289885|ref|YP_008876149.1|	-	4.7e-06	26.1	0.2	0.1	12.0	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RuvB_N	PF05496.12	gi|564289885|ref|YP_008876149.1|	-	2.2e-05	24.3	0.1	0.00013	21.7	0.1	2.2	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA	PF00004.29	gi|564289885|ref|YP_008876149.1|	-	4.3e-05	23.9	0.0	0.00011	22.6	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.6	gi|564289885|ref|YP_008876149.1|	-	0.084	13.3	0.4	0.37	11.1	0.3	2.3	1	1	1	2	2	2	0	AAA	ATPase	domain
DUF4350	PF14258.6	gi|564289886|ref|YP_008876150.1|	-	1.2e-09	38.4	1.9	2.4e-09	37.5	0.4	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
ABC_transp_aux	PF09822.9	gi|564289886|ref|YP_008876150.1|	-	0.0017	17.9	0.0	0.0027	17.2	0.0	1.3	1	0	0	1	1	1	1	ABC-type	uncharacterized	transport	system
Glyco_hydro_42M	PF08532.10	gi|564289886|ref|YP_008876150.1|	-	0.029	13.9	0.1	1.4	8.3	0.0	2.2	2	0	0	2	2	2	0	Beta-galactosidase	trimerisation	domain
TrbC	PF04956.13	gi|564289887|ref|YP_008876151.1|	-	0.33	11.2	3.5	0.27	11.5	1.0	1.8	1	1	1	2	2	2	0	TrbC/VIRB2	family
DUF3040	PF11239.8	gi|564289887|ref|YP_008876151.1|	-	0.4	11.0	7.6	0.54	10.6	2.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF2530	PF10745.9	gi|564289887|ref|YP_008876151.1|	-	1.5	9.1	7.5	0.28	11.4	1.7	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2530)
FtsX	PF02687.21	gi|564289888|ref|YP_008876152.1|	-	1.8e-09	38.0	3.7	1.8e-09	38.0	3.7	4.6	5	1	0	5	5	5	2	FtsX-like	permease	family
CARDB	PF07705.11	gi|564289888|ref|YP_008876152.1|	-	0.00063	20.0	6.9	0.0013	19.0	2.1	3.2	3	0	0	3	3	3	1	CARDB
PMP1_2	PF08114.11	gi|564289888|ref|YP_008876152.1|	-	0.43	10.3	2.3	3.2	7.6	2.3	2.6	1	0	0	1	1	1	0	ATPase	proteolipid	family
ChpA-C	PF03777.13	gi|564289888|ref|YP_008876152.1|	-	3.8	7.5	8.0	21	5.1	1.5	3.1	2	0	0	2	2	2	0	ChpA-C
ABC_tran	PF00005.27	gi|564289889|ref|YP_008876153.1|	-	2.2e-30	105.9	0.0	3.4e-30	105.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564289889|ref|YP_008876153.1|	-	1.2e-05	25.3	0.1	0.09	12.6	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564289889|ref|YP_008876153.1|	-	0.00057	19.4	0.1	0.014	14.9	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564289889|ref|YP_008876153.1|	-	0.0009	18.9	0.1	0.0016	18.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564289889|ref|YP_008876153.1|	-	0.0017	18.8	1.0	0.0032	17.9	1.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564289889|ref|YP_008876153.1|	-	0.0086	16.0	0.2	0.016	15.1	0.1	1.5	2	0	0	2	2	2	1	RsgA	GTPase
TniB	PF05621.11	gi|564289889|ref|YP_008876153.1|	-	0.055	12.9	0.0	0.88	8.9	0.0	2.2	2	0	0	2	2	2	0	Bacterial	TniB	protein
SbcCD_C	PF13558.6	gi|564289889|ref|YP_008876153.1|	-	0.073	13.3	0.1	1.3	9.3	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_22	PF13401.6	gi|564289889|ref|YP_008876153.1|	-	0.08	13.2	0.0	0.72	10.1	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|564289889|ref|YP_008876153.1|	-	0.11	12.2	0.0	0.29	10.8	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
T2SSE	PF00437.20	gi|564289889|ref|YP_008876153.1|	-	0.14	11.2	0.0	0.22	10.6	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MMR_HSR1	PF01926.23	gi|564289889|ref|YP_008876153.1|	-	0.16	12.1	0.0	0.33	11.0	0.0	1.6	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_33	PF13671.6	gi|564289889|ref|YP_008876153.1|	-	0.17	12.0	0.2	0.58	10.3	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
YfhO	PF09586.10	gi|564289890|ref|YP_008876154.1|	-	5.1e-05	21.8	0.3	0.044	12.0	0.9	2.1	1	1	1	2	2	2	2	Bacterial	membrane	protein	YfhO
LST1	PF05083.13	gi|564289890|ref|YP_008876154.1|	-	0.32	11.3	0.9	1.3	9.3	0.0	2.5	2	0	0	2	2	2	0	LST-1	protein
MG4	PF17789.1	gi|564289891|ref|YP_008876155.1|	-	0.0017	18.5	0.2	0.0017	18.5	0.2	4.2	4	1	1	5	5	5	1	Macroglobulin	domain	MG4
DUF4129	PF13559.6	gi|564289891|ref|YP_008876155.1|	-	0.0025	18.0	3.0	0.0082	16.4	2.6	2.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
LPP	PF04728.13	gi|564289891|ref|YP_008876155.1|	-	1.1	9.7	7.6	0.16	12.4	2.4	2.3	2	0	0	2	2	2	0	Lipoprotein	leucine-zipper
DUF1616	PF07760.11	gi|564289892|ref|YP_008876156.1|	-	3.4e-122	407.5	0.2	3.8e-122	407.3	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF4870	PF09685.10	gi|564289892|ref|YP_008876156.1|	-	0.24	11.5	0.0	0.24	11.5	0.0	2.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4870)
YdjM	PF04307.14	gi|564289893|ref|YP_008876157.1|	-	5e-07	29.2	10.6	7.2e-07	28.7	10.6	1.3	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
A2L_zn_ribbon	PF08792.10	gi|564289894|ref|YP_008876158.1|	-	0.00021	20.9	1.9	0.00027	20.5	1.9	1.1	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|564289894|ref|YP_008876158.1|	-	0.0046	16.9	1.1	0.0058	16.6	1.1	1.1	1	0	0	1	1	1	1	PhnA	Zinc-Ribbon
zf-ribbon_3	PF13248.6	gi|564289894|ref|YP_008876158.1|	-	0.007	15.7	1.2	0.17	11.3	0.1	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564289894|ref|YP_008876158.1|	-	0.0088	16.0	0.7	0.014	15.4	0.7	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|564289894|ref|YP_008876158.1|	-	0.013	15.0	2.1	0.018	14.5	2.1	1.2	1	0	0	1	1	1	0	TFIIB	zinc-binding
Auto_anti-p27	PF06677.12	gi|564289894|ref|YP_008876158.1|	-	0.02	15.1	2.4	0.026	14.7	2.4	1.2	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-HIT	PF04438.16	gi|564289894|ref|YP_008876158.1|	-	0.021	14.7	1.2	1.2	9.1	0.2	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
DUF5472	PF17566.2	gi|564289894|ref|YP_008876158.1|	-	0.071	13.1	0.1	0.076	13.0	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5472)
zf-trcl	PF13451.6	gi|564289894|ref|YP_008876158.1|	-	0.14	12.1	1.4	2.4	8.1	0.1	2.1	1	1	1	2	2	2	0	Probable	zinc-ribbon	domain
PGF-CTERM	PF18204.1	gi|564289895|ref|YP_008876159.1|	-	7.5e-06	25.7	3.9	1.9e-05	24.5	3.9	1.7	1	0	0	1	1	1	1	PGF-CTERM	motif
DUF309	PF03745.14	gi|564289897|ref|YP_008876161.1|	-	6.7e-15	54.5	0.1	1.1e-14	53.9	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
AstE_AspA	PF04952.14	gi|564289898|ref|YP_008876162.1|	-	2.9e-15	56.1	0.0	3.5e-15	55.9	0.0	1.1	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Peptidase_M99	PF17033.5	gi|564289898|ref|YP_008876162.1|	-	0.011	15.2	0.0	0.015	14.8	0.0	1.1	1	0	0	1	1	1	0	Carboxypeptidase	controlling	helical	cell	shape	catalytic
tRNA_edit	PF04073.15	gi|564289899|ref|YP_008876164.1|	-	1.6e-31	109.0	0.3	1.9e-31	108.7	0.3	1.1	1	0	0	1	1	1	1	Aminoacyl-tRNA	editing	domain
DUF4157	PF13699.6	gi|564289899|ref|YP_008876164.1|	-	0.19	11.9	2.0	0.77	10.0	0.6	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4157)
bMG5	PF17972.1	gi|564289901|ref|YP_008876166.1|	-	0.037	14.4	0.5	0.11	12.9	0.3	1.8	2	0	0	2	2	2	0	Bacterial	Alpha-2-macroglobulin	MG5	domain
YdjM	PF04307.14	gi|564289902|ref|YP_008876167.1|	-	5.3e-14	51.9	8.0	6.9e-14	51.5	8.0	1.2	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
VAPB_antitox	PF02697.14	gi|564289903|ref|YP_008876168.1|	-	8.2e-16	58.5	1.2	1.1e-15	58.2	1.2	1.2	1	0	0	1	1	1	1	Putative	antitoxin
efThoc1	PF11957.8	gi|564289903|ref|YP_008876168.1|	-	0.038	12.7	0.0	0.062	12.0	0.0	1.2	1	0	0	1	1	1	0	THO	complex	subunit	1	transcription	elongation	factor
OrfB_Zn_ribbon	PF07282.11	gi|564289904|ref|YP_008876169.1|	-	1.4e-19	69.7	0.5	2.4e-19	69.0	0.5	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|564289904|ref|YP_008876169.1|	-	0.0028	17.6	4.4	0.0049	16.8	4.4	1.4	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zf-Mss51	PF13824.6	gi|564289904|ref|YP_008876169.1|	-	0.053	13.6	1.9	0.12	12.5	1.9	1.6	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
HypA	PF01155.19	gi|564289904|ref|YP_008876169.1|	-	0.13	12.3	0.1	0.32	11.0	0.1	1.6	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn_Tnp_IS91	PF14319.6	gi|564289904|ref|YP_008876169.1|	-	0.35	10.9	2.8	0.79	9.8	2.8	1.5	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
UPF0547	PF10571.9	gi|564289904|ref|YP_008876169.1|	-	2.1	8.5	4.1	13	6.0	0.3	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
VAPB_antitox	PF02697.14	gi|564291335|ref|YP_008876170.1|	-	0.00085	20.1	0.0	0.00092	19.9	0.0	1.1	1	0	0	1	1	1	1	Putative	antitoxin
Y1_Tnp	PF01797.16	gi|564289905|ref|YP_008876171.1|	-	1.1e-36	125.6	0.2	1.2e-36	125.4	0.2	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
AP_endonuc_2	PF01261.24	gi|564289905|ref|YP_008876171.1|	-	0.033	13.6	0.0	0.044	13.2	0.0	1.2	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Cdc6_C	PF09079.11	gi|564289906|ref|YP_008876172.1|	-	6.6e-17	61.3	0.0	3.4e-16	59.0	0.0	2.2	2	0	0	2	2	2	1	CDC6,	C	terminal	winged	helix	domain
AAA_16	PF13191.6	gi|564289906|ref|YP_008876172.1|	-	2.8e-12	47.4	2.3	5.8e-12	46.3	0.2	2.4	2	2	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564289906|ref|YP_008876172.1|	-	6.2e-10	39.5	0.0	1.4e-09	38.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564289906|ref|YP_008876172.1|	-	1.1e-06	29.1	0.0	1.1e-05	25.9	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.14	gi|564289906|ref|YP_008876172.1|	-	0.0012	19.0	0.1	0.0025	17.9	0.0	1.5	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
NACHT	PF05729.12	gi|564289906|ref|YP_008876172.1|	-	0.0035	17.3	0.0	0.0053	16.7	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|564289906|ref|YP_008876172.1|	-	0.0069	16.1	0.0	0.016	14.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_18	PF13238.6	gi|564289906|ref|YP_008876172.1|	-	0.014	16.0	0.1	0.033	14.7	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_assoc_2	PF16193.5	gi|564289906|ref|YP_008876172.1|	-	0.019	15.3	0.1	0.061	13.7	0.1	1.8	1	0	0	1	1	1	0	AAA	C-terminal	domain
ABC_tran	PF00005.27	gi|564289906|ref|YP_008876172.1|	-	0.066	13.7	0.0	0.17	12.4	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
TniB	PF05621.11	gi|564289906|ref|YP_008876172.1|	-	0.073	12.5	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	TniB	protein
PhoH	PF02562.16	gi|564289906|ref|YP_008876172.1|	-	0.11	11.9	0.0	0.86	9.0	0.0	2.1	2	0	0	2	2	2	0	PhoH-like	protein
AAA_32	PF13654.6	gi|564289906|ref|YP_008876172.1|	-	0.11	11.2	0.4	0.38	9.5	0.3	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.14	gi|564289906|ref|YP_008876172.1|	-	0.14	12.1	1.0	2.3	8.2	0.4	2.6	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
RNA_helicase	PF00910.22	gi|564289906|ref|YP_008876172.1|	-	0.15	12.5	0.1	2.5	8.6	0.0	2.4	1	1	0	2	2	2	0	RNA	helicase
PCP_red	PF08369.10	gi|564289906|ref|YP_008876172.1|	-	0.16	12.2	0.1	0.7	10.2	0.1	2.2	1	0	0	1	1	1	0	Proto-chlorophyllide	reductase	57	kD	subunit
DEAD	PF00270.29	gi|564289906|ref|YP_008876172.1|	-	1	9.1	2.8	15	5.3	0.2	2.4	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
Glycos_transf_1	PF00534.20	gi|564289907|ref|YP_008876173.1|	-	2.5e-31	108.5	0.0	3.2e-31	108.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564289907|ref|YP_008876173.1|	-	4.6e-25	88.6	0.0	6.7e-25	88.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564289907|ref|YP_008876173.1|	-	4.7e-06	26.7	0.0	1.3e-05	25.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glycos_transf_1	PF00534.20	gi|564289908|ref|YP_008876174.1|	-	2.5e-35	121.5	0.0	4.7e-35	120.7	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564289908|ref|YP_008876174.1|	-	1.6e-29	103.1	0.0	3e-28	98.9	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564289908|ref|YP_008876174.1|	-	3.8e-23	82.3	0.1	1.1e-22	80.8	0.1	1.8	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564289908|ref|YP_008876174.1|	-	3.4e-17	63.4	0.0	6.9e-17	62.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|564289908|ref|YP_008876174.1|	-	5.6e-07	29.7	0.0	1e-06	28.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_trans_1_2	PF13524.6	gi|564289908|ref|YP_008876174.1|	-	4.9e-05	23.7	0.0	0.00022	21.5	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
DUF3492	PF11997.8	gi|564289908|ref|YP_008876174.1|	-	0.053	13.3	0.5	0.72	9.5	0.0	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3492)
Glyco_transf_5	PF08323.11	gi|564289908|ref|YP_008876174.1|	-	0.054	13.2	0.2	1.3	8.6	0.0	2.3	1	1	0	2	2	2	0	Starch	synthase	catalytic	domain
Glycos_transf_1	PF00534.20	gi|564291336|ref|YP_008876175.1|	-	2.2e-28	98.9	0.0	3.4e-28	98.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564291336|ref|YP_008876175.1|	-	6.8e-25	88.0	0.0	1e-24	87.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|564291336|ref|YP_008876175.1|	-	0.0043	17.4	0.0	0.011	16.1	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564291336|ref|YP_008876175.1|	-	0.0087	16.1	0.0	0.024	14.6	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Polysacc_synt_C	PF14667.6	gi|564291337|ref|YP_008876176.1|	-	7.2e-19	68.3	15.3	7.2e-19	68.3	15.3	1.6	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	C-terminal	domain
Polysacc_synt_3	PF13440.6	gi|564291337|ref|YP_008876176.1|	-	7.4e-09	35.2	0.3	7.4e-09	35.2	0.3	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
MatE	PF01554.18	gi|564291337|ref|YP_008876176.1|	-	3.3e-05	23.6	3.9	3.3e-05	23.6	3.9	2.2	2	1	0	2	2	2	1	MatE
MurJ	PF03023.14	gi|564291337|ref|YP_008876176.1|	-	7e-05	21.6	8.8	0.00013	20.7	8.6	1.5	1	1	0	1	1	1	1	Lipid	II	flippase	MurJ
B12D	PF06522.11	gi|564291337|ref|YP_008876176.1|	-	0.055	13.3	0.2	0.17	11.7	0.2	1.8	1	0	0	1	1	1	0	NADH-ubiquinone	reductase	complex	1	MLRQ	subunit
DUF4260	PF14079.6	gi|564291337|ref|YP_008876176.1|	-	0.2	11.6	5.0	0.49	10.4	0.6	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4260)
DUF3013	PF11217.8	gi|564291340|ref|YP_008876179.1|	-	0.09	12.6	0.0	0.1	12.5	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3013)
FAM181	PF15238.6	gi|564291340|ref|YP_008876179.1|	-	0.24	11.2	0.3	0.25	11.1	0.3	1.0	1	0	0	1	1	1	0	FAM181
Glycos_transf_1	PF00534.20	gi|564289909|ref|YP_008876182.1|	-	7.4e-26	90.7	0.0	1.1e-25	90.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564289909|ref|YP_008876182.1|	-	2.1e-24	86.5	0.0	3.4e-23	82.6	0.1	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564289909|ref|YP_008876182.1|	-	1.1e-18	67.8	0.2	1.6e-18	67.3	0.2	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564289909|ref|YP_008876182.1|	-	1.8e-12	48.0	0.1	3.4e-12	47.1	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
RAMPs	PF03787.15	gi|564289911|ref|YP_008876185.1|	-	0.14	12.2	0.0	0.17	11.9	0.0	1.4	1	1	0	1	1	1	0	RAMP	superfamily
UPF0179	PF03684.13	gi|564289913|ref|YP_008876188.1|	-	1.3e-47	161.2	0.0	1.4e-47	161.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
DDE_Tnp_1_6	PF13751.6	gi|564289913|ref|YP_008876188.1|	-	0.011	15.9	0.1	0.011	15.9	0.1	1.6	2	0	0	2	2	2	0	Transposase	DDE	domain
PrkA	PF06798.12	gi|564289915|ref|YP_008876190.1|	-	3.4e-72	243.2	14.0	4.9e-72	242.6	9.7	2.5	2	0	0	2	2	2	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.11	gi|564289915|ref|YP_008876190.1|	-	4.1e-65	220.0	0.0	6.3e-65	219.4	0.0	1.3	1	0	0	1	1	1	1	PrkA	AAA	domain
PrkA	PF06798.12	gi|564289916|ref|YP_008876191.1|	-	2.2e-40	138.9	0.0	4.5e-40	137.9	0.0	1.5	1	0	0	1	1	1	1	PrkA	serine	protein	kinase	C-terminal	domain
AAA_PrkA	PF08298.11	gi|564289916|ref|YP_008876191.1|	-	1.8e-18	66.6	0.0	3.5e-15	55.8	0.0	3.0	2	1	0	2	2	2	2	PrkA	AAA	domain
AAA_22	PF13401.6	gi|564289916|ref|YP_008876191.1|	-	0.12	12.7	0.0	0.66	10.3	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
DUF444	PF04285.12	gi|564289917|ref|YP_008876192.1|	-	2.2e-130	435.5	1.1	2.5e-130	435.3	1.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF444)
Tautomerase_2	PF14552.6	gi|564289917|ref|YP_008876192.1|	-	0.11	12.6	0.1	0.58	10.3	0.1	2.1	2	0	0	2	2	2	0	Tautomerase	enzyme
HTH_17	PF12728.7	gi|564289917|ref|YP_008876192.1|	-	0.15	12.2	0.6	1.5	9.1	0.0	2.8	4	0	0	4	4	4	0	Helix-turn-helix	domain
SpoVR	PF04293.13	gi|564289918|ref|YP_008876193.1|	-	1.3e-83	281.1	4.8	2.1e-62	211.2	0.1	3.2	3	0	0	3	3	3	3	SpoVR	like	protein
LAGLIDADG_3	PF14528.6	gi|564289918|ref|YP_008876193.1|	-	8.3e-21	74.1	1.4	6.8e-13	48.8	0.1	2.9	3	0	0	3	3	3	2	LAGLIDADG-like	domain
Intein_splicing	PF14890.6	gi|564289918|ref|YP_008876193.1|	-	4.4e-10	39.6	0.0	2.1e-09	37.4	0.0	2.2	1	1	0	1	1	1	1	Intein	splicing	domain
LacI	PF00356.21	gi|564289918|ref|YP_008876193.1|	-	0.0063	16.3	0.1	0.015	15.1	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	lacI	family
UPF0047	PF01894.17	gi|564289919|ref|YP_008876194.1|	-	1e-35	122.3	0.0	1.2e-35	122.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
AMP-binding	PF00501.28	gi|564289920|ref|YP_008876195.1|	-	8.7e-92	307.9	0.0	1.1e-91	307.6	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564289920|ref|YP_008876195.1|	-	0.053	14.5	0.1	0.29	12.2	0.1	2.2	1	1	1	2	2	2	0	AMP-binding	enzyme	C-terminal	domain
DUF2724	PF10893.8	gi|564289921|ref|YP_008876196.1|	-	0.072	12.9	0.0	0.12	12.2	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2724)
DUF2116	PF09889.9	gi|564289922|ref|YP_008876197.1|	-	0.43	10.6	3.4	6.5	6.8	0.3	2.2	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
NTP_transferase	PF00483.23	gi|564289923|ref|YP_008876198.1|	-	1.7e-39	135.9	0.0	2.6e-39	135.3	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564289923|ref|YP_008876198.1|	-	2.8e-16	60.3	0.3	4.3e-16	59.7	0.3	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|564289923|ref|YP_008876198.1|	-	2.8e-08	33.2	12.0	0.0017	18.0	0.1	4.6	4	1	1	5	5	5	3	Bacterial	transferase	hexapeptide	(six	repeats)
IspD	PF01128.19	gi|564289923|ref|YP_008876198.1|	-	0.0012	18.7	0.0	0.0021	17.9	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.6	gi|564289923|ref|YP_008876198.1|	-	0.014	15.1	6.4	1.4	8.7	0.4	3.9	4	0	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
DUF4954	PF16314.5	gi|564289923|ref|YP_008876198.1|	-	0.027	12.6	0.1	0.037	12.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4954)
GHL10	PF02638.15	gi|564289923|ref|YP_008876198.1|	-	0.12	11.4	0.0	0.18	10.9	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase-like	10
Bactofilin	PF04519.13	gi|564289923|ref|YP_008876198.1|	-	0.14	12.5	1.6	0.28	11.5	1.1	1.8	1	1	0	1	1	1	0	Polymer-forming	cytoskeletal
DUF4352	PF11611.8	gi|564289924|ref|YP_008876199.1|	-	1.5e-09	38.2	0.0	4.5e-07	30.2	0.1	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4352)
ATPase_2	PF01637.18	gi|564289925|ref|YP_008876200.1|	-	1e-26	94.3	0.0	3.9e-26	92.4	0.0	1.8	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
DUF234	PF03008.14	gi|564289925|ref|YP_008876200.1|	-	4.5e-16	59.1	0.0	9.5e-16	58.1	0.0	1.5	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.6	gi|564289925|ref|YP_008876200.1|	-	1.4e-05	25.2	0.0	2.5e-05	24.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564289925|ref|YP_008876200.1|	-	3e-05	24.3	0.0	6.5e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564289925|ref|YP_008876200.1|	-	4.6e-05	23.9	0.0	0.00013	22.4	0.0	1.8	1	0	0	1	1	1	1	AAA	ATPase	domain
HTH_5	PF01022.20	gi|564289925|ref|YP_008876200.1|	-	0.00014	21.6	0.0	0.00028	20.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|564289925|ref|YP_008876200.1|	-	0.00042	20.1	0.2	0.0012	18.6	0.2	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564289925|ref|YP_008876200.1|	-	0.00056	19.7	0.0	0.0017	18.2	0.0	1.8	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564289925|ref|YP_008876200.1|	-	0.033	13.7	0.0	0.07	12.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564289925|ref|YP_008876200.1|	-	0.044	13.7	0.0	0.12	12.3	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564289925|ref|YP_008876200.1|	-	0.045	13.8	0.1	0.22	11.6	0.1	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564289925|ref|YP_008876200.1|	-	0.088	12.8	0.1	0.2	11.6	0.1	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
RNA12	PF10443.9	gi|564289925|ref|YP_008876200.1|	-	0.13	10.9	0.0	1	8.0	0.0	2.0	1	1	0	2	2	2	0	RNA12	protein
U62_UL91	PF17442.2	gi|564289925|ref|YP_008876200.1|	-	0.17	11.9	0.0	0.61	10.1	0.0	1.9	1	0	0	1	1	1	0	Functional	domain	of	U62	and	UL91	proteins
3HCDH_N	PF02737.18	gi|564289926|ref|YP_008876201.1|	-	4.7e-66	222.1	0.2	7.6e-66	221.4	0.2	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ECH_1	PF00378.20	gi|564289926|ref|YP_008876201.1|	-	7.3e-62	208.9	0.0	1.1e-61	208.3	0.0	1.2	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
3HCDH	PF00725.22	gi|564289926|ref|YP_008876201.1|	-	1.2e-47	160.5	1.5	5.3e-31	107.1	0.0	3.6	3	0	0	3	3	3	3	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
ECH_2	PF16113.5	gi|564289926|ref|YP_008876201.1|	-	2e-36	126.2	0.2	8.9e-33	114.2	0.1	2.6	2	1	1	3	3	3	2	Enoyl-CoA	hydratase/isomerase
NAD_binding_2	PF03446.15	gi|564289926|ref|YP_008876201.1|	-	1.9e-06	28.1	0.3	7.5e-06	26.2	0.3	2.0	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|564289926|ref|YP_008876201.1|	-	0.00016	21.7	0.0	0.00033	20.7	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.17	gi|564289926|ref|YP_008876201.1|	-	0.002	18.7	3.2	0.018	15.6	3.2	2.4	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_3	PF03447.16	gi|564289926|ref|YP_008876201.1|	-	0.096	13.3	0.2	0.26	11.9	0.2	1.8	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
Acyl-CoA_dh_1	PF00441.24	gi|564289927|ref|YP_008876202.1|	-	2.6e-50	170.5	3.7	5.3e-50	169.5	3.7	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|564289927|ref|YP_008876202.1|	-	6.5e-34	117.0	0.5	1.9e-33	115.5	0.5	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|564289927|ref|YP_008876202.1|	-	7.4e-25	87.8	5.8	1.1e-24	87.2	5.8	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564289927|ref|YP_008876202.1|	-	1.3e-23	83.0	0.0	2.6e-23	82.0	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Sec8_exocyst	PF04048.14	gi|564289927|ref|YP_008876202.1|	-	0.022	14.6	0.4	0.062	13.2	0.1	1.8	2	0	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Hexapep	PF00132.24	gi|564289928|ref|YP_008876203.1|	-	4.3e-13	48.4	5.8	9.8e-07	28.3	1.0	2.8	2	1	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564289928|ref|YP_008876203.1|	-	5.3e-05	22.9	10.1	0.00055	19.6	2.2	2.9	2	1	0	2	2	2	2	Hexapeptide	repeat	of	succinyl-transferase
SATase_N	PF06426.14	gi|564289928|ref|YP_008876203.1|	-	0.0034	17.7	0.0	0.0051	17.2	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
HhH-GPD	PF00730.25	gi|564289929|ref|YP_008876204.1|	-	5.7e-11	42.8	0.0	8e-11	42.4	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH_5	PF14520.6	gi|564289929|ref|YP_008876204.1|	-	0.0068	17.0	0.0	0.032	14.8	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
HTH_33	PF13592.6	gi|564289929|ref|YP_008876204.1|	-	0.1	12.3	0.0	0.2	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
LTXXQ	PF07813.12	gi|564291345|ref|YP_008876205.1|	-	0.031	15.0	0.2	0.052	14.3	0.2	1.4	1	0	0	1	1	1	0	LTXXQ	motif	family	protein
DUF3987	PF13148.6	gi|564291345|ref|YP_008876205.1|	-	0.079	12.0	0.4	2.1	7.3	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3987)
Phage_integrase	PF00589.22	gi|564291346|ref|YP_008876206.1|	-	6.7e-40	136.7	0.0	1.7e-39	135.3	0.0	1.6	2	0	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.6	gi|564291346|ref|YP_008876206.1|	-	2.5e-08	34.2	0.0	1e-07	32.3	0.0	2.0	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|564291346|ref|YP_008876206.1|	-	7.5e-05	23.0	0.0	0.0002	21.6	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Abdominal-A	PF12407.8	gi|564291347|ref|YP_008876207.1|	-	1.6	8.4	11.3	1	9.0	7.2	2.2	2	0	0	2	2	2	0	Homeobox	protein
DUF4865	PF16157.5	gi|564291351|ref|YP_008876211.1|	-	0.011	15.7	0.3	0.016	15.2	0.2	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4865)
RimK	PF08443.11	gi|564289930|ref|YP_008876212.1|	-	4.5e-29	101.4	0.0	1.8e-28	99.4	0.0	1.8	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|564289930|ref|YP_008876212.1|	-	1.9e-12	47.6	0.0	3.7e-12	46.6	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
Zn_protease	PF05618.11	gi|564289930|ref|YP_008876212.1|	-	1.5e-10	41.1	0.1	2e-07	31.0	0.0	2.5	1	1	1	2	2	2	2	Putative	ATP-dependant	zinc	protease
GSH-S_ATP	PF02955.16	gi|564289930|ref|YP_008876212.1|	-	1.5e-08	34.3	0.0	3.4e-08	33.1	0.0	1.5	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
R2K_3	PF14243.6	gi|564289930|ref|YP_008876212.1|	-	0.00023	21.2	0.2	0.00053	20.1	0.2	1.7	1	0	0	1	1	1	1	ATP-grasp	domain,	R2K	clade	family	3
gag-asp_proteas	PF13975.6	gi|564289930|ref|YP_008876212.1|	-	0.00034	21.1	0.3	0.00083	19.9	0.3	1.7	1	0	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
ATPgrasp_YheCD	PF14398.6	gi|564289930|ref|YP_008876212.1|	-	0.026	13.8	0.0	0.073	12.3	0.0	1.7	1	1	0	1	1	1	0	YheC/D	like	ATP-grasp
Asp_protease_2	PF13650.6	gi|564289930|ref|YP_008876212.1|	-	0.063	13.9	0.9	0.19	12.4	0.9	1.9	1	0	0	1	1	1	0	Aspartyl	protease
AstE_AspA	PF04952.14	gi|564289931|ref|YP_008876213.1|	-	3.7e-66	223.2	0.0	4.6e-66	222.8	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
Sdh_cyt	PF01127.22	gi|564289932|ref|YP_008876214.1|	-	6.6e-26	90.7	3.7	7.5e-26	90.5	3.7	1.0	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Sdh_cyt	PF01127.22	gi|564289933|ref|YP_008876215.1|	-	1.1e-10	41.6	5.3	1.3e-10	41.3	5.3	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Fer2_3	PF13085.6	gi|564289934|ref|YP_008876216.1|	-	9.8e-33	112.4	0.2	3.6e-32	110.6	0.0	2.0	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.6	gi|564289934|ref|YP_008876216.1|	-	1.7e-12	47.6	4.0	1.7e-12	47.6	4.0	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564289934|ref|YP_008876216.1|	-	9.4e-09	35.3	4.4	2.3e-08	34.0	4.4	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564289934|ref|YP_008876216.1|	-	4e-06	27.3	5.1	4.7e-06	27.1	3.0	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|564289934|ref|YP_008876216.1|	-	3.2e-05	24.4	4.4	8.6e-05	23.0	4.4	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564289934|ref|YP_008876216.1|	-	0.00035	20.7	8.7	0.0027	17.8	8.3	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564289934|ref|YP_008876216.1|	-	0.016	16.1	14.5	0.026	15.4	1.8	3.4	3	0	0	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|564289934|ref|YP_008876216.1|	-	0.03	14.4	2.3	0.23	11.6	0.4	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|564289934|ref|YP_008876216.1|	-	0.48	11.1	8.7	0.94	10.1	2.4	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|564289934|ref|YP_008876216.1|	-	1.6	9.0	12.4	1.8	8.8	1.4	2.8	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564289934|ref|YP_008876216.1|	-	1.8	8.5	9.8	6.2	6.8	3.2	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|564289934|ref|YP_008876216.1|	-	1.9	8.3	14.3	0.53	10.1	0.5	2.8	2	1	1	3	3	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.7	gi|564289934|ref|YP_008876216.1|	-	3.7	8.7	11.9	2.1	9.5	0.4	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564289934|ref|YP_008876216.1|	-	4.7	7.4	7.6	8.1	6.7	2.2	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
PAS_3	PF08447.12	gi|564289935|ref|YP_008876217.1|	-	4.6e-35	119.8	0.8	1.3e-16	60.6	0.1	2.4	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|564289935|ref|YP_008876217.1|	-	1.3e-16	60.7	0.1	9.2e-08	32.3	0.0	2.6	3	0	0	3	3	3	2	PAS	domain
PAS	PF00989.25	gi|564289935|ref|YP_008876217.1|	-	3.6e-16	59.2	0.3	3.8e-07	30.1	0.0	2.7	2	1	0	2	2	2	2	PAS	fold
PAS_4	PF08448.10	gi|564289935|ref|YP_008876217.1|	-	7.9e-14	51.8	3.4	1.1e-07	32.1	0.3	2.6	2	0	0	2	2	2	2	PAS	fold
PAS_11	PF14598.6	gi|564289935|ref|YP_008876217.1|	-	5.6e-12	45.8	0.0	0.00014	22.0	0.0	2.4	2	0	0	2	2	2	2	PAS	domain
HATPase_c	PF02518.26	gi|564289935|ref|YP_008876217.1|	-	1.1e-11	45.2	0.0	2.2e-11	44.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564289935|ref|YP_008876217.1|	-	4.4e-10	39.4	0.4	9.7e-10	38.4	0.4	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|564289935|ref|YP_008876217.1|	-	1.1e-07	31.7	0.5	0.0038	17.2	0.0	3.2	3	0	0	3	3	3	2	PAS	domain
HATPase_c_2	PF13581.6	gi|564289935|ref|YP_008876217.1|	-	0.0003	20.8	0.4	0.00076	19.4	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
FAD_binding_2	PF00890.24	gi|564289936|ref|YP_008876218.1|	-	1.4e-120	403.2	6.8	1.4e-120	403.2	6.8	1.4	2	0	0	2	2	2	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.20	gi|564289936|ref|YP_008876218.1|	-	2.6e-37	127.7	0.9	4.4e-37	126.9	0.9	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.14	gi|564289936|ref|YP_008876218.1|	-	1.8e-08	34.0	1.3	0.0001	21.6	0.3	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|564289936|ref|YP_008876218.1|	-	5.5e-05	22.0	0.0	0.00012	20.9	0.0	1.6	1	0	0	1	1	1	1	HI0933-like	protein
GIDA	PF01134.22	gi|564289936|ref|YP_008876218.1|	-	0.00017	20.8	3.8	0.00051	19.2	3.6	1.9	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
DAO	PF01266.24	gi|564289936|ref|YP_008876218.1|	-	0.00058	19.6	7.8	0.009	15.6	7.3	2.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.7	gi|564289936|ref|YP_008876218.1|	-	0.00084	18.8	3.9	0.00084	18.8	3.9	2.0	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564289936|ref|YP_008876218.1|	-	0.007	15.6	1.6	0.05	12.8	0.4	2.5	3	0	0	3	3	3	1	Thi4	family
FAD_binding_3	PF01494.19	gi|564289936|ref|YP_008876218.1|	-	0.019	14.2	1.0	0.019	14.2	1.0	1.9	2	0	0	2	2	2	0	FAD	binding	domain
Pyr_redox_3	PF13738.6	gi|564289936|ref|YP_008876218.1|	-	0.031	13.5	0.6	0.14	11.3	0.3	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|564289936|ref|YP_008876218.1|	-	0.18	11.1	1.5	0.38	10.0	1.5	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Cupin_2	PF07883.11	gi|564289937|ref|YP_008876219.1|	-	3.9e-11	42.5	0.9	5.2e-11	42.1	0.9	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|564289937|ref|YP_008876219.1|	-	2.9e-06	26.9	0.1	3.8e-06	26.5	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding_2	PF14525.6	gi|564289937|ref|YP_008876219.1|	-	5.7e-05	22.9	0.1	7e-05	22.6	0.1	1.0	1	0	0	1	1	1	1	AraC-binding-like	domain
AraC_binding	PF02311.19	gi|564289937|ref|YP_008876219.1|	-	0.0064	16.4	0.0	0.0078	16.1	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
DUF2917	PF11142.8	gi|564289937|ref|YP_008876219.1|	-	0.024	14.0	0.1	0.053	12.9	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2917)
EutQ	PF06249.12	gi|564289937|ref|YP_008876219.1|	-	0.041	13.6	0.0	0.049	13.4	0.0	1.2	1	0	0	1	1	1	0	Ethanolamine	utilisation	protein	EutQ
KduI	PF04962.12	gi|564289937|ref|YP_008876219.1|	-	0.052	12.9	0.1	0.091	12.1	0.1	1.5	1	1	0	1	1	1	0	KduI/IolB	family
Pirin_C_2	PF17954.1	gi|564289937|ref|YP_008876219.1|	-	0.07	13.3	0.0	0.097	12.9	0.0	1.1	1	0	0	1	1	1	0	Quercetinase	C-terminal	cupin	domain
Prok-RING_1	PF14446.6	gi|564289938|ref|YP_008876220.1|	-	0.071	13.1	0.5	0.12	12.3	0.5	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Rad50_zn_hook	PF04423.14	gi|564289938|ref|YP_008876220.1|	-	0.13	12.1	0.4	0.6	10.0	0.4	1.9	1	1	0	1	1	1	0	Rad50	zinc	hook	motif
DBI_PRT	PF02277.17	gi|564289939|ref|YP_008876221.1|	-	4.1e-05	23.0	2.0	4.1e-05	23.0	2.0	1.7	2	0	0	2	2	2	1	Phosphoribosyltransferase
GATase_3	PF07685.14	gi|564289940|ref|YP_008876222.1|	-	9.9e-34	116.7	0.0	1.3e-33	116.3	0.0	1.1	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|564289940|ref|YP_008876222.1|	-	9.4e-09	35.4	0.0	1.6e-08	34.6	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|564289940|ref|YP_008876222.1|	-	2.2e-08	34.2	0.0	0.00023	21.1	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
SNO	PF01174.19	gi|564289940|ref|YP_008876222.1|	-	0.018	14.9	0.0	0.03	14.2	0.0	1.3	1	0	0	1	1	1	0	SNO	glutamine	amidotransferase	family
Peptidase_S51	PF03575.17	gi|564289940|ref|YP_008876222.1|	-	0.12	12.0	0.0	0.28	10.8	0.0	1.6	1	0	0	1	1	1	0	Peptidase	family	S51
DisA_N	PF02457.16	gi|564289941|ref|YP_008876223.1|	-	9.8e-21	73.5	0.0	1.5e-20	72.9	0.0	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
PK_C	PF02887.16	gi|564289941|ref|YP_008876223.1|	-	0.025	14.8	0.0	0.3	11.3	0.0	2.3	2	0	0	2	2	2	0	Pyruvate	kinase,	alpha/beta	domain
MS_channel	PF00924.18	gi|564289942|ref|YP_008876224.1|	-	1.8e-19	70.1	1.7	3.7e-19	69.1	1.7	1.5	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
TM_helix	PF05552.12	gi|564289942|ref|YP_008876224.1|	-	0.014	15.4	7.2	0.02	14.9	0.1	3.2	3	0	0	3	3	3	0	Conserved	TM	helix
Fimbrial_PilY2	PF14481.6	gi|564289942|ref|YP_008876224.1|	-	0.14	11.8	0.0	0.3	10.7	0.0	1.5	1	0	0	1	1	1	0	Type	4	fimbrial	biogenesis	protein	PilY2
Hexapep	PF00132.24	gi|564289943|ref|YP_008876225.1|	-	8.3e-08	31.7	4.8	1.2e-07	31.1	0.4	2.7	3	0	0	3	3	3	1	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564289943|ref|YP_008876225.1|	-	1.7e-07	30.9	3.1	9.7e-07	28.4	0.7	2.7	3	0	0	3	3	3	1	Hexapeptide	repeat	of	succinyl-transferase
GARS_A	PF01071.19	gi|564289944|ref|YP_008876226.1|	-	5e-53	179.8	0.0	1.2e-52	178.6	0.0	1.6	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.15	gi|564289944|ref|YP_008876226.1|	-	7.8e-22	77.9	0.1	1.5e-21	76.9	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.16	gi|564289944|ref|YP_008876226.1|	-	1.1e-11	44.9	0.9	2.4e-11	43.7	0.2	2.1	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_3	PF02655.14	gi|564289944|ref|YP_008876226.1|	-	2.1e-05	24.6	0.0	4.2e-05	23.7	0.0	1.4	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|564289944|ref|YP_008876226.1|	-	0.015	14.6	0.0	0.047	12.9	0.0	1.7	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
CPSase_L_D2	PF02786.17	gi|564289944|ref|YP_008876226.1|	-	0.024	14.1	0.0	0.042	13.3	0.0	1.4	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_4	PF13535.6	gi|564289944|ref|YP_008876226.1|	-	0.075	12.6	0.0	0.2	11.2	0.0	1.7	1	0	0	1	1	1	0	ATP-grasp	domain
MMPL	PF03176.15	gi|564291352|ref|YP_008876227.1|	-	2.6	6.9	6.9	3.5	6.5	6.9	1.1	1	0	0	1	1	1	0	MMPL	family
Thioredox_DsbH	PF03190.15	gi|564289945|ref|YP_008876228.1|	-	6.7e-73	244.0	0.1	1.2e-72	243.2	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.6	gi|564289945|ref|YP_008876228.1|	-	2.5e-09	37.2	0.0	7.9e-09	35.6	0.0	1.9	1	0	0	1	1	1	1	Thioredoxin-like
GlcNAc_2-epim	PF07221.11	gi|564289945|ref|YP_008876228.1|	-	0.00023	20.5	0.2	0.052	12.8	0.0	2.7	2	1	0	2	2	2	2	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
Thioredoxin	PF00085.20	gi|564289946|ref|YP_008876229.1|	-	0.0011	19.0	0.0	0.0018	18.2	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
AhpC-TSA	PF00578.21	gi|564289946|ref|YP_008876229.1|	-	0.081	12.9	0.0	0.11	12.4	0.0	1.4	1	1	0	1	1	1	0	AhpC/TSA	family
NS3	PF17530.2	gi|564289946|ref|YP_008876229.1|	-	0.11	12.1	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Non-structural	protein	NS3
DUF4604	PF15377.6	gi|564289946|ref|YP_008876229.1|	-	0.16	12.4	0.2	0.23	11.9	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4604)
Glyco_hydro_3_C	PF01915.22	gi|564289947|ref|YP_008876230.1|	-	1.4e-56	191.7	0.0	7.7e-56	189.3	0.0	2.2	2	1	0	2	2	2	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|564289947|ref|YP_008876230.1|	-	3.2e-53	181.2	0.0	1.3e-52	179.1	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|564289947|ref|YP_008876230.1|	-	3.4e-21	75.1	0.1	8.7e-21	73.8	0.1	1.8	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
HisKA_7TM	PF16927.5	gi|564289948|ref|YP_008876231.1|	-	1.1e-42	146.6	19.1	1.4e-42	146.2	19.1	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|564289948|ref|YP_008876231.1|	-	1e-15	58.2	0.2	2.3e-15	57.1	0.2	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564289948|ref|YP_008876231.1|	-	2.1e-10	40.5	0.5	4.5e-10	39.4	0.5	1.6	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|564289948|ref|YP_008876231.1|	-	1.1e-08	35.3	0.1	3.2e-08	33.8	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564289948|ref|YP_008876231.1|	-	6.3e-07	29.3	0.0	1.9e-06	27.8	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS_9	PF13426.7	gi|564289948|ref|YP_008876231.1|	-	1e-06	28.9	0.0	2.9e-06	27.5	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|564289948|ref|YP_008876231.1|	-	7.2e-06	26.0	0.0	1.3e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
HATPase_c_2	PF13581.6	gi|564289948|ref|YP_008876231.1|	-	0.0015	18.5	0.1	0.0032	17.4	0.1	1.6	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
SpoVT_C	PF15714.5	gi|564289948|ref|YP_008876231.1|	-	0.011	15.8	0.0	0.02	14.9	0.0	1.3	1	0	0	1	1	1	0	Stage	V	sporulation	protein	T	C-terminal,	transcription	factor
Hemerythrin	PF01814.23	gi|564289948|ref|YP_008876231.1|	-	1.4	9.6	8.7	5.3	7.7	8.7	1.9	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
Lactamase_B	PF00753.27	gi|564289951|ref|YP_008876234.1|	-	1e-18	68.1	14.0	1.9e-17	63.9	13.8	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|564289951|ref|YP_008876234.1|	-	3.2e-06	26.8	3.9	4.8e-06	26.2	3.9	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|564289951|ref|YP_008876234.1|	-	0.055	13.4	2.6	0.07	13.0	2.6	1.4	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Lactamase_B_6	PF16661.5	gi|564289951|ref|YP_008876234.1|	-	0.11	11.9	0.1	0.15	11.4	0.1	1.2	1	0	0	1	1	1	0	Metallo-beta-lactamase	superfamily	domain
Osmo_CC	PF08946.10	gi|564289951|ref|YP_008876234.1|	-	7.8	6.8	6.8	24	5.3	0.0	3.4	3	1	1	4	4	4	0	Osmosensory	transporter	coiled	coil
Response_reg	PF00072.24	gi|564289952|ref|YP_008876235.1|	-	2.3e-21	76.1	0.1	4.4e-21	75.1	0.1	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HalX	PF08663.10	gi|564289952|ref|YP_008876235.1|	-	3.7e-21	75.2	9.1	3.7e-21	75.2	9.1	2.3	2	1	1	3	3	3	1	HalX	domain
GAT	PF03127.14	gi|564289952|ref|YP_008876235.1|	-	0.027	14.8	0.9	0.078	13.3	0.9	1.8	1	1	0	1	1	1	0	GAT	domain
RapH_N	PF18801.1	gi|564289952|ref|YP_008876235.1|	-	0.029	14.4	0.8	0.17	12.0	0.3	2.2	2	0	0	2	2	2	0	response	regulator	aspartate	phosphatase	H,	N	terminal
ArnB_C	PF18677.1	gi|564289952|ref|YP_008876235.1|	-	0.079	13.1	1.5	0.17	12.0	1.5	1.6	1	1	0	1	1	1	0	Archaellum	regulatory	network	B,	C-terminal	domain
MapZ_EC1	PF18041.1	gi|564289952|ref|YP_008876235.1|	-	0.29	11.4	2.8	1.8	8.8	0.7	2.2	1	1	1	2	2	2	0	MapZ	extracellular	domain	1
Pup	PF05639.11	gi|564289952|ref|YP_008876235.1|	-	0.77	10.7	5.5	15	6.5	0.0	3.3	3	0	0	3	3	3	0	Pup-like	protein
ATPase	PF06745.13	gi|564289953|ref|YP_008876236.1|	-	1.3e-05	24.6	0.0	2.6e-05	23.7	0.0	1.4	1	1	0	1	1	1	1	KaiC
TPP_enzyme_N	PF02776.18	gi|564289953|ref|YP_008876236.1|	-	0.0021	17.7	0.0	0.0033	17.1	0.0	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Thy1	PF02511.15	gi|564289954|ref|YP_008876237.1|	-	3.5e-62	209.5	0.0	4e-62	209.4	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
eIF-5_eIF-2B	PF01873.17	gi|564289956|ref|YP_008876239.1|	-	1.8e-37	127.8	0.0	2.1e-37	127.6	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
Nuclease_act	PF08133.11	gi|564289956|ref|YP_008876239.1|	-	0.16	12.2	0.0	0.3	11.3	0.0	1.4	1	0	0	1	1	1	0	Anticodon	nuclease	activator	family
DNA_RNApol_7kD	PF03604.13	gi|564289956|ref|YP_008876239.1|	-	0.37	10.5	3.0	2.7	7.7	3.3	2.0	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
PhnA_Zn_Ribbon	PF08274.12	gi|564289957|ref|YP_008876240.1|	-	6.5e-05	22.8	0.7	0.14	12.1	0.3	2.2	2	0	0	2	2	2	2	PhnA	Zinc-Ribbon
HypA	PF01155.19	gi|564289957|ref|YP_008876240.1|	-	0.00088	19.3	0.2	0.00093	19.2	0.2	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF1610	PF07754.11	gi|564289957|ref|YP_008876240.1|	-	0.0017	18.2	4.3	0.26	11.3	0.8	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
Zn_Tnp_IS1	PF03811.13	gi|564289957|ref|YP_008876240.1|	-	0.0024	17.6	0.6	0.32	10.7	0.4	2.2	2	0	0	2	2	2	1	InsA	N-terminal	domain
zinc_ribbon_10	PF10058.9	gi|564289957|ref|YP_008876240.1|	-	0.0062	16.2	0.3	0.0084	15.8	0.3	1.3	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
zinc_ribbon_4	PF13717.6	gi|564289957|ref|YP_008876240.1|	-	0.0078	16.1	2.7	0.29	11.1	0.2	2.1	1	1	0	2	2	2	1	zinc-ribbon	domain
Elf1	PF05129.13	gi|564289957|ref|YP_008876240.1|	-	0.0089	16.1	1.5	0.018	15.1	0.1	1.8	1	1	1	2	2	2	1	Transcription	elongation	factor	Elf1	like
zinc-ribbons_6	PF07191.12	gi|564289957|ref|YP_008876240.1|	-	0.0098	15.9	1.0	0.016	15.2	1.1	1.4	1	1	0	1	1	1	1	zinc-ribbons
DUF4379	PF14311.6	gi|564289957|ref|YP_008876240.1|	-	0.011	16.1	2.2	0.093	13.1	1.9	2.0	1	1	1	2	2	2	0	Probable	Zinc-ribbon	domain
zf-RING_4	PF14570.6	gi|564289957|ref|YP_008876240.1|	-	0.013	15.2	1.5	3.5	7.5	0.1	2.2	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
TackOD1	PF18551.1	gi|564289957|ref|YP_008876240.1|	-	0.015	15.0	0.4	0.017	14.8	0.4	1.1	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
zf-LITAF-like	PF10601.9	gi|564289957|ref|YP_008876240.1|	-	0.019	15.2	0.9	1	9.6	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
UPF0515	PF15135.6	gi|564289957|ref|YP_008876240.1|	-	0.023	14.1	0.3	0.025	13.9	0.3	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	UPF0515
Zn_Tnp_IS1595	PF12760.7	gi|564289957|ref|YP_008876240.1|	-	0.023	14.7	4.2	0.19	11.7	0.8	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf_Rg	PF17915.1	gi|564289957|ref|YP_008876240.1|	-	0.024	14.1	0.2	4.5	6.8	0.1	2.3	2	0	0	2	2	2	0	Reverse	gyrase	zinc	finger
zf-3CxxC	PF13695.6	gi|564289957|ref|YP_008876240.1|	-	0.03	14.8	0.9	0.42	11.1	0.0	2.0	1	1	1	2	2	2	0	Zinc-binding	domain
OrfB_Zn_ribbon	PF07282.11	gi|564289957|ref|YP_008876240.1|	-	0.031	14.2	1.0	0.043	13.7	1.0	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.12	gi|564289957|ref|YP_008876240.1|	-	0.033	13.7	0.9	1.9	8.1	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
TFIIS_C	PF01096.18	gi|564289957|ref|YP_008876240.1|	-	0.05	13.5	1.6	3.6	7.5	0.2	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Sgf11	PF08209.11	gi|564289957|ref|YP_008876240.1|	-	0.053	13.1	1.6	1.3	8.7	0.3	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-ribbon_3	PF13248.6	gi|564289957|ref|YP_008876240.1|	-	0.058	12.8	2.1	2.1	7.9	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|564289957|ref|YP_008876240.1|	-	0.059	13.6	1.7	7.5	6.9	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon
Dehyd-heme_bind	PF09098.10	gi|564289957|ref|YP_008876240.1|	-	0.099	12.2	0.1	0.099	12.2	0.1	1.1	1	0	0	1	1	1	0	Quinohemoprotein	amine	dehydrogenase	A,	alpha	subunit,	haem	binding
Cys_rich_KTR	PF14205.6	gi|564289957|ref|YP_008876240.1|	-	0.1	12.4	1.6	6.4	6.7	0.1	2.2	2	0	0	2	2	2	0	Cysteine-rich	KTR
Anti-TRAP	PF15777.5	gi|564289957|ref|YP_008876240.1|	-	0.14	12.2	1.9	0.26	11.3	2.0	1.4	1	1	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
CpXC	PF14353.6	gi|564289957|ref|YP_008876240.1|	-	0.31	11.1	2.5	1.7	8.7	0.2	2.0	1	1	1	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.10	gi|564289957|ref|YP_008876240.1|	-	0.51	10.5	4.4	1.6	8.9	4.3	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|564289957|ref|YP_008876240.1|	-	0.63	9.4	5.1	2.4	7.6	5.4	1.8	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
Rubredoxin	PF00301.20	gi|564289957|ref|YP_008876240.1|	-	0.72	9.9	6.5	0.59	10.2	0.5	2.2	1	1	1	2	2	2	0	Rubredoxin
Rubredoxin_2	PF18073.1	gi|564289957|ref|YP_008876240.1|	-	3.4	7.5	8.5	9.1	6.1	1.7	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
TFIIB	PF00382.19	gi|564289958|ref|YP_008876241.1|	-	5.1e-34	116.1	0.0	9.3e-16	57.6	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564289958|ref|YP_008876241.1|	-	1e-16	60.1	5.2	1.8e-16	59.4	5.2	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|564289958|ref|YP_008876241.1|	-	5.6e-05	23.2	0.0	0.018	15.1	0.0	2.3	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
A2L_zn_ribbon	PF08792.10	gi|564289958|ref|YP_008876241.1|	-	0.014	15.1	1.2	0.023	14.4	1.2	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
Sigma70_r4	PF04545.16	gi|564289958|ref|YP_008876241.1|	-	0.014	14.9	0.1	0.076	12.5	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
Anti-TRAP	PF15777.5	gi|564289958|ref|YP_008876241.1|	-	0.049	13.6	0.6	0.092	12.7	0.6	1.4	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HTH_Tnp_ISL3	PF13542.6	gi|564289958|ref|YP_008876241.1|	-	0.1	12.0	0.0	0.81	9.1	0.1	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
zf-RRN7	PF11781.8	gi|564289958|ref|YP_008876241.1|	-	0.15	11.8	1.6	0.22	11.2	1.6	1.3	1	0	0	1	1	1	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
Zn-ribbon_8	PF09723.10	gi|564289958|ref|YP_008876241.1|	-	3.1	8.0	5.5	8.4	6.6	0.8	2.4	1	1	2	3	3	3	0	Zinc	ribbon	domain
HILPDA	PF15220.6	gi|564289959|ref|YP_008876242.1|	-	1.8	8.7	5.7	10	6.3	0.4	2.4	2	1	0	2	2	2	0	Hypoxia-inducible	lipid	droplet-associated
HTH_5	PF01022.20	gi|564289960|ref|YP_008876243.1|	-	3.3e-12	46.1	0.0	4.3e-12	45.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|564289960|ref|YP_008876243.1|	-	7.9e-10	38.7	0.0	1.1e-09	38.3	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.6	gi|564289960|ref|YP_008876243.1|	-	2.4e-07	30.6	0.0	3.1e-07	30.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|564289960|ref|YP_008876243.1|	-	0.00033	20.5	0.0	0.00044	20.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564289960|ref|YP_008876243.1|	-	0.00041	20.2	0.0	0.00047	20.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564289960|ref|YP_008876243.1|	-	0.00045	19.7	0.0	0.0011	18.5	0.0	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
DprA_WH	PF17782.1	gi|564289960|ref|YP_008876243.1|	-	0.0045	17.1	0.0	0.0068	16.5	0.0	1.2	1	0	0	1	1	1	1	DprA	winged	helix	domain
HTH_11	PF08279.12	gi|564289960|ref|YP_008876243.1|	-	0.012	15.6	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
Rrf2	PF02082.20	gi|564289960|ref|YP_008876243.1|	-	0.029	14.7	0.0	0.033	14.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
TFIIE_alpha	PF02002.17	gi|564289960|ref|YP_008876243.1|	-	0.031	14.1	0.0	0.036	13.9	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_IclR	PF09339.10	gi|564289960|ref|YP_008876243.1|	-	0.031	14.1	0.0	0.046	13.5	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
DUF4364	PF14277.6	gi|564289960|ref|YP_008876243.1|	-	0.033	13.9	0.0	0.041	13.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
HTH_28	PF13518.6	gi|564289960|ref|YP_008876243.1|	-	0.036	14.2	0.0	0.066	13.3	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|564289960|ref|YP_008876243.1|	-	0.066	13.2	0.0	0.11	12.5	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn	helix
HTH_Tnp_ISL3	PF13542.6	gi|564289960|ref|YP_008876243.1|	-	0.14	11.6	0.0	0.9	9.0	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF2089	PF09862.9	gi|564289960|ref|YP_008876243.1|	-	0.2	11.7	0.0	0.22	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
Fasciclin	PF02469.22	gi|564289961|ref|YP_008876244.1|	-	2.9e-24	85.7	0.0	3.5e-24	85.5	0.0	1.1	1	0	0	1	1	1	1	Fasciclin	domain
UCR_Fe-S_N	PF10399.9	gi|564289961|ref|YP_008876244.1|	-	5.1	6.5	8.7	16	5.0	8.7	1.9	1	1	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
DUF357	PF04010.13	gi|564289962|ref|YP_008876245.1|	-	1.1e-30	105.5	0.2	1.3e-30	105.3	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
Cas_Cas1	PF01867.16	gi|564289962|ref|YP_008876245.1|	-	0.14	11.2	0.0	0.18	11.0	0.0	1.1	1	0	0	1	1	1	0	CRISPR	associated	protein	Cas1
Pyr_redox_2	PF07992.14	gi|564289963|ref|YP_008876246.1|	-	7.5e-42	143.6	0.6	9.1e-42	143.3	0.6	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564289963|ref|YP_008876246.1|	-	1.3e-15	57.5	0.0	1.3e-11	44.3	0.0	2.4	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564289963|ref|YP_008876246.1|	-	1.8e-14	54.1	0.2	7e-13	48.9	0.0	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564289963|ref|YP_008876246.1|	-	1.2e-05	24.6	1.6	0.00081	18.6	0.0	3.0	2	1	0	3	3	3	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|564289963|ref|YP_008876246.1|	-	3.6e-05	22.7	0.0	0.027	13.2	0.0	2.7	3	0	0	3	3	3	2	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|564289963|ref|YP_008876246.1|	-	0.00014	22.0	0.0	0.0016	18.6	0.0	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.6	gi|564289963|ref|YP_008876246.1|	-	0.0013	19.2	0.0	0.02	15.3	0.0	2.3	2	0	0	2	2	2	1	Putative	NAD(P)-binding
FAD_oxidored	PF12831.7	gi|564289963|ref|YP_008876246.1|	-	0.0023	17.4	0.1	0.0066	15.9	0.0	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
DAO	PF01266.24	gi|564289963|ref|YP_008876246.1|	-	0.0028	17.3	0.4	1.2	8.6	0.1	2.6	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|564289963|ref|YP_008876246.1|	-	0.044	12.9	0.7	0.84	8.6	0.1	3.0	4	0	0	4	4	4	0	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|564289963|ref|YP_008876246.1|	-	0.094	11.9	0.0	0.8	8.9	0.0	2.2	2	0	0	2	2	2	0	Thi4	family
RibD_C	PF01872.17	gi|564289965|ref|YP_008876248.1|	-	4.4e-51	173.6	0.0	4.9e-51	173.4	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
Tir_receptor_N	PF07490.11	gi|564289965|ref|YP_008876248.1|	-	0.02	14.7	0.1	0.027	14.3	0.1	1.1	1	0	0	1	1	1	0	Translocated	intimin	receptor	(Tir)	N-terminus
tRNA_anti-codon	PF01336.25	gi|564289967|ref|YP_008876250.1|	-	4.1e-05	23.5	3.0	0.37	10.8	0.0	4.1	4	0	0	4	4	4	3	OB-fold	nucleic	acid	binding	domain
Prot_ATP_OB_N	PF17758.1	gi|564289967|ref|YP_008876250.1|	-	0.016	14.8	1.7	5.5	6.7	0.1	3.9	4	0	0	4	4	4	0	Proteasomal	ATPase	OB	N-terminal	domain
zf-RING_7	PF02591.15	gi|564289967|ref|YP_008876250.1|	-	0.026	14.7	0.4	0.066	13.4	0.4	1.7	1	0	0	1	1	1	0	C4-type	zinc	ribbon	domain
Metallophos_2	PF12850.7	gi|564289969|ref|YP_008876252.1|	-	1.2e-07	32.1	0.3	1.8e-07	31.5	0.3	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564289969|ref|YP_008876252.1|	-	1.5e-05	25.6	1.8	0.00021	21.9	0.0	2.1	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
FBPase	PF00316.20	gi|564289970|ref|YP_008876253.1|	-	3.7e-26	91.8	0.0	5.9e-26	91.1	0.0	1.3	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase,	N-terminal	domain
Inositol_P	PF00459.25	gi|564289970|ref|YP_008876253.1|	-	0.0026	17.3	0.1	0.012	15.2	0.1	1.9	1	1	0	1	1	1	1	Inositol	monophosphatase	family
DEAD_assoc	PF08494.11	gi|564289971|ref|YP_008876254.1|	-	9.7e-33	113.6	0.4	3.2e-32	111.9	0.0	2.1	2	0	0	2	2	2	1	DEAD/H	associated
DEAD	PF00270.29	gi|564289971|ref|YP_008876254.1|	-	1.1e-30	106.7	0.0	3.9e-30	104.9	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.31	gi|564289971|ref|YP_008876254.1|	-	4.1e-21	75.4	0.0	2e-20	73.2	0.0	2.0	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.15	gi|564289971|ref|YP_008876254.1|	-	1.5e-10	41.4	0.0	5.2e-10	39.6	0.0	1.8	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.6	gi|564289971|ref|YP_008876254.1|	-	0.0016	18.0	0.4	0.0058	16.2	0.4	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|564289971|ref|YP_008876254.1|	-	0.0034	17.7	0.0	0.022	15.1	0.1	2.2	2	1	0	2	2	2	1	AAA	domain
HypA	PF01155.19	gi|564289971|ref|YP_008876254.1|	-	0.018	15.0	0.7	0.061	13.4	0.3	2.0	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
SNF2_N	PF00176.23	gi|564289971|ref|YP_008876254.1|	-	0.019	13.7	0.0	0.053	12.2	0.0	1.6	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
Zn-ribbon_8	PF09723.10	gi|564289971|ref|YP_008876254.1|	-	0.087	13.0	0.8	0.18	11.9	0.8	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
AAA_22	PF13401.6	gi|564289971|ref|YP_008876254.1|	-	0.15	12.3	0.9	2.4	8.4	0.9	2.7	1	1	0	1	1	1	0	AAA	domain
LPD22	PF18834.1	gi|564289971|ref|YP_008876254.1|	-	1.7	8.9	5.2	2.4	8.4	0.0	3.1	4	0	0	4	4	4	0	Large	polyvalent	protein	associated	domain	22
Spo0M	PF07070.11	gi|564289972|ref|YP_008876255.1|	-	7.9e-70	234.7	0.5	9.3e-70	234.4	0.5	1.0	1	0	0	1	1	1	1	SpoOM	protein
Arrestin_C	PF02752.22	gi|564289972|ref|YP_008876255.1|	-	0.1	13.1	0.0	0.16	12.4	0.0	1.3	1	0	0	1	1	1	0	Arrestin	(or	S-antigen),	C-terminal	domain
PAS_4	PF08448.10	gi|564289973|ref|YP_008876256.1|	-	2.6e-30	104.9	1.3	3.7e-15	56.1	0.2	2.4	2	0	0	2	2	2	2	PAS	fold
Response_reg	PF00072.24	gi|564289973|ref|YP_008876256.1|	-	1.4e-21	76.7	0.0	3.1e-21	75.6	0.0	1.6	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|564289973|ref|YP_008876256.1|	-	1e-15	57.8	0.0	1.7e-06	28.3	0.0	2.4	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.25	gi|564289973|ref|YP_008876256.1|	-	4.2e-14	52.5	0.1	9.7e-08	32.0	0.0	2.5	2	0	0	2	2	2	2	PAS	fold
PAS_8	PF13188.7	gi|564289973|ref|YP_008876256.1|	-	1.6e-12	47.1	0.0	4.4e-05	23.4	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
PAS_7	PF12860.7	gi|564289973|ref|YP_008876256.1|	-	4.3e-06	26.9	0.0	0.0066	16.6	0.1	2.8	2	1	0	2	2	2	2	PAS	fold
OKR_DC_1_N	PF03709.15	gi|564289973|ref|YP_008876256.1|	-	0.0011	19.2	0.0	0.004	17.4	0.0	2.0	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS_3	PF08447.12	gi|564289973|ref|YP_008876256.1|	-	0.0016	18.7	0.0	0.23	11.8	0.0	2.4	2	0	0	2	2	2	1	PAS	fold
zf-ribbon_3	PF13248.6	gi|564289974|ref|YP_008876257.1|	-	2.8e-06	26.5	2.9	4.7e-06	25.8	2.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564289974|ref|YP_008876257.1|	-	9.6e-05	22.0	3.1	0.00015	21.3	3.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564289974|ref|YP_008876257.1|	-	0.00072	19.5	0.7	0.0011	18.9	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Lipase_3	PF01764.25	gi|564289974|ref|YP_008876257.1|	-	0.0098	15.8	0.0	0.014	15.2	0.0	1.2	1	0	0	1	1	1	1	Lipase	(class	3)
zf_UBZ	PF18439.1	gi|564289974|ref|YP_008876257.1|	-	0.083	12.5	2.0	6	6.6	0.6	2.2	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2HC5	PF06221.13	gi|564289974|ref|YP_008876257.1|	-	0.2	11.7	1.6	0.52	10.3	1.6	1.6	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
DUF35_N	PF12172.8	gi|564289974|ref|YP_008876257.1|	-	0.21	11.5	3.3	0.38	10.7	3.3	1.4	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Wzy_C_2	PF11846.8	gi|564289974|ref|YP_008876257.1|	-	0.28	11.1	1.1	0.54	10.2	1.1	1.4	1	0	0	1	1	1	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
DNA_ligase_ZBD	PF03119.16	gi|564289974|ref|YP_008876257.1|	-	0.31	11.1	3.3	2.1	8.4	1.3	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_9	PF14369.6	gi|564289974|ref|YP_008876257.1|	-	0.33	11.3	7.6	2.2	8.6	1.0	2.3	1	1	1	2	2	2	0	zinc-ribbon
Zn-ribbon_8	PF09723.10	gi|564289974|ref|YP_008876257.1|	-	0.44	10.7	7.3	0.69	10.1	1.2	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564289974|ref|YP_008876257.1|	-	0.47	10.5	1.6	1.6	8.7	1.6	1.6	1	1	0	1	1	1	0	zinc-ribbons
DUF3090	PF11290.8	gi|564289974|ref|YP_008876257.1|	-	0.52	10.1	2.5	0.58	9.9	0.9	1.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3090)
zf-ACC	PF17848.1	gi|564289974|ref|YP_008876257.1|	-	0.59	10.2	2.3	16	5.7	0.0	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
Zn_Tnp_IS1595	PF12760.7	gi|564289974|ref|YP_008876257.1|	-	1.5	8.9	4.8	6.9	6.7	0.2	2.3	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Ogr_Delta	PF04606.12	gi|564289974|ref|YP_008876257.1|	-	1.8	8.6	3.8	24	5.0	0.0	2.3	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
UPF0547	PF10571.9	gi|564289974|ref|YP_008876257.1|	-	2.9	8.1	7.6	5.4	7.2	7.6	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
MutS_V	PF00488.21	gi|564289975|ref|YP_008876258.1|	-	8.1e-09	35.8	0.0	1.3e-08	35.1	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
AAA_28	PF13521.6	gi|564289975|ref|YP_008876258.1|	-	0.0017	18.6	0.0	0.0017	18.6	0.0	3.2	4	0	0	4	4	4	1	AAA	domain
AAA_21	PF13304.6	gi|564289975|ref|YP_008876258.1|	-	0.0072	16.2	0.0	0.016	15.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
HHH_5	PF14520.6	gi|564289975|ref|YP_008876258.1|	-	0.013	16.1	3.0	0.27	11.9	0.1	3.6	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
AAA_23	PF13476.6	gi|564289975|ref|YP_008876258.1|	-	0.035	14.6	0.0	0.069	13.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|564289975|ref|YP_008876258.1|	-	0.15	12.1	0.0	0.27	11.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IMS_HHH	PF11798.8	gi|564289975|ref|YP_008876258.1|	-	0.19	12.1	0.0	0.58	10.6	0.0	1.9	1	0	0	1	1	1	0	IMS	family	HHH	motif
Apolipoprotein	PF01442.18	gi|564289975|ref|YP_008876258.1|	-	0.4	10.5	8.9	0.081	12.8	4.5	2.0	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
Polyketide_cyc2	PF10604.9	gi|564289976|ref|YP_008876259.1|	-	5.8e-15	55.8	0.5	6.4e-15	55.7	0.5	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.20	gi|564289976|ref|YP_008876259.1|	-	2.8e-08	34.0	0.0	3.7e-08	33.7	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
AHSA1	PF08327.11	gi|564289976|ref|YP_008876259.1|	-	0.00047	20.4	0.0	0.00076	19.7	0.0	1.4	1	1	0	1	1	1	1	Activator	of	Hsp90	ATPase	homolog	1-like	protein
COXG	PF06240.13	gi|564289976|ref|YP_008876259.1|	-	0.0074	16.0	0.0	0.027	14.2	0.0	1.9	1	1	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
E1-E2_ATPase	PF00122.20	gi|564289978|ref|YP_008876261.1|	-	2.4e-45	154.3	2.3	2.4e-45	154.3	2.3	2.1	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|564289978|ref|YP_008876261.1|	-	8.9e-34	117.6	5.3	2e-33	116.5	5.3	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|564289978|ref|YP_008876261.1|	-	2e-09	37.7	0.0	5.7e-09	36.3	0.0	1.9	1	0	0	1	1	1	1	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|564289978|ref|YP_008876261.1|	-	3.3e-05	23.8	0.8	4.8e-05	23.2	0.8	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
ATPase-cat_bd	PF12156.8	gi|564289978|ref|YP_008876261.1|	-	0.008	16.9	0.6	0.025	15.3	0.4	1.9	2	0	0	2	2	2	1	Putative	metal-binding	domain	of	cation	transport	ATPase
DsbD_2	PF13386.6	gi|564289979|ref|YP_008876262.1|	-	1e-49	169.2	16.8	1.3e-49	168.8	16.8	1.0	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
YtpI	PF14007.6	gi|564289979|ref|YP_008876262.1|	-	5.1	7.3	5.8	3.2	8.0	0.8	2.3	2	0	0	2	2	2	0	YtpI-like	protein
DUF4131	PF13567.6	gi|564289980|ref|YP_008876263.1|	-	0.17	11.6	0.9	0.17	11.6	0.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
Copper-bind	PF00127.20	gi|564289981|ref|YP_008876264.1|	-	1.2e-34	118.7	1.5	1.4e-16	60.8	0.1	2.9	2	2	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
SPC25	PF06703.11	gi|564289981|ref|YP_008876264.1|	-	0.11	12.3	0.2	0.21	11.4	0.2	1.4	1	0	0	1	1	1	0	Microsomal	signal	peptidase	25	kDa	subunit	(SPC25)
PKD	PF00801.20	gi|564289981|ref|YP_008876264.1|	-	0.17	11.8	16.0	0.16	11.9	0.9	2.8	2	1	0	2	2	2	0	PKD	domain
IATP	PF04568.12	gi|564289981|ref|YP_008876264.1|	-	2.3	8.7	0.0	2.3	8.7	0.0	2.8	3	0	0	3	3	3	0	Mitochondrial	ATPase	inhibitor,	IATP
COX2	PF00116.20	gi|564289982|ref|YP_008876265.1|	-	7.1e-12	45.3	0.1	9.2e-12	44.9	0.1	1.2	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|564289982|ref|YP_008876265.1|	-	5.1e-06	26.5	0.0	8e-06	25.9	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF4859	PF16151.5	gi|564289982|ref|YP_008876265.1|	-	0.092	12.6	0.3	0.15	11.9	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4859)
COX1	PF00115.20	gi|564289983|ref|YP_008876266.1|	-	5e-94	315.6	53.3	5e-94	315.6	53.3	1.9	1	1	1	2	2	2	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF11	PF01345.18	gi|564289984|ref|YP_008876267.1|	-	0.041	14.2	6.2	0.064	13.6	6.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF11
zinc_ribbon_2	PF13240.6	gi|564289985|ref|YP_008876268.1|	-	7e-05	22.4	3.2	0.00011	21.8	3.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564289985|ref|YP_008876268.1|	-	0.00014	21.8	1.0	0.00023	21.1	1.0	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564289985|ref|YP_008876268.1|	-	0.0013	18.0	5.7	0.0026	17.1	5.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|564289985|ref|YP_008876268.1|	-	0.031	15.0	0.1	0.046	14.5	0.1	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
zf-C3HC4_3	PF13920.6	gi|564289985|ref|YP_008876268.1|	-	0.22	11.4	0.0	0.32	10.9	0.0	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF35_N	PF12172.8	gi|564289985|ref|YP_008876268.1|	-	0.22	11.4	3.9	0.52	10.3	3.9	1.6	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
UPF0547	PF10571.9	gi|564289985|ref|YP_008876268.1|	-	0.78	9.9	4.7	1.3	9.1	4.7	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Utp14	PF04615.13	gi|564289985|ref|YP_008876268.1|	-	3.5	6.1	7.1	4.6	5.7	7.1	1.0	1	0	0	1	1	1	0	Utp14	protein
DZR	PF12773.7	gi|564289986|ref|YP_008876269.1|	-	1.2e-11	44.4	8.4	1.2e-11	44.4	8.4	2.3	2	0	0	2	2	2	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564289986|ref|YP_008876269.1|	-	1.6e-10	40.0	15.0	1.9e-05	23.9	1.5	3.9	4	0	0	4	4	4	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564289986|ref|YP_008876269.1|	-	6.2e-09	35.3	15.7	4.4e-05	23.0	0.9	3.4	4	0	0	4	4	4	2	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|564289986|ref|YP_008876269.1|	-	8e-07	29.7	9.5	0.0031	18.2	0.8	2.8	3	0	0	3	3	3	2	zinc-ribbon	family
FHA	PF00498.26	gi|564289986|ref|YP_008876269.1|	-	1.3e-06	28.6	0.0	2.4e-06	27.8	0.0	1.5	1	0	0	1	1	1	1	FHA	domain
UPF0547	PF10571.9	gi|564289986|ref|YP_008876269.1|	-	0.016	15.3	1.9	0.016	15.3	1.9	3.5	4	0	0	4	4	4	0	Uncharacterised	protein	family	UPF0547
Nudix_N_2	PF14803.6	gi|564289986|ref|YP_008876269.1|	-	0.02	14.8	9.9	0.041	13.8	0.7	3.9	4	0	0	4	4	3	0	Nudix	N-terminal
Zn-ribbon_8	PF09723.10	gi|564289986|ref|YP_008876269.1|	-	0.025	14.7	15.6	0.16	12.1	0.6	4.4	3	1	0	4	4	4	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564289986|ref|YP_008876269.1|	-	0.028	14.4	11.4	0.73	9.9	0.6	3.2	2	1	0	3	3	3	0	zinc-ribbons
zinc-ribbon_6	PF10005.9	gi|564289986|ref|YP_008876269.1|	-	0.034	14.8	2.4	4.7	8.0	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|564289986|ref|YP_008876269.1|	-	0.36	10.8	1.5	31	4.6	0.0	3.6	3	0	0	3	3	3	0	zinc-ribbon	domain
HypA	PF01155.19	gi|564289986|ref|YP_008876269.1|	-	0.36	10.9	10.9	0.37	10.8	0.2	3.2	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-C3HC4_3	PF13920.6	gi|564289986|ref|YP_008876269.1|	-	0.39	10.6	8.8	2.3	8.2	0.2	3.4	3	1	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
PLATZ	PF04640.14	gi|564289986|ref|YP_008876269.1|	-	0.42	11.3	5.1	1.5	9.5	0.8	2.4	1	1	1	2	2	2	0	PLATZ	transcription	factor
Rad50_zn_hook	PF04423.14	gi|564289986|ref|YP_008876269.1|	-	0.48	10.3	4.3	7.8	6.4	0.2	2.8	3	0	0	3	3	2	0	Rad50	zinc	hook	motif
IBR	PF01485.21	gi|564289986|ref|YP_008876269.1|	-	0.52	10.6	12.7	11	6.4	0.0	4.2	3	1	0	3	3	3	0	IBR	domain,	a	half	RING-finger	domain
Prok-RING_4	PF14447.6	gi|564289986|ref|YP_008876269.1|	-	1.2	9.1	10.2	24	4.9	0.0	3.7	4	1	0	4	4	3	0	Prokaryotic	RING	finger	family	4
zf-Di19	PF05605.12	gi|564289986|ref|YP_008876269.1|	-	2.2	8.7	7.5	9.8	6.6	0.1	3.4	3	0	0	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
Apt1	PF10351.9	gi|564289986|ref|YP_008876269.1|	-	2.6	6.8	4.4	3.4	6.4	4.4	1.3	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
zinc_ribbon_9	PF14369.6	gi|564289986|ref|YP_008876269.1|	-	4	7.8	23.5	6.3	7.1	0.2	5.1	2	1	3	5	5	5	0	zinc-ribbon
OrfB_Zn_ribbon	PF07282.11	gi|564289986|ref|YP_008876269.1|	-	5.3	7.1	17.7	4.6	7.2	1.4	3.6	2	1	1	3	3	3	0	Putative	transposase	DNA-binding	domain
PP2C_2	PF13672.6	gi|564289987|ref|YP_008876270.1|	-	5.1e-11	42.6	0.0	1e-10	41.6	0.0	1.4	1	1	0	1	1	1	1	Protein	phosphatase	2C
PP2C	PF00481.21	gi|564289987|ref|YP_008876270.1|	-	2.7e-05	24.0	0.1	0.00021	21.0	0.0	2.3	2	2	0	2	2	2	1	Protein	phosphatase	2C
SpoIIE	PF07228.12	gi|564289987|ref|YP_008876270.1|	-	5.5e-05	23.2	4.3	0.00032	20.7	4.3	2.1	1	1	0	1	1	1	1	Stage	II	sporulation	protein	E	(SpoIIE)
Pkinase	PF00069.25	gi|564289988|ref|YP_008876271.1|	-	2.5e-28	99.2	0.0	3.1e-28	98.9	0.0	1.1	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.17	gi|564289988|ref|YP_008876271.1|	-	1.9e-15	56.9	0.0	2.4e-15	56.5	0.0	1.2	1	0	0	1	1	1	1	Protein	tyrosine	kinase
FHA	PF00498.26	gi|564289988|ref|YP_008876271.1|	-	7.4e-06	26.2	0.0	1.8e-05	25.0	0.0	1.7	1	1	0	1	1	1	1	FHA	domain
RIO1	PF01163.22	gi|564289988|ref|YP_008876271.1|	-	0.0047	16.5	0.0	0.0077	15.9	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.23	gi|564289988|ref|YP_008876271.1|	-	0.0068	16.3	0.2	0.015	15.2	0.0	1.7	2	0	0	2	2	2	1	Phosphotransferase	enzyme	family
Kinase-like	PF14531.6	gi|564289988|ref|YP_008876271.1|	-	0.011	15.1	0.0	0.098	12.0	0.0	2.0	2	0	0	2	2	2	0	Kinase-like
Pkinase_fungal	PF17667.1	gi|564289988|ref|YP_008876271.1|	-	0.19	10.5	0.0	0.29	9.9	0.0	1.2	1	0	0	1	1	1	0	Fungal	protein	kinase
VWA	PF00092.28	gi|564289989|ref|YP_008876272.1|	-	2.9e-16	60.2	0.1	1.6e-15	57.8	0.0	1.9	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|564289989|ref|YP_008876272.1|	-	2.3e-12	47.5	0.7	1.5e-11	44.9	0.0	2.2	2	1	1	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|564289989|ref|YP_008876272.1|	-	9e-07	29.0	0.0	1.8e-06	28.0	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|564289989|ref|YP_008876272.1|	-	9.8e-06	25.1	0.0	2.2e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
DUF2201	PF09967.9	gi|564289989|ref|YP_008876272.1|	-	5.5e-05	23.3	0.0	0.00014	22.0	0.0	1.7	1	0	0	1	1	1	1	VWA-like	domain	(DUF2201)
DUF1735	PF08522.10	gi|564289989|ref|YP_008876272.1|	-	0.12	13.0	0.1	0.26	11.9	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1735)
MerT	PF02411.15	gi|564289990|ref|YP_008876273.1|	-	0.72	9.9	7.1	0.42	10.6	4.6	1.9	1	1	1	2	2	2	0	MerT	mercuric	transport	protein
DUF3179	PF11376.8	gi|564289991|ref|YP_008876274.1|	-	8.4e-100	333.8	0.1	9.8e-100	333.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3179)
Abhydrolase_2	PF02230.16	gi|564289992|ref|YP_008876275.1|	-	2.6e-20	73.2	0.0	1.4e-19	70.8	0.0	1.8	1	1	0	1	1	1	1	Phospholipase/Carboxylesterase
DLH	PF01738.18	gi|564289992|ref|YP_008876275.1|	-	2.2e-07	30.7	0.0	3.8e-07	29.9	0.0	1.5	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Hydrolase_4	PF12146.8	gi|564289992|ref|YP_008876275.1|	-	4.2e-05	22.9	0.2	0.27	10.5	0.0	3.0	2	1	1	3	3	3	2	Serine	aminopeptidase,	S33
FSH1	PF03959.13	gi|564289992|ref|YP_008876275.1|	-	0.00014	21.6	0.0	0.00017	21.3	0.0	1.3	1	0	0	1	1	1	1	Serine	hydrolase	(FSH1)
Abhydrolase_1	PF00561.20	gi|564289992|ref|YP_008876275.1|	-	0.0035	17.0	0.0	0.0056	16.4	0.0	1.5	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
PE-PPE	PF08237.11	gi|564289992|ref|YP_008876275.1|	-	0.019	14.5	0.0	0.032	13.8	0.0	1.3	1	0	0	1	1	1	0	PE-PPE	domain
Peptidase_S9	PF00326.21	gi|564289992|ref|YP_008876275.1|	-	0.028	13.9	0.1	3.4	7.1	0.0	2.4	2	1	1	3	3	3	0	Prolyl	oligopeptidase	family
DUF3243	PF11588.8	gi|564289992|ref|YP_008876275.1|	-	0.11	12.8	0.0	0.74	10.2	0.0	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3243)
Glyoxalase	PF00903.25	gi|564289993|ref|YP_008876276.1|	-	1.9e-23	83.1	0.1	8.3e-13	48.7	0.0	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|564289993|ref|YP_008876276.1|	-	3.3e-05	24.6	0.6	0.0053	17.5	0.0	2.5	2	1	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|564289993|ref|YP_008876276.1|	-	0.0026	18.0	0.0	1.4	9.2	0.0	3.6	2	2	0	2	2	2	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
CppA_N	PF14506.6	gi|564289993|ref|YP_008876276.1|	-	0.037	14.1	0.0	1.6	8.8	0.0	2.2	2	0	0	2	2	2	0	CppA	N-terminal
UPF0058	PF01893.16	gi|564289994|ref|YP_008876277.1|	-	5.7e-21	74.6	0.5	6.5e-21	74.4	0.5	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
DUF555	PF04475.12	gi|564289995|ref|YP_008876278.1|	-	1.6e-40	137.5	0.2	2.1e-40	137.1	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF555)
zf-ribbon_3	PF13248.6	gi|564289995|ref|YP_008876278.1|	-	0.025	14.0	0.2	0.046	13.1	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|564289995|ref|YP_008876278.1|	-	0.038	13.9	0.1	0.084	12.8	0.1	1.6	1	0	0	1	1	1	0	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.7	gi|564289995|ref|YP_008876278.1|	-	0.11	12.4	0.0	0.25	11.4	0.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564289995|ref|YP_008876278.1|	-	0.12	12.1	0.1	0.22	11.3	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
HhH-GPD	PF00730.25	gi|564289996|ref|YP_008876279.1|	-	1.1e-13	51.6	0.0	1.9e-13	50.8	0.0	1.4	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
OGG_N	PF07934.12	gi|564289996|ref|YP_008876279.1|	-	4.3e-05	23.6	0.0	0.00022	21.3	0.0	2.0	1	1	0	1	1	1	1	8-oxoguanine	DNA	glycosylase,	N-terminal	domain
Acylphosphatase	PF00708.18	gi|564289997|ref|YP_008876280.1|	-	5.9e-25	87.5	0.6	6.9e-25	87.3	0.6	1.1	1	0	0	1	1	1	1	Acylphosphatase
YjeF_N	PF03853.15	gi|564289998|ref|YP_008876281.1|	-	1.2e-43	149.0	2.1	1.2e-43	149.0	0.3	1.8	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
Carb_kinase	PF01256.17	gi|564289998|ref|YP_008876281.1|	-	2.4e-43	148.4	0.4	3.5e-43	147.9	0.4	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
HK	PF02110.15	gi|564289998|ref|YP_008876281.1|	-	1.7e-06	27.6	0.0	3e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
GTP-bdg_N	PF13167.6	gi|564289999|ref|YP_008876282.1|	-	7.1e-22	77.9	0.0	2e-21	76.5	0.0	1.8	1	0	0	1	1	1	1	GTP-binding	GTPase	N-terminal
MMR_HSR1	PF01926.23	gi|564289999|ref|YP_008876282.1|	-	1.4e-17	63.8	0.0	3.2e-17	62.7	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP-bdg_M	PF16360.5	gi|564289999|ref|YP_008876282.1|	-	1.7e-15	57.4	7.6	3.6e-15	56.3	7.6	1.6	1	0	0	1	1	1	1	GTP-binding	GTPase	Middle	Region
GTP_EFTU	PF00009.27	gi|564289999|ref|YP_008876282.1|	-	1.1e-10	41.4	0.2	3.1e-10	39.9	0.2	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|564289999|ref|YP_008876282.1|	-	8.3e-10	38.8	0.2	7.2e-05	22.8	0.1	2.6	2	0	0	2	2	2	2	RsgA	GTPase
MMR_HSR1_Xtn	PF16897.5	gi|564289999|ref|YP_008876282.1|	-	1.4e-06	28.3	0.1	2.7e-06	27.4	0.1	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
cobW	PF02492.19	gi|564289999|ref|YP_008876282.1|	-	3e-06	27.0	0.3	0.00059	19.5	0.1	2.6	1	1	1	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
FeoB_N	PF02421.18	gi|564289999|ref|YP_008876282.1|	-	8.2e-05	22.2	0.2	0.095	12.2	0.1	2.7	3	0	0	3	3	3	2	Ferrous	iron	transport	protein	B
MnmE_helical	PF12631.7	gi|564289999|ref|YP_008876282.1|	-	0.0021	18.2	0.1	0.0035	17.6	0.1	1.3	1	0	0	1	1	1	1	MnmE	helical	domain
Ras	PF00071.22	gi|564289999|ref|YP_008876282.1|	-	0.0029	17.2	0.0	0.025	14.2	0.0	2.1	2	0	0	2	2	2	1	Ras	family
AAA_14	PF13173.6	gi|564289999|ref|YP_008876282.1|	-	0.013	15.6	0.0	0.029	14.4	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Arf	PF00025.21	gi|564289999|ref|YP_008876282.1|	-	0.014	14.9	1.0	1.1	8.7	1.0	2.4	1	1	0	1	1	1	0	ADP-ribosylation	factor	family
AAA_18	PF13238.6	gi|564289999|ref|YP_008876282.1|	-	0.016	15.8	0.7	0.15	12.6	0.0	2.8	2	1	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|564289999|ref|YP_008876282.1|	-	0.029	14.4	0.0	0.76	9.8	0.0	2.7	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
ABC_tran	PF00005.27	gi|564289999|ref|YP_008876282.1|	-	0.04	14.4	0.0	0.14	12.7	0.0	2.0	1	1	0	1	1	1	0	ABC	transporter
Roc	PF08477.13	gi|564289999|ref|YP_008876282.1|	-	0.04	14.1	0.0	0.51	10.6	0.0	2.3	1	1	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
cwf21	PF08312.12	gi|564289999|ref|YP_008876282.1|	-	0.085	13.0	4.4	1.4	9.1	2.2	2.8	2	0	0	2	2	2	0	cwf21	domain
ATP_bind_1	PF03029.17	gi|564289999|ref|YP_008876282.1|	-	0.09	12.5	0.2	0.51	10.1	0.1	2.1	1	1	1	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_23	PF13476.6	gi|564289999|ref|YP_008876282.1|	-	0.51	10.8	4.9	21	5.6	0.0	2.8	2	1	1	3	3	3	0	AAA	domain
DUF4604	PF15377.6	gi|564289999|ref|YP_008876282.1|	-	0.59	10.5	3.3	0.4	11.1	0.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4604)
peroxidase	PF00141.23	gi|564290000|ref|YP_008876283.1|	-	5e-91	304.5	0.0	2.8e-51	174.4	0.0	2.3	2	0	0	2	2	2	2	Peroxidase
FUN14	PF04930.15	gi|564290001|ref|YP_008876284.1|	-	2.4e-21	75.9	5.8	2.9e-21	75.7	5.8	1.1	1	0	0	1	1	1	1	FUN14	family
Cu	PF17563.2	gi|564290001|ref|YP_008876284.1|	-	2.6	8.3	6.6	3.6	7.9	1.0	2.3	2	0	0	2	2	2	0	Cupiennin
SBDS	PF01172.18	gi|564290002|ref|YP_008876285.1|	-	5.3e-20	71.3	0.0	8.1e-20	70.7	0.0	1.3	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.10	gi|564290002|ref|YP_008876285.1|	-	1.9e-17	63.4	0.0	3.2e-17	62.6	0.0	1.4	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
Proteasome	PF00227.26	gi|564290003|ref|YP_008876286.1|	-	5.2e-59	198.9	0.0	6.7e-59	198.6	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|564290003|ref|YP_008876286.1|	-	8.9e-14	50.9	0.1	1.6e-13	50.1	0.1	1.4	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
RNase_P_Rpp14	PF01900.19	gi|564290004|ref|YP_008876287.1|	-	4.6e-22	78.2	0.0	8.5e-22	77.4	0.0	1.4	2	0	0	2	2	2	1	Rpp14/Pop5	family
DUF5073	PF16817.5	gi|564291353|ref|YP_008876288.1|	-	0.0036	17.3	0.0	0.0049	16.9	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5073)
RNase_P_p30	PF01876.16	gi|564290005|ref|YP_008876290.1|	-	3.8e-44	150.7	0.0	4.3e-44	150.6	0.0	1.0	1	0	0	1	1	1	1	RNase	P	subunit	p30
FMN_dh	PF01070.18	gi|564290005|ref|YP_008876290.1|	-	0.035	13.1	1.0	0.06	12.4	1.0	1.4	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
RNA_binding	PF01877.17	gi|564290006|ref|YP_008876291.1|	-	7.9e-32	110.0	0.0	9.7e-32	109.7	0.0	1.1	1	0	0	1	1	1	1	RNA	binding
Ins145_P3_rec	PF08709.11	gi|564290006|ref|YP_008876291.1|	-	0.19	10.9	0.0	0.23	10.6	0.0	1.2	1	0	0	1	1	1	0	Inositol	1,4,5-trisphosphate/ryanodine	receptor
DUF1918	PF08940.11	gi|564290007|ref|YP_008876292.1|	-	0.0023	17.5	0.1	0.0026	17.3	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1918)
LBR_tudor	PF09465.10	gi|564290007|ref|YP_008876292.1|	-	0.029	14.2	0.0	0.052	13.4	0.0	1.5	1	0	0	1	1	1	0	Lamin-B	receptor	of	TUDOR	domain
Tudor_3	PF18115.1	gi|564290007|ref|YP_008876292.1|	-	0.1	12.4	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	DNA	repair	protein	Crb2	Tudor	domain
NUDIX	PF00293.28	gi|564290008|ref|YP_008876293.1|	-	1.4e-16	60.7	0.9	2e-16	60.2	0.9	1.2	1	0	0	1	1	1	1	NUDIX	domain
DUF4838	PF16126.5	gi|564290009|ref|YP_008876294.1|	-	0.074	12.4	0.0	0.094	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4838)
ThiC_Rad_SAM	PF01964.18	gi|564290010|ref|YP_008876295.1|	-	1.4e-192	640.1	0.0	1.6e-192	639.9	0.0	1.0	1	0	0	1	1	1	1	Radical	SAM	ThiC	family
SBP_bac_11	PF13531.6	gi|564290011|ref|YP_008876296.1|	-	1.6e-20	73.8	3.6	2.1e-20	73.5	3.6	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.22	gi|564290012|ref|YP_008876297.1|	-	2.1e-16	60.2	13.0	2.1e-16	60.2	13.0	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC2_membrane_5	PF13346.6	gi|564290012|ref|YP_008876297.1|	-	0.78	9.2	9.8	1.5	8.3	9.8	1.5	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
MobB	PF03205.14	gi|564290013|ref|YP_008876298.1|	-	7.6e-27	93.8	0.0	1.3e-26	93.0	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MoaE	PF02391.17	gi|564290013|ref|YP_008876298.1|	-	1.2e-22	80.3	0.1	2e-22	79.6	0.1	1.4	1	0	0	1	1	1	1	MoaE	protein
GTP_EFTU	PF00009.27	gi|564290013|ref|YP_008876298.1|	-	0.00043	19.9	0.4	0.0009	18.8	0.4	1.5	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
MMR_HSR1	PF01926.23	gi|564290013|ref|YP_008876298.1|	-	0.0017	18.4	0.0	0.0036	17.4	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|564290013|ref|YP_008876298.1|	-	0.0064	16.9	1.6	0.025	15.0	1.5	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|564290013|ref|YP_008876298.1|	-	0.016	15.7	0.0	0.025	15.1	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
PRK	PF00485.18	gi|564290013|ref|YP_008876298.1|	-	0.019	14.7	0.0	0.041	13.6	0.0	1.6	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_33	PF13671.6	gi|564290013|ref|YP_008876298.1|	-	0.029	14.5	0.0	0.059	13.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|564290013|ref|YP_008876298.1|	-	0.037	14.5	0.0	0.081	13.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|564290013|ref|YP_008876298.1|	-	0.041	14.4	0.0	1.7	9.2	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
MeaB	PF03308.16	gi|564290013|ref|YP_008876298.1|	-	0.046	12.7	0.1	0.089	11.8	0.1	1.5	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Roc	PF08477.13	gi|564290013|ref|YP_008876298.1|	-	0.056	13.7	0.0	0.11	12.8	0.0	1.4	1	0	0	1	1	1	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
SRPRB	PF09439.10	gi|564290013|ref|YP_008876298.1|	-	0.084	12.3	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
AAA_22	PF13401.6	gi|564290013|ref|YP_008876298.1|	-	0.094	13.0	0.0	0.21	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF3906	PF13046.6	gi|564290013|ref|YP_008876298.1|	-	0.14	12.2	0.2	0.34	11.0	0.2	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3906)
AAA_29	PF13555.6	gi|564290013|ref|YP_008876298.1|	-	0.17	11.6	0.1	0.37	10.6	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_28	PF13521.6	gi|564290013|ref|YP_008876298.1|	-	0.84	9.9	6.2	26	5.0	6.2	3.0	1	1	0	1	1	1	0	AAA	domain
MoaC	PF01967.21	gi|564290014|ref|YP_008876299.1|	-	4e-48	162.9	4.7	4.8e-48	162.7	4.7	1.0	1	0	0	1	1	1	1	MoaC	family
MoCF_biosynth	PF00994.24	gi|564290015|ref|YP_008876300.1|	-	1.4e-36	125.3	0.2	1.7e-36	125.0	0.2	1.1	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
TRAM	PF01938.20	gi|564290016|ref|YP_008876301.1|	-	2e-10	40.5	2.6	3.3e-10	39.8	2.6	1.4	1	0	0	1	1	1	1	TRAM	domain
DUF4551	PF15087.6	gi|564290016|ref|YP_008876301.1|	-	1.7	7.4	4.3	1.9	7.2	4.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4551)
AF-4	PF05110.13	gi|564290016|ref|YP_008876301.1|	-	7.8	4.4	14.4	8.6	4.3	14.4	1.0	1	0	0	1	1	1	0	AF-4	proto-oncoprotein
HD	PF01966.22	gi|564290018|ref|YP_008876303.1|	-	3e-09	37.2	2.6	4.7e-09	36.5	2.6	1.3	1	0	0	1	1	1	1	HD	domain
HTH_10	PF04967.12	gi|564290019|ref|YP_008876304.1|	-	1e-20	73.3	0.1	1.6e-20	72.6	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564290019|ref|YP_008876304.1|	-	0.00038	20.4	4.0	0.00069	19.5	4.0	1.4	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
GerE	PF00196.19	gi|564290019|ref|YP_008876304.1|	-	0.0041	16.6	0.0	0.32	10.6	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
MarR_2	PF12802.7	gi|564290019|ref|YP_008876304.1|	-	0.0077	16.1	0.1	0.096	12.6	0.1	2.7	3	0	0	3	3	3	1	MarR	family
Sigma70_r4	PF04545.16	gi|564290019|ref|YP_008876304.1|	-	0.015	14.8	0.0	0.038	13.5	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
LexA_DNA_bind	PF01726.16	gi|564290019|ref|YP_008876304.1|	-	0.032	14.0	0.1	0.16	11.7	0.1	2.1	1	1	0	1	1	1	0	LexA	DNA	binding	domain
HTH_24	PF13412.6	gi|564290019|ref|YP_008876304.1|	-	0.076	12.6	0.0	0.18	11.4	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Rieske	PF00355.26	gi|564290021|ref|YP_008876306.1|	-	1.4e-09	37.8	0.0	2e-09	37.3	0.0	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Cytochrom_B_N_2	PF13631.6	gi|564290022|ref|YP_008876307.1|	-	1.2e-44	152.4	0.3	1.2e-44	152.4	0.3	2.5	3	0	0	3	3	3	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrome_B	PF00033.19	gi|564290022|ref|YP_008876307.1|	-	5.1e-31	108.0	12.6	5.8e-30	104.5	8.0	3.0	2	1	0	2	2	2	1	Cytochrome	b/b6/petB
Cytochrom_B_C	PF00032.17	gi|564290022|ref|YP_008876307.1|	-	1.2e-06	28.8	1.8	1.6e-06	28.3	0.3	2.1	2	0	0	2	2	2	1	Cytochrome	b(C-terminal)/b6/petD
DUF4405	PF14358.6	gi|564290022|ref|YP_008876307.1|	-	0.00075	20.0	6.9	0.00075	20.0	6.9	3.0	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4405)
Mntp	PF02659.15	gi|564290022|ref|YP_008876307.1|	-	0.099	12.4	0.1	0.099	12.4	0.1	2.5	3	0	0	3	3	3	0	Putative	manganese	efflux	pump
UCR_Fe-S_N	PF10399.9	gi|564290022|ref|YP_008876307.1|	-	0.21	11.0	0.1	0.21	11.0	0.1	3.4	4	0	0	4	4	4	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Ni_hydr_CYTB	PF01292.20	gi|564290022|ref|YP_008876307.1|	-	4.1	7.0	20.8	0.019	14.6	1.9	3.2	2	1	1	3	3	3	0	Prokaryotic	cytochrome	b561
DUF2339	PF10101.9	gi|564290023|ref|YP_008876308.1|	-	0.014	14.0	0.3	0.014	14.0	0.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2339)
XdhC_C	PF13478.6	gi|564290023|ref|YP_008876308.1|	-	0.069	13.7	0.0	0.077	13.5	0.0	1.1	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Molybdopterin	PF00384.22	gi|564290024|ref|YP_008876309.1|	-	5e-87	292.6	0.0	7.8e-87	292.0	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564290024|ref|YP_008876309.1|	-	5.5e-22	77.9	0.0	1.2e-21	76.8	0.0	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
TAT_signal	PF10518.9	gi|564290024|ref|YP_008876309.1|	-	0.024	14.5	3.4	0.045	13.6	3.4	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Molybdop_Fe4S4	PF04879.16	gi|564290024|ref|YP_008876309.1|	-	0.028	14.4	0.3	0.057	13.4	0.3	1.5	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
CDC48_N	PF02359.18	gi|564290024|ref|YP_008876309.1|	-	0.087	13.0	0.0	0.21	11.8	0.0	1.6	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
Fer4_11	PF13247.6	gi|564290025|ref|YP_008876310.1|	-	5.9e-29	100.1	6.3	5.9e-29	100.1	6.3	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564290025|ref|YP_008876310.1|	-	5.5e-12	45.6	17.0	6.3e-05	23.0	7.3	3.3	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564290025|ref|YP_008876310.1|	-	4.5e-11	43.2	13.1	8.2e-06	26.3	2.1	3.5	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564290025|ref|YP_008876310.1|	-	2.3e-07	30.9	19.1	0.0063	16.6	6.3	3.4	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564290025|ref|YP_008876310.1|	-	0.0007	19.5	30.4	0.0047	16.9	2.2	4.2	5	0	0	5	5	4	3	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|564290025|ref|YP_008876310.1|	-	0.00096	18.9	29.6	0.012	15.3	2.8	5.5	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564290025|ref|YP_008876310.1|	-	0.0012	18.8	26.7	0.016	15.3	1.1	4.6	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564290025|ref|YP_008876310.1|	-	0.0052	17.2	1.1	0.0052	17.2	1.1	4.2	5	0	0	5	5	4	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|564290025|ref|YP_008876310.1|	-	0.0089	16.6	0.1	0.0089	16.6	0.1	3.8	3	1	0	3	3	3	1	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_17	PF13534.6	gi|564290025|ref|YP_008876310.1|	-	0.011	16.3	20.0	0.31	11.6	0.2	4.2	4	0	0	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|564290025|ref|YP_008876310.1|	-	0.014	16.1	10.6	0.12	13.1	0.0	3.7	4	0	0	4	4	3	0	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.6	gi|564290025|ref|YP_008876310.1|	-	0.024	14.8	2.3	0.024	14.8	2.3	3.0	4	0	0	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|564290025|ref|YP_008876310.1|	-	0.45	11.6	34.2	0.39	11.7	5.7	4.3	4	0	0	4	4	4	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|564290025|ref|YP_008876310.1|	-	4.3	8.3	25.5	5.6	8.0	1.1	4.1	2	1	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|564290025|ref|YP_008876310.1|	-	7.1	7.2	22.1	1.5	9.3	2.7	4.1	2	1	3	5	5	5	0	4Fe-4S	dicluster	domain
EB_dh	PF09459.10	gi|564290026|ref|YP_008876311.1|	-	2e-33	116.4	5.6	6.7e-31	108.1	5.6	2.0	1	1	0	1	1	1	1	Ethylbenzene	dehydrogenase
Nitrate_red_del	PF02613.15	gi|564290027|ref|YP_008876312.1|	-	3.1e-11	43.4	0.8	1.2e-10	41.5	0.8	1.9	1	1	0	1	1	1	1	Nitrate	reductase	delta	subunit
HEAT_2	PF13646.6	gi|564290029|ref|YP_008876314.1|	-	1.3e-24	86.3	30.7	3e-11	43.6	6.2	3.3	1	1	2	3	3	3	3	HEAT	repeats
HEAT	PF02985.22	gi|564290029|ref|YP_008876314.1|	-	1.1e-08	34.6	12.9	0.77	10.2	0.2	5.9	6	0	0	6	6	6	4	HEAT	repeat
Cnd1	PF12717.7	gi|564290029|ref|YP_008876314.1|	-	4.8e-05	23.5	2.2	0.11	12.5	0.0	4.2	1	1	3	4	4	4	1	non-SMC	mitotic	condensation	complex	subunit	1
HEAT_EZ	PF13513.6	gi|564290029|ref|YP_008876314.1|	-	0.00013	22.4	14.4	0.069	13.7	0.3	5.6	6	0	0	6	6	6	2	HEAT-like	repeat
Vac14_Fab1_bd	PF12755.7	gi|564290029|ref|YP_008876314.1|	-	0.008	16.8	0.1	3.6	8.3	0.0	3.4	2	1	1	3	3	3	1	Vacuolar	14	Fab1-binding	region
Adaptin_N	PF01602.20	gi|564290029|ref|YP_008876314.1|	-	0.02	13.5	0.6	0.52	8.8	0.1	2.6	1	1	1	3	3	3	0	Adaptin	N	terminal	region
DNA_alkylation	PF08713.11	gi|564290029|ref|YP_008876314.1|	-	0.22	11.2	4.7	0.77	9.4	4.1	1.9	1	1	1	2	2	2	0	DNA	alkylation	repair	enzyme
ParA	PF10609.9	gi|564290030|ref|YP_008876315.1|	-	9.2e-62	208.7	0.0	1.3e-61	208.2	0.0	1.1	1	0	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
DUF2249	PF10006.9	gi|564290030|ref|YP_008876315.1|	-	2.7e-16	59.2	0.6	5.9e-16	58.1	0.6	1.6	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
CbiA	PF01656.23	gi|564290030|ref|YP_008876315.1|	-	5.5e-13	49.1	0.0	9.4e-13	48.3	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
FeS_assembly_P	PF01883.19	gi|564290030|ref|YP_008876315.1|	-	6.2e-10	39.1	3.7	8.7e-10	38.6	2.2	2.0	2	0	0	2	2	2	1	Iron-sulfur	cluster	assembly	protein
AAA_31	PF13614.6	gi|564290030|ref|YP_008876315.1|	-	7.5e-06	26.0	0.1	3.9e-05	23.6	0.1	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|564290030|ref|YP_008876315.1|	-	3.5e-05	23.5	0.6	0.0042	16.7	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.11	gi|564290030|ref|YP_008876315.1|	-	5.4e-05	22.6	0.5	8.8e-05	21.9	0.5	1.5	1	1	0	1	1	1	1	ATPase	MipZ
AAA_26	PF13500.6	gi|564290030|ref|YP_008876315.1|	-	0.001	19.0	0.1	0.064	13.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
VirC1	PF07015.11	gi|564290030|ref|YP_008876315.1|	-	0.0017	17.7	0.0	0.0029	16.9	0.0	1.3	1	0	0	1	1	1	1	VirC1	protein
ArsA_ATPase	PF02374.15	gi|564290030|ref|YP_008876315.1|	-	0.0049	16.1	0.6	0.085	12.0	0.2	2.2	2	0	0	2	2	2	1	Anion-transporting	ATPase
UPF0126	PF03458.13	gi|564290031|ref|YP_008876316.1|	-	1.2e-35	121.2	26.9	5.1e-19	67.9	4.4	2.5	3	0	0	3	3	3	2	UPF0126	domain
Nitrate_red_del	PF02613.15	gi|564290032|ref|YP_008876317.1|	-	3.2e-31	108.2	0.0	4.5e-31	107.7	0.0	1.2	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
NrfD	PF03916.14	gi|564290033|ref|YP_008876318.1|	-	1.1e-69	235.5	20.5	2e-69	234.7	20.5	1.3	1	0	0	1	1	1	1	Polysulphide	reductase,	NrfD
Fer4_11	PF13247.6	gi|564290034|ref|YP_008876319.1|	-	2e-21	76.0	18.7	3.6e-14	52.7	7.2	2.7	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564290034|ref|YP_008876319.1|	-	5.5e-18	65.3	26.2	9.7e-09	35.7	10.3	2.8	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564290034|ref|YP_008876319.1|	-	1.1e-16	60.7	23.3	6.1e-10	39.1	7.1	3.5	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|564290034|ref|YP_008876319.1|	-	9.8e-15	53.9	34.9	5.4e-08	32.6	4.4	4.4	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4	PF00037.27	gi|564290034|ref|YP_008876319.1|	-	2.4e-13	49.3	41.5	1.4e-08	34.2	4.3	5.7	5	1	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_9	PF13187.6	gi|564290034|ref|YP_008876319.1|	-	4e-11	42.9	25.5	1.7e-06	28.1	7.6	2.9	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564290034|ref|YP_008876319.1|	-	1.6e-10	40.4	31.9	1.8e-05	24.6	2.0	4.4	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|564290034|ref|YP_008876319.1|	-	6e-10	39.4	19.5	8.2e-05	23.0	5.7	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.7	gi|564290034|ref|YP_008876319.1|	-	2.4e-07	31.2	43.3	0.019	15.8	7.2	4.3	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564290034|ref|YP_008876319.1|	-	4.2e-06	26.9	34.3	0.001	19.4	3.0	4.4	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_15	PF13459.6	gi|564290034|ref|YP_008876319.1|	-	2.7e-05	24.8	14.0	0.012	16.4	0.4	3.8	4	0	0	4	4	4	2	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.6	gi|564290034|ref|YP_008876319.1|	-	4.1e-05	23.6	31.9	0.0018	18.4	2.0	3.9	2	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|564290034|ref|YP_008876319.1|	-	4.1e-05	24.0	25.2	0.031	14.8	8.1	4.0	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564290034|ref|YP_008876319.1|	-	0.024	15.6	31.7	1.9	9.5	10.4	4.2	2	1	2	4	4	4	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.6	gi|564290034|ref|YP_008876319.1|	-	0.024	15.2	1.2	0.024	15.2	1.2	3.8	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_20	PF14691.6	gi|564290034|ref|YP_008876319.1|	-	0.78	9.5	25.3	0.87	9.4	4.6	4.1	3	1	1	4	4	4	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Molybdopterin	PF00384.22	gi|564290035|ref|YP_008876320.1|	-	1.5e-56	192.2	0.0	2.7e-56	191.4	0.0	1.4	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564290035|ref|YP_008876320.1|	-	3.2e-24	85.1	0.1	6.9e-24	84.0	0.1	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|564290035|ref|YP_008876320.1|	-	1.1e-12	47.8	1.1	2.6e-12	46.6	1.1	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.9	gi|564290035|ref|YP_008876320.1|	-	0.0055	16.5	2.5	0.0055	16.5	2.5	1.7	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Molybdopterin_N	PF18364.1	gi|564290035|ref|YP_008876320.1|	-	6.1	7.0	6.8	1.2	9.2	0.1	3.2	4	0	0	4	4	4	0	Molybdopterin	oxidoreductase	N-terminal	domain
Ferredoxin_N	PF16947.5	gi|564290036|ref|YP_008876321.1|	-	1.3e-33	114.9	2.5	1.6e-33	114.6	2.5	1.1	1	0	0	1	1	1	1	N-terminal	region	of	4Fe-4S	ferredoxin	iron-sulfur	binding
HTH_10	PF04967.12	gi|564290037|ref|YP_008876322.1|	-	3e-18	65.4	0.6	5.5e-18	64.5	0.6	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564290037|ref|YP_008876322.1|	-	0.00055	19.9	2.7	0.00082	19.3	2.7	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|564290037|ref|YP_008876322.1|	-	0.002	18.0	0.4	0.014	15.3	0.1	2.3	2	0	0	2	2	2	1	MarR	family
HTH_Tnp_1_2	PF13022.6	gi|564290037|ref|YP_008876322.1|	-	0.0044	17.2	0.1	0.0079	16.3	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
HTH_20	PF12840.7	gi|564290037|ref|YP_008876322.1|	-	0.013	15.6	0.0	0.031	14.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564290037|ref|YP_008876322.1|	-	0.021	14.4	0.0	0.073	12.6	0.0	2.0	1	1	0	1	1	1	0	Sigma-70,	region	4
HTH_24	PF13412.6	gi|564290037|ref|YP_008876322.1|	-	0.021	14.4	0.1	0.061	12.9	0.1	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PuR_N	PF09182.10	gi|564290037|ref|YP_008876322.1|	-	0.022	14.7	0.1	0.96	9.4	0.0	2.2	2	0	0	2	2	2	0	Bacterial	purine	repressor,	N-terminal
HTH_1	PF00126.27	gi|564290037|ref|YP_008876322.1|	-	0.073	13.0	0.6	0.17	11.9	0.1	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.20	gi|564290037|ref|YP_008876322.1|	-	0.078	12.9	0.1	0.2	11.6	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
DUF4250	PF14056.6	gi|564290037|ref|YP_008876322.1|	-	0.08	12.9	0.1	0.18	11.8	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4250)
HTH_3	PF01381.22	gi|564290037|ref|YP_008876322.1|	-	0.097	12.7	0.0	0.25	11.4	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
HTH_11	PF08279.12	gi|564290037|ref|YP_008876322.1|	-	0.13	12.3	0.1	0.26	11.2	0.1	1.5	1	0	0	1	1	1	0	HTH	domain
BatA	PF07584.11	gi|564290038|ref|YP_008876323.1|	-	4.8e-17	62.1	7.9	9.5e-17	61.1	7.9	1.5	1	0	0	1	1	1	1	Aerotolerance	regulator	N-terminal
VWA_2	PF13519.6	gi|564290038|ref|YP_008876323.1|	-	9.1e-07	29.5	0.3	2.1e-06	28.4	0.3	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DUF58	PF01882.18	gi|564290038|ref|YP_008876323.1|	-	0.016	15.5	0.4	0.049	13.9	0.4	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF58
DUF898	PF05987.13	gi|564290038|ref|YP_008876323.1|	-	0.025	13.7	0.3	0.042	12.9	0.3	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF898)
VWA	PF00092.28	gi|564290039|ref|YP_008876324.1|	-	2.7e-20	73.3	0.4	6.6e-18	65.6	0.0	2.6	2	1	0	2	2	2	2	von	Willebrand	factor	type	A	domain
VWA_2	PF13519.6	gi|564290039|ref|YP_008876324.1|	-	1.2e-15	58.1	0.9	2.9e-15	56.8	0.1	2.1	3	0	0	3	3	3	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.6	gi|564290039|ref|YP_008876324.1|	-	2.7e-08	33.9	0.0	8.2e-08	32.3	0.0	1.8	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|564290039|ref|YP_008876324.1|	-	7.8e-07	28.7	0.9	5.2e-05	22.7	0.0	2.9	2	1	1	3	3	3	1	VWA	domain	containing	CoxE-like	protein
Big_3_5	PF16640.5	gi|564290039|ref|YP_008876324.1|	-	9.4e-05	22.5	0.3	9.4e-05	22.5	0.3	3.8	4	0	0	4	4	4	1	Bacterial	Ig-like	domain	(group	3)
DUF1772	PF08592.11	gi|564290039|ref|YP_008876324.1|	-	0.11	12.9	0.1	0.89	9.9	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1772)
PKD	PF00801.20	gi|564290039|ref|YP_008876324.1|	-	0.15	12.0	1.5	9.6	6.1	0.0	3.6	4	0	0	4	4	4	0	PKD	domain
FlaC_arch	PF05377.11	gi|564290040|ref|YP_008876325.1|	-	2.8e-11	43.6	31.9	0.00046	20.5	2.1	5.1	3	1	2	5	5	5	3	Flagella	accessory	protein	C	(FlaC)
DUF1664	PF07889.12	gi|564290040|ref|YP_008876325.1|	-	4.3e-11	42.9	16.2	1.3e-07	31.7	4.1	2.3	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
DivIC	PF04977.15	gi|564290040|ref|YP_008876325.1|	-	2.1e-09	37.0	32.3	0.0036	17.0	3.9	5.5	1	1	5	6	6	6	3	Septum	formation	initiator
CENP-F_leu_zip	PF10473.9	gi|564290040|ref|YP_008876325.1|	-	3.7e-09	36.7	35.0	1.4e-05	25.2	10.9	2.5	1	1	1	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ATG16	PF08614.11	gi|564290040|ref|YP_008876325.1|	-	4.3e-09	36.9	38.9	4.7e-06	27.0	28.7	2.1	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
BLOC1_2	PF10046.9	gi|564290040|ref|YP_008876325.1|	-	8.6e-09	35.6	24.8	0.00032	20.9	5.9	3.5	1	1	2	3	3	3	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TolA_bind_tri	PF16331.5	gi|564290040|ref|YP_008876325.1|	-	1.1e-08	35.0	36.1	0.00035	20.6	5.4	3.7	1	1	3	4	4	4	3	TolA	binding	protein	trimerisation
ZapB	PF06005.12	gi|564290040|ref|YP_008876325.1|	-	1.2e-08	35.3	36.9	0.00039	20.8	3.1	4.1	1	1	3	4	4	4	2	Cell	division	protein	ZapB
ADIP	PF11559.8	gi|564290040|ref|YP_008876325.1|	-	1.3e-08	35.1	29.2	7.7e-06	26.1	5.4	2.3	1	1	1	2	2	2	2	Afadin-	and	alpha	-actinin-Binding
TMF_DNA_bd	PF12329.8	gi|564290040|ref|YP_008876325.1|	-	1.5e-08	34.5	34.7	3e-06	27.1	5.1	4.1	1	1	3	4	4	4	2	TATA	element	modulatory	factor	1	DNA	binding
TPR_MLP1_2	PF07926.12	gi|564290040|ref|YP_008876325.1|	-	2.4e-08	34.1	34.0	3.9e-05	23.7	23.4	3.0	1	1	1	2	2	2	2	TPR/MLP1/MLP2-like	protein
Tropomyosin_1	PF12718.7	gi|564290040|ref|YP_008876325.1|	-	3.3e-08	33.8	39.0	1.2e-05	25.5	22.9	3.0	1	1	1	2	2	2	2	Tropomyosin	like
PspA_IM30	PF04012.12	gi|564290040|ref|YP_008876325.1|	-	3.4e-08	33.3	20.6	0.0087	15.7	0.5	3.4	1	1	2	3	3	3	3	PspA/IM30	family
Spc7	PF08317.11	gi|564290040|ref|YP_008876325.1|	-	3.9e-08	32.5	31.2	2.1e-05	23.5	18.2	2.1	1	1	1	2	2	2	2	Spc7	kinetochore	protein
bZIP_1	PF00170.21	gi|564290040|ref|YP_008876325.1|	-	5.9e-08	32.7	26.3	0.019	15.0	1.1	5.2	1	1	3	5	5	5	3	bZIP	transcription	factor
Tropomyosin	PF00261.20	gi|564290040|ref|YP_008876325.1|	-	1.4e-07	31.1	28.7	2.3e-07	30.5	28.6	1.5	1	1	0	1	1	1	1	Tropomyosin
AAA_13	PF13166.6	gi|564290040|ref|YP_008876325.1|	-	1.5e-07	30.5	13.7	2.3e-07	29.9	13.7	1.2	1	0	0	1	1	1	1	AAA	domain
HemX	PF04375.14	gi|564290040|ref|YP_008876325.1|	-	2.9e-07	30.1	18.4	0.00015	21.2	9.5	2.3	1	1	1	2	2	2	2	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
APG6_N	PF17675.1	gi|564290040|ref|YP_008876325.1|	-	3e-07	31.0	29.5	1.3e-06	29.0	21.0	3.0	1	1	2	3	3	3	2	Apg6	coiled-coil	region
GAS	PF13851.6	gi|564290040|ref|YP_008876325.1|	-	3.4e-07	29.8	24.8	0.00032	20.1	14.7	2.4	1	1	1	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
MAD	PF05557.13	gi|564290040|ref|YP_008876325.1|	-	3.4e-07	29.0	26.4	4.5e-07	28.7	26.4	1.0	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
XhlA	PF10779.9	gi|564290040|ref|YP_008876325.1|	-	4.4e-07	30.0	25.7	0.0047	17.1	3.7	3.7	1	1	1	3	3	3	2	Haemolysin	XhlA
DUF5082	PF16888.5	gi|564290040|ref|YP_008876325.1|	-	4.5e-07	30.2	22.4	1.6e-06	28.4	11.8	2.5	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF5082)
DUF4201	PF13870.6	gi|564290040|ref|YP_008876325.1|	-	6.8e-07	29.2	19.8	4e-06	26.7	12.0	3.0	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF4201)
ERM	PF00769.19	gi|564290040|ref|YP_008876325.1|	-	7.7e-07	29.2	12.5	7.7e-07	29.2	12.5	2.0	1	1	1	2	2	2	1	Ezrin/radixin/moesin	family
HrpB7	PF09486.10	gi|564290040|ref|YP_008876325.1|	-	9e-07	29.4	24.5	0.00099	19.5	11.8	3.0	1	1	1	2	2	2	2	Bacterial	type	III	secretion	protein	(HrpB7)
Atg14	PF10186.9	gi|564290040|ref|YP_008876325.1|	-	1.4e-06	27.7	21.5	8.9e-05	21.7	9.2	2.0	1	1	1	2	2	2	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Lebercilin	PF15619.6	gi|564290040|ref|YP_008876325.1|	-	1.4e-06	28.1	30.7	9.6e-05	22.1	23.9	2.1	1	1	1	2	2	2	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
UPF0242	PF06785.11	gi|564290040|ref|YP_008876325.1|	-	1.5e-06	28.5	28.7	0.00013	22.2	17.5	2.3	1	1	1	2	2	2	2	Uncharacterised	protein	family	(UPF0242)	N-terminus
AIP3	PF03915.13	gi|564290040|ref|YP_008876325.1|	-	1.5e-06	27.5	15.3	2e-06	27.2	15.3	1.0	1	0	0	1	1	1	1	Actin	interacting	protein	3
Mod_r	PF07200.13	gi|564290040|ref|YP_008876325.1|	-	2e-06	28.0	26.2	0.00026	21.1	3.3	3.1	1	1	2	3	3	3	3	Modifier	of	rudimentary	(Mod(r))	protein
HMMR_N	PF15905.5	gi|564290040|ref|YP_008876325.1|	-	2e-06	27.5	22.5	2e-06	27.5	22.5	1.6	1	1	0	1	1	1	1	Hyaluronan	mediated	motility	receptor	N-terminal
Ax_dynein_light	PF10211.9	gi|564290040|ref|YP_008876325.1|	-	2.1e-06	27.8	27.1	0.015	15.2	2.1	3.4	1	1	3	4	4	4	4	Axonemal	dynein	light	chain
MscS_porin	PF12795.7	gi|564290040|ref|YP_008876325.1|	-	2.3e-06	27.4	36.8	0.0012	18.4	5.6	2.0	1	1	1	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
Uso1_p115_C	PF04871.13	gi|564290040|ref|YP_008876325.1|	-	2.5e-06	27.9	32.8	0.00072	19.9	28.1	3.0	1	1	1	2	2	2	2	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Laminin_II	PF06009.12	gi|564290040|ref|YP_008876325.1|	-	3.1e-06	27.2	21.2	0.0016	18.5	11.3	2.8	1	1	2	3	3	3	3	Laminin	Domain	II
Shugoshin_N	PF07558.11	gi|564290040|ref|YP_008876325.1|	-	3.5e-06	26.8	13.4	0.019	14.8	0.9	4.3	4	0	0	4	4	3	1	Shugoshin	N-terminal	coiled-coil	region
bZIP_2	PF07716.15	gi|564290040|ref|YP_008876325.1|	-	4.8e-06	26.5	31.4	0.035	14.2	0.7	6.1	2	1	5	7	7	6	2	Basic	region	leucine	zipper
DUF2205	PF10224.9	gi|564290040|ref|YP_008876325.1|	-	4.9e-06	26.4	3.1	4.9e-06	26.4	3.1	3.8	1	1	2	3	3	3	1	Short	coiled-coil	protein
DUF3450	PF11932.8	gi|564290040|ref|YP_008876325.1|	-	5.2e-06	25.9	26.0	0.00053	19.4	6.0	2.7	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3450)
YabA	PF06156.13	gi|564290040|ref|YP_008876325.1|	-	6.7e-06	26.7	24.3	0.035	14.7	3.4	3.9	1	1	2	3	3	3	2	Initiation	control	protein	YabA
WXG100	PF06013.12	gi|564290040|ref|YP_008876325.1|	-	6.9e-06	26.2	17.4	0.48	10.7	0.1	4.8	1	1	4	6	6	6	1	Proteins	of	100	residues	with	WXG
MAP65_ASE1	PF03999.12	gi|564290040|ref|YP_008876325.1|	-	8.1e-06	24.8	16.3	1e-05	24.5	16.3	1.0	1	0	0	1	1	1	1	Microtubule	associated	protein	(MAP65/ASE1	family)
TMPIT	PF07851.13	gi|564290040|ref|YP_008876325.1|	-	8.4e-06	25.3	13.9	0.006	15.9	0.7	2.1	2	0	0	2	2	2	2	TMPIT-like	protein
IFT57	PF10498.9	gi|564290040|ref|YP_008876325.1|	-	8.4e-06	25.0	21.4	6.3e-05	22.1	12.8	2.0	1	1	1	2	2	2	2	Intra-flagellar	transport	protein	57
Fez1	PF06818.15	gi|564290040|ref|YP_008876325.1|	-	1.1e-05	26.0	26.4	0.0015	19.0	13.5	2.4	1	1	1	2	2	2	2	Fez1
FPP	PF05911.11	gi|564290040|ref|YP_008876325.1|	-	1.7e-05	23.3	28.1	0.0005	18.4	28.7	2.1	1	1	0	1	1	1	1	Filament-like	plant	protein,	long	coiled-coil
DUF4200	PF13863.6	gi|564290040|ref|YP_008876325.1|	-	1.9e-05	25.0	24.0	0.00022	21.6	12.0	3.1	1	1	2	3	3	3	1	Domain	of	unknown	function	(DUF4200)
DUF16	PF01519.16	gi|564290040|ref|YP_008876325.1|	-	2.1e-05	24.9	20.4	0.0067	16.9	2.9	3.0	1	1	2	3	3	3	3	Protein	of	unknown	function	DUF16
Filament	PF00038.21	gi|564290040|ref|YP_008876325.1|	-	2.5e-05	24.0	28.9	0.05	13.2	4.4	2.9	1	1	2	3	3	3	2	Intermediate	filament	protein
Fib_alpha	PF08702.10	gi|564290040|ref|YP_008876325.1|	-	2.6e-05	24.5	20.6	0.015	15.5	11.3	2.1	1	1	1	2	2	2	2	Fibrinogen	alpha/beta	chain	family
EzrA	PF06160.12	gi|564290040|ref|YP_008876325.1|	-	3.1e-05	22.4	23.6	0.0029	15.9	7.4	1.7	1	1	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
NPV_P10	PF05531.12	gi|564290040|ref|YP_008876325.1|	-	3.5e-05	24.2	23.2	0.12	12.8	1.7	3.9	1	1	2	3	3	3	2	Nucleopolyhedrovirus	P10	protein
TMF_TATA_bd	PF12325.8	gi|564290040|ref|YP_008876325.1|	-	3.7e-05	23.9	33.0	0.024	14.9	9.1	3.5	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	TATA	binding
TSC22	PF01166.18	gi|564290040|ref|YP_008876325.1|	-	3.7e-05	23.9	30.8	0.0022	18.3	1.8	4.8	2	2	3	5	5	4	2	TSC-22/dip/bun	family
DUF3584	PF12128.8	gi|564290040|ref|YP_008876325.1|	-	3.9e-05	21.4	24.8	7.1e-05	20.6	24.8	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Phage_GP20	PF06810.11	gi|564290040|ref|YP_008876325.1|	-	4e-05	23.5	28.5	0.00063	19.6	4.8	3.6	1	1	3	4	4	4	2	Phage	minor	structural	protein	GP20
Prefoldin_2	PF01920.20	gi|564290040|ref|YP_008876325.1|	-	5.2e-05	23.2	30.4	0.025	14.5	0.8	4.2	1	1	1	3	3	3	2	Prefoldin	subunit
Laminin_I	PF06008.14	gi|564290040|ref|YP_008876325.1|	-	5.7e-05	23.0	3.6	5.7e-05	23.0	3.6	2.4	1	1	1	2	2	2	1	Laminin	Domain	I
DUF641	PF04859.12	gi|564290040|ref|YP_008876325.1|	-	6.7e-05	23.2	19.5	0.036	14.4	7.0	3.1	1	1	2	3	3	3	1	Plant	protein	of	unknown	function	(DUF641)
DUF724	PF05266.14	gi|564290040|ref|YP_008876325.1|	-	7.1e-05	22.7	3.6	7.1e-05	22.7	3.6	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF724)
KASH_CCD	PF14662.6	gi|564290040|ref|YP_008876325.1|	-	9.1e-05	22.4	32.4	0.0008	19.3	32.4	2.2	1	1	0	1	1	1	1	Coiled-coil	region	of	CCDC155	or	KASH
HSBP1	PF06825.12	gi|564290040|ref|YP_008876325.1|	-	9.8e-05	22.1	18.5	0.0065	16.3	1.7	4.6	2	1	2	4	4	4	1	Heat	shock	factor	binding	protein	1
DUF4618	PF15397.6	gi|564290040|ref|YP_008876325.1|	-	0.00011	21.8	21.2	0.04	13.3	0.5	3.2	1	1	2	3	3	3	1	Domain	of	unknown	function	(DUF4618)
TACC_C	PF05010.14	gi|564290040|ref|YP_008876325.1|	-	0.00011	22.1	19.9	0.00068	19.5	6.4	2.2	1	1	1	2	2	2	1	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
Myosin_tail_1	PF01576.19	gi|564290040|ref|YP_008876325.1|	-	0.00015	19.8	16.5	0.00015	19.8	16.5	2.1	1	1	1	2	2	2	1	Myosin	tail
Syntaxin-6_N	PF09177.11	gi|564290040|ref|YP_008876325.1|	-	0.00015	22.3	28.8	0.031	14.8	6.6	3.5	1	1	2	3	3	3	2	Syntaxin	6,	N-terminal
Swi5	PF07061.11	gi|564290040|ref|YP_008876325.1|	-	0.00021	21.3	22.9	0.31	11.2	2.8	4.2	1	1	3	4	4	4	2	Swi5
DUF4407	PF14362.6	gi|564290040|ref|YP_008876325.1|	-	0.00024	20.5	25.0	0.058	12.7	17.8	2.2	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4407)
Prefoldin	PF02996.17	gi|564290040|ref|YP_008876325.1|	-	0.00026	20.9	26.3	0.039	13.9	0.8	5.0	1	1	4	5	5	5	1	Prefoldin	subunit
HOOK	PF05622.12	gi|564290040|ref|YP_008876325.1|	-	0.00027	19.2	30.5	0.0085	14.3	17.8	2.1	1	1	1	2	2	2	2	HOOK	protein
RmuC	PF02646.16	gi|564290040|ref|YP_008876325.1|	-	0.00032	19.9	15.6	0.14	11.3	0.4	3.2	1	1	2	3	3	3	2	RmuC	family
BRE1	PF08647.11	gi|564290040|ref|YP_008876325.1|	-	0.00038	20.5	1.6	0.00038	20.5	1.6	3.1	1	1	2	3	3	2	1	BRE1	E3	ubiquitin	ligase
Tektin	PF03148.14	gi|564290040|ref|YP_008876325.1|	-	0.00038	19.3	31.2	0.092	11.5	2.5	3.0	1	1	2	3	3	3	2	Tektin	family
DUF812	PF05667.11	gi|564290040|ref|YP_008876325.1|	-	0.00038	19.5	27.9	0.084	11.7	2.1	2.7	1	1	2	3	3	3	3	Protein	of	unknown	function	(DUF812)
FliD_C	PF07195.12	gi|564290040|ref|YP_008876325.1|	-	0.00041	19.9	15.4	0.029	13.8	3.5	3.0	1	1	1	2	2	2	2	Flagellar	hook-associated	protein	2	C-terminus
Spc24	PF08286.11	gi|564290040|ref|YP_008876325.1|	-	0.00042	20.5	35.0	0.03	14.5	5.3	4.2	1	1	3	4	4	4	2	Spc24	subunit	of	Ndc80
zf-C4H2	PF10146.9	gi|564290040|ref|YP_008876325.1|	-	0.00044	20.6	23.1	0.074	13.4	6.4	2.0	1	1	1	2	2	2	2	Zinc	finger-containing	protein
COG2	PF06148.11	gi|564290040|ref|YP_008876325.1|	-	0.00047	20.2	18.5	0.2	11.8	3.3	3.4	1	1	2	3	3	3	2	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
LPP	PF04728.13	gi|564290040|ref|YP_008876325.1|	-	0.00047	20.5	21.1	0.062	13.7	2.1	5.1	2	2	2	5	5	5	1	Lipoprotein	leucine-zipper
DUF948	PF06103.11	gi|564290040|ref|YP_008876325.1|	-	0.0005	20.3	17.4	0.27	11.5	5.4	3.5	1	1	3	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
Cnn_1N	PF07989.11	gi|564290040|ref|YP_008876325.1|	-	0.00053	20.1	31.2	0.049	13.8	3.9	4.7	1	1	3	4	4	4	2	Centrosomin	N-terminal	motif	1
Leu_zip	PF15294.6	gi|564290040|ref|YP_008876325.1|	-	0.00054	19.6	23.3	0.018	14.6	6.2	2.1	1	1	1	2	2	2	2	Leucine	zipper
APG17	PF04108.12	gi|564290040|ref|YP_008876325.1|	-	0.0006	19.0	18.0	0.00088	18.5	18.0	1.2	1	0	0	1	1	1	1	Autophagy	protein	Apg17
CALCOCO1	PF07888.11	gi|564290040|ref|YP_008876325.1|	-	0.00063	18.7	32.3	0.0013	17.7	32.3	1.4	1	1	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
HAUS-augmin3	PF14932.6	gi|564290040|ref|YP_008876325.1|	-	0.00068	19.3	25.3	0.0053	16.4	9.1	2.3	1	1	1	2	2	2	1	HAUS	augmin-like	complex	subunit	3
DUF4988	PF16378.5	gi|564290040|ref|YP_008876325.1|	-	0.00069	19.3	11.5	0.003	17.2	0.2	3.4	2	1	1	3	3	3	1	Domain	of	unknown	function
DUF2730	PF10805.8	gi|564290040|ref|YP_008876325.1|	-	0.00082	19.4	17.9	0.065	13.3	1.9	3.5	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF2730)
Seryl_tRNA_N	PF02403.22	gi|564290040|ref|YP_008876325.1|	-	0.001	19.3	23.8	0.0048	17.1	6.2	2.8	1	1	2	3	3	3	2	Seryl-tRNA	synthetase	N-terminal	domain
CCDC144C	PF14915.6	gi|564290040|ref|YP_008876325.1|	-	0.0013	17.9	27.3	0.02	14.0	21.5	2.2	1	1	1	2	2	2	2	CCDC144C	protein	coiled-coil	region
ABC_tran_CTD	PF16326.5	gi|564290040|ref|YP_008876325.1|	-	0.0014	18.8	31.4	0.07	13.4	5.8	4.7	1	1	2	4	4	4	2	ABC	transporter	C-terminal	domain
BST2	PF16716.5	gi|564290040|ref|YP_008876325.1|	-	0.0017	18.9	26.1	0.073	13.7	4.3	4.1	1	1	3	4	4	4	1	Bone	marrow	stromal	antigen	2
OEP	PF02321.18	gi|564290040|ref|YP_008876325.1|	-	0.0018	18.1	14.6	0.0038	17.0	6.7	2.1	2	0	0	2	2	2	1	Outer	membrane	efflux	protein
CC2-LZ	PF16516.5	gi|564290040|ref|YP_008876325.1|	-	0.0021	18.4	23.0	0.77	10.2	2.8	3.9	1	1	2	3	3	3	0	Leucine	zipper	of	domain	CC2	of	NEMO,	NF-kappa-B	essential	modulator
JIP_LZII	PF16471.5	gi|564290040|ref|YP_008876325.1|	-	0.0022	18.1	35.6	0.0096	16.1	8.6	4.2	1	1	2	3	3	3	1	JNK-interacting	protein	leucine	zipper	II
Jnk-SapK_ap_N	PF09744.9	gi|564290040|ref|YP_008876325.1|	-	0.0023	18.2	33.5	0.0042	17.3	7.4	2.7	1	1	2	3	3	3	1	JNK_SAPK-associated	protein-1
Snapin_Pallidin	PF14712.6	gi|564290040|ref|YP_008876325.1|	-	0.0024	18.3	24.0	1.2	9.6	6.9	4.1	1	1	4	5	5	5	0	Snapin/Pallidin
Exonuc_VII_L	PF02601.15	gi|564290040|ref|YP_008876325.1|	-	0.0024	17.5	18.8	0.017	14.7	18.8	1.9	1	1	0	1	1	1	1	Exonuclease	VII,	large	subunit
DUF4795	PF16043.5	gi|564290040|ref|YP_008876325.1|	-	0.0026	17.4	21.5	0.014	15.0	5.6	2.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4795)
DUF745	PF05335.13	gi|564290040|ref|YP_008876325.1|	-	0.0036	17.1	17.1	0.0042	16.8	11.2	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF745)
DUF2968	PF11180.8	gi|564290040|ref|YP_008876325.1|	-	0.0038	16.9	26.7	0.38	10.4	0.1	3.7	1	1	3	4	4	4	1	Protein	of	unknown	function	(DUF2968)
DivIVA	PF05103.13	gi|564290040|ref|YP_008876325.1|	-	0.0047	17.0	23.2	0.017	15.2	10.7	2.9	1	1	2	3	3	3	1	DivIVA	protein
DUF4686	PF15742.5	gi|564290040|ref|YP_008876325.1|	-	0.0048	16.1	30.7	0.016	14.3	30.7	1.6	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4686)
EMP24_GP25L	PF01105.24	gi|564290040|ref|YP_008876325.1|	-	0.0049	16.8	3.5	0.0049	16.8	3.5	3.6	1	1	1	2	2	1	1	emp24/gp25L/p24	family/GOLD
Golgin_A5	PF09787.9	gi|564290040|ref|YP_008876325.1|	-	0.005	16.3	33.9	0.025	14.0	9.6	2.1	1	1	1	2	2	2	1	Golgin	subfamily	A	member	5
TssO	PF17561.2	gi|564290040|ref|YP_008876325.1|	-	0.0054	16.8	6.1	0.43	10.7	1.3	2.9	1	1	2	3	3	3	1	Type	VI	secretion	system,	TssO
GrpE	PF01025.19	gi|564290040|ref|YP_008876325.1|	-	0.0058	16.3	26.6	0.0087	15.7	0.9	3.8	1	1	2	3	3	3	1	GrpE
Taxilin	PF09728.9	gi|564290040|ref|YP_008876325.1|	-	0.0063	15.7	22.7	0.023	13.9	14.8	2.4	1	1	1	2	2	2	1	Myosin-like	coiled-coil	protein
KxDL	PF10241.9	gi|564290040|ref|YP_008876325.1|	-	0.0067	16.7	17.6	0.91	9.8	5.2	3.7	1	1	2	3	3	3	0	Uncharacterized	conserved	protein
DHR10	PF18595.1	gi|564290040|ref|YP_008876325.1|	-	0.0077	16.3	36.7	0.47	10.5	12.3	3.6	1	1	2	3	3	3	1	Designed	helical	repeat	protein	10	domain
SHE3	PF17078.5	gi|564290040|ref|YP_008876325.1|	-	0.0094	15.7	25.7	0.11	12.2	25.7	2.2	1	1	0	1	1	1	1	SWI5-dependent	HO	expression	protein	3
DUF4763	PF15960.5	gi|564290040|ref|YP_008876325.1|	-	0.01	15.2	24.1	0.1	11.9	18.5	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4763)
DUF2959	PF11172.8	gi|564290040|ref|YP_008876325.1|	-	0.011	15.9	17.8	0.24	11.5	0.9	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2959)
Sec2p	PF06428.11	gi|564290040|ref|YP_008876325.1|	-	0.011	15.7	31.8	0.2	11.6	5.5	3.7	1	1	2	3	3	3	0	GDP/GTP	exchange	factor	Sec2p
DUF3552	PF12072.8	gi|564290040|ref|YP_008876325.1|	-	0.011	15.1	17.1	0.011	15.1	17.1	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
FapA	PF03961.13	gi|564290040|ref|YP_008876325.1|	-	0.012	14.2	19.9	0.035	12.7	3.3	2.0	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
MctB	PF11382.8	gi|564290040|ref|YP_008876325.1|	-	0.012	15.3	2.6	0.012	15.3	2.6	4.6	1	1	3	4	4	4	0	Copper	transport	outer	membrane	protein,	MctB
CENP-H	PF05837.12	gi|564290040|ref|YP_008876325.1|	-	0.012	16.0	27.0	0.26	11.7	1.5	3.3	1	1	2	3	3	3	0	Centromere	protein	H	(CENP-H)
Fungal_TACC	PF12709.7	gi|564290040|ref|YP_008876325.1|	-	0.013	15.9	23.3	1.5	9.3	0.2	5.3	1	1	5	6	6	6	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
Prominin	PF05478.11	gi|564290040|ref|YP_008876325.1|	-	0.013	13.5	15.0	0.035	12.1	7.1	2.5	1	1	0	1	1	1	0	Prominin
DUF2353	PF09789.9	gi|564290040|ref|YP_008876325.1|	-	0.014	14.8	28.1	0.049	13.0	22.0	2.5	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF4094	PF13334.6	gi|564290040|ref|YP_008876325.1|	-	0.014	15.8	0.9	0.014	15.8	0.9	3.1	1	1	1	2	2	1	0	Domain	of	unknown	function	(DUF4094)
GOLGA2L5	PF15070.6	gi|564290040|ref|YP_008876325.1|	-	0.017	13.8	22.7	0.064	11.9	4.5	2.6	1	1	1	2	2	2	0	Putative	golgin	subfamily	A	member	2-like	protein	5
SlyX	PF04102.12	gi|564290040|ref|YP_008876325.1|	-	0.017	15.7	6.7	0.017	15.7	6.7	4.0	1	1	3	4	4	4	0	SlyX
MCPsignal	PF00015.21	gi|564290040|ref|YP_008876325.1|	-	0.018	14.9	10.0	0.036	13.9	4.4	2.5	1	1	2	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
CLZ	PF16526.5	gi|564290040|ref|YP_008876325.1|	-	0.019	15.3	29.9	0.21	12.0	3.9	4.5	1	1	3	4	4	3	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Cob_adeno_trans	PF01923.18	gi|564290040|ref|YP_008876325.1|	-	0.019	15.1	1.7	0.019	15.1	1.7	2.2	1	1	1	2	2	2	0	Cobalamin	adenosyltransferase
PI3K_P85_iSH2	PF16454.5	gi|564290040|ref|YP_008876325.1|	-	0.02	14.5	23.7	0.15	11.6	17.9	3.5	1	1	1	2	2	2	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
Macoilin	PF09726.9	gi|564290040|ref|YP_008876325.1|	-	0.021	13.4	25.4	0.041	12.4	25.4	1.4	1	1	0	1	1	1	0	Macoilin	family
DUF1640	PF07798.11	gi|564290040|ref|YP_008876325.1|	-	0.022	14.8	27.0	0.53	10.3	17.7	3.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1640)
Lectin_N	PF03954.14	gi|564290040|ref|YP_008876325.1|	-	0.022	14.5	17.0	0.65	9.8	9.3	2.8	2	1	0	2	2	2	0	Hepatic	lectin,	N-terminal	domain
Cep57_CLD_2	PF14197.6	gi|564290040|ref|YP_008876325.1|	-	0.023	14.8	8.1	0.023	14.8	8.1	4.5	1	1	3	4	4	3	0	Centrosome	localisation	domain	of	PPC89
DUF4140	PF13600.6	gi|564290040|ref|YP_008876325.1|	-	0.025	15.0	32.4	1.8e+04	-11.3	32.4	4.7	1	1	0	1	1	0	0	N-terminal	domain	of	unknown	function	(DUF4140)
OrfB_IS605	PF01385.19	gi|564290040|ref|YP_008876325.1|	-	0.027	14.7	0.7	0.027	14.7	0.7	1.9	2	1	0	2	2	1	0	Probable	transposase
FmiP_Thoc5	PF09766.9	gi|564290040|ref|YP_008876325.1|	-	0.029	13.7	18.7	0.16	11.2	2.2	2.8	1	1	2	3	3	3	0	Fms-interacting	protein/Thoc5
DUF4472	PF14739.6	gi|564290040|ref|YP_008876325.1|	-	0.031	15.0	23.9	0.46	11.2	7.2	3.3	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4472)
Cep57_MT_bd	PF06657.13	gi|564290040|ref|YP_008876325.1|	-	0.034	14.6	22.8	0.29	11.6	5.2	3.8	1	1	3	4	4	4	0	Centrosome	microtubule-binding	domain	of	Cep57
Sec34	PF04136.15	gi|564290040|ref|YP_008876325.1|	-	0.035	14.0	21.8	0.28	11.0	2.5	3.2	1	1	2	3	3	3	0	Sec34-like	family
T3SSipB	PF16535.5	gi|564290040|ref|YP_008876325.1|	-	0.035	14.6	10.8	0.45	11.0	3.9	2.4	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
Bacillus_HBL	PF05791.11	gi|564290040|ref|YP_008876325.1|	-	0.038	13.8	18.3	0.2	11.5	4.1	2.8	1	1	2	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
Tho2	PF11262.8	gi|564290040|ref|YP_008876325.1|	-	0.039	13.2	17.7	0.32	10.2	2.3	2.2	1	1	0	2	2	2	0	Transcription	factor/nuclear	export	subunit	protein	2
COG5	PF10392.9	gi|564290040|ref|YP_008876325.1|	-	0.04	14.1	11.2	1.1	9.5	0.3	2.8	1	1	2	3	3	3	0	Golgi	transport	complex	subunit	5
HIP1_clath_bdg	PF16515.5	gi|564290040|ref|YP_008876325.1|	-	0.054	14.1	30.2	2.4	8.8	18.1	3.2	1	1	1	2	2	2	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
DASH_Hsk3	PF08227.11	gi|564290040|ref|YP_008876325.1|	-	0.059	13.7	17.6	0.77	10.2	0.4	4.8	2	2	3	5	5	4	0	DASH	complex	subunit	Hsk3	like
SKA1	PF07160.12	gi|564290040|ref|YP_008876325.1|	-	0.062	13.1	15.1	0.21	11.4	1.2	2.7	1	1	1	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
PRKG1_interact	PF15898.5	gi|564290040|ref|YP_008876325.1|	-	0.066	14.1	29.3	27	5.8	3.1	3.5	1	1	1	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
Hormone_1	PF00103.20	gi|564290040|ref|YP_008876325.1|	-	0.07	12.9	6.1	0.16	11.7	0.1	2.6	2	1	1	3	3	3	0	Somatotropin	hormone	family
Fmp27_WPPW	PF10359.9	gi|564290040|ref|YP_008876325.1|	-	0.072	11.9	22.0	0.036	12.9	4.3	2.2	1	1	1	2	2	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
YkyA	PF10368.9	gi|564290040|ref|YP_008876325.1|	-	0.072	12.8	23.2	0.26	10.9	22.8	2.0	1	1	0	1	1	1	0	Putative	cell-wall	binding	lipoprotein
Rab5-bind	PF09311.11	gi|564290040|ref|YP_008876325.1|	-	0.074	12.4	26.8	0.12	11.7	6.2	2.8	1	1	2	3	3	3	0	Rabaptin-like	protein
FH2	PF02181.23	gi|564290040|ref|YP_008876325.1|	-	0.086	11.9	14.3	0.35	10.0	2.0	2.2	1	1	1	2	2	2	0	Formin	Homology	2	Domain
OmpH	PF03938.14	gi|564290040|ref|YP_008876325.1|	-	0.089	13.1	25.5	15	5.9	12.7	2.8	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
CCDC158	PF15921.5	gi|564290040|ref|YP_008876325.1|	-	0.096	10.5	26.3	0.2	9.4	10.6	2.0	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	158
Nup54	PF13874.6	gi|564290040|ref|YP_008876325.1|	-	0.097	12.8	20.7	0.26	11.4	0.8	2.5	1	1	2	3	3	3	0	Nucleoporin	complex	subunit	54
DELLA	PF12041.8	gi|564290040|ref|YP_008876325.1|	-	0.13	12.2	2.7	0.29	11.0	0.4	2.6	2	1	0	2	2	1	0	Transcriptional	regulator	DELLA	protein	N	terminal
RasGAP_C	PF03836.15	gi|564290040|ref|YP_008876325.1|	-	0.14	12.3	20.0	1.8	8.7	0.2	3.3	1	1	2	3	3	3	0	RasGAP	C-terminus
Spectrin	PF00435.21	gi|564290040|ref|YP_008876325.1|	-	0.15	12.5	24.4	2.6	8.6	12.7	3.1	1	1	1	2	2	2	0	Spectrin	repeat
Uds1	PF15456.6	gi|564290040|ref|YP_008876325.1|	-	0.15	12.2	24.1	20	5.4	3.2	3.6	1	1	1	2	2	2	0	Up-regulated	During	Septation
HalX	PF08663.10	gi|564290040|ref|YP_008876325.1|	-	0.17	12.2	45.6	4	7.8	1.8	6.0	1	1	1	2	2	1	0	HalX	domain
Sipho_Gp157	PF05565.11	gi|564290040|ref|YP_008876325.1|	-	0.18	11.8	19.7	1.1	9.2	5.5	2.4	1	1	1	2	2	2	0	Siphovirus	Gp157
DUF1043	PF06295.12	gi|564290040|ref|YP_008876325.1|	-	0.19	11.8	16.0	0.93	9.5	9.5	2.5	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1043)
DUF4164	PF13747.6	gi|564290040|ref|YP_008876325.1|	-	0.19	12.0	36.0	1.9	8.8	4.4	3.1	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4164)
Fzo_mitofusin	PF04799.13	gi|564290040|ref|YP_008876325.1|	-	0.19	11.3	21.5	5	6.7	2.3	3.5	1	1	2	3	3	3	0	fzo-like	conserved	region
