# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- PLDc_2 PF13091.1 gi|325967529|ref|YP_004243721.1| - 1.2e-24 86.5 0.0 3.1e-13 49.5 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|325967529|ref|YP_004243721.1| - 0.00017 21.2 8.0 0.02 14.6 1.5 2.7 2 0 0 2 2 2 2 Phospholipase D Active site motif PP_kinase_C PF13090.1 gi|325967529|ref|YP_004243721.1| - 0.00027 19.6 0.3 0.42 9.1 0.0 2.2 2 0 0 2 2 2 2 Polyphosphate kinase C-terminal domain Regulator_TrmB PF11495.3 gi|325967529|ref|YP_004243721.1| - 0.001 18.1 0.1 0.002 17.1 0.0 1.7 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB Rifin_STEVOR PF02009.11 gi|325967529|ref|YP_004243721.1| - 0.052 13.1 0.3 0.077 12.6 0.2 1.4 1 0 0 1 1 1 0 Rifin/stevor family DUF2615 PF11027.3 gi|325967529|ref|YP_004243721.1| - 0.056 13.3 0.1 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) HXXEE PF13787.1 gi|325967529|ref|YP_004243721.1| - 0.1 12.9 0.1 0.1 12.9 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function with HXXEE motif PI-PLC-X PF00388.14 gi|325967530|ref|YP_004243722.1| - 0.029 13.7 0.1 0.05 13.0 0.1 1.4 1 0 0 1 1 1 0 Phosphatidylinositol-specific phospholipase C, X domain FbpA PF05833.6 gi|325967531|ref|YP_004243723.1| - 0.085 11.3 0.0 0.099 11.1 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Aminotran_1_2 PF00155.16 gi|325967532|ref|YP_004243724.1| - 2.2e-78 263.7 0.0 2.5e-78 263.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|325967532|ref|YP_004243724.1| - 3.5e-14 52.6 0.0 6.8e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|325967532|ref|YP_004243724.1| - 2.2e-10 39.8 0.0 6.3e-10 38.3 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|325967532|ref|YP_004243724.1| - 3.5e-08 32.1 0.0 6.1e-08 31.3 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|325967532|ref|YP_004243724.1| - 2.4e-07 30.1 0.0 4.2e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Radical_SAM PF04055.16 gi|325967532|ref|YP_004243724.1| - 0.028 14.5 0.0 5.4 7.1 0.0 3.0 2 1 1 3 3 3 0 Radical SAM superfamily OKR_DC_1 PF01276.15 gi|325967532|ref|YP_004243724.1| - 0.048 12.1 0.0 0.081 11.4 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Phage_T7_Capsid PF05396.6 gi|325967532|ref|YP_004243724.1| - 0.065 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Phage T7 capsid assembly protein Cupin_2 PF07883.6 gi|325967533|ref|YP_004243725.1| - 1.2e-14 53.5 0.0 1.5e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|325967533|ref|YP_004243725.1| - 8.8e-09 35.1 0.0 1.2e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|325967533|ref|YP_004243725.1| - 1.5e-06 27.7 0.0 2.3e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|325967533|ref|YP_004243725.1| - 1e-05 25.1 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.2 gi|325967533|ref|YP_004243725.1| - 0.0023 17.7 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Ectoine_synth PF06339.7 gi|325967533|ref|YP_004243725.1| - 0.0058 16.5 0.0 0.0066 16.3 0.0 1.0 1 0 0 1 1 1 1 Ectoine synthase DUF1637 PF07847.7 gi|325967533|ref|YP_004243725.1| - 0.0073 15.6 0.0 0.0078 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) Cupin_3 PF05899.7 gi|325967533|ref|YP_004243725.1| - 0.012 14.9 0.0 0.021 14.2 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) CENP-C_C PF11699.3 gi|325967533|ref|YP_004243725.1| - 0.047 13.6 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_6 PF12852.2 gi|325967533|ref|YP_004243725.1| - 0.082 12.5 0.0 0.091 12.3 0.0 1.1 1 0 0 1 1 1 0 Cupin Beta-lactamase PF00144.19 gi|325967534|ref|YP_004243726.1| - 1.3e-64 218.3 0.0 1.9e-64 217.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|325967534|ref|YP_004243726.1| - 6.6e-28 96.6 0.7 1.4e-27 95.5 0.5 1.6 1 0 0 1 1 1 1 Pab87 octamerisation domain Lactamase_B PF00753.22 gi|325967535|ref|YP_004243727.1| - 9.7e-23 80.8 0.0 2.3e-22 79.6 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|325967535|ref|YP_004243727.1| - 1.5e-05 24.6 0.0 2.2e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Methyltransf_21 PF05050.7 gi|325967536|ref|YP_004243728.1| - 1.9e-12 47.4 0.0 2.3e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|325967536|ref|YP_004243728.1| - 9.3e-05 22.9 0.0 0.00011 22.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|325967536|ref|YP_004243728.1| - 0.00046 19.8 0.0 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.10 gi|325967536|ref|YP_004243728.1| - 0.069 12.5 0.0 0.098 12.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Transp_cyt_pur PF02133.10 gi|325967537|ref|YP_004243729.1| - 2.5e-35 121.9 45.7 5.9e-35 120.6 31.6 1.6 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AA_permease PF00324.16 gi|325967538|ref|YP_004243730.1| - 2.7e-34 118.3 55.7 1.1e-33 116.3 38.7 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|325967538|ref|YP_004243730.1| - 1e-30 106.6 52.6 1.5e-30 106.0 36.4 1.2 1 0 0 1 1 1 1 Amino acid permease MFS_1 PF07690.11 gi|325967539|ref|YP_004243731.1| - 6.5e-39 133.6 72.0 3.1e-35 121.5 32.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Thermopsin PF05317.6 gi|325967540|ref|YP_004243732.1| - 2.7e-53 180.5 20.1 2.7e-53 180.5 13.9 3.7 2 2 2 4 4 4 1 Thermopsin Asp_protease_2 PF13650.1 gi|325967541|ref|YP_004243733.1| - 9.7e-05 22.8 0.1 0.00016 22.0 0.1 1.4 1 1 1 2 2 2 1 Aspartyl protease RVP PF00077.15 gi|325967541|ref|YP_004243733.1| - 0.0004 20.2 0.1 0.00045 20.0 0.1 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease KorB_C PF06613.6 gi|325967541|ref|YP_004243733.1| - 0.059 12.8 0.1 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 KorB C-terminal beta-barrel domain Abhydrolase_6 PF12697.2 gi|325967542|ref|YP_004243734.1| - 3.1e-12 46.8 0.0 4.7e-12 46.2 0.0 1.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|325967542|ref|YP_004243734.1| - 2.7e-09 36.9 0.0 3.4e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|325967542|ref|YP_004243734.1| - 2.8e-06 27.0 0.0 4.4e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.8 gi|325967542|ref|YP_004243734.1| - 0.0026 17.4 0.0 0.0056 16.2 0.0 1.5 1 0 0 1 1 1 1 PGAP1-like protein Ndr PF03096.9 gi|325967542|ref|YP_004243734.1| - 0.088 11.2 0.0 0.13 10.6 0.0 1.2 1 0 0 1 1 1 0 Ndr family Tic20 PF09685.5 gi|325967543|ref|YP_004243735.1| - 0.00039 20.3 9.5 0.00048 20.0 6.6 1.1 1 0 0 1 1 1 1 Tic20-like protein DUF2583 PF10762.4 gi|325967543|ref|YP_004243735.1| - 0.16 12.0 3.8 0.27 11.3 2.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) DUF1427 PF07235.6 gi|325967543|ref|YP_004243735.1| - 1.4 9.0 7.1 0.12 12.5 1.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) ECH PF00378.15 gi|325967544|ref|YP_004243736.1| - 8.3e-44 149.5 0.0 9.6e-44 149.