#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
AAA_22	PF13401.6	gi|564287834|ref|YP_008874026.1|	-	1.2e-14	54.7	0.2	2.6e-14	53.7	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.6	gi|564287834|ref|YP_008874026.1|	-	1.6e-11	44.9	0.3	3.9e-11	43.6	0.1	1.8	2	1	0	2	2	2	1	AAA	ATPase	domain
TniB	PF05621.11	gi|564287834|ref|YP_008874026.1|	-	4.3e-08	32.8	0.0	7.1e-08	32.1	0.0	1.3	1	0	0	1	1	1	1	Bacterial	TniB	protein
AAA	PF00004.29	gi|564287834|ref|YP_008874026.1|	-	1.2e-06	29.0	0.2	5.5e-06	26.8	0.2	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF815	PF05673.13	gi|564287834|ref|YP_008874026.1|	-	1.8e-05	24.0	0.0	5.2e-05	22.5	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.26	gi|564287834|ref|YP_008874026.1|	-	2.1e-05	24.3	0.0	0.00023	20.9	0.0	2.1	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Sigma54_activ_2	PF14532.6	gi|564287834|ref|YP_008874026.1|	-	9.9e-05	22.5	0.0	0.0046	17.1	0.0	2.2	2	0	0	2	2	2	1	Sigma-54	interaction	domain
NACHT	PF05729.12	gi|564287834|ref|YP_008874026.1|	-	0.0013	18.7	0.0	0.0019	18.1	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_5	PF07728.14	gi|564287834|ref|YP_008874026.1|	-	0.0016	18.5	0.3	0.0075	16.3	0.3	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
KAP_NTPase	PF07693.14	gi|564287834|ref|YP_008874026.1|	-	0.002	17.4	0.1	0.021	14.1	0.0	1.8	1	1	1	2	2	2	1	KAP	family	P-loop	domain
AAA_2	PF07724.14	gi|564287834|ref|YP_008874026.1|	-	0.0037	17.4	0.6	0.0056	16.8	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
ATPase_2	PF01637.18	gi|564287834|ref|YP_008874026.1|	-	0.0038	17.2	0.0	0.0073	16.2	0.0	1.5	1	1	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
RNA_helicase	PF00910.22	gi|564287834|ref|YP_008874026.1|	-	0.0056	17.0	0.1	0.011	16.1	0.1	1.6	1	1	0	1	1	1	1	RNA	helicase
AAA_10	PF12846.7	gi|564287834|ref|YP_008874026.1|	-	0.02	13.9	0.0	0.048	12.6	0.0	1.7	1	0	0	1	1	1	0	AAA-like	domain
DEAD	PF00270.29	gi|564287834|ref|YP_008874026.1|	-	0.022	14.5	2.3	2.4	7.9	0.2	2.5	2	1	1	3	3	2	0	DEAD/DEAH	box	helicase
AAA_7	PF12775.7	gi|564287834|ref|YP_008874026.1|	-	0.022	14.3	0.1	0.04	13.4	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
AAA_32	PF13654.6	gi|564287834|ref|YP_008874026.1|	-	0.025	13.4	1.3	0.16	10.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.22	gi|564287834|ref|YP_008874026.1|	-	0.025	13.8	0.0	0.04	13.1	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
DUF87	PF01935.17	gi|564287834|ref|YP_008874026.1|	-	0.038	14.1	0.2	0.13	12.4	0.1	1.8	1	1	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_24	PF13479.6	gi|564287834|ref|YP_008874026.1|	-	0.063	13.0	0.0	0.1	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.21	gi|564287834|ref|YP_008874026.1|	-	0.074	12.4	0.0	0.17	11.3	0.0	1.6	1	1	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_assoc_2	PF16193.5	gi|564287834|ref|YP_008874026.1|	-	0.077	13.3	0.3	0.21	12.0	0.3	1.7	1	0	0	1	1	1	0	AAA	C-terminal	domain
IstB_IS21	PF01695.17	gi|564287834|ref|YP_008874026.1|	-	0.1	12.4	0.1	0.23	11.2	0.1	1.7	1	1	1	2	2	2	0	IstB-like	ATP	binding	protein
PIF1	PF05970.14	gi|564287834|ref|YP_008874026.1|	-	0.11	11.6	0.0	0.23	10.6	0.0	1.5	1	1	0	1	1	1	0	PIF1-like	helicase
Phage_integrase	PF00589.22	gi|564287836|ref|YP_008874028.1|	-	4.4e-15	55.9	0.0	3e-14	53.2	0.0	2.1	2	1	0	2	2	2	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|564287836|ref|YP_008874028.1|	-	7.5e-07	29.4	0.0	1.3e-06	28.6	0.0	1.3	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|564287836|ref|YP_008874028.1|	-	1.6e-05	25.1	0.3	5.2e-05	23.5	0.0	2.0	2	0	0	2	2	2	1	Phage	integrase,	N-terminal	SAM-like	domain
DUF3435	PF11917.8	gi|564287836|ref|YP_008874028.1|	-	0.058	12.3	0.0	0.22	10.4	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3435)
Phage_int_SAM_4	PF13495.6	gi|564287836|ref|YP_008874028.1|	-	0.075	13.5	0.0	0.18	12.3	0.0	1.6	1	0	0	1	1	1	0	Phage	integrase,	N-terminal	SAM-like	domain
Arg_decarbox_C	PF17944.1	gi|564287836|ref|YP_008874028.1|	-	0.086	13.4	0.0	0.32	11.6	0.0	2.0	2	0	0	2	2	2	0	Arginine	decarboxylase	C-terminal	helical	extension
DDE_Tnp_1	PF01609.21	gi|564287837|ref|YP_008874029.1|	-	4e-10	39.7	0.3	7.1e-10	38.9	0.3	1.4	1	0	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|564287837|ref|YP_008874029.1|	-	3.6e-06	26.9	0.0	2e-05	24.5	0.0	2.3	2	0	0	2	2	2	1	Transposase	domain	(DUF772)
DDE_5	PF13546.6	gi|564287837|ref|YP_008874029.1|	-	0.00029	20.3	0.3	0.00058	19.3	0.3	1.5	1	0	0	1	1	1	1	DDE	superfamily	endonuclease
Chordopox_A13L	PF05961.11	gi|564287930|ref|YP_008874030.1|	-	0.16	12.3	0.0	0.19	12.0	0.0	1.3	1	0	0	1	1	1	0	Chordopoxvirus	A13L	protein
FixQ	PF05545.11	gi|564287930|ref|YP_008874030.1|	-	3	7.9	5.5	23	5.1	5.5	2.0	1	1	0	1	1	1	0	Cbb3-type	cytochrome	oxidase	component	FixQ
Fic	PF02661.18	gi|564287838|ref|YP_008874031.1|	-	3e-25	88.9	0.0	1.7e-24	86.5	0.0	2.2	2	0	0	2	2	2	1	Fic/DOC	family
Fic_N	PF13784.6	gi|564287838|ref|YP_008874031.1|	-	1.8e-24	85.5	0.0	4.7e-24	84.2	0.0	1.7	1	0	0	1	1	1	1	Fic/DOC	family	N-terminal
HTH_Crp_2	PF13545.6	gi|564287838|ref|YP_008874031.1|	-	0.021	14.8	0.2	0.085	12.8	0.0	2.1	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_17	PF12728.7	gi|564287838|ref|YP_008874031.1|	-	0.044	14.0	0.0	0.1	12.8	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4172	PF13776.6	gi|564287838|ref|YP_008874031.1|	-	0.049	14.0	0.0	0.14	12.5	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4172)
FtsK_gamma	PF09397.10	gi|564287838|ref|YP_008874031.1|	-	0.067	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	Ftsk	gamma	domain
Usp	PF00582.26	gi|564287931|ref|YP_008874032.1|	-	4.9e-05	23.9	0.1	0.3	11.6	0.0	2.5	1	1	1	2	2	2	2	Universal	stress	protein	family
TrkA_N	PF02254.18	gi|564287839|ref|YP_008874033.1|	-	6.6e-25	87.6	1.1	1.1e-24	86.9	1.1	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.21	gi|564287839|ref|YP_008874033.1|	-	2.7e-08	33.5	1.4	5.6e-08	32.5	0.1	2.2	2	0	0	2	2	2	1	TrkA-C	domain
Pyr_redox	PF00070.27	gi|564287839|ref|YP_008874033.1|	-	1.3e-07	32.1	0.2	2.3e-07	31.2	0.2	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_10	PF13460.6	gi|564287839|ref|YP_008874033.1|	-	2e-07	31.1	0.5	3.3e-07	30.4	0.5	1.4	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_7	PF13241.6	gi|564287839|ref|YP_008874033.1|	-	8.4e-06	26.2	0.1	1.7e-05	25.2	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|564287839|ref|YP_008874033.1|	-	4.3e-05	22.9	0.0	6.8e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|564287839|ref|YP_008874033.1|	-	0.0002	20.7	0.1	0.00046	19.5	0.1	1.5	1	1	1	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.6	gi|564287839|ref|YP_008874033.1|	-	0.00033	20.8	0.2	0.0085	16.3	0.0	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|564287839|ref|YP_008874033.1|	-	0.00082	19.0	0.8	0.0011	18.6	0.8	1.4	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.14	gi|564287839|ref|YP_008874033.1|	-	0.001	18.7	0.2	0.0023	17.5	0.2	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NmrA	PF05368.13	gi|564287839|ref|YP_008874033.1|	-	0.0019	17.8	0.2	0.0032	17.1	0.2	1.3	1	0	0	1	1	1	1	NmrA-like	family
3HCDH_N	PF02737.18	gi|564287839|ref|YP_008874033.1|	-	0.0025	17.7	0.1	0.0043	16.9	0.1	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Sacchrp_dh_NADP	PF03435.18	gi|564287839|ref|YP_008874033.1|	-	0.0045	17.2	0.4	0.009	16.3	0.4	1.5	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
Thi4	PF01946.17	gi|564287839|ref|YP_008874033.1|	-	0.0068	15.7	0.4	0.073	12.3	0.1	2.1	2	0	0	2	2	2	1	Thi4	family
Epimerase	PF01370.21	gi|564287839|ref|YP_008874033.1|	-	0.0097	15.4	0.2	0.016	14.7	0.2	1.3	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
HI0933_like	PF03486.14	gi|564287839|ref|YP_008874033.1|	-	0.017	13.9	0.1	0.024	13.4	0.1	1.2	1	0	0	1	1	1	0	HI0933-like	protein
adh_short_C2	PF13561.6	gi|564287839|ref|YP_008874033.1|	-	0.021	14.4	0.9	0.044	13.3	0.1	1.8	2	1	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
Trp_halogenase	PF04820.14	gi|564287839|ref|YP_008874033.1|	-	0.032	13.1	0.1	0.04	12.8	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_Gly3P_dh_N	PF01210.23	gi|564287839|ref|YP_008874033.1|	-	0.043	13.8	0.0	0.073	13.0	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
LpxI_N	PF17930.1	gi|564287839|ref|YP_008874033.1|	-	0.045	13.7	0.0	0.1	12.5	0.0	1.6	1	0	0	1	1	1	0	LpxI	N-terminal	domain
XdhC_C	PF13478.6	gi|564287839|ref|YP_008874033.1|	-	0.052	14.1	0.2	0.18	12.3	0.1	1.8	2	0	0	2	2	2	0	XdhC	Rossmann	domain
ApbA	PF02558.16	gi|564287839|ref|YP_008874033.1|	-	0.058	13.0	0.1	0.12	12.1	0.1	1.5	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Glyco_trans_4_4	PF13579.6	gi|564287839|ref|YP_008874033.1|	-	0.06	13.8	0.7	1	9.8	0.7	2.4	1	1	0	1	1	1	0	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.6	gi|564287839|ref|YP_008874033.1|	-	0.12	12.4	0.1	0.34	10.9	0.1	1.9	1	1	1	2	2	2	0	Glycosyltransferase	Family	4
AA_permease_2	PF13520.6	gi|564287840|ref|YP_008874034.1|	-	5.2e-53	180.4	42.1	6.5e-53	180.1	42.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564287840|ref|YP_008874034.1|	-	2.1e-43	148.7	39.3	2.8e-43	148.2	39.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|564287840|ref|YP_008874034.1|	-	6.1e-06	25.3	14.2	6.1e-06	25.3	14.2	2.5	2	1	0	2	2	2	1	Spore	germination	protein
Trp_Tyr_perm	PF03222.13	gi|564287840|ref|YP_008874034.1|	-	0.68	8.9	36.6	0.16	11.0	27.7	2.9	1	1	0	2	2	2	0	Tryptophan/tyrosine	permease	family
TrkA_N	PF02254.18	gi|564287841|ref|YP_008874035.1|	-	5.8e-32	110.4	8.7	2.4e-16	60.0	0.3	2.7	2	1	0	2	2	2	2	TrkA-N	domain
TrkA_C	PF02080.21	gi|564287841|ref|YP_008874035.1|	-	1.5e-19	69.5	0.2	3.3e-10	39.7	0.0	3.8	3	0	0	3	3	3	2	TrkA-C	domain
KH_1	PF00013.29	gi|564287841|ref|YP_008874035.1|	-	0.023	14.5	0.2	1.7	8.5	0.0	2.9	2	0	0	2	2	2	0	KH	domain
HTH_13	PF11972.8	gi|564287841|ref|YP_008874035.1|	-	0.045	13.8	0.2	0.17	11.9	0.0	2.1	2	0	0	2	2	2	0	HTH	DNA	binding	domain
IlvN	PF07991.12	gi|564287841|ref|YP_008874035.1|	-	0.049	13.2	0.6	4.5	6.8	0.2	2.3	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
DUF2529	PF10740.9	gi|564287841|ref|YP_008874035.1|	-	0.12	12.0	0.0	0.35	10.5	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2529)
Ion_trans_2	PF07885.16	gi|564287841|ref|YP_008874035.1|	-	2.2	8.3	7.5	4.4	7.3	7.5	1.5	1	0	0	1	1	1	0	Ion	channel
DisA_N	PF02457.16	gi|564287842|ref|YP_008874036.1|	-	2.3e-08	33.7	0.0	2.9e-08	33.3	0.0	1.2	1	0	0	1	1	1	1	DisA	bacterial	checkpoint	controller	nucleotide-binding
Na_H_Exchanger	PF00999.21	gi|564287843|ref|YP_008874037.1|	-	5.3e-18	65.0	21.7	6.8e-18	64.6	21.7	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
Tom6	PF17112.5	gi|564287843|ref|YP_008874037.1|	-	1.2	8.6	5.3	11	5.6	0.7	2.7	2	0	0	2	2	2	0	Mitochondrial	import	receptor	subunit	Tom6,	fungal
TrkA_C	PF02080.21	gi|564287932|ref|YP_008874038.1|	-	1.8e-13	50.1	1.1	3.1e-13	49.3	1.1	1.5	1	0	0	1	1	1	1	TrkA-C	domain
TrkA_N	PF02254.18	gi|564287932|ref|YP_008874038.1|	-	1.9e-08	34.6	3.9	9.9e-08	32.2	1.0	2.7	2	1	0	2	2	2	1	TrkA-N	domain
ADH_zinc_N	PF00107.26	gi|564287932|ref|YP_008874038.1|	-	0.053	13.5	0.1	0.15	12.0	0.0	1.8	1	1	1	2	2	2	0	Zinc-binding	dehydrogenase
Castor_Poll_mid	PF06241.12	gi|564287932|ref|YP_008874038.1|	-	0.083	12.9	0.0	0.13	12.2	0.0	1.3	1	0	0	1	1	1	0	Castor	and	Pollux,	part	of	voltage-gated	ion	channel
TrkH	PF02386.16	gi|564287844|ref|YP_008874039.1|	-	5.1e-60	203.4	14.4	7.5e-60	202.8	14.4	1.2	1	0	0	1	1	1	1	Cation	transport	protein
Form-deh_trans	PF09163.11	gi|564287844|ref|YP_008874039.1|	-	0.5	10.2	3.8	1.6	8.6	0.0	3.3	2	0	0	2	2	2	0	Formate	dehydrogenase	N,	transmembrane
Usp	PF00582.26	gi|564287845|ref|YP_008874041.1|	-	1.6e-09	38.4	0.4	2.2e-09	38.0	0.4	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
DUF1179	PF06678.11	gi|564287845|ref|YP_008874041.1|	-	0.013	15.4	0.3	0.037	14.0	0.0	1.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1179)