Arfaptin	PF06456.13	gi|564290040|ref|YP_008876325.1|	-	0.19	11.3	12.0	0.13	11.9	1.7	2.1	1	1	1	2	2	2	0	Arfaptin-like	domain
BicD	PF09730.9	gi|564290040|ref|YP_008876325.1|	-	0.19	10.1	25.2	0.35	9.2	25.2	1.4	1	1	0	1	1	1	0	Microtubule-associated	protein	Bicaudal-D
Wtap	PF17098.5	gi|564290040|ref|YP_008876325.1|	-	0.22	11.4	31.9	9.3	6.2	18.2	3.3	1	1	1	2	2	2	0	WTAP/Mum2p	family
SCO1-SenC	PF02630.14	gi|564290040|ref|YP_008876325.1|	-	0.24	11.3	1.7	0.49	10.3	0.4	2.0	1	1	1	2	2	1	0	SCO1/SenC
DASH_Dam1	PF08653.10	gi|564290040|ref|YP_008876325.1|	-	0.25	11.2	19.1	1	9.2	1.2	4.8	2	2	3	5	5	4	0	DASH	complex	subunit	Dam1
HALZ	PF02183.18	gi|564290040|ref|YP_008876325.1|	-	0.26	11.5	33.2	0.35	11.1	0.6	4.8	4	1	2	6	6	4	0	Homeobox	associated	leucine	zipper
MtrB	PF05440.12	gi|564290040|ref|YP_008876325.1|	-	0.3	11.5	7.0	11	6.5	0.0	3.9	1	1	3	4	4	3	0	Tetrahydromethanopterin	S-methyltransferase	subunit	B
Phage_GPO	PF05929.11	gi|564290040|ref|YP_008876325.1|	-	0.32	10.6	19.1	3.9	7.0	5.1	2.5	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
Ly49	PF08391.10	gi|564290040|ref|YP_008876325.1|	-	0.32	11.3	8.2	2.1	8.7	1.0	2.3	2	0	0	2	2	2	0	Ly49-like	protein,	N-terminal	region
DUF4446	PF14584.6	gi|564290040|ref|YP_008876325.1|	-	0.33	10.9	18.1	2.9	7.8	2.5	3.9	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF4446)
Pox_F11	PF04943.12	gi|564290040|ref|YP_008876325.1|	-	0.34	9.9	2.3	0.41	9.7	2.3	1.1	1	0	0	1	1	1	0	Poxvirus	F11	protein
RTBV_P46	PF06216.11	gi|564290040|ref|YP_008876325.1|	-	0.34	9.7	2.4	0.27	10.1	0.2	1.8	2	0	0	2	2	2	0	Rice	tungro	bacilliform	virus	P46	protein
Occludin_ELL	PF07303.13	gi|564290040|ref|YP_008876325.1|	-	0.35	11.6	12.7	4.1	8.2	0.2	3.5	1	1	1	2	2	2	0	Occludin	homology	domain
FUSC	PF04632.12	gi|564290040|ref|YP_008876325.1|	-	0.41	9.1	14.0	4.9	5.6	14.0	1.9	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
FemAB	PF02388.16	gi|564290040|ref|YP_008876325.1|	-	0.41	9.5	17.3	0.25	10.2	1.7	2.3	1	1	2	3	3	3	0	FemAB	family
ApoO	PF09769.9	gi|564290040|ref|YP_008876325.1|	-	0.44	10.5	5.3	21	5.1	0.0	3.1	1	1	1	2	2	2	0	Apolipoprotein	O
CCDC106	PF15794.5	gi|564290040|ref|YP_008876325.1|	-	0.47	10.1	21.2	1.1	9.0	0.5	3.8	1	1	2	3	3	3	0	Coiled-coil	domain-containing	protein	106
FAM76	PF16046.5	gi|564290040|ref|YP_008876325.1|	-	0.48	9.7	15.9	1.4	8.2	15.9	1.8	1	1	0	1	1	1	0	FAM76	protein
STAT_alpha	PF01017.20	gi|564290040|ref|YP_008876325.1|	-	0.55	10.1	22.3	0.19	11.6	3.4	2.5	1	1	1	2	2	2	0	STAT	protein,	all-alpha	domain
THOC7	PF05615.13	gi|564290040|ref|YP_008876325.1|	-	0.57	10.5	30.0	3.8	7.8	6.5	4.0	1	1	2	3	3	3	0	Tho	complex	subunit	7
CCCAP	PF15964.5	gi|564290040|ref|YP_008876325.1|	-	0.71	8.1	24.4	0.13	10.5	5.6	2.1	1	1	1	2	2	2	0	Centrosomal	colon	cancer	autoantigen	protein	family
CtIP_N	PF10482.9	gi|564290040|ref|YP_008876325.1|	-	0.73	9.9	28.2	0.65	10.1	14.2	3.3	1	1	2	3	3	2	0	Tumour-suppressor	protein	CtIP	N-terminal	domain
DUF3829	PF12889.7	gi|564290040|ref|YP_008876325.1|	-	0.74	9.2	10.4	1.7	8.0	3.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3829)
HAP1_N	PF04849.13	gi|564290040|ref|YP_008876325.1|	-	0.82	8.8	34.2	4.7	6.3	11.0	2.6	1	1	1	2	2	2	0	HAP1	N-terminal	conserved	region
Cast	PF10174.9	gi|564290040|ref|YP_008876325.1|	-	0.85	7.8	30.4	4.5	5.4	30.2	1.7	1	1	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
YscO	PF07321.12	gi|564290040|ref|YP_008876325.1|	-	0.89	9.5	30.1	0.21	11.5	9.2	3.8	1	1	3	4	4	4	0	Type	III	secretion	protein	YscO
TSNAXIP1_N	PF15739.5	gi|564290040|ref|YP_008876325.1|	-	0.89	10.0	22.3	0.38	11.1	2.8	3.2	1	1	3	4	4	4	0	Translin-associated	factor	X-interacting	N-terminus
DUF2935	PF11155.8	gi|564290040|ref|YP_008876325.1|	-	0.91	9.9	7.2	1.1	9.6	2.8	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2935)
SOGA	PF11365.8	gi|564290040|ref|YP_008876325.1|	-	1	10.5	22.6	0.47	11.6	3.6	3.1	1	1	1	2	2	2	0	Protein	SOGA
Csm1_N	PF18504.1	gi|564290040|ref|YP_008876325.1|	-	1.1	9.7	30.2	4.4	7.7	1.7	4.5	1	1	2	3	3	2	0	Csm1	N-terminal	domain
kleA_kleC	PF17383.2	gi|564290040|ref|YP_008876325.1|	-	1.1	9.6	19.3	19	5.7	1.5	4.7	2	2	1	3	3	3	0	Uncharacterized	KorC	regulated	protein	A
KfrA_N	PF11740.8	gi|564290040|ref|YP_008876325.1|	-	1.1	9.9	31.0	69	4.2	5.7	4.4	1	1	1	2	2	1	0	Plasmid	replication	region	DNA-binding	N-term
EIAV_Rev	PF11129.8	gi|564290040|ref|YP_008876325.1|	-	1.2	9.4	5.5	1.2	9.3	1.0	2.5	1	1	0	2	2	2	0	Rev	protein	of	equine	infectious	anaemia	virus
IFT20	PF14931.6	gi|564290040|ref|YP_008876325.1|	-	1.2	9.3	21.6	0.38	10.9	10.7	2.7	1	1	1	2	2	2	0	Intraflagellar	transport	complex	B,	subunit	20
V_ATPase_I	PF01496.19	gi|564290040|ref|YP_008876325.1|	-	1.2	7.0	21.1	0.32	8.9	3.9	2.3	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
AATF-Che1	PF13339.6	gi|564290040|ref|YP_008876325.1|	-	1.2	9.8	18.2	3.4e+02	1.9	18.2	2.6	1	1	0	1	1	1	0	Apoptosis	antagonizing	transcription	factor
TEX13	PF15186.6	gi|564290040|ref|YP_008876325.1|	-	1.2	8.8	18.7	1.1	8.9	0.4	3.1	1	1	1	3	3	3	0	Testis-expressed	sequence	13	protein	family
Rootletin	PF15035.6	gi|564290040|ref|YP_008876325.1|	-	1.3	9.0	34.1	3.9	7.5	9.8	3.0	1	1	1	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
Cluap1	PF10234.9	gi|564290040|ref|YP_008876325.1|	-	1.3	8.4	26.1	8.7	5.7	11.6	2.7	1	1	1	2	2	2	0	Clusterin-associated	protein-1
DUF2203	PF09969.9	gi|564290040|ref|YP_008876325.1|	-	1.3	9.8	17.2	3.2	8.5	2.1	2.9	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
WEMBL	PF05701.11	gi|564290040|ref|YP_008876325.1|	-	1.3	7.6	24.8	4.1	6.0	24.8	1.5	1	1	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
CEP63	PF17045.5	gi|564290040|ref|YP_008876325.1|	-	1.5	8.7	27.2	4.7	7.0	21.9	2.6	1	1	1	2	2	2	0	Centrosomal	protein	of	63	kDa
Cep57_CLD	PF14073.6	gi|564290040|ref|YP_008876325.1|	-	1.5	8.8	27.3	2.4	8.2	21.3	2.0	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	Cep57
SPATA24	PF15175.6	gi|564290040|ref|YP_008876325.1|	-	1.6	8.6	18.7	2.6	7.9	4.1	2.1	1	1	1	2	2	2	0	Spermatogenesis-associated	protein	24
P4Ha_N	PF08336.11	gi|564290040|ref|YP_008876325.1|	-	1.6	8.7	15.3	2.1	8.4	0.4	3.5	1	1	2	3	3	3	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
Osmo_CC	PF08946.10	gi|564290040|ref|YP_008876325.1|	-	1.8	8.9	25.3	0.86	9.9	2.6	4.2	2	1	3	5	5	4	0	Osmosensory	transporter	coiled	coil
COG6	PF06419.11	gi|564290040|ref|YP_008876325.1|	-	2	6.5	22.4	0.5	8.5	0.9	3.0	1	1	2	3	3	3	0	Conserved	oligomeric	complex	COG6
BORCS7	PF16088.5	gi|564290040|ref|YP_008876325.1|	-	2.1	8.7	8.9	4.3	7.7	3.4	3.1	1	1	2	3	3	3	0	BLOC-1-related	complex	sub-unit	7
PMEI	PF04043.15	gi|564290040|ref|YP_008876325.1|	-	2.1	8.7	11.6	1.5e+02	2.7	10.5	2.8	1	1	0	1	1	1	0	Plant	invertase/pectin	methylesterase	inhibitor
DUF1465	PF07323.12	gi|564290040|ref|YP_008876325.1|	-	2.3	8.1	18.5	0.3	10.9	4.4	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1465)
CorA	PF01544.18	gi|564290040|ref|YP_008876325.1|	-	2.5	7.3	24.2	1.8	7.8	15.5	2.6	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
DUF730	PF05325.11	gi|564290040|ref|YP_008876325.1|	-	2.6	8.1	5.3	8.6	6.4	0.7	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF730)
ISG65-75	PF11727.8	gi|564290040|ref|YP_008876325.1|	-	2.8	7.1	12.9	5.4	6.2	3.9	2.2	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
RPW8	PF05659.11	gi|564290040|ref|YP_008876325.1|	-	3.1	7.5	12.4	6.4	6.5	1.2	3.3	1	1	3	4	4	4	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
DUF5320	PF17253.2	gi|564290040|ref|YP_008876325.1|	-	3.3	8.8	17.5	5.7	8.1	0.5	4.7	1	1	3	4	4	3	0	Family	of	unknown	function	(DUF5320)
Med9	PF07544.13	gi|564290040|ref|YP_008876325.1|	-	3.3	7.9	25.3	2.6	8.2	4.1	3.5	1	1	2	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
LMBR1	PF04791.16	gi|564290040|ref|YP_008876325.1|	-	3.4	6.5	14.3	12	4.6	14.2	1.7	1	1	0	1	1	1	0	LMBR1-like	membrane	protein
DUF1192	PF06698.11	gi|564290040|ref|YP_008876325.1|	-	3.5	7.8	24.0	0.65	10.1	0.8	4.9	2	2	3	5	5	4	0	Protein	of	unknown	function	(DUF1192)
DUF3053	PF11254.8	gi|564290040|ref|YP_008876325.1|	-	3.5	7.2	16.3	8.7	5.9	4.2	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3053)
FliD_N	PF02465.18	gi|564290040|ref|YP_008876325.1|	-	3.6	8.3	11.5	4.2e+03	-1.5	11.6	3.5	1	1	0	1	1	0	0	Flagellar	hook-associated	protein	2	N-terminus
DUF4972	PF16342.5	gi|564290040|ref|YP_008876325.1|	-	3.7	7.3	12.3	9.7	5.9	3.2	3.5	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4972)
Rho_Binding	PF08912.11	gi|564290040|ref|YP_008876325.1|	-	3.9	8.4	30.2	55	4.7	8.7	4.6	1	1	2	3	3	3	0	Rho	Binding
HAUS6_N	PF14661.6	gi|564290040|ref|YP_008876325.1|	-	4	7.0	18.9	9.5e+03	-4.1	18.9	2.8	1	1	0	1	1	0	0	HAUS	augmin-like	complex	subunit	6	N-terminus
bZIP_Maf	PF03131.17	gi|564290040|ref|YP_008876325.1|	-	4	8.0	27.2	20	5.8	0.6	4.5	1	1	2	4	4	4	0	bZIP	Maf	transcription	factor
dCache_2	PF08269.11	gi|564290040|ref|YP_008876325.1|	-	4.5	6.4	12.9	2.6	7.1	0.4	2.2	2	0	0	2	2	2	0	Cache	domain
KLRAQ	PF10205.9	gi|564290040|ref|YP_008876325.1|	-	4.7	7.5	25.3	0.87	9.9	4.8	3.3	1	1	2	3	3	3	0	Predicted	coiled-coil	domain-containing	protein
USP8_interact	PF08941.10	gi|564290040|ref|YP_008876325.1|	-	4.8	6.9	13.2	3.9	7.3	0.3	2.9	1	1	1	2	2	2	0	USP8	interacting
Nnf1	PF03980.14	gi|564290040|ref|YP_008876325.1|	-	4.9	7.6	32.4	1.7	9.1	0.8	4.8	1	1	2	3	3	2	0	Nnf1
Troponin	PF00992.20	gi|564290040|ref|YP_008876325.1|	-	5.1	7.4	28.2	0.18	12.1	7.9	3.1	1	1	2	3	3	3	0	Troponin
Yuri_gagarin	PF15934.5	gi|564290040|ref|YP_008876325.1|	-	5.3	6.8	22.9	8.2	6.2	11.4	2.3	1	1	1	2	2	2	0	Yuri	gagarin
TraF_2	PF13729.6	gi|564290040|ref|YP_008876325.1|	-	5.4	6.3	25.0	0.089	12.1	3.1	3.3	1	1	2	3	3	3	0	F	plasmid	transfer	operon,	TraF,	protein
Sulfatase_C	PF14707.6	gi|564290040|ref|YP_008876325.1|	-	5.4	7.8	7.0	24	5.7	0.1	2.8	1	1	0	2	2	2	0	C-terminal	region	of	aryl-sulfatase
GCN5L1	PF06320.13	gi|564290040|ref|YP_008876325.1|	-	5.5	7.2	17.9	0.3	11.2	1.9	2.4	1	1	1	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
Striatin	PF08232.12	gi|564290040|ref|YP_008876325.1|	-	5.7	7.5	19.0	1.2	9.7	1.5	2.3	1	1	1	2	2	2	0	Striatin	family
FAP206	PF12018.8	gi|564290040|ref|YP_008876325.1|	-	5.7	6.3	10.6	3	7.3	5.5	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function
DLP_helical	PF18709.1	gi|564290040|ref|YP_008876325.1|	-	6.4	5.9	22.4	4.7	6.3	3.0	3.1	1	1	2	3	3	3	0	Dynamin-like	helical	domain
Phlebovirus_NSM	PF07246.11	gi|564290040|ref|YP_008876325.1|	-	6.5	6.0	20.2	3.6	6.9	4.3	3.1	1	1	2	3	3	3	0	Phlebovirus	nonstructural	protein	NS-M
V-SNARE_C	PF12352.8	gi|564290040|ref|YP_008876325.1|	-	6.6	7.1	17.1	3.3	8.1	2.6	3.6	2	2	2	4	4	2	0	Snare	region	anchored	in	the	vesicle	membrane	C-terminus
UPF0449	PF15136.6	gi|564290040|ref|YP_008876325.1|	-	6.6	7.3	30.7	6.6	7.3	2.2	5.0	1	1	4	5	5	5	0	Uncharacterised	protein	family	UPF0449
Cortex-I_coil	PF09304.10	gi|564290040|ref|YP_008876325.1|	-	6.9	6.9	28.7	10	6.4	8.6	3.0	1	1	2	3	3	3	0	Cortexillin	I,	coiled	coil
DUF4349	PF14257.6	gi|564290040|ref|YP_008876325.1|	-	7.2	6.0	32.9	12	5.3	12.2	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4349)
ZapD	PF07072.11	gi|564290040|ref|YP_008876325.1|	-	7.8	6.2	14.8	7.6	6.2	0.7	2.6	1	1	0	2	2	2	0	Cell	division	protein
DUF4559	PF15112.6	gi|564290040|ref|YP_008876325.1|	-	7.8	6.1	21.2	7.8	6.1	10.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4559)
Sec3_C	PF09763.9	gi|564290040|ref|YP_008876325.1|	-	8.8	4.6	17.4	0.33	9.3	1.8	2.4	1	1	0	2	2	2	0	Exocyst	complex	component	Sec3
XRCC4	PF06632.12	gi|564290040|ref|YP_008876325.1|	-	9.3	5.0	26.5	21	3.8	2.3	2.8	1	1	2	3	3	3	0	DNA	double-strand	break	repair	and	V(D)J	recombination	protein	XRCC4
MIP-T3_C	PF17749.1	gi|564290040|ref|YP_008876325.1|	-	9.7	6.1	25.0	3.8	7.5	4.9	3.1	1	1	1	3	3	3	0	Microtubule-binding	protein	MIP-T3	C-terminal	region
PEP-utilisers_N	PF05524.13	gi|564290041|ref|YP_008876326.1|	-	0.13	12.4	3.9	1.5	9.0	0.1	2.7	3	0	0	3	3	3	0	PEP-utilising	enzyme,	N-terminal
Phage_holin_3_6	PF07332.11	gi|564290041|ref|YP_008876326.1|	-	0.15	12.2	5.4	0.076	13.0	1.1	2.1	2	0	0	2	2	2	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
CnrY	PF17524.2	gi|564290041|ref|YP_008876326.1|	-	0.15	12.3	0.5	0.34	11.1	0.5	1.6	1	0	0	1	1	1	0	Anti-sigma	factor	CnrY
AAA_3	PF07726.11	gi|564290042|ref|YP_008876327.1|	-	1.5e-61	206.0	0.3	2.9e-61	205.1	0.3	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|564290042|ref|YP_008876327.1|	-	1.1e-20	73.2	3.5	2.1e-20	72.3	3.5	1.5	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|564290042|ref|YP_008876327.1|	-	1.2e-11	44.7	0.0	2e-11	44.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
MCM	PF00493.23	gi|564290042|ref|YP_008876327.1|	-	2.2e-07	30.2	0.0	3.1e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
AAA	PF00004.29	gi|564290042|ref|YP_008876327.1|	-	9.4e-07	29.3	0.0	2e-06	28.2	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|564290042|ref|YP_008876327.1|	-	0.00031	20.5	0.0	0.0019	17.9	0.0	2.0	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|564290042|ref|YP_008876327.1|	-	0.0005	19.9	0.0	0.0086	15.8	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|564290042|ref|YP_008876327.1|	-	0.0088	15.4	0.0	0.22	10.9	0.0	2.2	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_2	PF07724.14	gi|564290042|ref|YP_008876327.1|	-	0.023	14.8	0.1	0.096	12.8	0.0	2.0	1	1	1	2	2	2	0	AAA	domain	(Cdc48	subfamily)
AAA_19	PF13245.6	gi|564290042|ref|YP_008876327.1|	-	0.028	14.8	0.0	3.8	7.8	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_lid_8	PF17868.1	gi|564290042|ref|YP_008876327.1|	-	0.11	12.4	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	AAA	lid	domain
Transposase_20	PF02371.16	gi|564290042|ref|YP_008876327.1|	-	0.14	12.5	0.0	0.34	11.3	0.0	1.6	1	0	0	1	1	1	0	Transposase	IS116/IS110/IS902	family
DUF58	PF01882.18	gi|564290043|ref|YP_008876328.1|	-	6.5e-20	71.2	0.4	4.5e-19	68.5	0.0	2.5	2	1	0	2	2	2	1	Protein	of	unknown	function	DUF58
VWA_2	PF13519.6	gi|564290043|ref|YP_008876328.1|	-	4.1e-07	30.6	0.0	1.1e-06	29.3	0.0	1.7	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.14	gi|564290043|ref|YP_008876328.1|	-	1.7e-06	27.6	0.1	3.8e-06	26.4	0.1	1.6	1	1	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
Glycos_transf_2	PF00535.26	gi|564290043|ref|YP_008876328.1|	-	0.11	12.3	0.0	0.31	10.9	0.0	1.8	1	1	0	1	1	1	0	Glycosyl	transferase	family	2
VWA	PF00092.28	gi|564290043|ref|YP_008876328.1|	-	0.13	12.5	0.0	0.24	11.7	0.0	1.4	1	0	0	1	1	1	0	von	Willebrand	factor	type	A	domain
PyrI	PF01948.18	gi|564290044|ref|YP_008876329.1|	-	1.6e-34	118.0	0.3	2e-34	117.7	0.3	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.15	gi|564290044|ref|YP_008876329.1|	-	2.5e-13	49.7	0.1	4e-13	49.0	0.1	1.3	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
OTCace_N	PF02729.21	gi|564290045|ref|YP_008876330.1|	-	4.7e-42	143.5	0.0	1.3e-41	142.0	0.0	1.7	2	0	0	2	2	2	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|564290045|ref|YP_008876330.1|	-	7.6e-30	104.1	0.0	1.1e-29	103.5	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
FTP	PF07504.13	gi|564290045|ref|YP_008876330.1|	-	0.11	12.4	0.1	0.22	11.4	0.1	1.5	1	0	0	1	1	1	0	Fungalysin/Thermolysin	Propeptide	Motif
DUF2586	PF10758.9	gi|564290045|ref|YP_008876330.1|	-	0.13	11.4	0.0	0.18	10.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2586)
VCBS	PF13517.6	gi|564290046|ref|YP_008876331.1|	-	4.7e-24	84.7	26.3	3.6e-10	40.3	3.3	6.0	2	2	4	6	6	6	6	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
FG-GAP	PF01839.23	gi|564290046|ref|YP_008876331.1|	-	2.4e-21	75.5	26.3	0.00083	19.4	0.3	7.3	7	0	0	7	7	7	7	FG-GAP	repeat
TcdB_toxin_midN	PF12256.8	gi|564290046|ref|YP_008876331.1|	-	0.00088	18.7	10.6	1.9	7.8	0.0	5.9	6	1	1	7	7	7	3	Insecticide	toxin	TcdB	middle/N-terminal	region
BBS2_Mid	PF14783.6	gi|564290046|ref|YP_008876331.1|	-	0.47	10.5	3.1	81	3.3	0.0	4.4	4	1	1	5	5	5	0	Ciliary	BBSome	complex	subunit	2,	middle	region
PliI	PF16743.5	gi|564290046|ref|YP_008876331.1|	-	1.8	8.3	9.2	79	3.0	0.7	5.0	5	1	1	6	6	6	0	Periplasmic	lysozyme	inhibitor	of	I-type	lysozyme
Itfg2	PF15907.5	gi|564290046|ref|YP_008876331.1|	-	2.7	7.0	13.4	1.6	7.7	1.2	4.0	3	1	2	5	5	5	0	Integrin-alpha	FG-GAP	repeat-containing	protein	2
CbiA	PF01656.23	gi|564290047|ref|YP_008876332.1|	-	3.7e-11	43.2	0.1	3.7e-11	43.2	0.1	1.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|564290047|ref|YP_008876332.1|	-	3.6e-07	29.9	0.0	1.3e-05	24.9	0.0	2.2	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
AAA_31	PF13614.6	gi|564290047|ref|YP_008876332.1|	-	2.3e-06	27.6	0.0	1.3e-05	25.2	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|564290047|ref|YP_008876332.1|	-	7.1e-06	25.6	2.4	0.0045	16.5	0.4	2.3	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|564290047|ref|YP_008876332.1|	-	0.00024	20.4	0.1	0.0004	19.7	0.1	1.4	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|564290047|ref|YP_008876332.1|	-	0.00068	19.0	0.1	0.00091	18.6	0.1	1.2	1	0	0	1	1	1	1	ATPase	MipZ
Zeta_toxin	PF06414.12	gi|564290047|ref|YP_008876332.1|	-	0.023	14.0	0.4	0.039	13.2	0.1	1.6	2	0	0	2	2	2	0	Zeta	toxin
VirC1	PF07015.11	gi|564290047|ref|YP_008876332.1|	-	0.034	13.4	0.0	0.51	9.6	0.1	2.2	2	0	0	2	2	2	0	VirC1	protein
AAA_33	PF13671.6	gi|564290047|ref|YP_008876332.1|	-	0.81	9.8	3.0	2.4	8.3	3.0	1.9	1	1	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|564290048|ref|YP_008876333.1|	-	1.8e-07	30.8	0.0	0.0064	15.9	0.0	2.1	1	1	1	2	2	2	2	KaiC
Importin_rep_3	PF18806.1	gi|564290048|ref|YP_008876333.1|	-	0.06	13.4	0.0	0.12	12.4	0.0	1.5	1	0	0	1	1	1	0	Importin	13	repeat
Trigger_N	PF05697.13	gi|564290048|ref|YP_008876333.1|	-	0.14	12.5	0.0	0.23	11.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	trigger	factor	protein	(TF)
DUF1829	PF08862.10	gi|564290048|ref|YP_008876333.1|	-	0.19	12.2	0.0	0.32	11.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF1829
FKBP_C	PF00254.28	gi|564290050|ref|YP_008876335.1|	-	6e-06	26.5	0.3	1.5e-05	25.2	0.2	1.8	1	1	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Sporozoite_P67	PF05642.11	gi|564290050|ref|YP_008876335.1|	-	0.045	11.9	0.8	0.075	11.1	0.8	1.3	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
ScdA_N	PF04405.14	gi|564290050|ref|YP_008876335.1|	-	0.12	12.1	0.6	0.35	10.5	0.6	1.8	1	0	0	1	1	1	0	Domain	of	Unknown	function	(DUF542)
PALP	PF00291.25	gi|564290051|ref|YP_008876336.1|	-	1e-72	245.0	5.7	1.2e-72	244.8	5.7	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
CYTH	PF01928.21	gi|564290052|ref|YP_008876337.1|	-	2.1e-38	132.0	6.1	2.4e-38	131.8	6.1	1.0	1	0	0	1	1	1	1	CYTH	domain
Acyl-ACP_TE	PF01643.17	gi|564290052|ref|YP_008876337.1|	-	0.079	12.2	0.0	2.8	7.1	0.0	2.2	2	0	0	2	2	2	0	Acyl-ACP	thioesterase
AdoMet_Synthase	PF01941.19	gi|564290053|ref|YP_008876338.1|	-	5.3e-171	568.8	4.7	6e-171	568.6	4.7	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
S-AdoMet_synt_N	PF00438.20	gi|564290053|ref|YP_008876338.1|	-	0.042	14.5	1.4	0.26	12.0	0.0	2.7	2	1	0	2	2	2	0	S-adenosylmethionine	synthetase,	N-terminal	domain
Asp23	PF03780.13	gi|564290053|ref|YP_008876338.1|	-	1.5	9.2	9.5	2.7	8.5	1.5	3.5	2	1	0	2	2	2	0	Asp23	family,	cell	envelope-related	function
ThiI	PF02568.14	gi|564290054|ref|YP_008876339.1|	-	1e-43	149.2	0.0	1.4e-43	148.7	0.0	1.2	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.17	gi|564290054|ref|YP_008876339.1|	-	6.7e-12	45.7	0.0	1e-11	45.1	0.0	1.3	1	0	0	1	1	1	1	THUMP	domain
QueC	PF06508.13	gi|564290054|ref|YP_008876339.1|	-	0.0092	15.5	0.0	0.17	11.4	0.0	2.2	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|564290054|ref|YP_008876339.1|	-	0.015	14.1	0.0	0.023	13.5	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
ATP_bind_3	PF01171.20	gi|564290054|ref|YP_008876339.1|	-	0.13	12.0	0.0	0.51	10.1	0.0	1.9	1	1	0	1	1	1	0	PP-loop	family
PALP	PF00291.25	gi|564290056|ref|YP_008876341.1|	-	2.3e-63	214.4	0.1	2.8e-63	214.1	0.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ADH_zinc_N	PF00107.26	gi|564290056|ref|YP_008876341.1|	-	0.0014	18.6	0.0	0.0036	17.3	0.0	1.7	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
NikR_C	PF08753.11	gi|564290057|ref|YP_008876342.1|	-	6.7e-20	71.0	1.1	6.7e-20	71.0	1.1	1.5	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|564290057|ref|YP_008876342.1|	-	4.5e-07	29.6	0.0	9.3e-07	28.6	0.0	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|564290057|ref|YP_008876342.1|	-	0.046	13.9	0.0	0.066	13.4	0.0	1.3	1	0	0	1	1	1	0	Ribbon-Helix-Helix	transcriptional	regulator	family
VapB_antitoxin	PF09957.9	gi|564290057|ref|YP_008876342.1|	-	0.053	13.4	0.0	0.093	12.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
TetR_C_27	PF17935.1	gi|564290057|ref|YP_008876342.1|	-	0.068	13.2	0.5	0.099	12.7	0.5	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HicB_lk_antitox	PF15919.5	gi|564290057|ref|YP_008876342.1|	-	0.08	13.1	0.0	0.14	12.3	0.0	1.4	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
Osmo_MPGsynth	PF09488.10	gi|564290057|ref|YP_008876342.1|	-	0.084	11.6	0.0	0.093	11.4	0.0	1.1	1	0	0	1	1	1	0	Mannosyl-3-phosphoglycerate	synthase	(osmo_MPGsynth)
eIF-1a	PF01176.19	gi|564290058|ref|YP_008876343.1|	-	6.8e-21	73.8	0.1	8.1e-21	73.6	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
UPF0058	PF01893.16	gi|564290059|ref|YP_008876344.1|	-	1.9e-20	72.9	1.8	2e-20	72.9	1.8	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0058
PilS	PF08805.11	gi|564290063|ref|YP_008876348.1|	-	0.011	15.5	3.5	0.013	15.3	1.9	1.9	2	0	0	2	2	2	0	PilS	N	terminal
SKI	PF01202.22	gi|564290063|ref|YP_008876348.1|	-	0.072	13.2	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Shikimate	kinase
DUF3520	PF12034.8	gi|564290064|ref|YP_008876349.1|	-	0.11	12.6	0.1	0.15	12.2	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3520)
T2SSF	PF00482.23	gi|564290066|ref|YP_008876351.1|	-	3.4e-28	98.1	6.7	1.2e-16	60.9	0.8	3.2	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
Snf7	PF03357.21	gi|564290066|ref|YP_008876351.1|	-	0.014	15.0	0.1	0.039	13.6	0.1	1.7	1	0	0	1	1	1	0	Snf7
DUF1461	PF07314.11	gi|564290066|ref|YP_008876351.1|	-	0.016	15.1	1.0	0.064	13.2	0.4	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1461)
T2SSE	PF00437.20	gi|564290067|ref|YP_008876352.1|	-	4.9e-43	147.1	0.0	1e-42	146.1	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.6	gi|564290067|ref|YP_008876352.1|	-	0.0032	17.2	0.1	0.0077	15.9	0.1	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Aminotran_1_2	PF00155.21	gi|564290068|ref|YP_008876353.1|	-	3.8e-67	227.0	0.0	4.2e-67	226.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|564290068|ref|YP_008876353.1|	-	3.9e-05	22.8	0.0	0.00024	20.2	0.0	1.9	2	0	0	2	2	2	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|564290068|ref|YP_008876353.1|	-	7.7e-05	22.1	0.0	0.00012	21.4	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
LCIB_C_CA	PF18599.1	gi|564290068|ref|YP_008876353.1|	-	0.044	13.1	0.0	0.07	12.4	0.0	1.2	1	0	0	1	1	1	0	Limiting	CO2-inducible	proteins	B/C	beta	carbonyic	anhydrases
AsnC_trans_reg	PF01037.21	gi|564290069|ref|YP_008876354.1|	-	7e-16	58.0	0.6	1.5e-15	56.9	0.1	1.7	2	0	0	2	2	2	1	Lrp/AsnC	ligand	binding	domain
HTH_24	PF13412.6	gi|564290069|ref|YP_008876354.1|	-	2.6e-09	36.5	0.2	9.7e-09	34.7	0.1	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564290069|ref|YP_008876354.1|	-	2.9e-06	27.0	0.2	8e-06	25.6	0.1	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564290069|ref|YP_008876354.1|	-	2.9e-05	24.0	0.1	8e-05	22.6	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564290069|ref|YP_008876354.1|	-	0.00093	19.0	0.0	0.0017	18.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564290069|ref|YP_008876354.1|	-	0.0035	17.2	0.1	0.0055	16.6	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|564290069|ref|YP_008876354.1|	-	0.0053	17.2	0.0	0.016	15.6	0.0	1.8	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.6	gi|564290069|ref|YP_008876354.1|	-	0.0067	16.4	0.0	0.015	15.3	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_23	PF13384.6	gi|564290069|ref|YP_008876354.1|	-	0.0097	15.7	0.0	0.032	14.1	0.1	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_29	PF13551.6	gi|564290069|ref|YP_008876354.1|	-	0.012	15.6	0.0	0.02	14.9	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_DeoR	PF08220.12	gi|564290069|ref|YP_008876354.1|	-	0.02	14.6	0.0	0.034	13.9	0.0	1.3	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290069|ref|YP_008876354.1|	-	0.032	14.0	0.0	0.055	13.3	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HU-DNA_bdg	PF14848.6	gi|564290069|ref|YP_008876354.1|	-	0.43	10.6	2.4	2.6	8.1	0.2	2.4	2	1	1	3	3	3	0	DNA-binding	domain
FUR	PF01475.19	gi|564290070|ref|YP_008876355.1|	-	0.16	12.1	0.0	0.2	11.8	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
AhpC-TSA	PF00578.21	gi|564290071|ref|YP_008876356.1|	-	7.2e-18	64.7	0.0	9.8e-18	64.3	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564290071|ref|YP_008876356.1|	-	9.4e-15	54.6	0.0	1.3e-14	54.2	0.0	1.1	1	0	0	1	1	1	1	Redoxin
Thioredoxin_2	PF13098.6	gi|564290071|ref|YP_008876356.1|	-	0.0033	17.9	0.1	0.0059	17.0	0.1	1.4	1	1	0	1	1	1	1	Thioredoxin-like	domain
T4_deiodinase	PF00837.17	gi|564290071|ref|YP_008876356.1|	-	0.031	13.6	0.0	0.041	13.2	0.0	1.2	1	0	0	1	1	1	0	Iodothyronine	deiodinase
Thioredoxin_8	PF13905.6	gi|564290071|ref|YP_008876356.1|	-	0.035	14.4	0.0	0.053	13.9	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin-like
Thioredoxin	PF00085.20	gi|564290071|ref|YP_008876356.1|	-	0.042	13.8	0.0	0.55	10.2	0.0	2.0	1	1	1	2	2	2	0	Thioredoxin
TraF	PF13728.6	gi|564290071|ref|YP_008876356.1|	-	0.07	12.9	0.0	0.16	11.8	0.0	1.7	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
PBP-Tp47_a	PF14889.6	gi|564290071|ref|YP_008876356.1|	-	0.15	11.7	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	Penicillin-binding	protein	Tp47	domain	a
HTH_20	PF12840.7	gi|564290073|ref|YP_008876359.1|	-	0.056	13.5	0.1	5	7.3	0.1	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
Methyltransf_3	PF01596.17	gi|564290074|ref|YP_008876360.1|	-	9.5e-21	73.9	0.0	1.2e-20	73.6	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_24	PF13578.6	gi|564290074|ref|YP_008876360.1|	-	4.2e-13	50.2	0.1	6.8e-13	49.6	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290074|ref|YP_008876360.1|	-	2.1e-08	34.1	0.0	2.5e-08	33.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|564290074|ref|YP_008876360.1|	-	2.4e-05	24.2	0.0	3.5e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.14	gi|564290074|ref|YP_008876360.1|	-	0.002	17.7	0.0	0.0029	17.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.18	gi|564290074|ref|YP_008876360.1|	-	0.0055	16.1	0.0	0.0075	15.6	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|564290074|ref|YP_008876360.1|	-	0.01	16.6	0.0	0.016	15.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.20	gi|564290074|ref|YP_008876360.1|	-	0.14	11.5	0.0	0.18	11.0	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
CheC	PF04509.12	gi|564290075|ref|YP_008876361.1|	-	1.1e-14	54.0	1.7	1.3e-14	53.8	0.4	1.8	2	0	0	2	2	2	1	CheC-like	family
CheX	PF13690.6	gi|564290075|ref|YP_008876361.1|	-	4.1e-05	23.7	1.3	0.00011	22.3	0.1	2.1	2	1	0	2	2	2	1	Chemotaxis	phosphatase	CheX
AMP-binding	PF00501.28	gi|564290076|ref|YP_008876362.1|	-	5.9e-90	301.9	0.0	6.8e-90	301.7	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564290076|ref|YP_008876362.1|	-	5.5e-19	68.9	0.0	1.3e-18	67.8	0.0	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
TAT_signal	PF10518.9	gi|564290077|ref|YP_008876363.1|	-	0.19	11.6	2.7	0.33	10.9	2.7	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Acyl-CoA_dh_1	PF00441.24	gi|564290078|ref|YP_008876364.1|	-	5.8e-41	140.2	4.0	5.8e-41	140.2	4.0	1.6	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564290078|ref|YP_008876364.1|	-	1.5e-26	92.4	0.0	4.6e-26	90.9	0.0	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.16	gi|564290078|ref|YP_008876364.1|	-	1.2e-21	77.4	2.5	1.2e-21	77.4	2.5	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.11	gi|564290078|ref|YP_008876364.1|	-	3.1e-18	66.3	4.9	7.5e-18	65.1	4.1	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Cdc6_C	PF09079.11	gi|564290079|ref|YP_008876365.1|	-	3.9e-15	55.6	0.2	7.9e-15	54.6	0.2	1.5	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|564290079|ref|YP_008876365.1|	-	1.5e-12	47.9	0.0	7.3e-12	45.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|564290079|ref|YP_008876365.1|	-	7e-08	33.0	0.0	6.2e-07	30.0	0.0	2.5	2	2	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.12	gi|564290079|ref|YP_008876365.1|	-	8.5e-07	29.0	0.0	1.5e-06	28.3	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
ATPase_2	PF01637.18	gi|564290079|ref|YP_008876365.1|	-	1.4e-05	25.1	0.0	4.2e-05	23.6	0.0	1.7	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA	PF00004.29	gi|564290079|ref|YP_008876365.1|	-	3.1e-05	24.4	0.0	7.7e-05	23.1	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|564290079|ref|YP_008876365.1|	-	4.7e-05	22.9	0.0	0.00011	21.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	TniB	protein
PadR	PF03551.14	gi|564290079|ref|YP_008876365.1|	-	0.00015	21.7	0.2	0.00033	20.6	0.2	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
KAP_NTPase	PF07693.14	gi|564290079|ref|YP_008876365.1|	-	0.012	14.9	0.0	0.071	12.3	0.0	1.8	1	1	1	2	2	2	0	KAP	family	P-loop	domain
Sigma54_activat	PF00158.26	gi|564290079|ref|YP_008876365.1|	-	0.016	14.9	0.0	0.35	10.5	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
PSD5	PF07637.11	gi|564290079|ref|YP_008876365.1|	-	0.04	14.3	0.6	1.2	9.6	0.1	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1595)
AAA_18	PF13238.6	gi|564290079|ref|YP_008876365.1|	-	0.044	14.3	0.0	0.097	13.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|564290079|ref|YP_008876365.1|	-	0.048	13.2	0.0	0.1	12.1	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_5	PF07728.14	gi|564290079|ref|YP_008876365.1|	-	0.06	13.4	0.0	0.71	9.9	0.0	2.4	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
TrmB	PF01978.19	gi|564290079|ref|YP_008876365.1|	-	0.087	12.7	0.1	0.22	11.4	0.1	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DEAD	PF00270.29	gi|564290079|ref|YP_008876365.1|	-	0.1	12.4	0.0	2.4	7.9	0.0	2.3	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
RNA_helicase	PF00910.22	gi|564290079|ref|YP_008876365.1|	-	0.11	12.9	0.0	0.23	11.8	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_23	PF13476.6	gi|564290079|ref|YP_008876365.1|	-	0.12	12.9	0.3	0.52	10.8	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
DUF815	PF05673.13	gi|564290079|ref|YP_008876365.1|	-	0.12	11.5	0.0	0.21	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.22	gi|564290079|ref|YP_008876365.1|	-	0.12	11.5	0.0	0.22	10.7	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
Lactamase_B	PF00753.27	gi|564290080|ref|YP_008876366.1|	-	2.4e-20	73.4	6.1	3.2e-20	73.0	6.1	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|564290080|ref|YP_008876366.1|	-	2.2e-08	33.9	0.2	3.5e-08	33.2	0.2	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|564290080|ref|YP_008876366.1|	-	0.027	14.3	0.3	0.053	13.4	0.3	1.5	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Myosin_N	PF02736.19	gi|564290081|ref|YP_008876367.1|	-	0.075	12.9	0.2	0.16	11.9	0.0	1.6	2	0	0	2	2	2	0	Myosin	N-terminal	SH3-like	domain
DICT	PF10069.9	gi|564290082|ref|YP_008876368.1|	-	1.2e-17	63.9	0.0	2.3e-17	62.9	0.0	1.4	1	0	0	1	1	1	1	Sensory	domain	in	DIguanylate	Cyclases	and	Two-component	system
CHASE6_C	PF17150.4	gi|564290082|ref|YP_008876368.1|	-	0.12	13.0	0.1	0.33	11.6	0.1	1.7	1	0	0	1	1	1	0	C-terminal	domain	of	two-partite	extracellular	sensor	domain
POR_N	PF01855.19	gi|564290083|ref|YP_008876369.1|	-	1.2e-48	165.9	0.3	2.4e-48	164.9	0.3	1.5	1	1	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.18	gi|564290083|ref|YP_008876369.1|	-	4.1e-45	154.0	0.0	2.1e-44	151.7	0.0	2.1	2	0	0	2	2	2	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
PFOR_II	PF17147.4	gi|564290083|ref|YP_008876369.1|	-	1.7e-09	37.9	0.0	2.9e-09	37.1	0.0	1.4	1	0	0	1	1	1	1	Pyruvate:ferredoxin	oxidoreductase	core	domain	II
TPP_enzyme_N	PF02776.18	gi|564290083|ref|YP_008876369.1|	-	0.0017	18.0	0.1	0.0037	16.9	0.1	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
adh_short	PF00106.25	gi|564290083|ref|YP_008876369.1|	-	0.18	11.3	0.1	2.5	7.5	0.0	2.3	2	0	0	2	2	2	0	short	chain	dehydrogenase
TPP_enzyme_C	PF02775.21	gi|564290084|ref|YP_008876370.1|	-	6.8e-31	107.1	0.1	1e-30	106.5	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.8	gi|564290084|ref|YP_008876370.1|	-	0.0033	17.5	0.1	0.0083	16.2	0.1	1.8	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
HTH_24	PF13412.6	gi|564290085|ref|YP_008876371.1|	-	5.2e-15	54.7	0.1	7.8e-15	54.2	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
AsnC_trans_reg	PF01037.21	gi|564290085|ref|YP_008876371.1|	-	3.9e-12	46.0	0.0	6.5e-12	45.2	0.0	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
HTH_AsnC-type	PF13404.6	gi|564290085|ref|YP_008876371.1|	-	2.9e-10	39.8	0.1	5.1e-10	39.0	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564290085|ref|YP_008876371.1|	-	3.5e-08	33.3	0.0	6.8e-08	32.3	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564290085|ref|YP_008876371.1|	-	1.3e-07	31.5	0.0	2.3e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290085|ref|YP_008876371.1|	-	3.2e-07	30.0	0.0	5.3e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|564290085|ref|YP_008876371.1|	-	6.9e-07	29.4	0.3	1.4e-06	28.4	0.3	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.6	gi|564290085|ref|YP_008876371.1|	-	1.3e-06	28.0	0.1	2.2e-06	27.3	0.1	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_DeoR	PF08220.12	gi|564290085|ref|YP_008876371.1|	-	2.4e-06	27.2	0.0	3.9e-06	26.5	0.0	1.3	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564290085|ref|YP_008876371.1|	-	3.8e-06	26.7	0.0	5.6e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564290085|ref|YP_008876371.1|	-	5.8e-06	26.1	0.0	1.8e-05	24.5	0.0	1.7	2	0	0	2	2	2	1	MarR	family
HTH_36	PF13730.6	gi|564290085|ref|YP_008876371.1|	-	2.7e-05	24.0	0.0	4.5e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|564290085|ref|YP_008876371.1|	-	5.8e-05	22.9	0.0	9.8e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Rrf2	PF02082.20	gi|564290085|ref|YP_008876371.1|	-	7.2e-05	23.1	0.0	0.00012	22.3	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
TrmB	PF01978.19	gi|564290085|ref|YP_008876371.1|	-	9.5e-05	22.2	0.2	0.00015	21.6	0.2	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.6	gi|564290085|ref|YP_008876371.1|	-	0.00017	21.7	0.0	0.00033	20.7	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|564290085|ref|YP_008876371.1|	-	0.0006	19.8	0.0	0.00095	19.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
FaeA	PF04703.12	gi|564290085|ref|YP_008876371.1|	-	0.00077	19.8	0.1	0.0012	19.2	0.1	1.2	1	0	0	1	1	1	1	FaeA-like	protein
Sigma70_r4_2	PF08281.12	gi|564290085|ref|YP_008876371.1|	-	0.001	18.7	0.1	0.0018	17.9	0.1	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|564290085|ref|YP_008876371.1|	-	0.0011	18.9	0.0	0.002	18.1	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|564290085|ref|YP_008876371.1|	-	0.0013	18.4	0.1	0.0026	17.3	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_6	PF01418.17	gi|564290085|ref|YP_008876371.1|	-	0.0046	16.9	0.0	0.0084	16.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
HTH_10	PF04967.12	gi|564290085|ref|YP_008876371.1|	-	0.0047	16.7	0.1	0.0096	15.7	0.1	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|564290085|ref|YP_008876371.1|	-	0.016	14.7	0.2	0.036	13.6	0.2	1.7	2	0	0	2	2	1	0	Sigma-70,	region	4
HTH_47	PF16221.5	gi|564290085|ref|YP_008876371.1|	-	0.019	14.5	0.0	0.046	13.3	0.0	1.7	2	0	0	2	2	2	0	winged	helix-turn-helix
LacI	PF00356.21	gi|564290085|ref|YP_008876371.1|	-	0.028	14.2	0.0	0.17	11.7	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
HTH_27	PF13463.6	gi|564290085|ref|YP_008876371.1|	-	0.03	14.8	0.1	0.088	13.3	0.0	1.8	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.17	gi|564290085|ref|YP_008876371.1|	-	0.041	13.7	0.0	0.079	12.8	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_45	PF14947.6	gi|564290085|ref|YP_008876371.1|	-	0.045	13.7	0.0	0.079	13.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_Mga	PF08280.11	gi|564290085|ref|YP_008876371.1|	-	0.061	13.4	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_1	PF00126.27	gi|564290085|ref|YP_008876371.1|	-	0.063	13.2	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TetR_N	PF00440.23	gi|564290085|ref|YP_008876371.1|	-	0.063	13.1	0.1	0.12	12.2	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_30	PF13556.6	gi|564290085|ref|YP_008876371.1|	-	0.066	13.0	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
DUF4978	PF16349.5	gi|564290085|ref|YP_008876371.1|	-	0.076	12.6	0.0	0.088	12.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4978)
MerR	PF00376.23	gi|564290085|ref|YP_008876371.1|	-	0.1	12.4	0.0	0.2	11.5	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
SLH	PF00395.20	gi|564290085|ref|YP_008876371.1|	-	0.11	12.5	0.0	0.22	11.6	0.0	1.5	1	0	0	1	1	1	0	S-layer	homology	domain
Phage_NinH	PF06322.11	gi|564290085|ref|YP_008876371.1|	-	0.12	12.3	0.0	0.59	10.1	0.0	1.9	2	0	0	2	2	2	0	Phage	NinH	protein
RPA_C	PF08784.11	gi|564290085|ref|YP_008876371.1|	-	0.13	12.9	0.0	0.23	12.1	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
TnsD	PF15978.5	gi|564290085|ref|YP_008876371.1|	-	0.16	10.9	0.1	0.21	10.5	0.1	1.1	1	0	0	1	1	1	0	Tn7-like	transposition	protein	D
DHHA1	PF02272.19	gi|564290086|ref|YP_008876372.1|	-	2.5e-14	53.8	0.4	7.8e-14	52.3	0.4	1.8	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|564290086|ref|YP_008876372.1|	-	5.7e-12	45.8	0.1	1.6e-11	44.3	0.0	1.8	2	0	0	2	2	2	1	DHH	family
TrkA_N	PF02254.18	gi|564290086|ref|YP_008876372.1|	-	1.8e-11	44.3	0.2	6.6e-11	42.5	0.1	2.2	2	0	0	2	2	2	1	TrkA-N	domain
CBS	PF00571.28	gi|564290087|ref|YP_008876373.1|	-	6.2e-25	87.4	2.9	1.1e-11	45.0	0.1	2.6	2	0	0	2	2	2	2	CBS	domain
ParBc	PF02195.18	gi|564290087|ref|YP_008876373.1|	-	5.2e-10	39.5	0.1	2.2e-09	37.5	0.0	1.9	2	0	0	2	2	2	1	ParB-like	nuclease	domain
ParBc_2	PF08857.11	gi|564290087|ref|YP_008876373.1|	-	0.00015	21.9	0.1	0.0012	19.0	0.1	2.0	1	1	0	1	1	1	1	Putative	ParB-like	nuclease
DUF1015	PF06245.11	gi|564290087|ref|YP_008876373.1|	-	0.039	12.8	0.0	0.051	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1015)
MM_CoA_mutase	PF01642.22	gi|564290088|ref|YP_008876374.1|	-	2.3e-215	716.0	1.7	2.7e-215	715.8	1.7	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
VKG_Carbox	PF05090.14	gi|564290089|ref|YP_008876375.1|	-	1.3e-09	37.4	1.1	1.6e-09	37.1	1.1	1.1	1	0	0	1	1	1	1	Vitamin	K-dependent	gamma-carboxylase
LapA_dom	PF06305.11	gi|564290090|ref|YP_008876376.1|	-	0.028	14.2	0.6	0.028	14.2	0.6	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
SPC12	PF06645.13	gi|564290090|ref|YP_008876376.1|	-	0.22	11.6	0.1	0.22	11.6	0.1	2.2	2	1	0	2	2	2	0	Microsomal	signal	peptidase	12	kDa	subunit	(SPC12)
FeoB_C	PF07664.12	gi|564290090|ref|YP_008876376.1|	-	0.87	9.3	6.3	1.6	8.5	0.3	2.2	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
COX1	PF00115.20	gi|564290092|ref|YP_008876378.1|	-	6.8e-150	499.7	59.3	6.8e-150	499.7	59.3	1.5	2	0	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF3007	PF11460.8	gi|564290093|ref|YP_008876379.1|	-	0.021	15.0	0.4	0.026	14.7	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3007)
DUF485	PF04341.12	gi|564290093|ref|YP_008876379.1|	-	0.57	10.2	4.8	0.73	9.8	4.6	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF485
DUF2070	PF09843.9	gi|564290093|ref|YP_008876379.1|	-	0.66	8.2	3.5	0.76	8.0	3.5	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2070)
TadE	PF07811.12	gi|564290093|ref|YP_008876379.1|	-	2	8.7	8.5	0.41	11.0	0.4	2.2	2	0	0	2	2	2	0	TadE-like	protein
Cyt_c_ox_IV	PF12270.8	gi|564290094|ref|YP_008876380.1|	-	0.0099	16.0	2.2	0.0099	16.0	2.2	2.6	1	1	1	2	2	2	2	Cytochrome	c	oxidase	subunit	IV
MscS_porin	PF12795.7	gi|564290095|ref|YP_008876381.1|	-	0.00071	19.2	15.1	0.00071	19.2	15.1	2.6	3	0	0	3	3	2	1	Mechanosensitive	ion	channel	porin	domain
Wtap	PF17098.5	gi|564290095|ref|YP_008876381.1|	-	0.0014	18.6	6.0	0.0045	16.9	6.0	1.9	1	0	0	1	1	1	1	WTAP/Mum2p	family
DivIC	PF04977.15	gi|564290095|ref|YP_008876381.1|	-	0.0022	17.7	5.9	0.0056	16.4	5.9	1.7	1	0	0	1	1	1	1	Septum	formation	initiator
YabA	PF06156.13	gi|564290095|ref|YP_008876381.1|	-	0.0028	18.3	4.8	0.067	13.8	3.8	2.6	2	0	0	2	2	2	1	Initiation	control	protein	YabA
ADIP	PF11559.8	gi|564290095|ref|YP_008876381.1|	-	0.013	15.5	4.2	0.013	15.5	4.2	2.3	2	0	0	2	2	1	0	Afadin-	and	alpha	-actinin-Binding
MPS2	PF17060.5	gi|564290095|ref|YP_008876381.1|	-	0.021	14.1	2.3	0.036	13.3	2.3	1.3	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
RasGAP_C	PF03836.15	gi|564290095|ref|YP_008876381.1|	-	0.031	14.4	0.5	0.054	13.6	0.5	1.3	1	0	0	1	1	1	0	RasGAP	C-terminus
FapA	PF03961.13	gi|564290095|ref|YP_008876381.1|	-	0.039	12.6	0.8	0.058	12.0	0.8	1.2	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Spc7	PF08317.11	gi|564290095|ref|YP_008876381.1|	-	0.042	12.7	6.1	0.072	12.0	6.1	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Rootletin	PF15035.6	gi|564290095|ref|YP_008876381.1|	-	0.045	13.8	8.7	0.096	12.7	8.7	1.5	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Cnn_1N	PF07989.11	gi|564290095|ref|YP_008876381.1|	-	0.058	13.5	6.7	0.16	12.2	6.7	1.8	1	0	0	1	1	1	0	Centrosomin	N-terminal	motif	1
TMF_DNA_bd	PF12329.8	gi|564290095|ref|YP_008876381.1|	-	0.076	13.0	14.8	0.15	12.0	14.8	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
V-SNARE	PF05008.15	gi|564290095|ref|YP_008876381.1|	-	0.16	12.3	6.7	0.55	10.6	6.7	1.9	1	0	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
HAUS-augmin3	PF14932.6	gi|564290095|ref|YP_008876381.1|	-	0.17	11.4	7.7	0.34	10.4	7.7	1.4	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
Cep57_CLD_2	PF14197.6	gi|564290095|ref|YP_008876381.1|	-	0.23	11.6	11.4	0.59	10.3	11.4	1.7	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
CENP-F_leu_zip	PF10473.9	gi|564290095|ref|YP_008876381.1|	-	0.26	11.3	11.4	1.1	9.3	11.4	1.8	1	1	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Atg14	PF10186.9	gi|564290095|ref|YP_008876381.1|	-	0.29	10.2	8.3	0.012	14.8	2.2	1.6	2	0	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
UPF0242	PF06785.11	gi|564290095|ref|YP_008876381.1|	-	0.32	11.1	10.8	0.72	9.9	10.8	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
bZIP_1	PF00170.21	gi|564290095|ref|YP_008876381.1|	-	0.41	10.8	4.0	1.1	9.4	4.0	1.8	1	0	0	1	1	1	0	bZIP	transcription	factor
TolA_bind_tri	PF16331.5	gi|564290095|ref|YP_008876381.1|	-	0.44	10.6	10.4	1.5	8.9	10.4	1.9	1	1	0	1	1	1	0	TolA	binding	protein	trimerisation
DHR10	PF18595.1	gi|564290095|ref|YP_008876381.1|	-	0.47	10.5	13.7	1.5	8.9	13.7	1.8	1	0	0	1	1	1	0	Designed	helical	repeat	protein	10	domain
DUF4164	PF13747.6	gi|564290095|ref|YP_008876381.1|	-	0.48	10.7	14.7	1.6	9.0	14.7	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
DUF1664	PF07889.12	gi|564290095|ref|YP_008876381.1|	-	0.66	10.0	1.6	1.2	9.2	1.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
FlaC_arch	PF05377.11	gi|564290095|ref|YP_008876381.1|	-	0.97	9.9	7.2	8.2	6.9	3.5	2.6	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Spc24	PF08286.11	gi|564290095|ref|YP_008876381.1|	-	1.1	9.5	8.0	4.2	7.7	8.0	2.0	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF641	PF04859.12	gi|564290095|ref|YP_008876381.1|	-	1.3	9.3	9.4	2.9	8.2	3.1	2.5	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
DUF724	PF05266.14	gi|564290095|ref|YP_008876381.1|	-	1.5	8.6	5.5	3.4	7.4	5.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF3450	PF11932.8	gi|564290095|ref|YP_008876381.1|	-	3.1	7.0	12.3	0.029	13.7	4.1	1.7	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF3450)
Golgin_A5	PF09787.9	gi|564290095|ref|YP_008876381.1|	-	7.4	5.9	14.2	0.18	11.2	7.5	1.6	2	0	0	2	2	1	0	Golgin	subfamily	A	member	5
HTH_12	PF08461.10	gi|564290096|ref|YP_008876382.1|	-	0.0073	16.2	0.0	0.015	15.3	0.0	1.7	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_24	PF13412.6	gi|564290096|ref|YP_008876382.1|	-	0.0096	15.5	0.4	0.016	14.8	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564290096|ref|YP_008876382.1|	-	0.03	14.2	0.2	0.093	12.6	0.2	1.8	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564290096|ref|YP_008876382.1|	-	0.063	13.2	0.1	0.11	12.4	0.1	1.5	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF977	PF06163.11	gi|564290096|ref|YP_008876382.1|	-	0.08	12.9	0.0	0.09	12.7	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
HTH_IclR	PF09339.10	gi|564290096|ref|YP_008876382.1|	-	0.15	11.9	0.0	0.21	11.4	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
CLZ	PF16526.5	gi|564290096|ref|YP_008876382.1|	-	0.34	11.3	4.0	4.8	7.6	0.4	2.2	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
Adenylsucc_synt	PF00709.21	gi|564290097|ref|YP_008876383.1|	-	7.4e-154	512.7	0.0	8.5e-154	512.5	0.0	1.0	1	0	0	1	1	1	1	Adenylosuccinate	synthetase
Trm112p	PF03966.16	gi|564290098|ref|YP_008876384.1|	-	1.2e-10	41.7	1.0	2.3e-10	40.9	1.0	1.4	1	1	0	1	1	1	1	Trm112p-like	protein
zf-C2HE	PF16278.5	gi|564290098|ref|YP_008876384.1|	-	0.065	13.7	0.1	0.08	13.4	0.1	1.2	1	0	0	1	1	1	0	C2HE	/	C2H2	/	C2HC	zinc-binding	finger
CHRD	PF07452.12	gi|564290099|ref|YP_008876385.1|	-	0.12	13.4	0.2	0.21	12.6	0.2	1.5	1	1	0	1	1	1	0	CHRD	domain
EFF-AFF	PF14884.6	gi|564290099|ref|YP_008876385.1|	-	0.17	10.0	0.0	0.2	9.7	0.0	1.2	1	0	0	1	1	1	0	Type	I	membrane	glycoproteins	cell-cell	fusogen
DUF3094	PF11293.8	gi|564290099|ref|YP_008876385.1|	-	0.97	9.2	3.8	1.6	8.5	3.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3094)
DR2241	PF18069.1	gi|564290100|ref|YP_008876386.1|	-	4.2e-46	155.4	2.9	1.2e-45	153.9	0.9	2.5	2	0	0	2	2	2	1	DR2241	stabilising	domain
Fer4_23	PF18009.1	gi|564290100|ref|YP_008876386.1|	-	2.8e-28	98.2	0.3	5e-28	97.4	0.3	1.4	1	0	0	1	1	1	1	4Fe-4S	iron-sulfur	cluster	binding	domain
Peptidase_M48	PF01435.18	gi|564290101|ref|YP_008876387.1|	-	1.4e-34	119.6	0.0	2.7e-34	118.7	0.0	1.4	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|564290101|ref|YP_008876387.1|	-	5.4e-07	29.1	0.0	8.3e-06	25.2	0.0	2.1	2	0	0	2	2	2	1	BlaR1	peptidase	M56
HisKA_4TM	PF16926.5	gi|564290101|ref|YP_008876387.1|	-	0.0072	15.9	1.3	0.02	14.5	1.3	1.7	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
DUF4157	PF13699.6	gi|564290101|ref|YP_008876387.1|	-	0.34	11.2	1.5	0.54	10.5	0.2	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4157)
PQQ_2	PF13360.6	gi|564291356|ref|YP_008876388.1|	-	1.9e-28	99.7	6.2	3.2e-19	69.5	5.1	2.8	2	1	1	3	3	3	2	PQQ-like	domain
PQQ_3	PF13570.6	gi|564291356|ref|YP_008876388.1|	-	2.5e-11	43.7	21.1	6.1e-06	26.6	1.5	7.3	7	1	0	7	7	7	4	PQQ-like	domain
PQQ	PF01011.21	gi|564291356|ref|YP_008876388.1|	-	6.2e-11	41.7	2.6	9.7e-06	25.3	0.0	5.2	6	0	0	6	6	6	3	PQQ	enzyme	repeat
CbiX	PF01903.17	gi|564290102|ref|YP_008876389.1|	-	4.9e-43	145.8	0.0	2.5e-20	72.8	0.0	2.3	2	0	0	2	2	2	2	CbiX
CbiK	PF06180.11	gi|564290102|ref|YP_008876389.1|	-	1.5e-06	27.7	0.0	0.0011	18.3	0.1	2.1	2	0	0	2	2	2	2	Cobalt	chelatase	(CbiK)
tRNA-synt_1e	PF01406.19	gi|564290105|ref|YP_008876392.1|	-	1.4e-104	349.7	0.0	2.8e-103	345.4	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DALR_2	PF09190.11	gi|564290105|ref|YP_008876392.1|	-	2.6e-13	50.2	1.4	1e-12	48.3	0.6	2.2	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1g	PF09334.11	gi|564290105|ref|YP_008876392.1|	-	7.9e-11	41.3	0.1	0.00013	20.8	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.18	gi|564290105|ref|YP_008876392.1|	-	1.9e-08	33.6	0.1	6.5e-05	22.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.22	gi|564290105|ref|YP_008876392.1|	-	5.1e-05	21.7	0.1	0.00016	20.1	0.0	1.8	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1c	PF00749.21	gi|564290105|ref|YP_008876392.1|	-	0.0023	16.9	0.0	0.0042	16.0	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
UVR	PF02151.19	gi|564290105|ref|YP_008876392.1|	-	0.024	14.4	0.2	0.024	14.4	0.2	2.3	2	0	0	2	2	2	0	UvrB/uvrC	motif
FeoB_Cyto	PF17910.1	gi|564290105|ref|YP_008876392.1|	-	0.065	13.8	0.2	2.8	8.6	0.1	2.8	1	1	0	1	1	1	0	FeoB	cytosolic	helical	domain
AP_endonuc_2	PF01261.24	gi|564290105|ref|YP_008876392.1|	-	0.12	11.8	2.9	4.1	6.8	0.2	2.7	2	1	0	3	3	3	0	Xylose	isomerase-like	TIM	barrel
DUF2628	PF10947.8	gi|564290107|ref|YP_008876394.1|	-	0.21	12.0	1.1	0.24	11.8	1.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
DUF3040	PF11239.8	gi|564290107|ref|YP_008876394.1|	-	6.1	7.2	9.3	9.3	6.6	9.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
CorA	PF01544.18	gi|564290108|ref|YP_008876395.1|	-	6.6e-69	232.4	0.1	8.2e-69	232.1	0.1	1.0	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
TctA	PF01970.16	gi|564290109|ref|YP_008876396.1|	-	1.9e-56	191.6	40.0	2.3e-56	191.3	40.0	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
HTH_20	PF12840.7	gi|564290110|ref|YP_008876397.1|	-	1.6e-11	44.1	0.1	2.6e-11	43.4	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564290110|ref|YP_008876397.1|	-	1.9e-08	34.0	0.0	2.8e-08	33.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564290110|ref|YP_008876397.1|	-	7.6e-07	28.9	0.0	1.2e-06	28.3	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564290110|ref|YP_008876397.1|	-	2.4e-06	27.3	0.0	3.6e-06	26.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.6	gi|564290110|ref|YP_008876397.1|	-	2e-05	25.0	0.1	2.8e-05	24.5	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|564290110|ref|YP_008876397.1|	-	7.6e-05	22.5	0.0	0.00011	22.0	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564290110|ref|YP_008876397.1|	-	0.00014	21.6	0.1	0.00021	21.0	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|564290110|ref|YP_008876397.1|	-	0.0004	20.2	0.0	0.00055	19.8	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
B-block_TFIIIC	PF04182.12	gi|564290110|ref|YP_008876397.1|	-	0.00089	19.4	0.0	0.0013	18.8	0.0	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_24	PF13412.6	gi|564290110|ref|YP_008876397.1|	-	0.0021	17.6	0.0	0.0028	17.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.6	gi|564290110|ref|YP_008876397.1|	-	0.0041	17.3	0.0	0.0056	16.8	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF2513	PF10711.9	gi|564290110|ref|YP_008876397.1|	-	0.0094	16.2	0.0	0.011	16.0	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
GntR	PF00392.21	gi|564290110|ref|YP_008876397.1|	-	0.0094	15.6	0.0	0.015	14.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
PadR	PF03551.14	gi|564290110|ref|YP_008876397.1|	-	0.013	15.4	0.4	0.031	14.2	0.3	1.7	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
HxlR	PF01638.17	gi|564290110|ref|YP_008876397.1|	-	0.026	14.4	0.0	0.033	14.1	0.0	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
RP-C	PF03428.13	gi|564290110|ref|YP_008876397.1|	-	0.12	12.0	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
MoeA_N	PF03453.17	gi|564290112|ref|YP_008876399.1|	-	4.9e-42	143.4	6.6	8.9e-42	142.5	6.6	1.5	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|564290112|ref|YP_008876399.1|	-	4.1e-25	88.1	0.2	7.1e-25	87.4	0.2	1.4	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|564290112|ref|YP_008876399.1|	-	2.1e-18	66.3	0.1	2.1e-18	66.3	0.1	3.0	3	0	0	3	3	3	1	MoeA	C-terminal	region	(domain	IV)
MoeA_N	PF03453.17	gi|564290113|ref|YP_008876400.1|	-	2.2e-41	141.3	7.1	4.6e-41	140.2	7.1	1.6	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.24	gi|564290113|ref|YP_008876400.1|	-	3.8e-24	85.0	0.0	7.4e-24	84.1	0.0	1.5	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
PBP_like	PF12727.7	gi|564290113|ref|YP_008876400.1|	-	2.5e-23	82.2	0.0	2.8e-22	78.8	0.0	2.4	1	1	0	1	1	1	1	PBP	superfamily	domain
MoeA_C	PF03454.15	gi|564290113|ref|YP_008876400.1|	-	2e-16	59.9	0.2	1.1e-15	57.5	0.0	2.3	2	0	0	2	2	2	1	MoeA	C-terminal	region	(domain	IV)
Fe-ADH	PF00465.19	gi|564290114|ref|YP_008876401.1|	-	1.4e-62	211.7	1.1	1.7e-62	211.4	1.1	1.0	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.6	gi|564290114|ref|YP_008876401.1|	-	5e-10	39.5	0.0	2.5e-08	33.9	0.0	2.2	2	0	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
Pyr_redox_2	PF07992.14	gi|564290115|ref|YP_008876402.1|	-	5.7e-40	137.4	0.3	6.9e-40	137.1	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564290115|ref|YP_008876402.1|	-	2.4e-07	31.2	0.9	1e-05	26.0	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|564290115|ref|YP_008876402.1|	-	0.023	14.0	0.3	3.3	6.9	0.0	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|564290115|ref|YP_008876402.1|	-	0.12	12.4	1.1	15	5.5	0.1	3.1	3	0	0	3	3	3	0	FAD-NAD(P)-binding
ThuA	PF06283.11	gi|564290116|ref|YP_008876403.1|	-	5.2e-33	115.0	0.2	6.1e-33	114.8	0.2	1.1	1	0	0	1	1	1	1	Trehalose	utilisation
LacI	PF00356.21	gi|564290116|ref|YP_008876403.1|	-	0.14	12.0	0.0	0.25	11.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
HxlR	PF01638.17	gi|564290117|ref|YP_008876404.1|	-	1.4e-27	95.4	0.0	1.6e-27	95.1	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
TrmB	PF01978.19	gi|564290117|ref|YP_008876404.1|	-	0.0066	16.3	0.0	0.0093	15.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
PadR	PF03551.14	gi|564290117|ref|YP_008876404.1|	-	0.014	15.3	0.0	0.021	14.8	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.6	gi|564290117|ref|YP_008876404.1|	-	0.086	13.0	0.0	0.12	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|564290117|ref|YP_008876404.1|	-	0.12	12.4	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
CoA_binding_2	PF13380.6	gi|564290118|ref|YP_008876405.1|	-	8.1e-37	126.3	0.0	9.2e-37	126.1	0.0	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.19	gi|564290118|ref|YP_008876405.1|	-	0.00029	21.5	0.0	0.00043	20.9	0.0	1.2	1	0	0	1	1	1	1	CoA	binding	domain
DUF3665	PF12427.8	gi|564290118|ref|YP_008876405.1|	-	0.41	10.4	2.5	0.38	10.5	0.5	2.0	3	0	0	3	3	3	0	Branched-chain	amino	acid	aminotransferase
DUF393	PF04134.12	gi|564290119|ref|YP_008876406.1|	-	8.1e-14	52.9	0.1	9.3e-14	52.7	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
BolA	PF01722.18	gi|564290120|ref|YP_008876408.1|	-	1.3e-17	63.8	0.0	1.5e-17	63.6	0.0	1.1	1	0	0	1	1	1	1	BolA-like	protein
Glutaredoxin	PF00462.24	gi|564290121|ref|YP_008876409.1|	-	1.2e-15	57.4	0.1	2.1e-15	56.7	0.0	1.4	2	0	0	2	2	2	1	Glutaredoxin
GST_N_3	PF13417.6	gi|564290121|ref|YP_008876409.1|	-	0.037	14.4	0.0	0.055	13.9	0.0	1.3	1	0	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
KH_7	PF17214.3	gi|564290123|ref|YP_008876411.1|	-	8e-27	93.0	0.4	1.2e-24	86.0	0.4	2.7	2	0	0	2	2	2	1	KH	domain
Beta-Casp	PF10996.8	gi|564290123|ref|YP_008876411.1|	-	5.2e-22	78.2	0.0	9.6e-22	77.4	0.0	1.5	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|564290123|ref|YP_008876411.1|	-	2.3e-14	53.1	0.0	4.7e-14	52.1	0.0	1.6	1	0	0	1	1	1	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B	PF00753.27	gi|564290123|ref|YP_008876411.1|	-	1.6e-12	47.9	1.0	6.7e-12	45.8	1.0	2.0	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|564290123|ref|YP_008876411.1|	-	1.1e-10	41.2	0.0	2.1e-10	40.4	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|564290123|ref|YP_008876411.1|	-	1.9e-10	40.6	0.2	5.1e-10	39.2	0.1	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.17	gi|564290123|ref|YP_008876411.1|	-	1.4e-05	24.8	0.1	0.00011	22.0	0.0	2.3	2	1	0	2	2	2	1	KH	domain
KH_4	PF13083.6	gi|564290123|ref|YP_008876411.1|	-	0.00074	19.3	0.0	0.0021	17.9	0.0	1.7	1	0	0	1	1	1	1	KH	domain
Lactamase_B_3	PF13483.6	gi|564290123|ref|YP_008876411.1|	-	0.0017	18.2	0.0	0.0055	16.6	0.0	1.8	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DUF3489	PF11994.8	gi|564290123|ref|YP_008876411.1|	-	0.13	12.4	0.0	0.31	11.1	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
DHHA1	PF02272.19	gi|564290124|ref|YP_008876412.1|	-	4.7e-13	49.7	0.1	1e-12	48.6	0.1	1.6	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.20	gi|564290124|ref|YP_008876412.1|	-	6e-13	48.9	0.4	1.1e-12	48.1	0.4	1.4	1	0	0	1	1	1	1	DHH	family
MFS_MOT1	PF16983.5	gi|564290125|ref|YP_008876413.1|	-	1.5e-40	138.0	27.9	1.4e-21	76.9	9.5	3.5	4	0	0	4	4	4	2	Molybdate	transporter	of	MFS	superfamily
Sulfate_transp	PF00916.20	gi|564290125|ref|YP_008876413.1|	-	5.4e-06	25.4	8.5	5.4e-06	25.4	8.5	2.4	1	1	1	2	2	2	1	Sulfate	permease	family
DUF3754	PF12576.8	gi|564290125|ref|YP_008876413.1|	-	0.12	12.3	0.1	0.12	12.3	0.1	3.1	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3754)
Radical_SAM	PF04055.21	gi|564290126|ref|YP_008876414.1|	-	4.2e-22	79.3	0.0	7.4e-22	78.5	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Mob_synth_C	PF06463.13	gi|564290126|ref|YP_008876414.1|	-	3.8e-14	52.7	0.2	2.7e-12	46.7	0.2	2.3	1	1	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Fer4_12	PF13353.6	gi|564290126|ref|YP_008876414.1|	-	1.2e-07	32.1	0.0	2.3e-07	31.2	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|564290126|ref|YP_008876414.1|	-	2.3e-06	27.7	0.0	4.8e-06	26.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Cytochrome_CBB3	PF13442.6	gi|564290126|ref|YP_008876414.1|	-	0.0062	16.8	0.1	2.3	8.6	0.0	2.8	2	1	0	2	2	2	2	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
Imm75	PF15660.6	gi|564290126|ref|YP_008876414.1|	-	0.015	15.5	0.0	0.036	14.3	0.0	1.6	1	0	0	1	1	1	0	Putative	Immunity	protein	75
Cytochrom_C	PF00034.21	gi|564290126|ref|YP_008876414.1|	-	0.098	13.8	0.0	4.9	8.4	0.0	2.6	2	0	0	2	2	2	0	Cytochrome	c
NTP_transf_3	PF12804.7	gi|564290128|ref|YP_008876416.1|	-	1.5e-35	122.9	0.6	1.9e-35	122.6	0.6	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.19	gi|564290128|ref|YP_008876416.1|	-	0.0015	18.5	0.0	0.0041	17.1	0.0	1.9	1	1	0	1	1	1	1	Cytidylyltransferase
RPN6_C_helix	PF18503.1	gi|564290128|ref|YP_008876416.1|	-	0.96	9.2	4.2	61	3.5	0.4	3.4	3	0	0	3	3	3	0	26S	proteasome	subunit	RPN6	C-terminal	helix	domain
AFOR_C	PF01314.18	gi|564290129|ref|YP_008876417.1|	-	3.9e-95	319.1	0.0	6e-95	318.5	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|564290129|ref|YP_008876417.1|	-	3e-61	206.8	0.2	4.2e-61	206.3	0.2	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
TcpE	PF12648.7	gi|564290131|ref|YP_008876419.1|	-	0.013	16.0	1.6	0.017	15.6	1.6	1.1	1	0	0	1	1	1	0	TcpE	family
Zn-ribbon_8	PF09723.10	gi|564290132|ref|YP_008876420.1|	-	0.0012	18.9	2.3	0.0017	18.5	2.3	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564290132|ref|YP_008876420.1|	-	0.0039	16.7	0.8	0.73	9.4	0.0	2.1	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|564290132|ref|YP_008876420.1|	-	0.0041	16.7	1.4	0.0093	15.5	0.1	1.9	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zf-RRN7	PF11781.8	gi|564290132|ref|YP_008876420.1|	-	0.011	15.4	2.1	0.13	11.9	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
zf-dskA_traR	PF01258.17	gi|564290132|ref|YP_008876420.1|	-	0.013	15.4	1.5	0.15	12.0	0.2	2.1	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zf-C3HC4_3	PF13920.6	gi|564290132|ref|YP_008876420.1|	-	0.02	14.7	0.5	0.027	14.3	0.5	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Sgf11	PF08209.11	gi|564290132|ref|YP_008876420.1|	-	0.022	14.3	0.8	0.13	11.9	0.0	2.0	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
RNHCP	PF12647.7	gi|564290132|ref|YP_008876420.1|	-	0.024	14.6	0.2	0.024	14.6	0.2	1.1	1	0	0	1	1	1	0	RNHCP	domain
DZR	PF12773.7	gi|564290132|ref|YP_008876420.1|	-	0.039	14.0	1.3	0.054	13.5	1.3	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-ACC	PF17848.1	gi|564290132|ref|YP_008876420.1|	-	0.066	13.3	1.9	1.1	9.3	0.2	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
HypA	PF01155.19	gi|564290132|ref|YP_008876420.1|	-	0.07	13.1	0.4	0.079	13.0	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF5318	PF17249.2	gi|564290132|ref|YP_008876420.1|	-	0.12	12.1	0.1	0.13	12.1	0.1	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5318)
DUF2379	PF09543.10	gi|564290133|ref|YP_008876421.1|	-	0.088	13.0	1.7	0.31	11.2	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2379)
Dyp_perox	PF04261.12	gi|564290135|ref|YP_008876423.1|	-	0.0053	15.8	0.0	0.0093	15.0	0.0	1.6	1	0	0	1	1	1	1	Dyp-type	peroxidase	family
DUF3135	PF11333.8	gi|564290135|ref|YP_008876423.1|	-	0.11	12.8	0.8	11	6.3	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3135)
Pox_I5	PF04713.12	gi|564290138|ref|YP_008876426.1|	-	0.09	12.8	3.6	0.14	12.2	3.7	1.3	1	1	0	1	1	1	0	Poxvirus	protein	I5
Nitrate_red_del	PF02613.15	gi|564290139|ref|YP_008876427.1|	-	2.1e-26	92.6	0.1	2.8e-26	92.1	0.1	1.2	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
FlpD	PF02662.16	gi|564290140|ref|YP_008876428.1|	-	5.7e-25	87.7	0.0	1.4e-24	86.5	0.0	1.6	1	0	0	1	1	1	1	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Fer4_7	PF12838.7	gi|564290140|ref|YP_008876428.1|	-	1.1e-14	54.8	33.1	1.3e-06	28.9	11.4	5.9	4	2	3	7	7	7	4	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564290140|ref|YP_008876428.1|	-	1.1e-13	51.9	21.3	0.00049	21.0	0.2	6.6	6	0	0	6	6	6	4	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|564290140|ref|YP_008876428.1|	-	1.4e-12	47.5	36.7	7.5e-06	26.0	9.1	5.3	5	1	0	5	5	5	3	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564290140|ref|YP_008876428.1|	-	4.5e-12	45.3	51.0	0.00012	21.8	4.2	7.6	7	0	0	7	7	7	4	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|564290140|ref|YP_008876428.1|	-	5e-10	39.7	16.8	0.016	15.6	0.3	5.9	5	1	0	5	5	5	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564290140|ref|YP_008876428.1|	-	1.4e-06	28.3	34.3	5.4e-05	23.2	4.1	5.4	5	1	1	6	6	6	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|564290140|ref|YP_008876428.1|	-	1.8e-06	27.8	54.0	7.6e-05	22.6	2.8	7.2	7	0	0	7	7	7	4	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|564290140|ref|YP_008876428.1|	-	7.8e-06	25.9	44.2	0.0042	17.2	13.9	5.4	3	3	3	6	6	6	4	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|564290140|ref|YP_008876428.1|	-	1e-05	26.0	28.5	0.015	15.8	0.3	6.3	6	1	1	7	7	7	3	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|564290140|ref|YP_008876428.1|	-	0.00056	20.1	21.8	0.19	11.9	1.4	4.8	4	1	1	5	5	5	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564290140|ref|YP_008876428.1|	-	0.00079	19.4	3.8	0.00079	19.4	3.8	7.4	8	0	0	8	8	8	3	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564290140|ref|YP_008876428.1|	-	0.092	13.3	51.9	0.075	13.6	2.9	7.8	9	0	0	9	9	8	0	4Fe-4S	binding	domain
Molybdopterin	PF00384.22	gi|564290141|ref|YP_008876429.1|	-	4.4e-36	124.8	3.1	4.3e-35	121.5	3.1	2.5	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564290141|ref|YP_008876429.1|	-	2.3e-18	66.2	0.1	5.3e-18	65.1	0.1	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|564290141|ref|YP_008876429.1|	-	6.6e-15	54.8	0.3	1.2e-14	54.0	0.3	1.5	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.9	gi|564290141|ref|YP_008876429.1|	-	0.0049	16.7	2.7	0.01	15.6	2.7	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Fer4_11	PF13247.6	gi|564290142|ref|YP_008876430.1|	-	3.1e-16	59.3	11.7	3.1e-16	59.3	11.7	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564290142|ref|YP_008876430.1|	-	2.1e-14	53.8	23.3	4.2e-07	30.5	8.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564290142|ref|YP_008876430.1|	-	6.7e-12	45.4	24.9	1.6e-06	28.1	7.3	3.1	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564290142|ref|YP_008876430.1|	-	1.4e-09	38.0	26.4	2.2e-06	27.7	6.5	3.1	2	1	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564290142|ref|YP_008876430.1|	-	3.4e-07	29.8	39.2	2.1e-06	27.3	1.4	5.5	6	0	0	6	6	6	3	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564290142|ref|YP_008876430.1|	-	1.6e-06	27.9	38.5	4.7e-05	23.3	1.5	5.3	4	2	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|564290142|ref|YP_008876430.1|	-	4.4e-06	27.0	22.9	0.00092	19.6	5.9	2.7	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564290142|ref|YP_008876430.1|	-	4.9e-06	27.4	19.5	0.26	12.2	4.8	4.7	4	1	0	4	4	4	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|564290142|ref|YP_008876430.1|	-	9.7e-06	25.6	27.2	0.00028	20.9	10.7	3.8	3	2	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564290142|ref|YP_008876430.1|	-	1.8e-05	24.5	35.3	0.0025	17.8	1.8	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|564290142|ref|YP_008876430.1|	-	0.0002	22.0	39.3	0.028	15.4	4.0	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|564290142|ref|YP_008876430.1|	-	0.00023	21.6	25.1	0.0013	19.3	6.0	3.6	2	2	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|564290142|ref|YP_008876430.1|	-	0.0083	16.6	11.7	0.027	14.9	2.0	4.4	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_13	PF13370.6	gi|564290142|ref|YP_008876430.1|	-	0.19	12.3	0.2	0.19	12.3	0.2	4.3	4	1	1	5	5	5	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_18	PF13746.6	gi|564290142|ref|YP_008876430.1|	-	0.6	10.3	22.4	0.39	10.9	7.4	3.0	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|564290142|ref|YP_008876430.1|	-	1.9	9.3	19.5	0.34	11.7	6.2	3.3	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
BTP	PF05232.12	gi|564290143|ref|YP_008876431.1|	-	0.035	14.2	1.8	0.13	12.3	0.0	2.1	2	0	0	2	2	2	0	Chlorhexidine	efflux	transporter
Ni_hydr_CYTB	PF01292.20	gi|564290144|ref|YP_008876432.1|	-	5.3e-22	78.3	10.3	1.7e-20	73.3	11.8	2.0	2	0	0	2	2	2	1	Prokaryotic	cytochrome	b561
PepSY_TM	PF03929.16	gi|564290144|ref|YP_008876432.1|	-	0.011	15.5	1.3	0.011	15.5	1.3	2.9	3	1	0	3	3	3	0	PepSY-associated	TM	region
Asp4	PF16996.5	gi|564290144|ref|YP_008876432.1|	-	0.28	11.0	0.2	0.28	11.0	0.2	3.0	3	0	0	3	3	3	0	Accessory	secretory	protein	Sec	Asp4
DUF5516	PF17637.2	gi|564290144|ref|YP_008876432.1|	-	0.96	9.3	4.4	3.6	7.4	4.4	2.0	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5516)
COX14	PF14880.6	gi|564290144|ref|YP_008876432.1|	-	1.5	8.7	0.0	1.5	8.7	0.0	3.0	3	0	0	3	3	3	0	Cytochrome	oxidase	c	assembly
DUF1418	PF07214.12	gi|564290144|ref|YP_008876432.1|	-	6.1	6.8	5.8	5.9	6.8	1.4	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1418)
DUF2985	PF11204.8	gi|564290146|ref|YP_008876434.1|	-	0.015	15.5	1.0	0.019	15.1	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2985)
Mit_proteolip	PF08039.11	gi|564290146|ref|YP_008876434.1|	-	0.13	12.8	0.1	0.2	12.2	0.0	1.3	1	1	0	1	1	1	0	Mitochondrial	proteolipid
IclR	PF01614.18	gi|564290147|ref|YP_008876435.1|	-	2.4e-36	124.4	0.0	3.4e-36	123.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564290147|ref|YP_008876435.1|	-	3.6e-13	49.1	0.0	1.2e-12	47.4	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564290147|ref|YP_008876435.1|	-	2e-05	24.1	0.0	3.8e-05	23.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564290147|ref|YP_008876435.1|	-	3.9e-05	23.4	0.0	8.9e-05	22.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.19	gi|564290147|ref|YP_008876435.1|	-	4.6e-05	23.5	0.0	0.00011	22.3	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|564290147|ref|YP_008876435.1|	-	4.9e-05	23.1	0.0	0.00011	22.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564290147|ref|YP_008876435.1|	-	6.8e-05	22.7	0.0	0.00013	21.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564290147|ref|YP_008876435.1|	-	0.00058	19.9	0.1	0.0018	18.3	0.0	1.8	2	0	0	2	2	1	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564290147|ref|YP_008876435.1|	-	0.0006	19.7	0.0	0.0012	18.6	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.6	gi|564290147|ref|YP_008876435.1|	-	0.0007	19.3	0.0	0.0021	17.8	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_11	PF08279.12	gi|564290147|ref|YP_008876435.1|	-	0.0028	17.6	0.0	0.0056	16.6	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_45	PF14947.6	gi|564290147|ref|YP_008876435.1|	-	0.0041	17.1	0.0	0.011	15.8	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix
Rrf2	PF02082.20	gi|564290147|ref|YP_008876435.1|	-	0.021	15.2	0.0	0.047	14.0	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_DeoR	PF08220.12	gi|564290147|ref|YP_008876435.1|	-	0.049	13.4	0.0	0.1	12.3	0.0	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
SpoIIID	PF12116.8	gi|564290147|ref|YP_008876435.1|	-	0.049	13.7	0.0	3.1	8.0	0.0	3.0	2	1	1	3	3	3	0	Stage	III	sporulation	protein	D
Phage_CI_repr	PF07022.13	gi|564290147|ref|YP_008876435.1|	-	0.051	13.7	0.0	0.082	13.0	0.0	1.7	1	1	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
GntR	PF00392.21	gi|564290147|ref|YP_008876435.1|	-	0.055	13.1	0.1	0.45	10.2	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
DUF742	PF05331.11	gi|564290147|ref|YP_008876435.1|	-	0.071	12.9	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
GAF	PF01590.26	gi|564290147|ref|YP_008876435.1|	-	0.092	13.4	0.0	0.19	12.4	0.0	1.8	1	1	0	1	1	1	0	GAF	domain
HTH_10	PF04967.12	gi|564290147|ref|YP_008876435.1|	-	0.11	12.4	0.0	0.29	11.0	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|564290147|ref|YP_008876435.1|	-	0.16	11.7	0.2	0.42	10.3	0.0	1.8	2	0	0	2	2	1	0	Sigma-70,	region	4
FAA_hydrolase	PF01557.18	gi|564290148|ref|YP_008876436.1|	-	1.6e-20	73.8	0.0	1.3e-19	70.8	0.0	2.1	1	1	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
TrkA_C	PF02080.21	gi|564290148|ref|YP_008876436.1|	-	0.027	14.3	0.2	0.071	12.9	0.2	1.7	1	0	0	1	1	1	0	TrkA-C	domain
Methyltransf_25	PF13649.6	gi|564290149|ref|YP_008876437.1|	-	2e-13	50.9	0.1	3.5e-13	50.1	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564290149|ref|YP_008876437.1|	-	1e-12	48.5	0.1	1.8e-12	47.7	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564290149|ref|YP_008876437.1|	-	7.1e-08	32.5	0.0	1e-07	31.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290149|ref|YP_008876437.1|	-	2.8e-07	30.4	0.1	4e-07	29.9	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564290149|ref|YP_008876437.1|	-	6.1e-07	30.1	0.2	1e-06	29.4	0.2	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|564290149|ref|YP_008876437.1|	-	0.00012	21.5	0.2	0.00078	18.9	0.2	1.9	1	1	0	1	1	1	1	Tellurite	resistance	protein	TehB
MTS	PF05175.14	gi|564290149|ref|YP_008876437.1|	-	0.00023	20.7	0.1	0.00033	20.3	0.1	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
MetW	PF07021.12	gi|564290149|ref|YP_008876437.1|	-	0.00032	20.4	0.0	0.00048	19.8	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_9	PF08003.11	gi|564290149|ref|YP_008876437.1|	-	0.0043	16.0	0.0	0.0052	15.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_24	PF13578.6	gi|564290149|ref|YP_008876437.1|	-	0.061	14.4	0.1	0.1	13.6	0.1	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
PrmA	PF06325.13	gi|564290149|ref|YP_008876437.1|	-	0.074	12.4	0.3	0.096	12.1	0.3	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
NodS	PF05401.11	gi|564290149|ref|YP_008876437.1|	-	0.1	12.2	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
Pox_MCEL	PF03291.16	gi|564290149|ref|YP_008876437.1|	-	0.23	10.5	0.0	0.3	10.2	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
AMP-binding	PF00501.28	gi|564290150|ref|YP_008876438.1|	-	1.5e-77	261.0	0.0	1.9e-77	260.6	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564290150|ref|YP_008876438.1|	-	2.2e-22	79.8	0.5	3.1e-21	76.1	0.3	2.7	3	0	0	3	3	3	1	AMP-binding	enzyme	C-terminal	domain
Dpy-30	PF05186.13	gi|564290150|ref|YP_008876438.1|	-	0.052	13.2	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	Dpy-30	motif
DUF3561	PF12084.8	gi|564290151|ref|YP_008876439.1|	-	0.12	12.4	3.7	0.34	10.9	0.5	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3561)
DUF872	PF05915.12	gi|564290151|ref|YP_008876439.1|	-	0.12	12.5	2.3	0.12	12.5	0.6	1.8	2	0	0	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
DUF745	PF05335.13	gi|564290152|ref|YP_008876440.1|	-	8.1e-05	22.4	1.7	0.0001	22.1	1.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF745)
Syntaxin-6_N	PF09177.11	gi|564290152|ref|YP_008876440.1|	-	0.00026	21.5	1.5	0.0004	20.9	1.5	1.2	1	0	0	1	1	1	1	Syntaxin	6,	N-terminal
Med9	PF07544.13	gi|564290152|ref|YP_008876440.1|	-	0.0004	20.4	0.6	0.00057	19.9	0.6	1.2	1	0	0	1	1	1	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
RmuC	PF02646.16	gi|564290152|ref|YP_008876440.1|	-	0.0009	18.5	0.5	0.001	18.3	0.5	1.1	1	0	0	1	1	1	1	RmuC	family
DegS	PF05384.11	gi|564290152|ref|YP_008876440.1|	-	0.0012	18.4	1.5	0.0015	18.0	1.5	1.1	1	0	0	1	1	1	1	Sensor	protein	DegS
ATG16	PF08614.11	gi|564290152|ref|YP_008876440.1|	-	0.0015	18.8	2.5	0.0016	18.7	2.5	1.1	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
Cast	PF10174.9	gi|564290152|ref|YP_008876440.1|	-	0.0023	16.2	5.8	0.0027	16.0	5.8	1.0	1	0	0	1	1	1	1	RIM-binding	protein	of	the	cytomatrix	active	zone
DUF3450	PF11932.8	gi|564290152|ref|YP_008876440.1|	-	0.0025	17.2	1.2	0.0029	17.0	1.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
DUF1664	PF07889.12	gi|564290152|ref|YP_008876440.1|	-	0.0033	17.5	0.4	0.0044	17.0	0.4	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|564290152|ref|YP_008876440.1|	-	0.0037	17.5	1.2	0.0056	16.9	1.2	1.4	1	0	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Laminin_II	PF06009.12	gi|564290152|ref|YP_008876440.1|	-	0.0038	17.2	1.5	0.0038	17.2	1.5	1.4	1	1	0	1	1	1	1	Laminin	Domain	II
GldM_N	PF12081.8	gi|564290152|ref|YP_008876440.1|	-	0.0042	17.2	1.2	0.0048	17.0	1.2	1.1	1	0	0	1	1	1	1	GldM	N-terminal	domain
CENP-F_leu_zip	PF10473.9	gi|564290152|ref|YP_008876440.1|	-	0.0047	17.0	1.7	0.0055	16.7	1.7	1.1	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Spc7	PF08317.11	gi|564290152|ref|YP_008876440.1|	-	0.0056	15.6	1.4	0.0059	15.5	1.4	1.0	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Herpes_UL6	PF01763.16	gi|564290152|ref|YP_008876440.1|	-	0.011	14.3	0.6	0.012	14.2	0.6	1.0	1	0	0	1	1	1	0	Herpesvirus	UL6	like
MAD	PF05557.13	gi|564290152|ref|YP_008876440.1|	-	0.012	14.0	2.2	0.014	13.8	2.2	1.0	1	0	0	1	1	1	0	Mitotic	checkpoint	protein
ADIP	PF11559.8	gi|564290152|ref|YP_008876440.1|	-	0.013	15.5	1.0	0.018	15.1	1.0	1.1	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
NPV_P10	PF05531.12	gi|564290152|ref|YP_008876440.1|	-	0.014	15.8	0.9	0.022	15.2	0.8	1.4	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Phage_GP20	PF06810.11	gi|564290152|ref|YP_008876440.1|	-	0.015	15.1	4.9	0.018	14.9	4.9	1.1	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
Med16	PF11635.8	gi|564290152|ref|YP_008876440.1|	-	0.017	13.1	0.0	0.019	12.9	0.0	1.0	1	0	0	1	1	1	0	Mediator	complex	subunit	16
TPR_MLP1_2	PF07926.12	gi|564290152|ref|YP_008876440.1|	-	0.017	15.1	3.9	0.02	15.0	3.1	1.4	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
Swi5	PF07061.11	gi|564290152|ref|YP_008876440.1|	-	0.02	14.9	1.8	2.3	8.3	1.8	2.3	1	1	0	1	1	1	0	Swi5
Ax_dynein_light	PF10211.9	gi|564290152|ref|YP_008876440.1|	-	0.025	14.5	1.8	0.031	14.2	1.8	1.1	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
DUF1202	PF06717.11	gi|564290152|ref|YP_008876440.1|	-	0.038	13.4	0.7	0.042	13.3	0.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1202)
DUF3782	PF12644.7	gi|564290152|ref|YP_008876440.1|	-	0.038	14.1	1.4	0.093	12.9	1.4	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3782)
Prominin	PF05478.11	gi|564290152|ref|YP_008876440.1|	-	0.045	11.7	0.3	0.047	11.7	0.3	1.0	1	0	0	1	1	1	0	Prominin
Atg14	PF10186.9	gi|564290152|ref|YP_008876440.1|	-	0.048	12.8	0.2	0.048	12.7	0.2	1.0	1	0	0	1	1	1	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
T3SSipB	PF16535.5	gi|564290152|ref|YP_008876440.1|	-	0.048	14.1	4.6	0.055	13.9	4.6	1.0	1	0	0	1	1	1	0	Type	III	cell	invasion	protein	SipB
DUF948	PF06103.11	gi|564290152|ref|YP_008876440.1|	-	0.051	13.8	2.7	0.13	12.5	1.6	1.9	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DivIVA	PF05103.13	gi|564290152|ref|YP_008876440.1|	-	0.054	13.6	4.4	0.063	13.4	4.4	1.2	1	0	0	1	1	1	0	DivIVA	protein
HSBP1	PF06825.12	gi|564290152|ref|YP_008876440.1|	-	0.057	13.3	0.3	4	7.4	0.2	2.2	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
FlaC_arch	PF05377.11	gi|564290152|ref|YP_008876440.1|	-	0.059	13.8	1.1	0.12	12.8	1.1	1.7	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DUF4795	PF16043.5	gi|564290152|ref|YP_008876440.1|	-	0.063	12.9	2.3	0.072	12.7	2.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
LpxB	PF02684.15	gi|564290152|ref|YP_008876440.1|	-	0.065	12.1	0.1	0.07	11.9	0.1	1.0	1	0	0	1	1	1	0	Lipid-A-disaccharide	synthetase
Cnn_1N	PF07989.11	gi|564290152|ref|YP_008876440.1|	-	0.067	13.4	1.7	0.092	12.9	0.9	1.6	1	1	0	1	1	1	0	Centrosomin	N-terminal	motif	1
bZIP_1	PF00170.21	gi|564290152|ref|YP_008876440.1|	-	0.073	13.2	0.6	0.12	12.5	0.6	1.4	1	0	0	1	1	1	0	bZIP	transcription	factor
TMPIT	PF07851.13	gi|564290152|ref|YP_008876440.1|	-	0.076	12.2	0.3	0.082	12.1	0.3	1.0	1	0	0	1	1	1	0	TMPIT-like	protein
Topoisom_I	PF01028.20	gi|564290152|ref|YP_008876440.1|	-	0.078	12.2	0.4	0.081	12.2	0.4	1.1	1	0	0	1	1	1	0	Eukaryotic	DNA	topoisomerase	I,	catalytic	core
Spc24	PF08286.11	gi|564290152|ref|YP_008876440.1|	-	0.084	13.1	3.0	0.12	12.6	3.0	1.4	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF2730	PF10805.8	gi|564290152|ref|YP_008876440.1|	-	0.091	12.9	1.0	0.12	12.4	1.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
Metal_resist	PF13801.6	gi|564290152|ref|YP_008876440.1|	-	0.096	12.9	3.6	0.13	12.4	3.0	1.5	1	1	1	2	2	2	0	Heavy-metal	resistance
EMP24_GP25L	PF01105.24	gi|564290152|ref|YP_008876440.1|	-	0.12	12.3	0.3	0.15	12.0	0.3	1.2	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
TMF_DNA_bd	PF12329.8	gi|564290152|ref|YP_008876440.1|	-	0.14	12.1	4.4	0.3	11.1	4.4	1.5	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
ScdA_N	PF04405.14	gi|564290152|ref|YP_008876440.1|	-	0.15	11.8	0.5	1.7	8.4	0.3	2.3	2	0	0	2	2	2	0	Domain	of	Unknown	function	(DUF542)
DUF2937	PF11157.8	gi|564290152|ref|YP_008876440.1|	-	0.16	11.7	1.7	3.2	7.4	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2937)
DUF4549	PF15082.6	gi|564290152|ref|YP_008876440.1|	-	0.31	10.8	2.0	2	8.2	0.4	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4549)
ZapB	PF06005.12	gi|564290152|ref|YP_008876440.1|	-	0.41	11.1	4.7	0.62	10.6	4.7	1.2	1	0	0	1	1	1	0	Cell	division	protein	ZapB
SlyX	PF04102.12	gi|564290152|ref|YP_008876440.1|	-	0.45	11.2	3.1	2.3	8.9	3.1	2.0	1	1	0	1	1	1	0	SlyX
XhlA	PF10779.9	gi|564290152|ref|YP_008876440.1|	-	0.46	10.7	3.0	0.76	10.0	1.8	1.9	1	1	1	2	2	2	0	Haemolysin	XhlA
PIN_2	PF10130.9	gi|564290153|ref|YP_008876442.1|	-	5.8e-33	114.0	2.2	6.8e-33	113.7	2.2	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.6	gi|564290153|ref|YP_008876442.1|	-	4.2e-08	34.0	1.4	4.2e-08	34.0	1.4	1.5	1	1	1	2	2	2	1	PIN	domain
PIN	PF01850.21	gi|564290153|ref|YP_008876442.1|	-	3.6e-07	30.7	2.4	5.2e-07	30.2	2.4	1.2	1	0	0	1	1	1	1	PIN	domain
IL5	PF02025.15	gi|564290153|ref|YP_008876442.1|	-	0.081	13.2	0.0	0.13	12.5	0.0	1.3	1	0	0	1	1	1	0	Interleukin	5
DUF4256	PF14066.6	gi|564290154|ref|YP_008876443.1|	-	0.017	14.8	0.4	0.017	14.8	0.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4256)
CARD_2	PF16739.5	gi|564290154|ref|YP_008876443.1|	-	0.021	14.8	0.1	0.028	14.4	0.1	1.2	1	0	0	1	1	1	0	Caspase	recruitment	domain
EnY2	PF10163.9	gi|564290154|ref|YP_008876443.1|	-	0.033	14.6	0.8	0.04	14.3	0.8	1.1	1	0	0	1	1	1	0	Transcription	factor	e(y)2
CARD	PF00619.21	gi|564290154|ref|YP_008876443.1|	-	0.066	13.3	0.3	0.073	13.1	0.3	1.1	1	0	0	1	1	1	0	Caspase	recruitment	domain
MS_channel	PF00924.18	gi|564290155|ref|YP_008876444.1|	-	1e-54	185.3	0.1	1.4e-54	184.8	0.1	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
CRS1_YhbY	PF01985.21	gi|564290156|ref|YP_008876445.1|	-	2.5e-11	43.6	0.0	3.1e-11	43.3	0.0	1.0	1	0	0	1	1	1	1	CRS1	/	YhbY	(CRM)	domain
Tubulin	PF00091.25	gi|564290156|ref|YP_008876445.1|	-	0.012	15.8	0.0	0.014	15.6	0.0	1.1	1	0	0	1	1	1	0	Tubulin/FtsZ	family,	GTPase	domain
Glyco_hydro_10	PF00331.20	gi|564290156|ref|YP_008876445.1|	-	0.087	12.0	0.0	0.087	12.0	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	10
CelTOS	PF18659.1	gi|564290156|ref|YP_008876445.1|	-	0.16	12.4	0.6	0.6	10.6	0.8	1.7	1	1	1	2	2	2	0	Cell-traversal	protein	for	ookinetes	and	sporozoites
Rpr2	PF04032.16	gi|564290157|ref|YP_008876446.1|	-	7.6e-13	48.6	0.6	9.5e-13	48.2	0.6	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Glyco_trans_1_4	PF13692.6	gi|564290158|ref|YP_008876447.1|	-	2e-20	73.6	0.0	6e-19	68.8	0.0	2.3	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|564290158|ref|YP_008876447.1|	-	3.3e-19	69.1	0.0	5.1e-18	65.2	0.0	2.4	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|564290158|ref|YP_008876447.1|	-	3.3e-16	59.4	0.2	7.4e-16	58.3	0.2	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564290158|ref|YP_008876447.1|	-	4.6e-16	59.3	0.1	9.6e-16	58.2	0.1	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564290158|ref|YP_008876447.1|	-	5.6e-09	36.6	0.1	1.5e-08	35.3	0.1	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
MFS_1	PF07690.16	gi|564290159|ref|YP_008876448.1|	-	3.1e-19	69.1	65.4	9.8e-10	37.9	35.4	3.0	1	1	2	3	3	3	3	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564290159|ref|YP_008876448.1|	-	2e-08	33.5	16.6	3.4e-05	22.9	10.6	2.2	2	0	0	2	2	2	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|564290159|ref|YP_008876448.1|	-	0.00036	19.5	2.5	0.00036	19.5	2.5	3.5	2	2	2	4	4	4	1	Sugar	(and	other)	transporter
Nuc_H_symport	PF03825.16	gi|564290159|ref|YP_008876448.1|	-	0.0012	17.9	2.6	0.0028	16.7	2.6	1.6	1	0	0	1	1	1	1	Nucleoside	H+	symporter
MFS_2	PF13347.6	gi|564290159|ref|YP_008876448.1|	-	0.0056	15.3	7.4	0.0056	15.3	7.4	2.7	3	0	0	3	3	3	1	MFS/sugar	transport	protein
Glycos_transf_1	PF00534.20	gi|564290160|ref|YP_008876449.1|	-	4.4e-27	94.7	0.0	1.1e-26	93.3	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564290160|ref|YP_008876449.1|	-	4.5e-27	95.1	0.2	1.2e-26	93.7	0.1	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.6	gi|564290160|ref|YP_008876449.1|	-	7.5e-21	75.0	0.0	6.3e-19	68.7	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|564290160|ref|YP_008876449.1|	-	5.6e-17	62.6	0.8	1.9e-15	57.6	0.4	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564290160|ref|YP_008876449.1|	-	3.5e-05	24.1	0.0	9.3e-05	22.7	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564290160|ref|YP_008876449.1|	-	0.0019	18.2	0.0	0.0072	16.4	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferase	4-like
Peptidase_M48	PF01435.18	gi|564290162|ref|YP_008876451.1|	-	1.3e-25	90.3	0.0	5.5e-25	88.3	0.0	1.8	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|564290162|ref|YP_008876451.1|	-	3.9e-06	26.3	0.0	8e-06	25.2	0.0	1.6	1	0	0	1	1	1	1	BlaR1	peptidase	M56
DUF45	PF01863.17	gi|564290162|ref|YP_008876451.1|	-	0.002	18.2	0.0	0.0031	17.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF45
SprT-like	PF10263.9	gi|564290162|ref|YP_008876451.1|	-	0.052	13.4	0.0	0.085	12.7	0.0	1.3	1	0	0	1	1	1	0	SprT-like	family
DUF2268	PF10026.9	gi|564290162|ref|YP_008876451.1|	-	0.21	11.1	0.0	0.33	10.5	0.0	1.2	1	0	0	1	1	1	0	Predicted	Zn-dependent	protease	(DUF2268)
Amidase	PF01425.21	gi|564290163|ref|YP_008876452.1|	-	7e-145	483.4	0.5	8.6e-145	483.1	0.5	1.0	1	0	0	1	1	1	1	Amidase
Glu-tRNAGln	PF02686.15	gi|564290164|ref|YP_008876453.1|	-	1.9e-13	50.4	3.1	3.2e-13	49.7	3.1	1.3	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
TFIIB	PF00382.19	gi|564290165|ref|YP_008876454.1|	-	7.5e-42	141.2	0.1	1e-20	73.6	0.1	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564290165|ref|YP_008876454.1|	-	7.7e-18	63.7	3.7	1.8e-17	62.5	3.7	1.7	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_C	PF02984.19	gi|564290165|ref|YP_008876454.1|	-	0.0051	16.9	0.0	0.056	13.5	0.0	2.1	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|564290165|ref|YP_008876454.1|	-	0.0058	16.1	0.1	0.0058	16.1	0.1	3.8	5	0	0	5	5	5	1	Sigma-70,	region	4
zf_UBZ	PF18439.1	gi|564290165|ref|YP_008876454.1|	-	0.018	14.6	1.4	2.7	7.6	0.1	2.4	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
A2L_zn_ribbon	PF08792.10	gi|564290165|ref|YP_008876454.1|	-	0.062	13.0	1.7	0.17	11.6	1.7	1.7	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
HTH_Tnp_ISL3	PF13542.6	gi|564290165|ref|YP_008876454.1|	-	0.07	12.6	0.1	0.22	10.9	0.1	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
RNA_POL_M_15KD	PF02150.16	gi|564290165|ref|YP_008876454.1|	-	0.23	11.3	1.5	0.47	10.4	1.5	1.5	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Zn-ribbon_8	PF09723.10	gi|564290165|ref|YP_008876454.1|	-	0.57	10.3	5.1	2.7	8.2	0.7	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
NUDIX	PF00293.28	gi|564290166|ref|YP_008876455.1|	-	2.4e-14	53.5	0.3	3.3e-14	53.1	0.3	1.2	1	0	0	1	1	1	1	NUDIX	domain
DUF2061	PF09834.9	gi|564290167|ref|YP_008876456.1|	-	1.1e-17	64.2	3.8	1.3e-17	64.0	3.8	1.1	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2061)
Asn_synthase	PF00733.21	gi|564290168|ref|YP_008876457.1|	-	2e-34	119.9	5.2	8.3e-20	71.7	1.1	2.1	1	1	1	2	2	2	2	Asparagine	synthase
PSK_trans_fac	PF07704.11	gi|564290168|ref|YP_008876457.1|	-	0.035	14.9	0.6	0.035	14.9	0.6	3.3	2	1	2	4	4	4	0	Rv0623-like	transcription	factor
PHP_C	PF13263.6	gi|564290169|ref|YP_008876458.1|	-	3.6e-24	84.3	0.8	2.7e-23	81.5	0.5	2.3	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.19	gi|564290169|ref|YP_008876458.1|	-	4.5e-08	33.6	0.0	5.4e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	PHP	domain
Radical_SAM	PF04055.21	gi|564290170|ref|YP_008876459.1|	-	3.7e-22	79.5	0.1	3e-21	76.5	0.0	2.2	2	1	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.6	gi|564290170|ref|YP_008876459.1|	-	9.4e-11	42.1	0.0	2.3e-10	40.9	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.6	gi|564290170|ref|YP_008876459.1|	-	5e-06	26.6	0.0	2.7e-05	24.3	0.0	2.1	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.6	gi|564290170|ref|YP_008876459.1|	-	4.4e-05	23.9	0.0	0.00011	22.6	0.0	1.7	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
BRCC36_C	PF18110.1	gi|564290170|ref|YP_008876459.1|	-	0.047	13.8	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	BRCC36	C-terminal	helical	domain
PaaB	PF06243.11	gi|564290171|ref|YP_008876460.1|	-	3e-09	37.0	0.0	3.3e-09	36.8	0.0	1.1	1	0	0	1	1	1	1	Phenylacetic	acid	degradation	B
Cu-oxidase_2	PF07731.14	gi|564290172|ref|YP_008876461.1|	-	2e-29	102.0	14.1	2.3e-20	72.7	2.7	3.0	2	1	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase_3	PF07732.15	gi|564290172|ref|YP_008876461.1|	-	6.6e-23	81.0	6.2	6.8e-18	64.8	1.3	2.4	2	0	0	2	2	2	2	Multicopper	oxidase
Cu-oxidase	PF00394.22	gi|564290172|ref|YP_008876461.1|	-	3.1e-09	37.2	0.0	8.5e-09	35.7	0.0	1.7	2	0	0	2	2	2	1	Multicopper	oxidase
TAT_signal	PF10518.9	gi|564290172|ref|YP_008876461.1|	-	0.0003	20.5	1.4	0.00047	19.9	1.4	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cupredoxin_1	PF13473.6	gi|564290172|ref|YP_008876461.1|	-	0.0053	16.9	0.1	0.21	11.7	0.0	2.7	2	2	0	2	2	2	1	Cupredoxin-like	domain
HTH_20	PF12840.7	gi|564290173|ref|YP_008876462.1|	-	1.5e-08	34.5	0.1	2.5e-08	33.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290173|ref|YP_008876462.1|	-	1e-05	25.2	0.1	1.9e-05	24.4	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|564290173|ref|YP_008876462.1|	-	0.00022	21.0	0.1	0.00035	20.4	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4	PF04545.16	gi|564290173|ref|YP_008876462.1|	-	0.002	17.6	0.0	0.0034	16.9	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.7	gi|564290173|ref|YP_008876462.1|	-	0.054	13.4	0.1	0.075	12.9	0.1	1.3	1	0	0	1	1	1	0	MarR	family
HTH_7	PF02796.15	gi|564290173|ref|YP_008876462.1|	-	0.081	13.0	0.0	0.14	12.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
SNARE_assoc	PF09335.11	gi|564290174|ref|YP_008876463.1|	-	0.044	14.3	3.5	0.12	12.8	3.4	1.8	1	1	0	1	1	1	0	SNARE	associated	Golgi	protein
DUF5353	PF17304.2	gi|564290174|ref|YP_008876463.1|	-	0.17	11.7	3.1	0.1	12.4	1.4	1.5	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5353)
CrgA	PF06781.12	gi|564290174|ref|YP_008876463.1|	-	0.35	10.9	1.4	0.4	10.8	0.6	1.5	1	1	0	1	1	1	0	Cell	division	protein	CrgA
TraL	PF07178.11	gi|564290174|ref|YP_008876463.1|	-	1.3	9.5	5.3	2.7	8.5	0.1	2.5	1	1	1	2	2	2	0	TraL	protein
CPP1-like	PF11833.8	gi|564290175|ref|YP_008876464.1|	-	0.0016	18.1	2.8	0.0018	18.0	2.8	1.1	1	0	0	1	1	1	1	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
DHNA	PF04038.12	gi|564290175|ref|YP_008876464.1|	-	0.12	12.9	0.1	0.17	12.4	0.1	1.2	1	0	0	1	1	1	0	Dihydroneopterin	aldolase
DUF3302	PF11742.8	gi|564290176|ref|YP_008876465.1|	-	5	7.3	8.2	0.23	11.6	0.8	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3302)
DUF2249	PF10006.9	gi|564290177|ref|YP_008876466.1|	-	1.2e-12	47.5	0.4	1.9e-12	46.8	0.4	1.4	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|564290177|ref|YP_008876466.1|	-	0.00026	20.7	0.0	0.00087	19.1	0.0	1.7	2	0	0	2	2	2	1	Sulfurtransferase	TusA
GlutR_dimer	PF00745.20	gi|564290178|ref|YP_008876467.1|	-	1.3e-10	41.6	1.2	1.5e-10	41.4	1.2	1.0	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
Mg_chelatase_C	PF13335.6	gi|564290178|ref|YP_008876467.1|	-	0.0044	17.6	1.5	0.0056	17.3	1.5	1.1	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI	C-terminal
PriC	PF07445.12	gi|564290178|ref|YP_008876467.1|	-	0.006	16.5	1.5	0.0073	16.2	1.5	1.2	1	0	0	1	1	1	1	Primosomal	replication	protein	priC
TetR_C_7	PF14246.6	gi|564290178|ref|YP_008876467.1|	-	0.027	14.5	0.8	0.03	14.3	0.8	1.1	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
ANAPC2	PF08672.11	gi|564290178|ref|YP_008876467.1|	-	0.097	13.2	0.1	0.16	12.5	0.1	1.4	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
HU-DNA_bdg	PF14848.6	gi|564290178|ref|YP_008876467.1|	-	0.11	12.5	0.3	8.7	6.4	0.1	2.0	1	1	1	2	2	2	0	DNA-binding	domain
Cupin_2	PF07883.11	gi|564290179|ref|YP_008876468.1|	-	6e-11	41.9	0.0	1.1e-10	41.1	0.0	1.5	2	0	0	2	2	2	1	Cupin	domain
AraC_binding_2	PF14525.6	gi|564290179|ref|YP_008876468.1|	-	0.00037	20.2	0.0	0.00037	20.2	0.0	1.2	1	0	0	1	1	1	1	AraC-binding-like	domain
Pirin_C_2	PF17954.1	gi|564290179|ref|YP_008876468.1|	-	0.0018	18.4	0.0	0.003	17.7	0.0	1.3	1	0	0	1	1	1	1	Quercetinase	C-terminal	cupin	domain
HutD	PF05962.11	gi|564290179|ref|YP_008876468.1|	-	0.12	12.4	0.0	0.16	11.9	0.0	1.4	1	1	0	1	1	1	0	HutD
Cupin_3	PF05899.12	gi|564290179|ref|YP_008876468.1|	-	0.13	12.0	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
DUF2249	PF10006.9	gi|564290180|ref|YP_008876469.1|	-	4.5e-24	84.1	0.1	5e-24	84.0	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
TusA	PF01206.17	gi|564290180|ref|YP_008876469.1|	-	0.1	12.4	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Sulfurtransferase	TusA
DUF3978	PF13123.6	gi|564290183|ref|YP_008876472.1|	-	0.18	11.5	0.0	0.25	11.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3978)
AIRS	PF00586.24	gi|564290184|ref|YP_008876473.1|	-	2e-40	137.3	5.1	7.1e-23	81.1	0.1	3.0	3	0	0	3	3	3	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.22	gi|564290184|ref|YP_008876473.1|	-	1.5e-39	135.6	6.9	3.4e-31	108.5	1.1	2.4	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
FGAR-AT_linker	PF18072.1	gi|564290184|ref|YP_008876473.1|	-	7.4e-08	32.8	0.5	2.2e-07	31.3	0.5	1.9	1	0	0	1	1	1	1	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
GHMP_kinases_C	PF08544.13	gi|564290184|ref|YP_008876473.1|	-	0.15	12.4	0.9	3.6	8.0	0.0	2.6	2	0	0	2	2	2	0	GHMP	kinases	C	terminal
HATPase_c	PF02518.26	gi|564290185|ref|YP_008876474.1|	-	3.3e-19	69.5	0.0	6.5e-19	68.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564290185|ref|YP_008876474.1|	-	2.5e-11	43.5	3.8	1.7e-10	40.7	0.9	2.9	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|564290185|ref|YP_008876474.1|	-	1.1e-05	25.7	0.0	2.2e-05	24.6	0.0	1.5	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.10	gi|564290185|ref|YP_008876474.1|	-	6.9e-05	23.1	1.1	0.00013	22.2	0.1	2.1	2	1	1	3	3	3	1	PAS	fold
PAS_8	PF13188.7	gi|564290185|ref|YP_008876474.1|	-	0.00045	20.2	0.1	0.0028	17.7	0.0	2.3	2	0	0	2	2	2	1	PAS	domain
PAS_3	PF08447.12	gi|564290185|ref|YP_008876474.1|	-	0.0017	18.6	0.0	0.006	16.8	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
HATPase_c_2	PF13581.6	gi|564290185|ref|YP_008876474.1|	-	0.0061	16.5	0.0	0.014	15.4	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|564290185|ref|YP_008876474.1|	-	0.019	14.8	0.0	0.047	13.5	0.0	1.7	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FIST	PF08495.10	gi|564290186|ref|YP_008876475.1|	-	3.9e-28	98.6	3.1	1.1e-27	97.1	0.8	2.1	2	0	0	2	2	2	1	FIST	N	domain
FIST_C	PF10442.9	gi|564290186|ref|YP_008876475.1|	-	1.7e-20	73.3	0.1	4.1e-20	72.1	0.1	1.7	1	0	0	1	1	1	1	FIST	C	domain
His_biosynth	PF00977.21	gi|564290187|ref|YP_008876476.1|	-	8.8e-80	267.4	0.4	1e-79	267.3	0.4	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Dus	PF01207.17	gi|564290187|ref|YP_008876476.1|	-	8e-08	31.7	0.0	8.5e-05	21.8	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.14	gi|564290187|ref|YP_008876476.1|	-	1.5e-06	27.7	1.4	0.0005	19.5	0.3	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|564290187|ref|YP_008876476.1|	-	7e-06	25.6	2.1	0.0023	17.4	0.1	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
G3P_antiterm	PF04309.12	gi|564290187|ref|YP_008876476.1|	-	0.0015	18.0	0.1	0.0052	16.2	0.1	1.8	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
TMP-TENI	PF02581.17	gi|564290187|ref|YP_008876476.1|	-	0.0048	16.2	0.2	0.13	11.5	0.0	2.1	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
IMPDH	PF00478.25	gi|564290187|ref|YP_008876476.1|	-	0.012	14.6	0.4	0.025	13.6	0.1	1.6	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
DHO_dh	PF01180.21	gi|564290187|ref|YP_008876476.1|	-	0.016	14.5	0.5	0.031	13.5	0.0	1.6	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
PcrB	PF01884.17	gi|564290187|ref|YP_008876476.1|	-	0.085	12.3	0.1	0.14	11.6	0.1	1.3	1	0	0	1	1	1	0	PcrB	family
zinc_ribbon_2	PF13240.6	gi|564290188|ref|YP_008876477.1|	-	1e-06	28.3	18.5	0.001	18.7	5.6	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|564290188|ref|YP_008876477.1|	-	0.0043	17.1	9.1	0.0083	16.1	9.1	1.5	1	1	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|564290188|ref|YP_008876477.1|	-	0.11	12.6	9.7	0.34	11.0	1.4	2.3	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|564290188|ref|YP_008876477.1|	-	0.53	10.4	13.5	1.6	8.9	2.8	2.6	2	0	0	2	2	2	0	Zinc	ribbon	domain
Cytochrom_c3_2	PF14537.6	gi|564290188|ref|YP_008876477.1|	-	3.6	8.1	10.4	6.9	7.2	2.1	2.2	1	1	1	2	2	2	0	Cytochrome	c3
DUF1451	PF07295.11	gi|564290188|ref|YP_008876477.1|	-	5.2	7.1	12.4	0.35	10.9	2.9	2.2	1	1	1	2	2	2	0	Zinc-ribbon	containing	domain
RNA_pol_L_2	PF13656.6	gi|564290189|ref|YP_008876478.1|	-	1e-16	60.4	0.0	1.2e-16	60.2	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.24	gi|564290189|ref|YP_008876478.1|	-	0.00017	20.9	0.0	0.00027	20.3	0.0	1.3	1	1	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
zf-C2H2	PF00096.26	gi|564290190|ref|YP_008876479.1|	-	4.5e-05	23.7	0.1	6.6e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.6	gi|564290190|ref|YP_008876479.1|	-	0.031	15.1	0.2	0.046	14.6	0.2	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
PyrI_C	PF02748.15	gi|564290190|ref|YP_008876479.1|	-	0.078	12.9	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
V_ATPase_prox	PF18274.1	gi|564290190|ref|YP_008876479.1|	-	0.22	11.5	1.6	0.51	10.3	1.1	1.7	1	1	1	2	2	2	0	Vacuolar	ATPase	Subunit	I	N-terminal	proximal	lobe
COX3	PF00510.18	gi|564290192|ref|YP_008876481.1|	-	1.6e-35	123.2	20.2	2.1e-35	122.8	20.2	1.2	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	III
Zn_Tnp_IS1595	PF12760.7	gi|564290193|ref|YP_008876482.1|	-	0.017	15.1	0.0	0.029	14.4	0.0	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564290193|ref|YP_008876482.1|	-	0.05	13.7	0.2	0.073	13.2	0.2	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
LptE	PF04390.12	gi|564290194|ref|YP_008876483.1|	-	0.0023	18.6	1.4	1.6	9.4	1.6	2.2	1	1	0	1	1	1	1	Lipopolysaccharide-assembly
PGF-CTERM	PF18204.1	gi|564290194|ref|YP_008876483.1|	-	0.062	13.3	1.5	0.062	13.3	1.5	1.8	2	0	0	2	2	2	0	PGF-CTERM	motif
ADH_N	PF08240.12	gi|564290195|ref|YP_008876484.1|	-	2.5e-29	101.3	1.2	2.5e-29	101.3	1.2	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564290195|ref|YP_008876484.1|	-	4.3e-17	62.3	1.0	6.4e-17	61.8	0.3	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|564290195|ref|YP_008876484.1|	-	3.1e-07	31.5	0.2	5.4e-07	30.7	0.2	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NADH_4Fe-4S	PF10589.9	gi|564290195|ref|YP_008876484.1|	-	0.64	10.1	4.7	2.2	8.4	4.7	1.9	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Toxin_25	PF08095.11	gi|564290196|ref|YP_008876485.1|	-	1.1	9.2	8.2	9	6.4	1.4	2.7	2	0	0	2	2	2	0	Hefutoxin	family
Usp	PF00582.26	gi|564290197|ref|YP_008876486.1|	-	9.9e-19	68.2	2.3	1.3e-18	67.8	2.3	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
B12-binding	PF02310.19	gi|564290197|ref|YP_008876486.1|	-	0.013	15.5	0.2	0.02	14.9	0.1	1.5	1	1	0	1	1	1	0	B12	binding	domain
ABC_tran	PF00005.27	gi|564290198|ref|YP_008876487.1|	-	1.2e-31	110.0	0.0	1.6e-31	109.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290198|ref|YP_008876487.1|	-	2.3e-14	53.9	0.8	8.6e-07	29.0	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564290198|ref|YP_008876487.1|	-	5.9e-06	25.9	0.3	0.00013	21.4	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564290198|ref|YP_008876487.1|	-	6.7e-06	26.0	0.0	8.9e-06	25.7	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564290198|ref|YP_008876487.1|	-	8.3e-05	22.3	0.0	0.00019	21.1	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.6	gi|564290198|ref|YP_008876487.1|	-	0.0002	21.1	0.0	0.00028	20.6	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290198|ref|YP_008876487.1|	-	0.0003	20.7	0.0	0.00065	19.6	0.0	1.5	2	0	0	2	2	2	1	RsgA	GTPase
AAA_23	PF13476.6	gi|564290198|ref|YP_008876487.1|	-	0.0014	19.2	0.0	0.002	18.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564290198|ref|YP_008876487.1|	-	0.0024	18.3	0.0	0.03	14.7	0.0	2.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|564290198|ref|YP_008876487.1|	-	0.0046	17.2	0.1	0.026	14.8	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|564290198|ref|YP_008876487.1|	-	0.033	14.1	0.0	0.072	13.0	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.6	gi|564290198|ref|YP_008876487.1|	-	0.052	13.9	0.1	0.085	13.2	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|564290198|ref|YP_008876487.1|	-	0.067	13.3	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|564290198|ref|YP_008876487.1|	-	0.075	12.7	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_27	PF13514.6	gi|564290198|ref|YP_008876487.1|	-	0.084	12.4	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.6	gi|564290198|ref|YP_008876487.1|	-	0.085	13.0	0.0	0.16	12.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.22	gi|564290198|ref|YP_008876487.1|	-	0.11	11.6	0.0	0.19	10.9	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|564290198|ref|YP_008876487.1|	-	0.13	12.7	0.0	0.23	11.9	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
ATP_bind_1	PF03029.17	gi|564290198|ref|YP_008876487.1|	-	0.14	12.0	0.2	0.24	11.2	0.2	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_5	PF07728.14	gi|564290198|ref|YP_008876487.1|	-	0.14	12.1	0.0	0.26	11.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MukB	PF04310.12	gi|564290198|ref|YP_008876487.1|	-	0.16	11.8	0.0	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	MukB	N-terminal
NTPase_1	PF03266.15	gi|564290198|ref|YP_008876487.1|	-	0.18	11.7	0.3	6.9	6.6	0.0	2.8	2	1	1	3	3	3	0	NTPase
AAA_7	PF12775.7	gi|564290198|ref|YP_008876487.1|	-	0.2	11.1	0.0	0.31	10.5	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
ABC_tran	PF00005.27	gi|564290199|ref|YP_008876488.1|	-	8.8e-32	110.5	0.0	1.3e-31	110.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290199|ref|YP_008876488.1|	-	3.6e-11	43.4	2.1	1.8e-05	24.7	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|564290199|ref|YP_008876488.1|	-	5.1e-10	39.0	0.1	1.3e-09	37.8	0.1	1.7	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.6	gi|564290199|ref|YP_008876488.1|	-	6.8e-07	30.0	0.1	1.3e-06	29.1	0.0	1.4	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|564290199|ref|YP_008876488.1|	-	7.8e-06	25.5	0.0	1.6e-05	24.5	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|564290199|ref|YP_008876488.1|	-	0.00016	21.2	0.3	0.051	13.0	0.1	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
MMR_HSR1	PF01926.23	gi|564290199|ref|YP_008876488.1|	-	0.00071	19.6	0.1	0.0021	18.2	0.1	2.0	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|564290199|ref|YP_008876488.1|	-	0.0012	19.3	0.0	0.0017	18.8	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564290199|ref|YP_008876488.1|	-	0.0031	17.4	0.0	0.0052	16.7	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_15	PF13175.6	gi|564290199|ref|YP_008876488.1|	-	0.0044	16.8	0.1	0.25	11.0	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|564290199|ref|YP_008876488.1|	-	0.092	12.7	0.1	9.1	6.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
FeoB_N	PF02421.18	gi|564290199|ref|YP_008876488.1|	-	0.1	12.2	1.9	0.46	10.0	0.2	2.2	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
AAA_14	PF13173.6	gi|564290199|ref|YP_008876488.1|	-	0.12	12.4	0.0	0.45	10.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|564290199|ref|YP_008876488.1|	-	0.13	11.8	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.16	gi|564290200|ref|YP_008876489.1|	-	2.9e-37	128.3	36.7	3.7e-37	127.9	36.7	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Lysis_col	PF02402.16	gi|564290200|ref|YP_008876489.1|	-	0.034	13.8	0.8	0.1	12.3	0.1	2.1	2	0	0	2	2	2	0	Lysis	protein
BPD_transp_2	PF02653.16	gi|564290201|ref|YP_008876490.1|	-	3.8e-42	144.3	41.1	4.8e-42	144.0	41.1	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF1656	PF07869.12	gi|564290201|ref|YP_008876490.1|	-	0.02	14.9	0.4	0.02	14.9	0.4	4.3	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF1656)
Peripla_BP_6	PF13458.6	gi|564290202|ref|YP_008876491.1|	-	1.6e-48	166.1	1.7	2e-48	165.8	1.7	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|564290202|ref|YP_008876491.1|	-	1.9e-15	56.9	0.1	9e-15	54.6	0.1	1.8	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|564290202|ref|YP_008876491.1|	-	4.4e-13	48.9	0.4	1.4e-12	47.3	0.4	1.7	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
SPAN-X	PF07458.12	gi|564290202|ref|YP_008876491.1|	-	0.09	13.2	0.0	0.16	12.4	0.0	1.3	1	0	0	1	1	1	0	Sperm	protein	associated	with	nucleus,	mapped	to	X	chromosome
TAT_signal	PF10518.9	gi|564290202|ref|YP_008876491.1|	-	0.11	12.4	1.1	0.29	11.0	1.1	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Na_sulph_symp	PF00939.19	gi|564290203|ref|YP_008876492.1|	-	2e-79	267.8	38.0	2.4e-79	267.6	38.0	1.0	1	0	0	1	1	1	1	Sodium:sulfate	symporter	transmembrane	region
CitMHS	PF03600.16	gi|564290203|ref|YP_008876492.1|	-	8.6e-38	130.2	43.5	8.6e-38	130.2	43.5	2.5	2	1	1	3	3	3	2	Citrate	transporter
HTH_31	PF13560.6	gi|564290204|ref|YP_008876493.1|	-	0.0061	16.9	0.1	0.008	16.5	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|564290204|ref|YP_008876493.1|	-	0.0072	16.3	0.1	0.011	15.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|564290204|ref|YP_008876493.1|	-	0.038	14.1	0.0	0.05	13.7	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix
MLD	PF11647.8	gi|564290204|ref|YP_008876493.1|	-	0.1	12.9	0.2	0.19	12.0	0.2	1.4	1	1	0	1	1	1	0	Membrane	Localization	Domain
Met_10	PF02475.16	gi|564290205|ref|YP_008876494.1|	-	1.3e-58	198.1	0.0	1.6e-58	197.7	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Trm5_N	PF18093.1	gi|564290205|ref|YP_008876494.1|	-	1.7e-13	50.2	0.0	5.7e-13	48.5	0.0	1.9	2	0	0	2	2	2	1	tRNA	methyltransferase	5	N-terminal	domain
Methyltransf_25	PF13649.6	gi|564290205|ref|YP_008876494.1|	-	3.9e-08	33.9	0.1	1.3e-07	32.3	0.1	1.9	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.10	gi|564290205|ref|YP_008876494.1|	-	2.4e-07	30.5	0.0	3.6e-07	29.9	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
MTS	PF05175.14	gi|564290205|ref|YP_008876494.1|	-	6.5e-06	25.8	0.0	5.8e-05	22.7	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|564290205|ref|YP_008876494.1|	-	2e-05	24.1	0.0	3.1e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_11	PF08241.12	gi|564290205|ref|YP_008876494.1|	-	6.6e-05	23.5	0.0	0.00016	22.3	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290205|ref|YP_008876494.1|	-	0.00015	21.6	0.0	0.00027	20.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|564290205|ref|YP_008876494.1|	-	0.0014	19.6	0.4	0.032	15.2	0.0	2.6	3	0	0	3	3	3	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|564290205|ref|YP_008876494.1|	-	0.0024	17.6	0.0	0.0041	16.8	0.0	1.4	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Cons_hypoth95	PF03602.15	gi|564290205|ref|YP_008876494.1|	-	0.0035	17.0	0.0	0.0085	15.8	0.0	1.6	2	0	0	2	2	2	1	Conserved	hypothetical	protein	95
DNA_methylase	PF00145.17	gi|564290205|ref|YP_008876494.1|	-	0.008	15.5	0.0	0.012	15.0	0.0	1.2	1	0	0	1	1	1	1	C-5	cytosine-specific	DNA	methylase
TRM	PF02005.16	gi|564290205|ref|YP_008876494.1|	-	0.022	13.9	0.0	0.045	12.9	0.0	1.5	2	0	0	2	2	2	0	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_18	PF12847.7	gi|564290205|ref|YP_008876494.1|	-	0.069	13.1	0.0	0.15	11.9	0.0	1.6	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564290205|ref|YP_008876494.1|	-	0.14	12.9	0.0	0.39	11.5	0.0	1.8	1	1	0	1	1	1	0	Methyltransferase	domain
MethyltransfD12	PF02086.15	gi|564290205|ref|YP_008876494.1|	-	0.25	11.0	0.0	0.34	10.5	0.0	1.2	1	0	0	1	1	1	0	D12	class	N6	adenine-specific	DNA	methyltransferase
TP_methylase	PF00590.20	gi|564290206|ref|YP_008876495.1|	-	1e-19	71.4	1.3	1.2e-19	71.1	1.3	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Exosortase_EpsH	PF09721.10	gi|564290207|ref|YP_008876496.1|	-	3.8e-17	62.7	24.5	1.4e-16	60.8	24.2	1.9	1	1	0	1	1	1	1	Transmembrane	exosortase	(Exosortase_EpsH)
PGF-CTERM	PF18204.1	gi|564290208|ref|YP_008876497.1|	-	0.0012	18.8	8.6	0.0021	18.0	8.6	1.4	1	0	0	1	1	1	1	PGF-CTERM	motif
Pilin_N	PF07790.11	gi|564290208|ref|YP_008876497.1|	-	0.021	15.7	5.0	0.14	13.1	0.4	4.3	2	1	0	2	2	2	0	Archaeal	Type	IV	pilin,	N-terminal
PGF-CTERM	PF18204.1	gi|564290209|ref|YP_008876498.1|	-	0.0012	18.7	8.6	0.0021	18.0	8.6	1.4	1	0	0	1	1	1	1	PGF-CTERM	motif
Trypan_PARP	PF05887.11	gi|564290209|ref|YP_008876498.1|	-	0.0017	18.4	24.8	0.0096	15.9	13.0	4.0	3	0	0	3	3	3	2	Procyclic	acidic	repetitive	protein	(PARP)
FtsK_SpoIIIE_N	PF12538.8	gi|564290209|ref|YP_008876498.1|	-	0.012	15.8	0.1	0.088	13.0	0.1	2.6	1	0	0	1	1	1	0	DNA	transporter
Pga1	PF10333.9	gi|564290209|ref|YP_008876498.1|	-	0.037	13.9	0.3	0.13	12.1	0.0	2.1	2	0	0	2	2	2	0	GPI-Mannosyltransferase	II	co-activator
Pilin_N	PF07790.11	gi|564290209|ref|YP_008876498.1|	-	0.14	13.1	0.2	0.14	13.1	0.2	4.4	4	1	0	4	4	4	0	Archaeal	Type	IV	pilin,	N-terminal
Glyoxalase	PF00903.25	gi|564290210|ref|YP_008876499.1|	-	1.1e-20	74.2	3.6	2.5e-12	47.1	0.4	2.3	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|564290210|ref|YP_008876499.1|	-	1.6e-08	35.3	2.9	0.00016	22.4	0.2	2.2	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.6	gi|564290210|ref|YP_008876499.1|	-	2.1e-08	34.4	1.6	0.0084	16.4	0.1	3.0	2	1	1	3	3	3	3	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.6	gi|564290210|ref|YP_008876499.1|	-	7.7e-06	26.1	1.0	0.37	10.9	0.1	4.0	2	2	1	3	3	3	2	Glyoxalase-like	domain
DUF1772	PF08592.11	gi|564290211|ref|YP_008876500.1|	-	0.63	10.3	10.0	0.32	11.3	4.2	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1772)
MMR_HSR1_Xtn	PF16897.5	gi|564290212|ref|YP_008876501.1|	-	9.2e-30	102.8	0.4	3e-29	101.1	0.1	2.0	2	0	0	2	2	2	1	C-terminal	region	of	MMR_HSR1	domain
MMR_HSR1	PF01926.23	gi|564290212|ref|YP_008876501.1|	-	1.4e-22	79.9	0.0	2.5e-22	79.1	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|564290212|ref|YP_008876501.1|	-	2.6e-16	59.4	0.0	4.6e-16	58.6	0.0	1.4	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|564290212|ref|YP_008876501.1|	-	2.4e-12	46.6	0.1	1.8e-11	43.8	0.0	2.1	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|564290212|ref|YP_008876501.1|	-	1e-05	25.5	0.1	0.027	14.4	0.1	2.7	2	0	0	2	2	2	2	RsgA	GTPase
Dynamin_N	PF00350.23	gi|564290212|ref|YP_008876501.1|	-	4.1e-05	23.7	0.0	0.12	12.4	0.0	2.5	2	0	0	2	2	2	2	Dynamin	family
MeaB	PF03308.16	gi|564290212|ref|YP_008876501.1|	-	0.0074	15.3	0.2	0.092	11.7	0.0	2.3	2	1	0	2	2	2	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AIG1	PF04548.16	gi|564290212|ref|YP_008876501.1|	-	0.01	15.2	0.0	0.016	14.6	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
AAA_28	PF13521.6	gi|564290212|ref|YP_008876501.1|	-	0.018	15.3	0.1	0.065	13.5	0.0	2.0	2	0	0	2	2	1	0	AAA	domain
Arf	PF00025.21	gi|564290212|ref|YP_008876501.1|	-	0.026	14.0	0.1	0.81	9.1	0.0	2.4	2	1	0	2	2	2	0	ADP-ribosylation	factor	family
ABC_tran	PF00005.27	gi|564290212|ref|YP_008876501.1|	-	0.029	14.9	0.0	0.079	13.5	0.0	1.7	2	0	0	2	2	2	0	ABC	transporter
AAA_16	PF13191.6	gi|564290212|ref|YP_008876501.1|	-	0.038	14.4	0.0	0.097	13.1	0.0	1.7	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|564290212|ref|YP_008876501.1|	-	0.051	14.1	0.2	0.53	10.8	0.2	2.4	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.19	gi|564290212|ref|YP_008876501.1|	-	0.069	12.7	0.8	1.9	8.0	0.1	2.6	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
SRPRB	PF09439.10	gi|564290212|ref|YP_008876501.1|	-	0.073	12.5	0.0	0.19	11.1	0.0	1.6	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Nairo_nucleo	PF02477.15	gi|564290212|ref|YP_008876501.1|	-	0.14	10.9	0.0	0.2	10.4	0.0	1.1	1	0	0	1	1	1	0	Nucleocapsid	N	protein
DUF2813	PF11398.8	gi|564290212|ref|YP_008876501.1|	-	0.19	10.9	0.0	0.36	10.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2813)
ATP_bind_1	PF03029.17	gi|564290212|ref|YP_008876501.1|	-	0.19	11.5	0.0	28	4.4	0.0	2.6	2	1	1	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
ABC_tran_CTD	PF16326.5	gi|564290212|ref|YP_008876501.1|	-	4.4	7.6	9.6	0.23	11.8	3.5	2.0	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Ribosomal_L11	PF00298.19	gi|564290214|ref|YP_008876503.1|	-	2.3e-20	72.9	0.0	3.6e-20	72.3	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
Ribosomal_L11_N	PF03946.14	gi|564290214|ref|YP_008876503.1|	-	2.4e-18	65.7	0.1	3.9e-18	65.0	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L1	PF00687.21	gi|564290215|ref|YP_008876504.1|	-	2e-40	138.7	0.0	2.5e-40	138.4	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.20	gi|564290216|ref|YP_008876505.1|	-	8.8e-22	77.1	0.0	1.8e-21	76.1	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L10
RL10P_insert	PF17777.1	gi|564290216|ref|YP_008876505.1|	-	9.4e-16	57.6	0.0	1.6e-15	56.9	0.0	1.4	1	0	0	1	1	1	1	Insertion	domain	in	60S	ribosomal	protein	L10P
DUF2457	PF10446.9	gi|564290216|ref|YP_008876505.1|	-	7.5	5.6	18.9	11	5.1	18.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
Cwf_Cwc_15	PF04889.12	gi|564290216|ref|YP_008876505.1|	-	7.6	6.2	11.6	13	5.5	11.6	1.3	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
Ribosomal_60s	PF00428.19	gi|564290217|ref|YP_008876506.1|	-	6.2e-17	62.0	17.8	8.4e-17	61.5	17.8	1.2	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
RRN3	PF05327.11	gi|564290217|ref|YP_008876506.1|	-	0.0082	14.7	4.7	0.0092	14.6	4.7	1.0	1	0	0	1	1	1	1	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
NOA36	PF06524.12	gi|564290217|ref|YP_008876506.1|	-	1.1	8.5	10.8	1.2	8.4	10.8	1.1	1	0	0	1	1	1	0	NOA36	protein
Sigma70_ner	PF04546.13	gi|564290217|ref|YP_008876506.1|	-	1.3	8.9	11.5	1.6	8.6	11.5	1.2	1	0	0	1	1	1	0	Sigma-70,	non-essential	region
CDC45	PF02724.14	gi|564290217|ref|YP_008876506.1|	-	7.6	4.7	7.0	8.2	4.6	7.0	1.0	1	0	0	1	1	1	0	CDC45-like	protein
DUF2457	PF10446.9	gi|564290217|ref|YP_008876506.1|	-	8.5	5.4	13.7	7.8	5.5	13.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2457)
CARDB	PF07705.11	gi|564290218|ref|YP_008876507.1|	-	6.9e-16	58.4	47.0	0.00025	21.3	1.5	8.3	7	1	2	9	9	9	6	CARDB
N_BRCA1_IG	PF16158.5	gi|564290218|ref|YP_008876507.1|	-	5.8e-05	23.8	8.2	0.016	15.9	0.1	5.4	7	0	0	7	7	7	2	Ig-like	domain	from	next	to	BRCA1	gene
Fn3-like	PF14310.6	gi|564290218|ref|YP_008876507.1|	-	0.00054	20.0	0.2	0.75	9.9	0.1	5.1	5	0	0	5	5	5	1	Fibronectin	type	III-like	domain
BsuPI	PF12690.7	gi|564290218|ref|YP_008876507.1|	-	0.00075	19.5	7.3	0.23	11.5	0.0	6.4	7	0	0	7	7	7	1	Intracellular	proteinase	inhibitor
DUF4981	PF16353.5	gi|564290218|ref|YP_008876507.1|	-	0.00088	19.7	6.6	8.6	6.9	0.1	6.0	7	0	0	7	7	7	1	Domain	of	unknown	function(DUF4981)
DUF4878	PF12870.7	gi|564290218|ref|YP_008876507.1|	-	0.031	14.6	4.4	0.18	12.1	0.2	3.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4878)
Transglut_C	PF00927.22	gi|564290218|ref|YP_008876507.1|	-	0.14	12.3	1.8	15	5.8	0.0	4.5	5	0	0	5	5	5	0	Transglutaminase	family,	C-terminal	ig	like	domain
DUF2393	PF09624.10	gi|564290218|ref|YP_008876507.1|	-	0.19	11.7	0.2	3.4	7.7	0.0	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2393)
NPCBM_assoc	PF10633.9	gi|564290218|ref|YP_008876507.1|	-	1.5	9.1	32.0	0.26	11.5	0.6	8.7	8	4	3	11	11	10	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF5001	PF16392.5	gi|564290218|ref|YP_008876507.1|	-	1.8	8.5	6.6	59	3.7	0.0	5.4	6	0	0	6	6	6	0	Ig-like	domain
Glyco_hydro_2	PF00703.21	gi|564290218|ref|YP_008876507.1|	-	3.7	8.3	25.7	1.7	9.4	0.2	6.8	7	0	0	7	7	7	0	Glycosyl	hydrolases	family	2
E1_DerP2_DerF2	PF02221.15	gi|564290218|ref|YP_008876507.1|	-	6.6	7.2	6.0	16	5.9	0.1	4.3	4	1	0	4	4	4	0	ML	domain
Bactofilin	PF04519.13	gi|564290224|ref|YP_008876513.1|	-	0.0001	22.5	5.4	0.0001	22.5	5.4	3.5	2	1	1	3	3	3	2	Polymer-forming	cytoskeletal
Ribosomal_S13_N	PF08069.12	gi|564290226|ref|YP_008876515.1|	-	9.4e-23	80.0	0.1	1.6e-22	79.3	0.1	1.4	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.22	gi|564290226|ref|YP_008876515.1|	-	4.5e-14	52.4	0.0	7.1e-14	51.8	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S15
DUF4298	PF14131.6	gi|564290226|ref|YP_008876515.1|	-	0.021	14.8	0.3	0.042	13.8	0.3	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4298)
STAT2_C	PF12188.8	gi|564290226|ref|YP_008876515.1|	-	0.058	13.3	0.1	0.12	12.4	0.1	1.5	1	0	0	1	1	1	0	Signal	transducer	and	activator	of	transcription	2	C	terminal
Gln_amidase	PF15644.6	gi|564290227|ref|YP_008876516.1|	-	0.15	13.1	1.9	0.46	11.5	1.1	2.4	1	1	1	2	2	2	0	Papain	fold	toxin	1,	glutamine	deamidase
PhageP22-tail	PF09251.10	gi|564290228|ref|YP_008876517.1|	-	0.071	11.5	0.0	0.071	11.5	0.0	1.0	1	0	0	1	1	1	0	Salmonella	phage	P22	tail-spike
Ribosomal_S3Ae	PF01015.18	gi|564290229|ref|YP_008876518.1|	-	3.4e-60	203.1	1.3	3.7e-60	203.0	1.3	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
RexA	PF15969.5	gi|564290229|ref|YP_008876518.1|	-	0.029	13.9	0.0	0.043	13.4	0.0	1.2	1	0	0	1	1	1	0	Intracellular	sensor	of	Lambda	phage,	Abi	component
Copper-bind	PF00127.20	gi|564290230|ref|YP_008876519.1|	-	1.3e-12	48.0	0.0	2.4e-12	47.1	0.0	1.4	1	1	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
TAT_signal	PF10518.9	gi|564290230|ref|YP_008876519.1|	-	0.0006	19.6	3.1	0.0013	18.5	3.1	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cupredoxin_1	PF13473.6	gi|564290230|ref|YP_008876519.1|	-	0.081	13.0	0.0	0.5	10.5	0.0	1.9	2	0	0	2	2	2	0	Cupredoxin-like	domain
ATP-grasp	PF02222.22	gi|564290231|ref|YP_008876520.1|	-	3.6e-56	189.4	0.0	5e-56	188.9	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
PurK_C	PF17769.1	gi|564290231|ref|YP_008876520.1|	-	1.7e-16	59.6	0.0	3.1e-16	58.8	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylaminoimidazole	carboxylase	C-terminal	domain
Dala_Dala_lig_C	PF07478.13	gi|564290231|ref|YP_008876520.1|	-	4e-08	33.0	0.0	2e-07	30.7	0.0	1.8	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
2-Hacid_dh_C	PF02826.19	gi|564290231|ref|YP_008876520.1|	-	0.00025	20.4	0.0	0.00042	19.7	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ATP-grasp_3	PF02655.14	gi|564290231|ref|YP_008876520.1|	-	0.00032	20.8	0.0	0.00048	20.2	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|564290231|ref|YP_008876520.1|	-	0.0012	18.4	0.0	0.002	17.7	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|564290231|ref|YP_008876520.1|	-	0.0089	15.5	0.0	0.014	14.9	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.10	gi|564290231|ref|YP_008876520.1|	-	0.18	11.4	0.0	0.3	10.6	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
3HCDH_N	PF02737.18	gi|564290231|ref|YP_008876520.1|	-	0.2	11.5	0.0	0.37	10.7	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
PMT_2	PF13231.6	gi|564290232|ref|YP_008876521.1|	-	9.6e-10	38.9	9.0	9.6e-10	38.9	9.0	2.7	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT	PF02366.18	gi|564290232|ref|YP_008876521.1|	-	6.8e-05	22.6	8.0	6.8e-05	22.6	8.0	1.7	2	0	0	2	2	2	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
COX7C	PF02935.16	gi|564290232|ref|YP_008876521.1|	-	1.2	9.4	4.7	11	6.3	0.1	3.0	2	0	0	2	2	2	0	Cytochrome	c	oxidase	subunit	VIIc
DMRL_synthase	PF00885.19	gi|564290233|ref|YP_008876522.1|	-	3.9e-31	107.8	0.3	4.3e-31	107.6	0.3	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
Aminotran_1_2	PF00155.21	gi|564290234|ref|YP_008876523.1|	-	4.6e-67	226.7	0.0	5.2e-67	226.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.21	gi|564290234|ref|YP_008876523.1|	-	0.0005	19.4	0.0	0.00092	18.6	0.0	1.4	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.20	gi|564290234|ref|YP_008876523.1|	-	0.0029	16.2	0.0	0.005	15.4	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Rsbr_N	PF08678.10	gi|564290234|ref|YP_008876523.1|	-	0.036	14.1	0.0	0.082	13.0	0.0	1.6	1	1	0	1	1	1	0	Rsbr	N	terminal
DUF3483	PF11982.8	gi|564291359|ref|YP_008876524.1|	-	0.07	12.7	3.4	0.056	13.1	1.9	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3483)
DUF3040	PF11239.8	gi|564291359|ref|YP_008876524.1|	-	0.59	10.5	13.6	1.3	9.3	1.6	3.0	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF3040)
CTP_transf_like	PF01467.26	gi|564290235|ref|YP_008876525.1|	-	4.5e-17	62.6	0.0	4.8e-17	62.5	0.0	1.0	1	0	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|564290235|ref|YP_008876525.1|	-	0.068	13.1	1.3	0.1	12.5	0.5	1.8	2	1	0	2	2	2	0	FAD	synthetase
Prok-JAB	PF14464.6	gi|564290236|ref|YP_008876526.1|	-	1e-08	34.9	0.0	1.5e-08	34.4	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
RadC	PF04002.15	gi|564290236|ref|YP_008876526.1|	-	0.048	13.6	0.0	0.072	13.0	0.0	1.4	1	0	0	1	1	1	0	RadC-like	JAB	domain
tRNA_anti-codon	PF01336.25	gi|564290237|ref|YP_008876527.1|	-	1.8e-12	47.1	0.3	3.9e-12	46.0	0.3	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DHH	PF01368.20	gi|564290237|ref|YP_008876527.1|	-	0.0038	17.4	0.2	0.0095	16.2	0.2	1.6	1	0	0	1	1	1	1	DHH	family
S1	PF00575.23	gi|564290237|ref|YP_008876527.1|	-	0.015	15.7	1.4	0.027	14.8	0.1	2.1	2	0	0	2	2	2	0	S1	RNA	binding	domain
tRNA_anti_2	PF13742.6	gi|564290237|ref|YP_008876527.1|	-	0.079	13.2	0.0	0.18	12.1	0.0	1.5	1	0	0	1	1	1	0	OB-fold	nucleic	acid	binding	domain
PLDc_2	PF13091.6	gi|564290238|ref|YP_008876528.1|	-	2e-39	134.6	0.0	5.7e-22	78.0	0.0	2.2	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.22	gi|564290238|ref|YP_008876528.1|	-	3.6e-05	23.8	0.2	0.0034	17.5	0.0	2.5	2	0	0	2	2	2	1	Phospholipase	D	Active	site	motif
Regulator_TrmB	PF11495.8	gi|564290238|ref|YP_008876528.1|	-	0.055	12.6	0.0	5	6.2	0.0	2.4	2	0	0	2	2	2	0	Archaeal	transcriptional	regulator	TrmB
PP_kinase_C_1	PF17941.1	gi|564290238|ref|YP_008876528.1|	-	0.061	12.9	0.0	9.4	5.8	0.0	2.4	2	1	0	2	2	2	0	Polyphosphate	kinase	C-terminal	domain	1
HEAT_2	PF13646.6	gi|564290239|ref|YP_008876529.1|	-	1.8e-17	63.5	10.5	1.5e-09	38.1	3.2	3.1	2	1	1	3	3	3	2	HEAT	repeats
HEAT_PBS	PF03130.16	gi|564290239|ref|YP_008876529.1|	-	1.2e-10	41.1	10.8	0.026	15.2	1.3	5.8	5	0	0	5	5	5	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.22	gi|564290239|ref|YP_008876529.1|	-	8.4e-07	28.7	0.1	0.06	13.6	0.0	3.6	3	0	0	3	3	3	2	HEAT	repeat
Arm	PF00514.23	gi|564290239|ref|YP_008876529.1|	-	4.3e-05	23.4	0.1	0.076	13.1	0.0	3.3	1	1	2	3	3	3	2	Armadillo/beta-catenin-like	repeat
HEAT_EZ	PF13513.6	gi|564290239|ref|YP_008876529.1|	-	6.2e-05	23.4	1.5	0.00065	20.2	0.1	2.9	2	1	0	2	2	2	1	HEAT-like	repeat
DUF883	PF05957.13	gi|564290239|ref|YP_008876529.1|	-	0.007	16.9	0.5	0.007	16.9	0.5	3.3	2	1	2	4	4	4	1	Bacterial	protein	of	unknown	function	(DUF883)
Xan_ur_permease	PF00860.20	gi|564290240|ref|YP_008876530.1|	-	5.9e-82	275.4	33.1	5.9e-82	275.4	33.1	1.7	2	0	0	2	2	2	1	Permease	family
AIRC	PF00731.20	gi|564290241|ref|YP_008876532.1|	-	2.5e-48	163.4	0.0	3.4e-48	163.0	0.0	1.2	1	0	0	1	1	1	1	AIR	carboxylase
Oxidored_q4	PF00507.19	gi|564290242|ref|YP_008876533.1|	-	1.2e-30	105.6	0.3	1.7e-30	105.1	0.3	1.2	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
DUF4244	PF14029.6	gi|564290242|ref|YP_008876533.1|	-	0.0099	15.3	0.1	0.12	11.8	0.0	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4244)
Oxidored_q6	PF01058.22	gi|564290243|ref|YP_008876534.1|	-	7.2e-22	77.6	0.2	1e-21	77.1	0.2	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_49kDa	PF00346.19	gi|564290244|ref|YP_008876535.1|	-	9.5e-84	280.7	0.0	1.9e-82	276.4	0.0	2.1	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|564290244|ref|YP_008876535.1|	-	4.6e-35	120.9	0.1	9e-35	120.0	0.1	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
NADHdh	PF00146.21	gi|564290245|ref|YP_008876536.1|	-	3e-97	325.6	12.6	3.7e-97	325.3	12.6	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Fer4	PF00037.27	gi|564290246|ref|YP_008876537.1|	-	4.6e-13	48.4	8.7	8.5e-07	28.5	2.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.7	gi|564290246|ref|YP_008876537.1|	-	2.8e-12	47.0	10.7	4.5e-12	46.4	10.7	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564290246|ref|YP_008876537.1|	-	1.6e-11	45.0	4.4	2.4e-06	28.4	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.6	gi|564290246|ref|YP_008876537.1|	-	2.4e-09	37.2	23.2	1.5e-07	31.5	12.1	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564290246|ref|YP_008876537.1|	-	6.5e-09	35.8	8.1	9.7e-09	35.2	8.1	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564290246|ref|YP_008876537.1|	-	4.8e-08	33.0	19.3	3.1e-06	27.2	11.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|564290246|ref|YP_008876537.1|	-	2.3e-06	27.4	12.6	0.0036	17.3	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.6	gi|564290246|ref|YP_008876537.1|	-	8e-06	26.2	9.7	0.0022	18.4	12.6	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|564290246|ref|YP_008876537.1|	-	1.6e-05	25.4	13.2	0.0043	17.5	2.1	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564290246|ref|YP_008876537.1|	-	3.6e-05	23.6	11.8	0.0044	17.0	1.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|564290246|ref|YP_008876537.1|	-	0.00018	22.2	14.1	0.0041	18.0	2.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564290246|ref|YP_008876537.1|	-	0.0002	21.6	14.1	0.0038	17.6	4.1	2.2	1	1	1	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|564290246|ref|YP_008876537.1|	-	0.001	19.3	9.2	0.051	13.8	1.4	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_22	PF17179.4	gi|564290246|ref|YP_008876537.1|	-	0.0027	18.5	5.7	0.52	11.2	0.7	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
ETF_QO	PF05187.13	gi|564290246|ref|YP_008876537.1|	-	0.049	13.8	8.3	0.16	12.1	8.3	1.7	1	1	0	1	1	1	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase,	4Fe-4S
TNFR_c6	PF00020.18	gi|564290246|ref|YP_008876537.1|	-	0.25	11.8	8.0	2.8	8.4	1.4	2.5	2	0	0	2	2	2	0	TNFR/NGFR	cysteine-rich	region
Fer4_13	PF13370.6	gi|564290246|ref|YP_008876537.1|	-	1.5	9.4	16.8	1.4	9.6	2.9	2.8	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Oxidored_q3	PF00499.20	gi|564290247|ref|YP_008876538.1|	-	1.9e-17	63.3	7.8	1.9e-17	63.3	7.8	1.4	2	0	0	2	2	2	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4040	PF13244.6	gi|564290247|ref|YP_008876538.1|	-	0.16	12.2	15.5	0.29	11.3	15.5	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4040)
Oxidored_q3	PF00499.20	gi|564290248|ref|YP_008876539.1|	-	0.00014	21.6	2.0	0.00017	21.3	2.0	1.1	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
G3P_acyltransf	PF02660.15	gi|564290248|ref|YP_008876539.1|	-	0.87	9.6	6.4	1.1	9.3	6.4	1.1	1	0	0	1	1	1	0	Glycerol-3-phosphate	acyltransferase
Oxidored_q2	PF00420.24	gi|564290249|ref|YP_008876540.1|	-	1.8e-22	79.0	8.6	1.9e-22	78.9	8.6	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2545	PF10810.8	gi|564290249|ref|YP_008876540.1|	-	0.29	11.3	6.0	0.72	10.0	6.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2545)
Proton_antipo_M	PF00361.20	gi|564290250|ref|YP_008876541.1|	-	2.3e-77	260.1	18.7	1.7e-76	257.3	18.7	2.3	1	1	0	1	1	1	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|564290250|ref|YP_008876541.1|	-	3.3e-20	71.9	1.1	7.8e-19	67.5	0.0	3.3	3	0	0	3	3	3	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Proton_antipo_C	PF01010.19	gi|564290250|ref|YP_008876541.1|	-	0.004	16.8	0.0	0.019	14.6	0.0	2.0	1	1	0	1	1	1	1	NADH-dehyrogenase	subunit	F,	TMs,	(complex	I)	C-terminus
Proton_antipo_M	PF00361.20	gi|564290251|ref|YP_008876542.1|	-	3.4e-74	249.7	29.7	3.4e-74	249.7	29.7	2.0	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Oxidored_q5_N	PF01059.17	gi|564290251|ref|YP_008876542.1|	-	0.00012	22.1	0.2	0.00012	22.1	0.2	3.5	4	0	0	4	4	4	1	NADH-ubiquinone	oxidoreductase	chain	4,	amino	terminus
Proton_antipo_M	PF00361.20	gi|564290252|ref|YP_008876543.1|	-	1.1e-64	218.4	23.1	1.1e-64	218.4	23.1	2.1	2	0	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|564290252|ref|YP_008876543.1|	-	0.00036	20.5	1.5	0.00036	20.5	1.5	2.4	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF4212	PF13937.6	gi|564290252|ref|YP_008876543.1|	-	0.74	10.2	13.7	1.3	9.5	0.2	4.4	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4212)
Lactamase_B	PF00753.27	gi|564290253|ref|YP_008876544.1|	-	1.9e-12	47.6	0.2	5e-12	46.2	0.2	1.7	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.7	gi|564290253|ref|YP_008876544.1|	-	2.9e-06	27.0	0.2	5.6e-06	26.0	0.2	1.7	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
TAD2	PF18521.1	gi|564290253|ref|YP_008876544.1|	-	0.099	12.6	0.0	0.42	10.7	0.0	2.1	1	0	0	1	1	1	0	Transactivation	domain	2
DUF883	PF05957.13	gi|564290254|ref|YP_008876545.1|	-	0.17	12.5	2.4	0.89	10.2	0.5	2.0	1	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
ATP-synt_B	PF00430.18	gi|564290254|ref|YP_008876545.1|	-	1.1	9.3	5.5	0.92	9.6	3.3	1.7	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
Pirin	PF02678.16	gi|564290255|ref|YP_008876546.1|	-	9.3e-22	77.1	0.0	1.7e-21	76.2	0.0	1.5	1	0	0	1	1	1	1	Pirin
Pirin_C	PF05726.13	gi|564290255|ref|YP_008876546.1|	-	2.2e-10	40.8	0.0	2.3e-09	37.5	0.0	2.2	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Pirin_C_2	PF17954.1	gi|564290255|ref|YP_008876546.1|	-	0.032	14.4	0.0	0.098	12.9	0.0	1.7	2	0	0	2	2	2	0	Quercetinase	C-terminal	cupin	domain
Pyr_redox_2	PF07992.14	gi|564290256|ref|YP_008876547.1|	-	7.5e-18	64.8	6.8	1.5e-10	40.8	0.3	2.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564290256|ref|YP_008876547.1|	-	3.5e-10	39.6	1.7	1.4e-05	24.5	0.0	2.9	1	1	2	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|564290256|ref|YP_008876547.1|	-	6.2e-10	38.3	0.1	0.00012	21.0	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
DAO	PF01266.24	gi|564290256|ref|YP_008876547.1|	-	6.6e-08	32.5	3.4	0.0036	16.9	0.0	2.7	1	1	2	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|564290256|ref|YP_008876547.1|	-	1.7e-07	31.4	0.4	0.00035	20.6	0.1	2.6	3	0	0	3	3	3	2	FAD-NAD(P)-binding
GIDA	PF01134.22	gi|564290256|ref|YP_008876547.1|	-	2.5e-06	26.9	0.2	0.00042	19.5	0.0	2.2	1	1	1	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.24	gi|564290256|ref|YP_008876547.1|	-	7.5e-06	25.3	1.0	0.00039	19.6	0.2	2.1	1	1	1	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564290256|ref|YP_008876547.1|	-	2.2e-05	23.9	5.7	0.033	13.4	0.1	2.1	1	1	1	2	2	2	2	FAD	binding	domain
Thi4	PF01946.17	gi|564290256|ref|YP_008876547.1|	-	2.7e-05	23.5	0.3	7.2e-05	22.1	0.0	1.8	2	1	0	2	2	2	1	Thi4	family
Lycopene_cycl	PF05834.12	gi|564290256|ref|YP_008876547.1|	-	0.0002	20.6	0.1	0.0057	15.8	0.0	2.1	1	1	1	2	2	2	1	Lycopene	cyclase	protein
FAD_oxidored	PF12831.7	gi|564290256|ref|YP_008876547.1|	-	0.00036	20.0	0.1	0.00036	20.0	0.1	1.5	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.6	gi|564290256|ref|YP_008876547.1|	-	0.00075	19.7	0.0	0.0015	18.7	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.21	gi|564290256|ref|YP_008876547.1|	-	0.0016	17.8	0.0	0.0022	17.3	0.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.14	gi|564290256|ref|YP_008876547.1|	-	0.0075	15.2	1.9	1.2	7.9	0.2	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
Pyr_redox	PF00070.27	gi|564290256|ref|YP_008876547.1|	-	0.035	14.7	0.0	1.5	9.4	0.0	2.6	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|564290256|ref|YP_008876547.1|	-	0.051	13.5	0.0	0.12	12.3	0.0	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
XdhC_C	PF13478.6	gi|564290256|ref|YP_008876547.1|	-	0.12	12.9	0.0	0.24	11.9	0.0	1.8	1	1	0	1	1	1	0	XdhC	Rossmann	domain
DoxX	PF07681.12	gi|564290257|ref|YP_008876548.1|	-	9.7e-11	42.1	10.2	9.7e-11	42.1	10.2	1.6	2	0	0	2	2	2	1	DoxX
SURF4	PF02077.15	gi|564290257|ref|YP_008876548.1|	-	0.00024	20.8	0.4	0.00074	19.2	0.4	1.8	1	1	0	1	1	1	1	SURF4	family
HR_lesion	PF05514.11	gi|564290257|ref|YP_008876548.1|	-	0.00026	21.2	0.2	0.021	15.0	0.1	2.1	1	1	1	2	2	2	2	HR-like	lesion-inducing
Histone_H2A_C	PF16211.5	gi|564290257|ref|YP_008876548.1|	-	0.013	15.3	0.0	0.013	15.3	0.0	2.1	3	0	0	3	3	3	0	C-terminus	of	histone	H2A
DoxX_2	PF13564.6	gi|564290257|ref|YP_008876548.1|	-	0.048	13.8	14.4	0.062	13.4	13.1	1.8	1	1	1	2	2	2	0	DoxX-like	family
DUF2613	PF11021.8	gi|564290257|ref|YP_008876548.1|	-	0.058	13.5	0.1	0.058	13.5	0.1	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2613)
TetR_N	PF00440.23	gi|564290258|ref|YP_008876549.1|	-	7.7e-10	38.4	0.0	1.4e-09	37.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.6	gi|564290258|ref|YP_008876549.1|	-	3.3e-09	37.0	0.2	5.8e-09	36.2	0.2	1.5	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_27	PF17935.1	gi|564290258|ref|YP_008876549.1|	-	2.4e-07	30.8	0.5	5.4e-07	29.6	0.2	1.8	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_11	PF16859.5	gi|564290258|ref|YP_008876549.1|	-	2.3e-05	24.7	0.4	4.8e-05	23.6	0.4	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|564290258|ref|YP_008876549.1|	-	3.3e-05	23.9	0.1	6.8e-05	22.9	0.0	1.5	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|564290258|ref|YP_008876549.1|	-	3.6e-05	24.0	0.1	9.7e-05	22.6	0.1	1.7	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|564290258|ref|YP_008876549.1|	-	0.037	14.1	0.0	0.064	13.3	0.0	1.3	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564290258|ref|YP_008876549.1|	-	0.038	14.1	0.0	0.074	13.1	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|564290258|ref|YP_008876549.1|	-	0.046	14.3	0.0	0.081	13.5	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
AAA_assoc_C	PF09821.9	gi|564290261|ref|YP_008876552.1|	-	0.086	13.4	0.0	0.16	12.5	0.0	1.4	1	0	0	1	1	1	0	C-terminal	AAA-associated	domain
MrpF_PhaF	PF04066.13	gi|564290262|ref|YP_008876553.1|	-	0.061	13.7	1.4	4.5	7.7	0.1	2.2	2	0	0	2	2	2	0	Multiple	resistance	and	pH	regulation	protein	F	(MrpF	/	PhaF)
SQS_PSY	PF00494.19	gi|564290263|ref|YP_008876554.1|	-	1.6e-50	172.0	0.2	2e-50	171.7	0.2	1.1	1	0	0	1	1	1	1	Squalene/phytoene	synthase
Glyco_hydro_68	PF02435.16	gi|564290265|ref|YP_008876556.1|	-	9.7e-75	252.0	0.0	2.8e-73	247.2	0.0	2.2	1	1	0	1	1	1	1	Levansucrase/Invertase
Glyco_hydro_43	PF04616.14	gi|564290265|ref|YP_008876556.1|	-	1.7e-08	34.1	0.0	5.4e-08	32.5	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	43
Glyco_hydro_32N	PF00251.20	gi|564290266|ref|YP_008876557.1|	-	4.9e-79	266.1	0.0	6.2e-79	265.7	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	32	N-terminal	domain
Glyco_hydro_32C	PF08244.12	gi|564290266|ref|YP_008876557.1|	-	1.1e-31	109.9	0.0	1.5e-31	109.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	32	C	terminal
DUF4960	PF16324.5	gi|564290266|ref|YP_008876557.1|	-	6.2e-07	29.2	0.0	4.6e-06	26.4	0.0	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4960)
Glyco_hydro_43	PF04616.14	gi|564290266|ref|YP_008876557.1|	-	0.039	13.3	0.2	1.7	7.9	0.0	2.5	2	1	0	2	2	2	0	Glycosyl	hydrolases	family	43
T2SSK	PF03934.13	gi|564290266|ref|YP_008876557.1|	-	0.079	12.3	0.0	0.13	11.7	0.0	1.2	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	K
DUF4975	PF16346.5	gi|564290266|ref|YP_008876557.1|	-	0.085	12.9	0.0	0.12	12.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4975)
DUF2647	PF10839.8	gi|564290266|ref|YP_008876557.1|	-	0.13	12.4	0.0	0.27	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2647)
TF_Zn_Ribbon	PF08271.12	gi|564291361|ref|YP_008876558.1|	-	2.4e-05	23.7	1.7	3.2e-05	23.3	1.7	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
DZR	PF12773.7	gi|564291361|ref|YP_008876558.1|	-	0.0015	18.5	0.9	0.002	18.1	0.9	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf_UBZ	PF18439.1	gi|564291361|ref|YP_008876558.1|	-	0.0026	17.3	0.8	0.21	11.2	0.1	2.1	2	0	0	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_2	PF13240.6	gi|564291361|ref|YP_008876558.1|	-	0.005	16.5	1.1	1.2	8.9	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Cytochrom_c3_2	PF14537.6	gi|564291361|ref|YP_008876558.1|	-	0.0054	17.2	1.5	0.0055	17.1	1.5	1.0	1	0	0	1	1	1	1	Cytochrome	c3
HypA	PF01155.19	gi|564291361|ref|YP_008876558.1|	-	0.007	16.4	0.8	0.007	16.4	0.8	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
OrfB_Zn_ribbon	PF07282.11	gi|564291361|ref|YP_008876558.1|	-	0.01	15.7	2.0	0.015	15.2	1.9	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Nudix_N_2	PF14803.6	gi|564291361|ref|YP_008876558.1|	-	0.013	15.4	1.8	0.11	12.4	1.8	2.0	1	1	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_10	PF10058.9	gi|564291361|ref|YP_008876558.1|	-	0.018	14.7	1.6	0.026	14.2	1.6	1.3	1	1	0	1	1	1	0	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
Zn-ribbon_8	PF09723.10	gi|564291361|ref|YP_008876558.1|	-	0.019	15.1	2.0	0.03	14.4	2.0	1.4	1	1	0	1	1	1	0	Zinc	ribbon	domain
Gin	PF10764.9	gi|564291361|ref|YP_008876558.1|	-	0.023	14.7	0.3	0.078	13.0	0.3	1.8	1	1	0	1	1	1	0	Inhibitor	of	sigma-G	Gin
zf-ribbon_3	PF13248.6	gi|564291361|ref|YP_008876558.1|	-	0.03	13.7	1.6	2.9	7.4	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DpnI	PF06044.12	gi|564291361|ref|YP_008876558.1|	-	0.039	13.6	0.4	0.039	13.6	0.4	1.1	1	0	0	1	1	1	0	Dam-replacing	family
DUF1451	PF07295.11	gi|564291361|ref|YP_008876558.1|	-	0.044	13.8	1.1	0.052	13.6	1.1	1.2	1	0	0	1	1	1	0	Zinc-ribbon	containing	domain
zf-C2HC5	PF06221.13	gi|564291361|ref|YP_008876558.1|	-	0.045	13.7	0.8	0.077	13.0	0.8	1.5	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
zinc-ribbons_6	PF07191.12	gi|564291361|ref|YP_008876558.1|	-	0.065	13.2	1.7	0.092	12.7	1.7	1.3	1	1	0	1	1	1	0	zinc-ribbons
Zn_Tnp_IS1595	PF12760.7	gi|564291361|ref|YP_008876558.1|	-	0.076	13.0	2.8	0.58	10.2	0.5	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Elf1	PF05129.13	gi|564291361|ref|YP_008876558.1|	-	0.16	12.0	2.9	0.65	10.1	0.2	2.0	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
CpXC	PF14353.6	gi|564291361|ref|YP_008876558.1|	-	0.37	10.8	2.7	1.8	8.6	0.2	2.0	1	1	1	2	2	2	0	CpXC	protein
zinc_ribbon_4	PF13717.6	gi|564291361|ref|YP_008876558.1|	-	0.78	9.7	4.6	13	5.8	1.1	2.3	2	1	0	2	2	2	0	zinc-ribbon	domain
Yop-YscD_ppl	PF16693.5	gi|564291362|ref|YP_008876559.1|	-	0.0043	16.5	0.0	0.0076	15.7	0.0	1.3	1	0	0	1	1	1	1	Inner	membrane	component	of	T3SS,	periplasmic	domain
DUF2564	PF10819.8	gi|564291362|ref|YP_008876559.1|	-	0.022	15.2	3.2	10	6.6	0.0	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2564)
Sugarporin_N	PF11471.8	gi|564291362|ref|YP_008876559.1|	-	0.11	12.5	0.6	0.46	10.5	0.6	2.0	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
TPR_2	PF07719.17	gi|564291362|ref|YP_008876559.1|	-	0.11	12.6	14.3	2.4	8.5	0.4	4.4	4	0	0	4	4	4	0	Tetratricopeptide	repeat
USP8_dimer	PF08969.11	gi|564291362|ref|YP_008876559.1|	-	0.14	12.4	0.1	2	8.6	0.0	2.4	2	0	0	2	2	2	0	USP8	dimerisation	domain
TPR_MLP1_2	PF07926.12	gi|564291362|ref|YP_008876559.1|	-	0.14	12.2	1.0	6.3	6.9	0.0	2.6	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
TPR_14	PF13428.6	gi|564291362|ref|YP_008876559.1|	-	5	8.2	20.4	9.2	7.4	0.9	5.2	3	1	2	5	5	5	0	Tetratricopeptide	repeat
TPR_1	PF00515.28	gi|564291362|ref|YP_008876559.1|	-	6.3	6.8	11.9	16	5.5	0.2	4.2	4	0	0	4	4	4	0	Tetratricopeptide	repeat
MreB_Mbl	PF06723.13	gi|564290268|ref|YP_008876561.1|	-	2.7e-06	26.4	0.1	5.8e-06	25.4	0.1	1.6	1	1	0	1	1	1	1	MreB/Mbl	protein
DNA_gyraseB	PF00204.25	gi|564290268|ref|YP_008876561.1|	-	0.0064	16.0	0.0	0.011	15.2	0.0	1.3	1	0	0	1	1	1	1	DNA	gyrase	B
Arch_fla_DE	PF04659.13	gi|564290269|ref|YP_008876562.1|	-	4e-30	103.5	0.3	5.6e-30	103.1	0.3	1.2	1	0	0	1	1	1	1	Archaeal	flagella	protein
AAA_31	PF13614.6	gi|564290270|ref|YP_008876563.1|	-	1.1e-37	129.6	0.0	8.7e-37	126.7	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564290270|ref|YP_008876563.1|	-	3.1e-18	66.0	0.0	4.1e-18	65.7	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|564290270|ref|YP_008876563.1|	-	1.2e-10	41.2	0.5	2.8e-06	26.8	0.1	2.4	2	1	0	2	2	2	2	ATPase	MipZ
ParA	PF10609.9	gi|564290270|ref|YP_008876563.1|	-	2.3e-09	37.1	0.7	6.1e-06	25.9	0.1	2.4	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|564290270|ref|YP_008876563.1|	-	8.5e-08	32.0	0.2	0.0066	16.0	0.1	2.3	2	1	0	2	2	2	2	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|564290270|ref|YP_008876563.1|	-	3.5e-07	29.9	0.0	0.0013	18.3	0.0	2.4	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
ArsA_ATPase	PF02374.15	gi|564290270|ref|YP_008876563.1|	-	1.7e-06	27.5	0.5	0.00051	19.3	0.0	2.1	2	0	0	2	2	2	2	Anion-transporting	ATPase
ATP_bind_1	PF03029.17	gi|564290270|ref|YP_008876563.1|	-	0.0024	17.7	0.5	0.85	9.3	0.0	2.4	3	0	0	3	3	3	2	Conserved	hypothetical	ATP	binding	protein
AAA_30	PF13604.6	gi|564290270|ref|YP_008876563.1|	-	0.032	13.9	0.0	0.058	13.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
CLP1_P	PF16575.5	gi|564290270|ref|YP_008876563.1|	-	0.058	13.2	0.0	0.15	11.8	0.0	1.6	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_25	PF13481.6	gi|564290270|ref|YP_008876563.1|	-	0.065	12.8	0.9	0.13	11.8	0.0	1.9	3	0	0	3	3	3	0	AAA	domain
LpxK	PF02606.14	gi|564290270|ref|YP_008876563.1|	-	0.11	11.5	0.1	0.19	10.8	0.1	1.3	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
VirC1	PF07015.11	gi|564290270|ref|YP_008876563.1|	-	0.11	11.7	3.7	2.4	7.4	3.9	2.5	1	1	0	1	1	1	0	VirC1	protein
AAA_24	PF13479.6	gi|564290270|ref|YP_008876563.1|	-	0.16	11.7	0.2	0.4	10.4	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
DUF4535	PF15054.6	gi|564290270|ref|YP_008876563.1|	-	0.22	11.3	0.0	0.4	10.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4535)
CheW	PF01584.19	gi|564290271|ref|YP_008876564.1|	-	2e-21	76.1	0.5	3e-21	75.5	0.5	1.3	1	0	0	1	1	1	1	CheW-like	domain
Pyr_redox_2	PF07992.14	gi|564290272|ref|YP_008876565.1|	-	3.1e-29	102.1	2.3	3.1e-29	102.1	2.3	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564290272|ref|YP_008876565.1|	-	3.9e-12	46.6	5.7	1.6e-08	35.0	0.1	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|564290272|ref|YP_008876565.1|	-	1.5e-05	24.8	3.1	0.24	10.9	0.0	3.5	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|564290272|ref|YP_008876565.1|	-	9.8e-05	22.4	2.0	0.97	9.4	0.0	3.6	2	2	2	4	4	4	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|564290272|ref|YP_008876565.1|	-	0.0016	18.6	5.1	0.27	11.5	0.0	3.3	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
TrkA_N	PF02254.18	gi|564290272|ref|YP_008876565.1|	-	0.0029	17.9	0.3	0.3	11.3	0.0	2.4	2	0	0	2	2	2	1	TrkA-N	domain
K_oxygenase	PF13434.6	gi|564290272|ref|YP_008876565.1|	-	0.0071	15.5	0.0	0.069	12.3	0.0	2.0	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Thi4	PF01946.17	gi|564290272|ref|YP_008876565.1|	-	0.0072	15.6	0.2	3.1	7.0	0.0	2.4	2	0	0	2	2	2	2	Thi4	family
UDPG_MGDP_dh_N	PF03721.14	gi|564290272|ref|YP_008876565.1|	-	0.023	14.3	0.2	0.35	10.4	0.0	2.4	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Lycopene_cycl	PF05834.12	gi|564290272|ref|YP_008876565.1|	-	0.1	11.6	6.5	0.46	9.5	0.0	3.1	3	1	1	4	4	4	0	Lycopene	cyclase	protein
MDD_C	PF18376.1	gi|564290273|ref|YP_008876566.1|	-	1.9e-05	24.5	0.0	2.8e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Mevalonate	5-diphosphate	decarboxylase	C-terminal	domain
GHMP_kinases_N	PF00288.26	gi|564290273|ref|YP_008876566.1|	-	8.8e-05	22.7	4.0	0.00096	19.3	4.2	2.3	1	1	1	2	2	2	1	GHMP	kinases	N	terminal	domain
Methyltransf_24	PF13578.6	gi|564290273|ref|YP_008876566.1|	-	0.42	11.7	2.5	33	5.6	0.0	2.8	2	1	0	2	2	2	0	Methyltransferase	domain
Cob_adeno_trans	PF01923.18	gi|564290274|ref|YP_008876567.1|	-	9.9e-56	188.4	0.0	1.1e-55	188.2	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
PMSR	PF01625.21	gi|564290275|ref|YP_008876568.1|	-	1.5e-38	132.4	0.0	2.1e-38	131.9	0.0	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
zf-H2C2_2	PF13465.6	gi|564290276|ref|YP_008876569.1|	-	0.00073	19.9	4.8	0.0044	17.4	0.2	2.1	2	0	0	2	2	2	1	Zinc-finger	double	domain
DNA_ligase_ZBD	PF03119.16	gi|564290276|ref|YP_008876569.1|	-	0.0093	16.0	3.5	0.069	13.2	0.1	2.2	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-LITAF-like	PF10601.9	gi|564290276|ref|YP_008876569.1|	-	0.012	15.8	0.8	0.5	10.7	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_9	PF14369.6	gi|564290276|ref|YP_008876569.1|	-	0.019	15.2	4.2	0.07	13.4	0.1	2.2	1	1	1	2	2	2	0	zinc-ribbon
Rubredoxin_2	PF18073.1	gi|564290276|ref|YP_008876569.1|	-	0.038	13.7	3.2	0.6	9.9	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
Zn_ribbon_SprT	PF17283.2	gi|564290276|ref|YP_008876569.1|	-	0.2	11.6	4.0	1	9.3	0.1	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564290276|ref|YP_008876569.1|	-	0.2	11.6	2.6	3.6	7.6	0.2	2.0	1	1	0	1	1	1	0	zinc-ribbons
zf_C2H2_10	PF18414.1	gi|564290276|ref|YP_008876569.1|	-	0.28	10.8	3.8	8.4	6.0	0.8	2.3	2	0	0	2	2	2	0	C2H2	type	zinc-finger
UPF0547	PF10571.9	gi|564290276|ref|YP_008876569.1|	-	0.29	11.3	6.5	3.6	7.7	0.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Rubredoxin	PF00301.20	gi|564290276|ref|YP_008876569.1|	-	1.2	9.2	7.8	1.1	9.4	1.6	2.2	1	1	1	2	2	2	0	Rubredoxin
Response_reg	PF00072.24	gi|564290278|ref|YP_008876571.1|	-	7.2e-19	68.0	0.2	8.5e-19	67.8	0.2	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|564291363|ref|YP_008876572.1|	-	4.9e-30	103.9	0.0	2.7e-10	40.4	0.1	3.7	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|564291363|ref|YP_008876572.1|	-	7.3e-24	84.0	0.2	3.1e-09	36.8	0.0	4.1	4	0	0	4	4	4	3	PAS	fold
PAS_4	PF08448.10	gi|564291363|ref|YP_008876572.1|	-	5.2e-23	81.4	9.4	7.7e-07	29.3	0.1	4.4	4	0	0	4	4	4	3	PAS	fold
PAS_8	PF13188.7	gi|564291363|ref|YP_008876572.1|	-	5.1e-20	71.1	1.7	7.3e-07	29.1	0.1	3.9	3	0	0	3	3	3	3	PAS	domain
GAF_2	PF13185.6	gi|564291363|ref|YP_008876572.1|	-	8.5e-20	71.5	0.4	4e-10	40.1	0.2	2.9	2	0	0	2	2	2	2	GAF	domain
HATPase_c	PF02518.26	gi|564291363|ref|YP_008876572.1|	-	2.9e-17	63.2	0.0	6.2e-17	62.1	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|564291363|ref|YP_008876572.1|	-	7.3e-13	49.0	0.0	3.1e-05	24.3	0.0	2.7	2	0	0	2	2	2	2	GAF	domain
GAF	PF01590.26	gi|564291363|ref|YP_008876572.1|	-	7.6e-10	39.5	0.1	1.6e-05	25.6	0.0	3.2	3	0	0	3	3	3	2	GAF	domain
PAS_3	PF08447.12	gi|564291363|ref|YP_008876572.1|	-	7e-09	35.9	0.0	0.0017	18.6	0.0	3.3	3	0	0	3	3	3	2	PAS	fold
Response_reg	PF00072.24	gi|564291363|ref|YP_008876572.1|	-	1.5e-07	31.6	0.0	4.1e-07	30.1	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HisKA	PF00512.25	gi|564291363|ref|YP_008876572.1|	-	2.8e-06	27.3	3.8	2.8e-06	27.3	3.8	3.1	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_2	PF13581.6	gi|564291363|ref|YP_008876572.1|	-	1.2e-05	25.3	0.1	3.3e-05	23.9	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_5	PF14501.6	gi|564291363|ref|YP_008876572.1|	-	0.0075	16.2	0.0	0.019	14.8	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
HATPase_c_3	PF13589.6	gi|564291363|ref|YP_008876572.1|	-	0.011	15.6	0.0	0.02	14.7	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA_4TM	PF16926.5	gi|564291363|ref|YP_008876572.1|	-	0.054	13.1	0.1	0.099	12.2	0.1	1.4	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
PAS_7	PF12860.7	gi|564291363|ref|YP_008876572.1|	-	0.085	13.0	1.6	12	6.1	0.0	4.2	4	1	0	4	4	3	0	PAS	fold
DUF3369	PF11849.8	gi|564291363|ref|YP_008876572.1|	-	0.11	12.7	0.0	0.33	11.2	0.0	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3369)
Aminotran_5	PF00266.19	gi|564290279|ref|YP_008876573.1|	-	1.6e-08	33.9	0.0	2.3e-08	33.4	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
GDC-P	PF02347.16	gi|564290279|ref|YP_008876573.1|	-	1.9e-05	23.7	0.0	0.0017	17.3	0.1	2.1	2	0	0	2	2	2	2	Glycine	cleavage	system	P-protein
Beta_elim_lyase	PF01212.21	gi|564290279|ref|YP_008876573.1|	-	0.0038	16.5	0.1	0.0061	15.9	0.1	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Peptidase_S8	PF00082.22	gi|564290279|ref|YP_008876573.1|	-	0.057	12.7	0.0	0.079	12.2	0.0	1.2	1	0	0	1	1	1	0	Subtilase	family
DegT_DnrJ_EryC1	PF01041.17	gi|564290279|ref|YP_008876573.1|	-	0.17	11.2	0.1	0.28	10.4	0.1	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
GDC-P	PF02347.16	gi|564290280|ref|YP_008876574.1|	-	3.6e-102	342.4	0.0	4.2e-102	342.2	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
Cys_Met_Meta_PP	PF01053.20	gi|564290280|ref|YP_008876574.1|	-	1.1e-05	24.2	0.0	1.6e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
GCV_H	PF01597.19	gi|564290281|ref|YP_008876575.1|	-	1.8e-42	144.1	0.0	1.9e-42	144.0	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
RnfC_N	PF13375.6	gi|564290281|ref|YP_008876575.1|	-	0.0084	16.0	0.0	0.01	15.8	0.0	1.3	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
Biotin_lipoyl	PF00364.22	gi|564290281|ref|YP_008876575.1|	-	0.016	15.0	0.2	0.032	14.1	0.1	1.5	2	0	0	2	2	2	0	Biotin-requiring	enzyme
PTS_EIIA_1	PF00358.20	gi|564290281|ref|YP_008876575.1|	-	0.13	12.0	0.3	0.42	10.4	0.3	1.8	1	1	0	1	1	1	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
GCV_T	PF01571.21	gi|564290282|ref|YP_008876576.1|	-	3.7e-81	272.3	0.0	4.5e-81	272.0	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|564290282|ref|YP_008876576.1|	-	1.6e-21	76.0	0.0	3.5e-21	74.9	0.0	1.6	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
SoxG	PF04268.12	gi|564290282|ref|YP_008876576.1|	-	0.0003	20.9	0.0	0.0085	16.3	0.0	2.1	2	0	0	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
TrmE_N	PF10396.9	gi|564290282|ref|YP_008876576.1|	-	0.11	12.8	0.0	0.35	11.2	0.0	1.8	2	0	0	2	2	2	0	GTP-binding	protein	TrmE	N-terminus
PAS_4	PF08448.10	gi|564290283|ref|YP_008876577.1|	-	9.5e-26	90.2	7.8	6.3e-12	45.7	0.0	3.6	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|564290283|ref|YP_008876577.1|	-	4.8e-20	71.7	0.0	6e-10	39.1	0.0	4.0	4	1	0	4	4	4	3	PAS	fold
PAS_3	PF08447.12	gi|564290283|ref|YP_008876577.1|	-	4.9e-18	65.2	0.0	4.6e-07	30.0	0.0	3.3	3	0	0	3	3	3	3	PAS	fold
PAS_9	PF13426.7	gi|564290283|ref|YP_008876577.1|	-	2.8e-16	59.6	0.0	3.4e-09	36.9	0.0	3.5	3	0	0	3	3	3	3	PAS	domain
HATPase_c	PF02518.26	gi|564290283|ref|YP_008876577.1|	-	1.1e-09	38.7	0.0	2.2e-09	37.8	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_8	PF13188.7	gi|564290283|ref|YP_008876577.1|	-	1.8e-07	31.0	0.0	7.5e-07	29.0	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
HisKA	PF00512.25	gi|564290283|ref|YP_008876577.1|	-	0.00083	19.3	0.3	0.0039	17.2	0.3	2.2	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|564290283|ref|YP_008876577.1|	-	0.076	12.6	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Archaeal	4TM	region	of	histidine	kinase
SPOB_a	PF14689.6	gi|564290283|ref|YP_008876577.1|	-	0.08	12.7	0.2	0.21	11.3	0.2	1.7	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
NYN	PF01936.18	gi|564290284|ref|YP_008876578.1|	-	5.2e-19	69.2	0.1	5.9e-19	69.0	0.1	1.0	1	0	0	1	1	1	1	NYN	domain
Peripla_BP_4	PF13407.6	gi|564290284|ref|YP_008876578.1|	-	0.0011	18.6	0.6	0.0014	18.3	0.6	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
CoA_binding_2	PF13380.6	gi|564290284|ref|YP_008876578.1|	-	0.01	16.4	0.4	0.022	15.3	0.3	1.6	1	1	1	2	2	2	1	CoA	binding	domain
Peripla_BP_1	PF00532.21	gi|564290284|ref|YP_008876578.1|	-	0.1	12.0	0.0	0.13	11.7	0.0	1.1	1	0	0	1	1	1	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
TatD_DNase	PF01026.21	gi|564290285|ref|YP_008876579.1|	-	2e-15	56.8	0.1	1.1e-11	44.7	0.0	2.1	1	1	1	2	2	2	2	TatD	related	DNase
ABC_tran	PF00005.27	gi|564290286|ref|YP_008876580.1|	-	1.2e-29	103.6	0.0	2e-29	102.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290286|ref|YP_008876580.1|	-	1.2e-11	45.0	0.0	8.6e-05	22.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564290286|ref|YP_008876580.1|	-	1e-08	34.9	0.5	1.3e-07	31.3	0.5	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564290286|ref|YP_008876580.1|	-	5.5e-05	23.0	0.0	0.0083	15.9	0.0	2.2	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564290286|ref|YP_008876580.1|	-	0.00027	21.5	0.4	0.0013	19.3	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290286|ref|YP_008876580.1|	-	0.0014	18.5	0.0	0.0033	17.3	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|564290286|ref|YP_008876580.1|	-	0.0018	18.6	0.0	0.0056	17.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|564290286|ref|YP_008876580.1|	-	0.0042	16.8	0.0	0.0097	15.6	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|564290286|ref|YP_008876580.1|	-	0.0064	16.6	0.0	0.0095	16.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|564290286|ref|YP_008876580.1|	-	0.0092	15.6	0.5	0.1	12.1	0.5	2.3	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564290286|ref|YP_008876580.1|	-	0.013	15.5	0.0	0.024	14.6	0.0	1.4	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_16	PF13191.6	gi|564290286|ref|YP_008876580.1|	-	0.021	15.2	0.1	0.069	13.5	0.1	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564290286|ref|YP_008876580.1|	-	0.022	14.5	0.5	0.49	10.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DeoRC	PF00455.22	gi|564290286|ref|YP_008876580.1|	-	0.026	14.5	0.0	0.043	13.7	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
ABC_ATPase	PF09818.9	gi|564290286|ref|YP_008876580.1|	-	0.031	13.1	0.2	4.5	6.0	0.0	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
KdpD	PF02702.17	gi|564290286|ref|YP_008876580.1|	-	0.058	12.8	0.2	0.1	12.0	0.2	1.4	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
PRK	PF00485.18	gi|564290286|ref|YP_008876580.1|	-	0.062	13.0	0.0	0.23	11.2	0.0	1.9	1	1	1	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Mg_chelatase	PF01078.21	gi|564290286|ref|YP_008876580.1|	-	0.07	12.5	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.6	gi|564290286|ref|YP_008876580.1|	-	0.15	11.8	0.1	0.88	9.3	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.22	gi|564290287|ref|YP_008876581.1|	-	2.6e-21	76.2	13.2	2.6e-21	76.2	13.2	5.1	1	1	3	4	4	4	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564290288|ref|YP_008876582.1|	-	6e-16	58.7	17.6	6e-16	58.7	17.6	2.2	1	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.7	gi|564290289|ref|YP_008876583.1|	-	6.5e-29	101.5	0.1	1.2e-28	100.6	0.1	1.4	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|564290289|ref|YP_008876583.1|	-	4.1e-19	68.4	0.0	5.9e-19	67.9	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.25	gi|564290289|ref|YP_008876583.1|	-	0.00022	21.3	0.4	0.22	11.4	0.0	2.3	2	1	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564290289|ref|YP_008876583.1|	-	0.00073	19.3	1.6	0.0012	18.6	1.6	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
RecT	PF03837.14	gi|564290289|ref|YP_008876583.1|	-	0.032	13.7	1.4	1.3	8.4	0.3	2.2	2	0	0	2	2	2	0	RecT	family
PhoU	PF01895.19	gi|564290290|ref|YP_008876584.1|	-	1e-23	83.6	5.9	4.3e-19	68.8	0.6	2.5	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|564290290|ref|YP_008876584.1|	-	6e-09	35.6	0.0	1.2e-08	34.6	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF948	PF06103.11	gi|564290290|ref|YP_008876584.1|	-	2.3e-05	24.5	3.5	1.1	9.5	0.1	3.5	2	2	1	3	3	3	3	Bacterial	protein	of	unknown	function	(DUF948)
Bep_C_terminal	PF17841.1	gi|564290290|ref|YP_008876584.1|	-	0.0094	16.1	0.0	0.023	14.9	0.0	1.8	1	1	0	1	1	1	1	BID	domain	of	Bartonella	effector	protein	(Bep)
FAM184	PF15665.5	gi|564290290|ref|YP_008876584.1|	-	0.094	12.5	0.2	0.17	11.6	0.2	1.4	1	0	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
FlgN	PF05130.12	gi|564290290|ref|YP_008876584.1|	-	0.12	12.9	0.4	0.12	12.9	0.4	1.8	2	1	0	2	2	2	0	FlgN	protein
T3SSipB	PF16535.5	gi|564290290|ref|YP_008876584.1|	-	0.38	11.2	4.3	5.8	7.4	2.8	2.9	2	1	0	2	2	2	0	Type	III	cell	invasion	protein	SipB
HisKA_3	PF07730.13	gi|564290290|ref|YP_008876584.1|	-	3	8.4	7.7	21	5.7	0.1	3.5	2	2	2	4	4	4	0	Histidine	kinase
Ribosomal_S8e	PF01201.22	gi|564290291|ref|YP_008876585.1|	-	1.1e-29	103.4	5.5	1.2e-29	103.2	5.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8e
PUB	PF09409.10	gi|564290291|ref|YP_008876585.1|	-	0.12	12.4	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	PUB	domain
DUF2240	PF09999.9	gi|564290292|ref|YP_008876586.1|	-	1.2e-54	183.9	0.7	1.3e-54	183.7	0.7	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
DUF373	PF04123.13	gi|564290294|ref|YP_008876588.1|	-	0.49	9.8	8.3	4.5	6.6	8.3	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
PrgI	PF12666.7	gi|564290294|ref|YP_008876588.1|	-	5.6	7.7	11.0	1.4	9.7	1.2	2.4	2	0	0	2	2	2	0	PrgI	family	protein
OMPdecase	PF00215.24	gi|564290295|ref|YP_008876589.1|	-	9.3e-32	110.4	0.0	1.2e-31	110.1	0.0	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
MutL	PF13941.6	gi|564290295|ref|YP_008876589.1|	-	0.11	11.0	0.1	0.16	10.5	0.1	1.1	1	0	0	1	1	1	0	MutL	protein
zf-C2HC5	PF06221.13	gi|564290296|ref|YP_008876590.1|	-	0.014	15.3	0.4	0.014	15.3	0.4	1.7	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-HIT	PF04438.16	gi|564290296|ref|YP_008876590.1|	-	0.019	14.8	5.0	0.026	14.4	1.4	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
DZR	PF12773.7	gi|564290296|ref|YP_008876590.1|	-	0.02	14.9	6.2	0.083	12.9	6.2	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-B_box	PF00643.24	gi|564290296|ref|YP_008876590.1|	-	0.15	12.3	5.1	0.26	11.5	1.9	2.0	2	0	0	2	2	2	0	B-box	zinc	finger
zf-HYPF	PF07503.12	gi|564290296|ref|YP_008876590.1|	-	0.3	10.9	0.0	0.3	10.9	0.0	2.9	2	1	1	3	3	3	0	HypF	finger
Prok-RING_2	PF14445.6	gi|564290296|ref|YP_008876590.1|	-	0.5	10.6	8.1	0.9	9.7	8.1	1.5	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	2
zf-LITAF-like	PF10601.9	gi|564290296|ref|YP_008876590.1|	-	0.51	10.6	5.9	1.4	9.2	3.5	2.2	2	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564290296|ref|YP_008876590.1|	-	0.69	9.7	5.5	4.1	7.2	0.1	2.6	2	1	0	2	2	2	0	zinc-ribbon	domain
zf-AN1	PF01428.16	gi|564290296|ref|YP_008876590.1|	-	1.4	9.1	8.6	6.8	6.9	9.0	2.0	1	1	1	2	2	2	0	AN1-like	Zinc	finger
Fzo_mitofusin	PF04799.13	gi|564290297|ref|YP_008876591.1|	-	0.74	9.4	4.9	0.77	9.3	4.9	1.1	1	0	0	1	1	1	0	fzo-like	conserved	region
GATase	PF00117.28	gi|564290298|ref|YP_008876592.1|	-	5.8e-43	146.9	0.0	6.6e-43	146.7	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|564290298|ref|YP_008876592.1|	-	3.2e-08	33.6	0.2	1.5e-07	31.4	0.2	1.8	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.18	gi|564290299|ref|YP_008876593.1|	-	1.9e-92	309.5	0.0	5.1e-92	308.1	0.0	1.6	2	0	0	2	2	2	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|564290299|ref|YP_008876593.1|	-	3.2e-18	66.3	0.0	1.9e-16	60.5	0.0	3.1	2	1	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
PRAI	PF00697.22	gi|564290300|ref|YP_008876594.1|	-	2e-34	119.1	0.4	2.3e-34	118.9	0.4	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
TMP-TENI	PF02581.17	gi|564290300|ref|YP_008876594.1|	-	0.0012	18.2	1.0	0.0084	15.5	0.0	2.4	2	1	1	3	3	3	1	Thiamine	monophosphate	synthase
NMO	PF03060.15	gi|564290300|ref|YP_008876594.1|	-	0.015	14.7	5.7	0.018	14.5	0.9	2.1	1	1	0	2	2	2	0	Nitronate	monooxygenase
His_biosynth	PF00977.21	gi|564290300|ref|YP_008876594.1|	-	0.016	14.7	1.5	0.022	14.2	0.3	2.0	2	1	0	2	2	2	0	Histidine	biosynthesis	protein
BtpA	PF03437.15	gi|564290300|ref|YP_008876594.1|	-	0.037	13.4	0.3	0.067	12.6	0.1	1.6	1	1	0	1	1	1	0	BtpA	family
DUF1386	PF07138.11	gi|564290300|ref|YP_008876594.1|	-	0.13	11.5	0.0	0.22	10.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1386)
Trimer_CC	PF08954.11	gi|564290300|ref|YP_008876594.1|	-	0.14	11.7	0.1	0.35	10.5	0.1	1.7	1	0	0	1	1	1	0	Trimerisation	motif
UPF0180	PF03698.13	gi|564290300|ref|YP_008876594.1|	-	0.16	12.1	0.5	0.58	10.4	0.0	2.1	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0180)
Turandot	PF07240.11	gi|564290300|ref|YP_008876594.1|	-	0.26	11.3	1.3	32	4.6	0.1	3.3	3	1	0	3	3	3	0	Stress-inducible	humoral	factor	Turandot
Glycos_transf_3	PF00591.21	gi|564290301|ref|YP_008876595.1|	-	2e-100	335.6	2.5	2.6e-100	335.2	2.5	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.17	gi|564290301|ref|YP_008876595.1|	-	5.1e-18	64.7	3.0	5.1e-18	64.7	3.0	2.1	3	0	0	3	3	3	1	Glycosyl	transferase	family,	helical	bundle	domain
DUF2717	PF10911.8	gi|564290301|ref|YP_008876595.1|	-	0.012	15.3	0.0	0.04	13.6	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2717)
PadR	PF03551.14	gi|564290302|ref|YP_008876596.1|	-	0.0018	18.2	0.1	0.007	16.3	0.1	1.9	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.19	gi|564290302|ref|YP_008876596.1|	-	0.13	12.2	0.0	0.23	11.4	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
CBS	PF00571.28	gi|564290305|ref|YP_008876599.1|	-	7e-41	138.5	15.6	4.4e-14	52.7	2.9	4.3	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.19	gi|564290305|ref|YP_008876599.1|	-	0.0034	18.1	0.0	0.016	16.0	0.0	2.2	1	1	0	1	1	1	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
POTRA	PF07244.15	gi|564290305|ref|YP_008876599.1|	-	0.071	13.7	0.0	0.44	11.2	0.0	2.3	2	1	0	2	2	2	0	Surface	antigen	variable	number	repeat
RNR_N	PF08343.10	gi|564290305|ref|YP_008876599.1|	-	0.091	12.8	0.1	0.72	9.9	0.1	2.3	2	0	0	2	2	2	0	Ribonucleotide	reductase	N-terminal
DUF3010	PF11215.8	gi|564290305|ref|YP_008876599.1|	-	0.14	12.4	0.2	1	9.6	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3010)
ADH_N_2	PF16884.5	gi|564290306|ref|YP_008876600.1|	-	2.9e-39	133.3	0.0	6.3e-39	132.2	0.0	1.6	1	0	0	1	1	1	1	N-terminal	domain	of	oxidoreductase
ADH_zinc_N	PF00107.26	gi|564290306|ref|YP_008876600.1|	-	3.7e-19	69.0	0.0	5.2e-19	68.5	0.0	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|564290306|ref|YP_008876600.1|	-	1.6e-10	42.1	0.0	2.9e-10	41.3	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AAA	PF00004.29	gi|564290307|ref|YP_008876601.1|	-	4.9e-100	331.1	0.0	1.8e-49	167.6	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.18	gi|564290307|ref|YP_008876601.1|	-	6.7e-31	106.3	0.0	4.3e-30	103.7	0.1	2.3	3	0	0	3	3	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
AAA_lid_3	PF17862.1	gi|564290307|ref|YP_008876601.1|	-	2.7e-27	94.3	5.1	6.1e-13	48.3	1.2	2.5	2	0	0	2	2	2	2	AAA+	lid	domain
CDC48_2	PF02933.17	gi|564290307|ref|YP_008876601.1|	-	3.6e-17	61.9	0.1	2.5e-16	59.2	0.1	2.3	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	domain	2
RuvB_N	PF05496.12	gi|564290307|ref|YP_008876601.1|	-	3.6e-15	56.1	0.0	7.3e-07	29.1	0.0	2.7	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|564290307|ref|YP_008876601.1|	-	2.1e-13	51.0	3.5	8.3e-06	26.3	0.2	4.3	3	2	1	4	4	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|564290307|ref|YP_008876601.1|	-	5.3e-13	49.4	0.0	1.5e-05	25.2	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.14	gi|564290307|ref|YP_008876601.1|	-	5.8e-13	49.0	2.0	5.9e-05	23.1	0.0	4.0	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.6	gi|564290307|ref|YP_008876601.1|	-	1.9e-11	44.4	0.6	0.0094	16.2	0.0	4.3	2	2	1	4	4	4	2	AAA	domain
AAA_33	PF13671.6	gi|564290307|ref|YP_008876601.1|	-	7.7e-11	42.3	0.0	6.5e-05	23.1	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.13	gi|564290307|ref|YP_008876601.1|	-	1.2e-10	41.1	0.0	0.00037	19.8	0.0	3.2	3	0	0	3	3	3	2	TIP49	P-loop	domain
IstB_IS21	PF01695.17	gi|564290307|ref|YP_008876601.1|	-	2.1e-07	30.9	0.0	0.017	14.9	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_14	PF13173.6	gi|564290307|ref|YP_008876601.1|	-	2.9e-07	30.6	0.0	0.0058	16.7	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|564290307|ref|YP_008876601.1|	-	7.6e-07	29.7	0.0	0.076	13.6	0.0	3.0	3	0	0	3	3	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|564290307|ref|YP_008876601.1|	-	1.2e-06	28.1	0.1	0.054	12.9	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_25	PF13481.6	gi|564290307|ref|YP_008876601.1|	-	1.3e-06	28.2	0.4	1.5	8.4	0.0	4.4	4	0	0	4	4	4	1	AAA	domain
RNA_helicase	PF00910.22	gi|564290307|ref|YP_008876601.1|	-	1.4e-06	28.6	0.0	0.059	13.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
Sigma54_activat	PF00158.26	gi|564290307|ref|YP_008876601.1|	-	2.2e-06	27.5	0.1	0.11	12.1	0.0	3.4	3	1	0	3	3	3	2	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|564290307|ref|YP_008876601.1|	-	3.2e-06	26.8	0.0	0.077	12.5	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_3	PF07726.11	gi|564290307|ref|YP_008876601.1|	-	8e-06	25.7	0.0	0.1	12.4	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.6	gi|564290307|ref|YP_008876601.1|	-	8.2e-06	26.2	0.0	0.038	14.3	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
ATPase_2	PF01637.18	gi|564290307|ref|YP_008876601.1|	-	1.5e-05	25.0	0.0	0.92	9.4	0.0	3.9	2	2	1	3	3	3	1	ATPase	domain	predominantly	from	Archaea
TsaE	PF02367.17	gi|564290307|ref|YP_008876601.1|	-	2.2e-05	24.4	0.0	0.17	11.9	0.0	2.4	2	0	0	2	2	2	2	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
PhoH	PF02562.16	gi|564290307|ref|YP_008876601.1|	-	2.3e-05	23.9	0.5	0.43	10.0	0.0	3.4	3	0	0	3	3	3	2	PhoH-like	protein
ATPase	PF06745.13	gi|564290307|ref|YP_008876601.1|	-	3.6e-05	23.2	2.8	0.48	9.7	0.0	3.7	4	0	0	4	4	4	2	KaiC
ABC_tran	PF00005.27	gi|564290307|ref|YP_008876601.1|	-	4.9e-05	23.8	0.0	0.49	10.9	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_24	PF13479.6	gi|564290307|ref|YP_008876601.1|	-	5.4e-05	23.0	0.0	0.23	11.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_30	PF13604.6	gi|564290307|ref|YP_008876601.1|	-	6.8e-05	22.7	0.1	0.51	10.0	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
AAA_11	PF13086.6	gi|564290307|ref|YP_008876601.1|	-	7.3e-05	22.7	0.2	0.3	10.8	0.0	2.7	3	0	0	3	3	3	2	AAA	domain
DUF815	PF05673.13	gi|564290307|ref|YP_008876601.1|	-	8.5e-05	21.8	0.0	0.24	10.5	0.0	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.22	gi|564290307|ref|YP_008876601.1|	-	9.5e-05	21.7	0.0	0.12	11.6	0.0	2.6	2	0	0	2	2	2	2	NB-ARC	domain
Parvo_NS1	PF01057.17	gi|564290307|ref|YP_008876601.1|	-	0.00031	19.9	0.1	0.37	9.8	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
DUF2075	PF09848.9	gi|564290307|ref|YP_008876601.1|	-	0.00034	20.0	0.0	0.35	10.1	0.0	2.3	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|564290307|ref|YP_008876601.1|	-	0.00045	20.2	0.1	0.57	10.1	0.0	3.1	3	0	0	3	3	2	1	NACHT	domain
AAA_17	PF13207.6	gi|564290307|ref|YP_008876601.1|	-	0.0007	20.0	0.0	1.5	9.2	0.0	3.4	3	0	0	3	3	2	1	AAA	domain
Zeta_toxin	PF06414.12	gi|564290307|ref|YP_008876601.1|	-	0.00098	18.4	0.2	1.8	7.8	0.0	2.6	2	0	0	2	2	2	2	Zeta	toxin
AAA_19	PF13245.6	gi|564290307|ref|YP_008876601.1|	-	0.0016	18.8	0.7	2.3	8.6	0.0	2.8	2	1	1	3	3	2	1	AAA	domain
Vps4_C	PF09336.10	gi|564290307|ref|YP_008876601.1|	-	0.0016	18.4	1.3	0.19	11.7	0.0	3.0	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
Sigma54_activ_2	PF14532.6	gi|564290307|ref|YP_008876601.1|	-	0.0017	18.5	0.0	3.1	7.9	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
IPT	PF01745.16	gi|564290307|ref|YP_008876601.1|	-	0.0021	17.5	0.8	0.68	9.3	0.0	2.8	3	0	0	3	3	3	1	Isopentenyl	transferase
NTPase_1	PF03266.15	gi|564290307|ref|YP_008876601.1|	-	0.0024	17.8	0.1	2.9	7.8	0.1	3.1	2	1	0	2	2	2	1	NTPase
Bac_DnaA	PF00308.18	gi|564290307|ref|YP_008876601.1|	-	0.0056	16.5	0.1	5.3	6.8	0.0	2.9	3	0	0	3	3	2	0	Bacterial	dnaA	protein
Cytidylate_kin	PF02224.18	gi|564290307|ref|YP_008876601.1|	-	0.013	15.3	0.1	4.4	7.0	0.0	2.5	2	0	0	2	2	2	0	Cytidylate	kinase
Viral_helicase1	PF01443.18	gi|564290307|ref|YP_008876601.1|	-	0.018	14.8	0.0	1.5	8.5	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
KAP_NTPase	PF07693.14	gi|564290307|ref|YP_008876601.1|	-	0.019	14.2	0.1	4.7	6.3	0.0	3.0	2	2	0	3	3	3	0	KAP	family	P-loop	domain
AFG1_ATPase	PF03969.16	gi|564290307|ref|YP_008876601.1|	-	0.021	13.7	0.0	1.8	7.4	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
CPT	PF07931.12	gi|564290307|ref|YP_008876601.1|	-	0.023	14.5	0.0	3.8	7.3	0.0	2.4	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
ResIII	PF04851.15	gi|564290307|ref|YP_008876601.1|	-	0.034	14.2	0.0	8.8	6.3	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Rad17	PF03215.15	gi|564290307|ref|YP_008876601.1|	-	0.039	13.9	0.0	9.4	6.1	0.0	2.7	2	1	0	2	2	2	0	Rad17	P-loop	domain
Hydin_ADK	PF17213.3	gi|564290307|ref|YP_008876601.1|	-	0.045	14.0	0.0	4.3	7.6	0.0	2.4	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
Zot	PF05707.12	gi|564290307|ref|YP_008876601.1|	-	0.051	13.2	0.0	5.5	6.6	0.0	2.7	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Torsin	PF06309.11	gi|564290307|ref|YP_008876601.1|	-	0.074	13.2	0.0	4.6	7.4	0.0	2.3	2	0	0	2	2	2	0	Torsin
SKI	PF01202.22	gi|564290307|ref|YP_008876601.1|	-	0.086	13.0	0.0	11	6.1	0.0	2.6	2	0	0	2	2	2	0	Shikimate	kinase
Cytidylate_kin2	PF13189.6	gi|564290307|ref|YP_008876601.1|	-	0.09	12.9	0.0	7.1	6.7	0.0	2.5	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
Usp	PF00582.26	gi|564290308|ref|YP_008876602.1|	-	5.3e-09	36.7	1.3	7.7e-09	36.2	1.3	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF111	PF01969.17	gi|564290309|ref|YP_008876603.1|	-	4.8e-133	443.9	1.4	5.5e-133	443.7	1.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF111
SelP_N	PF04592.14	gi|564290309|ref|YP_008876603.1|	-	0.00057	19.4	7.3	0.001	18.5	7.3	1.3	1	0	0	1	1	1	1	Selenoprotein	P,	N	terminal	region
Transcrip_reg	PF01709.20	gi|564290309|ref|YP_008876603.1|	-	0.044	13.2	0.0	0.12	11.8	0.0	1.7	1	1	1	2	2	2	0	Transcriptional	regulator
Zip	PF02535.22	gi|564290309|ref|YP_008876603.1|	-	0.42	9.8	3.3	0.59	9.3	3.3	1.2	1	0	0	1	1	1	0	ZIP	Zinc	transporter
Vault	PF01505.18	gi|564290310|ref|YP_008876604.1|	-	0.14	12.3	0.1	0.48	10.6	0.0	1.9	2	0	0	2	2	2	0	Major	Vault	Protein	repeat	domain
RskA	PF10099.9	gi|564290311|ref|YP_008876605.1|	-	5.8	7.2	10.3	0.73	10.1	2.9	2.1	2	0	0	2	2	2	0	Anti-sigma-K	factor	rskA
Rad51	PF08423.11	gi|564290312|ref|YP_008876606.1|	-	1.3e-23	83.6	0.0	1.7e-23	83.2	0.0	1.0	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.6	gi|564290312|ref|YP_008876606.1|	-	5.9e-13	48.8	1.2	8.9e-13	48.2	1.2	1.1	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.21	gi|564290312|ref|YP_008876606.1|	-	4.6e-12	46.0	0.3	8.6e-12	45.1	0.3	1.4	1	1	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ATPase	PF06745.13	gi|564290312|ref|YP_008876606.1|	-	3.7e-10	39.5	0.0	1.9e-09	37.2	0.0	1.9	1	1	0	1	1	1	1	KaiC
AAA_24	PF13479.6	gi|564290312|ref|YP_008876606.1|	-	2.4e-08	33.9	0.0	3.4e-08	33.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
Zot	PF05707.12	gi|564290312|ref|YP_008876606.1|	-	8.7e-06	25.5	0.0	1.1e-05	25.2	0.0	1.1	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
DnaB_C	PF03796.15	gi|564290312|ref|YP_008876606.1|	-	0.00088	18.7	0.0	0.002	17.5	0.0	1.5	1	1	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
IstB_IS21	PF01695.17	gi|564290312|ref|YP_008876606.1|	-	0.0089	15.8	0.1	0.023	14.4	0.1	1.6	1	1	1	2	2	2	1	IstB-like	ATP	binding	protein
Isochorismatase	PF00857.20	gi|564290312|ref|YP_008876606.1|	-	0.049	13.8	0.0	0.075	13.2	0.0	1.3	1	0	0	1	1	1	0	Isochorismatase	family
MPTase-PolyVal	PF18818.1	gi|564290312|ref|YP_008876606.1|	-	0.11	12.5	0.1	0.24	11.5	0.1	1.5	1	0	0	1	1	1	0	Metallopeptidase	superfamily	domain
PhoU	PF01895.19	gi|564290313|ref|YP_008876607.1|	-	7.4e-36	122.5	17.5	5.1e-22	78.1	1.6	2.1	2	0	0	2	2	2	2	PhoU	domain
Trigger_N	PF05697.13	gi|564290313|ref|YP_008876607.1|	-	0.0079	16.5	0.4	0.051	13.9	0.0	2.1	2	0	0	2	2	2	1	Bacterial	trigger	factor	protein	(TF)
TrkA_N	PF02254.18	gi|564290315|ref|YP_008876609.1|	-	1.9e-51	173.2	12.3	1.9e-25	89.4	0.5	3.2	3	0	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|564290315|ref|YP_008876609.1|	-	1.5e-30	104.8	9.2	3.4e-16	58.8	0.4	3.5	3	1	0	3	3	3	2	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|564290315|ref|YP_008876609.1|	-	2.8e-11	43.8	2.3	5.7e-05	23.5	0.1	2.7	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|564290315|ref|YP_008876609.1|	-	6.8e-11	42.4	0.3	1.2e-05	25.4	0.1	2.5	2	0	0	2	2	2	2	Shikimate	/	quinate	5-dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|564290315|ref|YP_008876609.1|	-	1.2e-06	28.8	1.9	0.00094	19.4	0.3	2.6	2	1	0	2	2	2	2	Saccharopine	dehydrogenase	NADP	binding	domain
FAD_binding_3	PF01494.19	gi|564290315|ref|YP_008876609.1|	-	1.2e-06	28.0	0.3	0.00021	20.6	0.0	2.5	3	0	0	3	3	3	1	FAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|564290315|ref|YP_008876609.1|	-	6.4e-06	25.6	2.9	0.011	15.0	0.0	2.5	2	1	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
F420_oxidored	PF03807.17	gi|564290315|ref|YP_008876609.1|	-	3.3e-05	24.4	2.0	0.017	15.7	0.1	3.8	3	2	1	4	4	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
ADH_zinc_N	PF00107.26	gi|564290315|ref|YP_008876609.1|	-	0.00012	22.1	4.0	0.00066	19.7	0.1	3.6	3	1	1	4	4	4	1	Zinc-binding	dehydrogenase
3HCDH_N	PF02737.18	gi|564290315|ref|YP_008876609.1|	-	0.00015	21.7	0.4	0.0081	16.1	0.2	2.5	2	1	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
HEM4	PF02602.15	gi|564290315|ref|YP_008876609.1|	-	0.0002	20.8	0.0	0.00076	18.9	0.0	1.9	1	1	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
UDPG_MGDP_dh_N	PF03721.14	gi|564290315|ref|YP_008876609.1|	-	0.00032	20.3	0.1	0.0026	17.4	0.2	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564290315|ref|YP_008876609.1|	-	0.00053	19.3	0.9	0.34	10.1	0.0	2.4	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Ldh_1_N	PF00056.23	gi|564290315|ref|YP_008876609.1|	-	0.00058	20.0	0.8	1	9.5	0.2	2.4	2	0	0	2	2	2	2	lactate/malate	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|564290315|ref|YP_008876609.1|	-	0.00062	20.6	0.5	0.075	13.9	0.2	3.0	3	0	0	3	3	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Pyr_redox	PF00070.27	gi|564290315|ref|YP_008876609.1|	-	0.00077	20.0	0.2	1.8	9.2	0.0	3.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
ThiF	PF00899.21	gi|564290315|ref|YP_008876609.1|	-	0.00077	18.9	1.8	0.034	13.5	0.3	2.6	3	0	0	3	3	3	1	ThiF	family
adh_short	PF00106.25	gi|564290315|ref|YP_008876609.1|	-	0.0013	18.2	0.8	0.17	11.3	0.0	2.5	2	0	0	2	2	2	1	short	chain	dehydrogenase
XdhC_C	PF13478.6	gi|564290315|ref|YP_008876609.1|	-	0.0021	18.5	2.5	1.2	9.6	0.2	3.1	2	2	1	3	3	3	2	XdhC	Rossmann	domain
DAO	PF01266.24	gi|564290315|ref|YP_008876609.1|	-	0.0024	17.5	1.0	0.056	13.0	0.2	2.5	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
2-Hacid_dh_C	PF02826.19	gi|564290315|ref|YP_008876609.1|	-	0.0027	17.1	0.0	0.43	9.9	0.1	2.6	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Castor_Poll_mid	PF06241.12	gi|564290315|ref|YP_008876609.1|	-	0.0029	17.5	0.0	0.57	10.2	0.0	2.5	2	0	0	2	2	2	1	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
NAD_binding_2	PF03446.15	gi|564290315|ref|YP_008876609.1|	-	0.0031	17.7	0.1	0.06	13.5	0.0	2.7	2	1	1	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DUF1188	PF06690.11	gi|564290315|ref|YP_008876609.1|	-	0.0062	16.1	0.0	0.018	14.6	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1188)
ApbA	PF02558.16	gi|564290315|ref|YP_008876609.1|	-	0.0068	16.1	0.1	0.052	13.2	0.0	2.2	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_8	PF13450.6	gi|564290315|ref|YP_008876609.1|	-	0.013	15.8	0.0	8.4	6.7	0.0	2.7	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
MRP-S31	PF15433.6	gi|564290315|ref|YP_008876609.1|	-	0.092	12.4	0.0	0.13	11.9	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	28S	ribosomal	protein	S31
AdoHcyase_NAD	PF00670.21	gi|564290315|ref|YP_008876609.1|	-	0.25	11.4	4.1	0.45	10.6	1.9	2.4	2	1	1	3	3	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ThiS	PF02597.20	gi|564290315|ref|YP_008876609.1|	-	0.61	10.8	3.2	6.9	7.4	0.1	3.4	3	1	0	3	3	3	0	ThiS	family
UvrB	PF12344.8	gi|564290316|ref|YP_008876610.1|	-	0.13	12.1	0.4	0.19	11.6	0.4	1.3	1	0	0	1	1	1	0	Ultra-violet	resistance	protein	B
HTH_IclR	PF09339.10	gi|564290318|ref|YP_008876612.1|	-	0.0019	18.0	0.0	0.0044	16.8	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564290318|ref|YP_008876612.1|	-	0.0068	16.0	0.0	0.021	14.4	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564290318|ref|YP_008876612.1|	-	0.018	14.9	0.0	0.055	13.4	0.0	1.8	1	0	0	1	1	1	0	MarR	family
TrmB	PF01978.19	gi|564290318|ref|YP_008876612.1|	-	0.12	12.3	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|564290318|ref|YP_008876612.1|	-	0.17	11.8	0.0	0.35	10.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_10	PF04967.12	gi|564290319|ref|YP_008876613.1|	-	2.5e-14	52.8	0.0	4e-14	52.1	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564290319|ref|YP_008876613.1|	-	3.3e-07	30.3	2.0	5.3e-07	29.6	2.0	1.3	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
HTH_24	PF13412.6	gi|564290319|ref|YP_008876613.1|	-	1.7e-05	24.3	0.0	3.4e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564290319|ref|YP_008876613.1|	-	0.00034	20.4	0.0	0.00066	19.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Sigma70_r4	PF04545.16	gi|564290319|ref|YP_008876613.1|	-	0.0016	17.9	0.0	0.0034	16.9	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_3	PF01381.22	gi|564290319|ref|YP_008876613.1|	-	0.0037	17.3	0.0	0.0091	16.0	0.0	1.6	1	1	0	1	1	1	1	Helix-turn-helix
HTH_AsnC-type	PF13404.6	gi|564290319|ref|YP_008876613.1|	-	0.0059	16.4	0.3	0.022	14.6	0.0	2.1	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|564290319|ref|YP_008876613.1|	-	0.0092	15.6	0.0	0.02	14.6	0.0	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR	PF01047.22	gi|564290319|ref|YP_008876613.1|	-	0.04	13.8	0.0	0.091	12.7	0.0	1.7	1	0	0	1	1	1	0	MarR	family
Phage_CI_repr	PF07022.13	gi|564290319|ref|YP_008876613.1|	-	0.041	14.0	0.0	0.074	13.1	0.0	1.3	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_1	PF00126.27	gi|564290319|ref|YP_008876613.1|	-	0.11	12.5	0.1	0.97	9.4	0.0	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
UPF0547	PF10571.9	gi|564290320|ref|YP_008876614.1|	-	2.4e-05	24.3	1.8	3.3e-05	23.9	1.8	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|564290320|ref|YP_008876614.1|	-	0.00018	20.8	3.9	0.00018	20.8	3.9	1.8	2	1	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564290320|ref|YP_008876614.1|	-	0.0015	18.2	1.8	0.003	17.2	1.8	1.6	1	1	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.7	gi|564290320|ref|YP_008876614.1|	-	0.0017	18.3	2.9	0.0023	17.9	2.9	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-TFIIB	PF13453.6	gi|564290320|ref|YP_008876614.1|	-	0.0025	17.1	2.4	0.37	10.2	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	zinc-finger
DUF2089	PF09862.9	gi|564290320|ref|YP_008876614.1|	-	0.0041	17.1	0.4	0.0047	17.0	0.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
DNA_ligase_ZBD	PF03119.16	gi|564290320|ref|YP_008876614.1|	-	0.0057	16.7	2.3	0.18	11.8	0.2	2.4	2	1	1	3	3	2	2	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C4_Topoisom	PF01396.19	gi|564290320|ref|YP_008876614.1|	-	0.0074	16.0	0.7	1.2	9.0	0.2	2.3	2	0	0	2	2	2	1	Topoisomerase	DNA	binding	C4	zinc	finger
zinc-ribbons_6	PF07191.12	gi|564290320|ref|YP_008876614.1|	-	0.0097	15.9	1.4	0.013	15.4	1.4	1.3	1	0	0	1	1	1	1	zinc-ribbons
zf-Mss51	PF13824.6	gi|564290320|ref|YP_008876614.1|	-	0.014	15.4	1.0	0.019	15.1	1.0	1.2	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf_UBZ	PF18439.1	gi|564290320|ref|YP_008876614.1|	-	0.021	14.4	1.0	1.2	8.8	0.1	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Auto_anti-p27	PF06677.12	gi|564290320|ref|YP_008876614.1|	-	0.024	14.8	2.7	1.1	9.5	0.1	2.1	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
YacG	PF03884.14	gi|564290320|ref|YP_008876614.1|	-	0.025	14.3	1.6	3.7	7.4	0.1	2.2	1	1	1	2	2	2	0	DNA	gyrase	inhibitor	YacG
zf-ACC	PF17848.1	gi|564290320|ref|YP_008876614.1|	-	0.12	12.5	2.6	6.8	6.9	0.3	2.2	2	0	0	2	2	2	0	Acetyl-coA	carboxylase	zinc	finger	domain
HypA	PF01155.19	gi|564290320|ref|YP_008876614.1|	-	0.33	11.0	2.4	0.37	10.8	2.4	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_5	PF13719.6	gi|564290320|ref|YP_008876614.1|	-	0.47	10.3	5.6	2.9	7.7	0.7	2.2	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564290320|ref|YP_008876614.1|	-	0.59	10.3	6.9	1.6	8.9	4.6	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
NRDD	PF13597.6	gi|564290320|ref|YP_008876614.1|	-	1	8.0	2.9	1	8.0	2.9	1.0	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
DUF4330	PF14221.6	gi|564290321|ref|YP_008876615.1|	-	2.1e-29	102.9	9.3	4.3e-11	43.3	0.0	5.2	4	1	0	4	4	4	4	Domain	of	unknown	function	(DUF4330)
HlyD_3	PF13437.6	gi|564290321|ref|YP_008876615.1|	-	0.01	16.5	4.2	0.16	12.7	0.3	3.9	3	1	2	5	5	5	0	HlyD	family	secretion	protein
Glycos_transf_2	PF00535.26	gi|564290324|ref|YP_008876618.1|	-	5.8e-16	58.8	0.0	7.8e-16	58.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564290324|ref|YP_008876618.1|	-	4e-10	40.0	0.3	1.8e-09	37.9	0.3	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564290324|ref|YP_008876618.1|	-	0.00041	19.9	0.0	0.6	9.5	0.0	2.0	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|564290324|ref|YP_008876618.1|	-	0.00052	20.0	0.1	0.00086	19.3	0.1	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glycos_transf_1	PF00534.20	gi|564291364|ref|YP_008876620.1|	-	9.2e-39	132.7	0.0	1.3e-38	132.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564291364|ref|YP_008876620.1|	-	2.1e-30	105.9	0.1	3.5e-30	105.2	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.6	gi|564291364|ref|YP_008876620.1|	-	1.5e-12	47.7	0.0	2.8e-12	46.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564291364|ref|YP_008876620.1|	-	6.3e-08	32.8	0.3	2.6e-07	30.8	0.1	2.1	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564291364|ref|YP_008876620.1|	-	0.00092	19.7	0.1	0.006	17.0	0.0	2.2	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
Nif11	PF07862.11	gi|564291364|ref|YP_008876620.1|	-	0.07	13.4	0.3	2	8.8	0.1	2.5	2	0	0	2	2	2	0	Nif11	domain
Sulfatase	PF00884.23	gi|564291365|ref|YP_008876621.1|	-	3e-18	66.3	0.0	5.1e-18	65.5	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564291365|ref|YP_008876621.1|	-	7.2e-07	29.1	0.1	1.5e-06	28.1	0.0	1.5	2	0	0	2	2	2	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|564291365|ref|YP_008876621.1|	-	0.003	16.2	0.0	0.003	16.2	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
Glycos_transf_2	PF00535.26	gi|564291366|ref|YP_008876622.1|	-	4.9e-21	75.3	0.0	7.6e-21	74.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564291366|ref|YP_008876622.1|	-	4.2e-15	56.3	0.0	5.8e-15	55.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564291366|ref|YP_008876622.1|	-	7.6e-13	48.6	0.1	4.5e-12	46.0	0.1	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Amidoligase_2	PF12224.8	gi|564291366|ref|YP_008876622.1|	-	0.0085	15.8	0.0	0.018	14.7	0.0	1.5	1	0	0	1	1	1	1	Putative	amidoligase	enzyme
Wzy_C	PF04932.15	gi|564291367|ref|YP_008876623.1|	-	3e-08	33.4	9.6	3e-08	33.4	9.6	4.4	3	2	0	3	3	3	2	O-Antigen	ligase
Glycos_transf_1	PF00534.20	gi|564291369|ref|YP_008876625.1|	-	0.00011	21.8	0.0	0.00011	21.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
dCache_1	PF02743.18	gi|564291369|ref|YP_008876625.1|	-	0.027	14.3	0.0	0.032	14.0	0.0	1.1	1	0	0	1	1	1	0	Cache	domain
Glycos_transf_1	PF00534.20	gi|564290326|ref|YP_008876627.1|	-	3.3e-39	134.2	0.0	5.8e-39	133.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564290326|ref|YP_008876627.1|	-	5.5e-28	98.1	0.0	1.1e-27	97.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564290326|ref|YP_008876627.1|	-	8.3e-15	55.2	0.6	1.2e-14	54.6	0.6	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|564290326|ref|YP_008876627.1|	-	1.3e-09	38.3	0.0	3.3e-09	37.0	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|564290326|ref|YP_008876627.1|	-	2.2e-06	28.2	0.0	3.9e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|564290326|ref|YP_008876627.1|	-	2.2e-05	24.5	0.1	0.08	13.0	0.0	2.6	3	0	0	3	3	3	2	Glycosyl	transferase	4-like
Glyco_hydro_88	PF07470.13	gi|564291371|ref|YP_008876628.1|	-	1.8e-19	70.1	6.6	2.4e-19	69.6	6.6	1.1	1	0	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
Glyco_hydro_127	PF07944.12	gi|564291371|ref|YP_008876628.1|	-	1.3e-06	27.2	0.1	0.051	12.1	0.0	2.9	1	1	1	2	2	2	2	Beta-L-arabinofuranosidase,	GH127
Glyco_hydro_76	PF03663.14	gi|564291371|ref|YP_008876628.1|	-	4e-06	26.6	10.0	0.0007	19.2	3.2	3.2	1	1	1	2	2	2	2	Glycosyl	hydrolase	family	76
Pec_lyase	PF09492.10	gi|564291371|ref|YP_008876628.1|	-	0.0029	17.0	0.1	16	4.7	0.0	4.1	2	2	3	5	5	5	2	Pectic	acid	lyase
GlcNAc_2-epim	PF07221.11	gi|564291371|ref|YP_008876628.1|	-	0.012	14.8	0.0	3.5	6.8	0.0	2.6	2	1	0	2	2	2	0	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
LANC_like	PF05147.13	gi|564291371|ref|YP_008876628.1|	-	0.028	13.0	1.9	3.6	6.1	0.0	3.8	3	1	1	4	4	4	0	Lanthionine	synthetase	C-like	protein
Prenyltrans	PF00432.21	gi|564291371|ref|YP_008876628.1|	-	0.057	13.2	0.5	23	4.8	0.0	3.3	3	0	0	3	3	3	0	Prenyltransferase	and	squalene	oxidase	repeat
Glyco_trans_1_4	PF13692.6	gi|564290327|ref|YP_008876630.1|	-	2.8e-23	82.8	0.0	7.6e-23	81.4	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.20	gi|564290327|ref|YP_008876630.1|	-	5.2e-23	81.5	0.0	8.4e-23	80.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564290327|ref|YP_008876630.1|	-	1.8e-17	63.9	0.0	2.5e-17	63.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564290327|ref|YP_008876630.1|	-	1.8e-13	51.3	0.0	2.4e-13	50.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564290327|ref|YP_008876630.1|	-	3.4e-09	37.0	0.0	7.9e-09	35.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Methyltransf_24	PF13578.6	gi|564290328|ref|YP_008876631.1|	-	2.3e-14	54.3	0.1	4.8e-14	53.3	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
CmcI	PF04989.12	gi|564290328|ref|YP_008876631.1|	-	2.5e-11	43.7	0.0	3.2e-11	43.3	0.0	1.2	1	0	0	1	1	1	1	Cephalosporin	hydroxylase
FtsJ	PF01728.19	gi|564290328|ref|YP_008876631.1|	-	6.6e-06	26.3	0.0	9e-06	25.9	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_23	PF13489.6	gi|564290328|ref|YP_008876631.1|	-	0.024	14.5	0.0	0.046	13.6	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Polysacc_synt_3	PF13440.6	gi|564291373|ref|YP_008876632.1|	-	8.5e-82	274.7	3.7	8.5e-82	274.7	3.7	2.0	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|564291373|ref|YP_008876632.1|	-	4e-37	128.1	11.4	4e-37	128.1	11.4	2.2	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Orai-1	PF07856.12	gi|564291373|ref|YP_008876632.1|	-	0.00042	20.1	1.0	0.00087	19.0	0.1	2.0	2	0	0	2	2	2	1	Mediator	of	CRAC	channel	activity
IRK_N	PF08466.10	gi|564290329|ref|YP_008876633.1|	-	0.058	13.6	0.1	0.087	13.0	0.1	1.3	1	0	0	1	1	1	0	Inward	rectifier	potassium	channel	N-terminal
SecY	PF00344.20	gi|564290330|ref|YP_008876634.1|	-	1.2e-70	238.2	16.9	1.5e-70	237.9	16.9	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.9	gi|564290330|ref|YP_008876634.1|	-	2.9e-09	36.6	0.9	7.6e-09	35.3	0.9	1.8	1	0	0	1	1	1	1	Plug	domain	of	Sec61p
Ribosomal_L27A	PF00828.19	gi|564290331|ref|YP_008876635.1|	-	3e-18	66.7	0.3	4.8e-18	66.1	0.3	1.3	1	0	0	1	1	1	1	Ribosomal	proteins	50S-L15,	50S-L18e,	60S-L27A
Ribosomal_L30	PF00327.20	gi|564290332|ref|YP_008876636.1|	-	3.2e-09	36.5	0.0	4.8e-09	36.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
CAF1A	PF12253.8	gi|564290332|ref|YP_008876636.1|	-	0.036	14.2	0.1	0.056	13.6	0.1	1.3	1	0	0	1	1	1	0	Chromatin	assembly	factor	1	subunit	A
Ribosomal_S5_C	PF03719.15	gi|564290333|ref|YP_008876637.1|	-	8e-25	86.1	0.0	1.2e-24	85.6	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.20	gi|564290333|ref|YP_008876637.1|	-	4.1e-22	77.9	0.1	9.5e-22	76.8	0.1	1.6	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_L5e	PF17144.4	gi|564290334|ref|YP_008876638.1|	-	1.2e-27	96.9	0.0	1.8e-17	63.8	0.0	2.2	1	1	1	2	2	2	2	Ribosomal	large	subunit	proteins	60S	L5,	and	50S	L18
Ribosomal_L18p	PF00861.22	gi|564290334|ref|YP_008876638.1|	-	8.9e-08	32.5	0.0	1.2e-07	32.1	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	L18	of	archaea,	bacteria,	mitoch.	and	chloroplast
Ribosomal_L19e	PF01280.20	gi|564290335|ref|YP_008876639.1|	-	1.1e-56	191.0	5.7	1.2e-56	190.8	5.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
SHOCT	PF09851.9	gi|564290335|ref|YP_008876639.1|	-	0.03	14.0	1.1	0.53	10.1	0.3	3.0	2	1	0	2	2	2	0	Short	C-terminal	domain
SAND	PF01342.21	gi|564290335|ref|YP_008876639.1|	-	0.15	11.8	0.2	0.24	11.1	0.2	1.3	1	0	0	1	1	1	0	SAND	domain
Ribosomal_L32e	PF01655.18	gi|564290336|ref|YP_008876640.1|	-	2.2e-35	121.4	0.4	7.7e-35	119.6	0.6	1.7	2	0	0	2	2	2	1	Ribosomal	protein	L32
HHH_5	PF14520.6	gi|564290336|ref|YP_008876640.1|	-	1.3e-14	54.5	1.5	1.1e-13	51.5	0.1	2.6	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
DNA_pol_lambd_f	PF10391.9	gi|564290336|ref|YP_008876640.1|	-	7.6e-07	28.9	0.0	5e-06	26.3	0.0	2.3	1	1	1	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|564290336|ref|YP_008876640.1|	-	6e-06	25.9	0.2	0.012	15.5	0.0	3.2	3	0	0	3	3	3	2	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|564290336|ref|YP_008876640.1|	-	1.6e-05	25.1	0.0	0.00037	20.7	0.0	2.8	2	2	1	3	3	3	1	Pathogenicity	locus
HHH_2	PF12826.7	gi|564290336|ref|YP_008876640.1|	-	0.00015	21.7	0.1	0.0014	18.7	0.1	2.2	1	1	1	2	2	2	2	Helix-hairpin-helix	motif
HHH_8	PF14716.6	gi|564290336|ref|YP_008876640.1|	-	0.0035	17.7	0.2	0.81	10.1	0.1	2.6	1	1	1	2	2	2	2	Helix-hairpin-helix	domain
HHH_3	PF12836.7	gi|564290336|ref|YP_008876640.1|	-	0.004	17.4	0.1	1	9.6	0.1	2.6	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
BAF	PF02961.14	gi|564290336|ref|YP_008876640.1|	-	0.062	13.7	0.0	1.3	9.5	0.0	2.5	2	0	0	2	2	2	0	Barrier	to	autointegration	factor
IMS_HHH	PF11798.8	gi|564290336|ref|YP_008876640.1|	-	0.12	12.7	0.0	6.5	7.3	0.0	2.5	2	0	0	2	2	2	0	IMS	family	HHH	motif
Ribosomal_L6	PF00347.23	gi|564290337|ref|YP_008876641.1|	-	3.8e-31	107.6	0.3	6.7e-15	55.5	0.0	2.0	2	0	0	2	2	2	2	Ribosomal	protein	L6
ArsA_HSP20	PF17886.1	gi|564290337|ref|YP_008876641.1|	-	0.16	11.5	2.4	22	4.7	0.0	3.5	4	0	0	4	4	4	0	HSP20-like	domain	found	in	ArsA
Ribosomal_S8	PF00410.19	gi|564290338|ref|YP_008876642.1|	-	3e-23	82.2	0.0	3.9e-23	81.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_S14	PF00253.21	gi|564290339|ref|YP_008876643.1|	-	4.1e-10	39.3	1.3	4.5e-10	39.1	1.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
DUF4428	PF14471.6	gi|564290339|ref|YP_008876643.1|	-	0.0014	18.5	0.1	0.0018	18.2	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
Ribosomal_L5	PF00281.19	gi|564290340|ref|YP_008876644.1|	-	3.6e-20	72.0	0.0	6e-20	71.3	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_L5_C	PF00673.21	gi|564290340|ref|YP_008876644.1|	-	2.2e-19	69.4	0.0	3.5e-19	68.8	0.0	1.4	1	0	0	1	1	1	1	ribosomal	L5P	family	C-terminus
Ribosomal_S4e	PF00900.20	gi|564290341|ref|YP_008876645.1|	-	5.3e-19	67.9	0.0	1e-18	67.0	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.12	gi|564290341|ref|YP_008876645.1|	-	1.3e-09	37.9	0.0	2.2e-09	37.2	0.0	1.4	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.25	gi|564290341|ref|YP_008876645.1|	-	1.9e-05	24.3	0.3	4.4e-05	23.1	0.0	1.8	2	0	0	2	2	2	1	S4	domain
KOW	PF00467.29	gi|564290341|ref|YP_008876645.1|	-	0.0027	17.6	0.2	0.0096	15.9	0.1	2.1	1	1	0	1	1	1	1	KOW	motif
Peptidase_S24	PF00717.23	gi|564290341|ref|YP_008876645.1|	-	0.01	15.7	0.1	0.027	14.4	0.1	1.8	1	0	0	1	1	1	0	Peptidase	S24-like
Nha1_C	PF08619.10	gi|564290341|ref|YP_008876645.1|	-	0.42	9.8	0.8	0.57	9.3	0.8	1.1	1	0	0	1	1	1	0	Alkali	metal	cation/H+	antiporter	Nha1	C	terminus
Ribosomal_L26	PF16906.5	gi|564290342|ref|YP_008876646.1|	-	2.6e-23	82.3	0.1	3e-23	82.1	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	proteins	L26	eukaryotic,	L24P	archaeal
KOW	PF00467.29	gi|564290342|ref|YP_008876646.1|	-	8.1e-09	35.1	1.4	1.4e-08	34.4	0.4	1.9	2	0	0	2	2	2	1	KOW	motif
DUF4162	PF13732.6	gi|564290342|ref|YP_008876646.1|	-	0.05	14.3	0.4	0.078	13.7	0.4	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
Ribosomal_L14	PF00238.19	gi|564290343|ref|YP_008876647.1|	-	4.2e-36	123.7	0.2	5e-36	123.5	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_S17	PF00366.20	gi|564290344|ref|YP_008876648.1|	-	1.9e-26	92.0	0.8	2.3e-26	91.7	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_S17_N	PF16205.5	gi|564290344|ref|YP_008876648.1|	-	0.0057	17.0	0.0	0.011	16.1	0.0	1.5	1	0	0	1	1	1	1	Ribosomal_S17	N-terminal
UPF0086	PF01868.16	gi|564290345|ref|YP_008876649.1|	-	1.5e-24	85.7	0.0	1.7e-24	85.6	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_L29	PF00831.23	gi|564290346|ref|YP_008876650.1|	-	6.3e-20	70.9	0.2	8.3e-20	70.5	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
Ribosomal_S3_C	PF00189.20	gi|564290347|ref|YP_008876651.1|	-	5.7e-21	74.8	0.8	1.2e-20	73.8	0.7	1.6	2	0	0	2	2	2	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.17	gi|564290347|ref|YP_008876651.1|	-	6.6e-17	61.1	0.0	1.7e-16	59.8	0.0	1.7	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.29	gi|564290347|ref|YP_008876651.1|	-	0.00047	19.9	0.5	0.0058	16.4	0.1	2.9	3	0	0	3	3	3	1	KH	domain
KH_4	PF13083.6	gi|564290347|ref|YP_008876651.1|	-	4.6	7.2	5.7	0.54	10.2	0.2	2.4	2	1	0	2	2	2	0	KH	domain
Ribosomal_L22	PF00237.19	gi|564290348|ref|YP_008876652.1|	-	6.6e-21	74.5	0.0	8.2e-21	74.2	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S19	PF00203.21	gi|564290349|ref|YP_008876653.1|	-	8.4e-30	102.5	0.0	1.5e-29	101.7	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S19
Citrate_synt	PF00285.21	gi|564290349|ref|YP_008876653.1|	-	0.13	11.3	0.0	0.14	11.2	0.0	1.1	1	0	0	1	1	1	0	Citrate	synthase,	C-terminal	domain
Ribosomal_L2_C	PF03947.18	gi|564290350|ref|YP_008876654.1|	-	4e-46	156.3	2.0	6e-46	155.7	2.0	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.23	gi|564290350|ref|YP_008876654.1|	-	8.9e-18	64.0	0.0	3.6e-17	62.1	0.0	2.1	2	0	0	2	2	2	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_L23	PF00276.20	gi|564290351|ref|YP_008876655.1|	-	1.7e-16	60.3	1.2	1.4e-15	57.4	1.2	1.9	1	1	0	1	1	1	1	Ribosomal	protein	L23
Fusion_F0	PF13044.6	gi|564290351|ref|YP_008876655.1|	-	0.12	11.0	0.2	0.12	11.0	0.2	1.0	1	0	0	1	1	1	0	Fusion	glycoprotein	F0,	Isavirus
TusA	PF01206.17	gi|564290351|ref|YP_008876655.1|	-	0.14	12.0	0.2	0.19	11.6	0.2	1.3	1	1	0	1	1	1	0	Sulfurtransferase	TusA
Ribosomal_L4	PF00573.22	gi|564290352|ref|YP_008876656.1|	-	1.2e-40	139.3	0.1	1.4e-40	139.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.22	gi|564290353|ref|YP_008876657.1|	-	1.5e-110	369.6	0.0	3.7e-110	368.4	0.0	1.6	1	1	0	1	1	1	1	Ribosomal	protein	L3
Methyltrn_RNA_3	PF02598.17	gi|564290354|ref|YP_008876658.1|	-	1.4e-67	228.3	0.0	1.5e-67	228.1	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
DUF1508	PF07411.12	gi|564290355|ref|YP_008876659.1|	-	4.3e-43	144.9	3.2	3.9e-21	74.7	0.5	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1508)
Tombus_P19	PF03220.13	gi|564290355|ref|YP_008876659.1|	-	0.0011	18.8	0.2	0.058	13.1	0.0	2.2	2	0	0	2	2	2	1	Tombusvirus	P19	core	protein
CBM9_1	PF06452.11	gi|564290355|ref|YP_008876659.1|	-	0.0027	17.6	1.8	0.0038	17.1	1.8	1.3	1	1	0	1	1	1	1	Carbohydrate	family	9	binding	domain-like
DUF406	PF04175.12	gi|564290355|ref|YP_008876659.1|	-	0.069	13.6	1.1	16	6.0	0.0	3.5	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF406)
DUF4097	PF13349.6	gi|564290355|ref|YP_008876659.1|	-	0.073	12.4	0.7	0.43	9.9	0.1	2.1	2	1	1	3	3	3	0	Putative	adhesin
SpaA	PF17802.1	gi|564290355|ref|YP_008876659.1|	-	0.085	13.2	5.0	0.083	13.2	0.7	2.5	2	1	1	3	3	3	0	Prealbumin-like	fold	domain
IMP2_C	PF18591.1	gi|564290355|ref|YP_008876659.1|	-	0.11	12.3	0.0	0.23	11.4	0.0	1.5	1	0	0	1	1	1	0	Immune	Mapped	Protein	2	(IMP2)	C-terminal	domain
Thiamine_BP	PF01910.17	gi|564290356|ref|YP_008876660.1|	-	2.8e-25	88.0	0.2	3.4e-25	87.8	0.2	1.0	1	0	0	1	1	1	1	Thiamine-binding	protein
AvrL567-A	PF11529.8	gi|564290356|ref|YP_008876660.1|	-	0.15	12.3	0.0	0.16	12.2	0.0	1.2	1	0	0	1	1	1	0	Melampsora	lini	avirulence	protein	AvrL567-A
MCH	PF02289.16	gi|564290357|ref|YP_008876661.1|	-	6.7e-113	377.1	1.1	7.5e-113	376.9	1.1	1.0	1	0	0	1	1	1	1	Cyclohydrolase	(MCH)
GTP_EFTU	PF00009.27	gi|564290359|ref|YP_008876663.1|	-	1.7e-33	115.8	0.3	2.5e-33	115.3	0.3	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.25	gi|564290359|ref|YP_008876663.1|	-	4.5e-12	46.2	0.6	1.4e-11	44.6	0.6	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.17	gi|564290359|ref|YP_008876663.1|	-	1.9e-06	28.1	0.0	7.3e-06	26.3	0.0	2.0	1	1	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
RsgA_GTPase	PF03193.16	gi|564290359|ref|YP_008876663.1|	-	0.0052	16.7	0.8	0.3	11.0	0.1	2.9	2	1	0	2	2	2	1	RsgA	GTPase
ATP_bind_1	PF03029.17	gi|564290359|ref|YP_008876663.1|	-	0.0063	16.3	1.9	0.014	15.2	0.1	2.0	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
Polysacc_deac_1	PF01522.21	gi|564290359|ref|YP_008876663.1|	-	0.077	12.9	0.1	0.13	12.2	0.1	1.4	1	0	0	1	1	1	0	Polysaccharide	deacetylase
MMR_HSR1	PF01926.23	gi|564290359|ref|YP_008876663.1|	-	0.082	13.0	0.1	0.49	10.5	0.1	2.2	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Hydrolase_3	PF08282.12	gi|564290360|ref|YP_008876664.1|	-	1.3e-26	93.9	0.0	7.4e-17	61.9	0.0	2.1	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564290360|ref|YP_008876664.1|	-	1.3e-08	35.4	1.6	0.00057	20.2	0.0	3.1	2	1	1	3	3	3	3	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|564290360|ref|YP_008876664.1|	-	1.5e-08	34.5	0.0	2.4e-07	30.6	0.0	2.1	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.7	gi|564290360|ref|YP_008876664.1|	-	0.021	15.2	2.5	6.3	7.1	0.0	3.1	2	1	1	3	3	3	0	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564290360|ref|YP_008876664.1|	-	0.025	14.7	0.0	1.4	9.0	0.0	2.2	2	0	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.16	gi|564290360|ref|YP_008876664.1|	-	0.1	11.7	0.0	1.1	8.3	0.0	2.1	2	0	0	2	2	2	0	Trehalose-phosphatase
DnaJ	PF00226.31	gi|564290361|ref|YP_008876665.1|	-	7e-15	54.9	0.0	1e-14	54.4	0.0	1.3	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.6	gi|564290361|ref|YP_008876665.1|	-	0.012	15.5	0.0	0.025	14.5	0.0	1.6	1	1	0	1	1	1	0	A	repeated	domain	in	UCH-protein
CobD_Cbib	PF03186.13	gi|564290361|ref|YP_008876665.1|	-	0.064	12.5	0.2	0.11	11.8	0.2	1.2	1	0	0	1	1	1	0	CobD/Cbib	protein
TPR_21	PF09976.9	gi|564290361|ref|YP_008876665.1|	-	0.084	12.6	0.0	0.2	11.3	0.0	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat-like	domain
eIF-3_zeta	PF05091.12	gi|564290361|ref|YP_008876665.1|	-	0.26	10.2	2.0	0.3	10.0	2.0	1.0	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	7	(eIF-3)
Ribonuc_red_lgC	PF02867.15	gi|564290362|ref|YP_008876666.1|	-	1.1e-158	529.0	0.0	1.4e-158	528.7	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.21	gi|564290362|ref|YP_008876666.1|	-	1.3e-25	89.2	0.0	5e-25	87.3	0.0	2.1	2	0	0	2	2	2	1	Ribonucleotide	reductase,	all-alpha	domain
Oxidored_molyb	PF00174.19	gi|564290364|ref|YP_008876668.1|	-	8.2e-36	123.2	0.0	1.4e-35	122.5	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Mo-co_dimer	PF03404.16	gi|564290364|ref|YP_008876668.1|	-	2e-10	40.8	0.0	4.7e-10	39.6	0.0	1.6	1	0	0	1	1	1	1	Mo-co	oxidoreductase	dimerisation	domain
BNR	PF02012.20	gi|564290364|ref|YP_008876668.1|	-	0.061	13.3	0.2	0.18	11.9	0.2	1.9	1	0	0	1	1	1	0	BNR/Asp-box	repeat
BPL_LplA_LipB_2	PF16917.5	gi|564290364|ref|YP_008876668.1|	-	0.43	10.1	3.6	0.73	9.3	3.6	1.3	1	0	0	1	1	1	0	Biotin/lipoate	A/B	protein	ligase	family
PAS_9	PF13426.7	gi|564290365|ref|YP_008876669.1|	-	1.1e-42	144.5	2.0	1.7e-13	50.7	0.1	4.4	4	0	0	4	4	4	4	PAS	domain
PAS_4	PF08448.10	gi|564290365|ref|YP_008876669.1|	-	3.4e-42	143.2	5.4	5.9e-16	58.7	0.2	4.2	4	0	0	4	4	4	3	PAS	fold
PAS	PF00989.25	gi|564290365|ref|YP_008876669.1|	-	7e-39	132.3	1.2	5.3e-14	52.2	0.0	3.8	4	0	0	4	4	4	3	PAS	fold
PAS_3	PF08447.12	gi|564290365|ref|YP_008876669.1|	-	6e-38	129.0	0.1	2e-13	50.4	0.1	4.5	4	0	0	4	4	4	4	PAS	fold
PAS_8	PF13188.7	gi|564290365|ref|YP_008876669.1|	-	9.2e-21	73.4	0.7	3.4e-07	30.1	0.0	4.7	5	0	0	5	5	5	3	PAS	domain
Response_reg	PF00072.24	gi|564290365|ref|YP_008876669.1|	-	1.1e-20	73.8	0.0	3.3e-20	72.3	0.0	1.8	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|564290365|ref|YP_008876669.1|	-	2.8e-15	56.8	0.0	6.6e-15	55.6	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564290365|ref|YP_008876669.1|	-	2.6e-13	49.8	0.2	1.4e-12	47.5	0.2	2.4	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|564290365|ref|YP_008876669.1|	-	0.0028	18.2	0.1	0.37	11.4	0.0	3.3	3	1	0	3	3	3	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564290365|ref|YP_008876669.1|	-	0.0058	16.6	0.7	0.022	14.7	0.2	2.2	2	1	0	2	2	2	1	Histidine	kinase-like	ATPase	domain
SNARE_assoc	PF09335.11	gi|564290366|ref|YP_008876670.1|	-	1.5e-17	64.2	5.2	1.5e-17	64.2	5.2	1.7	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
DUF2240	PF09999.9	gi|564290367|ref|YP_008876671.1|	-	0.11	12.1	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2240)
SlyX	PF04102.12	gi|564290368|ref|YP_008876672.1|	-	0.0023	18.5	4.3	0.006	17.2	4.3	1.7	1	0	0	1	1	1	1	SlyX
DUF16	PF01519.16	gi|564290368|ref|YP_008876672.1|	-	0.0058	17.1	1.4	0.01	16.3	0.9	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF16
MPS2	PF17060.5	gi|564290368|ref|YP_008876672.1|	-	0.07	12.4	0.4	0.13	11.5	0.4	1.3	1	0	0	1	1	1	0	Monopolar	spindle	protein	2
COG2	PF06148.11	gi|564290368|ref|YP_008876672.1|	-	0.11	12.6	1.0	0.19	11.8	1.0	1.4	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF4140	PF13600.6	gi|564290368|ref|YP_008876672.1|	-	0.14	12.6	5.0	0.2	12.1	4.1	1.8	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4407	PF14362.6	gi|564290368|ref|YP_008876672.1|	-	0.14	11.5	3.5	0.19	11.0	3.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
ATG16	PF08614.11	gi|564290368|ref|YP_008876672.1|	-	0.51	10.5	7.8	0.97	9.6	7.8	1.4	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DivIC	PF04977.15	gi|564290368|ref|YP_008876672.1|	-	5	7.0	7.0	12	5.8	7.0	1.7	1	1	0	1	1	1	0	Septum	formation	initiator
HalX	PF08663.10	gi|564290369|ref|YP_008876673.1|	-	5.6e-22	77.8	8.6	1.8e-21	76.2	8.6	1.9	1	0	0	1	1	1	1	HalX	domain
Response_reg	PF00072.24	gi|564290369|ref|YP_008876673.1|	-	2.5e-18	66.3	0.8	5e-18	65.3	0.8	1.5	1	0	0	1	1	1	1	Response	regulator	receiver	domain
MtrG	PF04210.13	gi|564290369|ref|YP_008876673.1|	-	0.13	12.1	0.1	0.3	11.0	0.1	1.6	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Radical_SAM	PF04055.21	gi|564290369|ref|YP_008876673.1|	-	0.14	12.5	0.4	0.58	10.5	0.1	1.9	1	1	0	2	2	2	0	Radical	SAM	superfamily
TssO	PF17561.2	gi|564290369|ref|YP_008876673.1|	-	0.15	12.1	0.2	0.24	11.5	0.2	1.2	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssO
Putative_PNPOx	PF01243.20	gi|564290370|ref|YP_008876674.1|	-	0.037	14.2	0.0	0.052	13.7	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF4349	PF14257.6	gi|564290372|ref|YP_008876676.1|	-	0.079	12.4	0.1	0.11	11.9	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
adh_short	PF00106.25	gi|564290373|ref|YP_008876677.1|	-	3.7e-36	124.4	0.0	5.7e-36	123.8	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564290373|ref|YP_008876677.1|	-	4e-27	95.3	0.1	6.4e-27	94.6	0.1	1.3	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564290373|ref|YP_008876677.1|	-	7.9e-06	25.9	0.2	1.3e-05	25.2	0.2	1.3	1	1	0	1	1	1	1	KR	domain
EF-hand_8	PF13833.6	gi|564290373|ref|YP_008876677.1|	-	0.081	12.8	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	EF-hand	domain	pair
Peptidase_M50	PF02163.22	gi|564290377|ref|YP_008876681.1|	-	7.3e-10	38.5	9.6	2e-05	24.0	0.3	2.5	1	1	1	2	2	2	2	Peptidase	family	M50
SMC_ScpA	PF02616.14	gi|564290378|ref|YP_008876682.1|	-	3e-12	47.0	0.0	4.7e-09	36.5	0.0	2.2	2	0	0	2	2	2	2	Segregation	and	condensation	protein	ScpA
XkdW	PF09636.10	gi|564290378|ref|YP_008876682.1|	-	0.18	11.9	0.5	26	5.0	0.1	2.8	2	1	1	3	3	3	0	XkdW	protein
SMC_N	PF02463.19	gi|564290379|ref|YP_008876683.1|	-	1.2e-41	142.5	75.8	2.7e-40	138.1	75.8	3.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
SMC_hinge	PF06470.13	gi|564290379|ref|YP_008876683.1|	-	1.2e-28	99.8	0.0	3.3e-28	98.3	0.0	1.8	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
AAA_23	PF13476.6	gi|564290379|ref|YP_008876683.1|	-	6.4e-14	52.9	26.1	6.4e-14	52.9	26.1	8.8	2	2	1	3	3	1	1	AAA	domain
AAA_15	PF13175.6	gi|564290379|ref|YP_008876683.1|	-	1.2e-11	44.9	57.0	4.7e-11	43.0	0.2	5.0	2	2	2	4	4	4	1	AAA	ATPase	domain
Spc7	PF08317.11	gi|564290379|ref|YP_008876683.1|	-	6.8e-10	38.3	146.7	0.0016	17.4	18.0	8.0	2	2	6	8	8	8	5	Spc7	kinetochore	protein
AAA_21	PF13304.6	gi|564290379|ref|YP_008876683.1|	-	9e-08	32.3	36.7	3.5e-05	23.8	0.0	5.5	3	2	0	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|564290379|ref|YP_008876683.1|	-	2.2e-07	30.0	106.0	0.00085	18.1	33.5	5.9	3	2	3	6	6	6	2	AAA	domain
AAA_29	PF13555.6	gi|564290379|ref|YP_008876683.1|	-	1.1e-06	28.3	0.0	2.6e-06	27.1	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ATG16	PF08614.11	gi|564290379|ref|YP_008876683.1|	-	2.1e-06	28.1	154.0	0.025	14.8	28.2	8.2	3	2	5	8	8	8	5	Autophagy	protein	16	(ATG16)
Fib_alpha	PF08702.10	gi|564290379|ref|YP_008876683.1|	-	4.1e-06	27.0	79.7	7e-05	23.0	7.8	7.3	3	2	3	7	7	7	3	Fibrinogen	alpha/beta	chain	family
DUF745	PF05335.13	gi|564290379|ref|YP_008876683.1|	-	0.00017	21.3	9.7	0.00017	21.3	9.7	6.7	3	2	4	7	7	7	1	Protein	of	unknown	function	(DUF745)
Lebercilin	PF15619.6	gi|564290379|ref|YP_008876683.1|	-	0.00019	21.2	19.4	0.00019	21.2	19.4	6.3	3	2	3	6	6	6	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF948	PF06103.11	gi|564290379|ref|YP_008876683.1|	-	0.0016	18.7	2.2	0.0016	18.7	2.2	8.8	4	3	5	9	9	8	1	Bacterial	protein	of	unknown	function	(DUF948)
MscS_porin	PF12795.7	gi|564290379|ref|YP_008876683.1|	-	0.0085	15.7	119.4	0.015	14.9	4.8	6.6	2	2	5	7	7	7	5	Mechanosensitive	ion	channel	porin	domain
DUF724	PF05266.14	gi|564290379|ref|YP_008876683.1|	-	0.0096	15.8	11.6	0.0096	15.8	11.6	8.5	2	2	7	9	9	9	5	Protein	of	unknown	function	(DUF724)
TMF_DNA_bd	PF12329.8	gi|564290379|ref|YP_008876683.1|	-	0.012	15.6	11.1	0.012	15.6	11.1	12.0	3	3	7	13	13	12	0	TATA	element	modulatory	factor	1	DNA	binding
ABC_tran_CTD	PF16326.5	gi|564290379|ref|YP_008876683.1|	-	0.014	15.6	173.6	0.041	14.1	13.3	13.1	5	5	7	13	13	12	0	ABC	transporter	C-terminal	domain
APG6_N	PF17675.1	gi|564290379|ref|YP_008876683.1|	-	0.02	15.4	187.5	0.32	11.5	28.5	9.9	2	2	6	9	9	8	0	Apg6	coiled-coil	region
CENP-F_leu_zip	PF10473.9	gi|564290379|ref|YP_008876683.1|	-	0.037	14.0	157.6	0.019	15.0	19.1	8.7	3	2	4	7	7	6	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Atg14	PF10186.9	gi|564290379|ref|YP_008876683.1|	-	0.042	12.9	96.2	0.0089	15.2	7.5	6.6	2	2	4	6	6	6	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF4407	PF14362.6	gi|564290379|ref|YP_008876683.1|	-	0.12	11.7	115.2	0.29	10.5	12.5	6.8	2	2	4	6	6	6	0	Domain	of	unknown	function	(DUF4407)
DUF1664	PF07889.12	gi|564290379|ref|YP_008876683.1|	-	0.18	11.9	88.7	0.43	10.6	7.3	10.2	2	2	12	14	14	14	0	Protein	of	unknown	function	(DUF1664)
Baculo_PEP_C	PF04513.12	gi|564290379|ref|YP_008876683.1|	-	0.22	11.6	42.9	1	9.4	1.7	8.1	3	2	5	9	9	9	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
EzrA	PF06160.12	gi|564290379|ref|YP_008876683.1|	-	0.45	8.6	124.3	0.011	14.0	23.7	4.8	2	2	1	3	3	3	0	Septation	ring	formation	regulator,	EzrA
FPP	PF05911.11	gi|564290379|ref|YP_008876683.1|	-	0.82	7.8	117.9	0.014	13.7	12.4	5.1	2	2	3	5	5	5	0	Filament-like	plant	protein,	long	coiled-coil
MukB	PF04310.12	gi|564290379|ref|YP_008876683.1|	-	1.5	8.6	0.0	1.5	8.6	0.0	5.4	6	0	0	6	6	5	0	MukB	N-terminal
GAS	PF13851.6	gi|564290379|ref|YP_008876683.1|	-	1.6	8.0	126.8	0.16	11.3	11.8	7.3	2	2	5	7	7	6	0	Growth-arrest	specific	micro-tubule	binding
Fez1	PF06818.15	gi|564290379|ref|YP_008876683.1|	-	1.9	8.9	129.2	0.49	10.8	15.3	7.2	2	2	4	6	6	6	0	Fez1
Laminin_II	PF06009.12	gi|564290379|ref|YP_008876683.1|	-	3.3	7.7	84.3	0.34	10.9	4.0	9.4	3	2	5	11	11	11	0	Laminin	Domain	II
UPF0242	PF06785.11	gi|564290379|ref|YP_008876683.1|	-	3.4	7.7	152.8	1.2	9.2	18.5	6.8	2	2	4	6	6	6	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
SlyX	PF04102.12	gi|564290380|ref|YP_008876684.1|	-	0.0019	18.8	0.1	0.0019	18.8	0.1	1.6	2	0	0	2	2	2	1	SlyX
Spc7	PF08317.11	gi|564290380|ref|YP_008876684.1|	-	0.0025	16.8	0.6	0.0031	16.5	0.3	1.3	1	1	0	1	1	1	1	Spc7	kinetochore	protein
DUF3583	PF12126.8	gi|564290380|ref|YP_008876684.1|	-	0.0035	16.8	1.7	0.0039	16.7	1.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3583)
FlaC_arch	PF05377.11	gi|564290380|ref|YP_008876684.1|	-	0.0064	16.9	1.4	0.011	16.1	1.4	1.4	1	0	0	1	1	1	1	Flagella	accessory	protein	C	(FlaC)
CobT	PF06213.12	gi|564290380|ref|YP_008876684.1|	-	0.012	15.1	8.1	0.014	14.8	8.1	1.0	1	0	0	1	1	1	0	Cobalamin	biosynthesis	protein	CobT
HSBP1	PF06825.12	gi|564290380|ref|YP_008876684.1|	-	0.014	15.2	0.3	0.14	12.1	0.0	2.1	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4200	PF13863.6	gi|564290380|ref|YP_008876684.1|	-	0.032	14.6	0.7	0.21	12.0	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
JIP_LZII	PF16471.5	gi|564290380|ref|YP_008876684.1|	-	0.036	14.2	1.1	0.036	14.2	1.1	1.5	2	0	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|564290380|ref|YP_008876684.1|	-	0.04	14.0	0.2	0.064	13.4	0.2	1.4	1	0	0	1	1	1	0	bZIP	transcription	factor
CCDC53	PF10152.9	gi|564290380|ref|YP_008876684.1|	-	0.05	14.0	4.2	0.066	13.6	4.2	1.1	1	0	0	1	1	1	0	Subunit	CCDC53	of	WASH	complex
PKcGMP_CC	PF16808.5	gi|564290380|ref|YP_008876684.1|	-	0.051	13.4	2.9	5.8	6.8	0.4	2.4	1	1	1	2	2	2	0	Coiled-coil	N-terminus	of	cGMP-dependent	protein	kinase
Bcr-Abl_Oligo	PF09036.10	gi|564290380|ref|YP_008876684.1|	-	0.081	12.9	0.4	0.16	12.0	0.4	1.5	1	1	0	1	1	1	0	Bcr-Abl	oncoprotein	oligomerisation	domain
GatB_N	PF02934.15	gi|564290381|ref|YP_008876685.1|	-	6.6e-97	324.2	0.1	1.2e-96	323.3	0.0	1.4	2	0	0	2	2	2	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.18	gi|564290381|ref|YP_008876685.1|	-	3.8e-39	133.9	0.0	5.8e-39	133.3	0.0	1.3	1	0	0	1	1	1	1	GatB	domain
Tox-HDC	PF15656.6	gi|564290381|ref|YP_008876685.1|	-	0.13	12.4	0.1	16	5.7	0.0	2.7	3	0	0	3	3	3	0	Toxin	with	a	H,	D/N	and	C	signature
DUF3784	PF12650.7	gi|564290383|ref|YP_008876687.1|	-	0.13	12.5	0.3	0.13	12.5	0.3	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3784)
COX7a	PF02238.15	gi|564290383|ref|YP_008876687.1|	-	0.32	11.4	1.7	4.1	7.9	0.1	2.6	2	0	0	2	2	2	0	Cytochrome	c	oxidase	subunit	VII
ATP_synt_H	PF05493.13	gi|564290383|ref|YP_008876687.1|	-	0.78	10.3	4.7	0.27	11.7	1.5	1.8	2	0	0	2	2	2	0	ATP	synthase	subunit	H
Topoisom_bac	PF01131.20	gi|564290384|ref|YP_008876688.1|	-	2.4e-125	418.8	0.0	3.2e-125	418.4	0.0	1.2	1	0	0	1	1	1	1	DNA	topoisomerase
zf-C4_Topoisom	PF01396.19	gi|564290384|ref|YP_008876688.1|	-	1e-19	70.0	3.6	4.1e-14	52.1	2.1	4.1	5	0	0	5	5	5	2	Topoisomerase	DNA	binding	C4	zinc	finger
Toprim	PF01751.22	gi|564290384|ref|YP_008876688.1|	-	4.8e-18	65.3	0.2	1.3e-17	63.9	0.1	1.9	2	0	0	2	2	2	1	Toprim	domain
HHH_5	PF14520.6	gi|564290384|ref|YP_008876688.1|	-	6.5e-10	39.5	1.3	6.5e-09	36.3	0.1	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Cdd1	PF11731.8	gi|564290384|ref|YP_008876688.1|	-	0.0024	18.0	0.0	0.0073	16.5	0.0	1.8	1	0	0	1	1	1	1	Pathogenicity	locus
DNA_pol_lambd_f	PF10391.9	gi|564290384|ref|YP_008876688.1|	-	0.0088	15.8	0.1	0.067	13.0	0.1	2.6	2	1	0	2	2	2	1	Fingers	domain	of	DNA	polymerase	lambda
HHH	PF00633.23	gi|564290384|ref|YP_008876688.1|	-	0.034	14.0	0.0	0.14	12.1	0.0	2.1	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
Erp_C	PF06780.11	gi|564290384|ref|YP_008876688.1|	-	0.12	12.4	0.2	0.36	10.8	0.0	1.9	2	0	0	2	2	2	0	Erp	protein	C-terminus
Lar_restr_allev	PF14354.6	gi|564290384|ref|YP_008876688.1|	-	0.26	11.7	13.9	0.31	11.5	4.8	3.4	2	1	1	3	3	3	0	Restriction	alleviation	protein	Lar
DUF1451	PF07295.11	gi|564290384|ref|YP_008876688.1|	-	3	7.9	10.5	20	5.2	2.2	3.6	2	1	0	2	2	2	0	Zinc-ribbon	containing	domain
Zn-ribbon_8	PF09723.10	gi|564290384|ref|YP_008876688.1|	-	4.5	7.5	14.5	7.3	6.8	0.1	4.2	3	1	1	4	4	4	0	Zinc	ribbon	domain
zf-TFIIB	PF13453.6	gi|564290384|ref|YP_008876688.1|	-	5.5	6.4	7.8	27	4.2	1.1	3.6	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
TF_Zn_Ribbon	PF08271.12	gi|564290384|ref|YP_008876688.1|	-	6.4	6.4	9.7	4.4	6.9	0.0	3.7	3	1	0	3	3	3	0	TFIIB	zinc-binding
Rad50_zn_hook	PF04423.14	gi|564290385|ref|YP_008876689.1|	-	0.0055	16.5	1.8	0.54	10.1	0.2	2.1	2	0	0	2	2	2	1	Rad50	zinc	hook	motif
Prok-RING_4	PF14447.6	gi|564290385|ref|YP_008876689.1|	-	0.0082	16.0	0.4	0.87	9.5	0.1	2.1	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	4
Anti-TRAP	PF15777.5	gi|564290385|ref|YP_008876689.1|	-	0.0088	16.0	0.7	0.25	11.4	0.8	2.1	1	1	1	2	2	2	1	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Sgf11	PF08209.11	gi|564290385|ref|YP_008876689.1|	-	0.02	14.4	2.2	0.22	11.1	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-LSD1	PF06943.12	gi|564290385|ref|YP_008876689.1|	-	0.022	14.6	0.7	1.8	8.5	0.1	2.2	2	0	0	2	2	2	0	LSD1	zinc	finger
zf-H2C2_2	PF13465.6	gi|564290385|ref|YP_008876689.1|	-	0.027	14.9	0.1	6.3	7.4	0.0	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
TRAF6_Z2	PF18048.1	gi|564290385|ref|YP_008876689.1|	-	0.035	14.2	3.9	2.6	8.2	0.2	2.2	2	0	0	2	2	2	0	TNF	receptor-associated	factor	6	zinc	finger	2
zinc_ribbon_9	PF14369.6	gi|564290385|ref|YP_008876689.1|	-	0.042	14.1	1.2	0.54	10.6	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon
zf-WRNIP1_ubi	PF18279.1	gi|564290385|ref|YP_008876689.1|	-	0.068	13.8	3.8	5.1	8.0	0.2	2.3	2	0	0	2	2	2	0	Werner	helicase-interacting	protein	1	ubiquitin-binding	domain
DUF1178	PF06676.11	gi|564290385|ref|YP_008876689.1|	-	0.079	13.4	2.1	2.4	8.5	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1178)
zf-Di19	PF05605.12	gi|564290385|ref|YP_008876689.1|	-	0.1	12.9	3.7	3.5	8.0	0.2	2.1	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C6H2	PF15801.5	gi|564290385|ref|YP_008876689.1|	-	0.14	12.5	0.2	16	5.9	0.0	2.1	2	0	0	2	2	2	0	zf-MYND-like	zinc	finger,	mRNA-binding
Zn-C2H2_12	PF18112.1	gi|564290385|ref|YP_008876689.1|	-	0.2	12.1	5.6	5	7.7	1.1	2.2	2	0	0	2	2	2	0	Autophagy	receptor	zinc	finger-C2H2	domain
zf-Nse	PF11789.8	gi|564290385|ref|YP_008876689.1|	-	0.21	11.4	3.5	6.4	6.7	3.5	2.1	1	1	0	1	1	1	0	Zinc-finger	of	the	MIZ	type	in	Nse	subunit
zf-C2H2_jaz	PF12171.8	gi|564290385|ref|YP_008876689.1|	-	0.28	11.5	0.2	34	4.9	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
Prok-RING_1	PF14446.6	gi|564290385|ref|YP_008876689.1|	-	0.41	10.6	3.9	7	6.7	1.5	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
Prim_Zn_Ribbon	PF08273.12	gi|564290385|ref|YP_008876689.1|	-	0.52	10.6	3.4	3.8	7.9	0.3	2.3	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
UPF0547	PF10571.9	gi|564290385|ref|YP_008876689.1|	-	1.2	9.3	8.8	1.7	8.8	2.4	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Rieske	PF00355.26	gi|564290386|ref|YP_008876690.1|	-	4e-08	33.1	0.1	5.4e-08	32.7	0.1	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Bacteriocin_IIc	PF10439.9	gi|564290387|ref|YP_008876691.1|	-	4.4	7.5	10.5	2	8.6	1.2	2.6	3	0	0	3	3	3	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
PcrB	PF01884.17	gi|564290388|ref|YP_008876692.1|	-	5.7e-57	192.8	2.0	7.1e-57	192.4	2.0	1.0	1	0	0	1	1	1	1	PcrB	family
Sun2_CC2	PF18580.1	gi|564290388|ref|YP_008876692.1|	-	0.16	12.3	2.6	0.33	11.2	0.3	2.2	2	0	0	2	2	2	0	SUN2	coiled	coil	domain	2
AA_permease_2	PF13520.6	gi|564290389|ref|YP_008876693.1|	-	1.9e-45	155.5	39.1	2.4e-45	155.2	39.1	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564290389|ref|YP_008876693.1|	-	2.8e-43	148.2	38.5	3.9e-43	147.7	38.5	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|564290389|ref|YP_008876693.1|	-	4.9e-05	23.9	1.8	6.4e-05	23.5	0.5	1.9	2	0	0	2	2	2	1	Universal	stress	protein	family
AA_permease_C	PF13906.6	gi|564290389|ref|YP_008876693.1|	-	0.017	15.2	4.9	0.017	15.2	4.9	2.7	2	0	0	2	2	2	0	C-terminus	of	AA_permease
TrkA_N	PF02254.18	gi|564290390|ref|YP_008876694.1|	-	1.8e-10	41.1	0.2	2.4e-10	40.7	0.2	1.1	1	0	0	1	1	1	1	TrkA-N	domain
HTH_24	PF13412.6	gi|564290391|ref|YP_008876695.1|	-	2.1e-12	46.4	0.3	3.1e-12	45.9	0.3	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564290391|ref|YP_008876695.1|	-	8e-12	44.8	1.4	1.5e-11	43.9	1.4	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564290391|ref|YP_008876695.1|	-	3.2e-10	39.8	0.0	6.4e-10	38.8	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564290391|ref|YP_008876695.1|	-	7.2e-07	29.2	0.0	1.4e-06	28.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564290391|ref|YP_008876695.1|	-	5.8e-06	26.0	0.1	1.7e-05	24.5	0.1	1.7	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|564290391|ref|YP_008876695.1|	-	3.3e-05	24.0	0.0	6.3e-05	23.1	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|564290391|ref|YP_008876695.1|	-	0.00017	21.4	0.0	0.00028	20.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|564290391|ref|YP_008876695.1|	-	0.00032	21.0	0.1	0.00077	19.8	0.0	1.6	2	0	0	2	2	1	1	Transcriptional	regulator
MarR_2	PF12802.7	gi|564290391|ref|YP_008876695.1|	-	0.00032	20.5	0.1	0.00046	20.0	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|564290391|ref|YP_008876695.1|	-	0.00043	20.0	0.1	0.00079	19.1	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.6	gi|564290391|ref|YP_008876695.1|	-	0.00046	20.3	0.8	0.0022	18.1	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|564290391|ref|YP_008876695.1|	-	0.002	17.7	0.2	0.0037	16.9	0.2	1.3	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_30	PF13556.6	gi|564290391|ref|YP_008876695.1|	-	0.0021	17.8	0.1	0.004	16.9	0.1	1.5	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|564290391|ref|YP_008876695.1|	-	0.005	16.8	0.0	0.0079	16.2	0.0	1.2	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
MarR	PF01047.22	gi|564290391|ref|YP_008876695.1|	-	0.0058	16.5	0.0	0.0092	15.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
Sigma70_r4	PF04545.16	gi|564290391|ref|YP_008876695.1|	-	0.0068	15.9	0.0	0.014	14.9	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|564290391|ref|YP_008876695.1|	-	0.0095	15.9	0.0	0.028	14.4	0.0	1.7	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
FUR	PF01475.19	gi|564290391|ref|YP_008876695.1|	-	0.011	15.9	0.1	0.017	15.2	0.1	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
HTH_36	PF13730.6	gi|564290391|ref|YP_008876695.1|	-	0.012	15.6	0.0	0.016	15.1	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|564290391|ref|YP_008876695.1|	-	0.013	15.0	0.1	0.022	14.3	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_Tnp_ISL3	PF13542.6	gi|564290391|ref|YP_008876695.1|	-	0.022	14.1	0.2	0.043	13.2	0.2	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_27	PF13463.6	gi|564290391|ref|YP_008876695.1|	-	0.023	15.2	0.1	0.05	14.1	0.1	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|564290391|ref|YP_008876695.1|	-	0.032	13.9	0.2	0.071	12.8	0.2	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_10	PF04967.12	gi|564290391|ref|YP_008876695.1|	-	0.033	14.0	0.2	0.056	13.2	0.2	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_12	PF08461.10	gi|564290391|ref|YP_008876695.1|	-	0.038	13.9	0.2	0.1	12.6	0.1	1.8	2	0	0	2	2	1	0	Ribonuclease	R	winged-helix	domain
HTH_Tnp_Tc3_2	PF01498.18	gi|564290391|ref|YP_008876695.1|	-	0.038	14.2	0.1	0.061	13.6	0.1	1.3	1	0	0	1	1	1	0	Transposase
HrcA_DNA-bdg	PF03444.15	gi|564290391|ref|YP_008876695.1|	-	0.057	13.1	0.0	0.11	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
TrmB	PF01978.19	gi|564290391|ref|YP_008876695.1|	-	0.062	13.2	0.0	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r3	PF04539.16	gi|564290391|ref|YP_008876695.1|	-	0.074	13.2	0.0	0.15	12.1	0.0	1.6	1	0	0	1	1	1	0	Sigma-70	region	3
HTH_1	PF00126.27	gi|564290391|ref|YP_008876695.1|	-	0.076	13.0	0.2	0.13	12.2	0.2	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_CodY	PF08222.11	gi|564290391|ref|YP_008876695.1|	-	0.082	12.5	0.6	0.16	11.5	0.2	1.6	2	0	0	2	2	1	0	CodY	helix-turn-helix	domain
RPA_C	PF08784.11	gi|564290391|ref|YP_008876695.1|	-	0.093	13.4	0.1	0.41	11.3	0.0	1.9	2	0	0	2	2	2	0	Replication	protein	A	C	terminal
PaaX	PF07848.12	gi|564290391|ref|YP_008876695.1|	-	0.1	12.8	0.0	0.18	12.0	0.0	1.6	1	0	0	1	1	1	0	PaaX-like	protein
Put_DNA-bind_N	PF06971.13	gi|564290391|ref|YP_008876695.1|	-	0.14	12.2	0.1	0.27	11.3	0.1	1.5	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_38	PF13936.6	gi|564290391|ref|YP_008876695.1|	-	0.2	11.5	0.3	0.2	11.5	0.3	1.7	2	0	0	2	2	1	0	Helix-turn-helix	domain
ABC_tran	PF00005.27	gi|564290393|ref|YP_008876697.1|	-	4.8e-26	91.9	0.0	6.5e-26	91.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290393|ref|YP_008876697.1|	-	4.5e-13	49.7	0.2	4.5e-09	36.5	0.1	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RsgA_GTPase	PF03193.16	gi|564290393|ref|YP_008876697.1|	-	0.0061	16.5	0.0	0.0094	15.9	0.0	1.2	1	0	0	1	1	1	1	RsgA	GTPase
AAA_16	PF13191.6	gi|564290393|ref|YP_008876697.1|	-	0.01	16.2	0.0	0.018	15.4	0.0	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564290393|ref|YP_008876697.1|	-	0.045	13.5	0.0	0.082	12.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564290393|ref|YP_008876697.1|	-	0.061	13.8	0.0	0.091	13.3	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.7	gi|564290393|ref|YP_008876697.1|	-	0.24	10.3	0.0	0.33	9.8	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
ABC2_membrane_2	PF12679.7	gi|564290394|ref|YP_008876698.1|	-	2.1e-26	92.9	9.7	5.7e-25	88.2	9.7	2.1	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.7	gi|564290394|ref|YP_008876698.1|	-	1.5e-08	34.2	9.3	1.8e-08	33.9	9.3	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.7	gi|564290394|ref|YP_008876698.1|	-	4.2e-07	30.1	9.7	2.1e-06	27.8	8.7	2.0	2	0	0	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|564290394|ref|YP_008876698.1|	-	0.00011	21.7	14.3	0.00018	21.0	14.3	1.3	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.6	gi|564290394|ref|YP_008876698.1|	-	0.00074	19.1	6.2	0.0012	18.5	6.2	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
tRNA-synt_2	PF00152.20	gi|564290395|ref|YP_008876699.1|	-	1.7e-84	283.6	0.0	2e-84	283.4	0.0	1.0	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.25	gi|564290395|ref|YP_008876699.1|	-	2.9e-15	56.0	0.4	4.8e-15	55.3	0.4	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.20	gi|564290395|ref|YP_008876699.1|	-	0.0076	15.8	0.2	0.073	12.5	0.0	2.4	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
BOF	PF04076.13	gi|564290395|ref|YP_008876699.1|	-	0.047	13.7	0.0	0.16	12.0	0.1	1.9	2	0	0	2	2	2	0	Bacterial	OB	fold	(BOF)	protein
Med30	PF11315.8	gi|564290395|ref|YP_008876699.1|	-	0.16	12.1	0.0	0.46	10.7	0.0	1.7	2	0	0	2	2	2	0	Mediator	complex	subunit	30
Bac_rhodopsin	PF01036.18	gi|564290397|ref|YP_008876701.1|	-	7.4e-56	189.2	20.8	9.1e-56	188.9	20.8	1.1	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
Lig_chan	PF00060.26	gi|564290397|ref|YP_008876701.1|	-	4.9	7.0	5.5	0.51	10.2	0.7	1.8	2	0	0	2	2	2	0	Ligand-gated	ion	channel
Aldo_ket_red	PF00248.21	gi|564290398|ref|YP_008876702.1|	-	1.5e-47	162.2	0.0	3.1e-45	154.6	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
HTH_20	PF12840.7	gi|564290399|ref|YP_008876703.1|	-	0.053	13.6	0.0	0.2	11.7	0.0	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
AA_kinase	PF00696.28	gi|564290399|ref|YP_008876703.1|	-	0.11	12.1	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	Amino	acid	kinase	family
PAS_3	PF08447.12	gi|564290400|ref|YP_008876704.1|	-	7.6e-37	125.5	0.1	1.6e-25	89.2	0.4	3.4	3	0	0	3	3	3	2	PAS	fold
BAT	PF15915.5	gi|564290400|ref|YP_008876704.1|	-	1e-26	93.7	9.1	1e-26	93.7	9.1	3.6	4	1	0	4	4	4	1	GAF	and	HTH_10	associated	domain
PAS_4	PF08448.10	gi|564290400|ref|YP_008876704.1|	-	8.9e-23	80.6	5.6	6.4e-14	52.1	0.0	4.5	4	1	0	4	4	4	3	PAS	fold
PAS_9	PF13426.7	gi|564290400|ref|YP_008876704.1|	-	2.9e-21	75.6	0.0	3.9e-13	49.5	0.0	3.6	3	1	1	4	4	4	2	PAS	domain
HTH_10	PF04967.12	gi|564290400|ref|YP_008876704.1|	-	2.9e-19	68.6	0.1	7.1e-19	67.4	0.1	1.7	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS	PF00989.25	gi|564290400|ref|YP_008876704.1|	-	2.6e-16	59.6	0.0	2.2e-13	50.2	0.0	3.0	2	0	0	2	2	2	2	PAS	fold
GAF_2	PF13185.6	gi|564290400|ref|YP_008876704.1|	-	5.1e-13	49.5	2.5	6.9e-13	49.1	0.1	2.5	3	0	0	3	3	2	1	GAF	domain
PAS_11	PF14598.6	gi|564290400|ref|YP_008876704.1|	-	1.7e-05	24.9	0.0	6.6e-05	23.0	0.0	2.0	2	0	0	2	2	2	1	PAS	domain
GAF	PF01590.26	gi|564290400|ref|YP_008876704.1|	-	0.00026	21.6	0.2	0.0012	19.5	0.0	2.2	2	0	0	2	2	2	1	GAF	domain
PAS_8	PF13188.7	gi|564290400|ref|YP_008876704.1|	-	0.0054	16.7	0.0	0.026	14.5	0.0	2.2	1	0	0	1	1	1	1	PAS	domain
Sigma70_r4	PF04545.16	gi|564290400|ref|YP_008876704.1|	-	0.029	13.9	0.7	0.061	12.8	0.1	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
PAS_10	PF13596.6	gi|564290400|ref|YP_008876704.1|	-	0.098	13.3	0.0	11	6.7	0.0	3.4	4	0	0	4	4	3	0	PAS	domain
DUF2218	PF09981.9	gi|564290400|ref|YP_008876704.1|	-	0.11	13.0	0.8	0.5	10.8	0.1	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2218)
HTH_24	PF13412.6	gi|564290400|ref|YP_008876704.1|	-	0.11	12.1	0.1	0.3	10.7	0.1	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
NYN_YacP	PF05991.11	gi|564290400|ref|YP_008876704.1|	-	0.22	11.5	1.1	0.64	9.9	1.1	1.7	1	0	0	1	1	1	0	YacP-like	NYN	domain
RTP1_C2	PF10304.9	gi|564290400|ref|YP_008876704.1|	-	0.36	10.6	4.4	13	5.6	0.2	3.6	3	0	0	3	3	3	0	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	2
DUF2238	PF09997.9	gi|564290401|ref|YP_008876705.1|	-	0.00094	19.0	3.2	0.02	14.7	3.2	2.1	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2238)
YdjM	PF04307.14	gi|564290403|ref|YP_008876707.1|	-	1.9e-05	24.1	15.6	0.00014	21.3	14.7	2.4	1	1	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
Pcc1	PF09341.10	gi|564290404|ref|YP_008876708.1|	-	5e-09	36.2	0.1	5.2e-09	36.1	0.1	1.0	1	0	0	1	1	1	1	Transcription	factor	Pcc1
DNA_RNApol_7kD	PF03604.13	gi|564290405|ref|YP_008876709.1|	-	1.8e-10	40.3	6.3	2.1e-10	40.1	6.3	1.1	1	0	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.6	gi|564290405|ref|YP_008876709.1|	-	6.3e-05	22.2	0.4	0.0046	16.3	0.1	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.19	gi|564290405|ref|YP_008876709.1|	-	0.0011	19.0	0.3	0.0011	19.0	0.3	1.1	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf_UBZ	PF18439.1	gi|564290405|ref|YP_008876709.1|	-	0.0016	18.0	1.6	0.33	10.6	0.3	2.1	1	1	1	2	2	2	2	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS1595	PF12760.7	gi|564290405|ref|YP_008876709.1|	-	0.0052	16.7	4.6	0.1	12.6	0.1	2.1	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-CHCC	PF10276.9	gi|564290405|ref|YP_008876709.1|	-	0.0052	16.8	0.4	0.0092	16.0	0.4	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
A2L_zn_ribbon	PF08792.10	gi|564290405|ref|YP_008876709.1|	-	0.0054	16.4	0.8	0.25	11.1	2.2	2.0	1	1	1	2	2	2	2	A2L	zinc	ribbon	domain
DZR	PF12773.7	gi|564290405|ref|YP_008876709.1|	-	0.009	16.0	0.9	0.019	14.9	0.9	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
YacG	PF03884.14	gi|564290405|ref|YP_008876709.1|	-	0.011	15.5	0.3	0.23	11.2	0.0	2.0	2	0	0	2	2	2	0	DNA	gyrase	inhibitor	YacG
zinc_ribbon_2	PF13240.6	gi|564290405|ref|YP_008876709.1|	-	0.013	15.2	2.1	0.17	11.6	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564290405|ref|YP_008876709.1|	-	0.019	15.0	0.2	0.023	14.7	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
RNHCP	PF12647.7	gi|564290405|ref|YP_008876709.1|	-	0.021	14.8	0.2	0.023	14.7	0.2	1.1	1	0	0	1	1	1	0	RNHCP	domain
Sgf11	PF08209.11	gi|564290405|ref|YP_008876709.1|	-	0.027	14.0	1.9	1.4	8.5	0.2	2.1	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Lar_restr_allev	PF14354.6	gi|564290405|ref|YP_008876709.1|	-	0.032	14.6	0.6	0.27	11.6	0.0	1.9	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
Cys_rich_CPXG	PF14255.6	gi|564290405|ref|YP_008876709.1|	-	0.041	13.8	0.7	0.13	12.1	0.1	1.9	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
DUF951	PF06107.11	gi|564290405|ref|YP_008876709.1|	-	0.05	13.5	1.0	3.8	7.5	0.1	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
zf-Di19	PF05605.12	gi|564290405|ref|YP_008876709.1|	-	0.057	13.7	0.3	0.63	10.4	0.0	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
TF_Zn_Ribbon	PF08271.12	gi|564290405|ref|YP_008876709.1|	-	0.06	12.9	4.0	0.11	12.1	4.0	1.5	1	1	0	1	1	1	0	TFIIB	zinc-binding
Anti-TRAP	PF15777.5	gi|564290405|ref|YP_008876709.1|	-	0.076	13.0	0.1	0.094	12.7	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
Mu-like_Com	PF10122.9	gi|564290405|ref|YP_008876709.1|	-	0.12	11.9	2.6	0.47	10.0	2.6	1.8	1	1	0	1	1	1	0	Mu-like	prophage	protein	Com
OrfB_Zn_ribbon	PF07282.11	gi|564290405|ref|YP_008876709.1|	-	0.12	12.3	2.5	0.21	11.6	2.3	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DUF3268	PF11672.8	gi|564290405|ref|YP_008876709.1|	-	0.14	12.5	1.1	0.5	10.7	0.1	1.9	1	1	1	2	2	2	0	zinc-finger-containing	domain
Thioredoxin_4	PF13462.6	gi|564290405|ref|YP_008876709.1|	-	0.16	12.1	1.8	0.2	11.8	0.0	1.8	1	1	1	2	2	2	0	Thioredoxin
CpXC	PF14353.6	gi|564290405|ref|YP_008876709.1|	-	0.17	12.0	1.3	0.55	10.3	0.3	1.9	1	1	1	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.10	gi|564290405|ref|YP_008876709.1|	-	0.17	12.0	4.0	0.43	10.7	4.0	1.6	1	1	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.6	gi|564290405|ref|YP_008876709.1|	-	0.37	10.8	5.5	15	5.6	5.5	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Ribosomal_L37ae	PF01780.19	gi|564290406|ref|YP_008876710.1|	-	3.1e-31	107.3	1.2	3.9e-31	107.0	1.2	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|564290406|ref|YP_008876710.1|	-	0.0012	18.8	2.1	0.0023	17.9	1.1	1.9	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-H2C2_2	PF13465.6	gi|564290406|ref|YP_008876710.1|	-	0.0029	17.9	0.7	0.12	12.8	0.1	2.3	2	0	0	2	2	2	1	Zinc-finger	double	domain
DUF1610	PF07754.11	gi|564290406|ref|YP_008876710.1|	-	0.017	15.1	1.3	0.038	14.0	1.3	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
Rep_fac-A_C	PF08646.10	gi|564290406|ref|YP_008876710.1|	-	0.019	14.7	0.3	0.024	14.4	0.3	1.1	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
Zn-ribbon_8	PF09723.10	gi|564290406|ref|YP_008876710.1|	-	0.034	14.2	0.9	0.16	12.1	0.2	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|564290406|ref|YP_008876710.1|	-	0.11	11.9	2.4	0.44	10.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564290406|ref|YP_008876710.1|	-	0.13	12.2	0.8	0.23	11.4	0.8	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.12	gi|564290406|ref|YP_008876710.1|	-	0.41	11.0	8.2	2	8.7	8.2	2.1	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zf-C2H2	PF00096.26	gi|564290406|ref|YP_008876710.1|	-	1.9	9.1	3.9	6.8	7.4	0.5	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DoxX_2	PF13564.6	gi|564290407|ref|YP_008876711.1|	-	0.11	12.7	11.7	0.2	11.8	11.6	1.5	1	1	0	1	1	1	0	DoxX-like	family
TMEM43	PF07787.12	gi|564290407|ref|YP_008876711.1|	-	3	7.1	4.6	3.5	6.9	4.6	1.1	1	0	0	1	1	1	0	Transmembrane	protein	43
DUF2103	PF09876.9	gi|564290409|ref|YP_008876713.1|	-	2.4e-39	133.2	0.3	5.1e-39	132.2	0.3	1.5	1	0	0	1	1	1	1	Predicted	metal-binding	protein	(DUF2103)
Candida_ALS	PF05792.13	gi|564290409|ref|YP_008876713.1|	-	0.062	13.9	4.6	0.14	12.8	4.6	1.6	1	0	0	1	1	1	0	Candida	agglutinin-like	(ALS)
acVLRF1	PF18859.1	gi|564290409|ref|YP_008876713.1|	-	0.11	12.8	10.6	0.11	12.8	1.1	2.8	2	2	1	3	3	3	0	Actinobacteria/chloroflexi	VLRF1	release	factor
Auto_anti-p27	PF06677.12	gi|564290409|ref|YP_008876713.1|	-	1.2	9.3	2.8	2	8.6	2.8	1.3	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
GHMP_kinases_N	PF00288.26	gi|564290410|ref|YP_008876714.1|	-	3.2e-08	33.7	4.8	3.2e-08	33.7	4.8	2.4	2	1	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.13	gi|564290410|ref|YP_008876714.1|	-	0.0028	18.0	0.8	0.024	15.0	0.0	2.7	3	0	0	3	3	3	1	GHMP	kinases	C	terminal
DUF2505	PF10698.9	gi|564290410|ref|YP_008876714.1|	-	0.081	13.0	0.6	0.14	12.2	0.6	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2505)
UPF0175	PF03683.13	gi|564290411|ref|YP_008876715.1|	-	7.5e-10	38.4	1.8	1e-09	37.9	1.8	1.3	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RHH_1	PF01402.21	gi|564290411|ref|YP_008876715.1|	-	0.019	14.9	1.2	0.019	14.9	1.2	2.4	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
HTH_psq	PF05225.16	gi|564290411|ref|YP_008876715.1|	-	0.12	12.1	1.5	0.44	10.3	0.5	2.0	1	1	1	2	2	2	0	helix-turn-helix,	Psq	domain
NYN_YacP	PF05991.11	gi|564290412|ref|YP_008876716.1|	-	0.023	14.6	0.1	0.031	14.2	0.1	1.2	1	0	0	1	1	1	0	YacP-like	NYN	domain
PIN_4	PF13638.6	gi|564290412|ref|YP_008876716.1|	-	0.028	14.7	0.3	1.1	9.6	0.3	2.1	1	1	0	1	1	1	0	PIN	domain
Prefoldin_2	PF01920.20	gi|564290413|ref|YP_008876717.1|	-	2.6e-27	94.9	23.3	2.9e-27	94.7	23.3	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
CLZ	PF16526.5	gi|564290413|ref|YP_008876717.1|	-	0.00037	20.8	4.1	0.00037	20.8	4.1	2.3	2	0	0	2	2	2	1	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
FlaC_arch	PF05377.11	gi|564290413|ref|YP_008876717.1|	-	0.00039	20.7	5.9	0.00039	20.7	5.9	2.5	2	1	0	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
XhlA	PF10779.9	gi|564290413|ref|YP_008876717.1|	-	0.0025	18.0	1.4	0.0025	18.0	1.4	2.3	2	1	0	2	2	2	1	Haemolysin	XhlA
ERM	PF00769.19	gi|564290413|ref|YP_008876717.1|	-	0.0031	17.4	18.1	0.005	16.7	18.1	1.2	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
DUF5082	PF16888.5	gi|564290413|ref|YP_008876717.1|	-	0.0037	17.5	11.9	0.0049	17.1	11.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5082)
DUF3584	PF12128.8	gi|564290413|ref|YP_008876717.1|	-	0.006	14.2	11.8	0.0073	13.9	11.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
ALIX_LYPXL_bnd	PF13949.6	gi|564290413|ref|YP_008876717.1|	-	0.0064	15.8	9.8	0.008	15.5	9.8	1.1	1	0	0	1	1	1	1	ALIX	V-shaped	domain	binding	to	HIV
TPR_MLP1_2	PF07926.12	gi|564290413|ref|YP_008876717.1|	-	0.012	15.7	23.9	0.02	14.9	23.9	1.3	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
SlyX	PF04102.12	gi|564290413|ref|YP_008876717.1|	-	0.017	15.8	0.1	0.017	15.8	0.1	2.3	2	0	0	2	2	2	0	SlyX
Leu_zip	PF15294.6	gi|564290413|ref|YP_008876717.1|	-	0.017	14.7	13.1	0.019	14.5	13.1	1.0	1	0	0	1	1	1	0	Leucine	zipper
BLOC1_2	PF10046.9	gi|564290413|ref|YP_008876717.1|	-	0.017	15.4	12.7	0.18	12.1	1.5	2.2	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF4988	PF16378.5	gi|564290413|ref|YP_008876717.1|	-	0.026	14.2	0.9	0.026	14.2	0.9	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function
FlgN	PF05130.12	gi|564290413|ref|YP_008876717.1|	-	0.047	14.2	10.5	0.065	13.7	10.5	1.2	1	0	0	1	1	1	0	FlgN	protein
DUF724	PF05266.14	gi|564290413|ref|YP_008876717.1|	-	0.048	13.5	13.5	0.057	13.2	13.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
bZIP_1	PF00170.21	gi|564290413|ref|YP_008876717.1|	-	0.054	13.6	3.5	0.054	13.6	3.5	2.2	2	0	0	2	2	2	0	bZIP	transcription	factor
Prefoldin	PF02996.17	gi|564290413|ref|YP_008876717.1|	-	0.061	13.2	19.6	2.3	8.1	19.6	2.5	1	1	0	1	1	1	0	Prefoldin	subunit
EzrA	PF06160.12	gi|564290413|ref|YP_008876717.1|	-	0.088	11.0	16.2	0.13	10.4	16.2	1.2	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
BRI3BP	PF14965.6	gi|564290413|ref|YP_008876717.1|	-	0.1	12.1	0.3	0.16	11.5	0.3	1.3	1	0	0	1	1	1	0	Negative	regulator	of	p53/TP53
RasGAP_C	PF03836.15	gi|564290413|ref|YP_008876717.1|	-	0.15	12.2	7.3	3	8.0	0.3	2.1	2	0	0	2	2	2	0	RasGAP	C-terminus
GCN5L1	PF06320.13	gi|564290413|ref|YP_008876717.1|	-	0.18	11.9	14.0	0.31	11.2	3.7	2.1	1	1	0	2	2	2	0	GCN5-like	protein	1	(GCN5L1)
Baculo_PEP_C	PF04513.12	gi|564290413|ref|YP_008876717.1|	-	0.2	11.7	9.9	0.34	10.9	9.9	1.4	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
WXG100	PF06013.12	gi|564290413|ref|YP_008876717.1|	-	0.24	11.7	15.1	1.7	9.0	5.9	2.9	2	1	0	2	2	2	0	Proteins	of	100	residues	with	WXG
Spc24	PF08286.11	gi|564290413|ref|YP_008876717.1|	-	0.25	11.6	20.4	0.4	10.9	5.5	2.1	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
CENP-F_leu_zip	PF10473.9	gi|564290413|ref|YP_008876717.1|	-	0.27	11.3	23.6	2.1	8.3	8.1	2.1	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Cep57_CLD	PF14073.6	gi|564290413|ref|YP_008876717.1|	-	0.27	11.2	17.7	1.3	9.0	6.3	2.1	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	Cep57
TraF_2	PF13729.6	gi|564290413|ref|YP_008876717.1|	-	0.29	10.5	9.6	0.86	8.9	4.7	2.0	1	1	1	2	2	2	0	F	plasmid	transfer	operon,	TraF,	protein
ZapB	PF06005.12	gi|564290413|ref|YP_008876717.1|	-	0.3	11.6	19.8	0.43	11.1	6.4	2.2	2	0	0	2	2	2	0	Cell	division	protein	ZapB
Laminin_I	PF06008.14	gi|564290413|ref|YP_008876717.1|	-	0.39	10.4	19.1	0.56	9.9	4.4	2.1	1	1	1	2	2	2	0	Laminin	Domain	I
Seryl_tRNA_N	PF02403.22	gi|564290413|ref|YP_008876717.1|	-	0.41	10.9	16.4	0.42	10.9	3.0	2.1	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
ING	PF12998.7	gi|564290413|ref|YP_008876717.1|	-	0.49	11.0	10.2	1.4	9.5	9.7	2.1	1	1	0	1	1	1	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
PRP1_N	PF06424.12	gi|564290413|ref|YP_008876717.1|	-	0.54	10.6	10.9	0.77	10.1	10.9	1.2	1	0	0	1	1	1	0	PRP1	splicing	factor,	N-terminal
Sigma70_ner	PF04546.13	gi|564290413|ref|YP_008876717.1|	-	0.57	10.0	16.5	0.29	11.0	4.3	2.1	1	1	1	2	2	2	0	Sigma-70,	non-essential	region
MutS_III	PF05192.18	gi|564290413|ref|YP_008876717.1|	-	0.61	10.3	6.1	0.76	10.0	6.1	1.1	1	0	0	1	1	1	0	MutS	domain	III
FAM184	PF15665.5	gi|564290413|ref|YP_008876717.1|	-	0.62	9.8	20.2	0.85	9.4	20.2	1.1	1	0	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
Exonuc_VII_L	PF02601.15	gi|564290413|ref|YP_008876717.1|	-	0.67	9.5	8.0	0.85	9.1	8.0	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
FUSC	PF04632.12	gi|564290413|ref|YP_008876717.1|	-	0.8	8.2	5.1	1	7.8	5.1	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF1664	PF07889.12	gi|564290413|ref|YP_008876717.1|	-	0.86	9.6	12.4	0.57	10.2	2.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Laminin_II	PF06009.12	gi|564290413|ref|YP_008876717.1|	-	0.86	9.6	11.9	1.6	8.8	11.9	1.5	1	1	0	1	1	1	0	Laminin	Domain	II
Sec8_exocyst	PF04048.14	gi|564290413|ref|YP_008876717.1|	-	0.93	9.4	8.9	0.41	10.5	3.6	2.0	1	1	1	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
DUF1826	PF08856.11	gi|564290413|ref|YP_008876717.1|	-	1.4	8.8	5.1	1.4	8.8	4.1	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1826)
DUF4164	PF13747.6	gi|564290413|ref|YP_008876717.1|	-	1.5	9.1	13.6	0.1	12.9	1.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
JIP_LZII	PF16471.5	gi|564290413|ref|YP_008876717.1|	-	1.6	8.9	13.3	1	9.5	4.5	2.4	2	0	0	2	2	2	0	JNK-interacting	protein	leucine	zipper	II
NPV_P10	PF05531.12	gi|564290413|ref|YP_008876717.1|	-	1.7	9.2	10.6	1.8	9.1	1.4	2.3	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
HemX	PF04375.14	gi|564290413|ref|YP_008876717.1|	-	1.7	7.8	22.3	20	4.3	22.3	1.9	1	1	0	1	1	1	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
APG6_N	PF17675.1	gi|564290413|ref|YP_008876717.1|	-	1.8	9.1	31.7	2.4	8.7	13.1	2.1	1	1	1	2	2	2	0	Apg6	coiled-coil	region
Fzo_mitofusin	PF04799.13	gi|564290413|ref|YP_008876717.1|	-	1.8	8.1	14.1	2.4	7.7	3.7	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
Bac_GDH	PF05088.12	gi|564290413|ref|YP_008876717.1|	-	2	5.8	7.0	2.4	5.5	7.0	1.0	1	0	0	1	1	1	0	Bacterial	NAD-glutamate	dehydrogenase
eIF3_N	PF09440.10	gi|564290413|ref|YP_008876717.1|	-	2	8.9	15.6	0.3	11.5	4.4	2.0	1	1	1	2	2	2	0	eIF3	subunit	6	N	terminal	domain
DUF4407	PF14362.6	gi|564290413|ref|YP_008876717.1|	-	2.1	7.7	14.0	0.41	10.0	0.6	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Tropomyosin_1	PF12718.7	gi|564290413|ref|YP_008876717.1|	-	2.3	8.3	24.9	7	6.8	24.3	1.8	1	1	0	1	1	1	0	Tropomyosin	like
Syntaxin-6_N	PF09177.11	gi|564290413|ref|YP_008876717.1|	-	2.4	8.7	13.8	1.9e+02	2.7	14.2	2.3	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Spc7	PF08317.11	gi|564290413|ref|YP_008876717.1|	-	2.6	6.8	21.9	11	4.7	22.0	1.7	1	1	0	1	1	1	0	Spc7	kinetochore	protein
Fib_alpha	PF08702.10	gi|564290413|ref|YP_008876717.1|	-	2.8	8.1	12.8	28	4.9	12.8	2.0	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Com_YlbF	PF06133.11	gi|564290413|ref|YP_008876717.1|	-	2.9	8.6	23.3	0.33	11.6	9.7	2.1	1	1	1	2	2	2	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
LMBR1	PF04791.16	gi|564290413|ref|YP_008876717.1|	-	2.9	6.7	7.5	3.6	6.4	7.5	1.0	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
Vps51	PF08700.11	gi|564290413|ref|YP_008876717.1|	-	2.9	8.0	12.6	0.45	10.6	1.2	2.2	2	0	0	2	2	2	0	Vps51/Vps67
DUF3376	PF11856.8	gi|564290413|ref|YP_008876717.1|	-	3.6	6.5	8.2	4.4	6.2	8.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3376)
GIT_CC	PF16559.5	gi|564290413|ref|YP_008876717.1|	-	3.7	7.5	17.3	0.083	12.8	3.0	2.5	2	1	1	3	3	3	0	GIT	coiled-coil	Rho	guanine	nucleotide	exchange	factor
DUF3450	PF11932.8	gi|564290413|ref|YP_008876717.1|	-	4.1	6.6	24.0	22	4.2	24.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
V-SNARE	PF05008.15	gi|564290413|ref|YP_008876717.1|	-	4.1	7.9	18.0	4	7.9	6.0	2.3	2	0	0	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
DUF4446	PF14584.6	gi|564290413|ref|YP_008876717.1|	-	4.1	7.4	11.8	0.69	9.9	2.5	2.1	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Sec34	PF04136.15	gi|564290413|ref|YP_008876717.1|	-	4.5	7.2	14.9	1.5	8.7	2.6	2.1	1	1	1	2	2	2	0	Sec34-like	family
Occludin_ELL	PF07303.13	gi|564290413|ref|YP_008876717.1|	-	4.6	8.0	12.1	6.4	7.6	2.1	2.1	1	1	1	2	2	2	0	Occludin	homology	domain
OmpH	PF03938.14	gi|564290413|ref|YP_008876717.1|	-	5.3	7.4	28.8	2	8.7	8.4	2.1	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
DUF4795	PF16043.5	gi|564290413|ref|YP_008876717.1|	-	6.3	6.3	19.6	37	3.8	19.6	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4795)
TssO	PF17561.2	gi|564290413|ref|YP_008876717.1|	-	6.3	6.9	11.0	0.46	10.6	2.0	2.1	1	1	1	2	2	2	0	Type	VI	secretion	system,	TssO
DUF4200	PF13863.6	gi|564290413|ref|YP_008876717.1|	-	6.4	7.2	24.5	2.3	8.6	9.4	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF2408	PF10303.9	gi|564290413|ref|YP_008876717.1|	-	6.4	7.3	11.7	17	6.0	11.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
HMMR_N	PF15905.5	gi|564290413|ref|YP_008876717.1|	-	7	6.0	23.7	13	5.1	23.7	1.4	1	1	0	1	1	1	0	Hyaluronan	mediated	motility	receptor	N-terminal
Herpes_UL6	PF01763.16	gi|564290413|ref|YP_008876717.1|	-	7.2	5.0	13.9	3.1	6.2	2.8	2.0	1	1	1	2	2	2	0	Herpesvirus	UL6	like
FapA	PF03961.13	gi|564290413|ref|YP_008876717.1|	-	8.3	4.9	11.2	16	3.9	11.2	1.4	1	1	0	1	1	1	0	Flagellar	Assembly	Protein	A
DUF4657	PF15552.6	gi|564290413|ref|YP_008876717.1|	-	8.4	5.9	11.9	9.9	5.6	11.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4657)
AAA_13	PF13166.6	gi|564290413|ref|YP_008876717.1|	-	9.2	4.8	14.2	19	3.7	11.3	1.6	1	1	0	1	1	1	0	AAA	domain
DHR10	PF18595.1	gi|564290413|ref|YP_008876717.1|	-	9.6	6.3	26.6	1.3	9.1	9.4	2.1	1	1	1	2	2	2	0	Designed	helical	repeat	protein	10	domain
TMF_TATA_bd	PF12325.8	gi|564290413|ref|YP_008876717.1|	-	9.8	6.4	22.2	2e+02	2.2	22.3	2.1	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
GAS	PF13851.6	gi|564290413|ref|YP_008876717.1|	-	9.9	5.4	22.3	45	3.3	22.3	1.7	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF3194	PF11419.8	gi|564290414|ref|YP_008876718.1|	-	0.0011	19.3	4.5	0.0014	18.9	4.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3194)
MucB_RseB_C	PF17188.4	gi|564290414|ref|YP_008876718.1|	-	0.099	12.9	0.1	0.11	12.8	0.1	1.2	1	0	0	1	1	1	0	MucB/RseB	C-terminal	domain
Presenilin	PF01080.17	gi|564290416|ref|YP_008876720.1|	-	0.52	9.0	4.2	0.67	8.7	4.2	1.1	1	0	0	1	1	1	0	Presenilin
PepSY_TM	PF03929.16	gi|564290416|ref|YP_008876720.1|	-	0.62	9.7	3.2	0.96	9.0	3.2	1.5	1	1	0	1	1	1	0	PepSY-associated	TM	region
CPSF100_C	PF13299.6	gi|564290416|ref|YP_008876720.1|	-	2.4	8.3	8.4	13	6.0	4.2	2.1	2	0	0	2	2	2	0	Cleavage	and	polyadenylation	factor	2	C-terminal
DNase-RNase	PF02577.14	gi|564290417|ref|YP_008876721.1|	-	5.5e-38	129.5	0.0	6e-38	129.4	0.0	1.0	1	0	0	1	1	1	1	Bifunctional	nuclease
HAD_2	PF13419.6	gi|564290418|ref|YP_008876722.1|	-	1.2e-19	71.1	0.0	1.5e-19	70.8	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564290418|ref|YP_008876722.1|	-	7e-10	38.8	0.1	1.4e-09	37.8	0.1	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|564290418|ref|YP_008876722.1|	-	1.2e-07	32.2	0.0	1.6e-06	28.6	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564290418|ref|YP_008876722.1|	-	0.0016	18.9	0.9	0.0032	17.9	0.9	1.6	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
BAT	PF15915.5	gi|564290419|ref|YP_008876723.1|	-	2.5e-30	105.4	7.7	2.5e-30	105.4	7.7	3.5	4	0	0	4	4	4	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|564290419|ref|YP_008876723.1|	-	1e-19	71.2	6.2	7.4e-16	58.7	0.5	2.7	2	0	0	2	2	2	2	GAF	domain
HTH_10	PF04967.12	gi|564290419|ref|YP_008876723.1|	-	2e-19	69.1	0.0	4.1e-19	68.1	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_9	PF13426.7	gi|564290419|ref|YP_008876723.1|	-	3e-18	66.0	0.0	3.6e-08	33.6	0.1	2.9	2	0	0	2	2	2	2	PAS	domain
PAS	PF00989.25	gi|564290419|ref|YP_008876723.1|	-	5e-14	52.3	0.0	1.7e-08	34.5	0.1	3.0	2	0	0	2	2	2	2	PAS	fold
PAS_4	PF08448.10	gi|564290419|ref|YP_008876723.1|	-	9.4e-12	45.2	9.3	7.5e-06	26.2	0.1	4.7	4	1	0	4	4	3	2	PAS	fold
PAS_8	PF13188.7	gi|564290419|ref|YP_008876723.1|	-	1.6e-08	34.4	0.1	0.0015	18.5	0.0	2.8	2	0	0	2	2	2	2	PAS	domain
GAF_3	PF13492.6	gi|564290419|ref|YP_008876723.1|	-	3.1e-05	24.3	0.6	0.0018	18.6	0.0	2.6	2	0	0	2	2	2	1	GAF	domain
Sigma70_r4	PF04545.16	gi|564290419|ref|YP_008876723.1|	-	0.00043	19.8	0.1	0.0014	18.1	0.1	1.9	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|564290419|ref|YP_008876723.1|	-	0.0014	18.5	0.0	0.0037	17.1	0.0	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GAF	PF01590.26	gi|564290419|ref|YP_008876723.1|	-	0.0062	17.2	0.1	0.034	14.8	0.0	2.3	2	0	0	2	2	2	1	GAF	domain
GerE	PF00196.19	gi|564290419|ref|YP_008876723.1|	-	0.0098	15.4	0.0	0.062	12.9	0.0	2.2	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
PAS_3	PF08447.12	gi|564290419|ref|YP_008876723.1|	-	0.026	14.8	0.0	0.14	12.4	0.0	2.3	2	0	0	2	2	1	0	PAS	fold
HTH_24	PF13412.6	gi|564290419|ref|YP_008876723.1|	-	0.026	14.1	0.0	0.081	12.5	0.0	1.8	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MAT1	PF06391.13	gi|564290419|ref|YP_008876723.1|	-	0.068	13.0	4.5	0.13	12.1	0.1	2.4	2	0	0	2	2	2	0	CDK-activating	kinase	assembly	factor	MAT1
L31	PF09784.9	gi|564290419|ref|YP_008876723.1|	-	0.23	11.9	0.6	18	5.8	0.5	2.6	2	0	0	2	2	2	0	Mitochondrial	ribosomal	protein	L31
DUF4078	PF13300.6	gi|564290419|ref|YP_008876723.1|	-	0.46	10.8	8.6	0.1	13.0	3.1	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4078)
PAS_7	PF12860.7	gi|564290419|ref|YP_008876723.1|	-	0.6	10.3	3.3	13	6.0	0.0	3.5	4	0	0	4	4	3	0	PAS	fold
HalOD1	PF18545.1	gi|564290420|ref|YP_008876724.1|	-	2e-22	79.2	0.1	2.4e-22	79.0	0.1	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Terpene_synth_C	PF03936.16	gi|564290421|ref|YP_008876725.1|	-	0.03	13.7	0.0	0.09	12.1	0.0	1.7	1	1	0	1	1	1	0	Terpene	synthase	family,	metal	binding	domain
HMGL-like	PF00682.19	gi|564290422|ref|YP_008876726.1|	-	4.9e-65	219.7	0.3	1e-64	218.7	0.3	1.5	1	0	0	1	1	1	1	HMGL-like
LeuA_dimer	PF08502.10	gi|564290422|ref|YP_008876726.1|	-	2.7e-30	105.0	3.1	6.5e-30	103.8	3.1	1.7	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
F_bP_aldolase	PF01116.20	gi|564290422|ref|YP_008876726.1|	-	0.013	14.9	0.2	0.095	12.2	0.0	2.1	2	0	0	2	2	2	0	Fructose-bisphosphate	aldolase	class-II
GDPD_2	PF13653.6	gi|564290422|ref|YP_008876726.1|	-	2.2	8.9	4.9	50	4.5	0.1	3.8	4	0	0	4	4	4	0	Glycerophosphoryl	diester	phosphodiesterase	family
DUF192	PF02643.15	gi|564290423|ref|YP_008876727.1|	-	2e-22	79.1	0.0	2.3e-22	78.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
RecA_dep_nuc	PF16786.5	gi|564290424|ref|YP_008876728.1|	-	0.046	13.9	0.5	0.077	13.1	0.5	1.4	1	0	0	1	1	1	0	Recombination	enhancement,	RecA-dependent	nuclease
DUF2387	PF09526.10	gi|564290424|ref|YP_008876728.1|	-	0.058	13.5	0.2	0.14	12.3	0.2	1.8	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
HNH	PF01844.23	gi|564290424|ref|YP_008876728.1|	-	0.058	13.6	2.1	0.13	12.4	2.1	1.6	1	0	0	1	1	1	0	HNH	endonuclease
HisKA_4TM	PF16926.5	gi|564290425|ref|YP_008876729.1|	-	4.7e-10	39.3	2.5	5.7e-10	39.0	1.4	1.7	2	0	0	2	2	2	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|564290425|ref|YP_008876729.1|	-	6.5e-06	26.6	0.0	1.4e-05	25.5	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_5	PF14501.6	gi|564290425|ref|YP_008876729.1|	-	1.3e-05	25.0	0.0	2.3e-05	24.2	0.0	1.4	1	0	0	1	1	1	1	GHKL	domain
HisKA	PF00512.25	gi|564290425|ref|YP_008876729.1|	-	0.0035	17.4	0.3	0.0064	16.5	0.3	1.4	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
DPBB_1	PF03330.18	gi|564290425|ref|YP_008876729.1|	-	0.13	12.5	0.1	0.26	11.6	0.1	1.4	1	0	0	1	1	1	0	Lytic	transglycolase
GATase	PF00117.28	gi|564290426|ref|YP_008876730.1|	-	4.8e-36	124.3	0.0	5.4e-36	124.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|564290426|ref|YP_008876730.1|	-	1.1e-14	54.7	1.7	7.6e-13	48.7	0.3	2.9	1	1	1	2	2	2	1	Peptidase	C26
GATase_3	PF07685.14	gi|564290426|ref|YP_008876730.1|	-	0.15	11.7	0.6	2.3	7.8	0.6	2.1	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
DUF2070	PF09843.9	gi|564290427|ref|YP_008876731.1|	-	1e-208	694.2	0.0	1.2e-208	694.0	0.0	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
DUF3087	PF11286.8	gi|564290427|ref|YP_008876731.1|	-	1.3	8.5	9.3	0.16	11.4	3.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3087)
PsaM	PF07465.13	gi|564290427|ref|YP_008876731.1|	-	1.6	8.5	12.0	3.3	7.5	0.6	3.7	3	0	0	3	3	3	0	Photosystem	I	protein	M	(PsaM)
AAA_3	PF07726.11	gi|564290428|ref|YP_008876732.1|	-	8.6e-66	219.7	0.1	1.4e-65	219.0	0.1	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|564290428|ref|YP_008876732.1|	-	1.2e-19	69.9	1.6	2.5e-19	68.9	1.6	1.6	1	0	0	1	1	1	1	AAA	lid	domain
AAA_5	PF07728.14	gi|564290428|ref|YP_008876732.1|	-	1.4e-15	57.5	0.0	5.6e-15	55.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|564290428|ref|YP_008876732.1|	-	3.8e-07	30.6	0.0	1.6e-06	28.6	0.0	2.1	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.26	gi|564290428|ref|YP_008876732.1|	-	8.9e-05	22.2	0.0	0.00064	19.5	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|564290428|ref|YP_008876732.1|	-	0.001	18.9	0.0	0.018	14.8	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Mg_chelatase	PF01078.21	gi|564290428|ref|YP_008876732.1|	-	0.0011	18.3	0.1	1.6	8.1	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.23	gi|564290428|ref|YP_008876732.1|	-	0.0059	15.7	0.0	0.01	15.0	0.0	1.4	1	0	0	1	1	1	1	MCM	P-loop	domain
DUF3071	PF11268.8	gi|564290428|ref|YP_008876732.1|	-	0.023	14.8	0.5	0.054	13.6	0.5	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3071)
AAA_2	PF07724.14	gi|564290428|ref|YP_008876732.1|	-	0.065	13.3	0.0	0.34	11.0	0.0	2.1	2	1	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
GtrA	PF04138.14	gi|564290429|ref|YP_008876733.1|	-	3.9e-21	75.5	5.5	4.5e-21	75.3	5.5	1.0	1	0	0	1	1	1	1	GtrA-like	protein
Sulfatase	PF00884.23	gi|564290430|ref|YP_008876734.1|	-	2.9e-34	118.9	0.0	3.8e-34	118.5	0.0	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564290430|ref|YP_008876734.1|	-	6.3e-08	32.6	0.2	3.3e-05	23.7	0.1	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF4976	PF16347.5	gi|564290430|ref|YP_008876734.1|	-	0.0097	16.2	0.0	0.018	15.3	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4976)
DUF1501	PF07394.12	gi|564290430|ref|YP_008876734.1|	-	0.024	13.7	0.1	0.043	12.9	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1501)
Acetyltransf_10	PF13673.7	gi|564290431|ref|YP_008876735.1|	-	1e-11	44.8	0.1	1.4e-11	44.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564290431|ref|YP_008876735.1|	-	1.7e-11	44.4	0.0	1.9e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564290431|ref|YP_008876735.1|	-	6e-08	33.0	0.0	7.5e-08	32.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564290431|ref|YP_008876735.1|	-	7.1e-08	32.3	0.0	1.1e-07	31.7	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|564290431|ref|YP_008876735.1|	-	0.0047	17.1	0.0	0.0066	16.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564290431|ref|YP_008876735.1|	-	0.0048	17.0	0.1	0.01	15.9	0.1	1.6	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
AHJR-like	PF18743.1	gi|564290431|ref|YP_008876735.1|	-	0.098	12.2	0.1	0.21	11.2	0.1	1.5	1	0	0	1	1	1	0	REase_AHJR-like
ABC1	PF03109.16	gi|564290432|ref|YP_008876736.1|	-	1.9e-27	95.8	0.0	4.5e-27	94.6	0.0	1.6	1	0	0	1	1	1	1	ABC1	family
Pkinase	PF00069.25	gi|564290432|ref|YP_008876736.1|	-	0.0013	18.2	0.0	0.0029	17.0	0.0	1.5	1	0	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.23	gi|564290432|ref|YP_008876736.1|	-	0.0045	16.9	0.3	0.022	14.7	0.2	2.2	2	1	0	2	2	2	1	Phosphotransferase	enzyme	family
HSP20	PF00011.21	gi|564290433|ref|YP_008876737.1|	-	2.4e-11	43.7	0.0	2.7e-11	43.5	0.0	1.0	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|564290433|ref|YP_008876737.1|	-	3.5e-05	23.3	0.5	0.00013	21.5	0.5	1.9	1	1	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
GvpH	PF05455.11	gi|564290433|ref|YP_008876737.1|	-	7.5e-05	22.9	0.3	0.0015	18.6	0.3	2.0	2	0	0	2	2	2	1	GvpH
CysA_C_terminal	PF17850.1	gi|564290433|ref|YP_008876737.1|	-	0.012	16.2	1.8	1.4	9.5	0.1	3.1	1	1	2	3	3	3	0	CysA	C-terminal	regulatory	domain
TubC_N	PF18563.1	gi|564290433|ref|YP_008876737.1|	-	0.2	11.7	0.0	6.8	6.8	0.0	2.3	2	0	0	2	2	2	0	TubC	N-terminal	docking	domain
GIDE	PF12483.8	gi|564290434|ref|YP_008876738.1|	-	3.7e-07	29.7	0.6	3.3e-06	26.6	0.6	2.4	1	1	0	1	1	1	1	E3	Ubiquitin	ligase
MoCF_biosynth	PF00994.24	gi|564290435|ref|YP_008876739.1|	-	4.5e-08	32.9	0.1	6.6e-08	32.3	0.1	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.15	gi|564290435|ref|YP_008876739.1|	-	9.8e-06	25.7	0.0	2.1e-05	24.6	0.0	1.6	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
MoeA_N	PF03453.17	gi|564290435|ref|YP_008876739.1|	-	0.00013	21.8	0.1	0.19	11.5	0.1	2.7	1	1	1	2	2	2	2	MoeA	N-terminal	region	(domain	I	and	II)
HAD_2	PF13419.6	gi|564290436|ref|YP_008876740.1|	-	9.5e-19	68.2	0.0	1.2e-18	67.8	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564290436|ref|YP_008876740.1|	-	3.7e-08	34.0	0.5	5.2e-08	33.5	0.5	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564290436|ref|YP_008876740.1|	-	8.2e-08	32.8	0.0	7.1e-06	26.5	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564290436|ref|YP_008876740.1|	-	0.044	13.8	0.0	0.099	12.7	0.0	1.6	1	0	0	1	1	1	0	HAD-hyrolase-like
Pterin_4a	PF01329.19	gi|564290438|ref|YP_008876742.1|	-	9.3e-26	89.8	0.0	1e-25	89.7	0.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
IF-2	PF11987.8	gi|564290438|ref|YP_008876742.1|	-	0.027	14.6	0.0	0.04	14.0	0.0	1.2	1	0	0	1	1	1	0	Translation-initiation	factor	2
GlutR_N	PF05201.15	gi|564290439|ref|YP_008876743.1|	-	7.3e-34	116.6	0.9	1.1e-33	116.1	0.1	1.7	2	0	0	2	2	2	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.20	gi|564290439|ref|YP_008876743.1|	-	3.1e-25	88.8	1.5	4.6e-25	88.3	0.1	1.9	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
GlutR_dimer	PF00745.20	gi|564290439|ref|YP_008876743.1|	-	2e-20	73.0	1.6	4.2e-20	72.0	1.6	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
Glu_dehyd_C	PF16912.5	gi|564290439|ref|YP_008876743.1|	-	8.3e-07	28.7	2.0	8.3e-07	28.7	2.0	1.7	2	0	0	2	2	2	1	Glucose	dehydrogenase	C-terminus
NAD_binding_2	PF03446.15	gi|564290439|ref|YP_008876743.1|	-	0.00033	20.8	2.9	0.00087	19.5	0.1	2.5	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
zf-C4H2	PF10146.9	gi|564290439|ref|YP_008876743.1|	-	0.0022	18.4	0.2	0.0044	17.3	0.2	1.5	1	0	0	1	1	1	1	Zinc	finger-containing	protein
DUF4476	PF14771.6	gi|564290439|ref|YP_008876743.1|	-	0.0081	16.4	0.2	0.016	15.5	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4476)
Sacchrp_dh_NADP	PF03435.18	gi|564290439|ref|YP_008876743.1|	-	0.019	15.2	0.5	0.019	15.2	0.5	2.6	2	1	0	3	3	3	0	Saccharopine	dehydrogenase	NADP	binding	domain
DNA_gyraseB	PF00204.25	gi|564290439|ref|YP_008876743.1|	-	0.08	12.4	1.0	0.18	11.2	1.0	1.6	1	0	0	1	1	1	0	DNA	gyrase	B
TrkA_N	PF02254.18	gi|564290439|ref|YP_008876743.1|	-	1.1	9.6	6.7	0.59	10.4	1.3	2.8	2	0	0	2	2	2	0	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|564290439|ref|YP_008876743.1|	-	3.3	8.2	5.1	0.53	10.8	0.3	2.1	3	0	0	3	3	3	0	Putative	NAD(P)-binding
NAD_binding_7	PF13241.6	gi|564290440|ref|YP_008876744.1|	-	1.5e-23	83.2	0.1	2.2e-23	82.7	0.1	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Sirohm_synth_M	PF14824.6	gi|564290440|ref|YP_008876744.1|	-	0.00012	21.5	0.0	0.00019	20.8	0.0	1.4	1	0	0	1	1	1	1	Sirohaem	biosynthesis	protein	central
Oxidored_nitro	PF00148.19	gi|564290440|ref|YP_008876744.1|	-	0.011	14.5	0.0	0.014	14.2	0.0	1.1	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
CysG_dimeriser	PF10414.9	gi|564290440|ref|YP_008876744.1|	-	0.28	10.9	3.5	0.15	11.8	0.5	2.2	2	0	0	2	2	2	0	Sirohaem	synthase	dimerisation	region
AsnC_trans_reg2	PF17805.1	gi|564290441|ref|YP_008876745.1|	-	2.4e-50	168.6	0.2	5e-25	87.5	0.0	2.3	2	0	0	2	2	2	2	AsnC-like	ligand	binding	domain
DZR	PF12773.7	gi|564290442|ref|YP_008876746.1|	-	0.0062	16.5	1.0	0.0087	16.1	1.0	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_15	PF17032.5	gi|564290442|ref|YP_008876746.1|	-	0.0066	17.2	0.0	0.0071	17.1	0.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
zinc_ribbon_2	PF13240.6	gi|564290442|ref|YP_008876746.1|	-	0.041	13.6	2.7	0.057	13.1	2.7	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|564290442|ref|YP_008876746.1|	-	0.089	12.2	1.6	0.14	11.6	1.6	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
CSD	PF00313.22	gi|564290444|ref|YP_008876748.1|	-	8e-21	73.7	0.1	8.9e-21	73.5	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|564290444|ref|YP_008876748.1|	-	0.013	15.3	0.0	0.015	15.1	0.0	1.1	1	0	0	1	1	1	0	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|564290444|ref|YP_008876748.1|	-	0.017	15.1	1.7	0.025	14.5	1.7	1.4	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|564290444|ref|YP_008876748.1|	-	0.018	14.7	2.5	0.028	14.1	2.5	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CSD	PF00313.22	gi|564290445|ref|YP_008876749.1|	-	1.7e-21	75.8	0.1	1.9e-21	75.7	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|564290445|ref|YP_008876749.1|	-	0.0019	18.0	0.0	0.0021	17.9	0.0	1.1	1	0	0	1	1	1	1	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|564290445|ref|YP_008876749.1|	-	0.023	14.6	3.4	0.051	13.5	3.4	1.6	1	1	0	1	1	1	0	S1-like
CusF_Ec	PF11604.8	gi|564290445|ref|YP_008876749.1|	-	0.043	13.8	0.0	0.052	13.5	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
OB_RNB	PF08206.11	gi|564290445|ref|YP_008876749.1|	-	0.054	13.2	2.6	0.058	13.1	2.6	1.4	1	1	0	1	1	1	0	Ribonuclease	B	OB	domain
Prenyltransf	PF01255.19	gi|564290446|ref|YP_008876750.1|	-	2.2e-67	226.9	0.0	2.7e-67	226.6	0.0	1.1	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
Prenyltransf	PF01255.19	gi|564290447|ref|YP_008876751.1|	-	1.4e-25	90.1	0.0	4.2e-25	88.6	0.0	1.7	2	0	0	2	2	2	1	Putative	undecaprenyl	diphosphate	synthase
SbcD_C	PF12320.8	gi|564290447|ref|YP_008876751.1|	-	0.094	13.0	0.1	0.14	12.5	0.1	1.5	1	0	0	1	1	1	0	Type	5	capsule	protein	repressor	C-terminal	domain
DUF92	PF01940.16	gi|564290448|ref|YP_008876752.1|	-	1.2e-49	168.9	14.6	1.2e-49	168.9	14.6	3.3	3	2	0	3	3	3	1	Integral	membrane	protein	DUF92
Acetyltransf_1	PF00583.25	gi|564290449|ref|YP_008876753.1|	-	6.1e-14	52.3	0.0	6.9e-14	52.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564290449|ref|YP_008876753.1|	-	1e-09	38.4	0.0	1.2e-09	38.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564290449|ref|YP_008876753.1|	-	1.2e-07	32.0	0.0	1.6e-07	31.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564290449|ref|YP_008876753.1|	-	4.1e-05	23.5	0.0	7e-05	22.7	0.0	1.4	1	1	1	2	2	2	1	FR47-like	protein
Acetyltransf_9	PF13527.7	gi|564290449|ref|YP_008876753.1|	-	0.00042	20.4	0.1	0.0007	19.7	0.0	1.4	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Toprim_4	PF13662.6	gi|564290450|ref|YP_008876754.1|	-	3e-11	43.7	0.7	2.2e-10	40.8	0.2	2.4	2	0	0	2	2	2	1	Toprim	domain
Toprim_2	PF13155.6	gi|564290450|ref|YP_008876754.1|	-	1.3e-05	25.6	0.0	3.2e-05	24.3	0.0	1.7	1	0	0	1	1	1	1	Toprim-like
Toprim	PF01751.22	gi|564290450|ref|YP_008876754.1|	-	0.063	13.5	0.4	0.87	9.8	0.4	2.6	1	1	0	1	1	1	0	Toprim	domain
ADH_zinc_N	PF00107.26	gi|564290450|ref|YP_008876754.1|	-	0.46	10.5	3.5	9.3	6.3	0.1	2.9	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
AP_endonuc_2	PF01261.24	gi|564290451|ref|YP_008876755.1|	-	8.1e-14	51.6	1.2	8.5e-13	48.2	0.9	2.3	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
tRNA_bind	PF01588.20	gi|564290452|ref|YP_008876756.1|	-	1.4e-19	70.0	0.0	1.6e-19	69.8	0.0	1.0	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
DUF3311	PF11755.8	gi|564290453|ref|YP_008876757.1|	-	5.1e-15	55.2	16.9	5.6e-15	55.0	16.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
GTA_holin_3TM	PF11351.8	gi|564290453|ref|YP_008876757.1|	-	5.3	7.6	9.1	6.4	7.3	9.1	1.1	1	0	0	1	1	1	0	Holin	of	3TMs,	for	gene-transfer	release
SSF	PF00474.17	gi|564290454|ref|YP_008876758.1|	-	2.4e-39	135.4	27.1	3.5e-39	134.8	27.1	1.2	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF2892	PF11127.8	gi|564290455|ref|YP_008876759.1|	-	9.4e-10	38.4	0.0	1.2e-09	38.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
DUF3567	PF12091.8	gi|564290456|ref|YP_008876760.1|	-	0.035	14.2	0.1	0.1	12.7	0.1	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3567)
tRNA-synt_1	PF00133.22	gi|564290457|ref|YP_008876761.1|	-	6.4e-128	427.6	0.2	1.4e-126	423.2	0.2	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|564290457|ref|YP_008876761.1|	-	4.2e-36	124.2	0.0	1e-35	122.9	0.0	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|564290457|ref|YP_008876761.1|	-	3.1e-20	72.3	0.1	1.2e-09	37.4	0.0	3.4	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.6	gi|564290457|ref|YP_008876761.1|	-	3.6e-06	26.6	0.0	8.6e-06	25.4	0.0	1.6	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.18	gi|564290457|ref|YP_008876761.1|	-	8.4e-05	21.6	0.0	0.0027	16.7	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
DZR	PF12773.7	gi|564290457|ref|YP_008876761.1|	-	0.00068	19.6	0.3	0.022	14.8	0.1	2.4	2	0	0	2	2	2	1	Double	zinc	ribbon
tRNA-synt_1e	PF01406.19	gi|564290457|ref|YP_008876761.1|	-	0.00069	19.1	0.0	0.26	10.6	0.0	2.6	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Zn-ribbon_8	PF09723.10	gi|564290457|ref|YP_008876761.1|	-	0.0012	19.0	2.4	0.029	14.5	0.6	2.8	2	0	0	2	2	2	1	Zinc	ribbon	domain
zf-dskA_traR	PF01258.17	gi|564290457|ref|YP_008876761.1|	-	0.014	15.3	0.2	0.014	15.3	0.2	2.3	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Lar_restr_allev	PF14354.6	gi|564290457|ref|YP_008876761.1|	-	0.018	15.4	2.0	17	5.9	0.0	3.7	3	0	0	3	3	3	0	Restriction	alleviation	protein	Lar
Apolipoprotein	PF01442.18	gi|564290457|ref|YP_008876761.1|	-	0.083	12.8	0.2	0.083	12.8	0.2	2.3	3	0	0	3	3	3	0	Apolipoprotein	A1/A4/E	domain
HypA	PF01155.19	gi|564290457|ref|YP_008876761.1|	-	0.14	12.2	0.1	3.9	7.5	0.0	2.6	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-ribbon_3	PF13248.6	gi|564290457|ref|YP_008876761.1|	-	0.48	9.9	3.8	1.4	8.4	0.2	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
Bap31_Bap29_C	PF18035.1	gi|564290458|ref|YP_008876762.1|	-	0.064	13.3	0.3	0.091	12.8	0.2	1.5	1	1	0	1	1	1	0	Bap31/Bap29	cytoplasmic	coiled-coil	domain
DUF1405	PF07187.11	gi|564290459|ref|YP_008876763.1|	-	1.4e-48	164.8	12.7	1.7e-48	164.6	12.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1405)
SOR_SNZ	PF01680.17	gi|564290460|ref|YP_008876764.1|	-	1.3e-96	322.3	6.7	1.7e-96	321.9	6.7	1.1	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.14	gi|564290460|ref|YP_008876764.1|	-	1.2e-11	44.4	2.2	3.2e-06	26.7	0.1	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
OMPdecase	PF00215.24	gi|564290460|ref|YP_008876764.1|	-	0.0012	18.5	0.4	1.4	8.4	0.0	2.7	2	1	1	3	3	3	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
IGPS	PF00218.21	gi|564290460|ref|YP_008876764.1|	-	0.0048	16.1	0.1	0.27	10.4	0.0	2.3	2	1	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
NanE	PF04131.14	gi|564290460|ref|YP_008876764.1|	-	0.011	14.9	0.4	0.38	9.9	0.0	2.4	2	0	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
MS_channel	PF00924.18	gi|564290461|ref|YP_008876765.1|	-	1.9e-48	164.8	0.0	4.3e-48	163.6	0.0	1.6	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
UPF0182	PF03699.13	gi|564290461|ref|YP_008876765.1|	-	7.5	4.5	10.3	1.4	7.0	1.3	2.0	1	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0182)
DUF2150	PF09920.9	gi|564290463|ref|YP_008876767.1|	-	4.9e-72	241.9	6.7	5.6e-72	241.7	6.7	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2150)
Big_1	PF02369.16	gi|564290464|ref|YP_008876768.1|	-	1.4e-06	28.2	4.2	1.4e-06	28.2	4.2	5.3	6	0	0	6	6	6	1	Bacterial	Ig-like	domain	(group	1)
MG4	PF17789.1	gi|564290464|ref|YP_008876768.1|	-	0.0043	17.2	1.8	0.017	15.3	0.2	2.9	3	0	0	3	3	3	1	Macroglobulin	domain	MG4
Invasin_D3	PF09134.10	gi|564290464|ref|YP_008876768.1|	-	0.01	16.1	4.5	0.01	16.1	4.5	4.0	5	0	0	5	5	5	0	Invasin,	domain	3
PKD	PF00801.20	gi|564290464|ref|YP_008876768.1|	-	0.025	14.4	1.3	0.025	14.4	1.3	4.0	4	1	1	5	5	5	0	PKD	domain
DUF824	PF05688.11	gi|564290464|ref|YP_008876768.1|	-	0.1	12.5	7.7	3.7	7.4	0.1	4.6	5	0	0	5	5	5	0	Salmonella	repeat	of	unknown	function	(DUF824)
CAP	PF00188.26	gi|564290465|ref|YP_008876769.1|	-	0.00023	22.0	0.1	0.00041	21.2	0.1	1.5	1	0	0	1	1	1	1	Cysteine-rich	secretory	protein	family
CCD	PF07860.11	gi|564290466|ref|YP_008876770.1|	-	0.041	13.9	1.1	0.084	12.9	1.1	1.5	1	0	0	1	1	1	0	WisP	family	C-Terminal	Region
EBP50_C	PF09007.11	gi|564290466|ref|YP_008876770.1|	-	0.43	11.6	7.1	0.74	10.8	7.1	1.4	1	0	0	1	1	1	0	EBP50,	C-terminal
HMG_CoA_synt_N	PF01154.17	gi|564290467|ref|YP_008876771.1|	-	2.5e-26	92.6	0.0	3.7e-26	92.1	0.0	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.10	gi|564290467|ref|YP_008876771.1|	-	1.7e-15	57.4	0.0	4.1e-15	56.2	0.0	1.5	2	0	0	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
GrpB	PF04229.14	gi|564290468|ref|YP_008876772.1|	-	1.5e-47	161.7	0.0	1.7e-47	161.6	0.0	1.0	1	0	0	1	1	1	1	GrpB	protein
Glyco_transf_34	PF05637.12	gi|564290468|ref|YP_008876772.1|	-	0.095	12.4	0.0	0.13	12.0	0.0	1.1	1	0	0	1	1	1	0	galactosyl	transferase	GMA12/MNN10	family
HTH_31	PF13560.6	gi|564290469|ref|YP_008876773.1|	-	3.8e-09	36.8	0.1	2.6e-08	34.1	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_3	PF01381.22	gi|564290469|ref|YP_008876773.1|	-	2.2e-08	34.0	0.0	4.6e-08	33.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.7	gi|564290469|ref|YP_008876773.1|	-	4.9e-05	23.3	0.0	0.00021	21.3	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564290469|ref|YP_008876773.1|	-	0.026	14.4	0.0	0.059	13.3	0.0	1.6	1	0	0	1	1	1	0	MarR	family
IspD	PF01128.19	gi|564290469|ref|YP_008876773.1|	-	0.051	13.3	0.0	0.074	12.8	0.0	1.2	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Phage_CI_repr	PF07022.13	gi|564290469|ref|YP_008876773.1|	-	0.13	12.3	0.0	0.79	9.9	0.0	2.1	2	1	0	2	2	2	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|564290469|ref|YP_008876773.1|	-	0.15	12.0	0.0	0.39	10.6	0.0	1.7	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
Pilin_N	PF07790.11	gi|564290470|ref|YP_008876774.1|	-	8.1e-19	68.3	0.4	2.3e-18	66.9	0.2	1.8	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
MraZ	PF02381.18	gi|564290472|ref|YP_008876776.1|	-	0.001	19.0	1.0	0.0034	17.3	0.0	2.0	2	1	0	2	2	2	1	MraZ	protein,	putative	antitoxin-like
kleA_kleC	PF17383.2	gi|564290472|ref|YP_008876776.1|	-	0.052	13.9	0.2	0.079	13.3	0.2	1.3	1	0	0	1	1	1	0	Uncharacterized	KorC	regulated	protein	A
DUF1474	PF07342.11	gi|564290472|ref|YP_008876776.1|	-	0.069	13.7	0.0	0.082	13.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1474)
MazE_antitoxin	PF04014.18	gi|564290472|ref|YP_008876776.1|	-	0.12	12.4	0.0	0.25	11.3	0.0	1.7	1	1	0	1	1	1	0	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PIN	PF01850.21	gi|564290473|ref|YP_008876777.1|	-	5.9e-08	33.2	1.0	7.6e-08	32.9	1.0	1.2	1	0	0	1	1	1	1	PIN	domain
AAA	PF00004.29	gi|564290474|ref|YP_008876778.1|	-	7.1e-11	42.7	0.0	2.3e-10	41.0	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.12	gi|564290474|ref|YP_008876778.1|	-	2.3e-05	24.2	0.0	5.7e-05	22.9	0.0	1.6	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|564290474|ref|YP_008876778.1|	-	0.00017	22.0	0.0	0.0069	16.8	0.0	2.9	2	1	1	3	3	3	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564290474|ref|YP_008876778.1|	-	0.00042	20.6	0.0	0.23	11.7	0.0	2.9	2	1	1	3	3	3	2	AAA	domain
Rad17	PF03215.15	gi|564290474|ref|YP_008876778.1|	-	0.0041	17.1	0.0	0.0076	16.2	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_28	PF13521.6	gi|564290474|ref|YP_008876778.1|	-	0.0041	17.4	0.1	0.013	15.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|564290474|ref|YP_008876778.1|	-	0.0054	16.7	0.1	0.041	13.9	0.0	2.4	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.17	gi|564290474|ref|YP_008876778.1|	-	0.0059	16.4	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
RNA_helicase	PF00910.22	gi|564290474|ref|YP_008876778.1|	-	0.0072	16.7	0.0	0.11	12.9	0.0	2.4	2	0	0	2	2	2	1	RNA	helicase
AAA_assoc_2	PF16193.5	gi|564290474|ref|YP_008876778.1|	-	0.0079	16.5	0.2	0.026	14.9	0.2	1.9	1	0	0	1	1	1	1	AAA	C-terminal	domain
AAA_33	PF13671.6	gi|564290474|ref|YP_008876778.1|	-	0.014	15.6	0.2	0.08	13.1	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
Bac_DnaA	PF00308.18	gi|564290474|ref|YP_008876778.1|	-	0.023	14.5	0.0	0.19	11.5	0.0	2.2	2	0	0	2	2	2	0	Bacterial	dnaA	protein
IPT	PF01745.16	gi|564290474|ref|YP_008876778.1|	-	0.03	13.7	0.0	0.059	12.8	0.0	1.4	1	0	0	1	1	1	0	Isopentenyl	transferase
Zeta_toxin	PF06414.12	gi|564290474|ref|YP_008876778.1|	-	0.032	13.5	0.0	0.064	12.5	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Hydin_ADK	PF17213.3	gi|564290474|ref|YP_008876778.1|	-	0.035	14.4	0.1	0.035	14.4	0.1	2.3	2	0	0	2	2	2	0	Hydin	Adenylate	kinase-like	domain
NACHT	PF05729.12	gi|564290474|ref|YP_008876778.1|	-	0.052	13.5	0.0	0.18	11.7	0.0	1.9	2	0	0	2	2	2	0	NACHT	domain
AAA_14	PF13173.6	gi|564290474|ref|YP_008876778.1|	-	0.1	12.7	0.0	0.21	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.13	gi|564290474|ref|YP_008876778.1|	-	0.13	11.4	0.0	0.28	10.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
BPD_transp_1	PF00528.22	gi|564290475|ref|YP_008876779.1|	-	4.7e-20	72.1	8.4	4.7e-20	72.1	8.4	2.2	2	1	1	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|564290476|ref|YP_008876780.1|	-	1.1e-31	110.2	0.0	1.5e-31	109.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290476|ref|YP_008876780.1|	-	9.9e-12	45.3	0.0	3.3e-07	30.4	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564290476|ref|YP_008876780.1|	-	9e-09	35.1	0.0	8.6e-08	31.9	0.0	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564290476|ref|YP_008876780.1|	-	0.00011	22.6	0.1	0.00016	22.1	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564290476|ref|YP_008876780.1|	-	0.00021	21.1	0.0	0.00026	20.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.6	gi|564290476|ref|YP_008876780.1|	-	0.00026	20.7	0.0	0.00051	19.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|564290476|ref|YP_008876780.1|	-	0.01	16.1	0.1	0.016	15.5	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290476|ref|YP_008876780.1|	-	0.015	15.2	0.0	0.024	14.6	0.0	1.4	1	0	0	1	1	1	0	RsgA	GTPase
AAA_27	PF13514.6	gi|564290476|ref|YP_008876780.1|	-	0.044	13.4	0.0	0.076	12.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564290476|ref|YP_008876780.1|	-	0.05	14.2	0.0	0.093	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.9	gi|564290476|ref|YP_008876780.1|	-	0.05	12.4	0.0	1.5	7.6	0.0	2.2	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
S4	PF01479.25	gi|564290476|ref|YP_008876780.1|	-	0.054	13.2	0.0	0.2	11.4	0.0	1.9	2	0	0	2	2	2	0	S4	domain
ATPase_2	PF01637.18	gi|564290476|ref|YP_008876780.1|	-	0.062	13.2	0.0	0.096	12.6	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_19	PF13245.6	gi|564290476|ref|YP_008876780.1|	-	0.094	13.1	0.0	0.12	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.6	gi|564290476|ref|YP_008876780.1|	-	0.1	12.9	0.6	1.4	9.2	0.2	2.7	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
ATP_bind_1	PF03029.17	gi|564290476|ref|YP_008876780.1|	-	0.1	12.4	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_33	PF13671.6	gi|564290476|ref|YP_008876780.1|	-	0.12	12.5	0.1	0.17	12.0	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|564290476|ref|YP_008876780.1|	-	0.15	12.5	0.0	1.4	9.4	0.0	2.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|564290476|ref|YP_008876780.1|	-	0.18	12.3	0.0	0.28	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564290476|ref|YP_008876780.1|	-	0.25	11.0	0.0	2.2	7.9	0.0	1.9	1	1	0	2	2	2	0	AAA	ATPase	domain
BPD_transp_1	PF00528.22	gi|564290477|ref|YP_008876781.1|	-	7.3e-23	81.3	9.6	9.4e-23	80.9	9.6	1.2	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_3	PF00497.20	gi|564290478|ref|YP_008876782.1|	-	1.3e-56	191.6	0.1	1.5e-56	191.4	0.1	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Lig_chan-Glu_bd	PF10613.9	gi|564290478|ref|YP_008876782.1|	-	2.8e-08	33.9	0.1	3.2e-07	30.5	0.1	2.2	1	1	0	1	1	1	1	Ligated	ion	channel	L-glutamate-	and	glycine-binding	site
NMT1	PF09084.11	gi|564290478|ref|YP_008876782.1|	-	0.001	19.0	0.0	0.0038	17.2	0.0	1.8	2	0	0	2	2	2	1	NMT1/THI5	like
Phosphonate-bd	PF12974.7	gi|564290478|ref|YP_008876782.1|	-	0.014	15.0	0.1	0.018	14.7	0.1	1.2	1	0	0	1	1	1	0	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
TAT_signal	PF10518.9	gi|564290478|ref|YP_008876782.1|	-	0.09	12.7	0.5	0.2	11.6	0.5	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
COX15-CtaA	PF02628.15	gi|564290479|ref|YP_008876783.1|	-	2.3e-10	40.1	15.7	2.9e-06	26.6	6.1	2.0	1	1	1	2	2	2	2	Cytochrome	oxidase	assembly	protein
MCPsignal	PF00015.21	gi|564290480|ref|YP_008876784.1|	-	2.3e-42	144.7	53.5	1.4e-40	139.0	22.1	3.4	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
PAS	PF00989.25	gi|564290480|ref|YP_008876784.1|	-	6.2e-11	42.3	0.0	3e-10	40.1	0.0	2.3	1	0	0	1	1	1	1	PAS	fold
PAS_4	PF08448.10	gi|564290480|ref|YP_008876784.1|	-	7.1e-11	42.3	0.4	1.9e-09	37.8	0.1	3.1	2	1	0	2	2	1	1	PAS	fold
PAS_9	PF13426.7	gi|564290480|ref|YP_008876784.1|	-	2.4e-08	34.2	0.0	1e-07	32.1	0.0	2.2	1	0	0	1	1	1	1	PAS	domain
PAS_8	PF13188.7	gi|564290480|ref|YP_008876784.1|	-	1.7e-05	24.7	0.0	9e-05	22.4	0.0	2.3	1	0	0	1	1	1	1	PAS	domain
MLTR_LBD	PF17765.1	gi|564290480|ref|YP_008876784.1|	-	0.00018	21.7	0.4	0.0033	17.5	0.0	3.3	2	1	1	3	3	3	1	MmyB-like	transcription	regulator	ligand	binding	domain
DUF948	PF06103.11	gi|564290480|ref|YP_008876784.1|	-	0.0013	18.9	44.7	0.016	15.4	5.9	5.4	3	2	2	5	5	5	3	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|564290480|ref|YP_008876784.1|	-	0.003	17.6	35.0	0.014	15.5	3.4	5.0	5	1	1	6	6	4	2	Protein	of	unknown	function	(DUF1664)
PAS_3	PF08447.12	gi|564290480|ref|YP_008876784.1|	-	0.033	14.5	0.0	0.43	10.9	0.0	2.8	1	1	0	1	1	1	0	PAS	fold
TMP_2	PF06791.13	gi|564290480|ref|YP_008876784.1|	-	0.035	13.8	35.3	0.047	13.4	10.0	3.4	1	1	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
HAMP	PF00672.25	gi|564290480|ref|YP_008876784.1|	-	0.039	14.3	0.1	0.039	14.3	0.1	4.3	6	0	0	6	6	3	0	HAMP	domain
Spc7	PF08317.11	gi|564290480|ref|YP_008876784.1|	-	0.077	11.9	33.4	0.15	10.9	12.3	3.2	1	1	3	4	4	4	0	Spc7	kinetochore	protein
CheZ	PF04344.13	gi|564290480|ref|YP_008876784.1|	-	0.086	12.8	28.0	1.3	8.9	5.3	3.8	2	1	1	3	3	3	0	Chemotaxis	phosphatase,	CheZ
SF1-HH	PF16275.5	gi|564290480|ref|YP_008876784.1|	-	0.09	13.1	0.4	0.51	10.7	0.0	2.4	2	0	0	2	2	2	0	Splicing	factor	1	helix-hairpin	domain
IFT20	PF14931.6	gi|564290480|ref|YP_008876784.1|	-	0.092	12.9	20.2	0.31	11.2	0.0	4.6	3	1	1	4	4	4	0	Intraflagellar	transport	complex	B,	subunit	20
HD_2	PF12917.7	gi|564290480|ref|YP_008876784.1|	-	0.12	12.1	11.0	0.55	10.0	1.8	2.9	2	1	0	2	2	2	0	HD	containing	hydrolase-like	enzyme
DUF4279	PF14106.6	gi|564290480|ref|YP_008876784.1|	-	0.16	12.2	2.3	12	6.1	0.0	3.8	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF4279)
Baculo_PEP_C	PF04513.12	gi|564290480|ref|YP_008876784.1|	-	0.33	11.0	31.1	0.49	10.4	6.5	4.3	3	2	1	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
COMM_domain	PF07258.14	gi|564290480|ref|YP_008876784.1|	-	0.46	10.6	3.1	20	5.4	0.0	3.7	3	1	0	3	3	3	0	COMM	domain
ERM	PF00769.19	gi|564290480|ref|YP_008876784.1|	-	0.52	10.1	33.3	0.72	9.6	14.1	3.3	3	0	0	3	3	3	0	Ezrin/radixin/moesin	family
IFT57	PF10498.9	gi|564290480|ref|YP_008876784.1|	-	0.64	8.9	27.2	0.27	10.2	3.7	4.1	3	1	1	4	4	4	0	Intra-flagellar	transport	protein	57
bZIP_1	PF00170.21	gi|564290480|ref|YP_008876784.1|	-	0.73	10.0	2.1	1.3e+02	2.7	0.0	4.1	4	0	0	4	4	3	0	bZIP	transcription	factor
Sec34	PF04136.15	gi|564290480|ref|YP_008876784.1|	-	0.91	9.4	21.7	4.9	7.0	0.0	4.4	2	2	2	4	4	4	0	Sec34-like	family
Syntaxin-6_N	PF09177.11	gi|564290480|ref|YP_008876784.1|	-	1.3	9.6	31.8	1.4	9.5	0.4	5.0	4	2	1	5	5	4	0	Syntaxin	6,	N-terminal
DUF1759	PF03564.15	gi|564290480|ref|YP_008876784.1|	-	1.4	8.8	8.6	1.7	8.6	0.9	3.6	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF1759)
DUF3450	PF11932.8	gi|564290480|ref|YP_008876784.1|	-	1.7	7.9	39.6	0.04	13.2	9.7	4.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3450)
DUF745	PF05335.13	gi|564290480|ref|YP_008876784.1|	-	1.7	8.4	49.6	0.32	10.7	14.6	4.0	4	1	1	5	5	3	0	Protein	of	unknown	function	(DUF745)
SKA1	PF07160.12	gi|564290480|ref|YP_008876784.1|	-	1.7	8.5	20.1	4.5	7.0	8.3	2.7	2	1	0	2	2	2	0	Spindle	and	kinetochore-associated	protein	1
AIP3	PF03915.13	gi|564290480|ref|YP_008876784.1|	-	1.8	7.6	30.5	3.2	6.7	12.0	3.0	1	1	1	2	2	2	0	Actin	interacting	protein	3
Atg14	PF10186.9	gi|564290480|ref|YP_008876784.1|	-	1.8	7.6	10.4	7	5.6	0.2	2.3	2	0	0	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
FlgN	PF05130.12	gi|564290480|ref|YP_008876784.1|	-	2.1	8.9	25.3	0.96	10.0	5.8	4.2	2	1	2	4	4	4	0	FlgN	protein
Prominin	PF05478.11	gi|564290480|ref|YP_008876784.1|	-	3.3	5.5	19.5	0.79	7.6	4.3	2.4	1	1	0	2	2	2	0	Prominin
FUSC	PF04632.12	gi|564290480|ref|YP_008876784.1|	-	3.7	6.0	23.9	4.8	5.6	10.2	2.7	1	1	2	3	3	3	0	Fusaric	acid	resistance	protein	family
T3SSipB	PF16535.5	gi|564290480|ref|YP_008876784.1|	-	5.3	7.5	43.2	0.39	11.2	3.6	4.1	2	2	1	3	3	3	0	Type	III	cell	invasion	protein	SipB
COG2	PF06148.11	gi|564290480|ref|YP_008876784.1|	-	6.1	6.9	30.6	0.51	10.4	3.4	5.4	2	1	4	6	6	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Vps54_N	PF10475.9	gi|564290480|ref|YP_008876784.1|	-	6.4	6.0	9.5	2.8	7.1	0.2	3.0	2	1	1	3	3	3	0	Vacuolar-sorting	protein	54,	of	GARP	complex
DUF2203	PF09969.9	gi|564290480|ref|YP_008876784.1|	-	6.5	7.5	28.5	0.35	11.6	2.3	5.3	3	1	0	4	4	3	0	Uncharacterized	conserved	protein	(DUF2203)
Snapin_Pallidin	PF14712.6	gi|564290480|ref|YP_008876784.1|	-	6.8	7.2	13.9	5.4	7.5	1.4	4.2	3	1	0	3	3	3	0	Snapin/Pallidin
MscS_porin	PF12795.7	gi|564290480|ref|YP_008876784.1|	-	7	6.1	34.3	0.64	9.5	13.2	3.0	2	1	1	3	3	3	0	Mechanosensitive	ion	channel	porin	domain
TolA_bind_tri	PF16331.5	gi|564290480|ref|YP_008876784.1|	-	7.8	6.7	12.3	4.7	7.4	3.7	3.7	2	1	2	4	4	4	0	TolA	binding	protein	trimerisation
Laminin_II	PF06009.12	gi|564290480|ref|YP_008876784.1|	-	8.8	6.3	43.1	1.9	8.5	6.1	4.8	3	2	2	5	5	4	0	Laminin	Domain	II
PTA_PTB	PF01515.19	gi|564290481|ref|YP_008876785.1|	-	7.4e-95	317.9	0.0	1.1e-94	317.4	0.0	1.2	1	0	0	1	1	1	1	Phosphate	acetyl/butaryl	transferase
malic	PF00390.19	gi|564290481|ref|YP_008876785.1|	-	4.9e-31	107.9	0.3	2e-28	99.4	0.1	2.8	2	1	0	2	2	2	1	Malic	enzyme,	N-terminal	domain
Malic_M	PF03949.15	gi|564290481|ref|YP_008876785.1|	-	4.8e-22	78.5	0.3	1.3e-21	77.1	0.3	1.7	1	1	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
DUF5325	PF17259.2	gi|564290482|ref|YP_008876786.1|	-	4.7	7.2	7.8	6.2	6.8	7.8	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5325)
RVT_3	PF13456.6	gi|564290483|ref|YP_008876787.1|	-	0.00034	20.4	0.0	0.00051	19.8	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
HTH_57	PF18679.1	gi|564290484|ref|YP_008876788.1|	-	0.16	12.3	0.0	0.16	12.3	0.0	1.0	1	0	0	1	1	1	0	ThcOx	helix	turn	helix	domain
Pribosyltran	PF00156.27	gi|564290485|ref|YP_008876789.1|	-	6.6e-16	58.2	0.0	9.8e-16	57.7	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|564290485|ref|YP_008876789.1|	-	0.013	15.5	0.0	0.02	15.0	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosyl	synthetase-associated	domain
TruD	PF01142.18	gi|564290486|ref|YP_008876790.1|	-	3.9e-163	543.1	0.0	4.4e-163	542.9	0.0	1.0	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
DUF2138	PF09909.9	gi|564290486|ref|YP_008876790.1|	-	0.25	9.6	0.0	0.36	9.1	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2138)
MFS_1	PF07690.16	gi|564290487|ref|YP_008876791.1|	-	3e-11	42.9	58.8	5.9e-07	28.7	33.8	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
SCFA_trans	PF02667.14	gi|564290488|ref|YP_008876792.1|	-	3.4e-124	415.3	19.2	3.9e-124	415.1	19.2	1.0	1	0	0	1	1	1	1	Short	chain	fatty	acid	transporter
DcuC	PF03606.15	gi|564290488|ref|YP_008876792.1|	-	3e-05	22.7	9.4	3e-05	22.7	9.4	1.8	2	0	0	2	2	2	1	C4-dicarboxylate	anaerobic	carrier
ABG_transport	PF03806.13	gi|564290488|ref|YP_008876792.1|	-	0.00012	20.5	6.4	0.00012	20.5	6.4	1.6	2	0	0	2	2	2	1	AbgT	putative	transporter	family
2-Hacid_dh_C	PF02826.19	gi|564290489|ref|YP_008876793.1|	-	3e-55	186.3	0.0	6e-55	185.3	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|564290489|ref|YP_008876793.1|	-	1.6e-31	108.7	0.4	1.8e-31	108.6	0.4	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564290489|ref|YP_008876793.1|	-	0.021	15.2	0.4	0.78	10.2	0.0	2.4	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
ThiP_synth	PF10120.9	gi|564290490|ref|YP_008876794.1|	-	1.6e-52	177.4	0.7	2.7e-52	176.7	0.7	1.3	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|564290490|ref|YP_008876794.1|	-	7.7e-06	25.9	0.0	2e-05	24.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|564290490|ref|YP_008876794.1|	-	3.3e-05	24.1	1.4	0.00022	21.5	0.3	2.7	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564290490|ref|YP_008876794.1|	-	8.6e-05	22.2	0.2	0.00029	20.5	0.1	2.0	1	1	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|564290490|ref|YP_008876794.1|	-	0.00014	21.3	0.0	0.00038	19.9	0.0	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_37	PF13744.6	gi|564290490|ref|YP_008876794.1|	-	0.00042	20.2	0.0	0.00087	19.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|564290490|ref|YP_008876794.1|	-	0.0049	16.5	0.0	0.012	15.2	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|564290490|ref|YP_008876794.1|	-	0.013	15.4	0.0	0.039	13.9	0.0	1.8	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.7	gi|564290490|ref|YP_008876794.1|	-	0.014	15.3	0.0	0.06	13.2	0.0	2.2	1	0	0	1	1	1	0	MarR	family
HTH_19	PF12844.7	gi|564290490|ref|YP_008876794.1|	-	0.018	15.0	0.0	0.041	13.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|564290490|ref|YP_008876794.1|	-	0.024	14.4	0.0	0.12	12.1	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
RepB	PF07506.11	gi|564290490|ref|YP_008876794.1|	-	0.036	14.1	0.0	0.071	13.2	0.0	1.5	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
KorB	PF08535.10	gi|564290490|ref|YP_008876794.1|	-	0.051	13.6	0.0	0.12	12.5	0.0	1.6	1	0	0	1	1	1	0	KorB	domain
YdaS_antitoxin	PF15943.5	gi|564290490|ref|YP_008876794.1|	-	0.069	13.0	0.0	0.15	11.9	0.0	1.6	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_24	PF13412.6	gi|564290490|ref|YP_008876794.1|	-	0.095	12.3	0.0	0.22	11.1	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
P22_Cro	PF14549.6	gi|564290490|ref|YP_008876794.1|	-	0.098	12.5	0.1	0.3	11.0	0.1	1.8	1	0	0	1	1	1	0	DNA-binding	transcriptional	regulator	Cro
TENA_THI-4	PF03070.16	gi|564290491|ref|YP_008876795.1|	-	4.7e-46	157.2	0.8	5.8e-46	157.0	0.8	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
TENA_THI-4	PF03070.16	gi|564290492|ref|YP_008876796.1|	-	7e-24	84.8	0.0	1e-23	84.3	0.0	1.2	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
SSF	PF00474.17	gi|564290493|ref|YP_008876797.1|	-	4.7e-23	81.7	33.1	7.8e-23	81.0	33.1	1.3	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DUF997	PF06196.12	gi|564290493|ref|YP_008876797.1|	-	5.5	7.1	10.0	23	5.1	3.1	3.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF997)
DUF3742	PF12553.8	gi|564290494|ref|YP_008876798.1|	-	6	7.0	7.3	6.1	7.0	7.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3742)
Usp	PF00582.26	gi|564290495|ref|YP_008876799.1|	-	4.2e-13	50.0	0.0	4.6e-13	49.9	0.0	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Proteasome	PF00227.26	gi|564290496|ref|YP_008876800.1|	-	1.6e-45	155.0	0.2	1.8e-45	154.8	0.2	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome	PF00227.26	gi|564290497|ref|YP_008876801.1|	-	1.7e-61	207.1	0.0	2.1e-61	206.7	0.0	1.1	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.9	gi|564290497|ref|YP_008876801.1|	-	6.9e-14	51.2	0.1	1.5e-13	50.2	0.1	1.6	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
PTH2	PF01981.16	gi|564290498|ref|YP_008876802.1|	-	7.7e-39	132.6	0.0	9.1e-39	132.4	0.0	1.1	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
Yip1	PF04893.17	gi|564290499|ref|YP_008876803.1|	-	3.9e-27	95.0	9.6	4.8e-27	94.8	9.6	1.1	1	0	0	1	1	1	1	Yip1	domain
DUF3021	PF11457.8	gi|564290499|ref|YP_008876803.1|	-	5.9	7.2	7.3	3.1	8.1	3.6	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3021)
DCD	PF06559.11	gi|564290500|ref|YP_008876804.1|	-	4.2e-17	62.0	0.0	3e-14	52.6	0.0	2.1	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
dUTPase	PF00692.19	gi|564290500|ref|YP_008876804.1|	-	2.4e-14	53.1	0.0	3.3e-14	52.7	0.0	1.2	1	0	0	1	1	1	1	dUTPase
ThiP_synth	PF10120.9	gi|564290501|ref|YP_008876805.1|	-	1.6e-53	180.7	0.7	2.1e-53	180.3	0.7	1.2	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
HTH_3	PF01381.22	gi|564290501|ref|YP_008876805.1|	-	1.5e-07	31.3	0.0	3e-07	30.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|564290501|ref|YP_008876805.1|	-	1.8e-05	25.0	0.2	1.8e-05	25.0	0.2	2.4	3	1	0	3	3	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|564290501|ref|YP_008876805.1|	-	2.1e-05	24.5	0.0	4.6e-05	23.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.6	gi|564290501|ref|YP_008876805.1|	-	7.4e-05	22.6	0.0	0.00015	21.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564290501|ref|YP_008876805.1|	-	0.0001	22.0	0.0	0.00026	20.7	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|564290501|ref|YP_008876805.1|	-	0.00016	21.1	0.0	0.0006	19.3	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_26	PF13443.6	gi|564290501|ref|YP_008876805.1|	-	0.00028	21.3	0.0	0.00053	20.4	0.0	1.5	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_24	PF13412.6	gi|564290501|ref|YP_008876805.1|	-	0.00035	20.1	0.2	0.0011	18.5	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564290501|ref|YP_008876805.1|	-	0.00089	19.1	0.0	0.0038	17.1	0.0	2.1	1	0	0	1	1	1	1	MarR	family
PALP	PF00291.25	gi|564290501|ref|YP_008876805.1|	-	0.0036	16.8	0.4	0.0069	15.8	0.4	1.4	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Sigma70_r4_2	PF08281.12	gi|564290501|ref|YP_008876805.1|	-	0.009	15.7	0.1	0.037	13.7	0.0	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_8	PF02954.19	gi|564290501|ref|YP_008876805.1|	-	0.012	15.4	0.1	0.026	14.3	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_5	PF01022.20	gi|564290501|ref|YP_008876805.1|	-	0.012	15.4	0.0	0.033	14.1	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_17	PF12728.7	gi|564290501|ref|YP_008876805.1|	-	0.014	15.6	0.0	0.03	14.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|564290501|ref|YP_008876805.1|	-	0.014	15.4	2.7	0.17	12.0	0.0	3.7	4	1	1	5	5	3	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|564290501|ref|YP_008876805.1|	-	0.014	15.2	0.0	0.036	13.9	0.0	1.6	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_38	PF13936.6	gi|564290501|ref|YP_008876805.1|	-	0.019	14.7	0.0	0.051	13.3	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_1	PF00126.27	gi|564290501|ref|YP_008876805.1|	-	0.034	14.1	0.0	0.13	12.2	0.0	2.0	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
P22_Cro	PF14549.6	gi|564290501|ref|YP_008876805.1|	-	0.039	13.8	0.4	0.12	12.2	0.0	2.0	2	0	0	2	2	1	0	DNA-binding	transcriptional	regulator	Cro
DUF1670	PF07900.11	gi|564290501|ref|YP_008876805.1|	-	0.06	12.7	0.0	0.095	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1670)
HTH_Tnp_ISL3	PF13542.6	gi|564290501|ref|YP_008876805.1|	-	0.06	12.8	0.1	0.36	10.3	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_IclR	PF09339.10	gi|564290501|ref|YP_008876805.1|	-	0.064	13.1	2.4	0.15	11.9	0.0	2.7	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
KORA	PF16509.5	gi|564290501|ref|YP_008876805.1|	-	0.084	13.2	0.0	0.17	12.2	0.0	1.4	1	0	0	1	1	1	0	TrfB	plasmid	transcriptional	repressor
HTH_Tnp_4	PF13613.6	gi|564290501|ref|YP_008876805.1|	-	0.096	12.4	0.0	0.27	11.0	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_10	PF04967.12	gi|564290501|ref|YP_008876805.1|	-	0.11	12.3	0.1	0.4	10.5	0.0	2.0	2	0	0	2	2	2	0	HTH	DNA	binding	domain
RepB	PF07506.11	gi|564290501|ref|YP_008876805.1|	-	0.12	12.4	0.1	0.33	11.0	0.0	1.7	2	0	0	2	2	2	0	RepB	plasmid	partitioning	protein
HNF-1_N	PF04814.13	gi|564290501|ref|YP_008876805.1|	-	0.17	12.5	0.0	0.33	11.6	0.0	1.3	1	0	0	1	1	1	0	Hepatocyte	nuclear	factor	1	(HNF-1),	N	terminus
TrbH	PF07283.11	gi|564290501|ref|YP_008876805.1|	-	0.19	11.9	0.0	0.4	10.9	0.0	1.5	1	0	0	1	1	1	0	Conjugal	transfer	protein	TrbH
Methyltransf_25	PF13649.6	gi|564290502|ref|YP_008876806.1|	-	1.3e-13	51.4	0.0	2.5e-13	50.6	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564290502|ref|YP_008876806.1|	-	1.5e-13	51.2	0.0	2.5e-13	50.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564290502|ref|YP_008876806.1|	-	4.7e-12	45.7	0.0	6.4e-12	45.3	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|564290502|ref|YP_008876806.1|	-	1.9e-11	44.1	0.0	2.4e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290502|ref|YP_008876806.1|	-	5.3e-10	39.3	0.0	6.4e-10	39.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564290502|ref|YP_008876806.1|	-	1.3e-09	38.7	0.0	2e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|564290502|ref|YP_008876806.1|	-	6.2e-07	29.4	0.0	7.6e-07	29.1	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
FtsJ	PF01728.19	gi|564290502|ref|YP_008876806.1|	-	0.00016	21.9	0.0	0.00052	20.2	0.0	1.7	1	1	1	2	2	2	1	FtsJ-like	methyltransferase
GCD14	PF08704.10	gi|564290502|ref|YP_008876806.1|	-	0.0069	16.1	0.0	0.0098	15.6	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
CMAS	PF02353.20	gi|564290502|ref|YP_008876806.1|	-	0.0069	15.7	0.0	0.01	15.2	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_32	PF13679.6	gi|564290502|ref|YP_008876806.1|	-	0.011	15.7	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.20	gi|564290502|ref|YP_008876806.1|	-	0.016	14.3	0.0	0.023	13.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_2	PF00891.18	gi|564290502|ref|YP_008876806.1|	-	0.048	13.0	0.0	0.071	12.4	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_19	PF04672.12	gi|564290502|ref|YP_008876806.1|	-	0.069	12.6	0.5	0.29	10.6	0.3	2.2	1	1	0	1	1	1	0	S-adenosyl	methyltransferase
MTS	PF05175.14	gi|564290502|ref|YP_008876806.1|	-	0.085	12.4	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
ABC2_membrane	PF01061.24	gi|564290503|ref|YP_008876807.1|	-	1.7e-27	96.3	12.9	2.3e-27	95.8	12.9	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|564290503|ref|YP_008876807.1|	-	1.1e-11	44.4	9.4	1.1e-11	44.4	9.4	1.6	1	1	0	2	2	2	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|564290504|ref|YP_008876808.1|	-	2.7e-29	102.4	0.0	3.8e-29	101.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290504|ref|YP_008876808.1|	-	2.3e-13	50.6	0.0	2.6e-09	37.3	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|564290504|ref|YP_008876808.1|	-	4.2e-08	33.8	0.0	8.6e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|564290504|ref|YP_008876808.1|	-	5.2e-05	23.0	0.9	5.2e-05	23.0	0.9	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|564290504|ref|YP_008876808.1|	-	0.011	15.5	0.0	1.5	8.5	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_16	PF13191.6	gi|564290504|ref|YP_008876808.1|	-	0.013	15.9	0.1	0.026	14.9	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564290504|ref|YP_008876808.1|	-	0.014	15.1	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290504|ref|YP_008876808.1|	-	0.043	13.7	0.0	0.56	10.1	0.0	2.2	1	1	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|564290504|ref|YP_008876808.1|	-	0.059	13.9	0.0	0.12	12.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.17	gi|564290504|ref|YP_008876808.1|	-	0.063	13.0	0.0	0.45	10.2	0.0	2.0	2	0	0	2	2	2	0	Thymidylate	kinase
SRP54	PF00448.22	gi|564290504|ref|YP_008876808.1|	-	0.07	12.8	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
SbcCD_C	PF13558.6	gi|564290504|ref|YP_008876808.1|	-	0.097	12.9	0.0	0.21	11.8	0.0	1.7	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
ATP_bind_1	PF03029.17	gi|564290504|ref|YP_008876808.1|	-	0.13	12.0	0.0	0.18	11.6	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA	PF00004.29	gi|564290504|ref|YP_008876808.1|	-	0.15	12.5	0.1	0.33	11.4	0.1	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|564290504|ref|YP_008876808.1|	-	0.15	12.0	0.0	1	9.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
HTH_10	PF04967.12	gi|564290505|ref|YP_008876809.1|	-	4.1e-18	64.9	0.0	6.5e-18	64.3	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|564290505|ref|YP_008876809.1|	-	1.1e-05	25.0	0.1	0.001	18.7	0.0	2.2	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|564290505|ref|YP_008876809.1|	-	0.00084	19.1	0.1	0.0019	17.9	0.1	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
GerE	PF00196.19	gi|564290505|ref|YP_008876809.1|	-	0.0019	17.7	0.0	0.0045	16.5	0.0	1.6	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.16	gi|564290505|ref|YP_008876809.1|	-	0.0026	17.2	0.0	0.0056	16.2	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_20	PF12840.7	gi|564290505|ref|YP_008876809.1|	-	0.01	15.9	0.4	0.027	14.5	0.1	2.0	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|564290505|ref|YP_008876809.1|	-	0.029	14.1	0.0	0.11	12.3	0.0	2.0	2	1	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564290505|ref|YP_008876809.1|	-	0.044	13.7	0.2	0.11	12.4	0.2	1.7	1	0	0	1	1	1	0	MarR	family
HTH_29	PF13551.6	gi|564290505|ref|YP_008876809.1|	-	0.087	12.9	0.1	0.57	10.2	0.0	2.1	2	0	0	2	2	2	0	Winged	helix-turn	helix
LacI	PF00356.21	gi|564290505|ref|YP_008876809.1|	-	0.096	12.5	0.1	19	5.2	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
HTH_24	PF13412.6	gi|564290505|ref|YP_008876809.1|	-	0.18	11.4	0.0	0.39	10.3	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Methyltransf_25	PF13649.6	gi|564290508|ref|YP_008876812.1|	-	7.1e-05	23.4	0.1	0.014	16.1	0.0	2.9	3	1	0	3	3	3	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|564290508|ref|YP_008876812.1|	-	0.0003	20.9	0.0	0.00035	20.7	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_11	PF08241.12	gi|564290508|ref|YP_008876812.1|	-	0.00067	20.3	0.2	0.0067	17.1	0.2	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
PBP-Tp47_c	PF14888.6	gi|564290508|ref|YP_008876812.1|	-	0.059	13.3	0.0	0.084	12.8	0.0	1.2	1	0	0	1	1	1	0	Penicillin-binding	protein	Tp47	domain	C
Thi4	PF01946.17	gi|564290509|ref|YP_008876813.1|	-	2.5e-59	200.4	0.8	3.2e-48	164.0	0.3	2.2	1	1	1	2	2	2	2	Thi4	family
FAD_oxidored	PF12831.7	gi|564290509|ref|YP_008876813.1|	-	4.5e-12	46.1	0.5	8.7e-12	45.1	0.5	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|564290509|ref|YP_008876813.1|	-	9.5e-11	41.4	1.1	3.6e-08	32.9	0.5	2.2	1	1	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564290509|ref|YP_008876813.1|	-	1.3e-10	41.1	0.1	2.4e-10	40.2	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
DAO	PF01266.24	gi|564290509|ref|YP_008876813.1|	-	1.6e-10	41.1	1.1	2.5e-06	27.3	0.3	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564290509|ref|YP_008876813.1|	-	2.5e-09	36.4	0.0	3.4e-09	35.9	0.0	1.2	1	0	0	1	1	1	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|564290509|ref|YP_008876813.1|	-	5.8e-09	36.0	0.3	3.8e-08	33.4	0.1	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.14	gi|564290509|ref|YP_008876813.1|	-	6.5e-08	32.2	0.1	1.4e-07	31.0	0.1	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.14	gi|564290509|ref|YP_008876813.1|	-	6.5e-06	25.3	0.3	0.0014	17.6	0.2	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Pyr_redox_3	PF13738.6	gi|564290509|ref|YP_008876813.1|	-	1.9e-05	24.1	0.1	3.5e-05	23.2	0.1	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564290509|ref|YP_008876813.1|	-	1.9e-05	25.1	1.5	2.8e-05	24.6	0.3	1.9	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564290509|ref|YP_008876813.1|	-	3.9e-05	22.9	0.3	0.0013	17.9	0.1	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|564290509|ref|YP_008876813.1|	-	4.5e-05	23.5	0.4	0.00014	21.9	0.1	1.9	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Amino_oxidase	PF01593.24	gi|564290509|ref|YP_008876813.1|	-	0.00026	20.4	0.0	0.00092	18.6	0.0	1.9	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.22	gi|564290509|ref|YP_008876813.1|	-	0.00081	18.6	0.3	0.0013	17.9	0.3	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Glu_dehyd_C	PF16912.5	gi|564290509|ref|YP_008876813.1|	-	0.0011	18.5	0.5	1.7	8.1	0.0	2.7	3	0	0	3	3	3	2	Glucose	dehydrogenase	C-terminus
Shikimate_DH	PF01488.20	gi|564290509|ref|YP_008876813.1|	-	0.0018	18.4	0.0	0.086	12.9	0.0	2.2	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|564290509|ref|YP_008876813.1|	-	0.0019	18.6	0.1	0.004	17.6	0.1	1.7	1	1	0	1	1	1	1	Putative	NAD(P)-binding
YjeF_N	PF03853.15	gi|564290509|ref|YP_008876813.1|	-	0.011	15.6	0.1	0.38	10.6	0.0	2.3	2	0	0	2	2	2	0	YjeF-related	protein	N-terminus
TrkA_N	PF02254.18	gi|564290509|ref|YP_008876813.1|	-	0.033	14.5	1.0	0.045	14.0	0.1	1.7	2	0	0	2	2	1	0	TrkA-N	domain
Ribosomal_S2	PF00318.20	gi|564290509|ref|YP_008876813.1|	-	0.042	13.1	0.0	0.059	12.6	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S2
AlaDh_PNT_C	PF01262.21	gi|564290509|ref|YP_008876813.1|	-	0.062	12.6	0.2	0.16	11.3	0.1	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF1188	PF06690.11	gi|564290509|ref|YP_008876813.1|	-	0.11	12.0	0.0	5.2	6.5	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1188)
Gate	PF07670.14	gi|564290510|ref|YP_008876814.1|	-	3.5e-06	27.3	1.6	3.5e-06	27.3	1.6	4.0	3	2	2	5	5	5	2	Nucleoside	recognition
HTH_10	PF04967.12	gi|564290511|ref|YP_008876815.1|	-	3.1e-18	65.3	0.4	7.2e-18	64.1	0.3	1.7	2	0	0	2	2	2	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|564290511|ref|YP_008876815.1|	-	5.5e-08	32.4	0.6	7.9e-07	28.7	0.6	2.3	1	1	0	1	1	1	1	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|564290511|ref|YP_008876815.1|	-	0.00056	19.4	0.3	0.0015	18.0	0.3	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_29	PF13551.6	gi|564290511|ref|YP_008876815.1|	-	0.0087	16.1	0.1	0.37	10.8	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.6	gi|564290511|ref|YP_008876815.1|	-	0.011	15.8	0.1	0.16	12.1	0.1	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
GerE	PF00196.19	gi|564290511|ref|YP_008876815.1|	-	0.071	12.7	0.0	0.49	10.0	0.0	2.1	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_24	PF13412.6	gi|564290511|ref|YP_008876815.1|	-	0.084	12.4	0.2	0.37	10.4	0.0	1.9	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Urocanase_C	PF17392.2	gi|564290512|ref|YP_008876816.1|	-	6.4e-87	290.1	0.2	9.7e-87	289.5	0.2	1.3	1	0	0	1	1	1	1	Urocanase	C-terminal	domain
Urocanase	PF01175.18	gi|564290512|ref|YP_008876816.1|	-	5.7e-82	274.4	0.1	7.9e-82	274.0	0.1	1.2	1	0	0	1	1	1	1	Urocanase	Rossmann-like	domain
Urocanase_N	PF17391.2	gi|564290512|ref|YP_008876816.1|	-	2.1e-57	192.3	0.0	4.1e-57	191.4	0.0	1.4	1	0	0	1	1	1	1	Urocanase	N-terminal	domain
Arginase	PF00491.21	gi|564290513|ref|YP_008876817.1|	-	1.3e-57	195.4	1.1	1.5e-57	195.2	1.1	1.0	1	0	0	1	1	1	1	Arginase	family
GCH_III	PF05165.12	gi|564290513|ref|YP_008876817.1|	-	0.023	13.9	0.0	0.045	13.0	0.0	1.5	1	0	0	1	1	1	0	GTP	cyclohydrolase	III
Amidohydro_3	PF07969.11	gi|564290514|ref|YP_008876818.1|	-	2.1e-12	47.3	12.8	4.2e-06	26.5	6.8	2.2	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|564290514|ref|YP_008876818.1|	-	3.4e-12	46.4	0.6	5e-05	22.8	0.2	2.2	1	1	1	2	2	2	2	Amidohydrolase	family
vATP-synt_AC39	PF01992.16	gi|564290514|ref|YP_008876818.1|	-	0.16	11.4	0.0	0.24	10.9	0.0	1.1	1	0	0	1	1	1	0	ATP	synthase	(C/AC39)	subunit
Lyase_aromatic	PF00221.19	gi|564290515|ref|YP_008876819.1|	-	3e-186	619.6	13.4	3.5e-186	619.4	13.4	1.0	1	0	0	1	1	1	1	Aromatic	amino	acid	lyase
AAA	PF00004.29	gi|564290516|ref|YP_008876820.1|	-	1.2e-80	268.4	0.0	1.9e-39	135.1	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_3	PF17862.1	gi|564290516|ref|YP_008876820.1|	-	3.2e-12	46.1	2.7	4.5e-06	26.4	0.2	2.6	2	0	0	2	2	2	2	AAA+	lid	domain
RuvB_N	PF05496.12	gi|564290516|ref|YP_008876820.1|	-	3e-11	43.3	0.0	9e-05	22.3	0.0	2.4	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_5	PF07728.14	gi|564290516|ref|YP_008876820.1|	-	1.2e-10	41.6	0.3	7.6e-05	22.7	0.0	3.4	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.6	gi|564290516|ref|YP_008876820.1|	-	2.2e-10	41.2	5.1	0.0054	17.1	0.3	4.9	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_2	PF07724.14	gi|564290516|ref|YP_008876820.1|	-	4.8e-10	39.8	0.0	0.00037	20.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
IstB_IS21	PF01695.17	gi|564290516|ref|YP_008876820.1|	-	6.3e-08	32.6	0.4	0.0079	15.9	0.1	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_22	PF13401.6	gi|564290516|ref|YP_008876820.1|	-	1.1e-07	32.2	0.1	0.023	14.9	0.0	3.5	2	2	0	2	2	2	2	AAA	domain
AAA_33	PF13671.6	gi|564290516|ref|YP_008876820.1|	-	1.7e-07	31.5	0.0	0.066	13.4	0.0	3.8	4	0	0	4	4	3	2	AAA	domain
AAA_14	PF13173.6	gi|564290516|ref|YP_008876820.1|	-	2.2e-07	31.0	0.0	0.019	15.0	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.6	gi|564290516|ref|YP_008876820.1|	-	2.9e-07	31.1	0.0	0.049	14.2	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.22	gi|564290516|ref|YP_008876820.1|	-	3.4e-07	30.6	0.0	0.025	15.0	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
NACHT	PF05729.12	gi|564290516|ref|YP_008876820.1|	-	4.1e-07	30.1	0.6	0.71	9.8	0.0	4.2	2	2	2	4	4	4	2	NACHT	domain
Viral_helicase1	PF01443.18	gi|564290516|ref|YP_008876820.1|	-	2.1e-06	27.7	0.0	0.058	13.1	0.0	2.3	2	0	0	2	2	2	2	Viral	(Superfamily	1)	RNA	helicase
Bac_DnaA	PF00308.18	gi|564290516|ref|YP_008876820.1|	-	2.8e-05	24.1	0.0	0.11	12.3	0.0	2.8	2	2	0	2	2	2	2	Bacterial	dnaA	protein
AAA_28	PF13521.6	gi|564290516|ref|YP_008876820.1|	-	3.8e-05	24.0	1.6	0.34	11.1	0.0	3.7	4	1	0	4	4	3	2	AAA	domain
TIP49	PF06068.13	gi|564290516|ref|YP_008876820.1|	-	5.4e-05	22.6	0.0	0.4	9.8	0.0	2.6	2	1	1	3	3	3	2	TIP49	P-loop	domain
Mg_chelatase	PF01078.21	gi|564290516|ref|YP_008876820.1|	-	5.9e-05	22.5	0.2	0.2	11.0	0.1	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Zeta_toxin	PF06414.12	gi|564290516|ref|YP_008876820.1|	-	6.2e-05	22.4	0.2	0.26	10.5	0.0	2.9	3	0	0	3	3	3	2	Zeta	toxin
ABC_tran	PF00005.27	gi|564290516|ref|YP_008876820.1|	-	0.00011	22.7	0.0	0.63	10.6	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
AAA_25	PF13481.6	gi|564290516|ref|YP_008876820.1|	-	0.00031	20.4	4.2	2.6	7.6	0.2	4.1	2	2	1	3	3	3	1	AAA	domain
Rad17	PF03215.15	gi|564290516|ref|YP_008876820.1|	-	0.00036	20.5	0.0	0.91	9.4	0.0	2.3	2	0	0	2	2	2	2	Rad17	P-loop	domain
AAA_11	PF13086.6	gi|564290516|ref|YP_008876820.1|	-	0.00037	20.4	0.0	0.3	10.8	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.11	gi|564290516|ref|YP_008876820.1|	-	0.00044	20.1	0.0	0.77	9.6	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.6	gi|564290516|ref|YP_008876820.1|	-	0.0014	19.0	0.2	1.6	9.2	0.0	2.8	2	0	0	2	2	2	1	AAA	domain
TsaE	PF02367.17	gi|564290516|ref|YP_008876820.1|	-	0.0015	18.5	0.0	1.1	9.3	0.0	2.4	2	0	0	2	2	2	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Cytidylate_kin2	PF13189.6	gi|564290516|ref|YP_008876820.1|	-	0.0016	18.6	0.0	0.66	10.1	0.0	2.6	2	0	0	2	2	2	1	Cytidylate	kinase-like	family
AAA_7	PF12775.7	gi|564290516|ref|YP_008876820.1|	-	0.0029	17.1	0.0	1.3	8.5	0.0	2.6	2	1	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_24	PF13479.6	gi|564290516|ref|YP_008876820.1|	-	0.004	16.9	0.1	1.2	8.8	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|564290516|ref|YP_008876820.1|	-	0.0082	16.3	0.1	3.5	7.8	0.0	2.6	2	1	0	2	2	2	1	Sigma-54	interaction	domain
SKI	PF01202.22	gi|564290516|ref|YP_008876820.1|	-	0.024	14.8	0.0	10	6.2	0.0	2.6	2	0	0	2	2	2	0	Shikimate	kinase
Guanylate_kin	PF00625.21	gi|564290516|ref|YP_008876820.1|	-	0.031	13.9	0.1	22	4.7	0.0	3.7	3	2	2	5	5	5	0	Guanylate	kinase
Parvo_NS1	PF01057.17	gi|564290516|ref|YP_008876820.1|	-	0.045	12.8	0.0	7	5.7	0.0	2.1	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
AAA_30	PF13604.6	gi|564290516|ref|YP_008876820.1|	-	0.045	13.5	0.0	6.4	6.4	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|564290516|ref|YP_008876820.1|	-	0.052	13.2	0.0	11	5.6	0.0	2.9	3	0	0	3	3	3	0	Sigma-54	interaction	domain
ATPase_2	PF01637.18	gi|564290516|ref|YP_008876820.1|	-	0.066	13.1	0.2	2.9	7.7	0.0	3.0	3	1	1	4	4	4	0	ATPase	domain	predominantly	from	Archaea
PhoH	PF02562.16	gi|564290516|ref|YP_008876820.1|	-	0.067	12.6	0.4	8.5	5.8	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_19	PF13245.6	gi|564290516|ref|YP_008876820.1|	-	0.088	13.1	0.1	17	5.7	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
DUF815	PF05673.13	gi|564290516|ref|YP_008876820.1|	-	0.11	11.6	0.0	8.4	5.5	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
Lipoprotein_Ltp	PF07553.11	gi|564290516|ref|YP_008876820.1|	-	0.13	12.6	0.1	24	5.3	0.0	2.5	2	0	0	2	2	2	0	Host	cell	surface-exposed	lipoprotein
PPS_PS	PF02006.16	gi|564290517|ref|YP_008876821.1|	-	2.5e-70	235.6	1.1	3.1e-70	235.3	1.1	1.1	1	0	0	1	1	1	1	Phosphopantothenate/pantothenate	synthetase
Phage_GPD	PF05954.11	gi|564290517|ref|YP_008876821.1|	-	0.057	12.7	0.2	0.095	12.0	0.2	1.3	1	0	0	1	1	1	0	Phage	late	control	gene	D	protein	(GPD)
RTT107_BRCT_6	PF16771.5	gi|564290517|ref|YP_008876821.1|	-	0.12	12.5	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	Regulator	of	Ty1	transposition	protein	107	BRCT	domain
PhzC-PhzF	PF02567.16	gi|564290518|ref|YP_008876822.1|	-	2.9e-36	125.4	0.6	3.3e-36	125.2	0.6	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
DAP_epimerase	PF01678.19	gi|564290518|ref|YP_008876822.1|	-	0.00013	22.2	0.5	0.00049	20.3	0.1	2.0	2	0	0	2	2	2	1	Diaminopimelate	epimerase
PPDK_N	PF01326.19	gi|564290519|ref|YP_008876823.1|	-	3.7e-106	355.1	0.1	5.5e-106	354.5	0.1	1.3	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.18	gi|564290519|ref|YP_008876823.1|	-	4.8e-80	268.8	0.0	6.9e-80	268.3	0.0	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.23	gi|564290519|ref|YP_008876823.1|	-	4.4e-30	103.2	2.5	1.9e-29	101.2	1.8	2.6	3	0	0	3	3	3	1	PEP-utilising	enzyme,	mobile	domain
ATPase	PF06745.13	gi|564290520|ref|YP_008876824.1|	-	5.8e-06	25.8	0.2	0.022	14.1	0.3	2.4	3	0	0	3	3	3	2	KaiC
MtrD	PF04207.12	gi|564290520|ref|YP_008876824.1|	-	0.15	11.8	0.4	0.23	11.1	0.4	1.2	1	0	0	1	1	1	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	D
PFL-like	PF02901.15	gi|564290520|ref|YP_008876824.1|	-	0.29	9.7	0.0	0.45	9.1	0.0	1.2	1	0	0	1	1	1	0	Pyruvate	formate	lyase-like
Pyridoxal_deC	PF00282.19	gi|564290521|ref|YP_008876825.1|	-	1.9e-24	86.1	0.0	7.1e-24	84.2	0.0	1.7	1	1	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.19	gi|564290521|ref|YP_008876825.1|	-	8.9e-09	34.8	0.0	1.3e-08	34.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
THB	PF18362.1	gi|564290521|ref|YP_008876825.1|	-	0.14	11.7	0.0	1.5	8.5	0.0	2.6	3	0	0	3	3	3	0	Tri-helix	bundle	domain
SNARE_assoc	PF09335.11	gi|564290522|ref|YP_008876826.1|	-	3e-10	40.6	4.2	7.8e-10	39.3	4.2	1.8	1	1	0	1	1	1	1	SNARE	associated	Golgi	protein
tRNA-synt_1g	PF09334.11	gi|564290523|ref|YP_008876827.1|	-	1.1e-135	452.4	0.1	5.1e-134	446.9	0.1	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA_bind	PF01588.20	gi|564290523|ref|YP_008876827.1|	-	6.2e-22	77.5	0.0	1e-21	76.9	0.0	1.3	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
tRNA-synt_1	PF00133.22	gi|564290523|ref|YP_008876827.1|	-	3.5e-09	35.5	0.3	2.9e-06	25.8	0.1	2.6	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|564290523|ref|YP_008876827.1|	-	6.7e-08	32.6	0.0	1.2e-07	31.9	0.0	1.3	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.19	gi|564290523|ref|YP_008876827.1|	-	5.1e-06	26.1	0.0	0.00074	19.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1d	PF00750.19	gi|564290523|ref|YP_008876827.1|	-	0.023	13.7	0.0	0.1	11.6	0.0	1.9	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(R)
HSCB_C	PF07743.13	gi|564290523|ref|YP_008876827.1|	-	0.28	11.7	4.7	23	5.6	2.1	3.1	3	0	0	3	3	3	0	HSCB	C-terminal	oligomerisation	domain
NfeD	PF01957.18	gi|564290525|ref|YP_008876829.1|	-	2.3e-08	34.3	0.0	5e-08	33.2	0.0	1.5	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
Band_7	PF01145.25	gi|564290526|ref|YP_008876830.1|	-	5.8e-41	140.5	3.0	1.1e-40	139.5	3.0	1.5	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.6	gi|564290526|ref|YP_008876830.1|	-	0.0069	16.1	0.1	0.013	15.2	0.1	1.5	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
SNN_transmemb	PF09049.10	gi|564290526|ref|YP_008876830.1|	-	1.2	9.1	3.2	2.7	8.0	3.2	1.5	1	0	0	1	1	1	0	Stannin	transmembrane
MarR_2	PF12802.7	gi|564290527|ref|YP_008876831.1|	-	1e-10	41.3	0.6	1.7e-09	37.4	0.2	2.6	2	1	0	2	2	2	1	MarR	family
MarR	PF01047.22	gi|564290527|ref|YP_008876831.1|	-	6.3e-08	32.4	0.0	5.9e-07	29.3	0.0	2.2	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564290527|ref|YP_008876831.1|	-	6.4e-08	32.3	0.2	1.4e-05	24.9	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|564290527|ref|YP_008876831.1|	-	9.1e-08	31.9	0.0	1.7e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|564290527|ref|YP_008876831.1|	-	1.3e-07	31.4	0.0	2.4e-05	24.1	0.1	2.2	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564290527|ref|YP_008876831.1|	-	3.2e-06	27.1	2.0	4.3e-05	23.5	0.4	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290527|ref|YP_008876831.1|	-	8.8e-06	25.4	4.4	0.00034	20.3	0.1	2.9	2	1	1	3	3	3	2	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564290527|ref|YP_008876831.1|	-	1.6e-05	24.8	0.0	4e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564290527|ref|YP_008876831.1|	-	2.5e-05	23.7	0.0	5.5e-05	22.6	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_34	PF13601.6	gi|564290527|ref|YP_008876831.1|	-	0.00014	21.9	0.0	0.36	11.0	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|564290527|ref|YP_008876831.1|	-	0.00016	21.3	0.1	0.0018	17.9	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.19	gi|564290527|ref|YP_008876831.1|	-	0.002	18.3	0.0	0.0066	16.6	0.0	1.9	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Rrf2	PF02082.20	gi|564290527|ref|YP_008876831.1|	-	0.0049	17.2	0.0	0.023	15.0	0.0	2.0	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_29	PF13551.6	gi|564290527|ref|YP_008876831.1|	-	0.008	16.2	0.0	0.039	14.0	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_23	PF13384.6	gi|564290527|ref|YP_008876831.1|	-	0.018	14.8	0.0	0.042	13.7	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_36	PF13730.6	gi|564290527|ref|YP_008876831.1|	-	0.037	14.0	0.0	0.09	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|564290527|ref|YP_008876831.1|	-	0.057	13.2	0.1	0.18	11.6	0.0	1.9	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_3	PF01381.22	gi|564290527|ref|YP_008876831.1|	-	0.061	13.4	0.0	0.29	11.2	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix
HTH_CodY	PF08222.11	gi|564290527|ref|YP_008876831.1|	-	0.13	11.8	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
PAS_3	PF08447.12	gi|564290528|ref|YP_008876832.1|	-	9.6e-24	83.5	0.8	2.7e-13	50.0	0.0	3.1	3	0	0	3	3	3	2	PAS	fold
Response_reg	PF00072.24	gi|564290528|ref|YP_008876832.1|	-	3.9e-19	68.9	0.0	1e-18	67.6	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_9	PF13426.7	gi|564290528|ref|YP_008876832.1|	-	6.4e-17	61.7	0.6	8.7e-12	45.2	0.2	2.5	2	0	0	2	2	2	2	PAS	domain
PAS_4	PF08448.10	gi|564290528|ref|YP_008876832.1|	-	1e-15	57.9	1.3	1.8e-11	44.2	0.1	2.8	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|564290528|ref|YP_008876832.1|	-	1.1e-14	54.9	0.1	1.2e-13	51.5	0.0	2.6	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564290528|ref|YP_008876832.1|	-	1.7e-09	37.5	0.7	4.9e-09	36.1	0.7	1.9	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|564290528|ref|YP_008876832.1|	-	8.8e-09	35.4	0.2	1.6e-06	28.1	0.1	2.7	2	0	0	2	2	2	1	PAS	fold
PAS_8	PF13188.7	gi|564290528|ref|YP_008876832.1|	-	0.00021	21.2	0.0	0.00069	19.6	0.0	1.9	1	0	0	1	1	1	1	PAS	domain
LexA_DNA_bind	PF01726.16	gi|564290529|ref|YP_008876833.1|	-	0.0036	17.1	0.0	0.005	16.6	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
Sigma54_CBD	PF04963.13	gi|564290529|ref|YP_008876833.1|	-	0.1	12.4	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	Sigma-54	factor,	core	binding	domain
HTH_6	PF01418.17	gi|564290529|ref|YP_008876833.1|	-	0.13	12.3	0.0	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_24	PF13412.6	gi|564290529|ref|YP_008876833.1|	-	0.14	11.8	1.0	0.7	9.5	0.1	2.3	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
TRAM	PF01938.20	gi|564290530|ref|YP_008876834.1|	-	4.7e-14	52.1	2.5	9.5e-14	51.1	2.5	1.5	1	0	0	1	1	1	1	TRAM	domain
DUF4249	PF14054.6	gi|564290530|ref|YP_008876834.1|	-	0.036	13.7	0.2	0.038	13.6	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4249)
CxxCxxCC	PF03692.15	gi|564290531|ref|YP_008876835.1|	-	7.9e-12	45.7	0.2	2.5e-11	44.1	0.2	1.8	1	1	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
Lactamase_B	PF00753.27	gi|564290532|ref|YP_008876836.1|	-	5.6e-16	59.1	9.3	7.9e-16	58.6	9.3	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
BLACT_WH	PF17778.1	gi|564290532|ref|YP_008876836.1|	-	0.00012	22.0	0.4	0.00028	20.8	0.1	1.8	2	0	0	2	2	2	1	Beta-lactamase	associated	winged	helix	domain
Gluconate_2-dh3	PF13618.6	gi|564290532|ref|YP_008876836.1|	-	0.068	13.4	0.0	0.098	12.9	0.0	1.3	1	0	0	1	1	1	0	Gluconate	2-dehydrogenase	subunit	3
HTH_40	PF14493.6	gi|564290532|ref|YP_008876836.1|	-	0.069	13.6	0.0	0.12	12.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564290533|ref|YP_008876837.1|	-	6.9e-08	31.9	0.0	1e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564290533|ref|YP_008876837.1|	-	1.4e-05	24.9	0.1	1.8e-05	24.5	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564290533|ref|YP_008876837.1|	-	3.6e-05	23.8	0.3	8.4e-05	22.6	0.3	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.21	gi|564290533|ref|YP_008876837.1|	-	0.00061	19.4	0.0	0.001	18.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|564290533|ref|YP_008876837.1|	-	0.0012	18.7	0.0	0.0017	18.2	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_12	PF08461.10	gi|564290533|ref|YP_008876837.1|	-	0.0021	18.0	0.1	0.0094	15.9	0.1	2.0	1	1	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
TrmB	PF01978.19	gi|564290533|ref|YP_008876837.1|	-	0.0055	16.6	0.0	0.0072	16.2	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|564290533|ref|YP_008876837.1|	-	0.0097	16.2	0.0	0.013	15.8	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_36	PF13730.6	gi|564290533|ref|YP_008876837.1|	-	0.01	15.7	0.0	0.054	13.5	0.0	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290533|ref|YP_008876837.1|	-	0.012	15.4	0.0	0.018	14.8	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564290533|ref|YP_008876837.1|	-	0.018	15.0	0.0	0.021	14.8	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
TFIIE_alpha	PF02002.17	gi|564290533|ref|YP_008876837.1|	-	0.019	14.8	0.0	0.022	14.6	0.0	1.2	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_27	PF13463.6	gi|564290533|ref|YP_008876837.1|	-	0.023	15.2	0.0	0.03	14.8	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|564290533|ref|YP_008876837.1|	-	0.023	14.5	0.0	0.032	14.1	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|564290533|ref|YP_008876837.1|	-	0.086	13.0	0.0	0.11	12.6	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
Replic_Relax	PF13814.6	gi|564290533|ref|YP_008876837.1|	-	0.12	12.4	0.0	0.15	12.1	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
HTH_11	PF08279.12	gi|564290533|ref|YP_008876837.1|	-	0.18	11.8	0.0	0.27	11.2	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
Methyltransf_25	PF13649.6	gi|564290534|ref|YP_008876839.1|	-	3.9e-24	85.2	0.0	5.7e-24	84.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564290534|ref|YP_008876839.1|	-	9.4e-23	80.7	0.0	1.4e-22	80.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290534|ref|YP_008876839.1|	-	1.5e-17	63.8	0.0	2.1e-17	63.3	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564290534|ref|YP_008876839.1|	-	1.6e-14	53.8	0.0	2.1e-14	53.4	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.6	gi|564290534|ref|YP_008876839.1|	-	5.4e-14	52.4	0.0	6.8e-14	52.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564290534|ref|YP_008876839.1|	-	1.1e-12	48.5	0.0	1.6e-12	48.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.11	gi|564290534|ref|YP_008876839.1|	-	1.4e-05	24.2	0.0	2e-05	23.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
UPF0020	PF01170.18	gi|564290534|ref|YP_008876839.1|	-	2.8e-05	23.9	0.0	6.1e-05	22.8	0.0	1.6	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MetW	PF07021.12	gi|564290534|ref|YP_008876839.1|	-	0.00034	20.3	0.0	0.00047	19.8	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
MTS	PF05175.14	gi|564290534|ref|YP_008876839.1|	-	0.00036	20.1	0.0	0.00051	19.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
CMAS	PF02353.20	gi|564290534|ref|YP_008876839.1|	-	0.00075	18.9	0.0	0.00097	18.5	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
RrnaAD	PF00398.20	gi|564290534|ref|YP_008876839.1|	-	0.00077	18.6	0.0	0.00097	18.3	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_15	PF09445.10	gi|564290534|ref|YP_008876839.1|	-	0.001	18.7	0.0	0.0013	18.4	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_20	PF12147.8	gi|564290534|ref|YP_008876839.1|	-	0.0012	18.0	0.0	0.0037	16.5	0.0	1.7	2	1	0	2	2	2	1	Putative	methyltransferase
NodS	PF05401.11	gi|564290534|ref|YP_008876839.1|	-	0.0014	18.3	0.0	0.0017	18.0	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
tRNA_U5-meth_tr	PF05958.11	gi|564290534|ref|YP_008876839.1|	-	0.005	15.9	0.0	0.0093	15.0	0.0	1.4	1	1	1	2	2	2	1	tRNA	(Uracil-5-)-methyltransferase
Methyltransf_4	PF02390.17	gi|564290534|ref|YP_008876839.1|	-	0.013	15.0	0.0	0.019	14.4	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
FtsJ	PF01728.19	gi|564290534|ref|YP_008876839.1|	-	0.021	15.0	0.0	0.026	14.7	0.0	1.2	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
TehB	PF03848.14	gi|564290534|ref|YP_008876839.1|	-	0.024	14.0	0.0	0.029	13.8	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
TPMT	PF05724.11	gi|564290534|ref|YP_008876839.1|	-	0.11	12.1	0.0	0.15	11.7	0.0	1.2	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
DUF938	PF06080.12	gi|564290534|ref|YP_008876839.1|	-	0.15	11.8	0.0	0.55	10.0	0.0	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF938)
Methyltransf_18	PF12847.7	gi|564290534|ref|YP_008876839.1|	-	0.19	11.7	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Glycos_transf_2	PF00535.26	gi|564290535|ref|YP_008876840.1|	-	2.3e-12	47.0	0.1	5e-12	46.0	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564290535|ref|YP_008876840.1|	-	0.00069	19.6	3.8	0.029	14.3	0.5	2.5	2	1	1	3	3	3	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564290535|ref|YP_008876840.1|	-	0.079	12.4	0.1	0.14	11.6	0.0	1.4	2	0	0	2	2	2	0	Glycosyltransferase	like	family	2
Amidohydro_2	PF04909.14	gi|564290536|ref|YP_008876841.1|	-	2.3e-13	50.6	0.6	3.3e-13	50.1	0.6	1.2	1	0	0	1	1	1	1	Amidohydrolase
Cpn60_TCP1	PF00118.24	gi|564290537|ref|YP_008876842.1|	-	1.1e-144	482.8	20.3	1.2e-144	482.6	20.3	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
DUF371	PF04027.13	gi|564290538|ref|YP_008876843.1|	-	2.5e-54	182.8	1.4	2.8e-54	182.7	1.4	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
Glyco_hydro_2	PF00703.21	gi|564290540|ref|YP_008876845.1|	-	1.1e-06	29.2	0.1	2.5e-06	28.1	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
Cadherin-like	PF12733.7	gi|564290540|ref|YP_008876845.1|	-	1.5	9.4	5.5	18	5.9	0.1	3.1	3	0	0	3	3	3	0	Cadherin-like	beta	sandwich	domain
T3SSipB	PF16535.5	gi|564290541|ref|YP_008876846.1|	-	0.0063	17.0	11.4	0.0063	17.0	11.4	3.3	1	1	1	2	2	2	1	Type	III	cell	invasion	protein	SipB
Fez1	PF06818.15	gi|564290541|ref|YP_008876846.1|	-	1.1	9.6	61.4	0.69	10.3	28.4	2.2	1	1	1	2	2	2	0	Fez1
Laminin_II	PF06009.12	gi|564290541|ref|YP_008876846.1|	-	2.5	8.1	37.7	0.47	10.5	12.1	3.6	1	1	1	3	3	3	0	Laminin	Domain	II
Syntaxin_2	PF14523.6	gi|564290541|ref|YP_008876846.1|	-	4	7.9	36.0	0.049	14.0	6.2	4.1	1	1	1	3	3	3	0	Syntaxin-like	protein
DUF3800	PF12686.7	gi|564290541|ref|YP_008876846.1|	-	5.9	7.5	8.3	28	5.4	8.3	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3800)
LysE	PF01810.18	gi|564290542|ref|YP_008876847.1|	-	4.3e-25	88.3	10.6	2.5e-23	82.6	10.6	2.1	1	1	0	1	1	1	1	LysE	type	translocator
HD	PF01966.22	gi|564290543|ref|YP_008876848.1|	-	5.6e-18	65.3	2.7	7.2e-18	65.0	1.2	1.9	2	0	0	2	2	2	1	HD	domain
PAP2	PF01569.21	gi|564291375|ref|YP_008876849.1|	-	0.029	14.1	0.4	0.036	13.8	0.4	1.1	1	0	0	1	1	1	0	PAP2	superfamily
Acetyltransf_10	PF13673.7	gi|564290544|ref|YP_008876850.1|	-	4.3e-11	42.8	0.0	6.5e-11	42.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564290544|ref|YP_008876850.1|	-	1.1e-10	41.7	0.0	2.7e-10	40.5	0.0	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564290544|ref|YP_008876850.1|	-	3.7e-10	40.1	0.0	6e-10	39.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.7	gi|564290544|ref|YP_008876850.1|	-	0.0025	17.9	0.0	0.031	14.3	0.0	2.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564290544|ref|YP_008876850.1|	-	0.0034	17.3	0.0	0.0063	16.5	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Zn-ribbon_8	PF09723.10	gi|564290544|ref|YP_008876850.1|	-	0.024	14.7	1.0	0.041	14.0	1.0	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
Acetyltransf_4	PF13420.7	gi|564290544|ref|YP_008876850.1|	-	0.06	13.5	0.0	0.091	12.9	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|564290544|ref|YP_008876850.1|	-	0.067	13.3	0.0	0.12	12.6	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564290544|ref|YP_008876850.1|	-	0.12	12.5	0.0	0.23	11.6	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
Fe_dep_repress	PF01325.19	gi|564290545|ref|YP_008876851.1|	-	6.2e-17	61.6	0.0	9.4e-17	61.0	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Fe_dep_repr_C	PF02742.15	gi|564290545|ref|YP_008876851.1|	-	1.6e-10	40.9	0.1	3.4e-10	39.8	0.0	1.5	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_27	PF13463.6	gi|564290545|ref|YP_008876851.1|	-	4.8e-06	27.0	0.0	1.4e-05	25.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|564290545|ref|YP_008876851.1|	-	7.5e-05	22.2	0.0	0.00014	21.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|564290545|ref|YP_008876851.1|	-	7.7e-05	22.6	0.0	0.00018	21.4	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564290545|ref|YP_008876851.1|	-	0.00018	21.3	0.0	0.00031	20.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|564290545|ref|YP_008876851.1|	-	0.0011	18.9	0.0	0.002	17.9	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|564290545|ref|YP_008876851.1|	-	0.0012	19.2	0.0	0.0018	18.6	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
MarR	PF01047.22	gi|564290545|ref|YP_008876851.1|	-	0.0024	17.8	0.0	0.0041	17.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|564290545|ref|YP_008876851.1|	-	0.031	14.1	0.0	0.083	12.7	0.0	1.7	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
FeoC	PF09012.10	gi|564290545|ref|YP_008876851.1|	-	0.044	13.9	0.0	0.23	11.5	0.0	2.0	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564290545|ref|YP_008876851.1|	-	0.063	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564290545|ref|YP_008876851.1|	-	0.083	13.0	0.0	0.19	11.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Get5_C	PF18514.1	gi|564290546|ref|YP_008876852.1|	-	0.089	12.5	0.0	0.25	11.1	0.0	1.8	1	0	0	1	1	1	0	Get5	C-terminal	domain
DUF4226	PF10774.9	gi|564290546|ref|YP_008876852.1|	-	0.11	12.7	2.7	0.94	9.8	0.8	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4226)
Not3	PF04065.15	gi|564290546|ref|YP_008876852.1|	-	0.13	11.6	2.1	0.16	11.3	1.6	1.4	1	1	0	1	1	1	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
UPF0051	PF01458.17	gi|564290547|ref|YP_008876853.1|	-	4.2e-63	212.9	0.8	5.3e-63	212.6	0.8	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
UPF0051	PF01458.17	gi|564290548|ref|YP_008876854.1|	-	6.4e-73	245.1	0.4	8.1e-73	244.7	0.4	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
ABC_tran	PF00005.27	gi|564290549|ref|YP_008876855.1|	-	6.4e-15	55.9	0.1	3.2e-14	53.6	0.1	1.9	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|564290549|ref|YP_008876855.1|	-	7.3e-05	22.3	3.5	0.071	12.5	0.2	2.2	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA	PF00004.29	gi|564290549|ref|YP_008876855.1|	-	0.00016	22.1	0.1	0.16	12.4	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_21	PF13304.6	gi|564290549|ref|YP_008876855.1|	-	0.00017	21.5	0.0	0.074	12.9	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564290549|ref|YP_008876855.1|	-	0.0043	16.7	0.1	0.0082	15.9	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|564290549|ref|YP_008876855.1|	-	0.0046	17.0	0.2	3.6	7.6	0.0	2.8	3	0	0	3	3	3	2	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.6	gi|564290549|ref|YP_008876855.1|	-	0.017	15.4	0.3	0.35	11.1	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_22	PF13401.6	gi|564290549|ref|YP_008876855.1|	-	0.03	14.6	0.0	0.86	9.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.6	gi|564290549|ref|YP_008876855.1|	-	0.08	13.5	0.0	0.36	11.4	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|564290549|ref|YP_008876855.1|	-	0.081	13.4	2.9	1	9.9	2.9	2.3	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.15	gi|564290549|ref|YP_008876855.1|	-	0.1	12.5	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_15	PF13175.6	gi|564290549|ref|YP_008876855.1|	-	0.13	11.9	0.9	0.49	10.0	0.0	1.9	1	1	0	2	2	2	0	AAA	ATPase	domain
DNA_pol_B	PF00136.21	gi|564290550|ref|YP_008876856.1|	-	4.3e-47	160.9	0.0	6.9e-47	160.2	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.19	gi|564290550|ref|YP_008876856.1|	-	7.8e-31	107.4	0.0	1.4e-30	106.6	0.0	1.5	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_2	PF03175.13	gi|564290550|ref|YP_008876856.1|	-	0.016	14.1	0.2	0.39	9.5	0.0	2.2	1	1	0	2	2	2	0	DNA	polymerase	type	B,	organellar	and	viral
AAA_23	PF13476.6	gi|564290554|ref|YP_008876860.1|	-	1.8e-20	74.3	11.9	1.8e-20	74.3	11.9	6.0	1	1	3	4	4	2	1	AAA	domain
Spc7	PF08317.11	gi|564290554|ref|YP_008876860.1|	-	3.9e-08	32.5	121.9	0.00032	19.7	24.3	5.9	1	1	3	5	5	5	5	Spc7	kinetochore	protein
AAA_29	PF13555.6	gi|564290554|ref|YP_008876860.1|	-	1.8e-07	30.8	0.0	3.1e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.6	gi|564290554|ref|YP_008876860.1|	-	2.4e-07	30.9	13.8	1.3e-05	25.1	0.9	3.4	3	1	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_13	PF13166.6	gi|564290554|ref|YP_008876860.1|	-	2.4e-06	26.5	78.9	0.0053	15.5	26.9	5.4	2	1	2	4	4	4	2	AAA	domain
Atg14	PF10186.9	gi|564290554|ref|YP_008876860.1|	-	5.1e-06	25.8	86.1	0.013	14.6	14.8	5.6	2	1	3	5	5	5	4	Vacuolar	sorting	38	and	autophagy-related	subunit	14
AAA_15	PF13175.6	gi|564290554|ref|YP_008876860.1|	-	5.4e-05	23.1	52.2	2.1e+03	-1.9	52.2	4.7	1	1	0	1	1	1	0	AAA	ATPase	domain
SMC_N	PF02463.19	gi|564290554|ref|YP_008876860.1|	-	6.9e-05	22.4	64.8	0.0055	16.2	64.8	2.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
CENP-F_leu_zip	PF10473.9	gi|564290554|ref|YP_008876860.1|	-	0.00013	22.0	20.8	0.00013	22.0	20.8	6.5	3	2	4	7	7	6	4	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Rab5-bind	PF09311.11	gi|564290554|ref|YP_008876860.1|	-	0.00019	20.9	19.9	0.00019	20.9	19.9	5.9	2	1	3	5	5	5	1	Rabaptin-like	protein
TMF_TATA_bd	PF12325.8	gi|564290554|ref|YP_008876860.1|	-	0.00071	19.8	4.6	0.00071	19.8	4.6	8.6	2	2	5	8	8	8	3	TATA	element	modulatory	factor	1	TATA	binding
GAS	PF13851.6	gi|564290554|ref|YP_008876860.1|	-	0.00082	18.8	19.2	0.00082	18.8	19.2	5.6	3	2	3	6	6	6	1	Growth-arrest	specific	micro-tubule	binding
Filament	PF00038.21	gi|564290554|ref|YP_008876860.1|	-	0.003	17.2	45.5	0.003	17.2	45.5	3.5	2	1	0	2	2	1	1	Intermediate	filament	protein
Methyltransf_25	PF13649.6	gi|564290554|ref|YP_008876860.1|	-	0.045	14.5	1.5	17	6.2	0.0	3.6	2	1	0	2	2	2	0	Methyltransferase	domain
AAA_16	PF13191.6	gi|564290554|ref|YP_008876860.1|	-	0.14	12.6	0.0	0.14	12.6	0.0	5.8	2	1	0	2	2	1	0	AAA	ATPase	domain
MukB	PF04310.12	gi|564290554|ref|YP_008876860.1|	-	0.2	11.4	0.0	0.2	11.4	0.0	3.9	3	1	1	4	4	4	0	MukB	N-terminal
ABC_tran	PF00005.27	gi|564290554|ref|YP_008876860.1|	-	0.22	12.0	0.0	0.22	12.0	0.0	5.8	2	1	0	2	2	1	0	ABC	transporter
DUF3450	PF11932.8	gi|564290554|ref|YP_008876860.1|	-	0.83	8.9	104.4	0.15	11.4	10.2	7.2	2	2	3	6	6	6	0	Protein	of	unknown	function	(DUF3450)
Metallophos_2	PF12850.7	gi|564290555|ref|YP_008876861.1|	-	1.4e-11	44.9	0.3	3.2e-11	43.7	0.3	1.6	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564290555|ref|YP_008876861.1|	-	1.1e-10	42.3	2.1	2.1e-10	41.5	2.0	1.6	1	1	1	2	2	2	1	Calcineurin-like	phosphoesterase
TCO89	PF10452.9	gi|564290555|ref|YP_008876861.1|	-	2.5	7.0	7.5	3.3	6.6	7.5	1.1	1	0	0	1	1	1	0	TORC1	subunit	TCO89
DUF4690	PF15756.5	gi|564291376|ref|YP_008876863.1|	-	0.0093	16.6	1.2	0.0093	16.5	1.2	1.0	1	0	0	1	1	1	1	Small	Novel	Rich	in	Cartilage
XhlA	PF10779.9	gi|564290557|ref|YP_008876864.1|	-	0.00046	20.3	4.1	0.0013	18.9	0.3	2.7	2	1	1	3	3	3	1	Haemolysin	XhlA
Osmo_CC	PF08946.10	gi|564290557|ref|YP_008876864.1|	-	0.00052	20.2	0.8	0.0022	18.2	0.5	2.2	3	0	0	3	3	2	1	Osmosensory	transporter	coiled	coil
NPV_P10	PF05531.12	gi|564290557|ref|YP_008876864.1|	-	0.00076	19.9	0.4	0.19	12.2	0.3	2.4	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
BLOC1_2	PF10046.9	gi|564290557|ref|YP_008876864.1|	-	0.0014	18.9	0.3	0.0029	17.9	0.2	1.7	1	1	0	1	1	1	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF1515	PF07439.11	gi|564290557|ref|YP_008876864.1|	-	0.0022	18.0	1.6	0.014	15.4	1.5	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1515)
Phage_GP20	PF06810.11	gi|564290557|ref|YP_008876864.1|	-	0.027	14.3	0.2	0.034	13.9	0.2	1.2	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
ABC_tran_CTD	PF16326.5	gi|564290557|ref|YP_008876864.1|	-	0.041	14.1	5.6	0.14	12.4	1.4	2.9	1	1	2	3	3	3	0	ABC	transporter	C-terminal	domain
DUF4988	PF16378.5	gi|564290557|ref|YP_008876864.1|	-	0.059	13.0	0.3	0.16	11.7	0.2	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function
UPF0184	PF03670.13	gi|564290557|ref|YP_008876864.1|	-	0.064	13.7	2.8	0.22	11.9	0.3	2.5	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
DUF2802	PF10975.8	gi|564290557|ref|YP_008876864.1|	-	0.07	13.3	0.5	0.33	11.1	0.1	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2802)
DUF1664	PF07889.12	gi|564290557|ref|YP_008876864.1|	-	0.075	13.1	0.3	0.12	12.4	0.3	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF2205	PF10224.9	gi|564290557|ref|YP_008876864.1|	-	0.088	12.8	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Short	coiled-coil	protein
Spc7	PF08317.11	gi|564290557|ref|YP_008876864.1|	-	0.11	11.3	1.0	0.14	11.0	1.0	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
DUF5082	PF16888.5	gi|564290557|ref|YP_008876864.1|	-	0.15	12.3	0.7	0.25	11.6	0.2	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF5082)
TolA_bind_tri	PF16331.5	gi|564290557|ref|YP_008876864.1|	-	0.18	11.9	1.5	0.22	11.6	0.4	1.8	2	0	0	2	2	2	0	TolA	binding	protein	trimerisation
TBK1_CCD1	PF18394.1	gi|564290557|ref|YP_008876864.1|	-	0.21	11.1	0.1	0.26	10.8	0.1	1.1	1	0	0	1	1	1	0	TANK-binding	kinase	1	coiled-coil	domain	1
T3SSipB	PF16535.5	gi|564290557|ref|YP_008876864.1|	-	0.46	11.0	3.7	1.9	9.0	4.0	1.7	1	1	1	2	2	2	0	Type	III	cell	invasion	protein	SipB
ABM	PF03992.16	gi|564290558|ref|YP_008876865.1|	-	0.09	12.9	0.0	0.17	12.0	0.0	1.5	1	0	0	1	1	1	0	Antibiotic	biosynthesis	monooxygenase
T2SSE	PF00437.20	gi|564290559|ref|YP_008876866.1|	-	1.7e-32	112.6	0.0	2.6e-32	112.0	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|564290559|ref|YP_008876866.1|	-	4.4e-05	23.9	0.5	4.4e-05	23.9	0.5	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564290559|ref|YP_008876866.1|	-	0.057	13.2	0.1	0.18	11.6	0.1	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|564290559|ref|YP_008876866.1|	-	0.11	12.7	0.0	0.24	11.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF2850	PF11012.8	gi|564290561|ref|YP_008876868.1|	-	0.012	15.8	0.0	0.019	15.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2850)
SBP_bac_3	PF00497.20	gi|564290563|ref|YP_008876870.1|	-	0.2	11.0	0.8	0.25	10.7	0.7	1.3	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	proteins,	family	3
DUF1400	PF07176.11	gi|564290565|ref|YP_008876872.1|	-	0.013	15.8	0.0	0.022	15.0	0.0	1.4	1	1	0	1	1	1	0	Alpha/beta	hydrolase	of	unknown	function	(DUF1400)
NAD_binding_10	PF13460.6	gi|564290566|ref|YP_008876873.1|	-	8.6e-10	38.8	0.0	1.3e-09	38.3	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
TrkA_N	PF02254.18	gi|564290566|ref|YP_008876873.1|	-	2.2e-08	34.4	0.0	6.2e-08	32.9	0.0	1.8	2	0	0	2	2	2	1	TrkA-N	domain
Epimerase	PF01370.21	gi|564290566|ref|YP_008876873.1|	-	3.8e-07	29.8	0.0	5.1e-07	29.4	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|564290566|ref|YP_008876873.1|	-	0.00044	19.3	0.0	0.001	18.1	0.0	1.6	2	0	0	2	2	2	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
DUF1731	PF08338.11	gi|564290566|ref|YP_008876873.1|	-	0.00056	19.7	0.0	0.0013	18.5	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1731)
ApbA	PF02558.16	gi|564290566|ref|YP_008876873.1|	-	0.002	17.8	0.0	0.0059	16.3	0.0	1.7	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
F420_oxidored	PF03807.17	gi|564290566|ref|YP_008876873.1|	-	0.0053	17.3	0.0	0.013	16.1	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.14	gi|564290566|ref|YP_008876873.1|	-	0.02	14.5	0.0	0.038	13.6	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564290566|ref|YP_008876873.1|	-	0.15	12.4	0.0	0.25	11.6	0.0	1.5	1	0	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
DHH	PF01368.20	gi|564290567|ref|YP_008876874.1|	-	1.6e-11	44.3	0.0	2.4e-11	43.8	0.0	1.3	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|564290567|ref|YP_008876874.1|	-	7.9e-10	39.3	0.7	1.5e-09	38.4	0.7	1.4	1	0	0	1	1	1	1	DHHA1	domain
Aldo_ket_red	PF00248.21	gi|564290568|ref|YP_008876875.1|	-	3.5e-32	111.8	0.0	1.9e-25	89.7	0.0	2.1	2	0	0	2	2	2	2	Aldo/keto	reductase	family
DUF2322	PF10084.9	gi|564290568|ref|YP_008876875.1|	-	0.068	13.2	0.1	0.16	12.0	0.1	1.6	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2322)
DUF1451	PF07295.11	gi|564290569|ref|YP_008876876.1|	-	0.0074	16.3	0.1	0.0084	16.2	0.1	1.1	1	0	0	1	1	1	1	Zinc-ribbon	containing	domain
FYVE	PF01363.21	gi|564290569|ref|YP_008876876.1|	-	0.0075	16.4	0.2	0.0092	16.1	0.2	1.1	1	0	0	1	1	1	1	FYVE	zinc	finger
zf-TFIIB	PF13453.6	gi|564290569|ref|YP_008876876.1|	-	0.031	13.6	2.9	0.06	12.7	2.9	1.5	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zinc-ribbons_6	PF07191.12	gi|564290569|ref|YP_008876876.1|	-	0.032	14.2	0.2	0.039	13.9	0.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
Nudix_N_2	PF14803.6	gi|564290569|ref|YP_008876876.1|	-	0.057	13.3	1.2	1.2	9.2	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_9	PF14369.6	gi|564290569|ref|YP_008876876.1|	-	0.083	13.2	3.5	0.3	11.4	3.7	1.7	1	1	1	2	2	2	0	zinc-ribbon
Prok-RING_1	PF14446.6	gi|564290569|ref|YP_008876876.1|	-	0.2	11.6	3.8	0.34	10.9	3.8	1.4	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Anti-TRAP	PF15777.5	gi|564290569|ref|YP_008876876.1|	-	0.23	11.5	2.3	2.2	8.3	2.8	1.9	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zf-ACC	PF17848.1	gi|564290569|ref|YP_008876876.1|	-	7.9	6.7	8.5	18	5.5	0.1	2.5	3	0	0	3	3	3	0	Acetyl-coA	carboxylase	zinc	finger	domain
MFS_1	PF07690.16	gi|564290570|ref|YP_008876877.1|	-	7.7e-27	94.1	51.7	6.2e-24	84.6	33.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564290570|ref|YP_008876877.1|	-	0.0022	17.0	5.3	0.0022	17.0	5.3	2.1	1	1	0	2	2	2	1	MFS_1	like	family
DUF1616	PF07760.11	gi|564290570|ref|YP_008876877.1|	-	0.11	11.9	0.2	0.11	11.9	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1616)
Phage-tail_1	PF09097.10	gi|564290570|ref|YP_008876877.1|	-	0.18	11.6	0.0	0.29	10.9	0.0	1.2	1	0	0	1	1	1	0	Baseplate	structural	protein,	domain	1
NUDIX	PF00293.28	gi|564290572|ref|YP_008876879.1|	-	4.8e-13	49.3	0.1	8e-13	48.6	0.0	1.4	1	1	0	1	1	1	1	NUDIX	domain
Ribosomal_L3	PF00297.22	gi|564290572|ref|YP_008876879.1|	-	0.21	10.5	0.0	7.2	5.5	0.0	2.0	2	0	0	2	2	2	0	Ribosomal	protein	L3
Bac_luciferase	PF00296.20	gi|564290573|ref|YP_008876880.1|	-	0.0033	16.9	0.7	0.0053	16.2	0.4	1.5	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
DAO	PF01266.24	gi|564290574|ref|YP_008876881.1|	-	2.1e-53	182.2	8.7	2.6e-53	181.8	8.7	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564290574|ref|YP_008876881.1|	-	4.2e-06	26.2	2.4	0.00017	20.9	0.7	2.4	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|564290574|ref|YP_008876881.1|	-	8.6e-06	25.2	2.2	5.8e-05	22.5	1.4	2.1	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564290574|ref|YP_008876881.1|	-	4.2e-05	23.7	5.3	0.00012	22.2	4.6	2.1	1	1	1	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.14	gi|564290574|ref|YP_008876881.1|	-	4.8e-05	22.3	1.8	0.0021	16.8	1.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.27	gi|564290574|ref|YP_008876881.1|	-	6.4e-05	23.4	1.3	0.00015	22.2	0.5	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564290574|ref|YP_008876881.1|	-	6.5e-05	22.2	6.0	0.00011	21.4	6.0	1.5	1	1	0	1	1	1	1	FAD	binding	domain
NAD_binding_7	PF13241.6	gi|564290574|ref|YP_008876881.1|	-	0.00071	20.0	0.0	0.0018	18.6	0.0	1.8	1	0	0	1	1	1	1	Putative	NAD(P)-binding
ApbA	PF02558.16	gi|564290574|ref|YP_008876881.1|	-	0.0029	17.3	1.0	0.035	13.7	0.5	2.3	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
Thi4	PF01946.17	gi|564290574|ref|YP_008876881.1|	-	0.01	15.1	0.1	0.016	14.5	0.1	1.4	1	0	0	1	1	1	0	Thi4	family
Pyr_redox_3	PF13738.6	gi|564290574|ref|YP_008876881.1|	-	0.011	15.1	0.8	0.039	13.2	0.3	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.24	gi|564290574|ref|YP_008876881.1|	-	0.015	14.6	1.9	2.6	7.2	0.1	2.1	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
3HCDH_N	PF02737.18	gi|564290574|ref|YP_008876881.1|	-	0.018	14.9	0.4	0.044	13.7	0.4	1.7	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564290574|ref|YP_008876881.1|	-	0.03	13.9	0.2	0.057	13.0	0.2	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|564290574|ref|YP_008876881.1|	-	0.035	13.4	0.8	0.066	12.5	0.8	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.6	gi|564290574|ref|YP_008876881.1|	-	0.039	13.9	1.9	0.18	11.8	0.4	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
FAD_oxidored	PF12831.7	gi|564290574|ref|YP_008876881.1|	-	0.056	12.8	3.6	0.068	12.5	3.6	1.3	1	1	0	1	1	1	0	FAD	dependent	oxidoreductase
NAD_Gly3P_dh_N	PF01210.23	gi|564290574|ref|YP_008876881.1|	-	0.085	12.8	0.2	0.15	12.0	0.2	1.4	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Trp_halogenase	PF04820.14	gi|564290574|ref|YP_008876881.1|	-	0.11	11.3	1.5	0.17	10.7	1.5	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
GIDA	PF01134.22	gi|564290574|ref|YP_008876881.1|	-	0.82	8.7	3.5	0.84	8.6	2.6	1.5	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
HSP20	PF00011.21	gi|564290575|ref|YP_008876882.1|	-	5.1e-09	36.2	0.0	1e-08	35.2	0.0	1.6	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|564290575|ref|YP_008876882.1|	-	0.042	13.4	0.1	0.17	11.5	0.1	2.0	1	1	0	1	1	1	0	HSP20-like	domain	found	in	ArsA
zf-Di19	PF05605.12	gi|564290576|ref|YP_008876883.1|	-	0.13	12.6	1.9	0.16	12.3	0.4	1.8	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
DUF429	PF04250.13	gi|564290577|ref|YP_008876884.1|	-	7.5e-10	38.9	1.6	1e-09	38.5	1.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
MDMPI_N	PF11716.8	gi|564290577|ref|YP_008876884.1|	-	0.22	12.2	4.5	0.088	13.5	0.9	2.1	2	0	0	2	2	2	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
ABC_membrane	PF00664.23	gi|564290578|ref|YP_008876885.1|	-	2.6e-37	129.0	0.8	3.6e-37	128.5	0.8	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|564290578|ref|YP_008876885.1|	-	1.2e-31	110.1	0.0	2.2e-31	109.2	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.19	gi|564290578|ref|YP_008876885.1|	-	0.0002	20.9	0.0	0.0014	18.1	0.0	1.4	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.12	gi|564290578|ref|YP_008876885.1|	-	0.00033	20.0	0.1	0.00094	18.5	0.1	1.7	1	0	0	1	1	1	1	Zeta	toxin
AAA_24	PF13479.6	gi|564290578|ref|YP_008876885.1|	-	0.02	14.6	0.1	0.052	13.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
KAP_NTPase	PF07693.14	gi|564290578|ref|YP_008876885.1|	-	0.041	13.1	0.0	1.7	7.8	0.0	2.1	2	0	0	2	2	2	0	KAP	family	P-loop	domain
AAA_25	PF13481.6	gi|564290578|ref|YP_008876885.1|	-	0.05	13.2	1.1	0.2	11.2	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
SLATT_1	PF18181.1	gi|564290578|ref|YP_008876885.1|	-	0.055	13.4	0.2	0.74	9.8	0.1	2.5	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
AAA_22	PF13401.6	gi|564290578|ref|YP_008876885.1|	-	0.064	13.5	0.4	1.5	9.1	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|564290578|ref|YP_008876885.1|	-	0.099	12.4	0.1	0.23	11.2	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564290578|ref|YP_008876885.1|	-	2.1	8.7	7.1	5.5	7.3	5.1	2.7	2	1	0	2	2	2	0	AAA	ATPase	domain
Na_H_antiporter	PF03553.14	gi|564290579|ref|YP_008876886.1|	-	6.3e-61	206.2	34.3	3.1e-54	184.3	16.2	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
PALP	PF00291.25	gi|564290580|ref|YP_008876887.1|	-	0.056	12.8	0.1	0.06	12.8	0.1	1.1	1	0	0	1	1	1	0	Pyridoxal-phosphate	dependent	enzyme
Radical_SAM	PF04055.21	gi|564290581|ref|YP_008876888.1|	-	2.5e-15	57.3	0.0	3.3e-14	53.6	0.0	2.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
HHH	PF00633.23	gi|564290581|ref|YP_008876888.1|	-	1.8e-05	24.4	0.0	5.9e-05	22.7	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_3	PF12836.7	gi|564290581|ref|YP_008876888.1|	-	0.00011	22.4	0.0	0.00026	21.2	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
PsbU	PF06514.11	gi|564290581|ref|YP_008876888.1|	-	0.0016	18.4	0.1	0.0059	16.6	0.0	2.0	2	0	0	2	2	2	1	Photosystem	II	12	kDa	extrinsic	protein	(PsbU)
HHH_5	PF14520.6	gi|564290581|ref|YP_008876888.1|	-	0.052	14.2	0.0	0.14	12.8	0.0	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|564290581|ref|YP_008876888.1|	-	0.074	13.2	0.0	0.36	11.0	0.0	2.2	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Cdd1	PF11731.8	gi|564290581|ref|YP_008876888.1|	-	0.13	12.5	0.0	1.9	8.8	0.0	2.7	3	0	0	3	3	3	0	Pathogenicity	locus
LPG_synthase_TM	PF03706.13	gi|564290582|ref|YP_008876889.1|	-	2e-34	119.5	34.9	2.7e-34	119.1	34.9	1.1	1	0	0	1	1	1	1	Lysylphosphatidylglycerol	synthase	TM	region
Glycos_transf_2	PF00535.26	gi|564290582|ref|YP_008876889.1|	-	4.8e-26	91.6	0.1	7.2e-26	91.0	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564290582|ref|YP_008876889.1|	-	3.9e-08	33.5	0.0	8.2e-08	32.4	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564290582|ref|YP_008876889.1|	-	0.0017	17.9	0.0	0.0025	17.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|564290582|ref|YP_008876889.1|	-	0.0066	16.9	0.1	0.012	16.1	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DUF726	PF05277.12	gi|564290583|ref|YP_008876890.1|	-	6.7e-10	38.4	0.0	1.3e-09	37.5	0.0	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF726)
DUF900	PF05990.12	gi|564290583|ref|YP_008876890.1|	-	1.6e-07	31.1	0.0	2e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
Thioesterase	PF00975.20	gi|564290583|ref|YP_008876890.1|	-	0.00014	22.1	0.0	0.00026	21.2	0.0	1.5	1	0	0	1	1	1	1	Thioesterase	domain
LCAT	PF02450.15	gi|564290583|ref|YP_008876890.1|	-	0.0017	17.6	0.0	0.0025	17.0	0.0	1.2	1	0	0	1	1	1	1	Lecithin:cholesterol	acyltransferase
Lipase_3	PF01764.25	gi|564290583|ref|YP_008876890.1|	-	0.0036	17.2	0.1	0.011	15.6	0.1	2.0	1	1	0	1	1	1	1	Lipase	(class	3)
PGAP1	PF07819.13	gi|564290583|ref|YP_008876890.1|	-	0.011	15.5	0.0	0.04	13.6	0.0	1.7	1	1	0	1	1	1	0	PGAP1-like	protein
Abhydrolase_6	PF12697.7	gi|564290583|ref|YP_008876890.1|	-	0.016	15.8	0.8	0.041	14.5	0.8	1.6	1	1	0	1	1	1	0	Alpha/beta	hydrolase	family
Ser_hydrolase	PF06821.13	gi|564290583|ref|YP_008876890.1|	-	0.09	12.6	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Serine	hydrolase
LIDHydrolase	PF10230.9	gi|564290583|ref|YP_008876890.1|	-	0.11	12.0	0.0	0.17	11.4	0.0	1.1	1	0	0	1	1	1	0	Lipid-droplet	associated	hydrolase
Lipase	PF00151.19	gi|564290583|ref|YP_008876890.1|	-	0.13	11.5	0.0	0.29	10.4	0.0	1.5	1	1	0	1	1	1	0	Lipase
TFIIB	PF00382.19	gi|564290584|ref|YP_008876891.1|	-	6e-39	131.9	0.7	1.2e-18	66.9	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564290584|ref|YP_008876891.1|	-	1.7e-15	56.2	4.5	2.2e-15	55.9	3.5	1.8	2	0	0	2	2	2	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.16	gi|564290584|ref|YP_008876891.1|	-	0.054	13.0	2.8	0.31	10.6	0.0	3.3	4	0	0	4	4	4	0	Sigma-70,	region	4
Cyclin_C	PF02984.19	gi|564290584|ref|YP_008876891.1|	-	0.062	13.4	0.0	0.82	9.8	0.0	2.2	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
Anti-TRAP	PF15777.5	gi|564290584|ref|YP_008876891.1|	-	0.063	13.2	0.5	0.11	12.4	0.5	1.4	1	0	0	1	1	1	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
HTH_Tnp_ISL3	PF13542.6	gi|564290584|ref|YP_008876891.1|	-	0.13	11.7	1.1	0.29	10.6	0.2	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
A2L_zn_ribbon	PF08792.10	gi|564290584|ref|YP_008876891.1|	-	0.15	11.8	0.7	0.28	10.9	0.7	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564290584|ref|YP_008876891.1|	-	0.2	11.6	1.2	0.43	10.5	1.2	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.10	gi|564290584|ref|YP_008876891.1|	-	2.4	8.3	6.2	5.5	7.2	1.2	2.4	1	1	2	3	3	3	0	Zinc	ribbon	domain
Nop25	PF09805.9	gi|564290584|ref|YP_008876891.1|	-	3.6	8.1	8.1	2.2	8.8	0.2	2.7	3	0	0	3	3	3	0	Nucleolar	protein	12	(25kDa)
N6_N4_Mtase	PF01555.18	gi|564290585|ref|YP_008876892.1|	-	7.2e-31	107.7	0.0	9.5e-31	107.3	0.0	1.2	1	0	0	1	1	1	1	DNA	methylase
Methyltransf_11	PF08241.12	gi|564290585|ref|YP_008876892.1|	-	2.4e-06	28.1	0.1	0.38	11.4	0.0	3.3	3	0	0	3	3	3	2	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564290585|ref|YP_008876892.1|	-	0.0001	22.9	0.1	0.86	10.4	0.0	3.8	3	1	0	3	3	3	1	Methyltransferase	domain
UPF0020	PF01170.18	gi|564290585|ref|YP_008876892.1|	-	0.0011	18.7	0.1	1.4	8.6	0.0	2.4	2	1	0	2	2	2	2	Putative	RNA	methylase	family	UPF0020
CHB_HEX_C_1	PF13290.6	gi|564290585|ref|YP_008876892.1|	-	0.15	12.1	0.1	0.72	9.9	0.1	1.9	2	0	0	2	2	2	0	Chitobiase/beta-hexosaminidase	C-terminal	domain
DHquinase_I	PF01487.15	gi|564290586|ref|YP_008876893.1|	-	2.1e-43	149.2	0.0	2.4e-43	149.0	0.0	1.0	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
zinc_ribbon_2	PF13240.6	gi|564290587|ref|YP_008876894.1|	-	1.3e-05	24.7	1.0	2e-05	24.1	1.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
TM2	PF05154.16	gi|564290587|ref|YP_008876894.1|	-	1.9e-05	24.9	5.7	2.8e-05	24.3	5.7	1.3	1	0	0	1	1	1	1	TM2	domain
DZR	PF12773.7	gi|564290587|ref|YP_008876894.1|	-	2e-05	24.5	1.7	2.8e-05	24.1	1.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564290587|ref|YP_008876894.1|	-	0.00095	18.5	1.0	0.0015	17.8	1.0	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|564290587|ref|YP_008876894.1|	-	0.002	18.8	0.2	0.0027	18.4	0.2	1.2	1	0	0	1	1	1	1	zinc-ribbon	family
DUF4131	PF13567.6	gi|564290587|ref|YP_008876894.1|	-	0.012	15.3	0.2	0.014	15.0	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
DUF2614	PF11023.8	gi|564290587|ref|YP_008876894.1|	-	0.014	15.5	0.8	0.27	11.3	0.0	2.1	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
DUF2628	PF10947.8	gi|564290587|ref|YP_008876894.1|	-	0.024	15.0	3.4	0.033	14.5	3.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
NinF	PF05810.12	gi|564290587|ref|YP_008876894.1|	-	0.056	13.3	0.2	0.12	12.2	0.2	1.6	1	1	0	1	1	1	0	NinF	protein
UPF0547	PF10571.9	gi|564290587|ref|YP_008876894.1|	-	0.06	13.4	0.4	0.1	12.7	0.4	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zinc-ribbons_6	PF07191.12	gi|564290587|ref|YP_008876894.1|	-	0.1	12.6	1.2	0.15	12.1	1.2	1.2	1	0	0	1	1	1	0	zinc-ribbons
HypA	PF01155.19	gi|564290587|ref|YP_008876894.1|	-	0.11	12.6	1.3	0.15	12.1	1.3	1.4	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DHQS	PF01959.16	gi|564290588|ref|YP_008876895.1|	-	2.9e-143	477.1	1.7	3.2e-143	476.9	1.7	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase	II
Hint	PF01079.20	gi|564290588|ref|YP_008876895.1|	-	0.001	18.7	0.0	0.021	14.3	0.0	2.2	2	0	0	2	2	2	1	Hint	module
Hint_2	PF13403.6	gi|564290588|ref|YP_008876895.1|	-	0.014	15.7	1.6	2.2	8.6	0.0	2.8	3	0	0	3	3	3	0	Hint	domain
QRPTase_C	PF01729.19	gi|564290588|ref|YP_008876895.1|	-	0.019	14.8	0.7	0.042	13.6	0.2	1.9	2	0	0	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
DeoC	PF01791.9	gi|564290589|ref|YP_008876896.1|	-	4.3e-49	167.3	0.1	5.4e-49	166.9	0.1	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
AP_endonuc_2	PF01261.24	gi|564290589|ref|YP_008876896.1|	-	4.5e-05	23.0	0.1	8.6e-05	22.1	0.0	1.6	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
OMPdecase	PF00215.24	gi|564290589|ref|YP_008876896.1|	-	0.0042	16.7	0.3	0.0042	16.7	0.3	1.6	2	0	0	2	2	2	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
TMP-TENI	PF02581.17	gi|564290589|ref|YP_008876896.1|	-	0.011	15.1	0.1	1.1	8.5	0.0	2.6	2	1	0	2	2	2	0	Thiamine	monophosphate	synthase
DUF561	PF04481.12	gi|564290589|ref|YP_008876896.1|	-	0.012	14.8	0.0	0.021	14.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF561)
PucR	PF07905.11	gi|564290589|ref|YP_008876896.1|	-	0.026	14.8	0.0	0.9	9.8	0.0	2.3	2	0	0	2	2	2	0	Purine	catabolism	regulatory	protein-like	family
ThiG	PF05690.14	gi|564290589|ref|YP_008876896.1|	-	0.036	13.4	0.6	0.079	12.3	0.2	1.7	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
RuvA_C	PF07499.13	gi|564290589|ref|YP_008876896.1|	-	0.064	13.7	1.8	0.28	11.6	0.8	2.5	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
Trp_syntA	PF00290.20	gi|564290590|ref|YP_008876897.1|	-	1.1e-86	289.8	0.1	4.8e-86	287.8	0.1	1.7	1	1	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.21	gi|564290590|ref|YP_008876897.1|	-	0.00019	21.0	0.1	0.00038	20.0	0.1	1.5	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PcrB	PF01884.17	gi|564290590|ref|YP_008876897.1|	-	0.00023	20.7	0.3	0.0055	16.2	0.3	2.1	2	0	0	2	2	2	1	PcrB	family
NanE	PF04131.14	gi|564290590|ref|YP_008876897.1|	-	0.14	11.4	0.1	0.71	9.0	0.0	2.0	2	0	0	2	2	2	0	Putative	N-acetylmannosamine-6-phosphate	epimerase
IGPS	PF00218.21	gi|564290590|ref|YP_008876897.1|	-	0.21	10.7	0.0	0.29	10.3	0.0	1.2	1	0	0	1	1	1	0	Indole-3-glycerol	phosphate	synthase
PALP	PF00291.25	gi|564290591|ref|YP_008876898.1|	-	2.2e-37	129.1	0.2	3e-37	128.6	0.2	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
IGPS	PF00218.21	gi|564290592|ref|YP_008876899.1|	-	7.7e-69	231.7	0.0	8.4e-69	231.5	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
QRPTase_C	PF01729.19	gi|564290592|ref|YP_008876899.1|	-	1.4e-05	24.9	0.1	2.7e-05	24.0	0.1	1.5	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
NanE	PF04131.14	gi|564290592|ref|YP_008876899.1|	-	2.7e-05	23.5	0.4	6.2e-05	22.3	0.4	1.7	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
FMN_dh	PF01070.18	gi|564290592|ref|YP_008876899.1|	-	0.00018	20.7	2.7	0.00024	20.3	1.9	1.6	2	0	0	2	2	2	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|564290592|ref|YP_008876899.1|	-	0.0012	18.4	0.1	0.0071	15.8	0.1	2.1	2	1	0	2	2	2	1	Histidine	biosynthesis	protein
ThiG	PF05690.14	gi|564290592|ref|YP_008876899.1|	-	0.0022	17.4	5.6	0.13	11.5	0.5	3.5	1	1	3	4	4	4	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|564290592|ref|YP_008876899.1|	-	0.0096	15.3	6.1	0.07	12.5	4.1	2.2	2	1	0	2	2	2	1	Nitronate	monooxygenase
IMPDH	PF00478.25	gi|564290592|ref|YP_008876899.1|	-	0.022	13.8	0.4	0.092	11.7	0.1	2.0	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
PDZ	PF00595.24	gi|564290592|ref|YP_008876899.1|	-	0.042	14.2	0.1	0.14	12.5	0.0	1.8	2	0	0	2	2	2	0	PDZ	domain
DHO_dh	PF01180.21	gi|564290592|ref|YP_008876899.1|	-	0.045	13.0	0.1	0.066	12.4	0.1	1.3	1	0	0	1	1	1	0	Dihydroorotate	dehydrogenase
DUF2064	PF09837.9	gi|564290592|ref|YP_008876899.1|	-	0.26	11.1	2.0	4.5	7.1	0.2	2.7	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
Acetyltransf_1	PF00583.25	gi|564290593|ref|YP_008876900.1|	-	3.4e-10	40.2	0.1	4.4e-10	39.8	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564290593|ref|YP_008876900.1|	-	1.2e-08	35.0	0.0	1.7e-08	34.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564290593|ref|YP_008876900.1|	-	3.2e-07	30.7	0.0	4.8e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564290593|ref|YP_008876900.1|	-	0.00033	21.3	0.0	0.00043	21.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.7	gi|564290593|ref|YP_008876900.1|	-	0.0095	16.1	0.0	0.012	15.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
MMR_HSR1_C	PF08438.10	gi|564290594|ref|YP_008876901.1|	-	7.3e-28	97.4	0.0	1.2e-27	96.7	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.23	gi|564290594|ref|YP_008876901.1|	-	1.2e-19	70.4	0.0	9.1e-19	67.6	0.0	2.2	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.21	gi|564290594|ref|YP_008876901.1|	-	8.3e-10	38.6	0.0	1.9e-09	37.4	0.0	1.7	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.18	gi|564290594|ref|YP_008876901.1|	-	2.5e-05	23.8	0.0	0.00017	21.2	0.0	2.3	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
PhetRS_B1	PF18262.1	gi|564290594|ref|YP_008876901.1|	-	0.087	13.1	0.2	0.3	11.3	0.1	1.9	2	0	0	2	2	2	0	Phe-tRNA	synthetase	beta	subunit	B1	domain
YchF-GTPase_C	PF06071.13	gi|564290594|ref|YP_008876901.1|	-	0.12	12.6	0.0	0.25	11.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF933)
DUF5331	PF17265.2	gi|564290594|ref|YP_008876901.1|	-	0.13	12.0	0.0	0.3	10.8	0.0	1.5	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5331)
MeaB	PF03308.16	gi|564290594|ref|YP_008876901.1|	-	0.15	11.0	0.0	0.24	10.3	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Dynamin_N	PF00350.23	gi|564290594|ref|YP_008876901.1|	-	0.22	11.6	0.0	1	9.4	0.0	2.0	2	0	0	2	2	2	0	Dynamin	family
MCPsignal	PF00015.21	gi|564290595|ref|YP_008876902.1|	-	1.7e-40	138.7	54.5	4.7e-40	137.2	24.1	4.7	1	1	4	5	5	5	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF2892	PF11127.8	gi|564290595|ref|YP_008876902.1|	-	7.3e-05	22.7	3.2	0.00017	21.6	3.2	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
BLOC1_2	PF10046.9	gi|564290595|ref|YP_008876902.1|	-	0.0013	19.0	24.2	3.1	8.2	1.0	6.1	4	3	2	6	6	6	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
T3SSipB	PF16535.5	gi|564290595|ref|YP_008876902.1|	-	0.0013	19.2	39.1	0.083	13.4	15.2	3.7	3	1	0	3	3	3	2	Type	III	cell	invasion	protein	SipB
DUF948	PF06103.11	gi|564290595|ref|YP_008876902.1|	-	0.0063	16.7	39.1	1.6	9.0	3.6	6.8	3	2	4	7	7	7	3	Bacterial	protein	of	unknown	function	(DUF948)
23S_rRNA_IVP	PF05635.11	gi|564290595|ref|YP_008876902.1|	-	0.01	16.1	6.0	0.027	14.7	1.4	2.9	2	1	0	2	2	2	0	23S	rRNA-intervening	sequence	protein
YscO	PF07321.12	gi|564290595|ref|YP_008876902.1|	-	0.011	15.7	7.8	0.011	15.7	7.8	3.3	3	1	0	3	3	3	0	Type	III	secretion	protein	YscO
Alanine_zipper	PF11839.8	gi|564290595|ref|YP_008876902.1|	-	0.027	14.8	12.7	0.027	14.8	12.7	6.0	3	2	3	6	6	5	0	Alanine-zipper,	major	outer	membrane	lipoprotein
HAMP	PF00672.25	gi|564290595|ref|YP_008876902.1|	-	0.037	14.4	12.7	3.5	8.1	0.1	4.9	5	0	0	5	5	3	0	HAMP	domain
RPW8	PF05659.11	gi|564290595|ref|YP_008876902.1|	-	0.18	11.5	7.5	20	4.9	0.1	4.8	3	2	3	6	6	5	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
COQ9	PF08511.11	gi|564290595|ref|YP_008876902.1|	-	0.19	11.5	5.0	0.21	11.4	0.3	3.4	3	0	0	3	3	3	0	COQ9
APG17	PF04108.12	gi|564290595|ref|YP_008876902.1|	-	0.22	10.6	30.7	0.16	11.1	0.1	4.8	3	1	2	6	6	6	0	Autophagy	protein	Apg17
DUF775	PF05603.12	gi|564290595|ref|YP_008876902.1|	-	0.25	10.9	0.0	0.25	10.9	0.0	2.5	2	1	0	2	2	1	0	Protein	of	unknown	function	(DUF775)
Med9	PF07544.13	gi|564290595|ref|YP_008876902.1|	-	0.31	11.2	12.1	0.31	11.2	0.5	4.5	3	1	1	4	4	4	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Fib_alpha	PF08702.10	gi|564290595|ref|YP_008876902.1|	-	0.46	10.7	18.0	3.8	7.7	2.2	4.7	3	2	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
BORCS8	PF10167.9	gi|564290595|ref|YP_008876902.1|	-	0.57	10.1	7.7	15	5.6	0.1	4.4	3	2	1	5	5	4	0	BLOC-1-related	complex	sub-unit	8
Baculo_PEP_C	PF04513.12	gi|564290595|ref|YP_008876902.1|	-	0.69	9.9	26.7	0.69	10.0	3.9	4.4	1	1	3	4	4	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Spc7	PF08317.11	gi|564290595|ref|YP_008876902.1|	-	0.73	8.6	27.4	0.66	8.8	7.7	3.2	1	1	2	3	3	3	0	Spc7	kinetochore	protein
Laminin_II	PF06009.12	gi|564290595|ref|YP_008876902.1|	-	0.82	9.7	33.2	0.75	9.8	5.0	5.7	1	1	5	7	7	7	0	Laminin	Domain	II
DUF489	PF04356.12	gi|564290595|ref|YP_008876902.1|	-	0.95	9.4	6.3	3	7.8	0.4	2.9	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
EzrA	PF06160.12	gi|564290595|ref|YP_008876902.1|	-	1.1	7.4	19.9	0.043	12.0	3.3	3.3	1	1	0	3	3	3	0	Septation	ring	formation	regulator,	EzrA
DUF724	PF05266.14	gi|564290595|ref|YP_008876902.1|	-	1.2	8.9	13.3	4.1	7.2	3.0	3.2	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF724)
CclA_1	PF16942.5	gi|564290595|ref|YP_008876902.1|	-	1.3	9.4	4.4	0.39	11.0	0.3	2.2	2	0	0	2	2	1	0	Putative	cyclic	bacteriocin
AAA_13	PF13166.6	gi|564290595|ref|YP_008876902.1|	-	1.4	7.5	22.6	0.49	9.0	6.3	2.2	1	1	1	2	2	2	0	AAA	domain
ClpS	PF02617.17	gi|564290595|ref|YP_008876902.1|	-	1.5	8.7	6.8	0.16	11.8	0.2	2.9	3	0	0	3	3	2	0	ATP-dependent	Clp	protease	adaptor	protein	ClpS
DHR10	PF18595.1	gi|564290595|ref|YP_008876902.1|	-	1.8	8.7	29.6	0.5	10.4	6.2	4.6	3	2	1	4	4	4	0	Designed	helical	repeat	protein	10	domain
TPR_MLP1_2	PF07926.12	gi|564290595|ref|YP_008876902.1|	-	2.4	8.2	39.5	2.4	8.2	5.8	4.7	2	1	4	6	6	6	0	TPR/MLP1/MLP2-like	protein
TMPIT	PF07851.13	gi|564290595|ref|YP_008876902.1|	-	2.8	7.1	11.9	1.6	7.9	1.8	3.5	2	1	2	4	4	4	0	TMPIT-like	protein
ZapB	PF06005.12	gi|564290595|ref|YP_008876902.1|	-	2.9	8.4	10.0	28	5.3	3.7	3.8	2	1	0	2	2	2	0	Cell	division	protein	ZapB
ERM	PF00769.19	gi|564290595|ref|YP_008876902.1|	-	3.2	7.5	36.3	0.8	9.5	0.0	3.4	1	1	3	4	4	4	0	Ezrin/radixin/moesin	family
Syntaxin_2	PF14523.6	gi|564290595|ref|YP_008876902.1|	-	3.2	8.2	13.5	7.1	7.1	2.7	4.5	3	2	2	5	5	5	0	Syntaxin-like	protein
YtxH	PF12732.7	gi|564290595|ref|YP_008876902.1|	-	4.2	8.0	32.1	18	6.0	4.1	5.9	3	2	1	4	4	4	0	YtxH-like	protein
DUF16	PF01519.16	gi|564290595|ref|YP_008876902.1|	-	4.5	7.8	14.4	53	4.4	0.0	4.8	2	1	0	3	3	3	0	Protein	of	unknown	function	DUF16
DUF2203	PF09969.9	gi|564290595|ref|YP_008876902.1|	-	4.5	8.0	22.5	3.9	8.2	2.7	4.6	2	1	4	6	6	6	0	Uncharacterized	conserved	protein	(DUF2203)
PIN_8	PF18476.1	gi|564290595|ref|YP_008876902.1|	-	6.7	6.5	17.1	6.5	6.5	4.4	3.3	2	1	1	3	3	3	0	PIN	like	domain
Atg14	PF10186.9	gi|564290595|ref|YP_008876902.1|	-	9.1	5.3	12.7	1.2	8.1	0.5	2.7	2	1	1	3	3	3	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DUF1949	PF09186.11	gi|564290596|ref|YP_008876903.1|	-	0.099	12.5	0.2	0.27	11.1	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1949)
Thioredoxin_4	PF13462.6	gi|564290598|ref|YP_008876905.1|	-	3.5e-14	53.3	0.0	4.4e-14	53.0	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564290598|ref|YP_008876905.1|	-	7e-06	26.4	0.1	9.4e-05	22.8	0.1	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
DSBA	PF01323.20	gi|564290598|ref|YP_008876905.1|	-	0.00012	22.0	0.2	0.00019	21.3	0.2	1.3	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
TAT_signal	PF10518.9	gi|564290598|ref|YP_008876905.1|	-	0.042	13.7	0.3	0.085	12.7	0.3	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Thioredoxin_5	PF13743.6	gi|564290598|ref|YP_008876905.1|	-	0.077	12.7	0.8	0.17	11.5	0.1	1.8	2	0	0	2	2	2	0	Thioredoxin
DUF1376	PF07120.11	gi|564290598|ref|YP_008876905.1|	-	0.1	12.9	0.0	0.17	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1376)
Thioredoxin_7	PF13899.6	gi|564290598|ref|YP_008876905.1|	-	0.16	12.2	0.0	0.36	11.1	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin-like
UCR_Fe-S_N	PF10399.9	gi|564290598|ref|YP_008876905.1|	-	0.19	11.1	1.7	0.34	10.3	1.7	1.4	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
RHH_1	PF01402.21	gi|564290599|ref|YP_008876906.1|	-	0.013	15.4	1.7	0.046	13.7	1.3	2.1	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
YpzI	PF14140.6	gi|564290599|ref|YP_008876906.1|	-	0.084	12.7	0.1	0.17	11.7	0.1	1.4	1	0	0	1	1	1	0	YpzI-like	protein
zf-HC2	PF13490.6	gi|564290599|ref|YP_008876906.1|	-	0.097	12.9	0.3	0.097	12.9	0.3	2.3	2	0	0	2	2	2	0	Putative	zinc-finger
PSK_trans_fac	PF07704.11	gi|564290599|ref|YP_008876906.1|	-	0.17	12.6	3.6	0.25	12.1	3.6	1.3	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
PIN_4	PF13638.6	gi|564290600|ref|YP_008876907.1|	-	0.097	13.0	0.2	5.1	7.4	0.0	2.2	1	1	1	2	2	2	0	PIN	domain
OpuAC	PF04069.12	gi|564290601|ref|YP_008876908.1|	-	1.9e-39	135.8	1.1	2.6e-39	135.4	1.1	1.0	1	0	0	1	1	1	1	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
MCPsignal	PF00015.21	gi|564290602|ref|YP_008876909.1|	-	2e-38	131.9	25.1	2e-38	131.9	25.1	5.5	2	2	3	5	5	5	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|564290602|ref|YP_008876909.1|	-	3.4e-11	43.4	10.6	2.4e-08	34.2	0.1	5.0	4	0	0	4	4	4	2	HAMP	domain
dCache_1	PF02743.18	gi|564290602|ref|YP_008876909.1|	-	0.00047	20.0	0.2	0.00047	20.0	0.2	4.4	3	1	1	4	4	4	1	Cache	domain
Mod_r	PF07200.13	gi|564290602|ref|YP_008876909.1|	-	0.77	9.9	33.7	1.1	9.4	6.7	4.4	2	1	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF2779	PF11074.8	gi|564290602|ref|YP_008876909.1|	-	0.8	10.2	2.7	50	4.4	0.1	3.6	3	1	0	3	3	3	0	Domain	of	unknown	function(DUF2779)
SCO1-SenC	PF02630.14	gi|564290602|ref|YP_008876909.1|	-	0.94	9.4	7.0	2	8.3	0.0	3.9	1	1	3	5	5	5	0	SCO1/SenC
Laminin_II	PF06009.12	gi|564290602|ref|YP_008876909.1|	-	2.5	8.1	44.8	0.058	13.4	8.0	5.6	3	2	2	5	5	5	0	Laminin	Domain	II
DASH_Dam1	PF08653.10	gi|564290602|ref|YP_008876909.1|	-	7	6.5	6.3	27	4.6	0.1	4.1	5	0	0	5	5	5	0	DASH	complex	subunit	Dam1
HTH_10	PF04967.12	gi|564290603|ref|YP_008876910.1|	-	1.5e-11	43.9	0.1	2.3e-11	43.3	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564290603|ref|YP_008876910.1|	-	2.5e-09	37.2	5.6	2.5e-09	37.2	5.6	1.7	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
MCRA	PF06100.11	gi|564290604|ref|YP_008876911.1|	-	4.5e-210	698.6	0.0	5.1e-210	698.5	0.0	1.0	1	0	0	1	1	1	1	MCRA	family
NAD_binding_8	PF13450.6	gi|564290604|ref|YP_008876911.1|	-	1.4e-06	28.4	0.1	3.3e-06	27.2	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564290604|ref|YP_008876911.1|	-	0.0032	17.1	0.2	0.037	13.6	0.1	2.3	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
DUF21	PF01595.20	gi|564290605|ref|YP_008876912.1|	-	2.6e-46	157.5	1.3	3.7e-46	157.0	1.3	1.1	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|564290605|ref|YP_008876912.1|	-	1.1e-21	76.6	0.1	3.9e-21	74.9	0.1	2.0	1	0	0	1	1	1	1	Transporter	associated	domain
CBS	PF00571.28	gi|564290605|ref|YP_008876912.1|	-	6.6e-14	52.1	4.0	1.1e-08	35.4	1.3	2.5	2	0	0	2	2	2	2	CBS	domain
Acetyltransf_9	PF13527.7	gi|564290606|ref|YP_008876913.1|	-	9.7e-26	90.3	0.0	2.6e-25	89.0	0.0	1.7	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_17	PF17668.1	gi|564290606|ref|YP_008876913.1|	-	1e-24	87.6	1.0	3.1e-24	86.0	1.0	1.9	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
SCP2_2	PF13530.6	gi|564290606|ref|YP_008876913.1|	-	5.6e-13	49.2	0.0	1.1e-12	48.3	0.0	1.4	1	0	0	1	1	1	1	Sterol	carrier	protein	domain
Acetyltransf_1	PF00583.25	gi|564290606|ref|YP_008876913.1|	-	8.8e-06	25.9	0.0	0.00085	19.5	0.0	2.3	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564290606|ref|YP_008876913.1|	-	5.2e-05	23.6	0.0	0.00011	22.6	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564290606|ref|YP_008876913.1|	-	0.00088	19.2	0.0	0.0016	18.3	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564290606|ref|YP_008876913.1|	-	0.0011	19.0	0.0	0.0024	17.9	0.0	1.5	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
FR47	PF08445.10	gi|564290606|ref|YP_008876913.1|	-	0.004	17.1	0.0	0.0097	15.9	0.0	1.6	1	1	0	1	1	1	1	FR47-like	protein
BCD	PF15461.6	gi|564290607|ref|YP_008876914.1|	-	3.6e-74	249.6	17.2	3.6e-74	249.6	17.2	1.5	2	0	0	2	2	2	1	Beta-carotene	15,15'-dioxygenase
UPF0220	PF05255.11	gi|564290607|ref|YP_008876914.1|	-	0.16	11.5	2.7	0.34	10.4	0.1	2.6	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0220)
Amino_oxidase	PF01593.24	gi|564290608|ref|YP_008876915.1|	-	1.9e-30	106.6	0.1	2.3e-30	106.3	0.1	1.1	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|564290608|ref|YP_008876915.1|	-	2.6e-16	59.6	0.4	7.5e-16	58.1	0.4	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564290608|ref|YP_008876915.1|	-	1.6e-10	41.1	7.8	8e-10	38.8	7.8	2.1	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.27	gi|564290608|ref|YP_008876915.1|	-	5.1e-08	33.4	2.2	2e-05	25.0	0.4	3.4	4	0	0	4	4	4	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564290608|ref|YP_008876915.1|	-	1.5e-07	31.0	1.3	6.6e-05	22.3	0.1	2.7	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564290608|ref|YP_008876915.1|	-	8.4e-07	28.7	0.0	3.1e-06	26.8	0.0	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564290608|ref|YP_008876915.1|	-	3.2e-05	23.4	0.2	0.12	11.6	0.0	2.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564290608|ref|YP_008876915.1|	-	4.3e-05	22.8	2.0	8.8e-05	21.7	1.5	1.7	2	0	0	2	2	2	1	FAD	binding	domain
FAD_binding_3	PF01494.19	gi|564290608|ref|YP_008876915.1|	-	6.3e-05	22.4	0.6	0.00013	21.4	0.6	1.5	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|564290608|ref|YP_008876915.1|	-	6.8e-05	21.7	0.0	0.023	13.4	0.2	2.1	2	0	0	2	2	2	2	HI0933-like	protein
GIDA	PF01134.22	gi|564290608|ref|YP_008876915.1|	-	0.0011	18.1	1.1	0.0018	17.5	1.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|564290608|ref|YP_008876915.1|	-	0.0051	16.1	0.1	0.0097	15.2	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
MCRA	PF06100.11	gi|564290608|ref|YP_008876915.1|	-	0.046	12.5	0.0	0.075	11.8	0.0	1.3	1	0	0	1	1	1	0	MCRA	family
AlaDh_PNT_C	PF01262.21	gi|564290608|ref|YP_008876915.1|	-	0.11	11.8	0.1	0.19	11.0	0.1	1.3	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.18	gi|564290608|ref|YP_008876915.1|	-	0.23	11.3	0.4	0.42	10.5	0.4	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pribosyltran	PF00156.27	gi|564290609|ref|YP_008876916.1|	-	2.5e-16	59.6	0.8	3.7e-16	59.0	0.8	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|564290609|ref|YP_008876916.1|	-	0.0014	18.2	0.0	0.0018	17.7	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|564290609|ref|YP_008876916.1|	-	0.015	14.8	0.3	0.035	13.6	0.3	1.6	1	1	0	1	1	1	0	Phosphoribosyl	transferase
LETM1	PF07766.13	gi|564290610|ref|YP_008876917.1|	-	0.085	12.2	0.0	0.099	12.0	0.0	1.3	1	0	0	1	1	1	0	LETM1-like	protein
DsbB	PF02600.16	gi|564290611|ref|YP_008876918.1|	-	4.6e-17	62.8	12.2	1.3e-16	61.4	12.2	1.6	1	1	0	1	1	1	1	Disulfide	bond	formation	protein	DsbB
SLATT_1	PF18181.1	gi|564290611|ref|YP_008876918.1|	-	0.52	10.3	2.1	4.5	7.2	0.4	2.4	2	1	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	1
Aldo_ket_red	PF00248.21	gi|564290612|ref|YP_008876919.1|	-	1.4e-71	241.1	0.0	1.6e-71	240.9	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Terminase_1	PF03354.15	gi|564290612|ref|YP_008876919.1|	-	0.02	13.4	0.0	0.03	12.9	0.0	1.1	1	0	0	1	1	1	0	Phage	Terminase
MFS_1	PF07690.16	gi|564290613|ref|YP_008876920.1|	-	1.9e-12	46.8	30.6	1.9e-12	46.8	30.6	2.1	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564290613|ref|YP_008876920.1|	-	0.0067	15.3	0.6	0.0067	15.3	0.6	2.4	2	2	0	2	2	2	1	MFS_1	like	family
Sugar_tr	PF00083.24	gi|564290613|ref|YP_008876920.1|	-	0.011	14.7	2.5	0.011	14.7	2.5	2.7	3	0	0	3	3	3	0	Sugar	(and	other)	transporter
LacY_symp	PF01306.19	gi|564290613|ref|YP_008876920.1|	-	0.018	13.8	4.2	0.044	12.5	1.7	2.2	2	0	0	2	2	2	0	LacY	proton/sugar	symporter
UPF0227	PF05728.12	gi|564290613|ref|YP_008876920.1|	-	0.27	11.1	0.1	0.51	10.3	0.1	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
HhH-GPD	PF00730.25	gi|564290614|ref|YP_008876921.1|	-	3.2e-20	72.6	0.0	4.6e-20	72.1	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
EndIII_4Fe-2S	PF10576.9	gi|564290614|ref|YP_008876921.1|	-	0.00028	21.1	7.2	0.00069	19.9	7.2	1.7	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH	PF00633.23	gi|564290614|ref|YP_008876921.1|	-	0.0062	16.3	0.0	0.023	14.5	0.0	2.0	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH_5	PF14520.6	gi|564290614|ref|YP_008876921.1|	-	0.027	15.1	0.1	0.4	11.3	0.0	2.6	1	1	1	2	2	2	0	Helix-hairpin-helix	domain
DUF732	PF05305.14	gi|564290614|ref|YP_008876921.1|	-	0.044	14.2	0.2	0.12	12.8	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF732)
DUF2400	PF09674.10	gi|564290614|ref|YP_008876921.1|	-	0.062	13.3	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2400)
DUF5059	PF16502.5	gi|564290615|ref|YP_008876922.1|	-	4.1e-267	888.0	106.0	5.5e-267	887.5	106.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5059)
Copper-bind	PF00127.20	gi|564290615|ref|YP_008876922.1|	-	3.7e-14	53.0	0.1	1.2e-13	51.3	0.1	2.0	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
APP_E2	PF12925.7	gi|564290615|ref|YP_008876922.1|	-	0.027	14.2	1.0	2.1	8.0	0.4	2.6	3	0	0	3	3	3	0	E2	domain	of	amyloid	precursor	protein
TAT_signal	PF10518.9	gi|564290615|ref|YP_008876922.1|	-	0.23	11.4	0.0	0.23	11.4	0.0	4.9	5	0	0	5	5	5	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PRTP	PF01366.18	gi|564290615|ref|YP_008876922.1|	-	0.27	9.2	5.1	3.6	5.5	0.2	2.4	2	0	0	2	2	2	0	Herpesvirus	processing	and	transport	protein
SAM_adeno_trans	PF01887.16	gi|564290616|ref|YP_008876923.1|	-	2.2e-76	256.4	1.2	2.4e-76	256.2	1.2	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
CTP_transf_like	PF01467.26	gi|564290617|ref|YP_008876924.1|	-	2.2e-15	57.1	0.0	4.7e-15	56.0	0.0	1.5	1	1	0	1	1	1	1	Cytidylyltransferase-like
Citrate_ly_lig	PF08218.11	gi|564290617|ref|YP_008876924.1|	-	0.019	14.7	0.0	0.046	13.4	0.0	1.6	1	1	0	1	1	1	0	Citrate	lyase	ligase	C-terminal	domain
Lon_C	PF05362.13	gi|564290618|ref|YP_008876925.1|	-	4.6e-35	121.0	4.7	7.1e-35	120.4	4.7	1.3	1	0	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
AAA_32	PF13654.6	gi|564290618|ref|YP_008876925.1|	-	4.9e-30	104.8	0.0	3.4e-23	82.2	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.21	gi|564290618|ref|YP_008876925.1|	-	6.1e-18	65.0	0.1	7.9e-11	41.7	0.0	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|564290618|ref|YP_008876925.1|	-	4.2e-16	59.1	0.0	6.9e-09	35.6	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_5	PF07728.14	gi|564290618|ref|YP_008876925.1|	-	6.9e-10	39.1	0.0	0.00093	19.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
ChlI	PF13541.6	gi|564290618|ref|YP_008876925.1|	-	5e-09	36.1	0.7	1.2e-08	34.8	0.7	1.7	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
MCM	PF00493.23	gi|564290618|ref|YP_008876925.1|	-	8.9e-08	31.5	0.1	0.013	14.6	0.0	2.4	2	0	0	2	2	2	2	MCM	P-loop	domain
AAA	PF00004.29	gi|564290618|ref|YP_008876925.1|	-	1.1e-06	29.1	0.0	0.042	14.3	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.6	gi|564290618|ref|YP_008876925.1|	-	1.7e-05	24.9	0.0	0.15	12.1	0.0	2.4	2	0	0	2	2	2	2	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|564290618|ref|YP_008876925.1|	-	3.9e-05	23.5	0.1	0.02	14.7	0.0	2.4	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_7	PF12775.7	gi|564290618|ref|YP_008876925.1|	-	0.00014	21.5	0.1	0.00037	20.1	0.0	1.6	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_22	PF13401.6	gi|564290618|ref|YP_008876925.1|	-	0.00026	21.3	0.0	0.0045	17.3	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_3	PF07726.11	gi|564290618|ref|YP_008876925.1|	-	0.00028	20.8	0.1	0.42	10.5	0.0	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|564290618|ref|YP_008876925.1|	-	0.00046	20.5	0.0	0.65	10.3	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|564290618|ref|YP_008876925.1|	-	0.00047	19.5	1.8	0.1	11.8	0.0	2.9	4	0	0	4	4	4	1	TIP49	P-loop	domain
AAA_30	PF13604.6	gi|564290618|ref|YP_008876925.1|	-	0.00096	18.9	0.0	0.073	12.8	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_PrkA	PF08298.11	gi|564290618|ref|YP_008876925.1|	-	0.0039	16.2	0.0	0.22	10.4	0.0	2.2	2	0	0	2	2	2	1	PrkA	AAA	domain
T2SSE	PF00437.20	gi|564290618|ref|YP_008876925.1|	-	0.0098	15.0	0.2	0.11	11.5	0.0	2.5	3	0	0	3	3	3	1	Type	II/IV	secretion	system	protein
PhoH	PF02562.16	gi|564290618|ref|YP_008876925.1|	-	0.014	14.9	0.0	0.029	13.8	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
AAA_33	PF13671.6	gi|564290618|ref|YP_008876925.1|	-	0.016	15.3	0.0	0.054	13.7	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.17	gi|564290618|ref|YP_008876925.1|	-	0.02	14.6	0.0	0.047	13.4	0.0	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_2	PF07724.14	gi|564290618|ref|YP_008876925.1|	-	0.021	15.0	0.4	6.1	6.9	0.0	3.2	3	0	0	3	3	3	0	AAA	domain	(Cdc48	subfamily)
DUF815	PF05673.13	gi|564290618|ref|YP_008876925.1|	-	0.021	14.0	0.0	0.044	13.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
MCM_lid	PF17855.1	gi|564290618|ref|YP_008876925.1|	-	0.022	15.2	0.4	0.11	12.9	0.0	2.2	1	1	1	2	2	2	0	MCM	AAA-lid	domain
AAA_10	PF12846.7	gi|564290618|ref|YP_008876925.1|	-	0.022	13.7	0.0	0.089	11.7	0.0	1.8	2	0	0	2	2	2	0	AAA-like	domain
ABC_tran	PF00005.27	gi|564290618|ref|YP_008876925.1|	-	0.03	14.8	0.0	0.086	13.4	0.0	1.8	1	0	0	1	1	1	0	ABC	transporter
AAA_16	PF13191.6	gi|564290618|ref|YP_008876925.1|	-	0.052	13.9	0.0	0.24	11.8	0.0	2.1	2	0	0	2	2	1	0	AAA	ATPase	domain
RHH_6	PF16762.5	gi|564290618|ref|YP_008876925.1|	-	0.07	13.8	0.3	0.92	10.2	0.0	2.9	2	0	0	2	2	2	0	Ribbon-helix-helix	domain
NACHT	PF05729.12	gi|564290618|ref|YP_008876925.1|	-	0.087	12.7	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Parvo_NS1	PF01057.17	gi|564290618|ref|YP_008876925.1|	-	0.12	11.4	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
TrwB_AAD_bind	PF10412.9	gi|564290618|ref|YP_008876925.1|	-	0.14	11.0	0.0	0.23	10.3	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF5345	PF17280.2	gi|564290618|ref|YP_008876925.1|	-	0.25	11.3	1.7	0.81	9.7	1.7	1.9	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5345)
CPBP	PF02517.16	gi|564290619|ref|YP_008876926.1|	-	9.9e-09	35.5	7.3	9.9e-09	35.5	7.3	2.4	3	0	0	3	3	3	2	CPBP	intramembrane	metalloprotease
DUF5118	PF17162.4	gi|564290619|ref|YP_008876926.1|	-	0.0044	16.8	0.0	0.0077	16.0	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5118)
DNA_binding_1	PF01035.20	gi|564290620|ref|YP_008876927.1|	-	5e-09	36.2	0.0	8.2e-09	35.5	0.0	1.2	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
GDPD	PF03009.17	gi|564290621|ref|YP_008876928.1|	-	2.3e-20	73.4	0.0	5.6e-20	72.2	0.0	1.7	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.6	gi|564290621|ref|YP_008876928.1|	-	0.00027	21.3	0.1	0.00087	19.7	0.1	1.9	1	0	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
TAT_signal	PF10518.9	gi|564290621|ref|YP_008876928.1|	-	0.16	11.9	4.0	0.41	10.6	4.0	1.8	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DS	PF01916.17	gi|564290622|ref|YP_008876929.1|	-	2.2e-99	332.3	0.0	2.5e-99	332.2	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
Peptidase_M22	PF00814.25	gi|564290622|ref|YP_008876929.1|	-	0.098	12.3	0.0	0.14	11.9	0.0	1.2	1	0	0	1	1	1	0	Glycoprotease	family
AzlC	PF03591.14	gi|564290623|ref|YP_008876930.1|	-	5e-38	130.6	11.1	5e-38	130.6	11.1	1.7	2	0	0	2	2	2	1	AzlC	protein
AzlD	PF05437.12	gi|564290624|ref|YP_008876931.1|	-	2.3e-20	72.6	8.3	2.5e-20	72.5	8.3	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	protein	(AzlD)
SprT-like	PF10263.9	gi|564290625|ref|YP_008876932.1|	-	1.5e-05	24.8	0.0	1.9e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	SprT-like	family
DUF4157	PF13699.6	gi|564290625|ref|YP_008876932.1|	-	0.057	13.7	0.9	0.12	12.6	0.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4157)
NIF3	PF01784.18	gi|564290626|ref|YP_008876933.1|	-	8.7e-57	192.6	0.0	1e-56	192.4	0.0	1.0	1	0	0	1	1	1	1	NIF3	(NGG1p	interacting	factor	3)
AP_endonuc_2	PF01261.24	gi|564290626|ref|YP_008876933.1|	-	0.0094	15.4	0.2	0.012	15.1	0.2	1.5	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Glyoxalase_4	PF13669.6	gi|564290626|ref|YP_008876933.1|	-	0.058	13.7	0.4	0.4	11.0	0.1	2.2	2	1	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
SelB-wing_2	PF09106.11	gi|564290627|ref|YP_008876934.1|	-	0.11	12.8	0.0	0.23	11.7	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	SelB,	winged	helix
HNH_5	PF14279.6	gi|564290627|ref|YP_008876934.1|	-	0.14	12.1	0.0	0.24	11.3	0.0	1.4	1	0	0	1	1	1	0	HNH	endonuclease
Abhydrolase_6	PF12697.7	gi|564290628|ref|YP_008876935.1|	-	9.6e-24	85.2	13.3	9.6e-24	85.2	13.3	1.7	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|564290628|ref|YP_008876935.1|	-	2e-16	60.5	0.0	1.7e-15	57.3	0.0	2.0	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564290628|ref|YP_008876935.1|	-	3.3e-08	33.1	0.0	7.1e-07	28.7	0.0	2.2	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Amidohydro_1	PF01979.20	gi|564290629|ref|YP_008876936.1|	-	2.5e-31	109.3	0.8	1.6e-29	103.3	0.8	2.6	1	1	0	1	1	1	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|564290629|ref|YP_008876936.1|	-	6.6e-09	35.5	0.0	8.7e-09	35.1	0.0	1.2	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_3	PF07969.11	gi|564290629|ref|YP_008876936.1|	-	5.7e-07	29.4	9.7	1.9e-05	24.3	4.7	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
Peptidase_U32	PF01136.19	gi|564290629|ref|YP_008876936.1|	-	0.023	13.8	0.0	0.043	13.0	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	U32
Arginase	PF00491.21	gi|564290630|ref|YP_008876937.1|	-	5.7e-57	193.3	1.2	7.2e-57	193.0	1.2	1.1	1	0	0	1	1	1	1	Arginase	family
EFP_N	PF08207.12	gi|564290631|ref|YP_008876938.1|	-	0.00076	19.5	0.0	0.0047	16.9	0.0	1.9	2	0	0	2	2	2	1	Elongation	factor	P	(EF-P)	KOW-like	domain
Hydrolase	PF00702.26	gi|564290632|ref|YP_008876939.1|	-	2.4e-07	31.3	0.4	4.2e-07	30.5	0.4	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564290632|ref|YP_008876939.1|	-	9.9e-07	29.0	0.0	1.1e-06	28.9	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564290632|ref|YP_008876939.1|	-	0.0001	22.3	0.1	0.00036	20.5	0.1	2.0	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|564290632|ref|YP_008876939.1|	-	0.00076	19.9	0.3	0.00096	19.6	0.3	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
DUF3235	PF11574.8	gi|564290632|ref|YP_008876939.1|	-	0.074	13.9	0.0	0.43	11.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3235)
CobD_Cbib	PF03186.13	gi|564290633|ref|YP_008876940.1|	-	7.6e-69	232.0	13.6	9.9e-69	231.6	13.6	1.1	1	0	0	1	1	1	1	CobD/Cbib	protein
CobS	PF02654.15	gi|564290634|ref|YP_008876941.1|	-	4.5e-38	131.5	20.6	5.2e-38	131.3	20.6	1.0	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
NTP_transf_3	PF12804.7	gi|564290635|ref|YP_008876942.1|	-	1.5e-20	74.1	1.3	1.9e-20	73.8	1.2	1.2	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
NTP_transferase	PF00483.23	gi|564290635|ref|YP_008876942.1|	-	8.1e-05	22.3	0.0	0.00011	21.8	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
IspD	PF01128.19	gi|564290635|ref|YP_008876942.1|	-	9.4e-05	22.3	0.0	0.00012	21.9	0.0	1.3	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CTP_transf_3	PF02348.19	gi|564290635|ref|YP_008876942.1|	-	0.025	14.5	0.0	0.074	13.0	0.0	1.7	1	1	0	1	1	1	0	Cytidylyltransferase
NAD_binding_10	PF13460.6	gi|564290635|ref|YP_008876942.1|	-	0.051	13.5	0.0	0.076	12.9	0.0	1.3	1	0	0	1	1	1	0	NAD(P)H-binding
Aminotran_1_2	PF00155.21	gi|564290636|ref|YP_008876943.1|	-	1.4e-38	133.0	0.0	1.7e-38	132.7	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
TerB	PF05099.13	gi|564290636|ref|YP_008876943.1|	-	0.041	13.9	1.1	2.6	8.0	0.3	2.2	2	0	0	2	2	2	0	Tellurite	resistance	protein	TerB
CbiZ	PF01955.18	gi|564290637|ref|YP_008876944.1|	-	2.8e-42	145.0	1.2	3.2e-42	144.8	1.2	1.0	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
CobA_CobO_BtuR	PF02572.15	gi|564290638|ref|YP_008876945.1|	-	8.1e-52	176.0	0.0	9.3e-52	175.8	0.0	1.0	1	0	0	1	1	1	1	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
CbiA	PF01656.23	gi|564290638|ref|YP_008876945.1|	-	0.16	12.0	0.1	0.26	11.3	0.1	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SatD	PF16264.5	gi|564290640|ref|YP_008876947.1|	-	2.4e-14	53.5	0.0	3.3e-14	53.0	0.0	1.2	1	0	0	1	1	1	1	SatD	family	(SatD)
UPF0122	PF04297.14	gi|564290640|ref|YP_008876947.1|	-	0.0033	17.6	0.1	0.0059	16.8	0.1	1.4	1	0	0	1	1	1	1	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
HTH_10	PF04967.12	gi|564290640|ref|YP_008876947.1|	-	0.06	13.2	0.4	0.54	10.1	0.1	2.3	2	0	0	2	2	2	0	HTH	DNA	binding	domain
GATase_3	PF07685.14	gi|564290641|ref|YP_008876948.1|	-	1.3e-45	155.4	0.0	1.8e-45	155.0	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.23	gi|564290641|ref|YP_008876948.1|	-	2.8e-22	79.1	0.0	4.3e-22	78.5	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.6	gi|564290641|ref|YP_008876948.1|	-	3.9e-18	66.0	0.0	2.9e-17	63.2	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
DUF1611	PF07755.11	gi|564290641|ref|YP_008876948.1|	-	0.071	12.4	0.0	0.94	8.7	0.1	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1611_C)	P-loop	domain
CbiA	PF01656.23	gi|564290642|ref|YP_008876949.1|	-	2.4e-17	63.2	0.0	4.5e-17	62.3	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|564290642|ref|YP_008876949.1|	-	1.1e-14	54.8	0.0	1.8e-14	54.0	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|564290642|ref|YP_008876949.1|	-	4.4e-14	52.5	1.0	3.4e-07	30.0	0.2	2.4	2	1	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
CBP_BcsQ	PF06564.12	gi|564290642|ref|YP_008876949.1|	-	2.1e-08	34.0	0.0	3e-08	33.5	0.0	1.4	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|564290642|ref|YP_008876949.1|	-	5.7e-08	32.5	0.0	6.8e-05	22.4	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|564290642|ref|YP_008876949.1|	-	0.00051	19.4	3.4	0.0037	16.6	3.4	2.0	1	1	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|564290642|ref|YP_008876949.1|	-	0.002	17.4	1.4	0.0034	16.6	0.5	1.7	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_26	PF13500.6	gi|564290642|ref|YP_008876949.1|	-	0.004	17.0	0.1	0.014	15.2	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
VirC1	PF07015.11	gi|564290642|ref|YP_008876949.1|	-	0.017	14.4	0.2	0.037	13.3	0.2	1.5	1	0	0	1	1	1	0	VirC1	protein
PIF1	PF05970.14	gi|564290642|ref|YP_008876949.1|	-	0.021	14.0	0.2	0.033	13.4	0.2	1.3	1	0	0	1	1	1	0	PIF1-like	helicase
AAA_30	PF13604.6	gi|564290642|ref|YP_008876949.1|	-	0.11	12.2	1.3	0.11	12.2	0.1	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.6	gi|564290642|ref|YP_008876949.1|	-	0.29	10.7	2.7	0.64	9.6	2.7	1.7	1	1	0	1	1	1	0	AAA	domain
HTH_11	PF08279.12	gi|564290644|ref|YP_008876951.1|	-	1.5e-06	28.0	0.0	1.9e-06	27.7	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_CodY	PF08222.11	gi|564290644|ref|YP_008876951.1|	-	3.2e-05	23.4	0.0	4.7e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	CodY	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564290644|ref|YP_008876951.1|	-	7e-05	22.8	0.0	8.7e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_17	PF12728.7	gi|564290644|ref|YP_008876951.1|	-	0.0011	19.1	0.0	0.0055	16.9	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564290644|ref|YP_008876951.1|	-	0.0031	17.0	0.0	0.0054	16.2	0.0	1.5	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.6	gi|564290644|ref|YP_008876951.1|	-	0.0082	15.9	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|564290644|ref|YP_008876951.1|	-	0.012	15.6	0.0	0.013	15.4	0.0	1.1	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
SgrR_N	PF12793.7	gi|564290644|ref|YP_008876951.1|	-	0.015	15.5	0.0	0.016	15.4	0.0	1.1	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
MarR_2	PF12802.7	gi|564290644|ref|YP_008876951.1|	-	0.034	14.0	0.0	0.044	13.7	0.0	1.2	1	0	0	1	1	1	0	MarR	family
HTH_AsnC-type	PF13404.6	gi|564290644|ref|YP_008876951.1|	-	0.056	13.3	0.0	0.086	12.7	0.0	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_7	PF02796.15	gi|564290644|ref|YP_008876951.1|	-	0.057	13.5	0.0	0.088	12.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_Mga	PF08280.11	gi|564290644|ref|YP_008876951.1|	-	0.07	13.2	0.1	0.19	11.8	0.0	1.6	1	1	1	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
SelB-wing_3	PF09107.11	gi|564290644|ref|YP_008876951.1|	-	0.073	12.7	0.0	0.095	12.3	0.0	1.3	1	0	0	1	1	1	0	Elongation	factor	SelB,	winged	helix
HTH_30	PF13556.6	gi|564290644|ref|YP_008876951.1|	-	0.077	12.8	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290644|ref|YP_008876951.1|	-	0.1	12.4	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TrmB	PF01978.19	gi|564290644|ref|YP_008876951.1|	-	0.19	11.6	0.0	0.25	11.3	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564290645|ref|YP_008876952.1|	-	2.6e-07	30.4	0.1	6.4e-07	29.2	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.6	gi|564290645|ref|YP_008876952.1|	-	0.00098	19.1	0.0	0.0016	18.4	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_IclR	PF09339.10	gi|564290645|ref|YP_008876952.1|	-	0.0021	17.8	0.0	0.0048	16.7	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564290645|ref|YP_008876952.1|	-	0.021	14.8	0.0	0.035	14.1	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564290645|ref|YP_008876952.1|	-	0.051	13.4	0.0	0.12	12.2	0.0	1.6	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564290645|ref|YP_008876952.1|	-	0.08	12.8	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|564290645|ref|YP_008876952.1|	-	0.095	13.2	0.0	0.19	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_23	PF13384.6	gi|564290645|ref|YP_008876952.1|	-	0.17	11.7	0.5	2.7	7.9	0.1	2.9	3	0	0	3	3	3	0	Homeodomain-like	domain
FAD_binding_7	PF03441.14	gi|564290646|ref|YP_008876953.1|	-	3e-60	203.2	0.4	4.3e-60	202.7	0.4	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.18	gi|564290646|ref|YP_008876953.1|	-	8.3e-20	71.4	0.1	2.9e-19	69.7	0.1	1.8	2	0	0	2	2	2	1	DNA	photolyase
Herpes_BLRF2	PF05812.12	gi|564290647|ref|YP_008876954.1|	-	0.049	13.8	0.2	2.1	8.5	0.0	2.3	2	0	0	2	2	2	0	Herpesvirus	BLRF2	protein
FlgD_ig	PF13860.6	gi|564290650|ref|YP_008876957.1|	-	0.04	13.8	0.1	8.1	6.4	0.0	2.7	3	0	0	3	3	3	0	FlgD	Ig-like	domain
CarboxypepD_reg	PF13620.6	gi|564290650|ref|YP_008876957.1|	-	0.068	13.5	0.7	0.068	13.5	0.7	2.5	2	1	0	2	2	2	0	Carboxypeptidase	regulatory-like	domain
Pilin_N	PF07790.11	gi|564290652|ref|YP_008876959.1|	-	0.00013	22.8	0.1	0.00025	21.9	0.1	1.6	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
TraI_2B	PF18340.1	gi|564290652|ref|YP_008876959.1|	-	0.14	12.2	0.1	0.89	9.7	0.0	2.1	2	0	0	2	2	2	0	DNA	relaxase	TraI	2B/2B-like	domain
FG-GAP_2	PF14312.6	gi|564290652|ref|YP_008876959.1|	-	2.3	8.6	5.9	22	5.4	0.6	2.7	2	0	0	2	2	2	0	FG-GAP	repeat
T2SSF	PF00482.23	gi|564290653|ref|YP_008876960.1|	-	9.6e-16	57.9	1.6	1.5e-12	47.6	0.2	2.6	2	0	0	2	2	2	2	Type	II	secretion	system	(T2SS),	protein	F
Phage_X	PF05155.15	gi|564291377|ref|YP_008876961.1|	-	0.077	13.4	0.0	0.16	12.4	0.0	1.5	1	0	0	1	1	1	0	Phage	X	family
HTH_10	PF04967.12	gi|564290654|ref|YP_008876963.1|	-	6.6e-19	67.5	0.1	1e-18	66.8	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564290654|ref|YP_008876963.1|	-	1.1e-05	25.3	1.1	1.9e-05	24.6	1.1	1.4	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|564290654|ref|YP_008876963.1|	-	0.0015	18.3	0.1	0.004	17.0	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564290654|ref|YP_008876963.1|	-	0.019	14.5	0.0	0.039	13.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
UPF0122	PF04297.14	gi|564290654|ref|YP_008876963.1|	-	0.04	14.1	0.0	0.068	13.4	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
adh_short	PF00106.25	gi|564290655|ref|YP_008876964.1|	-	5.8e-61	205.4	1.2	7e-61	205.1	1.2	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564290655|ref|YP_008876964.1|	-	2.2e-49	168.1	1.2	2.8e-49	167.8	1.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564290655|ref|YP_008876964.1|	-	2.1e-19	70.1	1.1	2.8e-19	69.7	1.1	1.1	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564290655|ref|YP_008876964.1|	-	3.3e-05	23.5	0.6	0.00023	20.7	0.6	2.2	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
PSK_trans_fac	PF07704.11	gi|564290655|ref|YP_008876964.1|	-	0.011	16.5	2.8	0.011	16.5	2.8	2.0	2	1	0	2	2	2	0	Rv0623-like	transcription	factor
HEM4	PF02602.15	gi|564290655|ref|YP_008876964.1|	-	0.013	14.8	0.2	0.024	14.0	0.2	1.5	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
THF_DHG_CYH_C	PF02882.19	gi|564290655|ref|YP_008876964.1|	-	0.024	14.0	0.1	0.048	13.0	0.1	1.5	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
GDP_Man_Dehyd	PF16363.5	gi|564290655|ref|YP_008876964.1|	-	0.095	12.1	0.1	0.21	10.9	0.1	1.8	1	1	0	1	1	1	0	GDP-mannose	4,6	dehydratase
DAO	PF01266.24	gi|564290656|ref|YP_008876965.1|	-	2.7e-57	195.0	5.8	3.2e-57	194.7	5.8	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.19	gi|564290656|ref|YP_008876965.1|	-	7.9e-13	48.4	0.2	1.1e-12	47.9	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain
FAD_binding_2	PF00890.24	gi|564290656|ref|YP_008876965.1|	-	2.6e-12	46.6	5.4	2.6e-12	46.6	5.4	1.4	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564290656|ref|YP_008876965.1|	-	1.5e-06	27.7	3.3	2e-05	24.0	1.2	2.4	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564290656|ref|YP_008876965.1|	-	0.00017	22.1	0.5	0.0097	16.5	0.6	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564290656|ref|YP_008876965.1|	-	0.00021	20.8	10.0	0.0014	18.1	10.0	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564290656|ref|YP_008876965.1|	-	0.00063	19.1	2.5	0.036	13.3	0.7	2.6	2	1	0	2	2	2	1	Thi4	family
NAD_binding_7	PF13241.6	gi|564290656|ref|YP_008876965.1|	-	0.0022	18.4	0.1	0.0077	16.7	0.0	1.9	2	0	0	2	2	2	1	Putative	NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|564290656|ref|YP_008876965.1|	-	0.0033	16.5	4.6	0.64	9.0	0.1	2.2	2	0	0	2	2	2	2	Lycopene	cyclase	protein
GIDA	PF01134.22	gi|564290656|ref|YP_008876965.1|	-	0.0036	16.5	2.1	0.48	9.5	0.8	2.1	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|564290656|ref|YP_008876965.1|	-	0.0039	16.0	0.6	0.38	9.4	0.4	2.1	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|564290656|ref|YP_008876965.1|	-	0.0051	17.0	3.5	0.014	15.6	2.7	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.18	gi|564290656|ref|YP_008876965.1|	-	0.0058	16.5	0.2	0.013	15.4	0.2	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_3	PF13738.6	gi|564290656|ref|YP_008876965.1|	-	0.019	14.3	0.5	0.24	10.6	0.2	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564290656|ref|YP_008876965.1|	-	0.028	14.1	0.4	0.046	13.4	0.4	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
PALP	PF00291.25	gi|564290656|ref|YP_008876965.1|	-	0.075	12.4	3.6	0.099	12.0	0.8	2.1	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
Trp_halogenase	PF04820.14	gi|564290656|ref|YP_008876965.1|	-	0.095	11.5	1.8	3.6	6.3	0.4	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
TrkA_N	PF02254.18	gi|564290656|ref|YP_008876965.1|	-	0.13	12.6	0.3	0.3	11.4	0.3	1.6	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_9	PF13454.6	gi|564290656|ref|YP_008876965.1|	-	0.46	10.4	3.5	3	7.8	0.6	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
IF-2B	PF01008.17	gi|564290657|ref|YP_008876966.1|	-	1.7e-43	148.9	0.0	2.5e-43	148.3	0.0	1.2	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
DeoRC	PF00455.22	gi|564290657|ref|YP_008876966.1|	-	0.042	13.8	0.1	0.17	11.8	0.1	2.0	1	1	0	2	2	2	0	DeoR	C	terminal	sensor	domain
eIF-3_zeta	PF05091.12	gi|564290657|ref|YP_008876966.1|	-	0.062	12.3	0.3	0.081	11.9	0.3	1.2	1	0	0	1	1	1	0	Eukaryotic	translation	initiation	factor	3	subunit	7	(eIF-3)
PMC2NT	PF08066.12	gi|564290657|ref|YP_008876966.1|	-	0.17	12.6	2.2	0.39	11.4	2.2	1.7	1	0	0	1	1	1	0	PMC2NT	(NUC016)	domain
Syntaxin_2	PF14523.6	gi|564290657|ref|YP_008876966.1|	-	0.18	12.2	1.5	1.3	9.4	1.5	2.0	1	1	1	2	2	2	0	Syntaxin-like	protein
LPD5	PF18799.1	gi|564290657|ref|YP_008876966.1|	-	0.24	11.8	2.1	0.57	10.6	0.6	2.4	2	2	0	2	2	2	0	Large	polyvalent	protein-associated	domain	5
DUF883	PF05957.13	gi|564290657|ref|YP_008876966.1|	-	3.2	8.4	8.0	1	10.0	1.7	2.2	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
Glyco_hydro_77	PF02446.17	gi|564290658|ref|YP_008876967.1|	-	7.1e-150	499.9	0.1	8.7e-150	499.6	0.1	1.0	1	0	0	1	1	1	1	4-alpha-glucanotransferase
Glycos_transf_1	PF00534.20	gi|564290659|ref|YP_008876968.1|	-	1.8e-26	92.7	0.0	3.2e-26	91.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564290659|ref|YP_008876968.1|	-	8.4e-24	84.5	0.0	1.6e-23	83.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564290659|ref|YP_008876968.1|	-	1.3e-14	54.5	0.0	2.6e-14	53.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564290659|ref|YP_008876968.1|	-	7.4e-11	42.7	0.0	1.2e-10	42.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_5	PF08323.11	gi|564290659|ref|YP_008876968.1|	-	0.0012	18.6	0.0	0.38	10.4	0.1	2.5	1	1	1	2	2	2	2	Starch	synthase	catalytic	domain
NTP_transferase	PF00483.23	gi|564290661|ref|YP_008876970.1|	-	1.1e-37	129.9	0.0	1.4e-37	129.6	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564290661|ref|YP_008876970.1|	-	2.2e-08	34.6	0.0	2.8e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.24	gi|564290661|ref|YP_008876970.1|	-	0.096	12.4	3.9	0.2	11.4	0.0	2.8	3	0	0	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
Glucodextran_N	PF09137.11	gi|564290662|ref|YP_008876971.1|	-	1.6e-73	247.5	0.7	3.2e-73	246.5	0.7	1.5	1	0	0	1	1	1	1	Glucodextranase,	domain	N
Glyco_hydro_15	PF00723.21	gi|564290662|ref|YP_008876971.1|	-	1.3e-36	126.4	2.6	4.5e-22	78.5	0.0	5.1	3	2	1	4	4	4	4	Glycosyl	hydrolases	family	15
SBBP	PF06739.11	gi|564290662|ref|YP_008876971.1|	-	0.18	11.9	0.8	23	5.1	0.0	2.7	2	0	0	2	2	2	0	Beta-propeller	repeat
Alpha-amylase	PF00128.24	gi|564290663|ref|YP_008876972.1|	-	9.1e-45	153.7	0.1	9.5e-42	143.7	0.1	2.8	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Alpha-amylase_C	PF02806.18	gi|564290663|ref|YP_008876972.1|	-	2.9e-05	24.4	0.3	0.00034	21.0	0.0	2.7	3	0	0	3	3	3	1	Alpha	amylase,	C-terminal	all-beta	domain
Malt_amylase_C	PF16657.5	gi|564290663|ref|YP_008876972.1|	-	5.9e-05	23.1	0.0	0.00012	22.2	0.0	1.5	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
PKD	PF00801.20	gi|564290663|ref|YP_008876972.1|	-	7.7e-05	22.5	0.1	0.00027	20.7	0.1	2.0	1	0	0	1	1	1	1	PKD	domain
DUF3459	PF11941.8	gi|564290663|ref|YP_008876972.1|	-	0.0034	17.7	0.2	0.013	15.8	0.1	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3459)
Glyco_hydro_42C	PF08533.10	gi|564290663|ref|YP_008876972.1|	-	0.013	15.2	0.0	0.05	13.3	0.0	2.1	2	0	0	2	2	2	0	Beta-galactosidase	C-terminal	domain
Radical_SAM	PF04055.21	gi|564290663|ref|YP_008876972.1|	-	0.077	13.4	0.0	2.6	8.4	0.0	2.4	2	1	0	2	2	2	0	Radical	SAM	superfamily
IclR	PF01614.18	gi|564290665|ref|YP_008876974.1|	-	6.5e-31	106.9	0.1	9e-31	106.4	0.1	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564290665|ref|YP_008876974.1|	-	1e-05	25.2	0.0	3.7e-05	23.4	0.0	1.9	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564290665|ref|YP_008876974.1|	-	0.00022	21.2	0.0	0.00054	20.0	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564290665|ref|YP_008876974.1|	-	0.00061	19.6	0.1	0.0012	18.6	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|564290665|ref|YP_008876974.1|	-	0.00099	19.0	0.3	0.0061	16.5	0.0	2.4	3	0	0	3	3	3	1	MarR	family
TrmB	PF01978.19	gi|564290665|ref|YP_008876974.1|	-	0.0023	17.8	0.0	0.0052	16.6	0.0	1.7	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
BLACT_WH	PF17778.1	gi|564290665|ref|YP_008876974.1|	-	0.026	14.5	0.0	0.073	13.1	0.0	1.7	1	0	0	1	1	1	0	Beta-lactamase	associated	winged	helix	domain
PadR	PF03551.14	gi|564290665|ref|YP_008876974.1|	-	0.029	14.3	0.0	0.072	13.1	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|564290665|ref|YP_008876974.1|	-	0.046	13.6	0.0	0.18	11.7	0.0	2.0	1	0	0	1	1	1	0	MarR	family
Fe_dep_repress	PF01325.19	gi|564290665|ref|YP_008876974.1|	-	0.094	12.9	0.1	4.2	7.6	0.0	2.7	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HpcH_HpaI	PF03328.14	gi|564290666|ref|YP_008876975.1|	-	2.8e-08	33.2	0.0	6.2e-08	32.0	0.0	1.7	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
Glyoxalase	PF00903.25	gi|564290667|ref|YP_008876976.1|	-	2.2e-17	63.4	0.4	2.6e-17	63.2	0.4	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|564290667|ref|YP_008876976.1|	-	1.8e-12	47.5	0.2	2.2e-10	40.8	0.1	2.0	1	1	1	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|564290667|ref|YP_008876976.1|	-	4.2e-08	33.9	0.8	5e-08	33.7	0.8	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|564290667|ref|YP_008876976.1|	-	0.00011	22.3	0.4	0.02	15.0	0.5	2.1	1	1	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_2	PF12681.7	gi|564290667|ref|YP_008876976.1|	-	0.0038	17.2	0.0	0.006	16.5	0.0	1.6	1	1	0	1	1	1	1	Glyoxalase-like	domain
Acetyltransf_7	PF13508.7	gi|564290667|ref|YP_008876976.1|	-	0.15	12.5	0.0	0.46	11.0	0.0	1.8	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
FAD-oxidase_C	PF02913.19	gi|564290668|ref|YP_008876977.1|	-	5.9e-60	203.0	0.9	1.1e-59	202.1	0.4	1.7	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|564290668|ref|YP_008876977.1|	-	3.1e-37	127.4	0.5	6.5e-37	126.4	0.5	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|564290668|ref|YP_008876977.1|	-	2.3e-10	40.9	4.0	4.2e-10	40.0	4.0	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|564290668|ref|YP_008876977.1|	-	2.9e-10	40.4	4.6	6.1e-10	39.4	4.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|564290668|ref|YP_008876977.1|	-	1.6e-07	31.4	0.0	2.3e-05	24.5	0.0	2.9	3	0	0	3	3	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|564290668|ref|YP_008876977.1|	-	7e-05	22.9	4.8	0.026	14.6	0.6	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564290668|ref|YP_008876977.1|	-	0.00089	19.8	4.7	0.0019	18.7	4.7	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564290668|ref|YP_008876977.1|	-	0.0034	17.5	5.7	0.013	15.6	5.9	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564290668|ref|YP_008876977.1|	-	0.021	14.9	4.2	0.057	13.6	0.4	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564290668|ref|YP_008876977.1|	-	0.041	13.7	13.1	0.26	11.2	4.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|564290668|ref|YP_008876977.1|	-	0.085	13.1	0.3	0.31	11.2	0.3	2.0	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.7	gi|564290668|ref|YP_008876977.1|	-	0.13	12.8	12.6	0.21	12.2	2.7	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.7	gi|564290668|ref|YP_008876977.1|	-	0.14	12.3	12.1	1.1	9.4	2.6	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|564290668|ref|YP_008876977.1|	-	0.24	12.3	4.2	0.68	10.9	4.2	1.8	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|564290668|ref|YP_008876977.1|	-	3.7	7.8	13.0	1.3	9.2	3.0	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF362	PF04015.12	gi|564290669|ref|YP_008876978.1|	-	2.5e-05	24.6	0.0	3.5e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Lar_N	PF09861.9	gi|564290669|ref|YP_008876978.1|	-	3.8e-05	23.0	0.7	6.4e-05	22.2	0.7	1.3	1	0	0	1	1	1	1	Lactate	racemase	N-terminal	domain
AraC_binding_2	PF14525.6	gi|564290669|ref|YP_008876978.1|	-	0.0074	16.0	0.1	0.019	14.6	0.1	1.7	1	0	0	1	1	1	1	AraC-binding-like	domain
Beta-lactamase	PF00144.24	gi|564290670|ref|YP_008876979.1|	-	1e-73	248.4	2.8	1.3e-73	248.1	2.8	1.0	1	0	0	1	1	1	1	Beta-lactamase
Beta-lactamase2	PF13354.6	gi|564290670|ref|YP_008876979.1|	-	0.15	11.7	0.0	18	4.8	0.0	2.4	2	0	0	2	2	2	0	Beta-lactamase	enzyme	family
IclR	PF01614.18	gi|564290671|ref|YP_008876980.1|	-	4.2e-34	117.1	0.0	7.9e-34	116.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564290671|ref|YP_008876980.1|	-	3.1e-09	36.5	0.0	7e-09	35.4	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564290671|ref|YP_008876980.1|	-	1.6e-08	34.5	0.3	5.8e-07	29.5	0.1	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564290671|ref|YP_008876980.1|	-	4.9e-08	32.4	0.0	1.4e-07	30.9	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564290671|ref|YP_008876980.1|	-	7.4e-07	28.9	0.0	3e-06	27.0	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564290671|ref|YP_008876980.1|	-	1.5e-06	28.0	0.0	5.8e-06	26.1	0.0	2.0	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564290671|ref|YP_008876980.1|	-	5.8e-05	22.9	0.0	0.00013	21.8	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.6	gi|564290671|ref|YP_008876980.1|	-	0.00077	19.6	0.0	0.013	15.7	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_27	PF13463.6	gi|564290671|ref|YP_008876980.1|	-	0.00089	19.7	0.8	0.0064	17.0	0.1	2.5	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|564290671|ref|YP_008876980.1|	-	0.0011	18.8	0.0	0.0026	17.6	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|564290671|ref|YP_008876980.1|	-	0.0037	17.2	0.0	0.021	14.7	0.0	2.3	2	0	0	2	2	2	1	HTH	domain
HTH_23	PF13384.6	gi|564290671|ref|YP_008876980.1|	-	0.0045	16.7	0.0	0.012	15.4	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_40	PF14493.6	gi|564290671|ref|YP_008876980.1|	-	0.013	15.9	0.1	0.044	14.3	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_7	PF02796.15	gi|564290671|ref|YP_008876980.1|	-	0.021	14.9	0.0	0.056	13.5	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
DUF3489	PF11994.8	gi|564290671|ref|YP_008876980.1|	-	0.022	14.8	0.2	0.14	12.2	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3489)
HTH_45	PF14947.6	gi|564290671|ref|YP_008876980.1|	-	0.033	14.2	0.0	0.063	13.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_29	PF13551.6	gi|564290671|ref|YP_008876980.1|	-	0.045	13.8	0.0	0.12	12.4	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn	helix
Syntaxin	PF00804.25	gi|564290671|ref|YP_008876980.1|	-	0.17	11.5	0.7	0.44	10.2	0.2	1.8	2	0	0	2	2	2	0	Syntaxin
TetR_N	PF00440.23	gi|564290671|ref|YP_008876980.1|	-	0.21	11.4	1.1	0.54	10.1	0.1	2.2	2	1	1	3	3	2	0	Bacterial	regulatory	proteins,	tetR	family
Acyl-CoA_dh_1	PF00441.24	gi|564290672|ref|YP_008876981.1|	-	3.1e-30	105.4	0.4	4.3e-30	104.9	0.4	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|564290672|ref|YP_008876981.1|	-	2.9e-25	89.1	0.0	5.9e-25	88.1	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564290672|ref|YP_008876981.1|	-	6.3e-24	84.0	0.0	1.1e-23	83.3	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|564290672|ref|YP_008876981.1|	-	1e-07	32.3	0.2	1.7e-07	31.6	0.2	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.8	gi|564290672|ref|YP_008876981.1|	-	0.0017	18.1	0.0	0.0026	17.5	0.0	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
Aldedh	PF00171.22	gi|564290673|ref|YP_008876982.1|	-	7.9e-159	529.0	0.2	9e-159	528.9	0.2	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
AMP-binding	PF00501.28	gi|564290674|ref|YP_008876983.1|	-	9.7e-94	314.3	0.0	1.2e-93	314.1	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.6	gi|564290674|ref|YP_008876983.1|	-	8.5e-19	68.3	0.6	1.9e-18	67.2	0.6	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|564290674|ref|YP_008876983.1|	-	0.0013	19.0	0.2	0.0077	16.5	0.0	2.3	3	0	0	3	3	3	1	Saccharopine	dehydrogenase	NADP	binding	domain
ECH_1	PF00378.20	gi|564290675|ref|YP_008876984.1|	-	3.6e-46	157.5	0.0	4.1e-46	157.3	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564290675|ref|YP_008876984.1|	-	1.8e-32	113.2	0.1	1.4e-29	103.7	0.0	2.0	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
APH	PF01636.23	gi|564290676|ref|YP_008876985.1|	-	1e-42	146.7	5.6	1.4e-42	146.3	5.6	1.2	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
EcKinase	PF02958.20	gi|564290676|ref|YP_008876985.1|	-	0.00041	19.7	0.0	0.00067	19.1	0.0	1.3	1	0	0	1	1	1	1	Ecdysteroid	kinase
DUF1679	PF07914.11	gi|564290676|ref|YP_008876985.1|	-	0.049	12.5	0.0	0.072	11.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1679)
3HCDH_N	PF02737.18	gi|564290677|ref|YP_008876986.1|	-	6.5e-65	218.4	0.1	1.1e-64	217.6	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ECH_1	PF00378.20	gi|564290677|ref|YP_008876986.1|	-	1.5e-54	185.0	0.0	2.2e-54	184.4	0.0	1.2	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
3HCDH	PF00725.22	gi|564290677|ref|YP_008876986.1|	-	1.3e-43	147.6	1.1	7.8e-22	77.7	0.0	3.5	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
ECH_2	PF16113.5	gi|564290677|ref|YP_008876986.1|	-	2.6e-30	106.1	0.0	8.6e-27	94.5	0.0	2.3	1	1	1	2	2	2	2	Enoyl-CoA	hydratase/isomerase
NAD_binding_2	PF03446.15	gi|564290677|ref|YP_008876986.1|	-	0.00085	19.5	0.1	0.002	18.3	0.1	1.7	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.23	gi|564290677|ref|YP_008876986.1|	-	0.0016	18.4	0.1	0.0034	17.4	0.1	1.5	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
UDPG_MGDP_dh_N	PF03721.14	gi|564290677|ref|YP_008876986.1|	-	0.031	13.9	0.1	0.051	13.2	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|564290677|ref|YP_008876986.1|	-	0.044	14.3	0.4	0.15	12.6	0.4	1.9	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.21	gi|564290677|ref|YP_008876986.1|	-	0.055	12.8	1.1	0.1	11.9	1.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Acyl-CoA_dh_1	PF00441.24	gi|564290678|ref|YP_008876987.1|	-	3.6e-37	127.9	4.3	7.4e-37	126.9	4.0	1.7	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564290678|ref|YP_008876987.1|	-	7.4e-22	77.4	0.0	1.7e-21	76.2	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|564290678|ref|YP_008876987.1|	-	1.4e-15	57.8	6.2	1.4e-15	57.8	6.2	2.3	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|564290678|ref|YP_008876987.1|	-	4.8e-12	46.5	0.1	4.8e-12	46.5	0.1	2.2	3	0	0	3	3	3	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
HpaB_N	PF11794.8	gi|564290678|ref|YP_008876987.1|	-	0.011	15.4	0.1	0.037	13.7	0.0	2.0	3	0	0	3	3	3	0	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
AFG1_ATPase	PF03969.16	gi|564290678|ref|YP_008876987.1|	-	0.028	13.3	0.0	0.041	12.8	0.0	1.1	1	0	0	1	1	1	0	AFG1-like	ATPase
HAD_2	PF13419.6	gi|564290679|ref|YP_008876988.1|	-	3.4e-16	59.8	0.0	3.8e-16	59.7	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564290679|ref|YP_008876988.1|	-	2.2e-10	40.5	0.2	7.1e-10	38.8	0.2	1.9	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|564290679|ref|YP_008876988.1|	-	2.4e-09	37.8	0.2	9.4e-09	35.9	0.2	1.8	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Metal_resist	PF13801.6	gi|564290679|ref|YP_008876988.1|	-	2.8	8.2	7.3	11	6.3	0.8	3.1	3	0	0	3	3	3	0	Heavy-metal	resistance
adh_short_C2	PF13561.6	gi|564290680|ref|YP_008876989.1|	-	1.9e-61	207.6	3.1	2.4e-61	207.3	3.1	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564290680|ref|YP_008876989.1|	-	8.1e-60	201.6	0.3	1.1e-59	201.2	0.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564290680|ref|YP_008876989.1|	-	8.6e-15	55.1	0.3	1.3e-14	54.5	0.3	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564290680|ref|YP_008876989.1|	-	4e-06	26.5	0.1	5.9e-06	25.9	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Sacchrp_dh_NADP	PF03435.18	gi|564290680|ref|YP_008876989.1|	-	0.00031	21.0	0.1	0.0039	17.5	0.2	2.2	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|564290680|ref|YP_008876989.1|	-	0.0013	18.6	0.3	0.0027	17.6	0.3	1.6	1	0	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|564290680|ref|YP_008876989.1|	-	0.0019	17.3	0.1	0.0032	16.6	0.1	1.4	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
FTR	PF01913.18	gi|564290680|ref|YP_008876989.1|	-	0.0026	17.7	0.1	0.0044	17.0	0.1	1.4	1	0	0	1	1	1	1	Formylmethanofuran-tetrahydromethanopterin	formyltransferase
THF_DHG_CYH_C	PF02882.19	gi|564290680|ref|YP_008876989.1|	-	0.0042	16.4	0.0	0.012	15.0	0.0	1.7	2	0	0	2	2	2	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
F420_oxidored	PF03807.17	gi|564290680|ref|YP_008876989.1|	-	0.013	16.1	0.1	0.026	15.1	0.1	1.5	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
GDP_Man_Dehyd	PF16363.5	gi|564290680|ref|YP_008876989.1|	-	0.073	12.5	0.1	0.11	11.8	0.0	1.4	2	0	0	2	2	2	0	GDP-mannose	4,6	dehydratase
DFP	PF04127.15	gi|564290680|ref|YP_008876989.1|	-	0.11	12.3	0.1	0.24	11.2	0.1	1.6	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
MaoC_dehydratas	PF01575.19	gi|564290681|ref|YP_008876990.1|	-	2.6e-27	94.8	0.4	3.2e-27	94.5	0.4	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564290681|ref|YP_008876990.1|	-	1e-06	28.9	0.4	2e-06	27.9	0.4	1.4	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.22	gi|564290681|ref|YP_008876990.1|	-	0.025	14.9	0.2	0.048	14.0	0.2	1.8	1	1	0	1	1	1	0	Thioesterase	superfamily
4HBT_2	PF13279.6	gi|564290681|ref|YP_008876990.1|	-	0.039	14.5	0.0	0.044	14.3	0.0	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
Acyl-CoA_dh_1	PF00441.24	gi|564290682|ref|YP_008876991.1|	-	3.7e-55	186.3	2.6	6.7e-55	185.4	2.6	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.16	gi|564290682|ref|YP_008876991.1|	-	6.6e-28	97.6	1.7	8.2e-28	97.3	0.4	1.9	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.19	gi|564290682|ref|YP_008876991.1|	-	1.3e-27	95.8	0.1	2.5e-27	94.9	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.11	gi|564290682|ref|YP_008876991.1|	-	4.7e-27	94.9	7.3	8.3e-27	94.1	7.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.8	gi|564290682|ref|YP_008876991.1|	-	1.1e-05	25.3	2.4	2.1e-05	24.3	0.2	2.3	2	1	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.13	gi|564290682|ref|YP_008876991.1|	-	0.0076	15.3	1.1	0.035	13.2	0.1	2.1	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Peripla_BP_6	PF13458.6	gi|564290683|ref|YP_008876992.1|	-	5.1e-40	138.2	10.2	6.2e-40	137.9	10.2	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|564290683|ref|YP_008876992.1|	-	9e-25	87.5	0.3	1.4e-24	86.9	0.3	1.2	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|564290683|ref|YP_008876992.1|	-	2.6e-14	53.0	1.8	5e-13	48.8	1.8	2.1	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|564290683|ref|YP_008876992.1|	-	0.00039	20.1	2.0	0.0011	18.7	2.0	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.16	gi|564290684|ref|YP_008876993.1|	-	5e-32	111.1	46.4	5.9e-32	110.9	46.4	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
IRK	PF01007.20	gi|564290684|ref|YP_008876993.1|	-	0.12	12.2	0.1	0.12	12.2	0.1	2.7	3	0	0	3	3	3	0	Inward	rectifier	potassium	channel	transmembrane	domain
BPD_transp_2	PF02653.16	gi|564290685|ref|YP_008876994.1|	-	3e-34	118.4	26.8	4.7e-34	117.8	26.8	1.3	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|564290686|ref|YP_008876995.1|	-	6.5e-28	97.9	0.0	9.1e-28	97.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290686|ref|YP_008876995.1|	-	1.2e-07	31.9	0.3	0.00034	20.5	0.1	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|564290686|ref|YP_008876995.1|	-	6.2e-07	29.2	0.2	1.2e-06	28.3	0.2	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.6	gi|564290686|ref|YP_008876995.1|	-	6.6e-05	23.5	0.1	8.9e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564290686|ref|YP_008876995.1|	-	0.002	17.6	0.6	0.045	13.2	0.1	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564290686|ref|YP_008876995.1|	-	0.0067	16.2	0.1	0.012	15.3	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564290686|ref|YP_008876995.1|	-	0.03	14.7	0.2	0.075	13.4	0.2	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564290686|ref|YP_008876995.1|	-	0.078	13.4	0.1	0.52	10.7	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.6	gi|564290686|ref|YP_008876995.1|	-	0.085	13.2	0.1	0.16	12.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|564290686|ref|YP_008876995.1|	-	0.14	11.7	0.3	1.6	8.3	0.1	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_15	PF13175.6	gi|564290686|ref|YP_008876995.1|	-	0.15	11.8	0.7	0.5	10.0	0.3	1.9	2	1	1	3	3	3	0	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|564290686|ref|YP_008876995.1|	-	0.19	10.9	0.2	0.37	9.9	0.1	1.5	2	0	0	2	2	2	0	NB-ARC	domain
ABC_tran	PF00005.27	gi|564290687|ref|YP_008876996.1|	-	2.1e-29	102.8	0.0	3.1e-29	102.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290687|ref|YP_008876996.1|	-	2.5e-12	47.3	0.7	8e-06	25.9	0.1	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564290687|ref|YP_008876996.1|	-	4.5e-07	29.5	0.1	9.9e-07	28.4	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564290687|ref|YP_008876996.1|	-	5e-05	23.9	0.4	9.9e-05	22.9	0.2	1.4	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564290687|ref|YP_008876996.1|	-	5.6e-05	22.7	0.2	0.0016	17.9	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564290687|ref|YP_008876996.1|	-	0.0022	18.3	0.1	0.011	16.0	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|564290687|ref|YP_008876996.1|	-	0.016	14.8	0.1	0.095	12.3	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|564290687|ref|YP_008876996.1|	-	0.023	14.4	0.2	0.066	12.9	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|564290687|ref|YP_008876996.1|	-	0.024	15.0	0.1	0.043	14.2	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.6	gi|564290687|ref|YP_008876996.1|	-	0.024	14.3	0.0	0.032	14.0	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564290687|ref|YP_008876996.1|	-	0.059	13.8	0.0	0.12	12.8	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.12	gi|564290687|ref|YP_008876996.1|	-	0.078	12.3	0.1	1.5	8.0	0.0	2.1	2	0	0	2	2	2	0	Zeta	toxin
ABC_ATPase	PF09818.9	gi|564290687|ref|YP_008876996.1|	-	0.13	11.0	0.2	0.82	8.4	0.0	1.9	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
Rad17	PF03215.15	gi|564290687|ref|YP_008876996.1|	-	0.23	11.4	0.0	0.29	11.0	0.0	1.3	1	0	0	1	1	1	0	Rad17	P-loop	domain
Aldo_ket_red	PF00248.21	gi|564290689|ref|YP_008876998.1|	-	1.9e-61	207.9	0.0	2.2e-61	207.6	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
HypA	PF01155.19	gi|564291379|ref|YP_008876999.1|	-	0.0011	19.0	0.2	0.0011	18.9	0.2	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|564291379|ref|YP_008876999.1|	-	0.0013	18.8	1.8	0.0029	17.7	1.8	1.6	1	1	0	1	1	1	1	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564291379|ref|YP_008876999.1|	-	0.0037	17.2	0.4	0.0038	17.2	0.4	1.1	1	0	0	1	1	1	1	zinc-ribbons
DZR	PF12773.7	gi|564291379|ref|YP_008876999.1|	-	0.012	15.6	1.2	0.014	15.4	1.2	1.1	1	0	0	1	1	1	0	Double	zinc	ribbon
TFIIS_C	PF01096.18	gi|564291379|ref|YP_008876999.1|	-	0.016	15.0	0.5	1.1	9.2	0.0	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
TackOD1	PF18551.1	gi|564291379|ref|YP_008876999.1|	-	0.018	14.7	0.1	0.022	14.5	0.1	1.2	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
Zn_ribbon_SprT	PF17283.2	gi|564291379|ref|YP_008876999.1|	-	0.05	13.5	3.1	3.4	7.7	0.3	2.1	1	1	1	2	2	2	0	SprT-like	zinc	ribbon	domain
zf-C2H2	PF00096.26	gi|564291379|ref|YP_008876999.1|	-	0.15	12.6	3.2	4	8.1	0.1	2.2	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
A2L_zn_ribbon	PF08792.10	gi|564291379|ref|YP_008876999.1|	-	0.21	11.4	3.0	5.9	6.7	3.0	2.1	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Aminotran_5	PF00266.19	gi|564290690|ref|YP_008877000.1|	-	2.1e-35	122.4	0.0	2.5e-35	122.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.17	gi|564290690|ref|YP_008877000.1|	-	4.7e-05	22.9	0.2	7.8e-05	22.1	0.2	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.20	gi|564290690|ref|YP_008877000.1|	-	0.00048	18.8	0.0	0.0007	18.2	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Phage_integrase	PF00589.22	gi|564290691|ref|YP_008877001.1|	-	1.3e-17	64.2	0.0	3e-17	62.9	0.0	1.5	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|564290691|ref|YP_008877001.1|	-	2.8e-05	24.3	0.1	8.7e-05	22.7	0.1	1.8	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|564290691|ref|YP_008877001.1|	-	0.0013	19.0	0.1	0.012	15.9	0.0	2.2	2	0	0	2	2	2	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|564290691|ref|YP_008877001.1|	-	0.003	18.0	0.0	0.0081	16.6	0.0	1.7	1	0	0	1	1	1	1	Phage	integrase,	N-terminal	SAM-like	domain
Sigma70_r3	PF04539.16	gi|564291380|ref|YP_008877002.1|	-	0.013	15.6	0.8	0.02	15.0	0.3	1.5	1	1	1	2	2	2	0	Sigma-70	region	3
HTH_13	PF11972.8	gi|564291380|ref|YP_008877002.1|	-	0.034	14.2	0.0	0.1	12.7	0.0	1.7	1	1	1	2	2	2	0	HTH	DNA	binding	domain
DUF3791	PF12668.7	gi|564291380|ref|YP_008877002.1|	-	0.082	13.0	0.0	0.12	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3791)
HTH_10	PF04967.12	gi|564291380|ref|YP_008877002.1|	-	0.11	12.3	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_17	PF12728.7	gi|564291380|ref|YP_008877002.1|	-	0.13	12.5	0.1	0.34	11.1	0.1	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564291380|ref|YP_008877002.1|	-	0.19	11.3	0.0	0.24	10.9	0.0	1.2	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_AsnC-type	PF13404.6	gi|564291380|ref|YP_008877002.1|	-	0.21	11.5	0.0	0.3	10.9	0.0	1.3	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564291380|ref|YP_008877002.1|	-	0.24	11.1	0.1	0.47	10.2	0.1	1.5	1	1	1	2	2	2	0	DeoR-like	helix-turn-helix	domain
DUF4145	PF13643.6	gi|564291381|ref|YP_008877004.1|	-	0.0037	17.4	0.2	0.013	15.6	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4145)
ABC_tran_CTD	PF16326.5	gi|564291381|ref|YP_008877004.1|	-	2.2	8.6	11.9	4.8	7.5	0.0	4.1	4	1	0	4	4	4	0	ABC	transporter	C-terminal	domain
DZR	PF12773.7	gi|564290693|ref|YP_008877006.1|	-	8.7e-07	28.9	9.0	2e-06	27.7	8.9	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564290693|ref|YP_008877006.1|	-	1.8e-05	24.3	15.6	0.0028	17.3	5.4	2.5	2	0	0	2	2	2	2	zinc-ribbon	domain
RHH_1	PF01402.21	gi|564290693|ref|YP_008877006.1|	-	2.5e-05	24.0	4.0	0.0038	17.1	1.5	3.4	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
zinc_ribbon_15	PF17032.5	gi|564290693|ref|YP_008877006.1|	-	3.8e-05	24.4	9.2	0.00035	21.3	1.9	2.3	2	0	0	2	2	2	2	zinc-ribbon	family
zf-ribbon_3	PF13248.6	gi|564290693|ref|YP_008877006.1|	-	8.9e-05	21.8	13.8	0.0011	18.3	4.6	2.8	1	1	2	3	3	3	3	zinc-ribbon	domain
DUF1902	PF08972.11	gi|564290693|ref|YP_008877006.1|	-	0.0026	17.7	0.3	0.014	15.4	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1902)
zf-NADH-PPase	PF09297.11	gi|564290693|ref|YP_008877006.1|	-	0.039	13.6	10.3	1	9.1	0.1	3.6	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS91	PF14319.6	gi|564290693|ref|YP_008877006.1|	-	0.043	13.8	5.0	0.088	12.9	5.0	1.5	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
VapB_antitoxin	PF09957.9	gi|564290693|ref|YP_008877006.1|	-	0.045	13.7	0.6	0.19	11.7	0.6	2.0	1	1	0	1	1	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
Zn-ribbon_8	PF09723.10	gi|564290693|ref|YP_008877006.1|	-	0.087	13.0	10.9	0.31	11.2	3.1	3.4	2	1	1	3	3	3	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.6	gi|564290693|ref|YP_008877006.1|	-	0.093	12.7	15.1	1.7	8.6	1.8	3.6	3	1	0	3	3	3	0	Nudix	N-terminal
zf_UBZ	PF18439.1	gi|564290693|ref|YP_008877006.1|	-	0.13	11.9	3.1	36	4.1	0.2	3.4	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
DUF1610	PF07754.11	gi|564290693|ref|YP_008877006.1|	-	0.16	12.0	0.6	0.16	12.0	0.6	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
zinc-ribbons_6	PF07191.12	gi|564290693|ref|YP_008877006.1|	-	0.2	11.6	8.8	2.1	8.4	9.0	2.2	1	1	0	1	1	1	0	zinc-ribbons
zf-C3HC4_3	PF13920.6	gi|564290693|ref|YP_008877006.1|	-	0.27	11.1	5.8	0.26	11.2	1.0	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
PolC_DP2	PF03833.13	gi|564290693|ref|YP_008877006.1|	-	0.29	9.0	4.9	0.37	8.6	4.9	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
Cys_rich_KTR	PF14205.6	gi|564290693|ref|YP_008877006.1|	-	0.5	10.2	3.5	5.2	6.9	3.6	2.3	1	1	1	2	2	2	0	Cysteine-rich	KTR
Metallothio_PEC	PF02068.16	gi|564290693|ref|YP_008877006.1|	-	0.51	10.7	12.4	0.65	10.4	11.7	1.6	1	1	0	1	1	1	0	Plant	PEC	family	metallothionein
Prok-RING_1	PF14446.6	gi|564290693|ref|YP_008877006.1|	-	0.6	10.1	9.1	0.79	9.7	5.2	2.3	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
HypA	PF01155.19	gi|564290693|ref|YP_008877006.1|	-	1.6	8.8	9.8	0.75	9.8	2.8	2.3	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
C1_1	PF00130.22	gi|564290693|ref|YP_008877006.1|	-	3.4	7.6	8.5	1.4	8.9	5.0	1.9	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L32p	PF01783.23	gi|564290693|ref|YP_008877006.1|	-	3.6	7.9	7.6	1.6	9.1	4.2	2.2	2	1	0	2	2	2	0	Ribosomal	L32p	protein	family
NOB1_Zn_bind	PF08772.11	gi|564290693|ref|YP_008877006.1|	-	4.9	7.4	12.9	8.2	6.7	5.7	2.9	1	1	2	3	3	3	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-RING_7	PF02591.15	gi|564290693|ref|YP_008877006.1|	-	6.8	7.0	8.8	8.1	6.7	0.3	3.1	3	0	0	3	3	3	0	C4-type	zinc	ribbon	domain
RHH_1	PF01402.21	gi|564290694|ref|YP_008877007.1|	-	1.4e-08	34.3	0.2	2e-08	33.8	0.2	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|564290694|ref|YP_008877007.1|	-	1.4e-05	25.2	0.0	1.4e-05	25.2	0.0	1.0	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
VapB_antitoxin	PF09957.9	gi|564290694|ref|YP_008877007.1|	-	0.017	15.0	0.1	0.023	14.6	0.1	1.3	1	1	0	1	1	1	0	Bacterial	antitoxin	of	type	II	TA	system,	VapB
PSK_trans_fac	PF07704.11	gi|564290694|ref|YP_008877007.1|	-	0.019	15.7	1.0	0.024	15.4	1.0	1.3	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
DEK_C	PF08766.11	gi|564290694|ref|YP_008877007.1|	-	0.12	12.4	0.4	0.23	11.4	0.1	1.6	2	0	0	2	2	2	0	DEK	C	terminal	domain
Tubulin	PF00091.25	gi|564290695|ref|YP_008877008.1|	-	1.6e-37	129.6	3.4	4.5e-37	128.2	3.4	1.8	1	1	0	1	1	1	1	Tubulin/FtsZ	family,	GTPase	domain
FtsZ_C	PF12327.8	gi|564290695|ref|YP_008877008.1|	-	3.7e-36	123.3	4.9	3.8e-36	123.3	0.8	2.9	2	1	1	3	3	3	1	FtsZ	family,	C-terminal	domain
ThiF	PF00899.21	gi|564290695|ref|YP_008877008.1|	-	0.071	12.4	0.0	0.16	11.3	0.0	1.5	1	0	0	1	1	1	0	ThiF	family
ATP_bind_3	PF01171.20	gi|564290696|ref|YP_008877009.1|	-	4.2e-14	52.7	0.0	6e-14	52.2	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.16	gi|564290696|ref|YP_008877009.1|	-	0.00017	20.5	0.0	0.00023	20.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyl	transferase
zn-ribbon_14	PF16503.5	gi|564290696|ref|YP_008877009.1|	-	0.0006	19.3	1.2	0.0006	19.3	1.2	3.3	5	0	0	5	5	5	1	Zinc-ribbon
Lar_restr_allev	PF14354.6	gi|564290696|ref|YP_008877009.1|	-	0.0008	19.7	2.4	0.4	11.1	0.1	3.4	3	0	0	3	3	3	1	Restriction	alleviation	protein	Lar
NAD_synthase	PF02540.17	gi|564290696|ref|YP_008877009.1|	-	0.0012	18.0	0.0	0.002	17.3	0.0	1.3	1	0	0	1	1	1	1	NAD	synthase
PAPS_reduct	PF01507.19	gi|564290696|ref|YP_008877009.1|	-	0.0015	18.6	0.0	0.0033	17.5	0.0	1.5	1	1	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
QueC	PF06508.13	gi|564290696|ref|YP_008877009.1|	-	0.044	13.3	0.5	0.34	10.4	0.0	2.5	3	0	0	3	3	3	0	Queuosine	biosynthesis	protein	QueC
QueH	PF02677.14	gi|564290696|ref|YP_008877009.1|	-	0.093	12.8	0.0	0.14	12.3	0.0	1.3	1	0	0	1	1	1	0	Epoxyqueuosine	reductase	QueH
DUF3181	PF11378.8	gi|564290696|ref|YP_008877009.1|	-	0.15	12.4	0.0	0.3	11.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3181)
zf-ribbon_3	PF13248.6	gi|564290696|ref|YP_008877009.1|	-	0.48	9.9	14.1	3.8	7.0	0.2	3.7	3	0	0	3	3	3	0	zinc-ribbon	domain
DZR	PF12773.7	gi|564290696|ref|YP_008877009.1|	-	2.8	8.0	9.2	1.4	9.0	0.8	3.2	3	0	0	3	3	3	0	Double	zinc	ribbon
Abhydrolase_6	PF12697.7	gi|564290697|ref|YP_008877010.1|	-	1.2e-06	29.3	8.0	1.5e-06	28.9	8.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.7	gi|564290697|ref|YP_008877010.1|	-	0.12	12.2	0.0	0.17	11.6	0.0	1.2	1	0	0	1	1	1	0	Alpha/beta	hydrolase	family
DUF2332	PF10094.9	gi|564290698|ref|YP_008877011.1|	-	7.8e-116	387.2	5.1	8.7e-116	387.0	5.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2332)
Amino_oxidase	PF01593.24	gi|564290699|ref|YP_008877012.1|	-	8.8e-14	51.6	3.0	1.8e-13	50.6	3.0	1.5	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|564290699|ref|YP_008877012.1|	-	7e-13	48.6	6.5	1.3e-12	47.8	3.8	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|564290699|ref|YP_008877012.1|	-	2.9e-06	26.6	1.8	2.9e-06	26.6	1.8	1.6	2	0	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.24	gi|564290699|ref|YP_008877012.1|	-	3.5e-06	26.9	1.7	3.5e-06	26.9	1.7	1.9	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564290699|ref|YP_008877012.1|	-	4.6e-05	22.3	1.4	0.0014	17.5	1.1	2.5	3	0	0	3	3	3	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|564290699|ref|YP_008877012.1|	-	6e-05	22.4	1.2	0.00013	21.3	1.2	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564290699|ref|YP_008877012.1|	-	0.00018	20.9	0.5	0.024	13.9	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564290699|ref|YP_008877012.1|	-	0.00022	20.7	1.0	0.00038	19.9	1.0	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564290699|ref|YP_008877012.1|	-	0.0005	19.4	0.3	0.00096	18.5	0.3	1.4	1	0	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.19	gi|564290699|ref|YP_008877012.1|	-	0.00069	19.0	0.9	0.0012	18.1	0.9	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|564290699|ref|YP_008877012.1|	-	0.013	14.5	0.4	0.02	13.9	0.4	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
GIDA	PF01134.22	gi|564290699|ref|YP_008877012.1|	-	0.02	14.0	1.6	0.028	13.5	1.6	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|564290699|ref|YP_008877012.1|	-	0.077	13.0	0.5	3.5	7.6	0.2	3.0	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Pyr_redox	PF00070.27	gi|564290699|ref|YP_008877012.1|	-	0.14	12.7	0.6	1.3	9.6	0.3	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.21	gi|564290699|ref|YP_008877012.1|	-	0.34	10.2	6.0	0.036	13.4	1.6	1.6	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Reo_sigmaC_M	PF17750.1	gi|564290701|ref|YP_008877014.1|	-	0.07	13.0	0.0	0.2	11.5	0.0	1.7	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein	triple	beta	spiral
CopD	PF05425.13	gi|564290702|ref|YP_008877015.1|	-	1.4e-11	44.7	7.0	1.4e-11	44.7	7.0	2.0	1	1	1	2	2	2	1	Copper	resistance	protein	D
DUF2214	PF09980.9	gi|564290702|ref|YP_008877015.1|	-	0.00036	20.4	6.8	0.0013	18.6	6.8	1.8	1	1	0	1	1	1	1	Predicted	membrane	protein	(DUF2214)
DUF2749	PF10907.8	gi|564290702|ref|YP_008877015.1|	-	0.01	16.0	3.3	2.1	8.6	0.0	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2749)
RhodobacterPufX	PF11511.8	gi|564290703|ref|YP_008877016.1|	-	0.0074	15.9	0.4	0.0074	15.9	0.4	3.1	3	0	0	3	3	3	1	Intrinsic	membrane	protein	PufX
PgaD	PF13994.6	gi|564290703|ref|YP_008877016.1|	-	0.52	10.4	3.5	0.49	10.4	2.4	1.6	1	1	0	1	1	1	0	PgaD-like	protein
Tim17	PF02466.19	gi|564290703|ref|YP_008877016.1|	-	7.2	7.0	11.3	7.5	7.0	2.8	2.9	2	1	1	3	3	3	0	Tim17/Tim22/Tim23/Pmp24	family
Methyltransf_11	PF08241.12	gi|564290704|ref|YP_008877017.1|	-	8.6e-17	61.6	0.4	2.8e-16	59.9	0.2	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564290704|ref|YP_008877017.1|	-	7.4e-15	55.4	1.2	3.4e-14	53.3	0.2	2.6	2	2	1	3	3	3	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290704|ref|YP_008877017.1|	-	3e-12	46.6	0.2	3.1e-11	43.3	0.2	2.2	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564290704|ref|YP_008877017.1|	-	8e-11	42.0	0.0	1.5e-10	41.2	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564290704|ref|YP_008877017.1|	-	1.6e-08	35.2	0.7	1.9e-07	31.7	0.3	2.7	2	1	0	2	2	2	1	Methyltransferase	domain
MetW	PF07021.12	gi|564290704|ref|YP_008877017.1|	-	1.2e-07	31.6	0.0	2.1e-07	30.8	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Ubie_methyltran	PF01209.18	gi|564290704|ref|YP_008877017.1|	-	1.2e-06	28.1	0.0	9.3e-06	25.1	0.0	2.2	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_32	PF13679.6	gi|564290704|ref|YP_008877017.1|	-	7.1e-05	22.9	0.0	0.00018	21.5	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.19	gi|564290704|ref|YP_008877017.1|	-	0.00068	19.4	0.0	0.0014	18.4	0.0	1.5	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
CMAS	PF02353.20	gi|564290704|ref|YP_008877017.1|	-	0.001	18.4	0.1	0.0016	17.8	0.1	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.14	gi|564290704|ref|YP_008877017.1|	-	0.0068	16.0	0.1	0.015	14.9	0.1	1.5	1	0	0	1	1	1	1	Methyltransferase	small	domain
FtsJ	PF01728.19	gi|564290704|ref|YP_008877017.1|	-	0.0084	16.2	0.1	0.014	15.5	0.1	1.5	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_8	PF05148.15	gi|564290704|ref|YP_008877017.1|	-	0.016	15.0	0.1	0.022	14.6	0.1	1.2	1	0	0	1	1	1	0	Hypothetical	methyltransferase
RrnaAD	PF00398.20	gi|564290704|ref|YP_008877017.1|	-	0.027	13.6	0.0	0.04	13.0	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.13	gi|564290704|ref|YP_008877017.1|	-	0.2	11.0	0.1	0.4	10.0	0.1	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
AP_endonuc_2	PF01261.24	gi|564290705|ref|YP_008877018.1|	-	3.2e-31	108.4	1.4	6.4e-31	107.4	0.9	1.6	2	0	0	2	2	2	1	Xylose	isomerase-like	TIM	barrel
Autoind_bind	PF03472.15	gi|564290705|ref|YP_008877018.1|	-	0.064	12.7	0.1	2.9	7.4	0.1	2.5	3	0	0	3	3	3	0	Autoinducer	binding	domain
HTH_10	PF04967.12	gi|564290707|ref|YP_008877020.1|	-	8.5e-13	47.9	0.0	1.3e-12	47.3	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|564290707|ref|YP_008877020.1|	-	0.0039	17.0	0.0	0.0089	15.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|564290707|ref|YP_008877020.1|	-	0.13	12.0	0.2	0.41	10.5	0.0	1.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
BPL_LplA_LipB	PF03099.19	gi|564290708|ref|YP_008877021.1|	-	1.6e-06	28.1	0.0	2.5e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Cupin_2	PF07883.11	gi|564290709|ref|YP_008877022.1|	-	7.9e-11	41.5	0.9	1.8e-10	40.4	0.9	1.6	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|564290709|ref|YP_008877022.1|	-	0.00049	20.0	0.5	0.00094	19.1	0.5	1.6	1	1	0	1	1	1	1	AraC-like	ligand	binding	domain
TF_Zn_Ribbon	PF08271.12	gi|564290709|ref|YP_008877022.1|	-	0.00082	18.8	1.8	0.0019	17.7	1.8	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cupin_3	PF05899.12	gi|564290709|ref|YP_008877022.1|	-	0.013	15.2	0.5	0.04	13.6	0.5	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF861)
Nudix_N_2	PF14803.6	gi|564290709|ref|YP_008877022.1|	-	0.018	15.0	1.5	0.036	14.0	1.5	1.5	1	0	0	1	1	1	0	Nudix	N-terminal
zinc_ribbon_4	PF13717.6	gi|564290709|ref|YP_008877022.1|	-	0.062	13.2	1.0	0.21	11.6	1.0	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
HypA	PF01155.19	gi|564290709|ref|YP_008877022.1|	-	0.066	13.2	0.0	0.091	12.8	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Zn-ribbon_8	PF09723.10	gi|564290709|ref|YP_008877022.1|	-	0.78	9.9	3.5	18	5.5	0.6	2.2	1	1	0	2	2	2	0	Zinc	ribbon	domain
HTH_10	PF04967.12	gi|564290710|ref|YP_008877023.1|	-	1.2e-15	57.1	0.0	1.8e-15	56.4	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR_2	PF12802.7	gi|564290710|ref|YP_008877023.1|	-	0.065	13.1	0.0	4.6	7.2	0.0	2.5	2	0	0	2	2	2	0	MarR	family
HTH_1	PF00126.27	gi|564290710|ref|YP_008877023.1|	-	0.14	12.1	0.0	0.39	10.7	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Complex1_49kDa	PF00346.19	gi|564290711|ref|YP_008877024.1|	-	3.4e-84	282.2	0.0	6.8e-83	277.9	0.0	2.0	1	1	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Complex1_30kDa	PF00329.19	gi|564290711|ref|YP_008877024.1|	-	9.1e-35	119.9	0.1	1.8e-34	119.0	0.1	1.5	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
PMSR	PF01625.21	gi|564290712|ref|YP_008877025.1|	-	3.4e-64	215.7	2.6	3.9e-64	215.5	2.6	1.0	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
4HBT_2	PF13279.6	gi|564290713|ref|YP_008877026.1|	-	2.6e-19	69.9	0.0	3.1e-19	69.7	0.0	1.0	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.22	gi|564290713|ref|YP_008877026.1|	-	9.7e-18	64.3	0.1	2.2e-17	63.2	0.1	1.6	1	1	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.17	gi|564290713|ref|YP_008877026.1|	-	3.1e-11	43.1	0.1	1.8e-06	27.4	0.4	2.0	2	0	0	2	2	2	2	Acyl-ACP	thioesterase
AI-2E_transport	PF01594.16	gi|564290714|ref|YP_008877027.1|	-	8.2e-18	64.6	45.5	8.1e-17	61.4	45.5	2.5	1	1	0	1	1	1	1	AI-2E	family	transporter
Mannosyl_trans4	PF15971.5	gi|564290715|ref|YP_008877028.1|	-	9.5e-73	243.4	8.3	9.5e-73	243.4	8.3	1.8	2	0	0	2	2	2	1	DolP-mannose	mannosyltransferase
RIO1	PF01163.22	gi|564290716|ref|YP_008877029.1|	-	6.2e-50	169.4	0.7	8.7e-50	168.9	0.7	1.1	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.11	gi|564290716|ref|YP_008877029.1|	-	2e-29	101.6	0.1	3.8e-29	100.7	0.1	1.5	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.23	gi|564290716|ref|YP_008877029.1|	-	3.6e-05	23.8	0.3	0.022	14.7	0.0	2.5	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.25	gi|564290716|ref|YP_008877029.1|	-	0.0038	16.6	0.0	0.0059	16.0	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
DUF5642	PF18702.1	gi|564290716|ref|YP_008877029.1|	-	0.13	12.0	0.0	0.2	11.4	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5642)
Fe_dep_repress	PF01325.19	gi|564290717|ref|YP_008877030.1|	-	1.7e-13	50.5	0.0	3.4e-13	49.6	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|564290717|ref|YP_008877030.1|	-	5.1e-07	29.5	0.0	1.1e-06	28.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564290717|ref|YP_008877030.1|	-	0.00059	19.7	0.0	0.001	18.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
Fe_dep_repr_C	PF02742.15	gi|564290717|ref|YP_008877030.1|	-	0.00094	19.2	0.1	0.0017	18.4	0.1	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
HTH_24	PF13412.6	gi|564290717|ref|YP_008877030.1|	-	0.001	18.6	0.0	0.0017	17.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.6	gi|564290717|ref|YP_008877030.1|	-	0.0091	16.0	0.0	0.021	14.8	0.0	1.6	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290717|ref|YP_008877030.1|	-	0.018	14.8	0.0	0.041	13.7	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|564290717|ref|YP_008877030.1|	-	0.038	14.3	0.0	0.079	13.3	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_27	PF13463.6	gi|564290717|ref|YP_008877030.1|	-	0.041	14.4	0.0	0.079	13.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
NifU	PF01106.17	gi|564290718|ref|YP_008877031.1|	-	2.9e-13	49.8	0.1	4.1e-13	49.3	0.1	1.2	1	0	0	1	1	1	1	NifU-like	domain
AFOR_C	PF01314.18	gi|564290719|ref|YP_008877032.1|	-	2.1e-75	254.1	0.0	3.7e-75	253.3	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|564290719|ref|YP_008877032.1|	-	3.6e-62	209.8	0.1	7.1e-62	208.8	0.1	1.5	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
SBP_bac_5	PF00496.22	gi|564290720|ref|YP_008877033.1|	-	4.2e-50	170.8	5.5	6.2e-50	170.2	5.5	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|564290721|ref|YP_008877034.1|	-	1.6e-41	142.1	12.2	1.6e-41	142.1	12.2	1.8	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564290722|ref|YP_008877035.1|	-	6.5e-31	107.5	9.2	6.5e-31	107.5	9.2	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|564290722|ref|YP_008877035.1|	-	1.5e-08	34.5	0.1	1.5e-08	34.5	0.1	3.0	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|564290723|ref|YP_008877036.1|	-	1.1e-26	94.0	0.0	1.5e-26	93.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|564290723|ref|YP_008877036.1|	-	8.4e-20	71.1	0.1	1.5e-19	70.3	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|564290723|ref|YP_008877036.1|	-	8.4e-05	22.5	0.2	0.00019	21.4	0.0	1.5	1	1	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|564290723|ref|YP_008877036.1|	-	0.038	14.4	0.1	0.091	13.1	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564290723|ref|YP_008877036.1|	-	0.039	14.2	0.4	0.46	10.8	0.4	2.1	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|564290724|ref|YP_008877037.1|	-	1.6e-34	119.3	0.0	4.5e-34	117.9	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
oligo_HPY	PF08352.12	gi|564290724|ref|YP_008877037.1|	-	4e-16	59.3	0.0	7.6e-16	58.4	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_16	PF13191.6	gi|564290724|ref|YP_008877037.1|	-	4.8e-06	27.1	2.2	5.6e-06	26.9	0.1	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564290724|ref|YP_008877037.1|	-	5.4e-06	26.7	0.2	0.00011	22.4	0.2	2.4	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.19	gi|564290724|ref|YP_008877037.1|	-	2.2e-05	24.0	0.0	3.9e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|564290724|ref|YP_008877037.1|	-	0.00014	21.7	0.1	0.27	11.0	0.0	2.3	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA	PF00004.29	gi|564290724|ref|YP_008877037.1|	-	0.0026	18.2	0.0	0.044	14.2	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.14	gi|564290724|ref|YP_008877037.1|	-	0.0061	16.6	0.2	0.035	14.1	0.1	2.1	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.12	gi|564290724|ref|YP_008877037.1|	-	0.0069	16.3	0.1	0.013	15.4	0.1	1.4	1	0	0	1	1	1	1	NACHT	domain
ATP-synt_ab	PF00006.25	gi|564290724|ref|YP_008877037.1|	-	0.014	15.1	0.0	0.017	14.8	0.0	1.3	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
MobB	PF03205.14	gi|564290724|ref|YP_008877037.1|	-	0.026	14.4	0.1	0.048	13.5	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RsgA_GTPase	PF03193.16	gi|564290724|ref|YP_008877037.1|	-	0.036	14.0	0.0	0.063	13.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
PRK	PF00485.18	gi|564290724|ref|YP_008877037.1|	-	0.04	13.7	0.0	0.069	12.9	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
TniB	PF05621.11	gi|564290724|ref|YP_008877037.1|	-	0.043	13.2	0.0	6.5	6.1	0.0	2.3	2	0	0	2	2	2	0	Bacterial	TniB	protein
Sigma54_activat	PF00158.26	gi|564290724|ref|YP_008877037.1|	-	0.044	13.5	0.0	1.9	8.2	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
NB-ARC	PF00931.22	gi|564290724|ref|YP_008877037.1|	-	0.05	12.8	0.0	0.087	12.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|564290724|ref|YP_008877037.1|	-	0.076	13.4	0.0	0.14	12.6	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_29	PF13555.6	gi|564290724|ref|YP_008877037.1|	-	0.1	12.4	0.0	0.19	11.5	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PduV-EutP	PF10662.9	gi|564290724|ref|YP_008877037.1|	-	0.11	12.3	0.1	0.26	11.0	0.1	1.6	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_33	PF13671.6	gi|564290724|ref|YP_008877037.1|	-	0.16	12.1	0.0	0.45	10.7	0.0	1.9	2	0	0	2	2	1	0	AAA	domain
AAA_24	PF13479.6	gi|564290724|ref|YP_008877037.1|	-	0.18	11.5	0.0	0.32	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|564290724|ref|YP_008877037.1|	-	0.18	12.3	0.0	0.37	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564290724|ref|YP_008877037.1|	-	0.21	11.7	0.1	0.78	9.8	0.0	2.2	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
REV	PF00424.18	gi|564290725|ref|YP_008877038.1|	-	0.12	12.4	0.2	0.39	10.8	0.1	1.9	2	0	0	2	2	2	0	REV	protein	(anti-repression	trans-activator	protein)
ABC_transp_aux	PF09822.9	gi|564290726|ref|YP_008877039.1|	-	1.9e-06	27.5	0.0	3.9e-06	26.5	0.0	1.5	1	1	0	1	1	1	1	ABC-type	uncharacterized	transport	system
DUF4350	PF14258.6	gi|564290726|ref|YP_008877039.1|	-	0.00075	19.9	0.5	0.0027	18.1	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
ThuA	PF06283.11	gi|564290726|ref|YP_008877039.1|	-	0.0095	16.2	0.2	0.012	15.9	0.2	1.3	1	0	0	1	1	1	1	Trehalose	utilisation
Peptidase_S49	PF01343.18	gi|564290727|ref|YP_008877040.1|	-	1e-18	67.7	2.3	1e-18	67.7	2.3	2.4	2	1	0	2	2	2	1	Peptidase	family	S49
CLP_protease	PF00574.23	gi|564290727|ref|YP_008877040.1|	-	0.0022	17.9	0.1	0.008	16.1	0.0	1.8	2	0	0	2	2	2	1	Clp	protease
OKR_DC_1_N	PF03709.15	gi|564290727|ref|YP_008877040.1|	-	0.0056	16.9	0.0	0.024	14.9	0.0	1.9	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Catalase_C	PF18011.1	gi|564290727|ref|YP_008877040.1|	-	0.055	13.1	0.0	0.12	12.0	0.0	1.6	1	0	0	1	1	1	0	C-terminal	domain	found	in	long	catalases
Aldo_ket_red	PF00248.21	gi|564290728|ref|YP_008877041.1|	-	1.2e-21	77.2	0.0	1.6e-21	76.8	0.0	1.1	1	0	0	1	1	1	1	Aldo/keto	reductase	family
AP_endonuc_2	PF01261.24	gi|564290728|ref|YP_008877041.1|	-	0.038	13.4	0.1	2.5	7.5	0.0	2.4	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
Methyltransf_11	PF08241.12	gi|564290729|ref|YP_008877042.1|	-	1.8e-12	47.7	0.2	3e-12	47.0	0.2	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564290729|ref|YP_008877042.1|	-	8.9e-12	45.6	0.2	1.7e-11	44.7	0.2	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564290729|ref|YP_008877042.1|	-	3e-06	27.9	0.1	4.8e-06	27.2	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.6	gi|564290729|ref|YP_008877042.1|	-	0.00026	21.9	1.2	0.001	20.0	0.6	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290729|ref|YP_008877042.1|	-	0.00049	19.9	0.0	0.00063	19.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564290729|ref|YP_008877042.1|	-	0.001	18.9	0.0	0.0018	18.1	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564290729|ref|YP_008877042.1|	-	0.0011	18.3	0.0	0.0015	17.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.20	gi|564290729|ref|YP_008877042.1|	-	0.013	14.5	0.0	0.018	14.2	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_8	PF05148.15	gi|564290729|ref|YP_008877042.1|	-	0.036	13.9	0.0	0.053	13.4	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	methyltransferase
CMAS	PF02353.20	gi|564290729|ref|YP_008877042.1|	-	0.15	11.3	0.0	0.2	10.9	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_PK	PF05891.12	gi|564290729|ref|YP_008877042.1|	-	0.19	11.2	0.0	0.25	10.8	0.0	1.2	1	0	0	1	1	1	0	AdoMet	dependent	proline	di-methyltransferase
Cupin_2	PF07883.11	gi|564290730|ref|YP_008877043.1|	-	6.8e-07	28.9	2.7	6.8e-07	28.9	2.7	1.9	1	1	1	2	2	2	1	Cupin	domain
AraC_binding_2	PF14525.6	gi|564290730|ref|YP_008877043.1|	-	0.01	15.5	0.2	0.012	15.3	0.2	1.2	1	0	0	1	1	1	0	AraC-binding-like	domain
AraC_binding	PF02311.19	gi|564290730|ref|YP_008877043.1|	-	0.035	14.0	0.1	0.043	13.7	0.1	1.1	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|564290730|ref|YP_008877043.1|	-	0.036	13.7	0.0	0.043	13.4	0.0	1.3	1	0	0	1	1	1	0	Cupin
PCO_ADO	PF07847.12	gi|564290730|ref|YP_008877043.1|	-	0.042	13.3	0.0	0.045	13.2	0.0	1.1	1	0	0	1	1	1	0	PCO_ADO
Cupin_3	PF05899.12	gi|564290730|ref|YP_008877043.1|	-	0.085	12.6	0.2	0.31	10.8	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF861)
cNMP_binding	PF00027.29	gi|564290730|ref|YP_008877043.1|	-	0.11	12.6	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Cyclic	nucleotide-binding	domain
HpcH_HpaI	PF03328.14	gi|564290731|ref|YP_008877044.1|	-	4.1e-34	117.7	0.0	4.9e-34	117.4	0.0	1.0	1	0	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
TFIIB	PF00382.19	gi|564290732|ref|YP_008877045.1|	-	4.4e-26	90.7	0.1	4.5e-13	49.1	0.0	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564290732|ref|YP_008877045.1|	-	4.5e-17	61.3	2.1	9.1e-17	60.3	2.1	1.6	1	0	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|564290732|ref|YP_008877045.1|	-	0.00034	20.5	0.7	0.00069	19.5	0.7	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Cyclin_C	PF02984.19	gi|564290732|ref|YP_008877045.1|	-	0.00064	19.8	0.0	0.029	14.5	0.0	2.2	2	0	0	2	2	2	1	Cyclin,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|564290732|ref|YP_008877045.1|	-	0.041	13.4	4.4	0.071	12.6	0.2	2.8	3	0	0	3	3	3	0	Sigma-70,	region	4
Auto_anti-p27	PF06677.12	gi|564290732|ref|YP_008877045.1|	-	0.067	13.4	1.0	0.14	12.3	1.0	1.5	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
HTH_Tnp_ISL3	PF13542.6	gi|564290732|ref|YP_008877045.1|	-	0.095	12.1	0.0	0.19	11.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DZR	PF12773.7	gi|564290732|ref|YP_008877045.1|	-	0.13	12.3	0.4	0.22	11.6	0.4	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|564290732|ref|YP_008877045.1|	-	0.56	10.2	2.6	2.1	8.3	2.6	2.0	1	1	0	1	1	1	0	Nudix	N-terminal
zf-ribbon_3	PF13248.6	gi|564290732|ref|YP_008877045.1|	-	2.1	7.9	3.9	18	4.9	3.9	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
HTH_10	PF04967.12	gi|564290733|ref|YP_008877046.1|	-	5.3e-14	51.8	0.0	8.2e-14	51.1	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|564290733|ref|YP_008877046.1|	-	8.4e-06	25.4	0.2	0.00015	21.4	0.2	2.4	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_30	PF13556.6	gi|564290733|ref|YP_008877046.1|	-	5.1e-05	23.0	0.1	9.9e-05	22.1	0.1	1.4	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564290733|ref|YP_008877046.1|	-	0.0011	18.9	0.1	0.0025	17.7	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564290733|ref|YP_008877046.1|	-	0.0015	18.1	0.1	0.0025	17.3	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_8	PF02954.19	gi|564290733|ref|YP_008877046.1|	-	0.0017	18.1	0.1	0.004	16.9	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_WhiA	PF02650.14	gi|564290733|ref|YP_008877046.1|	-	0.0028	17.9	0.0	0.011	16.0	0.0	2.0	2	0	0	2	2	2	1	WhiA	C-terminal	HTH	domain
Sigma70_r4	PF04545.16	gi|564290733|ref|YP_008877046.1|	-	0.0028	17.1	0.2	0.0086	15.6	0.2	1.8	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_11	PF08279.12	gi|564290733|ref|YP_008877046.1|	-	0.003	17.5	0.1	0.0059	16.5	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564290733|ref|YP_008877046.1|	-	0.0033	17.5	0.3	0.02	14.9	0.1	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564290733|ref|YP_008877046.1|	-	0.0036	17.1	0.1	0.0066	16.2	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_psq	PF05225.16	gi|564290733|ref|YP_008877046.1|	-	0.0094	15.7	0.1	0.023	14.4	0.1	1.6	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
Sigma70_ECF	PF07638.11	gi|564290733|ref|YP_008877046.1|	-	0.01	15.8	0.1	0.017	15.0	0.1	1.4	1	0	0	1	1	1	1	ECF	sigma	factor
HTH_3	PF01381.22	gi|564290733|ref|YP_008877046.1|	-	0.022	14.8	0.0	0.043	13.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
HTH_Tnp_1_2	PF13022.6	gi|564290733|ref|YP_008877046.1|	-	0.035	14.3	0.0	0.057	13.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
HTH_28	PF13518.6	gi|564290733|ref|YP_008877046.1|	-	0.086	13.0	0.1	0.26	11.4	0.1	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564290733|ref|YP_008877046.1|	-	0.088	12.6	0.1	0.17	11.7	0.1	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
UPF0122	PF04297.14	gi|564290733|ref|YP_008877046.1|	-	0.093	13.0	0.0	0.17	12.2	0.0	1.3	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Peptidase_A2E	PF12382.8	gi|564290734|ref|YP_008877047.1|	-	0.11	12.5	0.1	0.16	12.0	0.1	1.2	1	0	0	1	1	1	0	Retrotransposon	peptidase
2-Hacid_dh_C	PF02826.19	gi|564290735|ref|YP_008877048.1|	-	2.5e-58	196.4	0.0	4.3e-58	195.6	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|564290735|ref|YP_008877048.1|	-	6.3e-32	110.0	0.1	9.2e-32	109.5	0.1	1.3	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564290735|ref|YP_008877048.1|	-	0.032	14.6	2.8	0.064	13.7	0.2	2.5	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
ThiS	PF02597.20	gi|564290736|ref|YP_008877049.1|	-	4.8e-16	59.1	0.1	5.5e-16	59.0	0.1	1.0	1	0	0	1	1	1	1	ThiS	family
ThiS	PF02597.20	gi|564290737|ref|YP_008877050.1|	-	1.3e-05	25.8	0.0	0.00011	22.7	0.0	2.1	1	1	0	1	1	1	1	ThiS	family
AFOR_C	PF01314.18	gi|564290742|ref|YP_008877055.1|	-	2.6e-116	388.8	5.4	3.2e-116	388.5	5.4	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|564290742|ref|YP_008877055.1|	-	7.5e-71	238.1	0.1	1.1e-70	237.5	0.1	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Ribosomal_L15e	PF00827.17	gi|564290743|ref|YP_008877056.1|	-	5e-79	264.5	7.4	5.6e-79	264.3	7.4	1.0	1	0	0	1	1	1	1	Ribosomal	L15
FtsK_4TM	PF13491.6	gi|564290744|ref|YP_008877057.1|	-	0.016	14.9	3.2	0.024	14.3	3.1	1.3	1	1	0	1	1	1	0	4TM	region	of	DNA	translocase	FtsK/SpoIIIE
Phage_holin_3_6	PF07332.11	gi|564290744|ref|YP_008877057.1|	-	0.15	12.1	5.5	0.23	11.5	5.5	1.2	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF5337	PF17272.2	gi|564290744|ref|YP_008877057.1|	-	1.6	8.6	5.0	0.23	11.3	0.6	1.9	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5337)
BaxI_1	PF12811.7	gi|564291383|ref|YP_008877058.1|	-	0.12	12.0	5.2	0.13	11.8	5.2	1.0	1	0	0	1	1	1	0	Bax	inhibitor	1	like
BCD	PF15461.6	gi|564290745|ref|YP_008877059.1|	-	5.9e-87	291.6	20.0	7.7e-87	291.2	20.0	1.1	1	0	0	1	1	1	1	Beta-carotene	15,15'-dioxygenase
SQS_PSY	PF00494.19	gi|564290747|ref|YP_008877061.1|	-	1.5e-63	214.8	8.9	1.9e-63	214.4	8.9	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
EcoEI_R_C	PF08463.10	gi|564290747|ref|YP_008877061.1|	-	0.06	13.5	0.1	0.17	12.0	0.0	1.8	2	0	0	2	2	2	0	EcoEI	R	protein	C-terminal
BAT	PF15915.5	gi|564290748|ref|YP_008877062.1|	-	7.5e-42	142.9	7.2	7.5e-42	142.9	7.2	2.3	2	1	0	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_10	PF04967.12	gi|564290748|ref|YP_008877062.1|	-	8.8e-17	60.7	0.0	1.9e-16	59.6	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GAF_2	PF13185.6	gi|564290748|ref|YP_008877062.1|	-	2e-16	60.5	0.8	4.8e-16	59.3	0.8	1.7	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.10	gi|564290748|ref|YP_008877062.1|	-	4.4e-12	46.2	0.0	1.4e-11	44.7	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
GAF_3	PF13492.6	gi|564290748|ref|YP_008877062.1|	-	1.5e-07	31.8	1.0	5.4e-07	30.0	0.4	2.1	2	0	0	2	2	2	1	GAF	domain
GAF	PF01590.26	gi|564290748|ref|YP_008877062.1|	-	3.9e-06	27.5	0.2	1.1e-05	26.1	0.2	1.8	1	0	0	1	1	1	1	GAF	domain
PAS_9	PF13426.7	gi|564290748|ref|YP_008877062.1|	-	5.7e-06	26.5	0.0	1.3e-05	25.4	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|564290748|ref|YP_008877062.1|	-	0.002	18.1	0.0	0.0053	16.8	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564290748|ref|YP_008877062.1|	-	0.018	15.1	0.0	0.047	13.7	0.0	1.8	1	0	0	1	1	1	0	PAS	domain
Big_2	PF02368.18	gi|564290748|ref|YP_008877062.1|	-	0.14	12.0	3.5	0.28	11.1	1.0	2.6	3	0	0	3	3	3	0	Bacterial	Ig-like	domain	(group	2)
ADD_ATRX	PF17981.1	gi|564290749|ref|YP_008877063.1|	-	0.064	13.1	0.5	1.5	8.8	0.0	2.2	2	0	0	2	2	2	0	Cysteine	Rich	ADD	domain
RNB	PF00773.19	gi|564290750|ref|YP_008877064.1|	-	1.3e-79	268.0	0.0	2.2e-78	263.9	0.0	2.0	1	1	0	1	1	1	1	RNB	domain
ABC_tran	PF00005.27	gi|564290751|ref|YP_008877065.1|	-	6.5e-29	101.2	0.0	8.5e-29	100.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290751|ref|YP_008877065.1|	-	2.5e-16	60.4	1.2	1.1e-11	45.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_15	PF13175.6	gi|564290751|ref|YP_008877065.1|	-	0.0062	16.3	0.0	1.6	8.4	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564290751|ref|YP_008877065.1|	-	0.0063	17.0	0.0	0.0074	16.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564290751|ref|YP_008877065.1|	-	0.096	13.1	0.1	0.46	10.9	0.1	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_13	PF13166.6	gi|564290751|ref|YP_008877065.1|	-	0.17	10.5	0.0	4.3	5.9	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
DUF3685	PF12452.8	gi|564290752|ref|YP_008877066.1|	-	1.6	8.4	5.2	3.4	7.3	5.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3685)
DUF885	PF05960.11	gi|564290753|ref|YP_008877067.1|	-	0.014	15.1	3.2	0.016	14.9	3.2	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
Lactamase_B	PF00753.27	gi|564290754|ref|YP_008877068.1|	-	1.3e-10	41.6	12.4	3.8e-09	36.8	12.4	2.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|564290754|ref|YP_008877068.1|	-	9e-08	32.6	0.0	1.6e-07	31.8	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|564290754|ref|YP_008877068.1|	-	0.014	14.9	1.2	0.03	13.8	1.2	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|564290754|ref|YP_008877068.1|	-	0.14	12.0	0.0	0.28	11.1	0.0	1.4	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
HTH_20	PF12840.7	gi|564290755|ref|YP_008877069.1|	-	0.0075	16.3	0.2	0.011	15.7	0.2	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3107	PF11305.8	gi|564290755|ref|YP_008877069.1|	-	0.02	15.1	0.5	0.049	13.9	0.1	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3107)
GGDEF_2	PF17853.1	gi|564290755|ref|YP_008877069.1|	-	0.022	15.0	0.2	0.03	14.6	0.2	1.3	1	1	0	1	1	1	0	GGDEF-like	domain
PKD	PF00801.20	gi|564290757|ref|YP_008877071.1|	-	9.4e-06	25.4	13.9	7.2e-05	22.6	0.8	3.4	3	0	0	3	3	3	2	PKD	domain
ChitinaseA_N	PF08329.10	gi|564290757|ref|YP_008877071.1|	-	0.00074	19.2	4.7	0.033	13.8	0.2	3.2	3	0	0	3	3	3	1	Chitinase	A,	N-terminal	domain
DUF4625	PF15418.6	gi|564290757|ref|YP_008877071.1|	-	0.039	14.2	0.1	0.14	12.4	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4625)
He_PIG	PF05345.12	gi|564290757|ref|YP_008877071.1|	-	0.063	13.5	6.1	0.27	11.5	1.4	3.0	2	1	0	2	2	2	0	Putative	Ig	domain
Y_Y_Y	PF07495.13	gi|564290757|ref|YP_008877071.1|	-	0.073	13.0	0.0	0.26	11.3	0.0	2.0	1	0	0	1	1	1	0	Y_Y_Y	domain
Big_3_5	PF16640.5	gi|564290757|ref|YP_008877071.1|	-	0.23	11.7	11.3	0.51	10.6	1.3	2.7	2	0	0	2	2	2	0	Bacterial	Ig-like	domain	(group	3)
Ig_3	PF13927.6	gi|564290757|ref|YP_008877071.1|	-	0.42	11.2	3.7	1.6	9.4	0.0	3.1	3	0	0	3	3	3	0	Immunoglobulin	domain
DUF11	PF01345.18	gi|564290757|ref|YP_008877071.1|	-	4.2	7.7	8.4	6.1	7.2	3.9	2.7	1	1	1	3	3	3	0	Domain	of	unknown	function	DUF11
Anti-TRAP	PF15777.5	gi|564290758|ref|YP_008877072.1|	-	0.00083	19.3	5.0	0.002	18.1	0.9	3.1	3	0	0	3	3	3	1	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
DZR	PF12773.7	gi|564290758|ref|YP_008877072.1|	-	0.003	17.5	1.2	0.11	12.6	0.3	2.3	2	0	0	2	2	2	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|564290758|ref|YP_008877072.1|	-	0.0035	17.4	5.1	0.029	14.5	1.8	2.4	2	0	0	2	2	2	1	Zinc	ribbon	domain
HypA	PF01155.19	gi|564290758|ref|YP_008877072.1|	-	0.016	15.2	4.0	0.052	13.6	0.3	2.1	2	0	0	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TF_Zn_Ribbon	PF08271.12	gi|564290758|ref|YP_008877072.1|	-	0.079	12.5	5.8	2.4	7.7	0.1	4.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
RNHCP	PF12647.7	gi|564290758|ref|YP_008877072.1|	-	0.1	12.6	1.0	0.74	9.8	0.3	2.2	2	0	0	2	2	2	0	RNHCP	domain
zf_UBZ	PF18439.1	gi|564290758|ref|YP_008877072.1|	-	0.14	11.8	5.3	28	4.4	0.2	3.3	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
DUF1610	PF07754.11	gi|564290758|ref|YP_008877072.1|	-	0.15	12.0	0.2	0.15	12.0	0.2	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DUF1660	PF07874.11	gi|564290758|ref|YP_008877072.1|	-	0.23	12.0	0.4	1.4	9.4	0.4	2.2	1	1	0	1	1	1	0	Prophage	protein	(DUF1660)
RNA_POL_M_15KD	PF02150.16	gi|564290758|ref|YP_008877072.1|	-	0.26	11.2	4.0	30	4.6	0.1	3.4	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
zf-ISL3	PF14690.6	gi|564290758|ref|YP_008877072.1|	-	0.54	11.0	3.0	55	4.5	0.1	3.1	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-FPG_IleRS	PF06827.14	gi|564290758|ref|YP_008877072.1|	-	0.99	9.3	7.3	3.2	7.7	0.5	2.6	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
A2L_zn_ribbon	PF08792.10	gi|564290758|ref|YP_008877072.1|	-	1.6	8.5	5.7	7.4	6.4	0.3	3.1	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.19	gi|564290758|ref|YP_008877072.1|	-	1.7	8.5	5.1	44	4.0	0.1	3.1	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
PADR1	PF08063.12	gi|564290758|ref|YP_008877072.1|	-	1.7	8.5	4.2	7.6	6.4	0.1	3.0	3	0	0	3	3	3	0	PADR1	(NUC008)	domain
zinc_ribbon_4	PF13717.6	gi|564290758|ref|YP_008877072.1|	-	2.7	8.0	5.6	57	3.7	2.0	3.1	2	1	1	3	3	3	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|564290758|ref|YP_008877072.1|	-	2.9	8.2	8.0	30	5.0	0.4	3.5	2	1	1	3	3	3	0	zinc-ribbon
Zn_Tnp_IS1595	PF12760.7	gi|564290758|ref|YP_008877072.1|	-	3.2	7.8	6.5	90	3.2	4.3	3.0	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
DUF5611	PF18446.1	gi|564290759|ref|YP_008877073.1|	-	1.1e-28	100.1	0.3	1.3e-28	99.9	0.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5611)
ComR_TPR	PF18710.1	gi|564290759|ref|YP_008877073.1|	-	0.0045	16.6	0.0	0.0069	16.0	0.0	1.2	1	0	0	1	1	1	1	ComR	tetratricopeptide
ABC2_membrane	PF01061.24	gi|564290760|ref|YP_008877074.1|	-	7.3e-26	90.9	21.2	9e-26	90.6	21.2	1.1	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|564290760|ref|YP_008877074.1|	-	0.066	12.3	20.0	0.041	13.0	18.5	1.3	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|564290761|ref|YP_008877075.1|	-	6.5e-32	110.9	0.0	9.6e-32	110.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290761|ref|YP_008877075.1|	-	4.8e-13	49.6	0.8	1.1e-07	32.0	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|564290761|ref|YP_008877075.1|	-	1.5e-06	28.8	0.0	4.1e-06	27.4	0.0	1.7	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4162)
AAA_30	PF13604.6	gi|564290761|ref|YP_008877075.1|	-	0.0019	17.9	0.1	0.035	13.8	0.1	2.4	1	1	0	1	1	1	1	AAA	domain
DLIC	PF05783.11	gi|564290761|ref|YP_008877075.1|	-	0.0037	16.1	0.0	0.0056	15.6	0.0	1.2	1	0	0	1	1	1	1	Dynein	light	intermediate	chain	(DLIC)
AAA_23	PF13476.6	gi|564290761|ref|YP_008877075.1|	-	0.0061	17.1	0.1	0.0099	16.4	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.6	gi|564290761|ref|YP_008877075.1|	-	0.0064	16.2	0.0	0.076	12.7	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290761|ref|YP_008877075.1|	-	0.0078	16.1	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
NTPase_1	PF03266.15	gi|564290761|ref|YP_008877075.1|	-	0.033	14.1	0.1	0.34	10.8	0.0	2.2	2	1	0	2	2	2	0	NTPase
AAA_29	PF13555.6	gi|564290761|ref|YP_008877075.1|	-	0.034	13.9	0.0	0.073	12.8	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
IstB_IS21	PF01695.17	gi|564290761|ref|YP_008877075.1|	-	0.038	13.7	0.2	9.2	6.0	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
MMR_HSR1	PF01926.23	gi|564290761|ref|YP_008877075.1|	-	0.052	13.6	0.0	0.17	12.0	0.0	1.9	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
SMC_N	PF02463.19	gi|564290761|ref|YP_008877075.1|	-	0.074	12.5	0.0	1.8	7.9	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
IIGP	PF05049.13	gi|564290761|ref|YP_008877075.1|	-	0.12	11.4	0.1	0.18	10.8	0.1	1.1	1	0	0	1	1	1	0	Interferon-inducible	GTPase	(IIGP)
AAA_27	PF13514.6	gi|564290761|ref|YP_008877075.1|	-	0.13	11.9	0.1	0.2	11.2	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564290761|ref|YP_008877075.1|	-	0.14	12.1	0.0	0.22	11.4	0.0	1.3	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
ATP_bind_1	PF03029.17	gi|564290761|ref|YP_008877075.1|	-	0.17	11.6	0.0	0.79	9.5	0.0	2.0	3	0	0	3	3	3	0	Conserved	hypothetical	ATP	binding	protein
AAA_15	PF13175.6	gi|564290761|ref|YP_008877075.1|	-	0.33	10.6	0.0	5.5	6.6	0.0	2.0	1	1	0	2	2	2	0	AAA	ATPase	domain
SepF	PF04472.12	gi|564290762|ref|YP_008877076.1|	-	8.4e-14	51.6	1.7	1.2e-13	51.1	1.7	1.2	1	0	0	1	1	1	1	Cell	division	protein	SepF
Lar_N	PF09861.9	gi|564290762|ref|YP_008877076.1|	-	0.042	13.0	0.1	0.055	12.6	0.1	1.3	1	0	0	1	1	1	0	Lactate	racemase	N-terminal	domain
DUF4791	PF16039.5	gi|564290763|ref|YP_008877077.1|	-	0.09	12.3	0.1	0.11	12.0	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4791)
PUA	PF01472.20	gi|564290764|ref|YP_008877078.1|	-	7.7e-19	67.4	1.0	1.3e-18	66.7	1.0	1.4	1	0	0	1	1	1	1	PUA	domain
UPF0113	PF03657.13	gi|564290764|ref|YP_008877078.1|	-	0.0054	17.0	0.1	0.0084	16.4	0.1	1.3	1	0	0	1	1	1	1	UPF0113	PUA	domain
Peripla_BP_2	PF01497.18	gi|564290765|ref|YP_008877079.1|	-	8.4e-26	91.0	0.1	1.5e-25	90.2	0.1	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein
ThiF	PF00899.21	gi|564290767|ref|YP_008877081.1|	-	6.5e-68	228.7	0.0	8.4e-68	228.3	0.0	1.0	1	0	0	1	1	1	1	ThiF	family
Sacchrp_dh_NADP	PF03435.18	gi|564290767|ref|YP_008877081.1|	-	0.0025	18.1	0.4	0.0076	16.5	0.4	1.8	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
PglD_N	PF17836.1	gi|564290767|ref|YP_008877081.1|	-	0.019	15.6	0.1	0.031	14.9	0.1	1.4	1	0	0	1	1	1	0	PglD	N-terminal	domain
NAD_binding_7	PF13241.6	gi|564290767|ref|YP_008877081.1|	-	0.042	14.3	0.5	0.32	11.4	0.5	2.0	1	1	0	1	1	1	0	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|564290767|ref|YP_008877081.1|	-	0.082	13.0	0.1	0.18	11.8	0.0	1.5	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
MCPsignal	PF00015.21	gi|564290768|ref|YP_008877082.1|	-	4.6e-51	173.0	49.5	1.2e-47	162.0	30.0	3.7	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Laminin_II	PF06009.12	gi|564290768|ref|YP_008877082.1|	-	4e-07	30.1	33.5	0.0024	17.9	3.6	4.2	2	2	2	4	4	4	4	Laminin	Domain	II
DUF948	PF06103.11	gi|564290768|ref|YP_008877082.1|	-	9.4e-07	29.0	32.5	0.0014	18.8	4.2	4.8	2	2	3	5	5	5	4	Bacterial	protein	of	unknown	function	(DUF948)
WXG100	PF06013.12	gi|564290768|ref|YP_008877082.1|	-	9.6e-05	22.5	27.0	0.71	10.2	2.2	6.2	3	2	0	5	5	5	2	Proteins	of	100	residues	with	WXG
DASH_Duo1	PF08651.10	gi|564290768|ref|YP_008877082.1|	-	0.00022	20.9	18.4	0.022	14.5	0.5	5.2	4	1	1	5	5	5	1	DASH	complex	subunit	Duo1
Syntaxin_2	PF14523.6	gi|564290768|ref|YP_008877082.1|	-	0.00088	19.6	17.1	0.84	10.0	0.1	4.6	2	2	1	3	3	3	2	Syntaxin-like	protein
CorA	PF01544.18	gi|564290768|ref|YP_008877082.1|	-	0.001	18.5	19.7	0.0071	15.7	8.7	2.3	2	0	0	2	2	2	2	CorA-like	Mg2+	transporter	protein
DUF1664	PF07889.12	gi|564290768|ref|YP_008877082.1|	-	0.0022	18.0	29.7	0.036	14.1	4.9	4.3	2	2	2	4	4	4	3	Protein	of	unknown	function	(DUF1664)
ATG16	PF08614.11	gi|564290768|ref|YP_008877082.1|	-	0.0026	18.0	21.5	0.0068	16.6	6.3	2.5	1	1	1	2	2	2	2	Autophagy	protein	16	(ATG16)
Spc7	PF08317.11	gi|564290768|ref|YP_008877082.1|	-	0.004	16.1	30.6	0.034	13.1	10.3	2.4	1	1	0	2	2	2	2	Spc7	kinetochore	protein
LPP	PF04728.13	gi|564290768|ref|YP_008877082.1|	-	0.004	17.5	3.7	0.004	17.5	3.7	6.0	3	2	2	5	5	4	1	Lipoprotein	leucine-zipper
Fib_alpha	PF08702.10	gi|564290768|ref|YP_008877082.1|	-	0.0064	16.7	22.3	0.019	15.1	4.3	3.5	2	2	2	4	4	4	3	Fibrinogen	alpha/beta	chain	family
BLOC1_2	PF10046.9	gi|564290768|ref|YP_008877082.1|	-	0.0091	16.3	30.2	0.24	11.7	2.2	4.7	2	2	1	4	4	4	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
COG5	PF10392.9	gi|564290768|ref|YP_008877082.1|	-	0.015	15.5	9.5	0.025	14.7	0.7	3.3	2	2	1	3	3	3	0	Golgi	transport	complex	subunit	5
KxDL	PF10241.9	gi|564290768|ref|YP_008877082.1|	-	0.015	15.5	4.1	0.93	9.8	0.2	3.7	2	2	1	3	3	3	0	Uncharacterized	conserved	protein
Sec34	PF04136.15	gi|564290768|ref|YP_008877082.1|	-	0.024	14.5	18.1	0.64	9.9	1.2	4.4	2	2	2	4	4	4	0	Sec34-like	family
UPF0242	PF06785.11	gi|564290768|ref|YP_008877082.1|	-	0.027	14.6	23.0	4.2	7.4	5.8	3.1	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
T3SSipB	PF16535.5	gi|564290768|ref|YP_008877082.1|	-	0.03	14.8	31.3	1.8	9.0	11.5	3.3	1	1	2	3	3	3	0	Type	III	cell	invasion	protein	SipB
DUF745	PF05335.13	gi|564290768|ref|YP_008877082.1|	-	0.048	13.4	33.8	0.085	12.6	2.7	4.0	1	1	2	4	4	4	0	Protein	of	unknown	function	(DUF745)
DASH_Dam1	PF08653.10	gi|564290768|ref|YP_008877082.1|	-	0.058	13.2	6.7	3.6	7.5	0.1	4.5	4	1	0	4	4	4	0	DASH	complex	subunit	Dam1
TMPIT	PF07851.13	gi|564290768|ref|YP_008877082.1|	-	0.058	12.6	15.0	0.1	11.9	2.2	2.8	1	1	0	2	2	2	0	TMPIT-like	protein
ERM	PF00769.19	gi|564290768|ref|YP_008877082.1|	-	0.13	12.1	26.8	0.33	10.7	7.1	2.3	1	1	0	2	2	2	0	Ezrin/radixin/moesin	family
CENP-K	PF11802.8	gi|564290768|ref|YP_008877082.1|	-	0.18	11.3	8.8	4.4	6.8	8.5	2.3	1	1	0	1	1	1	0	Centromere-associated	protein	K
FUSC	PF04632.12	gi|564290768|ref|YP_008877082.1|	-	0.18	10.3	12.9	0.36	9.3	4.8	2.0	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
Syntaxin-6_N	PF09177.11	gi|564290768|ref|YP_008877082.1|	-	0.23	12.0	27.2	3	8.4	2.9	4.2	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
YkyA	PF10368.9	gi|564290768|ref|YP_008877082.1|	-	0.24	11.0	38.9	0.27	10.9	2.1	3.7	1	1	1	2	2	2	0	Putative	cell-wall	binding	lipoprotein
NPV_P10	PF05531.12	gi|564290768|ref|YP_008877082.1|	-	0.27	11.7	32.1	0.61	10.6	3.3	5.4	2	2	4	6	6	5	0	Nucleopolyhedrovirus	P10	protein
Prominin	PF05478.11	gi|564290768|ref|YP_008877082.1|	-	0.32	8.9	17.9	0.26	9.2	12.2	2.0	1	1	1	2	2	2	0	Prominin
APG17	PF04108.12	gi|564290768|ref|YP_008877082.1|	-	0.38	9.8	27.8	0.65	9.0	3.6	3.8	1	1	3	4	4	4	0	Autophagy	protein	Apg17
AIP3	PF03915.13	gi|564290768|ref|YP_008877082.1|	-	0.44	9.6	26.7	0.53	9.3	10.5	2.1	1	1	1	2	2	2	0	Actin	interacting	protein	3
Mce4_CUP1	PF11887.8	gi|564290768|ref|YP_008877082.1|	-	0.51	9.7	20.0	3	7.2	4.5	3.8	1	1	4	5	5	5	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
TPR_MLP1_2	PF07926.12	gi|564290768|ref|YP_008877082.1|	-	0.64	10.1	32.1	1.6	8.8	12.7	3.2	2	2	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
Cauli_AT	PF03233.13	gi|564290768|ref|YP_008877082.1|	-	0.73	9.8	18.3	0.42	10.5	3.4	3.6	2	1	1	4	4	3	0	Aphid	transmission	protein
Dynamin_M	PF01031.20	gi|564290768|ref|YP_008877082.1|	-	0.96	8.6	9.7	0.61	9.3	0.3	3.4	1	1	2	3	3	3	0	Dynamin	central	region
Jnk-SapK_ap_N	PF09744.9	gi|564290768|ref|YP_008877082.1|	-	0.97	9.6	23.3	1.2	9.3	2.8	3.6	1	1	2	4	4	4	0	JNK_SAPK-associated	protein-1
DUF489	PF04356.12	gi|564290768|ref|YP_008877082.1|	-	1	9.3	7.9	1	9.4	1.4	2.9	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
Seryl_tRNA_N	PF02403.22	gi|564290768|ref|YP_008877082.1|	-	1.1	9.5	28.5	0.24	11.7	5.5	3.9	1	1	3	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
ING	PF12998.7	gi|564290768|ref|YP_008877082.1|	-	1.2	9.8	14.3	6.3	7.4	1.9	4.0	1	1	3	4	4	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Vps51	PF08700.11	gi|564290768|ref|YP_008877082.1|	-	1.3	9.1	11.9	1.1	9.4	0.3	4.5	4	1	0	5	5	4	0	Vps51/Vps67
AATF-Che1	PF13339.6	gi|564290768|ref|YP_008877082.1|	-	1.3	9.7	13.4	1.6	9.5	3.4	2.9	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
DUF2913	PF11140.8	gi|564290768|ref|YP_008877082.1|	-	1.3	8.7	5.1	1.6	8.5	1.7	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2913)
FH2	PF02181.23	gi|564290768|ref|YP_008877082.1|	-	1.4	8.0	12.3	1.9	7.5	2.0	2.5	1	1	2	3	3	3	0	Formin	Homology	2	Domain
BAR_2	PF10455.9	gi|564290768|ref|YP_008877082.1|	-	1.4	8.0	16.9	2.3	7.3	7.4	2.8	1	1	0	2	2	2	0	Bin/amphiphysin/Rvs	domain	for	vesicular	trafficking
Mod_r	PF07200.13	gi|564290768|ref|YP_008877082.1|	-	1.5	9.0	19.2	3.2	7.9	2.8	3.0	2	1	1	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
GAS	PF13851.6	gi|564290768|ref|YP_008877082.1|	-	1.6	8.1	17.5	4	6.7	10.3	2.9	1	1	2	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
BORCS7	PF16088.5	gi|564290768|ref|YP_008877082.1|	-	1.8	8.8	13.7	0.64	10.3	3.2	3.2	2	1	0	2	2	2	0	BLOC-1-related	complex	sub-unit	7
COG2	PF06148.11	gi|564290768|ref|YP_008877082.1|	-	1.9	8.6	21.5	6.8	6.8	1.0	4.5	2	2	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RecG_N	PF17190.4	gi|564290768|ref|YP_008877082.1|	-	2	9.2	9.5	9.7	7.0	0.2	4.0	2	2	1	4	4	3	0	RecG	N-terminal	helical	domain
TRPM_tetra	PF16519.5	gi|564290768|ref|YP_008877082.1|	-	2.8	8.1	8.5	0.54	10.4	2.1	2.9	2	0	0	2	2	2	0	Tetramerisation	domain	of	TRPM
CREPT	PF16566.5	gi|564290768|ref|YP_008877082.1|	-	2.8	8.1	12.2	7.2	6.8	2.9	3.1	1	1	4	5	5	5	0	Cell-cycle	alteration	and	expression-elevated	protein	in	tumour
FlgN	PF05130.12	gi|564290768|ref|YP_008877082.1|	-	2.9	8.4	25.2	9.9	6.7	5.2	3.6	1	1	3	4	4	4	0	FlgN	protein
ApoO	PF09769.9	gi|564290768|ref|YP_008877082.1|	-	5.5	7.0	7.7	27	4.8	0.6	3.7	2	2	1	3	3	3	0	Apolipoprotein	O
DUF5082	PF16888.5	gi|564290768|ref|YP_008877082.1|	-	6.4	7.1	31.4	3.8	7.8	0.4	4.5	2	2	1	4	4	4	0	Domain	of	unknown	function	(DUF5082)
DUF2203	PF09969.9	gi|564290768|ref|YP_008877082.1|	-	6.7	7.5	24.9	4.8	7.9	2.6	4.1	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
DUF4200	PF13863.6	gi|564290768|ref|YP_008877082.1|	-	6.7	7.1	19.9	12	6.3	4.7	3.6	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4200)
DUF812	PF05667.11	gi|564290768|ref|YP_008877082.1|	-	6.9	5.4	31.0	0.27	10.1	11.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
RAC_head	PF16717.5	gi|564290768|ref|YP_008877082.1|	-	7.2	7.7	23.4	0.48	11.4	3.1	4.0	2	2	1	3	3	3	0	Ribosome-associated	complex	head	domain
Sec20	PF03908.13	gi|564290768|ref|YP_008877082.1|	-	7.6	6.5	14.5	3.5	7.6	0.5	4.3	2	2	2	4	4	4	0	Sec20
DUF1759	PF03564.15	gi|564290768|ref|YP_008877082.1|	-	8.3	6.3	15.5	8.5	6.3	0.4	4.3	2	2	3	5	5	5	0	Protein	of	unknown	function	(DUF1759)
LMBR1	PF04791.16	gi|564290768|ref|YP_008877082.1|	-	9.5	5.0	15.7	1.7e+02	0.9	15.7	2.1	1	1	0	1	1	1	0	LMBR1-like	membrane	protein
TBCC_N	PF16752.5	gi|564290768|ref|YP_008877082.1|	-	9.8	6.7	25.0	0.99	9.9	1.6	4.1	1	1	3	4	4	4	0	Tubulin-specific	chaperone	C	N-terminal	domain
Peptidase_M32	PF02074.15	gi|564290769|ref|YP_008877083.1|	-	1.1e-173	578.5	0.0	1.2e-173	578.4	0.0	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
Peptidase_M20	PF01546.28	gi|564290770|ref|YP_008877084.1|	-	4e-26	92.0	4.8	6e-26	91.4	4.8	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|564290770|ref|YP_008877084.1|	-	1.9e-16	59.9	0.1	3.9e-16	58.9	0.1	1.5	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|564290770|ref|YP_008877084.1|	-	0.016	14.9	0.3	0.028	14.1	0.3	1.4	1	0	0	1	1	1	0	Peptidase	family	M28
T2SSE	PF00437.20	gi|564290771|ref|YP_008877085.1|	-	1.2e-10	40.9	0.0	2.1e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
IstB_IS21	PF01695.17	gi|564290771|ref|YP_008877085.1|	-	0.00025	20.8	0.0	0.00046	20.0	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
PIN	PF01850.21	gi|564290771|ref|YP_008877085.1|	-	0.0012	19.3	0.0	0.0026	18.3	0.0	1.6	1	0	0	1	1	1	1	PIN	domain
KH_1	PF00013.29	gi|564290771|ref|YP_008877085.1|	-	0.0031	17.3	0.2	0.012	15.5	0.2	2.1	1	0	0	1	1	1	1	KH	domain
AAA_16	PF13191.6	gi|564290771|ref|YP_008877085.1|	-	0.004	17.6	0.1	0.021	15.2	0.0	2.2	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564290771|ref|YP_008877085.1|	-	0.0046	17.1	0.0	0.014	15.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.6	gi|564290771|ref|YP_008877085.1|	-	0.011	15.4	0.0	0.028	14.2	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
FliMN_C	PF01052.20	gi|564290771|ref|YP_008877085.1|	-	0.021	14.8	0.1	2.4	8.2	0.0	2.8	2	0	0	2	2	2	0	Type	III	flagellar	switch	regulator	(C-ring)	FliN	C-term
Thymidylate_kin	PF02223.17	gi|564290771|ref|YP_008877085.1|	-	0.027	14.2	0.0	0.1	12.2	0.0	1.8	1	1	1	2	2	2	0	Thymidylate	kinase
NTPase_1	PF03266.15	gi|564290771|ref|YP_008877085.1|	-	0.037	13.9	0.0	0.083	12.8	0.0	1.6	1	0	0	1	1	1	0	NTPase
ATPase	PF06745.13	gi|564290771|ref|YP_008877085.1|	-	0.068	12.5	0.0	0.18	11.1	0.0	1.6	1	0	0	1	1	1	0	KaiC
Zeta_toxin	PF06414.12	gi|564290771|ref|YP_008877085.1|	-	0.077	12.3	0.0	0.15	11.3	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_22	PF13401.6	gi|564290771|ref|YP_008877085.1|	-	0.1	12.9	0.0	0.29	11.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564290771|ref|YP_008877085.1|	-	0.13	12.8	0.0	0.28	11.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|564290771|ref|YP_008877085.1|	-	0.14	11.6	0.0	0.23	10.9	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
YqcI_YcgG	PF08892.11	gi|564290772|ref|YP_008877086.1|	-	2.5e-77	259.4	0.0	2.9e-77	259.2	0.0	1.0	1	0	0	1	1	1	1	YqcI/YcgG	family
Isochorismatase	PF00857.20	gi|564290773|ref|YP_008877087.1|	-	8.2e-39	133.6	0.0	9.4e-39	133.4	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
HTH_24	PF13412.6	gi|564290774|ref|YP_008877088.1|	-	0.0007	19.1	0.0	0.00099	18.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564290774|ref|YP_008877088.1|	-	0.0017	18.2	0.1	0.0022	17.9	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564290774|ref|YP_008877088.1|	-	0.015	15.2	0.0	0.024	14.5	0.0	1.4	1	1	0	1	1	1	0	MarR	family
HTH_12	PF08461.10	gi|564290774|ref|YP_008877088.1|	-	0.016	15.1	0.1	0.039	13.9	0.1	1.8	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
HTH_11	PF08279.12	gi|564290774|ref|YP_008877088.1|	-	0.037	14.0	0.0	0.052	13.5	0.0	1.2	1	0	0	1	1	1	0	HTH	domain
GntR	PF00392.21	gi|564290774|ref|YP_008877088.1|	-	0.052	13.2	0.1	0.076	12.7	0.1	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|564290774|ref|YP_008877088.1|	-	0.12	12.9	0.0	0.16	12.5	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
ABC_tran	PF00005.27	gi|564290776|ref|YP_008877090.1|	-	2.5e-38	131.7	0.0	2e-20	73.7	0.0	2.9	2	1	0	2	2	2	2	ABC	transporter
SMC_N	PF02463.19	gi|564290776|ref|YP_008877090.1|	-	4e-13	49.3	3.2	0.0012	18.3	0.0	4.2	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.6	gi|564290776|ref|YP_008877090.1|	-	2.5e-12	47.2	0.3	0.0099	15.7	0.0	4.2	3	1	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RLI	PF04068.15	gi|564290776|ref|YP_008877090.1|	-	7.1e-11	41.7	0.7	1.5e-10	40.7	0.7	1.5	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AAA_16	PF13191.6	gi|564290776|ref|YP_008877090.1|	-	6.7e-07	29.8	0.1	0.044	14.2	0.0	3.1	2	1	1	3	3	3	2	AAA	ATPase	domain
AAA	PF00004.29	gi|564290776|ref|YP_008877090.1|	-	1.8e-06	28.4	0.0	0.06	13.8	0.0	2.7	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|564290776|ref|YP_008877090.1|	-	5.7e-06	26.6	0.0	0.0071	16.6	0.0	2.7	3	0	0	3	3	2	1	AAA	domain
RNA_helicase	PF00910.22	gi|564290776|ref|YP_008877090.1|	-	7.2e-06	26.4	0.0	0.17	12.3	0.0	2.6	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.6	gi|564290776|ref|YP_008877090.1|	-	3.1e-05	24.5	0.0	0.087	13.4	0.0	3.1	3	0	0	3	3	2	1	AAA	domain
AAA_24	PF13479.6	gi|564290776|ref|YP_008877090.1|	-	4.8e-05	23.2	0.0	0.056	13.2	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290776|ref|YP_008877090.1|	-	5.7e-05	23.1	0.0	0.11	12.4	0.0	2.4	2	0	0	2	2	2	2	RsgA	GTPase
Rad17	PF03215.15	gi|564290776|ref|YP_008877090.1|	-	6.2e-05	23.0	0.0	0.19	11.6	0.0	2.7	2	1	1	3	3	3	2	Rad17	P-loop	domain
AAA_23	PF13476.6	gi|564290776|ref|YP_008877090.1|	-	0.0001	22.9	0.3	0.22	12.0	0.1	2.4	2	0	0	2	2	2	2	AAA	domain
RuvB_N	PF05496.12	gi|564290776|ref|YP_008877090.1|	-	0.00024	20.9	0.0	0.29	10.9	0.0	2.8	3	0	0	3	3	3	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
Fer4_6	PF12837.7	gi|564290776|ref|YP_008877090.1|	-	0.00034	20.5	12.6	0.0051	16.8	2.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
AAA_33	PF13671.6	gi|564290776|ref|YP_008877090.1|	-	0.00046	20.4	0.0	0.14	12.3	0.1	2.8	2	1	0	2	2	2	1	AAA	domain
Fer4	PF00037.27	gi|564290776|ref|YP_008877090.1|	-	0.00065	19.4	1.3	0.00065	19.4	1.3	2.9	3	0	0	3	3	3	1	4Fe-4S	binding	domain
NACHT	PF05729.12	gi|564290776|ref|YP_008877090.1|	-	0.00072	19.5	0.2	1.5	8.7	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_15	PF13175.6	gi|564290776|ref|YP_008877090.1|	-	0.002	17.9	0.1	1.2	8.8	0.0	2.9	2	1	0	3	3	3	1	AAA	ATPase	domain
NB-ARC	PF00931.22	gi|564290776|ref|YP_008877090.1|	-	0.003	16.8	0.0	0.19	10.9	0.0	2.2	2	0	0	2	2	2	1	NB-ARC	domain
AAA_28	PF13521.6	gi|564290776|ref|YP_008877090.1|	-	0.0048	17.2	0.3	2.1	8.6	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
AAA_14	PF13173.6	gi|564290776|ref|YP_008877090.1|	-	0.0053	16.8	0.0	7	6.7	0.0	3.2	3	0	0	3	3	3	0	AAA	domain
AAA_29	PF13555.6	gi|564290776|ref|YP_008877090.1|	-	0.0057	16.4	0.2	3.6	7.4	0.0	2.4	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
SRP54	PF00448.22	gi|564290776|ref|YP_008877090.1|	-	0.0068	16.1	0.0	1.6	8.3	0.0	2.4	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
SbcCD_C	PF13558.6	gi|564290776|ref|YP_008877090.1|	-	0.011	15.9	0.0	7.9	6.8	0.0	2.9	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_5	PF07728.14	gi|564290776|ref|YP_008877090.1|	-	0.015	15.3	0.1	5.8	6.9	0.0	3.0	3	0	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
Thymidylate_kin	PF02223.17	gi|564290776|ref|YP_008877090.1|	-	0.022	14.4	0.0	8.1	6.1	0.0	2.5	2	0	0	2	2	2	0	Thymidylate	kinase
Fer4_10	PF13237.6	gi|564290776|ref|YP_008877090.1|	-	0.03	14.4	11.2	0.42	10.8	1.0	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
NTPase_1	PF03266.15	gi|564290776|ref|YP_008877090.1|	-	0.052	13.5	1.1	15	5.4	0.0	3.1	3	0	0	3	3	3	0	NTPase
MMR_HSR1	PF01926.23	gi|564290776|ref|YP_008877090.1|	-	0.063	13.4	0.0	0.76	9.9	0.0	2.5	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Cytidylate_kin	PF02224.18	gi|564290776|ref|YP_008877090.1|	-	0.072	12.8	0.1	3.7	7.2	0.0	2.4	2	0	0	2	2	2	0	Cytidylate	kinase
Fer4_7	PF12838.7	gi|564290776|ref|YP_008877090.1|	-	0.074	13.7	10.3	0.19	12.3	10.4	1.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
CLP1_P	PF16575.5	gi|564290776|ref|YP_008877090.1|	-	0.086	12.6	0.0	4.6	7.0	0.0	2.4	2	0	0	2	2	2	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
DUF87	PF01935.17	gi|564290776|ref|YP_008877090.1|	-	0.096	12.8	0.1	23	5.0	0.0	2.8	3	0	0	3	3	3	0	Helicase	HerA,	central	domain
AAA_25	PF13481.6	gi|564290776|ref|YP_008877090.1|	-	0.11	12.0	2.4	5.5	6.5	0.0	3.3	4	0	0	4	4	3	0	AAA	domain
TsaE	PF02367.17	gi|564290776|ref|YP_008877090.1|	-	0.11	12.4	0.0	28	4.7	0.0	2.8	2	1	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_30	PF13604.6	gi|564290776|ref|YP_008877090.1|	-	0.14	11.9	0.6	7.6	6.2	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
Fer4_9	PF13187.6	gi|564290776|ref|YP_008877090.1|	-	0.18	12.0	8.6	0.37	11.0	8.6	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564290776|ref|YP_008877090.1|	-	0.4	10.9	11.1	0.11	12.7	1.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|564290776|ref|YP_008877090.1|	-	0.69	10.1	7.7	1.3	9.2	7.7	1.5	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564290776|ref|YP_008877090.1|	-	6.1	7.9	11.1	16	6.6	11.1	1.8	1	0	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Peptidase_M54	PF07998.11	gi|564290778|ref|YP_008877092.1|	-	7.3e-21	75.0	0.0	9.2e-21	74.7	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.24	gi|564290778|ref|YP_008877092.1|	-	8.1e-05	22.5	0.0	8.1e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Matrixin
DUF4953	PF16313.5	gi|564290778|ref|YP_008877092.1|	-	0.00022	20.5	0.1	0.00032	20.0	0.1	1.2	1	0	0	1	1	1	1	Met-zincin
Reprolysin_4	PF13583.6	gi|564290778|ref|YP_008877092.1|	-	0.00038	20.2	0.0	0.00044	20.0	0.0	1.1	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_3	PF13582.6	gi|564290778|ref|YP_008877092.1|	-	0.00062	20.3	0.0	0.00084	19.9	0.0	1.3	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_2	PF13574.6	gi|564290778|ref|YP_008877092.1|	-	0.00084	19.3	0.0	0.00084	19.3	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12B	Reprolysin-like
Peptidase_M66	PF10462.9	gi|564290778|ref|YP_008877092.1|	-	0.0012	17.8	0.1	0.0016	17.4	0.1	1.2	1	0	0	1	1	1	1	Peptidase	M66
Reprolysin_5	PF13688.6	gi|564290778|ref|YP_008877092.1|	-	0.0029	17.8	0.0	0.0034	17.5	0.0	1.2	1	0	0	1	1	1	1	Metallo-peptidase	family	M12
Metallopep	PF12044.8	gi|564290778|ref|YP_008877092.1|	-	0.053	12.1	0.1	0.076	11.6	0.1	1.2	1	0	0	1	1	1	0	Putative	peptidase	family
Zincin_1	PF06262.11	gi|564290778|ref|YP_008877092.1|	-	0.062	13.4	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Zincin-like	metallopeptidase
Peptidase_M43	PF05572.13	gi|564290778|ref|YP_008877092.1|	-	0.084	12.8	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Peptidase_M57	PF12388.8	gi|564290778|ref|YP_008877092.1|	-	0.1	12.2	0.0	0.26	10.9	0.0	1.7	2	0	0	2	2	2	0	Dual-action	HEIGH	metallo-peptidase
UPF0146	PF03686.13	gi|564290779|ref|YP_008877093.1|	-	6.5e-31	106.9	0.0	7.9e-31	106.6	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0146)
NTP_transf_3	PF12804.7	gi|564290779|ref|YP_008877093.1|	-	0.0021	18.4	0.4	0.0026	18.1	0.4	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF348	PF03990.14	gi|564290779|ref|YP_008877093.1|	-	0.048	13.4	1.0	0.087	12.6	0.1	1.9	2	0	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
Hydrolase	PF00702.26	gi|564290780|ref|YP_008877094.1|	-	9.9e-13	48.9	2.6	1.5e-11	45.0	2.6	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564290780|ref|YP_008877094.1|	-	1.3e-10	41.6	0.0	4.9e-09	36.5	0.0	2.2	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|564290780|ref|YP_008877094.1|	-	6.1e-06	26.2	2.4	1.7e-05	24.8	0.9	2.4	2	1	0	2	2	2	1	HAD-hyrolase-like
DUF4014	PF13198.6	gi|564290781|ref|YP_008877095.1|	-	0.013	15.8	0.5	0.021	15.2	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4014)
CAAD	PF14159.6	gi|564290781|ref|YP_008877095.1|	-	0.015	15.1	1.7	0.035	13.9	0.2	2.1	2	0	0	2	2	2	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
YfhO	PF09586.10	gi|564290781|ref|YP_008877095.1|	-	0.26	9.5	1.9	0.29	9.3	1.9	1.1	1	0	0	1	1	1	0	Bacterial	membrane	protein	YfhO
Vma12	PF11712.8	gi|564290781|ref|YP_008877095.1|	-	0.26	11.4	1.3	0.39	10.8	1.3	1.4	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
F420_oxidored	PF03807.17	gi|564290782|ref|YP_008877096.1|	-	2.2e-18	66.6	0.2	3.6e-18	65.9	0.2	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_Gly3P_dh_N	PF01210.23	gi|564290782|ref|YP_008877096.1|	-	0.0008	19.4	0.0	0.0012	18.9	0.0	1.2	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.16	gi|564290782|ref|YP_008877096.1|	-	0.0032	17.1	0.1	0.005	16.5	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Sacchrp_dh_NADP	PF03435.18	gi|564290782|ref|YP_008877096.1|	-	0.0035	17.6	0.3	0.011	16.0	0.2	1.9	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
Semialdhyde_dh	PF01118.24	gi|564290782|ref|YP_008877096.1|	-	0.0043	17.5	0.1	0.0064	16.9	0.1	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
KR	PF08659.10	gi|564290782|ref|YP_008877096.1|	-	0.0069	16.3	0.1	0.012	15.5	0.1	1.4	1	0	0	1	1	1	1	KR	domain
DUF2184	PF09950.9	gi|564290782|ref|YP_008877096.1|	-	0.13	11.6	0.3	0.19	11.1	0.3	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2184)
Response_reg	PF00072.24	gi|564290783|ref|YP_008877097.1|	-	2.7e-21	75.8	0.0	3.9e-21	75.3	0.0	1.2	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|564290783|ref|YP_008877097.1|	-	2.8e-06	27.5	0.0	9e-06	25.9	0.0	1.8	2	0	0	2	2	2	1	PAS	fold
PAS_3	PF08447.12	gi|564290783|ref|YP_008877097.1|	-	0.0012	19.0	0.1	0.0047	17.2	0.0	1.9	2	0	0	2	2	2	1	PAS	fold
OKR_DC_1_N	PF03709.15	gi|564290783|ref|YP_008877097.1|	-	0.0023	18.2	0.0	0.0038	17.5	0.0	1.4	1	0	0	1	1	1	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
PAS_9	PF13426.7	gi|564290783|ref|YP_008877097.1|	-	0.038	14.2	0.0	0.1	12.9	0.0	1.7	1	0	0	1	1	1	0	PAS	domain
Thioredoxin	PF00085.20	gi|564290784|ref|YP_008877098.1|	-	8.8e-21	73.8	0.0	1e-20	73.6	0.0	1.0	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564290784|ref|YP_008877098.1|	-	4.5e-08	33.5	0.5	9.3e-07	29.3	0.5	2.0	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.6	gi|564290784|ref|YP_008877098.1|	-	7e-06	26.3	0.2	0.019	15.3	0.0	2.1	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|564290784|ref|YP_008877098.1|	-	2.1e-05	24.3	0.1	2.4e-05	24.1	0.1	1.1	1	0	0	1	1	1	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|564290784|ref|YP_008877098.1|	-	0.00062	19.9	0.1	0.0012	19.1	0.0	1.5	1	1	1	2	2	2	1	Glutaredoxin
AhpC-TSA	PF00578.21	gi|564290784|ref|YP_008877098.1|	-	0.00081	19.3	0.2	0.0048	16.8	0.2	1.8	1	1	0	1	1	1	1	AhpC/TSA	family
DSBA	PF01323.20	gi|564290784|ref|YP_008877098.1|	-	0.001	18.9	0.3	0.18	11.6	0.0	2.0	1	1	1	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin_3	PF13192.6	gi|564290784|ref|YP_008877098.1|	-	0.0015	18.5	0.0	0.0018	18.3	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
TraF	PF13728.6	gi|564290784|ref|YP_008877098.1|	-	0.0027	17.6	0.0	0.0029	17.5	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Redoxin	PF08534.10	gi|564290784|ref|YP_008877098.1|	-	0.0027	17.4	0.4	0.11	12.2	0.1	2.0	1	1	1	2	2	2	1	Redoxin
DUF836	PF05768.14	gi|564290784|ref|YP_008877098.1|	-	0.017	15.5	0.1	0.02	15.3	0.1	1.2	1	0	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_5	PF13743.6	gi|564290784|ref|YP_008877098.1|	-	0.025	14.3	0.2	0.028	14.1	0.2	1.1	1	0	0	1	1	1	0	Thioredoxin
Sec61_beta	PF03911.16	gi|564290785|ref|YP_008877099.1|	-	7.4e-15	54.7	0.0	8.7e-15	54.5	0.0	1.1	1	0	0	1	1	1	1	Sec61beta	family
DUF402	PF04167.13	gi|564290787|ref|YP_008877101.1|	-	6.4e-16	58.3	2.5	1.6e-15	57.0	2.5	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
S1	PF00575.23	gi|564290787|ref|YP_008877101.1|	-	4.8e-05	23.6	0.8	0.00027	21.2	0.1	2.7	2	1	0	2	2	2	1	S1	RNA	binding	domain
S1_2	PF13509.6	gi|564290787|ref|YP_008877101.1|	-	0.12	12.5	0.2	0.51	10.4	0.0	2.0	2	0	0	2	2	2	0	S1	domain
LVIVD	PF08309.11	gi|564290788|ref|YP_008877102.1|	-	3.4e-12	45.5	1.9	2.4e-06	26.8	0.2	5.7	6	1	0	6	6	6	3	LVIVD	repeat
Beta_propel	PF09826.9	gi|564290788|ref|YP_008877102.1|	-	0.0005	19.1	0.0	0.069	12.0	0.0	2.3	2	0	0	2	2	2	2	Beta	propeller	domain
LOR	PF04525.12	gi|564290789|ref|YP_008877103.1|	-	8.6e-08	32.0	1.9	0.00016	21.4	0.4	3.3	1	1	3	4	4	4	3	LURP-one-related
Scramblase	PF03803.15	gi|564290789|ref|YP_008877103.1|	-	0.035	13.4	0.1	11	5.3	0.1	2.3	1	1	0	1	1	1	0	Scramblase
UvrA_inter	PF17760.1	gi|564290790|ref|YP_008877104.1|	-	6.7e-32	109.8	0.1	3.3e-31	107.6	0.0	2.3	2	0	0	2	2	1	1	UvrA	interaction	domain
UvrA_DNA-bind	PF17755.1	gi|564290790|ref|YP_008877104.1|	-	3.1e-29	101.5	0.2	1.4e-26	93.0	0.0	3.4	3	0	0	3	3	3	1	UvrA	DNA-binding	domain
ABC_tran	PF00005.27	gi|564290790|ref|YP_008877104.1|	-	1.4e-21	77.4	0.0	1.3e-10	42.0	0.0	4.3	3	1	0	3	3	3	3	ABC	transporter
SMC_N	PF02463.19	gi|564290790|ref|YP_008877104.1|	-	1e-11	44.7	0.0	0.23	10.8	0.0	4.1	3	1	0	4	4	4	4	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564290790|ref|YP_008877104.1|	-	7.3e-09	35.2	0.0	0.0024	17.6	0.1	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564290790|ref|YP_008877104.1|	-	1.2e-06	29.0	0.8	0.026	14.9	0.0	3.5	4	0	0	4	4	4	2	AAA	ATPase	domain
AAA_15	PF13175.6	gi|564290790|ref|YP_008877104.1|	-	8.2e-06	25.8	0.0	0.032	13.9	0.0	3.8	4	0	0	4	4	4	1	AAA	ATPase	domain
AAA_21	PF13304.6	gi|564290790|ref|YP_008877104.1|	-	1.1e-05	25.4	9.2	0.021	14.7	0.1	4.3	4	0	0	4	4	4	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|564290790|ref|YP_008877104.1|	-	1.9e-05	24.9	0.1	0.22	11.8	0.0	3.2	3	0	0	3	3	3	2	AAA	domain
ATPase	PF06745.13	gi|564290790|ref|YP_008877104.1|	-	8.3e-05	22.0	0.1	0.096	12.0	0.0	3.1	3	0	0	3	3	3	1	KaiC
AAA_25	PF13481.6	gi|564290790|ref|YP_008877104.1|	-	8.4e-05	22.2	0.0	0.78	9.3	0.0	3.1	3	0	0	3	3	3	2	AAA	domain
AAA_23	PF13476.6	gi|564290790|ref|YP_008877104.1|	-	0.00018	22.1	0.0	0.24	11.9	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290790|ref|YP_008877104.1|	-	0.00019	21.4	0.0	0.77	9.6	0.0	2.4	2	0	0	2	2	2	2	RsgA	GTPase
DnaJ_CXXCXGXG	PF00684.19	gi|564290790|ref|YP_008877104.1|	-	0.00043	20.6	11.8	0.068	13.5	1.9	3.8	4	0	0	4	4	3	1	DnaJ	central	domain
Zn-ribbon_8	PF09723.10	gi|564290790|ref|YP_008877104.1|	-	0.0005	20.1	14.9	1.3	9.2	0.5	4.5	4	0	0	4	4	4	2	Zinc	ribbon	domain
AAA_33	PF13671.6	gi|564290790|ref|YP_008877104.1|	-	0.0007	19.8	0.0	2.2	8.4	0.0	3.3	4	0	0	4	4	3	2	AAA	domain
AAA_18	PF13238.6	gi|564290790|ref|YP_008877104.1|	-	0.0021	18.6	0.1	2.9	8.5	0.0	3.1	3	0	0	3	3	2	1	AAA	domain
AAA_14	PF13173.6	gi|564290790|ref|YP_008877104.1|	-	0.0054	16.8	0.0	1.5	8.9	0.0	2.9	3	0	0	3	3	3	1	AAA	domain
APS_kinase	PF01583.20	gi|564290790|ref|YP_008877104.1|	-	0.0058	16.5	0.1	5.3	6.9	0.0	2.7	2	0	0	2	2	2	1	Adenylylsulphate	kinase
cobW	PF02492.19	gi|564290790|ref|YP_008877104.1|	-	0.011	15.3	0.2	1.3	8.6	0.1	2.4	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF2075	PF09848.9	gi|564290790|ref|YP_008877104.1|	-	0.018	14.3	0.0	3.3	6.9	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
NACHT	PF05729.12	gi|564290790|ref|YP_008877104.1|	-	0.018	15.0	0.0	1.6	8.6	0.0	2.5	2	0	0	2	2	2	0	NACHT	domain
Viral_helicase1	PF01443.18	gi|564290790|ref|YP_008877104.1|	-	0.031	14.0	0.0	1	9.0	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_30	PF13604.6	gi|564290790|ref|YP_008877104.1|	-	0.071	12.8	0.1	5.4	6.7	0.1	2.7	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|564290790|ref|YP_008877104.1|	-	0.079	12.7	0.1	9.1	6.0	0.0	3.3	4	0	0	4	4	3	0	AAA	domain
ATPase_2	PF01637.18	gi|564290790|ref|YP_008877104.1|	-	0.1	12.5	0.0	20	5.0	0.0	2.4	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
NB-ARC	PF00931.22	gi|564290790|ref|YP_008877104.1|	-	0.13	11.4	0.0	1.5	8.0	0.0	2.4	2	0	0	2	2	2	0	NB-ARC	domain
RNA_helicase	PF00910.22	gi|564290790|ref|YP_008877104.1|	-	0.2	12.0	0.0	6.3	7.2	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
Zn_Tnp_IS91	PF14319.6	gi|564290790|ref|YP_008877104.1|	-	0.26	11.4	5.3	1.5	8.9	0.0	3.2	4	0	0	4	4	3	0	Transposase	zinc-binding	domain
DZR	PF12773.7	gi|564290790|ref|YP_008877104.1|	-	0.42	10.7	9.7	5.2	7.2	0.3	4.1	4	0	0	4	4	4	0	Double	zinc	ribbon
SLATT_2	PF18183.1	gi|564290791|ref|YP_008877105.1|	-	0.042	13.6	0.4	0.042	13.6	0.4	1.8	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	2
Peptidase_S9	PF00326.21	gi|564290792|ref|YP_008877106.1|	-	3.7e-44	150.7	0.1	5.4e-44	150.2	0.1	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.18	gi|564290792|ref|YP_008877106.1|	-	1.3e-05	25.0	0.3	0.16	11.5	0.0	2.3	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
Peptidase_S9_N	PF02897.15	gi|564290792|ref|YP_008877106.1|	-	6.9e-05	21.8	0.2	0.00017	20.6	0.2	1.7	1	1	0	1	1	1	1	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
Hydrolase_4	PF12146.8	gi|564290792|ref|YP_008877106.1|	-	0.00013	21.4	0.2	0.03	13.6	0.1	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Pectate_lyase22	PF14583.6	gi|564290792|ref|YP_008877106.1|	-	0.00015	20.6	0.4	0.009	14.7	0.2	2.4	2	0	0	2	2	2	1	Oligogalacturonate	lyase
Peptidase_S28	PF05577.12	gi|564290792|ref|YP_008877106.1|	-	0.00027	19.9	0.0	0.00042	19.2	0.0	1.2	1	0	0	1	1	1	1	Serine	carboxypeptidase	S28
PD40	PF07676.12	gi|564290792|ref|YP_008877106.1|	-	0.00047	20.0	0.0	0.19	11.7	0.0	4.1	4	0	0	4	4	4	1	WD40-like	Beta	Propeller	Repeat
Kelch_4	PF13418.6	gi|564290792|ref|YP_008877106.1|	-	0.00094	19.1	0.1	0.3	11.1	0.0	3.3	3	0	0	3	3	3	1	Galactose	oxidase,	central	domain
DLH	PF01738.18	gi|564290792|ref|YP_008877106.1|	-	0.0013	18.3	0.0	0.0031	17.1	0.0	1.5	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
DPPIV_N	PF00930.21	gi|564290792|ref|YP_008877106.1|	-	0.0097	14.7	0.0	8.7	5.0	0.0	3.3	3	1	1	4	4	4	2	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
AXE1	PF05448.12	gi|564290792|ref|YP_008877106.1|	-	0.016	13.9	0.0	0.084	11.5	0.0	1.9	2	0	0	2	2	2	0	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_1	PF00561.20	gi|564290792|ref|YP_008877106.1|	-	0.026	14.2	0.7	0.11	12.2	0.8	1.8	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
mRNA_cap_enzyme	PF01331.19	gi|564290792|ref|YP_008877106.1|	-	0.061	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	mRNA	capping	enzyme,	catalytic	domain
Sortilin-Vps10	PF15902.5	gi|564290793|ref|YP_008877107.1|	-	1e-11	44.3	0.0	8.2e-05	21.6	0.0	2.1	2	0	0	2	2	2	2	Sortilin,	neurotensin	receptor	3,
PSII_BNR	PF14870.6	gi|564290793|ref|YP_008877107.1|	-	2.6e-06	26.9	0.4	0.00084	18.7	0.2	2.9	2	1	2	4	4	4	2	Photosynthesis	system	II	assembly	factor	YCF48
BNR	PF02012.20	gi|564290793|ref|YP_008877107.1|	-	9.6e-06	24.9	19.8	0.24	11.6	0.6	5.7	5	0	0	5	5	5	3	BNR/Asp-box	repeat
DUF4185	PF13810.6	gi|564290793|ref|YP_008877107.1|	-	0.14	11.3	5.9	0.3	10.3	0.2	3.1	1	1	3	4	4	4	0	Domain	of	unknown	function	(DUF4185)
BNR_3	PF13859.6	gi|564290793|ref|YP_008877107.1|	-	3.1	7.0	4.2	0.85	8.9	0.3	2.0	3	0	0	3	3	3	0	BNR	repeat-like	domain
FAD_binding_3	PF01494.19	gi|564290795|ref|YP_008877109.1|	-	2.1e-17	63.4	2.5	1.5e-10	40.9	0.0	3.1	3	0	0	3	3	3	3	FAD	binding	domain
Lycopene_cycl	PF05834.12	gi|564290795|ref|YP_008877109.1|	-	7.3e-10	38.4	0.3	1.1e-06	28.0	0.3	2.1	1	1	0	1	1	1	1	Lycopene	cyclase	protein
DAO	PF01266.24	gi|564290795|ref|YP_008877109.1|	-	5.8e-09	36.0	2.2	6.7e-05	22.6	0.1	2.8	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|564290795|ref|YP_008877109.1|	-	1.6e-06	27.1	0.0	5.1e-06	25.4	0.0	1.7	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.14	gi|564290795|ref|YP_008877109.1|	-	2.7e-06	26.8	0.1	5.3e-06	25.9	0.1	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.7	gi|564290795|ref|YP_008877109.1|	-	2.9e-06	26.9	1.1	4.3e-06	26.3	1.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|564290795|ref|YP_008877109.1|	-	1.4e-05	24.4	1.7	2e-05	23.9	0.7	1.7	1	1	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564290795|ref|YP_008877109.1|	-	0.00035	20.7	1.2	0.00056	20.1	0.1	2.0	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.6	gi|564290795|ref|YP_008877109.1|	-	0.00063	19.1	0.1	0.0028	17.0	0.1	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.22	gi|564290795|ref|YP_008877109.1|	-	0.0017	17.5	0.1	0.0024	17.0	0.1	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|564290795|ref|YP_008877109.1|	-	0.0031	16.8	0.1	0.0049	16.1	0.1	1.3	1	0	0	1	1	1	1	Thi4	family
Trp_halogenase	PF04820.14	gi|564290795|ref|YP_008877109.1|	-	0.0063	15.4	0.6	1.5	7.5	0.2	2.5	3	0	0	3	3	3	2	Tryptophan	halogenase
Pyr_redox	PF00070.27	gi|564290795|ref|YP_008877109.1|	-	0.038	14.6	0.4	0.81	10.3	0.1	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.18	gi|564290795|ref|YP_008877109.1|	-	0.055	13.4	0.0	0.084	12.8	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.6	gi|564290795|ref|YP_008877109.1|	-	0.073	13.5	0.1	0.14	12.6	0.1	1.5	1	1	0	1	1	1	0	Putative	NAD(P)-binding
AI-2E_transport	PF01594.16	gi|564290796|ref|YP_008877110.1|	-	1.8e-35	122.7	35.8	5.1e-31	108.0	21.1	2.0	2	0	0	2	2	2	2	AI-2E	family	transporter
Rhodanese	PF00581.20	gi|564290797|ref|YP_008877111.1|	-	7.9e-33	113.2	0.0	5.8e-17	62.2	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Rhodanese	PF00581.20	gi|564290798|ref|YP_008877112.1|	-	2.4e-35	121.3	0.3	7.2e-18	65.1	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
zf-CSL	PF05207.13	gi|564291384|ref|YP_008877114.1|	-	0.00025	20.7	0.1	0.00025	20.7	0.1	1.0	1	0	0	1	1	1	1	CSL	zinc	finger
DUF1059	PF06348.11	gi|564291384|ref|YP_008877114.1|	-	0.043	14.1	0.1	0.052	13.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1059)
Beta-Casp	PF10996.8	gi|564290800|ref|YP_008877115.1|	-	6.4e-13	49.0	0.0	1.2e-12	48.1	0.0	1.4	1	0	0	1	1	1	1	Beta-Casp	domain
RMMBL	PF07521.12	gi|564290800|ref|YP_008877115.1|	-	1.2e-12	47.6	0.0	3.6e-12	46.0	0.0	1.8	2	0	0	2	2	2	1	Zn-dependent	metallo-hydrolase	RNA	specificity	domain
Lactamase_B_2	PF12706.7	gi|564290800|ref|YP_008877115.1|	-	1.4e-07	31.3	1.2	3e-07	30.2	0.8	1.7	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|564290800|ref|YP_008877115.1|	-	8.7e-07	29.1	7.4	8.7e-07	29.1	7.4	2.2	2	1	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Lactamase_B_6	PF16661.5	gi|564290800|ref|YP_008877115.1|	-	3.5e-05	23.3	0.0	7.1e-05	22.3	0.0	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|564290800|ref|YP_008877115.1|	-	0.011	15.7	0.0	0.028	14.3	0.0	1.7	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
Rhodanese	PF00581.20	gi|564290800|ref|YP_008877115.1|	-	0.12	12.9	0.0	0.38	11.3	0.0	1.8	2	0	0	2	2	2	0	Rhodanese-like	domain
RHH_1	PF01402.21	gi|564290801|ref|YP_008877116.1|	-	5.8e-05	22.9	1.5	7.8e-05	22.5	1.5	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RsdA_SigD_bd	PF16751.5	gi|564290801|ref|YP_008877116.1|	-	7.9	6.8	12.3	0.25	11.6	6.3	1.6	2	1	0	2	2	2	0	Anti-sigma-D	factor	RsdA	to	sigma	factor	binding	region
DUF2238	PF09997.9	gi|564290802|ref|YP_008877117.1|	-	0.0021	17.8	2.7	0.0021	17.8	2.7	2.8	2	1	0	2	2	2	1	Predicted	membrane	protein	(DUF2238)
Cupin_2	PF07883.11	gi|564290803|ref|YP_008877118.1|	-	3.1e-18	65.2	0.9	3.9e-18	64.9	0.9	1.1	1	0	0	1	1	1	1	Cupin	domain
MannoseP_isomer	PF01050.18	gi|564290803|ref|YP_008877118.1|	-	3.2e-08	33.6	0.0	3.6e-08	33.4	0.0	1.0	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
AraC_binding	PF02311.19	gi|564290803|ref|YP_008877118.1|	-	9.4e-06	25.6	0.1	1.2e-05	25.3	0.1	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.12	gi|564290803|ref|YP_008877118.1|	-	0.017	14.8	0.0	0.026	14.2	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF861)
Cupin_6	PF12852.7	gi|564290803|ref|YP_008877118.1|	-	0.096	12.4	0.0	0.097	12.4	0.0	1.1	1	0	0	1	1	1	0	Cupin
HTH_16	PF12645.7	gi|564291385|ref|YP_008877119.1|	-	0.17	12.0	0.0	1.1	9.3	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF21	PF01595.20	gi|564290804|ref|YP_008877120.1|	-	1.1e-26	93.6	0.0	1.6e-26	93.1	0.0	1.1	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|564290804|ref|YP_008877120.1|	-	6.5e-11	42.5	1.2	8.2e-09	35.8	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
adh_short	PF00106.25	gi|564290805|ref|YP_008877121.1|	-	3.4e-29	101.7	0.0	2.3e-28	99.0	0.0	2.0	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564290805|ref|YP_008877121.1|	-	8.3e-17	61.5	0.4	1.2e-16	61.0	0.2	1.5	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564290805|ref|YP_008877121.1|	-	2.5e-06	27.5	0.1	3.7e-06	27.0	0.1	1.3	1	0	0	1	1	1	1	KR	domain
DUF836	PF05768.14	gi|564290806|ref|YP_008877122.1|	-	3e-15	56.4	0.0	3.5e-15	56.2	0.0	1.0	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Glutaredoxin	PF00462.24	gi|564290806|ref|YP_008877122.1|	-	4.8e-08	33.1	0.2	1.2e-07	31.8	0.1	1.7	1	1	1	2	2	2	1	Glutaredoxin
Thioredoxin_3	PF13192.6	gi|564290806|ref|YP_008877122.1|	-	7.1e-06	26.0	0.0	8.7e-06	25.7	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin	domain
TraF	PF13728.6	gi|564290806|ref|YP_008877122.1|	-	0.022	14.6	0.0	0.13	12.1	0.0	1.7	1	1	1	2	2	2	0	F	plasmid	transfer	operon	protein
KaiB	PF07689.12	gi|564290806|ref|YP_008877122.1|	-	0.067	12.9	0.0	0.096	12.4	0.0	1.2	1	0	0	1	1	1	0	KaiB	domain
Bac_rhodopsin	PF01036.18	gi|564290807|ref|YP_008877123.1|	-	0.0055	16.3	1.0	0.0064	16.1	1.0	1.0	1	0	0	1	1	1	1	Bacteriorhodopsin-like	protein
TMP-TENI	PF02581.17	gi|564290808|ref|YP_008877124.1|	-	1.4e-60	203.7	4.0	1.7e-60	203.4	4.0	1.1	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase
ThiG	PF05690.14	gi|564290808|ref|YP_008877124.1|	-	1.5e-07	31.0	4.9	2.2e-07	30.5	4.9	1.4	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.15	gi|564290808|ref|YP_008877124.1|	-	5.7e-07	29.2	8.7	8.5e-07	28.7	8.7	1.2	1	1	0	1	1	1	1	Nitronate	monooxygenase
DHO_dh	PF01180.21	gi|564290808|ref|YP_008877124.1|	-	0.004	16.4	1.2	0.004	16.4	1.2	1.8	2	0	0	2	2	2	1	Dihydroorotate	dehydrogenase
DUF348	PF03990.14	gi|564290808|ref|YP_008877124.1|	-	1.1	9.1	5.9	12	5.7	0.3	2.9	2	1	0	2	2	2	0	G5-linked-Ubiquitin-like	domain
PhoU	PF01895.19	gi|564290809|ref|YP_008877125.1|	-	4.6e-13	49.4	2.6	1e-10	42.0	0.2	2.6	2	0	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|564290809|ref|YP_008877125.1|	-	9.5e-07	28.6	0.0	1.9e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
IMPDH	PF00478.25	gi|564290809|ref|YP_008877125.1|	-	0.012	14.7	2.1	0.041	12.9	0.1	2.0	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
DUF892	PF05974.12	gi|564290809|ref|YP_008877125.1|	-	0.035	14.1	0.8	0.12	12.4	0.1	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF892)
Filo_VP35	PF02097.15	gi|564290809|ref|YP_008877125.1|	-	0.044	12.9	0.0	0.061	12.4	0.0	1.2	1	0	0	1	1	1	0	Filoviridae	VP35
PSK_trans_fac	PF07704.11	gi|564290809|ref|YP_008877125.1|	-	5.1	7.9	10.2	0.27	12.0	0.9	3.1	3	1	0	3	3	3	0	Rv0623-like	transcription	factor
PhoU	PF01895.19	gi|564290810|ref|YP_008877126.1|	-	1e-36	125.3	13.5	1.9e-20	73.1	1.7	2.1	2	0	0	2	2	2	2	PhoU	domain
DUF148	PF02520.17	gi|564290810|ref|YP_008877126.1|	-	0.027	14.6	0.0	0.052	13.7	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF148
Rep_fac_C	PF08542.11	gi|564290810|ref|YP_008877126.1|	-	0.052	14.0	0.3	1.7	9.1	0.0	2.9	2	2	1	3	3	3	0	Replication	factor	C	C-terminal	domain
DUF1484	PF07363.11	gi|564290810|ref|YP_008877126.1|	-	1.3	10.0	5.1	11	7.1	0.1	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1484)
ABC_tran	PF00005.27	gi|564290811|ref|YP_008877127.1|	-	2.3e-31	109.1	0.0	4.3e-31	108.3	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290811|ref|YP_008877127.1|	-	2.8e-10	40.5	0.0	2.6e-05	24.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564290811|ref|YP_008877127.1|	-	3.3e-08	33.2	0.3	5.6e-06	25.9	0.3	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564290811|ref|YP_008877127.1|	-	9.7e-06	25.5	0.0	6.9e-05	22.7	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.6	gi|564290811|ref|YP_008877127.1|	-	0.00035	21.0	0.1	0.00097	19.6	0.1	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564290811|ref|YP_008877127.1|	-	0.00043	20.6	0.0	0.0014	18.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290811|ref|YP_008877127.1|	-	0.0012	18.8	0.0	0.0028	17.6	0.0	1.6	2	0	0	2	2	2	1	RsgA	GTPase
AAA_29	PF13555.6	gi|564290811|ref|YP_008877127.1|	-	0.0014	18.3	0.0	0.0033	17.1	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564290811|ref|YP_008877127.1|	-	0.0077	16.8	0.0	0.027	15.0	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
Rad17	PF03215.15	gi|564290811|ref|YP_008877127.1|	-	0.0079	16.1	0.0	0.014	15.4	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_25	PF13481.6	gi|564290811|ref|YP_008877127.1|	-	0.013	15.0	0.0	0.078	12.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DeoRC	PF00455.22	gi|564290811|ref|YP_008877127.1|	-	0.016	15.2	0.0	0.027	14.4	0.0	1.3	1	0	0	1	1	1	0	DeoR	C	terminal	sensor	domain
AAA_30	PF13604.6	gi|564290811|ref|YP_008877127.1|	-	0.027	14.2	0.1	0.95	9.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_33	PF13671.6	gi|564290811|ref|YP_008877127.1|	-	0.046	13.9	0.0	0.085	13.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
NYN_YacP	PF05991.11	gi|564290811|ref|YP_008877127.1|	-	0.098	12.6	0.1	0.17	11.8	0.1	1.4	1	0	0	1	1	1	0	YacP-like	NYN	domain
PRK	PF00485.18	gi|564290811|ref|YP_008877127.1|	-	0.14	11.9	0.0	0.29	10.9	0.0	1.5	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
BPD_transp_1	PF00528.22	gi|564290812|ref|YP_008877128.1|	-	1.7e-16	60.5	18.7	1.7e-16	60.5	18.7	7.6	2	2	2	6	6	6	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2371	PF10177.9	gi|564290812|ref|YP_008877128.1|	-	0.17	12.0	2.2	0.66	10.2	0.2	2.9	2	0	0	2	2	2	0	Uncharacterised	conserved	protein	(DUF2371)
BPD_transp_1	PF00528.22	gi|564290813|ref|YP_008877129.1|	-	2.4e-19	69.8	10.7	2.4e-19	69.8	10.7	3.0	2	1	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
Cyt_bd_oxida_II	PF02322.15	gi|564290813|ref|YP_008877129.1|	-	1.4	8.2	35.9	0.013	14.9	17.7	2.7	1	1	0	2	2	2	0	Cytochrome	bd	terminal	oxidase	subunit	II
PBP_like_2	PF12849.7	gi|564290814|ref|YP_008877130.1|	-	2.3e-18	66.8	0.6	2.3e-18	66.8	0.6	2.3	1	1	0	2	2	2	1	PBP	superfamily	domain
PBP_like	PF12727.7	gi|564290814|ref|YP_008877130.1|	-	1.2e-11	44.1	0.1	1.2e-11	44.1	0.1	1.5	2	0	0	2	2	2	1	PBP	superfamily	domain
TAT_signal	PF10518.9	gi|564290814|ref|YP_008877130.1|	-	0.21	11.5	1.2	0.48	10.4	1.2	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
PhoU	PF01895.19	gi|564290815|ref|YP_008877131.1|	-	1.2e-21	77.0	3.8	7e-18	64.9	0.5	2.6	2	1	0	2	2	2	2	PhoU	domain
MazE_antitoxin	PF04014.18	gi|564290815|ref|YP_008877131.1|	-	3.5e-09	36.4	0.0	6.9e-09	35.4	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
DUF948	PF06103.11	gi|564290815|ref|YP_008877131.1|	-	0.011	16.0	2.9	5.5	7.3	0.3	3.4	2	2	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Bep_C_terminal	PF17841.1	gi|564290815|ref|YP_008877131.1|	-	0.018	15.2	0.0	0.042	14.1	0.0	1.7	1	0	0	1	1	1	0	BID	domain	of	Bartonella	effector	protein	(Bep)
FAM184	PF15665.5	gi|564290815|ref|YP_008877131.1|	-	0.044	13.6	0.4	0.087	12.6	0.4	1.4	1	0	0	1	1	1	0	Family	with	sequence	similarity	184,	A	and	B
ABC_tran_CTD	PF16326.5	gi|564290816|ref|YP_008877132.1|	-	0.13	12.6	1.7	2.5	8.4	0.3	2.7	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
Rhodanese	PF00581.20	gi|564290817|ref|YP_008877133.1|	-	7.7e-13	48.9	0.0	9.9e-13	48.5	0.0	1.1	1	0	0	1	1	1	1	Rhodanese-like	domain
NUDIX	PF00293.28	gi|564290818|ref|YP_008877134.1|	-	8.8e-13	48.4	0.3	1.3e-12	47.9	0.3	1.2	1	0	0	1	1	1	1	NUDIX	domain
Thioredoxin_5	PF13743.6	gi|564290820|ref|YP_008877136.1|	-	0.19	11.4	0.8	0.24	11.1	0.1	1.4	2	0	0	2	2	2	0	Thioredoxin
zf-C2H2_9	PF16293.5	gi|564290821|ref|YP_008877137.1|	-	0.00061	19.6	0.0	0.0011	18.7	0.0	1.3	1	0	0	1	1	1	1	C2H2	type	zinc-finger	(1	copy)
Acetyltransf_1	PF00583.25	gi|564290822|ref|YP_008877138.1|	-	5.7e-19	68.5	0.0	7.4e-19	68.1	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.7	gi|564290822|ref|YP_008877138.1|	-	1.4e-11	44.7	0.0	1.9e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564290822|ref|YP_008877138.1|	-	8.6e-11	41.9	0.0	1.1e-10	41.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564290822|ref|YP_008877138.1|	-	2.4e-08	34.1	0.0	3.8e-08	33.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564290822|ref|YP_008877138.1|	-	8.5e-07	28.9	0.0	1.4e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.7	gi|564290822|ref|YP_008877138.1|	-	2.6e-05	24.9	0.0	3.1e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.6	gi|564290822|ref|YP_008877138.1|	-	5.1e-05	23.0	0.0	0.0001	22.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564290822|ref|YP_008877138.1|	-	0.0017	18.5	0.0	0.0026	17.8	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
PanZ	PF12568.8	gi|564290822|ref|YP_008877138.1|	-	0.048	13.4	0.0	0.086	12.6	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain,	PanZ
Acetyltransf_13	PF13880.6	gi|564290822|ref|YP_008877138.1|	-	0.055	13.4	0.0	0.13	12.3	0.0	1.6	1	0	0	1	1	1	0	ESCO1/2	acetyl-transferase
GNAT_acetyltran	PF12746.7	gi|564290822|ref|YP_008877138.1|	-	0.13	11.8	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	GNAT	acetyltransferase
Aconitase	PF00330.20	gi|564290823|ref|YP_008877139.1|	-	5.7e-106	355.3	0.4	4.2e-104	349.1	0.4	2.3	1	1	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.19	gi|564290823|ref|YP_008877139.1|	-	1.6e-20	73.7	0.0	3.1e-20	72.8	0.0	1.4	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
DUF521	PF04412.13	gi|564290823|ref|YP_008877139.1|	-	0.012	14.3	0.0	0.019	13.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
Barwin	PF00967.17	gi|564290823|ref|YP_008877139.1|	-	0.081	12.8	0.0	0.17	11.7	0.0	1.5	1	0	0	1	1	1	0	Barwin	family
dUTPase	PF00692.19	gi|564291386|ref|YP_008877140.1|	-	5.2e-10	39.1	0.0	6.7e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	dUTPase
HTH_10	PF04967.12	gi|564290824|ref|YP_008877141.1|	-	5.4e-15	54.9	0.0	8.9e-15	54.2	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564290824|ref|YP_008877141.1|	-	0.00022	21.1	0.3	0.00038	20.3	0.3	1.4	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
MarR_2	PF12802.7	gi|564290824|ref|YP_008877141.1|	-	0.0011	18.8	0.1	0.0066	16.3	0.1	2.1	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|564290824|ref|YP_008877141.1|	-	0.011	15.3	0.1	0.021	14.4	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564290824|ref|YP_008877141.1|	-	0.012	15.5	1.3	0.016	15.0	0.2	1.8	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Sigma70_r4	PF04545.16	gi|564290824|ref|YP_008877141.1|	-	0.019	14.5	0.1	0.04	13.4	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HalOD1	PF18545.1	gi|564290825|ref|YP_008877142.1|	-	2e-10	40.8	4.4	2.4e-10	40.5	4.4	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
MGS	PF02142.22	gi|564290826|ref|YP_008877143.1|	-	3.7e-15	55.9	0.0	4.4e-15	55.6	0.0	1.1	1	0	0	1	1	1	1	MGS-like	domain
QueC	PF06508.13	gi|564290827|ref|YP_008877144.1|	-	1.5e-68	230.4	0.0	1.7e-68	230.2	0.0	1.0	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.14	gi|564290827|ref|YP_008877144.1|	-	0.0015	18.1	0.0	0.0033	17.0	0.0	1.6	2	1	0	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.16	gi|564290827|ref|YP_008877144.1|	-	0.0038	16.1	0.0	0.005	15.7	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyl	transferase
NAD_synthase	PF02540.17	gi|564290827|ref|YP_008877144.1|	-	0.17	10.9	0.0	0.28	10.3	0.0	1.5	1	1	0	1	1	1	0	NAD	synthase
Radical_SAM	PF04055.21	gi|564290828|ref|YP_008877145.1|	-	5.3e-24	85.5	3.9	8.5e-24	84.8	3.9	1.3	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.6	gi|564290828|ref|YP_008877145.1|	-	1.7e-13	50.7	0.0	3.6e-13	49.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.6	gi|564290828|ref|YP_008877145.1|	-	7.7e-09	35.9	0.0	1.5e-08	35.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TP_methylase	PF00590.20	gi|564290828|ref|YP_008877145.1|	-	0.0073	16.3	0.5	0.025	14.5	0.5	1.8	1	1	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
PTPS	PF01242.19	gi|564290829|ref|YP_008877146.1|	-	6e-23	81.1	0.0	7.5e-23	80.8	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
baeRF_family10	PF18854.1	gi|564290829|ref|YP_008877146.1|	-	0.017	15.4	0.4	0.06	13.6	0.1	1.8	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
Halo_GVPC	PF05465.13	gi|564290831|ref|YP_008877148.1|	-	4	7.8	10.3	1.1	9.6	2.6	3.3	2	1	1	3	3	3	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
Peptidase_M28	PF04389.17	gi|564290832|ref|YP_008877149.1|	-	6e-35	120.7	0.3	8.6e-35	120.2	0.3	1.2	1	0	0	1	1	1	1	Peptidase	family	M28
PA	PF02225.22	gi|564290832|ref|YP_008877149.1|	-	2e-14	53.4	0.0	5.1e-14	52.1	0.0	1.7	1	0	0	1	1	1	1	PA	domain
Peptidase_M42	PF05343.14	gi|564290832|ref|YP_008877149.1|	-	7.7e-06	25.1	0.7	1.3e-05	24.4	0.3	1.5	2	0	0	2	2	2	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.28	gi|564290832|ref|YP_008877149.1|	-	1.9e-05	24.5	1.0	4.7e-05	23.2	1.0	1.8	1	1	0	1	1	1	1	Peptidase	family	M20/M25/M40
Nicastrin	PF05450.15	gi|564290832|ref|YP_008877149.1|	-	0.043	13.3	0.0	0.075	12.5	0.0	1.3	1	0	0	1	1	1	0	Nicastrin
Tmemb_9	PF05434.11	gi|564291387|ref|YP_008877151.1|	-	0.69	9.8	1.2	0.98	9.3	1.2	1.1	1	0	0	1	1	1	0	TMEM9
DUF3687	PF12459.8	gi|564291387|ref|YP_008877151.1|	-	0.71	9.4	2.1	0.72	9.4	0.7	1.7	2	0	0	2	2	2	0	D-Ala-teichoic	acid	biosynthesis	protein
Fer2	PF00111.27	gi|564290834|ref|YP_008877152.1|	-	7e-19	67.6	0.2	9e-19	67.2	0.2	1.1	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|564290834|ref|YP_008877152.1|	-	0.0082	16.2	0.1	0.018	15.1	0.1	1.6	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
SBP56	PF05694.11	gi|564290835|ref|YP_008877153.1|	-	5e-199	661.8	0.5	5.7e-199	661.6	0.5	1.0	1	0	0	1	1	1	1	56kDa	selenium	binding	protein	(SBP56)
Lactonase	PF10282.9	gi|564290835|ref|YP_008877153.1|	-	0.0016	17.8	0.0	0.017	14.4	0.0	2.3	2	1	0	2	2	2	1	Lactonase,	7-bladed	beta-propeller
Epimerase	PF01370.21	gi|564290836|ref|YP_008877154.1|	-	2.3e-21	76.3	0.1	4.2e-21	75.5	0.1	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|564290836|ref|YP_008877154.1|	-	2.9e-17	63.1	0.5	6.9e-13	48.7	0.1	2.3	2	1	0	2	2	2	2	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|564290836|ref|YP_008877154.1|	-	7.3e-08	31.7	0.0	1e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|564290836|ref|YP_008877154.1|	-	1.5e-06	27.5	0.0	2.2e-06	27.0	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.6	gi|564290836|ref|YP_008877154.1|	-	4.3e-06	26.8	0.1	1.2e-05	25.3	0.0	1.9	2	1	0	2	2	2	1	NAD(P)H-binding
Polysacc_synt_2	PF02719.15	gi|564290836|ref|YP_008877154.1|	-	0.0093	15.1	0.0	0.15	11.2	0.0	2.3	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
LpxI_N	PF17930.1	gi|564290836|ref|YP_008877154.1|	-	0.011	15.7	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	LpxI	N-terminal	domain
KR	PF08659.10	gi|564290836|ref|YP_008877154.1|	-	0.023	14.6	0.3	0.1	12.5	0.1	1.9	2	0	0	2	2	2	0	KR	domain
NmrA	PF05368.13	gi|564290836|ref|YP_008877154.1|	-	0.031	13.8	0.1	0.046	13.3	0.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
NAD_binding_10	PF13460.6	gi|564290837|ref|YP_008877155.1|	-	2.9e-17	63.2	0.0	4.8e-17	62.5	0.0	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|564290837|ref|YP_008877155.1|	-	6.5e-12	45.4	0.0	1.9e-11	43.9	0.0	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.13	gi|564290837|ref|YP_008877155.1|	-	1.6e-11	44.2	0.0	2.2e-11	43.8	0.0	1.1	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|564290837|ref|YP_008877155.1|	-	1e-05	24.7	0.0	1.6e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RmlD_sub_bind	PF04321.17	gi|564290837|ref|YP_008877155.1|	-	1.6e-05	24.2	0.0	0.00013	21.1	0.0	2.0	2	0	0	2	2	2	1	RmlD	substrate	binding	domain
GDP_Man_Dehyd	PF16363.5	gi|564290837|ref|YP_008877155.1|	-	0.00092	18.7	0.0	0.0014	18.1	0.0	1.2	1	0	0	1	1	1	1	GDP-mannose	4,6	dehydratase
adh_short	PF00106.25	gi|564290837|ref|YP_008877155.1|	-	0.0058	16.1	0.0	0.0088	15.5	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|564290837|ref|YP_008877155.1|	-	0.011	16.2	0.0	0.035	14.6	0.0	1.8	2	0	0	2	2	2	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Glyco_trans_4_4	PF13579.6	gi|564290837|ref|YP_008877155.1|	-	0.016	15.6	0.4	1.1	9.7	0.0	2.6	3	0	0	3	3	3	0	Glycosyl	transferase	4-like	domain
KR	PF08659.10	gi|564290837|ref|YP_008877155.1|	-	0.017	15.1	0.0	0.029	14.3	0.0	1.3	1	0	0	1	1	1	0	KR	domain
DapB_N	PF01113.20	gi|564290837|ref|YP_008877155.1|	-	0.028	14.6	0.0	0.049	13.8	0.0	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
PAC2	PF09754.9	gi|564290837|ref|YP_008877155.1|	-	0.045	13.8	0.0	0.088	12.8	0.0	1.5	1	1	0	1	1	1	0	PAC2	family
NAD_binding_4	PF07993.12	gi|564290837|ref|YP_008877155.1|	-	0.08	12.1	0.0	0.18	10.9	0.0	1.7	2	0	0	2	2	2	0	Male	sterility	protein
ApbA	PF02558.16	gi|564290837|ref|YP_008877155.1|	-	0.14	11.8	0.0	0.23	11.1	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Fer2	PF00111.27	gi|564290838|ref|YP_008877156.1|	-	4e-12	45.9	0.3	9.2e-12	44.7	0.3	1.6	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Pilin_N	PF07790.11	gi|564291388|ref|YP_008877157.1|	-	3e-12	47.3	2.4	5.5e-12	46.4	2.4	1.4	1	0	0	1	1	1	1	Archaeal	Type	IV	pilin,	N-terminal
Myco_19_kDa	PF05481.12	gi|564291388|ref|YP_008877157.1|	-	0.032	14.5	1.0	0.051	13.8	1.0	1.3	1	1	0	1	1	1	0	Mycobacterium	19	kDa	lipoprotein	antigen
Rep_1B	PF17873.1	gi|564291388|ref|YP_008877157.1|	-	1.1	9.2	0.0	1.1	9.2	0.0	3.3	4	0	0	4	4	4	0	Replicase	polyprotein	1ab
NAD_binding_2	PF03446.15	gi|564290839|ref|YP_008877158.1|	-	1.9e-38	132.1	0.0	2.6e-38	131.7	0.0	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
6PGD	PF00393.19	gi|564290839|ref|YP_008877158.1|	-	1.5e-24	86.9	0.0	2e-24	86.5	0.0	1.1	1	0	0	1	1	1	1	6-phosphogluconate	dehydrogenase,	C-terminal	domain
F420_oxidored	PF03807.17	gi|564290839|ref|YP_008877158.1|	-	2.3e-06	28.1	0.1	3.6e-06	27.5	0.1	1.3	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|564290839|ref|YP_008877158.1|	-	8.9e-06	26.0	0.1	1.7e-05	25.0	0.1	1.5	1	0	0	1	1	1	1	TrkA-N	domain
3HCDH_N	PF02737.18	gi|564290839|ref|YP_008877158.1|	-	2.4e-05	24.3	0.0	3.4e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564290839|ref|YP_008877158.1|	-	0.00037	19.9	0.0	0.00053	19.4	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564290839|ref|YP_008877158.1|	-	0.0017	18.0	0.0	0.0042	16.7	0.1	1.6	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_11	PF14833.6	gi|564290839|ref|YP_008877158.1|	-	0.0077	16.5	0.0	0.047	13.9	0.0	2.1	1	1	1	2	2	2	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
Sacchrp_dh_NADP	PF03435.18	gi|564290839|ref|YP_008877158.1|	-	0.011	16.0	0.7	0.14	12.5	0.7	2.1	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
Gp_dh_N	PF00044.24	gi|564290839|ref|YP_008877158.1|	-	0.023	15.0	0.0	0.042	14.2	0.0	1.4	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|564290839|ref|YP_008877158.1|	-	0.027	14.6	0.8	0.052	13.7	0.8	1.6	1	1	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Peptidase_M29	PF02073.15	gi|564290840|ref|YP_008877159.1|	-	6.1e-60	203.1	0.0	7.3e-60	202.9	0.0	1.0	1	0	0	1	1	1	1	Thermophilic	metalloprotease	(M29)
DUF2099	PF09872.9	gi|564290840|ref|YP_008877159.1|	-	0.089	12.0	0.0	0.15	11.3	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2099)
T2SSF	PF00482.23	gi|564290841|ref|YP_008877160.1|	-	1.6e-16	60.4	1.9	1.1e-10	41.5	0.3	3.9	4	0	0	4	4	4	2	Type	II	secretion	system	(T2SS),	protein	F
AAA_32	PF13654.6	gi|564290841|ref|YP_008877160.1|	-	0.012	14.5	0.0	0.021	13.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|564290842|ref|YP_008877161.1|	-	1.1e-42	146.0	0.0	2.8e-42	144.7	0.0	1.6	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.6	gi|564290842|ref|YP_008877161.1|	-	0.0017	18.8	0.0	0.026	14.9	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|564290842|ref|YP_008877161.1|	-	0.0029	18.1	0.0	0.016	15.8	0.0	2.2	2	0	0	2	2	2	1	ABC	transporter
AAA_15	PF13175.6	gi|564290842|ref|YP_008877161.1|	-	0.0098	15.6	0.0	0.13	11.9	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564290842|ref|YP_008877161.1|	-	0.01	16.1	0.0	0.04	14.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|564290842|ref|YP_008877161.1|	-	0.031	13.8	0.0	0.058	12.9	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_23	PF13476.6	gi|564290842|ref|YP_008877161.1|	-	0.047	14.2	0.2	0.16	12.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_29	PF13555.6	gi|564290842|ref|YP_008877161.1|	-	0.055	13.2	0.1	0.21	11.4	0.0	1.9	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.23	gi|564290842|ref|YP_008877161.1|	-	0.12	12.5	0.0	0.21	11.7	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Sigma70_r1_1	PF03979.14	gi|564290842|ref|YP_008877161.1|	-	0.12	12.4	0.9	1.2	9.2	0.0	2.7	2	1	0	2	2	2	0	Sigma-70	factor,	region	1.1
ABM	PF03992.16	gi|564290842|ref|YP_008877161.1|	-	0.48	10.6	1.8	3.1	8.0	0.2	3.0	3	0	0	3	3	3	0	Antibiotic	biosynthesis	monooxygenase
ATPase	PF06745.13	gi|564290843|ref|YP_008877162.1|	-	1.1e-16	60.9	0.1	2.2e-16	59.9	0.1	1.4	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|564290843|ref|YP_008877162.1|	-	1.2e-07	31.5	0.0	1.7e-07	31.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564290843|ref|YP_008877162.1|	-	7.8e-05	23.0	0.0	0.00012	22.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|564290843|ref|YP_008877162.1|	-	0.0009	19.2	0.0	0.0048	16.8	0.0	1.9	1	1	0	1	1	1	1	NACHT	domain
AAA_16	PF13191.6	gi|564290843|ref|YP_008877162.1|	-	0.0028	18.1	0.0	0.004	17.5	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
Rad51	PF08423.11	gi|564290843|ref|YP_008877162.1|	-	0.02	14.1	0.2	0.049	12.9	0.2	1.7	1	1	0	1	1	1	0	Rad51
TsaE	PF02367.17	gi|564290843|ref|YP_008877162.1|	-	0.031	14.3	0.0	0.078	13.0	0.0	1.7	1	1	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
IstB_IS21	PF01695.17	gi|564290843|ref|YP_008877162.1|	-	0.031	14.0	0.0	0.061	13.1	0.0	1.4	1	1	0	1	1	1	0	IstB-like	ATP	binding	protein
PAXNEB	PF05625.11	gi|564290843|ref|YP_008877162.1|	-	0.083	12.0	0.1	1.6	7.8	0.1	2.0	2	0	0	2	2	2	0	PAXNEB	protein
FF	PF01846.19	gi|564290843|ref|YP_008877162.1|	-	0.086	13.0	0.4	0.44	10.8	0.1	2.1	2	0	0	2	2	2	0	FF	domain
DUF3843	PF12954.7	gi|564290843|ref|YP_008877162.1|	-	0.18	10.7	0.1	0.39	9.7	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3843)
Arch_flagellin	PF01917.16	gi|564290844|ref|YP_008877163.1|	-	1.6e-21	77.2	2.4	1.8e-21	77.0	2.4	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
CARDB	PF07705.11	gi|564290844|ref|YP_008877163.1|	-	1.5e-06	28.3	0.8	2e-06	28.0	0.8	1.3	1	0	0	1	1	1	1	CARDB
RskA	PF10099.9	gi|564290844|ref|YP_008877163.1|	-	0.17	12.2	0.1	20	5.4	0.0	2.0	1	1	1	2	2	2	0	Anti-sigma-K	factor	rskA
Arch_flagellin	PF01917.16	gi|564290845|ref|YP_008877164.1|	-	5.3e-12	46.2	5.1	6e-12	46.0	5.1	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
UCR_UQCRX_QCR9	PF05365.12	gi|564290845|ref|YP_008877164.1|	-	0.17	11.8	0.7	0.34	10.9	0.7	1.5	1	0	0	1	1	1	0	Ubiquinol-cytochrome	C	reductase,	UQCRX/QCR9	like
Arch_fla_DE	PF04659.13	gi|564290846|ref|YP_008877165.1|	-	3e-28	97.5	0.0	6.1e-28	96.5	0.0	1.5	1	0	0	1	1	1	1	Archaeal	flagella	protein
FlaC_arch	PF05377.11	gi|564290846|ref|YP_008877165.1|	-	2.5e-21	75.8	1.9	2.5e-21	75.8	1.9	1.7	2	0	0	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
Trypan_PARP	PF05887.11	gi|564290846|ref|YP_008877165.1|	-	0.0011	18.9	30.5	0.0011	18.9	30.5	3.0	2	1	1	3	3	2	1	Procyclic	acidic	repetitive	protein	(PARP)
Dynamitin	PF04912.14	gi|564290846|ref|YP_008877165.1|	-	0.0047	16.3	0.3	0.011	15.1	0.3	1.5	1	0	0	1	1	1	1	Dynamitin
Sec34	PF04136.15	gi|564290846|ref|YP_008877165.1|	-	0.066	13.1	0.0	0.37	10.7	0.0	2.1	3	0	0	3	3	3	0	Sec34-like	family
TonB_N	PF16031.5	gi|564290846|ref|YP_008877165.1|	-	0.081	13.4	21.8	0.13	12.8	21.8	1.2	1	0	0	1	1	1	0	TonB	polyproline	region
EzrA	PF06160.12	gi|564290846|ref|YP_008877165.1|	-	0.086	11.0	0.1	0.13	10.4	0.1	1.2	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
ZapB	PF06005.12	gi|564290846|ref|YP_008877165.1|	-	0.12	12.8	1.4	0.26	11.8	1.4	1.4	1	0	0	1	1	1	0	Cell	division	protein	ZapB
Dynactin_p22	PF07426.11	gi|564290846|ref|YP_008877165.1|	-	0.28	11.0	0.8	0.58	10.0	0.8	1.5	1	0	0	1	1	1	0	Dynactin	subunit	p22
JIP_LZII	PF16471.5	gi|564290846|ref|YP_008877165.1|	-	0.38	11.0	3.6	0.67	10.2	3.6	1.4	1	0	0	1	1	1	0	JNK-interacting	protein	leucine	zipper	II
bZIP_1	PF00170.21	gi|564290846|ref|YP_008877165.1|	-	0.4	10.8	2.0	2	8.6	2.0	1.9	1	1	0	1	1	1	0	bZIP	transcription	factor
Neisseria_TspB	PF05616.13	gi|564290846|ref|YP_008877165.1|	-	1.3	7.4	9.5	1.9	6.9	9.5	1.1	1	0	0	1	1	1	0	Neisseria	meningitidis	TspB	protein
CheD	PF03975.13	gi|564290847|ref|YP_008877166.1|	-	4.7e-29	100.7	0.1	6.3e-29	100.3	0.1	1.2	1	0	0	1	1	1	1	CheD	chemotactic	sensory	transduction
CheC	PF04509.12	gi|564290848|ref|YP_008877167.1|	-	3.2e-22	78.1	0.0	1.8e-10	40.5	0.0	2.4	2	0	0	2	2	2	2	CheC-like	family
CheX	PF13690.6	gi|564290848|ref|YP_008877167.1|	-	2.8e-19	69.1	0.6	5.6e-10	39.3	0.1	2.5	2	0	0	2	2	2	2	Chemotaxis	phosphatase	CheX
DUF3334	PF11813.8	gi|564290848|ref|YP_008877167.1|	-	0.046	13.4	1.9	0.19	11.4	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3334)
Response_reg	PF00072.24	gi|564290849|ref|YP_008877168.1|	-	1.2e-31	109.1	0.6	1.4e-31	109.0	0.6	1.0	1	0	0	1	1	1	1	Response	regulator	receiver	domain
QRPTase_C	PF01729.19	gi|564290849|ref|YP_008877168.1|	-	0.054	13.3	2.1	0.25	11.1	1.6	1.9	1	1	1	2	2	2	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
IMPDH	PF00478.25	gi|564290849|ref|YP_008877168.1|	-	0.064	12.2	0.3	0.083	11.9	0.3	1.1	1	0	0	1	1	1	0	IMP	dehydrogenase	/	GMP	reductase	domain
Caveolin	PF01146.17	gi|564291389|ref|YP_008877169.1|	-	0.24	11.4	1.5	0.83	9.6	1.5	1.9	1	0	0	1	1	1	0	Caveolin
Viral_env_E26	PF11050.8	gi|564290851|ref|YP_008877171.1|	-	0.19	11.1	0.0	0.26	10.6	0.0	1.1	1	0	0	1	1	1	0	Virus	envelope	protein	E26
Arch_flagellin	PF01917.16	gi|564290852|ref|YP_008877172.1|	-	7.3e-40	136.8	8.6	8.4e-40	136.6	8.6	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
Arch_flagellin	PF01917.16	gi|564290853|ref|YP_008877173.1|	-	1.9e-40	138.7	8.1	2.2e-40	138.5	8.1	1.0	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF202	PF02656.15	gi|564290854|ref|YP_008877174.1|	-	4	8.0	9.6	2.8	8.5	1.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF202)
HTH_20	PF12840.7	gi|564290855|ref|YP_008877175.1|	-	9.3e-11	41.6	0.0	1.9e-10	40.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564290855|ref|YP_008877175.1|	-	8.9e-06	25.2	0.0	1.7e-05	24.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564290855|ref|YP_008877175.1|	-	3.1e-05	23.7	0.0	5.5e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564290855|ref|YP_008877175.1|	-	8e-05	22.5	0.0	0.00014	21.7	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|564290855|ref|YP_008877175.1|	-	0.0011	18.8	0.0	0.0017	18.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564290855|ref|YP_008877175.1|	-	0.0027	17.7	0.0	0.0038	17.2	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564290855|ref|YP_008877175.1|	-	0.0067	16.2	0.0	0.016	15.0	0.0	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
TrmB	PF01978.19	gi|564290855|ref|YP_008877175.1|	-	0.0068	16.3	0.0	0.012	15.5	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HemN_C	PF06969.16	gi|564290855|ref|YP_008877175.1|	-	0.018	15.1	0.1	0.037	14.1	0.0	1.5	2	0	0	2	2	2	0	HemN	C-terminal	domain
DUF99	PF01949.16	gi|564290855|ref|YP_008877175.1|	-	0.099	12.0	0.1	0.12	11.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF99
RDV-p3	PF09231.10	gi|564290855|ref|YP_008877175.1|	-	0.099	10.3	0.1	0.1	10.3	0.1	1.0	1	0	0	1	1	1	0	Rice	dwarf	virus	p3
ATPase	PF06745.13	gi|564290856|ref|YP_008877176.1|	-	4.4e-49	166.9	0.0	5.1e-49	166.7	0.0	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.6	gi|564290856|ref|YP_008877176.1|	-	3.2e-08	33.4	0.0	4.7e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Rad51	PF08423.11	gi|564290856|ref|YP_008877176.1|	-	0.00018	20.8	0.0	0.00021	20.6	0.0	1.3	1	0	0	1	1	1	1	Rad51
DnaB_C	PF03796.15	gi|564290856|ref|YP_008877176.1|	-	0.001	18.4	0.0	0.0015	17.9	0.0	1.2	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
DUF2075	PF09848.9	gi|564290856|ref|YP_008877176.1|	-	0.017	14.3	0.0	0.023	13.9	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_24	PF13479.6	gi|564290856|ref|YP_008877176.1|	-	0.025	14.3	0.2	0.053	13.2	0.1	1.6	1	1	1	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|564290856|ref|YP_008877176.1|	-	0.033	14.2	0.1	0.063	13.3	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
Roc	PF08477.13	gi|564290856|ref|YP_008877176.1|	-	0.12	12.6	0.0	1.5	9.0	0.0	2.2	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_22	PF13401.6	gi|564290856|ref|YP_008877176.1|	-	0.13	12.5	0.0	0.2	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
CheW	PF01584.19	gi|564290857|ref|YP_008877177.1|	-	2.3e-27	95.3	0.6	2.6e-27	95.1	0.6	1.0	1	0	0	1	1	1	1	CheW-like	domain
CheB_methylest	PF01339.17	gi|564290858|ref|YP_008877178.1|	-	2.6e-55	186.7	0.2	5.8e-55	185.6	0.0	1.6	2	0	0	2	2	2	1	CheB	methylesterase
Response_reg	PF00072.24	gi|564290858|ref|YP_008877178.1|	-	4.4e-25	88.0	0.9	2e-24	85.9	0.3	2.2	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|564290859|ref|YP_008877179.1|	-	2.2e-19	70.0	0.1	5.1e-19	68.8	0.1	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
CheW	PF01584.19	gi|564290859|ref|YP_008877179.1|	-	2.6e-19	69.2	0.5	5.9e-19	68.1	0.5	1.6	1	0	0	1	1	1	1	CheW-like	domain
Hpt	PF01627.23	gi|564290859|ref|YP_008877179.1|	-	7.8e-19	67.7	2.3	1.6e-18	66.7	0.9	2.4	2	1	0	2	2	2	1	Hpt	domain
P2	PF07194.11	gi|564290859|ref|YP_008877179.1|	-	1.7e-08	34.4	0.0	1.7e-08	34.4	0.0	2.3	3	0	0	3	3	3	1	P2	response	regulator	binding	domain
H-kinase_dim	PF02895.14	gi|564290859|ref|YP_008877179.1|	-	0.00021	21.6	4.5	0.00026	21.3	2.6	2.3	2	0	0	2	2	2	1	Signal	transducing	histidine	kinase,	homodimeric	domain
HATPase_c_5	PF14501.6	gi|564290859|ref|YP_008877179.1|	-	0.01	15.8	0.0	0.06	13.3	0.0	2.2	2	1	0	2	2	2	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|564290859|ref|YP_008877179.1|	-	0.038	13.9	0.2	0.038	13.9	0.2	2.2	2	0	0	2	2	2	0	Histidine	kinase-like	ATPase	domain
CheR	PF01739.18	gi|564290860|ref|YP_008877180.1|	-	1.9e-47	161.3	0.0	2.3e-47	161.0	0.0	1.1	1	0	0	1	1	1	1	CheR	methyltransferase,	SAM	binding	domain
CheR_N	PF03705.15	gi|564290860|ref|YP_008877180.1|	-	1.1e-07	31.4	2.1	1.1e-07	31.4	2.1	2.3	3	0	0	3	3	3	1	CheR	methyltransferase,	all-alpha	domain
Methyltransf_12	PF08242.12	gi|564290860|ref|YP_008877180.1|	-	8.6e-05	23.2	0.0	0.0027	18.4	0.0	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290860|ref|YP_008877180.1|	-	0.00064	19.6	0.0	0.0019	18.0	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564290860|ref|YP_008877180.1|	-	0.00089	19.9	0.0	0.043	14.5	0.0	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
APAF1_C	PF17908.1	gi|564290860|ref|YP_008877180.1|	-	0.032	14.2	0.0	0.16	11.9	0.0	1.9	2	0	0	2	2	2	0	APAF-1	helical	domain
Methyltransf_11	PF08241.12	gi|564290860|ref|YP_008877180.1|	-	0.055	14.1	0.0	0.28	11.8	0.0	2.1	1	1	0	1	1	1	0	Methyltransferase	domain
Ubiquitin_3	PF14836.6	gi|564290860|ref|YP_008877180.1|	-	0.12	12.4	0.0	0.44	10.6	0.0	2.0	2	0	0	2	2	2	0	Ubiquitin-like	domain
HEAT_2	PF13646.6	gi|564290861|ref|YP_008877181.1|	-	1.2e-85	282.0	51.5	8.6e-19	67.7	2.5	6.0	1	1	7	8	8	8	8	HEAT	repeats
HEAT	PF02985.22	gi|564290861|ref|YP_008877181.1|	-	6.1e-31	103.8	4.4	0.0012	18.9	0.1	11.1	10	1	1	11	11	11	6	HEAT	repeat
HEAT_PBS	PF03130.16	gi|564290861|ref|YP_008877181.1|	-	1.4e-22	78.0	12.4	9.6e-05	22.7	0.4	10.1	10	0	0	10	10	10	4	PBS	lyase	HEAT-like	repeat
HEAT_EZ	PF13513.6	gi|564290861|ref|YP_008877181.1|	-	2.7e-22	78.8	17.3	0.02	15.4	0.0	9.7	9	2	1	10	10	10	6	HEAT-like	repeat
Arm	PF00514.23	gi|564290861|ref|YP_008877181.1|	-	3.4e-15	55.5	0.9	0.02	14.9	0.0	8.7	9	0	0	9	9	9	3	Armadillo/beta-catenin-like	repeat
Cnd1	PF12717.7	gi|564290861|ref|YP_008877181.1|	-	3.7e-14	53.1	5.5	0.0048	16.9	0.1	6.0	2	1	4	6	6	6	3	non-SMC	mitotic	condensation	complex	subunit	1
Adaptin_N	PF01602.20	gi|564290861|ref|YP_008877181.1|	-	2.6e-10	39.5	1.3	0.00071	18.3	0.2	4.7	2	1	3	5	5	5	2	Adaptin	N	terminal	region
ERAP1_C	PF11838.8	gi|564290861|ref|YP_008877181.1|	-	1.9e-06	27.7	2.9	0.02	14.5	0.1	3.2	1	1	1	3	3	3	2	ERAP1-like	C-terminal	domain
Vac14_Fab1_bd	PF12755.7	gi|564290861|ref|YP_008877181.1|	-	0.00022	21.8	0.3	2.5	8.8	0.0	5.0	2	1	3	5	5	5	1	Vacuolar	14	Fab1-binding	region
API5	PF05918.11	gi|564290861|ref|YP_008877181.1|	-	0.00087	18.2	4.5	0.37	9.6	0.5	3.1	2	1	0	3	3	3	2	Apoptosis	inhibitory	protein	5	(API5)
Vitellogenin_N	PF01347.22	gi|564290861|ref|YP_008877181.1|	-	0.0012	17.4	0.0	0.17	10.2	0.0	2.9	2	1	1	3	3	3	1	Lipoprotein	amino	terminal	region
ThylakoidFormat	PF11264.8	gi|564290861|ref|YP_008877181.1|	-	0.0073	16.0	0.0	2.4	7.8	0.0	2.7	3	0	0	3	3	3	1	Thylakoid	formation	protein
RTP1_C1	PF10363.9	gi|564290861|ref|YP_008877181.1|	-	0.0093	16.1	1.5	1.8	8.8	0.4	4.3	3	2	1	4	4	4	1	Required	for	nuclear	transport	of	RNA	pol	II	C-terminus	1
Cohesin_HEAT	PF12765.7	gi|564290861|ref|YP_008877181.1|	-	0.015	15.6	7.5	2.8	8.3	0.1	4.3	3	1	1	4	4	4	0	HEAT	repeat	associated	with	sister	chromatid	cohesion
DUF2019	PF09450.10	gi|564290861|ref|YP_008877181.1|	-	0.026	14.4	1.3	0.78	9.7	0.1	3.5	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF2019)
Dopey_N	PF04118.14	gi|564290861|ref|YP_008877181.1|	-	0.079	12.1	0.0	0.19	10.8	0.0	1.6	1	0	0	1	1	1	0	Dopey,	N-terminal
CLASP_N	PF12348.8	gi|564290861|ref|YP_008877181.1|	-	0.09	12.3	0.9	1.3	8.6	0.0	3.1	2	1	0	3	3	3	0	CLASP	N	terminal
GlutR_dimer	PF00745.20	gi|564290861|ref|YP_008877181.1|	-	0.1	13.0	4.4	4.6	7.7	0.4	3.8	3	1	1	4	4	4	0	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
RasGEF_N_2	PF14663.6	gi|564290861|ref|YP_008877181.1|	-	0.44	11.0	3.8	1.2e+02	3.1	0.0	4.7	3	1	1	5	5	5	0	Rapamycin-insensitive	companion	of	mTOR	RasGEF_N	domain
CheF-arch	PF04283.12	gi|564290862|ref|YP_008877182.1|	-	1.8e-69	233.8	0.4	2.3e-69	233.5	0.4	1.1	1	0	0	1	1	1	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
bPH_2	PF03703.14	gi|564290862|ref|YP_008877182.1|	-	0.022	15.0	0.0	0.11	12.7	0.0	2.2	2	0	0	2	2	2	0	Bacterial	PH	domain
Ribosomal_S6e	PF01092.19	gi|564290863|ref|YP_008877183.1|	-	1.2e-40	138.3	0.1	1.4e-40	138.1	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S6e
CheF-arch	PF04283.12	gi|564290865|ref|YP_008877185.1|	-	6.8e-70	235.2	0.3	1.6e-69	234.0	0.1	1.6	2	0	0	2	2	2	1	Chemotaxis	signal	transduction	system	protein	F	from	archaea
TrmB	PF01978.19	gi|564290865|ref|YP_008877185.1|	-	0.0007	19.4	0.0	0.0012	18.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF3553	PF12073.8	gi|564290865|ref|YP_008877185.1|	-	0.044	13.5	0.0	0.13	12.0	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3553)
MarR_2	PF12802.7	gi|564290865|ref|YP_008877185.1|	-	0.11	12.4	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DHH	PF01368.20	gi|564290869|ref|YP_008877189.1|	-	0.0023	18.1	0.1	0.005	17.1	0.1	1.5	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.19	gi|564290869|ref|YP_008877189.1|	-	0.0079	16.6	0.1	0.019	15.4	0.1	1.6	1	0	0	1	1	1	1	DHHA1	domain
DUF3364	PF11844.8	gi|564290869|ref|YP_008877189.1|	-	0.069	13.4	2.4	0.33	11.2	0.7	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3364)
DUF2795	PF11387.8	gi|564290869|ref|YP_008877189.1|	-	0.21	11.8	4.9	3.5	7.9	0.0	3.9	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2795)
ETF	PF01012.21	gi|564290869|ref|YP_008877189.1|	-	0.23	11.4	2.4	0.23	11.3	0.6	1.8	2	0	0	2	2	2	0	Electron	transfer	flavoprotein	domain
Usp	PF00582.26	gi|564290870|ref|YP_008877190.1|	-	6.1e-36	124.0	2.5	7e-36	123.8	2.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|564290870|ref|YP_008877190.1|	-	0.0082	16.2	0.1	0.016	15.3	0.1	1.4	1	1	0	1	1	1	1	DNA	photolyase
GGDEF_2	PF17853.1	gi|564290870|ref|YP_008877190.1|	-	0.021	15.1	1.0	0.036	14.3	1.0	1.5	1	1	0	1	1	1	0	GGDEF-like	domain
DUF1778	PF08681.11	gi|564290870|ref|YP_008877190.1|	-	0.081	12.9	0.3	0.19	11.6	0.3	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1778)
Usp	PF00582.26	gi|564290871|ref|YP_008877191.1|	-	2.3e-18	67.1	1.8	4.7e-18	66.0	1.8	1.5	1	0	0	1	1	1	1	Universal	stress	protein	family
Acetyltransf_1	PF00583.25	gi|564290872|ref|YP_008877192.1|	-	1.9e-19	70.0	0.0	2.5e-19	69.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.7	gi|564290872|ref|YP_008877192.1|	-	8.9e-14	51.5	0.0	1.2e-13	51.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.7	gi|564290872|ref|YP_008877192.1|	-	8.7e-13	48.5	0.0	1.3e-12	48.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.7	gi|564290872|ref|YP_008877192.1|	-	3e-09	37.7	0.0	3.6e-09	37.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.10	gi|564290872|ref|YP_008877192.1|	-	8.4e-07	28.9	0.0	1.5e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.7	gi|564290872|ref|YP_008877192.1|	-	0.0038	17.4	0.0	0.0048	17.0	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.7	gi|564290872|ref|YP_008877192.1|	-	0.0076	16.3	0.0	0.71	10.0	0.0	2.1	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.7	gi|564290872|ref|YP_008877192.1|	-	0.013	15.7	0.0	0.016	15.3	0.0	1.1	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564290872|ref|YP_008877192.1|	-	0.041	14.0	0.1	0.067	13.3	0.1	1.3	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
GNAT_acetyltran	PF12746.7	gi|564290872|ref|YP_008877192.1|	-	0.046	13.3	0.0	0.063	12.8	0.0	1.1	1	0	0	1	1	1	0	GNAT	acetyltransferase
PUA_3	PF17785.1	gi|564290872|ref|YP_008877192.1|	-	0.084	12.7	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	PUA-like	domain
Usp	PF00582.26	gi|564290873|ref|YP_008877193.1|	-	2.9e-13	50.5	0.0	2.3e-11	44.4	0.0	2.0	1	1	0	1	1	1	1	Universal	stress	protein	family
Plasmid_RAQPRD	PF09686.10	gi|564290873|ref|YP_008877193.1|	-	0.033	14.4	0.1	0.093	13.0	0.1	1.7	1	1	0	1	1	1	0	Plasmid	protein	of	unknown	function	(Plasmid_RAQPRD)
DAGK_cat	PF00781.24	gi|564290873|ref|YP_008877193.1|	-	0.073	12.7	0.0	0.12	12.0	0.0	1.4	1	1	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
HalX	PF08663.10	gi|564290873|ref|YP_008877193.1|	-	0.83	10.0	3.7	2.8	8.3	0.6	2.6	2	1	1	3	3	3	0	HalX	domain
DUF4203	PF13886.6	gi|564290875|ref|YP_008877195.1|	-	0.094	12.4	11.0	0.14	11.8	11.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4203)
SLATT_3	PF18184.1	gi|564290875|ref|YP_008877195.1|	-	6.2	7.0	5.6	2.9	8.0	0.1	2.0	2	0	0	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	3
ABC_tran	PF00005.27	gi|564290877|ref|YP_008877197.1|	-	1.9e-57	193.6	0.0	7.5e-32	110.7	0.0	3.4	2	1	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|564290877|ref|YP_008877197.1|	-	3.7e-37	126.6	0.8	1.8e-19	70.0	0.1	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|564290877|ref|YP_008877197.1|	-	4.7e-12	46.3	0.5	1.5e-05	25.0	0.0	4.0	3	1	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|564290877|ref|YP_008877197.1|	-	2.6e-06	27.9	0.0	0.025	15.0	0.0	2.8	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564290877|ref|YP_008877197.1|	-	1.9e-05	24.9	0.6	0.028	14.7	0.0	3.4	3	1	0	3	3	3	1	AAA	domain
SMC_N	PF02463.19	gi|564290877|ref|YP_008877197.1|	-	4.9e-05	22.9	0.1	0.3	10.5	0.0	3.5	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564290877|ref|YP_008877197.1|	-	0.00027	20.6	1.4	0.67	9.7	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AIG1	PF04548.16	gi|564290877|ref|YP_008877197.1|	-	0.0008	18.8	2.3	0.39	10.0	0.2	3.3	3	0	0	3	3	3	1	AIG1	family
AAA_7	PF12775.7	gi|564290877|ref|YP_008877197.1|	-	0.0013	18.3	0.2	0.51	9.8	0.0	2.2	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_25	PF13481.6	gi|564290877|ref|YP_008877197.1|	-	0.0031	17.1	1.8	2.9	7.4	0.2	4.2	4	1	0	4	4	4	1	AAA	domain
ATP-synt_ab	PF00006.25	gi|564290877|ref|YP_008877197.1|	-	0.0043	16.7	0.0	0.31	10.7	0.0	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_5	PF07728.14	gi|564290877|ref|YP_008877197.1|	-	0.012	15.7	0.2	0.81	9.7	0.0	2.8	3	0	0	3	3	2	0	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|564290877|ref|YP_008877197.1|	-	0.016	15.7	0.0	1.3	9.4	0.0	3.6	4	0	0	4	4	4	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|564290877|ref|YP_008877197.1|	-	0.033	14.1	0.3	5	7.0	0.0	2.4	2	0	0	2	2	2	0	RsgA	GTPase
PRK	PF00485.18	gi|564290877|ref|YP_008877197.1|	-	0.036	13.8	0.3	1.5	8.5	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Sigma54_activat	PF00158.26	gi|564290877|ref|YP_008877197.1|	-	0.064	13.0	0.2	17	5.1	0.0	2.9	3	0	0	3	3	3	0	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|564290877|ref|YP_008877197.1|	-	0.073	12.8	0.0	12	5.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|564290877|ref|YP_008877197.1|	-	0.17	12.3	0.2	8.5	6.8	0.0	2.4	2	0	0	2	2	2	0	RNA	helicase
Hpr_kinase_C	PF07475.12	gi|564290877|ref|YP_008877197.1|	-	0.2	11.2	2.1	2.8	7.4	0.1	2.4	2	0	0	2	2	2	0	HPr	Serine	kinase	C-terminal	domain
ATPase	PF06745.13	gi|564290877|ref|YP_008877197.1|	-	0.27	10.6	0.7	20	4.4	0.0	2.4	2	0	0	2	2	2	0	KaiC
DUF87	PF01935.17	gi|564290877|ref|YP_008877197.1|	-	0.3	11.1	1.2	8.2	6.4	0.1	2.4	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
NB-ARC	PF00931.22	gi|564290877|ref|YP_008877197.1|	-	0.37	9.9	0.9	16	4.6	0.1	2.2	2	0	0	2	2	2	0	NB-ARC	domain
SBP_bac_5	PF00496.22	gi|564290878|ref|YP_008877198.1|	-	1.3e-78	264.6	4.0	1.8e-78	264.2	4.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|564290878|ref|YP_008877198.1|	-	1.9e-05	24.3	6.4	3.6e-05	23.4	6.4	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SOXp	PF12336.8	gi|564290878|ref|YP_008877198.1|	-	0.15	13.2	0.1	0.54	11.4	0.1	1.9	1	0	0	1	1	1	0	SOX	transcription	factor
BPD_transp_1	PF00528.22	gi|564290879|ref|YP_008877199.1|	-	1.5e-38	132.4	12.8	1.5e-38	132.4	12.8	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564290880|ref|YP_008877200.1|	-	2.8e-34	118.5	7.7	2.8e-34	118.5	7.7	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|564290880|ref|YP_008877200.1|	-	7.8e-05	22.6	0.1	7.8e-05	22.6	0.1	3.0	3	1	0	3	3	3	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
CbtB	PF09489.10	gi|564290881|ref|YP_008877201.1|	-	0.93	9.7	3.4	0.93	9.6	0.2	2.3	2	0	0	2	2	2	0	Probable	cobalt	transporter	subunit	(CbtB)
Amidohydro_1	PF01979.20	gi|564290882|ref|YP_008877202.1|	-	1.5e-26	93.6	0.1	3.3e-26	92.4	0.1	1.5	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564290882|ref|YP_008877202.1|	-	3.1e-15	56.6	6.9	3.3e-07	30.1	3.6	3.1	1	1	0	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.21	gi|564290882|ref|YP_008877202.1|	-	0.00044	19.7	0.5	0.014	14.8	0.1	2.8	1	1	1	2	2	2	1	TatD	related	DNase
Usp	PF00582.26	gi|564290882|ref|YP_008877202.1|	-	0.032	14.8	0.3	0.032	14.8	0.3	2.3	3	0	0	3	3	3	0	Universal	stress	protein	family
DHOase	PF12890.7	gi|564290882|ref|YP_008877202.1|	-	0.044	13.7	0.0	0.17	11.8	0.0	1.9	1	1	0	1	1	1	0	Dihydro-orotase-like
BPL_LplA_LipB	PF03099.19	gi|564290883|ref|YP_008877203.1|	-	0.0018	18.2	0.0	0.0032	17.4	0.0	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Peptidase_M23	PF01551.22	gi|564290884|ref|YP_008877204.1|	-	0.0093	16.2	0.0	0.031	14.5	0.0	1.8	2	0	0	2	2	2	1	Peptidase	family	M23
Isochorismatase	PF00857.20	gi|564290885|ref|YP_008877205.1|	-	1.4e-49	168.7	0.0	1.5e-49	168.5	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
Peptidase_M78	PF06114.13	gi|564290886|ref|YP_008877206.1|	-	0.028	14.3	0.0	0.054	13.4	0.0	1.4	1	0	0	1	1	1	0	IrrE	N-terminal-like	domain
Peptidase_M76	PF09768.9	gi|564290886|ref|YP_008877206.1|	-	0.23	11.2	0.0	0.34	10.7	0.0	1.2	1	0	0	1	1	1	0	Peptidase	M76	family
Peptidase_M78	PF06114.13	gi|564290887|ref|YP_008877207.1|	-	0.0082	16.1	0.0	0.02	14.8	0.0	1.6	1	0	0	1	1	1	1	IrrE	N-terminal-like	domain
QRPTase_C	PF01729.19	gi|564290888|ref|YP_008877208.1|	-	1.5e-16	60.6	0.0	2.1e-16	60.2	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.16	gi|564290888|ref|YP_008877208.1|	-	0.00017	21.6	0.0	0.0005	20.1	0.0	1.8	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Virulence_fact	PF13769.6	gi|564290888|ref|YP_008877208.1|	-	0.17	12.2	0.1	0.45	10.8	0.1	1.7	1	0	0	1	1	1	0	Virulence	factor
NAPRTase_N	PF17767.1	gi|564290888|ref|YP_008877208.1|	-	0.17	12.3	0.0	0.72	10.2	0.0	1.8	1	1	1	2	2	2	0	Nicotinate	phosphoribosyltransferase	(NAPRTase)	N-terminal	domain
Cys_rich_CPCC	PF14206.6	gi|564290890|ref|YP_008877210.1|	-	1.1e-27	95.7	1.0	1.3e-27	95.5	1.0	1.1	1	0	0	1	1	1	1	Cysteine-rich	CPCC
Zip	PF02535.22	gi|564290891|ref|YP_008877211.1|	-	5.7e-17	61.9	12.8	4.5e-12	45.8	6.4	2.1	1	1	1	2	2	2	2	ZIP	Zinc	transporter
YhhN	PF07947.14	gi|564290891|ref|YP_008877211.1|	-	0.35	10.5	6.1	0.17	11.5	0.5	2.6	2	1	0	3	3	3	0	YhhN	family
GtrA	PF04138.14	gi|564290891|ref|YP_008877211.1|	-	0.35	11.1	0.0	0.35	11.1	0.0	2.4	3	1	0	3	3	3	0	GtrA-like	protein
Peptidase_M50	PF02163.22	gi|564290892|ref|YP_008877212.1|	-	4.8e-16	58.8	5.6	3.2e-08	33.2	0.2	2.8	1	1	1	2	2	2	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|564290892|ref|YP_008877212.1|	-	1e-05	25.3	13.0	1e-05	25.3	13.0	2.3	1	1	0	1	1	1	1	Peptidase	M50B-like
CBS	PF00571.28	gi|564290892|ref|YP_008877212.1|	-	0.0023	18.3	1.4	0.016	15.6	0.3	2.3	2	0	0	2	2	2	1	CBS	domain
Lactamase_B_3	PF13483.6	gi|564290893|ref|YP_008877213.1|	-	1.5e-25	90.0	0.0	1.9e-25	89.7	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.7	gi|564290893|ref|YP_008877213.1|	-	0.0074	15.8	0.1	0.012	15.1	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
IF-2B	PF01008.17	gi|564290894|ref|YP_008877214.1|	-	5.4e-46	157.1	0.3	6.6e-46	156.8	0.3	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
NUDIX	PF00293.28	gi|564290894|ref|YP_008877214.1|	-	2.3e-11	43.9	0.3	4.7e-11	42.8	0.2	1.6	1	1	0	1	1	1	1	NUDIX	domain
Aminotran_5	PF00266.19	gi|564290895|ref|YP_008877215.1|	-	1.5e-55	188.7	0.0	1.9e-55	188.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Aminotran_1_2	PF00155.21	gi|564290895|ref|YP_008877215.1|	-	1.7e-06	27.5	0.0	0.00061	19.1	0.0	2.2	2	0	0	2	2	2	2	Aminotransferase	class	I	and	II
DUF4091	PF13320.6	gi|564290895|ref|YP_008877215.1|	-	0.078	13.1	0.1	0.27	11.4	0.1	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4091)
Cys_Met_Meta_PP	PF01053.20	gi|564290895|ref|YP_008877215.1|	-	0.2	10.1	0.0	0.27	9.7	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
Optomotor-blind	PF11078.8	gi|564290895|ref|YP_008877215.1|	-	0.31	11.6	2.4	19	5.9	0.0	3.5	3	1	0	3	3	3	0	Optomotor-blind	protein	N-terminal	region
Relaxase	PF03432.14	gi|564290896|ref|YP_008877216.1|	-	0.058	13.0	0.1	0.085	12.4	0.1	1.3	1	0	0	1	1	1	0	Relaxase/Mobilisation	nuclease	domain
SCAB-ABD	PF16711.5	gi|564290896|ref|YP_008877216.1|	-	0.082	12.8	0.0	0.19	11.6	0.0	1.6	1	0	0	1	1	1	0	Actin-binding	domain	of	plant-specific	actin-binding	protein
DUF2525	PF10733.9	gi|564290896|ref|YP_008877216.1|	-	0.6	10.4	3.3	84	3.6	0.0	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2525)
Spc7	PF08317.11	gi|564290897|ref|YP_008877217.1|	-	1e-06	27.9	69.6	0.00071	18.5	12.1	4.7	2	2	2	4	4	4	4	Spc7	kinetochore	protein
SHE3	PF17078.5	gi|564290897|ref|YP_008877217.1|	-	1.2e-05	25.2	48.2	2.9e-05	23.9	21.8	2.4	2	0	0	2	2	2	1	SWI5-dependent	HO	expression	protein	3
Seryl_tRNA_N	PF02403.22	gi|564290897|ref|YP_008877217.1|	-	1.3e-05	25.4	59.3	0.00016	21.8	6.3	5.2	2	2	3	5	5	5	3	Seryl-tRNA	synthetase	N-terminal	domain
DUF5082	PF16888.5	gi|564290897|ref|YP_008877217.1|	-	0.00036	20.8	53.4	0.017	15.4	13.7	7.2	2	2	4	6	6	6	3	Domain	of	unknown	function	(DUF5082)
DUF4407	PF14362.6	gi|564290897|ref|YP_008877217.1|	-	0.0022	17.4	42.8	0.059	12.7	6.5	3.3	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF4407)
Golgin_A5	PF09787.9	gi|564290897|ref|YP_008877217.1|	-	0.0028	17.2	78.3	0.021	14.3	7.4	4.1	1	1	1	3	3	3	2	Golgin	subfamily	A	member	5
Laminin_II	PF06009.12	gi|564290897|ref|YP_008877217.1|	-	0.004	17.2	35.9	0.0067	16.5	9.6	4.8	3	2	2	5	5	5	2	Laminin	Domain	II
Uso1_p115_C	PF04871.13	gi|564290897|ref|YP_008877217.1|	-	0.0095	16.3	15.6	0.0095	16.3	15.6	5.3	3	2	2	5	5	3	1	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
BRE1	PF08647.11	gi|564290897|ref|YP_008877217.1|	-	0.0097	16.0	11.8	0.0097	16.0	11.8	5.9	5	1	1	6	6	6	1	BRE1	E3	ubiquitin	ligase
GAS	PF13851.6	gi|564290897|ref|YP_008877217.1|	-	0.012	15.0	62.9	0.062	12.7	23.4	4.4	2	2	2	4	4	4	0	Growth-arrest	specific	micro-tubule	binding
Atg14	PF10186.9	gi|564290897|ref|YP_008877217.1|	-	0.022	13.9	55.1	0.86	8.6	10.7	4.4	2	2	2	4	4	4	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
DivIC	PF04977.15	gi|564290897|ref|YP_008877217.1|	-	0.023	14.5	0.9	0.023	14.5	0.9	8.7	4	2	5	9	9	8	0	Septum	formation	initiator
DUF3584	PF12128.8	gi|564290897|ref|YP_008877217.1|	-	0.031	11.8	60.4	0.16	9.4	24.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
FlaC_arch	PF05377.11	gi|564290897|ref|YP_008877217.1|	-	0.031	14.7	1.6	0.031	14.7	1.6	8.7	6	3	2	8	8	5	0	Flagella	accessory	protein	C	(FlaC)
NPV_P10	PF05531.12	gi|564290897|ref|YP_008877217.1|	-	0.04	14.4	38.2	0.13	12.7	0.9	7.0	3	2	2	6	6	6	0	Nucleopolyhedrovirus	P10	protein
ATG16	PF08614.11	gi|564290897|ref|YP_008877217.1|	-	0.065	13.4	73.5	0.046	13.9	13.8	5.0	1	1	3	4	4	4	0	Autophagy	protein	16	(ATG16)
AAA_23	PF13476.6	gi|564290897|ref|YP_008877217.1|	-	0.066	13.7	66.3	8.9e+02	0.2	15.2	4.6	1	1	1	2	2	1	0	AAA	domain
Med9	PF07544.13	gi|564290897|ref|YP_008877217.1|	-	0.071	13.2	54.2	0.32	11.1	5.2	5.7	2	2	2	5	5	5	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF1664	PF07889.12	gi|564290897|ref|YP_008877217.1|	-	0.14	12.2	43.1	0.43	10.6	2.4	5.6	2	2	2	5	5	5	0	Protein	of	unknown	function	(DUF1664)
Baculo_PEP_C	PF04513.12	gi|564290897|ref|YP_008877217.1|	-	0.15	12.1	23.5	2.1	8.4	0.9	4.9	3	2	2	5	5	4	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Tropomyosin_1	PF12718.7	gi|564290897|ref|YP_008877217.1|	-	0.21	11.7	90.4	0.066	13.4	23.8	5.1	2	2	3	5	5	5	0	Tropomyosin	like
TPR_MLP1_2	PF07926.12	gi|564290897|ref|YP_008877217.1|	-	0.3	11.1	66.6	0.59	10.2	17.8	5.7	2	2	2	4	4	4	0	TPR/MLP1/MLP2-like	protein
HemX	PF04375.14	gi|564290897|ref|YP_008877217.1|	-	0.46	9.7	40.5	2.1	7.5	6.5	4.3	2	2	2	4	4	4	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
CEP63	PF17045.5	gi|564290897|ref|YP_008877217.1|	-	0.47	10.3	52.4	0.29	11.0	20.9	2.4	2	0	0	2	2	2	0	Centrosomal	protein	of	63	kDa
DUF3450	PF11932.8	gi|564290897|ref|YP_008877217.1|	-	0.54	9.5	59.1	0.087	12.1	5.4	5.7	3	2	4	7	7	6	0	Protein	of	unknown	function	(DUF3450)
Fib_alpha	PF08702.10	gi|564290897|ref|YP_008877217.1|	-	0.62	10.3	45.8	0.35	11.1	11.4	4.6	3	1	1	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Fez1	PF06818.15	gi|564290897|ref|YP_008877217.1|	-	0.97	9.9	61.2	4.8	7.6	26.2	3.6	1	1	2	3	3	3	0	Fez1
APG6_N	PF17675.1	gi|564290897|ref|YP_008877217.1|	-	1.1	9.8	89.7	1.7	9.1	20.7	6.1	1	1	2	4	4	4	0	Apg6	coiled-coil	region
CENP-F_leu_zip	PF10473.9	gi|564290897|ref|YP_008877217.1|	-	1.1	9.3	79.8	1.5	8.8	16.3	5.4	1	1	5	6	6	6	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ERM	PF00769.19	gi|564290897|ref|YP_008877217.1|	-	1.3	8.8	66.4	2.8	7.7	31.0	2.9	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
Spectrin	PF00435.21	gi|564290897|ref|YP_008877217.1|	-	1.6	9.2	56.1	10	6.7	4.5	6.1	2	2	2	5	5	5	0	Spectrin	repeat
FAM76	PF16046.5	gi|564290897|ref|YP_008877217.1|	-	1.7	7.9	31.4	1.2	8.4	6.8	2.6	2	1	0	2	2	2	0	FAM76	protein
Lectin_N	PF03954.14	gi|564290897|ref|YP_008877217.1|	-	1.8	8.3	22.0	0.12	12.1	0.6	4.7	2	2	3	5	5	5	0	Hepatic	lectin,	N-terminal	domain
DASH_Dam1	PF08653.10	gi|564290897|ref|YP_008877217.1|	-	1.8	8.4	22.8	31	4.4	0.1	7.3	5	1	2	7	7	7	0	DASH	complex	subunit	Dam1
KASH_CCD	PF14662.6	gi|564290897|ref|YP_008877217.1|	-	2	8.2	65.3	0.35	10.7	14.3	3.9	2	2	1	3	3	3	0	Coiled-coil	region	of	CCDC155	or	KASH
DUF4200	PF13863.6	gi|564290897|ref|YP_008877217.1|	-	2.2	8.7	66.0	0.15	12.5	14.2	6.0	3	2	2	5	5	5	0	Domain	of	unknown	function	(DUF4200)
FapA	PF03961.13	gi|564290897|ref|YP_008877217.1|	-	2.5	6.6	49.2	1.8	7.1	4.9	4.2	1	1	3	4	4	4	0	Flagellar	Assembly	Protein	A
HMMR_N	PF15905.5	gi|564290897|ref|YP_008877217.1|	-	2.5	7.5	68.8	1.2	8.5	29.0	3.0	2	2	0	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
IFT57	PF10498.9	gi|564290897|ref|YP_008877217.1|	-	2.6	6.9	47.0	0.19	10.6	18.6	3.3	2	2	1	3	3	3	0	Intra-flagellar	transport	protein	57
MAD	PF05557.13	gi|564290897|ref|YP_008877217.1|	-	2.8	6.2	65.5	0.15	10.4	29.1	2.3	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
OmpH	PF03938.14	gi|564290897|ref|YP_008877217.1|	-	3.3	8.1	53.7	7.7	6.8	11.6	4.4	2	2	2	4	4	4	0	Outer	membrane	protein	(OmpH-like)
Phage_GP20	PF06810.11	gi|564290897|ref|YP_008877217.1|	-	4	7.2	55.0	2.2	8.1	4.5	6.2	2	2	3	6	6	6	0	Phage	minor	structural	protein	GP20
Fmp27_WPPW	PF10359.9	gi|564290897|ref|YP_008877217.1|	-	4.3	6.1	52.2	0.19	10.6	10.1	4.1	1	1	2	3	3	2	0	RNA	pol	II	promoter	Fmp27	protein	domain
Filament	PF00038.21	gi|564290897|ref|YP_008877217.1|	-	6.1	6.3	70.1	0.17	11.4	25.1	4.9	1	1	3	5	5	5	0	Intermediate	filament	protein
FlxA	PF14282.6	gi|564290897|ref|YP_008877217.1|	-	6.4	6.8	48.6	0.21	11.6	5.4	5.2	2	2	2	5	5	5	0	FlxA-like	protein
Occludin_ELL	PF07303.13	gi|564290897|ref|YP_008877217.1|	-	6.8	7.5	31.5	9.1	7.1	0.2	4.8	2	2	1	4	4	4	0	Occludin	homology	domain
DUF4201	PF13870.6	gi|564290897|ref|YP_008877217.1|	-	7.8	6.2	55.5	1.1	8.9	22.0	4.2	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4201)
DUF724	PF05266.14	gi|564290897|ref|YP_008877217.1|	-	8.5	6.2	54.6	0.76	9.6	15.7	4.5	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF724)
CRCB	PF02537.15	gi|564290899|ref|YP_008877219.1|	-	1.2e-16	60.7	12.0	2.1e-16	60.0	12.0	1.3	1	1	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
CRCB	PF02537.15	gi|564290900|ref|YP_008877220.1|	-	1.7e-21	76.3	12.5	1.9e-21	76.1	12.5	1.0	1	0	0	1	1	1	1	CrcB-like	protein,	Camphor	Resistance	(CrcB)
DUF853	PF05872.12	gi|564290901|ref|YP_008877221.1|	-	5.8e-07	28.5	0.6	0.00087	18.0	0.1	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
DUF87	PF01935.17	gi|564290901|ref|YP_008877221.1|	-	2.2e-06	28.0	0.0	3.3e-06	27.4	0.0	1.3	1	0	0	1	1	1	1	Helicase	HerA,	central	domain
TrwB_AAD_bind	PF10412.9	gi|564290901|ref|YP_008877221.1|	-	2.4e-05	23.4	0.0	0.024	13.6	0.0	2.1	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.18	gi|564290901|ref|YP_008877221.1|	-	0.0021	17.4	0.0	0.37	10.1	0.0	2.4	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
AAA_22	PF13401.6	gi|564290901|ref|YP_008877221.1|	-	0.015	15.6	0.0	0.96	9.7	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|564290901|ref|YP_008877221.1|	-	0.018	14.7	2.3	0.22	11.2	2.3	2.3	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|564290901|ref|YP_008877221.1|	-	0.024	13.9	0.1	0.056	12.7	0.1	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_16	PF13191.6	gi|564290901|ref|YP_008877221.1|	-	0.029	14.8	0.2	0.064	13.6	0.2	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.6	gi|564290901|ref|YP_008877221.1|	-	0.05	13.9	0.0	0.22	11.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
CbiA	PF01656.23	gi|564290901|ref|YP_008877221.1|	-	0.099	12.7	0.0	3.4	7.7	0.0	2.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ResIII	PF04851.15	gi|564290901|ref|YP_008877221.1|	-	0.14	12.2	0.0	3.3	7.7	0.0	2.1	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
KH_4	PF13083.6	gi|564290901|ref|YP_008877221.1|	-	0.4	10.6	1.2	1.5	8.8	0.1	2.2	2	0	0	2	2	2	0	KH	domain
Big_1	PF02369.16	gi|564290902|ref|YP_008877222.1|	-	1.3e-05	25.1	8.9	4.4e-05	23.4	8.3	2.0	1	1	1	2	2	2	1	Bacterial	Ig-like	domain	(group	1)
CarboxypepD_reg	PF13620.6	gi|564290902|ref|YP_008877222.1|	-	0.00012	22.3	5.3	0.00025	21.3	5.1	1.7	1	1	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
MG4	PF17789.1	gi|564290902|ref|YP_008877222.1|	-	0.002	18.2	0.5	0.006	16.7	0.5	1.8	1	1	0	1	1	1	1	Macroglobulin	domain	MG4
Invasin_D3	PF09134.10	gi|564290902|ref|YP_008877222.1|	-	0.0026	18.0	5.6	0.0046	17.2	5.5	1.6	1	1	0	1	1	1	1	Invasin,	domain	3
YtkA	PF13115.6	gi|564290902|ref|YP_008877222.1|	-	0.013	16.1	2.4	0.052	14.1	2.4	1.9	1	1	1	2	2	2	0	YtkA-like
PCMT	PF01135.19	gi|564290903|ref|YP_008877223.1|	-	2.6e-37	128.6	0.0	3.3e-37	128.3	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.6	gi|564290903|ref|YP_008877223.1|	-	3e-08	33.6	0.0	4e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564290903|ref|YP_008877223.1|	-	6e-07	30.1	0.0	1.6e-06	28.7	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564290903|ref|YP_008877223.1|	-	4.7e-06	26.3	0.1	1.2e-05	24.9	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.12	gi|564290903|ref|YP_008877223.1|	-	0.0005	20.8	0.0	0.00091	19.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564290903|ref|YP_008877223.1|	-	0.0073	16.9	0.0	0.017	15.7	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.20	gi|564290903|ref|YP_008877223.1|	-	0.0082	15.2	0.0	0.013	14.6	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_32	PF13679.6	gi|564290903|ref|YP_008877223.1|	-	0.017	15.1	0.0	0.032	14.2	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltr_RsmB-F	PF01189.17	gi|564290903|ref|YP_008877223.1|	-	0.021	14.4	0.0	0.035	13.7	0.0	1.3	1	0	0	1	1	1	0	16S	rRNA	methyltransferase	RsmB/F
PrmA	PF06325.13	gi|564290903|ref|YP_008877223.1|	-	0.028	13.8	0.2	0.091	12.1	0.1	1.7	2	0	0	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DUF5042	PF16445.5	gi|564290903|ref|YP_008877223.1|	-	0.06	11.7	0.0	0.086	11.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5042)
Methyltransf_18	PF12847.7	gi|564290903|ref|YP_008877223.1|	-	0.072	13.0	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Met_10	PF02475.16	gi|564290903|ref|YP_008877223.1|	-	0.11	12.2	0.0	0.16	11.7	0.0	1.3	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_23	PF13489.6	gi|564290903|ref|YP_008877223.1|	-	0.11	12.3	0.0	0.17	11.7	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|564290904|ref|YP_008877224.1|	-	3.6e-61	206.6	0.0	4e-61	206.4	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GCD14	PF08704.10	gi|564290904|ref|YP_008877224.1|	-	4.8e-06	26.4	0.0	6.1e-06	26.1	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_25	PF13649.6	gi|564290904|ref|YP_008877224.1|	-	3.8e-05	24.3	0.0	6.8e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564290904|ref|YP_008877224.1|	-	0.00032	20.5	0.0	0.00043	20.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564290904|ref|YP_008877224.1|	-	0.0029	17.2	0.0	0.0042	16.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.20	gi|564290904|ref|YP_008877224.1|	-	0.0033	16.5	0.0	0.0063	15.6	0.0	1.4	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.20	gi|564290904|ref|YP_008877224.1|	-	0.011	15.1	0.0	0.015	14.6	0.0	1.1	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DUF938	PF06080.12	gi|564290904|ref|YP_008877224.1|	-	0.033	13.9	0.0	0.046	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Fibrillarin	PF01269.17	gi|564290904|ref|YP_008877224.1|	-	0.1	11.7	0.1	0.22	10.6	0.0	1.5	2	0	0	2	2	2	0	Fibrillarin
Methyltransf_32	PF13679.6	gi|564290904|ref|YP_008877224.1|	-	0.19	11.7	0.0	0.25	11.3	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
DUF4265	PF14085.6	gi|564290905|ref|YP_008877225.1|	-	0.052	13.5	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4265)
zinc_ribbon_5	PF13719.6	gi|564290905|ref|YP_008877225.1|	-	0.13	12.1	0.2	0.23	11.3	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.6	gi|564290905|ref|YP_008877225.1|	-	0.14	12.1	2.8	1.1	9.3	3.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF1648	PF07853.11	gi|564290906|ref|YP_008877226.1|	-	6.4e-18	64.1	0.6	6.4e-18	64.1	0.6	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1648)
DUF3995	PF13160.6	gi|564290906|ref|YP_008877226.1|	-	4.8	7.6	12.0	0.24	11.7	4.7	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3995)
Peptidase_M29	PF02073.15	gi|564290907|ref|YP_008877227.1|	-	5.8e-13	48.4	0.0	4.9e-10	38.7	0.1	2.1	2	0	0	2	2	2	2	Thermophilic	metalloprotease	(M29)
Gp_dh_C	PF02800.20	gi|564290908|ref|YP_008877228.1|	-	1.6e-20	73.3	0.0	3.3e-20	72.3	0.0	1.6	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.20	gi|564290908|ref|YP_008877228.1|	-	4e-08	33.4	0.1	7.4e-08	32.6	0.1	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Gp_dh_N	PF00044.24	gi|564290908|ref|YP_008877228.1|	-	0.00011	22.5	0.0	0.00035	20.9	0.0	1.9	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564290908|ref|YP_008877228.1|	-	0.0035	16.7	0.3	0.041	13.2	0.3	2.4	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_3	PF03447.16	gi|564290908|ref|YP_008877228.1|	-	0.0039	17.8	0.0	0.021	15.5	0.0	2.1	2	0	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
Metallophos_2	PF12850.7	gi|564290909|ref|YP_008877229.1|	-	4.9e-34	117.9	0.1	5.5e-34	117.7	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564290909|ref|YP_008877229.1|	-	4e-06	27.5	5.5	7e-05	23.4	0.3	2.5	1	1	1	2	2	2	2	Calcineurin-like	phosphoesterase
DUF5603	PF18231.1	gi|564290909|ref|YP_008877229.1|	-	0.092	13.1	0.0	0.14	12.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5603)
UvrD-helicase	PF00580.21	gi|564290911|ref|YP_008877231.1|	-	3e-25	89.4	0.0	1.4e-11	44.5	0.0	2.5	2	0	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|564290911|ref|YP_008877231.1|	-	4.2e-24	85.6	0.0	9.4e-24	84.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
UvrD_C	PF13361.6	gi|564290911|ref|YP_008877231.1|	-	1.4e-17	64.1	0.1	2.5e-10	40.3	0.0	2.2	2	0	0	2	2	2	2	UvrD-like	helicase	C-terminal	domain
UvrD_C_2	PF13538.6	gi|564290911|ref|YP_008877231.1|	-	5.9e-10	38.8	0.5	0.0014	18.4	0.0	2.9	3	0	0	3	3	3	2	UvrD-like	helicase	C-terminal	domain
AAA_30	PF13604.6	gi|564290911|ref|YP_008877231.1|	-	5e-07	29.6	0.0	0.00085	19.1	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
Viral_helicase1	PF01443.18	gi|564290911|ref|YP_008877231.1|	-	2.1e-06	27.7	0.0	2.1	8.0	0.0	4.0	3	1	0	3	3	3	3	Viral	(Superfamily	1)	RNA	helicase
Herpes_ori_bp	PF02399.15	gi|564290911|ref|YP_008877231.1|	-	0.0013	16.9	0.0	0.0022	16.2	0.0	1.3	1	0	0	1	1	1	1	Origin	of	replication	binding	protein
AAA_22	PF13401.6	gi|564290911|ref|YP_008877231.1|	-	0.0026	18.0	0.0	0.34	11.2	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.6	gi|564290911|ref|YP_008877231.1|	-	0.01	15.4	3.1	0.38	10.3	0.0	2.9	3	0	0	3	3	3	0	AAA	domain
AAA_11	PF13086.6	gi|564290911|ref|YP_008877231.1|	-	0.044	13.6	0.0	0.22	11.3	0.0	2.1	3	0	0	3	3	3	0	AAA	domain
DUF2075	PF09848.9	gi|564290911|ref|YP_008877231.1|	-	0.12	11.6	0.0	1.6	7.9	0.0	2.5	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_12	PF13087.6	gi|564290911|ref|YP_008877231.1|	-	0.13	11.9	0.0	0.46	10.1	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_17	PF13207.6	gi|564290911|ref|YP_008877231.1|	-	0.8	10.1	4.6	3.8	7.9	0.4	3.5	4	1	0	4	4	4	0	AAA	domain
DUF2269	PF10027.9	gi|564290912|ref|YP_008877232.1|	-	0.032	14.3	4.2	0.038	14.0	4.2	1.1	1	0	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2269)
SafA	PF17073.5	gi|564290912|ref|YP_008877232.1|	-	0.42	10.6	2.5	1.6	8.8	0.2	2.1	2	0	0	2	2	2	0	Two-component-system	connector	protein
HTH_20	PF12840.7	gi|564290913|ref|YP_008877233.1|	-	4.3e-10	39.5	0.5	5.9e-10	39.1	0.5	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564290913|ref|YP_008877233.1|	-	1.1e-06	28.4	0.1	1.7e-06	27.8	0.1	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564290913|ref|YP_008877233.1|	-	2.5e-05	23.7	0.0	5.1e-05	22.8	0.0	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564290913|ref|YP_008877233.1|	-	6.4e-05	22.7	0.0	0.0001	22.0	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564290913|ref|YP_008877233.1|	-	0.00019	21.3	0.0	0.00028	20.8	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_AsnC-type	PF13404.6	gi|564290913|ref|YP_008877233.1|	-	0.0013	18.6	0.3	0.0029	17.4	0.2	1.8	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
FUR	PF01475.19	gi|564290913|ref|YP_008877233.1|	-	0.0018	18.4	0.0	0.0021	18.2	0.0	1.3	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_5	PF01022.20	gi|564290913|ref|YP_008877233.1|	-	0.0023	17.8	0.0	0.0042	16.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DprA_WH	PF17782.1	gi|564290913|ref|YP_008877233.1|	-	0.0023	18.0	0.2	0.0033	17.5	0.2	1.3	1	0	0	1	1	1	1	DprA	winged	helix	domain
TrmB	PF01978.19	gi|564290913|ref|YP_008877233.1|	-	0.0026	17.6	0.1	0.0048	16.8	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Plk4_PB1	PF18190.1	gi|564290913|ref|YP_008877233.1|	-	0.0038	17.4	0.0	0.0046	17.1	0.0	1.3	1	0	0	1	1	1	1	Polo-like	Kinase	4	Polo	Box	1
ArsR	PF09824.9	gi|564290913|ref|YP_008877233.1|	-	0.0043	16.7	0.0	0.0048	16.5	0.0	1.1	1	0	0	1	1	1	1	ArsR	transcriptional	regulator
HTH_28	PF13518.6	gi|564290913|ref|YP_008877233.1|	-	0.029	14.5	0.0	0.06	13.5	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564290913|ref|YP_008877233.1|	-	0.038	13.8	0.0	0.094	12.5	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_7	PF02796.15	gi|564290913|ref|YP_008877233.1|	-	0.038	14.1	0.0	0.079	13.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_29	PF13551.6	gi|564290913|ref|YP_008877233.1|	-	0.063	13.3	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
Sigma70_r4_2	PF08281.12	gi|564290913|ref|YP_008877233.1|	-	0.067	12.9	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_36	PF13730.6	gi|564290913|ref|YP_008877233.1|	-	0.21	11.6	0.0	0.33	10.9	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.14	gi|564290914|ref|YP_008877234.1|	-	8.4e-09	35.3	0.0	1.5e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DZR	PF12773.7	gi|564290915|ref|YP_008877235.1|	-	0.0061	16.5	0.6	0.0064	16.5	0.6	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564290915|ref|YP_008877235.1|	-	0.032	14.0	1.9	0.059	13.1	1.9	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|564290915|ref|YP_008877235.1|	-	0.17	11.5	3.0	1.5	8.6	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564290915|ref|YP_008877235.1|	-	0.24	11.5	3.8	0.61	10.3	0.4	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564290915|ref|YP_008877235.1|	-	0.32	11.0	3.5	1.2	9.1	3.5	1.9	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|564290915|ref|YP_008877235.1|	-	0.35	10.4	8.3	1.4	8.4	0.4	2.5	2	1	1	3	3	3	0	zinc-ribbon	domain
zf-C2H2_3	PF13878.6	gi|564290915|ref|YP_008877235.1|	-	2.2	8.1	5.7	15	5.5	0.6	2.3	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
PBP	PF01161.20	gi|564290916|ref|YP_008877236.1|	-	3.8e-15	56.4	0.0	5.2e-15	55.9	0.0	1.2	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
COX1	PF00115.20	gi|564290917|ref|YP_008877237.1|	-	1.4e-56	192.2	55.9	1.4e-56	192.2	55.9	2.1	3	0	0	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
DUF2871	PF11070.8	gi|564290917|ref|YP_008877237.1|	-	0.0046	17.2	1.0	0.0046	17.2	1.0	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF2871)
Hydrolase_4	PF12146.8	gi|564290918|ref|YP_008877238.1|	-	2.4e-11	43.3	0.1	5.6e-11	42.2	0.1	1.5	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_1	PF00561.20	gi|564290918|ref|YP_008877238.1|	-	5.3e-10	39.4	0.0	8.3e-10	38.7	0.0	1.3	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
AXE1	PF05448.12	gi|564290918|ref|YP_008877238.1|	-	2.4e-08	33.1	0.0	2.5e-05	23.1	0.0	2.1	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_6	PF12697.7	gi|564290918|ref|YP_008877238.1|	-	1.9e-06	28.7	0.2	1.9e-06	28.7	0.2	2.2	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.21	gi|564290918|ref|YP_008877238.1|	-	2.4e-06	27.2	0.1	1.1e-05	25.1	0.1	1.9	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.18	gi|564290918|ref|YP_008877238.1|	-	2.1e-05	24.2	0.1	3.4e-05	23.6	0.1	1.3	1	0	0	1	1	1	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Esterase	PF00756.20	gi|564290918|ref|YP_008877238.1|	-	0.0034	17.0	0.1	0.0095	15.6	0.0	1.7	2	0	0	2	2	2	1	Putative	esterase
PAF-AH_p_II	PF03403.13	gi|564290918|ref|YP_008877238.1|	-	0.028	13.0	0.0	4.4	5.7	0.0	2.1	2	0	0	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
BAAT_C	PF08840.11	gi|564290918|ref|YP_008877238.1|	-	0.029	14.3	0.0	0.044	13.7	0.0	1.2	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
DLH	PF01738.18	gi|564290918|ref|YP_008877238.1|	-	0.04	13.5	0.0	1.3	8.5	0.0	2.1	1	1	1	2	2	2	0	Dienelactone	hydrolase	family
tRNA-synt_His	PF13393.6	gi|564290919|ref|YP_008877239.1|	-	0.088	12.1	0.8	0.16	11.2	0.8	1.4	1	1	0	1	1	1	0	Histidyl-tRNA	synthetase
Glyoxalase	PF00903.25	gi|564290920|ref|YP_008877240.1|	-	3.7e-25	88.6	0.0	2.3e-24	86.0	0.0	2.6	1	1	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|564290920|ref|YP_008877240.1|	-	3.5e-08	33.7	0.1	0.00039	20.7	0.0	3.2	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
CTP_transf_like	PF01467.26	gi|564290921|ref|YP_008877241.1|	-	8e-08	32.6	0.7	5.7e-07	29.8	0.7	2.0	1	1	0	1	1	1	1	Cytidylyltransferase-like
FAD_syn	PF06574.12	gi|564290921|ref|YP_008877241.1|	-	0.045	13.6	0.5	0.071	13.0	0.4	1.6	2	0	0	2	2	2	0	FAD	synthetase
Lipocalin_5	PF13924.6	gi|564290921|ref|YP_008877241.1|	-	0.15	11.8	0.0	0.18	11.6	0.0	1.2	1	0	0	1	1	1	0	Lipocalin-like	domain
ABC_tran	PF00005.27	gi|564290922|ref|YP_008877242.1|	-	6.3e-29	101.2	0.0	8.6e-29	100.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564290922|ref|YP_008877242.1|	-	2.5e-14	53.8	0.0	3.4e-07	30.4	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564290922|ref|YP_008877242.1|	-	0.00022	20.9	0.0	0.00041	20.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.19	gi|564290922|ref|YP_008877242.1|	-	0.00023	20.7	0.0	0.36	10.2	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.6	gi|564290922|ref|YP_008877242.1|	-	0.0021	18.2	0.1	0.017	15.3	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.17	gi|564290922|ref|YP_008877242.1|	-	0.0023	17.7	0.1	0.16	11.7	0.0	2.5	2	1	1	3	3	3	1	IstB-like	ATP	binding	protein
AAA_30	PF13604.6	gi|564290922|ref|YP_008877242.1|	-	0.0025	17.5	0.0	0.0047	16.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.6	gi|564290922|ref|YP_008877242.1|	-	0.0033	17.6	0.1	0.0097	16.1	0.1	1.8	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.6	gi|564290922|ref|YP_008877242.1|	-	0.0045	17.4	0.7	0.011	16.2	0.7	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564290922|ref|YP_008877242.1|	-	0.0099	16.4	0.0	0.016	15.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290922|ref|YP_008877242.1|	-	0.031	14.2	0.1	0.091	12.7	0.0	1.7	2	1	0	2	2	2	0	RsgA	GTPase
AAA_25	PF13481.6	gi|564290922|ref|YP_008877242.1|	-	0.04	13.5	0.7	0.19	11.3	0.5	2.4	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|564290922|ref|YP_008877242.1|	-	0.086	13.1	0.2	0.33	11.2	0.0	2.0	1	1	0	2	2	2	0	AAA	domain
CbiQ	PF02361.16	gi|564290923|ref|YP_008877243.1|	-	4e-29	101.8	9.6	5.5e-29	101.4	9.6	1.1	1	0	0	1	1	1	1	Cobalt	transport	protein
DsrH	PF04077.12	gi|564290923|ref|YP_008877243.1|	-	0.052	13.7	0.0	0.088	12.9	0.0	1.3	1	0	0	1	1	1	0	DsrH	like	protein
PDGLE	PF13190.6	gi|564290924|ref|YP_008877244.1|	-	5.9e-10	38.9	1.4	9.3e-10	38.3	1.4	1.4	1	1	0	1	1	1	1	PDGLE	domain
Yip1	PF04893.17	gi|564290924|ref|YP_008877244.1|	-	0.0051	16.5	0.9	0.0061	16.3	0.9	1.2	1	0	0	1	1	1	1	Yip1	domain
CbiM	PF01891.16	gi|564290925|ref|YP_008877245.1|	-	6e-64	215.7	19.9	6.7e-64	215.5	19.9	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
ECF_trnsprt	PF12822.7	gi|564290925|ref|YP_008877245.1|	-	0.91	9.6	19.7	2.2	8.3	19.7	1.7	1	1	0	1	1	1	0	ECF	transporter,	substrate-specific	component
NikR_C	PF08753.11	gi|564290926|ref|YP_008877246.1|	-	1.5e-25	89.2	8.5	1.9e-25	88.8	8.5	1.2	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.21	gi|564290926|ref|YP_008877246.1|	-	2.1e-06	27.4	0.1	4.7e-06	26.3	0.1	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RNA_GG_bind	PF10258.9	gi|564290926|ref|YP_008877246.1|	-	0.047	13.7	0.1	0.071	13.2	0.1	1.2	1	0	0	1	1	1	0	PHAX	RNA-binding	domain
tRNA_NucTransf2	PF09249.11	gi|564290927|ref|YP_008877247.1|	-	1.9e-42	144.0	0.0	3.3e-42	143.3	0.0	1.4	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.23	gi|564290927|ref|YP_008877247.1|	-	5.3e-14	52.3	0.0	9.8e-14	51.4	0.0	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Hist_deacetyl	PF00850.19	gi|564290928|ref|YP_008877248.1|	-	6.5e-81	272.2	0.0	9.3e-81	271.6	0.0	1.2	1	0	0	1	1	1	1	Histone	deacetylase	domain
CBFD_NFYB_HMF	PF00808.23	gi|564290929|ref|YP_008877249.1|	-	6.2e-22	77.7	0.2	1.7e-12	47.4	0.1	2.0	2	0	0	2	2	2	2	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|564290929|ref|YP_008877249.1|	-	6e-12	46.1	0.8	1.1e-07	32.2	0.2	2.0	1	1	1	2	2	2	2	Core	histone	H2A/H2B/H3/H4
CENP-T_C	PF15511.6	gi|564290929|ref|YP_008877249.1|	-	0.0015	18.6	0.2	0.0041	17.2	0.1	1.7	2	0	0	2	2	2	1	Centromere	kinetochore	component	CENP-T	histone	fold
DUF1931	PF09123.11	gi|564290929|ref|YP_008877249.1|	-	0.013	15.6	1.2	0.067	13.3	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1931)
CENP-S	PF15630.6	gi|564290929|ref|YP_008877249.1|	-	0.029	14.8	0.5	0.052	13.9	0.5	1.4	1	0	0	1	1	1	0	CENP-S	protein
tRNA_anti-codon	PF01336.25	gi|564290930|ref|YP_008877250.1|	-	1e-29	102.3	8.9	2.5e-12	46.6	0.1	4.1	4	1	1	5	5	5	3	OB-fold	nucleic	acid	binding	domain
REPA_OB_2	PF16900.5	gi|564290930|ref|YP_008877250.1|	-	2.3e-12	46.7	1.7	5.2e-06	26.3	0.2	3.3	3	0	0	3	3	3	3	Replication	protein	A	OB	domain
CDC24_OB3	PF17244.2	gi|564290930|ref|YP_008877250.1|	-	1.6e-08	34.5	0.0	0.077	12.7	0.0	3.2	3	0	0	3	3	3	3	Cell	division	control	protein	24,	OB	domain	3
tRNA_anti_2	PF13742.6	gi|564290930|ref|YP_008877250.1|	-	0.058	13.6	0.1	14	5.9	0.0	3.6	4	0	0	4	4	4	0	OB-fold	nucleic	acid	binding	domain
DUF4131	PF13567.6	gi|564290930|ref|YP_008877250.1|	-	0.059	13.0	0.1	33	4.1	0.0	3.8	4	1	0	4	4	4	0	Domain	of	unknown	function	(DUF4131)
RMI2	PF16100.5	gi|564290930|ref|YP_008877250.1|	-	0.15	11.9	0.1	6.4	6.6	0.1	2.7	2	0	0	2	2	2	0	RecQ-mediated	genome	instability	protein	2
DUF5335	PF17269.2	gi|564290931|ref|YP_008877251.1|	-	0.15	11.9	0.1	0.44	10.4	0.0	1.7	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5335)
DUF309	PF03745.14	gi|564290932|ref|YP_008877252.1|	-	4.5e-18	64.7	2.5	8.2e-18	63.8	2.5	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
DisA_N	PF02457.16	gi|564290933|ref|YP_008877253.1|	-	5.6e-09	35.6	0.0	8.4e-09	35.1	0.0	1.3	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Epimerase	PF01370.21	gi|564290934|ref|YP_008877254.1|	-	7.4e-22	78.0	0.0	1.3e-21	77.2	0.0	1.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|564290934|ref|YP_008877254.1|	-	3.6e-13	49.2	0.0	6.8e-13	48.3	0.0	1.5	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.12	gi|564290934|ref|YP_008877254.1|	-	8.3e-11	41.5	0.0	6.4e-10	38.6	0.0	1.9	2	0	0	2	2	2	1	Male	sterility	protein
Polysacc_synt_2	PF02719.15	gi|564290934|ref|YP_008877254.1|	-	8.9e-11	41.4	0.3	1.4e-07	31.0	0.3	3.0	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
GDP_Man_Dehyd	PF16363.5	gi|564290934|ref|YP_008877254.1|	-	1.5e-10	41.0	0.0	8.8e-10	38.5	0.0	2.1	1	1	0	2	2	2	1	GDP-mannose	4,6	dehydratase
NAD_binding_10	PF13460.6	gi|564290934|ref|YP_008877254.1|	-	6.5e-09	35.9	0.0	7.6e-09	35.7	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
RmlD_sub_bind	PF04321.17	gi|564290934|ref|YP_008877254.1|	-	0.015	14.4	0.1	0.029	13.5	0.1	1.4	1	1	0	1	1	1	0	RmlD	substrate	binding	domain
NmrA	PF05368.13	gi|564290934|ref|YP_008877254.1|	-	0.016	14.7	0.1	0.032	13.8	0.1	1.5	1	1	0	1	1	1	0	NmrA-like	family
KR	PF08659.10	gi|564290934|ref|YP_008877254.1|	-	0.074	13.0	0.1	1.4	8.8	0.1	2.2	1	1	0	1	1	1	0	KR	domain
DHNA	PF04038.12	gi|564290935|ref|YP_008877255.1|	-	1.7e-39	134.6	0.0	1.9e-39	134.5	0.0	1.0	1	0	0	1	1	1	1	Dihydroneopterin	aldolase
SbmA_BacA	PF05992.12	gi|564290936|ref|YP_008877256.1|	-	0.0059	16.1	5.9	0.0095	15.4	5.9	1.3	1	0	0	1	1	1	1	SbmA/BacA-like	family
Phe_tRNA-synt_N	PF02912.18	gi|564290937|ref|YP_008877257.1|	-	0.015	15.2	0.0	0.046	13.7	0.0	1.8	1	0	0	1	1	1	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
Laminin_II	PF06009.12	gi|564290937|ref|YP_008877257.1|	-	0.044	13.8	0.3	0.25	11.4	0.0	2.0	1	1	1	2	2	2	0	Laminin	Domain	II
TPR_MLP1_2	PF07926.12	gi|564290937|ref|YP_008877257.1|	-	0.094	12.8	0.2	3.2	7.8	0.0	2.2	1	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
DUF3470	PF11953.8	gi|564290937|ref|YP_008877257.1|	-	0.44	10.6	5.2	8.8	6.4	0.3	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3470)
DUF4399	PF14347.6	gi|564290938|ref|YP_008877258.1|	-	2.4e-38	130.4	9.6	7.5e-24	83.9	1.9	2.4	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4399)
Phage_holin_2_3	PF16080.5	gi|564290939|ref|YP_008877259.1|	-	1.3	8.9	4.5	2	8.3	0.2	2.8	2	1	0	2	2	2	0	Bacteriophage	holin	family	HP1
COX2	PF00116.20	gi|564290940|ref|YP_008877260.1|	-	7.6e-19	67.8	0.0	1.5e-18	66.8	0.0	1.5	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.6	gi|564290940|ref|YP_008877260.1|	-	0.00046	20.3	0.0	0.00072	19.6	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
COX14	PF14880.6	gi|564290940|ref|YP_008877260.1|	-	0.0091	15.8	1.1	0.062	13.2	0.9	2.2	2	0	0	2	2	2	1	Cytochrome	oxidase	c	assembly
COX1	PF00115.20	gi|564290941|ref|YP_008877261.1|	-	3.3e-123	411.8	67.0	3.3e-123	411.8	67.0	3.0	2	1	1	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.18	gi|564290941|ref|YP_008877261.1|	-	3.7e-15	56.5	15.5	3.7e-15	56.5	15.5	2.9	3	0	0	3	3	3	1	Cytochrome	c	oxidase	subunit	III
Spore_YhaL	PF14147.6	gi|564290941|ref|YP_008877261.1|	-	0.5	10.1	2.5	0.58	9.9	0.0	2.5	3	0	0	3	3	3	0	Sporulation	protein	YhaL
COX4_pro	PF03626.14	gi|564290942|ref|YP_008877262.1|	-	2e-09	37.7	8.9	3.9e-09	36.8	8.9	1.4	1	1	0	1	1	1	1	Prokaryotic	Cytochrome	C	oxidase	subunit	IV
2Fe-2S_thioredx	PF01257.19	gi|564290942|ref|YP_008877262.1|	-	0.11	12.3	0.1	0.12	12.2	0.1	1.1	1	0	0	1	1	1	0	Thioredoxin-like	[2Fe-2S]	ferredoxin
LrgA	PF03788.14	gi|564290942|ref|YP_008877262.1|	-	0.2	11.6	4.7	0.93	9.5	4.7	1.8	1	1	0	1	1	1	0	LrgA	family
DUF3487	PF11990.8	gi|564290943|ref|YP_008877263.1|	-	8.3	6.3	9.0	0.4	10.6	1.8	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3487)
DUF1129	PF06570.11	gi|564291390|ref|YP_008877264.1|	-	0.0039	16.7	0.4	0.0046	16.5	0.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1129)
TatC	PF00902.18	gi|564291390|ref|YP_008877264.1|	-	0.031	14.1	9.2	0.019	14.8	5.5	2.5	1	1	1	2	2	2	0	Sec-independent	protein	translocase	protein	(TatC)
IRK	PF01007.20	gi|564291390|ref|YP_008877264.1|	-	0.16	11.8	0.5	1.2	9.0	0.0	2.0	2	0	0	2	2	2	0	Inward	rectifier	potassium	channel	transmembrane	domain
ABC_membrane	PF00664.23	gi|564290944|ref|YP_008877265.1|	-	8.5e-41	140.4	0.4	1.1e-40	140.0	0.4	1.2	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
ABC_tran	PF00005.27	gi|564290944|ref|YP_008877265.1|	-	1.4e-37	129.3	0.1	3.4e-37	128.0	0.0	1.7	2	0	0	2	2	1	1	ABC	transporter
AAA_22	PF13401.6	gi|564290944|ref|YP_008877265.1|	-	0.00017	21.8	0.1	0.0031	17.8	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|564290944|ref|YP_008877265.1|	-	0.00024	21.5	0.2	0.00052	20.4	0.2	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|564290944|ref|YP_008877265.1|	-	0.00052	19.5	0.1	0.026	13.9	0.0	2.2	1	1	1	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|564290944|ref|YP_008877265.1|	-	0.00075	19.4	0.0	0.0019	18.2	0.0	1.6	1	0	0	1	1	1	1	RsgA	GTPase
AAA_24	PF13479.6	gi|564290944|ref|YP_008877265.1|	-	0.0017	18.1	0.0	0.003	17.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_21	PF13304.6	gi|564290944|ref|YP_008877265.1|	-	0.0026	17.6	0.0	0.0091	15.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
MMR_HSR1	PF01926.23	gi|564290944|ref|YP_008877265.1|	-	0.0074	16.4	0.1	0.15	12.1	0.0	2.7	3	0	0	3	3	3	1	50S	ribosome-binding	GTPase
AAA_29	PF13555.6	gi|564290944|ref|YP_008877265.1|	-	0.013	15.3	0.1	0.038	13.7	0.1	1.8	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|564290944|ref|YP_008877265.1|	-	0.016	15.4	0.0	0.055	13.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.6	gi|564290944|ref|YP_008877265.1|	-	0.016	14.9	0.7	0.052	13.3	0.7	1.8	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|564290944|ref|YP_008877265.1|	-	0.028	13.7	0.0	0.056	12.7	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_5	PF07728.14	gi|564290944|ref|YP_008877265.1|	-	0.031	14.3	0.4	0.25	11.3	0.2	2.6	2	1	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.6	gi|564290944|ref|YP_008877265.1|	-	0.038	14.5	0.0	0.07	13.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564290944|ref|YP_008877265.1|	-	0.053	14.1	0.0	0.13	12.8	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Guanylate_kin	PF00625.21	gi|564290944|ref|YP_008877265.1|	-	0.12	12.0	0.1	0.51	10.0	0.1	1.9	1	1	0	1	1	1	0	Guanylate	kinase
DUF3080	PF11279.8	gi|564290944|ref|YP_008877265.1|	-	0.13	11.4	0.0	0.21	10.8	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3080)
AAA_7	PF12775.7	gi|564290944|ref|YP_008877265.1|	-	0.15	11.6	0.0	0.3	10.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|564290944|ref|YP_008877265.1|	-	0.16	12.4	0.1	1.5	9.2	0.1	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF192	PF02643.15	gi|564290945|ref|YP_008877266.1|	-	2.2e-32	111.1	0.0	3.1e-32	110.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
DUF1905	PF08922.11	gi|564290945|ref|YP_008877266.1|	-	0.042	13.9	0.0	0.092	12.8	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
Zn-ribbon_8	PF09723.10	gi|564290946|ref|YP_008877267.1|	-	0.00014	21.9	3.9	0.013	15.6	0.8	2.1	2	0	0	2	2	2	2	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564290946|ref|YP_008877267.1|	-	0.00074	19.4	0.6	0.00085	19.3	0.6	1.0	1	0	0	1	1	1	1	zinc-ribbons
OrfB_Zn_ribbon	PF07282.11	gi|564290946|ref|YP_008877267.1|	-	0.00094	19.1	1.5	0.0012	18.8	1.5	1.0	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf_UBZ	PF18439.1	gi|564290946|ref|YP_008877267.1|	-	0.0024	17.4	2.0	0.062	12.9	0.2	2.0	1	1	1	2	2	2	1	Ubiquitin-Binding	Zinc	Finger
Zn_Tnp_IS1595	PF12760.7	gi|564290946|ref|YP_008877267.1|	-	0.0036	17.2	0.3	0.0046	16.9	0.3	1.1	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|564290946|ref|YP_008877267.1|	-	0.005	17.6	1.4	0.21	12.5	0.1	2.1	2	0	0	2	2	2	1	C2H2-type	zinc	finger
DZR	PF12773.7	gi|564290946|ref|YP_008877267.1|	-	0.0051	16.8	0.4	0.0059	16.6	0.4	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-C2H2	PF00096.26	gi|564290946|ref|YP_008877267.1|	-	0.0072	16.7	1.6	0.021	15.3	0.1	2.0	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
C1_2	PF03107.16	gi|564290946|ref|YP_008877267.1|	-	0.024	15.0	1.0	0.027	14.8	1.0	1.1	1	0	0	1	1	1	0	C1	domain
zf-Mss51	PF13824.6	gi|564290946|ref|YP_008877267.1|	-	0.028	14.5	2.0	0.032	14.3	2.0	1.1	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TF_Zn_Ribbon	PF08271.12	gi|564290946|ref|YP_008877267.1|	-	0.031	13.8	3.9	0.04	13.4	3.9	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
C1_1	PF00130.22	gi|564290946|ref|YP_008877267.1|	-	0.036	14.0	0.2	0.036	13.9	0.2	1.1	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-H2C2_2	PF13465.6	gi|564290946|ref|YP_008877267.1|	-	0.049	14.1	4.8	0.089	13.3	0.2	2.1	1	1	1	2	2	2	0	Zinc-finger	double	domain
zf-C2H2_6	PF13912.6	gi|564290946|ref|YP_008877267.1|	-	0.23	11.5	0.1	0.23	11.5	0.1	1.6	2	0	0	2	2	2	0	C2H2-type	zinc	finger
TFIIS_C	PF01096.18	gi|564290946|ref|YP_008877267.1|	-	0.4	10.6	3.6	1.7	8.5	0.2	2.1	1	1	1	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Rubredoxin_2	PF18073.1	gi|564290946|ref|YP_008877267.1|	-	0.53	10.1	4.7	0.9	9.3	0.2	2.1	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
HypA	PF01155.19	gi|564290946|ref|YP_008877267.1|	-	0.62	10.1	2.6	1.1	9.3	2.7	1.4	1	1	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
Anti-TRAP	PF15777.5	gi|564290946|ref|YP_008877267.1|	-	1.8	8.6	6.1	1	9.4	1.1	2.0	1	1	1	2	2	2	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
SecD-TM1	PF13721.6	gi|564290947|ref|YP_008877268.1|	-	0.012	16.1	0.1	0.018	15.5	0.1	1.3	1	0	0	1	1	1	0	SecD	export	protein	N-terminal	TM	region
ACT	PF01842.25	gi|564290947|ref|YP_008877268.1|	-	0.035	13.9	0.1	0.12	12.1	0.1	2.0	1	0	0	1	1	1	0	ACT	domain
TetR_C_24	PF17932.1	gi|564290947|ref|YP_008877268.1|	-	0.13	12.6	1.5	1.1	9.6	0.3	2.3	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
CagA	PF03507.13	gi|564290947|ref|YP_008877268.1|	-	0.15	12.0	0.1	0.24	11.3	0.1	1.2	1	0	0	1	1	1	0	CagA	exotoxin
PRC	PF05239.16	gi|564290948|ref|YP_008877269.1|	-	0.071	13.2	0.3	0.16	12.1	0.1	1.8	1	1	1	2	2	2	0	PRC-barrel	domain
Methyltransf_11	PF08241.12	gi|564291391|ref|YP_008877270.1|	-	2.4e-11	44.1	0.0	4.9e-11	43.1	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564291391|ref|YP_008877270.1|	-	8.2e-09	36.1	0.0	1.9e-08	34.9	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564291391|ref|YP_008877270.1|	-	0.00048	19.5	0.0	0.00067	19.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.6	gi|564291391|ref|YP_008877270.1|	-	0.0027	17.5	0.0	0.0034	17.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564291391|ref|YP_008877270.1|	-	0.0049	17.6	0.0	0.0083	16.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
HSP20	PF00011.21	gi|564290949|ref|YP_008877271.1|	-	1.4e-17	63.7	0.1	1.8e-17	63.3	0.1	1.2	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ArsA_HSP20	PF17886.1	gi|564290949|ref|YP_008877271.1|	-	2.8e-09	36.4	0.0	4.4e-09	35.8	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
FAD-oxidase_C	PF02913.19	gi|564290950|ref|YP_008877272.1|	-	3.7e-62	210.2	0.1	1e-61	208.8	0.1	1.7	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|564290950|ref|YP_008877272.1|	-	5.6e-40	136.3	0.0	1.2e-39	135.3	0.0	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|564290950|ref|YP_008877272.1|	-	2.5e-09	37.6	4.8	5e-09	36.6	4.8	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|564290950|ref|YP_008877272.1|	-	1.9e-08	34.6	5.3	4.2e-08	33.5	5.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|564290950|ref|YP_008877272.1|	-	8.9e-07	29.0	0.0	0.00022	21.4	0.0	2.6	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|564290950|ref|YP_008877272.1|	-	0.00019	21.5	3.4	0.0086	16.2	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|564290950|ref|YP_008877272.1|	-	0.00048	19.6	0.0	0.00077	18.9	0.0	1.2	1	0	0	1	1	1	1	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_9	PF13187.6	gi|564290950|ref|YP_008877272.1|	-	0.00051	20.1	1.7	0.028	14.6	0.4	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564290950|ref|YP_008877272.1|	-	0.012	15.7	1.9	0.17	12.1	0.4	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564290950|ref|YP_008877272.1|	-	0.26	11.9	7.6	1.7	9.3	7.8	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564290950|ref|YP_008877272.1|	-	0.53	10.2	14.5	0.12	12.3	4.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564290950|ref|YP_008877272.1|	-	7.8	6.8	12.1	0.68	10.1	3.3	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
RseC_MucC	PF04246.12	gi|564290951|ref|YP_008877273.1|	-	1.5	8.7	5.2	1.8	8.5	0.9	2.4	2	0	0	2	2	2	0	Positive	regulator	of	sigma(E),	RseC/MucC
HisKA_4TM	PF16926.5	gi|564290952|ref|YP_008877274.1|	-	7e-82	272.8	7.3	1.2e-81	272.1	7.3	1.4	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|564290952|ref|YP_008877274.1|	-	4.2e-10	40.1	0.0	1e-09	38.9	0.0	1.7	1	1	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564290952|ref|YP_008877274.1|	-	0.0056	16.6	0.3	0.014	15.4	0.3	1.8	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
adh_short	PF00106.25	gi|564290952|ref|YP_008877274.1|	-	0.06	12.8	0.2	0.15	11.5	0.1	1.6	1	1	1	2	2	2	0	short	chain	dehydrogenase
CSD	PF00313.22	gi|564290953|ref|YP_008877275.1|	-	3.2e-20	71.7	0.1	3.5e-20	71.6	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
OB_RNB	PF08206.11	gi|564290953|ref|YP_008877275.1|	-	0.074	12.7	2.5	0.096	12.4	2.5	1.3	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
S1-like	PF14444.6	gi|564290953|ref|YP_008877275.1|	-	0.22	11.5	1.9	0.48	10.4	1.9	1.7	1	1	0	1	1	1	0	S1-like
CSD	PF00313.22	gi|564290954|ref|YP_008877276.1|	-	1.2e-20	73.1	0.1	1.3e-20	73.0	0.1	1.0	1	0	0	1	1	1	1	'Cold-shock'	DNA-binding	domain
Rho_RNA_bind	PF07497.12	gi|564290954|ref|YP_008877276.1|	-	0.0088	15.9	0.0	0.0099	15.7	0.0	1.1	1	0	0	1	1	1	1	Rho	termination	factor,	RNA-binding	domain
S1-like	PF14444.6	gi|564290954|ref|YP_008877276.1|	-	0.016	15.1	1.0	0.024	14.5	1.0	1.4	1	1	0	1	1	1	0	S1-like
OB_RNB	PF08206.11	gi|564290954|ref|YP_008877276.1|	-	0.018	14.7	2.5	0.028	14.1	2.5	1.4	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
CusF_Ec	PF11604.8	gi|564290954|ref|YP_008877276.1|	-	0.047	13.7	0.0	0.062	13.3	0.0	1.3	1	0	0	1	1	1	0	Copper	binding	periplasmic	protein	CusF
DUF429	PF04250.13	gi|564290955|ref|YP_008877277.1|	-	2.5e-45	154.9	4.1	2.8e-45	154.7	4.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
Lar_restr_allev	PF14354.6	gi|564290957|ref|YP_008877279.1|	-	0.0027	18.0	0.5	0.0036	17.7	0.5	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zf-HYPF	PF07503.12	gi|564290957|ref|YP_008877279.1|	-	0.0031	17.2	2.7	0.0085	15.9	0.4	2.1	2	0	0	2	2	2	1	HypF	finger
Zn-ribbon_8	PF09723.10	gi|564290957|ref|YP_008877279.1|	-	0.0054	16.8	2.6	0.015	15.4	2.6	1.7	1	1	0	1	1	1	1	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|564290957|ref|YP_008877279.1|	-	0.008	15.5	2.7	0.66	9.5	1.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.7	gi|564290957|ref|YP_008877279.1|	-	0.021	14.9	2.4	3	7.9	0.3	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
DUF2197	PF09963.9	gi|564290957|ref|YP_008877279.1|	-	0.042	14.1	0.5	0.058	13.6	0.5	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2197)
HypA	PF01155.19	gi|564290957|ref|YP_008877279.1|	-	0.061	13.4	0.6	0.069	13.2	0.6	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
CpXC	PF14353.6	gi|564290957|ref|YP_008877279.1|	-	0.09	12.8	2.1	1.7	8.7	2.1	2.0	1	1	0	1	1	1	0	CpXC	protein
zf_UBZ	PF18439.1	gi|564290957|ref|YP_008877279.1|	-	0.12	12.0	3.2	3.2	7.4	0.1	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zf-C2H2	PF00096.26	gi|564290957|ref|YP_008877279.1|	-	0.4	11.2	2.4	18	6.0	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.6	gi|564290957|ref|YP_008877279.1|	-	0.45	10.6	2.8	10	6.2	0.4	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
NTP_transferase	PF00483.23	gi|564290958|ref|YP_008877280.1|	-	1.5e-37	129.5	0.0	1.9e-37	129.2	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564290958|ref|YP_008877280.1|	-	6.9e-16	59.0	0.3	8.3e-16	58.7	0.3	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|564290958|ref|YP_008877280.1|	-	7.3e-07	29.1	0.1	1.1e-06	28.5	0.1	1.8	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|564290958|ref|YP_008877280.1|	-	0.11	12.3	0.1	0.14	11.9	0.1	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
DUF4864	PF16156.5	gi|564290959|ref|YP_008877281.1|	-	1.8e-10	41.4	0.0	2.9e-10	40.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4864)
BPD_transp_1	PF00528.22	gi|564290960|ref|YP_008877282.1|	-	3.1e-13	49.8	18.1	3.1e-13	49.8	18.1	2.4	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564290961|ref|YP_008877283.1|	-	4.4e-14	52.6	16.6	4.4e-14	52.6	16.6	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.6	gi|564290962|ref|YP_008877284.1|	-	1.7e-30	106.8	9.1	2.4e-30	106.3	9.1	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|564290962|ref|YP_008877284.1|	-	3.3e-17	63.4	12.7	6.6e-17	62.4	12.4	1.6	1	1	1	2	2	2	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564290962|ref|YP_008877284.1|	-	0.0023	17.7	0.4	0.0063	16.3	0.4	1.8	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Vta1_C	PF18097.1	gi|564290962|ref|YP_008877284.1|	-	0.67	9.7	4.7	8.4	6.2	0.2	2.6	2	0	0	2	2	2	0	Vta1	C-terminal	domain
Alpha-amylase	PF00128.24	gi|564290963|ref|YP_008877285.1|	-	3e-47	161.8	0.0	4.5e-47	161.3	0.0	1.1	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
DUF3459	PF11941.8	gi|564290963|ref|YP_008877285.1|	-	1.1e-06	28.8	0.0	3.8e-06	27.1	0.0	2.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3459)
Alpha-amylase_C	PF02806.18	gi|564290963|ref|YP_008877285.1|	-	0.00012	22.5	0.1	0.0033	17.8	0.0	3.0	3	0	0	3	3	3	1	Alpha	amylase,	C-terminal	all-beta	domain
AMPK1_CBM	PF16561.5	gi|564290963|ref|YP_008877285.1|	-	0.00072	19.7	0.0	0.0018	18.5	0.0	1.6	1	0	0	1	1	1	1	Glycogen	recognition	site	of	AMP-activated	protein	kinase
Malt_amylase_C	PF16657.5	gi|564290963|ref|YP_008877285.1|	-	0.0076	16.4	0.0	0.023	14.8	0.0	1.8	1	0	0	1	1	1	1	Maltogenic	Amylase,	C-terminal	domain
hDGE_amylase	PF14701.6	gi|564290963|ref|YP_008877285.1|	-	0.21	10.6	0.0	0.33	10.0	0.0	1.1	1	0	0	1	1	1	0	Glycogen	debranching	enzyme,	glucanotransferase	domain
ABC_tran	PF00005.27	gi|564290964|ref|YP_008877286.1|	-	6.7e-33	114.1	0.0	1e-32	113.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|564290964|ref|YP_008877286.1|	-	8.9e-12	45.0	0.4	2.3e-10	40.5	0.2	3.1	2	1	0	2	2	2	1	TOBE	domain
OB_MalK	PF17912.1	gi|564290964|ref|YP_008877286.1|	-	1.6e-09	38.4	0.0	1.8e-08	35.1	0.0	2.8	2	0	0	2	2	2	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|564290964|ref|YP_008877286.1|	-	9.4e-08	32.2	0.0	0.0008	19.3	0.0	2.4	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|564290964|ref|YP_008877286.1|	-	1.1e-07	32.0	0.0	5.9e-07	29.7	0.0	2.3	2	1	0	2	2	1	1	TOBE	domain
SMC_N	PF02463.19	gi|564290964|ref|YP_008877286.1|	-	0.00018	21.0	0.1	0.00081	18.9	0.1	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564290964|ref|YP_008877286.1|	-	0.0029	18.0	0.1	0.0046	17.3	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564290964|ref|YP_008877286.1|	-	0.0051	17.1	0.2	0.0079	16.5	0.2	1.5	1	1	0	1	1	1	1	AAA	domain
Rad17	PF03215.15	gi|564290964|ref|YP_008877286.1|	-	0.018	15.0	0.0	0.028	14.3	0.0	1.2	1	0	0	1	1	1	0	Rad17	P-loop	domain
AAA_29	PF13555.6	gi|564290964|ref|YP_008877286.1|	-	0.032	14.0	0.1	0.089	12.6	0.0	1.7	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564290964|ref|YP_008877286.1|	-	0.052	13.5	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
TAF	PF02969.17	gi|564290964|ref|YP_008877286.1|	-	0.066	13.4	0.0	0.21	11.8	0.0	1.8	1	0	0	1	1	1	0	TATA	box	binding	protein	associated	factor	(TAF)
CysA_C_terminal	PF17850.1	gi|564290964|ref|YP_008877286.1|	-	0.067	13.8	0.1	2.9	8.5	0.0	2.9	2	0	0	2	2	2	0	CysA	C-terminal	regulatory	domain
AAA	PF00004.29	gi|564290964|ref|YP_008877286.1|	-	0.07	13.5	0.0	0.24	11.8	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
G-alpha	PF00503.20	gi|564290964|ref|YP_008877286.1|	-	0.071	12.2	0.0	0.09	11.9	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_18	PF13238.6	gi|564290964|ref|YP_008877286.1|	-	0.11	13.1	0.0	0.23	12.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|564290964|ref|YP_008877286.1|	-	0.13	12.5	0.1	0.36	11.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|564290964|ref|YP_008877286.1|	-	0.17	12.3	0.0	1.2	9.6	0.0	2.2	2	0	0	2	2	2	0	RNA	helicase
AAA_15	PF13175.6	gi|564290964|ref|YP_008877286.1|	-	0.2	11.3	0.0	0.28	10.8	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
Regulator_TrmB	PF11495.8	gi|564290966|ref|YP_008877288.1|	-	1.1e-70	237.4	0.1	1.5e-70	237.0	0.1	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|564290966|ref|YP_008877288.1|	-	2e-14	53.2	0.0	3.5e-14	52.4	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564290966|ref|YP_008877288.1|	-	0.00033	20.5	0.0	0.001	18.9	0.0	1.8	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564290966|ref|YP_008877288.1|	-	0.013	15.4	0.0	0.028	14.3	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Rrf2	PF02082.20	gi|564290966|ref|YP_008877288.1|	-	0.02	15.2	0.0	0.051	13.9	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|564290966|ref|YP_008877288.1|	-	0.023	14.5	0.0	0.076	12.8	0.0	1.9	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_29	PF13551.6	gi|564290966|ref|YP_008877288.1|	-	0.056	13.5	0.0	0.29	11.2	0.0	2.2	2	1	0	2	2	2	0	Winged	helix-turn	helix
PLDc_2	PF13091.6	gi|564290966|ref|YP_008877288.1|	-	0.058	13.3	0.0	0.075	12.9	0.0	1.4	1	0	0	1	1	1	0	PLD-like	domain
HTH_24	PF13412.6	gi|564290966|ref|YP_008877288.1|	-	0.071	12.7	0.0	0.15	11.7	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.6	gi|564290966|ref|YP_008877288.1|	-	0.12	12.3	0.0	0.44	10.5	0.0	1.9	1	1	1	2	2	2	0	Helix-turn-helix	domain
Rossmann-like	PF10727.9	gi|564290966|ref|YP_008877288.1|	-	0.13	12.2	0.4	0.22	11.4	0.0	1.6	2	0	0	2	2	2	0	Rossmann-like	domain
HTH_11	PF08279.12	gi|564290966|ref|YP_008877288.1|	-	0.18	11.8	0.3	0.8	9.7	0.0	2.1	2	0	0	2	2	2	0	HTH	domain
Pilin_N	PF07790.11	gi|564290967|ref|YP_008877289.1|	-	8.2e-20	71.5	0.9	1.5e-19	70.7	0.4	1.7	2	0	0	2	2	2	1	Archaeal	Type	IV	pilin,	N-terminal
GST_N_2	PF13409.6	gi|564291392|ref|YP_008877290.1|	-	7.4e-22	77.4	0.2	3.4e-20	72.1	0.0	2.3	2	0	0	2	2	2	1	Glutathione	S-transferase,	N-terminal	domain
GST_C_2	PF13410.6	gi|564291392|ref|YP_008877290.1|	-	5.8e-13	48.7	0.3	1.1e-12	47.8	0.3	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C	PF00043.25	gi|564291392|ref|YP_008877290.1|	-	1.3e-08	35.0	0.0	3.4e-08	33.6	0.0	1.7	2	0	0	2	2	2	1	Glutathione	S-transferase,	C-terminal	domain
GST_N_3	PF13417.6	gi|564291392|ref|YP_008877290.1|	-	7.8e-06	26.2	0.0	0.11	12.9	0.0	2.5	2	0	0	2	2	2	2	Glutathione	S-transferase,	N-terminal	domain
GST_C_3	PF14497.6	gi|564291392|ref|YP_008877290.1|	-	9.1e-06	25.8	0.0	1.7e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
GST_C_6	PF17171.4	gi|564291392|ref|YP_008877290.1|	-	0.00017	21.3	0.2	0.00031	20.5	0.2	1.4	1	0	0	1	1	1	1	Glutathione	S-transferase,	C-terminal	domain
SANT_DAMP1_like	PF16282.5	gi|564291392|ref|YP_008877290.1|	-	0.036	14.3	0.1	0.11	12.8	0.1	1.8	1	0	0	1	1	1	0	SANT/Myb-like	domain	of	DAMP1
Ribosomal_L16	PF00252.18	gi|564290968|ref|YP_008877291.1|	-	7.2e-30	103.7	0.3	8.3e-30	103.5	0.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
GcnA_N	PF18229.1	gi|564290968|ref|YP_008877291.1|	-	0.015	15.3	0.0	0.034	14.2	0.0	1.7	1	0	0	1	1	1	0	N-acetyl-beta-D-glucosaminidase	N-terminal	domain
Usp	PF00582.26	gi|564290970|ref|YP_008877293.1|	-	1.4e-36	126.1	1.3	1.8e-36	125.7	1.3	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
SRP54	PF00448.22	gi|564290970|ref|YP_008877293.1|	-	0.0078	15.9	0.6	0.21	11.2	0.3	2.0	1	1	1	2	2	2	2	SRP54-type	protein,	GTPase	domain
RimK	PF08443.11	gi|564290971|ref|YP_008877294.1|	-	6.2e-23	81.4	0.0	8.3e-23	81.0	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|564290971|ref|YP_008877294.1|	-	1.5e-10	40.8	0.0	2.1e-10	40.3	0.0	1.1	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|564290971|ref|YP_008877294.1|	-	6.6e-08	32.8	0.0	9.6e-08	32.2	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|564290971|ref|YP_008877294.1|	-	1.5e-07	30.9	0.0	0.00091	18.6	0.0	2.2	2	0	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
ATP-grasp	PF02222.22	gi|564290971|ref|YP_008877294.1|	-	0.0024	17.5	0.0	0.0037	16.9	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.13	gi|564290971|ref|YP_008877294.1|	-	0.003	17.1	0.0	0.012	15.2	0.0	1.8	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
TTL	PF03133.15	gi|564290971|ref|YP_008877294.1|	-	0.0034	16.6	0.0	0.042	13.0	0.0	2.0	2	0	0	2	2	2	1	Tubulin-tyrosine	ligase	family
R2K_3	PF14243.6	gi|564290971|ref|YP_008877294.1|	-	0.012	15.6	0.6	0.016	15.2	0.6	1.3	1	0	0	1	1	1	0	ATP-grasp	domain,	R2K	clade	family	3
CPSase_L_D2	PF02786.17	gi|564290971|ref|YP_008877294.1|	-	0.064	12.7	0.0	0.08	12.4	0.0	1.3	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
R2K_2	PF18299.1	gi|564290971|ref|YP_008877294.1|	-	0.075	12.9	0.1	0.15	12.0	0.1	1.5	1	1	0	1	1	1	0	ATP-grasp	domain,	R2K	clade	family	2
ArsA_HSP20	PF17886.1	gi|564290972|ref|YP_008877295.1|	-	1.1e-14	53.8	0.0	1.6e-14	53.2	0.0	1.3	1	0	0	1	1	1	1	HSP20-like	domain	found	in	ArsA
HSP20	PF00011.21	gi|564290972|ref|YP_008877295.1|	-	8.5e-11	41.9	0.1	2.4e-09	37.3	0.1	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
GvpH	PF05455.11	gi|564290972|ref|YP_008877295.1|	-	0.00013	22.1	2.5	0.00017	21.7	2.5	1.2	1	0	0	1	1	1	1	GvpH
PIH1_CS	PF18201.1	gi|564290972|ref|YP_008877295.1|	-	0.046	14.1	0.0	0.063	13.7	0.0	1.2	1	0	0	1	1	1	0	PIH1	CS-like	domain
Frataxin_Cyay	PF01491.16	gi|564290972|ref|YP_008877295.1|	-	0.19	11.8	0.0	5.3	7.2	0.0	2.5	1	1	1	2	2	2	0	Frataxin-like	domain
Gp_dh_C	PF02800.20	gi|564290973|ref|YP_008877296.1|	-	5.6e-59	198.3	0.0	7.8e-59	197.8	0.0	1.2	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.24	gi|564290973|ref|YP_008877296.1|	-	2.9e-28	98.2	0.1	5.1e-28	97.4	0.1	1.4	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|564290973|ref|YP_008877296.1|	-	0.013	15.6	0.1	0.038	14.1	0.1	1.9	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
PGK	PF00162.19	gi|564290974|ref|YP_008877297.1|	-	7e-101	337.9	0.1	8.2e-101	337.7	0.1	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
MT0933_antitox	PF14013.6	gi|564290974|ref|YP_008877297.1|	-	0.1	12.9	0.7	3.5	8.0	0.1	3.1	2	1	0	2	2	2	0	MT0933-like	antitoxin	protein
Lum_binding	PF00677.17	gi|564290976|ref|YP_008877299.1|	-	1.1e-46	156.7	0.2	3.2e-24	84.7	0.1	2.0	2	0	0	2	2	2	2	Lumazine	binding	domain
PrsW-protease	PF13367.6	gi|564290977|ref|YP_008877300.1|	-	2.9e-46	157.4	14.1	2.9e-46	157.4	14.1	1.5	2	0	0	2	2	2	1	PrsW	family	intramembrane	metalloprotease
DUF2208	PF09973.9	gi|564290977|ref|YP_008877300.1|	-	0.12	11.9	1.0	0.29	10.7	1.0	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2208)
SNO	PF01174.19	gi|564290978|ref|YP_008877301.1|	-	6.3e-52	176.2	0.0	6.9e-52	176.0	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.14	gi|564290978|ref|YP_008877301.1|	-	1.6e-09	37.6	0.0	2.8e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.17	gi|564290978|ref|YP_008877301.1|	-	0.00064	19.4	0.0	0.00081	19.1	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.28	gi|564290978|ref|YP_008877301.1|	-	0.00071	19.4	0.0	0.0014	18.5	0.0	1.4	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DJ-1_PfpI	PF01965.24	gi|564290978|ref|YP_008877301.1|	-	0.00079	19.3	0.0	0.0012	18.6	0.0	1.3	1	0	0	1	1	1	1	DJ-1/PfpI	family
BPL_N	PF09825.9	gi|564290978|ref|YP_008877301.1|	-	0.087	11.9	0.0	0.43	9.6	0.0	1.9	2	0	0	2	2	2	0	Biotin-protein	ligase,	N	terminal
ThiJ_like	PF17124.5	gi|564290978|ref|YP_008877301.1|	-	0.12	12.0	0.0	0.15	11.7	0.0	1.2	1	0	0	1	1	1	0	ThiJ/PfpI	family-like
PRF	PF06875.11	gi|564290978|ref|YP_008877301.1|	-	0.2	11.0	0.0	0.28	10.6	0.0	1.1	1	0	0	1	1	1	0	Plethodontid	receptivity	factor	PRF
PRA-PH	PF01503.17	gi|564290979|ref|YP_008877302.1|	-	3e-17	62.8	2.0	3.3e-17	62.7	2.0	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.17	gi|564290979|ref|YP_008877302.1|	-	0.00029	20.9	2.2	0.00029	20.9	2.2	1.6	2	0	0	2	2	2	1	MazG	nucleotide	pyrophosphohydrolase	domain
Response_reg	PF00072.24	gi|564290980|ref|YP_008877303.1|	-	3.4e-22	78.7	0.9	1.5e-21	76.6	0.0	2.6	2	1	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|564290980|ref|YP_008877303.1|	-	4.8e-17	62.5	0.5	3.6e-16	59.7	0.1	2.3	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564290980|ref|YP_008877303.1|	-	4e-12	46.0	0.4	4e-12	46.0	0.4	4.1	5	0	0	5	5	5	1	His	Kinase	A	(phospho-acceptor)	domain
GAF_2	PF13185.6	gi|564290980|ref|YP_008877303.1|	-	1.2e-09	38.6	2.9	2.5e-09	37.6	1.7	2.2	2	0	0	2	2	2	1	GAF	domain
PAS	PF00989.25	gi|564290980|ref|YP_008877303.1|	-	6.2e-08	32.6	0.0	2.4e-07	30.7	0.0	2.1	2	0	0	2	2	2	1	PAS	fold
PAS_9	PF13426.7	gi|564290980|ref|YP_008877303.1|	-	9.9e-07	29.0	0.0	9.5e-06	25.8	0.0	2.7	3	1	1	4	4	3	1	PAS	domain
PAS_8	PF13188.7	gi|564290980|ref|YP_008877303.1|	-	4.3e-06	26.6	0.0	3.4e-05	23.8	0.0	2.6	3	0	0	3	3	3	1	PAS	domain
OKR_DC_1_N	PF03709.15	gi|564290980|ref|YP_008877303.1|	-	6.9e-06	26.3	0.6	6.4e-05	23.2	0.0	2.6	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HATPase_c_3	PF13589.6	gi|564290980|ref|YP_008877303.1|	-	6.6e-05	22.7	0.3	0.019	14.8	0.0	2.4	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_3	PF13492.6	gi|564290980|ref|YP_008877303.1|	-	0.0025	18.2	0.0	0.0099	16.2	0.0	2.0	1	0	0	1	1	1	1	GAF	domain
PAS_4	PF08448.10	gi|564290980|ref|YP_008877303.1|	-	0.005	17.1	1.0	0.041	14.1	0.0	3.0	3	0	0	3	3	3	1	PAS	fold
Com_YlbF	PF06133.11	gi|564290980|ref|YP_008877303.1|	-	0.03	14.9	1.3	0.22	12.1	0.8	2.5	2	0	0	2	2	2	0	Control	of	competence	regulator	ComK,	YlbF/YmcA
FleQ	PF06490.11	gi|564290980|ref|YP_008877303.1|	-	0.067	13.6	0.0	0.29	11.5	0.0	2.1	1	0	0	1	1	1	0	Flagellar	regulatory	protein	FleQ
HATPase_c_5	PF14501.6	gi|564290980|ref|YP_008877303.1|	-	0.078	12.9	0.2	0.96	9.4	0.0	2.8	3	1	0	3	3	3	0	GHKL	domain
DUF4350	PF14258.6	gi|564290980|ref|YP_008877303.1|	-	3.7	8.1	7.1	4.4	7.8	0.2	3.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4350)
GramPos_pilinD1	PF16555.5	gi|564290982|ref|YP_008877305.1|	-	9.5e-05	22.6	0.3	0.0001	22.5	0.3	1.1	1	0	0	1	1	1	1	Gram-positive	pilin	subunit	D1,	N-terminal	domain
ASCH	PF04266.14	gi|564290982|ref|YP_008877305.1|	-	0.0099	16.5	0.1	0.019	15.6	0.0	1.4	2	0	0	2	2	2	1	ASCH	domain
CAML	PF14963.6	gi|564290982|ref|YP_008877305.1|	-	0.12	12.5	0.2	0.15	12.2	0.2	1.1	1	0	0	1	1	1	0	Calcium	signal-modulating	cyclophilin	ligand
NOG1_N	PF17835.1	gi|564290983|ref|YP_008877306.1|	-	2.5e-36	125.1	0.0	5.9e-36	123.8	0.0	1.6	1	1	0	1	1	1	1	NOG1	N-terminal	helical	domain
NOG1	PF06858.14	gi|564290983|ref|YP_008877306.1|	-	6.5e-23	80.3	0.0	1.3e-22	79.3	0.0	1.5	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.23	gi|564290983|ref|YP_008877306.1|	-	4.1e-20	72.0	0.0	7.9e-20	71.1	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|564290983|ref|YP_008877306.1|	-	3.6e-11	42.8	0.0	6.1e-11	42.1	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Dynamin_N	PF00350.23	gi|564290983|ref|YP_008877306.1|	-	1.2e-05	25.4	0.1	0.43	10.6	0.0	3.1	2	1	1	3	3	3	2	Dynamin	family
RsgA_GTPase	PF03193.16	gi|564290983|ref|YP_008877306.1|	-	0.01	15.8	0.0	0.11	12.4	0.0	2.5	3	1	0	3	3	3	0	RsgA	GTPase
Ras	PF00071.22	gi|564290983|ref|YP_008877306.1|	-	0.011	15.3	0.0	0.045	13.4	0.0	2.0	1	1	0	1	1	1	0	Ras	family
AAA_16	PF13191.6	gi|564290983|ref|YP_008877306.1|	-	0.018	15.4	0.0	0.046	14.1	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
AIG1	PF04548.16	gi|564290983|ref|YP_008877306.1|	-	0.029	13.7	0.0	0.052	12.9	0.0	1.5	1	0	0	1	1	1	0	AIG1	family
DASH_Dam1	PF08653.10	gi|564290983|ref|YP_008877306.1|	-	0.08	12.7	0.0	0.24	11.3	0.0	1.7	1	0	0	1	1	1	0	DASH	complex	subunit	Dam1
SIMPL	PF04402.14	gi|564290984|ref|YP_008877307.1|	-	8.4e-36	124.3	18.1	9.7e-36	124.1	18.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF541)
DUF389	PF04087.14	gi|564290985|ref|YP_008877308.1|	-	8e-35	119.9	17.0	8e-35	119.9	17.0	2.1	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF389)
HPP	PF04982.13	gi|564290985|ref|YP_008877308.1|	-	0.46	10.7	18.6	6.3	7.0	9.9	3.0	2	1	1	3	3	3	0	HPP	family
MMR_HSR1	PF01926.23	gi|564290986|ref|YP_008877309.1|	-	1.3e-17	63.9	0.0	2.1e-17	63.3	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.18	gi|564290986|ref|YP_008877309.1|	-	9e-13	48.0	0.1	1.3e-11	44.3	0.1	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.27	gi|564290986|ref|YP_008877309.1|	-	2e-06	27.5	0.0	0.00044	19.8	0.0	2.2	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
RsgA_GTPase	PF03193.16	gi|564290986|ref|YP_008877309.1|	-	9.6e-06	25.6	0.1	0.022	14.7	0.1	2.4	2	1	0	2	2	2	2	RsgA	GTPase
AIG1	PF04548.16	gi|564290986|ref|YP_008877309.1|	-	0.0014	18.0	0.0	0.0028	17.0	0.0	1.5	1	1	1	2	2	2	1	AIG1	family
Roc	PF08477.13	gi|564290986|ref|YP_008877309.1|	-	0.0014	18.8	0.0	0.0026	17.9	0.0	1.5	1	0	0	1	1	1	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MeaB	PF03308.16	gi|564290986|ref|YP_008877309.1|	-	0.011	14.8	0.1	2.1	7.3	0.0	2.2	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
Ras	PF00071.22	gi|564290986|ref|YP_008877309.1|	-	0.011	15.3	0.0	0.029	14.0	0.0	1.7	2	0	0	2	2	2	0	Ras	family
AAA_22	PF13401.6	gi|564290986|ref|YP_008877309.1|	-	0.02	15.2	0.0	0.51	10.6	0.0	2.5	1	1	1	2	2	2	0	AAA	domain
TIP49	PF06068.13	gi|564290986|ref|YP_008877309.1|	-	0.021	14.1	0.3	0.036	13.3	0.3	1.3	1	0	0	1	1	1	0	TIP49	P-loop	domain
ABC_tran	PF00005.27	gi|564290986|ref|YP_008877309.1|	-	0.022	15.2	0.0	0.03	14.8	0.0	1.6	1	1	0	1	1	1	0	ABC	transporter
Dynamin_N	PF00350.23	gi|564290986|ref|YP_008877309.1|	-	0.023	14.8	0.1	0.069	13.2	0.1	1.8	1	1	1	2	2	2	0	Dynamin	family
PduV-EutP	PF10662.9	gi|564290986|ref|YP_008877309.1|	-	0.073	12.8	0.0	0.81	9.4	0.0	2.0	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_18	PF13238.6	gi|564290986|ref|YP_008877309.1|	-	0.12	12.9	0.0	0.25	11.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|564290986|ref|YP_008877309.1|	-	0.13	12.0	0.0	0.28	11.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_21	PF13304.6	gi|564290986|ref|YP_008877309.1|	-	0.15	11.8	0.0	0.32	10.8	0.0	1.5	2	0	0	2	2	2	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
RNA_helicase	PF00910.22	gi|564290986|ref|YP_008877309.1|	-	0.2	12.1	0.0	0.4	11.1	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Phage_integrase	PF00589.22	gi|564290987|ref|YP_008877310.1|	-	2.8e-07	30.5	0.0	1.4e-06	28.2	0.0	2.1	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_1	PF02899.17	gi|564290987|ref|YP_008877310.1|	-	6e-07	29.7	3.1	6.9e-07	29.5	0.3	2.4	2	1	1	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_5	PF13102.6	gi|564290987|ref|YP_008877310.1|	-	0.015	15.6	0.0	0.03	14.6	0.0	1.4	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
Phage_int_SAM_4	PF13495.6	gi|564290987|ref|YP_008877310.1|	-	0.1	13.0	0.0	0.43	11.1	0.0	1.8	1	1	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
Mrr_N	PF14338.6	gi|564290988|ref|YP_008877311.1|	-	2e-05	24.6	0.0	3.7e-05	23.8	0.0	1.5	1	1	0	1	1	1	1	Mrr	N-terminal	domain
AbiEi_4	PF13338.6	gi|564290988|ref|YP_008877311.1|	-	5.4e-05	23.3	0.0	7e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator,	AbiEi	antitoxin
HTH_27	PF13463.6	gi|564290988|ref|YP_008877311.1|	-	7.7e-05	23.1	0.1	9.7e-05	22.8	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.7	gi|564290988|ref|YP_008877311.1|	-	8.3e-05	22.6	0.0	0.00017	21.5	0.0	1.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564290988|ref|YP_008877311.1|	-	0.005	16.4	0.2	0.037	13.6	0.2	2.2	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|564290988|ref|YP_008877311.1|	-	0.005	16.8	0.0	0.0083	16.1	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn-helix
DUF2161	PF09929.9	gi|564290988|ref|YP_008877311.1|	-	0.0052	16.9	0.0	0.0064	16.6	0.0	1.2	1	0	0	1	1	1	1	Putative	PD-(D/E)XK	phosphodiesterase	(DUF2161)
HemN_C	PF06969.16	gi|564290988|ref|YP_008877311.1|	-	0.0054	16.8	0.0	0.0087	16.1	0.0	1.4	1	0	0	1	1	1	1	HemN	C-terminal	domain
Replic_Relax	PF13814.6	gi|564290988|ref|YP_008877311.1|	-	0.098	12.7	0.0	0.11	12.6	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
Ribosomal_S19e	PF01090.19	gi|564290988|ref|YP_008877311.1|	-	0.14	11.8	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S19e
AAA_22	PF13401.6	gi|564290990|ref|YP_008877315.1|	-	1.1e-09	38.6	0.1	3.2e-09	37.2	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|564290990|ref|YP_008877315.1|	-	7.6e-09	36.2	3.5	1.6e-07	31.9	3.5	3.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.29	gi|564290990|ref|YP_008877315.1|	-	1.3e-06	28.8	0.0	5e-06	27.0	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.6	gi|564290990|ref|YP_008877315.1|	-	0.00093	19.4	1.0	0.018	15.2	0.2	2.7	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.14	gi|564290990|ref|YP_008877315.1|	-	0.0011	19.0	0.2	0.047	13.7	0.0	2.7	2	1	1	3	3	3	1	AAA	domain	(dynein-related	subfamily)
AAA_7	PF12775.7	gi|564290990|ref|YP_008877315.1|	-	0.0019	17.7	0.0	0.0047	16.4	0.0	1.6	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
AAA_18	PF13238.6	gi|564290990|ref|YP_008877315.1|	-	0.0028	18.2	0.0	0.016	15.8	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.6	gi|564290990|ref|YP_008877315.1|	-	0.016	15.5	0.2	0.047	14.0	0.2	1.7	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564290990|ref|YP_008877315.1|	-	0.017	15.0	0.0	0.052	13.4	0.0	1.8	2	0	0	2	2	1	0	ATPase	domain	predominantly	from	Archaea
DEAD	PF00270.29	gi|564290990|ref|YP_008877315.1|	-	0.019	14.7	0.1	3.5	7.4	0.0	2.6	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
NACHT	PF05729.12	gi|564290990|ref|YP_008877315.1|	-	0.021	14.8	0.0	0.039	13.9	0.0	1.6	1	1	0	1	1	1	0	NACHT	domain
Mg_chelatase	PF01078.21	gi|564290990|ref|YP_008877315.1|	-	0.024	14.0	0.1	0.049	13.0	0.1	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|564290990|ref|YP_008877315.1|	-	0.043	13.5	0.0	0.12	12.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|564290990|ref|YP_008877315.1|	-	0.048	13.7	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_11	PF13086.6	gi|564290990|ref|YP_008877315.1|	-	0.048	13.4	0.3	0.098	12.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564290990|ref|YP_008877315.1|	-	0.05	13.7	0.0	0.095	12.8	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
NB-ARC	PF00931.22	gi|564290990|ref|YP_008877315.1|	-	0.051	12.7	0.0	0.083	12.1	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
DUF815	PF05673.13	gi|564290990|ref|YP_008877315.1|	-	0.054	12.6	0.0	0.11	11.7	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
RuvB_N	PF05496.12	gi|564290990|ref|YP_008877315.1|	-	0.06	13.1	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
RNA_helicase	PF00910.22	gi|564290990|ref|YP_008877315.1|	-	0.072	13.5	0.0	0.14	12.6	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
GvpD	PF07088.11	gi|564290990|ref|YP_008877315.1|	-	0.079	11.6	0.4	0.29	9.7	0.0	1.8	2	0	0	2	2	2	0	GvpD	gas	vesicle	protein
NTPase_1	PF03266.15	gi|564290990|ref|YP_008877315.1|	-	0.11	12.4	1.2	0.71	9.8	0.1	2.6	3	0	0	3	3	3	0	NTPase
AAA_14	PF13173.6	gi|564290990|ref|YP_008877315.1|	-	0.14	12.2	0.0	0.61	10.1	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
RHH_1	PF01402.21	gi|564290991|ref|YP_008877318.1|	-	0.00021	21.1	0.1	0.00033	20.5	0.1	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
HicB_lk_antitox	PF15919.5	gi|564290991|ref|YP_008877318.1|	-	0.073	13.2	0.0	0.097	12.8	0.0	1.2	1	0	0	1	1	1	0	HicB_like	antitoxin	of	bacterial	toxin-antitoxin	system
YhfC	PF10086.9	gi|564291397|ref|YP_008877319.1|	-	0.029	13.7	0.1	0.032	13.6	0.1	1.1	1	0	0	1	1	1	0	YhfC	intramembrane	metalloprotease
DUF2027	PF09640.10	gi|564290996|ref|YP_008877324.1|	-	0.056	13.0	0.1	0.13	11.8	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2027)
DUF4510	PF14971.6	gi|564290996|ref|YP_008877324.1|	-	0.06	13.7	0.0	0.14	12.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4510)
YnfE	PF17452.2	gi|564290996|ref|YP_008877324.1|	-	0.065	13.5	1.2	0.37	11.1	0.8	2.6	2	0	0	2	2	2	0	Uncharacterized	YnfE-like
DUF4381	PF14316.6	gi|564290998|ref|YP_008877326.1|	-	0.078	13.2	1.8	0.16	12.2	1.8	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4381)
WRW	PF10206.9	gi|564290998|ref|YP_008877326.1|	-	0.11	12.9	0.1	0.68	10.3	0.0	2.0	2	0	0	2	2	2	0	Mitochondrial	F1F0-ATP	synthase,	subunit	f
Tmemb_14	PF03647.13	gi|564290998|ref|YP_008877326.1|	-	0.12	13.1	0.0	0.19	12.5	0.0	1.2	1	0	0	1	1	1	0	Transmembrane	proteins	14C
CoatB	PF10389.9	gi|564290998|ref|YP_008877326.1|	-	4.8	7.1	6.0	1.1	9.1	1.9	2.0	2	0	0	2	2	2	0	Bacteriophage	coat	protein	B
AAA_30	PF13604.6	gi|564290999|ref|YP_008877327.1|	-	0.11	12.1	0.0	0.4	10.4	0.0	1.8	1	1	0	2	2	2	0	AAA	domain
ODAM	PF15424.6	gi|564291398|ref|YP_008877329.1|	-	0.12	11.9	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Odontogenic	ameloblast-associated	family
Aha1_N	PF09229.11	gi|564291398|ref|YP_008877329.1|	-	0.56	10.4	3.9	2.1	8.5	0.9	2.0	1	1	1	2	2	2	0	Activator	of	Hsp90	ATPase,	N-terminal
HTH_15	PF12324.8	gi|564291001|ref|YP_008877330.1|	-	0.0022	17.9	0.8	0.0069	16.3	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	alkylmercury	lyase
MarR_2	PF12802.7	gi|564291001|ref|YP_008877330.1|	-	0.0058	16.5	0.0	0.013	15.4	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.6	gi|564291001|ref|YP_008877330.1|	-	0.099	12.5	0.2	1.6	8.7	0.0	2.6	2	0	0	2	2	2	0	Homeodomain-like	domain
Sigma70_r4_2	PF08281.12	gi|564291002|ref|YP_008877331.1|	-	3.8e-06	26.5	0.0	4.2e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_38	PF13936.6	gi|564291002|ref|YP_008877331.1|	-	0.042	13.6	0.0	0.091	12.5	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
UPF0167	PF03691.14	gi|564291003|ref|YP_008877332.1|	-	0.028	14.2	0.1	0.031	14.1	0.1	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0167)
Zn-ribbon_8	PF09723.10	gi|564291003|ref|YP_008877332.1|	-	0.68	10.1	5.5	1.5	9.0	0.2	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
Ribosomal_S10	PF00338.22	gi|564291004|ref|YP_008877333.1|	-	3e-26	91.5	0.0	3.4e-26	91.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GTP_EFTU	PF00009.27	gi|564291005|ref|YP_008877334.1|	-	7e-57	192.1	0.0	8.4e-57	191.9	0.0	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|564291005|ref|YP_008877334.1|	-	1.7e-37	128.1	0.0	4.2e-37	126.9	0.0	1.7	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|564291005|ref|YP_008877334.1|	-	4.2e-16	59.1	2.8	1.9e-15	57.0	0.7	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|564291005|ref|YP_008877334.1|	-	6.7e-07	29.4	0.1	5e-06	26.6	0.1	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|564291005|ref|YP_008877334.1|	-	0.0015	18.5	0.2	0.19	11.6	0.0	2.4	1	1	1	2	2	2	1	RsgA	GTPase
GTP_EFTU_D4	PF14578.6	gi|564291005|ref|YP_008877334.1|	-	0.0072	16.2	0.3	0.021	14.7	0.3	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
Dynamin_N	PF00350.23	gi|564291005|ref|YP_008877334.1|	-	0.011	15.8	0.0	1.9	8.5	0.0	2.4	1	1	0	1	1	1	0	Dynamin	family
SRPRB	PF09439.10	gi|564291005|ref|YP_008877334.1|	-	0.013	14.9	0.0	0.95	8.9	0.0	2.3	1	1	1	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
Gtr1_RagA	PF04670.12	gi|564291005|ref|YP_008877334.1|	-	0.017	14.5	0.0	0.082	12.2	0.0	1.9	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
FeoB_N	PF02421.18	gi|564291005|ref|YP_008877334.1|	-	0.05	13.1	0.0	0.68	9.5	0.0	2.3	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Homoserine_dh	PF00742.19	gi|564291006|ref|YP_008877335.1|	-	6.8e-49	166.1	0.2	1e-48	165.5	0.2	1.2	1	0	0	1	1	1	1	Homoserine	dehydrogenase
ELFV_dehydrog	PF00208.21	gi|564291006|ref|YP_008877335.1|	-	1.3e-08	34.9	0.2	4e-08	33.3	0.1	1.9	2	0	0	2	2	2	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_3	PF03447.16	gi|564291006|ref|YP_008877335.1|	-	2.2e-06	28.3	0.9	4.4e-06	27.3	0.3	1.8	2	0	0	2	2	2	1	Homoserine	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|564291006|ref|YP_008877335.1|	-	0.0017	18.3	0.1	0.0026	17.7	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.22	gi|564291006|ref|YP_008877335.1|	-	0.0022	18.8	0.1	0.0047	17.7	0.1	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
TrkA_N	PF02254.18	gi|564291006|ref|YP_008877335.1|	-	0.011	15.9	0.2	0.063	13.5	0.1	2.2	2	0	0	2	2	2	0	TrkA-N	domain
ApbA	PF02558.16	gi|564291006|ref|YP_008877335.1|	-	0.032	13.9	0.0	0.051	13.2	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.27	gi|564291006|ref|YP_008877335.1|	-	0.033	14.7	0.2	0.078	13.5	0.2	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
PglD_N	PF17836.1	gi|564291006|ref|YP_008877335.1|	-	0.036	14.7	0.1	0.1	13.3	0.1	1.8	1	0	0	1	1	1	0	PglD	N-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|564291006|ref|YP_008877335.1|	-	0.043	14.1	0.3	0.093	13.0	0.3	1.7	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564291006|ref|YP_008877335.1|	-	0.053	13.5	0.0	0.11	12.5	0.0	1.6	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
2-Hacid_dh_C	PF02826.19	gi|564291006|ref|YP_008877335.1|	-	0.073	12.4	0.1	0.14	11.5	0.1	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.17	gi|564291006|ref|YP_008877335.1|	-	0.091	11.8	0.3	0.13	11.3	0.3	1.2	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
NAD_binding_8	PF13450.6	gi|564291006|ref|YP_008877335.1|	-	0.098	12.9	0.6	0.26	11.5	0.6	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564291006|ref|YP_008877335.1|	-	0.11	12.0	0.1	0.2	11.2	0.1	1.5	1	1	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ACT	PF01842.25	gi|564291007|ref|YP_008877336.1|	-	0.0011	18.7	0.9	0.12	12.1	0.0	2.8	3	1	0	3	3	3	2	ACT	domain
Sigma70_r1_1	PF03979.14	gi|564291007|ref|YP_008877336.1|	-	0.12	12.5	0.1	0.34	11.0	0.0	1.8	2	0	0	2	2	2	0	Sigma-70	factor,	region	1.1
TetR_C_22	PF17928.1	gi|564291400|ref|YP_008877338.1|	-	0.067	13.5	0.0	0.36	11.2	0.0	2.0	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
GTP_EFTU	PF00009.27	gi|564291008|ref|YP_008877339.1|	-	1.3e-64	217.3	0.4	2.2e-64	216.6	0.4	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_C	PF00679.24	gi|564291008|ref|YP_008877339.1|	-	1.5e-24	85.8	0.1	3.4e-23	81.5	0.0	2.9	3	0	0	3	3	3	1	Elongation	factor	G	C-terminus
EFG_IV	PF03764.18	gi|564291008|ref|YP_008877339.1|	-	4.4e-23	81.4	0.0	1.3e-22	79.8	0.0	1.8	1	0	0	1	1	1	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.6	gi|564291008|ref|YP_008877339.1|	-	1.3e-21	76.5	0.3	1.3e-21	76.5	0.3	1.9	2	0	0	2	2	2	1	Elongation	Factor	G,	domain	II
GTP_EFTU_D2	PF03144.25	gi|564291008|ref|YP_008877339.1|	-	1.5e-16	60.6	1.0	9.8e-16	57.9	1.0	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|564291008|ref|YP_008877339.1|	-	3.2e-05	24.0	0.6	9.3e-05	22.5	0.1	2.1	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
RF3_C	PF16658.5	gi|564291008|ref|YP_008877339.1|	-	0.068	13.0	0.1	0.14	11.9	0.1	1.5	1	0	0	1	1	1	0	Class	II	release	factor	RF3,	C-terminal	domain
SRPRB	PF09439.10	gi|564291008|ref|YP_008877339.1|	-	0.08	12.4	0.2	0.22	10.9	0.2	1.7	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Ras	PF00071.22	gi|564291008|ref|YP_008877339.1|	-	0.17	11.5	0.0	0.38	10.3	0.0	1.5	1	0	0	1	1	1	0	Ras	family
Cys_Met_Meta_PP	PF01053.20	gi|564291009|ref|YP_008877340.1|	-	1.4e-138	461.6	0.0	1.7e-138	461.4	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|564291009|ref|YP_008877340.1|	-	3e-10	40.0	0.6	5.4e-10	39.1	0.5	1.4	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.21	gi|564291009|ref|YP_008877340.1|	-	4.9e-05	22.7	0.0	7.1e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|564291009|ref|YP_008877340.1|	-	0.0011	18.1	0.0	0.0018	17.3	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.21	gi|564291009|ref|YP_008877340.1|	-	0.0075	15.6	0.1	0.034	13.4	0.1	2.0	1	1	0	1	1	1	1	Beta-eliminating	lyase
Met_gamma_lyase	PF06838.11	gi|564291009|ref|YP_008877340.1|	-	0.049	12.2	0.0	0.3	9.6	0.0	2.1	2	1	0	2	2	2	0	Methionine	gamma-lyase
Ter	PF05472.11	gi|564291010|ref|YP_008877341.1|	-	0.096	11.7	0.2	0.14	11.1	0.2	1.2	1	0	0	1	1	1	0	DNA	replication	terminus	site-binding	protein	(Ter	protein)
PAS_3	PF08447.12	gi|564291011|ref|YP_008877342.1|	-	1.3e-49	166.4	2.9	1.7e-12	47.4	0.1	5.5	5	0	0	5	5	5	4	PAS	fold
PAS_4	PF08448.10	gi|564291011|ref|YP_008877342.1|	-	2.1e-40	137.4	12.6	3e-17	62.8	0.1	4.9	4	0	0	4	4	4	4	PAS	fold
PAS_9	PF13426.7	gi|564291011|ref|YP_008877342.1|	-	6.2e-29	100.3	1.5	8.3e-14	51.7	0.0	5.2	5	0	0	5	5	5	4	PAS	domain
Response_reg	PF00072.24	gi|564291011|ref|YP_008877342.1|	-	1.2e-22	80.2	0.8	3.4e-22	78.7	0.1	2.2	2	0	0	2	2	2	1	Response	regulator	receiver	domain
PAS	PF00989.25	gi|564291011|ref|YP_008877342.1|	-	4.3e-21	75.0	1.9	4e-08	33.2	0.0	4.7	4	0	0	4	4	4	4	PAS	fold
HATPase_c	PF02518.26	gi|564291011|ref|YP_008877342.1|	-	7e-15	55.5	1.3	2e-14	54.0	0.2	2.4	3	0	0	3	3	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564291011|ref|YP_008877342.1|	-	5.8e-10	39.1	1.3	5.8e-10	39.1	1.3	3.2	4	0	0	4	4	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_8	PF13188.7	gi|564291011|ref|YP_008877342.1|	-	8.2e-06	25.7	2.3	0.014	15.4	0.1	4.3	4	0	0	4	4	3	1	PAS	domain
GAF_3	PF13492.6	gi|564291011|ref|YP_008877342.1|	-	3.6e-05	24.1	0.0	0.00014	22.2	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
OKR_DC_1_N	PF03709.15	gi|564291011|ref|YP_008877342.1|	-	0.0015	18.7	1.3	0.0047	17.2	0.0	2.6	3	0	0	3	3	3	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HATPase_c_2	PF13581.6	gi|564291011|ref|YP_008877342.1|	-	0.0016	18.4	0.3	0.0064	16.5	0.3	2.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_11	PF14598.6	gi|564291011|ref|YP_008877342.1|	-	0.0082	16.3	0.0	0.48	10.6	0.0	3.4	3	0	0	3	3	3	1	PAS	domain
PAS_10	PF13596.6	gi|564291011|ref|YP_008877342.1|	-	0.0097	16.5	0.1	2.7	8.6	0.0	3.9	3	1	1	4	4	3	1	PAS	domain
HATPase_c_3	PF13589.6	gi|564291011|ref|YP_008877342.1|	-	0.11	12.3	0.0	0.37	10.6	0.0	1.8	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_7	PF12860.7	gi|564291011|ref|YP_008877342.1|	-	5.3	7.2	0.0	5.3	7.2	0.0	4.8	7	0	0	7	7	6	0	PAS	fold
ZapB	PF06005.12	gi|564291011|ref|YP_008877342.1|	-	6.8	7.2	10.2	4.5	7.8	0.4	4.3	4	0	0	4	4	4	0	Cell	division	protein	ZapB
CbiQ	PF02361.16	gi|564291012|ref|YP_008877343.1|	-	3.1e-18	66.2	2.1	4.9e-18	65.6	2.1	1.2	1	0	0	1	1	1	1	Cobalt	transport	protein
ABC_tran	PF00005.27	gi|564291013|ref|YP_008877344.1|	-	3.4e-29	102.1	0.0	4.6e-29	101.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564291013|ref|YP_008877344.1|	-	1.4e-08	34.9	0.1	0.0045	16.8	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_16	PF13191.6	gi|564291013|ref|YP_008877344.1|	-	5.5e-07	30.1	2.0	1.3e-06	28.9	2.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.19	gi|564291013|ref|YP_008877344.1|	-	3.6e-06	26.6	0.0	1.4e-05	24.7	0.0	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564291013|ref|YP_008877344.1|	-	5.4e-06	26.1	0.1	1.1e-05	25.1	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_5	PF07728.14	gi|564291013|ref|YP_008877344.1|	-	0.00025	21.0	0.0	0.00044	20.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_23	PF13476.6	gi|564291013|ref|YP_008877344.1|	-	0.00026	21.6	0.0	0.00032	21.3	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564291013|ref|YP_008877344.1|	-	0.0013	19.0	0.1	0.0023	18.2	0.0	1.6	2	1	0	2	2	1	1	AAA	domain
AAA_18	PF13238.6	gi|564291013|ref|YP_008877344.1|	-	0.004	17.7	0.1	0.99	10.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|564291013|ref|YP_008877344.1|	-	0.0061	16.3	0.0	0.014	15.2	0.0	1.5	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_33	PF13671.6	gi|564291013|ref|YP_008877344.1|	-	0.0064	16.7	0.0	0.018	15.2	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.6	gi|564291013|ref|YP_008877344.1|	-	0.0066	16.2	0.0	0.0093	15.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.12	gi|564291013|ref|YP_008877344.1|	-	0.0082	16.1	0.0	0.014	15.3	0.0	1.4	1	0	0	1	1	1	1	NACHT	domain
Mg_chelatase	PF01078.21	gi|564291013|ref|YP_008877344.1|	-	0.0094	15.4	0.0	0.013	14.9	0.0	1.2	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.6	gi|564291013|ref|YP_008877344.1|	-	0.01	15.6	0.0	0.022	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
DUF1707	PF08044.11	gi|564291013|ref|YP_008877344.1|	-	0.011	15.8	0.9	0.55	10.3	0.2	2.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1707)
AAA	PF00004.29	gi|564291013|ref|YP_008877344.1|	-	0.012	16.0	0.0	0.024	15.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.6	gi|564291013|ref|YP_008877344.1|	-	0.02	14.5	0.2	0.056	13.0	0.2	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_7	PF12775.7	gi|564291013|ref|YP_008877344.1|	-	0.022	14.3	0.0	0.034	13.7	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
TniB	PF05621.11	gi|564291013|ref|YP_008877344.1|	-	0.034	13.6	0.0	0.056	12.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	TniB	protein
cobW	PF02492.19	gi|564291013|ref|YP_008877344.1|	-	0.037	13.6	0.0	0.072	12.7	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.22	gi|564291013|ref|YP_008877344.1|	-	0.042	13.5	0.1	0.069	12.8	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|564291013|ref|YP_008877344.1|	-	0.044	13.1	0.0	0.1	11.8	0.0	1.5	2	0	0	2	2	2	0	Zeta	toxin
ATPase	PF06745.13	gi|564291013|ref|YP_008877344.1|	-	0.048	13.0	0.0	0.076	12.4	0.0	1.3	1	0	0	1	1	1	0	KaiC
AAA_27	PF13514.6	gi|564291013|ref|YP_008877344.1|	-	0.075	12.6	0.0	0.21	11.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|564291013|ref|YP_008877344.1|	-	0.098	12.7	0.0	0.18	11.8	0.0	1.3	1	0	0	1	1	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
SbcCD_C	PF13558.6	gi|564291013|ref|YP_008877344.1|	-	0.12	12.7	0.1	1.5	9.1	0.1	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_28	PF13521.6	gi|564291013|ref|YP_008877344.1|	-	0.14	12.4	0.0	0.26	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|564291013|ref|YP_008877344.1|	-	0.15	10.7	0.0	0.22	10.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.6	gi|564291013|ref|YP_008877344.1|	-	0.16	12.0	0.0	0.35	10.9	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
G-alpha	PF00503.20	gi|564291013|ref|YP_008877344.1|	-	0.22	10.7	0.0	0.31	10.2	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
Polyoma_lg_T_C	PF06431.11	gi|564291013|ref|YP_008877344.1|	-	0.24	10.2	0.0	0.28	10.0	0.0	1.1	1	0	0	1	1	1	0	Polyomavirus	large	T	antigen	C-terminus
AAA_PrkA	PF08298.11	gi|564291013|ref|YP_008877344.1|	-	0.31	9.9	0.0	0.44	9.4	0.0	1.1	1	0	0	1	1	1	0	PrkA	AAA	domain
SART-1	PF03343.13	gi|564291013|ref|YP_008877344.1|	-	0.32	9.5	0.6	0.4	9.2	0.6	1.0	1	0	0	1	1	1	0	SART-1	family
BioY	PF02632.14	gi|564291014|ref|YP_008877345.1|	-	2.7e-28	98.7	24.8	2.7e-28	98.7	24.8	1.4	2	0	0	2	2	2	1	BioY	family
GSDH	PF07995.11	gi|564291015|ref|YP_008877346.1|	-	1e-87	294.6	0.2	1.3e-87	294.2	0.2	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
TAT_signal	PF10518.9	gi|564291015|ref|YP_008877346.1|	-	0.18	11.7	5.7	0.41	10.6	5.7	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Ribosomal_S7	PF00177.21	gi|564291016|ref|YP_008877347.1|	-	6.7e-39	132.9	2.6	8.8e-39	132.5	2.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
PBECR3	PF18812.1	gi|564291016|ref|YP_008877347.1|	-	0.037	14.0	0.1	0.056	13.4	0.1	1.3	1	0	0	1	1	1	0	phage-Barnase-EndoU-ColicinE5/D-RelE	like	nuclease3
Ribosom_S12_S23	PF00164.25	gi|564291017|ref|YP_008877348.1|	-	3.3e-50	168.5	0.4	4.1e-50	168.2	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
MCPsignal	PF00015.21	gi|564291018|ref|YP_008877349.1|	-	2.7e-45	154.3	59.3	3.5e-43	147.4	22.1	4.8	2	1	3	5	5	5	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|564291018|ref|YP_008877349.1|	-	4e-14	52.7	14.6	1.2e-07	32.0	0.0	6.1	6	2	0	6	6	5	2	HAMP	domain
DUF948	PF06103.11	gi|564291018|ref|YP_008877349.1|	-	1.4e-05	25.2	43.6	0.00033	20.9	1.0	7.4	4	1	1	7	7	7	3	Bacterial	protein	of	unknown	function	(DUF948)
Laminin_II	PF06009.12	gi|564291018|ref|YP_008877349.1|	-	3.6e-05	23.8	30.5	0.032	14.3	0.8	5.6	1	1	4	5	5	5	3	Laminin	Domain	II
dCache_1	PF02743.18	gi|564291018|ref|YP_008877349.1|	-	5.2e-05	23.2	1.9	5.2e-05	23.2	1.9	4.2	3	2	0	3	3	2	1	Cache	domain
DHC_N1	PF08385.12	gi|564291018|ref|YP_008877349.1|	-	0.00035	19.4	0.0	0.017	13.8	0.0	2.2	1	1	1	2	2	2	1	Dynein	heavy	chain,	N-terminal	region	1
BLOC1_2	PF10046.9	gi|564291018|ref|YP_008877349.1|	-	0.00038	20.7	25.4	0.51	10.7	0.4	6.1	3	2	1	5	5	5	3	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
BORCS6	PF10157.9	gi|564291018|ref|YP_008877349.1|	-	0.0018	18.5	0.5	0.0018	18.5	0.5	4.2	2	2	0	2	2	2	1	BLOC-1-related	complex	sub-unit	6
RecG_N	PF17190.4	gi|564291018|ref|YP_008877349.1|	-	0.02	15.6	5.9	4.5	8.1	0.5	4.5	4	0	0	4	4	4	0	RecG	N-terminal	helical	domain
LXG	PF04740.12	gi|564291018|ref|YP_008877349.1|	-	0.022	14.5	1.0	0.022	14.5	1.0	5.1	1	1	3	4	4	4	0	LXG	domain	of	WXG	superfamily
RmuC	PF02646.16	gi|564291018|ref|YP_008877349.1|	-	0.024	13.8	18.4	0.66	9.0	0.1	5.4	2	2	2	5	5	5	0	RmuC	family
Muted	PF14942.6	gi|564291018|ref|YP_008877349.1|	-	0.087	13.2	20.1	0.59	10.5	0.3	4.0	2	1	2	4	4	4	0	Organelle	biogenesis,	Muted-like	protein
Prominin	PF05478.11	gi|564291018|ref|YP_008877349.1|	-	0.094	10.7	13.0	0.66	7.9	5.1	2.6	1	1	1	2	2	2	0	Prominin
Fib_alpha	PF08702.10	gi|564291018|ref|YP_008877349.1|	-	0.095	12.9	17.9	0.48	10.6	0.3	4.8	2	2	3	5	5	5	0	Fibrinogen	alpha/beta	chain	family
CALCOCO1	PF07888.11	gi|564291018|ref|YP_008877349.1|	-	0.12	11.2	25.1	0.74	8.6	15.0	2.5	2	0	0	2	2	2	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
BLI1	PF17324.2	gi|564291018|ref|YP_008877349.1|	-	0.14	12.8	3.3	29	5.4	1.0	3.5	2	1	0	2	2	2	0	BLOC-1	interactor	1
COG2	PF06148.11	gi|564291018|ref|YP_008877349.1|	-	0.16	12.0	23.4	0.31	11.1	0.8	6.1	1	1	6	7	7	7	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
CotJB	PF12652.7	gi|564291018|ref|YP_008877349.1|	-	0.21	11.8	0.3	3.6	7.9	0.0	2.7	2	0	0	2	2	2	0	CotJB	protein
RPW8	PF05659.11	gi|564291018|ref|YP_008877349.1|	-	0.23	11.1	6.9	17	5.1	0.1	4.5	4	1	1	5	5	5	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
ApoO	PF09769.9	gi|564291018|ref|YP_008877349.1|	-	0.27	11.2	1.9	26	4.8	0.2	3.5	2	2	1	3	3	3	0	Apolipoprotein	O
DUF1664	PF07889.12	gi|564291018|ref|YP_008877349.1|	-	0.34	11.0	32.3	0.34	11.0	1.5	6.0	3	2	3	6	6	5	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|564291018|ref|YP_008877349.1|	-	0.4	9.5	28.3	0.13	11.1	3.4	3.7	1	1	2	3	3	3	0	Spc7	kinetochore	protein
APG17	PF04108.12	gi|564291018|ref|YP_008877349.1|	-	0.66	9.0	34.5	0.32	10.1	6.3	3.7	1	1	2	3	3	3	0	Autophagy	protein	Apg17
DASH_Dam1	PF08653.10	gi|564291018|ref|YP_008877349.1|	-	0.82	9.5	6.1	24	4.8	0.0	5.0	7	0	0	7	7	4	0	DASH	complex	subunit	Dam1
Med28	PF11594.8	gi|564291018|ref|YP_008877349.1|	-	0.88	9.6	6.9	2.7	8.1	0.3	3.4	2	1	1	3	3	3	0	Mediator	complex	subunit	28
DASH_Duo1	PF08651.10	gi|564291018|ref|YP_008877349.1|	-	1.2	8.9	11.6	9.8	6.0	0.2	5.8	5	1	1	6	6	6	0	DASH	complex	subunit	Duo1
KxDL	PF10241.9	gi|564291018|ref|YP_008877349.1|	-	1.3	9.4	4.6	13	6.2	0.1	4.4	3	2	3	6	6	6	0	Uncharacterized	conserved	protein
Dor1	PF04124.12	gi|564291018|ref|YP_008877349.1|	-	1.3	7.6	14.9	2.8	6.5	0.2	4.3	2	1	2	4	4	4	0	Dor1-like	family
Hormone_1	PF00103.20	gi|564291018|ref|YP_008877349.1|	-	2.6	7.7	3.8	4.3	7.0	0.4	2.9	2	1	0	2	2	2	0	Somatotropin	hormone	family
FAP206	PF12018.8	gi|564291018|ref|YP_008877349.1|	-	3.6	7.0	6.1	3	7.3	0.8	3.4	3	1	0	3	3	3	0	Domain	of	unknown	function
Fzo_mitofusin	PF04799.13	gi|564291018|ref|YP_008877349.1|	-	5	6.7	11.6	11	5.6	0.2	4.9	3	2	2	5	5	5	0	fzo-like	conserved	region
Seryl_tRNA_N	PF02403.22	gi|564291018|ref|YP_008877349.1|	-	5.9	7.2	32.7	0.25	11.6	4.4	5.4	1	1	2	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
YccJ	PF13993.6	gi|564291018|ref|YP_008877349.1|	-	7.6	6.9	9.4	4.2	7.8	1.5	3.1	1	1	0	2	2	2	0	YccJ-like	protein
TMPIT	PF07851.13	gi|564291018|ref|YP_008877349.1|	-	9.1	5.4	13.2	5.1	6.3	1.6	3.8	2	1	1	4	4	4	0	TMPIT-like	protein
Snapin_Pallidin	PF14712.6	gi|564291018|ref|YP_008877349.1|	-	9.3	6.8	13.0	26	5.3	1.5	5.0	3	1	1	5	5	4	0	Snapin/Pallidin
CPP1-like	PF11833.8	gi|564291401|ref|YP_008877350.1|	-	0.24	11.0	1.4	0.34	10.5	1.4	1.3	1	1	0	1	1	1	0	Protein	CHAPERONE-LIKE	PROTEIN	OF	POR1-like
KH_2	PF07650.17	gi|564291019|ref|YP_008877351.1|	-	5.1e-15	55.1	0.3	2.2e-08	33.8	0.1	2.1	1	1	1	2	2	2	2	KH	domain
KH_4	PF13083.6	gi|564291019|ref|YP_008877351.1|	-	1.2e-10	41.1	0.1	2.4e-07	30.5	0.0	2.1	2	0	0	2	2	2	2	KH	domain
KH_5	PF13184.6	gi|564291019|ref|YP_008877351.1|	-	2.3e-10	40.4	0.1	4e-08	33.2	0.0	2.3	2	0	0	2	2	2	2	NusA-like	KH	domain
KH_1	PF00013.29	gi|564291019|ref|YP_008877351.1|	-	0.00064	19.5	0.0	0.4	10.6	0.0	2.3	2	0	0	2	2	2	2	KH	domain
GGDEF_2	PF17853.1	gi|564291019|ref|YP_008877351.1|	-	0.028	14.7	2.6	0.11	12.8	0.2	2.0	1	1	1	2	2	2	0	GGDEF-like	domain
RNA_pol_Rpb1_5	PF04998.17	gi|564291020|ref|YP_008877352.1|	-	1.5e-53	182.0	0.1	2e-53	181.6	0.1	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
HHH_4	PF14490.6	gi|564291020|ref|YP_008877352.1|	-	0.028	14.4	0.0	1.8	8.6	0.0	2.9	3	0	0	3	3	3	0	Helix-hairpin-helix	containing	domain
RNA_pol_Rpb1_1	PF04997.12	gi|564291021|ref|YP_008877353.1|	-	6.8e-113	377.1	0.0	1.1e-112	376.4	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.20	gi|564291021|ref|YP_008877353.1|	-	3e-68	229.3	0.3	4.9e-68	228.5	0.3	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_4	PF05000.17	gi|564291021|ref|YP_008877353.1|	-	4.2e-33	113.5	0.0	1e-32	112.3	0.0	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_5	PF04998.17	gi|564291021|ref|YP_008877353.1|	-	6.3e-26	91.4	0.0	1.3e-25	90.4	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_3	PF04983.18	gi|564291021|ref|YP_008877353.1|	-	2.4e-25	89.3	0.0	4.1e-25	88.6	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
HTH_3	PF01381.22	gi|564291021|ref|YP_008877353.1|	-	0.0019	18.2	0.0	0.0053	16.8	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix
RNA_pol_Rpb2_6	PF00562.28	gi|564291022|ref|YP_008877354.1|	-	6.5e-128	427.1	0.3	3.5e-127	424.7	0.0	1.9	2	0	0	2	2	2	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_7	PF04560.20	gi|564291022|ref|YP_008877354.1|	-	9.7e-31	106.0	0.3	1.7e-30	105.3	0.3	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.13	gi|564291022|ref|YP_008877354.1|	-	1.9e-21	76.1	0.3	3.2e-21	75.4	0.3	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.17	gi|564291022|ref|YP_008877354.1|	-	5.8e-08	33.2	4.4	2.6e-07	31.1	4.4	2.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
OrfB_Zn_ribbon	PF07282.11	gi|564291022|ref|YP_008877354.1|	-	0.024	14.5	1.3	0.05	13.5	1.3	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
NOB1_Zn_bind	PF08772.11	gi|564291022|ref|YP_008877354.1|	-	0.044	14.0	0.2	0.091	12.9	0.2	1.5	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DZR	PF12773.7	gi|564291022|ref|YP_008877354.1|	-	0.13	12.4	0.6	0.23	11.5	0.6	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-NADH-PPase	PF09297.11	gi|564291022|ref|YP_008877354.1|	-	1.2	8.9	2.9	1	9.1	1.3	1.8	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
RNA_pol_Rpb2_1	PF04563.15	gi|564291023|ref|YP_008877355.1|	-	2e-49	167.9	0.1	2.4e-49	167.6	0.1	1.1	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.14	gi|564291023|ref|YP_008877355.1|	-	2.4e-27	95.8	0.1	4.2e-27	95.0	0.1	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.16	gi|564291023|ref|YP_008877355.1|	-	1.6e-24	85.9	0.0	3.1e-24	84.9	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb5_C	PF01191.19	gi|564291024|ref|YP_008877356.1|	-	1.5e-23	82.4	0.8	1.8e-23	82.2	0.8	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
SKA2	PF16740.5	gi|564291025|ref|YP_008877357.1|	-	0.0006	19.6	0.1	0.44	10.3	0.2	2.4	2	1	0	2	2	2	2	Spindle	and	kinetochore-associated	protein	2
Spectrin	PF00435.21	gi|564291025|ref|YP_008877357.1|	-	0.012	16.1	0.7	0.1	13.1	0.2	2.3	2	0	0	2	2	2	0	Spectrin	repeat
LRRFIP	PF09738.9	gi|564291025|ref|YP_008877357.1|	-	0.016	14.7	1.7	0.096	12.1	0.5	2.0	2	0	0	2	2	2	0	LRRFIP	family
DUF4140	PF13600.6	gi|564291025|ref|YP_008877357.1|	-	0.034	14.6	2.0	0.12	12.8	0.4	2.3	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
PmrD	PF11183.8	gi|564291025|ref|YP_008877357.1|	-	0.064	13.4	0.0	9.5	6.4	0.0	2.9	2	1	0	3	3	3	0	Polymyxin	resistance	protein	PmrD
Phage_GP20	PF06810.11	gi|564291025|ref|YP_008877357.1|	-	0.1	12.4	0.2	5.7	6.7	0.1	2.1	2	0	0	2	2	2	0	Phage	minor	structural	protein	GP20
HEPN	PF05168.14	gi|564291025|ref|YP_008877357.1|	-	0.12	12.5	0.6	1.2	9.3	0.0	2.2	2	0	0	2	2	2	0	HEPN	domain
Syntaxin-6_N	PF09177.11	gi|564291025|ref|YP_008877357.1|	-	0.29	11.7	2.8	0.89	10.1	0.5	2.5	2	1	1	3	3	3	0	Syntaxin	6,	N-terminal
DivIC	PF04977.15	gi|564291025|ref|YP_008877357.1|	-	0.48	10.2	3.3	0.91	9.3	0.8	2.2	2	0	0	2	2	2	0	Septum	formation	initiator
PP-binding_2	PF14573.6	gi|564291025|ref|YP_008877357.1|	-	0.49	10.6	2.8	1.2	9.4	0.7	2.5	2	1	0	2	2	2	0	Acyl-carrier
HalX	PF08663.10	gi|564291025|ref|YP_008877357.1|	-	0.95	9.8	19.1	0.29	11.5	6.2	3.2	3	0	0	3	3	3	0	HalX	domain
HTH_24	PF13412.6	gi|564291026|ref|YP_008877358.1|	-	9.7e-08	31.5	0.1	1.7e-07	30.7	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564291026|ref|YP_008877358.1|	-	0.00011	21.9	0.0	0.00016	21.5	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.20	gi|564291026|ref|YP_008877358.1|	-	0.0023	17.8	0.0	0.0038	17.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564291026|ref|YP_008877358.1|	-	0.0024	17.7	0.0	0.0045	16.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|564291026|ref|YP_008877358.1|	-	0.0031	17.3	0.0	0.0057	16.5	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
GntR	PF00392.21	gi|564291026|ref|YP_008877358.1|	-	0.0067	16.1	0.0	0.01	15.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
FaeA	PF04703.12	gi|564291026|ref|YP_008877358.1|	-	0.015	15.7	0.0	0.021	15.2	0.0	1.2	1	0	0	1	1	1	0	FaeA-like	protein
HTH_IclR	PF09339.10	gi|564291026|ref|YP_008877358.1|	-	0.015	15.1	0.0	0.022	14.6	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564291026|ref|YP_008877358.1|	-	0.017	15.2	0.0	0.025	14.7	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_12	PF08461.10	gi|564291026|ref|YP_008877358.1|	-	0.053	13.5	0.4	0.18	11.7	0.1	2.0	1	1	1	2	2	2	0	Ribonuclease	R	winged-helix	domain
Phage_rep_org_N	PF09681.10	gi|564291026|ref|YP_008877358.1|	-	0.061	13.2	0.0	0.078	12.9	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_15	PF12324.8	gi|564291026|ref|YP_008877358.1|	-	0.07	13.1	0.0	0.13	12.2	0.0	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	alkylmercury	lyase
Rrf2	PF02082.20	gi|564291026|ref|YP_008877358.1|	-	0.11	12.8	0.0	0.17	12.2	0.0	1.4	1	1	0	1	1	1	0	Transcriptional	regulator
MerR	PF00376.23	gi|564291026|ref|YP_008877358.1|	-	0.13	12.0	0.0	0.74	9.6	0.0	2.0	2	0	0	2	2	2	0	MerR	family	regulatory	protein
Metallophos_2	PF12850.7	gi|564291027|ref|YP_008877359.1|	-	1.8e-29	103.0	0.2	2.1e-29	102.8	0.2	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
F420_ligase	PF01996.16	gi|564291028|ref|YP_008877360.1|	-	3.9e-59	200.0	0.0	4.8e-59	199.7	0.0	1.0	1	0	0	1	1	1	1	F420-0:Gamma-glutamyl	ligase
Bac_luciferase	PF00296.20	gi|564291029|ref|YP_008877361.1|	-	1.5e-59	202.0	12.4	1.9e-59	201.7	12.4	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Beta_elim_lyase	PF01212.21	gi|564291031|ref|YP_008877363.1|	-	1.5e-70	237.8	0.0	2.7e-70	237.0	0.0	1.4	1	1	0	1	1	1	1	Beta-eliminating	lyase
Methyltransf_11	PF08241.12	gi|564291032|ref|YP_008877364.1|	-	1.7e-21	76.7	0.0	2.7e-21	76.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564291032|ref|YP_008877364.1|	-	2.2e-19	69.9	0.0	3.9e-19	69.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564291032|ref|YP_008877364.1|	-	2.7e-18	66.2	0.0	3.7e-18	65.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564291032|ref|YP_008877364.1|	-	3.3e-12	46.6	0.0	4.6e-12	46.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564291032|ref|YP_008877364.1|	-	2.5e-10	41.0	0.0	3.8e-10	40.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564291032|ref|YP_008877364.1|	-	3.8e-10	39.5	0.0	5.3e-10	39.0	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_9	PF08003.11	gi|564291032|ref|YP_008877364.1|	-	9.8e-05	21.4	0.0	0.00013	21.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MetW	PF07021.12	gi|564291032|ref|YP_008877364.1|	-	0.00019	21.1	0.0	0.00028	20.5	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_2	PF00891.18	gi|564291032|ref|YP_008877364.1|	-	0.0016	17.8	0.0	0.0023	17.3	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase	domain
CMAS	PF02353.20	gi|564291032|ref|YP_008877364.1|	-	0.0018	17.6	0.0	0.0026	17.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Fibrillarin	PF01269.17	gi|564291032|ref|YP_008877364.1|	-	0.048	12.8	0.0	0.079	12.1	0.0	1.3	1	0	0	1	1	1	0	Fibrillarin
PCMT	PF01135.19	gi|564291032|ref|YP_008877364.1|	-	0.086	12.6	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
N6_N4_Mtase	PF01555.18	gi|564291032|ref|YP_008877364.1|	-	0.15	11.8	0.0	3.1	7.4	0.0	2.1	2	0	0	2	2	2	0	DNA	methylase
MTS	PF05175.14	gi|564291032|ref|YP_008877364.1|	-	0.15	11.6	0.0	0.26	10.8	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	small	domain
PrmA	PF06325.13	gi|564291032|ref|YP_008877364.1|	-	0.17	11.2	0.0	0.32	10.3	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_32	PF13679.6	gi|564291032|ref|YP_008877364.1|	-	0.18	11.8	0.0	0.31	11.0	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
ZF-HD_dimer	PF04770.12	gi|564291033|ref|YP_008877365.1|	-	0.05	13.9	1.0	0.095	13.1	1.0	1.5	1	0	0	1	1	1	0	ZF-HD	protein	dimerisation	region
Phosphoprotein	PF00922.17	gi|564291033|ref|YP_008877365.1|	-	0.58	9.7	5.9	0.68	9.5	5.9	1.1	1	0	0	1	1	1	0	Vesiculovirus	phosphoprotein
AAA_3	PF07726.11	gi|564291034|ref|YP_008877366.1|	-	7e-61	203.8	0.2	1.3e-60	203.0	0.2	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_lid_2	PF17863.1	gi|564291034|ref|YP_008877366.1|	-	6.5e-21	73.9	0.8	6.5e-21	73.9	0.8	2.0	2	0	0	2	2	2	1	AAA	lid	domain
AAA_5	PF07728.14	gi|564291034|ref|YP_008877366.1|	-	8.5e-14	51.7	0.0	1.5e-13	51.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.29	gi|564291034|ref|YP_008877366.1|	-	1.6e-06	28.6	0.0	4.7e-06	27.1	0.0	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.23	gi|564291034|ref|YP_008877366.1|	-	3.1e-06	26.5	0.0	4.9e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	MCM	P-loop	domain
Mg_chelatase	PF01078.21	gi|564291034|ref|YP_008877366.1|	-	4.2e-06	26.3	0.1	0.00014	21.4	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|564291034|ref|YP_008877366.1|	-	9.1e-06	25.5	0.0	0.0038	16.9	0.0	2.2	2	0	0	2	2	2	2	Sigma-54	interaction	domain
RuvB_N	PF05496.12	gi|564291034|ref|YP_008877366.1|	-	0.00014	21.6	0.0	0.0023	17.7	0.0	2.5	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_22	PF13401.6	gi|564291034|ref|YP_008877366.1|	-	0.11	12.8	0.0	0.29	11.4	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
DUF58	PF01882.18	gi|564291035|ref|YP_008877367.1|	-	3.5e-16	59.3	0.9	8.1e-16	58.1	0.9	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF1541	PF07563.11	gi|564291035|ref|YP_008877367.1|	-	0.21	11.5	3.1	11	6.0	0.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1541)
DUF4179	PF13786.6	gi|564291035|ref|YP_008877367.1|	-	0.24	11.9	2.2	8.1	7.0	0.7	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4179)
Transglut_core	PF01841.19	gi|564291036|ref|YP_008877368.1|	-	1.4e-25	89.9	0.1	4.5e-25	88.3	0.1	1.9	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Transglut_core3	PF13471.6	gi|564291036|ref|YP_008877368.1|	-	1.1e-05	25.4	0.5	5.4e-05	23.1	0.0	2.5	2	1	1	3	3	3	1	Transglutaminase-like	superfamily
DUF4129	PF13559.6	gi|564291036|ref|YP_008877368.1|	-	0.001	19.3	9.3	0.001	19.3	9.3	3.1	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4129)
SUI1	PF01253.22	gi|564291037|ref|YP_008877369.1|	-	9.8e-23	80.5	0.0	1.2e-22	80.2	0.0	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
Img2	PF05046.14	gi|564291037|ref|YP_008877369.1|	-	0.0016	18.7	0.0	0.0023	18.2	0.0	1.5	1	1	0	1	1	1	1	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DTW	PF03942.15	gi|564291037|ref|YP_008877369.1|	-	0.0074	16.0	0.5	0.0093	15.7	0.5	1.1	1	0	0	1	1	1	1	DTW	domain
PhnJ	PF06007.11	gi|564291038|ref|YP_008877370.1|	-	0.00015	20.9	0.1	0.032	13.3	0.1	2.3	2	0	0	2	2	2	2	Phosphonate	metabolism	protein	PhnJ
A2M	PF00207.22	gi|564291038|ref|YP_008877370.1|	-	0.072	12.9	0.1	1.8	8.5	0.1	3.0	2	0	0	2	2	2	0	Alpha-2-macroglobulin	family
EamA	PF00892.20	gi|564291039|ref|YP_008877371.1|	-	3.5e-22	79.1	29.2	1.6e-14	54.2	13.5	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
Phos_pyr_kin	PF08543.12	gi|564291041|ref|YP_008877373.1|	-	2.5e-82	275.9	6.4	4e-82	275.3	6.4	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
ThiP_synth	PF10120.9	gi|564291041|ref|YP_008877373.1|	-	2.5e-43	147.5	0.9	6.3e-43	146.2	0.9	1.7	1	0	0	1	1	1	1	Thiamine-phosphate	synthase
PfkB	PF00294.24	gi|564291041|ref|YP_008877373.1|	-	3.9e-08	33.0	3.3	6.3e-08	32.3	3.3	1.3	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
MTD	PF01993.18	gi|564291041|ref|YP_008877373.1|	-	0.035	13.4	0.1	0.055	12.8	0.1	1.3	1	0	0	1	1	1	0	methylene-5,6,7,8-tetrahydromethanopterin	dehydrogenase
BspA_v	PF18220.1	gi|564291041|ref|YP_008877373.1|	-	0.18	11.9	0.1	0.34	11.0	0.1	1.3	1	0	0	1	1	1	0	Adhesin	BspA	variable	domain
DSBA	PF01323.20	gi|564291042|ref|YP_008877374.1|	-	2.9e-36	125.1	0.0	3.4e-36	124.9	0.0	1.0	1	0	0	1	1	1	1	DSBA-like	thioredoxin	domain
Thioredoxin_4	PF13462.6	gi|564291042|ref|YP_008877374.1|	-	1.9e-08	34.7	0.0	4.7e-06	26.9	0.0	2.1	1	1	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564291042|ref|YP_008877374.1|	-	8.3e-05	23.0	0.4	0.0096	16.4	0.4	2.3	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_5	PF13743.6	gi|564291042|ref|YP_008877374.1|	-	0.0076	15.9	0.0	0.13	11.9	0.0	2.4	3	0	0	3	3	3	1	Thioredoxin
2-Hacid_dh_C	PF02826.19	gi|564291043|ref|YP_008877375.1|	-	4.1e-53	179.4	0.0	6.1e-53	178.8	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|564291043|ref|YP_008877375.1|	-	1.2e-06	28.3	0.1	1.6e-06	27.8	0.1	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.15	gi|564291043|ref|YP_008877375.1|	-	0.00011	22.4	0.1	0.0002	21.5	0.1	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
F420_oxidored	PF03807.17	gi|564291043|ref|YP_008877375.1|	-	0.00038	21.0	0.0	0.00077	20.0	0.0	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
ADH_zinc_N	PF00107.26	gi|564291043|ref|YP_008877375.1|	-	0.011	15.7	0.1	0.24	11.4	0.0	2.5	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
AdoHcyase_NAD	PF00670.21	gi|564291043|ref|YP_008877375.1|	-	0.022	14.8	0.5	0.075	13.1	0.1	1.9	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|564291043|ref|YP_008877375.1|	-	0.028	14.3	0.1	0.049	13.5	0.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.18	gi|564291043|ref|YP_008877375.1|	-	0.094	13.0	0.2	0.19	12.0	0.2	1.7	1	1	0	1	1	1	0	TrkA-N	domain
CT47	PF15623.6	gi|564291043|ref|YP_008877375.1|	-	0.12	12.2	0.2	0.19	11.6	0.2	1.2	1	0	0	1	1	1	0	Cancer/testis	gene	family	47
NAD_binding_7	PF13241.6	gi|564291043|ref|YP_008877375.1|	-	0.13	12.7	0.1	0.3	11.5	0.1	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
TauE	PF01925.19	gi|564291045|ref|YP_008877377.1|	-	5.4e-30	104.8	20.1	5.4e-30	104.8	20.1	1.7	2	1	0	2	2	2	1	Sulfite	exporter	TauE/SafE
Usp	PF00582.26	gi|564291046|ref|YP_008877378.1|	-	8.8e-33	113.8	0.4	1e-32	113.6	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
HPP	PF04982.13	gi|564291047|ref|YP_008877379.1|	-	3.4e-13	49.8	10.5	5.4e-13	49.2	10.5	1.3	1	0	0	1	1	1	1	HPP	family
DUF2162	PF09930.9	gi|564291047|ref|YP_008877379.1|	-	0.24	10.8	11.0	0.044	13.2	7.4	1.6	2	1	0	2	2	2	0	Predicted	transporter	(DUF2162)
GPDPase_memb	PF10110.9	gi|564291048|ref|YP_008877380.1|	-	5e-08	32.1	1.7	5e-08	32.1	1.7	2.1	1	1	1	2	2	2	1	Membrane	domain	of	glycerophosphoryl	diester	phosphodiesterase
DUF975	PF06161.11	gi|564291048|ref|YP_008877380.1|	-	0.00021	21.2	4.3	0.00021	21.2	4.3	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF975)
UPF0259	PF06790.11	gi|564291048|ref|YP_008877380.1|	-	0.0081	16.0	1.9	0.0081	16.0	1.9	1.9	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0259)
EMP70	PF02990.16	gi|564291048|ref|YP_008877380.1|	-	2.6	6.6	16.5	0.074	11.7	10.7	1.3	2	0	0	2	2	2	0	Endomembrane	protein	70
Thioredoxin	PF00085.20	gi|564291049|ref|YP_008877381.1|	-	2e-09	37.4	0.0	2.5e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564291049|ref|YP_008877381.1|	-	9.3e-07	29.3	0.0	1.9e-05	25.1	0.0	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|564291049|ref|YP_008877381.1|	-	0.00049	20.1	0.1	0.0011	18.9	0.0	1.6	2	0	0	2	2	2	1	Thioredoxin	domain
Disulph_isomer	PF06491.11	gi|564291049|ref|YP_008877381.1|	-	0.013	15.6	0.2	0.021	15.0	0.2	1.3	1	1	0	1	1	1	0	Disulphide	isomerase
HyaE	PF07449.11	gi|564291049|ref|YP_008877381.1|	-	0.036	14.0	0.5	0.21	11.6	0.5	1.9	1	1	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
OST3_OST6	PF04756.13	gi|564291049|ref|YP_008877381.1|	-	0.15	11.3	0.0	0.25	10.7	0.0	1.3	1	1	0	1	1	1	0	OST3	/	OST6	family,	transporter	family
Mac	PF12464.8	gi|564291050|ref|YP_008877382.1|	-	3.3e-20	72.1	0.1	6.4e-20	71.1	0.0	1.5	2	0	0	2	2	2	1	Maltose	acetyltransferase
Hexapep	PF00132.24	gi|564291050|ref|YP_008877382.1|	-	4.3e-13	48.4	15.6	7.5e-11	41.3	4.2	3.7	4	1	0	4	4	4	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.6	gi|564291050|ref|YP_008877382.1|	-	5.2e-12	45.3	19.3	2.6e-10	39.9	4.0	4.1	5	0	0	5	5	5	2	Hexapeptide	repeat	of	succinyl-transferase
DUF460	PF04312.13	gi|564291051|ref|YP_008877383.1|	-	5.4e-47	159.0	0.7	1.3e-46	157.9	0.3	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF460)
FAM76	PF16046.5	gi|564291051|ref|YP_008877383.1|	-	0.00046	19.6	8.3	0.00077	18.9	8.3	1.3	1	0	0	1	1	1	1	FAM76	protein
acVLRF1	PF18859.1	gi|564291051|ref|YP_008877383.1|	-	0.00085	19.6	2.8	0.00085	19.6	2.8	4.3	4	2	1	5	5	4	1	Actinobacteria/chloroflexi	VLRF1	release	factor
DUF4407	PF14362.6	gi|564291051|ref|YP_008877383.1|	-	0.005	16.2	11.2	0.005	16.2	11.2	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4407)
DUF4200	PF13863.6	gi|564291051|ref|YP_008877383.1|	-	0.0056	17.1	2.8	0.0056	17.1	2.8	3.2	2	1	1	3	3	3	1	Domain	of	unknown	function	(DUF4200)
DUF3863	PF12979.7	gi|564291051|ref|YP_008877383.1|	-	0.026	13.4	0.0	0.049	12.5	0.0	1.4	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3863)
DASH_Spc34	PF08657.10	gi|564291051|ref|YP_008877383.1|	-	0.037	13.8	7.6	0.095	12.5	7.6	1.8	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
BtrH_N	PF14399.6	gi|564291051|ref|YP_008877383.1|	-	0.1	12.9	0.1	18	5.6	0.0	3.1	3	0	0	3	3	3	0	Butirosin	biosynthesis	protein	H,	N-terminal
COG5	PF10392.9	gi|564291051|ref|YP_008877383.1|	-	0.22	11.7	4.1	0.26	11.4	2.9	1.7	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
ADIP	PF11559.8	gi|564291051|ref|YP_008877383.1|	-	0.23	11.5	19.6	0.14	12.2	11.0	2.5	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
DUF536	PF04394.14	gi|564291051|ref|YP_008877383.1|	-	0.25	11.2	3.4	0.91	9.4	3.4	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF536
Laminin_II	PF06009.12	gi|564291051|ref|YP_008877383.1|	-	0.28	11.2	8.1	1.1	9.3	7.7	2.2	2	0	0	2	2	2	0	Laminin	Domain	II
Exonuc_VII_L	PF02601.15	gi|564291051|ref|YP_008877383.1|	-	0.31	10.6	10.1	0.83	9.2	10.1	1.8	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
V_ATPase_I	PF01496.19	gi|564291051|ref|YP_008877383.1|	-	0.61	7.9	5.3	0.88	7.4	5.3	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
ZapB	PF06005.12	gi|564291051|ref|YP_008877383.1|	-	0.67	10.4	16.2	0.3	11.6	2.9	2.9	2	0	0	2	2	2	0	Cell	division	protein	ZapB
PI3K_P85_iSH2	PF16454.5	gi|564291051|ref|YP_008877383.1|	-	0.78	9.3	14.8	0.28	10.8	9.0	2.4	1	1	1	2	2	2	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
ABC_tran_CTD	PF16326.5	gi|564291051|ref|YP_008877383.1|	-	0.91	9.8	24.9	0.21	11.8	5.1	4.3	4	0	0	4	4	4	0	ABC	transporter	C-terminal	domain
SlyX	PF04102.12	gi|564291051|ref|YP_008877383.1|	-	1.2	9.8	15.1	0.58	10.8	1.6	3.4	2	1	1	3	3	2	0	SlyX
TMF_DNA_bd	PF12329.8	gi|564291051|ref|YP_008877383.1|	-	1.3	9.1	22.6	0.66	10.0	1.3	2.8	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
FapA	PF03961.13	gi|564291051|ref|YP_008877383.1|	-	1.7	7.1	8.1	2.9	6.4	8.1	1.3	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Atg14	PF10186.9	gi|564291051|ref|YP_008877383.1|	-	3	6.9	19.4	5.5	6.0	8.2	2.3	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
UPF0242	PF06785.11	gi|564291051|ref|YP_008877383.1|	-	3.2	7.8	14.6	8.4	6.4	14.6	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
PAS_4	PF08448.10	gi|564291052|ref|YP_008877384.1|	-	9.8e-17	61.2	0.4	2.4e-16	59.9	0.4	1.7	1	0	0	1	1	1	1	PAS	fold
HATPase_c	PF02518.26	gi|564291052|ref|YP_008877384.1|	-	2.4e-16	60.3	0.0	8.6e-16	58.4	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|564291052|ref|YP_008877384.1|	-	3.4e-13	49.6	0.0	1e-12	48.0	0.0	1.8	2	0	0	2	2	2	1	PAS	fold
HisKA	PF00512.25	gi|564291052|ref|YP_008877384.1|	-	3.4e-10	39.8	1.3	6.3e-10	38.9	1.3	1.5	1	0	0	1	1	1	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|564291052|ref|YP_008877384.1|	-	1.4e-09	38.1	0.0	3e-09	37.1	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS_3	PF08447.12	gi|564291052|ref|YP_008877384.1|	-	5.2e-07	29.9	0.0	1.3e-06	28.6	0.0	1.7	1	0	0	1	1	1	1	PAS	fold
PAS_7	PF12860.7	gi|564291052|ref|YP_008877384.1|	-	6.3e-05	23.1	0.1	0.00019	21.5	0.1	1.9	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564291052|ref|YP_008877384.1|	-	0.0058	16.6	0.1	0.021	14.9	0.1	2.0	1	0	0	1	1	1	1	PAS	domain
PAS_5	PF07310.13	gi|564291052|ref|YP_008877384.1|	-	0.01	15.6	0.2	0.12	12.1	0.0	2.4	2	1	0	2	2	2	0	PAS	domain
HATPase_c_2	PF13581.6	gi|564291052|ref|YP_008877384.1|	-	0.015	15.3	2.0	0.018	15.0	0.1	2.1	3	0	0	3	3	3	0	Histidine	kinase-like	ATPase	domain
ApoO	PF09769.9	gi|564291052|ref|YP_008877384.1|	-	0.073	13.0	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	Apolipoprotein	O
HATPase_c_3	PF13589.6	gi|564291052|ref|YP_008877384.1|	-	0.11	12.4	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF4418	PF14387.6	gi|564291053|ref|YP_008877385.1|	-	0.58	10.4	4.9	0.71	10.1	4.9	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4418)
SCP2	PF02036.17	gi|564291054|ref|YP_008877386.1|	-	5e-10	39.8	0.0	6.7e-10	39.4	0.0	1.2	1	0	0	1	1	1	1	SCP-2	sterol	transfer	family
ABC_tran	PF00005.27	gi|564291055|ref|YP_008877387.1|	-	1.6e-30	106.4	0.0	2.2e-30	105.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564291055|ref|YP_008877387.1|	-	6.9e-12	45.8	0.0	6.5e-05	22.9	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564291055|ref|YP_008877387.1|	-	0.00062	19.3	0.0	0.038	13.4	0.0	2.2	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|564291055|ref|YP_008877387.1|	-	0.0018	18.6	0.1	0.02	15.2	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564291055|ref|YP_008877387.1|	-	0.0023	17.8	0.0	0.0047	16.9	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_15	PF13175.6	gi|564291055|ref|YP_008877387.1|	-	0.0024	17.7	0.0	0.043	13.5	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564291055|ref|YP_008877387.1|	-	0.0032	17.2	0.1	0.0059	16.3	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564291055|ref|YP_008877387.1|	-	0.0045	17.5	0.0	0.0064	17.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564291055|ref|YP_008877387.1|	-	0.0049	16.6	0.3	0.011	15.4	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.29	gi|564291055|ref|YP_008877387.1|	-	0.0052	17.2	0.1	0.72	10.3	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|564291055|ref|YP_008877387.1|	-	0.013	15.1	0.0	0.024	14.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|564291055|ref|YP_008877387.1|	-	0.021	15.2	0.1	0.043	14.2	0.1	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.14	gi|564291055|ref|YP_008877387.1|	-	0.064	13.3	0.0	0.15	12.1	0.0	1.7	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|564291055|ref|YP_008877387.1|	-	0.11	12.6	0.0	0.17	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|564291056|ref|YP_008877388.1|	-	1.3e-30	106.6	0.0	1.7e-30	106.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564291056|ref|YP_008877388.1|	-	1.2e-12	48.3	1.5	2.2e-06	27.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
BCA_ABC_TP_C	PF12399.8	gi|564291056|ref|YP_008877388.1|	-	3e-09	36.6	0.2	6.6e-09	35.5	0.2	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.19	gi|564291056|ref|YP_008877388.1|	-	0.00012	21.6	0.3	0.0032	16.9	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564291056|ref|YP_008877388.1|	-	0.00041	20.0	0.0	0.00097	18.8	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564291056|ref|YP_008877388.1|	-	0.00093	19.7	1.4	0.00097	19.7	0.3	1.5	2	0	0	2	2	2	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564291056|ref|YP_008877388.1|	-	0.019	14.9	0.1	0.043	13.7	0.0	1.6	2	0	0	2	2	2	0	RsgA	GTPase
AAA_15	PF13175.6	gi|564291056|ref|YP_008877388.1|	-	0.049	13.3	0.0	0.12	12.0	0.0	1.6	2	0	0	2	2	2	0	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|564291056|ref|YP_008877388.1|	-	0.092	12.8	0.0	0.18	11.9	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
ABC_ATPase	PF09818.9	gi|564291056|ref|YP_008877388.1|	-	0.14	10.9	0.3	6	5.5	0.0	2.1	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.6	gi|564291056|ref|YP_008877388.1|	-	0.15	11.7	0.0	0.18	11.5	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|564291056|ref|YP_008877388.1|	-	0.18	12.1	0.0	0.3	11.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
BPD_transp_2	PF02653.16	gi|564291057|ref|YP_008877389.1|	-	6e-48	163.3	34.5	6e-48	163.3	34.5	1.9	1	1	1	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
Coa1	PF08695.10	gi|564291057|ref|YP_008877389.1|	-	0.031	14.0	0.1	0.064	13.0	0.1	1.5	1	0	0	1	1	1	0	Cytochrome	oxidase	complex	assembly	protein	1
DUF4083	PF13314.6	gi|564291057|ref|YP_008877389.1|	-	0.34	10.9	0.2	0.34	10.9	0.2	2.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4083)
BPD_transp_2	PF02653.16	gi|564291058|ref|YP_008877390.1|	-	1.9e-45	155.1	39.1	2.2e-45	154.9	39.1	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.6	gi|564291059|ref|YP_008877391.1|	-	3.2e-42	145.4	6.3	4.7e-42	144.9	6.3	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.28	gi|564291059|ref|YP_008877391.1|	-	1.4e-27	96.7	0.0	1.9e-27	96.3	0.0	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.6	gi|564291059|ref|YP_008877391.1|	-	1.4e-07	30.9	2.7	1.2e-05	24.5	0.5	2.2	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|564291059|ref|YP_008877391.1|	-	0.0042	16.9	1.3	0.0098	15.7	1.3	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Pro_racemase	PF05544.11	gi|564291060|ref|YP_008877392.1|	-	4.3e-75	252.8	3.2	5.3e-75	252.5	3.2	1.0	1	0	0	1	1	1	1	Proline	racemase
DAP_epimerase	PF01678.19	gi|564291060|ref|YP_008877392.1|	-	4.5e-07	30.1	2.3	3.1e-05	24.1	0.1	2.5	2	0	0	2	2	2	2	Diaminopimelate	epimerase
PhzC-PhzF	PF02567.16	gi|564291060|ref|YP_008877392.1|	-	0.00063	19.3	0.3	0.0013	18.3	0.0	1.6	2	0	0	2	2	2	1	Phenazine	biosynthesis-like	protein
PG_binding_4	PF12229.8	gi|564291060|ref|YP_008877392.1|	-	0.057	13.7	0.0	0.1	12.9	0.0	1.4	1	0	0	1	1	1	0	Putative	peptidoglycan	binding	domain
Pro_dh	PF01619.18	gi|564291061|ref|YP_008877393.1|	-	3e-27	95.9	0.0	5.6e-27	95.0	0.0	1.4	1	1	0	1	1	1	1	Proline	dehydrogenase
HTH_10	PF04967.12	gi|564291062|ref|YP_008877394.1|	-	3e-16	58.9	0.1	4.8e-16	58.3	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.6	gi|564291062|ref|YP_008877394.1|	-	8.1e-05	22.1	0.1	0.0002	20.9	0.1	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_1_2	PF13022.6	gi|564291062|ref|YP_008877394.1|	-	0.0001	22.5	0.1	0.00021	21.4	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
HTH_psq	PF05225.16	gi|564291062|ref|YP_008877394.1|	-	0.00057	19.6	0.0	0.0011	18.7	0.0	1.5	1	0	0	1	1	1	1	helix-turn-helix,	Psq	domain
HTH_50	PF18024.1	gi|564291062|ref|YP_008877394.1|	-	0.00077	19.0	0.0	0.0015	18.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|564291062|ref|YP_008877394.1|	-	0.00087	18.9	2.3	0.013	15.2	2.3	2.3	1	1	0	1	1	1	1	Sigma-70,	region	4
HTH_36	PF13730.6	gi|564291062|ref|YP_008877394.1|	-	0.0077	16.2	0.0	0.017	15.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|564291062|ref|YP_008877394.1|	-	0.015	15.2	0.0	0.038	13.9	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
TetR_N	PF00440.23	gi|564291062|ref|YP_008877394.1|	-	0.037	13.8	0.0	0.32	10.8	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
HTH_5	PF01022.20	gi|564291062|ref|YP_008877394.1|	-	0.038	13.8	0.1	0.089	12.7	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|564291062|ref|YP_008877394.1|	-	0.049	13.3	0.1	0.1	12.2	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_38	PF13936.6	gi|564291062|ref|YP_008877394.1|	-	0.063	13.0	0.4	0.29	10.9	0.4	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.7	gi|564291062|ref|YP_008877394.1|	-	0.065	13.3	0.1	0.24	11.5	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|564291062|ref|YP_008877394.1|	-	0.073	12.9	1.0	0.11	12.3	0.0	1.8	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Aldedh	PF00171.22	gi|564291063|ref|YP_008877395.1|	-	1.9e-143	478.4	0.0	2.4e-143	478.0	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
OmdA	PF13376.6	gi|564291063|ref|YP_008877395.1|	-	0.063	13.3	0.6	0.15	12.1	0.6	1.5	1	0	0	1	1	1	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
LuxC	PF05893.14	gi|564291063|ref|YP_008877395.1|	-	0.2	10.7	0.0	0.37	9.8	0.0	1.3	1	0	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
DUF5351	PF17302.2	gi|564291402|ref|YP_008877396.1|	-	3.3	8.0	7.8	5.2	7.3	1.7	2.3	2	0	0	2	2	2	0	Family	of	unknown	function	(DUF5351)
eIF-1a	PF01176.19	gi|564291064|ref|YP_008877397.1|	-	1.1e-24	86.0	0.8	1.4e-24	85.7	0.8	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
RIO1	PF01163.22	gi|564291065|ref|YP_008877398.1|	-	4.8e-60	202.4	0.2	1.2e-59	201.1	0.0	1.6	2	0	0	2	2	2	1	RIO1	family
APH	PF01636.23	gi|564291065|ref|YP_008877398.1|	-	6.4e-07	29.5	2.6	1.8e-05	24.8	0.1	2.8	2	1	1	3	3	3	2	Phosphotransferase	enzyme	family
Kdo	PF06293.14	gi|564291065|ref|YP_008877398.1|	-	4e-05	23.1	0.1	0.0003	20.2	0.1	2.0	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Pkinase	PF00069.25	gi|564291065|ref|YP_008877398.1|	-	0.00043	19.7	0.0	0.0015	18.0	0.0	1.7	2	0	0	2	2	2	1	Protein	kinase	domain
Pkinase_fungal	PF17667.1	gi|564291065|ref|YP_008877398.1|	-	0.004	16.0	0.0	0.0059	15.4	0.0	1.3	1	0	0	1	1	1	1	Fungal	protein	kinase
HATPase_c	PF02518.26	gi|564291066|ref|YP_008877399.1|	-	1.2e-14	54.7	0.1	2.5e-14	53.7	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564291066|ref|YP_008877399.1|	-	4.4e-10	39.5	0.9	1.1e-09	38.2	0.6	1.9	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|564291066|ref|YP_008877399.1|	-	1e-09	38.6	0.0	2.3e-09	37.4	0.0	1.6	1	0	0	1	1	1	1	PAS	domain
PAS_4	PF08448.10	gi|564291066|ref|YP_008877399.1|	-	6.7e-08	32.8	0.1	1.3e-07	31.8	0.1	1.5	1	0	0	1	1	1	1	PAS	fold
PAS	PF00989.25	gi|564291066|ref|YP_008877399.1|	-	1.8e-06	28.0	0.0	3.4e-06	27.0	0.0	1.5	1	0	0	1	1	1	1	PAS	fold
PMC2NT	PF08066.12	gi|564291066|ref|YP_008877399.1|	-	0.37	11.5	0.1	0.37	11.5	0.1	3.1	4	1	1	5	5	5	0	PMC2NT	(NUC016)	domain
KH_1	PF00013.29	gi|564291067|ref|YP_008877400.1|	-	6.6e-14	51.5	1.3	1.3e-07	31.4	0.1	2.3	2	0	0	2	2	2	2	KH	domain
KH_2	PF07650.17	gi|564291067|ref|YP_008877400.1|	-	0.00015	21.5	4.8	0.0042	16.9	0.2	2.7	2	1	1	3	3	3	2	KH	domain
KH_8	PF17903.1	gi|564291067|ref|YP_008877400.1|	-	0.0008	19.5	0.0	0.0013	18.8	0.0	1.3	1	0	0	1	1	1	1	Krr1	KH1	domain
KH_4	PF13083.6	gi|564291067|ref|YP_008877400.1|	-	0.096	12.6	8.0	2	8.4	0.4	3.3	2	1	1	3	3	3	0	KH	domain
FHA_2	PF17913.1	gi|564291067|ref|YP_008877400.1|	-	0.14	12.4	0.0	0.23	11.7	0.0	1.3	1	0	0	1	1	1	0	FHA	domain
4HBT	PF03061.22	gi|564291068|ref|YP_008877401.1|	-	9.1e-17	61.2	0.1	1.3e-16	60.7	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
Acyl-ACP_TE	PF01643.17	gi|564291068|ref|YP_008877401.1|	-	0.057	12.7	0.0	0.065	12.5	0.0	1.1	1	0	0	1	1	1	0	Acyl-ACP	thioesterase
4HBT_2	PF13279.6	gi|564291068|ref|YP_008877401.1|	-	0.13	12.7	0.0	0.15	12.6	0.0	1.1	1	0	0	1	1	1	0	Thioesterase-like	superfamily
DUF5357	PF17310.2	gi|564291069|ref|YP_008877402.1|	-	0.0089	14.6	0.2	0.01	14.4	0.2	1.0	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF5357)
DUF4191	PF13829.6	gi|564291069|ref|YP_008877402.1|	-	0.12	11.7	0.9	0.13	11.6	0.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
FUSC	PF04632.12	gi|564291069|ref|YP_008877402.1|	-	1.6	7.2	6.4	1.9	6.9	6.4	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
ECH_1	PF00378.20	gi|564291073|ref|YP_008877406.1|	-	1.2e-37	129.6	0.4	1.4e-37	129.4	0.4	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
ECH_2	PF16113.5	gi|564291073|ref|YP_008877406.1|	-	6.7e-25	88.3	0.3	7.9e-25	88.0	0.3	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase
DUF3105	PF11303.8	gi|564291074|ref|YP_008877407.1|	-	2.7e-30	105.1	0.1	3.8e-30	104.7	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3105)
zf-HC2	PF13490.6	gi|564291074|ref|YP_008877407.1|	-	0.013	15.7	1.3	0.013	15.7	1.3	2.1	2	0	0	2	2	2	0	Putative	zinc-finger
DUF3437	PF11919.8	gi|564291074|ref|YP_008877407.1|	-	0.092	12.7	0.0	0.16	11.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3437)
zf-C2H2_4	PF13894.6	gi|564291074|ref|YP_008877407.1|	-	0.12	13.3	0.0	0.27	12.2	0.0	1.6	1	0	0	1	1	1	0	C2H2-type	zinc	finger
NAD_synthase	PF02540.17	gi|564291075|ref|YP_008877408.1|	-	1.6e-76	256.7	0.0	2e-76	256.3	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.16	gi|564291075|ref|YP_008877408.1|	-	2.6e-05	23.2	0.0	0.045	12.5	0.0	2.7	3	0	0	3	3	3	2	tRNA	methyl	transferase
LPD22	PF18834.1	gi|564291075|ref|YP_008877408.1|	-	0.00028	21.0	0.4	2.7	8.3	0.0	3.1	3	0	0	3	3	3	2	Large	polyvalent	protein	associated	domain	22
Asn_synthase	PF00733.21	gi|564291075|ref|YP_008877408.1|	-	0.0024	17.6	0.1	0.0047	16.6	0.1	1.3	1	1	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.13	gi|564291075|ref|YP_008877408.1|	-	0.04	13.4	0.0	0.28	10.7	0.0	2.0	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
DZR	PF12773.7	gi|564291076|ref|YP_008877409.1|	-	0.016	15.3	0.7	0.019	15.0	0.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564291076|ref|YP_008877409.1|	-	0.027	13.9	0.6	0.13	11.7	0.1	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.10	gi|564291076|ref|YP_008877409.1|	-	0.029	14.1	0.2	0.04	13.6	0.2	1.1	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
MCR	PF18509.1	gi|564291076|ref|YP_008877409.1|	-	0.032	13.8	0.6	0.032	13.8	0.6	1.6	2	0	0	2	2	2	0	Magnetochrome	domain
OrfB_Zn_ribbon	PF07282.11	gi|564291076|ref|YP_008877409.1|	-	0.077	12.9	0.3	0.082	12.9	0.3	1.1	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-Mss51	PF13824.6	gi|564291076|ref|YP_008877409.1|	-	0.094	12.8	2.8	0.28	11.3	2.8	1.8	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TPX2_importin	PF12214.8	gi|564291076|ref|YP_008877409.1|	-	0.15	12.3	0.0	0.17	12.0	0.0	1.0	1	0	0	1	1	1	0	Cell	cycle	regulated	microtubule	associated	protein
Zn-ribbon_8	PF09723.10	gi|564291076|ref|YP_008877409.1|	-	0.77	9.9	5.1	5.5	7.2	0.4	2.1	1	1	0	2	2	2	0	Zinc	ribbon	domain
Rep_fac_C	PF08542.11	gi|564291077|ref|YP_008877410.1|	-	3.7e-15	56.1	0.2	8.6e-15	54.9	0.2	1.7	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
DNA_pol3_delta2	PF13177.6	gi|564291077|ref|YP_008877410.1|	-	1.1e-13	51.2	0.0	1.8e-13	50.6	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA	PF00004.29	gi|564291077|ref|YP_008877410.1|	-	1.1e-09	38.8	0.0	3.4e-09	37.2	0.0	1.9	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.6	gi|564291077|ref|YP_008877410.1|	-	2.4e-07	31.1	0.0	6.5e-07	29.7	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|564291077|ref|YP_008877410.1|	-	4.7e-07	30.4	0.2	4.1e-06	27.3	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
Sigma54_activat	PF00158.26	gi|564291077|ref|YP_008877410.1|	-	0.00011	22.0	0.1	0.0035	17.0	0.0	2.7	3	0	0	3	3	3	1	Sigma-54	interaction	domain
AAA_14	PF13173.6	gi|564291077|ref|YP_008877410.1|	-	0.00047	20.2	0.0	0.0026	17.8	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
T2SSE	PF00437.20	gi|564291077|ref|YP_008877410.1|	-	0.0013	17.8	0.0	0.0032	16.6	0.0	1.6	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
TniB	PF05621.11	gi|564291077|ref|YP_008877410.1|	-	0.0032	16.9	0.0	0.0075	15.7	0.0	1.6	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA_11	PF13086.6	gi|564291077|ref|YP_008877410.1|	-	0.0067	16.2	0.0	0.031	14.1	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
TIP49	PF06068.13	gi|564291077|ref|YP_008877410.1|	-	0.0085	15.3	0.0	0.014	14.6	0.0	1.3	1	0	0	1	1	1	1	TIP49	P-loop	domain
Mg_chelatase	PF01078.21	gi|564291077|ref|YP_008877410.1|	-	0.013	14.9	0.0	0.02	14.3	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
FtsK_SpoIIIE	PF01580.18	gi|564291077|ref|YP_008877410.1|	-	0.014	14.7	0.0	0.055	12.8	0.0	1.9	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
Tnp_P_element_C	PF12596.8	gi|564291077|ref|YP_008877410.1|	-	0.016	15.7	0.3	0.052	14.1	0.0	2.0	1	1	1	2	2	2	0	87kDa	Transposase
NACHT	PF05729.12	gi|564291077|ref|YP_008877410.1|	-	0.021	14.8	0.0	0.047	13.6	0.0	1.6	1	1	0	1	1	1	0	NACHT	domain
DEAD	PF00270.29	gi|564291077|ref|YP_008877410.1|	-	0.022	14.5	0.0	3.5	7.4	0.0	2.4	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_24	PF13479.6	gi|564291077|ref|YP_008877410.1|	-	0.025	14.3	0.0	0.055	13.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564291077|ref|YP_008877410.1|	-	0.045	13.7	0.0	0.081	12.8	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_7	PF12775.7	gi|564291077|ref|YP_008877410.1|	-	0.076	12.5	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Zeta_toxin	PF06414.12	gi|564291077|ref|YP_008877410.1|	-	0.076	12.3	0.0	0.29	10.4	0.0	1.9	2	0	0	2	2	2	0	Zeta	toxin
AAA_assoc_2	PF16193.5	gi|564291077|ref|YP_008877410.1|	-	0.081	13.3	0.5	0.24	11.8	0.5	1.9	1	1	0	1	1	1	0	AAA	C-terminal	domain
Rad17	PF03215.15	gi|564291077|ref|YP_008877410.1|	-	0.14	12.1	0.0	0.24	11.3	0.0	1.5	1	1	0	1	1	1	0	Rad17	P-loop	domain
AAA_18	PF13238.6	gi|564291077|ref|YP_008877410.1|	-	0.16	12.5	0.0	1.4	9.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.22	gi|564291077|ref|YP_008877410.1|	-	0.18	12.2	0.0	0.46	10.9	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
Ribosomal_S24e	PF01282.19	gi|564291078|ref|YP_008877411.1|	-	4.1e-27	93.9	0.2	5.3e-27	93.6	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S24e
Baculo_E25	PF05274.11	gi|564291078|ref|YP_008877411.1|	-	0.13	12.1	0.0	0.14	12.0	0.0	1.1	1	0	0	1	1	1	0	Occlusion-derived	virus	envelope	protein	E25
Ribosomal_S27	PF01599.19	gi|564291079|ref|YP_008877412.1|	-	1e-10	41.6	3.5	1.2e-10	41.3	3.5	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
Ribosomal_L37e	PF01907.19	gi|564291079|ref|YP_008877412.1|	-	0.0017	18.5	0.7	0.0021	18.2	0.7	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L37e
DZR	PF12773.7	gi|564291079|ref|YP_008877412.1|	-	0.0025	17.8	0.7	0.0032	17.4	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Nudix_N_2	PF14803.6	gi|564291079|ref|YP_008877412.1|	-	0.019	14.9	8.2	0.64	10.0	0.9	2.1	1	1	1	2	2	2	0	Nudix	N-terminal
RNHCP	PF12647.7	gi|564291079|ref|YP_008877412.1|	-	0.022	14.7	1.1	0.027	14.5	1.1	1.2	1	0	0	1	1	1	0	RNHCP	domain
RNA_POL_M_15KD	PF02150.16	gi|564291079|ref|YP_008877412.1|	-	0.022	14.6	1.3	0.039	13.8	1.3	1.3	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.6	gi|564291079|ref|YP_008877412.1|	-	0.028	13.8	5.4	0.13	11.8	5.4	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
Auto_anti-p27	PF06677.12	gi|564291079|ref|YP_008877412.1|	-	0.052	13.7	1.4	0.074	13.2	1.4	1.3	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
OrfB_Zn_ribbon	PF07282.11	gi|564291079|ref|YP_008877412.1|	-	0.068	13.1	2.8	0.096	12.6	2.8	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
DNA_RNApol_7kD	PF03604.13	gi|564291079|ref|YP_008877412.1|	-	0.069	12.8	2.8	0.092	12.4	2.8	1.2	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
CpXC	PF14353.6	gi|564291079|ref|YP_008877412.1|	-	0.11	12.6	2.7	0.15	12.1	0.1	1.9	1	1	1	2	2	2	0	CpXC	protein
zf-NADH-PPase	PF09297.11	gi|564291079|ref|YP_008877412.1|	-	0.12	12.1	5.3	2.4	7.9	5.3	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Fer4_2	PF12797.7	gi|564291079|ref|YP_008877412.1|	-	0.13	12.4	3.3	2.8	8.2	0.4	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Zn_Tnp_IS1595	PF12760.7	gi|564291079|ref|YP_008877412.1|	-	0.13	12.2	4.6	0.29	11.1	4.7	1.5	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
HypA	PF01155.19	gi|564291079|ref|YP_008877412.1|	-	0.14	12.2	1.4	0.15	12.1	1.4	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
NOB1_Zn_bind	PF08772.11	gi|564291079|ref|YP_008877412.1|	-	0.19	11.9	3.2	4.9	7.4	0.1	2.0	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc_ribbon_2	PF13240.6	gi|564291079|ref|YP_008877412.1|	-	0.75	9.6	7.7	8	6.3	7.7	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
zf_UBZ	PF18439.1	gi|564291079|ref|YP_008877412.1|	-	0.99	9.1	8.0	0.16	11.5	1.8	2.4	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Zn-ribbon_8	PF09723.10	gi|564291079|ref|YP_008877412.1|	-	1.8	8.8	7.3	42	4.4	7.3	2.2	1	1	0	1	1	1	0	Zinc	ribbon	domain
UPF0547	PF10571.9	gi|564291079|ref|YP_008877412.1|	-	4.4	7.5	7.7	40	4.4	7.7	2.1	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
Peptidase_M22	PF00814.25	gi|564291080|ref|YP_008877413.1|	-	9.4e-71	238.7	0.0	1.5e-70	238.0	0.0	1.3	1	0	0	1	1	1	1	Glycoprotease	family
Kdo	PF06293.14	gi|564291080|ref|YP_008877413.1|	-	3.3e-05	23.3	0.0	8.4e-05	22.0	0.0	1.6	1	1	1	2	2	2	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Ham1p_like	PF01725.16	gi|564291082|ref|YP_008877415.1|	-	6.6e-53	179.4	0.1	1.2e-52	178.6	0.1	1.4	1	1	0	1	1	1	1	Ham1	family
adh_short	PF00106.25	gi|564291083|ref|YP_008877416.1|	-	1.9e-47	161.3	0.0	2.7e-47	160.8	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.6	gi|564291083|ref|YP_008877416.1|	-	6.6e-31	107.7	0.3	8.3e-31	107.3	0.3	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.10	gi|564291083|ref|YP_008877416.1|	-	8.3e-12	45.4	0.0	1.1e-11	44.9	0.0	1.1	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.6	gi|564291083|ref|YP_008877416.1|	-	1.7e-06	28.0	0.7	0.00042	20.3	0.7	2.2	2	0	0	2	2	2	1	NAD(P)H-binding
Glyco_transf_4	PF13439.6	gi|564291083|ref|YP_008877416.1|	-	2.7e-05	24.2	1.5	0.07	13.1	0.4	2.7	2	1	0	2	2	2	2	Glycosyltransferase	Family	4
HEM4	PF02602.15	gi|564291083|ref|YP_008877416.1|	-	0.00022	20.6	0.6	0.013	14.8	0.1	2.1	2	0	0	2	2	2	1	Uroporphyrinogen-III	synthase	HemD
Glyco_trans_4_4	PF13579.6	gi|564291083|ref|YP_008877416.1|	-	0.00024	21.6	6.5	0.025	15.0	0.3	2.8	2	1	0	2	2	2	2	Glycosyl	transferase	4-like	domain
Epimerase	PF01370.21	gi|564291083|ref|YP_008877416.1|	-	0.0012	18.4	0.3	0.0023	17.4	0.3	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
F420_oxidored	PF03807.17	gi|564291083|ref|YP_008877416.1|	-	0.0017	18.9	1.0	0.0042	17.6	0.2	2.0	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|564291083|ref|YP_008877416.1|	-	0.0021	18.3	0.2	0.05	13.9	0.0	2.4	2	0	0	2	2	2	1	TrkA-N	domain
Sacchrp_dh_NADP	PF03435.18	gi|564291083|ref|YP_008877416.1|	-	0.0022	18.3	0.2	0.0049	17.1	0.2	1.6	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NmrA	PF05368.13	gi|564291083|ref|YP_008877416.1|	-	0.0035	16.9	0.5	0.013	15.1	0.2	1.8	2	0	0	2	2	2	1	NmrA-like	family
3HCDH_N	PF02737.18	gi|564291083|ref|YP_008877416.1|	-	0.0053	16.6	0.1	0.01	15.8	0.1	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DFP	PF04127.15	gi|564291083|ref|YP_008877416.1|	-	0.014	15.2	1.8	0.18	11.6	0.2	2.5	2	1	0	3	3	3	0	DNA	/	pantothenate	metabolism	flavoprotein
Glyco_trans_4_2	PF13477.6	gi|564291083|ref|YP_008877416.1|	-	0.026	14.6	0.0	6.9	6.7	0.0	2.3	2	0	0	2	2	2	0	Glycosyl	transferase	4-like
ADH_zinc_N	PF00107.26	gi|564291083|ref|YP_008877416.1|	-	0.056	13.4	0.5	3	7.8	0.2	2.5	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
Polysacc_synt_2	PF02719.15	gi|564291083|ref|YP_008877416.1|	-	0.065	12.3	0.0	0.09	11.9	0.0	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Fimbrial	PF00419.20	gi|564291083|ref|YP_008877416.1|	-	0.091	13.0	0.0	0.16	12.2	0.0	1.4	1	0	0	1	1	1	0	Fimbrial	protein
ApbA	PF02558.16	gi|564291083|ref|YP_008877416.1|	-	0.095	12.3	0.1	0.25	11.0	0.1	1.7	2	1	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Glyco_transf_5	PF08323.11	gi|564291083|ref|YP_008877416.1|	-	0.12	12.0	0.0	13	5.4	0.0	2.2	2	0	0	2	2	2	0	Starch	synthase	catalytic	domain
MCPsignal	PF00015.21	gi|564291084|ref|YP_008877417.1|	-	7.4e-46	156.1	56.4	1.8e-43	148.3	24.1	4.6	1	1	3	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAMP	PF00672.25	gi|564291084|ref|YP_008877417.1|	-	5.7e-08	33.0	0.1	5.7e-08	33.0	0.1	5.9	4	2	2	6	6	4	1	HAMP	domain
DUF1664	PF07889.12	gi|564291084|ref|YP_008877417.1|	-	2.9e-05	24.1	34.1	0.017	15.2	0.6	5.5	4	1	3	7	7	6	3	Protein	of	unknown	function	(DUF1664)
KxDL	PF10241.9	gi|564291084|ref|YP_008877417.1|	-	4.7e-05	23.6	10.8	1.3	9.4	1.4	5.0	3	2	3	6	6	6	1	Uncharacterized	conserved	protein
Syntaxin-6_N	PF09177.11	gi|564291084|ref|YP_008877417.1|	-	7.6e-05	23.2	33.9	0.22	12.1	12.4	5.3	2	2	3	5	5	5	1	Syntaxin	6,	N-terminal
DUF948	PF06103.11	gi|564291084|ref|YP_008877417.1|	-	8.4e-05	22.8	54.1	0.092	13.0	4.4	6.9	4	2	3	7	7	6	4	Bacterial	protein	of	unknown	function	(DUF948)
TPR_MLP1_2	PF07926.12	gi|564291084|ref|YP_008877417.1|	-	0.00061	19.9	31.5	0.022	14.8	1.3	5.1	3	2	2	5	5	5	2	TPR/MLP1/MLP2-like	protein
Syntaxin_2	PF14523.6	gi|564291084|ref|YP_008877417.1|	-	0.0015	18.9	16.1	0.039	14.3	0.1	5.1	4	2	2	6	6	4	1	Syntaxin-like	protein
Alanine_zipper	PF11839.8	gi|564291084|ref|YP_008877417.1|	-	0.0033	17.8	10.3	0.0033	17.8	10.3	5.3	2	2	4	6	6	5	1	Alanine-zipper,	major	outer	membrane	lipoprotein
AAA_13	PF13166.6	gi|564291084|ref|YP_008877417.1|	-	0.0035	16.1	28.9	0.0089	14.7	8.3	2.2	1	1	1	2	2	2	2	AAA	domain
BLOC1_2	PF10046.9	gi|564291084|ref|YP_008877417.1|	-	0.0049	17.2	30.7	2	8.8	2.4	6.1	3	2	3	6	6	6	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Laminin_II	PF06009.12	gi|564291084|ref|YP_008877417.1|	-	0.0049	16.9	44.3	0.31	11.1	7.8	6.1	2	2	4	6	6	6	3	Laminin	Domain	II
CorA	PF01544.18	gi|564291084|ref|YP_008877417.1|	-	0.0076	15.6	5.2	0.0076	15.6	5.2	3.4	1	1	1	3	3	3	1	CorA-like	Mg2+	transporter	protein
Seryl_tRNA_N	PF02403.22	gi|564291084|ref|YP_008877417.1|	-	0.0093	16.2	27.4	0.4	10.9	1.8	5.7	2	2	5	7	7	7	1	Seryl-tRNA	synthetase	N-terminal	domain
CALCOCO1	PF07888.11	gi|564291084|ref|YP_008877417.1|	-	0.019	13.9	28.1	0.034	13.0	9.4	2.9	2	1	1	3	3	3	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
DUF2203	PF09969.9	gi|564291084|ref|YP_008877417.1|	-	0.02	15.6	30.3	0.18	12.5	4.8	5.2	1	1	3	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
HAUS-augmin3	PF14932.6	gi|564291084|ref|YP_008877417.1|	-	0.027	14.1	22.6	0.72	9.4	0.1	3.4	1	1	1	3	3	3	0	HAUS	augmin-like	complex	subunit	3
TACC_C	PF05010.14	gi|564291084|ref|YP_008877417.1|	-	0.041	13.7	21.9	0.033	14.0	1.2	4.4	2	2	1	3	3	3	0	Transforming	acidic	coiled-coil-containing	protein	(TACC),	C-terminal
Occludin_ELL	PF07303.13	gi|564291084|ref|YP_008877417.1|	-	0.049	14.3	5.8	3.5	8.4	0.0	4.9	4	2	1	6	6	5	0	Occludin	homology	domain
ATG16	PF08614.11	gi|564291084|ref|YP_008877417.1|	-	0.053	13.7	35.4	0.15	12.3	12.7	3.4	4	0	0	4	4	3	0	Autophagy	protein	16	(ATG16)
WXG100	PF06013.12	gi|564291084|ref|YP_008877417.1|	-	0.073	13.3	37.0	2.1	8.6	7.1	7.6	2	1	4	8	8	7	0	Proteins	of	100	residues	with	WXG
NAAA-beta	PF15508.6	gi|564291084|ref|YP_008877417.1|	-	0.11	12.8	0.1	87	3.5	0.0	3.9	3	1	0	3	3	3	0	beta	subunit	of	N-acylethanolamine-hydrolyzing	acid	amidase
Spc7	PF08317.11	gi|564291084|ref|YP_008877417.1|	-	0.13	11.1	33.2	0.32	9.8	3.6	3.6	2	2	3	5	5	5	0	Spc7	kinetochore	protein
COG2	PF06148.11	gi|564291084|ref|YP_008877417.1|	-	0.18	11.9	29.3	0.69	10.0	0.6	5.7	2	2	3	6	6	6	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
RPW8	PF05659.11	gi|564291084|ref|YP_008877417.1|	-	0.38	10.4	8.9	12	5.6	0.0	5.2	3	2	3	6	6	6	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Sec34	PF04136.15	gi|564291084|ref|YP_008877417.1|	-	0.42	10.5	26.1	1.3	8.9	3.2	5.7	4	3	2	6	6	6	0	Sec34-like	family
DUF4200	PF13863.6	gi|564291084|ref|YP_008877417.1|	-	0.55	10.7	19.3	2.2	8.7	2.5	4.7	3	2	2	5	5	5	0	Domain	of	unknown	function	(DUF4200)
Cauli_AT	PF03233.13	gi|564291084|ref|YP_008877417.1|	-	0.73	9.8	14.2	1.3	8.9	0.2	4.4	3	2	2	5	5	5	0	Aphid	transmission	protein
Fib_alpha	PF08702.10	gi|564291084|ref|YP_008877417.1|	-	0.79	9.9	25.3	0.62	10.2	0.8	4.8	2	2	4	6	6	6	0	Fibrinogen	alpha/beta	chain	family
Med30	PF11315.8	gi|564291084|ref|YP_008877417.1|	-	0.82	9.9	8.1	0.81	9.9	3.5	3.1	1	1	2	3	3	3	0	Mediator	complex	subunit	30
MAD	PF05557.13	gi|564291084|ref|YP_008877417.1|	-	1.1	7.6	23.2	0.55	8.5	11.6	2.6	1	1	1	2	2	2	0	Mitotic	checkpoint	protein
RmuC	PF02646.16	gi|564291084|ref|YP_008877417.1|	-	1.2	8.2	25.7	1.7	7.7	0.1	5.4	3	3	3	6	6	6	0	RmuC	family
TRAF_BIRC3_bd	PF16673.5	gi|564291084|ref|YP_008877417.1|	-	1.4	8.8	6.8	0.41	10.5	0.5	3.4	2	1	0	2	2	2	0	TNF	receptor-associated	factor	BIRC3	binding	domain
Vip3A_N	PF12495.8	gi|564291084|ref|YP_008877417.1|	-	1.5	8.7	5.2	1.6	8.6	0.2	3.0	2	1	2	4	4	3	0	Vegetative	insecticide	protein	3A	N	terminal
ERM	PF00769.19	gi|564291084|ref|YP_008877417.1|	-	1.6	8.5	32.9	0.014	15.3	9.0	3.5	1	1	2	4	4	4	0	Ezrin/radixin/moesin	family
Ferritin	PF00210.24	gi|564291084|ref|YP_008877417.1|	-	1.8	8.5	18.4	0.62	10.0	1.5	3.6	2	1	2	4	4	4	0	Ferritin-like	domain
Med15_fungi	PF05397.12	gi|564291084|ref|YP_008877417.1|	-	2.3	8.5	4.8	14	6.0	0.7	3.5	1	1	1	3	3	2	0	Mediator	complex	subunit	15
DUF5082	PF16888.5	gi|564291084|ref|YP_008877417.1|	-	2.3	8.5	18.4	0.63	10.3	2.2	4.4	3	1	1	4	4	4	0	Domain	of	unknown	function	(DUF5082)
DASH_Dam1	PF08653.10	gi|564291084|ref|YP_008877417.1|	-	2.4	8.0	12.0	32	4.4	0.1	6.3	8	0	0	8	8	6	0	DASH	complex	subunit	Dam1
DASH_Duo1	PF08651.10	gi|564291084|ref|YP_008877417.1|	-	2.7	7.8	17.1	0.42	10.4	0.2	5.5	7	1	1	8	8	5	0	DASH	complex	subunit	Duo1
Rx_N	PF18052.1	gi|564291084|ref|YP_008877417.1|	-	2.9	8.2	29.4	2.1	8.7	2.8	6.7	1	1	4	6	6	6	0	Rx	N-terminal	domain
NPV_P10	PF05531.12	gi|564291084|ref|YP_008877417.1|	-	3.4	8.2	40.9	3.3	8.3	2.3	6.6	4	3	1	5	5	5	0	Nucleopolyhedrovirus	P10	protein
Laminin_I	PF06008.14	gi|564291084|ref|YP_008877417.1|	-	3.8	7.1	37.1	1	9.0	3.3	4.9	2	2	2	5	5	5	0	Laminin	Domain	I
UL11	PF11094.8	gi|564291084|ref|YP_008877417.1|	-	6.3	6.8	8.0	0.38	10.7	0.5	2.7	3	0	0	3	3	2	0	Membrane-associated	tegument	protein
ZapB	PF06005.12	gi|564291084|ref|YP_008877417.1|	-	6.9	7.2	16.6	0.7	10.4	2.3	4.7	2	1	2	4	4	4	0	Cell	division	protein	ZapB
TMPIT	PF07851.13	gi|564291084|ref|YP_008877417.1|	-	7.1	5.8	18.4	2.8	7.1	0.6	4.0	2	2	2	4	4	4	0	TMPIT-like	protein
Goodbye	PF17109.5	gi|564291084|ref|YP_008877417.1|	-	7.7	7.0	14.7	27	5.3	1.1	4.9	2	2	3	5	5	5	0	fungal	STAND	N-terminal	Goodbye	domain
CENP-F_leu_zip	PF10473.9	gi|564291084|ref|YP_008877417.1|	-	8.9	6.3	29.4	45	4.1	13.6	4.5	3	3	0	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
PIN_3	PF13470.6	gi|564291085|ref|YP_008877418.1|	-	4.6e-05	24.1	1.2	0.00034	21.4	1.2	1.9	1	1	0	1	1	1	1	PIN	domain
TrkA_N	PF02254.18	gi|564291087|ref|YP_008877420.1|	-	1.3e-25	89.9	0.2	1.8e-25	89.4	0.2	1.2	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564291087|ref|YP_008877420.1|	-	8.1e-14	51.2	0.1	1.6e-13	50.2	0.1	1.5	1	0	0	1	1	1	1	TrkA-C	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564291087|ref|YP_008877420.1|	-	1.9e-06	27.6	0.1	2.9e-06	27.0	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|564291087|ref|YP_008877420.1|	-	0.00032	20.8	0.1	0.00046	20.3	0.1	1.3	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564291087|ref|YP_008877420.1|	-	0.00073	18.9	0.1	0.0013	18.1	0.1	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|564291087|ref|YP_008877420.1|	-	0.0019	17.9	0.1	0.0036	17.0	0.1	1.4	2	0	0	2	2	2	1	Ketopantoate	reductase	PanE/ApbA
IlvN	PF07991.12	gi|564291087|ref|YP_008877420.1|	-	0.0025	17.4	0.1	0.0061	16.1	0.1	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_7	PF13241.6	gi|564291087|ref|YP_008877420.1|	-	0.0029	18.0	0.0	0.004	17.6	0.0	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
3HCDH_N	PF02737.18	gi|564291087|ref|YP_008877420.1|	-	0.0039	17.1	0.1	0.0053	16.6	0.1	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564291087|ref|YP_008877420.1|	-	0.0085	16.4	0.2	0.013	15.8	0.2	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
F420_oxidored	PF03807.17	gi|564291087|ref|YP_008877420.1|	-	0.014	15.9	0.1	0.026	15.1	0.1	1.4	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|564291087|ref|YP_008877420.1|	-	0.031	14.4	0.1	0.061	13.5	0.0	1.6	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|564291087|ref|YP_008877420.1|	-	0.032	13.5	0.1	0.036	13.3	0.1	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.19	gi|564291087|ref|YP_008877420.1|	-	0.034	13.4	0.0	0.039	13.2	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
XdhC_C	PF13478.6	gi|564291087|ref|YP_008877420.1|	-	0.055	14.0	0.0	0.086	13.4	0.0	1.5	1	0	0	1	1	1	0	XdhC	Rossmann	domain
Pyr_redox_2	PF07992.14	gi|564291087|ref|YP_008877420.1|	-	0.069	12.4	0.1	0.078	12.2	0.1	1.2	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564291087|ref|YP_008877420.1|	-	0.11	13.0	0.1	0.22	12.1	0.1	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Epimerase	PF01370.21	gi|564291087|ref|YP_008877420.1|	-	0.13	11.7	0.0	0.18	11.2	0.0	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Gp_dh_N	PF00044.24	gi|564291087|ref|YP_008877420.1|	-	0.15	12.4	0.1	0.26	11.7	0.1	1.4	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Big_3_5	PF16640.5	gi|564291088|ref|YP_008877421.1|	-	3.6e-05	23.9	23.5	0.0036	17.4	6.7	2.5	2	0	0	2	2	2	2	Bacterial	Ig-like	domain	(group	3)
A2M	PF00207.22	gi|564291088|ref|YP_008877421.1|	-	0.00054	19.8	0.6	0.5	10.3	0.0	2.5	2	0	0	2	2	2	2	Alpha-2-macroglobulin	family
Fn3-like	PF14310.6	gi|564291088|ref|YP_008877421.1|	-	0.0061	16.6	0.4	5.6	7.1	0.0	2.7	2	0	0	2	2	2	2	Fibronectin	type	III-like	domain
BsuPI	PF12690.7	gi|564291088|ref|YP_008877421.1|	-	0.075	13.1	6.0	6	7.0	0.0	4.0	2	2	2	4	4	4	0	Intracellular	proteinase	inhibitor
DUF1616	PF07760.11	gi|564291088|ref|YP_008877421.1|	-	0.62	9.4	4.4	8.8	5.6	0.3	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1616)
Lactamase_B_2	PF12706.7	gi|564291089|ref|YP_008877422.1|	-	3.4e-24	85.5	0.7	3.3e-11	43.1	0.0	2.1	2	0	0	2	2	2	2	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.27	gi|564291089|ref|YP_008877422.1|	-	3.9e-18	66.2	3.5	5.3e-16	59.2	3.5	2.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_4	PF13691.6	gi|564291089|ref|YP_008877422.1|	-	0.0018	17.9	0.0	0.0035	17.0	0.0	1.4	1	0	0	1	1	1	1	tRNase	Z	endonuclease
GFO_IDH_MocA	PF01408.22	gi|564291090|ref|YP_008877423.1|	-	1.2e-23	84.3	0.1	2.1e-23	83.4	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|564291090|ref|YP_008877423.1|	-	9.6e-07	28.8	0.0	1.8e-06	27.9	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
IlvN	PF07991.12	gi|564291090|ref|YP_008877423.1|	-	0.067	12.8	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
DJ-1_PfpI	PF01965.24	gi|564291091|ref|YP_008877424.1|	-	1.2e-23	83.8	0.2	2.2e-23	82.9	0.2	1.5	1	0	0	1	1	1	1	DJ-1/PfpI	family
Fer2_2	PF01799.20	gi|564291091|ref|YP_008877424.1|	-	0.035	14.1	0.0	0.11	12.5	0.0	1.8	1	1	0	1	1	1	0	[2Fe-2S]	binding	domain
GATase_3	PF07685.14	gi|564291091|ref|YP_008877424.1|	-	0.19	11.3	0.0	0.38	10.3	0.0	1.5	1	1	1	2	2	2	0	CobB/CobQ-like	glutamine	amidotransferase	domain
PhzC-PhzF	PF02567.16	gi|564291092|ref|YP_008877425.1|	-	2.3e-63	214.3	0.0	2.6e-63	214.2	0.0	1.0	1	0	0	1	1	1	1	Phenazine	biosynthesis-like	protein
Pro_racemase	PF05544.11	gi|564291092|ref|YP_008877425.1|	-	0.1	11.6	0.0	0.16	11.0	0.0	1.2	1	0	0	1	1	1	0	Proline	racemase
Glyoxalase	PF00903.25	gi|564291093|ref|YP_008877426.1|	-	5.6e-12	46.0	0.2	6.4e-12	45.8	0.2	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_4	PF13669.6	gi|564291093|ref|YP_008877426.1|	-	2.6e-10	40.6	0.0	3.1e-10	40.3	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_6	PF18029.1	gi|564291093|ref|YP_008877426.1|	-	1.6e-07	32.1	0.6	2e-07	31.7	0.6	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_3	PF13468.6	gi|564291093|ref|YP_008877426.1|	-	0.0047	17.1	0.2	0.052	13.7	0.2	2.0	1	1	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_5	PF14696.6	gi|564291093|ref|YP_008877426.1|	-	0.0076	16.4	0.0	0.0099	16.1	0.0	1.1	1	0	0	1	1	1	1	Hydroxyphenylpyruvate	dioxygenase,	HPPD,	N-terminal
DUF5493	PF17597.2	gi|564291095|ref|YP_008877428.1|	-	0.094	13.0	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5493)
PALP	PF00291.25	gi|564291096|ref|YP_008877429.1|	-	8.8e-85	284.7	7.0	1.1e-84	284.3	7.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT_4	PF13291.6	gi|564291096|ref|YP_008877429.1|	-	8.6e-07	29.5	0.1	3.4e-06	27.6	0.1	2.0	2	0	0	2	2	2	1	ACT	domain
ACT	PF01842.25	gi|564291096|ref|YP_008877429.1|	-	0.00039	20.1	0.1	0.00039	20.1	0.1	2.7	3	0	0	3	3	3	1	ACT	domain
CagE_TrbE_VirB	PF03135.14	gi|564291096|ref|YP_008877429.1|	-	0.014	15.5	0.0	0.026	14.7	0.0	1.3	1	0	0	1	1	1	0	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
Pep_deformylase	PF01327.21	gi|564291096|ref|YP_008877429.1|	-	0.43	10.2	2.8	2.4	7.7	0.1	2.6	2	1	1	3	3	3	0	Polypeptide	deformylase
FtsA	PF14450.6	gi|564291096|ref|YP_008877429.1|	-	1.8	9.0	6.2	11	6.4	3.4	2.6	2	1	0	2	2	2	0	Cell	division	protein	FtsA
TrkA_N	PF02254.18	gi|564291097|ref|YP_008877430.1|	-	1.3e-41	141.5	7.5	3.6e-20	72.3	1.2	3.7	3	1	0	3	3	3	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|564291097|ref|YP_008877430.1|	-	2.3e-23	81.8	1.6	3e-11	43.0	0.0	2.9	3	0	0	3	3	3	2	TrkA-C	domain
FAD_binding_3	PF01494.19	gi|564291097|ref|YP_008877430.1|	-	0.009	15.3	0.2	0.014	14.6	0.2	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564291097|ref|YP_008877430.1|	-	0.016	15.4	0.4	0.16	12.2	0.1	2.5	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
Ion_trans_2	PF07885.16	gi|564291097|ref|YP_008877430.1|	-	0.033	14.1	2.8	0.095	12.7	2.9	1.8	1	1	0	1	1	1	0	Ion	channel
XdhC_C	PF13478.6	gi|564291097|ref|YP_008877430.1|	-	0.043	14.3	0.7	0.13	12.8	0.1	2.0	2	0	0	2	2	2	0	XdhC	Rossmann	domain
NAD_binding_2	PF03446.15	gi|564291097|ref|YP_008877430.1|	-	0.083	13.1	0.5	0.24	11.6	0.0	2.1	3	0	0	3	3	3	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ThiF	PF00899.21	gi|564291097|ref|YP_008877430.1|	-	0.085	12.2	0.5	1.7	7.9	0.0	2.4	3	0	0	3	3	3	0	ThiF	family
NAD_binding_7	PF13241.6	gi|564291097|ref|YP_008877430.1|	-	0.17	12.4	1.4	0.48	10.9	0.3	2.4	2	1	0	2	2	2	0	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|564291097|ref|YP_008877430.1|	-	1.1	8.5	5.5	3.4	6.9	5.5	1.8	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Citrate_synt	PF00285.21	gi|564291098|ref|YP_008877431.1|	-	2.5e-124	415.0	0.0	2.9e-124	414.8	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase,	C-terminal	domain
TrkA_C	PF02080.21	gi|564291099|ref|YP_008877432.1|	-	1.5e-28	98.4	0.7	1.2e-15	57.1	0.0	3.1	2	1	0	2	2	2	2	TrkA-C	domain
PhoU	PF01895.19	gi|564291099|ref|YP_008877432.1|	-	9.9e-18	64.4	6.7	4.4e-08	33.5	1.7	2.9	2	0	0	2	2	2	2	PhoU	domain
KfrA_N	PF11740.8	gi|564291099|ref|YP_008877432.1|	-	0.05	14.3	3.7	1.2	9.9	0.1	3.3	2	1	1	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
CLZ	PF16526.5	gi|564291099|ref|YP_008877432.1|	-	0.061	13.7	1.0	4.1	7.8	0.0	2.5	2	0	0	2	2	2	0	C-terminal	leucine	zipper	domain	of	cyclic	nucleotide-gated	channels
AstE_AspA	PF04952.14	gi|564291101|ref|YP_008877434.1|	-	5.7e-55	186.5	0.0	6.5e-55	186.3	0.0	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
PALP	PF00291.25	gi|564291102|ref|YP_008877435.1|	-	1.3e-63	215.2	5.3	1.4e-63	215.0	5.3	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
HTH_22	PF13309.6	gi|564291102|ref|YP_008877435.1|	-	0.22	11.6	0.0	0.43	10.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
US6	PF17616.2	gi|564291103|ref|YP_008877436.1|	-	0.072	13.0	0.0	0.088	12.8	0.0	1.1	1	0	0	1	1	1	0	Viral	unique	short	region	6
DUF1743	PF08489.11	gi|564291105|ref|YP_008877438.1|	-	8.8e-40	135.4	0.0	1.5e-39	134.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
tRNA_anti-codon	PF01336.25	gi|564291105|ref|YP_008877438.1|	-	0.0005	20.0	0.1	0.0011	18.9	0.1	1.6	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA_anti_2	PF13742.6	gi|564291105|ref|YP_008877438.1|	-	0.0015	18.7	0.0	0.0029	17.8	0.0	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Zn-ribbon_8	PF09723.10	gi|564291105|ref|YP_008877438.1|	-	0.0027	17.8	1.7	1.4	9.1	0.2	2.9	2	0	0	2	2	2	2	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564291105|ref|YP_008877438.1|	-	0.011	15.6	1.0	0.027	14.4	1.0	1.6	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
C1_1	PF00130.22	gi|564291105|ref|YP_008877438.1|	-	0.023	14.6	0.1	0.044	13.7	0.1	1.4	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
IBR	PF01485.21	gi|564291105|ref|YP_008877438.1|	-	0.028	14.6	0.1	0.051	13.8	0.1	1.4	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
HypA	PF01155.19	gi|564291105|ref|YP_008877438.1|	-	0.028	14.4	0.3	0.062	13.3	0.3	1.5	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|564291105|ref|YP_008877438.1|	-	0.1	12.6	1.2	0.25	11.4	1.2	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|564291105|ref|YP_008877438.1|	-	0.13	12.2	1.5	0.32	11.0	1.5	1.7	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn_ribbon_recom	PF13408.6	gi|564291105|ref|YP_008877438.1|	-	0.41	11.2	3.2	0.96	10.0	3.2	1.5	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
HTH_3	PF01381.22	gi|564291106|ref|YP_008877439.1|	-	2e-08	34.2	0.0	3.3e-08	33.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.6	gi|564291106|ref|YP_008877439.1|	-	1.3e-05	25.4	0.1	2.9e-05	24.3	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.7	gi|564291106|ref|YP_008877439.1|	-	6.4e-05	22.9	0.0	0.00014	21.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|564291106|ref|YP_008877439.1|	-	6.4e-05	22.8	0.1	0.00016	21.6	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.6	gi|564291106|ref|YP_008877439.1|	-	0.00087	19.0	0.2	0.0022	17.7	0.0	1.7	2	0	0	2	2	1	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|564291106|ref|YP_008877439.1|	-	0.012	15.1	0.0	0.023	14.2	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_8	PF02954.19	gi|564291106|ref|YP_008877439.1|	-	0.015	15.1	0.0	0.038	13.8	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_25	PF13413.6	gi|564291106|ref|YP_008877439.1|	-	0.021	14.7	0.7	0.039	13.8	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|564291106|ref|YP_008877439.1|	-	0.056	13.2	0.0	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_24	PF13412.6	gi|564291106|ref|YP_008877439.1|	-	0.069	12.7	0.0	0.16	11.5	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_32	PF13565.6	gi|564291106|ref|YP_008877439.1|	-	0.097	13.3	0.0	0.24	12.0	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
NUMOD1	PF07453.13	gi|564291106|ref|YP_008877439.1|	-	0.12	12.6	0.0	0.24	11.7	0.0	1.5	1	0	0	1	1	1	0	NUMOD1	domain
HTH_38	PF13936.6	gi|564291106|ref|YP_008877439.1|	-	0.13	12.1	0.0	0.23	11.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
YdaS_antitoxin	PF15943.5	gi|564291106|ref|YP_008877439.1|	-	0.13	12.2	0.0	0.28	11.1	0.0	1.5	1	0	0	1	1	1	0	Putative	antitoxin	of	bacterial	toxin-antitoxin	system,	YdaS/YdaT
HTH_36	PF13730.6	gi|564291106|ref|YP_008877439.1|	-	0.17	11.9	0.0	0.35	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.6	gi|564291106|ref|YP_008877439.1|	-	0.17	12.0	0.1	0.66	10.1	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_AraC	PF00165.23	gi|564291106|ref|YP_008877439.1|	-	0.2	11.8	0.0	0.44	10.7	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
GST_N_3	PF13417.6	gi|564291107|ref|YP_008877440.1|	-	1.9e-15	57.0	0.0	2.1e-15	56.9	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|564291107|ref|YP_008877440.1|	-	1.4e-12	47.6	0.0	2.1e-12	47.1	0.0	1.3	1	1	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|564291107|ref|YP_008877440.1|	-	1.8e-10	40.9	0.0	2.1e-10	40.7	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
DUF836	PF05768.14	gi|564291107|ref|YP_008877440.1|	-	0.019	15.4	0.2	0.024	15.0	0.2	1.4	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
GST_N	PF02798.20	gi|564291107|ref|YP_008877440.1|	-	0.13	12.7	0.0	0.19	12.1	0.0	1.4	1	1	0	1	1	1	0	Glutathione	S-transferase,	N-terminal	domain
Pribosyltran	PF00156.27	gi|564291108|ref|YP_008877441.1|	-	5e-15	55.4	0.8	6.7e-15	54.9	0.8	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.6	gi|564291108|ref|YP_008877441.1|	-	0.00027	20.5	0.1	0.00034	20.1	0.1	1.1	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyl_synth	PF14572.6	gi|564291108|ref|YP_008877441.1|	-	0.017	15.2	0.3	0.027	14.5	0.2	1.5	2	0	0	2	2	2	0	Phosphoribosyl	synthetase-associated	domain
RGP	PF03214.13	gi|564291108|ref|YP_008877441.1|	-	0.16	11.1	0.0	0.27	10.3	0.0	1.3	1	1	0	1	1	1	0	Reversibly	glycosylated	polypeptide
PGM_PMM_I	PF02878.16	gi|564291109|ref|YP_008877442.1|	-	9.5e-36	122.6	0.0	1.8e-35	121.6	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|564291109|ref|YP_008877442.1|	-	1.5e-29	102.6	0.4	8.7e-29	100.2	0.1	2.4	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|564291109|ref|YP_008877442.1|	-	6.6e-17	61.7	0.0	1.3e-16	60.8	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|564291109|ref|YP_008877442.1|	-	3.5e-15	55.9	0.6	1.1e-14	54.3	0.6	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Seryl_tRNA_N	PF02403.22	gi|564291110|ref|YP_008877443.1|	-	0.0042	17.3	0.3	0.0042	17.3	0.3	2.6	3	1	0	3	3	3	1	Seryl-tRNA	synthetase	N-terminal	domain
Sigma70_r1_1	PF03979.14	gi|564291110|ref|YP_008877443.1|	-	0.08	13.0	0.1	0.23	11.5	0.1	1.8	1	0	0	1	1	1	0	Sigma-70	factor,	region	1.1
HSBP1	PF06825.12	gi|564291110|ref|YP_008877443.1|	-	0.088	12.7	2.8	0.68	9.8	0.4	2.5	2	0	0	2	2	2	0	Heat	shock	factor	binding	protein	1
EzrA	PF06160.12	gi|564291110|ref|YP_008877443.1|	-	0.1	10.8	0.1	0.18	9.9	0.1	1.4	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
JIP_LZII	PF16471.5	gi|564291110|ref|YP_008877443.1|	-	0.86	9.8	5.4	0.38	11.0	0.5	2.7	3	0	0	3	3	3	0	JNK-interacting	protein	leucine	zipper	II
DUF3450	PF11932.8	gi|564291110|ref|YP_008877443.1|	-	1.8	7.8	7.3	0.33	10.2	0.1	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3450)
PRA-CH	PF01502.18	gi|564291111|ref|YP_008877444.1|	-	4.4e-35	119.4	0.4	5.9e-35	118.9	0.4	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
Arc_PepC_II	PF06847.11	gi|564291112|ref|YP_008877445.1|	-	7.5e-12	45.6	0.6	5.2e-09	36.5	0.0	2.6	3	0	0	3	3	3	2	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.18	gi|564291112|ref|YP_008877445.1|	-	1.8e-08	34.8	7.4	3.8e-08	33.7	7.4	1.6	1	0	0	1	1	1	1	Type	IV	leader	peptidase	family
Fer2	PF00111.27	gi|564291113|ref|YP_008877446.1|	-	6e-15	55.0	0.2	8.8e-15	54.4	0.2	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|564291113|ref|YP_008877446.1|	-	0.021	14.8	0.1	0.046	13.8	0.1	1.5	1	1	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
PHO4	PF01384.20	gi|564291114|ref|YP_008877447.1|	-	2e-37	129.0	33.5	9.1e-37	126.8	33.5	1.9	1	1	0	1	1	1	1	Phosphate	transporter	family
DUF948	PF06103.11	gi|564291115|ref|YP_008877448.1|	-	2.6e-06	27.6	47.4	0.00073	19.7	8.5	3.7	1	1	3	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
UPF0242	PF06785.11	gi|564291115|ref|YP_008877448.1|	-	2.2e-05	24.7	9.9	2.2e-05	24.7	9.9	2.2	1	1	1	2	2	2	1	Uncharacterised	protein	family	(UPF0242)	N-terminus
BLOC1_2	PF10046.9	gi|564291115|ref|YP_008877448.1|	-	0.00021	21.6	32.4	0.0007	19.8	7.7	4.2	1	1	3	4	4	4	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF3540	PF12059.8	gi|564291115|ref|YP_008877448.1|	-	0.00028	20.8	13.4	0.00028	20.8	13.4	2.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3540)
LMBR1	PF04791.16	gi|564291115|ref|YP_008877448.1|	-	0.00034	19.6	6.1	0.00072	18.6	6.0	1.4	1	1	0	1	1	1	1	LMBR1-like	membrane	protein
Laminin_II	PF06009.12	gi|564291115|ref|YP_008877448.1|	-	0.00049	20.1	40.5	0.096	12.7	12.2	3.4	1	1	2	3	3	3	3	Laminin	Domain	II
MCPsignal	PF00015.21	gi|564291115|ref|YP_008877448.1|	-	0.001	18.9	43.5	0.0063	16.4	7.2	3.1	1	1	2	3	3	3	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Alanine_zipper	PF11839.8	gi|564291115|ref|YP_008877448.1|	-	0.0012	19.1	53.5	0.032	14.6	8.9	4.2	1	1	3	4	4	4	3	Alanine-zipper,	major	outer	membrane	lipoprotein
TMPIT	PF07851.13	gi|564291115|ref|YP_008877448.1|	-	0.0031	16.8	29.5	0.031	13.5	8.4	2.2	1	1	1	2	2	2	2	TMPIT-like	protein
Spc7	PF08317.11	gi|564291115|ref|YP_008877448.1|	-	0.0033	16.4	43.3	0.021	13.7	19.5	2.2	1	1	1	2	2	2	2	Spc7	kinetochore	protein
WXG100	PF06013.12	gi|564291115|ref|YP_008877448.1|	-	0.0039	17.4	8.7	0.0039	17.4	8.7	4.2	1	1	2	4	4	4	2	Proteins	of	100	residues	with	WXG
DUF1664	PF07889.12	gi|564291115|ref|YP_008877448.1|	-	0.0055	16.7	30.5	0.025	14.6	9.5	3.0	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF1664)
DUF3450	PF11932.8	gi|564291115|ref|YP_008877448.1|	-	0.0063	15.9	39.7	0.1	11.9	16.9	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3450)
Atg14	PF10186.9	gi|564291115|ref|YP_008877448.1|	-	0.018	14.1	20.5	0.41	9.7	9.8	2.1	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Oleosin	PF01277.17	gi|564291115|ref|YP_008877448.1|	-	0.019	14.7	1.5	0.019	14.7	1.5	5.5	1	1	3	4	4	3	0	Oleosin
Sec34	PF04136.15	gi|564291115|ref|YP_008877448.1|	-	0.025	14.5	28.3	0.51	10.2	6.9	3.9	1	1	3	4	4	4	0	Sec34-like	family
EzrA	PF06160.12	gi|564291115|ref|YP_008877448.1|	-	0.048	11.8	33.3	0.46	8.6	32.3	1.9	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
CorA	PF01544.18	gi|564291115|ref|YP_008877448.1|	-	0.057	12.7	17.1	0.46	9.8	10.3	2.6	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
ERM	PF00769.19	gi|564291115|ref|YP_008877448.1|	-	0.057	13.2	50.9	2.5	7.8	51.0	2.1	1	1	0	1	1	1	0	Ezrin/radixin/moesin	family
DUF4201	PF13870.6	gi|564291115|ref|YP_008877448.1|	-	0.064	13.0	21.4	0.7	9.6	4.4	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4201)
Fib_alpha	PF08702.10	gi|564291115|ref|YP_008877448.1|	-	0.097	12.8	27.4	0.24	11.6	7.1	2.8	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
Synaptobrevin	PF00957.21	gi|564291115|ref|YP_008877448.1|	-	0.14	12.0	27.2	0.57	10.0	7.1	4.3	1	1	2	4	4	4	0	Synaptobrevin
ATP-synt_B	PF00430.18	gi|564291115|ref|YP_008877448.1|	-	0.14	12.2	41.2	0.32	11.1	8.2	3.2	1	1	2	3	3	3	0	ATP	synthase	B/B'	CF(0)
ISG65-75	PF11727.8	gi|564291115|ref|YP_008877448.1|	-	0.19	10.9	47.3	1.3	8.1	23.9	2.1	1	1	1	2	2	2	0	Invariant	surface	glycoprotein
HMMR_N	PF15905.5	gi|564291115|ref|YP_008877448.1|	-	0.22	11.0	43.6	0.26	10.7	18.4	2.0	1	1	1	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
Collagen_mid	PF15984.5	gi|564291115|ref|YP_008877448.1|	-	0.43	10.3	11.4	0.044	13.5	6.3	1.8	1	1	1	2	2	2	0	Bacterial	collagen,	middle	region
Uso1_p115_C	PF04871.13	gi|564291115|ref|YP_008877448.1|	-	0.44	10.9	50.8	1.2	9.5	21.9	2.6	1	1	1	2	2	2	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
GldM_N	PF12081.8	gi|564291115|ref|YP_008877448.1|	-	0.46	10.6	38.7	14	5.7	21.5	3.1	1	1	1	2	2	2	0	GldM	N-terminal	domain
V-SNARE_C	PF12352.8	gi|564291115|ref|YP_008877448.1|	-	0.48	10.7	2.4	12	6.2	0.0	3.5	2	1	1	3	3	3	0	Snare	region	anchored	in	the	vesicle	membrane	C-terminus
DUF2203	PF09969.9	gi|564291115|ref|YP_008877448.1|	-	0.6	10.8	33.7	0.57	10.9	8.9	3.1	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
YtxH	PF12732.7	gi|564291115|ref|YP_008877448.1|	-	0.6	10.7	55.5	11	6.6	9.8	4.6	1	1	1	2	2	1	0	YtxH-like	protein
Snapin_Pallidin	PF14712.6	gi|564291115|ref|YP_008877448.1|	-	0.62	10.5	22.8	0.053	13.9	5.9	3.2	1	1	2	3	3	3	0	Snapin/Pallidin
Fez1	PF06818.15	gi|564291115|ref|YP_008877448.1|	-	0.77	10.2	40.0	2.9	8.3	16.5	2.1	1	1	1	2	2	2	0	Fez1
RmuC	PF02646.16	gi|564291115|ref|YP_008877448.1|	-	0.8	8.8	29.1	1.4	8.0	4.6	3.6	1	1	2	3	3	3	0	RmuC	family
Serine_rich	PF08824.10	gi|564291115|ref|YP_008877448.1|	-	1.3	9.0	16.3	0.91	9.5	0.8	2.9	1	1	2	3	3	3	0	Serine	rich	protein	interaction	domain
DUF724	PF05266.14	gi|564291115|ref|YP_008877448.1|	-	1.6	8.5	35.3	0.73	9.6	15.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF724)
T2SSM	PF04612.12	gi|564291115|ref|YP_008877448.1|	-	1.8	8.6	23.8	0.89	9.6	3.7	4.3	1	1	4	5	5	5	0	Type	II	secretion	system	(T2SS),	protein	M
Spectrin	PF00435.21	gi|564291115|ref|YP_008877448.1|	-	2.3	8.8	33.1	7.4	7.1	13.1	3.0	1	1	2	3	3	3	0	Spectrin	repeat
DUF2959	PF11172.8	gi|564291115|ref|YP_008877448.1|	-	2.7	8.1	32.8	1.1	9.4	5.3	3.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2959)
DUF4200	PF13863.6	gi|564291115|ref|YP_008877448.1|	-	2.9	8.3	40.3	0.37	11.2	15.5	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
TPR_MLP1_2	PF07926.12	gi|564291115|ref|YP_008877448.1|	-	3.6	7.7	48.6	22	5.1	21.5	3.0	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
MscS_porin	PF12795.7	gi|564291115|ref|YP_008877448.1|	-	3.8	7.0	33.7	1.1	8.8	22.1	2.1	1	1	1	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
Syntaxin-6_N	PF09177.11	gi|564291115|ref|YP_008877448.1|	-	4	8.1	36.8	1.4	9.5	15.9	3.2	1	1	1	2	2	1	0	Syntaxin	6,	N-terminal
DUF3584	PF12128.8	gi|564291115|ref|YP_008877448.1|	-	4.8	4.6	38.6	6.4	4.1	38.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
LXG	PF04740.12	gi|564291115|ref|YP_008877448.1|	-	4.9	6.8	32.3	3.6	7.2	17.7	2.3	1	1	1	2	2	2	0	LXG	domain	of	WXG	superfamily
GARP	PF16731.5	gi|564291115|ref|YP_008877448.1|	-	5.3	6.7	55.1	0.96	9.1	21.6	2.2	1	1	1	2	2	2	0	Glutamic	acid/alanine-rich	protein	of	Trypanosoma
Tropomyosin	PF00261.20	gi|564291115|ref|YP_008877448.1|	-	5.5	6.3	58.2	2.8	7.3	28.0	2.2	1	1	0	2	2	2	0	Tropomyosin
zf-C4H2	PF10146.9	gi|564291115|ref|YP_008877448.1|	-	6.4	7.0	31.1	5.5	7.2	2.0	2.1	1	1	1	2	2	2	0	Zinc	finger-containing	protein
DUF3552	PF12072.8	gi|564291115|ref|YP_008877448.1|	-	7.3	5.9	45.7	16	4.9	13.0	2.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3552)
HemX	PF04375.14	gi|564291115|ref|YP_008877448.1|	-	7.5	5.7	34.5	2.8e+02	0.6	12.5	3.0	1	1	1	2	2	2	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
DUF4446	PF14584.6	gi|564291115|ref|YP_008877448.1|	-	7.9	6.4	23.9	0.14	12.1	0.7	3.8	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF4446)
CheZ	PF04344.13	gi|564291115|ref|YP_008877448.1|	-	8.3	6.3	35.0	18	5.2	21.9	2.5	1	1	1	2	2	2	0	Chemotaxis	phosphatase,	CheZ
ATG16	PF08614.11	gi|564291115|ref|YP_008877448.1|	-	8.3	6.6	45.6	1.5	9.0	18.1	2.2	1	1	0	2	2	2	0	Autophagy	protein	16	(ATG16)
His_biosynth	PF00977.21	gi|564291116|ref|YP_008877449.1|	-	1.2e-71	240.8	4.3	1.4e-71	240.6	4.3	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.21	gi|564291116|ref|YP_008877449.1|	-	4.1e-11	42.7	0.4	1.6e-07	30.8	0.1	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
Dus	PF01207.17	gi|564291116|ref|YP_008877449.1|	-	1.4e-07	30.9	0.1	0.0071	15.5	0.0	2.1	2	0	0	2	2	2	2	Dihydrouridine	synthase	(Dus)
NMO	PF03060.15	gi|564291116|ref|YP_008877449.1|	-	1e-06	28.4	6.5	4.7e-06	26.2	1.1	2.1	2	0	0	2	2	2	1	Nitronate	monooxygenase
ThiG	PF05690.14	gi|564291116|ref|YP_008877449.1|	-	1.8e-05	24.2	4.6	0.023	14.0	0.2	2.1	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.21	gi|564291116|ref|YP_008877449.1|	-	0.00025	20.3	0.1	0.005	16.0	0.0	2.6	2	1	1	3	3	3	1	Indole-3-glycerol	phosphate	synthase
PcrB	PF01884.17	gi|564291116|ref|YP_008877449.1|	-	0.00035	20.1	2.5	0.036	13.5	0.2	2.3	2	0	0	2	2	2	2	PcrB	family
Trp_syntA	PF00290.20	gi|564291116|ref|YP_008877449.1|	-	0.00042	19.2	1.1	0.062	12.1	0.2	2.2	2	0	0	2	2	2	2	Tryptophan	synthase	alpha	chain
NanE	PF04131.14	gi|564291116|ref|YP_008877449.1|	-	0.0016	17.7	0.4	1	8.5	0.1	2.2	2	0	0	2	2	2	2	Putative	N-acetylmannosamine-6-phosphate	epimerase
IMPDH	PF00478.25	gi|564291116|ref|YP_008877449.1|	-	0.0017	17.4	6.4	0.024	13.6	1.3	2.3	2	1	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
FMN_dh	PF01070.18	gi|564291116|ref|YP_008877449.1|	-	0.0047	16.0	13.4	0.11	11.6	2.1	2.2	2	0	0	2	2	2	2	FMN-dependent	dehydrogenase
TMP-TENI	PF02581.17	gi|564291116|ref|YP_008877449.1|	-	0.0064	15.8	0.9	0.01	15.2	0.1	1.7	2	0	0	2	2	2	1	Thiamine	monophosphate	synthase
G3P_antiterm	PF04309.12	gi|564291116|ref|YP_008877449.1|	-	0.014	14.8	0.7	0.09	12.2	0.1	2.1	2	0	0	2	2	2	0	Glycerol-3-phosphate	responsive	antiterminator
DNA_pol_lambd_f	PF10391.9	gi|564291116|ref|YP_008877449.1|	-	0.05	13.4	0.1	1.9	8.4	0.0	2.8	3	0	0	3	3	3	0	Fingers	domain	of	DNA	polymerase	lambda
B12-binding	PF02310.19	gi|564291116|ref|YP_008877449.1|	-	0.077	13.0	3.4	4.1	7.5	0.6	2.8	1	1	1	2	2	2	0	B12	binding	domain
CoA_binding_2	PF13380.6	gi|564291116|ref|YP_008877449.1|	-	0.11	13.0	0.7	0.92	10.0	0.0	2.2	2	0	0	2	2	2	0	CoA	binding	domain
Ribul_P_3_epim	PF00834.19	gi|564291116|ref|YP_008877449.1|	-	0.28	10.5	3.4	0.39	10.1	0.2	2.2	2	0	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
Glyco_hydro_97	PF10566.9	gi|564291117|ref|YP_008877450.1|	-	1.8e-91	306.3	0.0	2.8e-91	305.7	0.0	1.3	1	0	0	1	1	1	1	Glycoside	hydrolase	97
GH97_N	PF14508.6	gi|564291117|ref|YP_008877450.1|	-	2.5e-65	220.2	0.0	6e-65	219.0	0.0	1.6	2	0	0	2	2	2	1	Glycosyl-hydrolase	97	N-terminal
Glucodextran_C	PF09985.9	gi|564291117|ref|YP_008877450.1|	-	5.4e-49	166.7	0.0	9.2e-49	165.9	0.0	1.4	1	0	0	1	1	1	1	C-terminal	binding-module,	SLH-like,	of	glucodextranase
GH97_C	PF14509.6	gi|564291117|ref|YP_008877450.1|	-	2e-25	88.8	0.0	5.3e-25	87.5	0.0	1.8	1	0	0	1	1	1	1	Glycosyl-hydrolase	97	C-terminal,	oligomerisation
CBM_6	PF03422.15	gi|564291117|ref|YP_008877450.1|	-	5.5e-06	26.7	1.3	5.5e-06	26.7	1.3	3.2	4	0	0	4	4	3	1	Carbohydrate	binding	module	(family	6)
DUF5010_C	PF18099.1	gi|564291117|ref|YP_008877450.1|	-	0.0047	17.0	0.1	0.028	14.6	0.1	2.4	1	0	0	1	1	1	1	DUF5010	C-terminal	domain
CBM_35	PF16990.5	gi|564291117|ref|YP_008877450.1|	-	0.0061	16.8	1.0	0.018	15.3	0.3	2.2	2	0	0	2	2	2	1	Carbohydrate	binding	module	(family	35)
Filamin	PF00630.19	gi|564291117|ref|YP_008877450.1|	-	0.016	16.0	0.0	31	5.5	0.0	3.4	3	0	0	3	3	3	0	Filamin/ABP280	repeat
DUF4249	PF14054.6	gi|564291117|ref|YP_008877450.1|	-	0.041	13.5	0.1	0.091	12.4	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4249)
DUF2799	PF10973.8	gi|564291117|ref|YP_008877450.1|	-	0.1	13.0	0.7	0.25	11.8	0.7	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2799)
Inhibitor_I42	PF09394.10	gi|564291117|ref|YP_008877450.1|	-	0.19	12.2	2.2	0.82	10.1	0.1	3.2	4	0	0	4	4	3	0	Chagasin	family	peptidase	inhibitor	I42
Methyltransf_25	PF13649.6	gi|564291118|ref|YP_008877451.1|	-	1.7e-16	60.7	0.0	3e-16	59.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564291118|ref|YP_008877451.1|	-	6e-16	58.9	0.0	1e-15	58.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564291118|ref|YP_008877451.1|	-	1.3e-09	38.0	0.0	1.7e-09	37.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564291118|ref|YP_008877451.1|	-	1.7e-07	31.3	0.0	2.3e-07	30.8	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564291118|ref|YP_008877451.1|	-	2e-07	31.7	0.0	3.4e-07	30.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564291118|ref|YP_008877451.1|	-	0.00011	21.6	0.0	0.00022	20.7	0.0	1.5	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
CMAS	PF02353.20	gi|564291118|ref|YP_008877451.1|	-	0.0011	18.3	0.0	0.0017	17.7	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_8	PF05148.15	gi|564291118|ref|YP_008877451.1|	-	0.0014	18.5	0.0	0.0021	18.0	0.0	1.2	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Pox_MCEL	PF03291.16	gi|564291118|ref|YP_008877451.1|	-	0.0023	17.1	0.0	0.016	14.4	0.0	1.9	2	0	0	2	2	2	1	mRNA	capping	enzyme
MTS	PF05175.14	gi|564291118|ref|YP_008877451.1|	-	0.051	13.1	0.0	0.08	12.5	0.0	1.3	1	1	0	1	1	1	0	Methyltransferase	small	domain
SnoaL_3	PF13474.6	gi|564291119|ref|YP_008877452.1|	-	5.3e-06	26.7	1.5	6.2e-06	26.5	1.5	1.1	1	0	0	1	1	1	1	SnoaL-like	domain
DUF3225	PF11533.8	gi|564291119|ref|YP_008877452.1|	-	0.046	13.4	0.3	0.18	11.5	0.3	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3225)
NTF2	PF02136.20	gi|564291119|ref|YP_008877452.1|	-	0.093	13.3	0.0	0.12	12.9	0.0	1.2	1	0	0	1	1	1	0	Nuclear	transport	factor	2	(NTF2)	domain
MutS_V	PF00488.21	gi|564291120|ref|YP_008877453.1|	-	3.6e-82	275.0	0.0	6.1e-82	274.2	0.0	1.4	1	0	0	1	1	1	1	MutS	domain	V
MutS_III	PF05192.18	gi|564291120|ref|YP_008877453.1|	-	1.6e-35	123.0	5.1	2.6e-35	122.4	5.1	1.3	1	0	0	1	1	1	1	MutS	domain	III
MutS_I	PF01624.20	gi|564291120|ref|YP_008877453.1|	-	2e-26	92.5	0.0	3.7e-26	91.6	0.0	1.5	1	0	0	1	1	1	1	MutS	domain	I
MutS_IV	PF05190.18	gi|564291120|ref|YP_008877453.1|	-	1.2e-25	89.6	0.9	2.5e-25	88.7	0.9	1.5	1	0	0	1	1	1	1	MutS	family	domain	IV
MutS_II	PF05188.17	gi|564291120|ref|YP_008877453.1|	-	2.4e-21	76.5	0.0	6.2e-21	75.1	0.0	1.7	1	0	0	1	1	1	1	MutS	domain	II
AAA_14	PF13173.6	gi|564291120|ref|YP_008877453.1|	-	0.14	12.2	0.0	0.56	10.3	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
HATPase_c	PF02518.26	gi|564291121|ref|YP_008877454.1|	-	8.6e-18	64.9	0.0	2.6e-17	63.3	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|564291121|ref|YP_008877454.1|	-	2.2e-16	60.4	0.4	1.2e-15	58.0	0.4	2.4	1	0	0	1	1	1	1	GAF	domain
Response_reg	PF00072.24	gi|564291121|ref|YP_008877454.1|	-	5.9e-16	58.6	0.0	1.7e-15	57.1	0.0	1.8	1	0	0	1	1	1	1	Response	regulator	receiver	domain
PAS_4	PF08448.10	gi|564291121|ref|YP_008877454.1|	-	2e-15	57.0	0.4	8e-15	55.0	0.4	2.1	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|564291121|ref|YP_008877454.1|	-	4.9e-14	52.1	0.1	4.9e-14	52.1	0.1	2.9	3	0	0	3	3	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|564291121|ref|YP_008877454.1|	-	2.8e-10	40.4	0.0	6.8e-10	39.1	0.0	1.7	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|564291121|ref|YP_008877454.1|	-	1.5e-06	28.1	0.0	7.1e-06	26.0	0.0	2.2	2	0	0	2	2	2	1	PAS	fold
PAS_3	PF08447.12	gi|564291121|ref|YP_008877454.1|	-	1.1e-05	25.6	0.0	8.6e-05	22.8	0.0	2.5	3	0	0	3	3	3	1	PAS	fold
GAF_3	PF13492.6	gi|564291121|ref|YP_008877454.1|	-	1.5e-05	25.3	0.0	2.9e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	GAF	domain
OKR_DC_1_N	PF03709.15	gi|564291121|ref|YP_008877454.1|	-	3.9e-05	23.9	0.1	0.00019	21.7	0.0	2.2	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
HATPase_c_2	PF13581.6	gi|564291121|ref|YP_008877454.1|	-	0.0089	16.0	0.1	0.029	14.3	0.1	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
SPOB_a	PF14689.6	gi|564291121|ref|YP_008877454.1|	-	0.16	11.7	0.0	0.36	10.6	0.0	1.5	1	0	0	1	1	1	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
ABC_tran	PF00005.27	gi|564291122|ref|YP_008877455.1|	-	4.5e-30	105.0	0.0	7.8e-30	104.2	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564291122|ref|YP_008877455.1|	-	6.1e-10	39.4	4.1	7.2e-06	26.0	0.1	2.8	2	1	1	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
MukB	PF04310.12	gi|564291122|ref|YP_008877455.1|	-	0.0034	17.2	0.0	0.0055	16.5	0.0	1.3	1	0	0	1	1	1	1	MukB	N-terminal
AAA_29	PF13555.6	gi|564291122|ref|YP_008877455.1|	-	0.0073	16.0	0.2	0.014	15.2	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF4162	PF13732.6	gi|564291122|ref|YP_008877455.1|	-	0.0097	16.6	0.0	0.023	15.4	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.6	gi|564291122|ref|YP_008877455.1|	-	0.021	15.3	0.4	0.038	14.5	0.4	1.5	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|564291122|ref|YP_008877455.1|	-	0.022	14.2	2.1	0.29	10.5	2.1	2.1	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564291122|ref|YP_008877455.1|	-	0.023	15.1	0.1	0.063	13.7	0.1	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564291122|ref|YP_008877455.1|	-	0.026	15.0	0.1	0.092	13.2	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|564291122|ref|YP_008877455.1|	-	0.053	13.4	0.9	0.67	9.8	0.0	2.6	2	1	1	3	3	3	0	NTPase
AAA_19	PF13245.6	gi|564291122|ref|YP_008877455.1|	-	0.088	13.1	0.1	0.15	12.4	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|564291122|ref|YP_008877455.1|	-	0.089	12.5	0.0	0.3	10.8	0.0	1.9	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.6	gi|564291122|ref|YP_008877455.1|	-	0.13	12.5	2.1	1.1	9.5	2.1	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|564291122|ref|YP_008877455.1|	-	0.13	12.0	0.0	0.28	10.9	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|564291122|ref|YP_008877455.1|	-	0.15	12.0	0.1	5.5	7.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
ABC2_membrane_3	PF12698.7	gi|564291123|ref|YP_008877456.1|	-	0.19	10.8	19.5	0.006	15.7	12.8	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
LolA_like	PF17131.4	gi|564291124|ref|YP_008877457.1|	-	4.2e-07	29.9	0.3	0.00014	21.7	0.1	2.7	2	1	1	3	3	3	2	Outer	membrane	lipoprotein-sorting	protein
MucB_RseB	PF03888.14	gi|564291124|ref|YP_008877457.1|	-	0.0066	16.0	0.1	0.015	14.9	0.0	1.6	2	0	0	2	2	2	1	MucB/RseB	N-terminal	domain
Rieske_3	PF18465.1	gi|564291124|ref|YP_008877457.1|	-	0.027	14.7	1.5	5.6	7.3	0.1	2.6	3	0	0	3	3	3	0	Rieske	3Fe-4S
LolA_like	PF17131.4	gi|564291125|ref|YP_008877458.1|	-	5.5e-08	32.8	2.5	3.3e-05	23.7	0.0	3.2	2	1	1	3	3	3	2	Outer	membrane	lipoprotein-sorting	protein
MucB_RseB	PF03888.14	gi|564291125|ref|YP_008877458.1|	-	9.5e-05	22.0	0.1	0.00026	20.6	0.0	2.1	2	1	0	2	2	2	1	MucB/RseB	N-terminal	domain
PA14	PF07691.12	gi|564291125|ref|YP_008877458.1|	-	0.021	14.7	1.2	0.039	13.8	0.3	2.0	2	0	0	2	2	2	0	PA14	domain
Pilin_N	PF07790.11	gi|564291125|ref|YP_008877458.1|	-	0.071	14.0	0.7	0.28	12.2	0.7	2.0	1	0	0	1	1	1	0	Archaeal	Type	IV	pilin,	N-terminal
HTH_20	PF12840.7	gi|564291126|ref|YP_008877459.1|	-	2e-10	40.6	0.0	3.3e-10	39.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564291126|ref|YP_008877459.1|	-	3.7e-06	26.7	0.0	6.6e-06	25.9	0.0	1.5	1	1	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|564291126|ref|YP_008877459.1|	-	6.6e-06	25.8	0.0	1.2e-05	25.0	0.0	1.5	1	1	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564291126|ref|YP_008877459.1|	-	1.7e-05	24.3	0.0	3.3e-05	23.4	0.0	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564291126|ref|YP_008877459.1|	-	0.00014	21.7	0.0	0.0004	20.2	0.0	1.8	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.6	gi|564291126|ref|YP_008877459.1|	-	0.00025	21.0	0.0	0.00038	20.4	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564291126|ref|YP_008877459.1|	-	0.00036	20.4	0.0	0.00056	19.8	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|564291126|ref|YP_008877459.1|	-	0.00053	19.8	0.0	0.00076	19.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|564291126|ref|YP_008877459.1|	-	0.0012	18.6	0.0	0.0022	17.8	0.0	1.6	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_36	PF13730.6	gi|564291126|ref|YP_008877459.1|	-	0.0017	18.3	0.0	0.0029	17.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
FUR	PF01475.19	gi|564291126|ref|YP_008877459.1|	-	0.0038	17.4	0.0	0.0045	17.1	0.0	1.2	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
MarR	PF01047.22	gi|564291126|ref|YP_008877459.1|	-	0.018	15.0	0.0	0.033	14.1	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_23	PF13384.6	gi|564291126|ref|YP_008877459.1|	-	0.019	14.8	0.0	0.03	14.1	0.0	1.3	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF1492	PF07374.11	gi|564291126|ref|YP_008877459.1|	-	0.02	15.0	0.0	0.029	14.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1492)
Pro-kuma_activ	PF09286.11	gi|564291126|ref|YP_008877459.1|	-	0.046	14.0	0.0	0.056	13.7	0.0	1.1	1	0	0	1	1	1	0	Pro-kumamolisin,	activation	domain
DUF2250	PF10007.9	gi|564291126|ref|YP_008877459.1|	-	0.049	13.7	0.0	0.068	13.3	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
ArsR	PF09824.9	gi|564291126|ref|YP_008877459.1|	-	0.063	12.9	0.0	0.081	12.5	0.0	1.1	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|564291126|ref|YP_008877459.1|	-	0.079	13.2	0.1	0.12	12.6	0.1	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
B-block_TFIIIC	PF04182.12	gi|564291126|ref|YP_008877459.1|	-	0.1	12.7	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Sigma70_r4_2	PF08281.12	gi|564291126|ref|YP_008877459.1|	-	0.18	11.5	0.0	0.24	11.1	0.0	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF3995	PF13160.6	gi|564291127|ref|YP_008877460.1|	-	0.031	14.7	2.1	0.047	14.0	2.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3995)
Cation_efflux	PF01545.21	gi|564291127|ref|YP_008877460.1|	-	0.035	13.8	0.9	0.042	13.6	0.9	1.1	1	0	0	1	1	1	0	Cation	efflux	family
DUF5353	PF17304.2	gi|564291127|ref|YP_008877460.1|	-	0.41	10.4	3.1	0.62	9.9	2.0	1.9	2	1	0	2	2	2	0	Family	of	unknown	function	(DUF5353)
SUR7	PF06687.12	gi|564291127|ref|YP_008877460.1|	-	0.74	9.4	3.5	0.29	10.7	1.0	1.5	1	1	1	2	2	2	0	SUR7/PalI	family
DUF202	PF02656.15	gi|564291127|ref|YP_008877460.1|	-	1	9.8	7.1	30	5.2	7.1	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
Oxidored_molyb	PF00174.19	gi|564291128|ref|YP_008877461.1|	-	0.0009	18.9	0.0	0.0022	17.6	0.0	1.6	1	1	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
Hydrolase_3	PF08282.12	gi|564291131|ref|YP_008877464.1|	-	1.5e-09	37.9	0.0	0.0012	18.6	0.0	2.2	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564291131|ref|YP_008877464.1|	-	0.0091	16.4	0.6	5	7.5	0.0	2.8	2	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.13	gi|564291131|ref|YP_008877464.1|	-	0.14	11.7	0.1	0.66	9.5	0.0	1.9	2	0	0	2	2	2	0	Sucrose-6F-phosphate	phosphohydrolase
MutL_C	PF08676.11	gi|564291133|ref|YP_008877466.1|	-	1e-36	125.9	0.0	1.5e-36	125.4	0.0	1.3	1	0	0	1	1	1	1	MutL	C	terminal	dimerisation	domain
DNA_mis_repair	PF01119.19	gi|564291133|ref|YP_008877466.1|	-	6.1e-31	106.6	0.0	1e-30	105.8	0.0	1.4	1	0	0	1	1	1	1	DNA	mismatch	repair	protein,	C-terminal	domain
HATPase_c_3	PF13589.6	gi|564291133|ref|YP_008877466.1|	-	3.2e-12	46.4	0.1	6.5e-12	45.5	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.26	gi|564291133|ref|YP_008877466.1|	-	9.1e-07	29.4	0.1	1.9e-06	28.4	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SOG2	PF10428.9	gi|564291133|ref|YP_008877466.1|	-	0.046	12.9	5.1	0.06	12.5	5.1	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
SPX	PF03105.19	gi|564291133|ref|YP_008877466.1|	-	5.7	6.7	13.7	7.8	6.3	13.7	1.2	1	0	0	1	1	1	0	SPX	domain
PfkB	PF00294.24	gi|564291134|ref|YP_008877467.1|	-	1.2e-29	103.6	0.2	1.5e-29	103.3	0.2	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Oxidored_nitro	PF00148.19	gi|564291134|ref|YP_008877467.1|	-	0.093	11.4	0.0	0.13	10.9	0.0	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
CarboxypepD_reg	PF13620.6	gi|564291403|ref|YP_008877468.1|	-	4.5e-22	78.1	38.2	5.8e-10	39.3	1.2	4.9	3	2	2	5	5	5	4	Carboxypeptidase	regulatory-like	domain
Big_1	PF02369.16	gi|564291403|ref|YP_008877468.1|	-	3.7e-08	33.3	2.7	3.7e-08	33.3	2.7	6.9	5	1	2	7	7	6	3	Bacterial	Ig-like	domain	(group	1)
Invasin_D3	PF09134.10	gi|564291403|ref|YP_008877468.1|	-	6.7e-08	32.7	31.4	0.0012	19.1	1.0	4.6	3	1	1	4	4	4	3	Invasin,	domain	3
PEGA	PF08308.11	gi|564291403|ref|YP_008877468.1|	-	1.3e-07	31.4	12.9	0.00089	19.1	0.1	4.2	5	0	0	5	5	4	2	PEGA	domain
DUF4198	PF10670.9	gi|564291403|ref|YP_008877468.1|	-	4.6e-07	30.4	8.8	0.15	12.4	0.1	3.6	2	1	0	3	3	3	3	Domain	of	unknown	function	(DUF4198)
CarbopepD_reg_2	PF13715.6	gi|564291403|ref|YP_008877468.1|	-	9.7e-07	28.7	11.5	0.032	14.2	0.1	4.1	2	1	2	4	4	4	2	CarboxypepD_reg-like	domain
DUF824	PF05688.11	gi|564291403|ref|YP_008877468.1|	-	2.9e-06	27.0	10.0	0.025	14.4	0.1	4.5	5	0	0	5	5	5	2	Salmonella	repeat	of	unknown	function	(DUF824)
MG4	PF17789.1	gi|564291403|ref|YP_008877468.1|	-	5.9e-06	26.3	10.3	0.041	14.0	0.0	5.0	3	3	2	5	5	5	1	Macroglobulin	domain	MG4
Ig_3	PF13927.6	gi|564291403|ref|YP_008877468.1|	-	2.4e-05	24.9	2.3	0.17	12.5	0.1	4.2	4	1	1	5	5	4	2	Immunoglobulin	domain
PGF-CTERM	PF18204.1	gi|564291403|ref|YP_008877468.1|	-	4.1e-05	23.4	4.8	9.8e-05	22.2	4.8	1.7	1	0	0	1	1	1	1	PGF-CTERM	motif
DUF4249	PF14054.6	gi|564291403|ref|YP_008877468.1|	-	0.00034	20.3	19.1	0.029	14.0	2.0	3.4	1	1	2	3	3	3	2	Domain	of	unknown	function	(DUF4249)
YtkA	PF13115.6	gi|564291403|ref|YP_008877468.1|	-	0.0088	16.6	14.1	0.92	10.2	0.1	4.9	3	2	2	5	5	5	2	YtkA-like
Big_2	PF02368.18	gi|564291403|ref|YP_008877468.1|	-	0.0096	15.8	10.0	0.0096	15.8	10.0	4.8	5	0	0	5	5	4	1	Bacterial	Ig-like	domain	(group	2)
BiPBP_C	PF06832.12	gi|564291403|ref|YP_008877468.1|	-	0.027	14.5	0.2	3.1	7.9	0.0	3.6	3	0	0	3	3	3	0	Penicillin-Binding	Protein	C-terminus	Family
fn3_3	PF14686.6	gi|564291403|ref|YP_008877468.1|	-	0.051	13.4	3.6	0.15	11.9	0.8	2.9	2	0	0	2	2	2	0	Polysaccharide	lyase	family	4,	domain	II
DUF4175	PF13779.6	gi|564291403|ref|YP_008877468.1|	-	0.21	9.5	3.5	1.1	7.1	0.6	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4175)
Vg_Tdu	PF07545.14	gi|564291403|ref|YP_008877468.1|	-	0.52	10.1	1.8	0.95	9.3	0.4	2.1	2	0	0	2	2	2	0	Vestigial/Tondu	family
DUF5114	PF17141.4	gi|564291403|ref|YP_008877468.1|	-	6.8	7.3	11.0	1.3	9.6	3.7	3.2	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF5114)
GCV_T	PF01571.21	gi|564291135|ref|YP_008877469.1|	-	2.1e-39	135.4	0.0	2.9e-39	135.0	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|564291135|ref|YP_008877469.1|	-	7.7e-13	48.2	0.0	1.6e-12	47.2	0.0	1.6	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
UPF0029	PF01205.19	gi|564291136|ref|YP_008877470.1|	-	7.9e-29	100.1	0.0	1.1e-28	99.7	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0029
DUF1949	PF09186.11	gi|564291136|ref|YP_008877470.1|	-	2.8e-10	39.9	0.5	1.3e-09	37.8	0.0	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1949)
EFG_C	PF00679.24	gi|564291136|ref|YP_008877470.1|	-	2.4e-05	24.3	0.0	5.6e-05	23.1	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
Fer2	PF00111.27	gi|564291137|ref|YP_008877471.1|	-	3.5e-07	30.1	0.0	5.4e-07	29.5	0.0	1.4	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|564291137|ref|YP_008877471.1|	-	0.0037	17.3	0.4	0.022	14.8	0.4	1.9	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
ACT	PF01842.25	gi|564291138|ref|YP_008877472.1|	-	2.1e-08	33.8	0.8	4.8e-08	32.6	0.2	1.9	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|564291138|ref|YP_008877472.1|	-	8.5e-05	23.1	0.8	0.001	19.6	0.2	2.5	2	1	0	2	2	2	1	ACT	domain
ACT_7	PF13840.6	gi|564291138|ref|YP_008877472.1|	-	0.002	17.9	0.2	0.0046	16.7	0.1	1.6	2	0	0	2	2	2	1	ACT	domain
IGPD	PF00475.18	gi|564291139|ref|YP_008877473.1|	-	4.6e-61	205.3	1.3	4.6e-61	205.3	1.3	1.4	2	0	0	2	2	2	1	Imidazoleglycerol-phosphate	dehydratase
Abhydrolase_1	PF00561.20	gi|564291140|ref|YP_008877474.1|	-	1.2e-14	54.5	0.1	4.4e-11	42.9	0.3	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_6	PF12697.7	gi|564291140|ref|YP_008877474.1|	-	3.6e-10	40.8	15.3	4.3e-10	40.6	15.3	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.8	gi|564291140|ref|YP_008877474.1|	-	7.6e-08	31.9	0.3	2.3e-07	30.3	0.3	1.7	1	1	0	1	1	1	1	Serine	aminopeptidase,	S33
Na_H_Exchanger	PF00999.21	gi|564291141|ref|YP_008877475.1|	-	1.9e-32	112.5	47.8	2.6e-32	112.1	47.8	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
TrkA_N	PF02254.18	gi|564291141|ref|YP_008877475.1|	-	4.2e-28	97.9	3.7	1.1e-27	96.6	3.7	1.8	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564291141|ref|YP_008877475.1|	-	3.7e-10	39.5	1.5	1.2e-09	37.9	0.0	2.6	3	0	0	3	3	2	1	TrkA-C	domain
NAD_binding_7	PF13241.6	gi|564291141|ref|YP_008877475.1|	-	5e-06	26.9	0.7	1.5e-05	25.4	0.7	1.8	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|564291141|ref|YP_008877475.1|	-	0.00059	19.2	1.4	0.00059	19.2	1.4	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|564291141|ref|YP_008877475.1|	-	0.00077	19.1	0.1	0.0014	18.3	0.1	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Epimerase	PF01370.21	gi|564291141|ref|YP_008877475.1|	-	0.0016	17.9	0.4	0.0026	17.3	0.4	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
FAD_binding_3	PF01494.19	gi|564291141|ref|YP_008877475.1|	-	0.0021	17.3	0.1	0.004	16.5	0.1	1.5	1	0	0	1	1	1	1	FAD	binding	domain
NAD_binding_2	PF03446.15	gi|564291141|ref|YP_008877475.1|	-	0.0028	17.8	0.5	0.01	16.0	0.4	2.0	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|564291141|ref|YP_008877475.1|	-	0.0054	16.6	0.3	0.0054	16.6	0.3	1.8	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DFP	PF04127.15	gi|564291141|ref|YP_008877475.1|	-	0.0095	15.8	1.4	0.0095	15.8	1.4	1.8	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
ApbA	PF02558.16	gi|564291141|ref|YP_008877475.1|	-	0.0098	15.5	0.1	0.024	14.3	0.1	1.7	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
XdhC_C	PF13478.6	gi|564291141|ref|YP_008877475.1|	-	0.02	15.4	0.4	0.063	13.8	0.4	2.0	1	0	0	1	1	1	0	XdhC	Rossmann	domain
NAD_binding_10	PF13460.6	gi|564291141|ref|YP_008877475.1|	-	0.056	13.3	10.3	0.2	11.6	7.4	2.5	1	1	1	2	2	2	0	NAD(P)H-binding
Sacchrp_dh_NADP	PF03435.18	gi|564291141|ref|YP_008877475.1|	-	0.06	13.6	1.3	0.27	11.5	1.3	2.0	1	1	0	1	1	1	0	Saccharopine	dehydrogenase	NADP	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564291141|ref|YP_008877475.1|	-	0.081	12.3	0.0	0.22	10.8	0.0	1.7	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
tRNA-synt_2c	PF01411.19	gi|564291143|ref|YP_008877477.1|	-	1.9e-117	393.1	0.0	2.4e-117	392.8	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
DHHA1	PF02272.19	gi|564291143|ref|YP_008877477.1|	-	3.3e-17	63.2	2.4	7.1e-17	62.1	2.4	1.6	1	0	0	1	1	1	1	DHHA1	domain
tRNA_SAD	PF07973.14	gi|564291143|ref|YP_008877477.1|	-	1.3e-13	50.8	0.4	2.5e-13	49.9	0.4	1.5	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
Arch_flagellin	PF01917.16	gi|564291144|ref|YP_008877478.1|	-	1.1e-36	126.5	3.8	1.3e-36	126.3	3.8	1.1	1	0	0	1	1	1	1	Archaebacterial	flagellin
DUF929	PF06053.11	gi|564291144|ref|YP_008877478.1|	-	0.072	12.4	0.2	0.42	9.9	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF929)
Rep_fac_C	PF08542.11	gi|564291145|ref|YP_008877479.1|	-	1.7e-23	82.8	0.0	3.9e-23	81.7	0.0	1.6	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.29	gi|564291145|ref|YP_008877479.1|	-	5.9e-20	72.0	0.0	1e-18	68.0	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.6	gi|564291145|ref|YP_008877479.1|	-	2.7e-16	59.8	0.0	6.4e-13	48.8	0.0	2.2	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
RuvB_N	PF05496.12	gi|564291145|ref|YP_008877479.1|	-	1e-07	31.8	0.0	1.2e-06	28.4	0.0	2.3	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|564291145|ref|YP_008877479.1|	-	4.9e-07	30.3	0.1	0.0005	20.5	0.0	2.7	1	1	1	2	2	2	2	AAA	ATPase	domain
Rad17	PF03215.15	gi|564291145|ref|YP_008877479.1|	-	1.5e-06	28.3	0.0	2.4e-06	27.6	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_14	PF13173.6	gi|564291145|ref|YP_008877479.1|	-	3.3e-06	27.2	0.0	6.4e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_assoc_2	PF16193.5	gi|564291145|ref|YP_008877479.1|	-	1.5e-05	25.3	0.2	5e-05	23.6	0.2	2.0	1	0	0	1	1	1	1	AAA	C-terminal	domain
AAA_22	PF13401.6	gi|564291145|ref|YP_008877479.1|	-	3.6e-05	24.1	0.4	0.16	12.2	0.1	2.9	2	1	1	3	3	3	2	AAA	domain
ResIII	PF04851.15	gi|564291145|ref|YP_008877479.1|	-	0.00015	21.8	0.0	0.0014	18.6	0.0	2.0	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_3	PF07726.11	gi|564291145|ref|YP_008877479.1|	-	0.00022	21.1	0.0	0.00051	19.9	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.17	gi|564291145|ref|YP_008877479.1|	-	0.0007	19.4	0.0	0.0063	16.3	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.21	gi|564291145|ref|YP_008877479.1|	-	0.00094	18.6	0.0	0.13	11.6	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
DNA_pol3_delta	PF06144.13	gi|564291145|ref|YP_008877479.1|	-	0.001	18.9	0.0	0.0017	18.2	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Sigma54_activat	PF00158.26	gi|564291145|ref|YP_008877479.1|	-	0.001	18.8	0.0	0.029	14.1	0.0	2.2	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|564291145|ref|YP_008877479.1|	-	0.0011	18.6	0.0	0.0018	17.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
TIP49	PF06068.13	gi|564291145|ref|YP_008877479.1|	-	0.0031	16.8	0.0	0.013	14.7	0.0	1.8	1	1	1	2	2	2	1	TIP49	P-loop	domain
AAA_5	PF07728.14	gi|564291145|ref|YP_008877479.1|	-	0.0046	17.0	0.0	0.039	13.9	0.0	2.4	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.6	gi|564291145|ref|YP_008877479.1|	-	0.0055	17.3	0.0	0.018	15.6	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
Sigma54_activ_2	PF14532.6	gi|564291145|ref|YP_008877479.1|	-	0.0086	16.2	0.0	0.022	14.9	0.0	1.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_30	PF13604.6	gi|564291145|ref|YP_008877479.1|	-	0.012	15.3	0.1	0.039	13.7	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
T2SSE	PF00437.20	gi|564291145|ref|YP_008877479.1|	-	0.013	14.6	0.0	0.025	13.6	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|564291145|ref|YP_008877479.1|	-	0.022	14.7	0.0	0.6	10.0	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
PhoH	PF02562.16	gi|564291145|ref|YP_008877479.1|	-	0.022	14.2	0.0	0.1	12.0	0.0	2.0	2	0	0	2	2	2	0	PhoH-like	protein
AAA_24	PF13479.6	gi|564291145|ref|YP_008877479.1|	-	0.031	14.0	0.0	0.059	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564291145|ref|YP_008877479.1|	-	0.043	13.4	0.6	0.27	10.8	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
DUF3400	PF11880.8	gi|564291145|ref|YP_008877479.1|	-	0.048	13.2	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3400)
RNA_helicase	PF00910.22	gi|564291145|ref|YP_008877479.1|	-	0.05	14.0	0.0	0.1	13.0	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Viral_helicase1	PF01443.18	gi|564291145|ref|YP_008877479.1|	-	0.053	13.2	0.0	0.082	12.6	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_2	PF07724.14	gi|564291145|ref|YP_008877479.1|	-	0.065	13.3	0.0	0.13	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
TrwB_AAD_bind	PF10412.9	gi|564291145|ref|YP_008877479.1|	-	0.068	12.1	0.0	0.64	8.9	0.0	2.0	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_19	PF13245.6	gi|564291145|ref|YP_008877479.1|	-	0.074	13.4	0.0	0.18	12.1	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.6	gi|564291145|ref|YP_008877479.1|	-	0.076	13.5	0.0	0.11	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_11	PF13086.6	gi|564291145|ref|YP_008877479.1|	-	0.077	12.8	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|564291145|ref|YP_008877479.1|	-	0.079	12.7	0.0	0.16	11.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SNF2_N	PF00176.23	gi|564291145|ref|YP_008877479.1|	-	0.085	11.6	0.0	0.13	10.9	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
DUF815	PF05673.13	gi|564291145|ref|YP_008877479.1|	-	0.088	12.0	0.0	0.15	11.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
NB-ARC	PF00931.22	gi|564291145|ref|YP_008877479.1|	-	0.094	11.9	0.0	0.15	11.2	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_33	PF13671.6	gi|564291145|ref|YP_008877479.1|	-	0.12	12.5	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Acetyltransf_7	PF13508.7	gi|564291146|ref|YP_008877480.1|	-	8.7e-10	38.9	0.0	1.1e-09	38.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.7	gi|564291146|ref|YP_008877480.1|	-	6.5e-09	35.8	0.0	7.3e-09	35.6	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_1	PF00583.25	gi|564291146|ref|YP_008877480.1|	-	1.1e-08	35.3	0.0	1.5e-08	34.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_9	PF13527.7	gi|564291146|ref|YP_008877480.1|	-	0.0016	18.5	0.0	0.0092	16.1	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.6	gi|564291146|ref|YP_008877480.1|	-	0.0049	17.0	0.0	0.0077	16.3	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
FR47	PF08445.10	gi|564291146|ref|YP_008877480.1|	-	0.01	15.8	0.3	0.22	11.5	0.2	2.6	1	1	1	2	2	2	0	FR47-like	protein
RDD	PF06271.12	gi|564291404|ref|YP_008877481.1|	-	3.8e-15	56.3	9.0	1.1e-14	54.8	9.0	1.7	1	1	0	1	1	1	1	RDD	family
PGM_PMM_I	PF02878.16	gi|564291147|ref|YP_008877482.1|	-	1.2e-33	115.7	0.0	2.3e-33	114.8	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_III	PF02880.16	gi|564291147|ref|YP_008877482.1|	-	7.5e-25	87.3	0.0	1.3e-24	86.5	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_II	PF02879.16	gi|564291147|ref|YP_008877482.1|	-	2e-23	82.9	0.2	4.9e-23	81.7	0.2	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_IV	PF00408.20	gi|564291147|ref|YP_008877482.1|	-	5.2e-17	61.8	1.3	1.4e-16	60.4	0.2	2.4	3	0	0	3	3	3	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Cu_amine_oxid	PF01179.20	gi|564291147|ref|YP_008877482.1|	-	0.3	9.9	0.0	0.45	9.4	0.0	1.1	1	0	0	1	1	1	0	Copper	amine	oxidase,	enzyme	domain
GIY-YIG	PF01541.24	gi|564291148|ref|YP_008877483.1|	-	1.2e-17	63.9	0.1	1.5e-17	63.6	0.1	1.1	1	0	0	1	1	1	1	GIY-YIG	catalytic	domain
T5orf172	PF10544.9	gi|564291148|ref|YP_008877483.1|	-	0.014	15.9	0.1	0.018	15.5	0.1	1.2	1	0	0	1	1	1	0	T5orf172	domain
DZR	PF12773.7	gi|564291149|ref|YP_008877484.1|	-	0.0036	17.3	0.5	0.0047	16.9	0.5	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564291149|ref|YP_008877484.1|	-	0.0079	15.6	3.7	0.27	10.7	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
Lar_restr_allev	PF14354.6	gi|564291149|ref|YP_008877484.1|	-	0.02	15.3	1.0	0.023	15.0	1.0	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-tcix	PF14952.6	gi|564291149|ref|YP_008877484.1|	-	0.023	14.3	1.6	0.11	12.2	0.1	2.0	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Zn-ribbon_8	PF09723.10	gi|564291149|ref|YP_008877484.1|	-	0.024	14.7	2.9	0.061	13.5	2.9	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-RING_7	PF02591.15	gi|564291149|ref|YP_008877484.1|	-	0.04	14.1	1.7	7.5	6.8	0.2	2.4	2	0	0	2	2	2	0	C4-type	zinc	ribbon	domain
DUF3268	PF11672.8	gi|564291149|ref|YP_008877484.1|	-	0.074	13.4	0.2	0.081	13.3	0.2	1.1	1	0	0	1	1	1	0	zinc-finger-containing	domain
zinc_ribbon_2	PF13240.6	gi|564291149|ref|YP_008877484.1|	-	0.14	11.9	3.1	3.2	7.6	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.11	gi|564291149|ref|YP_008877484.1|	-	0.25	11.0	5.4	0.39	10.4	0.2	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
AIRC	PF00731.20	gi|564291150|ref|YP_008877485.1|	-	4.2e-14	52.4	2.4	4.2e-14	52.4	2.4	1.7	2	0	0	2	2	2	1	AIR	carboxylase
DUF1931	PF09123.11	gi|564291151|ref|YP_008877486.1|	-	0.00024	21.2	0.7	0.00028	21.0	0.7	1.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1931)
CBFD_NFYB_HMF	PF00808.23	gi|564291151|ref|YP_008877486.1|	-	0.0004	20.6	0.0	0.00048	20.3	0.0	1.4	1	1	0	1	1	1	1	Histone-like	transcription	factor	(CBF/NF-Y)	and	archaeal	histone
Histone	PF00125.24	gi|564291151|ref|YP_008877486.1|	-	0.015	15.7	0.1	0.016	15.6	0.1	1.1	1	0	0	1	1	1	0	Core	histone	H2A/H2B/H3/H4
DctP	PF03480.13	gi|564291151|ref|YP_008877486.1|	-	0.034	13.5	0.1	0.036	13.4	0.1	1.1	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein,	family	7
Rib_5-P_isom_A	PF06026.14	gi|564291152|ref|YP_008877487.1|	-	3.7e-64	215.5	0.0	4.4e-64	215.2	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.22	gi|564291152|ref|YP_008877487.1|	-	1.8e-05	24.8	0.2	0.00016	21.7	0.1	2.1	2	0	0	2	2	2	1	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.13	gi|564291152|ref|YP_008877487.1|	-	0.089	11.9	0.1	0.14	11.2	0.1	1.3	1	0	0	1	1	1	0	Putative	sugar-binding	domain
PGM_PMM_I	PF02878.16	gi|564291154|ref|YP_008877489.1|	-	8.1e-33	113.1	0.0	1.4e-32	112.3	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.16	gi|564291154|ref|YP_008877489.1|	-	1.3e-18	67.5	0.2	4.1e-18	65.9	0.2	1.9	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.16	gi|564291154|ref|YP_008877489.1|	-	2.2e-16	60.1	0.0	1e-15	57.9	0.0	2.0	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.20	gi|564291154|ref|YP_008877489.1|	-	4.8e-11	42.7	1.3	1.2e-10	41.4	0.7	2.0	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
OpuAC	PF04069.12	gi|564291154|ref|YP_008877489.1|	-	0.047	13.2	0.3	2.6	7.5	0.0	2.6	3	0	0	3	3	3	0	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
CinA_KH	PF18146.1	gi|564291154|ref|YP_008877489.1|	-	0.13	12.4	0.1	0.6	10.3	0.1	2.2	1	0	0	1	1	1	0	Damage-inducible	protein	CinA	KH	domain
RecR	PF02132.15	gi|564291155|ref|YP_008877490.1|	-	0.0033	16.9	1.9	0.0058	16.2	1.9	1.5	1	1	0	1	1	1	1	RecR	protein
DZR	PF12773.7	gi|564291155|ref|YP_008877490.1|	-	0.004	17.1	1.0	0.006	16.6	1.0	1.3	1	1	0	1	1	1	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.10	gi|564291155|ref|YP_008877490.1|	-	0.034	14.3	2.2	0.062	13.4	2.2	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
TerY_C	PF15616.6	gi|564291155|ref|YP_008877490.1|	-	0.067	13.3	1.0	0.07	13.2	1.0	1.1	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
PADR1	PF08063.12	gi|564291155|ref|YP_008877490.1|	-	0.07	12.9	2.5	0.49	10.2	0.3	2.1	2	0	0	2	2	2	0	PADR1	(NUC008)	domain
zinc_ribbon_2	PF13240.6	gi|564291155|ref|YP_008877490.1|	-	0.2	11.4	5.2	2.1	8.1	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
ATPase	PF06745.13	gi|564291156|ref|YP_008877491.1|	-	0.013	14.9	0.2	0.016	14.5	0.2	1.1	1	0	0	1	1	1	0	KaiC
Type2_restr_D3	PF16902.5	gi|564291156|ref|YP_008877491.1|	-	0.039	13.9	0.7	0.069	13.1	0.3	1.7	1	1	0	1	1	1	0	Type-2	restriction	enzyme	D3	domain
DUF2391	PF09622.10	gi|564291157|ref|YP_008877492.1|	-	5.8e-05	22.6	6.2	9.2e-05	21.9	6.2	1.3	1	1	0	1	1	1	1	Putative	integral	membrane	protein	(DUF2391)
FixP_N	PF14715.6	gi|564291157|ref|YP_008877492.1|	-	0.33	10.7	2.5	0.28	11.0	0.6	1.8	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
UPRTase	PF14681.6	gi|564291158|ref|YP_008877493.1|	-	3.4e-47	160.6	0.1	4e-47	160.3	0.1	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.27	gi|564291158|ref|YP_008877493.1|	-	2.2e-08	33.8	0.4	3e-08	33.3	0.4	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
DctM	PF06808.12	gi|564291159|ref|YP_008877494.1|	-	3.7e-84	283.0	45.9	3.8e-53	180.8	21.4	2.6	2	0	0	2	2	2	2	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
DUF1850	PF08905.11	gi|564291160|ref|YP_008877495.1|	-	1.4e-23	83.1	0.1	1.9e-23	82.6	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1850)
NMT1_3	PF16868.5	gi|564291161|ref|YP_008877496.1|	-	1.3e-68	231.5	2.2	1.6e-68	231.2	2.2	1.0	1	0	0	1	1	1	1	NMT1-like	family
Phosphonate-bd	PF12974.7	gi|564291161|ref|YP_008877496.1|	-	6.2e-09	35.8	1.3	9.3e-09	35.2	1.3	1.3	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.11	gi|564291161|ref|YP_008877496.1|	-	1.1e-08	35.3	1.2	3.4e-08	33.7	0.4	2.1	2	1	0	2	2	2	1	NMT1/THI5	like
TAT_signal	PF10518.9	gi|564291161|ref|YP_008877496.1|	-	4.7e-05	23.1	3.4	0.00011	21.9	3.4	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NMT1_2	PF13379.6	gi|564291161|ref|YP_008877496.1|	-	0.00057	19.7	0.4	0.026	14.2	0.0	2.2	1	1	0	2	2	2	1	NMT1-like	family
UCR_Fe-S_N	PF10399.9	gi|564291161|ref|YP_008877496.1|	-	0.13	11.7	1.0	0.32	10.4	1.0	1.7	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
P_gingi_FimA	PF06321.11	gi|564291161|ref|YP_008877496.1|	-	1.2	9.3	6.6	0.59	10.2	0.2	2.9	2	1	1	3	3	3	0	Major	fimbrial	subunit	protein	(FimA)
DJ-1_PfpI	PF01965.24	gi|564291162|ref|YP_008877497.1|	-	1.9e-13	50.6	0.1	7.2e-12	45.4	0.1	2.1	1	1	0	1	1	1	1	DJ-1/PfpI	family
ThiJ_like	PF17124.5	gi|564291162|ref|YP_008877497.1|	-	3.4e-07	30.2	0.0	7.6e-07	29.0	0.0	1.7	1	1	0	1	1	1	1	ThiJ/PfpI	family-like
Tape_meas_lam_C	PF09718.10	gi|564291163|ref|YP_008877498.1|	-	0.049	13.8	0.1	0.14	12.3	0.1	1.7	1	0	0	1	1	1	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
PHO4	PF01384.20	gi|564291165|ref|YP_008877500.1|	-	4.5e-47	160.7	32.5	4.5e-47	160.7	32.5	1.5	1	1	0	1	1	1	1	Phosphate	transporter	family
DUF1660	PF07874.11	gi|564291166|ref|YP_008877501.1|	-	0.12	12.9	0.2	0.23	12.0	0.2	1.5	1	1	0	1	1	1	0	Prophage	protein	(DUF1660)
FAA_hydrolase	PF01557.18	gi|564291167|ref|YP_008877502.1|	-	0.022	14.4	0.1	0.032	13.9	0.1	1.2	1	0	0	1	1	1	0	Fumarylacetoacetate	(FAA)	hydrolase	family
CstA	PF02554.14	gi|564291168|ref|YP_008877503.1|	-	1e-104	350.5	19.8	1e-104	350.5	19.8	2.2	2	0	0	2	2	2	1	Carbon	starvation	protein	CstA
CstA_5TM	PF13722.6	gi|564291168|ref|YP_008877503.1|	-	9.7e-31	106.6	2.5	9.7e-31	106.6	2.5	3.9	4	0	0	4	4	4	1	5TM	C-terminal	transporter	carbon	starvation	CstA
ArsA_ATPase	PF02374.15	gi|564291169|ref|YP_008877504.1|	-	9.8e-65	218.7	0.0	1.2e-64	218.4	0.0	1.0	1	0	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.23	gi|564291169|ref|YP_008877504.1|	-	1.2e-08	35.1	0.0	4.6e-08	33.2	0.0	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.6	gi|564291169|ref|YP_008877504.1|	-	6.8e-08	32.6	0.0	1.3e-07	31.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ParA	PF10609.9	gi|564291169|ref|YP_008877504.1|	-	0.00079	19.0	0.0	0.056	12.9	0.0	2.2	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
AAA_26	PF13500.6	gi|564291169|ref|YP_008877504.1|	-	0.043	13.6	0.4	0.095	12.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Fer4_NifH	PF00142.18	gi|564291169|ref|YP_008877504.1|	-	0.077	12.4	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
IstB_IS21	PF01695.17	gi|564291169|ref|YP_008877504.1|	-	0.091	12.5	0.1	0.22	11.2	0.1	1.6	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
cobW	PF02492.19	gi|564291170|ref|YP_008877505.1|	-	2.9e-48	163.8	0.3	3.7e-48	163.5	0.3	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CobW_C	PF07683.14	gi|564291170|ref|YP_008877505.1|	-	3.8e-27	94.0	0.0	7.6e-27	93.1	0.0	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	protein	cobW	C-terminal	domain
RsgA_GTPase	PF03193.16	gi|564291170|ref|YP_008877505.1|	-	9.7e-06	25.6	0.1	0.035	14.0	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
GTP_EFTU	PF00009.27	gi|564291170|ref|YP_008877505.1|	-	0.0015	18.1	0.0	0.38	10.3	0.1	2.3	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
AAA_16	PF13191.6	gi|564291170|ref|YP_008877505.1|	-	0.0058	17.0	1.1	0.02	15.3	0.9	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
TsaE	PF02367.17	gi|564291170|ref|YP_008877505.1|	-	0.0071	16.3	0.0	0.015	15.3	0.0	1.5	1	0	0	1	1	1	1	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
TrwB_AAD_bind	PF10412.9	gi|564291170|ref|YP_008877505.1|	-	0.0075	15.2	0.1	0.012	14.5	0.1	1.2	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Zeta_toxin	PF06414.12	gi|564291170|ref|YP_008877505.1|	-	0.012	14.9	0.0	0.023	14.0	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
CbiA	PF01656.23	gi|564291170|ref|YP_008877505.1|	-	0.012	15.6	0.0	0.017	15.2	0.0	1.4	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
T2SSE	PF00437.20	gi|564291170|ref|YP_008877505.1|	-	0.018	14.1	0.2	0.036	13.1	0.2	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_33	PF13671.6	gi|564291170|ref|YP_008877505.1|	-	0.074	13.2	0.0	0.16	12.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.6	gi|564291170|ref|YP_008877505.1|	-	0.088	13.0	0.0	0.26	11.5	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|564291170|ref|YP_008877505.1|	-	0.096	12.6	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.27	gi|564291170|ref|YP_008877505.1|	-	0.12	12.9	0.0	0.28	11.7	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_22	PF13401.6	gi|564291170|ref|YP_008877505.1|	-	0.18	12.1	0.0	0.5	10.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
zinc_ribbon_9	PF14369.6	gi|564291171|ref|YP_008877506.1|	-	0.0011	19.2	1.4	0.0019	18.4	1.4	1.4	1	0	0	1	1	1	1	zinc-ribbon
zinc-ribbons_6	PF07191.12	gi|564291171|ref|YP_008877506.1|	-	0.0013	18.6	1.4	0.0015	18.4	1.4	1.2	1	0	0	1	1	1	1	zinc-ribbons
DZR	PF12773.7	gi|564291171|ref|YP_008877506.1|	-	0.0054	16.7	0.7	0.0074	16.3	0.7	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.19	gi|564291171|ref|YP_008877506.1|	-	0.012	15.6	1.8	0.017	15.1	1.9	1.4	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
TerY_C	PF15616.6	gi|564291171|ref|YP_008877506.1|	-	0.019	15.1	0.4	0.021	15.0	0.4	1.2	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
Zn-ribbon_8	PF09723.10	gi|564291171|ref|YP_008877506.1|	-	0.067	13.3	2.6	0.15	12.2	2.6	1.7	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf_UBZ	PF18439.1	gi|564291171|ref|YP_008877506.1|	-	0.085	12.5	0.9	3.7	7.2	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
DUF983	PF06170.12	gi|564291171|ref|YP_008877506.1|	-	0.51	10.8	0.3	0.51	10.8	0.3	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF983)
Polyketide_cyc2	PF10604.9	gi|564291172|ref|YP_008877507.1|	-	0.00017	21.9	1.7	0.0007	19.9	1.7	1.9	1	1	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
CD20	PF04103.15	gi|564291173|ref|YP_008877508.1|	-	2.9	8.0	7.8	0.36	10.9	4.0	1.5	2	0	0	2	2	2	0	CD20-like	family
Cupin_2	PF07883.11	gi|564291175|ref|YP_008877510.1|	-	1.4e-13	50.4	0.3	1.7e-13	50.0	0.3	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.19	gi|564291175|ref|YP_008877510.1|	-	0.00052	19.9	0.0	0.00066	19.6	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
MannoseP_isomer	PF01050.18	gi|564291175|ref|YP_008877510.1|	-	0.001	19.0	0.0	0.0011	18.8	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_3	PF05899.12	gi|564291175|ref|YP_008877510.1|	-	0.0015	18.2	0.0	0.0018	17.9	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding_2	PF14525.6	gi|564291175|ref|YP_008877510.1|	-	0.0046	16.7	0.0	0.0057	16.4	0.0	1.2	1	0	0	1	1	1	1	AraC-binding-like	domain
Ppnp	PF06865.11	gi|564291175|ref|YP_008877510.1|	-	0.02	15.3	0.0	0.024	15.0	0.0	1.2	1	0	0	1	1	1	0	Pyrimidine/purine	nucleoside	phosphorylase
Cupin_1	PF00190.22	gi|564291175|ref|YP_008877510.1|	-	0.054	13.1	0.0	0.06	12.9	0.0	1.2	1	0	0	1	1	1	0	Cupin
DUF21	PF01595.20	gi|564291176|ref|YP_008877511.1|	-	5e-48	163.1	2.1	7.7e-48	162.5	2.1	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CorC_HlyC	PF03471.17	gi|564291176|ref|YP_008877511.1|	-	3.7e-20	71.7	2.9	3.7e-20	71.7	2.9	1.8	2	0	0	2	2	2	1	Transporter	associated	domain
CBS	PF00571.28	gi|564291176|ref|YP_008877511.1|	-	9.8e-12	45.1	8.2	1.1e-05	25.8	0.0	3.7	4	0	0	4	4	4	2	CBS	domain
MFS_1	PF07690.16	gi|564291176|ref|YP_008877511.1|	-	0.0022	17.0	0.7	0.0031	16.5	0.7	1.2	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Rrp44_S1	PF17215.3	gi|564291176|ref|YP_008877511.1|	-	0.03	14.3	1.0	6.6	6.8	0.0	2.8	3	0	0	3	3	3	0	S1	domain
PHB_acc_N	PF07879.11	gi|564291176|ref|YP_008877511.1|	-	0.97	9.6	4.8	1.4	9.1	0.1	2.9	3	0	0	3	3	3	0	PHB/PHA	accumulation	regulator	DNA-binding	domain
GST_N_3	PF13417.6	gi|564291177|ref|YP_008877512.1|	-	5.7e-13	49.1	0.0	6.9e-13	48.8	0.0	1.0	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Glutaredoxin	PF00462.24	gi|564291177|ref|YP_008877512.1|	-	5e-12	45.9	0.1	7.4e-12	45.3	0.1	1.2	1	0	0	1	1	1	1	Glutaredoxin
GST_N_2	PF13409.6	gi|564291177|ref|YP_008877512.1|	-	2.1e-10	40.7	0.0	2.5e-10	40.5	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
GST_N	PF02798.20	gi|564291177|ref|YP_008877512.1|	-	0.0011	19.2	0.0	0.0013	19.0	0.0	1.1	1	0	0	1	1	1	1	Glutathione	S-transferase,	N-terminal	domain
Tom37	PF10568.9	gi|564291177|ref|YP_008877512.1|	-	0.099	12.9	0.0	0.12	12.7	0.0	1.2	1	0	0	1	1	1	0	Outer	mitochondrial	membrane	transport	complex	protein
DUF836	PF05768.14	gi|564291177|ref|YP_008877512.1|	-	0.12	12.8	0.0	0.17	12.3	0.0	1.3	1	1	0	1	1	1	0	Glutaredoxin-like	domain	(DUF836)
SapB_1	PF05184.15	gi|564291177|ref|YP_008877512.1|	-	0.15	12.2	0.0	0.62	10.1	0.1	2.0	3	0	0	3	3	3	0	Saposin-like	type	B,	region	1
AhpC-TSA	PF00578.21	gi|564291178|ref|YP_008877513.1|	-	1.3e-15	57.4	0.0	1.6e-15	57.1	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|564291178|ref|YP_008877513.1|	-	2.4e-06	27.3	0.0	8.6e-06	25.5	0.0	1.8	1	1	0	1	1	1	1	Redoxin
Sua5_yciO_yrdC	PF01300.18	gi|564291179|ref|YP_008877514.1|	-	1.5e-49	167.9	0.0	1.8e-49	167.7	0.0	1.0	1	0	0	1	1	1	1	Telomere	recombination
Img2	PF05046.14	gi|564291179|ref|YP_008877514.1|	-	0.047	14.0	0.0	0.074	13.3	0.0	1.4	1	0	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
CCG	PF02754.16	gi|564291182|ref|YP_008877517.1|	-	1.6e-17	63.5	0.0	7.6e-12	45.3	0.0	2.4	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4	PF00037.27	gi|564291182|ref|YP_008877517.1|	-	4.2e-10	39.0	11.2	4.5e-05	23.1	1.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.6	gi|564291182|ref|YP_008877517.1|	-	9.7e-10	38.4	10.9	1e-07	32.0	10.7	3.0	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564291182|ref|YP_008877517.1|	-	2.1e-09	37.4	7.4	2.7e-09	37.0	5.3	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|564291182|ref|YP_008877517.1|	-	2.6e-09	37.4	4.4	2.6e-09	37.4	4.4	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564291182|ref|YP_008877517.1|	-	4.2e-08	33.7	8.9	4.2e-08	33.7	8.9	2.1	2	1	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564291182|ref|YP_008877517.1|	-	6.4e-07	29.1	12.2	0.00048	20.0	1.7	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|564291182|ref|YP_008877517.1|	-	3.4e-05	24.7	11.4	0.00029	21.7	10.2	2.6	2	1	1	3	3	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.7	gi|564291182|ref|YP_008877517.1|	-	8.1e-05	22.5	21.5	0.001	19.0	4.1	2.8	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_17	PF13534.6	gi|564291182|ref|YP_008877517.1|	-	0.00013	22.4	9.5	0.00013	22.4	9.5	2.5	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564291182|ref|YP_008877517.1|	-	0.0002	21.4	12.1	0.015	15.4	0.5	2.8	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Nitrate_red_gam	PF02665.14	gi|564291182|ref|YP_008877517.1|	-	0.0004	20.0	0.6	0.00074	19.1	0.6	1.3	1	0	0	1	1	1	1	Nitrate	reductase	gamma	subunit
Fer4_4	PF12800.7	gi|564291182|ref|YP_008877517.1|	-	0.0034	17.8	18.6	0.0063	16.9	1.5	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|564291182|ref|YP_008877517.1|	-	0.0096	16.7	7.8	0.11	13.4	0.5	2.8	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|564291182|ref|YP_008877517.1|	-	0.098	13.4	8.1	0.43	11.4	0.3	3.2	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.7	gi|564291182|ref|YP_008877517.1|	-	0.33	12.0	24.6	0.33	12.0	5.1	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|564291182|ref|YP_008877517.1|	-	0.4	10.9	10.7	2.4	8.4	1.9	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|564291182|ref|YP_008877517.1|	-	3.8	8.1	18.9	2.8	8.6	3.1	3.4	4	0	0	4	4	3	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
BRI3BP	PF14965.6	gi|564291405|ref|YP_008877518.1|	-	0.058	12.9	0.0	0.058	12.9	0.0	1.1	1	0	0	1	1	1	0	Negative	regulator	of	p53/TP53
LapA_dom	PF06305.11	gi|564291405|ref|YP_008877518.1|	-	0.062	13.1	0.0	0.078	12.8	0.0	1.1	1	0	0	1	1	1	0	Lipopolysaccharide	assembly	protein	A	domain
TrkA_N	PF02254.18	gi|564291183|ref|YP_008877519.1|	-	2.5e-27	95.4	3.0	3.5e-27	95.0	3.0	1.2	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|564291183|ref|YP_008877519.1|	-	1.5e-06	28.5	0.4	2.4e-06	27.9	0.4	1.2	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Sacchrp_dh_NADP	PF03435.18	gi|564291183|ref|YP_008877519.1|	-	0.00045	20.5	0.6	0.00078	19.7	0.6	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
3HCDH_N	PF02737.18	gi|564291183|ref|YP_008877519.1|	-	0.0017	18.3	0.8	0.0027	17.6	0.8	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AlaDh_PNT_C	PF01262.21	gi|564291183|ref|YP_008877519.1|	-	0.008	15.5	1.7	0.014	14.7	1.4	1.4	1	1	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
IlvN	PF07991.12	gi|564291183|ref|YP_008877519.1|	-	0.047	13.3	0.2	0.078	12.5	0.2	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_2	PF03446.15	gi|564291183|ref|YP_008877519.1|	-	0.052	13.7	0.2	0.078	13.1	0.2	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|564291183|ref|YP_008877519.1|	-	0.059	12.7	0.1	0.086	12.2	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|564291183|ref|YP_008877519.1|	-	0.082	13.0	1.6	0.2	11.7	0.6	1.9	1	1	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
MoCF_biosynth	PF00994.24	gi|564291185|ref|YP_008877521.1|	-	3.5e-31	107.8	0.7	1.3e-30	106.0	0.2	1.8	2	0	0	2	2	2	1	Probable	molybdopterin	binding	domain
DUF218	PF02698.17	gi|564291185|ref|YP_008877521.1|	-	0.0057	16.7	0.0	0.011	15.7	0.0	1.5	1	0	0	1	1	1	1	DUF218	domain
ALAD	PF00490.21	gi|564291186|ref|YP_008877522.1|	-	1e-140	468.5	0.0	1.1e-140	468.3	0.0	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
DUF4129	PF13559.6	gi|564291187|ref|YP_008877523.1|	-	5.1e-06	26.7	6.6	5.1e-06	26.7	6.6	2.5	1	1	2	3	3	3	1	Domain	of	unknown	function	(DUF4129)
DUF58	PF01882.18	gi|564291188|ref|YP_008877525.1|	-	6.3e-18	64.8	0.6	1.5e-17	63.6	0.6	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
DUF11	PF01345.18	gi|564291188|ref|YP_008877525.1|	-	1.9e-09	37.7	0.6	1.9e-09	37.7	0.6	3.2	3	1	0	3	3	3	1	Domain	of	unknown	function	DUF11
NPCBM_assoc	PF10633.9	gi|564291188|ref|YP_008877525.1|	-	0.00035	20.8	4.0	0.00062	20.0	0.2	2.9	3	0	0	3	3	3	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
Glyco_transf_4	PF13439.6	gi|564291188|ref|YP_008877525.1|	-	0.00069	19.7	0.9	0.46	10.5	0.2	2.6	2	0	0	2	2	2	2	Glycosyltransferase	Family	4
CARDB	PF07705.11	gi|564291188|ref|YP_008877525.1|	-	0.0023	18.2	0.1	0.0063	16.8	0.0	1.7	2	0	0	2	2	2	1	CARDB
TRAP_beta	PF05753.14	gi|564291188|ref|YP_008877525.1|	-	0.13	11.6	0.0	0.33	10.3	0.0	1.7	2	0	0	2	2	2	0	Translocon-associated	protein	beta	(TRAPB)
DUF3917	PF13055.6	gi|564291189|ref|YP_008877526.1|	-	0.85	10.1	6.0	1.5	9.3	5.0	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3917)
PAS_4	PF08448.10	gi|564291190|ref|YP_008877527.1|	-	2.7e-14	53.3	0.7	6.4e-06	26.4	0.1	2.7	2	0	0	2	2	2	2	PAS	fold
HATPase_c	PF02518.26	gi|564291190|ref|YP_008877527.1|	-	3.4e-13	50.1	0.0	6.2e-13	49.2	0.0	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS	PF00989.25	gi|564291190|ref|YP_008877527.1|	-	1.9e-12	47.2	0.0	5.4e-06	26.4	0.0	2.8	3	0	0	3	3	3	2	PAS	fold
PAS_3	PF08447.12	gi|564291190|ref|YP_008877527.1|	-	7.3e-10	39.0	0.0	0.00035	20.8	0.0	2.4	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|564291190|ref|YP_008877527.1|	-	8.7e-10	38.8	0.0	0.00027	21.2	0.0	2.4	2	0	0	2	2	2	2	PAS	domain
PAS_8	PF13188.7	gi|564291190|ref|YP_008877527.1|	-	5.9e-08	32.6	0.2	6e-05	23.0	0.1	2.7	2	0	0	2	2	2	2	PAS	domain
HATPase_c_2	PF13581.6	gi|564291190|ref|YP_008877527.1|	-	8.3e-05	22.5	0.2	0.00028	20.9	0.1	2.0	1	1	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HisKA	PF00512.25	gi|564291190|ref|YP_008877527.1|	-	0.051	13.6	2.2	0.069	13.2	1.1	1.8	2	0	0	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
HisKA_4TM	PF16926.5	gi|564291190|ref|YP_008877527.1|	-	0.21	11.1	0.1	0.21	11.1	0.1	2.0	3	0	0	3	3	3	0	Archaeal	4TM	region	of	histidine	kinase
MCPsignal	PF00015.21	gi|564291191|ref|YP_008877528.1|	-	1.9e-34	119.0	47.9	1.5e-33	116.1	27.1	4.1	1	1	2	3	3	3	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF1664	PF07889.12	gi|564291191|ref|YP_008877528.1|	-	0.00053	20.0	16.9	0.075	13.1	0.6	4.5	2	1	3	5	5	4	2	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|564291191|ref|YP_008877528.1|	-	0.0019	18.5	13.1	2.1	8.7	0.0	5.0	3	2	0	5	5	5	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DASH_Dad2	PF08654.10	gi|564291191|ref|YP_008877528.1|	-	0.0056	17.1	16.2	1.2	9.6	2.2	3.9	2	1	2	4	4	3	1	DASH	complex	subunit	Dad2
DUF948	PF06103.11	gi|564291191|ref|YP_008877528.1|	-	0.0078	16.4	22.6	0.041	14.1	4.2	4.2	2	2	2	4	4	4	3	Bacterial	protein	of	unknown	function	(DUF948)
Fib_alpha	PF08702.10	gi|564291191|ref|YP_008877528.1|	-	0.013	15.7	4.6	4.2	7.6	0.3	3.3	1	1	1	3	3	3	0	Fibrinogen	alpha/beta	chain	family
EcoEI_R_C	PF08463.10	gi|564291191|ref|YP_008877528.1|	-	0.017	15.3	0.1	0.063	13.4	0.1	1.9	2	0	0	2	2	1	0	EcoEI	R	protein	C-terminal
HMMR_N	PF15905.5	gi|564291191|ref|YP_008877528.1|	-	0.02	14.4	7.4	0.18	11.3	1.3	2.4	1	1	0	2	2	2	0	Hyaluronan	mediated	motility	receptor	N-terminal
RmuC	PF02646.16	gi|564291191|ref|YP_008877528.1|	-	0.034	13.3	9.5	0.6	9.2	0.8	3.4	2	2	2	4	4	4	0	RmuC	family
NPV_P10	PF05531.12	gi|564291191|ref|YP_008877528.1|	-	0.076	13.5	19.6	0.76	10.3	1.0	4.8	2	2	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
IFT57	PF10498.9	gi|564291191|ref|YP_008877528.1|	-	0.12	11.3	6.5	0.62	9.0	0.5	2.5	1	1	1	3	3	3	0	Intra-flagellar	transport	protein	57
AAA_13	PF13166.6	gi|564291191|ref|YP_008877528.1|	-	0.15	10.7	11.5	0.22	10.1	11.5	1.3	1	0	0	1	1	1	0	AAA	domain
PAXNEB	PF05625.11	gi|564291191|ref|YP_008877528.1|	-	0.18	10.9	0.1	0.33	10.0	0.1	1.3	1	0	0	1	1	1	0	PAXNEB	protein
RE_LlaMI	PF09562.10	gi|564291191|ref|YP_008877528.1|	-	0.22	11.1	0.0	0.34	10.4	0.0	1.2	1	0	0	1	1	1	0	LlaMI	restriction	endonuclease
Spc7	PF08317.11	gi|564291191|ref|YP_008877528.1|	-	0.27	10.1	17.6	1.6	7.5	3.8	2.4	1	1	0	2	2	2	0	Spc7	kinetochore	protein
Laminin_II	PF06009.12	gi|564291191|ref|YP_008877528.1|	-	0.34	10.9	27.8	0.64	10.0	0.4	4.3	2	2	1	3	3	3	0	Laminin	Domain	II
Sec34	PF04136.15	gi|564291191|ref|YP_008877528.1|	-	0.4	10.6	6.5	4.6	7.1	0.1	3.4	2	2	2	4	4	4	0	Sec34-like	family
TMPIT	PF07851.13	gi|564291191|ref|YP_008877528.1|	-	0.4	9.9	2.4	4.2	6.5	0.1	2.4	1	1	0	2	2	2	0	TMPIT-like	protein
APG17	PF04108.12	gi|564291191|ref|YP_008877528.1|	-	0.47	9.5	17.7	1.2	8.1	5.4	2.3	1	1	1	2	2	2	0	Autophagy	protein	Apg17
Nup54	PF13874.6	gi|564291191|ref|YP_008877528.1|	-	0.67	10.1	10.6	2.9	8.0	2.4	3.2	1	1	2	3	3	3	0	Nucleoporin	complex	subunit	54
MscS_porin	PF12795.7	gi|564291191|ref|YP_008877528.1|	-	0.95	9.0	29.5	2.3	7.7	10.5	2.6	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
Seryl_tRNA_N	PF02403.22	gi|564291191|ref|YP_008877528.1|	-	1.1	9.6	17.4	7.1	6.9	1.0	4.4	1	1	3	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF489	PF04356.12	gi|564291191|ref|YP_008877528.1|	-	1.6	8.7	5.3	0.57	10.2	0.5	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF489)
DUF3584	PF12128.8	gi|564291191|ref|YP_008877528.1|	-	2.1	5.7	23.5	0.019	12.5	9.2	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF16	PF01519.16	gi|564291191|ref|YP_008877528.1|	-	2.3	8.8	7.5	18	5.9	0.5	3.7	2	2	1	3	3	3	0	Protein	of	unknown	function	DUF16
Baculo_PEP_C	PF04513.12	gi|564291191|ref|YP_008877528.1|	-	2.4	8.2	21.0	0.5	10.4	4.5	3.6	2	2	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
YkyA	PF10368.9	gi|564291191|ref|YP_008877528.1|	-	2.8	7.6	15.5	3.7	7.2	0.8	3.5	2	1	1	4	4	3	0	Putative	cell-wall	binding	lipoprotein
Jnk-SapK_ap_N	PF09744.9	gi|564291191|ref|YP_008877528.1|	-	4	7.6	12.9	5.7	7.1	1.0	3.3	1	1	0	3	3	3	0	JNK_SAPK-associated	protein-1
CorA	PF01544.18	gi|564291191|ref|YP_008877528.1|	-	4.1	6.6	11.9	4.8	6.4	2.6	2.5	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
COG2	PF06148.11	gi|564291191|ref|YP_008877528.1|	-	4.3	7.4	12.0	15	5.7	0.8	3.7	2	2	2	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Cep57_MT_bd	PF06657.13	gi|564291191|ref|YP_008877528.1|	-	5.2	7.6	5.5	14	6.3	0.2	3.7	4	1	1	5	5	3	0	Centrosome	microtubule-binding	domain	of	Cep57
ZapB	PF06005.12	gi|564291191|ref|YP_008877528.1|	-	6.5	7.3	5.9	89	3.6	0.3	3.5	2	1	1	3	3	3	0	Cell	division	protein	ZapB
Not3	PF04065.15	gi|564291191|ref|YP_008877528.1|	-	7.2	6.0	9.1	6.9	6.0	1.6	2.3	1	1	0	2	2	2	0	Not1	N-terminal	domain,	CCR4-Not	complex	component
TBCC_N	PF16752.5	gi|564291191|ref|YP_008877528.1|	-	7.2	7.1	19.3	0.59	10.6	1.1	4.2	1	1	2	4	4	4	0	Tubulin-specific	chaperone	C	N-terminal	domain
DUF3450	PF11932.8	gi|564291191|ref|YP_008877528.1|	-	7.8	5.7	27.6	1.2	8.3	1.4	3.7	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF3450)
Fzo_mitofusin	PF04799.13	gi|564291191|ref|YP_008877528.1|	-	7.8	6.0	7.5	34	4.0	0.2	3.6	2	2	2	4	4	4	0	fzo-like	conserved	region
Mod_r	PF07200.13	gi|564291191|ref|YP_008877528.1|	-	7.9	6.6	8.5	16	5.6	0.7	3.0	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
Lipoprotein_7	PF01540.16	gi|564291191|ref|YP_008877528.1|	-	9.2	5.4	14.2	1.2	8.3	3.9	2.8	1	1	2	3	3	3	0	Adhesin	lipoprotein
SCO1-SenC	PF02630.14	gi|564291191|ref|YP_008877528.1|	-	9.6	6.1	7.3	2.2	8.2	1.1	2.7	2	1	1	3	3	3	0	SCO1/SenC
Ammonium_transp	PF00909.21	gi|564291192|ref|YP_008877529.1|	-	7.8e-96	321.2	43.7	9e-96	321.0	43.7	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
PsbY	PF06298.11	gi|564291192|ref|YP_008877529.1|	-	0.021	14.7	0.3	0.021	14.7	0.3	2.8	3	0	0	3	3	3	0	Photosystem	II	protein	Y	(PsbY)
P-II	PF00543.22	gi|564291193|ref|YP_008877530.1|	-	8.9e-33	112.9	0.2	1e-32	112.7	0.2	1.0	1	0	0	1	1	1	1	Nitrogen	regulatory	protein	P-II
HisG_C	PF08029.11	gi|564291193|ref|YP_008877530.1|	-	0.096	12.8	0.8	0.33	11.2	0.0	2.0	2	0	0	2	2	2	0	HisG,	C-terminal	domain
HTH_24	PF13412.6	gi|564291194|ref|YP_008877531.1|	-	4.7e-13	48.5	0.0	1.1e-12	47.3	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564291194|ref|YP_008877531.1|	-	6.4e-12	45.1	2.0	1.1e-11	44.4	2.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.21	gi|564291194|ref|YP_008877531.1|	-	3.8e-11	42.8	0.2	6.9e-11	42.0	0.2	1.4	1	0	0	1	1	1	1	Lrp/AsnC	ligand	binding	domain
MarR_2	PF12802.7	gi|564291194|ref|YP_008877531.1|	-	1.8e-05	24.5	1.2	3.1e-05	23.8	1.2	1.5	1	1	0	1	1	1	1	MarR	family
HTH_Tnp_ISL3	PF13542.6	gi|564291194|ref|YP_008877531.1|	-	0.00038	19.8	0.3	0.00067	19.0	0.3	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_27	PF13463.6	gi|564291194|ref|YP_008877531.1|	-	0.00046	20.6	0.2	0.0094	16.4	0.1	2.4	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.19	gi|564291194|ref|YP_008877531.1|	-	0.00052	19.9	0.0	0.00091	19.1	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_50	PF18024.1	gi|564291194|ref|YP_008877531.1|	-	0.0018	17.8	0.0	0.0035	16.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564291194|ref|YP_008877531.1|	-	0.002	17.9	0.0	0.0036	17.1	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_28	PF13518.6	gi|564291194|ref|YP_008877531.1|	-	0.0021	18.1	0.0	0.0034	17.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.6	gi|564291194|ref|YP_008877531.1|	-	0.004	17.1	0.0	0.0088	16.0	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.7	gi|564291194|ref|YP_008877531.1|	-	0.0061	16.6	0.1	0.011	15.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564291194|ref|YP_008877531.1|	-	0.0096	15.8	0.0	0.015	15.1	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|564291194|ref|YP_008877531.1|	-	0.023	14.5	0.0	0.043	13.6	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_38	PF13936.6	gi|564291194|ref|YP_008877531.1|	-	0.027	14.2	0.0	0.066	13.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Trp_repressor	PF01371.19	gi|564291194|ref|YP_008877531.1|	-	0.037	14.2	0.1	0.096	12.8	0.0	1.6	2	0	0	2	2	2	0	Trp	repressor	protein
Crp	PF00325.20	gi|564291194|ref|YP_008877531.1|	-	0.076	12.7	0.1	0.14	11.8	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
HTH_11	PF08279.12	gi|564291194|ref|YP_008877531.1|	-	0.086	12.8	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
LacI	PF00356.21	gi|564291194|ref|YP_008877531.1|	-	0.099	12.5	0.4	0.27	11.0	0.4	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
Peripla_BP_6	PF13458.6	gi|564291195|ref|YP_008877532.1|	-	5.1e-53	180.9	7.0	6.4e-53	180.6	7.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564291195|ref|YP_008877532.1|	-	7.6e-21	74.5	1.0	1.8e-20	73.3	1.0	1.5	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.28	gi|564291195|ref|YP_008877532.1|	-	0.003	16.7	0.0	0.0056	15.8	0.0	1.4	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
ParBc	PF02195.18	gi|564291195|ref|YP_008877532.1|	-	0.16	12.3	0.0	0.36	11.1	0.0	1.5	1	0	0	1	1	1	0	ParB-like	nuclease	domain
CheC	PF04509.12	gi|564291196|ref|YP_008877533.1|	-	4.5e-12	45.7	0.6	8.1e-12	44.9	0.6	1.5	1	0	0	1	1	1	1	CheC-like	family
CheX	PF13690.6	gi|564291196|ref|YP_008877533.1|	-	0.00059	20.0	0.2	0.00089	19.4	0.2	1.3	1	0	0	1	1	1	1	Chemotaxis	phosphatase	CheX
FliM	PF02154.15	gi|564291196|ref|YP_008877533.1|	-	0.13	12.1	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	Flagellar	motor	switch	protein	FliM
Peripla_BP_6	PF13458.6	gi|564291197|ref|YP_008877534.1|	-	2.4e-62	211.6	4.9	3.2e-62	211.2	4.9	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564291197|ref|YP_008877534.1|	-	1.3e-19	70.4	2.3	9.5e-19	67.6	2.3	2.0	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.28	gi|564291197|ref|YP_008877534.1|	-	6e-07	28.9	0.1	7.9e-07	28.5	0.1	1.2	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
RNA_pol_Rpb2_45	PF10385.9	gi|564291197|ref|YP_008877534.1|	-	0.091	13.0	0.1	0.25	11.6	0.1	1.8	1	0	0	1	1	1	0	RNA	polymerase	beta	subunit	external	1	domain
NIR_SIR	PF01077.22	gi|564291198|ref|YP_008877536.1|	-	9.2e-46	155.2	0.1	1.4e-30	105.9	0.0	2.4	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.17	gi|564291198|ref|YP_008877536.1|	-	7.7e-37	125.0	0.0	8.6e-17	60.8	0.0	3.3	2	1	0	2	2	2	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DGC	PF08859.11	gi|564291198|ref|YP_008877536.1|	-	0.00068	19.7	0.1	0.015	15.4	0.0	2.4	2	0	0	2	2	2	1	DGC	domain
MFS_1	PF07690.16	gi|564291199|ref|YP_008877537.1|	-	1.9e-30	106.0	45.2	1.9e-30	106.0	45.2	1.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564291199|ref|YP_008877537.1|	-	0.00022	20.2	11.3	0.071	12.0	11.3	3.3	1	1	0	1	1	1	1	MFS_1	like	family
Molybdopterin	PF00384.22	gi|564291200|ref|YP_008877538.1|	-	3.9e-57	194.1	0.0	5e-57	193.8	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564291200|ref|YP_008877538.1|	-	3.9e-19	68.7	0.0	9e-19	67.5	0.0	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|564291200|ref|YP_008877538.1|	-	1.4e-08	34.5	0.5	3.6e-08	33.3	0.5	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Aminotran_3	PF00202.21	gi|564291201|ref|YP_008877539.1|	-	6.7e-69	232.5	0.0	8.8e-69	232.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.21	gi|564291201|ref|YP_008877539.1|	-	0.002	17.4	0.0	0.0024	17.1	0.0	1.3	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Neuregulin	PF02158.15	gi|564291201|ref|YP_008877539.1|	-	0.11	11.8	0.0	0.17	11.2	0.0	1.1	1	0	0	1	1	1	0	Neuregulin	intracellular	region
Pribosyltran_N	PF13793.6	gi|564291203|ref|YP_008877541.1|	-	7.9e-24	83.8	0.0	1.1e-22	80.2	0.0	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.27	gi|564291203|ref|YP_008877541.1|	-	4e-12	45.9	0.1	1.3e-11	44.3	0.1	1.7	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.6	gi|564291203|ref|YP_008877541.1|	-	3.9e-07	30.3	0.9	1.4e-06	28.5	0.3	1.9	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
UPRTase	PF14681.6	gi|564291203|ref|YP_008877541.1|	-	0.00031	20.3	0.1	0.00062	19.3	0.1	1.5	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.6	gi|564291203|ref|YP_008877541.1|	-	0.0029	17.1	0.8	0.088	12.3	0.1	2.4	2	1	1	3	3	3	1	Phosphoribosyl	transferase
FIST_C	PF10442.9	gi|564291203|ref|YP_008877541.1|	-	0.008	16.2	0.0	0.093	12.7	0.0	2.2	2	0	0	2	2	2	1	FIST	C	domain
RIO1	PF01163.22	gi|564291203|ref|YP_008877541.1|	-	0.16	11.5	0.0	0.43	10.1	0.0	1.6	2	0	0	2	2	2	0	RIO1	family
tRNA-synt_1	PF00133.22	gi|564291204|ref|YP_008877542.1|	-	7.7e-172	572.7	3.0	1.1e-171	572.1	3.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.13	gi|564291204|ref|YP_008877542.1|	-	1e-29	103.5	0.0	2e-29	102.6	0.0	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.11	gi|564291204|ref|YP_008877542.1|	-	2e-26	92.7	0.8	2.7e-10	39.6	0.0	3.8	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.19	gi|564291204|ref|YP_008877542.1|	-	0.00043	19.7	0.0	0.14	11.5	0.0	2.7	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.6	gi|564291204|ref|YP_008877542.1|	-	0.014	14.9	0.0	0.057	12.9	0.0	1.8	1	1	0	1	1	1	0	Leucyl-tRNA	synthetase,	Domain	2
PSII_Pbs27	PF13326.6	gi|564291204|ref|YP_008877542.1|	-	0.1	12.9	0.3	7.6	6.8	0.0	2.5	2	0	0	2	2	2	0	Photosystem	II	Pbs27
AF0941-like	PF14591.6	gi|564291204|ref|YP_008877542.1|	-	1	9.9	4.4	0.92	10.1	0.2	2.8	2	0	0	2	2	2	0	AF0941-like
DUF4177	PF13783.6	gi|564291205|ref|YP_008877543.1|	-	4e-05	23.8	0.0	4.6e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
UDG	PF03167.19	gi|564291206|ref|YP_008877544.1|	-	4e-36	124.3	0.0	5.3e-36	123.9	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
HIT	PF01230.23	gi|564291207|ref|YP_008877545.1|	-	1.5e-26	93.0	0.0	5.1e-26	91.3	0.0	1.7	2	0	0	2	2	2	1	HIT	domain
DcpS_C	PF11969.8	gi|564291207|ref|YP_008877545.1|	-	1.8e-13	51.0	0.0	2.2e-13	50.7	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.15	gi|564291207|ref|YP_008877545.1|	-	0.0012	18.7	0.0	0.0017	18.2	0.0	1.3	1	0	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
AAA_31	PF13614.6	gi|564291208|ref|YP_008877546.1|	-	4.8e-09	36.4	0.0	6.4e-09	36.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CBP_BcsQ	PF06564.12	gi|564291208|ref|YP_008877546.1|	-	1.8e-07	30.9	0.7	9.6e-07	28.5	0.7	1.9	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
CbiA	PF01656.23	gi|564291208|ref|YP_008877546.1|	-	4.1e-05	23.6	0.0	7.4e-05	22.8	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.11	gi|564291208|ref|YP_008877546.1|	-	6.2e-05	22.4	0.8	0.037	13.3	0.2	2.1	2	0	0	2	2	2	2	ATPase	MipZ
ParA	PF10609.9	gi|564291208|ref|YP_008877546.1|	-	0.0023	17.5	0.1	0.17	11.3	0.4	2.1	2	0	0	2	2	2	2	NUBPL	iron-transfer	P-loop	NTPase
Usp	PF00582.26	gi|564291209|ref|YP_008877547.1|	-	4.7e-06	27.2	1.1	2.8e-05	24.6	1.2	1.8	1	1	0	1	1	1	1	Universal	stress	protein	family
RNase_H_2	PF13482.6	gi|564291210|ref|YP_008877548.1|	-	1.7e-34	119.2	0.0	2.3e-34	118.8	0.0	1.2	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_A_exo1	PF01612.20	gi|564291210|ref|YP_008877548.1|	-	0.0025	17.5	0.1	0.0051	16.5	0.1	1.5	1	1	0	1	1	1	1	3'-5'	exonuclease
DNA_pol_B_exo2	PF10108.9	gi|564291210|ref|YP_008877548.1|	-	0.059	13.0	0.1	0.52	10.0	0.0	2.2	1	1	1	2	2	2	0	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_T	PF00929.24	gi|564291210|ref|YP_008877548.1|	-	0.081	13.5	0.4	17	5.9	0.0	2.3	1	1	1	2	2	2	0	Exonuclease
DUF1404	PF07185.11	gi|564291211|ref|YP_008877549.1|	-	0.19	11.5	2.0	0.22	11.2	2.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1404)
Zn-ribbon_8	PF09723.10	gi|564291212|ref|YP_008877550.1|	-	0.029	14.5	1.4	3.1	8.0	0.1	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-WRNIP1_ubi	PF18279.1	gi|564291212|ref|YP_008877550.1|	-	0.059	14.0	1.3	0.2	12.4	0.1	2.0	2	0	0	2	2	2	0	Werner	helicase-interacting	protein	1	ubiquitin-binding	domain
Rubredoxin_2	PF18073.1	gi|564291212|ref|YP_008877550.1|	-	0.13	12.0	1.3	1.7	8.5	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin	metal	binding	domain
UPF0547	PF10571.9	gi|564291212|ref|YP_008877550.1|	-	0.15	12.2	5.1	0.78	9.9	0.5	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF35_N	PF12172.8	gi|564291212|ref|YP_008877550.1|	-	0.18	11.7	4.2	2.8	7.9	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Auto_anti-p27	PF06677.12	gi|564291212|ref|YP_008877550.1|	-	0.31	11.2	2.6	4	7.7	0.2	2.1	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Zn_Tnp_IS1595	PF12760.7	gi|564291212|ref|YP_008877550.1|	-	0.87	9.6	3.8	8.9	6.4	0.2	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Rhomboid	PF01694.22	gi|564291213|ref|YP_008877551.1|	-	1.4e-22	80.3	13.7	2.3e-22	79.6	13.7	1.2	1	0	0	1	1	1	1	Rhomboid	family
DUF1751	PF08551.10	gi|564291213|ref|YP_008877551.1|	-	2.1e-05	25.0	0.5	5.4e-05	23.7	0.0	1.9	2	0	0	2	2	2	1	Eukaryotic	integral	membrane	protein	(DUF1751)
DUF2164	PF09932.9	gi|564291408|ref|YP_008877552.1|	-	0.062	13.4	0.5	0.32	11.1	0.3	2.1	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2164)
DUF123	PF01986.16	gi|564291214|ref|YP_008877553.1|	-	1.4e-30	105.7	0.0	1.9e-30	105.2	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
tRNA-synt_1	PF00133.22	gi|564291215|ref|YP_008877554.1|	-	1.4e-62	211.9	0.0	8.1e-40	136.7	0.1	5.0	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1_2	PF13603.6	gi|564291215|ref|YP_008877554.1|	-	4.7e-55	186.0	0.0	7.4e-55	185.3	0.0	1.3	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1g	PF09334.11	gi|564291215|ref|YP_008877554.1|	-	6.1e-32	110.8	0.0	1.6e-24	86.4	0.0	3.4	3	0	0	3	3	3	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.13	gi|564291215|ref|YP_008877554.1|	-	2.2e-12	47.2	0.0	5.2e-12	46.0	0.0	1.6	1	1	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1f	PF01921.18	gi|564291215|ref|YP_008877554.1|	-	0.0011	18.0	0.0	0.081	11.8	0.0	2.6	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(K)
zf-ribbon_3	PF13248.6	gi|564291215|ref|YP_008877554.1|	-	0.0037	16.6	7.2	4.6	6.8	0.1	4.2	4	0	0	4	4	4	2	zinc-ribbon	domain
tRNA-synt_1e	PF01406.19	gi|564291215|ref|YP_008877554.1|	-	0.0041	16.5	0.0	1.9	7.8	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
DNA_ligase_ZBD	PF03119.16	gi|564291215|ref|YP_008877554.1|	-	0.0098	15.9	1.8	0.27	11.3	0.0	2.7	2	0	0	2	2	2	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DZR	PF12773.7	gi|564291215|ref|YP_008877554.1|	-	0.02	14.9	2.3	2	8.5	0.1	2.6	2	1	0	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|564291215|ref|YP_008877554.1|	-	0.037	13.6	8.8	1.7	8.3	0.1	4.2	4	0	0	4	4	4	0	TFIIB	zinc-binding
Zn-ribbon_8	PF09723.10	gi|564291215|ref|YP_008877554.1|	-	0.4	10.8	7.2	0.39	10.9	0.1	3.5	4	0	0	4	4	4	0	Zinc	ribbon	domain
BPD_transp_2	PF02653.16	gi|564291216|ref|YP_008877555.1|	-	5.3e-35	120.9	33.7	5.3e-35	120.9	33.7	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|564291217|ref|YP_008877556.1|	-	4.5e-45	153.9	32.9	4.5e-45	153.9	32.9	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|564291218|ref|YP_008877557.1|	-	4.8e-49	166.4	0.0	1e-28	100.5	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|564291218|ref|YP_008877557.1|	-	1e-09	38.6	0.0	0.00024	21.0	0.0	2.3	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564291218|ref|YP_008877557.1|	-	2.4e-05	24.0	0.5	0.027	14.2	0.0	2.7	3	0	0	3	3	3	2	P-loop	containing	region	of	AAA	domain
Bac_DnaA	PF00308.18	gi|564291218|ref|YP_008877557.1|	-	4.5e-05	23.4	1.0	0.00089	19.2	0.0	2.7	3	0	0	3	3	3	1	Bacterial	dnaA	protein
AAA_15	PF13175.6	gi|564291218|ref|YP_008877557.1|	-	0.00023	21.0	0.0	0.44	10.2	0.0	2.1	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564291218|ref|YP_008877557.1|	-	0.00024	20.9	0.3	0.031	14.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.19	gi|564291218|ref|YP_008877557.1|	-	0.0012	18.4	0.1	3.3	7.1	0.0	3.1	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|564291218|ref|YP_008877557.1|	-	0.0023	18.5	0.0	0.0038	17.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564291218|ref|YP_008877557.1|	-	0.0038	17.1	0.1	0.04	13.8	0.0	2.4	3	0	0	3	3	3	1	RsgA	GTPase
MMR_HSR1	PF01926.23	gi|564291218|ref|YP_008877557.1|	-	0.016	15.3	0.0	0.2	11.7	0.0	2.5	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.6	gi|564291218|ref|YP_008877557.1|	-	0.04	14.2	1.8	1.1	9.5	0.4	3.0	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|564291218|ref|YP_008877557.1|	-	0.045	13.5	0.5	1.3	8.8	0.0	2.8	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
AAA_27	PF13514.6	gi|564291218|ref|YP_008877557.1|	-	0.067	12.8	0.0	0.15	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Bmp	PF02608.14	gi|564291219|ref|YP_008877558.1|	-	4.9e-56	189.9	8.6	8.3e-56	189.2	8.6	1.3	1	1	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
PHO4	PF01384.20	gi|564291220|ref|YP_008877559.1|	-	3e-41	141.6	31.5	4.1e-41	141.1	31.5	1.2	1	0	0	1	1	1	1	Phosphate	transporter	family
L6_membrane	PF05805.12	gi|564291220|ref|YP_008877559.1|	-	0.091	12.3	4.6	0.11	12.0	0.5	2.6	2	0	0	2	2	2	0	L6	membrane	protein
Usp	PF00582.26	gi|564291221|ref|YP_008877560.1|	-	1.2e-27	97.1	2.6	1.4e-27	96.9	2.6	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
baeRF_family10	PF18854.1	gi|564291221|ref|YP_008877560.1|	-	0.004	17.4	1.7	0.0065	16.7	1.7	1.3	1	1	0	1	1	1	1	Bacterial	archaeo-eukaryotic	release	factor	family	10
MRFAP1	PF15155.6	gi|564291221|ref|YP_008877560.1|	-	0.009	16.5	0.3	0.015	15.8	0.3	1.4	1	0	0	1	1	1	1	MORF4	family-associated	protein1
IMP_cyclohyd	PF07826.11	gi|564291222|ref|YP_008877561.1|	-	6.9e-65	218.2	0.0	8e-65	218.0	0.0	1.0	1	0	0	1	1	1	1	IMP	cyclohydrolase-like	protein
Metallophos_2	PF12850.7	gi|564291223|ref|YP_008877562.1|	-	1.3e-25	90.5	0.9	1.6e-25	90.2	0.9	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564291223|ref|YP_008877562.1|	-	3.3e-09	37.5	3.2	7.3e-09	36.4	3.2	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.6	gi|564291223|ref|YP_008877562.1|	-	0.057	12.7	0.1	0.12	11.7	0.1	1.5	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
Fer2	PF00111.27	gi|564291224|ref|YP_008877563.1|	-	1.7e-12	47.1	0.0	3.4e-12	46.1	0.0	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DnaJ	PF00226.31	gi|564291224|ref|YP_008877563.1|	-	8e-11	41.9	0.0	1.3e-10	41.2	0.0	1.4	1	0	0	1	1	1	1	DnaJ	domain
RPT	PF13446.6	gi|564291224|ref|YP_008877563.1|	-	0.019	14.9	0.0	0.078	12.9	0.0	1.9	2	0	0	2	2	2	0	A	repeated	domain	in	UCH-protein
AA_kinase	PF00696.28	gi|564291225|ref|YP_008877564.1|	-	4.1e-46	157.5	2.6	6.3e-46	156.9	2.6	1.3	1	0	0	1	1	1	1	Amino	acid	kinase	family
ACT_7	PF13840.6	gi|564291225|ref|YP_008877564.1|	-	4.9e-17	61.5	0.1	8.6e-08	31.9	0.1	2.8	3	0	0	3	3	3	2	ACT	domain
ACT	PF01842.25	gi|564291225|ref|YP_008877564.1|	-	9.3e-06	25.3	0.1	5.5e-05	22.9	0.1	2.4	2	0	0	2	2	2	1	ACT	domain
DUF2007	PF09413.10	gi|564291225|ref|YP_008877564.1|	-	3.6e-05	23.8	0.4	3.4	7.9	0.0	3.8	3	0	0	3	3	3	3	Putative	prokaryotic	signal	transducing	protein
Acetyltransf_10	PF13673.7	gi|564291226|ref|YP_008877565.1|	-	0.11	12.5	0.0	0.24	11.3	0.0	1.6	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Phenol_hyd_sub	PF06099.11	gi|564291226|ref|YP_008877565.1|	-	0.16	12.0	0.4	10	6.2	0.1	2.3	2	0	0	2	2	2	0	Phenol	hydroxylase	subunit
YndJ	PF14158.6	gi|564291227|ref|YP_008877566.1|	-	1.6e-72	243.9	33.9	1.6e-72	243.9	33.9	1.8	1	1	1	2	2	2	2	YndJ-like	protein
DUF4166	PF13761.6	gi|564291228|ref|YP_008877567.1|	-	5.6e-45	153.3	0.1	6.4e-45	153.1	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4166)
PALP	PF00291.25	gi|564291229|ref|YP_008877568.1|	-	1.3e-70	238.2	3.1	1.7e-70	237.8	3.1	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
RNA_pol_Rpb2_4	PF04566.13	gi|564291229|ref|YP_008877568.1|	-	0.14	12.5	0.0	1.7	9.0	0.0	2.5	2	0	0	2	2	2	0	RNA	polymerase	Rpb2,	domain	4
TrmB	PF01978.19	gi|564291230|ref|YP_008877569.1|	-	2.1e-14	53.1	0.0	2.7e-14	52.8	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564291230|ref|YP_008877569.1|	-	1.6e-06	27.9	0.3	2.7e-06	27.1	0.3	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564291230|ref|YP_008877569.1|	-	2e-05	24.5	0.1	3e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564291230|ref|YP_008877569.1|	-	2.3e-05	23.8	0.1	4.5e-05	22.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564291230|ref|YP_008877569.1|	-	7.9e-05	22.4	1.9	0.00014	21.6	0.4	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564291230|ref|YP_008877569.1|	-	0.00012	21.9	0.0	0.0002	21.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
GntR	PF00392.21	gi|564291230|ref|YP_008877569.1|	-	0.00013	21.6	0.3	0.00025	20.6	0.3	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
MarR	PF01047.22	gi|564291230|ref|YP_008877569.1|	-	0.00014	21.7	0.1	0.00022	21.1	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564291230|ref|YP_008877569.1|	-	0.00089	19.3	0.4	0.0045	17.0	0.4	2.0	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|564291230|ref|YP_008877569.1|	-	0.0012	18.7	0.3	0.0021	18.0	0.3	1.3	1	0	0	1	1	1	1	HTH	domain
TFIIE_alpha	PF02002.17	gi|564291230|ref|YP_008877569.1|	-	0.0033	17.3	0.0	0.0039	17.0	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
DUF746	PF05344.11	gi|564291230|ref|YP_008877569.1|	-	0.016	15.0	0.0	7.3	6.5	0.0	2.3	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF746)
HTH_27	PF13463.6	gi|564291230|ref|YP_008877569.1|	-	0.027	15.0	0.1	0.06	13.9	0.1	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_29	PF13551.6	gi|564291230|ref|YP_008877569.1|	-	0.046	13.7	0.0	0.072	13.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_36	PF13730.6	gi|564291230|ref|YP_008877569.1|	-	0.1	12.6	0.0	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|564291230|ref|YP_008877569.1|	-	0.1	12.9	0.0	0.14	12.5	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
Pribosyltran	PF00156.27	gi|564291231|ref|YP_008877570.1|	-	1.2e-06	28.2	0.0	2.5e-06	27.1	0.0	1.5	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
DUF4224	PF13986.6	gi|564291231|ref|YP_008877570.1|	-	0.14	12.1	0.0	0.42	10.6	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4224)
OTCace_N	PF02729.21	gi|564291232|ref|YP_008877571.1|	-	1.7e-51	174.1	0.0	2.6e-51	173.5	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.24	gi|564291232|ref|YP_008877571.1|	-	4.5e-47	160.0	0.0	8e-47	159.2	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Peptidase_M20	PF01546.28	gi|564291233|ref|YP_008877572.1|	-	1.2e-24	87.2	0.2	1.7e-24	86.7	0.2	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|564291233|ref|YP_008877572.1|	-	4.5e-06	26.5	0.0	8e-06	25.7	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Aminotran_3	PF00202.21	gi|564291234|ref|YP_008877573.1|	-	2.4e-105	352.5	0.0	3.1e-105	352.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
AA_kinase	PF00696.28	gi|564291235|ref|YP_008877574.1|	-	1.7e-36	126.0	2.0	2.1e-36	125.7	2.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.24	gi|564291236|ref|YP_008877575.1|	-	4.1e-26	91.8	0.0	7.5e-26	91.0	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.18	gi|564291236|ref|YP_008877575.1|	-	8.1e-07	29.3	0.0	1.5e-06	28.5	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
RimK	PF08443.11	gi|564291237|ref|YP_008877576.1|	-	1.6e-18	67.0	0.0	1.3e-16	60.8	0.0	2.1	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.16	gi|564291237|ref|YP_008877576.1|	-	3.7e-09	36.2	0.0	5.6e-09	35.6	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.14	gi|564291237|ref|YP_008877576.1|	-	2.9e-07	30.7	0.0	4.5e-07	30.1	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.17	gi|564291237|ref|YP_008877576.1|	-	0.00011	21.8	0.0	0.00048	19.7	0.0	2.0	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_5	PF13549.6	gi|564291237|ref|YP_008877576.1|	-	0.00012	21.6	0.0	0.00059	19.3	0.0	2.1	1	1	1	2	2	2	1	ATP-grasp	domain
ATP-grasp	PF02222.22	gi|564291237|ref|YP_008877576.1|	-	0.00073	19.2	0.1	0.002	17.7	0.0	1.9	2	1	0	2	2	2	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.6	gi|564291237|ref|YP_008877576.1|	-	0.17	11.1	0.0	0.46	9.7	0.0	1.7	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
Rimk_N	PF18030.1	gi|564291237|ref|YP_008877576.1|	-	0.2	12.1	0.0	0.56	10.6	0.0	1.9	1	0	0	1	1	1	0	RimK	PreATP-grasp	domain
DNA_RNApol_7kD	PF03604.13	gi|564291238|ref|YP_008877577.1|	-	0.0014	18.3	1.9	0.012	15.3	1.8	2.0	1	1	1	2	2	2	2	DNA	directed	RNA	polymerase,	7	kDa	subunit
PhnA_Zn_Ribbon	PF08274.12	gi|564291238|ref|YP_008877577.1|	-	0.0021	18.0	1.2	0.0081	16.1	1.2	1.8	1	1	0	1	1	1	1	PhnA	Zinc-Ribbon
DZR	PF12773.7	gi|564291238|ref|YP_008877577.1|	-	0.028	14.5	0.3	0.39	10.8	0.5	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.6	gi|564291238|ref|YP_008877577.1|	-	0.031	14.6	0.5	0.042	14.2	0.5	1.3	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
HypA	PF01155.19	gi|564291238|ref|YP_008877577.1|	-	0.039	14.0	0.2	0.042	13.9	0.2	1.0	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
CpXC	PF14353.6	gi|564291238|ref|YP_008877577.1|	-	0.057	13.5	0.1	1.8	8.6	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
TackOD1	PF18551.1	gi|564291238|ref|YP_008877577.1|	-	0.12	12.1	0.1	0.12	12.0	0.1	1.0	1	0	0	1	1	1	0	Thaumarchaeal	output	domain	1
RNA_POL_M_15KD	PF02150.16	gi|564291238|ref|YP_008877577.1|	-	0.12	12.3	1.4	0.52	10.2	1.4	1.9	1	1	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
ADD_ATRX	PF17981.1	gi|564291238|ref|YP_008877577.1|	-	0.16	11.8	0.5	0.83	9.6	0.1	1.9	1	1	1	2	2	2	0	Cysteine	Rich	ADD	domain
Zn-ribbon_8	PF09723.10	gi|564291238|ref|YP_008877577.1|	-	0.17	12.0	1.1	0.55	10.4	1.2	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
Lyase_1	PF00206.20	gi|564291239|ref|YP_008877578.1|	-	4e-54	184.1	0.0	6.7e-54	183.4	0.0	1.3	1	0	0	1	1	1	1	Lyase
ASL_C2	PF14698.6	gi|564291239|ref|YP_008877578.1|	-	4e-16	59.5	1.4	1.8e-15	57.4	1.4	2.2	1	0	0	1	1	1	1	Argininosuccinate	lyase	C-terminal
Toprim	PF01751.22	gi|564291239|ref|YP_008877578.1|	-	0.084	13.1	1.9	2	8.7	0.1	2.6	2	1	0	2	2	2	0	Toprim	domain
SUD-M	PF11633.8	gi|564291239|ref|YP_008877578.1|	-	0.11	12.2	0.0	0.2	11.3	0.0	1.4	1	0	0	1	1	1	0	Single-stranded	poly(A)	binding	domain
UCR_Fe-S_N	PF10399.9	gi|564291239|ref|YP_008877578.1|	-	2.1	7.8	7.5	1.6	8.1	0.1	2.8	2	0	0	2	2	2	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Arginosuc_synth	PF00764.19	gi|564291240|ref|YP_008877579.1|	-	9.6e-148	492.6	0.1	1.1e-147	492.4	0.1	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.13	gi|564291240|ref|YP_008877579.1|	-	4.4e-06	26.3	0.0	7.6e-06	25.6	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.16	gi|564291240|ref|YP_008877579.1|	-	0.00077	18.4	0.0	0.0012	17.8	0.0	1.3	1	0	0	1	1	1	1	tRNA	methyl	transferase
Asn_synthase	PF00733.21	gi|564291240|ref|YP_008877579.1|	-	0.0008	19.2	0.0	0.0014	18.4	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
NAD_synthase	PF02540.17	gi|564291240|ref|YP_008877579.1|	-	0.0025	17.0	0.0	0.004	16.3	0.0	1.2	1	0	0	1	1	1	1	NAD	synthase
UPF0242	PF06785.11	gi|564291241|ref|YP_008877581.1|	-	0.51	10.4	3.0	0.73	9.9	3.0	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DASH_Spc19	PF08287.11	gi|564291241|ref|YP_008877581.1|	-	0.52	10.2	6.1	0.99	9.3	6.1	1.4	1	0	0	1	1	1	0	Spc19
DUF4897	PF16238.5	gi|564291242|ref|YP_008877582.1|	-	0.0026	17.6	0.0	0.0039	17.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4897)
Gram_pos_anchor	PF00746.21	gi|564291242|ref|YP_008877582.1|	-	0.086	12.8	0.8	0.086	12.8	0.8	1.9	2	0	0	2	2	2	0	LPXTG	cell	wall	anchor	motif
DUF4191	PF13829.6	gi|564291243|ref|YP_008877583.1|	-	6.5	6.0	7.0	6.8	6.0	7.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
DUF2116	PF09889.9	gi|564291243|ref|YP_008877583.1|	-	9.2	6.3	6.4	23	5.1	0.5	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
2_5_RNA_ligase2	PF13563.6	gi|564291244|ref|YP_008877584.1|	-	1.6e-17	63.8	0.1	1.8e-17	63.7	0.1	1.2	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.16	gi|564291244|ref|YP_008877584.1|	-	1.4e-05	25.2	0.0	0.0047	17.1	0.0	2.6	2	1	0	2	2	2	2	LigT	like	Phosphoesterase
CDPS	PF16715.5	gi|564291244|ref|YP_008877584.1|	-	0.087	12.5	0.0	0.8	9.3	0.0	2.0	2	0	0	2	2	2	0	Cyclodipeptide	synthase
DUF296	PF03479.15	gi|564291245|ref|YP_008877585.1|	-	9.5e-20	71.0	0.0	1.1e-19	70.7	0.0	1.0	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
PolC_DP2	PF03833.13	gi|564291246|ref|YP_008877586.1|	-	0	1338.9	0.0	0	1338.2	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	II	large	subunit	DP2
Intein_splicing	PF14890.6	gi|564291246|ref|YP_008877586.1|	-	2.8e-06	27.3	0.0	6.4e-06	26.1	0.0	1.5	1	0	0	1	1	1	1	Intein	splicing	domain
zinc-ribbons_6	PF07191.12	gi|564291246|ref|YP_008877586.1|	-	0.0022	18.0	11.0	0.045	13.7	7.6	2.4	2	0	0	2	2	2	2	zinc-ribbons
HypA	PF01155.19	gi|564291246|ref|YP_008877586.1|	-	0.1	12.6	18.1	1.1	9.3	1.1	3.5	2	1	1	3	3	3	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DZR	PF12773.7	gi|564291246|ref|YP_008877586.1|	-	0.21	11.7	17.6	4.8	7.3	11.7	3.0	2	1	0	2	2	2	0	Double	zinc	ribbon
Nop10p	PF04135.12	gi|564291246|ref|YP_008877586.1|	-	0.69	10.0	7.0	18	5.5	0.0	3.4	2	1	0	2	2	2	0	Nucleolar	RNA-binding	protein,	Nop10p	family
TackOD1	PF18551.1	gi|564291246|ref|YP_008877586.1|	-	2.7	7.6	10.6	12	5.5	0.2	2.3	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
2-Hacid_dh_C	PF02826.19	gi|564291248|ref|YP_008877588.1|	-	2.8e-58	196.2	0.0	5e-58	195.4	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|564291248|ref|YP_008877588.1|	-	5.2e-36	123.3	0.4	1.4e-35	121.9	0.6	1.6	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
ACT	PF01842.25	gi|564291248|ref|YP_008877588.1|	-	3.2e-07	30.0	0.7	1.5e-05	24.6	0.0	2.8	2	0	0	2	2	2	1	ACT	domain
NAD_binding_2	PF03446.15	gi|564291248|ref|YP_008877588.1|	-	0.00036	20.7	0.1	0.0018	18.4	0.0	2.3	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_C	PF03720.15	gi|564291248|ref|YP_008877588.1|	-	0.00055	20.3	0.0	0.004	17.5	0.0	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
IlvN	PF07991.12	gi|564291248|ref|YP_008877588.1|	-	0.00093	18.8	0.0	0.0041	16.7	0.0	2.0	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|564291248|ref|YP_008877588.1|	-	0.015	15.5	0.3	0.16	12.3	0.0	2.7	3	0	0	3	3	3	0	TrkA-N	domain
F420_oxidored	PF03807.17	gi|564291248|ref|YP_008877588.1|	-	0.024	15.2	0.4	0.19	12.4	0.0	2.7	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
XdhC_C	PF13478.6	gi|564291248|ref|YP_008877588.1|	-	0.043	14.3	0.0	0.11	13.0	0.0	1.7	1	0	0	1	1	1	0	XdhC	Rossmann	domain
NAD_binding_7	PF13241.6	gi|564291248|ref|YP_008877588.1|	-	0.049	14.1	0.0	0.16	12.5	0.0	1.9	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Shikimate_DH	PF01488.20	gi|564291248|ref|YP_008877588.1|	-	0.12	12.4	0.0	0.44	10.6	0.0	2.0	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
CBS	PF00571.28	gi|564291250|ref|YP_008877590.1|	-	7.4e-32	109.6	10.4	1.3e-09	38.3	0.2	4.1	4	0	0	4	4	4	4	CBS	domain
HGTP_anticodon	PF03129.20	gi|564291251|ref|YP_008877591.1|	-	2.3e-21	75.7	0.0	5.5e-21	74.5	0.0	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.25	gi|564291251|ref|YP_008877591.1|	-	7.2e-10	39.1	0.0	9.3e-09	35.5	0.0	2.3	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
zinc_ribbon_4	PF13717.6	gi|564291251|ref|YP_008877591.1|	-	0.071	13.1	0.6	14	5.7	0.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
ERCC4	PF02732.15	gi|564291253|ref|YP_008877593.1|	-	3.3e-23	82.6	0.0	1.4e-22	80.6	0.0	2.1	2	1	0	2	2	2	1	ERCC4	domain
Helicase_C	PF00271.31	gi|564291253|ref|YP_008877593.1|	-	8.6e-23	80.8	0.0	7.2e-22	77.8	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.29	gi|564291253|ref|YP_008877593.1|	-	2.1e-16	60.2	0.0	5e-16	59.0	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.15	gi|564291253|ref|YP_008877593.1|	-	1e-11	45.1	0.0	2.3e-11	44.0	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
HHH_5	PF14520.6	gi|564291253|ref|YP_008877593.1|	-	1.1e-11	45.2	0.3	4.5e-11	43.2	0.3	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH_2	PF12826.7	gi|564291253|ref|YP_008877593.1|	-	3.2e-11	43.2	0.1	8.8e-11	41.8	0.1	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
HHH	PF00633.23	gi|564291253|ref|YP_008877593.1|	-	2.6e-07	30.1	0.6	3.8e-05	23.3	0.0	2.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
Helicase_C_2	PF13307.6	gi|564291253|ref|YP_008877593.1|	-	0.014	15.6	1.2	0.05	13.8	0.1	2.5	1	1	2	3	3	3	0	Helicase	C-terminal	domain
RuvB_N	PF05496.12	gi|564291253|ref|YP_008877593.1|	-	0.024	14.4	0.0	0.052	13.3	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
5_3_exonuc	PF01367.20	gi|564291253|ref|YP_008877593.1|	-	0.073	13.7	0.2	0.65	10.6	0.0	2.5	2	1	1	3	3	2	0	5'-3'	exonuclease,	C-terminal	SAM	fold
HMG_box_5	PF14887.6	gi|564291253|ref|YP_008877593.1|	-	0.25	11.3	1.6	0.54	10.3	0.4	2.2	2	0	0	2	2	2	0	HMG	(high	mobility	group)	box	5
Auto_anti-p27	PF06677.12	gi|564291254|ref|YP_008877594.1|	-	2e-14	53.4	0.4	2.9e-14	52.9	0.4	1.2	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DZR	PF12773.7	gi|564291254|ref|YP_008877594.1|	-	0.0017	18.3	1.5	0.0034	17.4	1.5	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.12	gi|564291254|ref|YP_008877594.1|	-	0.0043	17.0	0.6	0.0069	16.3	0.6	1.3	1	0	0	1	1	1	1	zinc-ribbons
GFA	PF04828.14	gi|564291254|ref|YP_008877594.1|	-	0.039	14.3	1.0	2.2	8.7	0.1	2.4	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-C3HC4_3	PF13920.6	gi|564291254|ref|YP_008877594.1|	-	0.12	12.2	0.4	0.2	11.5	0.4	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
FYVE_2	PF02318.16	gi|564291254|ref|YP_008877594.1|	-	0.13	12.5	0.2	0.23	11.7	0.2	1.3	1	0	0	1	1	1	0	FYVE-type	zinc	finger
Nudix_N_2	PF14803.6	gi|564291254|ref|YP_008877594.1|	-	0.2	11.6	2.0	16	5.5	0.1	2.7	2	0	0	2	2	2	0	Nudix	N-terminal
zf-UDP	PF14569.6	gi|564291254|ref|YP_008877594.1|	-	0.32	11.1	2.2	0.84	9.8	2.2	1.6	1	1	0	1	1	1	0	Zinc-binding	RING-finger
A2L_zn_ribbon	PF08792.10	gi|564291254|ref|YP_008877594.1|	-	0.33	10.7	1.3	0.53	10.1	1.3	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|564291254|ref|YP_008877594.1|	-	0.35	10.3	4.3	1.7	8.1	4.4	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564291254|ref|YP_008877594.1|	-	0.66	9.8	3.5	1.6	8.6	3.5	1.7	1	0	0	1	1	1	0	zinc-ribbon	domain
SOG2	PF10428.9	gi|564291254|ref|YP_008877594.1|	-	0.67	9.1	8.7	0.82	8.8	8.7	1.3	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
Ldh_1_N	PF00056.23	gi|564291255|ref|YP_008877595.1|	-	5.8e-39	133.4	0.2	8.4e-39	132.9	0.2	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.18	gi|564291255|ref|YP_008877595.1|	-	7.3e-29	100.8	0.0	1.2e-28	100.1	0.0	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
DUF2072	PF09845.9	gi|564291257|ref|YP_008877597.1|	-	1.6e-32	112.5	4.3	2.6e-30	105.4	4.3	2.2	1	1	0	1	1	1	1	Zn-ribbon	containing	protein
Zn-ribbon_8	PF09723.10	gi|564291257|ref|YP_008877597.1|	-	0.012	15.7	2.1	0.029	14.5	2.1	1.6	1	0	0	1	1	1	0	Zinc	ribbon	domain
DUF1451	PF07295.11	gi|564291257|ref|YP_008877597.1|	-	0.11	12.5	1.8	0.17	11.9	0.7	1.7	2	0	0	2	2	2	0	Zinc-ribbon	containing	domain
HypA	PF01155.19	gi|564291257|ref|YP_008877597.1|	-	0.18	11.8	0.4	0.28	11.2	0.4	1.3	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zf-IS66	PF13005.7	gi|564291257|ref|YP_008877597.1|	-	0.31	11.5	3.7	0.62	10.5	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DUF2073	PF09846.9	gi|564291258|ref|YP_008877598.1|	-	9.5e-46	154.0	0.7	1.2e-45	153.7	0.7	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2073)
MMR_HSR1	PF01926.23	gi|564291259|ref|YP_008877599.1|	-	6.2e-15	55.3	0.0	8.3e-15	54.9	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.27	gi|564291259|ref|YP_008877599.1|	-	1.3e-10	41.1	0.2	0.00096	18.7	0.0	3.4	1	1	1	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.21	gi|564291259|ref|YP_008877599.1|	-	1.1e-07	31.5	0.0	0.0001	21.8	0.0	2.7	2	1	1	3	3	3	2	ADP-ribosylation	factor	family
FeoB_N	PF02421.18	gi|564291259|ref|YP_008877599.1|	-	1.6e-05	24.5	0.3	0.00014	21.4	0.3	2.3	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
RsgA_GTPase	PF03193.16	gi|564291259|ref|YP_008877599.1|	-	2.4e-05	24.3	0.0	0.1	12.5	0.0	2.2	2	0	0	2	2	2	2	RsgA	GTPase
Septin	PF00735.18	gi|564291259|ref|YP_008877599.1|	-	0.00022	20.6	0.0	0.00031	20.1	0.0	1.3	1	1	0	1	1	1	1	Septin
SRPRB	PF09439.10	gi|564291259|ref|YP_008877599.1|	-	0.00029	20.3	0.0	0.14	11.6	0.0	2.2	2	0	0	2	2	2	2	Signal	recognition	particle	receptor	beta	subunit
Roc	PF08477.13	gi|564291259|ref|YP_008877599.1|	-	0.00033	20.9	0.0	0.0076	16.5	0.0	2.1	1	1	1	2	2	2	1	Ras	of	Complex,	Roc,	domain	of	DAPkinase
MMR_HSR1_Xtn	PF16897.5	gi|564291259|ref|YP_008877599.1|	-	0.00037	20.5	0.0	0.00068	19.6	0.0	1.5	1	0	0	1	1	1	1	C-terminal	region	of	MMR_HSR1	domain
Ras	PF00071.22	gi|564291259|ref|YP_008877599.1|	-	0.00063	19.4	0.0	0.2	11.3	0.0	2.5	2	1	0	2	2	2	1	Ras	family
AAA_28	PF13521.6	gi|564291259|ref|YP_008877599.1|	-	0.0012	19.2	0.2	0.094	12.9	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
NB-ARC	PF00931.22	gi|564291259|ref|YP_008877599.1|	-	0.0019	17.4	0.0	0.0031	16.7	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
AAA_24	PF13479.6	gi|564291259|ref|YP_008877599.1|	-	0.002	17.9	0.1	0.0077	16.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.6	gi|564291259|ref|YP_008877599.1|	-	0.0023	18.5	0.0	0.01	16.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
Dynamin_N	PF00350.23	gi|564291259|ref|YP_008877599.1|	-	0.0056	16.8	0.0	0.65	10.0	0.1	2.4	1	1	1	2	2	2	1	Dynamin	family
AAA	PF00004.29	gi|564291259|ref|YP_008877599.1|	-	0.0064	16.9	0.0	0.024	15.0	0.0	2.0	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.19	gi|564291259|ref|YP_008877599.1|	-	0.0089	15.6	0.1	2.6	7.6	0.1	2.3	2	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
RNA_helicase	PF00910.22	gi|564291259|ref|YP_008877599.1|	-	0.013	15.8	0.0	0.025	15.0	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
ATPase_2	PF01637.18	gi|564291259|ref|YP_008877599.1|	-	0.017	15.0	0.0	0.024	14.5	0.0	1.6	1	1	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
RuvB_N	PF05496.12	gi|564291259|ref|YP_008877599.1|	-	0.034	13.9	0.0	0.07	12.9	0.0	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	RuvB	P-loop	domain
AAA_16	PF13191.6	gi|564291259|ref|YP_008877599.1|	-	0.036	14.4	0.0	0.074	13.4	0.0	1.7	1	1	0	1	1	1	0	AAA	ATPase	domain
ABC_tran	PF00005.27	gi|564291259|ref|YP_008877599.1|	-	0.045	14.3	0.0	0.075	13.5	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.6	gi|564291259|ref|YP_008877599.1|	-	0.077	12.6	0.1	0.18	11.3	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
MeaB	PF03308.16	gi|564291259|ref|YP_008877599.1|	-	0.088	11.8	0.1	3.5	6.5	0.0	2.7	3	1	0	3	3	3	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
NACHT	PF05729.12	gi|564291259|ref|YP_008877599.1|	-	0.1	12.5	0.0	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
Parvo_NS1	PF01057.17	gi|564291259|ref|YP_008877599.1|	-	0.17	10.9	0.0	0.3	10.1	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/all.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/all.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/all.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/all.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:43:24 2019
# [ok]