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|325967544|ref|YP_004243736.1| - 0.04 13.7 0.0 0.81 9.4 0.0 2.1 2 0 0 2 2 2 0 Peptidase family S49 Antitoxin-MazE PF04014.13 gi|325967545|ref|YP_004243737.1| - 2.5e-13 49.4 0.4 3.2e-13 49.0 0.3 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Imm45 PF15603.1 gi|325967545|ref|YP_004243737.1| - 0.025 14.7 0.3 0.028 14.5 0.2 1.1 1 0 0 1 1 1 0 Immunity protein 45 CDC48_N PF02359.13 gi|325967545|ref|YP_004243737.1| - 0.072 13.0 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain PIN PF01850.16 gi|325967546|ref|YP_004243738.1| - 1.3e-11 44.9 0.2 1.4e-11 44.7 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF1474 PF07342.6 gi|325967546|ref|YP_004243738.1| - 0.094 12.9 1.6 0.17 12.1 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1474) Gly-zipper_Omp PF13488.1 gi|325967547|ref|YP_004243739.1| - 0.58 9.8 4.9 10 5.8 0.1 2.7 2 1 1 3 3 3 0 Glycine zipper Trep_Strep PF09605.5 gi|325967547|ref|YP_004243739.1| - 5.5 6.6 14.4 95 2.5 10.0 2.2 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) DUF2878 PF11086.3 gi|325967547|ref|YP_004243739.1| - 6.5 6.7 12.5 0.38 10.7 2.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2878) Penicil_amidase PF01804.13 gi|325967548|ref|YP_004243740.1| - 4.1e-163 545.1 0.5 5.4e-163 544.8 0.3 1.0 1 0 0 1 1 1 1 Penicillin amidase Chromo_shadow PF01393.14 gi|325967548|ref|YP_004243740.1| - 0.094 12.5 0.1 0.57 10.0 0.0 2.1 2 0 0 2 2 2 0 Chromo shadow domain Sugar_tr PF00083.19 gi|325967549|ref|YP_004243741.1| - 4.8e-51 173.7 26.4 6.2e-51 173.3 18.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325967549|ref|YP_004243741.1| - 1.9e-33 115.6 59.0 2.1e-22 79.3 17.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|325967549|ref|YP_004243741.1| - 0.002 18.0 1.9 0.002 18.0 1.3 4.1 2 2 1 4 4 4 2 Protein of unknown function (DUF1228) Abhydrolase_6 PF12697.2 gi|325967550|ref|YP_004243742.1| - 2.6e-34 119.1 0.0 3e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|325967550|ref|YP_004243742.1| - 2.5e-29 102.4 0.0 3.4e-28 98.7 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|325967550|ref|YP_004243742.1| - 9.2e-18 64.3 0.0 9.3e-17 61.1 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|325967550|ref|YP_004243742.1| - 5.9e-08 32.1 0.0 0.0014 17.9 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Ndr PF03096.9 gi|325967550|ref|YP_004243742.1| - 3.1e-07 29.1 0.0 5.8e-07 28.2 0.0 1.5 1 1 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.5 gi|325967550|ref|YP_004243742.1| - 6.1e-05 22.8 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|325967550|ref|YP_004243742.1| - 0.013 14.9 0.0 0.058 12.8 0.0 1.9 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase FSH1 PF03959.8 gi|325967550|ref|YP_004243742.1| - 0.037 13.4 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.8 gi|325967550|ref|YP_004243742.1| - 0.037 13.5 0.0 0.064 12.8 0.0 1.3 1 1 0 1 1 1 0 alpha/beta hydrolase fold Esterase PF00756.15 gi|325967550|ref|YP_004243742.1| - 0.042 13.2 0.0 0.067 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Esterase_phd PF10503.4 gi|325967550|ref|YP_004243742.1| - 0.05 12.8 0.0 0.24 10.6 0.0 1.9 2 0 0 2 2 2 0 Esterase PHB depolymerase DLH PF01738.13 gi|325967550|ref|YP_004243742.1| - 0.055 12.7 0.0 5.4 6.2 0.0 2.6 2 1 1 3 3 3 0 Dienelactone hydrolase family AMP-binding PF00501.23 gi|325967551|ref|YP_004243743.1| - 7.5e-77 258.4 0.0 9.2e-77 258.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325967551|ref|YP_004243743.1| - 2.4e-17 63.6 0.8 4.1e-17 62.8 0.6 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACP_syn_III_C PF08541.5 gi|325967552|ref|YP_004243744.1| - 2.9e-20 72.0 0.1 7e-20 70.8 0.0 1.6 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|325967552|ref|YP_004243744.1| - 1.1e-12 47.3 0.3 2e-12 46.6 0.2 1.4 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.7 gi|325967552|ref|YP_004243744.1| - 0.00031 19.9 0.8 0.0012 18.0 0.2 2.0 1 1 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein CTC1_2 PF15491.1 gi|325967552|ref|YP_004243744.1| - 0.013 14.5 0.3 0.031 13.3 0.2 1.6 1 1 0 1 1 1 0 CST, telomere maintenance, complex subunit CTC1 TetR_N PF00440.18 gi|325967553|ref|YP_004243745.1| - 3.7e-17 61.6 0.1 7.6e-17 60.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_9 PF14514.1 gi|325967553|ref|YP_004243745.1| - 0.00095 18.9 0.6 0.0019 17.9 0.2 1.6 2 0 0 2 2 2 1 Transcriptional regulator, TetR, C-terminal Erf4 PF10256.4 gi|325967553|ref|YP_004243745.1| - 0.0018 18.1 0.4 0.033 14.0 0.0 2.3 2 1 0 2 2 2 1 Golgin subfamily A member 7/ERF4 family Apc4 PF12896.2 gi|325967553|ref|YP_004243745.1| - 0.023 13.9 0.1 0.099 11.9 0.0 1.9 1 1 1 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 4 Acyl-CoA_dh_1 PF00441.19 gi|325967554|ref|YP_004243746.1| - 7.4e-39 133.2 1.1 1.1e-38 132.7 0.2 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|325967554|ref|YP_004243746.1| - 1.9e-12 46.4 0.3 3.5e-12 45.6 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|325967554|ref|YP_004243746.1| - 7.4e-11 42.4 0.3 1.8e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|325967555|ref|YP_004243747.1| - 1.5e-74 250.8 0.0 1.8e-74 250.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325967555|ref|YP_004243747.1| - 1.6e-12 48.2 0.0 3.4e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain CBS PF00571.23 gi|325967556|ref|YP_004243748.1| - 2e-25 88.2 1.2 5.5e-12 45.2 0.0 2.3 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|325967556|ref|YP_004243748.1| - 0.034 14.2 0.1 0.35 10.9 0.1 2.2 2 1 0 2 2 2 0 Ribosomal protein L9, C-terminal domain POR PF01558.13 gi|325967557|ref|YP_004243749.1| - 3.7e-23 82.3 0.0 4.5e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|325967558|ref|YP_004243750.1| - 5.6e-12 44.7 13.4 3.4e-06 26.4 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|325967558|ref|YP_004243750.1| - 3.4e-10 40.1 30.4 1.2e-06 28.8 7.2 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325967558|ref|YP_004243750.1| - 2.3e-09 36.5 11.0 0.0002 21.1 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325967558|ref|YP_004243750.1| - 1.4e-08 34.2 12.9 0.00029 20.5 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325967558|ref|YP_004243750.1| - 1.2e-07 31.3 20.8 2.6e-05 23.9 7.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325967558|ref|YP_004243750.1| - 8.8e-07 28.8 4.9 0.0085 16.1 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|325967558|ref|YP_004243750.1| - 1e-06 28.4 12.0 8e-05 22.4 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325967558|ref|YP_004243750.1| - 1.8e-06 28.1 10.6 4.4e-06 26.8 7.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325967558|ref|YP_004243750.1| - 2.4e-06 27.9 8.2 0.0021 18.5 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|325967558|ref|YP_004243750.1| - 2.6e-05 24.2 12.3 0.0044 17.2 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|325967558|ref|YP_004243750.1| - 4.1e-05 23.9 6.4 0.04 14.3 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325967558|ref|YP_004243750.1| - 0.00048 20.8 11.2 0.028 15.1 1.5 2.1 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|325967558|ref|YP_004243750.1| - 0.00068 19.9 8.8 0.068 13.5 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|325967558|ref|YP_004243750.1| - 0.0031 17.8 11.8 0.74 10.2 8.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|325967558|ref|YP_004243750.1| - 0.0093 16.4 14.9 0.05 14.1 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain FrhB_FdhB_C PF04432.8 gi|325967558|ref|YP_004243750.1| - 0.48 9.8 6.6 0.086 12.2 0.4 2.0 1 1 1 2 2 2 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus TPP_enzyme_C PF02775.16 gi|325967559|ref|YP_004243751.1| - 3.1e-31 108.0 0.0 4.1e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Phage_holin_2 PF04550.7 gi|325967559|ref|YP_004243751.1| - 0.02 14.9 0.2 0.048 13.7 0.1 1.6 1 0 0 1 1 1 0 Phage holin family 2 Methyltransf_26 PF13659.1 gi|325967559|ref|YP_004243751.1| - 0.092 12.7 0.1 0.26 11.3 0.1 1.7 1 1 0 1 1 1 0 Methyltransferase domain POR_N PF01855.14 gi|325967560|ref|YP_004243752.1| - 3.2e-64 216.5 0.3 4.1e-64 216.2 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|325967560|ref|YP_004243752.1| - 2.1e-09 37.0 0.4 5.2e-09 35.8 0.2 1.7 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|325967560|ref|YP_004243752.1| - 2e-06 27.7 0.0 3.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain SDH_sah PF01972.11 gi|325967561|ref|YP_004243753.1| - 2e-124 414.0 0.7 2.3e-124 413.8 0.5 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|325967561|ref|YP_004243753.1| - 4.7e-08 32.8 0.1 1.5e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.13 gi|325967561|ref|YP_004243753.1| - 0.00012 21.9 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 ECH PF00378.15 gi|325967561|ref|YP_004243753.1| - 0.092 11.8 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase family Dak1_2 PF13684.1 gi|325967561|ref|YP_004243753.1| - 0.12 11.2 2.0 0.28 10.0 0.1 1.9 2 0 0 2 2 2 0 Dihydroxyacetone kinase family DUF4181 PF13789.1 gi|325967562|ref|YP_004243754.1| - 0.056 13.3 9.9 0.59 10.0 2.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4181) BPD_transp_2 PF02653.11 gi|325967562|ref|YP_004243754.1| - 0.26 10.2 8.1 0.87 8.4 5.6 1.7 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component Amnionless PF14828.1 gi|325967562|ref|YP_004243754.1| - 0.41 9.0 2.9 0.25 9.7 0.3 1.8 1 1 1 2 2 2 0 Amnionless DUF805 PF05656.9 gi|325967562|ref|YP_004243754.1| - 1.6 8.5 6.6 1.9 8.3 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF805) DUF912 PF06024.7 gi|325967562|ref|YP_004243754.1| - 2.6 8.1 10.7 1.4 9.0 0.9 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF3753 PF12575.3 gi|325967562|ref|YP_004243754.1| - 2.8 7.7 11.5 0.35 10.6 1.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) DUF3784 PF12650.2 gi|325967562|ref|YP_004243754.1| - 3.2 7.7 10.1 5.1 7.0 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Chordopox_A33R PF05966.7 gi|325967562|ref|YP_004243754.1| - 4.7 5.9 6.8 0.86 8.3 0.5 2.1 2 0 0 2 2 2 0 Chordopoxvirus A33R protein Peptidase_M20 PF01546.23 gi|325967563|ref|YP_004243755.1| - 3.5e-31 108.1 0.0 4.2e-31 107.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|325967563|ref|YP_004243755.1| - 1.9e-16 59.8 0.0 9.1e-16 57.5 0.0 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|325967563|ref|YP_004243755.1| - 0.00029 20.6 0.0 0.00047 19.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 DUF4164 PF13747.1 gi|325967563|ref|YP_004243755.1| - 0.12 12.4 0.0 0.6 10.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) AAA_5 PF07728.9 gi|325967564|ref|YP_004243756.1| - 4.3e-13 49.1 0.0 4.2e-12 45.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|325967564|ref|YP_004243756.1| - 1e-05 25.6 0.0 0.00019 21.4 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|325967564|ref|YP_004243756.1| - 2.4e-05 24.5 0.0 0.00016 21.8 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|325967564|ref|YP_004243756.1| - 0.0006 19.7 0.0 0.0017 18.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|325967564|ref|YP_004243756.1| - 0.00092 20.0 0.0 0.0036 18.0 0.0 2.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|325967564|ref|YP_004243756.1| - 0.003 17.8 0.0 0.015 15.5 0.0 2.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|325967564|ref|YP_004243756.1| - 0.0031 16.9 0.0 0.0057 16.1 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|325967564|ref|YP_004243756.1| - 0.0076 15.0 0.0 0.012 14.3 0.0 1.2 1 0 0 1 1 1 1 TIP49 C-terminus AAA_24 PF13479.1 gi|325967564|ref|YP_004243756.1| - 0.0083 15.7 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|325967564|ref|YP_004243756.1| - 0.0085 15.1 0.0 0.02 13.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_3 PF07726.6 gi|325967564|ref|YP_004243756.1| - 0.0086 15.6 0.0 1.1 8.8 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|325967564|ref|YP_004243756.1| - 0.011 15.2 0.2 1.1 8.6 0.1 2.7 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|325967564|ref|YP_004243756.1| - 0.016 14.6 0.0 0.2 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|325967564|ref|YP_004243756.1| - 0.02 14.0 0.1 0.043 12.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|325967564|ref|YP_004243756.1| - 0.021 14.5 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|325967564|ref|YP_004243756.1| - 0.025 14.7 0.1 0.3 11.2 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|325967564|ref|YP_004243756.1| - 0.044 14.1 0.0 0.77 10.0 0.0 2.4 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.9 gi|325967564|ref|YP_004243756.1| - 0.072 12.9 0.0 0.4 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Zeta_toxin PF06414.7 gi|325967564|ref|YP_004243756.1| - 0.088 11.8 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin OmpH PF03938.9 gi|325967565|ref|YP_004243757.1| - 0.02 14.8 0.2 0.09 12.7 0.0 1.9 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Cep57_MT_bd PF06657.8 gi|325967565|ref|YP_004243757.1| - 0.047 13.6 0.6 0.16 11.9 0.1 2.0 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Pterin_4a PF01329.14 gi|325967566|ref|YP_004243758.1| - 8.4e-26 89.5 0.1 9.1e-26 89.4 0.1 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Glycos_transf_2 PF00535.21 gi|325967567|ref|YP_004243759.1| - 1.1e-16 60.9 0.5 1.5e-16 60.5 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|325967567|ref|YP_004243759.1| - 0.00016 20.8 0.1 0.00026 20.1 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|325967567|ref|YP_004243759.1| - 0.036 13.8 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_hydro_1 PF00232.13 gi|325967568|ref|YP_004243760.1| - 1.2e-65 221.4 6.2 1.9e-58 197.7 1.5 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 PIN PF01850.16 gi|325967569|ref|YP_004243761.1| - 1.5e-06 28.4 0.1 2e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain DUF615 PF04751.9 gi|325967570|ref|YP_004243762.1| - 0.073 12.7 0.1 0.088 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF615) OrfB_Zn_ribbon PF07282.6 gi|325967571|ref|YP_004243763.1| - 8e-12 44.6 0.0 1.5e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|325967571|ref|YP_004243763.1| - 0.0036 17.0 0.2 0.0064 16.2 0.1 1.3 1 0 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.2 gi|325967571|ref|YP_004243763.1| - 0.021 14.6 0.3 0.034 13.9 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|325967571|ref|YP_004243763.1| - 0.026 14.2 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|325967571|ref|YP_004243763.1| - 0.034 13.8 0.8 0.058 13.1 0.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 YhfH PF14149.1 gi|325967571|ref|YP_004243763.1| - 0.14 11.9 2.2 0.48 10.2 1.2 2.0 1 1 1 2 2 2 0 YhfH-like protein TF_Zn_Ribbon PF08271.7 gi|325967571|ref|YP_004243763.1| - 0.43 9.9 2.3 1.6 8.1 1.6 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|325967571|ref|YP_004243763.1| - 1.3 8.3 3.3 14 5.0 2.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|325967571|ref|YP_004243763.1| - 2.6 7.6 4.4 24 4.5 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain NTP_transf_2 PF01909.18 gi|325967572|ref|YP_004243764.1| - 7.8e-08 32.5 0.9 9.6e-08 32.2 0.6 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|325967572|ref|YP_004243764.1| - 0.026 14.5 0.0 0.031 14.3 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase beta palm CbiQ PF02361.11 gi|325967573|ref|YP_004243765.1| - 0.16 11.5 5.6 0.21 11.1 3.9 1.1 1 0 0 1 1 1 0 Cobalt transport protein YtpI PF14007.1 gi|325967573|ref|YP_004243765.1| - 0.2 11.5 0.1 0.2 11.5 0.1 2.2 2 0 0 2 2 2 0 YtpI-like protein DUF4131 PF13567.1 gi|325967573|ref|YP_004243765.1| - 0.65 9.3 8.6 0.25 10.7 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2614 PF11023.3 gi|325967573|ref|YP_004243765.1| - 4 7.2 7.1 0.14 11.9 0.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2614) Cupin_2 PF07883.6 gi|325967575|ref|YP_004243767.1| - 9.9e-19 66.6 0.0 1.3e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|325967575|ref|YP_004243767.1| - 4.2e-12 45.9 0.0 5.4e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|325967575|ref|YP_004243767.1| - 2.3e-07 30.5 0.0 3e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Auxin_BP PF02041.11 gi|325967575|ref|YP_004243767.1| - 1.2e-06 28.0 0.1 3.5e-06 26.5 0.0 1.7 1 1 0 1 1 1 1 Auxin binding protein Cupin_1 PF00190.17 gi|325967575|ref|YP_004243767.1| - 1.3e-06 27.9 0.0 1.5e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.7 gi|325967575|ref|YP_004243767.1| - 0.0015 18.4 0.0 0.0018 18.2 0.0 1.0 1 0 0 1 1 1 1 Ectoine synthase GPI PF06560.6 gi|325967575|ref|YP_004243767.1| - 0.0018 17.3 0.1 0.0029 16.6 0.0 1.3 1 0 0 1 1 1 1 Glucose-6-phosphate isomerase (GPI) Cupin_7 PF12973.2 gi|325967575|ref|YP_004243767.1| - 0.021 14.6 0.0 0.039 13.7 0.0 1.5 1 1 0 1 1 1 0 ChrR Cupin-like domain JmjC PF02373.17 gi|325967575|ref|YP_004243767.1| - 0.11 12.7 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 JmjC domain, hydroxylase PaREP1 PF05942.6 gi|325967576|ref|YP_004243768.1| - 1.6e-25 89.1 2.6 2.2e-25 88.7 1.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family UPF0016 PF01169.14 gi|325967577|ref|YP_004243769.1| - 0.23 11.6 11.2 0.52 10.4 1.7 2.6 2 1 0 2 2 2 0 Uncharacterized protein family UPF0016 YbjM PF11045.3 gi|325967577|ref|YP_004243769.1| - 1 9.1 4.4 0.64 9.7 0.6 2.1 2 0 0 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae MNHE PF01899.11 gi|325967577|ref|YP_004243769.1| - 1.3 8.6 9.0 0.26 10.9 2.0 2.1 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit Nitro_FeMo-Co PF02579.12 gi|325967578|ref|YP_004243770.1| - 1.9e-17 63.0 0.0 2.3e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Band_7 PF01145.20 gi|325967580|ref|YP_004243772.1| - 9.1e-19 68.0 1.2 1.5e-18 67.3 0.8 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|325967580|ref|YP_004243772.1| - 7.5e-16 58.2 0.5 1.3e-15 57.5 0.3 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family FAA_hydrolase_N PF09298.6 gi|325967580|ref|YP_004243772.1| - 0.075 13.0 0.1 0.68 9.9 0.0 2.2 1 1 1 2 2 2 0 Fumarylacetoacetase N-terminal PilZ PF07238.9 gi|325967580|ref|YP_004243772.1| - 0.075 13.0 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 PilZ domain DUF2427 PF10348.4 gi|325967581|ref|YP_004243773.1| - 0.023 14.2 4.9 0.04 13.4 3.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) ABC2_membrane_4 PF12730.2 gi|325967581|ref|YP_004243773.1| - 0.064 12.4 16.3 0.058 12.5 5.4 2.1 2 0 0 2 2 2 0 ABC-2 family transporter protein DPM3 PF08285.6 gi|325967581|ref|YP_004243773.1| - 0.75 9.6 6.5 0.047 13.5 0.9 1.6 2 1 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) YwiC PF14256.1 gi|325967581|ref|YP_004243773.1| - 3.6 7.6 10.4 7.4 6.6 6.5 1.9 1 1 0 1 1 1 0 YwiC-like protein Thioredoxin_3 PF13192.1 gi|325967582|ref|YP_004243774.1| - 6.1e-05 22.7 0.1 0.00014 21.6 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin domain AA_permease_2 PF13520.1 gi|325967583|ref|YP_004243775.1| - 9.2e-33 113.4 54.3 9.2e-33 113.4 37.6 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|325967583|ref|YP_004243775.1| - 1.5e-32 112.6 42.8 1.5e-32 112.6 29.7 2.1 1 1 1 2 2 2 1 Amino acid permease Spc7 PF08317.6 gi|325967585|ref|YP_004243777.1| - 0.05 12.2 0.0 0.082 11.5 0.0 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein GTPase_Cys_C PF12631.2 gi|325967585|ref|YP_004243777.1| - 0.093 13.1 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Endonuclease_5 PF04493.9 gi|325967586|ref|YP_004243778.1| - 8.7e-44 149.3 0.0 1.1e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V ThiI PF02568.9 gi|325967587|ref|YP_004243779.1| - 6.1e-55 185.7 0.0 9.8e-55 185.0 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|325967587|ref|YP_004243779.1| - 4.4e-19 68.7 1.6 5.2e-19 68.5 0.3 1.7 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.15 gi|325967587|ref|YP_004243779.1| - 4.4e-09 36.6 0.0 1.2e-08 35.3 0.0 1.7 1 0 0 1 1 1 1 Rhodanese-like domain QueC PF06508.8 gi|325967587|ref|YP_004243779.1| - 0.005 16.1 0.0 1 8.6 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Proteasome PF00227.21 gi|325967588|ref|YP_004243780.1| - 1.2e-49 168.1 0.2 1.4e-49 167.9 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF1131 PF06572.7 gi|325967589|ref|YP_004243781.1| - 0.0028 17.1 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1131) OppC_N PF12911.2 gi|325967590|ref|YP_004243782.1| - 0.067 12.5 0.0 0.067 12.5 0.0 4.1 6 0 0 6 6 6 0 N-terminal TM domain of oligopeptide transport permease C OrfB_Zn_ribbon PF07282.6 gi|325967591|ref|YP_004243783.1| - 0.0021 17.6 0.1 1.2 8.8 0.0 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain Glycos_transf_2 PF00535.21 gi|325967593|ref|YP_004243785.1| - 1.2e-12 47.7 3.0 1.5e-12 47.5 0.6 2.2 2 1 1 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325967593|ref|YP_004243785.1| - 5.1e-07 29.7 0.0 6.7e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Rhamno_transf PF11316.3 gi|325967593|ref|YP_004243785.1| - 0.074 12.2 0.3 0.17 11.0 0.1 1.6 1 1 1 2 2 2 0 Putative rhamnosyl transferase Glycos_transf_1 PF00534.15 gi|325967594|ref|YP_004243786.1| - 1.8e-20 73.0 0.1 3e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325967594|ref|YP_004243786.1| - 5.5e-14 52.4 0.0 4.1e-13 49.6 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325967594|ref|YP_004243786.1| - 0.011 15.9 0.0 0.022 15.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325967594|ref|YP_004243786.1| - 0.054 13.2 0.1 6.4 6.4 0.0 2.7 3 0 0 3 3 3 0 Glycosyltransferase Family 4 Methyltransf_21 PF05050.7 gi|325967595|ref|YP_004243787.1| - 3.8e-21 75.7 0.1 5.7e-21 75.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|325967595|ref|YP_004243787.1| - 9.7e-06 26.1 0.0 1.7e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|325967595|ref|YP_004243787.1| - 1.8e-05 24.4 0.2 2.6e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.6 gi|325967595|ref|YP_004243787.1| - 0.00025 20.2 1.4 0.00039 19.5 1.0 1.3 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein Cons_hypoth95 PF03602.10 gi|325967595|ref|YP_004243787.1| - 0.096 12.0 0.1 0.53 9.6 0.0 1.9 1 1 1 2 2 2 0 Conserved hypothetical protein 95 DUF2079 PF09852.4 gi|325967596|ref|YP_004243788.1| - 3.6e-30 105.0 46.7 1.3e-28 99.9 32.4 2.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2079) Glycos_transf_1 PF00534.15 gi|325967599|ref|YP_004243791.1| - 8.1e-16 57.9 0.0 1.4e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325967599|ref|YP_004243791.1| - 1.6e-06 28.3 0.0 3.3e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325967599|ref|YP_004243791.1| - 8e-05 22.4 0.0 0.00018 21.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|325967599|ref|YP_004243791.1| - 0.00026 21.1 0.0 0.00047 20.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PaREP1 PF05942.6 gi|325967600|ref|YP_004243792.1| - 1.5e-34 118.3 1.5 1.5e-34 118.3 1.1 1.8 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Reo_sigmaC PF04582.7 gi|325967601|ref|YP_004243793.1| - 0.0049 16.1 0.1 0.0058 15.8 0.0 1.1 1 0 0 1 1 1 1 Reovirus sigma C capsid protein DUF2730 PF10805.3 gi|325967601|ref|YP_004243793.1| - 0.005 16.5 0.0 0.0072 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) Surfac_D-trimer PF09006.6 gi|325967601|ref|YP_004243793.1| - 0.008 15.8 0.0 0.22 11.2 0.0 2.2 2 0 0 2 2 2 1 Lung surfactant protein D coiled-coil trimerisation PEARLI-4 PF05278.7 gi|325967601|ref|YP_004243793.1| - 0.033 13.5 0.0 0.088 12.1 0.0 1.4 1 1 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) FlaC_arch PF05377.6 gi|325967601|ref|YP_004243793.1| - 0.034 14.0 0.0 0.18 11.6 0.0 2.1 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) Nup54 PF13874.1 gi|325967601|ref|YP_004243793.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Vps5 PF09325.5 gi|325967601|ref|YP_004243793.1| - 0.14 11.4 0.0 4.1 6.5 0.0 1.9 1 1 1 2 2 2 0 Vps5 C terminal like DUF1626 PF07788.6 gi|325967602|ref|YP_004243794.1| - 1.7e-28 98.2 0.7 3.1e-28 97.3 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|325967602|ref|YP_004243794.1| - 1.9e-05 24.3 21.4 0.0003 20.5 14.8 2.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) APG6 PF04111.7 gi|325967602|ref|YP_004243794.1| - 0.00011 21.3 19.0 0.00017 20.7 13.2 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 DUF972 PF06156.8 gi|325967602|ref|YP_004243794.1| - 0.00069 19.9 15.0 0.0033 17.7 2.1 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF972) GAS PF13851.1 gi|325967602|ref|YP_004243794.1| - 0.0017 17.6 20.2 0.0026 17.0 14.0 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding Taxilin PF09728.4 gi|325967602|ref|YP_004243794.1| - 0.0028 16.7 14.2 0.0043 16.1 9.8 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein Cauli_AT PF03233.8 gi|325967602|ref|YP_004243794.1| - 0.0031 17.2 5.8 0.0064 16.2 1.1 2.2 1 1 1 2 2 2 1 Aphid transmission protein Transposase_22 PF02994.9 gi|325967602|ref|YP_004243794.1| - 0.0037 15.8 13.2 0.007 14.9 8.8 1.7 1 1 1 2 2 2 2 L1 transposable element Myosin_tail_1 PF01576.14 gi|325967602|ref|YP_004243794.1| - 0.007 14.1 15.9 0.0089 13.8 11.0 1.0 1 0 0 1 1 1 1 Myosin tail NPV_P10 PF05531.7 gi|325967602|ref|YP_004243794.1| - 0.013 15.7 0.1 28 5.0 0.0 3.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.1 gi|325967602|ref|YP_004243794.1| - 0.013 15.7 9.8 0.42 10.9 2.2 3.1 1 1 1 2 2 2 0 Snapin/Pallidin EzrA PF06160.7 gi|325967602|ref|YP_004243794.1| - 0.018 13.2 14.2 0.06 11.5 1.1 2.4 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA OmpH PF03938.9 gi|325967602|ref|YP_004243794.1| - 0.023 14.6 11.6 0.059 13.3 8.1 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) RmuC PF02646.11 gi|325967602|ref|YP_004243794.1| - 0.026 13.3 6.4 0.039 12.8 2.3 2.4 1 1 2 3 3 3 0 RmuC family Prominin PF05478.6 gi|325967602|ref|YP_004243794.1| - 0.028 11.9 0.4 0.042 11.3 0.3 1.2 1 0 0 1 1 1 0 Prominin DUF948 PF06103.6 gi|325967602|ref|YP_004243794.1| - 0.029 14.2 2.2 0.9 9.4 0.6 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|325967602|ref|YP_004243794.1| - 0.034 13.9 2.0 8.1 6.2 0.0 2.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin PF00804.20 gi|325967602|ref|YP_004243794.1| - 0.039 14.1 7.3 10 6.3 5.1 2.5 1 1 0 1 1 1 0 Syntaxin ERM PF00769.14 gi|325967602|ref|YP_004243794.1| - 0.059 12.8 20.3 0.094 12.2 14.1 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family ACT_5 PF13710.1 gi|325967602|ref|YP_004243794.1| - 0.073 12.8 0.1 0.39 10.5 0.0 2.2 2 0 0 2 2 1 0 ACT domain Allexi_40kDa PF05549.6 gi|325967602|ref|YP_004243794.1| - 0.077 12.2 4.0 0.85 8.8 0.2 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein Dor1 PF04124.7 gi|325967602|ref|YP_004243794.1| - 0.096 11.1 7.3 0.23 9.8 4.9 1.7 1 1 0 1 1 1 0 Dor1-like family CCDC155 PF14662.1 gi|325967602|ref|YP_004243794.1| - 0.12 11.9 14.6 0.21 11.1 10.1 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 DUF148 PF02520.12 gi|325967602|ref|YP_004243794.1| - 0.19 11.5 16.8 0.14 11.9 5.8 2.8 1 1 2 3 3 2 0 Domain of unknown function DUF148 DUF3632 PF12311.3 gi|325967602|ref|YP_004243794.1| - 0.19 11.5 14.9 2.2 8.0 6.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3632) DUF2422 PF10337.4 gi|325967602|ref|YP_004243794.1| - 0.36 9.5 2.0 2 7.1 1.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2422) Laminin_I PF06008.9 gi|325967602|ref|YP_004243794.1| - 0.37 10.0 15.9 1.1 8.5 11.1 1.6 1 1 0 1 1 1 0 Laminin Domain I BRE1 PF08647.6 gi|325967602|ref|YP_004243794.1| - 0.4 10.6 15.7 3.2 7.8 8.6 2.2 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase DUF3461 PF11944.3 gi|325967602|ref|YP_004243794.1| - 0.77 9.6 7.0 7.5 6.4 0.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3461) CENP-Q PF13094.1 gi|325967602|ref|YP_004243794.1| - 0.81 9.6 8.9 1.1 9.2 6.2 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF1664 PF07889.7 gi|325967602|ref|YP_004243794.1| - 0.81 9.4 5.2 4.4 7.1 1.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) IncA PF04156.9 gi|325967602|ref|YP_004243794.1| - 1.2 8.6 20.5 3.6 7.1 4.7 2.1 1 1 1 2 2 2 0 IncA protein Uso1_p115_C PF04871.8 gi|325967602|ref|YP_004243794.1| - 2.1 8.2 16.6 3.3 7.6 4.7 2.8 1 1 2 3 3 3 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF2019 PF09450.5 gi|325967602|ref|YP_004243794.1| - 2.1 8.2 4.5 28 4.6 0.1 3.7 2 1 3 5 5 4 0 Domain of unknown function (DUF2019) TMF_DNA_bd PF12329.3 gi|325967602|ref|YP_004243794.1| - 2.5 7.9 19.3 3.4 7.5 8.3 2.9 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding KxDL PF10241.4 gi|325967602|ref|YP_004243794.1| - 2.7 7.9 7.2 1.8 8.5 1.1 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein COG2 PF06148.6 gi|325967602|ref|YP_004243794.1| - 3 7.7 9.1 6 6.7 1.4 3.0 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Prefoldin_2 PF01920.15 gi|325967602|ref|YP_004243794.1| - 3.2 7.5 20.9 4.3 7.1 2.2 3.2 1 1 2 3 3 3 0 Prefoldin subunit zf-C4H2 PF10146.4 gi|325967602|ref|YP_004243794.1| - 3.9 7.4 10.9 7.5 6.5 7.6 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein Mod_r PF07200.8 gi|325967602|ref|YP_004243794.1| - 5 7.0 15.7 11 5.9 10.9 1.5 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DegS PF05384.6 gi|325967602|ref|YP_004243794.1| - 5.6 6.1 13.9 29 3.8 7.2 2.9 1 1 1 2 2 2 0 Sensor protein DegS Laminin_II PF06009.7 gi|325967602|ref|YP_004243794.1| - 6 6.6 8.6 16 5.2 3.6 2.3 1 1 1 2 2 2 0 Laminin Domain II Peptidase_S46 PF10459.4 gi|325967602|ref|YP_004243794.1| - 6.7 4.9 11.0 9 4.5 7.6 1.1 1 0 0 1 1 1 0 Peptidase S46 UPF0449 PF15136.1 gi|325967602|ref|YP_004243794.1| - 7.2 6.8 10.1 2e+02 2.2 7.0 2.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0449 DUF2856 PF11043.3 gi|325967602|ref|YP_004243794.1| - 7.5 6.7 8.6 21 5.3 1.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2856) RasGAP_C PF03836.10 gi|325967602|ref|YP_004243794.1| - 7.8 6.1 10.6 13 5.5 1.7 2.5 1 1 1 2 2 2 0 RasGAP C-terminus Seryl_tRNA_N PF02403.17 gi|325967602|ref|YP_004243794.1| - 7.8 6.5 17.8 6.7 6.7 5.5 2.3 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain IncA PF04156.9 gi|325967603|ref|YP_004243795.1| - 2e-06 27.5 0.7 2.7e-06 27.1 0.5 1.2 1 0 0 1 1 1 1 IncA protein AgrB PF04647.10 gi|325967603|ref|YP_004243795.1| - 0.00068 18.7 1.9 0.00089 18.3 1.3 1.1 1 0 0 1 1 1 1 Accessory gene regulator B DUF4131 PF13567.1 gi|325967603|ref|YP_004243795.1| - 0.0018 17.7 0.1 0.0018 17.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF1469 PF07332.6 gi|325967603|ref|YP_004243795.1| - 0.0031 17.2 0.3 0.004 16.8 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) Cytochrom_B_N PF00033.14 gi|325967603|ref|YP_004243795.1| - 0.0077 15.5 0.1 0.0091 15.3 0.0 1.1 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB DUF973 PF06157.6 gi|325967603|ref|YP_004243795.1| - 0.019 13.9 0.5 0.018 13.9 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) H_PPase PF03030.11 gi|325967603|ref|YP_004243795.1| - 0.019 13.2 0.1 0.021 13.0 0.1 1.0 1 0 0 1 1 1 0 Inorganic H+ pyrophosphatase DUF2207 PF09972.4 gi|325967603|ref|YP_004243795.1| - 0.026 13.1 2.4 0.031 12.8 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HAMP PF00672.20 gi|325967603|ref|YP_004243795.1| - 0.048 13.8 0.7 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 HAMP domain Cytochrom_B_C PF00032.12 gi|325967603|ref|YP_004243795.1| - 0.087 13.0 1.4 0.11 12.7 1.0 1.1 1 0 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD DUF4307 PF14155.1 gi|325967603|ref|YP_004243795.1| - 0.14 11.9 0.9 1.2 8.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) ACCA PF03255.9 gi|325967603|ref|YP_004243795.1| - 0.16 11.4 0.9 0.2 11.2 0.7 1.1 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit PIG-P PF08510.7 gi|325967603|ref|YP_004243795.1| - 0.16 11.5 1.1 0.74 9.4 0.0 1.9 1 1 1 2 2 2 0 PIG-P DUF4132 PF13569.1 gi|325967603|ref|YP_004243795.1| - 0.28 10.6 2.9 0.34 10.4 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4132) YqhR PF11085.3 gi|325967603|ref|YP_004243795.1| - 0.83 9.1 5.8 0.93 9.0 3.8 1.3 1 1 0 1 1 1 0 Conserved membrane protein YqhR DUF948 PF06103.6 gi|325967603|ref|YP_004243795.1| - 6.2 6.7 6.2 2.2 8.1 0.0 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Epimerase PF01370.16 gi|325967604|ref|YP_004243796.1| - 1.4e-65 221.0 0.0 1.7e-65 220.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|325967604|ref|YP_004243796.1| - 4.4e-27 94.7 0.0 5.2e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|325967604|ref|YP_004243796.1| - 6.3e-16 58.0 0.1 3e-14 52.5 0.0 2.1 1 1 1 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|325967604|ref|YP_004243796.1| - 1.3e-15 56.9 0.0 1.9e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|325967604|ref|YP_004243796.1| - 2.8e-13 49.4 0.1 6.9e-12 44.8 0.1 2.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|325967604|ref|YP_004243796.1| - 3.9e-08 33.5 0.0 5.3e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|325967604|ref|YP_004243796.1| - 0.003 17.4 1.2 0.077 12.9 0.0 2.8 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|325967604|ref|YP_004243796.1| - 0.0061 15.8 0.0 0.053 12.7 0.0 2.4 2 1 1 3 3 3 1 NmrA-like family NTP_transferase PF00483.18 gi|325967605|ref|YP_004243797.1| - 6.2e-44 150.1 0.0 7.4e-44 149.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|325967605|ref|YP_004243797.1| - 1.1e-10 41.8 0.0 1.3e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Bactofilin PF04519.8 gi|325967605|ref|YP_004243797.1| - 8.8e-05 22.4 2.3 0.00016 21.6 1.6 1.4 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|325967605|ref|YP_004243797.1| - 0.00042 19.6 10.0 0.0084 15.5 0.9 4.8 4 0 0 4 4 4 1 Bacterial transferase hexapeptide (six repeats) Glycos_transf_2 PF00535.21 gi|325967605|ref|YP_004243797.1| - 0.058 13.0 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 GRDB PF07355.7 gi|325967605|ref|YP_004243797.1| - 0.074 11.9 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) CTP_transf_3 PF02348.14 gi|325967605|ref|YP_004243797.1| - 0.094 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Polysacc_synt PF01943.12 gi|325967606|ref|YP_004243798.1| - 1.9e-07 30.6 34.4 1.9e-07 30.6 23.9 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|325967606|ref|YP_004243798.1| - 0.0025 17.3 34.3 0.0025 17.3 23.8 2.7 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Peptidase_M50 PF02163.17 gi|325967606|ref|YP_004243798.1| - 0.35 9.7 6.7 16 4.4 0.0 3.0 2 1 0 2 2 2 0 Peptidase family M50 Thy1 PF02511.10 gi|325967607|ref|YP_004243799.1| - 6.9e-38 129.9 0.0 9.1e-38 129.5 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein ABC_tran PF00005.22 gi|325967608|ref|YP_004243800.1| - 3.7e-33 114.7 0.0 4.9e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|325967608|ref|YP_004243800.1| - 6.5e-21 74.4 0.2 1.4e-20 73.3 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|325967608|ref|YP_004243800.1| - 1e-10 42.1 0.1 1.5e-06 28.3 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|325967608|ref|YP_004243800.1| - 5.9e-05 23.2 0.1 0.00015 21.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325967608|ref|YP_004243800.1| - 8.2e-05 22.6 0.0 0.00024 21.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|325967608|ref|YP_004243800.1| - 0.00079 19.3 0.2 0.016 15.1 0.0 2.7 1 1 1 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|325967608|ref|YP_004243800.1| - 0.0025 16.3 0.0 0.8 8.0 0.0 2.0 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|325967608|ref|YP_004243800.1| - 0.0049 16.3 0.0 0.0085 15.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|325967608|ref|YP_004243800.1| - 0.0054 15.9 0.2 0.065 12.4 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|325967608|ref|YP_004243800.1| - 0.0057 16.0 0.4 0.037 13.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|325967608|ref|YP_004243800.1| - 0.0079 15.9 0.1 0.16 11.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|325967608|ref|YP_004243800.1| - 0.018 15.3 0.0 0.037 14.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|325967608|ref|YP_004243800.1| - 0.064 14.0 0.0 0.13 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|325967608|ref|YP_004243800.1| - 0.075 12.4 0.1 0.48 9.8 0.0 1.8 1 1 1 2 2 2 0 AAA-like domain AAA_15 PF13175.1 gi|325967608|ref|YP_004243800.1| - 0.08 11.9 0.0 7 5.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|325967609|ref|YP_004243801.1| - 1.7e-26 93.1 0.0 2.4e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|325967609|ref|YP_004243801.1| - 2.8e-18 65.9 0.0 5e-18 65.2 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|325967609|ref|YP_004243801.1| - 4.5e-12 46.5 1.7 2.3e-09 37.6 1.2 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|325967609|ref|YP_004243801.1| - 5.8e-06 25.6 0.5 2.8e-05 23.4 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|325967609|ref|YP_004243801.1| - 5.9e-06 25.7 0.1 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|325967609|ref|YP_004243801.1| - 1.3e-05 25.3 0.1 4.1e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325967609|ref|YP_004243801.1| - 0.00061 20.6 0.0 0.00096 19.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|325967609|ref|YP_004243801.1| - 0.00061 20.1 0.1 0.0014 19.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|325967609|ref|YP_004243801.1| - 0.0011 19.3 0.1 0.0059 16.9 0.1 2.0 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|325967609|ref|YP_004243801.1| - 0.0016 17.6 0.1 0.064 12.4 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|325967609|ref|YP_004243801.1| - 0.0019 17.3 3.1 0.21 10.5 0.4 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|325967609|ref|YP_004243801.1| - 0.0021 18.0 0.0 0.0045 16.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|325967609|ref|YP_004243801.1| - 0.0076 15.6 0.1 0.053 12.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|325967609|ref|YP_004243801.1| - 0.0085 15.7 0.1 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Cytidylate_kin2 PF13189.1 gi|325967609|ref|YP_004243801.1| - 0.009 15.9 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylate kinase-like family PRK PF00485.13 gi|325967609|ref|YP_004243801.1| - 0.017 14.6 0.0 0.033 13.7 0.0 1.6 2 0 0 2 2 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.18 gi|325967609|ref|YP_004243801.1| - 0.019 14.8 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|325967609|ref|YP_004243801.1| - 0.023 14.1 0.6 0.21 10.9 0.1 2.1 2 1 0 2 2 2 0 AAA-like domain NB-ARC PF00931.17 gi|325967609|ref|YP_004243801.1| - 0.041 12.7 0.1 0.076 11.8 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|325967609|ref|YP_004243801.1| - 0.055 12.5 0.5 0.3 10.1 0.0 2.2 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.1 gi|325967609|ref|YP_004243801.1| - 0.074 12.9 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|325967609|ref|YP_004243801.1| - 0.11 11.2 0.1 0.18 10.5 0.1 1.4 1 0 0 1 1 1 0 ArgK protein NACHT PF05729.7 gi|325967609|ref|YP_004243801.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|325967609|ref|YP_004243801.1| - 0.13 11.6 0.6 3.6 6.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.13 gi|325967609|ref|YP_004243801.1| - 0.15 11.5 0.1 0.29 10.6 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_13 PF13166.1 gi|325967609|ref|YP_004243801.1| - 0.29 9.5 0.5 6.2 5.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|325967609|ref|YP_004243801.1| - 0.36 9.3 1.7 0.76 8.2 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.17 gi|325967610|ref|YP_004243802.1| - 6.6e-27 94.2 19.0 6.6e-27 94.2 13.2 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|325967610|ref|YP_004243802.1| - 0.034 13.5 0.8 0.034 13.5 0.5 3.4 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|325967611|ref|YP_004243803.1| - 3.6e-38 130.9 14.4 3.6e-38 130.9 10.0 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component AMP-binding PF00501.23 gi|325967612|ref|YP_004243804.1| - 4.8e-94 315.0 0.0 5.9e-94 314.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325967612|ref|YP_004243804.1| - 6.5e-24 84.6 1.5 3.6e-23 82.2 0.2 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain TP_methylase PF00590.15 gi|325967612|ref|YP_004243804.1| - 0.03 14.0 0.0 0.073 12.7 0.0 1.6 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases ADPrib_exo_Tox PF03496.9 gi|325967612|ref|YP_004243804.1| - 0.11 11.6 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme DUF2240 PF09999.4 gi|325967613|ref|YP_004243805.1| - 0.051 13.0 0.2 0.58 9.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2240) TusA PF01206.12 gi|325967614|ref|YP_004243806.1| - 5e-08 32.4 0.0 5.6e-08 32.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Peptidase_S24 PF00717.18 gi|325967614|ref|YP_004243806.1| - 0.0017 17.9 0.0 0.0019 17.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_M1 PF01433.15 gi|325967615|ref|YP_004243807.1| - 1.7e-63 215.0 0.0 2.7e-63 214.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M1 HEAT_2 PF13646.1 gi|325967615|ref|YP_004243807.1| - 7.7e-33 112.6 1.8 3.9e-13 49.4 0.0 4.8 2 1 3 5 5 5 4 HEAT repeats Peptidase_MA_2 PF13485.1 gi|325967615|ref|YP_004243807.1| - 5.6e-17 61.9 0.9 2.1e-16 60.1 0.6 2.0 1 0 0 1 1 1 1 Peptidase MA superfamily HEAT PF02985.17 gi|325967615|ref|YP_004243807.1| - 7.6e-12 44.2 0.4 0.23 11.6 0.0 5.9 5 0 0 5 5 5 3 HEAT repeat HEAT_PBS PF03130.11 gi|325967615|ref|YP_004243807.1| - 1.9e-10 40.1 14.4 0.00019 21.5 0.4 6.8 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|325967615|ref|YP_004243807.1| - 2.5e-05 24.6 4.8 0.0022 18.4 0.3 4.7 4 1 2 6 6 6 1 HEAT-like repeat Vitellogenin_N PF01347.17 gi|325967615|ref|YP_004243807.1| - 0.00042 18.7 0.3 0.0047 15.2 0.1 2.1 2 0 0 2 2 2 1 Lipoprotein amino terminal region DUF4200 PF13863.1 gi|325967615|ref|YP_004243807.1| - 0.09 12.7 2.2 0.16 11.9 1.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) ERAP1_C PF11838.3 gi|325967615|ref|YP_004243807.1| - 0.26 10.4 2.0 0.2 10.8 0.1 1.8 2 0 0 2 2 2 0 ERAP1-like C-terminal domain RIX1 PF08167.7 gi|325967615|ref|YP_004243807.1| - 0.27 10.8 0.1 2.9 7.5 0.0 2.5 2 1 1 3 3 3 0 rRNA processing/ribosome biogenesis EntA_Immun PF08951.5 gi|325967615|ref|YP_004243807.1| - 0.52 10.5 2.2 5.6 7.1 0.1 3.3 4 0 0 4 4 4 0 Enterocin A Immunity ALF PF03752.8 gi|325967615|ref|YP_004243807.1| - 2.1 8.2 6.5 3.8 7.4 1.4 3.1 2 1 1 3 3 3 0 Short repeats of unknown function MTS PF05175.9 gi|325967616|ref|YP_004243808.1| - 4.4e-43 146.5 0.0 5.1e-43 146.3 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|325967616|ref|YP_004243808.1| - 1.2e-15 57.3 0.0 1.7e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|325967616|ref|YP_004243808.1| - 1.7e-13 50.3 0.3 2e-13 50.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_26 PF13659.1 gi|325967616|ref|YP_004243808.1| - 1.2e-12 47.8 0.0 1.8e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325967616|ref|YP_004243808.1| - 1.7e-09 38.2 0.0 2.6e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|325967616|ref|YP_004243808.1| - 3.8e-07 29.9 0.1 4.8e-07 29.5 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|325967616|ref|YP_004243808.1| - 1.6e-06 27.7 0.1 2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.7 gi|325967616|ref|YP_004243808.1| - 5.5e-06 26.7 0.0 9e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325967616|ref|YP_004243808.1| - 3.2e-05 23.6 0.0 6.9e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|325967616|ref|YP_004243808.1| - 0.00026 21.4 0.0 0.00047 20.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|325967616|ref|YP_004243808.1| - 0.00038 20.7 0.0 0.00086 19.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.6 gi|325967616|ref|YP_004243808.1| - 0.00078 18.2 0.1 0.0019 16.9 0.0 1.5 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.14 gi|325967616|ref|YP_004243808.1| - 0.0016 17.9 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.6 gi|325967616|ref|YP_004243808.1| - 0.0077 15.2 0.1 0.012 14.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_32 PF13679.1 gi|325967616|ref|YP_004243808.1| - 0.029 14.0 0.0 0.041 13.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|325967616|ref|YP_004243808.1| - 0.059 12.4 0.2 0.092 11.8 0.1 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family TRM PF02005.11 gi|325967616|ref|YP_004243808.1| - 0.073 11.9 0.1 0.091 11.6 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_4 PF02390.12 gi|325967616|ref|YP_004243808.1| - 0.085 11.8 0.1 0.17 10.9 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase EamA PF00892.15 gi|325967617|ref|YP_004243809.1| - 4.2e-28 97.9 37.0 3.9e-15 56.0 7.8 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|325967617|ref|YP_004243809.1| - 2.2e-05 24.6 6.7 2.2e-05 24.6 4.7 3.0 2 2 1 3 3 3 2 Multidrug resistance efflux transporter KOW PF00467.24 gi|325967618|ref|YP_004243810.1| - 1.2e-07 31.1 1.3 1.2e-07 31.1 0.9 2.2 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.15 gi|325967619|ref|YP_004243811.1| - 5.2e-29 99.7 0.0 2.1e-28 97.7 0.0 1.9 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.7 gi|325967619|ref|YP_004243811.1| - 5e-13 48.6 5.1 8e-13 48.0 3.5 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|325967619|ref|YP_004243811.1| - 2.2e-08 33.4 0.2 2.2e-08 33.4 0.1 2.2 3 0 0 3 3 3 1 S4 domain KOW PF00467.24 gi|325967619|ref|YP_004243811.1| - 0.013 15.2 0.2 0.044 13.5 0.1 1.9 1 0 0 1 1 1 0 KOW motif SUFU PF05076.8 gi|325967619|ref|YP_004243811.1| - 0.04 13.4 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 Suppressor of fused protein (SUFU) MAF_flag10 PF01973.13 gi|325967620|ref|YP_004243812.1| - 4.7e-09 35.9 0.0 7.3e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 SHMT PF00464.14 gi|325967621|ref|YP_004243813.1| - 2.4e-76 256.6 0.0 3.2e-76 256.2 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|325967621|ref|YP_004243813.1| - 4.5e-10 39.1 0.0 6.4e-10 38.6 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|325967621|ref|YP_004243813.1| - 5.8e-10 38.6 0.0 1.2e-09 37.6 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|325967621|ref|YP_004243813.1| - 0.00014 20.7 0.1 0.00022 20.1 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|325967621|ref|YP_004243813.1| - 0.01 14.8 0.0 0.15 11.0 0.0 2.0 1 1 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|325967621|ref|YP_004243813.1| - 0.013 13.8 0.4 0.19 10.0 0.0 2.1 1 1 1 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|325967621|ref|YP_004243813.1| - 0.023 13.4 0.0 0.056 12.1 0.0 1.7 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase ProRS-C_2 PF09181.5 gi|325967621|ref|YP_004243813.1| - 0.071 13.0 0.1 0.22 11.4 0.0 1.8 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal DNA_ligase_A_M PF01068.16 gi|325967622|ref|YP_004243814.1| - 7.5e-63 211.5 0.1 1.3e-62 210.7 0.1 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|325967622|ref|YP_004243814.1| - 4.5e-49 166.6 0.0 1.2e-47 162.0 0.0 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|325967622|ref|YP_004243814.1| - 2.4e-22 79.1 0.0 1.2e-21 76.8 0.0 2.2 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|325967622|ref|YP_004243814.1| - 0.023 14.3 1.4 0.058 13.0 0.0 2.5 3 0 0 3 3 3 0 DNA ligase OB-like domain PfkB PF00294.19 gi|325967624|ref|YP_004243816.1| - 2.8e-53 181.0 0.2 3.4e-53 180.7 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|325967624|ref|YP_004243816.1| - 0.0061 15.7 0.0 0.0091 15.2 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase NTP_transferase PF00483.18 gi|325967626|ref|YP_004243818.1| - 2.1e-21 76.3 0.0 2.5e-21 76.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|325967626|ref|YP_004243818.1| - 1.5e-05 25.1 0.0 1.7e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transf_4 PF13562.1 gi|325967626|ref|YP_004243818.1| - 0.007 16.0 0.1 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 Sugar nucleotidyl transferase IspD PF01128.14 gi|325967626|ref|YP_004243818.1| - 0.14 11.6 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SHOCT PF09851.4 gi|325967627|ref|YP_004243819.1| - 0.0042 16.5 11.7 0.34 10.4 2.2 3.6 3 0 0 3 3 3 2 Short C-terminal domain GvpG PF05120.7 gi|325967627|ref|YP_004243819.1| - 0.0078 15.9 2.1 0.73 9.6 0.0 2.7 2 0 0 2 2 2 1 Gas vesicle protein G DUF2927 PF11150.3 gi|325967627|ref|YP_004243819.1| - 0.011 15.3 2.0 0.015 15.0 1.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2927) Phage_int_SAM_2 PF12834.2 gi|325967627|ref|YP_004243819.1| - 0.012 15.9 0.8 0.05 13.9 0.2 2.2 1 1 1 2 2 2 0 Phage integrase, N-terminal Spectrin PF00435.16 gi|325967627|ref|YP_004243819.1| - 0.014 15.6 9.7 0.073 13.3 0.9 2.4 1 1 1 2 2 2 0 Spectrin repeat NPV_P10 PF05531.7 gi|325967627|ref|YP_004243819.1| - 0.023 14.9 0.7 0.023 14.9 0.5 3.2 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein