# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- DDE_Tnp_1 PF01609.21 gi|299883391|ref|YP_003738944.1| - 1.3e-06 28.2 0.9 1.1e-05 25.1 0.9 2.1 1 1 0 1 1 1 1 Transposase DDE domain DUF772 PF05598.11 gi|299883391|ref|YP_003738944.1| - 1.8e-06 27.9 0.0 4.6e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Transposase domain (DUF772) DDE_Tnp_1_4 PF13701.6 gi|299883391|ref|YP_003738944.1| - 0.00086 17.7 0.3 0.04 12.2 0.0 2.2 2 0 0 2 2 2 2 Transposase DDE domain group 1 Resolvase PF00239.21 gi|299883392|ref|YP_003738945.1| - 4.7e-35 120.8 1.4 6.5e-35 120.4 1.4 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_24 PF13412.6 gi|299883393|ref|YP_003738946.1| - 6.9e-15 54.3 0.1 1.3e-14 53.4 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|299883393|ref|YP_003738946.1| - 3.2e-13 49.3 1.6 4.7e-13 48.7 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|299883393|ref|YP_003738946.1| - 2e-05 24.4 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|299883393|ref|YP_003738946.1| - 6e-05 22.7 0.0 0.00012 21.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.7 gi|299883393|ref|YP_003738946.1| - 6.5e-05 22.9 0.0 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|299883393|ref|YP_003738946.1| - 0.00012 22.2 0.0 0.0002 21.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|299883393|ref|YP_003738946.1| - 0.00018 21.3 0.0 0.00034 20.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|299883393|ref|YP_003738946.1| - 0.0012 18.6 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|299883393|ref|YP_003738946.1| - 0.0015 18.4 0.0 0.003 17.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|299883393|ref|YP_003738946.1| - 0.0021 17.9 0.0 0.0048 16.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|299883393|ref|YP_003738946.1| - 0.011 15.5 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|299883393|ref|YP_003738946.1| - 0.015 15.2 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Tfb5 PF06331.12 gi|299883393|ref|YP_003738946.1| - 0.016 15.2 0.1 0.077 13.0 0.0 2.1 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 HTH_29 PF13551.6 gi|299883393|ref|YP_003738946.1| - 0.021 14.9 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix zf-C3HC4_3 PF13920.6 gi|299883393|ref|YP_003738946.1| - 0.025 14.4 1.6 0.054 13.4 1.6 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-FCS PF06467.14 gi|299883393|ref|YP_003738946.1| - 0.047 13.6 3.9 0.078 12.9 3.9 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Fe_dep_repress PF01325.19 gi|299883393|ref|YP_003738946.1| - 0.047 13.9 0.0 0.096 12.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|299883393|ref|YP_003738946.1| - 0.054 14.0 0.2 0.26 11.8 0.1 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|299883393|ref|YP_003738946.1| - 0.056 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Arc_trans_TRASH PF08394.10 gi|299883393|ref|YP_003738946.1| - 0.062 13.6 3.7 0.1 12.9 3.7 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain LexA_DNA_bind PF01726.16 gi|299883393|ref|YP_003738946.1| - 0.071 12.9 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HHH_6 PF14579.6 gi|299883393|ref|YP_003738946.1| - 0.1 12.8 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix motif TLP1_add_C PF18313.1 gi|299883393|ref|YP_003738946.1| - 0.11 12.5 0.1 0.41 10.6 0.1 2.0 1 1 0 1 1 1 0 Thiolase-like protein type 1 additional C-terminal domain Sigma70_r4_2 PF08281.12 gi|299883393|ref|YP_003738946.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 ATPase-cat_bd PF12156.8 gi|299883393|ref|YP_003738946.1| - 0.25 12.1 4.0 0.53 11.1 4.0 1.6 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase ADD_ATRX PF17981.1 gi|299883393|ref|YP_003738946.1| - 6.9 6.6 7.4 9.2 6.2 0.2 2.4 1 1 1 2 2 2 0 Cysteine Rich ADD domain FeoC PF09012.10 gi|299883393|ref|YP_003738946.1| - 8.2 6.6 0.0 8.2 6.6 0.0 2.8 2 1 1 3 3 3 0 FeoC like transcriptional regulator DUF326 PF03860.16 gi|299883394|ref|YP_003738947.1| - 4.8e-05 23.2 25.5 0.0025 17.7 5.8 5.5 5 1 0 5 5 5 3 Domain of Unknown Function (DUF326) FUSC PF04632.12 gi|299883394|ref|YP_003738947.1| - 0.054 12.0 0.5 0.059 11.9 0.5 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Pentapeptide PF00805.22 