#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.11	gi|564287958|ref|YP_008874149.1|	-	5e-22	77.7	0.0	1.7e-21	76.0	0.0	2.0	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|564287958|ref|YP_008874149.1|	-	3.3e-10	40.4	0.0	7.6e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564287958|ref|YP_008874149.1|	-	1.2e-09	38.8	0.3	1.4e-08	35.3	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
DUF815	PF05673.13	gi|564287958|ref|YP_008874149.1|	-	0.0021	17.3	0.0	0.0035	16.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA	PF00004.29	gi|564287958|ref|YP_008874149.1|	-	0.0053	17.2	0.0	0.013	15.9	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.12	gi|564287958|ref|YP_008874149.1|	-	0.0072	16.3	0.0	0.015	15.2	0.0	1.5	2	0	0	2	2	2	1	NACHT	domain
ATPase_2	PF01637.18	gi|564287958|ref|YP_008874149.1|	-	0.0088	16.0	0.0	0.014	15.3	0.0	1.4	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
RNA_helicase	PF00910.22	gi|564287958|ref|YP_008874149.1|	-	0.035	14.5	0.0	0.072	13.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_7	PF12775.7	gi|564287958|ref|YP_008874149.1|	-	0.054	13.0	0.0	0.097	12.2	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
DEAD	PF00270.29	gi|564287958|ref|YP_008874149.1|	-	0.083	12.7	0.3	5.4	6.8	0.0	2.3	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
HalOD1	PF18545.1	gi|564287959|ref|YP_008874150.1|	-	5.1e-15	55.5	0.3	6.5e-15	55.2	0.3	1.2	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Hemopexin	PF00045.19	gi|564287960|ref|YP_008874151.1|	-	0.011	15.6	1.1	0.11	12.5	0.5	2.5	2	0	0	2	2	2	0	Hemopexin
TnpW	PF14202.6	gi|564287960|ref|YP_008874151.1|	-	0.29	11.0	0.5	0.6	10.0	0.5	1.5	1	0	0	1	1	1	0	Transposon-encoded	protein	TnpW
TetR_C_6	PF13977.6	gi|564287961|ref|YP_008874152.1|	-	1.1e-12	48.2	0.2	1.6e-12	47.7	0.2	1.2	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564287961|ref|YP_008874152.1|	-	2.7e-10	39.9	0.4	5.9e-10	38.8	0.0	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|564287961|ref|YP_008874152.1|	-	1.6e-05	25.0	0.0	3e-05	24.2	0.0	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564287961|ref|YP_008874152.1|	-	2.6e-05	24.2	0.1	4.3e-05	23.5	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|564287961|ref|YP_008874152.1|	-	0.00049	20.3	0.5	0.0008	19.7	0.1	1.7	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|564287961|ref|YP_008874152.1|	-	0.0065	16.5	0.1	0.011	15.8	0.1	1.4	1	0	0	1	1	1	1	AefR-like	transcriptional	repressor,	C-terminal	domain
Sigma70_r4	PF04545.16	gi|564287961|ref|YP_008874152.1|	-	0.03	13.8	0.0	0.072	12.6	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
TetR_C_17	PF17922.1	gi|564287961|ref|YP_008874152.1|	-	0.044	13.9	0.0	0.2	11.7	0.0	1.9	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_5	PF01022.20	gi|564287961|ref|YP_008874152.1|	-	0.056	13.3	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
CARDB	PF07705.11	gi|564287962|ref|YP_008874153.1|	-	1.5e-14	54.0	25.7	0.0023	18.1	0.1	5.5	5	0	0	5	5	5	5	CARDB
NPCBM_assoc	PF10633.9	gi|564287962|ref|YP_008874153.1|	-	1.7e-13	50.6	18.6	9.5e-05	22.6	0.4	7.9	6	3	0	6	6	6	3	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|564287962|ref|YP_008874153.1|	-	3.2e-07	30.5	37.6	0.069	13.5	1.2	7.0	5	3	0	5	5	5	5	Domain	of	unknown	function	DUF11
ASH	PF15780.5	gi|564287962|ref|YP_008874153.1|	-	1.5e-05	25.1	10.6	0.066	13.4	0.0	5.3	5	1	0	5	5	5	2	Abnormal	spindle-like	microcephaly-assoc'd,	ASPM-SPD-2-Hydin
Fn3-like	PF14310.6	gi|564287962|ref|YP_008874153.1|	-	5.5e-05	23.2	12.5	0.95	9.6	0.2	7.3	9	0	0	9	9	8	1	Fibronectin	type	III-like	domain
N_BRCA1_IG	PF16158.5	gi|564287962|ref|YP_008874153.1|	-	0.00017	22.3	2.3	5.7	7.7	0.1	5.2	6	0	0	6	6	6	1	Ig-like	domain	from	next	to	BRCA1	gene
Transglut_C	PF00927.22	gi|564287962|ref|YP_008874153.1|	-	0.00094	19.3	0.2	12	6.1	0.0	4.5	5	0	0	5	5	5	1	Transglutaminase	family,	C-terminal	ig	like	domain
DUF4832	PF16116.5	gi|564287962|ref|YP_008874153.1|	-	0.0028	17.5	4.9	11	5.7	0.0	4.9	4	1	1	5	5	5	1	Domain	of	unknown	function	(DUF4832)
FAS_meander	PF17951.1	gi|564287962|ref|YP_008874153.1|	-	0.025	14.4	0.0	0.14	11.9	0.0	2.3	1	0	0	1	1	1	0	Fatty	acid	synthase	meander	beta	sheet	domain
AP3B1_C	PF14796.6	gi|564287962|ref|YP_008874153.1|	-	0.032	14.5	3.3	0.24	11.6	0.0	3.2	4	0	0	4	4	4	0	Clathrin-adaptor	complex-3	beta-1	subunit	C-terminal
BppU_N	PF10651.9	gi|564287962|ref|YP_008874153.1|	-	0.036	13.8	0.5	0.13	12.0	0.1	2.1	2	0	0	2	2	2	0	BppU	N-terminal	domain
Alpha_adaptinC2	PF02883.20	gi|564287962|ref|YP_008874153.1|	-	0.04	14.2	1.1	2.2	8.6	0.0	3.1	3	0	0	3	3	3	0	Adaptin	C-terminal	domain
MBG	PF17883.1	gi|564287962|ref|YP_008874153.1|	-	0.056	14.0	0.4	0.056	14.0	0.4	4.9	4	2	1	5	5	5	0	MBG	domain
Pilin	PF00114.19	gi|564287962|ref|YP_008874153.1|	-	3.7	8.5	19.1	6.5	7.7	0.1	5.1	5	0	0	5	5	5	0	Pilin	(bacterial	filament)
MMPL	PF03176.15	gi|564287963|ref|YP_008874154.1|	-	2e-27	96.0	26.0	4.7e-20	71.8	1.7	2.7	2	1	0	2	2	2	2	MMPL	family
Patched	PF02460.18	gi|564287963|ref|YP_008874154.1|	-	8.5e-08	30.8	12.8	5.8e-07	28.0	5.9	2.4	2	0	0	2	2	2	2	Patched	family
Sterol-sensing	PF12349.8	gi|564287963|ref|YP_008874154.1|	-	1.2e-06	28.4	4.4	0.00032	20.6	0.5	2.7	2	0	0	2	2	2	2	Sterol-sensing	domain	of	SREBP	cleavage-activation
TetR_C_6	PF13977.6	gi|564287964|ref|YP_008874155.1|	-	2.8e-13	50.1	0.0	4.2e-13	49.5	0.0	1.3	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564287964|ref|YP_008874155.1|	-	1.4e-10	40.8	0.6	5.4e-10	38.9	0.1	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|564287964|ref|YP_008874155.1|	-	0.00025	21.3	0.3	0.00056	20.1	0.2	1.7	1	1	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564287964|ref|YP_008874155.1|	-	0.016	15.3	0.2	0.032	14.3	0.2	1.7	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|564287964|ref|YP_008874155.1|	-	0.018	15.0	0.2	0.028	14.5	0.2	1.2	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564287964|ref|YP_008874155.1|	-	0.04	14.0	0.4	0.089	12.9	0.0	1.8	2	1	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_36	PF18598.1	gi|564287964|ref|YP_008874155.1|	-	0.053	13.5	0.2	0.17	11.9	0.1	1.8	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HTH_38	PF13936.6	gi|564287964|ref|YP_008874155.1|	-	0.055	13.2	0.0	0.15	11.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
TetR_C_37	PF18665.1	gi|564287964|ref|YP_008874155.1|	-	0.083	13.5	0.1	0.21	12.2	0.0	1.7	2	1	1	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
LUD_dom	PF02589.15	gi|564287965|ref|YP_008874156.1|	-	8.4e-40	136.5	0.1	1e-39	136.2	0.1	1.2	1	0	0	1	1	1	1	LUD	domain
OKR_DC_1_N	PF03709.15	gi|564287965|ref|YP_008874156.1|	-	0.016	15.5	0.1	0.044	14.1	0.1	1.8	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
YcaO	PF02624.16	gi|564287965|ref|YP_008874156.1|	-	0.025	13.8	0.0	0.041	13.2	0.0	1.3	1	0	0	1	1	1	0	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
Secretin_N	PF03958.17	gi|564287965|ref|YP_008874156.1|	-	0.027	14.9	1.0	0.096	13.1	0.7	2.2	1	1	1	2	2	2	0	Bacterial	type	II/III	secretion	system	short	domain
UPF0180	PF03698.13	gi|564287965|ref|YP_008874156.1|	-	0.036	14.2	0.1	0.096	12.9	0.1	1.7	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
RsgA_GTPase	PF03193.16	gi|564287965|ref|YP_008874156.1|	-	0.037	13.9	0.1	0.07	13.0	0.1	1.4	1	0	0	1	1	1	0	RsgA	GTPase
CHASE2	PF05226.11	gi|564287965|ref|YP_008874156.1|	-	0.06	13.0	0.1	0.061	13.0	0.1	1.2	1	0	0	1	1	1	0	CHASE2	domain
PrpR_N	PF06506.11	gi|564287965|ref|YP_008874156.1|	-	0.071	12.7	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Propionate	catabolism	activator
zinc_ribbon_10	PF10058.9	gi|564287966|ref|YP_008874157.1|	-	0.00054	19.6	0.1	0.00073	19.2	0.1	1.3	1	0	0	1	1	1	1	Predicted	integral	membrane	zinc-ribbon	metal-binding	protein
TackOD1	PF18551.1	gi|564287966|ref|YP_008874157.1|	-	0.002	17.8	0.2	0.0023	17.6	0.2	1.1	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
C1_4	PF07975.12	gi|564287966|ref|YP_008874157.1|	-	0.0059	16.8	0.3	0.55	10.5	0.0	2.1	2	0	0	2	2	2	1	TFIIH	C1-like	domain
zf_UBZ	PF18439.1	gi|564287966|ref|YP_008874157.1|	-	0.01	15.4	2.1	0.15	11.7	0.2	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
IBR	PF01485.21	gi|564287966|ref|YP_008874157.1|	-	0.013	15.7	0.4	0.017	15.4	0.4	1.3	1	1	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Zn-ribbon_8	PF09723.10	gi|564287966|ref|YP_008874157.1|	-	0.013	15.6	1.7	0.23	11.6	0.3	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|564287966|ref|YP_008874157.1|	-	0.018	15.0	1.9	0.23	11.5	2.4	2.0	1	1	1	2	2	2	0	zinc-ribbons
HscB_4_cys	PF18256.1	gi|564287966|ref|YP_008874157.1|	-	0.02	14.7	0.5	4.5	7.2	0.1	2.3	2	0	0	2	2	2	0	Co-chaperone	HscB	tetracysteine	metal	binding	motif
zinc_ribbon_9	PF14369.6	gi|564287966|ref|YP_008874157.1|	-	0.023	14.9	1.2	3.3	8.0	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon
zinc_ribbon_4	PF13717.6	gi|564287966|ref|YP_008874157.1|	-	0.031	14.2	2.2	0.22	11.5	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.11	gi|564287966|ref|YP_008874157.1|	-	0.045	13.7	0.7	1.6	8.7	0.2	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
TRAF6_Z2	PF18048.1	gi|564287966|ref|YP_008874157.1|	-	0.055	13.6	0.4	0.055	13.6	0.4	2.0	2	0	0	2	2	2	0	TNF	receptor-associated	factor	6	zinc	finger	2
UPF0547	PF10571.9	gi|564287966|ref|YP_008874157.1|	-	0.062	13.4	5.3	0.67	10.1	1.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.6	gi|564287966|ref|YP_008874157.1|	-	0.072	12.9	1.2	3.4	7.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
CpXC	PF14353.6	gi|564287966|ref|YP_008874157.1|	-	0.078	13.0	0.6	0.84	9.7	0.1	2.0	2	0	0	2	2	2	0	CpXC	protein
Cys_rich_KTR	PF14205.6	gi|564287966|ref|YP_008874157.1|	-	0.1	12.4	0.2	4.8	7.1	0.0	2.1	2	0	0	2	2	2	0	Cysteine-rich	KTR
PhnA_Zn_Ribbon	PF08274.12	gi|564287966|ref|YP_008874157.1|	-	0.14	12.2	2.6	9.1	6.3	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Peripla_BP_2	PF01497.18	gi|564287967|ref|YP_008874158.1|	-	4.4e-13	49.3	0.0	2.8e-12	46.7	0.0	1.9	2	0	0	2	2	2	1	Periplasmic	binding	protein
FecCD	PF01032.18	gi|564287968|ref|YP_008874159.1|	-	2e-84	283.2	34.6	2.6e-84	282.9	34.6	1.2	1	0	0	1	1	1	1	FecCD	transport	family
PT-VENN	PF04829.13	gi|564287968|ref|YP_008874159.1|	-	0.26	11.4	6.7	0.56	10.3	0.1	3.6	3	0	0	3	3	3	0	Pre-toxin	domain	with	VENN	motif
ABC_tran	PF00005.27	gi|564287969|ref|YP_008874160.1|	-	8.5e-30	104.1	0.0	1.2e-29	103.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287969|ref|YP_008874160.1|	-	3.5e-13	50.0	1.9	5.2e-06	26.5	0.2	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287969|ref|YP_008874160.1|	-	5.4e-13	48.9	0.1	1.3e-06	28.0	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564287969|ref|YP_008874160.1|	-	4.2e-07	30.0	0.0	6.3e-05	22.8	0.0	2.1	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287969|ref|YP_008874160.1|	-	5.3e-07	29.3	0.0	1.3e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.9	gi|564287969|ref|YP_008874160.1|	-	2.3e-05	23.4	1.2	0.045	12.5	0.0	3.0	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_22	PF13401.6	gi|564287969|ref|YP_008874160.1|	-	7.2e-05	23.1	0.2	0.00043	20.6	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|564287969|ref|YP_008874160.1|	-	0.0001	22.7	0.1	0.00027	21.3	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.6	gi|564287969|ref|YP_008874160.1|	-	0.00022	20.9	0.4	0.012	15.2	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|564287969|ref|YP_008874160.1|	-	0.00035	21.1	0.0	0.00059	20.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564287969|ref|YP_008874160.1|	-	0.0029	17.3	0.1	0.0057	16.4	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564287969|ref|YP_008874160.1|	-	0.0065	16.6	0.1	0.02	15.1	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|564287969|ref|YP_008874160.1|	-	0.012	15.7	0.1	0.43	10.7	0.0	2.3	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
TniB	PF05621.11	gi|564287969|ref|YP_008874160.1|	-	0.013	14.9	0.1	0.43	10.0	0.1	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
MukB	PF04310.12	gi|564287969|ref|YP_008874160.1|	-	0.015	15.1	0.0	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	MukB	N-terminal
AAA_28	PF13521.6	gi|564287969|ref|YP_008874160.1|	-	0.016	15.4	0.0	0.038	14.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.12	gi|564287969|ref|YP_008874160.1|	-	0.018	15.0	0.0	0.036	14.0	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
RsgA_GTPase	PF03193.16	gi|564287969|ref|YP_008874160.1|	-	0.019	14.9	0.0	0.043	13.7	0.0	1.6	1	0	0	1	1	1	0	RsgA	GTPase
AAA_14	PF13173.6	gi|564287969|ref|YP_008874160.1|	-	0.025	14.6	0.0	0.08	13.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Adeno_IVa2	PF02456.15	gi|564287969|ref|YP_008874160.1|	-	0.028	13.2	0.0	1.1	8.0	0.0	2.1	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
ATP_bind_1	PF03029.17	gi|564287969|ref|YP_008874160.1|	-	0.03	14.1	0.1	0.98	9.2	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA	PF00004.29	gi|564287969|ref|YP_008874160.1|	-	0.037	14.4	0.2	0.13	12.7	0.0	1.9	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_27	PF13514.6	gi|564287969|ref|YP_008874160.1|	-	0.061	12.9	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.22	gi|564287969|ref|YP_008874160.1|	-	0.069	13.6	0.0	0.21	12.0	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
ATPase_2	PF01637.18	gi|564287969|ref|YP_008874160.1|	-	0.07	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Zeta_toxin	PF06414.12	gi|564287969|ref|YP_008874160.1|	-	0.077	12.3	0.0	0.18	11.1	0.0	1.5	1	0	0	1	1	1	0	Zeta	toxin
AAA_24	PF13479.6	gi|564287969|ref|YP_008874160.1|	-	0.091	12.5	0.2	0.26	11.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.15	gi|564287969|ref|YP_008874160.1|	-	0.094	12.6	0.2	1.4	8.8	0.0	2.3	2	0	0	2	2	2	0	NTPase
cobW	PF02492.19	gi|564287969|ref|YP_008874160.1|	-	0.095	12.3	0.2	0.18	11.4	0.2	1.7	1	1	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_5	PF07728.14	gi|564287969|ref|YP_008874160.1|	-	0.14	12.2	0.0	0.37	10.8	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
VirE	PF05272.11	gi|564287969|ref|YP_008874160.1|	-	0.16	11.7	0.0	0.25	11.1	0.0	1.2	1	0	0	1	1	1	0	Virulence-associated	protein	E
AAA_18	PF13238.6	gi|564287969|ref|YP_008874160.1|	-	0.16	12.5	0.0	0.49	10.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
PAPS_reduct	PF01507.19	gi|564287969|ref|YP_008874160.1|	-	0.19	11.7	0.0	0.36	10.9	0.0	1.4	1	0	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
SBF	PF01758.16	gi|564287970|ref|YP_008874161.1|	-	7.1e-38	130.2	10.5	9.9e-38	129.8	10.5	1.2	1	0	0	1	1	1	1	Sodium	Bile	acid	symporter	family
SBF_like	PF13593.6	gi|564287970|ref|YP_008874161.1|	-	6.5e-14	52.0	8.3	9.1e-14	51.5	8.3	1.3	1	0	0	1	1	1	1	SBF-like	CPA	transporter	family	(DUF4137)
CBP_BcsF	PF11120.8	gi|564287970|ref|YP_008874161.1|	-	0.045	13.9	0.3	0.15	12.2	0.3	2.0	1	0	0	1	1	1	0	Cellulose	biosynthesis	protein	BcsF
Mem_trans	PF03547.18	gi|564287970|ref|YP_008874161.1|	-	0.2	10.0	9.2	0.014	13.9	3.3	1.9	1	1	1	2	2	2	0	Membrane	transport	protein
Bestrophin	PF01062.21	gi|564287970|ref|YP_008874161.1|	-	0.22	10.8	0.9	0.47	9.8	0.9	1.5	1	0	0	1	1	1	0	Bestrophin,	RFP-TM,	chloride	channel
Bac_export_2	PF01312.19	gi|564287970|ref|YP_008874161.1|	-	0.51	9.5	4.0	0.93	8.6	4.0	1.4	1	0	0	1	1	1	0	FlhB	HrpN	YscU	SpaS	Family
UbiA	PF01040.18	gi|564287971|ref|YP_008874162.1|	-	1.2e-15	57.5	20.2	2e-15	56.8	20.1	1.4	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
HisKA_7TM	PF16927.5	gi|564287972|ref|YP_008874163.1|	-	3.2e-52	177.7	16.0	4.1e-52	177.4	16.0	1.1	1	0	0	1	1	1	1	N-terminal	7TM	region	of	histidine	kinase
HATPase_c	PF02518.26	gi|564287972|ref|YP_008874163.1|	-	4.2e-13	49.8	0.1	7.9e-13	48.9	0.1	1.4	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|564287972|ref|YP_008874163.1|	-	9.3e-06	25.6	0.1	1.9e-05	24.6	0.1	1.5	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
PAS_4	PF08448.10	gi|564287972|ref|YP_008874163.1|	-	0.0006	20.0	0.1	0.0033	17.6	0.1	2.3	1	1	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564287972|ref|YP_008874163.1|	-	0.00079	19.4	0.0	0.0036	17.3	0.0	2.1	2	0	0	2	2	2	1	PAS	domain
PAS_9	PF13426.7	gi|564287972|ref|YP_008874163.1|	-	0.0016	18.7	0.0	0.0057	16.9	0.0	1.9	1	1	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|564287972|ref|YP_008874163.1|	-	0.0037	17.3	0.1	0.012	15.6	0.1	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_10	PF13596.6	gi|564287972|ref|YP_008874163.1|	-	0.014	15.9	0.0	0.055	14.1	0.0	2.0	1	1	1	2	2	2	0	PAS	domain
HATPase_c_3	PF13589.6	gi|564287972|ref|YP_008874163.1|	-	0.041	13.7	0.0	0.078	12.8	0.0	1.4	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TusA	PF01206.17	gi|564287973|ref|YP_008874164.1|	-	8.2e-07	28.8	0.0	1.1e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2270	PF10028.9	gi|564287974|ref|YP_008874165.1|	-	3.9e-74	248.2	4.9	4.6e-74	248.0	4.9	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
Acyl_transf_3	PF01757.22	gi|564287974|ref|YP_008874165.1|	-	0.025	13.6	0.2	0.025	13.6	0.2	2.0	2	0	0	2	2	2	0	Acyltransferase	family
Jnk-SapK_ap_N	PF09744.9	gi|564287975|ref|YP_008874166.1|	-	0.00015	22.0	17.3	0.0002	21.6	17.3	1.1	1	0	0	1	1	1	1	JNK_SAPK-associated	protein-1
Mt_ATP-synt_B	PF05405.14	gi|564287975|ref|YP_008874166.1|	-	0.0018	17.9	4.6	0.0041	16.7	4.2	1.6	1	1	1	2	2	2	1	Mitochondrial	ATP	synthase	B	chain	precursor	(ATP-synt_B)
Atg14	PF10186.9	gi|564287975|ref|YP_008874166.1|	-	0.0019	17.3	10.1	0.0025	17.0	10.1	1.1	1	0	0	1	1	1	1	Vacuolar	sorting	38	and	autophagy-related	subunit	14
Tho2	PF11262.8	gi|564287975|ref|YP_008874166.1|	-	0.0024	17.1	8.3	0.0028	16.9	8.3	1.0	1	0	0	1	1	1	1	Transcription	factor/nuclear	export	subunit	protein	2
HemX	PF04375.14	gi|564287975|ref|YP_008874166.1|	-	0.0032	16.8	4.9	0.0039	16.5	4.9	1.2	1	0	0	1	1	1	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Golgin_A5	PF09787.9	gi|564287975|ref|YP_008874166.1|	-	0.0033	16.9	14.2	0.0044	16.5	14.2	1.1	1	0	0	1	1	1	1	Golgin	subfamily	A	member	5
DUF3552	PF12072.8	gi|564287975|ref|YP_008874166.1|	-	0.004	16.6	11.8	0.0047	16.4	11.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3552)
DUF3450	PF11932.8	gi|564287975|ref|YP_008874166.1|	-	0.0042	16.4	9.2	0.0054	16.1	9.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
GBP_C	PF02841.14	gi|564287975|ref|YP_008874166.1|	-	0.0071	15.8	9.8	0.0081	15.6	9.8	1.0	1	0	0	1	1	1	1	Guanylate-binding	protein,	C-terminal	domain
ERM	PF00769.19	gi|564287975|ref|YP_008874166.1|	-	0.0082	16.0	14.9	0.01	15.7	14.9	1.1	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
YabA	PF06156.13	gi|564287975|ref|YP_008874166.1|	-	0.013	16.2	7.1	0.013	16.2	7.1	2.1	1	1	1	2	2	2	0	Initiation	control	protein	YabA
UPF0242	PF06785.11	gi|564287975|ref|YP_008874166.1|	-	0.021	15.0	11.2	0.027	14.6	11.2	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DivIC	PF04977.15	gi|564287975|ref|YP_008874166.1|	-	0.024	14.4	3.3	0.024	14.4	3.3	2.4	1	1	1	2	2	2	0	Septum	formation	initiator
PEARLI-4	PF05278.12	gi|564287975|ref|YP_008874166.1|	-	0.025	14.2	6.2	0.034	13.8	6.2	1.3	1	0	0	1	1	1	0	Arabidopsis	phospholipase-like	protein	(PEARLI	4)
ADIP	PF11559.8	gi|564287975|ref|YP_008874166.1|	-	0.037	14.1	16.7	0.052	13.6	16.7	1.3	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
RasGAP_C	PF03836.15	gi|564287975|ref|YP_008874166.1|	-	0.058	13.5	5.1	0.073	13.2	5.1	1.1	1	0	0	1	1	1	0	RasGAP	C-terminus
KASH_CCD	PF14662.6	gi|564287975|ref|YP_008874166.1|	-	0.066	13.0	15.5	0.088	12.6	15.5	1.1	1	0	0	1	1	1	0	Coiled-coil	region	of	CCDC155	or	KASH
Spc7	PF08317.11	gi|564287975|ref|YP_008874166.1|	-	0.082	11.8	13.4	0.1	11.4	13.4	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Thioesterase	PF00975.20	gi|564287975|ref|YP_008874166.1|	-	0.14	12.2	0.9	0.17	11.9	0.9	1.0	1	0	0	1	1	1	0	Thioesterase	domain
DivIVA	PF05103.13	gi|564287975|ref|YP_008874166.1|	-	0.16	12.1	13.7	0.21	11.7	13.7	1.1	1	0	0	1	1	1	0	DivIVA	protein
DUF4407	PF14362.6	gi|564287975|ref|YP_008874166.1|	-	0.16	11.3	8.0	0.21	10.9	8.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
FUSC	PF04632.12	gi|564287975|ref|YP_008874166.1|	-	0.17	10.4	4.1	0.2	10.1	4.1	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Exonuc_VII_L	PF02601.15	gi|564287975|ref|YP_008874166.1|	-	0.17	11.4	5.1	0.2	11.2	5.1	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fungal_TACC	PF12709.7	gi|564287975|ref|YP_008874166.1|	-	0.18	12.2	11.7	0.26	11.8	3.0	2.5	1	1	1	2	2	2	0	Fungal	Transforming	acidic	coiled-coil	(TACC)	proteins
DUF641	PF04859.12	gi|564287975|ref|YP_008874166.1|	-	0.22	11.9	9.9	0.25	11.7	9.4	1.4	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
MAT1	PF06391.13	gi|564287975|ref|YP_008874166.1|	-	0.23	11.3	11.2	0.28	11.0	11.2	1.1	1	0	0	1	1	1	0	CDK-activating	kinase	assembly	factor	MAT1
FapA	PF03961.13	gi|564287975|ref|YP_008874166.1|	-	0.25	9.9	5.4	0.29	9.7	5.4	1.1	1	0	0	1	1	1	0	Flagellar	Assembly	Protein	A
Fez1	PF06818.15	gi|564287975|ref|YP_008874166.1|	-	0.26	11.7	13.4	0.33	11.4	13.4	1.1	1	0	0	1	1	1	0	Fez1
TMPIT	PF07851.13	gi|564287975|ref|YP_008874166.1|	-	0.3	10.3	7.8	0.39	9.9	7.8	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
KxDL	PF10241.9	gi|564287975|ref|YP_008874166.1|	-	0.31	11.3	11.1	0.17	12.2	6.9	2.0	1	1	1	2	2	2	0	Uncharacterized	conserved	protein
Lectin_N	PF03954.14	gi|564287975|ref|YP_008874166.1|	-	0.35	10.6	5.1	0.64	9.8	5.1	1.5	1	0	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
Fmp27_WPPW	PF10359.9	gi|564287975|ref|YP_008874166.1|	-	0.72	8.6	9.7	0.84	8.4	9.7	1.0	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Pup	PF05639.11	gi|564287975|ref|YP_008874166.1|	-	0.72	10.8	7.0	0.88	10.5	5.6	2.0	1	1	1	2	2	1	0	Pup-like	protein
Laminin_II	PF06009.12	gi|564287975|ref|YP_008874166.1|	-	0.82	9.7	10.0	3.3	7.7	9.6	1.8	1	1	1	2	2	2	0	Laminin	Domain	II
TolA_bind_tri	PF16331.5	gi|564287975|ref|YP_008874166.1|	-	1.3	9.1	14.8	2.2	8.4	8.2	2.4	1	1	1	2	2	2	0	TolA	binding	protein	trimerisation
Bap31_Bap29_C	PF18035.1	gi|564287975|ref|YP_008874166.1|	-	1.4	9.0	10.6	6.1	6.9	10.2	2.2	1	1	1	2	2	2	0	Bap31/Bap29	cytoplasmic	coiled-coil	domain
DUF2570	PF10828.8	gi|564287975|ref|YP_008874166.1|	-	1.5	8.6	7.8	1.1	9.1	6.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2570)
PRKG1_interact	PF15898.5	gi|564287975|ref|YP_008874166.1|	-	2.5	9.1	17.6	7.9	7.4	17.7	1.9	1	1	1	2	2	2	0	cGMP-dependent	protein	kinase	interacting	domain
ZapB	PF06005.12	gi|564287975|ref|YP_008874166.1|	-	2.6	8.6	23.1	1.1	9.8	14.0	2.3	1	1	1	2	2	2	0	Cell	division	protein	ZapB
CorA	PF01544.18	gi|564287975|ref|YP_008874166.1|	-	2.6	7.3	6.0	3.4	6.9	6.0	1.1	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
EOS1	PF12326.8	gi|564287975|ref|YP_008874166.1|	-	4	7.3	4.6	6.4	6.7	4.6	1.4	1	1	0	1	1	1	0	N-glycosylation	protein
Csm1_N	PF18504.1	gi|564287975|ref|YP_008874166.1|	-	4.9	7.6	15.7	8	6.9	4.7	2.3	1	1	1	2	2	2	0	Csm1	N-terminal	domain
APG6_N	PF17675.1	gi|564287975|ref|YP_008874166.1|	-	5.1	7.6	23.4	25	5.4	23.4	1.8	1	1	0	1	1	1	0	Apg6	coiled-coil	region
Presenilin	PF01080.17	gi|564287975|ref|YP_008874166.1|	-	5.4	5.7	5.7	6.1	5.5	5.7	1.1	1	0	0	1	1	1	0	Presenilin
NYD-SP28_assoc	PF14775.6	gi|564287975|ref|YP_008874166.1|	-	5.6	7.2	10.5	0.41	10.8	2.1	2.4	2	0	0	2	2	2	0	Sperm	tail	C-terminal	domain
MctB	PF11382.8	gi|564287975|ref|YP_008874166.1|	-	7.6	6.1	10.9	0.81	9.3	4.6	1.9	1	1	1	2	2	2	0	Copper	transport	outer	membrane	protein,	MctB
Macoilin	PF09726.9	gi|564287975|ref|YP_008874166.1|	-	7.7	4.9	14.1	9.4	4.7	14.1	1.0	1	0	0	1	1	1	0	Macoilin	family
Ax_dynein_light	PF10211.9	gi|564287975|ref|YP_008874166.1|	-	8.3	6.3	18.1	5.3	6.9	13.8	1.9	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
CENP-H	PF05837.12	gi|564287975|ref|YP_008874166.1|	-	9.3	6.7	18.4	1.1	9.7	9.2	2.1	1	1	1	2	2	2	0	Centromere	protein	H	(CENP-H)
Cnn_1N	PF07989.11	gi|564287975|ref|YP_008874166.1|	-	9.8	6.4	17.0	7.9	6.7	14.8	2.0	2	1	0	2	2	1	0	Centrosomin	N-terminal	motif	1
Spc24	PF08286.11	gi|564287975|ref|YP_008874166.1|	-	9.9	6.5	18.9	3.2	8.1	8.5	2.2	1	1	1	2	2	2	0	Spc24	subunit	of	Ndc80
Phage_integrase	PF00589.22	gi|564287976|ref|YP_008874167.1|	-	1.7e-06	27.9	0.0	3.5e-06	26.9	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
AAA_31	PF13614.6	gi|564287977|ref|YP_008874168.1|	-	5.7e-22	78.5	0.0	9.1e-22	77.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287977|ref|YP_008874168.1|	-	6.1e-16	58.6	0.0	1.3e-15	57.6	0.0	1.5	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|564287977|ref|YP_008874168.1|	-	4.9e-08	32.7	0.0	2.3e-06	27.2	0.0	2.1	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
ArsA_ATPase	PF02374.15	gi|564287977|ref|YP_008874168.1|	-	5e-07	29.2	0.0	1.1e-05	24.8	0.0	2.1	2	0	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.11	gi|564287977|ref|YP_008874168.1|	-	8.5e-07	28.5	0.0	0.00025	20.4	0.0	2.5	2	0	0	2	2	2	2	ATPase	MipZ
CBP_BcsQ	PF06564.12	gi|564287977|ref|YP_008874168.1|	-	2.9e-06	27.0	0.0	5.3e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|564287977|ref|YP_008874168.1|	-	0.00082	18.9	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.6	gi|564287977|ref|YP_008874168.1|	-	0.024	14.2	0.2	0.08	12.5	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
CLP1_P	PF16575.5	gi|564287977|ref|YP_008874168.1|	-	0.097	12.5	0.0	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	mRNA	cleavage	and	polyadenylation	factor	CLP1	P-loop
AAA_24	PF13479.6	gi|564287977|ref|YP_008874168.1|	-	0.12	12.0	0.1	0.54	10.0	0.0	2.1	2	2	0	2	2	2	0	AAA	domain
DUF2999	PF11212.8	gi|564287978|ref|YP_008874169.1|	-	0.13	12.5	0.0	0.53	10.6	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2999)
IclR	PF01614.18	gi|564287979|ref|YP_008874171.1|	-	2.6e-36	124.3	0.1	6.4e-36	123.0	0.1	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564287979|ref|YP_008874171.1|	-	1.6e-07	31.0	0.0	3.6e-07	29.9	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287979|ref|YP_008874171.1|	-	9.9e-07	28.2	0.0	1.9e-06	27.3	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.6	gi|564287979|ref|YP_008874171.1|	-	5.5e-05	23.1	0.0	0.00034	20.5	0.0	2.2	2	1	1	3	3	3	1	Winged	helix-turn-helix
MarR_2	PF12802.7	gi|564287979|ref|YP_008874171.1|	-	0.00022	21.1	0.0	0.00085	19.2	0.0	2.0	1	1	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564287979|ref|YP_008874171.1|	-	0.00053	19.8	0.0	0.0011	18.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|564287979|ref|YP_008874171.1|	-	0.0022	17.9	0.0	0.019	14.9	0.0	2.4	1	1	1	2	2	2	1	MarR	family
HTH_27	PF13463.6	gi|564287979|ref|YP_008874171.1|	-	0.0027	18.1	0.1	0.011	16.2	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.12	gi|564287979|ref|YP_008874171.1|	-	0.0035	17.3	0.1	0.013	15.5	0.0	2.0	2	0	0	2	2	2	1	HTH	domain
HTH_20	PF12840.7	gi|564287979|ref|YP_008874171.1|	-	0.0035	17.4	0.0	0.01	15.9	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
ANAPC2	PF08672.11	gi|564287979|ref|YP_008874171.1|	-	0.0036	17.8	0.0	0.013	16.0	0.0	2.0	2	0	0	2	2	2	1	Anaphase	promoting	complex	(APC)	subunit	2
HTH_DeoR	PF08220.12	gi|564287979|ref|YP_008874171.1|	-	0.064	13.0	0.1	0.16	11.7	0.1	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
PqqD	PF05402.12	gi|564287979|ref|YP_008874171.1|	-	0.071	13.4	0.1	5.2	7.5	0.0	2.6	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
HTH_10	PF04967.12	gi|564287979|ref|YP_008874171.1|	-	0.093	12.6	0.0	0.58	10.0	0.0	2.3	1	1	1	2	2	2	0	HTH	DNA	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|564287979|ref|YP_008874171.1|	-	0.097	12.8	0.1	0.64	10.2	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	of	insertion	element	transposase
TAF8_C	PF10406.9	gi|564287979|ref|YP_008874171.1|	-	0.11	13.1	0.7	4.3	8.0	0.2	2.7	2	0	0	2	2	2	0	Transcription	factor	TFIID	complex	subunit	8	C-term
Rrf2	PF02082.20	gi|564287979|ref|YP_008874171.1|	-	0.12	12.8	0.0	0.4	11.1	0.0	1.9	2	0	0	2	2	2	0	Transcriptional	regulator
Na_H_antiporter	PF03553.14	gi|564287980|ref|YP_008874172.1|	-	4.8e-55	186.9	45.9	1.2e-50	172.5	26.0	2.1	1	1	1	2	2	2	2	Na+/H+	antiporter	family
Reticulon	PF02453.17	gi|564287980|ref|YP_008874172.1|	-	0.12	12.3	3.9	0.32	10.9	0.0	3.0	3	0	0	3	3	3	0	Reticulon
DUF4864	PF16156.5	gi|564287981|ref|YP_008874173.1|	-	8e-10	39.3	0.0	1.3e-09	38.6	0.0	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4864)
DUF3592	PF12158.8	gi|564287983|ref|YP_008874175.1|	-	9e-26	90.7	9.6	2.8e-25	89.1	9.4	1.9	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3592)
DUF3318	PF11780.8	gi|564287983|ref|YP_008874175.1|	-	0.017	15.0	0.0	0.84	9.6	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3318)
DUF2189	PF09955.9	gi|564287983|ref|YP_008874175.1|	-	0.089	13.0	2.6	0.089	13.0	0.9	1.8	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2189)
Hydantoinase_B	PF02538.14	gi|564287984|ref|YP_008874176.1|	-	2.2e-202	673.1	2.9	2.4e-202	672.9	2.9	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Hydantoinase_A	PF01968.18	gi|564287985|ref|YP_008874177.1|	-	1.4e-98	329.7	11.2	3.3e-98	328.5	5.3	2.3	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.13	gi|564287985|ref|YP_008874177.1|	-	8.4e-51	172.2	1.9	4e-50	170.0	0.2	2.3	2	0	0	2	2	2	1	Hydantoinase/oxoprolinase	N-terminal	region
MutL	PF13941.6	gi|564287985|ref|YP_008874177.1|	-	0.0026	16.4	5.7	0.026	13.1	0.4	2.6	3	0	0	3	3	3	2	MutL	protein
FtsA	PF14450.6	gi|564287985|ref|YP_008874177.1|	-	0.45	11.0	2.8	3.2	8.2	0.3	2.8	2	1	0	2	2	2	0	Cell	division	protein	FtsA
Nramp	PF01566.18	gi|564287986|ref|YP_008874178.1|	-	2e-97	326.4	24.4	2.5e-97	326.1	24.4	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
LPD14	PF18827.1	gi|564287986|ref|YP_008874178.1|	-	0.16	12.3	2.4	37	4.6	0.1	3.7	2	2	2	4	4	4	0	Large	polyvalent	protein-associated	domain	14
RHH_1	PF01402.21	gi|564287987|ref|YP_008874179.1|	-	6e-11	41.9	1.4	9.9e-11	41.2	0.2	2.0	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.7	gi|564287987|ref|YP_008874179.1|	-	5.5e-05	23.0	0.1	0.00014	21.8	0.1	1.7	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
PSK_trans_fac	PF07704.11	gi|564287987|ref|YP_008874179.1|	-	0.003	18.3	0.5	0.015	16.0	0.2	2.0	1	1	1	2	2	2	1	Rv0623-like	transcription	factor
PUB	PF09409.10	gi|564287987|ref|YP_008874179.1|	-	0.015	15.2	0.0	0.029	14.3	0.0	1.4	1	0	0	1	1	1	0	PUB	domain
TraY	PF05509.11	gi|564287987|ref|YP_008874179.1|	-	0.027	14.5	0.3	0.1	12.7	0.1	1.9	2	0	0	2	2	2	0	TraY	domain
RHH_5	PF07878.11	gi|564287987|ref|YP_008874179.1|	-	0.074	13.0	0.1	0.18	11.7	0.1	1.7	1	0	0	1	1	1	0	CopG-like	RHH_1	or	ribbon-helix-helix	domain,	RHH_5
ELFV_dehydrog	PF00208.21	gi|564287988|ref|YP_008874180.1|	-	7.7e-72	241.9	0.1	9.9e-72	241.6	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|564287988|ref|YP_008874180.1|	-	6.6e-53	178.0	0.0	1e-52	177.4	0.0	1.3	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|564287988|ref|YP_008874180.1|	-	0.00064	19.1	0.1	0.0013	18.2	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Oxidored_nitro	PF00148.19	gi|564287988|ref|YP_008874180.1|	-	0.0016	17.3	0.0	0.0022	16.8	0.0	1.2	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
IlvN	PF07991.12	gi|564287988|ref|YP_008874180.1|	-	0.028	14.0	0.1	0.045	13.3	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AlaDh_PNT_C	PF01262.21	gi|564287988|ref|YP_008874180.1|	-	0.042	13.1	0.1	0.074	12.3	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
BAT	PF15915.5	gi|564287989|ref|YP_008874181.1|	-	7.8e-37	126.6	9.3	7.8e-37	126.6	9.3	2.8	3	0	0	3	3	3	1	GAF	and	HTH_10	associated	domain
GAF_2	PF13185.6	gi|564287989|ref|YP_008874181.1|	-	4.3e-26	91.8	5.0	6.1e-19	68.7	0.1	3.4	4	0	0	4	4	4	2	GAF	domain
HTH_10	PF04967.12	gi|564287989|ref|YP_008874181.1|	-	4.3e-18	64.8	0.0	1.4e-17	63.2	0.0	2.0	1	0	0	1	1	1	1	HTH	DNA	binding	domain
PAS_4	PF08448.10	gi|564287989|ref|YP_008874181.1|	-	2.2e-13	50.4	4.3	3.4e-09	36.9	0.7	3.7	3	0	0	3	3	3	2	PAS	fold
GAF_3	PF13492.6	gi|564287989|ref|YP_008874181.1|	-	4.8e-13	49.6	0.2	9e-05	22.8	0.0	3.5	3	0	0	3	3	3	2	GAF	domain
Response_reg	PF00072.24	gi|564287989|ref|YP_008874181.1|	-	3.5e-10	40.0	0.1	1.7e-09	37.8	0.0	2.2	2	0	0	2	2	2	1	Response	regulator	receiver	domain
GAF	PF01590.26	gi|564287989|ref|YP_008874181.1|	-	5.5e-09	36.8	1.5	0.0011	19.7	0.0	3.4	3	0	0	3	3	3	2	GAF	domain
PAS_9	PF13426.7	gi|564287989|ref|YP_008874181.1|	-	8e-09	35.7	1.7	2.7e-05	24.3	0.0	3.5	3	0	0	3	3	3	2	PAS	domain
PAS	PF00989.25	gi|564287989|ref|YP_008874181.1|	-	8.7e-06	25.7	5.6	0.047	13.7	0.1	3.7	4	0	0	4	4	4	2	PAS	fold
PAS_8	PF13188.7	gi|564287989|ref|YP_008874181.1|	-	0.062	13.3	0.4	0.9	9.6	0.1	3.1	3	0	0	3	3	3	0	PAS	domain
PAS_7	PF12860.7	gi|564287989|ref|YP_008874181.1|	-	0.36	11.0	7.3	0.56	10.4	0.0	4.2	4	2	0	4	4	4	0	PAS	fold
zf-C2HC5	PF06221.13	gi|564287990|ref|YP_008874182.1|	-	0.00027	20.8	0.2	0.0003	20.7	0.2	1.1	1	0	0	1	1	1	1	Putative	zinc	finger	motif,	C2HC5-type
DZR	PF12773.7	gi|564287990|ref|YP_008874182.1|	-	0.002	18.1	1.4	0.0022	18.0	1.4	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF1272	PF06906.11	gi|564287990|ref|YP_008874182.1|	-	0.0083	16.2	1.0	0.0093	16.0	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
Zn-ribbon_8	PF09723.10	gi|564287990|ref|YP_008874182.1|	-	0.01	15.9	3.3	0.018	15.1	3.3	1.5	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|564287990|ref|YP_008874182.1|	-	0.015	14.7	1.6	0.024	14.0	1.6	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.11	gi|564287990|ref|YP_008874182.1|	-	0.024	14.8	0.4	0.027	14.6	0.4	1.1	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
HypA	PF01155.19	gi|564287990|ref|YP_008874182.1|	-	0.069	13.2	1.0	0.071	13.1	1.0	1.1	1	0	0	1	1	1	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
RNA_pol_N	PF01194.17	gi|564287990|ref|YP_008874182.1|	-	0.11	12.8	1.0	0.16	12.3	1.0	1.4	1	1	0	1	1	1	0	RNA	polymerases	N	/	8	kDa	subunit
YhfH	PF14149.6	gi|564287990|ref|YP_008874182.1|	-	0.15	12.0	5.2	2.6	8.1	3.8	2.1	1	1	1	2	2	2	0	YhfH-like	protein
ELFV_dehydrog	PF00208.21	gi|564287991|ref|YP_008874183.1|	-	3.9e-71	239.6	0.1	4.8e-71	239.3	0.1	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.18	gi|564287991|ref|YP_008874183.1|	-	1.5e-56	189.9	0.0	2.4e-56	189.2	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.19	gi|564287991|ref|YP_008874183.1|	-	0.0065	15.9	0.0	0.011	15.1	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|564287991|ref|YP_008874183.1|	-	0.017	14.7	0.0	0.031	13.8	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
AdoHcyase_NAD	PF00670.21	gi|564287991|ref|YP_008874183.1|	-	0.13	12.4	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Gp_dh_N	PF00044.24	gi|564287991|ref|YP_008874183.1|	-	0.18	12.2	0.0	0.51	10.7	0.0	1.9	2	0	0	2	2	2	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
PAS_4	PF08448.10	gi|564287992|ref|YP_008874184.1|	-	1.6e-52	176.4	15.5	4e-14	52.8	0.0	7.0	5	3	0	5	5	5	5	PAS	fold
PAS	PF00989.25	gi|564287992|ref|YP_008874184.1|	-	9.3e-37	125.5	4.5	5.4e-17	61.8	0.0	5.6	5	1	0	5	5	5	4	PAS	fold
PAS_9	PF13426.7	gi|564287992|ref|YP_008874184.1|	-	2.5e-31	108.0	3.7	2.1e-12	47.2	0.0	6.0	6	0	0	6	6	6	4	PAS	domain
PAS_8	PF13188.7	gi|564287992|ref|YP_008874184.1|	-	4e-20	71.4	1.7	1.6e-06	28.0	0.0	5.8	6	0	0	6	6	5	4	PAS	domain
PAS_3	PF08447.12	gi|564287992|ref|YP_008874184.1|	-	1.2e-19	70.3	0.4	2.3e-09	37.4	0.1	3.8	4	0	0	4	4	4	2	PAS	fold
GAF_2	PF13185.6	gi|564287992|ref|YP_008874184.1|	-	1.1e-17	64.6	12.2	7.2e-10	39.3	0.8	5.3	6	0	0	6	6	6	2	GAF	domain
GAF_3	PF13492.6	gi|564287992|ref|YP_008874184.1|	-	3.5e-17	63.0	0.1	1.5e-09	38.2	0.0	4.3	4	0	0	4	4	4	2	GAF	domain
Response_reg	PF00072.24	gi|564287992|ref|YP_008874184.1|	-	9.1e-15	54.8	0.2	3.1e-14	53.1	0.0	1.9	2	0	0	2	2	2	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|564287992|ref|YP_008874184.1|	-	1.1e-14	54.9	0.0	2.5e-14	53.7	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|564287992|ref|YP_008874184.1|	-	5.3e-13	48.8	0.4	5.3e-13	48.8	0.4	3.9	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|564287992|ref|YP_008874184.1|	-	6.7e-09	36.5	0.1	9.7e-07	29.5	0.0	3.6	3	0	0	3	3	3	1	GAF	domain
PAS_10	PF13596.6	gi|564287992|ref|YP_008874184.1|	-	0.066	13.8	0.0	1.4	9.6	0.0	3.1	3	0	0	3	3	3	0	PAS	domain
MCU	PF04678.13	gi|564287992|ref|YP_008874184.1|	-	0.67	10.0	2.3	1.3	9.0	0.4	2.6	2	1	1	3	3	3	0	Mitochondrial	calcium	uniporter
Response_reg	PF00072.24	gi|564287993|ref|YP_008874185.1|	-	3.7e-23	81.8	0.0	9.4e-23	80.5	0.0	1.7	1	0	0	1	1	1	1	Response	regulator	receiver	domain
HATPase_c	PF02518.26	gi|564287993|ref|YP_008874185.1|	-	1.8e-18	67.1	1.4	4e-18	65.9	0.1	2.2	3	0	0	3	3	3	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
GAF_2	PF13185.6	gi|564287993|ref|YP_008874185.1|	-	3.4e-18	66.3	1.7	1.3e-17	64.4	0.1	2.7	3	1	0	3	3	3	1	GAF	domain
PAS_4	PF08448.10	gi|564287993|ref|YP_008874185.1|	-	4.2e-16	59.2	0.0	8.8e-16	58.1	0.0	1.6	1	0	0	1	1	1	1	PAS	fold
HisKA	PF00512.25	gi|564287993|ref|YP_008874185.1|	-	2.8e-14	52.9	1.2	2.8e-14	52.9	1.2	3.4	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_9	PF13426.7	gi|564287993|ref|YP_008874185.1|	-	1.1e-10	41.7	0.0	3.1e-10	40.2	0.0	1.8	1	0	0	1	1	1	1	PAS	domain
PAS	PF00989.25	gi|564287993|ref|YP_008874185.1|	-	3.3e-10	40.0	0.0	1e-09	38.4	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
GAF	PF01590.26	gi|564287993|ref|YP_008874185.1|	-	1.5e-09	38.6	0.0	2.1e-08	34.8	0.0	2.6	2	0	0	2	2	2	1	GAF	domain
GAF_3	PF13492.6	gi|564287993|ref|YP_008874185.1|	-	1.5e-07	31.8	0.0	5.6e-07	30.0	0.0	2.0	2	0	0	2	2	2	1	GAF	domain
PAS_3	PF08447.12	gi|564287993|ref|YP_008874185.1|	-	1.5e-06	28.4	0.0	4.8e-06	26.8	0.0	1.9	1	0	0	1	1	1	1	PAS	fold
PAS_8	PF13188.7	gi|564287993|ref|YP_008874185.1|	-	6.7e-05	22.8	0.0	0.00028	20.8	0.0	2.1	1	0	0	1	1	1	1	PAS	domain
HATPase_c_2	PF13581.6	gi|564287993|ref|YP_008874185.1|	-	0.023	14.6	0.1	0.023	14.6	0.1	2.7	3	0	0	3	3	3	0	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|564287993|ref|YP_008874185.1|	-	0.026	14.4	0.0	0.062	13.1	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TBCA	PF02970.16	gi|564287993|ref|YP_008874185.1|	-	0.094	13.1	0.3	0.33	11.3	0.3	1.9	1	0	0	1	1	1	0	Tubulin	binding	cofactor	A
Abhydrolase_6	PF12697.7	gi|564287994|ref|YP_008874186.1|	-	7.8e-20	72.4	4.1	9.4e-20	72.2	4.1	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|564287994|ref|YP_008874186.1|	-	1.3e-09	38.1	0.0	2.7e-09	37.0	0.0	1.5	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|564287994|ref|YP_008874186.1|	-	0.0013	18.0	0.0	0.0018	17.6	0.0	1.1	1	0	0	1	1	1	1	Serine	aminopeptidase,	S33
Abhydrolase_5	PF12695.7	gi|564287994|ref|YP_008874186.1|	-	0.0045	16.8	0.0	0.0087	15.8	0.0	1.5	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
PGAP1	PF07819.13	gi|564287994|ref|YP_008874186.1|	-	0.15	11.7	0.0	0.21	11.3	0.0	1.2	1	0	0	1	1	1	0	PGAP1-like	protein
Peripla_BP_2	PF01497.18	gi|564288292|ref|YP_008874187.1|	-	3.1e-12	46.6	0.0	5.4e-12	45.8	0.0	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
IMPDH	PF00478.25	gi|564287995|ref|YP_008874188.1|	-	7.5e-118	393.5	6.9	8.8e-118	393.3	6.9	1.0	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
NMO	PF03060.15	gi|564287995|ref|YP_008874188.1|	-	8.1e-09	35.3	13.2	0.00037	20.0	0.1	2.4	1	1	0	2	2	2	2	Nitronate	monooxygenase
FMN_dh	PF01070.18	gi|564287995|ref|YP_008874188.1|	-	8.1e-07	28.4	10.1	1.7e-06	27.3	10.1	1.6	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
His_biosynth	PF00977.21	gi|564287995|ref|YP_008874188.1|	-	5.8e-06	25.9	1.8	0.00019	21.0	0.1	2.3	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
Glu_synthase	PF01645.17	gi|564287995|ref|YP_008874188.1|	-	0.0017	17.6	3.9	0.0017	17.6	3.9	2.7	3	0	0	3	3	3	1	Conserved	region	in	glutamate	synthase
TMP-TENI	PF02581.17	gi|564287995|ref|YP_008874188.1|	-	0.009	15.4	5.7	0.017	14.5	5.2	1.7	1	1	1	2	2	2	1	Thiamine	monophosphate	synthase
DHO_dh	PF01180.21	gi|564287995|ref|YP_008874188.1|	-	0.012	14.9	0.7	0.012	14.9	0.7	1.7	3	0	0	3	3	3	0	Dihydroorotate	dehydrogenase
Aldolase	PF01081.19	gi|564287995|ref|YP_008874188.1|	-	0.066	12.6	3.1	0.16	11.4	1.1	2.2	1	1	1	2	2	2	0	KDPG	and	KHG	aldolase
DUF934	PF06073.12	gi|564287996|ref|YP_008874189.1|	-	0.015	15.2	0.0	0.017	15.0	0.0	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF934)
DUF969	PF06149.12	gi|564287996|ref|YP_008874189.1|	-	0.026	14.0	0.1	0.028	13.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF969)
Molybdopterin	PF00384.22	gi|564287997|ref|YP_008874190.1|	-	1.6e-80	271.2	0.0	1.9e-80	270.9	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564287997|ref|YP_008874190.1|	-	3.6e-32	110.7	0.0	7.6e-32	109.6	0.0	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.16	gi|564287997|ref|YP_008874190.1|	-	1.1e-05	25.3	4.8	1.4e-05	25.0	3.1	2.0	2	1	0	2	2	2	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TPP_enzyme_M	PF00205.22	gi|564287997|ref|YP_008874190.1|	-	0.028	14.2	0.3	5	6.9	0.0	2.9	3	0	0	3	3	3	0	Thiamine	pyrophosphate	enzyme,	central	domain
zf-ribbon_3	PF13248.6	gi|564287997|ref|YP_008874190.1|	-	0.043	13.2	0.3	0.15	11.6	0.2	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
NosD	PF05048.13	gi|564287998|ref|YP_008874191.1|	-	3.3e-23	82.2	4.7	1.3e-22	80.3	1.3	2.1	1	1	1	2	2	2	1	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.6	gi|564287998|ref|YP_008874191.1|	-	1.4e-14	54.3	12.7	7.7e-11	42.1	2.6	3.0	1	1	1	2	2	2	2	Right	handed	beta	helix	region
NosL	PF05573.12	gi|564287998|ref|YP_008874191.1|	-	1.7e-13	51.1	0.0	3e-13	50.2	0.0	1.4	1	0	0	1	1	1	1	NosL
DUF1565	PF07602.11	gi|564287998|ref|YP_008874191.1|	-	0.00043	19.7	13.6	0.076	12.3	13.6	2.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1565)
ABC_tran	PF00005.27	gi|564287999|ref|YP_008874192.1|	-	6.7e-28	97.9	0.0	9e-28	97.5	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564287999|ref|YP_008874192.1|	-	1.6e-17	64.3	0.1	4.4e-09	36.6	0.0	2.1	1	1	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564287999|ref|YP_008874192.1|	-	2.5e-05	23.8	0.0	0.046	13.1	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564287999|ref|YP_008874192.1|	-	7.7e-05	22.6	0.0	0.0029	17.4	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.6	gi|564287999|ref|YP_008874192.1|	-	0.00053	19.7	0.0	0.0011	18.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|564287999|ref|YP_008874192.1|	-	0.00094	19.7	0.0	0.0013	19.3	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564287999|ref|YP_008874192.1|	-	0.012	15.5	0.1	0.026	14.4	0.1	1.5	2	0	0	2	2	2	0	RsgA	GTPase
AAA_33	PF13671.6	gi|564287999|ref|YP_008874192.1|	-	0.013	15.6	0.0	0.019	15.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.6	gi|564287999|ref|YP_008874192.1|	-	0.015	15.7	0.0	0.026	14.9	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
Adeno_IVa2	PF02456.15	gi|564287999|ref|YP_008874192.1|	-	0.033	13.0	0.0	0.045	12.5	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_13	PF13166.6	gi|564287999|ref|YP_008874192.1|	-	0.046	12.4	0.0	2.7	6.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.23	gi|564287999|ref|YP_008874192.1|	-	0.19	11.8	0.1	0.37	10.9	0.1	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
cobW	PF02492.19	gi|564287999|ref|YP_008874192.1|	-	0.23	11.0	0.3	0.42	10.2	0.3	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC2_membrane_2	PF12679.7	gi|564288000|ref|YP_008874193.1|	-	2.5e-07	30.3	21.1	1.2e-05	24.8	21.1	2.2	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.24	gi|564288000|ref|YP_008874193.1|	-	0.0026	17.2	7.2	0.0026	17.2	7.2	2.2	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|564288000|ref|YP_008874193.1|	-	0.18	10.9	16.2	0.038	13.1	12.7	1.6	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
HrcA_DNA-bdg	PF03444.15	gi|564288000|ref|YP_008874193.1|	-	0.2	11.3	0.2	0.43	10.3	0.2	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HTH_20	PF12840.7	gi|564288001|ref|YP_008874194.1|	-	4.4e-15	55.5	3.2	4.4e-09	36.3	1.0	2.6	2	0	0	2	2	2	2	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288001|ref|YP_008874194.1|	-	9.4e-13	47.5	0.0	2.7e-08	33.3	0.0	2.4	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564288001|ref|YP_008874194.1|	-	1.3e-11	44.2	0.1	5.9e-07	29.2	0.1	2.3	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|564288001|ref|YP_008874194.1|	-	2.4e-08	33.7	4.9	5.7e-06	26.1	0.7	3.0	3	2	0	3	3	3	2	MarR	family
TrmB	PF01978.19	gi|564288001|ref|YP_008874194.1|	-	2.8e-08	33.5	0.0	4.6e-05	23.2	0.0	2.2	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|564288001|ref|YP_008874194.1|	-	2.6e-06	27.3	0.1	2.8e-05	24.0	0.1	2.1	2	0	0	2	2	2	1	HTH	domain
Rrf2	PF02082.20	gi|564288001|ref|YP_008874194.1|	-	6.3e-05	23.2	0.1	0.0051	17.1	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_10	PF04967.12	gi|564288001|ref|YP_008874194.1|	-	6.6e-05	22.6	0.1	0.22	11.4	0.0	2.7	2	0	0	2	2	2	2	HTH	DNA	binding	domain
MarR	PF01047.22	gi|564288001|ref|YP_008874194.1|	-	6.9e-05	22.7	0.0	0.00038	20.3	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564288001|ref|YP_008874194.1|	-	0.00011	22.1	0.4	0.00023	21.1	0.2	1.8	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288001|ref|YP_008874194.1|	-	0.0002	21.1	1.2	0.0029	17.4	0.8	2.3	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_34	PF13601.6	gi|564288001|ref|YP_008874194.1|	-	0.00022	21.3	0.0	0.16	12.2	0.0	2.2	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|564288001|ref|YP_008874194.1|	-	0.00066	19.8	0.0	0.18	12.0	0.0	2.4	2	1	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
RP-C	PF03428.13	gi|564288001|ref|YP_008874194.1|	-	0.0055	16.4	0.0	0.21	11.3	0.0	2.4	2	0	0	2	2	2	1	Replication	protein	C	N-terminal	domain
HTH_CodY	PF08222.11	gi|564288001|ref|YP_008874194.1|	-	0.0074	15.8	0.0	0.029	13.9	0.0	1.9	2	0	0	2	2	2	1	CodY	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288001|ref|YP_008874194.1|	-	0.0092	15.7	0.0	0.036	13.8	0.0	1.9	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
FaeA	PF04703.12	gi|564288001|ref|YP_008874194.1|	-	0.01	16.2	0.1	1.9	8.9	0.0	2.2	2	0	0	2	2	2	1	FaeA-like	protein
AbiEi_4	PF13338.6	gi|564288001|ref|YP_008874194.1|	-	0.014	15.5	0.2	9	6.5	0.1	2.6	2	0	0	2	2	2	0	Transcriptional	regulator,	AbiEi	antitoxin
Phage_CI_repr	PF07022.13	gi|564288001|ref|YP_008874194.1|	-	0.02	14.9	0.0	0.12	12.5	0.0	2.0	2	0	0	2	2	2	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288001|ref|YP_008874194.1|	-	0.054	14.0	0.5	3.6	8.1	0.2	2.3	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
DprA_WH	PF17782.1	gi|564288001|ref|YP_008874194.1|	-	0.062	13.4	7.2	0.44	10.7	1.0	3.4	3	1	0	3	3	3	0	DprA	winged	helix	domain
Glyco_transf_56	PF07429.11	gi|564288001|ref|YP_008874194.1|	-	0.065	12.3	0.0	0.078	12.1	0.0	1.0	1	0	0	1	1	1	0	4-alpha-L-fucosyltransferase	glycosyl	transferase	group	56
RPA_C	PF08784.11	gi|564288001|ref|YP_008874194.1|	-	0.086	13.5	0.0	6.5	7.5	0.0	2.2	1	1	1	2	2	2	0	Replication	protein	A	C	terminal
NosL	PF05573.12	gi|564288002|ref|YP_008874195.1|	-	2e-43	147.9	0.1	2.4e-43	147.6	0.1	1.1	1	0	0	1	1	1	1	NosL
RRM_1	PF00076.22	gi|564288002|ref|YP_008874195.1|	-	0.0077	16.0	0.0	0.012	15.4	0.0	1.3	1	0	0	1	1	1	1	RNA	recognition	motif.	(a.k.a.	RRM,	RBD,	or	RNP	domain)
VATC	PF18716.1	gi|564288002|ref|YP_008874195.1|	-	0.0091	15.8	3.5	0.088	12.7	1.4	2.3	2	0	0	2	2	2	1	Vms1-associating	treble	clef	domain
LysE	PF01810.18	gi|564288003|ref|YP_008874196.1|	-	0.096	12.1	4.9	0.12	11.8	4.9	1.2	1	0	0	1	1	1	0	LysE	type	translocator
7TMR-DISM_7TM	PF07695.11	gi|564288003|ref|YP_008874196.1|	-	0.36	10.7	7.2	0.4	10.5	7.2	1.0	1	0	0	1	1	1	0	7TM	diverse	intracellular	signalling
MARVEL	PF01284.23	gi|564288003|ref|YP_008874196.1|	-	1.5	8.9	6.2	6.1	6.9	6.2	1.8	1	1	0	1	1	1	0	Membrane-associating	domain
DUF1772	PF08592.11	gi|564288003|ref|YP_008874196.1|	-	2.6	8.4	6.8	5.2	7.4	6.8	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
Usp	PF00582.26	gi|564288004|ref|YP_008874197.1|	-	3.8e-30	105.2	2.2	4.2e-30	105.1	2.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|564288004|ref|YP_008874197.1|	-	0.00046	20.2	0.0	0.00057	19.9	0.0	1.1	1	0	0	1	1	1	1	DNA	photolyase
Pyridox_ox_2	PF12900.7	gi|564288005|ref|YP_008874198.1|	-	1.3e-17	64.2	0.0	1.4e-17	64.0	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288005|ref|YP_008874198.1|	-	0.012	15.8	0.0	0.016	15.4	0.0	1.2	1	0	0	1	1	1	0	Pyridoxamine	5'-phosphate	oxidase
DUF2267	PF10025.9	gi|564288006|ref|YP_008874199.1|	-	3e-36	124.4	0.7	4.1e-36	123.9	0.7	1.1	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2267)
Usp	PF00582.26	gi|564288007|ref|YP_008874200.1|	-	6.4e-67	224.4	4.4	4.2e-33	114.8	0.9	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
FR47	PF08445.10	gi|564288007|ref|YP_008874200.1|	-	0.0012	18.7	0.2	0.61	10.1	0.0	2.6	2	0	0	2	2	2	2	FR47-like	protein
AP_endonuc_2	PF01261.24	gi|564288007|ref|YP_008874200.1|	-	0.0079	15.7	3.1	0.24	10.8	0.1	2.5	1	1	1	2	2	2	2	Xylose	isomerase-like	TIM	barrel
Pyridox_ox_2	PF12900.7	gi|564288008|ref|YP_008874201.1|	-	1.3e-17	64.1	0.0	1.5e-17	63.9	0.0	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288008|ref|YP_008874201.1|	-	0.0058	16.8	0.0	0.0082	16.3	0.0	1.3	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
E1-E2_ATPase	PF00122.20	gi|564288009|ref|YP_008874202.1|	-	2.8e-56	189.9	2.7	2.8e-56	189.9	2.7	2.6	2	0	0	2	2	2	1	E1-E2	ATPase
Cation_ATPase_C	PF00689.21	gi|564288009|ref|YP_008874202.1|	-	1.4e-38	132.4	1.1	1.4e-38	132.4	1.1	1.9	2	0	0	2	2	2	1	Cation	transporting	ATPase,	C-terminus
Hydrolase	PF00702.26	gi|564288009|ref|YP_008874202.1|	-	4.1e-28	99.1	3.9	8.7e-28	98.0	3.9	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase	PF13246.6	gi|564288009|ref|YP_008874202.1|	-	4.8e-21	74.6	0.0	3.2e-20	72.0	0.0	2.1	2	0	0	2	2	2	1	Cation	transport	ATPase	(P-type)
Cation_ATPase_N	PF00690.26	gi|564288009|ref|YP_008874202.1|	-	1.5e-13	50.2	0.0	3e-13	49.2	0.0	1.5	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.12	gi|564288009|ref|YP_008874202.1|	-	1.1e-05	25.3	0.8	9.2e-05	22.3	0.6	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|564288009|ref|YP_008874202.1|	-	0.0007	20.0	0.3	0.0014	19.1	0.3	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Pyr_redox_2	PF07992.14	gi|564288010|ref|YP_008874203.1|	-	4e-58	197.0	1.8	5.1e-58	196.6	1.8	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564288010|ref|YP_008874203.1|	-	1e-26	93.3	1.9	6.5e-21	74.7	0.4	3.4	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.22	gi|564288010|ref|YP_008874203.1|	-	6.3e-13	48.9	0.0	3.4e-12	46.6	0.0	2.2	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.6	gi|564288010|ref|YP_008874203.1|	-	1.6e-08	34.2	0.0	0.0035	16.6	0.0	2.4	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|564288010|ref|YP_008874203.1|	-	1.1e-06	28.8	0.9	0.012	15.9	0.0	3.5	4	0	0	4	4	4	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|564288010|ref|YP_008874203.1|	-	6.6e-06	25.5	10.8	0.22	10.6	0.4	4.1	1	1	3	4	4	4	3	FAD	binding	domain
HI0933_like	PF03486.14	gi|564288010|ref|YP_008874203.1|	-	2.3e-05	23.3	0.1	0.17	10.6	0.0	3.6	3	1	1	4	4	4	2	HI0933-like	protein
Amino_oxidase	PF01593.24	gi|564288010|ref|YP_008874203.1|	-	0.00015	21.2	0.2	1.8	7.8	0.0	3.0	3	0	0	3	3	3	2	Flavin	containing	amine	oxidoreductase
Thi4	PF01946.17	gi|564288010|ref|YP_008874203.1|	-	0.025	13.8	0.1	0.35	10.1	0.0	2.6	3	0	0	3	3	3	0	Thi4	family
Lycopene_cycl	PF05834.12	gi|564288010|ref|YP_008874203.1|	-	0.028	13.5	0.3	0.48	9.4	0.0	2.5	3	0	0	3	3	3	0	Lycopene	cyclase	protein
UDPG_MGDP_dh_N	PF03721.14	gi|564288010|ref|YP_008874203.1|	-	0.086	12.4	0.1	6.1	6.4	0.0	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.18	gi|564288010|ref|YP_008874203.1|	-	0.099	12.5	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TauE	PF01925.19	gi|564288011|ref|YP_008874204.1|	-	7.1e-18	65.1	37.9	8.9e-18	64.8	37.9	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DrsE	PF02635.15	gi|564288012|ref|YP_008874205.1|	-	2.9e-09	37.3	0.0	3.3e-09	37.1	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Thioredoxin	PF00085.20	gi|564288013|ref|YP_008874206.1|	-	3.9e-27	94.2	0.0	4.4e-27	94.1	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288013|ref|YP_008874206.1|	-	8.8e-11	42.2	0.1	3.9e-09	36.9	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
TraF	PF13728.6	gi|564288013|ref|YP_008874206.1|	-	8e-07	29.1	0.0	9.8e-07	28.8	0.0	1.1	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_3	PF13192.6	gi|564288013|ref|YP_008874206.1|	-	1.1e-05	25.4	0.0	1.7e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
DSBA	PF01323.20	gi|564288013|ref|YP_008874206.1|	-	2.3e-05	24.2	0.3	3.8e-05	23.5	0.1	1.5	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_8	PF13905.6	gi|564288013|ref|YP_008874206.1|	-	7.1e-05	23.1	0.0	0.44	10.9	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
Thioredoxin_9	PF14595.6	gi|564288013|ref|YP_008874206.1|	-	9.4e-05	22.2	0.0	0.00012	21.9	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_7	PF13899.6	gi|564288013|ref|YP_008874206.1|	-	0.0011	19.2	0.0	0.0023	18.0	0.0	1.6	1	1	0	1	1	1	1	Thioredoxin-like
HyaE	PF07449.11	gi|564288013|ref|YP_008874206.1|	-	0.0018	18.2	0.0	0.0031	17.5	0.0	1.4	1	0	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
OST3_OST6	PF04756.13	gi|564288013|ref|YP_008874206.1|	-	0.0027	17.1	0.0	0.0033	16.8	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
DUF836	PF05768.14	gi|564288013|ref|YP_008874206.1|	-	0.0032	17.8	0.0	0.0043	17.4	0.0	1.3	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin_5	PF13743.6	gi|564288013|ref|YP_008874206.1|	-	0.0056	16.4	0.0	0.013	15.2	0.0	1.6	1	1	1	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.24	gi|564288013|ref|YP_008874206.1|	-	0.0069	16.6	0.0	0.012	15.9	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin
Redoxin	PF08534.10	gi|564288013|ref|YP_008874206.1|	-	0.012	15.3	0.1	1.3	8.7	0.1	2.0	1	1	1	2	2	2	0	Redoxin
AhpC-TSA	PF00578.21	gi|564288013|ref|YP_008874206.1|	-	0.013	15.4	0.0	0.55	10.2	0.0	2.0	1	1	1	2	2	2	0	AhpC/TSA	family
Thioredoxin_4	PF13462.6	gi|564288013|ref|YP_008874206.1|	-	0.065	13.4	0.0	0.14	12.3	0.0	1.5	1	1	1	2	2	2	0	Thioredoxin
TrbC_Ftype	PF09673.10	gi|564288013|ref|YP_008874206.1|	-	0.17	12.0	0.0	0.23	11.5	0.0	1.2	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
TrmB	PF01978.19	gi|564288014|ref|YP_008874207.1|	-	3.8e-18	65.1	0.0	5.2e-18	64.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|564288014|ref|YP_008874207.1|	-	1.5e-07	31.1	0.1	3e-07	30.1	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.22	gi|564288014|ref|YP_008874207.1|	-	1.8e-06	27.8	0.0	3.7e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564288014|ref|YP_008874207.1|	-	4.6e-06	26.5	0.0	8e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.16	gi|564288014|ref|YP_008874207.1|	-	8.6e-05	22.9	0.0	0.00011	22.6	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
MarR_2	PF12802.7	gi|564288014|ref|YP_008874207.1|	-	0.00012	21.9	0.0	0.00038	20.3	0.1	1.7	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.7	gi|564288014|ref|YP_008874207.1|	-	0.0003	20.8	0.2	0.00067	19.7	0.1	1.6	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288014|ref|YP_008874207.1|	-	0.0009	18.8	0.0	0.0016	18.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
RuvB_C	PF05491.13	gi|564288014|ref|YP_008874207.1|	-	0.0011	18.8	0.0	0.0022	17.9	0.0	1.4	1	0	0	1	1	1	1	RuvB	C-terminal	winged	helix	domain
UMPH-1	PF05822.12	gi|564288014|ref|YP_008874207.1|	-	0.0028	17.2	0.1	0.0046	16.5	0.1	1.3	1	1	0	1	1	1	1	Pyrimidine	5'-nucleotidase	(UMPH-1)
HTH_29	PF13551.6	gi|564288014|ref|YP_008874207.1|	-	0.016	15.2	0.0	0.03	14.3	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn	helix
GntR	PF00392.21	gi|564288014|ref|YP_008874207.1|	-	0.016	14.8	0.1	0.037	13.7	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.6	gi|564288014|ref|YP_008874207.1|	-	0.018	15.1	0.0	0.041	14.0	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.6	gi|564288014|ref|YP_008874207.1|	-	0.03	14.0	0.1	0.11	12.2	0.0	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_Crp_2	PF13545.6	gi|564288014|ref|YP_008874207.1|	-	0.037	14.0	0.1	0.073	13.1	0.1	1.5	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
SMC_ScpB	PF04079.16	gi|564288014|ref|YP_008874207.1|	-	0.047	13.3	0.4	1.2	8.7	0.0	2.4	1	1	1	2	2	2	0	Segregation	and	condensation	complex	subunit	ScpB
HTH_23	PF13384.6	gi|564288014|ref|YP_008874207.1|	-	0.047	13.5	0.0	0.12	12.2	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
Rrf2	PF02082.20	gi|564288014|ref|YP_008874207.1|	-	0.078	13.3	0.0	0.17	12.3	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
Dimerisation	PF08100.11	gi|564288014|ref|YP_008874207.1|	-	0.085	12.9	0.0	0.24	11.5	0.0	1.7	2	0	0	2	2	2	0	Dimerisation	domain
HTH_27	PF13463.6	gi|564288014|ref|YP_008874207.1|	-	0.15	12.6	0.0	0.24	11.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sulf_transp	PF04143.14	gi|564288015|ref|YP_008874208.1|	-	1e-07	31.8	9.0	1e-07	31.8	9.0	2.1	1	1	1	2	2	2	2	Sulphur	transport
Sulf_transp	PF04143.14	gi|564288016|ref|YP_008874209.1|	-	7.3e-14	52.0	11.9	1.1e-13	51.5	11.9	1.2	1	0	0	1	1	1	1	Sulphur	transport
Trp_oprn_chp	PF09534.10	gi|564288016|ref|YP_008874209.1|	-	0.026	14.3	0.7	0.026	14.3	0.7	1.9	2	1	0	2	2	2	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF4282	PF14110.6	gi|564288016|ref|YP_008874209.1|	-	1.8	9.3	8.0	0.63	10.8	3.3	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4282)
Lactamase_B	PF00753.27	gi|564288017|ref|YP_008874210.1|	-	1.3e-12	48.1	4.5	2.4e-12	47.3	4.5	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|564288017|ref|YP_008874210.1|	-	3.8e-10	40.2	0.0	6.8e-10	39.4	0.0	1.4	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|564288017|ref|YP_008874210.1|	-	0.00066	19.3	0.1	0.0013	18.3	0.1	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
TusA	PF01206.17	gi|564288018|ref|YP_008874211.1|	-	1.4e-21	76.1	0.0	1.6e-21	75.9	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|564288018|ref|YP_008874211.1|	-	0.029	14.2	0.1	0.057	13.3	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
DrsE_2	PF13686.6	gi|564288019|ref|YP_008874212.1|	-	7.2e-54	181.9	0.7	8.7e-54	181.6	0.7	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|564288019|ref|YP_008874212.1|	-	4.7e-07	30.2	0.0	2.1e-06	28.1	0.0	1.9	1	1	0	1	1	1	1	DsrE/DsrF-like	family
aGPT-Pplase1	PF18723.1	gi|564288019|ref|YP_008874212.1|	-	0.04	13.3	0.0	0.053	13.0	0.0	1.2	1	0	0	1	1	1	0	alpha-glutamyl/putrescinyl	thymine	pyrophosphorylase	clade	1
DUF1641	PF07849.11	gi|564288020|ref|YP_008874213.1|	-	6.4e-16	58.0	0.3	1.5e-15	56.8	0.3	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Pyr_redox_2	PF07992.14	gi|564288021|ref|YP_008874214.1|	-	2.1e-22	79.7	0.0	1.1e-21	77.4	0.0	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.6	gi|564288021|ref|YP_008874214.1|	-	0.002	18.1	0.2	0.24	11.4	0.0	2.6	3	0	0	3	3	3	1	FAD-NAD(P)-binding
Pribosyltran	PF00156.27	gi|564288021|ref|YP_008874214.1|	-	0.0076	15.8	0.0	0.02	14.4	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Pyr_redox	PF00070.27	gi|564288021|ref|YP_008874214.1|	-	0.0095	16.5	0.1	3.9	8.1	0.1	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
TusA	PF01206.17	gi|564288022|ref|YP_008874215.1|	-	9.7e-18	63.8	0.0	1.1e-17	63.6	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DSHCT	PF08148.12	gi|564288022|ref|YP_008874215.1|	-	0.017	14.8	0.0	0.02	14.5	0.0	1.1	1	0	0	1	1	1	0	DSHCT	(NUC185)	domain
Methyltransf_31	PF13847.6	gi|564288023|ref|YP_008874216.1|	-	2.7e-12	46.7	0.0	3.2e-12	46.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288023|ref|YP_008874216.1|	-	7e-12	45.9	0.0	9.9e-12	45.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288023|ref|YP_008874216.1|	-	2e-11	44.4	0.0	2.7e-11	43.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288023|ref|YP_008874216.1|	-	6.8e-09	35.4	0.0	8.1e-09	35.2	0.0	1.0	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|564288023|ref|YP_008874216.1|	-	8.1e-08	32.9	0.0	1e-07	32.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.16	gi|564288023|ref|YP_008874216.1|	-	7.5e-07	29.1	0.0	9.7e-07	28.7	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_23	PF13489.6	gi|564288023|ref|YP_008874216.1|	-	1.5e-05	24.9	0.0	1.9e-05	24.6	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288023|ref|YP_008874216.1|	-	1.7e-05	24.4	0.0	2.6e-05	23.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.13	gi|564288023|ref|YP_008874216.1|	-	0.00017	21.1	0.0	0.00022	20.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.19	gi|564288023|ref|YP_008874216.1|	-	0.00017	21.4	0.0	0.00021	21.1	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Fibrillarin	PF01269.17	gi|564288023|ref|YP_008874216.1|	-	0.00042	19.5	0.0	0.0018	17.4	0.0	1.8	2	0	0	2	2	2	1	Fibrillarin
DUF938	PF06080.12	gi|564288023|ref|YP_008874216.1|	-	0.0014	18.4	0.0	0.0026	17.6	0.0	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF938)
Methyltransf_4	PF02390.17	gi|564288023|ref|YP_008874216.1|	-	0.0036	16.8	0.0	0.005	16.3	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_2	PF00891.18	gi|564288023|ref|YP_008874216.1|	-	0.054	12.8	0.0	0.069	12.4	0.0	1.1	1	0	0	1	1	1	0	O-methyltransferase	domain
Methyltransf_32	PF13679.6	gi|564288023|ref|YP_008874216.1|	-	0.078	13.0	0.0	0.094	12.7	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.7	gi|564288023|ref|YP_008874216.1|	-	0.081	12.9	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_8	PF05148.15	gi|564288023|ref|YP_008874216.1|	-	0.088	12.6	0.0	0.45	10.3	0.0	1.8	1	1	0	1	1	1	0	Hypothetical	methyltransferase
CMAS	PF02353.20	gi|564288023|ref|YP_008874216.1|	-	0.1	11.9	0.0	0.14	11.4	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
DUF2892	PF11127.8	gi|564288024|ref|YP_008874217.1|	-	1.3e-16	60.3	7.7	1.6e-16	60.0	7.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2892)
Chlorosome_CsmC	PF11098.8	gi|564288024|ref|YP_008874217.1|	-	0.014	15.4	2.8	0.015	15.3	2.8	1.0	1	0	0	1	1	1	0	Chlorosome	envelope	protein	C
MSP1b	PF03429.13	gi|564288024|ref|YP_008874217.1|	-	0.34	8.9	1.0	0.37	8.8	1.0	1.0	1	0	0	1	1	1	0	Major	surface	protein	1B
Peptidase_M20	PF01546.28	gi|564288025|ref|YP_008874218.1|	-	3.3e-40	138.0	0.2	5e-40	137.4	0.2	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|564288025|ref|YP_008874218.1|	-	2.3e-18	66.1	0.0	4.4e-18	65.2	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|564288025|ref|YP_008874218.1|	-	5.8e-10	39.2	0.1	1.1e-07	31.8	0.1	2.1	2	0	0	2	2	2	2	Peptidase	family	M28
Peptidase_M42	PF05343.14	gi|564288025|ref|YP_008874218.1|	-	0.005	15.9	0.1	2.8	6.9	0.0	2.3	2	0	0	2	2	2	2	M42	glutamyl	aminopeptidase
Thioredoxin	PF00085.20	gi|564288026|ref|YP_008874219.1|	-	2.1e-27	95.1	0.0	2.7e-27	94.8	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288026|ref|YP_008874219.1|	-	5.7e-12	46.1	0.1	1.4e-10	41.6	0.1	2.1	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|564288026|ref|YP_008874219.1|	-	4.1e-06	26.7	0.0	6.3e-06	26.1	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin	domain
Thioredoxin_7	PF13899.6	gi|564288026|ref|YP_008874219.1|	-	4.2e-05	23.6	0.0	8.3e-05	22.7	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin-like
TraF	PF13728.6	gi|564288026|ref|YP_008874219.1|	-	4.9e-05	23.3	0.0	6.3e-05	22.9	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_8	PF13905.6	gi|564288026|ref|YP_008874219.1|	-	6e-05	23.3	0.0	0.072	13.4	0.0	2.2	1	1	1	2	2	2	2	Thioredoxin-like
DSBA	PF01323.20	gi|564288026|ref|YP_008874219.1|	-	0.00011	22.1	0.2	0.00023	21.0	0.0	1.6	1	1	1	2	2	2	1	DSBA-like	thioredoxin	domain
Thioredoxin_9	PF14595.6	gi|564288026|ref|YP_008874219.1|	-	0.00013	21.7	0.0	0.00017	21.4	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
HyaE	PF07449.11	gi|564288026|ref|YP_008874219.1|	-	0.0002	21.3	0.1	0.00035	20.5	0.0	1.5	2	0	0	2	2	1	1	Hydrogenase-1	expression	protein	HyaE
DUF836	PF05768.14	gi|564288026|ref|YP_008874219.1|	-	0.00072	19.9	0.0	0.0011	19.3	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
OST3_OST6	PF04756.13	gi|564288026|ref|YP_008874219.1|	-	0.004	16.5	0.0	0.005	16.2	0.0	1.1	1	0	0	1	1	1	1	OST3	/	OST6	family,	transporter	family
AhpC-TSA	PF00578.21	gi|564288026|ref|YP_008874219.1|	-	0.012	15.6	0.0	0.086	12.8	0.0	2.0	1	1	0	1	1	1	0	AhpC/TSA	family
Glutaredoxin	PF00462.24	gi|564288026|ref|YP_008874219.1|	-	0.012	15.8	0.0	0.025	14.8	0.0	1.6	1	0	0	1	1	1	0	Glutaredoxin
Redoxin	PF08534.10	gi|564288026|ref|YP_008874219.1|	-	0.029	14.1	0.1	0.41	10.3	0.1	2.0	1	1	1	2	2	2	0	Redoxin
Thioredoxin_5	PF13743.6	gi|564288026|ref|YP_008874219.1|	-	0.042	13.5	0.0	0.056	13.1	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin
DUF953	PF06110.11	gi|564288026|ref|YP_008874219.1|	-	0.056	13.1	0.4	0.54	9.9	0.4	2.1	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF953)
KaiB	PF07689.12	gi|564288026|ref|YP_008874219.1|	-	0.15	11.8	0.0	0.23	11.2	0.0	1.2	1	0	0	1	1	1	0	KaiB	domain
DUF302	PF03625.14	gi|564288027|ref|YP_008874220.1|	-	6.4e-15	54.8	0.0	1e-14	54.1	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Methyltransf_11	PF08241.12	gi|564288028|ref|YP_008874221.1|	-	1e-16	61.4	0.0	1.7e-16	60.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288028|ref|YP_008874221.1|	-	4.3e-15	56.2	0.0	1e-14	55.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288028|ref|YP_008874221.1|	-	5.4e-08	32.8	0.0	1.3e-07	31.5	0.0	1.6	1	1	1	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288028|ref|YP_008874221.1|	-	4.6e-06	26.1	0.0	6e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
DREV	PF05219.12	gi|564288028|ref|YP_008874221.1|	-	4e-05	22.8	0.0	6.5e-05	22.1	0.0	1.3	1	0	0	1	1	1	1	DREV	methyltransferase
Methyltransf_23	PF13489.6	gi|564288028|ref|YP_008874221.1|	-	9.3e-05	22.3	0.0	0.00013	21.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288028|ref|YP_008874221.1|	-	0.0032	18.2	0.0	0.0068	17.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.19	gi|564288028|ref|YP_008874221.1|	-	0.0092	16.1	0.0	0.016	15.3	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
RrnaAD	PF00398.20	gi|564288028|ref|YP_008874221.1|	-	0.073	12.1	0.0	0.086	11.9	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_8	PF05148.15	gi|564288028|ref|YP_008874221.1|	-	0.13	12.1	0.0	0.24	11.2	0.0	1.6	1	1	0	1	1	1	0	Hypothetical	methyltransferase
UreF	PF01730.16	gi|564288029|ref|YP_008874222.1|	-	3.2e-29	102.2	8.0	4.5e-29	101.7	8.0	1.2	1	0	0	1	1	1	1	UreF
UreE_N	PF02814.15	gi|564288030|ref|YP_008874223.1|	-	3.5e-11	42.5	2.2	3.5e-11	42.5	2.2	1.8	2	0	0	2	2	2	1	UreE	urease	accessory	protein,	N-terminal	domain
UreE_C	PF05194.12	gi|564288030|ref|YP_008874223.1|	-	1.7e-05	25.2	0.6	3.1e-05	24.4	0.6	1.4	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
UreD	PF01774.17	gi|564288031|ref|YP_008874224.1|	-	3e-47	161.3	0.7	3.7e-47	161.0	0.7	1.1	1	0	0	1	1	1	1	UreD	urease	accessory	protein
cobW	PF02492.19	gi|564288032|ref|YP_008874225.1|	-	1.1e-31	109.8	0.0	1.3e-31	109.6	0.0	1.1	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.14	gi|564288032|ref|YP_008874225.1|	-	5.2e-09	36.1	0.0	8.5e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
MeaB	PF03308.16	gi|564288032|ref|YP_008874225.1|	-	4.7e-07	29.1	1.0	2.1e-06	26.9	1.0	1.8	1	1	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
ABC_tran	PF00005.27	gi|564288032|ref|YP_008874225.1|	-	0.0022	18.5	0.0	0.0022	18.5	0.0	1.4	1	1	0	1	1	1	1	ABC	transporter
RsgA_GTPase	PF03193.16	gi|564288032|ref|YP_008874225.1|	-	0.0026	17.7	0.1	1.4	8.8	0.0	2.5	3	0	0	3	3	3	2	RsgA	GTPase
AAA_18	PF13238.6	gi|564288032|ref|YP_008874225.1|	-	0.0079	16.7	0.0	0.012	16.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564288032|ref|YP_008874225.1|	-	0.012	15.4	0.0	0.015	15.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|564288032|ref|YP_008874225.1|	-	0.031	14.2	0.0	0.053	13.4	0.0	1.4	1	0	0	1	1	1	0	NTPase
TrwB_AAD_bind	PF10412.9	gi|564288032|ref|YP_008874225.1|	-	0.049	12.5	0.0	0.066	12.1	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
LpxK	PF02606.14	gi|564288032|ref|YP_008874225.1|	-	0.051	12.7	0.1	0.088	11.9	0.1	1.3	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
AAA_16	PF13191.6	gi|564288032|ref|YP_008874225.1|	-	0.081	13.3	0.0	0.1	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_26	PF13500.6	gi|564288032|ref|YP_008874225.1|	-	0.089	12.6	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.22	gi|564288032|ref|YP_008874225.1|	-	0.13	11.9	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
NACHT	PF05729.12	gi|564288032|ref|YP_008874225.1|	-	0.13	12.2	0.1	0.21	11.5	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
KAP_NTPase	PF07693.14	gi|564288032|ref|YP_008874225.1|	-	0.14	11.3	0.0	0.14	11.3	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
T2SSE	PF00437.20	gi|564288032|ref|YP_008874225.1|	-	0.19	10.7	0.0	0.26	10.3	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Urease_gamma	PF00547.18	gi|564288033|ref|YP_008874226.1|	-	4.8e-42	142.3	0.0	5.5e-42	142.1	0.0	1.0	1	0	0	1	1	1	1	Urease,	gamma	subunit
Amidohydro_1	PF01979.20	gi|564288034|ref|YP_008874227.1|	-	1.8e-64	218.3	0.3	2.3e-64	217.9	0.3	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|564288034|ref|YP_008874227.1|	-	1.9e-49	167.0	2.7	2.3e-49	166.7	1.5	1.8	2	0	0	2	2	2	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_3	PF07969.11	gi|564288034|ref|YP_008874227.1|	-	3.9e-10	39.8	3.6	3.1e-07	30.2	0.2	2.6	1	1	0	2	2	2	2	Amidohydrolase	family
Urease_beta	PF00699.20	gi|564288035|ref|YP_008874228.1|	-	7.5e-45	151.0	0.1	1e-44	150.5	0.1	1.2	1	0	0	1	1	1	1	Urease	beta	subunit
Peripla_BP_6	PF13458.6	gi|564288036|ref|YP_008874230.1|	-	6e-68	230.0	0.6	7.4e-68	229.7	0.6	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.6	gi|564288036|ref|YP_008874230.1|	-	3.3e-66	223.8	0.1	4.1e-66	223.4	0.1	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein	domain
TAT_signal	PF10518.9	gi|564288036|ref|YP_008874230.1|	-	0.0047	16.7	4.1	0.0093	15.8	4.1	1.5	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_2	PF02653.16	gi|564288037|ref|YP_008874231.1|	-	5.9e-36	124.0	35.6	8.9e-36	123.4	35.6	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF2613	PF11021.8	gi|564288037|ref|YP_008874231.1|	-	0.95	9.6	0.0	0.95	9.6	0.0	5.4	6	1	1	7	7	7	0	Protein	of	unknown	function	(DUF2613)
BPD_transp_2	PF02653.16	gi|564288038|ref|YP_008874232.1|	-	8.2e-33	113.7	39.6	8.2e-33	113.7	39.6	1.4	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|564288039|ref|YP_008874233.1|	-	4.1e-31	108.3	0.0	6e-31	107.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288039|ref|YP_008874233.1|	-	7.2e-09	35.9	1.9	0.0011	18.9	0.4	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288039|ref|YP_008874233.1|	-	7.9e-07	28.7	0.3	0.00034	20.1	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.6	gi|564288039|ref|YP_008874233.1|	-	2.6e-05	24.8	0.1	4.2e-05	24.1	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_27	PF13514.6	gi|564288039|ref|YP_008874233.1|	-	0.00011	21.9	0.0	0.00018	21.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288039|ref|YP_008874233.1|	-	0.00024	21.1	0.0	0.00051	20.0	0.0	1.5	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|564288039|ref|YP_008874233.1|	-	0.00053	19.7	0.0	0.00098	18.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
BCA_ABC_TP_C	PF12399.8	gi|564288039|ref|YP_008874233.1|	-	0.0039	17.1	0.2	0.0088	15.9	0.2	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_16	PF13191.6	gi|564288039|ref|YP_008874233.1|	-	0.0053	17.2	0.1	0.01	16.3	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.23	gi|564288039|ref|YP_008874233.1|	-	0.0057	16.7	0.0	0.026	14.6	0.0	1.9	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|564288039|ref|YP_008874233.1|	-	0.0061	16.3	0.0	0.0081	15.9	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564288039|ref|YP_008874233.1|	-	0.0064	16.2	0.0	0.011	15.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.6	gi|564288039|ref|YP_008874233.1|	-	0.0066	16.7	0.1	0.019	15.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
GTP_EFTU	PF00009.27	gi|564288039|ref|YP_008874233.1|	-	0.019	14.5	0.0	0.03	13.9	0.0	1.3	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
AAA_28	PF13521.6	gi|564288039|ref|YP_008874233.1|	-	0.22	11.8	1.7	2.6	8.3	0.1	2.5	2	1	1	3	3	3	0	AAA	domain
ABC_tran	PF00005.27	gi|564288040|ref|YP_008874234.1|	-	1.3e-34	119.7	0.0	2.2e-34	118.9	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288040|ref|YP_008874234.1|	-	3.2e-08	33.7	0.6	0.0017	18.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564288040|ref|YP_008874234.1|	-	9.7e-05	22.0	0.0	0.00019	21.1	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|564288040|ref|YP_008874234.1|	-	0.0056	17.1	0.1	0.0098	16.3	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|564288040|ref|YP_008874234.1|	-	0.0084	16.0	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_22	PF13401.6	gi|564288040|ref|YP_008874234.1|	-	0.0093	16.2	0.4	0.029	14.6	0.4	1.9	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.22	gi|564288040|ref|YP_008874234.1|	-	0.013	14.7	0.2	0.03	13.5	0.1	1.5	2	0	0	2	2	2	0	NB-ARC	domain
AAA	PF00004.29	gi|564288040|ref|YP_008874234.1|	-	0.022	15.2	0.2	0.037	14.5	0.2	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.15	gi|564288040|ref|YP_008874234.1|	-	0.022	14.7	1.1	0.05	13.5	0.2	2.0	2	1	1	3	3	3	0	NTPase
NACHT	PF05729.12	gi|564288040|ref|YP_008874234.1|	-	0.025	14.5	0.3	0.047	13.6	0.3	1.4	1	0	0	1	1	1	0	NACHT	domain
Mg_chelatase	PF01078.21	gi|564288040|ref|YP_008874234.1|	-	0.066	12.6	0.1	5.7	6.3	0.0	2.1	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
MobB	PF03205.14	gi|564288040|ref|YP_008874234.1|	-	0.089	12.7	0.1	0.16	11.8	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_14	PF13173.6	gi|564288040|ref|YP_008874234.1|	-	0.097	12.7	0.0	0.21	11.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_24	PF13479.6	gi|564288040|ref|YP_008874234.1|	-	0.12	12.1	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ATPase_2	PF01637.18	gi|564288040|ref|YP_008874234.1|	-	0.14	12.0	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
MMR_HSR1	PF01926.23	gi|564288040|ref|YP_008874234.1|	-	0.15	12.2	0.3	0.33	11.0	0.2	1.6	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
SMC_N	PF02463.19	gi|564288040|ref|YP_008874234.1|	-	0.17	11.3	0.5	0.62	9.4	0.5	1.8	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
DLIC	PF05783.11	gi|564288040|ref|YP_008874234.1|	-	0.18	10.6	0.0	0.25	10.1	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_30	PF13604.6	gi|564288040|ref|YP_008874234.1|	-	0.33	10.6	2.0	0.28	10.9	0.5	1.8	2	1	0	2	2	2	0	AAA	domain
SNF	PF00209.18	gi|564288041|ref|YP_008874235.1|	-	1.3e-46	159.4	28.0	4.5e-26	91.6	13.0	2.1	2	0	0	2	2	2	2	Sodium:neurotransmitter	symporter	family
MaoC_dehydratas	PF01575.19	gi|564288042|ref|YP_008874236.1|	-	8.5e-17	60.9	0.0	1.1e-16	60.5	0.0	1.1	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.6	gi|564288042|ref|YP_008874236.1|	-	6e-08	32.9	0.0	1.9e-07	31.3	0.0	1.7	1	1	0	1	1	1	1	N-terminal	half	of	MaoC	dehydratase
COE1_HLH	PF16423.5	gi|564288042|ref|YP_008874236.1|	-	0.097	12.4	0.1	0.16	11.7	0.1	1.3	1	0	0	1	1	1	0	Transcription	factor	COE1	helix-loop-helix	domain
Creatininase	PF02633.14	gi|564288043|ref|YP_008874237.1|	-	5.1e-63	212.8	0.4	5.7e-63	212.6	0.4	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
DUF393	PF04134.12	gi|564288044|ref|YP_008874238.1|	-	0.0019	19.5	0.0	0.002	19.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF393
TraF	PF13728.6	gi|564288044|ref|YP_008874238.1|	-	0.067	13.0	0.0	0.095	12.5	0.0	1.3	1	1	0	1	1	1	0	F	plasmid	transfer	operon	protein
SHOCT	PF09851.9	gi|564288294|ref|YP_008874239.1|	-	2.8e-07	30.0	0.1	4.5e-07	29.4	0.1	1.4	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF1707	PF08044.11	gi|564288294|ref|YP_008874239.1|	-	4e-05	23.6	1.1	7.1e-05	22.8	1.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
Sulfate_transp	PF00916.20	gi|564288294|ref|YP_008874239.1|	-	0.016	14.0	0.0	0.02	13.7	0.0	1.1	1	0	0	1	1	1	0	Sulfate	permease	family
DUF5368	PF17336.2	gi|564288046|ref|YP_008874241.1|	-	0.12	12.5	4.7	0.054	13.7	1.6	1.8	1	1	1	2	2	2	0	Family	of	unknown	function	(DUF5368)
FtsK_gamma	PF09397.10	gi|564288046|ref|YP_008874241.1|	-	0.14	12.0	0.0	1.1	9.1	0.0	2.3	3	0	0	3	3	3	0	Ftsk	gamma	domain
DUF3267	PF11667.8	gi|564288046|ref|YP_008874241.1|	-	2.9	8.2	5.3	2.2	8.6	1.5	2.5	2	1	1	3	3	3	0	Putative	zincin	peptidase
PQQ_2	PF13360.6	gi|564288047|ref|YP_008874242.1|	-	9.1e-34	117.1	28.6	9.3e-22	77.8	8.3	3.0	1	1	2	3	3	3	3	PQQ-like	domain
PQQ_3	PF13570.6	gi|564288047|ref|YP_008874242.1|	-	4.6e-13	49.2	38.9	0.015	15.7	0.8	8.0	7	1	0	7	7	7	6	PQQ-like	domain
PQQ	PF01011.21	gi|564288047|ref|YP_008874242.1|	-	3.2e-06	26.8	2.4	6.9	6.8	0.1	6.1	5	0	0	5	5	5	3	PQQ	enzyme	repeat
MTH865	PF07747.11	gi|564288049|ref|YP_008874244.1|	-	1.7e-24	85.4	0.1	1.9e-24	85.2	0.1	1.0	1	0	0	1	1	1	1	MTH865-like	family
HMA	PF00403.26	gi|564288050|ref|YP_008874245.1|	-	1.1e-16	61.0	0.4	1.2e-16	60.9	0.4	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
BOFC_N	PF08977.10	gi|564288050|ref|YP_008874245.1|	-	0.13	12.3	0.1	0.89	9.6	0.0	1.9	2	0	0	2	2	2	0	Bypass	of	Forespore	C,	N	terminal
Usp	PF00582.26	gi|564288051|ref|YP_008874246.1|	-	1.3e-26	93.8	1.5	1.4e-26	93.7	1.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DNA_photolyase	PF00875.18	gi|564288051|ref|YP_008874246.1|	-	0.014	15.4	0.1	0.025	14.6	0.1	1.4	1	1	0	1	1	1	0	DNA	photolyase
Sulfatase	PF00884.23	gi|564288052|ref|YP_008874247.1|	-	7.2e-32	111.0	0.0	1.1e-31	110.4	0.0	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564288052|ref|YP_008874247.1|	-	1.5e-07	31.3	0.1	0.015	14.9	0.2	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Phosphoesterase	PF04185.14	gi|564288052|ref|YP_008874247.1|	-	0.0024	17.1	0.0	0.19	10.9	0.0	2.2	2	0	0	2	2	2	2	Phosphoesterase	family
DUF229	PF02995.17	gi|564288052|ref|YP_008874247.1|	-	0.0031	16.2	0.0	0.0045	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
DUF1501	PF07394.12	gi|564288052|ref|YP_008874247.1|	-	0.0036	16.4	0.0	0.0059	15.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1501)
Metalloenzyme	PF01676.18	gi|564288052|ref|YP_008874247.1|	-	0.15	11.4	0.0	0.29	10.4	0.0	1.4	1	0	0	1	1	1	0	Metalloenzyme	superfamily
Alk_phosphatase	PF00245.20	gi|564288052|ref|YP_008874247.1|	-	0.2	10.6	0.1	11	4.9	0.0	2.3	2	1	0	2	2	2	0	Alkaline	phosphatase
PIN_2	PF10130.9	gi|564288053|ref|YP_008874248.1|	-	0.086	13.1	0.1	0.1	12.8	0.1	1.4	1	0	0	1	1	1	0	PIN	domain
RHH_8	PF17723.1	gi|564288053|ref|YP_008874248.1|	-	0.11	12.7	0.0	1	9.5	0.0	2.0	2	0	0	2	2	2	0	Ribbon-Helix-Helix	transcriptional	regulator	family
Pyr_redox_2	PF07992.14	gi|564288054|ref|YP_008874249.1|	-	4.2e-27	95.1	0.0	5.5e-27	94.8	0.0	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288054|ref|YP_008874249.1|	-	2.1e-14	53.5	0.0	4.9e-09	35.9	0.0	2.8	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564288054|ref|YP_008874249.1|	-	6.2e-06	26.7	0.0	0.058	14.0	0.2	2.4	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288054|ref|YP_008874249.1|	-	6.2e-06	25.5	3.4	0.0003	20.0	0.8	2.6	2	1	0	3	3	3	2	FAD	binding	domain
DAO	PF01266.24	gi|564288054|ref|YP_008874249.1|	-	3.7e-05	23.5	3.2	0.011	15.3	1.9	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.6	gi|564288054|ref|YP_008874249.1|	-	5.9e-05	22.4	0.0	0.0003	20.0	0.0	1.8	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_3	PF01494.19	gi|564288054|ref|YP_008874249.1|	-	8.9e-05	21.9	0.6	0.00014	21.2	0.6	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|564288054|ref|YP_008874249.1|	-	0.00021	20.1	0.2	0.019	13.6	0.5	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.7	gi|564288054|ref|YP_008874249.1|	-	0.00035	20.1	1.9	0.00063	19.2	0.6	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|564288054|ref|YP_008874249.1|	-	0.00081	18.6	0.4	0.0017	17.5	0.2	1.6	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|564288054|ref|YP_008874249.1|	-	0.004	16.4	0.1	0.0073	15.6	0.1	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|564288054|ref|YP_008874249.1|	-	0.014	15.6	0.3	0.042	14.1	0.3	1.9	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.6	gi|564288054|ref|YP_008874249.1|	-	0.017	15.1	0.7	0.54	10.2	0.0	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.12	gi|564288054|ref|YP_008874249.1|	-	0.074	12.1	0.4	0.43	9.6	0.3	1.9	1	1	1	2	2	2	0	Lycopene	cyclase	protein
RVT_3	PF13456.6	gi|564288295|ref|YP_008874250.1|	-	6.3e-10	38.9	0.0	8.5e-10	38.5	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.24	gi|564288295|ref|YP_008874250.1|	-	1.5e-08	34.9	0.0	2.5e-08	34.2	0.0	1.3	1	0	0	1	1	1	1	RNase	H
SCP_3	PF17844.1	gi|564288295|ref|YP_008874250.1|	-	0.048	13.4	0.1	0.16	11.7	0.0	1.9	1	1	0	2	2	2	0	Bacterial	SCP	ortholog
LRV	PF01816.17	gi|564288295|ref|YP_008874250.1|	-	1.4	9.5	5.4	5.3	7.7	0.4	3.2	2	1	1	3	3	3	0	Leucine	rich	repeat	variant
GSDH	PF07995.11	gi|564288055|ref|YP_008874251.1|	-	9.1e-114	380.2	0.0	1.1e-113	380.0	0.0	1.0	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
TAT_signal	PF10518.9	gi|564288055|ref|YP_008874251.1|	-	0.004	16.9	2.5	0.004	16.9	2.5	1.8	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glucodextran_B	PF09136.10	gi|564288055|ref|YP_008874251.1|	-	0.63	10.4	4.6	3.3	8.2	0.1	2.6	1	1	1	2	2	2	0	Glucodextranase,	domain	B
DUF202	PF02656.15	gi|564288296|ref|YP_008874252.1|	-	0.56	10.7	2.7	0.69	10.4	2.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
PHO4	PF01384.20	gi|564288056|ref|YP_008874254.1|	-	1.4e-35	122.9	40.0	1.4e-34	119.6	38.3	2.5	1	1	0	1	1	1	1	Phosphate	transporter	family
AA_permease_2	PF13520.6	gi|564288057|ref|YP_008874255.1|	-	1.2e-42	146.2	41.1	1.5e-42	145.9	41.1	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564288057|ref|YP_008874255.1|	-	3.1e-42	144.8	39.3	3.9e-42	144.4	39.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|564288057|ref|YP_008874255.1|	-	0.00029	19.8	12.2	0.00029	19.8	12.2	2.2	2	1	0	2	2	2	1	Spore	germination	protein
Usp	PF00582.26	gi|564288058|ref|YP_008874256.1|	-	1.3e-06	28.9	0.9	0.00015	22.3	0.1	2.5	2	1	0	2	2	2	2	Universal	stress	protein	family
SCO1-SenC	PF02630.14	gi|564288059|ref|YP_008874257.1|	-	6.4e-21	74.7	0.2	8.2e-21	74.3	0.2	1.1	1	0	0	1	1	1	1	SCO1/SenC
TAT_signal	PF10518.9	gi|564288059|ref|YP_008874257.1|	-	0.0037	17.1	1.5	0.0059	16.4	1.5	1.3	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
KRAB	PF01352.27	gi|564288059|ref|YP_008874257.1|	-	0.11	12.2	0.1	0.25	11.0	0.1	1.6	1	0	0	1	1	1	0	KRAB	box
Redoxin	PF08534.10	gi|564288060|ref|YP_008874258.1|	-	2.2e-07	30.7	0.0	2.8e-07	30.4	0.0	1.1	1	0	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.21	gi|564288060|ref|YP_008874258.1|	-	5.4e-06	26.3	0.0	7.2e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Thioredoxin_8	PF13905.6	gi|564288060|ref|YP_008874258.1|	-	0.00019	21.7	0.0	0.00032	21.0	0.0	1.3	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin	PF00085.20	gi|564288060|ref|YP_008874258.1|	-	0.00066	19.6	0.0	0.0014	18.6	0.0	1.4	2	0	0	2	2	2	1	Thioredoxin
Thioredoxin_2	PF13098.6	gi|564288060|ref|YP_008874258.1|	-	0.085	13.3	0.0	0.13	12.7	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like	domain
DsbD	PF02683.15	gi|564288061|ref|YP_008874259.1|	-	5e-14	52.7	12.8	8.9e-14	51.9	12.8	1.3	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DUF3188	PF11384.8	gi|564288061|ref|YP_008874259.1|	-	0.098	12.4	0.4	0.098	12.4	0.4	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
TrkH	PF02386.16	gi|564288062|ref|YP_008874260.1|	-	1e-66	225.4	14.4	6.3e-66	222.8	14.4	2.0	1	1	0	1	1	1	1	Cation	transport	protein
TrkA_N	PF02254.18	gi|564288063|ref|YP_008874261.1|	-	7.4e-25	87.5	4.6	1.1e-24	86.9	2.5	2.0	2	0	0	2	2	2	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564288063|ref|YP_008874261.1|	-	4e-14	52.2	0.5	1.5e-12	47.2	0.1	2.4	2	0	0	2	2	2	1	TrkA-C	domain
Shikimate_DH	PF01488.20	gi|564288063|ref|YP_008874261.1|	-	0.0005	20.2	0.2	0.00081	19.5	0.2	1.4	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.6	gi|564288063|ref|YP_008874261.1|	-	0.00097	19.5	0.9	0.002	18.5	0.3	1.7	2	0	0	2	2	2	1	Putative	NAD(P)-binding
NAD_binding_2	PF03446.15	gi|564288063|ref|YP_008874261.1|	-	0.0011	19.2	0.5	0.0027	17.9	0.2	1.8	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ADH_zinc_N	PF00107.26	gi|564288063|ref|YP_008874261.1|	-	0.0022	17.9	0.4	0.0078	16.2	0.5	1.7	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|564288063|ref|YP_008874261.1|	-	0.0037	16.6	1.8	0.0058	15.9	1.8	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288063|ref|YP_008874261.1|	-	0.0042	17.3	0.9	0.0093	16.2	0.9	1.7	1	1	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
NAD_binding_10	PF13460.6	gi|564288063|ref|YP_008874261.1|	-	0.005	16.8	3.1	0.0073	16.2	1.8	1.9	1	1	0	1	1	1	1	NAD(P)H-binding
XdhC_C	PF13478.6	gi|564288063|ref|YP_008874261.1|	-	0.0069	16.9	0.1	0.013	16.0	0.1	1.5	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Pyr_redox	PF00070.27	gi|564288063|ref|YP_008874261.1|	-	0.011	16.3	0.4	0.043	14.4	0.2	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Peripla_BP_3	PF13377.6	gi|564288063|ref|YP_008874261.1|	-	0.012	15.9	0.1	0.017	15.4	0.1	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein-like	domain
PEP-utilizers	PF00391.23	gi|564288063|ref|YP_008874261.1|	-	0.022	14.5	0.0	0.055	13.2	0.0	1.7	1	0	0	1	1	1	0	PEP-utilising	enzyme,	mobile	domain
GFO_IDH_MocA	PF01408.22	gi|564288063|ref|YP_008874261.1|	-	0.033	15.0	0.6	0.1	13.5	0.6	1.8	1	1	0	1	1	1	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
3HCDH_N	PF02737.18	gi|564288063|ref|YP_008874261.1|	-	0.039	13.8	0.3	0.059	13.2	0.3	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.14	gi|564288063|ref|YP_008874261.1|	-	0.04	13.5	1.8	0.18	11.3	0.4	2.1	1	1	1	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ATPgrasp_N	PF18130.1	gi|564288063|ref|YP_008874261.1|	-	0.049	14.2	1.8	0.11	13.1	1.8	1.6	1	0	0	1	1	1	0	ATP-grasp	N-terminal	domain
PK_C	PF02887.16	gi|564288063|ref|YP_008874261.1|	-	0.084	13.1	0.2	0.21	11.8	0.2	1.7	1	1	0	1	1	1	0	Pyruvate	kinase,	alpha/beta	domain
2-Hacid_dh_C	PF02826.19	gi|564288063|ref|YP_008874261.1|	-	0.085	12.2	0.3	0.24	10.7	0.1	1.8	2	1	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288063|ref|YP_008874261.1|	-	0.39	9.9	3.1	3.5	6.8	1.1	2.1	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
p25-alpha	PF05517.12	gi|564288064|ref|YP_008874262.1|	-	0.091	12.9	0.0	0.11	12.7	0.0	1.1	1	0	0	1	1	1	0	p25-alpha
TrkA_C	PF02080.21	gi|564288065|ref|YP_008874263.1|	-	6.5e-13	48.3	0.6	1.2e-12	47.5	0.6	1.4	1	0	0	1	1	1	1	TrkA-C	domain
HTH_24	PF13412.6	gi|564288065|ref|YP_008874263.1|	-	6e-12	44.9	0.2	1.2e-11	44.0	0.2	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564288065|ref|YP_008874263.1|	-	2.6e-11	43.2	0.4	4.9e-11	42.3	0.4	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564288065|ref|YP_008874263.1|	-	4.9e-06	26.4	0.0	1.1e-05	25.3	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564288065|ref|YP_008874263.1|	-	1.7e-05	24.8	0.0	3.5e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288065|ref|YP_008874263.1|	-	8.3e-05	22.3	0.0	0.00019	21.1	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288065|ref|YP_008874263.1|	-	0.00012	21.8	0.1	0.00062	19.6	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HrcA_DNA-bdg	PF03444.15	gi|564288065|ref|YP_008874263.1|	-	0.00037	20.1	0.0	0.00063	19.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Fe_dep_repress	PF01325.19	gi|564288065|ref|YP_008874263.1|	-	0.0013	18.8	0.0	0.0026	17.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|564288065|ref|YP_008874263.1|	-	0.0055	16.6	0.0	0.016	15.1	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_28	PF13518.6	gi|564288065|ref|YP_008874263.1|	-	0.0081	16.3	0.0	0.014	15.5	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564288065|ref|YP_008874263.1|	-	0.0087	15.8	0.0	0.019	14.8	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Rrf2	PF02082.20	gi|564288065|ref|YP_008874263.1|	-	0.024	15.0	0.1	0.063	13.6	0.0	1.7	2	0	0	2	2	1	0	Transcriptional	regulator
MarR	PF01047.22	gi|564288065|ref|YP_008874263.1|	-	0.028	14.3	0.0	0.16	12.0	0.0	2.1	2	0	0	2	2	2	0	MarR	family
HTH_38	PF13936.6	gi|564288065|ref|YP_008874263.1|	-	0.11	12.3	0.1	0.26	11.1	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|564288065|ref|YP_008874263.1|	-	0.12	11.8	0.0	0.25	10.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Med11	PF10280.9	gi|564288065|ref|YP_008874263.1|	-	0.13	12.7	0.2	3.8	8.0	0.0	2.3	2	1	0	2	2	2	0	Mediator	complex	protein
HTH_13	PF11972.8	gi|564288065|ref|YP_008874263.1|	-	0.15	12.2	0.1	4	7.6	0.0	2.4	2	0	0	2	2	2	0	HTH	DNA	binding	domain
Usp	PF00582.26	gi|564288298|ref|YP_008874264.1|	-	9.4e-10	39.2	3.8	0.00012	22.6	1.4	3.2	2	2	0	2	2	2	2	Universal	stress	protein	family
MafB	PF06255.13	gi|564288298|ref|YP_008874264.1|	-	0.13	11.7	0.2	0.17	11.3	0.2	1.2	1	0	0	1	1	1	0	Neisseria	toxin	MafB
Nitroreductase	PF00881.24	gi|564288066|ref|YP_008874265.1|	-	1.9e-17	63.8	0.3	3.9e-08	33.5	0.1	2.1	1	1	1	2	2	2	2	Nitroreductase	family
TM1586_NiRdase	PF14512.6	gi|564288066|ref|YP_008874265.1|	-	6.7e-05	22.5	0.0	0.0002	21.0	0.0	1.7	2	0	0	2	2	2	1	Putative	TM	nitroreductase
LtrA	PF06772.11	gi|564288067|ref|YP_008874266.1|	-	0.0096	15.2	6.8	0.0096	15.2	6.8	2.7	2	1	1	3	3	3	1	Bacterial	low	temperature	requirement	A	protein	(LtrA)
Nudix_N_2	PF14803.6	gi|564288067|ref|YP_008874266.1|	-	0.42	10.6	1.1	0.58	10.1	0.3	1.7	2	0	0	2	2	2	0	Nudix	N-terminal
HTH_Crp_2	PF13545.6	gi|564288068|ref|YP_008874267.1|	-	5.2e-09	36.0	0.1	9.4e-09	35.1	0.1	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DprA_WH	PF17782.1	gi|564288068|ref|YP_008874267.1|	-	3.1e-06	27.2	0.3	7.6e-06	25.9	0.3	1.7	1	0	0	1	1	1	1	DprA	winged	helix	domain
MarR_2	PF12802.7	gi|564288068|ref|YP_008874267.1|	-	3.4e-06	26.8	0.1	7.1e-06	25.8	0.1	1.5	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564288068|ref|YP_008874267.1|	-	0.0001	22.2	0.0	0.00016	21.5	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564288068|ref|YP_008874267.1|	-	0.00015	21.3	0.1	0.00024	20.6	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|564288068|ref|YP_008874267.1|	-	0.00031	20.5	0.0	0.00058	19.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564288068|ref|YP_008874267.1|	-	0.00047	20.0	0.0	0.00083	19.2	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|564288068|ref|YP_008874267.1|	-	0.00096	19.2	0.3	0.002	18.2	0.3	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
Crp	PF00325.20	gi|564288068|ref|YP_008874267.1|	-	0.0021	17.7	0.0	0.0039	16.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	crp	family
Rrf2	PF02082.20	gi|564288068|ref|YP_008874267.1|	-	0.004	17.5	0.0	0.0081	16.5	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288068|ref|YP_008874267.1|	-	0.0048	16.7	0.3	0.022	14.6	0.0	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|564288068|ref|YP_008874267.1|	-	0.016	14.8	0.0	0.031	13.9	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|564288068|ref|YP_008874267.1|	-	0.018	15.0	0.0	0.03	14.3	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_7	PF02796.15	gi|564288068|ref|YP_008874267.1|	-	0.023	14.8	0.0	0.036	14.1	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
HTH_3	PF01381.22	gi|564288068|ref|YP_008874267.1|	-	0.1	12.6	0.0	0.19	11.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix
GP17	PF17420.2	gi|564288068|ref|YP_008874267.1|	-	0.16	12.2	0.0	0.27	11.4	0.0	1.5	1	0	0	1	1	1	0	Superinfection	exclusion	gene	product	17
ABC_tran	PF00005.27	gi|564288069|ref|YP_008874268.1|	-	1.3e-24	87.2	0.0	1.9e-24	86.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288069|ref|YP_008874268.1|	-	2.4e-12	47.3	0.0	7.6e-07	29.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
MeaB	PF03308.16	gi|564288069|ref|YP_008874268.1|	-	6.1e-05	22.1	0.1	9.5e-05	21.5	0.1	1.2	1	0	0	1	1	1	1	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
SMC_N	PF02463.19	gi|564288069|ref|YP_008874268.1|	-	0.00016	21.2	0.0	0.15	11.5	0.0	2.3	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|564288069|ref|YP_008874268.1|	-	0.00037	20.3	0.0	0.26	10.9	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564288069|ref|YP_008874268.1|	-	0.0021	18.6	0.1	0.0034	17.9	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564288069|ref|YP_008874268.1|	-	0.0091	15.7	0.0	0.026	14.3	0.0	1.7	2	1	1	3	3	3	1	AAA	domain
AAA_16	PF13191.6	gi|564288069|ref|YP_008874268.1|	-	0.013	15.9	0.0	0.028	14.8	0.0	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564288069|ref|YP_008874268.1|	-	0.021	15.2	0.5	1.1	9.7	0.1	2.7	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP_bind_1	PF03029.17	gi|564288069|ref|YP_008874268.1|	-	0.023	14.5	0.1	0.053	13.3	0.1	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
SRP54	PF00448.22	gi|564288069|ref|YP_008874268.1|	-	0.077	12.6	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.6	gi|564288069|ref|YP_008874268.1|	-	0.078	13.3	0.0	0.13	12.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
MukB	PF04310.12	gi|564288069|ref|YP_008874268.1|	-	0.1	12.4	0.1	0.18	11.6	0.1	1.3	1	0	0	1	1	1	0	MukB	N-terminal
RsgA_GTPase	PF03193.16	gi|564288069|ref|YP_008874268.1|	-	0.19	11.6	0.0	0.58	10.0	0.0	1.7	2	0	0	2	2	2	0	RsgA	GTPase
AAA_27	PF13514.6	gi|564288069|ref|YP_008874268.1|	-	0.22	11.1	0.0	0.33	10.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.6	gi|564288069|ref|YP_008874268.1|	-	0.29	9.7	0.4	10	4.6	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
LSPR	PF06049.12	gi|564288069|ref|YP_008874268.1|	-	0.99	9.5	4.9	27	5.1	0.2	3.7	3	1	0	3	3	3	0	Coagulation	Factor	V	LSPD	Repeat
DUF2249	PF10006.9	gi|564288071|ref|YP_008874270.1|	-	6e-24	83.7	0.2	6.6e-24	83.6	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DUF2378	PF09536.10	gi|564288073|ref|YP_008874272.1|	-	0.015	15.2	0.0	1.7	8.5	0.0	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2378)
MarR_2	PF12802.7	gi|564288074|ref|YP_008874273.1|	-	2.2e-06	27.5	0.7	5.4e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|564288074|ref|YP_008874273.1|	-	5.4e-06	26.1	0.0	1.2e-05	25.0	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
RP-C	PF03428.13	gi|564288074|ref|YP_008874273.1|	-	6.7e-05	22.6	2.9	0.00033	20.3	0.0	2.7	3	0	0	3	3	3	1	Replication	protein	C	N-terminal	domain
MarR	PF01047.22	gi|564288074|ref|YP_008874273.1|	-	0.00013	21.8	0.0	0.00029	20.7	0.0	1.6	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|564288074|ref|YP_008874273.1|	-	0.0003	20.6	0.0	0.0006	19.6	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|564288074|ref|YP_008874273.1|	-	0.00033	21.1	0.1	0.0018	18.7	0.0	2.1	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
GntR	PF00392.21	gi|564288074|ref|YP_008874273.1|	-	0.011	15.4	1.1	0.036	13.7	0.0	2.4	3	1	0	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.20	gi|564288074|ref|YP_008874273.1|	-	0.02	14.8	0.0	0.045	13.6	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Rrf2	PF02082.20	gi|564288074|ref|YP_008874273.1|	-	0.024	15.0	0.0	0.05	14.0	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
DUF1690	PF07956.11	gi|564288074|ref|YP_008874273.1|	-	0.12	12.8	4.0	0.19	12.2	4.0	1.3	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF1690)
Syntaxin-6_N	PF09177.11	gi|564288074|ref|YP_008874273.1|	-	0.95	10.1	6.7	0.78	10.3	4.3	2.1	2	1	0	2	2	2	0	Syntaxin	6,	N-terminal
HTH_20	PF12840.7	gi|564288075|ref|YP_008874274.1|	-	6.1e-12	45.4	0.3	8.1e-12	45.0	0.3	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288075|ref|YP_008874274.1|	-	7.3e-07	29.0	0.1	1.4e-06	28.0	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564288075|ref|YP_008874274.1|	-	1.4e-06	28.0	0.0	3.2e-06	26.9	0.0	1.6	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.6	gi|564288075|ref|YP_008874274.1|	-	6e-06	25.7	0.0	1.1e-05	24.9	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.6	gi|564288075|ref|YP_008874274.1|	-	8.5e-06	26.2	0.0	5.2e-05	23.7	0.0	2.0	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
DUF2513	PF10711.9	gi|564288075|ref|YP_008874274.1|	-	0.0028	17.9	0.0	0.0034	17.7	0.0	1.1	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
TrmB	PF01978.19	gi|564288075|ref|YP_008874274.1|	-	0.0048	16.7	0.0	0.0078	16.1	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|564288075|ref|YP_008874274.1|	-	0.0095	15.8	0.0	0.017	15.0	0.0	1.4	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.12	gi|564288075|ref|YP_008874274.1|	-	0.11	12.7	0.0	0.15	12.3	0.0	1.2	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|564288075|ref|YP_008874274.1|	-	0.11	12.5	0.0	0.15	12.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix
Sigma70_r4	PF04545.16	gi|564288075|ref|YP_008874274.1|	-	0.13	11.8	0.0	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
Fructosamin_kin	PF03881.14	gi|564288076|ref|YP_008874275.1|	-	4.5e-41	141.0	0.0	5.5e-41	140.7	0.0	1.0	1	0	0	1	1	1	1	Fructosamine	kinase
APH	PF01636.23	gi|564288076|ref|YP_008874275.1|	-	1.3e-14	54.7	5.1	1.7e-14	54.3	5.1	1.1	1	0	0	1	1	1	1	Phosphotransferase	enzyme	family
APH_6_hur	PF04655.14	gi|564288076|ref|YP_008874275.1|	-	0.0023	17.4	0.0	0.0049	16.3	0.0	1.5	1	0	0	1	1	1	1	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
Sugar_tr	PF00083.24	gi|564288077|ref|YP_008874276.1|	-	2.6e-123	412.2	20.9	3e-123	412.0	20.9	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.16	gi|564288077|ref|YP_008874276.1|	-	1.4e-42	145.9	77.4	4.5e-33	114.6	42.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
TRI12	PF06609.13	gi|564288077|ref|YP_008874276.1|	-	1.9e-08	33.2	2.8	1.9e-08	33.2	2.8	2.1	2	0	0	2	2	2	1	Fungal	trichothecene	efflux	pump	(TRI12)
MFS_1_like	PF12832.7	gi|564288077|ref|YP_008874276.1|	-	0.00077	18.4	0.2	0.00077	18.4	0.2	2.8	1	1	1	3	3	3	1	MFS_1	like	family
Bac_export_3	PF01313.19	gi|564288077|ref|YP_008874276.1|	-	0.021	14.8	0.3	0.021	14.8	0.3	3.6	3	1	0	3	3	3	0	Bacterial	export	proteins,	family	3
MFS_3	PF05977.13	gi|564288077|ref|YP_008874276.1|	-	0.083	11.3	18.1	0.015	13.7	7.8	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
Usp	PF00582.26	gi|564288078|ref|YP_008874277.1|	-	1.2e-16	61.5	0.8	1.5e-16	61.2	0.8	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Peripla_BP_2	PF01497.18	gi|564288079|ref|YP_008874278.1|	-	5.2e-19	68.7	0.0	8.3e-19	68.1	0.0	1.4	1	1	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|564288079|ref|YP_008874278.1|	-	0.0019	18.0	0.5	0.0033	17.2	0.5	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Sdh5	PF03937.16	gi|564288079|ref|YP_008874278.1|	-	0.14	12.2	0.1	6.8	6.7	0.0	2.5	2	0	0	2	2	2	0	Flavinator	of	succinate	dehydrogenase
Peripla_BP_2	PF01497.18	gi|564288080|ref|YP_008874279.1|	-	6.5e-24	84.8	0.0	1.1e-23	84.1	0.0	1.3	1	0	0	1	1	1	1	Periplasmic	binding	protein
TAT_signal	PF10518.9	gi|564288080|ref|YP_008874279.1|	-	0.0019	18.0	0.0	0.0031	17.3	0.0	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
YqgF	PF14639.6	gi|564288080|ref|YP_008874279.1|	-	0.073	12.8	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	Holliday-junction	resolvase-like	of	SPT6
Peripla_BP_2	PF01497.18	gi|564288081|ref|YP_008874280.1|	-	1.6e-11	44.2	0.0	2.3e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
HTH_24	PF13412.6	gi|564288082|ref|YP_008874281.1|	-	2.8e-12	46.0	0.2	4.4e-12	45.4	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|564288082|ref|YP_008874281.1|	-	3.4e-11	42.8	0.9	6.3e-11	41.9	0.9	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564288082|ref|YP_008874281.1|	-	1.2e-05	25.2	0.0	2e-05	24.4	0.0	1.4	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|564288082|ref|YP_008874281.1|	-	4.1e-05	23.6	0.0	0.0001	22.3	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288082|ref|YP_008874281.1|	-	0.00016	21.3	0.1	0.005	16.6	0.1	2.2	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288082|ref|YP_008874281.1|	-	0.00022	21.0	0.0	0.00042	20.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|564288082|ref|YP_008874281.1|	-	0.00026	20.8	0.0	0.00052	19.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.10	gi|564288082|ref|YP_008874281.1|	-	0.00035	20.3	0.0	0.00063	19.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.20	gi|564288082|ref|YP_008874281.1|	-	0.0005	20.4	0.0	0.0011	19.2	0.0	1.6	2	0	0	2	2	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|564288082|ref|YP_008874281.1|	-	0.0014	18.8	0.0	0.0027	17.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4_2	PF08281.12	gi|564288082|ref|YP_008874281.1|	-	0.0032	17.1	0.0	0.0058	16.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_27	PF13463.6	gi|564288082|ref|YP_008874281.1|	-	0.0075	16.7	0.1	0.018	15.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_19	PF12844.7	gi|564288082|ref|YP_008874281.1|	-	0.017	15.1	0.5	0.064	13.3	0.5	1.9	1	1	0	1	1	1	0	Helix-turn-helix	domain
Put_DNA-bind_N	PF06971.13	gi|564288082|ref|YP_008874281.1|	-	0.018	15.0	0.1	0.031	14.3	0.1	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_Mga	PF08280.11	gi|564288082|ref|YP_008874281.1|	-	0.022	14.8	0.0	0.036	14.1	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_Tnp_ISL3	PF13542.6	gi|564288082|ref|YP_008874281.1|	-	0.051	13.0	0.2	0.11	11.9	0.1	1.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
MarR	PF01047.22	gi|564288082|ref|YP_008874281.1|	-	0.078	12.9	0.0	0.23	11.4	0.0	1.7	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.6	gi|564288082|ref|YP_008874281.1|	-	0.11	12.5	0.1	0.23	11.4	0.0	1.5	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_36	PF13730.6	gi|564288082|ref|YP_008874281.1|	-	0.15	12.1	0.0	0.24	11.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Proton_antipo_M	PF00361.20	gi|564288083|ref|YP_008874282.1|	-	1.9e-34	119.2	17.4	1.9e-34	119.2	17.4	2.4	1	1	0	2	2	2	1	Proton-conducting	membrane	transporter
Proton_antipo_N	PF00662.20	gi|564288083|ref|YP_008874282.1|	-	3.1e-07	30.4	0.1	2.6e-06	27.4	0.1	2.7	1	0	0	1	1	1	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
DUF2309	PF10070.9	gi|564288084|ref|YP_008874283.1|	-	2.8e-264	879.1	0.0	3.1e-264	878.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2309)
Bac_luciferase	PF00296.20	gi|564288085|ref|YP_008874284.1|	-	6.7e-33	114.4	2.0	7.7e-33	114.2	2.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
ADH_N	PF08240.12	gi|564288086|ref|YP_008874285.1|	-	1.4e-31	108.6	0.4	2.7e-31	107.7	0.4	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288086|ref|YP_008874285.1|	-	2e-28	99.0	0.7	2.9e-28	98.5	0.7	1.2	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|564288086|ref|YP_008874285.1|	-	3.2e-12	46.4	2.9	4.6e-12	45.9	2.9	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|564288086|ref|YP_008874285.1|	-	2.2e-05	25.5	0.5	4.4e-05	24.5	0.5	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_3	PF03447.16	gi|564288086|ref|YP_008874285.1|	-	0.00064	20.4	2.4	0.0011	19.6	2.4	1.4	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564288086|ref|YP_008874285.1|	-	0.041	13.2	0.1	0.073	12.4	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
MR_MLE_C	PF13378.6	gi|564288087|ref|YP_008874286.1|	-	5.1e-62	209.3	0.2	7.3e-62	208.8	0.2	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564288087|ref|YP_008874286.1|	-	2.1e-21	76.3	0.0	4.4e-21	75.3	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
adh_short_C2	PF13561.6	gi|564288088|ref|YP_008874287.1|	-	5e-74	248.8	1.3	5.8e-74	248.6	1.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564288088|ref|YP_008874287.1|	-	7.8e-60	201.7	2.8	9.4e-60	201.4	2.8	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564288088|ref|YP_008874287.1|	-	4.7e-14	52.7	0.9	6.5e-14	52.2	0.9	1.2	1	0	0	1	1	1	1	KR	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288088|ref|YP_008874287.1|	-	0.0012	19.1	0.1	0.0019	18.5	0.1	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
KdpD	PF02702.17	gi|564288088|ref|YP_008874287.1|	-	0.028	13.9	0.3	0.046	13.2	0.3	1.3	1	0	0	1	1	1	0	Osmosensitive	K+	channel	His	kinase	sensor	domain
Epimerase	PF01370.21	gi|564288088|ref|YP_008874287.1|	-	0.067	12.6	0.5	0.11	12.0	0.5	1.4	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
3Beta_HSD	PF01073.19	gi|564288088|ref|YP_008874287.1|	-	0.097	11.7	0.3	0.13	11.3	0.3	1.2	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
DUF948	PF06103.11	gi|564288088|ref|YP_008874287.1|	-	0.16	12.3	2.0	0.35	11.1	1.7	1.6	1	1	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
FGGY_C	PF02782.16	gi|564288089|ref|YP_008874288.1|	-	3.6e-23	82.3	0.0	5e-23	81.9	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FGGY_N	PF00370.21	gi|564288089|ref|YP_008874288.1|	-	6.3e-18	65.2	0.0	8.6e-18	64.8	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
Aldolase_II	PF00596.21	gi|564288090|ref|YP_008874289.1|	-	3e-50	170.8	0.3	3.5e-50	170.5	0.3	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
ABC_tran	PF00005.27	gi|564288091|ref|YP_008874290.1|	-	1.3e-31	109.9	0.0	2.5e-31	109.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|564288091|ref|YP_008874290.1|	-	3.1e-13	50.3	0.1	2.8e-12	47.3	0.1	2.6	2	0	0	2	2	2	1	MalK	OB	fold	domain
TOBE_2	PF08402.10	gi|564288091|ref|YP_008874290.1|	-	1.3e-10	41.3	0.3	5e-10	39.4	0.1	2.2	2	0	0	2	2	1	1	TOBE	domain
CysA_C_terminal	PF17850.1	gi|564288091|ref|YP_008874290.1|	-	7e-09	36.1	0.1	2.4e-08	34.4	0.0	2.0	2	0	0	2	2	1	1	CysA	C-terminal	regulatory	domain
AAA_21	PF13304.6	gi|564288091|ref|YP_008874290.1|	-	1.1e-08	35.3	0.0	0.00066	19.6	0.0	2.2	2	0	0	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288091|ref|YP_008874290.1|	-	0.00024	20.6	0.3	0.00057	19.4	0.3	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
RsgA_GTPase	PF03193.16	gi|564288091|ref|YP_008874290.1|	-	0.00039	20.4	0.0	0.00077	19.4	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|564288091|ref|YP_008874290.1|	-	0.00045	19.9	0.0	0.00098	18.8	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|564288091|ref|YP_008874290.1|	-	0.0027	17.9	0.0	0.017	15.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
Cytidylate_kin	PF02224.18	gi|564288091|ref|YP_008874290.1|	-	0.0036	17.1	1.0	0.048	13.4	0.7	2.5	2	1	0	2	2	2	1	Cytidylate	kinase
AAA_22	PF13401.6	gi|564288091|ref|YP_008874290.1|	-	0.0041	17.4	0.0	0.013	15.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_30	PF13604.6	gi|564288091|ref|YP_008874290.1|	-	0.01	15.5	0.1	0.018	14.8	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.6	gi|564288091|ref|YP_008874290.1|	-	0.017	14.7	0.1	0.61	9.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|564288091|ref|YP_008874290.1|	-	0.017	15.5	0.0	0.036	14.5	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA	PF00004.29	gi|564288091|ref|YP_008874290.1|	-	0.025	15.0	0.1	0.079	13.4	0.1	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_23	PF13476.6	gi|564288091|ref|YP_008874290.1|	-	0.027	15.0	0.0	0.052	14.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
TOBE	PF03459.17	gi|564288091|ref|YP_008874290.1|	-	0.027	14.8	0.0	0.1	12.9	0.0	2.0	1	0	0	1	1	1	0	TOBE	domain
DraK_HK_N	PF18092.1	gi|564288091|ref|YP_008874290.1|	-	0.046	14.1	0.6	3.4	8.2	0.1	3.2	3	0	0	3	3	3	0	DraK	Histidine	Kinase	N-terminal	domain
AAA_28	PF13521.6	gi|564288091|ref|YP_008874290.1|	-	0.06	13.6	0.0	0.12	12.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SAM_LFY	PF01698.16	gi|564288091|ref|YP_008874290.1|	-	0.064	13.2	0.0	0.15	12.0	0.0	1.6	1	0	0	1	1	1	0	Floricaula	/	Leafy	protein	SAM	domain
AAA_15	PF13175.6	gi|564288091|ref|YP_008874290.1|	-	0.076	12.7	0.0	0.14	11.8	0.0	1.5	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_18	PF13238.6	gi|564288091|ref|YP_008874290.1|	-	0.099	13.2	0.0	0.21	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF3987	PF13148.6	gi|564288091|ref|YP_008874290.1|	-	0.11	11.5	0.1	0.49	9.3	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
MMR_HSR1	PF01926.23	gi|564288091|ref|YP_008874290.1|	-	0.12	12.5	0.2	0.36	10.9	0.2	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
RNA_helicase	PF00910.22	gi|564288091|ref|YP_008874290.1|	-	0.14	12.6	0.1	0.29	11.5	0.1	1.7	1	1	0	1	1	1	0	RNA	helicase
BPD_transp_1	PF00528.22	gi|564288092|ref|YP_008874291.1|	-	3.7e-17	62.7	19.1	3.7e-17	62.7	19.1	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PMT_4TMC	PF16192.5	gi|564288092|ref|YP_008874291.1|	-	0.62	9.6	10.8	2.4	7.7	8.3	3.0	1	1	1	2	2	2	0	C-terminal	four	TMM	region	of	protein-O-mannosyltransferase
TMEMspv1-c74-12	PF11044.8	gi|564288092|ref|YP_008874291.1|	-	2.9	7.9	5.8	0.35	10.9	0.7	2.2	2	0	0	2	2	2	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
BPD_transp_1	PF00528.22	gi|564288093|ref|YP_008874292.1|	-	2.8e-18	66.3	21.4	2.8e-18	66.3	21.4	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_1	PF01547.25	gi|564288094|ref|YP_008874293.1|	-	4.1e-25	89.4	3.2	6.1e-25	88.8	3.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564288094|ref|YP_008874293.1|	-	0.013	15.3	1.0	0.023	14.5	1.0	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ADH_N	PF08240.12	gi|564288095|ref|YP_008874294.1|	-	2.5e-33	114.2	3.2	2.5e-33	114.2	3.2	1.9	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288095|ref|YP_008874294.1|	-	4.7e-21	75.1	0.0	7.5e-21	74.5	0.0	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|564288095|ref|YP_008874294.1|	-	4.4e-10	39.4	0.0	8.9e-10	38.4	0.0	1.5	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|564288095|ref|YP_008874294.1|	-	5.3e-05	24.3	0.0	9.4e-05	23.5	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
F420_oxidored	PF03807.17	gi|564288095|ref|YP_008874294.1|	-	0.00067	20.2	0.0	0.0013	19.3	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|564288095|ref|YP_008874294.1|	-	0.025	14.8	0.0	0.056	13.7	0.0	1.6	1	0	0	1	1	1	0	TrkA-N	domain
NTP_transf_3	PF12804.7	gi|564288095|ref|YP_008874294.1|	-	0.038	14.3	0.1	0.067	13.5	0.1	1.4	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Rossmann-like	PF10727.9	gi|564288095|ref|YP_008874294.1|	-	0.047	13.6	0.1	0.13	12.1	0.1	1.8	1	1	1	2	2	2	0	Rossmann-like	domain
FAD_binding_3	PF01494.19	gi|564288095|ref|YP_008874294.1|	-	0.15	11.3	0.1	0.22	10.7	0.1	1.2	1	0	0	1	1	1	0	FAD	binding	domain
IclR	PF01614.18	gi|564288096|ref|YP_008874295.1|	-	4e-29	101.1	0.0	3.9e-28	97.9	0.0	2.0	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288096|ref|YP_008874295.1|	-	8.4e-11	41.5	0.4	2.4e-10	40.1	0.1	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288096|ref|YP_008874295.1|	-	2.3e-07	30.6	0.0	3.6e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|564288096|ref|YP_008874295.1|	-	1e-05	25.4	0.0	3.3e-05	23.7	0.0	1.8	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|564288096|ref|YP_008874295.1|	-	2.6e-05	24.0	0.1	6.5e-05	22.7	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564288096|ref|YP_008874295.1|	-	7.6e-05	22.7	0.1	0.0002	21.3	0.0	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288096|ref|YP_008874295.1|	-	0.00045	19.7	0.0	0.0008	18.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564288096|ref|YP_008874295.1|	-	0.0005	19.9	0.1	0.0011	18.8	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.20	gi|564288096|ref|YP_008874295.1|	-	0.0046	17.3	0.1	0.0085	16.4	0.1	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|564288096|ref|YP_008874295.1|	-	0.0062	16.7	0.1	0.013	15.7	0.1	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.6	gi|564288096|ref|YP_008874295.1|	-	0.016	15.3	0.0	0.028	14.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
FaeA	PF04703.12	gi|564288096|ref|YP_008874295.1|	-	0.038	14.4	0.0	0.21	12.0	0.0	2.0	2	0	0	2	2	2	0	FaeA-like	protein
MarR	PF01047.22	gi|564288096|ref|YP_008874295.1|	-	0.044	13.7	0.0	0.073	13.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_10	PF04967.12	gi|564288096|ref|YP_008874295.1|	-	0.13	12.1	0.0	0.29	11.0	0.0	1.6	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HEAT_2	PF13646.6	gi|564288097|ref|YP_008874296.1|	-	1.7e-13	50.8	10.4	8e-08	32.6	1.0	3.3	1	1	2	3	3	3	3	HEAT	repeats
HEAT_EZ	PF13513.6	gi|564288097|ref|YP_008874296.1|	-	1e-08	35.5	8.6	0.016	15.7	0.2	4.8	2	1	3	5	5	5	4	HEAT-like	repeat
HEAT	PF02985.22	gi|564288097|ref|YP_008874296.1|	-	1.6e-08	34.1	1.4	0.08	13.2	0.0	5.0	5	0	0	5	5	5	2	HEAT	repeat
Cnd1	PF12717.7	gi|564288097|ref|YP_008874296.1|	-	0.0002	21.5	0.0	0.5	10.4	0.0	2.6	1	1	1	2	2	2	2	non-SMC	mitotic	condensation	complex	subunit	1
Adaptin_N	PF01602.20	gi|564288097|ref|YP_008874296.1|	-	0.0048	15.5	0.1	0.94	8.0	0.1	2.6	1	1	2	3	3	3	2	Adaptin	N	terminal	region
DZR	PF12773.7	gi|564288097|ref|YP_008874296.1|	-	0.0099	15.9	0.3	0.022	14.8	0.3	1.6	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|564288097|ref|YP_008874296.1|	-	0.011	15.5	4.7	0.02	14.6	4.7	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|564288097|ref|YP_008874296.1|	-	0.05	13.0	6.7	0.11	11.9	6.7	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
IFRD	PF05004.13	gi|564288097|ref|YP_008874296.1|	-	0.074	12.2	0.1	1.9	7.5	0.0	2.3	2	1	0	2	2	2	0	Interferon-related	developmental	regulator	(IFRD)
TPR_4	PF07721.14	gi|564288097|ref|YP_008874296.1|	-	0.41	11.4	7.9	14	6.6	0.1	4.6	4	0	0	4	4	4	0	Tetratricopeptide	repeat
HEAT_PBS	PF03130.16	gi|564288097|ref|YP_008874296.1|	-	0.81	10.5	13.9	11	7.0	0.2	5.4	4	1	0	4	4	4	0	PBS	lyase	HEAT-like	repeat
LUD_dom	PF02589.15	gi|564288098|ref|YP_008874297.1|	-	2.2e-16	60.1	0.6	3e-15	56.4	0.0	1.9	1	1	1	2	2	2	2	LUD	domain
LUD_dom	PF02589.15	gi|564288099|ref|YP_008874298.1|	-	5.4e-42	143.7	0.2	1e-41	142.8	0.2	1.5	1	0	0	1	1	1	1	LUD	domain
Fer4_8	PF13183.6	gi|564288099|ref|YP_008874298.1|	-	1.6e-08	34.9	3.0	3.5e-08	33.8	3.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564288099|ref|YP_008874298.1|	-	7e-08	32.5	3.7	0.00024	21.1	0.2	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564288099|ref|YP_008874298.1|	-	8.1e-07	29.1	3.3	2e-06	27.9	3.3	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.6	gi|564288099|ref|YP_008874298.1|	-	8.5e-07	29.4	2.1	1.6e-06	28.5	2.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564288099|ref|YP_008874298.1|	-	2e-06	28.3	5.6	4.7e-06	27.1	5.6	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|564288099|ref|YP_008874298.1|	-	0.0001	22.5	1.0	0.013	15.7	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564288099|ref|YP_008874298.1|	-	0.00016	21.3	13.8	0.00021	21.0	3.5	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564288099|ref|YP_008874298.1|	-	0.00025	21.0	2.7	0.00025	21.0	2.7	2.5	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_21	PF14697.6	gi|564288099|ref|YP_008874298.1|	-	0.00026	21.0	8.8	0.0014	18.7	8.8	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.6	gi|564288099|ref|YP_008874298.1|	-	0.0011	19.8	3.7	0.04	14.9	0.6	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.7	gi|564288099|ref|YP_008874298.1|	-	0.01	15.9	15.3	0.04	14.0	4.3	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|564288099|ref|YP_008874298.1|	-	0.03	14.8	3.2	0.03	14.8	3.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.7	gi|564288099|ref|YP_008874298.1|	-	0.041	14.8	5.9	0.041	14.8	5.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.6	gi|564288099|ref|YP_008874298.1|	-	0.052	13.3	3.4	0.1	12.4	0.2	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_22	PF17179.4	gi|564288099|ref|YP_008874298.1|	-	0.11	13.4	7.8	0.11	13.3	1.0	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF362	PF04015.12	gi|564288100|ref|YP_008874299.1|	-	0.00021	21.6	0.0	0.00041	20.6	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Lar_N	PF09861.9	gi|564288100|ref|YP_008874299.1|	-	0.00042	19.6	0.0	0.00065	18.9	0.0	1.2	1	0	0	1	1	1	1	Lactate	racemase	N-terminal	domain
DUF4147	PF13660.6	gi|564288101|ref|YP_008874300.1|	-	2.8e-70	236.4	1.1	3.8e-70	236.0	1.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.13	gi|564288101|ref|YP_008874300.1|	-	1.9e-25	89.1	7.7	1.9e-25	89.1	7.7	2.1	2	0	0	2	2	2	1	MOFRL	family
Glyco_hydro_88	PF07470.13	gi|564288102|ref|YP_008874301.1|	-	1.1e-57	195.7	0.0	1.4e-57	195.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
Glyco_hydro_127	PF07944.12	gi|564288102|ref|YP_008874301.1|	-	0.076	11.5	0.0	0.11	10.9	0.0	1.2	1	0	0	1	1	1	0	Beta-L-arabinofuranosidase,	GH127
VCBS	PF13517.6	gi|564288103|ref|YP_008874302.1|	-	9.4e-29	99.8	22.2	5.8e-10	39.6	1.9	5.5	3	2	2	5	5	5	5	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
FG-GAP	PF01839.23	gi|564288103|ref|YP_008874302.1|	-	3e-22	78.4	30.3	0.018	15.2	0.0	7.3	7	0	0	7	7	7	7	FG-GAP	repeat
TcdB_toxin_midN	PF12256.8	gi|564288103|ref|YP_008874302.1|	-	4.2e-08	32.8	7.6	0.22	10.9	0.0	6.1	5	1	2	7	7	7	3	Insecticide	toxin	TcdB	middle/N-terminal	region
PliI	PF16743.5	gi|564288103|ref|YP_008874302.1|	-	3.4e-06	26.8	5.1	6.2	6.6	0.0	6.3	3	2	3	7	7	7	2	Periplasmic	lysozyme	inhibitor	of	I-type	lysozyme
Itfg2	PF15907.5	gi|564288103|ref|YP_008874302.1|	-	5.5e-05	22.4	7.2	1.3	8.0	0.2	5.1	3	1	1	5	5	5	3	Integrin-alpha	FG-GAP	repeat-containing	protein	2
BBS2_Mid	PF14783.6	gi|564288103|ref|YP_008874302.1|	-	0.00024	21.1	2.6	3.8	7.6	0.0	5.0	5	0	0	5	5	5	2	Ciliary	BBSome	complex	subunit	2,	middle	region
UDPG_MGDP_dh_N	PF03721.14	gi|564288104|ref|YP_008874303.1|	-	2.6e-43	147.8	0.0	4.2e-43	147.1	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.19	gi|564288104|ref|YP_008874303.1|	-	3.1e-23	81.8	0.0	5.2e-23	81.1	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.15	gi|564288104|ref|YP_008874303.1|	-	9.2e-18	64.6	0.0	2.7e-17	63.1	0.0	1.8	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
F420_oxidored	PF03807.17	gi|564288104|ref|YP_008874303.1|	-	0.0036	17.8	0.0	1.7	9.3	0.0	3.3	2	1	1	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.15	gi|564288104|ref|YP_008874303.1|	-	0.0071	16.5	0.0	0.037	14.2	0.0	2.1	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.18	gi|564288104|ref|YP_008874303.1|	-	0.0076	16.1	0.0	0.012	15.6	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.16	gi|564288104|ref|YP_008874303.1|	-	0.013	15.1	0.0	0.021	14.5	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.19	gi|564288104|ref|YP_008874303.1|	-	0.014	14.8	0.0	0.088	12.2	0.0	2.2	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.6	gi|564288104|ref|YP_008874303.1|	-	0.015	15.6	0.0	1.2	9.4	0.0	2.6	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
TrkA_N	PF02254.18	gi|564288104|ref|YP_008874303.1|	-	0.023	15.0	0.1	0.18	12.1	0.0	2.5	2	1	0	2	2	2	0	TrkA-N	domain
NAD_Gly3P_dh_N	PF01210.23	gi|564288104|ref|YP_008874303.1|	-	0.09	12.8	0.0	0.63	10.0	0.0	2.4	3	0	0	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.27	gi|564288104|ref|YP_008874303.1|	-	0.17	12.5	0.0	0.72	10.4	0.0	2.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Polysacc_synt_3	PF13440.6	gi|564288105|ref|YP_008874304.1|	-	1.1e-78	264.4	3.3	1.1e-78	264.4	3.3	2.0	3	0	0	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|564288105|ref|YP_008874304.1|	-	2e-39	135.6	7.1	2e-39	135.6	7.1	3.1	3	1	1	4	4	4	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|564288105|ref|YP_008874304.1|	-	6.1e-06	26.3	16.9	6.1e-06	26.3	16.9	3.0	4	0	0	4	4	4	1	Polysaccharide	biosynthesis	C-terminal	domain
Glycos_transf_1	PF00534.20	gi|564288106|ref|YP_008874305.1|	-	1.7e-32	112.3	0.0	7.3e-32	110.3	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288106|ref|YP_008874305.1|	-	3.9e-27	95.3	0.0	6.8e-27	94.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288106|ref|YP_008874305.1|	-	1.7e-15	57.4	0.0	4.2e-15	56.2	0.0	1.6	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288106|ref|YP_008874305.1|	-	4.2e-11	43.5	0.1	7.6e-11	42.7	0.1	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288106|ref|YP_008874305.1|	-	1.7e-05	25.1	0.0	4.2e-05	23.9	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564288106|ref|YP_008874305.1|	-	0.00071	19.6	0.0	0.0011	19.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
DUF1616	PF07760.11	gi|564288300|ref|YP_008874307.1|	-	1.3e-53	182.3	1.9	1.6e-53	182.0	1.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Sulfatase	PF00884.23	gi|564288107|ref|YP_008874309.1|	-	7.7e-37	127.3	0.8	1.1e-36	126.8	0.8	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|564288107|ref|YP_008874309.1|	-	0.00028	20.6	0.7	0.0021	17.7	0.7	2.3	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|564288108|ref|YP_008874310.1|	-	0.00083	18.8	0.4	0.0011	18.4	0.4	1.2	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|564288108|ref|YP_008874310.1|	-	0.0065	16.6	0.0	0.011	15.8	0.0	1.3	1	0	0	1	1	1	1	PglZ	domain
Pectate_lyase_3	PF12708.7	gi|564288302|ref|YP_008874311.1|	-	6.7e-16	58.8	9.1	7e-15	55.4	0.2	3.6	1	1	0	3	3	3	2	Pectate	lyase	superfamily	protein
Beta_helix	PF13229.6	gi|564288302|ref|YP_008874311.1|	-	6.6e-06	26.1	12.5	0.0014	18.5	9.3	3.0	1	1	1	2	2	2	2	Right	handed	beta	helix	region
End_N_terminal	PF12218.8	gi|564288302|ref|YP_008874311.1|	-	0.026	14.2	0.2	0.069	12.9	0.2	1.7	1	0	0	1	1	1	0	N	terminal	extension	of	bacteriophage	endosialidase
Sulfatase	PF00884.23	gi|564288303|ref|YP_008874312.1|	-	0.00015	21.3	0.2	0.00019	21.0	0.2	1.1	1	0	0	1	1	1	1	Sulfatase
SCPU	PF05229.15	gi|564288304|ref|YP_008874313.1|	-	0.43	11.0	3.5	0.37	11.2	0.6	2.1	2	1	1	3	3	3	0	Spore	Coat	Protein	U	domain
Glycos_transf_2	PF00535.26	gi|564288109|ref|YP_008874315.1|	-	5.5e-28	97.9	1.0	7.9e-28	97.4	0.5	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288109|ref|YP_008874315.1|	-	7.8e-17	61.9	0.2	1.3e-16	61.3	0.2	1.3	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564288109|ref|YP_008874315.1|	-	1.1e-09	38.2	0.0	1.5e-09	37.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
TPR_2	PF07719.17	gi|564288109|ref|YP_008874315.1|	-	0.071	13.3	0.9	0.18	12.0	0.9	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Glyco_transf_64	PF09258.10	gi|564288109|ref|YP_008874315.1|	-	0.17	11.2	0.0	0.24	10.7	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	transferase	family	64	domain
Epimerase_2	PF02350.19	gi|564288110|ref|YP_008874316.1|	-	1.7e-102	342.8	0.0	2e-102	342.6	0.0	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
Glyco_transf_4	PF13439.6	gi|564288110|ref|YP_008874316.1|	-	0.073	13.1	0.0	0.17	11.9	0.0	1.7	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288110|ref|YP_008874316.1|	-	0.11	12.9	0.0	0.38	11.2	0.0	1.9	2	1	0	2	2	2	0	Glycosyl	transferase	4-like	domain
MGDG_synth	PF06925.11	gi|564288110|ref|YP_008874316.1|	-	0.22	11.6	0.0	0.44	10.6	0.0	1.5	1	0	0	1	1	1	0	Monogalactosyldiacylglycerol	(MGDG)	synthase
Glycos_transf_1	PF00534.20	gi|564288306|ref|YP_008874317.1|	-	2.6e-29	102.0	0.0	3.7e-29	101.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288306|ref|YP_008874317.1|	-	1.6e-23	83.6	0.0	3.6e-23	82.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288306|ref|YP_008874317.1|	-	1.1e-10	41.7	0.0	3.1e-10	40.3	0.0	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288306|ref|YP_008874317.1|	-	4.1e-07	30.6	0.6	1.4e-05	25.6	0.0	2.8	3	0	0	3	3	3	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288306|ref|YP_008874317.1|	-	7.7e-07	29.4	0.0	2.2e-06	28.0	0.0	1.7	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Hepar_II_III	PF07940.13	gi|564288307|ref|YP_008874318.1|	-	5.8e-36	124.3	2.1	1.4e-35	123.1	2.1	1.6	1	0	0	1	1	1	1	Heparinase	II/III-like	protein
Hepar_II_III_N	PF16889.5	gi|564288307|ref|YP_008874318.1|	-	1.5e-19	70.5	0.0	2.2e-19	69.9	0.0	1.1	1	0	0	1	1	1	1	Heparinase	II/III	N-terminus
Glyco_trans_1_4	PF13692.6	gi|564288111|ref|YP_008874319.1|	-	1.4e-19	70.9	0.0	2.4e-19	70.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|564288111|ref|YP_008874319.1|	-	2.1e-16	60.8	0.8	3.4e-16	60.1	0.8	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glycos_transf_1	PF00534.20	gi|564288111|ref|YP_008874319.1|	-	2.7e-15	56.3	0.0	3.9e-15	55.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288111|ref|YP_008874319.1|	-	5.3e-11	42.8	0.1	1.7e-10	41.2	0.1	1.8	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|564288111|ref|YP_008874319.1|	-	1.2e-05	25.6	0.0	2.7e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_2	PF00535.26	gi|564288112|ref|YP_008874320.1|	-	7.1e-09	35.7	0.0	2.3e-08	34.1	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.9	gi|564288112|ref|YP_008874320.1|	-	1.1e-07	31.6	0.0	0.0073	15.8	0.0	2.2	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288112|ref|YP_008874320.1|	-	5.5e-06	26.4	0.0	0.03	14.2	0.0	2.3	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.6	gi|564288112|ref|YP_008874320.1|	-	0.00048	19.6	0.0	0.024	14.1	0.0	2.2	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_transf_7C	PF02709.14	gi|564288112|ref|YP_008874320.1|	-	0.00049	19.7	0.0	0.00079	19.0	0.0	1.3	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_trans_2_3	PF13632.6	gi|564288112|ref|YP_008874320.1|	-	0.00079	19.4	0.0	0.0026	17.7	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
PTS_IIB	PF02302.17	gi|564288113|ref|YP_008874321.1|	-	5.8e-17	62.2	1.6	8.1e-17	61.7	1.6	1.2	1	0	0	1	1	1	1	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
PEP-utilizers_C	PF02896.18	gi|564288114|ref|YP_008874322.1|	-	7.3e-106	353.6	0.0	9.8e-106	353.1	0.0	1.1	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilisers_N	PF05524.13	gi|564288114|ref|YP_008874322.1|	-	3e-24	85.4	0.2	3e-24	85.4	0.2	2.9	4	0	0	4	4	4	1	PEP-utilising	enzyme,	N-terminal
PEP-utilizers	PF00391.23	gi|564288114|ref|YP_008874322.1|	-	4.3e-22	77.6	0.4	8.5e-22	76.7	0.4	1.5	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
PTS-HPr	PF00381.19	gi|564288115|ref|YP_008874323.1|	-	5.1e-23	81.1	0.1	5.7e-23	81.0	0.1	1.0	1	0	0	1	1	1	1	PTS	HPr	component	phosphorylation	site
PTS_EIIA_2	PF00359.22	gi|564288116|ref|YP_008874324.1|	-	8.5e-35	119.8	0.0	9.6e-35	119.6	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	2
PTS_EIIC	PF02378.18	gi|564288117|ref|YP_008874325.1|	-	3.7e-21	75.5	37.7	3.7e-21	75.5	37.7	1.9	2	0	0	2	2	2	2	Phosphotransferase	system,	EIIC
Seryl_tRNA_N	PF02403.22	gi|564288118|ref|YP_008874326.1|	-	1.6e-06	28.3	44.9	0.0012	19.0	11.1	6.0	2	2	4	6	6	6	3	Seryl-tRNA	synthetase	N-terminal	domain
DUF812	PF05667.11	gi|564288118|ref|YP_008874326.1|	-	3.8e-06	26.1	29.9	0.00013	21.0	6.1	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF812)
Spc7	PF08317.11	gi|564288118|ref|YP_008874326.1|	-	7.2e-06	25.1	48.9	0.00012	21.1	13.3	4.3	2	2	1	3	3	3	2	Spc7	kinetochore	protein
FlaC_arch	PF05377.11	gi|564288118|ref|YP_008874326.1|	-	8.7e-06	26.0	35.7	0.29	11.6	0.2	7.0	5	2	1	6	6	6	4	Flagella	accessory	protein	C	(FlaC)
TPR_MLP1_2	PF07926.12	gi|564288118|ref|YP_008874326.1|	-	1.3e-05	25.3	43.7	0.0098	16.0	12.7	4.8	2	2	2	4	4	4	2	TPR/MLP1/MLP2-like	protein
HMMR_N	PF15905.5	gi|564288118|ref|YP_008874326.1|	-	2.5e-05	23.9	33.5	0.0028	17.2	14.7	2.5	2	0	0	2	2	2	2	Hyaluronan	mediated	motility	receptor	N-terminal
EzrA	PF06160.12	gi|564288118|ref|YP_008874326.1|	-	0.00015	20.1	34.6	0.0012	17.2	15.0	2.7	2	1	0	2	2	2	2	Septation	ring	formation	regulator,	EzrA
Atg14	PF10186.9	gi|564288118|ref|YP_008874326.1|	-	0.00021	20.5	34.2	0.0013	17.9	2.1	3.7	2	2	2	4	4	4	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
GAS	PF13851.6	gi|564288118|ref|YP_008874326.1|	-	0.0005	19.5	36.4	0.038	13.3	11.4	3.8	2	2	1	3	3	3	2	Growth-arrest	specific	micro-tubule	binding
FapA	PF03961.13	gi|564288118|ref|YP_008874326.1|	-	0.0005	18.8	23.6	0.019	13.6	3.7	3.8	1	1	1	3	3	3	2	Flagellar	Assembly	Protein	A
Fib_alpha	PF08702.10	gi|564288118|ref|YP_008874326.1|	-	0.0013	18.9	28.0	1.2	9.3	4.4	4.4	4	0	0	4	4	4	2	Fibrinogen	alpha/beta	chain	family
AAA_23	PF13476.6	gi|564288118|ref|YP_008874326.1|	-	0.0017	18.9	11.5	0.0017	18.9	11.5	4.1	1	1	1	2	2	1	1	AAA	domain
NPV_P10	PF05531.12	gi|564288118|ref|YP_008874326.1|	-	0.0028	18.1	33.4	2.1	8.9	2.6	7.1	3	3	3	6	6	6	2	Nucleopolyhedrovirus	P10	protein
Golgin_A5	PF09787.9	gi|564288118|ref|YP_008874326.1|	-	0.0049	16.4	51.1	0.094	12.2	14.8	4.1	1	1	3	4	4	4	2	Golgin	subfamily	A	member	5
BLOC1_2	PF10046.9	gi|564288118|ref|YP_008874326.1|	-	0.0065	16.7	32.1	3.6	8.0	0.5	6.7	3	2	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Fez1	PF06818.15	gi|564288118|ref|YP_008874326.1|	-	0.0076	16.7	42.7	0.79	10.1	17.7	3.6	1	1	2	3	3	3	2	Fez1
AAA_13	PF13166.6	gi|564288118|ref|YP_008874326.1|	-	0.017	13.8	31.9	0.048	12.3	14.3	2.3	1	1	1	2	2	2	0	AAA	domain
Baculo_PEP_C	PF04513.12	gi|564288118|ref|YP_008874326.1|	-	0.06	13.4	27.8	0.15	12.1	2.4	5.4	2	2	2	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DivIC	PF04977.15	gi|564288118|ref|YP_008874326.1|	-	0.081	12.7	57.7	0.051	13.4	1.5	8.1	2	2	3	7	7	7	0	Septum	formation	initiator
DHR10	PF18595.1	gi|564288118|ref|YP_008874326.1|	-	0.11	12.6	66.6	0.022	14.8	12.8	5.6	2	2	3	5	5	4	0	Designed	helical	repeat	protein	10	domain
kleA_kleC	PF17383.2	gi|564288118|ref|YP_008874326.1|	-	0.13	12.6	35.6	0.041	14.2	2.9	5.7	3	2	3	6	6	6	0	Uncharacterized	KorC	regulated	protein	A
IFT57	PF10498.9	gi|564288118|ref|YP_008874326.1|	-	0.13	11.2	31.0	0.028	13.4	5.6	3.9	2	1	1	4	4	4	0	Intra-flagellar	transport	protein	57
HemX	PF04375.14	gi|564288118|ref|YP_008874326.1|	-	0.16	11.2	27.0	0.081	12.2	1.6	4.1	2	2	3	5	5	5	0	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
FUSC	PF04632.12	gi|564288118|ref|YP_008874326.1|	-	0.17	10.4	38.0	0.49	8.9	15.5	2.6	1	1	2	3	3	3	0	Fusaric	acid	resistance	protein	family
TMF_TATA_bd	PF12325.8	gi|564288118|ref|YP_008874326.1|	-	0.17	12.1	52.5	0.34	11.2	7.0	4.8	2	2	2	4	4	4	0	TATA	element	modulatory	factor	1	TATA	binding
DUF1664	PF07889.12	gi|564288118|ref|YP_008874326.1|	-	0.22	11.5	32.3	1.1	9.3	3.3	5.4	1	1	3	5	5	5	0	Protein	of	unknown	function	(DUF1664)
COG2	PF06148.11	gi|564288118|ref|YP_008874326.1|	-	0.3	11.2	29.3	2.4	8.3	0.5	5.3	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Shugoshin_N	PF07558.11	gi|564288118|ref|YP_008874326.1|	-	0.32	10.9	9.5	0.58	10.1	0.2	4.1	4	0	0	4	4	3	0	Shugoshin	N-terminal	coiled-coil	region
STAT_alpha	PF01017.20	gi|564288118|ref|YP_008874326.1|	-	0.34	10.8	28.1	1.6	8.6	4.9	3.5	2	2	1	3	3	3	0	STAT	protein,	all-alpha	domain
DUF4763	PF15960.5	gi|564288118|ref|YP_008874326.1|	-	0.35	10.2	30.0	2.7	7.3	1.2	4.7	3	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4763)
DUF4407	PF14362.6	gi|564288118|ref|YP_008874326.1|	-	0.4	10.0	40.5	1.8	7.8	13.7	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
CENP-F_leu_zip	PF10473.9	gi|564288118|ref|YP_008874326.1|	-	0.4	10.7	53.0	2	8.5	13.6	5.6	3	2	1	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
APG6_N	PF17675.1	gi|564288118|ref|YP_008874326.1|	-	0.4	11.2	64.4	1	9.9	7.0	5.3	2	2	3	5	5	5	0	Apg6	coiled-coil	region
ATG16	PF08614.11	gi|564288118|ref|YP_008874326.1|	-	0.46	10.7	62.0	0.062	13.5	17.5	4.3	1	1	2	4	4	4	0	Autophagy	protein	16	(ATG16)
Retrotrans_gag	PF03732.17	gi|564288118|ref|YP_008874326.1|	-	0.47	10.8	0.1	0.47	10.8	0.1	3.9	3	2	2	5	5	4	0	Retrotransposon	gag	protein
ERM	PF00769.19	gi|564288118|ref|YP_008874326.1|	-	0.53	10.0	52.0	0.11	12.3	15.2	3.5	2	2	1	3	3	3	0	Ezrin/radixin/moesin	family
Prefoldin	PF02996.17	gi|564288118|ref|YP_008874326.1|	-	0.59	10.1	34.6	0.9	9.5	0.4	7.3	3	2	4	7	7	7	0	Prefoldin	subunit
Spectrin	PF00435.21	gi|564288118|ref|YP_008874326.1|	-	0.7	10.4	37.8	0.22	12.0	2.2	5.8	2	2	4	6	6	6	0	Spectrin	repeat
Occludin_ELL	PF07303.13	gi|564288118|ref|YP_008874326.1|	-	0.75	10.6	18.9	2.5	8.9	0.5	5.3	3	2	2	5	5	5	0	Occludin	homology	domain
KASH_CCD	PF14662.6	gi|564288118|ref|YP_008874326.1|	-	0.81	9.5	43.0	2.6	7.8	20.6	3.6	2	2	1	3	3	3	0	Coiled-coil	region	of	CCDC155	or	KASH
TMF_DNA_bd	PF12329.8	gi|564288118|ref|YP_008874326.1|	-	0.88	9.6	36.3	4.1	7.5	1.2	6.0	3	2	2	6	6	6	0	TATA	element	modulatory	factor	1	DNA	binding
Filament	PF00038.21	gi|564288118|ref|YP_008874326.1|	-	0.95	9.0	52.8	2.1	7.9	6.9	3.9	2	2	1	3	3	3	0	Intermediate	filament	protein
Zw10	PF06248.13	gi|564288118|ref|YP_008874326.1|	-	0.99	7.9	22.2	0.017	13.7	4.1	3.3	2	1	1	3	3	3	0	Centromere/kinetochore	Zw10
DUF745	PF05335.13	gi|564288118|ref|YP_008874326.1|	-	1.1	8.9	10.3	0.59	9.8	0.8	3.1	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF745)
FliD_N	PF02465.18	gi|564288118|ref|YP_008874326.1|	-	1.2	9.9	9.5	50	4.7	1.5	4.8	3	2	1	4	4	3	0	Flagellar	hook-associated	protein	2	N-terminus
MAD	PF05557.13	gi|564288118|ref|YP_008874326.1|	-	1.2	7.4	45.3	0.59	8.4	17.3	2.7	2	2	0	2	2	2	0	Mitotic	checkpoint	protein
DUF4201	PF13870.6	gi|564288118|ref|YP_008874326.1|	-	1.4	8.6	39.3	0.64	9.7	5.7	4.3	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4201)
YabA	PF06156.13	gi|564288118|ref|YP_008874326.1|	-	2.5	8.8	31.8	3.4	8.4	1.7	5.2	2	2	2	4	4	4	0	Initiation	control	protein	YabA
DUF724	PF05266.14	gi|564288118|ref|YP_008874326.1|	-	2.9	7.7	32.6	0.82	9.5	6.7	4.0	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF724)
DUF3584	PF12128.8	gi|564288118|ref|YP_008874326.1|	-	3	5.2	47.7	0.75	7.2	20.6	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
Laminin_II	PF06009.12	gi|564288118|ref|YP_008874326.1|	-	3.4	7.7	30.3	0.15	12.1	5.5	3.9	2	2	1	3	3	3	0	Laminin	Domain	II
Sec34	PF04136.15	gi|564288118|ref|YP_008874326.1|	-	4.5	7.1	24.1	5.2	6.9	3.7	4.9	2	2	2	4	4	4	0	Sec34-like	family
DUF2203	PF09969.9	gi|564288118|ref|YP_008874326.1|	-	4.9	7.9	32.9	0.27	11.9	2.0	4.8	2	2	3	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
LXG	PF04740.12	gi|564288118|ref|YP_008874326.1|	-	5	6.8	25.6	0.5	10.1	2.0	4.7	2	1	1	3	3	3	0	LXG	domain	of	WXG	superfamily
Mod_r	PF07200.13	gi|564288118|ref|YP_008874326.1|	-	6.6	6.8	36.7	2.9	8.0	6.8	4.5	2	2	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
TBK1_CCD1	PF18394.1	gi|564288118|ref|YP_008874326.1|	-	6.8	6.2	24.5	0.67	9.5	5.3	3.8	2	1	1	3	3	3	0	TANK-binding	kinase	1	coiled-coil	domain	1
DUF3153	PF11353.8	gi|564288118|ref|YP_008874326.1|	-	7.6	6.1	9.2	0.3	10.6	1.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3153)
ABC_tran_CTD	PF16326.5	gi|564288118|ref|YP_008874326.1|	-	7.6	6.9	52.2	9.6	6.5	0.1	7.6	3	2	5	8	8	8	0	ABC	transporter	C-terminal	domain
Baculo_p24	PF05073.12	gi|564288118|ref|YP_008874326.1|	-	9.2	6.0	11.8	2.4	7.9	1.3	3.1	2	1	0	2	2	2	0	Baculovirus	P24	capsid	protein
Bacillus_HBL	PF05791.11	gi|564288118|ref|YP_008874326.1|	-	9.4	6.0	18.9	1.5	8.7	4.6	4.0	3	1	2	5	5	5	0	Bacillus	haemolytic	enterotoxin	(HBL)
FlxA	PF14282.6	gi|564288118|ref|YP_008874326.1|	-	9.4	6.3	23.4	0.58	10.2	0.5	4.6	2	2	1	4	4	3	0	FlxA-like	protein
SCAB-ABD	PF16711.5	gi|564288119|ref|YP_008874327.1|	-	0.029	14.3	0.2	0.081	12.8	0.2	1.8	1	0	0	1	1	1	0	Actin-binding	domain	of	plant-specific	actin-binding	protein
zinc_ribbon_4	PF13717.6	gi|564288119|ref|YP_008874327.1|	-	0.054	13.4	0.0	0.098	12.6	0.0	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
DUF2951	PF11166.8	gi|564288121|ref|YP_008874329.1|	-	0.077	13.2	0.0	0.15	12.3	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2951)
DUF357	PF04010.13	gi|564288121|ref|YP_008874329.1|	-	0.1	12.7	0.1	0.52	10.4	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF357)
GCV_T	PF01571.21	gi|564288122|ref|YP_008874330.1|	-	1.2e-62	211.6	0.1	2e-62	210.9	0.1	1.4	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|564288122|ref|YP_008874330.1|	-	2.2e-43	149.2	0.1	2.2e-43	149.2	0.1	2.2	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
FAO_M	PF16350.5	gi|564288122|ref|YP_008874330.1|	-	6.8e-19	67.9	0.2	2.1e-18	66.4	0.2	1.9	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
GCV_T_C	PF08669.11	gi|564288122|ref|YP_008874330.1|	-	1.3e-10	41.1	0.0	3.1e-10	39.8	0.0	1.7	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
Pyr_redox_2	PF07992.14	gi|564288122|ref|YP_008874330.1|	-	6.7e-06	25.5	0.0	0.024	13.9	0.0	2.4	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288122|ref|YP_008874330.1|	-	2e-05	24.0	0.0	0.0086	15.4	0.0	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
SoxG	PF04268.12	gi|564288122|ref|YP_008874330.1|	-	0.00014	22.0	0.0	0.00025	21.2	0.0	1.4	1	0	0	1	1	1	1	Sarcosine	oxidase,	gamma	subunit	family
NAD_binding_9	PF13454.6	gi|564288122|ref|YP_008874330.1|	-	0.00047	20.2	0.9	0.94	9.5	0.1	3.2	3	0	0	3	3	3	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.6	gi|564288122|ref|YP_008874330.1|	-	0.00086	19.5	0.0	0.0033	17.6	0.0	2.0	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.24	gi|564288122|ref|YP_008874330.1|	-	0.0019	17.3	0.1	0.0032	16.6	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.14	gi|564288122|ref|YP_008874330.1|	-	0.016	13.9	0.0	0.034	12.9	0.0	1.5	2	0	0	2	2	2	0	HI0933-like	protein
AlaDh_PNT_C	PF01262.21	gi|564288122|ref|YP_008874330.1|	-	0.17	11.2	0.1	0.51	9.6	0.0	1.7	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
ETF	PF01012.21	gi|564288123|ref|YP_008874331.1|	-	7.5e-32	110.7	2.2	1.1e-31	110.2	2.2	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.19	gi|564288124|ref|YP_008874332.1|	-	4.3e-33	113.2	1.0	4.3e-33	113.2	1.0	2.0	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.21	gi|564288124|ref|YP_008874332.1|	-	2.7e-27	95.8	2.4	3e-27	95.7	1.6	1.5	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
Cupin_2	PF07883.11	gi|564288125|ref|YP_008874333.1|	-	0.0012	18.5	3.6	0.0017	18.1	3.6	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_7	PF12973.7	gi|564288125|ref|YP_008874333.1|	-	0.025	14.5	0.1	0.051	13.5	0.1	1.5	1	1	1	2	2	2	0	ChrR	Cupin-like	domain
FTCD_C	PF04961.12	gi|564288126|ref|YP_008874334.1|	-	2.8e-42	144.6	7.2	3.5e-42	144.2	7.2	1.1	1	0	0	1	1	1	1	Formiminotransferase-cyclodeaminase
DUF3995	PF13160.6	gi|564288126|ref|YP_008874334.1|	-	0.12	12.7	3.5	0.3	11.5	1.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3995)
MccV	PF17508.2	gi|564288126|ref|YP_008874334.1|	-	0.23	12.0	5.1	0.14	12.7	0.7	2.2	2	0	0	2	2	2	0	Microcin	V	bacteriocin
FTHFS	PF01268.19	gi|564288127|ref|YP_008874335.1|	-	7.1e-240	796.9	0.0	8e-240	796.7	0.0	1.0	1	0	0	1	1	1	1	Formate--tetrahydrofolate	ligase
Pterin_bind	PF00809.22	gi|564288128|ref|YP_008874336.1|	-	2.5e-81	272.9	0.8	4.3e-81	272.2	0.8	1.4	1	0	0	1	1	1	1	Pterin	binding	enzyme
Mur_ligase_M	PF08245.12	gi|564288128|ref|YP_008874336.1|	-	5.6e-12	46.0	0.0	1.3e-11	44.9	0.0	1.7	1	1	0	1	1	1	1	Mur	ligase	middle	domain
Mur_ligase_C	PF02875.21	gi|564288128|ref|YP_008874336.1|	-	1.7e-06	28.2	0.0	5.5e-06	26.6	0.0	1.9	1	0	0	1	1	1	1	Mur	ligase	family,	glutamate	ligase	domain
TPP_enzyme_N	PF02776.18	gi|564288128|ref|YP_008874336.1|	-	0.021	14.5	0.3	0.073	12.7	0.3	1.9	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
FixQ	PF05545.11	gi|564288129|ref|YP_008874337.1|	-	0.069	13.1	0.3	0.1	12.6	0.3	1.2	1	0	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Lar_restr_allev	PF14354.6	gi|564288130|ref|YP_008874338.1|	-	0.0028	18.0	9.0	0.0034	17.7	0.7	2.9	2	1	1	3	3	3	1	Restriction	alleviation	protein	Lar
OrfB_Zn_ribbon	PF07282.11	gi|564288130|ref|YP_008874338.1|	-	0.0034	17.3	5.0	0.34	10.9	0.2	2.4	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
zf-piccolo	PF05715.13	gi|564288130|ref|YP_008874338.1|	-	0.011	15.9	0.4	0.011	15.9	0.4	2.2	2	0	0	2	2	2	0	Piccolo	Zn-finger
Zn_Tnp_IS91	PF14319.6	gi|564288130|ref|YP_008874338.1|	-	0.018	15.1	0.8	0.018	15.1	0.8	1.9	2	0	0	2	2	2	0	Transposase	zinc-binding	domain
HypA	PF01155.19	gi|564288130|ref|YP_008874338.1|	-	0.039	14.0	7.6	0.33	11.0	3.1	2.7	1	1	1	2	2	2	0	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc-ribbons_6	PF07191.12	gi|564288130|ref|YP_008874338.1|	-	0.05	13.6	7.6	0.59	10.2	4.6	2.2	1	1	1	2	2	2	0	zinc-ribbons
zf_Rg	PF17915.1	gi|564288130|ref|YP_008874338.1|	-	0.35	10.3	2.3	0.29	10.5	0.2	1.9	1	1	1	2	2	2	0	Reverse	gyrase	zinc	finger
IBR	PF01485.21	gi|564288130|ref|YP_008874338.1|	-	0.43	10.9	10.2	8.2	6.7	4.5	2.3	1	1	1	2	2	2	0	IBR	domain,	a	half	RING-finger	domain
zinc_ribbon_15	PF17032.5	gi|564288130|ref|YP_008874338.1|	-	0.45	11.3	4.8	28	5.6	4.8	2.4	1	1	1	2	2	2	0	zinc-ribbon	family
DZR	PF12773.7	gi|564288130|ref|YP_008874338.1|	-	0.48	10.5	9.1	4.1	7.5	1.8	2.4	1	1	1	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|564288130|ref|YP_008874338.1|	-	0.53	9.8	6.3	2.1	7.9	0.7	3.0	3	0	0	3	3	3	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.6	gi|564288130|ref|YP_008874338.1|	-	0.64	10.0	8.2	36	4.4	0.3	4.0	4	0	0	4	4	4	0	zinc-ribbon	domain
TRAF6_Z2	PF18048.1	gi|564288130|ref|YP_008874338.1|	-	0.77	9.9	4.3	2.8	8.1	0.1	2.8	3	0	0	3	3	3	0	TNF	receptor-associated	factor	6	zinc	finger	2
YacG	PF03884.14	gi|564288130|ref|YP_008874338.1|	-	1.2	8.9	8.8	8.9	6.1	0.6	3.5	3	1	0	3	3	3	0	DNA	gyrase	inhibitor	YacG
zf_UBZ	PF18439.1	gi|564288130|ref|YP_008874338.1|	-	4.1	7.1	10.4	7.2	6.3	0.1	3.9	4	0	0	4	4	4	0	Ubiquitin-Binding	Zinc	Finger
Anti-TRAP	PF15777.5	gi|564288130|ref|YP_008874338.1|	-	6.2	6.9	10.7	1.1	9.2	3.0	2.9	2	2	1	3	3	3	0	Tryptophan	RNA-binding	attenuator	protein	inhibitory	protein
zf-C3HC4_3	PF13920.6	gi|564288130|ref|YP_008874338.1|	-	6.5	6.7	9.3	9.4	6.2	0.0	3.2	3	1	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C4_Topoisom	PF01396.19	gi|564288130|ref|YP_008874338.1|	-	9	6.2	8.5	9.4	6.1	0.0	3.3	4	0	0	4	4	4	0	Topoisomerase	DNA	binding	C4	zinc	finger
MFS_1	PF07690.16	gi|564288131|ref|YP_008874339.1|	-	0.01	14.8	13.1	0.01	14.8	13.1	2.0	1	1	1	2	2	2	0	Major	Facilitator	Superfamily
BCCT	PF02028.17	gi|564288132|ref|YP_008874340.1|	-	6.1e-179	595.5	45.5	7e-179	595.3	45.5	1.0	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
Trp_oprn_chp	PF09534.10	gi|564288132|ref|YP_008874340.1|	-	0.53	10.1	0.0	0.53	10.1	0.0	3.2	3	0	0	3	3	3	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
TMEM72	PF16054.5	gi|564288133|ref|YP_008874341.1|	-	0.081	12.6	1.0	0.082	12.6	1.0	1.0	1	0	0	1	1	1	0	Transmembrane	protein	family	72
Usp	PF00582.26	gi|564288134|ref|YP_008874342.1|	-	4.5e-30	105.0	0.0	5.5e-30	104.7	0.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|564288134|ref|YP_008874342.1|	-	0.0082	15.6	0.2	0.01	15.3	0.2	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
PALP	PF00291.25	gi|564288135|ref|YP_008874343.1|	-	4.7e-78	262.6	5.7	6.4e-78	262.1	5.7	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.25	gi|564288135|ref|YP_008874343.1|	-	1.4e-07	31.1	0.4	1.4e-07	31.1	0.4	2.0	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.6	gi|564288135|ref|YP_008874343.1|	-	9.2e-06	26.2	1.0	2e-05	25.1	0.1	2.1	2	0	0	2	2	2	1	ACT	domain
ACT_6	PF13740.6	gi|564288135|ref|YP_008874343.1|	-	0.017	15.1	0.0	0.037	14.0	0.0	1.6	1	0	0	1	1	1	0	ACT	domain
GCV_T	PF01571.21	gi|564288136|ref|YP_008874344.1|	-	1.9e-76	256.8	0.0	2.6e-76	256.4	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|564288136|ref|YP_008874344.1|	-	2.1e-38	132.8	1.7	5.4e-38	131.5	1.5	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.11	gi|564288136|ref|YP_008874344.1|	-	7.4e-17	61.1	0.2	2.2e-16	59.6	0.1	1.9	2	0	0	2	2	2	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAO_M	PF16350.5	gi|564288136|ref|YP_008874344.1|	-	3.9e-13	49.5	0.2	1e-12	48.1	0.2	1.8	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
NAD_binding_8	PF13450.6	gi|564288136|ref|YP_008874344.1|	-	1.7e-05	25.0	0.1	6.8e-05	23.0	0.1	2.1	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
SoxG	PF04268.12	gi|564288136|ref|YP_008874344.1|	-	2.7e-05	24.3	0.0	0.00048	20.3	0.0	2.3	1	1	0	2	2	2	1	Sarcosine	oxidase,	gamma	subunit	family
FAD_binding_2	PF00890.24	gi|564288136|ref|YP_008874344.1|	-	5.1e-05	22.5	0.3	9.8e-05	21.6	0.3	1.6	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288136|ref|YP_008874344.1|	-	0.00019	20.7	0.1	0.0022	17.3	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|564288136|ref|YP_008874344.1|	-	0.00085	19.8	0.4	0.0063	17.0	0.4	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288136|ref|YP_008874344.1|	-	0.001	18.4	0.1	0.02	14.2	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564288136|ref|YP_008874344.1|	-	0.0014	18.3	0.0	0.0026	17.4	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
ThiF	PF00899.21	gi|564288136|ref|YP_008874344.1|	-	0.0037	16.7	0.0	0.0066	15.8	0.0	1.3	1	0	0	1	1	1	1	ThiF	family
GMC_oxred_N	PF00732.19	gi|564288136|ref|YP_008874344.1|	-	0.0082	15.5	0.0	0.015	14.7	0.0	1.4	1	0	0	1	1	1	1	GMC	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564288136|ref|YP_008874344.1|	-	0.038	13.0	0.5	0.068	12.2	0.5	1.4	1	0	0	1	1	1	0	Lycopene	cyclase	protein
HI0933_like	PF03486.14	gi|564288136|ref|YP_008874344.1|	-	0.056	12.1	0.1	2.1	6.9	0.2	2.2	2	0	0	2	2	2	0	HI0933-like	protein
Shikimate_DH	PF01488.20	gi|564288136|ref|YP_008874344.1|	-	0.071	13.2	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
TrkA_N	PF02254.18	gi|564288136|ref|YP_008874344.1|	-	0.082	13.2	0.1	0.19	12.0	0.1	1.6	1	0	0	1	1	1	0	TrkA-N	domain
Thi4	PF01946.17	gi|564288136|ref|YP_008874344.1|	-	0.087	12.1	0.1	0.17	11.1	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
NAD_binding_9	PF13454.6	gi|564288136|ref|YP_008874344.1|	-	0.11	12.4	0.7	9.1	6.3	0.3	2.5	2	0	0	2	2	2	0	FAD-NAD(P)-binding
GCV_T	PF01571.21	gi|564288137|ref|YP_008874345.1|	-	2.5e-81	272.9	0.1	3.6e-81	272.3	0.1	1.3	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
DAO	PF01266.24	gi|564288137|ref|YP_008874345.1|	-	2.1e-50	172.3	0.8	4.9e-50	171.1	0.8	1.7	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GCV_T_C	PF08669.11	gi|564288137|ref|YP_008874345.1|	-	8e-15	54.5	0.0	2.5e-14	53.0	0.0	1.9	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
FAO_M	PF16350.5	gi|564288137|ref|YP_008874345.1|	-	2.7e-13	50.0	0.4	7.5e-13	48.6	0.4	1.8	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase	central	domain
SoxG	PF04268.12	gi|564288137|ref|YP_008874345.1|	-	2.5e-06	27.7	0.0	4.8e-06	26.8	0.0	1.5	1	0	0	1	1	1	1	Sarcosine	oxidase,	gamma	subunit	family
NAD_binding_8	PF13450.6	gi|564288137|ref|YP_008874345.1|	-	3.5e-05	24.0	0.1	0.00016	21.8	0.0	2.3	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.27	gi|564288137|ref|YP_008874345.1|	-	3.6e-05	24.2	0.3	0.0047	17.4	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288137|ref|YP_008874345.1|	-	4.1e-05	22.9	0.3	4.1e-05	22.9	0.3	2.1	3	0	0	3	3	3	1	FAD	binding	domain
Pyr_redox_2	PF07992.14	gi|564288137|ref|YP_008874345.1|	-	0.00013	21.3	0.7	0.0031	16.8	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|564288137|ref|YP_008874345.1|	-	0.0054	17.0	0.1	0.055	13.7	0.0	2.4	2	0	0	2	2	2	1	TrkA-N	domain
ThiF	PF00899.21	gi|564288137|ref|YP_008874345.1|	-	0.007	15.7	0.1	0.016	14.6	0.1	1.5	1	0	0	1	1	1	1	ThiF	family
Pyr_redox_3	PF13738.6	gi|564288137|ref|YP_008874345.1|	-	0.016	14.5	0.6	0.3	10.3	0.3	2.3	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.16	gi|564288137|ref|YP_008874345.1|	-	0.023	14.4	0.1	0.044	13.4	0.1	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Lycopene_cycl	PF05834.12	gi|564288137|ref|YP_008874345.1|	-	0.037	13.1	2.5	0.19	10.8	0.2	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
GMC_oxred_N	PF00732.19	gi|564288137|ref|YP_008874345.1|	-	0.046	13.1	0.0	0.084	12.2	0.0	1.4	1	0	0	1	1	1	0	GMC	oxidoreductase
NAD_binding_9	PF13454.6	gi|564288137|ref|YP_008874345.1|	-	0.049	13.6	0.4	8.1	6.4	0.0	3.2	3	0	0	3	3	3	0	FAD-NAD(P)-binding
HI0933_like	PF03486.14	gi|564288137|ref|YP_008874345.1|	-	0.066	11.9	0.2	0.74	8.4	0.0	2.0	2	0	0	2	2	2	0	HI0933-like	protein
AstE_AspA	PF04952.14	gi|564288138|ref|YP_008874346.1|	-	1.6e-41	142.3	0.1	1.8e-41	142.1	0.1	1.0	1	0	0	1	1	1	1	Succinylglutamate	desuccinylase	/	Aspartoacylase	family
ATP-synt_ab_Xtn	PF16886.5	gi|564288138|ref|YP_008874346.1|	-	0.0016	18.3	0.0	0.0033	17.3	0.0	1.6	1	0	0	1	1	1	1	ATPsynthase	alpha/beta	subunit	N-term	extension
MTHFR	PF02219.17	gi|564288140|ref|YP_008874348.1|	-	1.6e-13	50.7	0.0	3.6e-13	49.5	0.0	1.6	1	1	0	1	1	1	1	Methylenetetrahydrofolate	reductase
DUF1611_N	PF17396.2	gi|564288140|ref|YP_008874348.1|	-	0.081	13.2	0.0	0.16	12.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1611_N)	Rossmann-like	domain
GcpE	PF04551.14	gi|564288140|ref|YP_008874348.1|	-	0.14	11.2	0.0	0.39	9.8	0.0	1.6	2	0	0	2	2	2	0	GcpE	protein
GCV_T	PF01571.21	gi|564288141|ref|YP_008874349.1|	-	4.3e-47	160.6	0.0	5.7e-47	160.2	0.0	1.1	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.11	gi|564288141|ref|YP_008874349.1|	-	0.00014	21.7	0.0	0.00034	20.5	0.0	1.8	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
DHFR_1	PF00186.19	gi|564288142|ref|YP_008874350.1|	-	6e-50	169.1	0.0	7.1e-50	168.8	0.0	1.0	1	0	0	1	1	1	1	Dihydrofolate	reductase
TctA	PF01970.16	gi|564288143|ref|YP_008874351.1|	-	0.0032	16.3	1.9	0.0033	16.2	1.9	1.0	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctA	family
Phage_holin_3_6	PF07332.11	gi|564288143|ref|YP_008874351.1|	-	0.18	11.8	4.0	0.22	11.5	4.0	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
HTH_10	PF04967.12	gi|564288144|ref|YP_008874352.1|	-	1e-16	60.4	0.0	1.7e-16	59.7	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|564288144|ref|YP_008874352.1|	-	0.00032	20.6	0.0	0.00044	20.1	0.0	1.2	1	0	0	1	1	1	1	GAF	and	HTH_10	associated	domain
Sigma70_r4	PF04545.16	gi|564288144|ref|YP_008874352.1|	-	0.0053	16.2	0.0	0.012	15.1	0.0	1.5	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.6	gi|564288144|ref|YP_008874352.1|	-	0.017	14.6	0.0	0.049	13.2	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|564288144|ref|YP_008874352.1|	-	0.077	12.7	0.0	0.69	9.6	0.0	2.2	1	1	0	1	1	1	0	Sigma-70,	region	4
MFS_1	PF07690.16	gi|564288145|ref|YP_008874354.1|	-	2.8e-45	154.8	64.5	1.9e-36	125.8	41.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1_like	PF12832.7	gi|564288145|ref|YP_008874354.1|	-	0.00011	21.3	18.3	0.013	14.4	5.0	2.3	1	1	1	2	2	2	2	MFS_1	like	family
Sugar_tr	PF00083.24	gi|564288145|ref|YP_008874354.1|	-	0.84	8.4	28.6	0.023	13.6	9.0	2.5	2	1	0	2	2	2	0	Sugar	(and	other)	transporter
Aldedh	PF00171.22	gi|564288309|ref|YP_008874355.1|	-	5.5e-12	44.9	0.0	5.9e-12	44.8	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
PE	PF00934.20	gi|564288309|ref|YP_008874355.1|	-	0.11	12.9	0.0	0.13	12.6	0.0	1.1	1	0	0	1	1	1	0	PE	family
IclR	PF01614.18	gi|564288146|ref|YP_008874356.1|	-	2.4e-32	111.5	0.0	1.6e-31	108.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288146|ref|YP_008874356.1|	-	8.7e-10	38.3	0.1	5.8e-09	35.6	0.0	2.4	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288146|ref|YP_008874356.1|	-	3.6e-05	23.6	0.4	0.00011	22.0	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|564288146|ref|YP_008874356.1|	-	7.4e-05	22.5	0.0	0.00026	20.8	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|564288146|ref|YP_008874356.1|	-	0.00015	21.6	0.0	0.00043	20.1	0.0	1.8	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|564288146|ref|YP_008874356.1|	-	0.00019	21.3	0.0	0.00036	20.4	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564288146|ref|YP_008874356.1|	-	0.0004	20.4	0.0	0.0012	18.9	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|564288146|ref|YP_008874356.1|	-	0.00063	19.2	0.0	0.0016	17.9	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.20	gi|564288146|ref|YP_008874356.1|	-	0.0094	16.3	0.0	0.021	15.2	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|564288146|ref|YP_008874356.1|	-	0.037	14.2	0.0	0.12	12.5	0.0	1.8	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoC	PF09012.10	gi|564288146|ref|YP_008874356.1|	-	0.064	13.3	0.0	0.15	12.2	0.0	1.6	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF742	PF05331.11	gi|564288146|ref|YP_008874356.1|	-	0.085	12.7	0.0	0.18	11.6	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
Diacid_rec	PF05651.13	gi|564288146|ref|YP_008874356.1|	-	0.13	11.9	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	Putative	sugar	diacid	recognition
ABC_tran	PF00005.27	gi|564288147|ref|YP_008874357.1|	-	2.9e-32	112.0	0.0	5.1e-32	111.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.10	gi|564288147|ref|YP_008874357.1|	-	2.5e-10	40.4	0.1	9e-10	38.6	0.1	2.0	1	0	0	1	1	1	1	TOBE	domain
OB_MalK	PF17912.1	gi|564288147|ref|YP_008874357.1|	-	3e-09	37.6	0.2	2.3e-08	34.7	0.0	2.7	3	0	0	3	3	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|564288147|ref|YP_008874357.1|	-	1e-06	28.8	0.0	0.051	13.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
TOBE	PF03459.17	gi|564288147|ref|YP_008874357.1|	-	1.8e-05	25.0	0.1	0.00031	21.0	0.0	2.6	2	0	0	2	2	2	1	TOBE	domain
SMC_N	PF02463.19	gi|564288147|ref|YP_008874357.1|	-	2.7e-05	23.7	0.7	0.00012	21.6	0.7	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.6	gi|564288147|ref|YP_008874357.1|	-	0.0013	19.1	0.3	0.0029	18.0	0.3	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|564288147|ref|YP_008874357.1|	-	0.0015	18.8	0.2	0.0038	17.5	0.2	1.8	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288147|ref|YP_008874357.1|	-	0.0018	18.2	0.1	0.0044	17.0	0.1	1.6	1	0	0	1	1	1	1	RsgA	GTPase
Rad17	PF03215.15	gi|564288147|ref|YP_008874357.1|	-	0.0029	17.6	0.0	0.0041	17.1	0.0	1.4	1	0	0	1	1	1	1	Rad17	P-loop	domain
AAA_28	PF13521.6	gi|564288147|ref|YP_008874357.1|	-	0.011	16.0	0.4	0.12	12.6	0.0	2.5	3	0	0	3	3	2	0	AAA	domain
AAA_25	PF13481.6	gi|564288147|ref|YP_008874357.1|	-	0.017	14.7	0.0	0.73	9.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
CysA_C_terminal	PF17850.1	gi|564288147|ref|YP_008874357.1|	-	0.025	15.1	3.2	0.21	12.2	0.1	3.5	4	0	0	4	4	4	0	CysA	C-terminal	regulatory	domain
AAA	PF00004.29	gi|564288147|ref|YP_008874357.1|	-	0.032	14.7	0.8	0.18	12.2	0.8	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.6	gi|564288147|ref|YP_008874357.1|	-	0.032	13.9	0.1	0.067	12.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.6	gi|564288147|ref|YP_008874357.1|	-	0.067	13.7	0.0	0.19	12.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|564288147|ref|YP_008874357.1|	-	0.079	12.2	0.1	0.35	10.1	0.0	1.9	2	0	0	2	2	2	0	Zeta	toxin
PhoH	PF02562.16	gi|564288147|ref|YP_008874357.1|	-	0.083	12.3	0.5	0.79	9.1	0.0	2.2	2	0	0	2	2	2	0	PhoH-like	protein
AAA_33	PF13671.6	gi|564288147|ref|YP_008874357.1|	-	0.089	12.9	0.7	0.18	11.9	0.7	1.7	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.15	gi|564288147|ref|YP_008874357.1|	-	0.093	12.6	0.6	0.51	10.2	0.0	2.2	2	0	0	2	2	2	0	NTPase
AAA_29	PF13555.6	gi|564288147|ref|YP_008874357.1|	-	0.094	12.5	0.0	0.21	11.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATPase_2	PF01637.18	gi|564288147|ref|YP_008874357.1|	-	0.11	12.3	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_23	PF13476.6	gi|564288147|ref|YP_008874357.1|	-	0.12	12.9	0.4	0.37	11.3	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_27	PF13514.6	gi|564288147|ref|YP_008874357.1|	-	0.15	11.6	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564288147|ref|YP_008874357.1|	-	0.19	11.4	0.0	0.8	9.3	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
RNA_helicase	PF00910.22	gi|564288147|ref|YP_008874357.1|	-	0.2	12.1	0.0	0.69	10.3	0.0	1.9	1	0	0	1	1	1	0	RNA	helicase
Creatininase	PF02633.14	gi|564288148|ref|YP_008874358.1|	-	8.9e-62	208.7	0.4	1e-61	208.5	0.4	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
SBP_bac_1	PF01547.25	gi|564288149|ref|YP_008874359.1|	-	4.2e-41	141.9	0.1	6.1e-41	141.4	0.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|564288149|ref|YP_008874359.1|	-	6.5e-37	127.9	0.0	9.4e-37	127.3	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.6	gi|564288149|ref|YP_008874359.1|	-	1.6e-05	24.4	0.1	0.14	11.6	0.2	2.3	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.6	gi|564288149|ref|YP_008874359.1|	-	0.0026	17.6	0.0	0.0061	16.3	0.0	1.6	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|564288149|ref|YP_008874359.1|	-	0.015	15.1	0.1	0.033	14.1	0.1	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
BPD_transp_1	PF00528.22	gi|564288150|ref|YP_008874360.1|	-	1.1e-20	74.1	17.1	1.1e-20	74.1	15.9	1.5	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|564288151|ref|YP_008874361.1|	-	9e-16	58.1	18.5	9e-16	58.1	18.5	1.8	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF5036	PF16439.5	gi|564288152|ref|YP_008874362.1|	-	0.06	13.1	0.0	0.091	12.5	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF5036)
MR_MLE_C	PF13378.6	gi|564288153|ref|YP_008874363.1|	-	7.5e-49	166.3	0.1	1e-48	165.8	0.1	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|564288153|ref|YP_008874363.1|	-	1.7e-16	60.5	0.0	4.8e-16	59.0	0.0	1.7	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
DHNA	PF04038.12	gi|564288153|ref|YP_008874363.1|	-	0.092	13.3	0.1	1.2	9.6	0.1	2.3	2	0	0	2	2	2	0	Dihydroneopterin	aldolase
adh_short_C2	PF13561.6	gi|564288154|ref|YP_008874364.1|	-	3.3e-62	210.1	0.2	3.9e-62	209.9	0.2	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|564288154|ref|YP_008874364.1|	-	3.1e-49	167.1	0.3	3.8e-49	166.8	0.3	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|564288154|ref|YP_008874364.1|	-	6.4e-12	45.8	0.2	9.7e-12	45.2	0.2	1.4	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|564288154|ref|YP_008874364.1|	-	3.6e-05	23.3	0.2	0.0002	20.9	0.2	2.1	2	1	0	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.6	gi|564288154|ref|YP_008874364.1|	-	0.0016	18.4	0.6	0.0025	17.7	0.4	1.4	1	1	0	1	1	1	1	NAD(P)H-binding
EccE	PF11203.8	gi|564288154|ref|YP_008874364.1|	-	0.028	14.8	1.9	0.6	10.5	0.2	2.2	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
RmlD_sub_bind	PF04321.17	gi|564288154|ref|YP_008874364.1|	-	0.049	12.7	0.0	0.081	12.0	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
3HCDH_N	PF02737.18	gi|564288154|ref|YP_008874364.1|	-	0.086	12.7	0.3	0.23	11.3	0.0	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Polysacc_synt_2	PF02719.15	gi|564288154|ref|YP_008874364.1|	-	0.12	11.5	0.0	0.21	10.7	0.0	1.4	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
Ribonuc_L-PSP	PF01042.21	gi|564288155|ref|YP_008874365.1|	-	6.3e-41	139.2	0.0	6.9e-41	139.0	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
HAD	PF12710.7	gi|564288156|ref|YP_008874366.1|	-	1.4e-10	41.9	0.2	2.1e-10	41.3	0.2	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|564288156|ref|YP_008874366.1|	-	3.7e-06	27.4	0.3	0.0004	20.7	0.3	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564288156|ref|YP_008874366.1|	-	4e-05	23.8	0.5	0.0036	17.4	0.5	2.9	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
UMPH-1	PF05822.12	gi|564288156|ref|YP_008874366.1|	-	0.081	12.4	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Pyrimidine	5'-nucleotidase	(UMPH-1)
EamA	PF00892.20	gi|564288157|ref|YP_008874367.1|	-	6.8e-33	113.7	34.7	1.8e-16	60.6	19.6	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
RseC_MucC	PF04246.12	gi|564288157|ref|YP_008874367.1|	-	0.012	15.6	1.0	0.012	15.6	1.0	4.0	1	1	3	5	5	5	0	Positive	regulator	of	sigma(E),	RseC/MucC
SDF	PF00375.18	gi|564288158|ref|YP_008874368.1|	-	6.4e-113	377.7	37.4	7.2e-113	377.5	37.4	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
Hexapep	PF00132.24	gi|564288159|ref|YP_008874369.1|	-	2.3e-11	42.9	3.5	8.4e-07	28.5	2.3	2.6	2	1	0	2	2	2	2	Bacterial	transferase	hexapeptide	(six	repeats)
SATase_N	PF06426.14	gi|564288159|ref|YP_008874369.1|	-	8e-05	23.0	0.0	0.00015	22.1	0.0	1.3	1	0	0	1	1	1	1	Serine	acetyltransferase,	N-terminal
Hexapep_2	PF14602.6	gi|564288159|ref|YP_008874369.1|	-	0.0031	17.2	1.2	0.0031	17.2	1.2	2.4	2	1	0	2	2	2	1	Hexapeptide	repeat	of	succinyl-transferase
DUF1996	PF09362.10	gi|564288159|ref|YP_008874369.1|	-	0.11	12.5	0.0	0.17	11.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1996)
zf-RING_7	PF02591.15	gi|564288160|ref|YP_008874370.1|	-	0.044	14.0	1.8	0.21	11.8	0.2	2.2	2	1	0	2	2	2	0	C4-type	zinc	ribbon	domain
DUF3268	PF11672.8	gi|564288160|ref|YP_008874370.1|	-	0.18	12.1	1.0	0.23	11.8	0.1	1.5	1	1	1	2	2	2	0	zinc-finger-containing	domain
THF_DHG_CYH_C	PF02882.19	gi|564288161|ref|YP_008874371.1|	-	8.4e-66	220.2	1.5	1.2e-65	219.8	1.5	1.2	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.23	gi|564288161|ref|YP_008874371.1|	-	6e-34	116.8	0.0	9.1e-34	116.2	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
Chorismate_bind	PF00425.18	gi|564288162|ref|YP_008874372.1|	-	5.8e-100	334.1	0.0	1.6e-99	332.7	0.0	1.7	2	1	1	3	3	3	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.13	gi|564288162|ref|YP_008874372.1|	-	1.8e-08	34.7	0.0	4.9e-08	33.3	0.0	1.7	1	0	0	1	1	1	1	Anthranilate	synthase	component	I,	N	terminal	region
YqgC	PF17430.2	gi|564288162|ref|YP_008874372.1|	-	0.047	13.8	0.1	0.14	12.3	0.1	1.8	1	0	0	1	1	1	0	Uncharacterized	YqgC-like
DUF3484	PF11983.8	gi|564288162|ref|YP_008874372.1|	-	0.12	13.5	0.1	0.34	12.0	0.1	1.8	1	0	0	1	1	1	0	Membrane-attachment	and	polymerisation-promoting	switch
GATase	PF00117.28	gi|564288163|ref|YP_008874373.1|	-	5.8e-46	156.7	0.0	6.5e-46	156.5	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.13	gi|564288163|ref|YP_008874373.1|	-	1.4e-07	31.5	0.8	6e-07	29.4	0.8	1.8	1	1	0	1	1	1	1	Peptidase	C26
Peripla_BP_2	PF01497.18	gi|564288163|ref|YP_008874373.1|	-	0.019	14.5	0.0	0.034	13.7	0.0	1.3	1	0	0	1	1	1	0	Periplasmic	binding	protein
BCCT	PF02028.17	gi|564288164|ref|YP_008874374.1|	-	9.4e-132	439.9	43.7	1.1e-131	439.6	43.7	1.1	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
Pox_A9	PF04835.12	gi|564288164|ref|YP_008874374.1|	-	0.015	15.4	1.6	0.088	13.0	0.0	2.6	2	0	0	2	2	2	0	A9	protein	conserved	region
TrkA_N	PF02254.18	gi|564288165|ref|YP_008874375.1|	-	1.3e-26	93.2	2.3	2.1e-26	92.5	2.3	1.4	1	0	0	1	1	1	1	TrkA-N	domain
Ion_trans_2	PF07885.16	gi|564288165|ref|YP_008874375.1|	-	4.6e-14	52.1	7.5	4.6e-14	52.1	7.5	3.1	4	1	0	4	4	4	1	Ion	channel
Ion_trans	PF00520.31	gi|564288165|ref|YP_008874375.1|	-	0.0016	17.7	0.2	0.003	16.8	0.2	1.5	1	1	0	1	1	1	1	Ion	transport	protein
tRNA-synt_2_TM	PF16995.5	gi|564288165|ref|YP_008874375.1|	-	0.011	15.4	8.3	0.016	14.9	7.9	1.6	1	1	0	1	1	1	0	Transmembrane	region	of	lysyl-tRNA	synthetase
NAD_binding_7	PF13241.6	gi|564288165|ref|YP_008874375.1|	-	0.89	10.0	3.6	0.21	12.0	0.3	1.6	2	0	0	2	2	2	0	Putative	NAD(P)-binding
EamA	PF00892.20	gi|564288166|ref|YP_008874376.1|	-	4.3e-12	46.4	19.3	4.8e-12	46.2	19.3	1.0	1	0	0	1	1	1	1	EamA-like	transporter	family
DUF1129	PF06570.11	gi|564288166|ref|YP_008874376.1|	-	3.9	6.9	8.2	4.9	6.6	1.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
Ribonuc_L-PSP	PF01042.21	gi|564288167|ref|YP_008874377.1|	-	3.4e-37	127.2	0.0	3.8e-37	127.0	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
YjgF_endoribonc	PF14588.6	gi|564288167|ref|YP_008874377.1|	-	0.015	15.4	0.0	0.021	15.0	0.0	1.3	1	0	0	1	1	1	0	YjgF/chorismate_mutase-like,	putative	endoribonuclease
DUF695	PF05117.12	gi|564288168|ref|YP_008874378.1|	-	0.075	13.2	0.0	0.1	12.8	0.0	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF695)
NADH_4Fe-4S	PF10589.9	gi|564288169|ref|YP_008874379.1|	-	4.7e-18	65.0	0.0	8.8e-18	64.2	0.0	1.5	1	0	0	1	1	1	1	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
Complex1_51K	PF01512.17	gi|564288169|ref|YP_008874379.1|	-	3.9e-16	59.3	0.0	6.1e-16	58.6	0.0	1.3	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase	51	Kd	subunit
SLBB	PF10531.9	gi|564288169|ref|YP_008874379.1|	-	0.012	15.5	0.0	0.39	10.6	0.0	2.7	2	0	0	2	2	2	0	SLBB	domain
HMA	PF00403.26	gi|564288169|ref|YP_008874379.1|	-	0.11	13.0	1.2	1.7	9.1	0.1	3.0	3	0	0	3	3	3	0	Heavy-metal-associated	domain
Molybdopterin	PF00384.22	gi|564288170|ref|YP_008874380.1|	-	6.2e-83	279.1	0.0	7.7e-83	278.8	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.21	gi|564288170|ref|YP_008874380.1|	-	8.5e-34	115.9	0.0	1.5e-33	115.1	0.0	1.4	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Fer2_4	PF13510.6	gi|564288170|ref|YP_008874380.1|	-	1.1e-27	95.9	0.2	2.7e-27	94.6	0.2	1.8	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.9	gi|564288170|ref|YP_008874380.1|	-	3.4e-12	45.7	0.8	3.4e-12	45.7	0.8	2.5	2	0	0	2	2	2	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Molybdop_Fe4S4	PF04879.16	gi|564288170|ref|YP_008874380.1|	-	2.9e-09	36.8	0.1	1.1e-08	34.9	0.1	2.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_21	PF14697.6	gi|564288170|ref|YP_008874380.1|	-	4.9e-09	36.2	8.9	4.9e-09	36.2	8.9	2.8	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|564288170|ref|YP_008874380.1|	-	5.4e-09	36.5	15.2	3.6e-08	33.9	8.7	3.6	4	1	0	4	4	3	1	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564288170|ref|YP_008874380.1|	-	3.5e-07	29.8	20.6	0.00017	21.2	1.0	3.6	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564288170|ref|YP_008874380.1|	-	5.8e-06	26.2	12.2	5.9e-05	23.0	3.0	3.7	4	0	0	4	4	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|564288170|ref|YP_008874380.1|	-	5.9e-06	27.1	5.6	0.0017	19.3	0.1	3.6	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.6	gi|564288170|ref|YP_008874380.1|	-	2.9e-05	24.4	8.0	2.9e-05	24.4	8.0	3.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564288170|ref|YP_008874380.1|	-	4.4e-05	23.6	10.0	4.4e-05	23.6	10.0	3.9	2	1	3	5	5	4	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|564288170|ref|YP_008874380.1|	-	0.00016	21.7	13.2	0.00016	21.7	13.2	3.5	4	1	1	5	5	4	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.6	gi|564288170|ref|YP_008874380.1|	-	0.002	18.3	13.1	0.038	14.2	1.5	2.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|564288170|ref|YP_008874380.1|	-	0.01	15.9	2.8	0.01	15.9	2.8	4.5	5	0	0	5	5	4	0	4Fe-4S	binding	domain
CDC48_N	PF02359.18	gi|564288170|ref|YP_008874380.1|	-	0.055	13.7	0.0	0.13	12.4	0.0	1.7	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
NIPSNAP	PF07978.13	gi|564288170|ref|YP_008874380.1|	-	0.17	12.1	0.0	0.58	10.4	0.0	1.9	1	0	0	1	1	1	0	NIPSNAP
Fer4_15	PF13459.6	gi|564288170|ref|YP_008874380.1|	-	0.17	12.6	18.3	0.11	13.3	3.5	4.6	3	1	1	4	4	4	0	4Fe-4S	single	cluster	domain
Fer4_22	PF17179.4	gi|564288170|ref|YP_008874380.1|	-	0.42	11.5	16.1	0.36	11.7	1.3	3.8	4	0	0	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.6	gi|564288170|ref|YP_008874380.1|	-	0.53	10.9	15.6	2.3	8.8	4.1	3.0	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Creatininase	PF02633.14	gi|564288171|ref|YP_008874381.1|	-	1.5e-68	230.9	2.0	1.7e-68	230.7	2.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
CPBP	PF02517.16	gi|564288172|ref|YP_008874382.1|	-	5.7e-14	52.3	8.5	5.7e-14	52.3	8.5	2.8	2	1	2	4	4	4	1	CPBP	intramembrane	metalloprotease
Peptidase_S8	PF00082.22	gi|564288310|ref|YP_008874383.1|	-	3.8e-17	62.5	2.7	1.5e-15	57.3	0.0	2.7	2	1	0	2	2	2	2	Subtilase	family
HTH_20	PF12840.7	gi|564288173|ref|YP_008874384.1|	-	3.8e-14	52.5	0.0	6.4e-14	51.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288173|ref|YP_008874384.1|	-	6.6e-07	29.1	0.0	1.3e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|564288173|ref|YP_008874384.1|	-	4.2e-06	26.2	0.0	7e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564288173|ref|YP_008874384.1|	-	0.12	12.2	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
GerE	PF00196.19	gi|564288173|ref|YP_008874384.1|	-	0.17	11.5	0.0	0.3	10.7	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_5	PF01022.20	gi|564288173|ref|YP_008874384.1|	-	0.18	11.7	0.0	0.33	10.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Ribosomal_L21p	PF00829.21	gi|564288174|ref|YP_008874385.1|	-	0.0039	17.4	0.6	2.2	8.6	0.0	3.3	3	0	0	3	3	3	1	Ribosomal	prokaryotic	L21	protein
Excalibur	PF05901.11	gi|564288174|ref|YP_008874385.1|	-	0.0064	17.1	0.1	1.1	9.9	0.0	3.6	3	0	0	3	3	3	1	Excalibur	calcium-binding	domain
YpM	PF09144.10	gi|564288174|ref|YP_008874385.1|	-	0.0081	16.3	0.2	0.19	11.9	0.1	2.4	2	0	0	2	2	2	1	Yersinia	pseudo-tuberculosis	mitogen
RNase_II_C_S1	PF18614.1	gi|564288174|ref|YP_008874385.1|	-	0.015	15.2	5.3	1.9	8.5	0.0	4.3	4	0	0	4	4	4	0	RNase	II-type	exonuclease	C-terminal	S1	domain
NusG_II	PF07009.11	gi|564288174|ref|YP_008874385.1|	-	0.14	12.4	0.1	13	6.1	0.0	3.0	2	1	1	3	3	3	0	NusG	domain	II
AglB_L1	PF18079.1	gi|564288174|ref|YP_008874385.1|	-	1.5	9.2	6.7	1.3	9.3	0.2	3.7	4	1	0	4	4	4	0	Archaeal	glycosylation	protein	B	long	peripheral	domain
PRC	PF05239.16	gi|564288175|ref|YP_008874386.1|	-	1.9e-09	37.5	0.0	2.3e-09	37.2	0.0	1.1	1	0	0	1	1	1	1	PRC-barrel	domain
CopD	PF05425.13	gi|564288312|ref|YP_008874388.1|	-	0.00014	22.2	16.5	0.0082	16.5	9.7	2.3	1	1	1	2	2	2	2	Copper	resistance	protein	D
DUF4149	PF13664.6	gi|564288312|ref|YP_008874388.1|	-	0.13	12.5	9.8	0.16	12.3	6.4	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
Fe_dep_repress	PF01325.19	gi|564288176|ref|YP_008874389.1|	-	4.7e-15	55.5	0.1	6.8e-15	55.0	0.1	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.7	gi|564288176|ref|YP_008874389.1|	-	1.3e-06	28.2	0.0	2.3e-06	27.4	0.0	1.4	1	1	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564288176|ref|YP_008874389.1|	-	2.8e-05	24.0	0.0	4.8e-05	23.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564288176|ref|YP_008874389.1|	-	0.0002	21.2	0.0	0.0003	20.7	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288176|ref|YP_008874389.1|	-	0.0014	19.1	0.0	0.0022	18.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|564288176|ref|YP_008874389.1|	-	0.0031	17.0	0.0	0.0044	16.5	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rio2_N	PF09202.11	gi|564288176|ref|YP_008874389.1|	-	0.012	15.8	0.0	0.016	15.4	0.0	1.2	1	0	0	1	1	1	0	Rio2,	N-terminal
Rrf2	PF02082.20	gi|564288176|ref|YP_008874389.1|	-	0.019	15.3	0.0	0.031	14.6	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
Put_DNA-bind_N	PF06971.13	gi|564288176|ref|YP_008874389.1|	-	0.067	13.2	0.0	0.12	12.4	0.0	1.4	1	0	0	1	1	1	0	Putative	DNA-binding	protein	N-terminus
HTH_12	PF08461.10	gi|564288176|ref|YP_008874389.1|	-	0.073	13.0	0.0	0.12	12.4	0.0	1.5	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
GntR	PF00392.21	gi|564288176|ref|YP_008874389.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Topoisom_bac	PF01131.20	gi|564288176|ref|YP_008874389.1|	-	0.14	11.2	0.0	0.16	11.0	0.0	1.1	1	0	0	1	1	1	0	DNA	topoisomerase
TrmB	PF01978.19	gi|564288176|ref|YP_008874389.1|	-	0.15	12.0	0.0	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_13	PF11972.8	gi|564288176|ref|YP_008874389.1|	-	0.19	11.8	0.0	0.55	10.3	0.0	1.7	1	1	1	2	2	2	0	HTH	DNA	binding	domain
DUF505	PF04458.12	gi|564288176|ref|YP_008874389.1|	-	0.2	10.0	0.0	0.24	9.7	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
DUF2249	PF10006.9	gi|564288177|ref|YP_008874390.1|	-	9.3e-82	268.9	16.5	9.2e-28	95.9	0.5	4.1	4	0	0	4	4	4	4	Uncharacterized	conserved	protein	(DUF2249)
Hemerythrin	PF01814.23	gi|564288178|ref|YP_008874391.1|	-	8.6e-20	71.7	20.0	8.6e-20	71.7	20.0	1.7	1	1	1	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
ScdA_N	PF04405.14	gi|564288178|ref|YP_008874391.1|	-	3.5e-18	65.0	1.3	4.3e-18	64.7	0.1	1.8	2	0	0	2	2	2	1	Domain	of	Unknown	function	(DUF542)
CorA	PF01544.18	gi|564288178|ref|YP_008874391.1|	-	3e-05	23.5	6.5	3e-05	23.5	6.5	1.5	1	1	1	2	2	2	1	CorA-like	Mg2+	transporter	protein
DUF1858	PF08984.11	gi|564288178|ref|YP_008874391.1|	-	0.0073	16.5	0.0	0.15	12.3	0.0	2.9	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF1858)
DLP_helical	PF18709.1	gi|564288178|ref|YP_008874391.1|	-	0.011	15.0	2.6	0.014	14.6	1.2	1.9	1	1	1	2	2	2	0	Dynamin-like	helical	domain
ERp29	PF07749.12	gi|564288178|ref|YP_008874391.1|	-	0.021	15.7	3.1	0.058	14.3	0.4	2.5	1	1	1	2	2	2	0	Endoplasmic	reticulum	protein	ERp29,	C-terminal	domain
DinB	PF05163.12	gi|564288178|ref|YP_008874391.1|	-	0.056	13.4	8.0	0.032	14.2	5.8	1.7	1	1	0	1	1	1	0	DinB	family
Prefoldin	PF02996.17	gi|564288178|ref|YP_008874391.1|	-	0.059	13.3	1.1	2.5	8.0	0.0	3.2	2	2	1	3	3	3	0	Prefoldin	subunit
DUF3038	PF11237.8	gi|564288178|ref|YP_008874391.1|	-	0.063	13.3	0.4	0.12	12.4	0.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3038)
RasGAP_C	PF03836.15	gi|564288178|ref|YP_008874391.1|	-	0.063	13.4	3.5	0.11	12.6	0.7	2.5	1	1	1	2	2	2	0	RasGAP	C-terminus
Utp12	PF04003.12	gi|564288178|ref|YP_008874391.1|	-	0.092	13.1	0.4	0.32	11.3	0.0	2.1	3	0	0	3	3	3	0	Dip2/Utp12	Family
SesA	PF17107.5	gi|564288178|ref|YP_008874391.1|	-	0.11	12.6	1.0	0.26	11.5	0.5	1.9	1	1	0	1	1	1	0	N-terminal	domain	on	NACHT_NTPase	and	P-loop	NTPases
Exonuc_VII_L	PF02601.15	gi|564288178|ref|YP_008874391.1|	-	0.12	12.0	2.9	0.21	11.2	2.9	1.5	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
SHE3	PF17078.5	gi|564288178|ref|YP_008874391.1|	-	0.15	11.8	4.7	0.21	11.3	1.2	2.3	1	1	1	2	2	2	0	SWI5-dependent	HO	expression	protein	3
ImpA_N	PF06812.12	gi|564288178|ref|YP_008874391.1|	-	0.41	10.8	5.3	22	5.2	0.0	3.6	2	1	0	2	2	2	0	ImpA,	N-terminal,	type	VI	secretion	system
FapA	PF03961.13	gi|564288178|ref|YP_008874391.1|	-	0.58	8.7	2.5	6.7	5.2	0.9	2.0	1	1	1	2	2	2	0	Flagellar	Assembly	Protein	A
DUF1664	PF07889.12	gi|564288178|ref|YP_008874391.1|	-	1.2	9.2	2.7	18	5.4	1.7	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Spc7	PF08317.11	gi|564288178|ref|YP_008874391.1|	-	7.3	5.4	14.1	12	4.7	9.0	2.4	1	1	1	2	2	2	0	Spc7	kinetochore	protein
DUF4404	PF14357.6	gi|564288178|ref|YP_008874391.1|	-	7.5	7.3	15.6	1.3	9.7	5.1	2.8	2	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4404)
TetR_C_6	PF13977.6	gi|564288180|ref|YP_008874393.1|	-	5.9e-22	78.1	0.8	5.9e-22	78.1	0.8	1.7	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564288180|ref|YP_008874393.1|	-	4.4e-10	39.2	0.7	8e-10	38.4	0.7	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_24	PF17932.1	gi|564288180|ref|YP_008874393.1|	-	1.8e-05	25.0	0.2	5e-05	23.5	0.0	1.9	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|564288180|ref|YP_008874393.1|	-	0.013	16.2	0.0	0.027	15.1	0.0	1.6	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564288180|ref|YP_008874393.1|	-	0.014	15.4	0.4	0.052	13.6	0.1	2.3	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HAD_2	PF13419.6	gi|564288180|ref|YP_008874393.1|	-	0.016	15.3	0.3	0.061	13.4	0.3	1.8	1	1	1	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
Sigma70_r4	PF04545.16	gi|564288180|ref|YP_008874393.1|	-	0.037	13.5	0.0	0.067	12.7	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
TetR_C_17	PF17922.1	gi|564288180|ref|YP_008874393.1|	-	0.064	13.4	0.0	0.18	11.9	0.0	1.7	2	0	0	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564288180|ref|YP_008874393.1|	-	0.087	12.9	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_6	PF13977.6	gi|564288181|ref|YP_008874394.1|	-	1.7e-15	57.2	2.3	1.7e-15	57.2	2.3	1.7	2	0	0	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|564288181|ref|YP_008874394.1|	-	7.9e-14	51.2	0.3	1.5e-13	50.3	0.3	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_11	PF16859.5	gi|564288181|ref|YP_008874394.1|	-	0.00035	20.9	1.9	0.00075	19.8	1.9	1.6	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|564288181|ref|YP_008874394.1|	-	0.00047	20.2	0.8	0.00082	19.4	0.2	1.8	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|564288181|ref|YP_008874394.1|	-	0.00065	20.0	0.3	0.0033	17.7	0.1	2.4	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|564288181|ref|YP_008874394.1|	-	0.0018	18.3	0.1	0.008	16.3	0.0	2.0	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|564288181|ref|YP_008874394.1|	-	0.12	12.4	0.1	0.25	11.4	0.1	1.8	1	1	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
MatE	PF01554.18	gi|564288182|ref|YP_008874395.1|	-	1.3e-64	216.7	34.1	7.8e-36	123.2	16.0	2.4	2	0	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|564288182|ref|YP_008874395.1|	-	0.00079	19.5	42.7	0.033	14.2	20.9	4.8	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
Methyltransf_11	PF08241.12	gi|564288183|ref|YP_008874396.1|	-	2.6e-21	76.1	0.0	1.1e-20	74.0	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288183|ref|YP_008874396.1|	-	6.3e-20	71.7	0.0	7.8e-20	71.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564288183|ref|YP_008874396.1|	-	7.4e-19	68.3	0.0	3.4e-18	66.2	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288183|ref|YP_008874396.1|	-	5.9e-14	52.1	0.0	1.1e-13	51.2	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|564288183|ref|YP_008874396.1|	-	1.1e-13	51.1	0.0	2.2e-13	50.1	0.0	1.4	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|564288183|ref|YP_008874396.1|	-	1.4e-12	48.2	0.0	3.3e-12	47.0	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288183|ref|YP_008874396.1|	-	0.00098	18.7	0.0	0.0023	17.5	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.15	gi|564288183|ref|YP_008874396.1|	-	0.011	15.6	0.0	0.019	14.9	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	methyltransferase
PrmA	PF06325.13	gi|564288183|ref|YP_008874396.1|	-	0.034	13.5	0.0	0.045	13.1	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
MetW	PF07021.12	gi|564288183|ref|YP_008874396.1|	-	0.068	12.8	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_24	PF13578.6	gi|564288183|ref|YP_008874396.1|	-	0.1	13.7	0.0	0.21	12.7	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
PCMT	PF01135.19	gi|564288183|ref|YP_008874396.1|	-	0.17	11.6	0.0	0.25	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
NodS	PF05401.11	gi|564288183|ref|YP_008874396.1|	-	0.18	11.4	0.0	0.27	10.8	0.0	1.2	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
RrnaAD	PF00398.20	gi|564288183|ref|YP_008874396.1|	-	0.19	10.8	0.0	0.3	10.1	0.0	1.4	1	1	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
DREV	PF05219.12	gi|564288183|ref|YP_008874396.1|	-	0.19	10.8	0.0	0.28	10.3	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
AIM24	PF01987.17	gi|564288184|ref|YP_008874397.1|	-	3.8e-28	98.7	0.3	4.4e-28	98.4	0.3	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
PP_kinase_C_1	PF17941.1	gi|564288185|ref|YP_008874398.1|	-	2.8e-69	231.9	0.0	5.3e-69	231.0	0.0	1.4	1	0	0	1	1	1	1	Polyphosphate	kinase	C-terminal	domain	1
PP_kinase_C	PF13090.6	gi|564288185|ref|YP_008874398.1|	-	1.3e-63	213.6	0.0	1.4e-61	206.9	0.0	2.5	2	1	0	2	2	2	2	Polyphosphate	kinase	C-terminal	domain	2
PP_kinase	PF02503.17	gi|564288185|ref|YP_008874398.1|	-	4.1e-60	202.8	0.7	6.7e-60	202.1	0.7	1.3	1	0	0	1	1	1	1	Polyphosphate	kinase	middle	domain
PP_kinase_N	PF13089.6	gi|564288185|ref|YP_008874398.1|	-	9.7e-36	122.4	0.1	2.7e-35	120.9	0.0	1.9	2	0	0	2	2	2	1	Polyphosphate	kinase	N-terminal	domain
PLDc_2	PF13091.6	gi|564288185|ref|YP_008874398.1|	-	2.1e-12	47.1	0.0	1.2e-06	28.5	0.1	2.7	3	0	0	3	3	3	2	PLD-like	domain
Metallophos	PF00149.28	gi|564288186|ref|YP_008874399.1|	-	7.1e-13	49.5	0.1	1e-12	49.0	0.1	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.7	gi|564288186|ref|YP_008874399.1|	-	2.6e-07	31.0	0.0	6.6e-07	29.7	0.0	1.8	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF5533	PF17685.1	gi|564288187|ref|YP_008874401.1|	-	0.29	11.5	2.0	0.31	11.4	2.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5533)
DUF3487	PF11990.8	gi|564288187|ref|YP_008874401.1|	-	3.1	7.7	5.5	4.5	7.2	5.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF726	PF05277.12	gi|564288188|ref|YP_008874402.1|	-	2.1e-14	53.3	0.0	2.5e-14	53.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF726)
DUF900	PF05990.12	gi|564288188|ref|YP_008874402.1|	-	6e-12	45.6	0.0	8.2e-12	45.1	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	of	unknown	function	(DUF900)
Abhydrolase_6	PF12697.7	gi|564288188|ref|YP_008874402.1|	-	0.00044	20.9	8.8	0.00073	20.2	8.8	1.5	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Lipase	PF00151.19	gi|564288188|ref|YP_008874402.1|	-	0.016	14.5	0.0	0.024	13.9	0.0	1.1	1	0	0	1	1	1	0	Lipase
LCAT	PF02450.15	gi|564288188|ref|YP_008874402.1|	-	0.036	13.2	0.0	0.045	12.9	0.0	1.1	1	0	0	1	1	1	0	Lecithin:cholesterol	acyltransferase
Tudor_4	PF18358.1	gi|564288188|ref|YP_008874402.1|	-	0.096	12.3	0.0	0.22	11.1	0.0	1.5	1	0	0	1	1	1	0	Histone	methyltransferase	Tudor	domain
CAF1A	PF12253.8	gi|564288188|ref|YP_008874402.1|	-	0.14	12.3	0.1	0.26	11.5	0.1	1.4	1	0	0	1	1	1	0	Chromatin	assembly	factor	1	subunit	A
Methyltransf_25	PF13649.6	gi|564288189|ref|YP_008874403.1|	-	4.2e-12	46.6	0.0	6.2e-12	46.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288189|ref|YP_008874403.1|	-	1.6e-09	38.3	0.0	2.6e-09	37.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288189|ref|YP_008874403.1|	-	3e-09	36.9	0.0	7.1e-09	35.7	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|564288189|ref|YP_008874403.1|	-	1.8e-07	30.8	0.0	2.2e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Ubie_methyltran	PF01209.18	gi|564288189|ref|YP_008874403.1|	-	2.4e-07	30.3	0.0	3.3e-07	29.9	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_15	PF09445.10	gi|564288189|ref|YP_008874403.1|	-	2.5e-06	27.1	0.0	3.1e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_31	PF13847.6	gi|564288189|ref|YP_008874403.1|	-	1.3e-05	25.0	0.0	1.7e-05	24.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|564288189|ref|YP_008874403.1|	-	0.00018	22.2	0.0	0.00034	21.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.14	gi|564288189|ref|YP_008874403.1|	-	0.00025	20.7	0.0	0.00036	20.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
UPF0020	PF01170.18	gi|564288189|ref|YP_008874403.1|	-	0.00073	19.3	0.0	0.001	18.8	0.0	1.1	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
PCMT	PF01135.19	gi|564288189|ref|YP_008874403.1|	-	0.0096	15.7	0.0	0.013	15.2	0.0	1.1	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Met_10	PF02475.16	gi|564288189|ref|YP_008874403.1|	-	0.053	13.3	0.0	0.068	12.9	0.0	1.1	1	0	0	1	1	1	0	Met-10+	like-protein
PrmA	PF06325.13	gi|564288189|ref|YP_008874403.1|	-	0.12	11.7	0.0	0.16	11.3	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
PIN	PF01850.21	gi|564288190|ref|YP_008874404.1|	-	4.9e-10	40.0	2.9	5.6e-10	39.8	2.9	1.0	1	0	0	1	1	1	1	PIN	domain
COX1	PF00115.20	gi|564288192|ref|YP_008874406.1|	-	7e-145	483.2	61.7	7e-145	483.2	61.7	1.6	2	0	0	2	2	2	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Cupin_2	PF07883.11	gi|564288193|ref|YP_008874407.1|	-	2.1e-07	30.5	0.3	3.1e-07	30.0	0.3	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|564288193|ref|YP_008874407.1|	-	0.0073	16.0	0.1	0.011	15.4	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding_2	PF14525.6	gi|564288193|ref|YP_008874407.1|	-	0.011	15.4	0.1	0.013	15.2	0.1	1.1	1	0	0	1	1	1	0	AraC-binding-like	domain
Inhibitor_I78	PF11720.8	gi|564288193|ref|YP_008874407.1|	-	0.055	13.5	0.0	0.23	11.5	0.0	1.9	1	1	1	2	2	2	0	Peptidase	inhibitor	I78	family
Cupin_6	PF12852.7	gi|564288193|ref|YP_008874407.1|	-	0.066	12.9	0.4	0.077	12.7	0.4	1.3	1	1	0	1	1	1	0	Cupin
AraC_binding	PF02311.19	gi|564288193|ref|YP_008874407.1|	-	0.15	11.9	0.0	0.19	11.6	0.0	1.1	1	0	0	1	1	1	0	AraC-like	ligand	binding	domain
Bac_luciferase	PF00296.20	gi|564288194|ref|YP_008874408.1|	-	2.3e-47	162.0	4.7	3.7e-47	161.3	1.7	1.9	1	1	1	2	2	2	1	Luciferase-like	monooxygenase
DUF2761	PF10959.8	gi|564288194|ref|YP_008874408.1|	-	0.02	14.9	0.3	0.094	12.7	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2761)
NAD_binding_10	PF13460.6	gi|564288195|ref|YP_008874409.1|	-	3.5e-36	124.8	2.4	4.1e-36	124.6	2.4	1.1	1	0	0	1	1	1	1	NAD(P)H-binding
NmrA	PF05368.13	gi|564288195|ref|YP_008874409.1|	-	2.5e-11	43.6	0.0	3.5e-11	43.1	0.0	1.3	1	0	0	1	1	1	1	NmrA-like	family
3Beta_HSD	PF01073.19	gi|564288195|ref|YP_008874409.1|	-	5.2e-09	35.5	0.0	7.1e-09	35.1	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Epimerase	PF01370.21	gi|564288195|ref|YP_008874409.1|	-	5.7e-07	29.3	0.0	7e-07	28.9	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Semialdhyde_dh	PF01118.24	gi|564288195|ref|YP_008874409.1|	-	6e-05	23.5	0.1	8.9e-05	22.9	0.1	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564288195|ref|YP_008874409.1|	-	0.0042	17.3	0.2	0.016	15.4	0.1	2.0	2	0	0	2	2	2	1	Saccharopine	dehydrogenase	NADP	binding	domain
TrkA_N	PF02254.18	gi|564288195|ref|YP_008874409.1|	-	0.021	15.1	0.0	0.037	14.3	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
ADH_zinc_N	PF00107.26	gi|564288195|ref|YP_008874409.1|	-	0.059	13.3	0.0	0.11	12.5	0.0	1.5	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
HsbA	PF12296.8	gi|564288195|ref|YP_008874409.1|	-	0.067	13.6	0.5	5.5	7.4	0.1	2.3	2	0	0	2	2	2	0	Hydrophobic	surface	binding	protein	A
EamA	PF00892.20	gi|564288196|ref|YP_008874410.1|	-	7e-38	129.9	39.1	1.1e-19	71.0	16.9	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.16	gi|564288196|ref|YP_008874410.1|	-	0.03	13.7	8.6	0.22	10.8	4.3	2.2	2	0	0	2	2	2	0	Triose-phosphate	Transporter	family
Aldo_ket_red	PF00248.21	gi|564288197|ref|YP_008874411.1|	-	8e-56	189.4	0.0	3.3e-53	180.8	0.0	2.0	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Peptidase_M19	PF01244.21	gi|564288198|ref|YP_008874412.1|	-	0.038	13.2	0.0	0.042	13.0	0.0	1.1	1	0	0	1	1	1	0	Membrane	dipeptidase	(Peptidase	family	M19)
Peptidase_M48	PF01435.18	gi|564288199|ref|YP_008874415.1|	-	6.9e-39	133.7	0.0	8.6e-39	133.3	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.11	gi|564288199|ref|YP_008874415.1|	-	2.8e-06	26.8	0.1	6.2e-06	25.6	0.0	1.7	2	0	0	2	2	2	1	BlaR1	peptidase	M56
SprT-like	PF10263.9	gi|564288199|ref|YP_008874415.1|	-	0.062	13.2	0.0	0.092	12.6	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
PrgI	PF12666.7	gi|564288199|ref|YP_008874415.1|	-	4.9	7.9	8.1	19	6.0	1.7	2.3	2	0	0	2	2	2	0	PrgI	family	protein
ADH_N	PF08240.12	gi|564288200|ref|YP_008874416.1|	-	2.7e-31	107.7	3.3	5.8e-31	106.6	3.3	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288200|ref|YP_008874416.1|	-	4e-21	75.4	0.3	8.1e-21	74.4	0.3	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.6	gi|564288200|ref|YP_008874416.1|	-	5.7e-06	27.4	0.6	1.1e-05	26.6	0.1	1.8	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_N_2	PF16884.5	gi|564288200|ref|YP_008874416.1|	-	0.082	12.8	0.0	0.42	10.5	0.0	2.0	2	0	0	2	2	2	0	N-terminal	domain	of	oxidoreductase
DUF2318	PF10080.9	gi|564288200|ref|YP_008874416.1|	-	0.11	12.6	1.5	0.42	10.8	0.0	2.1	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2318)
TOBE_2	PF08402.10	gi|564288200|ref|YP_008874416.1|	-	0.99	9.6	5.2	0.56	10.4	0.3	3.0	3	1	0	3	3	3	0	TOBE	domain
Metallophos_2	PF12850.7	gi|564288201|ref|YP_008874417.1|	-	3.2e-12	47.0	0.0	1e-05	25.8	0.0	2.2	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.28	gi|564288201|ref|YP_008874417.1|	-	3.3e-10	40.8	0.5	2.4e-08	34.7	0.3	2.1	2	0	0	2	2	2	2	Calcineurin-like	phosphoesterase
HTH_20	PF12840.7	gi|564288202|ref|YP_008874418.1|	-	3.1e-06	27.2	0.1	4.8e-06	26.6	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288202|ref|YP_008874418.1|	-	0.0029	17.4	0.0	0.0054	16.5	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|564288202|ref|YP_008874418.1|	-	0.0082	16.0	0.1	0.017	15.0	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|564288202|ref|YP_008874418.1|	-	0.0093	15.9	0.0	0.015	15.2	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
HTH_17	PF12728.7	gi|564288202|ref|YP_008874418.1|	-	0.012	15.8	0.0	0.023	14.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564288202|ref|YP_008874418.1|	-	0.036	13.9	0.0	0.06	13.2	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FAD-oxidase_C	PF02913.19	gi|564288205|ref|YP_008874421.1|	-	4e-67	226.5	0.1	9.1e-67	225.3	0.1	1.6	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|564288205|ref|YP_008874421.1|	-	8.6e-39	132.4	0.2	1.9e-38	131.4	0.2	1.6	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|564288205|ref|YP_008874421.1|	-	7.3e-09	36.1	3.6	1.4e-08	35.1	3.6	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|564288205|ref|YP_008874421.1|	-	6e-08	33.0	4.8	1.3e-07	32.0	4.8	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|564288205|ref|YP_008874421.1|	-	2.9e-06	27.4	0.0	0.00087	19.5	0.0	2.7	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_10	PF13237.6	gi|564288205|ref|YP_008874421.1|	-	0.00016	21.7	3.3	0.0045	17.1	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|564288205|ref|YP_008874421.1|	-	0.00095	19.3	2.2	0.025	14.8	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|564288205|ref|YP_008874421.1|	-	0.07	12.5	0.0	0.13	11.6	0.0	1.4	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_7	PF12838.7	gi|564288205|ref|YP_008874421.1|	-	0.3	11.7	7.4	2.3	8.9	7.7	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.6	gi|564288205|ref|YP_008874421.1|	-	0.31	11.2	5.5	0.32	11.2	0.5	2.6	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|564288205|ref|YP_008874421.1|	-	5.5	7.0	12.3	0.2	11.5	3.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.7	gi|564288205|ref|YP_008874421.1|	-	7.9	6.7	10.4	0.6	10.3	2.2	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Lactate_perm	PF02652.14	gi|564288206|ref|YP_008874422.1|	-	5.4e-102	342.2	42.9	1.6e-53	182.3	22.7	2.1	2	0	0	2	2	2	2	L-lactate	permease
ThuA	PF06283.11	gi|564288207|ref|YP_008874423.1|	-	2.9e-34	119.1	0.3	3.5e-34	118.9	0.3	1.1	1	0	0	1	1	1	1	Trehalose	utilisation
Pyr_redox_2	PF07992.14	gi|564288209|ref|YP_008874425.1|	-	1e-18	67.6	9.8	3.1e-12	46.3	0.5	2.1	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288209|ref|YP_008874425.1|	-	2.5e-12	46.7	0.3	9.4e-07	28.4	0.0	2.3	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|564288209|ref|YP_008874425.1|	-	6.5e-10	38.3	0.0	8.6e-05	21.4	0.0	2.3	2	1	0	2	2	2	2	HI0933-like	protein
FAD_binding_3	PF01494.19	gi|564288209|ref|YP_008874425.1|	-	5.1e-09	35.8	1.0	1.4e-05	24.6	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.24	gi|564288209|ref|YP_008874425.1|	-	2.5e-08	33.9	0.6	0.0012	18.6	0.0	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288209|ref|YP_008874425.1|	-	3.1e-07	29.8	1.1	2.9e-06	26.6	0.1	2.1	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564288209|ref|YP_008874425.1|	-	3.3e-05	24.0	0.0	7.7e-05	22.8	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.22	gi|564288209|ref|YP_008874425.1|	-	5.7e-05	22.4	0.7	0.00031	20.0	0.1	2.1	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.7	gi|564288209|ref|YP_008874425.1|	-	0.00014	21.4	0.0	0.00014	21.4	0.0	2.1	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564288209|ref|YP_008874425.1|	-	0.00046	19.5	0.0	0.0008	18.7	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_9	PF13454.6	gi|564288209|ref|YP_008874425.1|	-	0.0011	19.0	0.2	0.87	9.6	0.1	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.21	gi|564288209|ref|YP_008874425.1|	-	0.0023	17.3	0.2	0.0034	16.7	0.2	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.12	gi|564288209|ref|YP_008874425.1|	-	0.0053	15.8	0.3	0.031	13.3	0.1	1.9	1	1	0	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.27	gi|564288209|ref|YP_008874425.1|	-	0.012	16.1	0.1	0.057	14.0	0.0	2.0	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.6	gi|564288209|ref|YP_008874425.1|	-	0.052	12.7	0.1	5.3	6.1	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_7	PF13241.6	gi|564288209|ref|YP_008874425.1|	-	0.11	12.9	0.1	0.24	11.9	0.1	1.7	1	1	0	1	1	1	0	Putative	NAD(P)-binding
ADH_N	PF08240.12	gi|564288210|ref|YP_008874426.1|	-	6e-27	93.7	0.9	6e-27	93.7	0.9	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|564288210|ref|YP_008874426.1|	-	2.7e-23	82.4	1.3	5e-23	81.5	1.3	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|564288210|ref|YP_008874426.1|	-	2.1e-07	30.6	0.4	3.2e-07	30.0	0.4	1.3	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_N_assoc	PF13823.6	gi|564288210|ref|YP_008874426.1|	-	3.1e-05	23.8	0.1	3.1e-05	23.8	0.1	1.8	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-associated
ADH_zinc_N_2	PF13602.6	gi|564288210|ref|YP_008874426.1|	-	0.00031	21.8	0.1	0.00066	20.7	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.21	gi|564288210|ref|YP_008874426.1|	-	0.047	13.0	2.0	0.072	12.4	2.0	1.2	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Peripla_BP_2	PF01497.18	gi|564288211|ref|YP_008874427.1|	-	1.5e-18	67.3	0.0	1.9e-18	66.9	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ABC_tran	PF00005.27	gi|564288212|ref|YP_008874428.1|	-	7.9e-30	104.2	0.0	1.2e-29	103.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|564288212|ref|YP_008874428.1|	-	5.3e-12	46.2	4.0	2.1e-05	24.5	0.3	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|564288212|ref|YP_008874428.1|	-	2.2e-11	43.6	0.0	5.7e-06	25.9	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|564288212|ref|YP_008874428.1|	-	1.4e-05	24.7	0.0	2.6e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.6	gi|564288212|ref|YP_008874428.1|	-	6e-05	23.3	1.8	0.00098	19.4	1.8	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.6	gi|564288212|ref|YP_008874428.1|	-	0.00017	21.4	0.1	0.00028	20.7	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.6	gi|564288212|ref|YP_008874428.1|	-	0.00021	21.5	0.1	0.001	19.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
ABC_ATPase	PF09818.9	gi|564288212|ref|YP_008874428.1|	-	0.00043	19.2	0.7	0.48	9.2	0.0	2.9	2	1	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_16	PF13191.6	gi|564288212|ref|YP_008874428.1|	-	0.00049	20.5	0.4	0.00089	19.7	0.4	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.6	gi|564288212|ref|YP_008874428.1|	-	0.00072	20.1	0.0	0.0013	19.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_15	PF13175.6	gi|564288212|ref|YP_008874428.1|	-	0.0021	17.8	0.0	0.0035	17.1	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.22	gi|564288212|ref|YP_008874428.1|	-	0.0032	17.1	0.1	0.0067	16.1	0.1	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.12	gi|564288212|ref|YP_008874428.1|	-	0.0043	16.3	0.0	0.0079	15.5	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
RsgA_GTPase	PF03193.16	gi|564288212|ref|YP_008874428.1|	-	0.0073	16.2	0.4	0.013	15.4	0.1	1.6	2	0	0	2	2	1	1	RsgA	GTPase
NACHT	PF05729.12	gi|564288212|ref|YP_008874428.1|	-	0.0095	15.9	0.1	0.02	14.8	0.0	1.6	2	0	0	2	2	1	1	NACHT	domain
MMR_HSR1	PF01926.23	gi|564288212|ref|YP_008874428.1|	-	0.016	15.2	0.3	0.071	13.2	0.3	2.0	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA	PF00004.29	gi|564288212|ref|YP_008874428.1|	-	0.017	15.6	0.2	0.042	14.3	0.1	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|564288212|ref|YP_008874428.1|	-	0.018	14.4	0.2	0.43	9.9	0.2	2.1	2	0	0	2	2	2	0	Bacterial	TniB	protein
ATP_bind_1	PF03029.17	gi|564288212|ref|YP_008874428.1|	-	0.022	14.5	0.1	1.6	8.4	0.0	2.1	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
MukB	PF04310.12	gi|564288212|ref|YP_008874428.1|	-	0.025	14.4	0.3	0.52	10.1	0.1	2.4	2	0	0	2	2	2	0	MukB	N-terminal
AAA_25	PF13481.6	gi|564288212|ref|YP_008874428.1|	-	0.031	13.9	0.9	0.087	12.4	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_14	PF13173.6	gi|564288212|ref|YP_008874428.1|	-	0.035	14.2	0.0	0.087	12.9	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
cobW	PF02492.19	gi|564288212|ref|YP_008874428.1|	-	0.035	13.7	0.5	0.064	12.8	0.1	1.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.6	gi|564288212|ref|YP_008874428.1|	-	0.04	13.6	0.1	0.39	10.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ATPase_2	PF01637.18	gi|564288212|ref|YP_008874428.1|	-	0.051	13.5	0.0	0.078	12.9	0.0	1.4	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
Mg_chelatase	PF01078.21	gi|564288212|ref|YP_008874428.1|	-	0.054	12.9	0.1	0.28	10.6	0.0	2.0	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
Cytidylate_kin	PF02224.18	gi|564288212|ref|YP_008874428.1|	-	0.055	13.2	0.1	0.12	12.1	0.1	1.7	1	1	0	1	1	1	0	Cytidylate	kinase
RNA_helicase	PF00910.22	gi|564288212|ref|YP_008874428.1|	-	0.055	13.9	0.0	0.097	13.1	0.0	1.5	1	1	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.15	gi|564288212|ref|YP_008874428.1|	-	0.058	13.3	0.8	1.8	8.5	0.0	2.2	2	0	0	2	2	2	0	NTPase
AAA_18	PF13238.6	gi|564288212|ref|YP_008874428.1|	-	0.065	13.8	0.3	0.23	12.0	0.1	2.0	2	1	0	2	2	2	0	AAA	domain
TsaE	PF02367.17	gi|564288212|ref|YP_008874428.1|	-	0.069	13.1	0.1	0.2	11.6	0.0	1.7	2	0	0	2	2	1	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_28	PF13521.6	gi|564288212|ref|YP_008874428.1|	-	0.081	13.2	0.1	0.18	12.0	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.20	gi|564288212|ref|YP_008874428.1|	-	0.095	12.6	0.0	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
AAA_7	PF12775.7	gi|564288212|ref|YP_008874428.1|	-	0.16	11.5	0.0	0.25	10.8	0.0	1.2	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
KAP_NTPase	PF07693.14	gi|564288212|ref|YP_008874428.1|	-	0.22	10.7	0.6	0.92	8.7	0.6	1.8	1	1	0	1	1	1	0	KAP	family	P-loop	domain
Rad17	PF03215.15	gi|564288212|ref|YP_008874428.1|	-	0.24	11.3	0.4	0.61	10.0	0.0	1.7	2	0	0	2	2	2	0	Rad17	P-loop	domain
FecCD	PF01032.18	gi|564288213|ref|YP_008874429.1|	-	9.1e-89	297.5	35.7	1.1e-88	297.2	35.7	1.1	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.17	gi|564288213|ref|YP_008874429.1|	-	0.00041	19.9	11.9	0.00041	19.9	11.9	2.4	1	1	0	2	2	2	1	ABC	3	transport	family
Pyr_redox_2	PF07992.14	gi|564288214|ref|YP_008874430.1|	-	7.9e-07	28.6	0.0	1.1e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|564288214|ref|YP_008874430.1|	-	2.7e-05	23.6	0.2	0.049	12.9	0.0	2.6	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.24	gi|564288214|ref|YP_008874430.1|	-	0.00011	21.5	1.5	0.00014	21.1	0.2	1.8	2	1	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.22	gi|564288214|ref|YP_008874430.1|	-	0.00011	21.4	1.4	0.00066	18.9	0.1	2.1	1	1	1	2	2	2	1	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.14	gi|564288214|ref|YP_008874430.1|	-	0.0015	17.3	0.0	0.0087	14.8	0.0	1.9	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.6	gi|564288214|ref|YP_008874430.1|	-	0.002	18.3	0.2	0.0048	17.1	0.2	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.7	gi|564288214|ref|YP_008874430.1|	-	0.0023	17.4	0.8	0.0023	17.4	0.8	1.7	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|564288214|ref|YP_008874430.1|	-	0.0027	17.0	0.0	0.0054	16.0	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.19	gi|564288214|ref|YP_008874430.1|	-	0.006	15.9	1.9	0.013	14.8	0.2	2.1	1	1	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.24	gi|564288214|ref|YP_008874430.1|	-	0.0082	15.8	14.0	0.02	14.5	0.9	3.2	1	1	1	3	3	3	2	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.12	gi|564288214|ref|YP_008874430.1|	-	0.07	12.2	0.8	0.23	10.4	0.1	2.0	2	0	0	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.6	gi|564288214|ref|YP_008874430.1|	-	0.32	11.0	5.7	0.77	9.7	0.4	2.9	3	0	0	3	3	3	0	FAD-NAD(P)-binding
RPE65	PF03055.15	gi|564288215|ref|YP_008874431.1|	-	1.3e-110	370.7	0.1	1.5e-110	370.6	0.1	1.0	1	0	0	1	1	1	1	Retinal	pigment	epithelial	membrane	protein
EamA	PF00892.20	gi|564288216|ref|YP_008874432.1|	-	1.1e-38	132.5	35.4	1.4e-20	73.8	7.9	2.0	2	0	0	2	2	2	2	EamA-like	transporter	family
SLC35F	PF06027.12	gi|564288216|ref|YP_008874432.1|	-	0.088	12.3	5.8	0.32	10.5	1.6	2.2	1	1	1	2	2	2	0	Solute	carrier	family	35
zf_Rg	PF17915.1	gi|564288217|ref|YP_008874433.1|	-	0.43	10.0	8.9	1.1	8.8	0.6	2.9	1	1	1	2	2	2	0	Reverse	gyrase	zinc	finger
RNHCP	PF12647.7	gi|564288217|ref|YP_008874433.1|	-	0.45	10.5	8.0	0.1	12.6	2.3	2.3	2	1	0	2	2	2	0	RNHCP	domain
Methyltransf_25	PF13649.6	gi|564288218|ref|YP_008874434.1|	-	1.3e-15	57.9	0.0	2.1e-15	57.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|564288218|ref|YP_008874434.1|	-	3.4e-14	53.2	0.0	5.4e-14	52.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.6	gi|564288218|ref|YP_008874434.1|	-	8.9e-10	38.7	0.0	1.1e-09	38.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|564288218|ref|YP_008874434.1|	-	2.5e-09	37.1	0.1	3.1e-09	36.8	0.1	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.12	gi|564288218|ref|YP_008874434.1|	-	2.7e-08	33.6	0.0	4e-08	33.1	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_12	PF08242.12	gi|564288218|ref|YP_008874434.1|	-	4.7e-08	33.7	0.1	7.1e-08	33.1	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|564288218|ref|YP_008874434.1|	-	0.00024	20.6	0.0	0.00025	20.5	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
Methyltransf_24	PF13578.6	gi|564288218|ref|YP_008874434.1|	-	0.0044	18.0	0.1	0.008	17.2	0.1	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
DUF938	PF06080.12	gi|564288218|ref|YP_008874434.1|	-	0.0054	16.5	0.0	0.0076	16.0	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF938)
MTS	PF05175.14	gi|564288218|ref|YP_008874434.1|	-	0.0077	15.8	0.0	0.0096	15.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_9	PF08003.11	gi|564288218|ref|YP_008874434.1|	-	0.017	14.1	0.0	0.022	13.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
Pox_MCEL	PF03291.16	gi|564288218|ref|YP_008874434.1|	-	0.017	14.2	0.0	0.021	13.9	0.0	1.1	1	0	0	1	1	1	0	mRNA	capping	enzyme
SHOCT	PF09851.9	gi|564288219|ref|YP_008874435.1|	-	1.5e-06	27.7	1.9	2.1e-06	27.3	1.9	1.2	1	0	0	1	1	1	1	Short	C-terminal	domain
DUF4381	PF14316.6	gi|564288219|ref|YP_008874435.1|	-	0.00048	20.4	0.2	0.00058	20.1	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4381)
FtsL	PF04999.13	gi|564288219|ref|YP_008874435.1|	-	0.0025	17.8	0.0	0.003	17.5	0.0	1.2	1	0	0	1	1	1	1	Cell	division	protein	FtsL
GvpG	PF05120.12	gi|564288219|ref|YP_008874435.1|	-	0.0034	17.4	0.8	0.0051	16.8	0.8	1.3	1	0	0	1	1	1	1	Gas	vesicle	protein	G
DUF1707	PF08044.11	gi|564288219|ref|YP_008874435.1|	-	0.0071	16.4	0.5	0.011	15.8	0.5	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1707)
PIG-P	PF08510.12	gi|564288219|ref|YP_008874435.1|	-	0.026	14.4	0.0	0.031	14.2	0.0	1.1	1	0	0	1	1	1	0	PIG-P
Phage_holin_2_2	PF10746.9	gi|564288219|ref|YP_008874435.1|	-	0.034	13.8	0.6	0.044	13.5	0.6	1.2	1	0	0	1	1	1	0	Phage	holin	T7	family,	holin	superfamily	II
VbhA	PF18495.1	gi|564288219|ref|YP_008874435.1|	-	0.042	13.7	0.6	0.062	13.2	0.6	1.3	1	0	0	1	1	1	0	Antitoxin	VbhA
CdvA	PF18822.1	gi|564288219|ref|YP_008874435.1|	-	0.054	13.3	0.1	0.065	13.1	0.1	1.1	1	0	0	1	1	1	0	CdvA-like	coiled-coil	domain
DUF2681	PF10883.8	gi|564288219|ref|YP_008874435.1|	-	0.082	13.3	0.1	0.11	12.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2681)
Pyridox_ox_2	PF12900.7	gi|564288220|ref|YP_008874436.1|	-	1.9e-14	53.8	0.2	2.3e-14	53.6	0.2	1.0	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
Putative_PNPOx	PF01243.20	gi|564288220|ref|YP_008874436.1|	-	0.00057	20.0	0.0	0.00084	19.5	0.0	1.2	1	0	0	1	1	1	1	Pyridoxamine	5'-phosphate	oxidase
FMN_bind_2	PF04299.12	gi|564288220|ref|YP_008874436.1|	-	0.1	12.3	0.0	0.13	12.0	0.0	1.3	1	1	0	1	1	1	0	Putative	FMN-binding	domain
AMP-binding	PF00501.28	gi|564288221|ref|YP_008874437.1|	-	2.9e-48	164.5	0.0	4.2e-48	164.0	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
Hemerythrin	PF01814.23	gi|564288221|ref|YP_008874437.1|	-	5.5e-09	36.7	6.6	5.5e-09	36.7	6.6	2.1	3	0	0	3	3	3	1	Hemerythrin	HHE	cation	binding	domain
AsnC_trans_reg2	PF17805.1	gi|564288221|ref|YP_008874437.1|	-	0.071	13.3	0.0	0.69	10.1	0.0	2.4	2	0	0	2	2	2	0	AsnC-like	ligand	binding	domain
Phage_holin_3_6	PF07332.11	gi|564288222|ref|YP_008874438.1|	-	0.26	11.3	7.5	0.29	11.2	7.5	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DZR	PF12773.7	gi|564288223|ref|YP_008874439.1|	-	0.12	12.5	0.8	0.19	11.8	0.8	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.7	gi|564288223|ref|YP_008874439.1|	-	0.23	11.5	1.6	0.57	10.2	1.6	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Rrf2	PF02082.20	gi|564288225|ref|YP_008874441.1|	-	0.035	14.4	0.2	0.11	12.9	0.2	1.8	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_IclR	PF09339.10	gi|564288225|ref|YP_008874441.1|	-	0.12	12.2	1.6	1	9.2	1.3	2.8	3	1	0	3	3	3	0	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.12	gi|564288225|ref|YP_008874441.1|	-	0.19	11.5	3.3	1.4	8.8	1.1	2.7	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Amidohydro_1	PF01979.20	gi|564288226|ref|YP_008874442.1|	-	8.4e-49	166.7	0.1	9.9e-49	166.5	0.1	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564288226|ref|YP_008874442.1|	-	3e-19	69.9	2.6	6e-14	52.4	0.6	2.2	2	0	0	2	2	2	2	Amidohydrolase	family
TatD_DNase	PF01026.21	gi|564288226|ref|YP_008874442.1|	-	0.014	14.8	0.1	0.023	14.1	0.1	1.3	1	0	0	1	1	1	0	TatD	related	DNase
Amidohydro_1	PF01979.20	gi|564288227|ref|YP_008874443.1|	-	2.2e-17	63.4	0.0	4e-17	62.5	0.0	1.4	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564288227|ref|YP_008874443.1|	-	7.4e-06	25.7	11.8	0.012	15.1	3.5	3.1	2	1	1	3	3	3	3	Amidohydrolase	family
Urease_alpha	PF00449.20	gi|564288227|ref|YP_008874443.1|	-	0.13	12.6	0.4	0.44	10.9	0.4	1.9	1	0	0	1	1	1	0	Urease	alpha-subunit,	N-terminal	domain
PALP	PF00291.25	gi|564288228|ref|YP_008874444.1|	-	4.3e-71	239.7	0.8	5.2e-71	239.4	0.8	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Bac_luciferase	PF00296.20	gi|564288229|ref|YP_008874445.1|	-	3.1e-59	200.9	0.0	3.8e-59	200.7	0.0	1.0	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
DUF3243	PF11588.8	gi|564288229|ref|YP_008874445.1|	-	0.039	14.3	0.3	0.56	10.6	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3243)
BPD_transp_2	PF02653.16	gi|564288230|ref|YP_008874446.1|	-	6.6e-38	130.4	28.9	6.6e-38	130.4	28.9	1.5	1	1	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.16	gi|564288231|ref|YP_008874447.1|	-	1.8e-34	119.1	32.7	1.8e-34	119.1	32.7	1.7	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.27	gi|564288232|ref|YP_008874448.1|	-	2.3e-47	160.9	0.0	5e-29	101.6	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|564288232|ref|YP_008874448.1|	-	7.4e-10	39.1	0.9	0.00054	19.9	0.0	2.6	3	0	0	3	3	3	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|564288232|ref|YP_008874448.1|	-	0.012	15.4	0.6	0.03	14.0	0.0	1.9	3	0	0	3	3	3	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564288232|ref|YP_008874448.1|	-	0.013	15.5	0.1	0.39	10.6	0.0	2.3	2	0	0	2	2	2	0	RsgA	GTPase
AAA_27	PF13514.6	gi|564288232|ref|YP_008874448.1|	-	0.03	13.9	0.0	0.056	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_15	PF13175.6	gi|564288232|ref|YP_008874448.1|	-	0.038	13.7	0.0	0.22	11.2	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.6	gi|564288232|ref|YP_008874448.1|	-	0.039	13.7	0.1	1.2	8.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|564288232|ref|YP_008874448.1|	-	0.064	13.8	0.0	0.11	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.18	gi|564288232|ref|YP_008874448.1|	-	0.19	11.5	0.1	0.36	10.6	0.1	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
Bmp	PF02608.14	gi|564288233|ref|YP_008874449.1|	-	4e-44	150.8	0.0	4.9e-44	150.5	0.0	1.0	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Bmp	PF02608.14	gi|564288234|ref|YP_008874450.1|	-	4.1e-43	147.5	0.0	5.1e-43	147.2	0.0	1.0	1	0	0	1	1	1	1	ABC	transporter	substrate-binding	protein	PnrA-like
Amidohydro_3	PF07969.11	gi|564288235|ref|YP_008874451.1|	-	2.2e-26	93.4	3.2	4.1e-25	89.2	3.2	2.3	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|564288235|ref|YP_008874451.1|	-	6.6e-12	45.4	0.0	1.2e-05	24.9	0.0	2.5	2	1	0	2	2	2	2	Amidohydrolase	family
Peptidase_M20	PF01546.28	gi|564288236|ref|YP_008874452.1|	-	2.6e-33	115.5	0.9	6e-33	114.3	0.6	1.7	2	0	0	2	2	2	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|564288236|ref|YP_008874452.1|	-	1e-07	31.8	0.0	2.1e-07	30.9	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.17	gi|564288236|ref|YP_008874452.1|	-	5.1e-06	26.3	0.0	9.1e-06	25.5	0.0	1.5	1	0	0	1	1	1	1	Peptidase	family	M28
Fer2_2	PF01799.20	gi|564288237|ref|YP_008874453.1|	-	1.6e-29	101.8	0.0	3.3e-29	100.7	0.0	1.5	1	0	0	1	1	1	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|564288237|ref|YP_008874453.1|	-	4e-05	23.5	1.3	4e-05	23.5	1.3	3.1	3	1	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|564288237|ref|YP_008874453.1|	-	0.0013	18.7	0.2	0.0025	17.8	0.2	1.5	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|564288238|ref|YP_008874454.1|	-	4.3e-145	484.3	4.2	5.8e-145	483.8	4.2	1.2	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|564288238|ref|YP_008874454.1|	-	1.5e-22	80.0	1.5	2.8e-22	79.1	1.5	1.5	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
MarR_2	PF12802.7	gi|564288239|ref|YP_008874455.1|	-	3.3e-06	26.9	0.0	6e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.6	gi|564288239|ref|YP_008874455.1|	-	0.0056	16.6	0.0	0.0073	16.3	0.0	1.2	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.10	gi|564288239|ref|YP_008874455.1|	-	0.0059	16.4	0.0	0.009	15.8	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|564288239|ref|YP_008874455.1|	-	0.019	15.1	0.0	0.03	14.5	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Shadoo	PF14999.6	gi|564288239|ref|YP_008874455.1|	-	0.035	14.2	0.2	0.046	13.8	0.2	1.1	1	0	0	1	1	1	0	Shadow	of	prion	protein,	neuroprotective
TrmB	PF01978.19	gi|564288239|ref|YP_008874455.1|	-	0.21	11.5	0.0	0.3	11.0	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.17	gi|564288239|ref|YP_008874455.1|	-	0.25	11.2	0.0	0.43	10.5	0.0	1.4	1	1	0	1	1	1	0	TFIIE	alpha	subunit
PemK_toxin	PF02452.17	gi|564288240|ref|YP_008874456.1|	-	0.081	13.3	0.0	0.092	13.1	0.0	1.1	1	0	0	1	1	1	0	PemK-like,	MazF-like	toxin	of	type	II	toxin-antitoxin	system
Fer2_2	PF01799.20	gi|564288241|ref|YP_008874457.1|	-	9.5e-33	112.1	4.9	1e-32	112.0	0.1	2.2	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.27	gi|564288241|ref|YP_008874457.1|	-	1.2e-08	34.8	0.5	1.2e-08	34.8	0.5	2.5	3	2	0	3	3	3	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.6	gi|564288241|ref|YP_008874457.1|	-	4.8e-06	26.5	1.1	1.1e-05	25.3	0.2	2.1	2	1	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.6	gi|564288241|ref|YP_008874457.1|	-	0.0019	18.2	1.1	0.0084	16.1	1.1	2.1	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.18	gi|564288242|ref|YP_008874458.1|	-	1.3e-149	499.2	0.1	1.7e-149	498.8	0.1	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.22	gi|564288242|ref|YP_008874458.1|	-	4e-24	85.1	0.1	8.8e-24	84.0	0.1	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DrsE	PF02635.15	gi|564288243|ref|YP_008874459.1|	-	6.6e-31	107.1	0.0	7.4e-31	107.0	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE	PF02635.15	gi|564288244|ref|YP_008874460.1|	-	2.2e-08	34.5	0.0	2.2e-08	34.5	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DsrH	PF04077.12	gi|564288245|ref|YP_008874461.1|	-	2.5e-05	24.3	0.6	0.0002	21.4	0.6	1.9	1	1	0	1	1	1	1	DsrH	like	protein
XdhC_C	PF13478.6	gi|564288246|ref|YP_008874462.1|	-	4.1e-36	124.3	1.8	3.7e-35	121.2	0.1	2.3	2	0	0	2	2	2	1	XdhC	Rossmann	domain
XdhC_CoxI	PF02625.16	gi|564288246|ref|YP_008874462.1|	-	1.5e-17	63.5	1.4	1.5e-17	63.5	1.4	3.6	5	1	0	5	5	5	1	XdhC	and	CoxI	family
Pyr_redox	PF00070.27	gi|564288246|ref|YP_008874462.1|	-	0.004	17.7	1.6	0.046	14.3	0.0	2.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.14	gi|564288246|ref|YP_008874462.1|	-	0.0062	15.8	2.4	0.022	14.0	0.1	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.18	gi|564288246|ref|YP_008874462.1|	-	0.0093	16.2	1.7	4.4	7.6	0.0	2.7	2	0	0	2	2	2	2	TrkA-N	domain
3HCDH_N	PF02737.18	gi|564288246|ref|YP_008874462.1|	-	0.025	14.5	1.5	0.66	9.8	0.3	2.5	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
AdoHcyase_NAD	PF00670.21	gi|564288246|ref|YP_008874462.1|	-	0.045	13.8	1.6	0.074	13.1	0.2	1.9	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.19	gi|564288246|ref|YP_008874462.1|	-	0.061	12.7	0.9	7	6.0	0.0	2.7	3	0	0	3	3	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ATP-synt_ab_Xtn	PF16886.5	gi|564288246|ref|YP_008874462.1|	-	0.12	12.2	0.0	0.24	11.3	0.0	1.5	1	0	0	1	1	1	0	ATPsynthase	alpha/beta	subunit	N-term	extension
AIRS_C	PF02769.22	gi|564288247|ref|YP_008874463.1|	-	5.1e-19	68.9	0.0	9e-19	68.1	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.24	gi|564288247|ref|YP_008874463.1|	-	2e-11	44.4	1.6	6e-11	42.8	1.6	1.8	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
TusA	PF01206.17	gi|564288248|ref|YP_008874464.1|	-	1.2e-15	57.1	0.0	1.5e-15	56.8	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.9	gi|564288248|ref|YP_008874464.1|	-	0.012	15.5	0.1	0.013	15.4	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
NTP_transf_3	PF12804.7	gi|564288250|ref|YP_008874466.1|	-	3.9e-37	128.1	1.0	4.8e-37	127.8	1.0	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.19	gi|564288250|ref|YP_008874466.1|	-	0.012	15.5	0.0	0.016	15.2	0.0	1.2	1	0	0	1	1	1	0	Cytidylyltransferase
Ribonuc_L-PSP	PF01042.21	gi|564288251|ref|YP_008874467.1|	-	7.1e-38	129.3	0.1	7.9e-38	129.2	0.1	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
Amidohydro_1	PF01979.20	gi|564288252|ref|YP_008874468.1|	-	5.2e-67	226.6	0.2	6.2e-67	226.3	0.2	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|564288252|ref|YP_008874468.1|	-	4.4e-11	42.9	3.2	4.5e-11	42.9	0.5	2.0	2	0	0	2	2	2	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|564288252|ref|YP_008874468.1|	-	0.0024	17.3	0.0	0.004	16.5	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Ribosomal_S17e	PF00833.18	gi|564288253|ref|YP_008874469.1|	-	0.055	13.4	0.0	0.057	13.3	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	S17
NAD_synthase	PF02540.17	gi|564288254|ref|YP_008874470.1|	-	1.2e-46	158.8	0.0	1.5e-46	158.5	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
HTH_Tnp_ISL3	PF13542.6	gi|564288254|ref|YP_008874470.1|	-	0.026	13.9	0.1	0.074	12.5	0.1	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_38	PF13936.6	gi|564288254|ref|YP_008874470.1|	-	0.056	13.2	0.0	0.14	11.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.6	gi|564288254|ref|YP_008874470.1|	-	0.13	12.1	0.1	0.34	10.8	0.1	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_31	PF13560.6	gi|564288254|ref|YP_008874470.1|	-	0.22	11.9	1.4	8.7	6.8	0.1	2.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
Zn_Tnp_IS1595	PF12760.7	gi|564288255|ref|YP_008874471.1|	-	0.046	13.7	0.7	0.082	12.9	0.7	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|564288255|ref|YP_008874471.1|	-	0.44	10.3	2.0	0.51	10.1	0.4	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
FlaC_arch	PF05377.11	gi|564288256|ref|YP_008874472.1|	-	1.1e-06	28.9	33.9	0.44	11.0	0.1	8.0	4	3	4	8	8	8	2	Flagella	accessory	protein	C	(FlaC)
FliJ	PF02050.16	gi|564288256|ref|YP_008874472.1|	-	2.5e-06	27.7	42.5	0.0002	21.6	7.5	5.1	4	2	1	5	5	4	2	Flagellar	FliJ	protein
TPR_MLP1_2	PF07926.12	gi|564288256|ref|YP_008874472.1|	-	1.1e-05	25.5	60.0	0.043	13.9	20.2	6.0	1	1	3	5	5	5	3	TPR/MLP1/MLP2-like	protein
ABC_tran_CTD	PF16326.5	gi|564288256|ref|YP_008874472.1|	-	2.5e-05	24.4	54.4	0.031	14.5	4.2	5.7	3	1	3	6	6	6	3	ABC	transporter	C-terminal	domain
DUF2353	PF09789.9	gi|564288256|ref|YP_008874472.1|	-	6.4e-05	22.5	14.6	6.4e-05	22.5	14.6	3.1	2	1	1	3	3	3	2	Uncharacterized	coiled-coil	protein	(DUF2353)
AAA_13	PF13166.6	gi|564288256|ref|YP_008874472.1|	-	6.7e-05	21.8	34.4	0.28	9.8	34.1	3.6	1	1	1	2	2	2	1	AAA	domain
Atg14	PF10186.9	gi|564288256|ref|YP_008874472.1|	-	0.0001	21.5	38.0	0.00071	18.8	11.9	3.0	2	1	1	3	3	3	2	Vacuolar	sorting	38	and	autophagy-related	subunit	14
SMC_N	PF02463.19	gi|564288256|ref|YP_008874472.1|	-	0.00011	21.8	1.2	0.094	12.1	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
CENP-F_leu_zip	PF10473.9	gi|564288256|ref|YP_008874472.1|	-	0.00016	21.7	57.2	0.025	14.6	11.0	4.8	2	2	3	5	5	5	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
AAA_23	PF13476.6	gi|564288256|ref|YP_008874472.1|	-	0.00016	22.2	39.3	49	4.3	39.3	3.7	1	1	0	1	1	1	0	AAA	domain
Spc7	PF08317.11	gi|564288256|ref|YP_008874472.1|	-	0.00018	20.5	56.0	0.024	13.5	18.6	3.7	2	2	1	3	3	3	3	Spc7	kinetochore	protein
DUF1664	PF07889.12	gi|564288256|ref|YP_008874472.1|	-	0.00019	21.5	29.5	0.35	10.9	6.3	5.0	3	1	1	4	4	4	3	Protein	of	unknown	function	(DUF1664)
GAS	PF13851.6	gi|564288256|ref|YP_008874472.1|	-	0.0005	19.5	45.2	0.064	12.6	3.3	4.3	3	1	1	4	4	4	3	Growth-arrest	specific	micro-tubule	binding
TolA_bind_tri	PF16331.5	gi|564288256|ref|YP_008874472.1|	-	0.00079	19.5	40.9	0.034	14.2	0.2	6.4	4	3	2	6	6	6	2	TolA	binding	protein	trimerisation
DUF724	PF05266.14	gi|564288256|ref|YP_008874472.1|	-	0.001	18.9	8.5	0.001	18.9	8.5	4.0	2	2	2	4	4	4	1	Protein	of	unknown	function	(DUF724)
NPV_P10	PF05531.12	gi|564288256|ref|YP_008874472.1|	-	0.001	19.5	29.0	0.066	13.7	1.2	5.8	3	1	2	5	5	5	2	Nucleopolyhedrovirus	P10	protein
CorA	PF01544.18	gi|564288256|ref|YP_008874472.1|	-	0.0015	17.9	10.9	0.0015	17.9	10.9	4.0	1	1	3	4	4	4	1	CorA-like	Mg2+	transporter	protein
Laminin_II	PF06009.12	gi|564288256|ref|YP_008874472.1|	-	0.0022	18.0	36.7	0.046	13.7	9.4	4.2	2	2	3	5	5	5	3	Laminin	Domain	II
AAA_21	PF13304.6	gi|564288256|ref|YP_008874472.1|	-	0.0028	17.5	0.5	0.0028	17.5	0.5	1.9	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
HemX	PF04375.14	gi|564288256|ref|YP_008874472.1|	-	0.0062	15.9	8.3	0.0062	15.9	8.3	4.1	2	2	2	4	4	4	1	HemX,	putative	uroporphyrinogen-III	C-methyltransferase
Seryl_tRNA_N	PF02403.22	gi|564288256|ref|YP_008874472.1|	-	0.0073	16.5	40.6	0.016	15.4	2.6	5.2	3	2	1	4	4	4	2	Seryl-tRNA	synthetase	N-terminal	domain
Alpha-2-MRAP_C	PF06401.11	gi|564288256|ref|YP_008874472.1|	-	0.0077	16.2	11.9	0.0077	16.2	11.9	2.5	2	1	0	2	2	2	1	Alpha-2-macroglobulin	RAP,	C-terminal	domain
DUF5082	PF16888.5	gi|564288256|ref|YP_008874472.1|	-	0.0088	16.3	37.9	0.085	13.1	5.8	4.3	2	2	2	4	4	4	2	Domain	of	unknown	function	(DUF5082)
Fez1	PF06818.15	gi|564288256|ref|YP_008874472.1|	-	0.01	16.3	48.5	0.22	11.9	19.9	3.2	1	1	2	3	3	3	0	Fez1
TMF_TATA_bd	PF12325.8	gi|564288256|ref|YP_008874472.1|	-	0.011	16.0	55.8	0.05	13.8	7.1	5.4	2	2	3	5	5	3	0	TATA	element	modulatory	factor	1	TATA	binding
Baculo_PEP_C	PF04513.12	gi|564288256|ref|YP_008874472.1|	-	0.011	15.7	26.2	0.016	15.3	3.1	4.3	2	2	1	3	3	3	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
PspA_IM30	PF04012.12	gi|564288256|ref|YP_008874472.1|	-	0.014	15.0	51.3	0.23	11.0	21.1	3.2	2	2	0	2	2	2	0	PspA/IM30	family
Phage_GP20	PF06810.11	gi|564288256|ref|YP_008874472.1|	-	0.016	15.0	40.3	0.31	10.8	3.6	4.4	2	2	1	4	4	4	0	Phage	minor	structural	protein	GP20
Sec34	PF04136.15	gi|564288256|ref|YP_008874472.1|	-	0.018	14.9	28.5	1.5	8.7	0.1	5.4	2	2	1	5	5	5	0	Sec34-like	family
Med14	PF08638.11	gi|564288256|ref|YP_008874472.1|	-	0.022	14.2	2.1	0.39	10.1	0.1	3.2	2	1	0	3	3	3	0	Mediator	complex	subunit	MED14
Exonuc_VII_L	PF02601.15	gi|564288256|ref|YP_008874472.1|	-	0.034	13.7	35.9	0.11	12.0	12.6	2.6	1	1	0	2	2	2	0	Exonuclease	VII,	large	subunit
ApbE	PF02424.15	gi|564288256|ref|YP_008874472.1|	-	0.035	13.6	0.3	0.035	13.6	0.3	2.0	2	1	0	2	2	2	0	ApbE	family
FPP	PF05911.11	gi|564288256|ref|YP_008874472.1|	-	0.05	11.8	40.6	0.02	13.1	18.0	2.3	1	1	1	2	2	2	0	Filament-like	plant	protein,	long	coiled-coil
Tropomyosin_1	PF12718.7	gi|564288256|ref|YP_008874472.1|	-	0.07	13.3	57.0	1.7	8.8	11.3	4.2	2	2	0	2	2	2	0	Tropomyosin	like
MscS_porin	PF12795.7	gi|564288256|ref|YP_008874472.1|	-	0.13	11.8	64.3	0.23	11.0	25.7	4.2	2	2	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
MAD	PF05557.13	gi|564288256|ref|YP_008874472.1|	-	0.16	10.3	46.8	0.014	13.8	18.3	2.3	1	1	0	2	2	2	0	Mitotic	checkpoint	protein
APG6_N	PF17675.1	gi|564288256|ref|YP_008874472.1|	-	0.17	12.5	67.0	1e+02	3.4	31.5	5.3	2	2	0	2	2	2	0	Apg6	coiled-coil	region
COG2	PF06148.11	gi|564288256|ref|YP_008874472.1|	-	0.21	11.7	35.5	1.2	9.2	5.0	5.1	2	2	3	5	5	5	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF3584	PF12128.8	gi|564288256|ref|YP_008874472.1|	-	0.29	8.6	53.6	0.18	9.3	47.1	2.6	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3584)
WEMBL	PF05701.11	gi|564288256|ref|YP_008874472.1|	-	0.42	9.3	50.1	0.059	12.1	23.0	2.8	1	1	2	3	3	3	0	Weak	chloroplast	movement	under	blue	light
Filament	PF00038.21	gi|564288256|ref|YP_008874472.1|	-	0.67	9.5	53.0	0.11	12.1	33.8	3.3	1	1	2	3	3	3	0	Intermediate	filament	protein
DUF745	PF05335.13	gi|564288256|ref|YP_008874472.1|	-	0.77	9.5	37.0	0.023	14.4	12.8	3.5	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF745)
Jnk-SapK_ap_N	PF09744.9	gi|564288256|ref|YP_008874472.1|	-	0.8	9.9	60.3	0.021	15.0	16.8	4.0	2	2	2	4	4	4	0	JNK_SAPK-associated	protein-1
IFT57	PF10498.9	gi|564288256|ref|YP_008874472.1|	-	0.85	8.5	35.4	0.11	11.4	8.9	3.9	2	1	1	4	4	4	0	Intra-flagellar	transport	protein	57
ATG16	PF08614.11	gi|564288256|ref|YP_008874472.1|	-	0.98	9.6	64.5	0.75	10.0	28.8	4.2	2	2	0	2	2	2	0	Autophagy	protein	16	(ATG16)
Vac_Fusion	PF02346.16	gi|564288256|ref|YP_008874472.1|	-	0.99	9.1	14.4	31	4.3	0.0	4.8	3	1	1	4	4	4	0	Chordopoxvirus	multifunctional	envelope	protein	A27
DUF4201	PF13870.6	gi|564288256|ref|YP_008874472.1|	-	1	9.0	39.8	3	7.6	12.7	4.5	2	2	1	4	4	4	0	Domain	of	unknown	function	(DUF4201)
MCPsignal	PF00015.21	gi|564288256|ref|YP_008874472.1|	-	1.3	8.8	21.6	0.22	11.3	1.3	3.8	2	2	3	5	5	5	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DHR10	PF18595.1	gi|564288256|ref|YP_008874472.1|	-	1.4	9.0	71.2	0.093	12.8	8.4	5.7	2	2	3	5	5	5	0	Designed	helical	repeat	protein	10	domain
Fib_alpha	PF08702.10	gi|564288256|ref|YP_008874472.1|	-	1.4	9.1	33.9	0.22	11.7	4.2	4.4	2	2	0	4	4	4	0	Fibrinogen	alpha/beta	chain	family
CALCOCO1	PF07888.11	gi|564288256|ref|YP_008874472.1|	-	2	7.2	52.4	0.039	12.8	18.9	2.6	2	1	1	3	3	3	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Cob_adeno_trans	PF01923.18	gi|564288256|ref|YP_008874472.1|	-	2.1	8.5	28.2	0.68	10.1	2.9	4.2	2	2	1	3	3	3	0	Cobalamin	adenosyltransferase
DUF2730	PF10805.8	gi|564288256|ref|YP_008874472.1|	-	2.4	8.3	27.9	4.1	7.6	1.2	5.2	3	1	3	6	6	6	0	Protein	of	unknown	function	(DUF2730)
Mod_r	PF07200.13	gi|564288256|ref|YP_008874472.1|	-	2.7	8.1	42.3	1.2	9.2	11.8	4.3	2	2	3	5	5	5	0	Modifier	of	rudimentary	(Mod(r))	protein
HIP1_clath_bdg	PF16515.5	gi|564288256|ref|YP_008874472.1|	-	3.1	8.4	53.6	2.8	8.6	10.5	4.9	2	2	3	5	5	5	0	Clathrin-binding	domain	of	Huntingtin-interacting	protein	1
Prefoldin_2	PF01920.20	gi|564288256|ref|YP_008874472.1|	-	3.3	7.7	51.3	1.9	8.5	4.2	7.7	3	3	4	7	7	7	0	Prefoldin	subunit
End3	PF12761.7	gi|564288256|ref|YP_008874472.1|	-	3.5	7.7	42.6	0.26	11.4	13.6	3.4	2	1	1	3	3	3	0	Actin	cytoskeleton-regulatory	complex	protein	END3
HOOK	PF05622.12	gi|564288256|ref|YP_008874472.1|	-	3.5	5.6	56.4	2.2	6.3	29.5	2.8	1	1	1	2	2	2	0	HOOK	protein
FapA	PF03961.13	gi|564288256|ref|YP_008874472.1|	-	3.9	6.0	31.6	1.9	7.0	11.2	3.8	2	2	2	4	4	4	0	Flagellar	Assembly	Protein	A
DUF948	PF06103.11	gi|564288256|ref|YP_008874472.1|	-	4	7.8	22.5	0.17	12.2	2.2	5.1	3	2	2	5	5	5	0	Bacterial	protein	of	unknown	function	(DUF948)
Prominin	PF05478.11	gi|564288256|ref|YP_008874472.1|	-	5.2	4.9	25.6	0.18	9.8	7.0	2.8	1	1	2	3	3	3	0	Prominin
YscO-like	PF16789.5	gi|564288256|ref|YP_008874472.1|	-	6.1	6.8	43.0	5.3	7.0	11.0	4.4	2	2	1	3	3	3	0	YscO-like	protein
DUF4407	PF14362.6	gi|564288256|ref|YP_008874472.1|	-	6.7	6.0	50.9	0.29	10.4	18.7	3.4	1	1	1	2	2	1	0	Domain	of	unknown	function	(DUF4407)
Snapin_Pallidin	PF14712.6	gi|564288256|ref|YP_008874472.1|	-	6.9	7.2	35.3	7.4	7.1	2.7	4.8	3	1	0	4	4	4	0	Snapin/Pallidin
FAM76	PF16046.5	gi|564288256|ref|YP_008874472.1|	-	7.4	5.8	23.4	0.61	9.4	6.1	2.2	2	0	0	2	2	2	0	FAM76	protein
Fzo_mitofusin	PF04799.13	gi|564288256|ref|YP_008874472.1|	-	7.7	6.0	27.2	3.1	7.3	1.6	5.1	3	1	2	5	5	5	0	fzo-like	conserved	region
ApoO	PF09769.9	gi|564288256|ref|YP_008874472.1|	-	8.2	6.4	12.8	65	3.5	0.3	4.3	2	2	1	3	3	3	0	Apolipoprotein	O
BLOC1_2	PF10046.9	gi|564288256|ref|YP_008874472.1|	-	8.3	6.8	33.9	6.3	7.2	2.2	5.5	3	2	2	5	5	5	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Spc24	PF08286.11	gi|564288256|ref|YP_008874472.1|	-	9.4	6.5	52.5	0.12	12.6	4.7	7.1	2	2	3	5	5	5	0	Spc24	subunit	of	Ndc80
GAF_2	PF13185.6	gi|564288258|ref|YP_008874474.1|	-	1.2e-46	158.4	1.2	1.2e-15	58.0	0.2	4.4	4	0	0	4	4	4	4	GAF	domain
BAT	PF15915.5	gi|564288258|ref|YP_008874474.1|	-	8.6e-38	129.7	3.3	8.6e-38	129.7	3.3	2.1	2	0	0	2	2	2	1	GAF	and	HTH_10	associated	domain
GAF	PF01590.26	gi|564288258|ref|YP_008874474.1|	-	4.2e-22	79.2	0.0	7.5e-07	29.9	0.0	4.5	4	0	0	4	4	4	3	GAF	domain
Response_reg	PF00072.24	gi|564288258|ref|YP_008874474.1|	-	9.4e-20	70.9	0.0	3e-19	69.2	0.0	1.9	1	0	0	1	1	1	1	Response	regulator	receiver	domain
GAF_3	PF13492.6	gi|564288258|ref|YP_008874474.1|	-	1.9e-19	70.3	0.0	3.1e-05	24.3	0.0	4.6	4	0	0	4	4	4	3	GAF	domain
HTH_10	PF04967.12	gi|564288258|ref|YP_008874474.1|	-	1.2e-16	60.2	0.0	4.8e-16	58.3	0.0	2.1	2	0	0	2	2	2	1	HTH	DNA	binding	domain
OKR_DC_1_N	PF03709.15	gi|564288258|ref|YP_008874474.1|	-	8.9e-06	26.0	0.1	0.00015	22.0	0.0	3.0	2	0	0	2	2	2	1	Orn/Lys/Arg	decarboxylase,	N-terminal	domain
Sigma70_r4	PF04545.16	gi|564288258|ref|YP_008874474.1|	-	0.00069	19.1	0.0	0.0024	17.4	0.0	2.0	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|564288258|ref|YP_008874474.1|	-	0.0036	17.1	0.0	0.0088	15.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.7	gi|564288258|ref|YP_008874474.1|	-	0.0043	17.1	0.0	0.073	13.1	0.0	2.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
GerE	PF00196.19	gi|564288258|ref|YP_008874474.1|	-	0.0088	15.6	0.0	0.038	13.5	0.0	2.1	1	1	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4_2	PF08281.12	gi|564288258|ref|YP_008874474.1|	-	0.014	15.0	0.2	0.24	11.1	0.0	3.1	2	1	0	2	2	2	0	Sigma-70,	region	4
DUF1492	PF07374.11	gi|564288258|ref|YP_008874474.1|	-	0.22	11.7	2.0	22	5.3	0.0	3.1	4	0	0	4	4	3	0	Protein	of	unknown	function	(DUF1492)
DUF4349	PF14257.6	gi|564288258|ref|YP_008874474.1|	-	0.41	10.0	5.2	1.1	8.6	5.2	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4349)
HalOD1	PF18545.1	gi|564288259|ref|YP_008874475.1|	-	4.4e-24	84.5	0.4	5e-24	84.3	0.4	1.0	1	0	0	1	1	1	1	Halobacterial	output	domain	1
DUF4131	PF13567.6	gi|564288260|ref|YP_008874476.1|	-	0.089	12.4	2.0	3	7.5	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
HTH_11	PF08279.12	gi|564288260|ref|YP_008874476.1|	-	0.11	12.5	0.1	0.27	11.2	0.1	1.7	1	0	0	1	1	1	0	HTH	domain
DUF3071	PF11268.8	gi|564288262|ref|YP_008874478.1|	-	0.066	13.3	0.1	0.076	13.1	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3071)
NTP_transferase	PF00483.23	gi|564288263|ref|YP_008874479.1|	-	3.1e-41	141.6	0.0	3.4e-41	141.4	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|564288263|ref|YP_008874479.1|	-	2.2e-14	54.1	0.0	2.5e-14	53.9	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|564288263|ref|YP_008874479.1|	-	6.3e-06	26.1	0.0	1.8e-05	24.6	0.0	1.7	2	0	0	2	2	2	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|564288264|ref|YP_008874481.1|	-	5.5e-09	36.0	0.4	1.7e-08	34.5	0.3	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288264|ref|YP_008874481.1|	-	3.9e-06	26.9	0.6	0.00048	20.1	0.6	2.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_7C	PF02709.14	gi|564288264|ref|YP_008874481.1|	-	9.9e-06	25.1	0.8	1.7e-05	24.4	0.8	1.5	1	0	0	1	1	1	1	N-terminal	domain	of	galactosyltransferase
Glyco_tranf_2_2	PF10111.9	gi|564288264|ref|YP_008874481.1|	-	2.5e-05	23.9	0.0	0.12	11.9	0.0	2.3	2	0	0	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.6	gi|564288264|ref|YP_008874481.1|	-	2.5e-05	24.3	0.0	3.7e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.6	gi|564288264|ref|YP_008874481.1|	-	0.0092	15.5	0.0	0.032	13.7	0.0	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
PrpR_N	PF06506.11	gi|564288264|ref|YP_008874481.1|	-	0.096	12.3	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	Propionate	catabolism	activator
PMT	PF02366.18	gi|564288265|ref|YP_008874482.1|	-	0.12	11.9	0.0	0.14	11.7	0.0	1.0	1	0	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
GFO_IDH_MocA	PF01408.22	gi|564288266|ref|YP_008874483.1|	-	4.1e-20	72.8	0.0	6.8e-20	72.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
CoA_binding_2	PF13380.6	gi|564288266|ref|YP_008874483.1|	-	0.061	13.8	0.1	0.19	12.2	0.1	1.9	1	1	0	1	1	1	0	CoA	binding	domain
DUF1349	PF07081.11	gi|564288266|ref|YP_008874483.1|	-	0.066	12.9	0.1	0.13	12.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1349)
Polysacc_synt_3	PF13440.6	gi|564288267|ref|YP_008874484.1|	-	4.5e-76	255.9	4.8	4.5e-76	255.9	4.8	1.8	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt	PF01943.17	gi|564288267|ref|YP_008874484.1|	-	9.9e-31	107.1	7.3	9.9e-31	107.1	7.3	2.4	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|564288267|ref|YP_008874484.1|	-	4.7e-14	52.6	19.1	4.7e-14	52.6	19.1	3.1	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
Insulin_TMD	PF17870.1	gi|564288267|ref|YP_008874484.1|	-	0.14	12.3	3.2	0.88	9.7	1.8	2.9	2	0	0	2	2	2	0	Insulin	receptor	trans-membrane	segment
DUF5010_C	PF18099.1	gi|564288269|ref|YP_008874486.1|	-	8.3e-69	228.8	13.7	6.9e-24	84.1	0.8	3.6	3	0	0	3	3	3	3	DUF5010	C-terminal	domain
CBM_6	PF03422.15	gi|564288269|ref|YP_008874486.1|	-	2e-52	176.8	21.8	4.2e-19	69.1	2.4	4.3	4	0	0	4	4	4	3	Carbohydrate	binding	module	(family	6)
Glyco_hydro_114	PF03537.13	gi|564288269|ref|YP_008874486.1|	-	7.7e-05	22.1	3.6	0.58	9.4	0.0	3.3	3	0	0	3	3	3	3	Glycoside-hydrolase	family	GH114
Endotoxin_C	PF03944.14	gi|564288269|ref|YP_008874486.1|	-	0.00022	21.6	0.2	0.74	10.1	0.0	4.3	4	1	0	4	4	4	1	delta	endotoxin
TcfC	PF16967.5	gi|564288269|ref|YP_008874486.1|	-	0.017	14.6	0.0	5.8	6.5	0.0	3.6	3	0	0	3	3	3	0	E-set	like	domain
Neuraminidase	PF18413.1	gi|564288269|ref|YP_008874486.1|	-	1.2	8.7	8.5	1.5	8.5	0.3	3.1	2	1	1	3	3	3	0	Neuraminidase-like	domain
NESP55	PF06390.12	gi|564288269|ref|YP_008874486.1|	-	4.6	6.8	10.4	9.6	5.7	10.4	1.4	1	0	0	1	1	1	0	Neuroendocrine-specific	golgi	protein	P55	(NESP55)
Mtd_N	PF18454.1	gi|564288270|ref|YP_008874487.1|	-	0.0058	16.6	0.1	0.025	14.6	0.1	2.1	2	0	0	2	2	2	1	Major	tropism	determinant	N-terminal	domain
Glycos_transf_1	PF00534.20	gi|564288317|ref|YP_008874489.1|	-	1.3e-34	119.2	0.0	2e-34	118.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288317|ref|YP_008874489.1|	-	7.2e-31	107.4	0.0	1.3e-30	106.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288317|ref|YP_008874489.1|	-	4.1e-11	43.2	0.0	7.7e-11	42.3	0.0	1.5	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288317|ref|YP_008874489.1|	-	4e-09	37.1	0.0	1.7e-08	35.1	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288317|ref|YP_008874489.1|	-	2.8e-07	30.8	0.0	5.3e-07	29.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Sulfatase	PF00884.23	gi|564288272|ref|YP_008874490.1|	-	1.5e-15	57.4	0.2	1.1e-13	51.2	0.1	2.3	2	0	0	2	2	2	2	Sulfatase
Phosphodiest	PF01663.22	gi|564288272|ref|YP_008874490.1|	-	0.0018	17.9	0.3	0.046	13.3	0.0	2.1	1	1	1	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|564288272|ref|YP_008874490.1|	-	0.003	16.2	0.0	0.0036	16.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
Glycos_transf_2	PF00535.26	gi|564288273|ref|YP_008874491.1|	-	4.5e-27	94.9	0.1	7.2e-27	94.3	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288273|ref|YP_008874491.1|	-	2.6e-17	63.5	0.0	3.2e-17	63.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.9	gi|564288273|ref|YP_008874491.1|	-	5.9e-11	42.4	0.0	8.5e-11	41.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Rhamno_transf	PF11316.8	gi|564288273|ref|YP_008874491.1|	-	0.051	13.0	0.0	0.092	12.1	0.0	1.3	1	0	0	1	1	1	0	Putative	rhamnosyl	transferase
Atu4866	PF11512.8	gi|564288273|ref|YP_008874491.1|	-	0.56	10.6	2.9	20	5.6	0.3	2.6	1	1	1	2	2	2	0	Agrobacterium	tumefaciens	protein	Atu4866
PMT_2	PF13231.6	gi|564288274|ref|YP_008874492.1|	-	0.0012	19.1	8.2	0.0012	19.1	8.2	3.2	3	1	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PTPS_related	PF10131.9	gi|564288274|ref|YP_008874492.1|	-	0.048	12.0	20.4	0.34	9.2	20.4	2.0	1	1	0	1	1	1	0	6-pyruvoyl-tetrahydropterin	synthase	related	domain;	membrane	protein
TMEM220	PF15071.6	gi|564288274|ref|YP_008874492.1|	-	1.7	9.5	7.7	13	6.6	0.3	3.4	3	1	1	4	4	4	0	Transmembrane	family	220,	helix
DUF4956	PF16316.5	gi|564288274|ref|YP_008874492.1|	-	5.1	6.7	9.0	0.42	10.3	1.6	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4956)
Tmemb_14	PF03647.13	gi|564288274|ref|YP_008874492.1|	-	5.4	7.8	24.7	0.46	11.3	3.5	4.1	3	1	1	4	4	4	0	Transmembrane	proteins	14C
Glycos_transf_1	PF00534.20	gi|564288275|ref|YP_008874493.1|	-	1.4e-32	112.6	0.0	2.4e-32	111.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288275|ref|YP_008874493.1|	-	9.7e-31	107.0	0.0	7.4e-30	104.1	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288275|ref|YP_008874493.1|	-	1.8e-27	96.4	0.1	2.9e-27	95.7	0.1	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288275|ref|YP_008874493.1|	-	4.6e-21	75.9	0.0	8.8e-21	75.0	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288275|ref|YP_008874493.1|	-	3.1e-09	37.1	0.0	5.8e-09	36.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564288275|ref|YP_008874493.1|	-	5.9e-05	23.1	0.0	9.9e-05	22.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
Glyco_transf_5	PF08323.11	gi|564288275|ref|YP_008874493.1|	-	0.0053	16.5	0.2	0.017	14.8	0.2	1.8	1	1	0	1	1	1	1	Starch	synthase	catalytic	domain
Asn_synthase	PF00733.21	gi|564288276|ref|YP_008874494.1|	-	1.1e-92	311.5	0.6	1.4e-92	311.2	0.6	1.1	1	0	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.6	gi|564288276|ref|YP_008874494.1|	-	8.2e-46	154.9	0.0	1.4e-45	154.1	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|564288276|ref|YP_008874494.1|	-	2.4e-42	144.3	0.0	4.7e-42	143.4	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
QueC	PF06508.13	gi|564288276|ref|YP_008874494.1|	-	0.021	14.3	0.0	0.043	13.3	0.0	1.4	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
DUF3700	PF12481.8	gi|564288276|ref|YP_008874494.1|	-	0.023	14.2	0.0	0.046	13.2	0.0	1.5	1	0	0	1	1	1	0	Aluminium	induced	protein
NAD_synthase	PF02540.17	gi|564288276|ref|YP_008874494.1|	-	0.18	10.9	0.0	0.33	10.0	0.0	1.4	1	0	0	1	1	1	0	NAD	synthase
Glycos_transf_1	PF00534.20	gi|564288277|ref|YP_008874495.1|	-	4.2e-32	111.0	0.0	7.3e-32	110.3	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|564288277|ref|YP_008874495.1|	-	1.4e-28	99.9	0.0	6.2e-28	97.9	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|564288277|ref|YP_008874495.1|	-	1.6e-22	80.3	0.0	2.7e-22	79.6	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|564288277|ref|YP_008874495.1|	-	7.7e-18	65.4	0.2	3.8e-17	63.2	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|564288277|ref|YP_008874495.1|	-	8.7e-06	26.1	0.0	2.2e-05	24.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.6	gi|564288277|ref|YP_008874495.1|	-	0.0013	18.8	0.0	0.002	18.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like
NTP_transf_2	PF01909.23	gi|564288277|ref|YP_008874495.1|	-	0.1	12.9	0.0	0.24	11.7	0.0	1.6	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
DUF1616	PF07760.11	gi|564288318|ref|YP_008874496.1|	-	2.5e-72	243.7	3.8	2.9e-72	243.5	3.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
Bax1-I	PF01027.20	gi|564288318|ref|YP_008874496.1|	-	0.0071	16.2	3.6	0.0071	16.2	3.6	1.7	1	1	0	1	1	1	1	Inhibitor	of	apoptosis-promoting	Bax1
DUF1129	PF06570.11	gi|564288318|ref|YP_008874496.1|	-	0.022	14.3	0.7	0.037	13.5	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
TMEM132D_C	PF15706.5	gi|564288318|ref|YP_008874496.1|	-	0.21	11.4	1.4	9	6.2	0.3	3.3	3	1	1	4	4	4	0	Mature	oligodendrocyte	transmembrane	protein,	TMEM132D,	C-term
7TMR-DISM_7TM	PF07695.11	gi|564288318|ref|YP_008874496.1|	-	7.4	6.4	8.7	1.6	8.6	4.6	1.9	2	1	0	2	2	2	0	7TM	diverse	intracellular	signalling
Glycos_transf_2	PF00535.26	gi|564288278|ref|YP_008874497.1|	-	4.7e-18	65.6	0.2	3.8e-16	59.4	0.2	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564288278|ref|YP_008874497.1|	-	4.4e-05	23.5	0.1	0.053	13.4	0.0	2.1	1	1	1	2	2	2	2	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.6	gi|564288278|ref|YP_008874497.1|	-	0.0023	18.4	0.0	0.0078	16.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
CARDB	PF07705.11	gi|564288279|ref|YP_008874498.1|	-	1.2e-14	54.4	24.7	5e-05	23.5	0.3	4.5	4	0	0	4	4	4	4	CARDB
Fn3-like	PF14310.6	gi|564288279|ref|YP_008874498.1|	-	0.00022	21.3	3.4	1	9.6	0.0	4.7	5	1	0	5	5	5	2	Fibronectin	type	III-like	domain
Cupredoxin_1	PF13473.6	gi|564288279|ref|YP_008874498.1|	-	0.00047	20.2	1.1	1.9	8.6	0.0	4.8	3	3	1	5	5	5	1	Cupredoxin-like	domain
DUF4832	PF16116.5	gi|564288279|ref|YP_008874498.1|	-	0.00048	20.0	6.1	0.69	9.7	0.0	3.6	3	1	0	3	3	3	2	Domain	of	unknown	function	(DUF4832)
A2M	PF00207.22	gi|564288279|ref|YP_008874498.1|	-	0.0037	17.1	1.3	4	7.3	0.0	3.7	3	0	0	3	3	3	2	Alpha-2-macroglobulin	family
DUF1616	PF07760.11	gi|564288279|ref|YP_008874498.1|	-	0.007	15.8	0.2	0.007	15.8	0.2	4.2	3	1	3	6	6	6	1	Protein	of	unknown	function	(DUF1616)
DUF3872	PF12988.7	gi|564288279|ref|YP_008874498.1|	-	0.041	13.7	0.5	11	5.8	0.0	4.0	4	1	0	4	4	4	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3872)
N_BRCA1_IG	PF16158.5	gi|564288279|ref|YP_008874498.1|	-	0.13	13.0	2.5	0.77	10.5	0.1	3.4	4	1	1	5	5	5	0	Ig-like	domain	from	next	to	BRCA1	gene
Big_7	PF17957.1	gi|564288279|ref|YP_008874498.1|	-	1.2	9.9	36.9	0.3	11.9	4.2	5.0	5	0	0	5	5	5	0	Bacterial	Ig	domain
Dicty_REP	PF05086.12	gi|564288279|ref|YP_008874498.1|	-	2.5	6.0	4.4	4.4	5.2	4.4	1.3	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
Ig_GlcNase	PF18368.1	gi|564288279|ref|YP_008874498.1|	-	5.1	7.3	7.1	3.5	7.8	0.0	3.6	3	1	1	4	4	4	0	Exo-beta-D-glucosaminidase	Ig-fold	domain
HTH_45	PF14947.6	gi|564288280|ref|YP_008874499.1|	-	3.4e-06	27.0	0.0	4e-06	26.7	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|564288280|ref|YP_008874499.1|	-	0.00032	20.7	0.4	0.0004	20.4	0.4	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288280|ref|YP_008874499.1|	-	0.0012	18.7	0.0	0.0019	18.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Replic_Relax	PF13814.6	gi|564288280|ref|YP_008874499.1|	-	0.0065	16.5	0.0	0.0074	16.4	0.0	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_Crp_2	PF13545.6	gi|564288280|ref|YP_008874499.1|	-	0.011	15.6	0.1	0.014	15.3	0.1	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.6	gi|564288280|ref|YP_008874499.1|	-	0.014	15.8	0.2	0.02	15.4	0.2	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|564288280|ref|YP_008874499.1|	-	0.015	15.0	0.0	0.02	14.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TrmB	PF01978.19	gi|564288280|ref|YP_008874499.1|	-	0.017	15.0	0.0	0.045	13.6	0.0	1.7	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564288280|ref|YP_008874499.1|	-	0.024	14.5	0.5	0.032	14.1	0.5	1.2	1	0	0	1	1	1	0	MarR	family
HxlR	PF01638.17	gi|564288280|ref|YP_008874499.1|	-	0.045	13.6	0.1	0.062	13.2	0.1	1.2	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
PadR	PF03551.14	gi|564288280|ref|YP_008874499.1|	-	0.071	13.1	0.0	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|564288280|ref|YP_008874499.1|	-	0.13	12.4	0.0	0.17	12.1	0.0	1.2	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Trp_oprn_chp	PF09534.10	gi|564288281|ref|YP_008874500.1|	-	0.05	13.4	0.1	0.08	12.7	0.1	1.3	1	0	0	1	1	1	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
HTH_20	PF12840.7	gi|564288281|ref|YP_008874500.1|	-	0.065	13.3	0.0	0.17	12.0	0.0	1.7	1	1	1	2	2	2	0	Helix-turn-helix	domain
TMEM232	PF15877.5	gi|564288281|ref|YP_008874500.1|	-	0.087	11.8	0.0	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	Transmembrane	protein	family	232
DUF3040	PF11239.8	gi|564288281|ref|YP_008874500.1|	-	0.099	12.9	0.1	0.19	12.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
DUF2892	PF11127.8	gi|564288281|ref|YP_008874500.1|	-	3.6	7.7	7.7	6.3	6.9	7.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
Amidohydro_3	PF07969.11	gi|564288282|ref|YP_008874501.1|	-	4.4e-10	39.6	0.7	0.00014	21.5	0.0	2.5	3	0	0	3	3	3	2	Amidohydrolase	family
Amidohydro_1	PF01979.20	gi|564288282|ref|YP_008874501.1|	-	0.00012	21.5	0.6	0.0025	17.2	0.0	2.9	2	1	0	2	2	2	1	Amidohydrolase	family
GFO_IDH_MocA	PF01408.22	gi|564288283|ref|YP_008874503.1|	-	8.4e-21	75.0	0.0	1.8e-20	74.0	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|564288283|ref|YP_008874503.1|	-	0.012	15.6	0.0	0.024	14.7	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Hydrolase_6	PF13344.6	gi|564288284|ref|YP_008874504.1|	-	3.6e-23	81.6	0.0	2.8e-22	78.7	0.0	2.4	3	0	0	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
NUDIX	PF00293.28	gi|564288284|ref|YP_008874504.1|	-	4.1e-16	59.2	0.1	7e-16	58.5	0.1	1.4	1	0	0	1	1	1	1	NUDIX	domain
Hydrolase_like	PF13242.6	gi|564288284|ref|YP_008874504.1|	-	1.5e-14	53.8	0.2	3.4e-14	52.6	0.2	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.26	gi|564288284|ref|YP_008874504.1|	-	2.2e-10	41.2	0.9	9.8e-10	39.1	0.9	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.6	gi|564288284|ref|YP_008874504.1|	-	0.00044	20.4	0.0	0.0026	17.8	0.0	2.1	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Peripla_BP_2	PF01497.18	gi|564288285|ref|YP_008874506.1|	-	5.7e-10	39.2	0.0	1.1e-09	38.2	0.0	1.5	2	0	0	2	2	2	1	Periplasmic	binding	protein
TmoB	PF06234.12	gi|564288285|ref|YP_008874506.1|	-	0.15	12.1	0.0	0.35	11.0	0.0	1.5	1	0	0	1	1	1	0	Toluene-4-monooxygenase	system	protein	B	(TmoB)
MarR_2	PF12802.7	gi|564288286|ref|YP_008874507.1|	-	7.9e-08	32.1	0.1	2.1e-07	30.7	0.1	1.7	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.22	gi|564288286|ref|YP_008874507.1|	-	3.9e-07	29.9	0.0	7.4e-07	29.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.10	gi|564288286|ref|YP_008874507.1|	-	0.00012	21.8	0.0	0.00029	20.6	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.21	gi|564288286|ref|YP_008874507.1|	-	0.00042	19.9	0.0	0.00091	18.8	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.6	gi|564288286|ref|YP_008874507.1|	-	0.00046	19.7	0.0	0.00076	19.0	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.19	gi|564288286|ref|YP_008874507.1|	-	0.00053	19.8	0.1	0.00092	19.1	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.6	gi|564288286|ref|YP_008874507.1|	-	0.0016	18.4	0.4	0.0029	17.5	0.4	1.6	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
RepL	PF05732.11	gi|564288286|ref|YP_008874507.1|	-	0.0036	16.8	0.0	0.0061	16.0	0.0	1.3	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
HTH_11	PF08279.12	gi|564288286|ref|YP_008874507.1|	-	0.0079	16.1	0.1	0.014	15.3	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
TBPIP	PF07106.13	gi|564288286|ref|YP_008874507.1|	-	0.009	15.9	0.0	0.015	15.2	0.0	1.4	1	0	0	1	1	1	1	TBPIP/Hop2	winged	helix	domain
HTH_DeoR	PF08220.12	gi|564288286|ref|YP_008874507.1|	-	0.0098	15.6	0.1	0.018	14.7	0.1	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_29	PF13551.6	gi|564288286|ref|YP_008874507.1|	-	0.011	15.7	0.0	0.15	12.1	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_27	PF13463.6	gi|564288286|ref|YP_008874507.1|	-	0.012	16.1	0.0	0.028	14.9	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|564288286|ref|YP_008874507.1|	-	0.015	15.2	0.0	0.04	13.8	0.0	1.8	1	1	1	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.6	gi|564288286|ref|YP_008874507.1|	-	0.016	15.2	0.0	0.046	13.7	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
7TM-7TMR_HD	PF07698.11	gi|564288286|ref|YP_008874507.1|	-	0.021	14.6	0.6	0.03	14.1	0.6	1.3	1	0	0	1	1	1	0	7TM	receptor	with	intracellular	HD	hydrolase
HTH_20	PF12840.7	gi|564288286|ref|YP_008874507.1|	-	0.028	14.5	0.2	0.1	12.7	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Penicillinase_R	PF03965.16	gi|564288286|ref|YP_008874507.1|	-	0.083	13.2	0.0	0.18	12.1	0.0	1.6	1	0	0	1	1	1	0	Penicillinase	repressor
RNA_pol_Rpc34	PF05158.12	gi|564288286|ref|YP_008874507.1|	-	0.085	12.2	0.0	0.13	11.6	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
Trp_repressor	PF01371.19	gi|564288286|ref|YP_008874507.1|	-	0.09	12.9	0.1	0.24	11.5	0.1	1.7	2	0	0	2	2	2	0	Trp	repressor	protein
DUF4367	PF14285.6	gi|564288288|ref|YP_008874509.1|	-	0.0026	18.2	0.0	0.0088	16.5	0.0	1.8	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4367)
Pap_E4	PF02711.14	gi|564288288|ref|YP_008874509.1|	-	2	9.4	3.9	9.3	7.3	1.7	2.4	2	0	0	2	2	2	0	E4	protein
Oxidored_q6	PF01058.22	gi|564288289|ref|YP_008874510.1|	-	1e-21	77.1	0.2	1.5e-21	76.6	0.2	1.2	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
HTH_10	PF04967.12	gi|564288290|ref|YP_008874511.1|	-	5.5e-17	61.3	0.0	8.7e-17	60.7	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_1	PF00126.27	gi|564288290|ref|YP_008874511.1|	-	0.0028	17.6	0.0	0.0052	16.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR_2	PF12802.7	gi|564288290|ref|YP_008874511.1|	-	0.003	17.4	0.1	0.0072	16.2	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|564288290|ref|YP_008874511.1|	-	0.003	17.6	0.0	0.024	14.7	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.12	gi|564288290|ref|YP_008874511.1|	-	0.0041	16.8	0.0	0.014	15.1	0.0	1.8	2	0	0	2	2	2	1	Sigma-70,	region	4
GerE	PF00196.19	gi|564288290|ref|YP_008874511.1|	-	0.0056	16.2	0.0	0.02	14.5	0.0	1.8	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	luxR	family
HTH_38	PF13936.6	gi|564288290|ref|YP_008874511.1|	-	0.0058	16.4	0.0	0.021	14.6	0.0	1.9	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|564288290|ref|YP_008874511.1|	-	0.015	15.1	0.0	0.026	14.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|564288290|ref|YP_008874511.1|	-	0.024	14.4	0.0	0.049	13.4	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Fe_dep_repress	PF01325.19	gi|564288290|ref|YP_008874511.1|	-	0.055	13.7	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_30	PF13556.6	gi|564288290|ref|YP_008874511.1|	-	0.09	12.6	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023012.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023012.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023012.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023012.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:19:11 2019
# [ok]