AA_permease_2	PF13520.6	gi|564287846|ref|YP_008874042.1|	-	5.7e-44	150.6	43.8	7.7e-44	150.2	43.8	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.21	gi|564287846|ref|YP_008874042.1|	-	2.8e-35	121.8	44.9	1.7e-34	119.2	44.9	1.9	1	1	0	1	1	1	1	Amino	acid	permease
Usp	PF00582.26	gi|564287846|ref|YP_008874042.1|	-	1.1e-18	68.1	4.5	4.7e-11	43.4	0.6	3.3	2	1	1	3	3	3	3	Universal	stress	protein	family
Trp_Tyr_perm	PF03222.13	gi|564287846|ref|YP_008874042.1|	-	7.5e-08	31.8	24.8	1.2e-07	31.1	24.8	1.2	1	0	0	1	1	1	1	Tryptophan/tyrosine	permease	family
Spore_permease	PF03845.13	gi|564287846|ref|YP_008874042.1|	-	0.0015	17.5	13.6	0.0015	17.5	13.6	1.6	2	0	0	2	2	2	1	Spore	germination	protein
PAP2	PF01569.21	gi|564287934|ref|YP_008874043.1|	-	0.014	15.2	2.1	0.015	15.1	2.1	1.1	1	0	0	1	1	1	0	PAP2	superfamily
DUF1129	PF06570.11	gi|564287934|ref|YP_008874043.1|	-	0.052	13.0	2.3	0.058	12.9	2.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1129)
DUF4191	PF13829.6	gi|564287934|ref|YP_008874043.1|	-	0.49	9.7	2.7	0.53	9.6	2.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
Herpes_LMP1	PF05297.11	gi|564287934|ref|YP_008874043.1|	-	0.59	9.3	3.1	0.67	9.1	3.1	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
DUF2207	PF09972.9	gi|564287934|ref|YP_008874043.1|	-	1.1	8.0	3.1	1	8.0	3.1	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
AAA_31	PF13614.6	gi|564287847|ref|YP_008874044.1|	-	9.2e-19	68.0	0.0	1.2e-18	67.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|564287847|ref|YP_008874044.1|	-	1.3e-12	47.8	0.0	1.8e-12	47.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.9	gi|564287847|ref|YP_008874044.1|	-	9.7e-06	25.2	0.1	4.1e-05	23.2	0.0	1.8	2	0	0	2	2	2	1	NUBPL	iron-transfer	P-loop	NTPase
MipZ	PF09140.11	gi|564287847|ref|YP_008874044.1|	-	0.00014	21.2	0.1	0.054	12.8	0.0	2.2	2	0	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|564287847|ref|YP_008874044.1|	-	0.00034	19.9	0.2	0.00055	19.2	0.2	1.6	1	1	0	1	1	1	1	Anion-transporting	ATPase
CBP_BcsQ	PF06564.12	gi|564287847|ref|YP_008874044.1|	-	0.0023	17.5	0.0	0.0047	16.4	0.0	1.5	1	1	0	1	1	1	1	Cellulose	biosynthesis	protein	BcsQ
Fer4_NifH	PF00142.18	gi|564287847|ref|YP_008874044.1|	-	0.061	12.7	0.0	0.2	11.1	0.0	1.7	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Ntox34	PF15606.6	gi|564287849|ref|YP_008874046.1|	-	0.1	12.7	0.1	0.15	12.2	0.1	1.3	1	0	0	1	1	1	0	Bacterial	toxin	34
Pentapeptide_3	PF13576.6	gi|564287851|ref|YP_008874048.1|	-	8.6e-44	147.5	103.9	1e-09	38.4	4.8	9.7	6	3	5	11	11	11	8	Pentapeptide	repeats	(9	copies)
Ion_trans_2	PF07885.16	gi|564287851|ref|YP_008874048.1|	-	1.7e-06	27.9	3.9	1.7e-06	27.9	3.9	2.3	1	1	1	2	2	2	1	Ion	channel
DUF3060	PF11259.8	gi|564287852|ref|YP_008874049.1|	-	0.059	13.1	8.7	0.56	9.9	1.2	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3060)
DUF2617	PF10936.8	gi|564287853|ref|YP_008874050.1|	-	6.7e-08	32.8	1.3	1.6e-06	28.3	1.3	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF2617
Spermine_synth	PF01564.17	gi|564287854|ref|YP_008874051.1|	-	1.2e-13	50.9	0.0	1.9e-13	50.2	0.0	1.3	1	0	0	1	1	1	1	Spermine/spermidine	synthase	domain
Methyltransf_30	PF05430.11	gi|564287854|ref|YP_008874051.1|	-	0.056	13.3	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
TAT_signal	PF10518.9	gi|564287855|ref|YP_008874052.1|	-	0.12	12.2	0.6	0.12	12.2	0.6	2.0	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
CPBP	PF02517.16	gi|564287856|ref|YP_008874053.1|	-	5.6e-14	52.3	5.8	5.6e-14	52.3	5.8	2.8	3	1	0	3	3	3	1	CPBP	intramembrane	metalloprotease
DUF2105	PF09878.9	gi|564287856|ref|YP_008874053.1|	-	0.15	11.8	8.5	0.16	11.6	1.2	2.6	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2105)
DUF4282	PF14110.6	gi|564287856|ref|YP_008874053.1|	-	9.4	7.0	16.1	30	5.4	0.6	3.6	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4282)
MASE3	PF17159.4	gi|564287857|ref|YP_008874054.1|	-	0.01	15.5	0.1	0.011	15.4	0.1	1.1	1	0	0	1	1	1	0	Membrane-associated	sensor	domain
DUF1772	PF08592.11	gi|564287857|ref|YP_008874054.1|	-	0.02	15.2	0.8	0.02	15.2	0.8	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
MerC	PF03203.14	gi|564287857|ref|YP_008874054.1|	-	0.035	14.6	1.0	0.041	14.3	1.0	1.2	1	0	0	1	1	1	0	MerC	mercury	resistance	protein
LrgB	PF04172.16	gi|564287857|ref|YP_008874054.1|	-	0.039	13.5	4.5	0.026	14.1	3.1	1.4	2	0	0	2	2	2	0	LrgB-like	family
DUF5381	PF17353.2	gi|564287857|ref|YP_008874054.1|	-	0.044	13.5	1.3	0.053	13.3	1.0	1.2	1	1	0	1	1	1	0	Family	of	unknown	function	(DUF5381)
HTH_20	PF12840.7	gi|564287858|ref|YP_008874055.1|	-	1.6e-06	28.1	0.1	4.1e-06	26.8	0.2	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.19	gi|564287858|ref|YP_008874055.1|	-	2.3e-06	27.4	0.2	4.3e-06	26.5	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_AsnC-type	PF13404.6	gi|564287858|ref|YP_008874055.1|	-	6e-05	22.8	0.2	0.00015	21.5	0.2	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.12	gi|564287858|ref|YP_008874055.1|	-	0.00012	21.9	0.0	0.00038	20.3	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_5	PF01022.20	gi|564287858|ref|YP_008874055.1|	-	0.00014	21.7	0.0	0.00046	20.0	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.14	gi|564287858|ref|YP_008874055.1|	-	0.00031	20.7	0.3	0.00067	19.6	0.2	1.6	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_IclR	PF09339.10	gi|564287858|ref|YP_008874055.1|	-	0.0058	16.4	0.0	0.013	15.3	0.0	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.6	gi|564287858|ref|YP_008874055.1|	-	0.0062	15.9	0.0	0.014	14.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_Crp_2	PF13545.6	gi|564287858|ref|YP_008874055.1|	-	0.012	15.6	0.0	0.047	13.7	0.0	2.0	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.6	gi|564287858|ref|YP_008874055.1|	-	0.012	15.1	0.0	0.022	14.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|564287858|ref|YP_008874055.1|	-	0.014	15.2	0.2	0.049	13.5	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_23	PF13384.6	gi|564287858|ref|YP_008874055.1|	-	0.042	13.7	0.0	0.091	12.6	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF2513	PF10711.9	gi|564287858|ref|YP_008874055.1|	-	0.15	12.4	0.0	0.24	11.7	0.0	1.3	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
Glyco_transf_21	PF13506.6	gi|564287859|ref|YP_008874056.1|	-	2.6e-12	46.5	0.0	4.3e-12	45.8	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.26	gi|564287859|ref|YP_008874056.1|	-	1.1e-06	28.5	0.3	3e-06	27.1	0.3	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|564287859|ref|YP_008874056.1|	-	0.058	13.3	0.0	0.07	13.0	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	like	family	2
DUF4781	PF16013.5	gi|564287859|ref|YP_008874056.1|	-	0.059	12.2	0.4	0.091	11.6	0.4	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4781)
DUF4229	PF14012.6	gi|564287859|ref|YP_008874056.1|	-	0.23	11.6	9.3	0.24	11.5	5.6	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4229)
E1-E2_ATPase	PF00122.20	gi|564287859|ref|YP_008874056.1|	-	0.41	10.1	2.2	0.65	9.5	2.2	1.2	1	0	0	1	1	1	0	E1-E2	ATPase
TackOD1	PF18551.1	gi|564287860|ref|YP_008874057.1|	-	0.017	14.8	0.0	0.21	11.2	0.0	1.9	2	0	0	2	2	2	0	Thaumarchaeal	output	domain	1
A2L_zn_ribbon	PF08792.10	gi|564287860|ref|YP_008874057.1|	-	0.023	14.4	1.0	1.3	8.9	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
UPF0547	PF10571.9	gi|564287860|ref|YP_008874057.1|	-	0.023	14.8	4.0	0.21	11.7	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Rubredoxin	PF00301.20	gi|564287860|ref|YP_008874057.1|	-	0.049	13.7	0.4	7	6.8	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin
Zn_Tnp_IS1595	PF12760.7	gi|564287860|ref|YP_008874057.1|	-	0.054	13.5	0.1	9.3	6.3	0.1	2.1	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.12	gi|564287860|ref|YP_008874057.1|	-	0.057	12.9	1.2	3	7.4	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf_UBZ	PF18439.1	gi|564287860|ref|YP_008874057.1|	-	0.063	12.9	0.7	1.5	8.5	0.0	2.1	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
IBR	PF01485.21	gi|564287860|ref|YP_008874057.1|	-	0.095	12.9	0.0	0.11	12.7	0.0	1.1	1	0	0	1	1	1	0	IBR	domain,	a	half	RING-finger	domain
Auto_anti-p27	PF06677.12	gi|564287860|ref|YP_008874057.1|	-	0.12	12.6	0.8	5.9	7.1	0.1	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF1610	PF07754.11	gi|564287860|ref|YP_008874057.1|	-	0.12	12.4	2.5	0.37	10.8	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Peripla_BP_2	PF01497.18	gi|564287862|ref|YP_008874059.1|	-	1.6e-08	34.4	0.4	4.1e-08	33.1	0.4	1.7	1	1	0	1	1	1	1	Periplasmic	binding	protein
PNPase	PF03726.14	gi|564287862|ref|YP_008874059.1|	-	0.034	14.6	0.3	0.16	12.5	0.1	2.1	1	1	1	2	2	2	0	Polyribonucleotide	nucleotidyltransferase,	RNA	binding	domain
HTH_18	PF12833.7	gi|564287935|ref|YP_008874060.1|	-	0.042	14.1	0.0	0.15	12.3	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HypA	PF01155.19	gi|564287863|ref|YP_008874061.1|	-	0.0012	18.9	5.3	0.45	10.6	0.3	2.3	2	0	0	2	2	2	2	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
DUF4596	PF15363.6	gi|564287863|ref|YP_008874061.1|	-	0.0091	16.2	0.4	0.028	14.6	0.4	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4596)
RNA_POL_M_15KD	PF02150.16	gi|564287863|ref|YP_008874061.1|	-	0.023	14.6	3.3	6.7	6.7	0.0	3.6	3	0	0	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
zinc_ribbon_15	PF17032.5	gi|564287863|ref|YP_008874061.1|	-	0.026	15.3	6.0	0.082	13.7	0.5	2.5	2	1	0	2	2	2	0	zinc-ribbon	family
DZR	PF12773.7	gi|564287863|ref|YP_008874061.1|	-	0.16	12.0	13.1	0.081	13.0	1.8	2.9	2	1	0	2	2	2	0	Double	zinc	ribbon
Baculo_LEF5_C	PF11792.8	gi|564287863|ref|YP_008874061.1|	-	0.52	10.0	0.0	0.52	10.0	0.0	2.8	3	0	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zinc-ribbons_6	PF07191.12	gi|564287863|ref|YP_008874061.1|	-	0.53	10.3	9.1	2.4	8.2	0.9	2.3	2	0	0	2	2	2	0	zinc-ribbons
zf-C3HC4_3	PF13920.6	gi|564287863|ref|YP_008874061.1|	-	0.82	9.6	8.0	0.24	11.3	2.0	2.4	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn_Tnp_IS1595	PF12760.7	gi|564287863|ref|YP_008874061.1|	-	0.95	9.5	12.5	3.8	7.6	2.5	3.6	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
RNHCP	PF12647.7	gi|564287863|ref|YP_008874061.1|	-	5.1	7.1	9.4	6.9	6.7	0.3	3.2	2	1	1	3	3	3	0	RNHCP	domain
2TM	PF13239.6	gi|564287936|ref|YP_008874062.1|	-	0.00045	20.5	0.4	0.00045	20.5	0.4	1.5	2	0	0	2	2	2	1	2TM	domain
AA_permease_2	PF13520.6	gi|564287936|ref|YP_008874062.1|	-	0.013	14.4	0.6	0.014	14.2	0.6	1.0	1	0	0	1	1	1	0	Amino	acid	permease
YtxH	PF12732.7	gi|564287864|ref|YP_008874063.1|	-	0.03	14.8	1.0	0.039	14.5	1.0	1.2	1	0	0	1	1	1	0	YtxH-like	protein
Soyouz_module	PF14313.6	gi|564287864|ref|YP_008874063.1|	-	0.28	11.0	2.0	0.32	10.8	0.7	1.8	2	0	0	2	2	2	0	N-terminal	region	of	Paramyxovirinae	phosphoprotein	(P)
Crystall_2	PF09076.10	gi|564287866|ref|YP_008874065.1|	-	0.044	13.7	0.0	0.073	13.0	0.0	1.3	1	0	0	1	1	1	0	Beta/Gamma	crystallin
TOBE_2	PF08402.10	gi|564287866|ref|YP_008874065.1|	-	0.15	12.3	0.9	0.7	10.1	0.7	1.8	1	1	1	2	2	2	0	TOBE	domain
Tropomyosin	PF00261.20	gi|564287867|ref|YP_008874066.1|	-	0.002	17.5	4.9	0.0032	16.9	4.9	1.2	1	0	0	1	1	1	1	Tropomyosin
Herpes_UL25	PF01499.16	gi|564287867|ref|YP_008874066.1|	-	0.016	13.8	1.4	0.024	13.2	1.4	1.2	1	0	0	1	1	1	0	Herpesvirus	UL25	family
DASH_Spc19	PF08287.11	gi|564287867|ref|YP_008874066.1|	-	0.024	14.5	3.2	0.042	13.8	3.2	1.4	1	0	0	1	1	1	0	Spc19
DUF4407	PF14362.6	gi|564287867|ref|YP_008874066.1|	-	0.048	13.0	8.5	0.09	12.1	8.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
TetR_C_23	PF17931.1	gi|564287867|ref|YP_008874066.1|	-	0.081	13.0	0.2	0.18	11.9	0.2	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
Synaptobrevin	PF00957.21	gi|564287867|ref|YP_008874066.1|	-	0.2	11.4	1.2	0.45	10.3	1.2	1.6	1	0	0	1	1	1	0	Synaptobrevin
CorA	PF01544.18	gi|564287867|ref|YP_008874066.1|	-	0.51	9.6	2.9	0.54	9.5	2.0	1.4	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
BST2	PF16716.5	gi|564287867|ref|YP_008874066.1|	-	0.65	10.6	6.6	4.8	7.8	5.0	2.4	1	1	1	2	2	2	0	Bone	marrow	stromal	antigen	2
LPP	PF04728.13	gi|564287867|ref|YP_008874066.1|	-	0.78	10.2	4.7	0.59	10.6	0.1	2.9	1	1	2	3	3	3	0	Lipoprotein	leucine-zipper
ABC_tran_CTD	PF16326.5	gi|564287867|ref|YP_008874066.1|	-	2.5	8.4	7.5	22	5.4	4.7	3.1	2	1	0	2	2	2	0	ABC	transporter	C-terminal	domain
NERD	PF08378.11	gi|564287938|ref|YP_008874071.1|	-	6e-07	29.9	0.0	1e-06	29.2	0.0	1.4	1	0	0	1	1	1	1	Nuclease-related	domain
UvrD_C_2	PF13538.6	gi|564287938|ref|YP_008874071.1|	-	7.2e-07	28.9	0.2	1.8e-06	27.7	0.2	1.7	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
UvrD-helicase	PF00580.21	gi|564287938|ref|YP_008874071.1|	-	0.019	14.5	0.0	4.6	6.7	0.0	2.4	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.6	gi|564287938|ref|YP_008874071.1|	-	0.036	14.4	0.0	0.48	10.8	0.0	2.5	1	1	0	1	1	1	0	AAA	domain
DUF2075	PF09848.9	gi|564287938|ref|YP_008874071.1|	-	0.06	12.6	0.0	0.16	11.1	0.0	1.6	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
ResIII	PF04851.15	gi|564287938|ref|YP_008874071.1|	-	0.076	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
DDE_Tnp_IS1595	PF12762.7	gi|564287871|ref|YP_008874073.1|	-	2.1e-21	76.5	0.0	2.8e-21	76.1	0.0	1.2	1	0	0	1	1	1	1	ISXO2-like	transposase	domain
Zn_Tnp_IS1595	PF12760.7	gi|564287871|ref|YP_008874073.1|	-	9.6e-10	38.3	0.9	2e-09	37.2	0.9	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DUF2089	PF09862.9	gi|564287871|ref|YP_008874073.1|	-	1.1e-07	31.9	0.0	1.9e-07	31.1	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2089)
Zn_Tnp_IS1	PF03811.13	gi|564287871|ref|YP_008874073.1|	-	1.5e-05	24.6	4.0	3.9e-05	23.3	4.0	1.7	1	0	0	1	1	1	1	InsA	N-terminal	domain
Zn-ribbon_8	PF09723.10	gi|564287871|ref|YP_008874073.1|	-	0.0074	16.4	0.5	3.1	8.0	0.1	2.4	2	0	0	2	2	2	1	Zinc	ribbon	domain
TackOD1	PF18551.1	gi|564287871|ref|YP_008874073.1|	-	0.0085	15.8	0.3	0.014	15.1	0.3	1.2	1	0	0	1	1	1	1	Thaumarchaeal	output	domain	1
HTH_30	PF13556.6	gi|564287871|ref|YP_008874073.1|	-	0.038	13.8	0.1	0.1	12.4	0.1	1.6	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
ADK_lid	PF05191.14	gi|564287871|ref|YP_008874073.1|	-	0.041	13.9	0.1	0.041	13.9	0.1	2.1	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-C4_Topoisom	PF01396.19	gi|564287871|ref|YP_008874073.1|	-	0.047	13.5	1.3	0.096	12.5	1.3	1.5	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
Sigma70_r4_2	PF08281.12	gi|564287871|ref|YP_008874073.1|	-	0.052	13.2	0.0	0.82	9.4	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_23	PF13384.6	gi|564287871|ref|YP_008874073.1|	-	0.08	12.8	0.0	0.32	10.9	0.0	2.0	1	0	0	1	1	1	0	Homeodomain-like	domain
PSD5	PF07637.11	gi|564287871|ref|YP_008874073.1|	-	0.089	13.1	0.0	0.27	11.6	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1595)
zinc-ribbons_6	PF07191.12	gi|564287871|ref|YP_008874073.1|	-	0.11	12.5	0.3	0.21	11.6	0.3	1.4	1	0	0	1	1	1	0	zinc-ribbons
Lar_restr_allev	PF14354.6	gi|564287871|ref|YP_008874073.1|	-	0.13	12.7	0.1	0.27	11.7	0.1	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DZR	PF12773.7	gi|564287871|ref|YP_008874073.1|	-	0.13	12.3	0.2	0.26	11.3	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Zn_ribbon_recom	PF13408.6	gi|564287871|ref|YP_008874073.1|	-	0.16	12.5	2.4	0.45	11.1	2.4	1.8	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-Dof	PF02701.15	gi|564287871|ref|YP_008874073.1|	-	0.18	12.0	3.5	0.38	10.9	3.5	1.5	1	0	0	1	1	1	0	Dof	domain,	zinc	finger
zf-C2H2_4	PF13894.6	gi|564287871|ref|YP_008874073.1|	-	0.32	11.9	1.7	1.1	10.3	0.2	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-ISL3	PF14690.6	gi|564287871|ref|YP_008874073.1|	-	0.84	10.3	5.8	7.7	7.3	0.2	2.9	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C2HC_2	PF13913.6	gi|564287871|ref|YP_008874073.1|	-	4.2	7.4	8.0	0.23	11.4	1.4	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
HSP70	PF00012.20	gi|564287872|ref|YP_008874075.1|	-	1.5e-120	403.2	0.7	1.5e-115	386.7	0.7	3.0	1	1	0	1	1	1	1	Hsp70	protein
MreB_Mbl	PF06723.13	gi|564287872|ref|YP_008874075.1|	-	1.3e-13	50.5	0.0	4.9e-12	45.3	0.0	2.6	2	1	0	2	2	2	1	MreB/Mbl	protein
Bacteriocin_IIc	PF10439.9	gi|564287941|ref|YP_008874076.1|	-	0.28	11.3	0.3	0.28	11.3	0.3	2.1	3	0	0	3	3	3	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Sdh_cyt	PF01127.22	gi|564287941|ref|YP_008874076.1|	-	1.5	8.9	9.5	0.41	10.7	5.4	2.1	1	1	2	3	3	3	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Herpes_UL43	PF05072.13	gi|564287873|ref|YP_008874077.1|	-	0.16	11.0	0.1	0.19	10.8	0.1	1.0	1	0	0	1	1	1	0	Herpesvirus	UL43	protein
NTP_transf_2	PF01909.23	gi|564287878|ref|YP_008874084.1|	-	4.6e-11	42.9	0.0	7.5e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|564287878|ref|YP_008874084.1|	-	5.2e-08	32.9	0.0	8e-08	32.3	0.0	1.3	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
MarR_2	PF12802.7	gi|564287878|ref|YP_008874084.1|	-	0.00028	20.7	0.1	0.0018	18.1	0.1	2.1	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|564287878|ref|YP_008874084.1|	-	0.0022	17.5	0.0	0.016	14.8	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.10	gi|564287878|ref|YP_008874084.1|	-	0.045	13.6	0.0	0.083	12.7	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
REPA_OB_2	PF16900.5	gi|564287879|ref|YP_008874085.1|	-	0.002	18.0	0.0	0.0052	16.7	0.0	1.7	2	0	0	2	2	2	1	Replication	protein	A	OB	domain
tRNA_anti-codon	PF01336.25	gi|564287879|ref|YP_008874085.1|	-	0.0022	17.9	0.1	0.0044	17.0	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
Occludin_ELL	PF07303.13	gi|564287880|ref|YP_008874086.1|	-	0.067	13.9	1.3	1.7	9.4	0.6	2.6	1	1	1	2	2	2	0	Occludin	homology	domain
Retrotrans_gag	PF03732.17	gi|564287880|ref|YP_008874086.1|	-	0.13	12.5	1.2	0.52	10.6	0.2	2.3	1	1	1	2	2	2	0	Retrotransposon	gag	protein
ADK_lid	PF05191.14	gi|564287944|ref|YP_008874087.1|	-	0.0012	18.8	0.2	0.0018	18.2	0.2	1.4	1	1	0	1	1	1	1	Adenylate	kinase,	active	site	lid
Terminase_GpA	PF05876.12	gi|564287944|ref|YP_008874087.1|	-	0.0013	17.4	0.7	0.0014	17.3	0.7	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
DUF3039	PF11238.8	gi|564287944|ref|YP_008874087.1|	-	0.0022	17.7	0.4	0.37	10.6	0.0	2.1	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF3039)
zf-C2H2	PF00096.26	gi|564287944|ref|YP_008874087.1|	-	0.0072	16.7	2.4	0.54	10.8	0.2	2.2	2	0	0	2	2	2	2	Zinc	finger,	C2H2	type
zf_UBZ	PF18439.1	gi|564287944|ref|YP_008874087.1|	-	0.036	13.6	2.6	2.7	7.6	0.1	2.2	2	0	0	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
zinc_ribbon_4	PF13717.6	gi|564287944|ref|YP_008874087.1|	-	0.037	14.0	1.9	0.092	12.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.6	gi|564287944|ref|YP_008874087.1|	-	0.054	14.3	1.7	0.84	10.7	0.2	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-HYPF	PF07503.12	gi|564287944|ref|YP_008874087.1|	-	0.18	11.6	5.2	0.49	10.2	0.8	2.4	2	0	0	2	2	2	0	HypF	finger
zinc_ribbon_5	PF13719.6	gi|564287944|ref|YP_008874087.1|	-	0.28	10.9	2.4	0.73	9.7	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
TrwB_AAD_bind	PF10412.9	gi|564287882|ref|YP_008874089.1|	-	1.6e-31	109.6	0.0	2.2e-31	109.1	0.0	1.1	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
TraG-D_C	PF12696.7	gi|564287882|ref|YP_008874089.1|	-	2.2e-11	43.9	0.0	5e-11	42.7	0.0	1.6	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
AAA_22	PF13401.6	gi|564287882|ref|YP_008874089.1|	-	2.1e-06	28.1	0.0	0.0009	19.5	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
ABC_tran	PF00005.27	gi|564287882|ref|YP_008874089.1|	-	0.0012	19.3	0.0	0.0032	18.0	0.0	1.7	1	0	0	1	1	1	1	ABC	transporter
T4SS-DNA_transf	PF02534.14	gi|564287882|ref|YP_008874089.1|	-	0.0035	16.2	0.0	0.0057	15.5	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
DUF87	PF01935.17	gi|564287882|ref|YP_008874089.1|	-	0.019	15.0	0.0	0.043	13.9	0.0	1.5	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_10	PF12846.7	gi|564287882|ref|YP_008874089.1|	-	0.021	13.8	0.0	0.068	12.1	0.0	1.7	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|564287882|ref|YP_008874089.1|	-	0.029	14.8	0.2	0.48	10.8	0.2	2.5	1	1	0	1	1	1	0	AAA	ATPase	domain
ATPase	PF06745.13	gi|564287882|ref|YP_008874089.1|	-	0.052	12.9	0.0	0.17	11.2	0.0	1.7	2	0	0	2	2	2	0	KaiC
AAA_30	PF13604.6	gi|564287882|ref|YP_008874089.1|	-	0.078	12.7	0.0	0.24	11.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.6	gi|564287882|ref|YP_008874089.1|	-	0.092	13.2	0.0	0.68	10.4	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_7	PF12775.7	gi|564287882|ref|YP_008874089.1|	-	0.19	11.2	0.0	0.33	10.4	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	dynein	motor	region
Relaxase	PF03432.14	gi|564287883|ref|YP_008874090.1|	-	0.028	14.0	0.3	0.057	13.0	0.3	1.8	1	1	0	1	1	1	0	Relaxase/Mobilisation	nuclease	domain
EF-G-binding_N	PF07299.11	gi|564287884|ref|YP_008874091.1|	-	0.15	12.6	3.2	0.52	10.9	0.8	2.3	2	1	0	2	2	2	0	Elongation	factor	G-binding	protein,	N-terminal
ATP-grasp_6	PF18419.1	gi|564287885|ref|YP_008874092.1|	-	0.0038	16.8	0.1	0.012	15.2	0.1	1.9	1	1	0	1	1	1	1	ATP-grasp-like	domain
DUF1778	PF08681.11	gi|564287885|ref|YP_008874092.1|	-	0.042	13.8	0.4	0.12	12.4	0.1	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1778)
RRF	PF01765.19	gi|564287885|ref|YP_008874092.1|	-	0.39	10.7	3.6	0.17	11.8	0.9	1.7	2	0	0	2	2	2	0	Ribosome	recycling	factor
AAA_22	PF13401.6	gi|564287886|ref|YP_008874093.1|	-	0.00023	21.4	1.1	0.017	15.4	0.3	3.0	3	0	0	3	3	3	1	AAA	domain
CagE_TrbE_VirB	PF03135.14	gi|564287886|ref|YP_008874093.1|	-	0.008	16.3	0.0	0.018	15.1	0.0	1.5	1	0	0	1	1	1	1	CagE,	TrbE,	VirB	family,	component	of	type	IV	transporter	system
Zot	PF05707.12	gi|564287886|ref|YP_008874093.1|	-	0.0096	15.6	0.1	0.032	13.9	0.0	1.8	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_10	PF12846.7	gi|564287886|ref|YP_008874093.1|	-	0.024	13.6	0.0	5.6	5.8	0.0	2.3	2	0	0	2	2	2	0	AAA-like	domain
AAA_16	PF13191.6	gi|564287886|ref|YP_008874093.1|	-	0.045	14.1	0.3	1	9.7	0.1	2.7	2	0	0	2	2	2	0	AAA	ATPase	domain
MeaB	PF03308.16	gi|564287886|ref|YP_008874093.1|	-	0.075	12.0	0.0	0.15	11.0	0.0	1.4	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
GAT	PF03127.14	gi|564287886|ref|YP_008874093.1|	-	0.27	11.5	2.5	4.5	7.7	0.1	3.5	3	0	0	3	3	3	0	GAT	domain
MgtE_N	PF03448.17	gi|564287886|ref|YP_008874093.1|	-	0.56	10.8	3.9	2	9.1	0.8	3.4	4	0	0	4	4	4	0	MgtE	intracellular	N	domain
YqfD	PF06898.11	gi|564287889|ref|YP_008874096.1|	-	0.056	12.3	0.2	0.086	11.7	0.2	1.2	1	0	0	1	1	1	0	Putative	stage	IV	sporulation	protein	YqfD
FMN_dh	PF01070.18	gi|564287890|ref|YP_008874097.1|	-	0.21	10.6	0.5	0.22	10.5	0.5	1.1	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
AAA_16	PF13191.6	gi|564287892|ref|YP_008874099.1|	-	7.8e-13	49.2	0.7	6.3e-12	46.2	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.29	gi|564287892|ref|YP_008874099.1|	-	1.4e-12	48.2	0.0	3e-12	47.1	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cdc6_C	PF09079.11	gi|564287892|ref|YP_008874099.1|	-	2e-08	34.1	0.0	4.5e-08	33.0	0.0	1.7	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|564287892|ref|YP_008874099.1|	-	1.3e-07	32.0	0.0	2.7e-07	30.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|564287892|ref|YP_008874099.1|	-	2e-06	27.2	0.0	5e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
TniB	PF05621.11	gi|564287892|ref|YP_008874099.1|	-	4.4e-06	26.2	0.0	9e-06	25.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	TniB	protein
ATPase_2	PF01637.18	gi|564287892|ref|YP_008874099.1|	-	0.00012	22.1	0.0	0.0003	20.8	0.0	1.6	1	0	0	1	1	1	1	ATPase	domain	predominantly	from	Archaea
AAA_24	PF13479.6	gi|564287892|ref|YP_008874099.1|	-	0.00088	19.0	0.0	0.0085	15.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_23	PF13476.6	gi|564287892|ref|YP_008874099.1|	-	0.0023	18.4	0.0	0.087	13.3	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.12	gi|564287892|ref|YP_008874099.1|	-	0.003	17.5	0.0	0.0088	16.0	0.0	1.7	2	0	0	2	2	2	1	NACHT	domain
Sigma54_activat	PF00158.26	gi|564287892|ref|YP_008874099.1|	-	0.0031	17.2	0.0	0.0055	16.4	0.0	1.4	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_7	PF12775.7	gi|564287892|ref|YP_008874099.1|	-	0.007	15.9	0.0	0.028	13.9	0.0	2.0	2	0	0	2	2	2	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|564287892|ref|YP_008874099.1|	-	0.0095	16.3	0.0	0.025	14.9	0.0	1.8	1	0	0	1	1	1	1	RNA	helicase
AAA_29	PF13555.6	gi|564287892|ref|YP_008874099.1|	-	0.015	15.0	0.0	0.032	14.0	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
RsgA_GTPase	PF03193.16	gi|564287892|ref|YP_008874099.1|	-	0.033	14.1	0.0	0.14	12.0	0.0	1.9	2	0	0	2	2	2	0	RsgA	GTPase
ABC_tran	PF00005.27	gi|564287892|ref|YP_008874099.1|	-	0.035	14.6	0.2	0.092	13.3	0.2	2.0	1	1	0	1	1	1	0	ABC	transporter
IstB_IS21	PF01695.17	gi|564287892|ref|YP_008874099.1|	-	0.044	13.5	0.1	0.25	11.0	0.0	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_25	PF13481.6	gi|564287892|ref|YP_008874099.1|	-	0.046	13.3	0.0	0.23	11.0	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.6	gi|564287892|ref|YP_008874099.1|	-	0.05	13.9	0.0	0.096	13.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.11	gi|564287892|ref|YP_008874099.1|	-	0.069	12.0	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
AAA_5	PF07728.14	gi|564287892|ref|YP_008874099.1|	-	0.089	12.8	0.1	0.45	10.5	0.1	2.2	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.21	gi|564287892|ref|YP_008874099.1|	-	0.09	12.2	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.23	gi|564287892|ref|YP_008874099.1|	-	0.12	12.4	0.0	0.5	10.5	0.0	2.0	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
Polbeta	PF18765.1	gi|564287893|ref|YP_008874102.1|	-	6.2e-10	39.0	0.2	3.7e-09	36.6	0.1	2.0	2	0	0	2	2	2	1	Polymerase	beta,	Nucleotidyltransferase
NTP_transf_2	PF01909.23	gi|564287893|ref|YP_008874102.1|	-	1.5e-08	34.8	0.6	4.8e-08	33.2	0.2	2.0	2	0	0	2	2	2	1	Nucleotidyltransferase	domain
MarR_2	PF12802.7	gi|564287893|ref|YP_008874102.1|	-	1.1e-06	28.4	0.0	2.3e-06	27.4	0.0	1.5	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.21	gi|564287893|ref|YP_008874102.1|	-	0.0015	18.2	0.0	0.0038	16.9	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.12	gi|564287893|ref|YP_008874102.1|	-	0.0015	18.5	0.1	0.0043	17.0	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
DNA_pol_B_palm	PF14792.6	gi|564287893|ref|YP_008874102.1|	-	0.0044	17.2	0.1	0.0092	16.2	0.1	1.5	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
Adenyl_cycl_N	PF12633.7	gi|564287893|ref|YP_008874102.1|	-	0.01	15.7	0.0	0.017	15.0	0.0	1.3	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
HTH_24	PF13412.6	gi|564287893|ref|YP_008874102.1|	-	0.084	12.4	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF1030	PF06270.11	gi|564287894|ref|YP_008874103.1|	-	0.11	12.3	0.1	0.27	11.0	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1030)
Phage_int_SAM_5	PF13102.6	gi|564287895|ref|YP_008874104.1|	-	7.4e-05	23.0	0.0	0.00017	21.9	0.0	1.6	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|564287895|ref|YP_008874104.1|	-	0.024	15.0	0.3	0.71	10.2	0.0	2.9	3	0	0	3	3	3	0	Phage	integrase,	N-terminal	SAM-like	domain
Cas_Cas6	PF01881.16	gi|564287896|ref|YP_008874105.1|	-	2.6e-18	67.0	0.0	3.3e-18	66.6	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas6
Cas_TM1802	PF09484.10	gi|564287897|ref|YP_008874106.1|	-	2.6e-19	69.4	0.0	8.1e-09	34.8	0.0	2.3	2	1	0	2	2	2	2	CRISPR-associated	protein	TM1802	(cas_TM1802)
Cas_Cas7	PF05107.12	gi|564287898|ref|YP_008874107.1|	-	1.3e-46	159.2	0.0	1.5e-46	159.0	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	protein	Cas7
Cas_Cas5d	PF09704.10	gi|564287899|ref|YP_008874108.1|	-	8.7e-10	38.8	0.0	1.2e-09	38.3	0.0	1.3	1	1	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
HD_6	PF18019.1	gi|564287900|ref|YP_008874109.1|	-	6.3e-09	36.2	0.1	2.9e-08	34.1	0.1	2.1	2	0	0	2	2	2	1	HD	domain
ResIII	PF04851.15	gi|564287900|ref|YP_008874109.1|	-	1.3e-07	31.8	0.0	2.7e-07	30.7	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.29	gi|564287900|ref|YP_008874109.1|	-	4.7e-06	26.5	0.0	1.4e-05	24.9	0.0	1.8	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Rep_fac-A_C	PF08646.10	gi|564287900|ref|YP_008874109.1|	-	0.011	15.4	0.0	0.023	14.4	0.0	1.5	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
Cas_Cas4	PF01930.17	gi|564287901|ref|YP_008874110.1|	-	3.5e-46	157.3	0.0	4e-46	157.1	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.7	gi|564287901|ref|YP_008874110.1|	-	0.0043	17.0	0.0	0.0049	16.8	0.0	1.3	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas1	PF01867.16	gi|564287902|ref|YP_008874111.1|	-	1.6e-86	290.0	0.0	1.9e-86	289.8	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
CRISPR_Cas2	PF09827.9	gi|564287903|ref|YP_008874112.1|	-	2.2e-14	53.4	0.0	2.6e-14	53.2	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Saw1	PF11561.8	gi|564287903|ref|YP_008874112.1|	-	0.096	12.2	0.2	0.26	10.8	0.1	1.6	1	1	1	2	2	2	0	Single	strand	annealing-weakened	1
PCNA_N	PF00705.18	gi|564287905|ref|YP_008874115.1|	-	0.0074	16.0	0.0	0.017	14.8	0.0	1.6	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
SprT-like	PF10263.9	gi|564287907|ref|YP_008874118.1|	-	0.17	11.8	0.2	0.62	9.9	0.1	1.8	2	0	0	2	2	2	0	SprT-like	family
Aminopep	PF10023.9	gi|564287907|ref|YP_008874118.1|	-	0.5	9.7	3.2	0.8	9.0	0.1	2.1	2	0	0	2	2	2	0	Putative	aminopeptidase
zf-ribbon_3	PF13248.6	gi|564287907|ref|YP_008874118.1|	-	0.59	9.6	2.4	0.64	9.5	0.7	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
HNH_5	PF14279.6	gi|564287949|ref|YP_008874120.1|	-	0.00017	21.4	0.1	0.00038	20.3	0.1	1.6	1	0	0	1	1	1	1	HNH	endonuclease
HNH	PF01844.23	gi|564287949|ref|YP_008874120.1|	-	0.054	13.7	0.1	0.093	12.9	0.1	1.3	1	0	0	1	1	1	0	HNH	endonuclease
DZR	PF12773.7	gi|564287949|ref|YP_008874120.1|	-	0.074	13.1	0.2	0.13	12.3	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|564287949|ref|YP_008874120.1|	-	0.12	11.8	0.9	0.79	9.2	0.2	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
FAM76	PF16046.5	gi|564287949|ref|YP_008874120.1|	-	0.22	10.8	0.0	0.33	10.3	0.0	1.2	1	0	0	1	1	1	0	FAM76	protein
Mur_ligase_M	PF08245.12	gi|564287909|ref|YP_008874123.1|	-	1.2e-06	28.6	0.0	2.1e-06	27.9	0.0	1.3	1	0	0	1	1	1	1	Mur	ligase	middle	domain
HTH_IclR	PF09339.10	gi|564287909|ref|YP_008874123.1|	-	0.13	12.1	0.2	0.72	9.7	0.1	2.4	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Caps_synth_CapC	PF14102.6	gi|564287910|ref|YP_008874124.1|	-	9.7e-27	93.8	42.6	4.4e-19	69.1	12.8	3.2	2	2	2	4	4	4	2	Capsule	biosynthesis	CapC
TMEM141	PF15110.6	gi|564287910|ref|YP_008874124.1|	-	1.4	9.6	4.7	3.4	8.3	0.6	2.9	2	1	1	3	3	3	0	TMEM141	protein	family
DUF2065	PF09838.9	gi|564287918|ref|YP_008874136.1|	-	0.015	15.3	0.0	5.8	7.0	0.1	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2065)
DUF2530	PF10745.9	gi|564287919|ref|YP_008874137.1|	-	0.017	15.3	1.1	7.1	6.9	0.1	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2530)
SLATT_6	PF18169.1	gi|564287919|ref|YP_008874137.1|	-	0.02	14.5	0.7	0.054	13.1	0.1	1.8	1	1	1	2	2	2	0	SMODS	and	SLOG-associating	2TM	effector	domain	6
SLAC1	PF03595.17	gi|564287919|ref|YP_008874137.1|	-	0.027	13.7	4.9	0.035	13.4	4.9	1.1	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
DHHC	PF01529.20	gi|564287919|ref|YP_008874137.1|	-	0.15	12.2	1.4	0.2	11.7	1.4	1.2	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
FixP_N	PF14715.6	gi|564287919|ref|YP_008874137.1|	-	1.8	8.3	7.9	0.098	12.4	1.5	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
Wzy_C_2	PF11846.8	gi|564287920|ref|YP_008874138.1|	-	0.022	14.7	1.0	0.038	13.9	1.0	1.3	1	0	0	1	1	1	0	Virulence	factor	membrane-bound	polymerase,	C-terminal
Methyltransf_13	PF08421.11	gi|564287921|ref|YP_008874139.1|	-	0.00096	19.4	0.1	0.0011	19.1	0.1	1.2	1	0	0	1	1	1	1	Putative	zinc	binding	domain
DUF1610	PF07754.11	gi|564287921|ref|YP_008874139.1|	-	0.062	13.3	0.9	0.12	12.4	0.9	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1610)
SWIM	PF04434.17	gi|564287922|ref|YP_008874140.1|	-	0.021	14.5	0.1	0.021	14.5	0.1	2.4	2	1	0	2	2	2	0	SWIM	zinc	finger
TFIIB	PF00382.19	gi|564287923|ref|YP_008874141.1|	-	9.2e-20	70.5	2.2	6e-10	39.0	1.2	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.12	gi|564287923|ref|YP_008874141.1|	-	1.1e-08	34.4	2.8	1.1e-08	34.4	2.8	1.9	2	0	0	2	2	2	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.11	gi|564287923|ref|YP_008874141.1|	-	0.0017	18.2	0.6	0.0017	18.2	0.6	1.7	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.6	gi|564287923|ref|YP_008874141.1|	-	0.044	13.2	2.5	0.14	11.6	2.5	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
HTH_23	PF13384.6	gi|564287923|ref|YP_008874141.1|	-	0.052	13.3	0.2	3.2	7.6	0.0	3.2	3	0	0	3	3	3	0	Homeodomain-like	domain
DZR	PF12773.7	gi|564287923|ref|YP_008874141.1|	-	0.053	13.6	0.7	0.12	12.5	0.7	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
XRCC4	PF06632.12	gi|564287923|ref|YP_008874141.1|	-	0.077	11.8	1.3	0.097	11.5	1.3	1.1	1	0	0	1	1	1	0	DNA	double-strand	break	repair	and	V(D)J	recombination	protein	XRCC4
zinc-ribbons_6	PF07191.12	gi|564287923|ref|YP_008874141.1|	-	0.14	12.1	1.3	0.23	11.4	0.4	1.8	2	0	0	2	2	2	0	zinc-ribbons
Zn-ribbon_8	PF09723.10	gi|564287923|ref|YP_008874141.1|	-	3.4	7.9	4.6	8.1	6.7	0.5	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
Zn-ribbon_8	PF09723.10	gi|564287926|ref|YP_008874145.1|	-	0.017	15.2	1.3	0.72	10.0	0.2	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-ribbon_3	PF13248.6	gi|564287926|ref|YP_008874145.1|	-	0.06	12.8	2.2	0.11	11.9	0.3	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_9	PF14369.6	gi|564287926|ref|YP_008874145.1|	-	0.16	12.3	4.5	0.57	10.5	0.9	2.1	1	1	1	2	2	2	0	zinc-ribbon
DUF35_N	PF12172.8	gi|564287926|ref|YP_008874145.1|	-	0.16	11.9	5.0	4.3	7.3	0.4	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Trm112p	PF03966.16	gi|564287926|ref|YP_008874145.1|	-	0.3	11.7	1.9	2.9	8.5	0.1	2.1	1	1	1	2	2	2	0	Trm112p-like	protein
zf-C2H2_4	PF13894.6	gi|564287926|ref|YP_008874145.1|	-	0.78	10.8	3.8	13	6.9	0.5	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_4	PF13717.6	gi|564287926|ref|YP_008874145.1|	-	0.78	9.7	4.4	3.7	7.6	4.4	1.9	1	1	0	1	1	1	0	zinc-ribbon	domain
N6_Mtase	PF02384.16	gi|564287927|ref|YP_008874146.1|	-	4.3e-13	49.2	0.0	6.2e-13	48.7	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
AviRa	PF11599.8	gi|564287927|ref|YP_008874146.1|	-	0.091	12.2	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	RRNA	methyltransferase	AviRa
Methyltransf_31	PF13847.6	gi|564287927|ref|YP_008874146.1|	-	0.12	12.2	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|564287927|ref|YP_008874146.1|	-	0.13	13.0	0.1	0.35	11.6	0.0	1.8	2	0	0	2	2	2	0	Methyltransferase	domain
DUF664	PF04978.12	gi|564287928|ref|YP_008874147.1|	-	0.1	13.0	0.1	0.12	12.8	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF664)
PadR	PF03551.14	gi|564287929|ref|YP_008874148.1|	-	1.7e-17	63.1	0.3	2e-17	62.9	0.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
DUF1495	PF07381.11	gi|564287929|ref|YP_008874148.1|	-	0.00028	20.7	0.0	0.00039	20.2	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.6	gi|564287929|ref|YP_008874148.1|	-	0.011	15.7	0.0	0.015	15.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|564287929|ref|YP_008874148.1|	-	0.017	15.6	0.0	0.022	15.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4364	PF14277.6	gi|564287929|ref|YP_008874148.1|	-	0.04	13.7	0.0	0.06	13.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
TrmB	PF01978.19	gi|564287929|ref|YP_008874148.1|	-	0.05	13.5	0.1	0.077	12.9	0.1	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.7	gi|564287929|ref|YP_008874148.1|	-	0.14	12.1	0.3	0.6	10.0	0.1	2.2	2	1	0	2	2	2	0	MarR	family
HTH_34	PF13601.6	gi|564287929|ref|YP_008874148.1|	-	0.16	12.2	0.0	0.2	11.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023011.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023011.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023011.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Haloarcula_hispanica_N601_uid230920/NC_023011.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:17:09 2019
# [ok]