gi|299883395|ref|YP_003738948.1| - 4.2e-19 67.8 23.8 2.8e-09 36.4 5.6 3.3 2 1 1 3 3 3 3 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|299883395|ref|YP_003738948.1| - 3.8e-11 43.0 0.8 1.6e-09 37.8 0.9 2.2 1 1 0 1 1 1 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|299883395|ref|YP_003738948.1| - 1.6e-09 37.8 8.6 0.0015 18.6 5.6 3.0 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|299883396|ref|YP_003738949.1| - 3.8e-17 61.6 0.3 2.1e-08 33.6 0.0 2.1 1 1 1 2 2 2 2 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.6 gi|299883396|ref|YP_003738949.1| - 0.00016 21.8 0.0 0.00017 21.6 0.0 1.1 1 0 0 1 1 1 1 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|299883396|ref|YP_003738949.1| - 0.00027 21.0 0.0 0.12 12.6 0.0 2.2 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.16 gi|299883397|ref|YP_003738950.1| - 1.4e-10 41.0 2.7 1.4e-10 41.0 2.7 2.0 2 0 0 2 2 2 1 Ion channel DUF63 PF01889.17 gi|299883398|ref|YP_003738951.1| - 2.7e-06 27.8 1.0 3.6e-06 27.4 1.0 1.2 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF2788 PF10981.8 gi|299883398|ref|YP_003738951.1| - 1.2 9.2 0.0 1.2 9.2 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2788) Methyltransf_31 PF13847.6 gi|299883399|ref|YP_003738952.1| - 2.2e-21 76.3 0.0 2.6e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|299883399|ref|YP_003738952.1| - 1.1e-20 74.1 0.1 1.8e-20 73.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|299883399|ref|YP_003738952.1| - 4.7e-20 72.0 0.1 8.5e-20 71.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|299883399|ref|YP_003738952.1| - 1.1e-18 67.5 0.0 1.3e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|299883399|ref|YP_003738952.1| - 5e-17 62.5 0.0 6.9e-17 62.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|299883399|ref|YP_003738952.1| - 1.4e-15 57.6 0.0 1.7e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|299883399|ref|YP_003738952.1| - 3.8e-15 56.2 0.0 5.3e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|299883399|ref|YP_003738952.1| - 4.7e-06 26.5 0.0 6.5e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MetW PF07021.12 gi|299883399|ref|YP_003738952.1| - 9.3e-05 22.1 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|299883399|ref|YP_003738952.1| - 0.0003 20.2 0.0 0.00038 19.8 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|299883399|ref|YP_003738952.1| - 0.0012 18.3 0.0 0.0022 17.5 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase TPMT PF05724.11 gi|299883399|ref|YP_003738952.1| - 0.0038 16.9 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MTS PF05175.14 gi|299883399|ref|YP_003738952.1| - 0.023 14.2 0.0 0.084 12.4 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|299883399|ref|YP_003738952.1| - 0.038 14.0 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|299883399|ref|YP_003738952.1| - 0.038 13.1 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin FtsJ PF01728.19 gi|299883399|ref|YP_003738952.1| - 0.046 13.8 0.0 0.15 12.1 0.0 1.6 1 1 0 2 2 2 0 FtsJ-like methyltransferase E1-E2_ATPase PF00122.20 gi|299883400|ref|YP_003738953.1| - 6.9e-51 172.3 2.2 6.9e-51 172.3 2.2 3.1 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|299883400|ref|YP_003738953.1| - 2.6e-37 129.2 6.0 4.2e-37 128.5 6.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|299883400|ref|YP_003738953.1| - 1.6e-05 24.8 0.4 0.0029 17.4 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|299883400|ref|YP_003738953.1| - 0.00065 19.8 0.1 0.009 16.1 0.1 2.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|299883400|ref|YP_003738953.1| - 0.0078 16.6 0.1 0.024 15.1 0.1 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MTABC_N PF16185.5 gi|299883400|ref|YP_003738953.1| - 0.14 11.6 1.0 0.28 10.7 1.0 1.4 1 0 0 1 1 1 0 Mitochondrial ABC-transporter N-terminal five TM region Cu-oxidase_3 PF07732.15 gi|299883401|ref|YP_003738954.1| - 5.6e-39 132.8 0.2 3.7e-32 110.8 0.0 3.3 3 0 0 3 3 3 3 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|299883401|ref|YP_003738954.1| - 1.9e-38 131.3 6.1 2.8e-23 82.2 3.3 4.9 3 2 0 3 3 3 3 Multicopper oxidase Cu-oxidase PF00394.22 gi|299883401|ref|YP_003738954.1| - 4.6e-25 88.6 0.0 2.9e-22 79.5 0.0 2.4 2 0 0 2 2 2 2 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|299883401|ref|YP_003738954.1| - 4.4e-05 23.5 0.0 0.0084 16.2 0.0 3.4 3 0 0 3 3 3 1 Cupredoxin-like domain SHOCT PF09851.9 gi|299883402|ref|YP_003738955.1| - 8.4e-09 34.9 3.4 1.1e-08 34.5 3.4 1.2 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|299883402|ref|YP_003738955.1| - 2.2e-05 24.4 2.3 2.2e-05 24.4 2.3 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1707) Phage_holin_3_6 PF07332.11 gi|299883402|ref|YP_003738955.1| - 0.046 13.8 5.9 0.062 13.3 5.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4381 PF14316.6 gi|299883402|ref|YP_003738955.1| - 0.2 11.9 0.0 0.2 11.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) DUF2207 PF09972.9 gi|299883402|ref|YP_003738955.1| - 0.33 9.6 1.1 0.36 9.6 1.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3377 PF11857.8 gi|299883402|ref|YP_003738955.1| - 0.69 9.9 2.7 0.5 10.3 0.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3377) RseC_MucC PF04246.12 gi|299883402|ref|YP_003738955.1| - 0.89 9.5 4.4 1.3 9.0 4.3 1.3 1 1 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF4051 PF13260.6 gi|299883402|ref|YP_003738955.1| - 1.2 8.9 0.0 1.2 8.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4051) Tad PF13400.6 gi|299883402|ref|YP_003738955.1| - 6.6 7.1 13.7 8.5 6.8 3.8 2.5 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF302 PF03625.14 gi|299883403|ref|YP_003738956.1| - 1.6e-26 92.0 0.0 2.4e-26 91.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Lyase_8_C PF02884.17 gi|299883403|ref|YP_003738956.1| - 0.074 13.5 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HMA PF00403.26 gi|299883404|ref|YP_003738957.1| - 2.7e-16 59.8 0.2 2.9e-16 59.6 0.2 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HTH_AsnC-type PF13404.6 gi|299883405|ref|YP_003738958.1| - 1.6e-15 56.7 0.3 3.2e-15 55.7 0.3 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|299883405|ref|YP_003738958.1| - 2e-15 56.1 0.1 3.1e-15 55.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|299883405|ref|YP_003738958.1| - 5.1e-06 26.3 0.0 8.5e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|299883405|ref|YP_003738958.1| - 2.5e-05 24.0 0.0 4.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|299883405|ref|YP_003738958.1| - 2.8e-05 24.1 1.0 4.4e-05 23.5 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|299883405|ref|YP_003738958.1| - 3.7e-05 23.5 0.6 9.3e-05 22.2 0.1 1.9 3 0 0 3 3 2 1 MarR family HTH_IclR PF09339.10 gi|299883405|ref|YP_003738958.1| - 0.0014 18.4 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|299883405|ref|YP_003738958.1| - 0.0019 18.3 0.0 0.0048 17.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|299883405|ref|YP_003738958.1| - 0.0025 17.7 0.0 0.006 16.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|299883405|ref|YP_003738958.1| - 0.0036 17.5 0.0 0.012 15.8 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|299883405|ref|YP_003738958.1| - 0.007 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Arc_trans_TRASH PF08394.10 gi|299883405|ref|YP_003738958.1| - 0.008 16.5 0.7 0.015 15.6 0.7 1.5 1 0 0 1 1 1 1 Archaeal TRASH domain LIM PF00412.22 gi|299883405|ref|YP_003738958.1| - 0.046 13.9 2.9 0.11 12.8 2.9 1.6 1 0 0 1 1 1 0 LIM domain HTH_Crp_2 PF13545.6 gi|299883405|ref|YP_003738958.1| - 0.05 13.6 0.0 0.094 12.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain zinc_ribbon_10 PF10058.9 gi|299883405|ref|YP_003738958.1| - 0.053 13.2 0.5 0.12 12.2 0.3 1.7 2 0 0 2 2 1 0 Predicted integral membrane zinc-ribbon metal-binding protein ATPase-cat_bd PF12156.8 gi|299883405|ref|YP_003738958.1| - 0.058 14.1 3.7 0.1 13.4 3.7 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase LexA_DNA_bind PF01726.16 gi|299883405|ref|YP_003738958.1| - 0.068 12.9 0.0 0.22 11.3 0.0 1.9 2 1 0 2 2 1 0 LexA DNA binding domain Zn_ribbon_recom PF13408.6 gi|299883405|ref|YP_003738958.1| - 0.15 12.6 0.6 0.31 11.6 0.6 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain HECT_2 PF09814.9 gi|299883405|ref|YP_003738958.1| - 0.28 10.0 1.6 0.34 9.7 0.0 1.8 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding Zn-ribbon_8 PF09723.10 gi|299883405|ref|YP_003738958.1| - 2.5 8.3 6.8 30 4.8 3.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain E1-E2_ATPase PF00122.20 gi|299883406|ref|YP_003738959.1| - 8.9e-50 168.7 2.8 1.1e-49 168.4 1.4 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|299883406|ref|YP_003738959.1| - 6.8e-43 147.4 14.8 2.4e-42 145.6 14.8 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|299883406|ref|YP_003738959.1| - 1.1e-28 99.4 0.1 9.5e-13 48.4 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|299883406|ref|YP_003738959.1| - 1e-05 25.5 0.9 0.016 14.9 0.6 2.6 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|299883406|ref|YP_003738959.1| - 0.0012 19.2 0.2 0.003 18.0 0.2 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DoxX PF07681.12 gi|299883408|ref|YP_003738961.1| - 4.5e-08 33.6 8.0 1.5e-07 31.9 8.0 1.9 1 1 0 1 1 1 1 DoxX DoxD PF04173.13 gi|299883408|ref|YP_003738961.1| - 0.086 12.7 4.8 0.18 11.7 4.8 1.6 1 1 0 1 1 1 0 TQO small subunit DoxD ArsP_1 PF03773.13 gi|299883409|ref|YP_003738962.1| - 8.4e-58 195.8 14.2 1.1e-57 195.4 14.2 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|299883409|ref|YP_003738962.1| - 4.8e-16 58.6 7.7 2.2e-11 43.7 2.0 2.3 2 0 0 2 2 2 2 YHS domain zf-FCS PF06467.14 gi|299883409|ref|YP_003738962.1| - 7.1e-06 25.9 1.8 0.014 15.3 0.2 2.4 2 0 0 2 2 2 2 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.16 gi|299883409|ref|YP_003738962.1| - 0.068 13.1 0.4 0.76 9.7 0.0 2.2 2 0 0 2 2 2 0 HIT zinc finger RPAP2_Rtr1 PF04181.13 gi|299883409|ref|YP_003738962.1| - 0.21 11.9 0.7 14 6.0 0.1 2.2 2 0 0 2 2 2 0 Rtr1/RPAP2 family PAP2 PF01569.21 gi|299883409|ref|YP_003738962.1| - 0.5 10.1 9.5 0.87 9.4 1.7 3.2 2 1 0 2 2 2 0 PAP2 superfamily DUF2256 PF10013.9 gi|299883409|ref|YP_003738962.1| - 4.2 7.6 6.8 73 3.6 0.0 3.2 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF2116 PF09889.9 gi|299883409|ref|YP_003738962.1| - 4.2 7.4 9.3 12 6.0 0.2 4.0 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Methyltransf_25 PF13649.6 gi|299883411|ref|YP_003738964.1| - 6.2e-16 58.9 0.0 5e-15 56.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|299883411|ref|YP_003738964.1| - 4.8e-14 52.8 0.0 1.4e-13 51.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|299883411|ref|YP_003738964.1| - 3.8e-13 49.5 0.0 6.5e-13 48.7 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|299883411|ref|YP_003738964.1| - 2.9e-10 40.2 0.0 5.3e-10 39.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|299883411|ref|YP_003738964.1| - 5.2e-06 26.0 0.0 7.3e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|299883411|ref|YP_003738964.1| - 1.8e-05 25.4 0.0 0.00022 21.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|299883411|ref|YP_003738964.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.10 gi|299883411|ref|YP_003738964.1| - 0.024 14.2 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|299883411|ref|YP_003738964.1| - 0.037 13.6 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain NodS PF05401.11 gi|299883411|ref|YP_003738964.1| - 0.085 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) TrwB_AAD_bind PF10412.9 gi|299883412|ref|YP_003738965.1| - 5.5e-09 35.4 0.1 0.0012 17.8 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.7 gi|299883412|ref|YP_003738965.1| - 0.00049 20.1 0.0 0.0025 17.8 0.0 2.3 2 0 0 2 2 2 1 TraM recognition site of TraD and TraG DUF87 PF01935.17 gi|299883412|ref|YP_003738965.1| - 0.00053 20.2 0.3 0.0055 16.8 0.3 2.4 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_16 PF13191.6 gi|299883412|ref|YP_003738965.1| - 0.0044 17.4 0.2 0.34 11.3 0.0 3.2 3 0 0 3 3 3 1 AAA ATPase domain Peptidase_M24_C PF16188.5 gi|299883412|ref|YP_003738965.1| - 0.14 12.2 0.1 0.37 10.9 0.1 1.7 1 0 0 1 1 1 0 C-terminal region of peptidase_M24 AAA_22 PF13401.6 gi|299883413|ref|YP_003738966.1| - 0.00015 22.0 0.4 0.068 13.4 0.0 3.3 3 0 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|299883413|ref|YP_003738966.1| - 0.014 15.4 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|299883413|ref|YP_003738966.1| - 0.042 13.7 0.0 0.096 12.6 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TrwB_AAD_bind PF10412.9 gi|299883413|ref|YP_003738966.1| - 0.046 12.6 0.2 0.11 11.4 0.1 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.6 gi|299883413|ref|YP_003738966.1| - 0.047 14.0 0.1 0.79 10.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|299883413|ref|YP_003738966.1| - 0.052 12.9 0.0 0.23 10.8 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family YqhG PF11079.8 gi|299883413|ref|YP_003738966.1| - 0.053 12.5 0.0 0.11 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function ABC_tran PF00005.27 gi|299883413|ref|YP_003738966.1| - 0.068 13.7 0.1 0.43 11.1 0.0 2.4 2 0 0 2 2 2 0 ABC transporter AAA_16 PF13191.6 gi|299883413|ref|YP_003738966.1| - 0.1 12.9 0.0 0.7 10.3 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain TcpE PF12648.7 gi|299883414|ref|YP_003738967.1| - 0.48 11.0 3.2 0.69 10.5 3.2 1.2 1 0 0 1 1 1 0 TcpE family CrgA PF06781.12 gi|299883416|ref|YP_003738969.1| - 5.6 7.1 5.8 0.38 10.9 0.5 1.9 2 1 0 2 2 2 0 Cell division protein CrgA FumaraseC_C PF10415.9 gi|299883417|ref|YP_003738970.1| - 0.011 16.2 0.0 0.015 15.7 0.0 1.2 1 0 0 1 1 1 0 Fumarase C C-terminus Beta_helix PF13229.6 gi|299883419|ref|YP_003738972.1| - 8.2e-06 25.8 3.5 0.00044 20.1 0.5 2.4 2 0 0 2 2 2 2 Right handed beta helix region UCR_Fe-S_N PF10399.9 gi|299883419|ref|YP_003738972.1| - 2 7.8 4.6 4.4 6.7 0.1 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CASP_C PF08172.12 gi|299883421|ref|YP_003738974.1| - 1e-05 25.1 4.6 1.4e-05 24.6 4.6 1.2 1 0 0 1 1 1 1 CASP C terminal bZIP_1 PF00170.21 gi|299883421|ref|YP_003738974.1| - 2.5e-05 24.3 3.4 4.5e-05 23.5 3.4 1.4 1 0 0 1 1 1 1 bZIP transcription factor ZapB PF06005.12 gi|299883421|ref|YP_003738974.1| - 9.1e-05 22.8 5.1 0.00016 22.1 5.1 1.4 1 0 0 1 1 1 1 Cell division protein ZapB bZIP_2 PF07716.15 gi|299883421|ref|YP_003738974.1| - 0.00012 22.1 3.4 0.00024 21.1 3.4 1.6 1 0 0 1 1 1 1 Basic region leucine zipper Jnk-SapK_ap_N PF09744.9 gi|299883421|ref|YP_003738974.1| - 0.00079 19.7 1.4 0.001 19.3 1.4 1.2 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 DivIC PF04977.15 gi|299883421|ref|YP_003738974.1| - 0.0013 18.5 3.6 0.0021 17.8 3.6 1.4 1 0 0 1 1 1 1 Septum formation initiator GAS PF13851.6 gi|299883421|ref|YP_003738974.1| - 0.0016 17.9 3.4 0.002 17.5 3.4 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding JIP_LZII PF16471.5 gi|299883421|ref|YP_003738974.1| - 0.0021 18.2 4.4 0.0037 17.4 4.4 1.5 1 0 0 1 1 1 1 JNK-interacting protein leucine zipper II Cnn_1N PF07989.11 gi|299883421|ref|YP_003738974.1| - 0.0031 17.6 3.0 0.0048 17.0 3.0 1.4 1 0 0 1 1 1 1 Centrosomin N-terminal motif 1 HALZ PF02183.18 gi|299883421|ref|YP_003738974.1| - 0.0052 17.0 3.6 0.012 15.8 3.6 1.7 1 0 0 1 1 1 1 Homeobox associated leucine zipper TolA_bind_tri PF16331.5 gi|299883421|ref|YP_003738974.1| - 0.017 15.2 5.1 0.031 14.3 5.1 1.5 1 0 0 1 1 1 0 TolA binding protein trimerisation CCDC73 PF15818.5 gi|299883421|ref|YP_003738974.1| - 0.024 12.5 2.2 0.029 12.3 2.2 1.0 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 73 family FlaC_arch PF05377.11 gi|299883421|ref|YP_003738974.1| - 0.028 14.8 4.6 0.043 14.2 4.0 1.6 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) UPF0242 PF06785.11 gi|299883421|ref|YP_003738974.1| - 0.036 14.2 2.3 0.037 14.1 2.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus LPP PF04728.13 gi|299883421|ref|YP_003738974.1| - 0.038 14.4 0.2 0.076 13.4 0.2 1.5 1 0 0 1 1 1 0 Lipoprotein leucine-zipper YabA PF06156.13 gi|299883421|ref|YP_003738974.1| - 0.058 14.0 1.6 0.083 13.5 1.6 1.3 1 0 0 1 1 1 0 Initiation control protein YabA DUF641 PF04859.12 gi|299883421|ref|YP_003738974.1| - 0.063 13.6 0.6 0.086 13.2 0.6 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Atg14 PF10186.9 gi|299883421|ref|YP_003738974.1| - 0.084 11.9 0.5 0.1 11.7 0.5 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3450 PF11932.8 gi|299883421|ref|YP_003738974.1| - 0.09 12.1 1.8 0.11 11.8 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4140 PF13600.6 gi|299883421|ref|YP_003738974.1| - 0.1 13.1 0.7 0.14 12.6 0.7 1.3 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) RasGAP_C PF03836.15 gi|299883421|ref|YP_003738974.1| - 0.13 12.4 3.1 0.19 11.9 3.1 1.2 1 0 0 1 1 1 0 RasGAP C-terminus Spc24 PF08286.11 gi|299883421|ref|YP_003738974.1| - 0.19 12.0 2.6 0.36 11.1 2.6 1.5 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 XhlA PF10779.9 gi|299883421|ref|YP_003738974.1| - 0.2 11.9 3.4 0.28 11.4 3.0 1.4 1 1 0 1 1 1 0 Haemolysin XhlA V_ATPase_I PF01496.19 gi|299883421|ref|YP_003738974.1| - 0.26 9.1 0.3 0.28 9.0 0.3 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family PhoU PF01895.19 gi|299883421|ref|YP_003738974.1| - 0.27 11.7 3.0 18 5.9 3.8 2.4 2 1 0 2 2 2 0 PhoU domain TSC22 PF01166.18 gi|299883421|ref|YP_003738974.1| - 0.61 10.4 10.2 2 8.8 8.1 2.5 1 1 1 2 2 2 0 TSC-22/dip/bun family Cep57_CLD_2 PF14197.6 gi|299883421|ref|YP_003738974.1| - 5.1 7.3 14.9 7 6.8 1.4 2.7 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 MFMR_assoc PF16596.5 gi|299883422|ref|YP_003738975.1| - 2.9 8.4 12.5 6.5 7.2 12.5 1.5 1 0 0 1 1 1 0 Disordered region downstream of MFMR HTH_29 PF13551.6 gi|299883423|ref|YP_003738976.1| - 0.0035 17.3 0.0 0.006 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|299883423|ref|YP_003738976.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain E1-E2_ATPase PF00122.20 gi|299883425|ref|YP_003738978.1| - 1.8e-50 171.0 0.2 1.8e-50 171.0 0.2 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|299883425|ref|YP_003738978.1| - 8.7e-42 143.8 7.9 8.7e-42 143.8 7.9 2.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|299883425|ref|YP_003738978.1| - 4.5e-16 59.0 0.0 2e-15 56.9 0.0 2.3 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|299883425|ref|YP_003738978.1| - 1.4e-05 24.9 0.7 0.0051 16.6 0.7 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|299883425|ref|YP_003738978.1| - 0.00038 20.9 0.4 0.0013 19.2 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_10 PF04967.12 gi|299883426|ref|YP_003738979.1| - 7.8e-15 54.4 0.0 1.3e-14 53.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|299883426|ref|YP_003738979.1| - 0.00012 21.8 0.3 0.00049 19.8 0.1 2.1 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|299883426|ref|YP_003738979.1| - 0.00018 21.3 0.1 0.00072 19.4 0.1 2.1 2 1 0 2 2 2 1 MarR family HTH_8 PF02954.19 gi|299883426|ref|YP_003738979.1| - 0.0017 18.1 0.0 0.0036 17.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_24 PF13412.6 gi|299883426|ref|YP_003738979.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|299883426|ref|YP_003738979.1| - 0.024 14.7 0.8 0.076 13.1 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain IQ_SEC7_PH PF16453.5 gi|299883426|ref|YP_003738979.1| - 0.025 14.5 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 PH domain HTH_5 PF01022.20 gi|299883426|ref|YP_003738979.1| - 0.052 13.4 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|299883426|ref|YP_003738979.1| - 0.063 13.1 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|299883426|ref|YP_003738979.1| - 0.067 13.2 0.4 2.1 8.4 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Img2 PF05046.14 gi|299883426|ref|YP_003738979.1| - 0.14 12.5 0.0 2.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial large subunit ribosomal protein (Img2) HTH_psq PF05225.16 gi|299883426|ref|YP_003738979.1| - 0.15 11.9 0.1 0.3 10.8 0.1 1.6 1 1 0 1 1 1 0 helix-turn-helix, Psq domain DUF16 PF01519.16 gi|299883429|ref|YP_003738982.1| - 0.0012 19.3 2.1 0.0031 18.0 2.1 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|299883429|ref|YP_003738982.1| - 0.002 18.4 2.0 0.0068 16.7 1.8 1.9 2 0 0 2 2 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|299883429|ref|YP_003738982.1| - 0.0027 17.7 2.9 0.0027 17.7 2.9 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|299883429|ref|YP_003738982.1| - 0.0031 16.5 5.2 0.0054 15.7 5.2 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein ATG16 PF08614.11 gi|299883429|ref|YP_003738982.1| - 0.0056 16.9 2.7 0.0056 16.9 2.7 1.6 2 0 0 2 2 1 1 Autophagy protein 16 (ATG16) Bacillus_HBL PF05791.11 gi|299883429|ref|YP_003738982.1| - 0.0058 16.5 2.9 0.055 13.3 0.4 2.7 2 1 1 3 3 3 1 Bacillus haemolytic enterotoxin (HBL) UPF0242 PF06785.11 gi|299883429|ref|YP_003738982.1| - 0.006 16.7 1.2 0.0092 16.1 1.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus Wtap PF17098.5 gi|299883429|ref|YP_003738982.1| - 0.0071 16.3 1.2 0.013 15.4 1.2 1.4 1 0 0 1 1 1 1 WTAP/Mum2p family TMF_DNA_bd PF12329.8 gi|299883429|ref|YP_003738982.1| - 0.0077 16.2 6.1 0.016 15.2 5.1 1.9 1 1 1 2 2 2 1 TATA element modulatory factor 1 DNA binding Atg14 PF10186.9 gi|299883429|ref|YP_003738982.1| - 0.0091 15.1 0.0 0.0095 15.1 0.0 1.2 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 DUF948 PF06103.11 gi|299883429|ref|YP_003738982.1| - 0.011 15.9 3.4 0.011 15.9 3.4 2.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) FlaC_arch PF05377.11 gi|299883429|ref|YP_003738982.1| - 0.017 15.5 3.0 0.5 10.8 0.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) SlyX PF04102.12 gi|299883429|ref|YP_003738982.1| - 0.018 15.6 9.2 0.087 13.5 5.7 2.9 2 1 1 3 3 3 0 SlyX Tektin PF03148.14 gi|299883429|ref|YP_003738982.1| - 0.018 13.8 1.4 0.028 13.2 1.4 1.2 1 0 0 1 1 1 0 Tektin family Filament PF00038.21 gi|299883429|ref|YP_003738982.1| - 0.019 14.5 2.5 0.032 13.8 2.5 1.2 1 0 0 1 1 1 0 Intermediate filament protein Laminin_II PF06009.12 gi|299883429|ref|YP_003738982.1| - 0.022 14.8 5.0 0.09 12.8 4.1 2.0 2 0 0 2 2 2 0 Laminin Domain II Spc29 PF17082.5 gi|299883429|ref|YP_003738982.1| - 0.023 14.6 0.3 0.04 13.8 0.2 1.4 1 1 0 1 1 1 0 Spindle Pole Component 29 HSBP1 PF06825.12 gi|299883429|ref|YP_003738982.1| - 0.026 14.4 1.6 1.2 9.0 0.0 2.6 2 1 0 2 2 2 0 Heat shock factor binding protein 1 DUF4795 PF16043.5 gi|299883429|ref|YP_003738982.1| - 0.032 13.8 0.6 0.052 13.1 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) DUF4404 PF14357.6 gi|299883429|ref|YP_003738982.1| - 0.035 14.7 3.3 0.49 11.1 3.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) BST2 PF16716.5 gi|299883429|ref|YP_003738982.1| - 0.044 14.4 5.0 0.091 13.4 4.0 2.0 2 0 0 2 2 1 0 Bone marrow stromal antigen 2 Spectrin PF00435.21 gi|299883429|ref|YP_003738982.1| - 0.045 14.3 3.0 0.11 13.0 3.0 1.7 1 0 0 1 1 1 0 Spectrin repeat Lipoprotein_6 PF01441.19 gi|299883429|ref|YP_003738982.1| - 0.051 13.6 1.4 0.089 12.8 0.0 1.8 2 0 0 2 2 2 0 Lipoprotein HemX PF04375.14 gi|299883429|ref|YP_003738982.1| - 0.065 12.5 3.1 0.1 11.9 3.1 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Golgin_A5 PF09787.9 gi|299883429|ref|YP_003738982.1| - 0.069 12.6 2.5 0.11 11.9 2.5 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 SufE PF02657.15 gi|299883429|ref|YP_003738982.1| - 0.075 12.9 0.3 0.36 10.7 0.1 2.1 2 0 0 2 2 2 0 Fe-S metabolism associated domain DUF3584 PF12128.8 gi|299883429|ref|YP_003738982.1| - 0.079 10.5 2.4 0.11 10.0 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) SKA1 PF07160.12 gi|299883429|ref|YP_003738982.1| - 0.083 12.7 3.4 0.077 12.8 2.8 1.4 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 1 Nup54 PF13874.6 gi|299883429|ref|YP_003738982.1| - 0.088 12.9 2.3 0.18 11.9 1.5 1.9 2 1 0 2 2 1 0 Nucleoporin complex subunit 54 Fzo_mitofusin PF04799.13 gi|299883429|ref|YP_003738982.1| - 0.088 12.3 1.7 0.15 11.6 1.7 1.4 1 0 0 1 1 1 0 fzo-like conserved region Snapin_Pallidin PF14712.6 gi|299883429|ref|YP_003738982.1| - 0.09 13.2 2.0 0.21 12.1 2.0 1.6 1 0 0 1 1 1 0 Snapin/Pallidin NPV_P10 PF05531.12 gi|299883429|ref|YP_003738982.1| - 0.097 13.1 5.3 0.64 10.5 5.3 2.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF2313 PF10076.9 gi|299883429|ref|YP_003738982.1| - 0.12 12.2 0.6 6 6.7 0.2 2.7 3 0 0 3 3 3 0 Uncharacterised protein conserved in bacteria (DUF2313) TMPIT PF07851.13 gi|299883429|ref|YP_003738982.1| - 0.15 11.3 0.7 0.22 10.7 0.7 1.2 1 0 0 1 1 1 0 TMPIT-like protein ADIP PF11559.8 gi|299883429|ref|YP_003738982.1| - 0.22 11.6 7.2 0.059 13.5 4.3 1.5 2 0 0 2 2 1 0 Afadin- and alpha -actinin-Binding DUF4407 PF14362.6 gi|299883429|ref|YP_003738982.1| - 0.35 10.2 3.2 0.46 9.8 3.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2937 PF11157.8 gi|299883429|ref|YP_003738982.1| - 0.39 10.4 1.8 0.71 9.6 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) COG2 PF06148.11 gi|299883429|ref|YP_003738982.1| - 0.45 10.6 3.1 0.51 10.4 1.9 1.6 2 0 0 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Csm1_N PF18504.1 gi|299883429|ref|YP_003738982.1| - 0.51 10.7 5.9 6.3 7.2 4.1 2.4 1 1 0 2 2 2 0 Csm1 N-terminal domain HalX PF08663.10 gi|299883429|ref|YP_003738982.1| - 0.57 10.5 7.3 6.3 7.2 4.9 2.7 2 1 0 2 2 2 0 HalX domain CP12 PF02672.15 gi|299883429|ref|YP_003738982.1| - 0.8 10.5 7.3 9.8 7.0 4.8 2.9 3 1 1 4 4 2 0 CP12 domain XhlA PF10779.9 gi|299883429|ref|YP_003738982.1| - 1 9.6 6.0 3.4 7.9 1.9 2.7 3 0 0 3 3 2 0 Haemolysin XhlA ZapB PF06005.12 gi|299883429|ref|YP_003738982.1| - 1.4 9.4 8.3 2.8 8.4 8.3 1.5 1 1 0 1 1 1 0 Cell division protein ZapB Synaptobrevin PF00957.21 gi|299883429|ref|YP_003738982.1| - 2.6 7.9 4.7 1.9 8.4 2.8 1.7 2 0 0 2 2 1 0 Synaptobrevin bZIP_2 PF07716.15 gi|299883429|ref|YP_003738982.1| - 7.4 6.7 7.8 1.2e+02 2.8 8.4 2.3 2 0 0 2 2 2 0 Basic region leucine zipper MarR PF01047.22 gi|299883430|ref|YP_003738983.1| - 0.00047 20.0 0.0 0.00057 19.8 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|299883430|ref|YP_003738983.1| - 0.0019 18.0 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|299883430|ref|YP_003738983.1| - 0.0041 17.1 0.1 0.005 16.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|299883430|ref|YP_003738983.1| - 0.008 16.1 0.4 0.01 15.7 0.4 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|299883430|ref|YP_003738983.1| - 0.02 14.8 0.1 0.022 14.6 0.1 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|299883430|ref|YP_003738983.1| - 0.027 14.2 0.0 0.034 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_15 PF12324.8 gi|299883430|ref|YP_003738983.1| - 0.074 13.0 0.1 0.1 12.6 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase HTH_24 PF13412.6 gi|299883430|ref|YP_003738983.1| - 0.075 12.6 0.1 0.16 11.6 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding RHH_1 PF01402.21 gi|299883431|ref|YP_003738984.1| - 0.00015 21.6 3.7 0.00033 20.5 3.7 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HALZ PF02183.18 gi|299883431|ref|YP_003738984.1| - 0.0003 21.0 4.0 0.00064 19.9 4.0 1.7 1 0 0 1 1 1 1 Homeobox associated leucine zipper CENP-H PF05837.12 gi|299883431|ref|YP_003738984.1| - 0.0015 18.9 3.8 0.0025 18.2 3.8 1.3 1 0 0 1 1 1 1 Centromere protein H (CENP-H) CopG_antitoxin PF12441.8 gi|299883431|ref|YP_003738984.1| - 0.0053 17.3 0.0 0.011 16.3 0.0 1.5 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system DUF3450 PF11932.8 gi|299883431|ref|YP_003738984.1| - 0.023 14.0 6.5 0.029 13.7 6.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) TLE_N PF03920.15 gi|299883431|ref|YP_003738984.1| - 0.024 14.7 3.1 0.028 14.5 2.3 1.5 1 1 0 1 1 1 0 Groucho/TLE N-terminal Q-rich domain CCCAP PF15964.5 gi|299883431|ref|YP_003738984.1| - 0.038 12.3 8.3 0.046 12.0 8.3 1.0 1 0 0 1 1 1 0 Centrosomal colon cancer autoantigen protein family MSG PF02349.15 gi|299883431|ref|YP_003738984.1| - 0.043 14.0 2.7 0.056 13.6 2.7 1.3 1 0 0 1 1 1 0 Major surface glycoprotein DUF4407 PF14362.6 gi|299883431|ref|YP_003738984.1| - 0.068 12.5 2.7 0.076 12.4 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ADIP PF11559.8 gi|299883431|ref|YP_003738984.1| - 0.13 12.4 8.5 0.13 12.3 8.2 1.3 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding Golgin_A5 PF09787.9 gi|299883431|ref|YP_003738984.1| - 0.19 11.2 6.9 0.22 10.9 6.9 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 Jnk-SapK_ap_N PF09744.9 gi|299883431|ref|YP_003738984.1| - 0.2 11.9 9.8 0.27 11.5 9.8 1.2 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 NUDE_C PF04880.13 gi|299883431|ref|YP_003738984.1| - 0.24 11.9 8.3 0.27 11.7 8.3 1.3 1 0 0 1 1 1 0 NUDE protein, C-terminal conserved region GIT1_C PF12205.8 gi|299883431|ref|YP_003738984.1| - 0.25 11.4 3.4 0.41 10.8 3.3 1.6 1 1 0 1 1 1 0 G protein-coupled receptor kinase-interacting protein 1 C term ZapB PF06005.12 gi|299883431|ref|YP_003738984.1| - 0.33 11.4 10.2 1.5 9.3 10.2 2.0 1 1 0 1 1 1 0 Cell division protein ZapB Spc24 PF08286.11 gi|299883431|ref|YP_003738984.1| - 0.49 10.7 5.0 0.63 10.3 4.3 1.5 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 TMF_TATA_bd PF12325.8 gi|299883431|ref|YP_003738984.1| - 0.87 9.8 11.0 1.5 9.0 11.0 1.5 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014300.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014300.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014300.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halalkalicoccus_jeotgali_B3_uid50305/NC_014300.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:08:59 2019 # [ok]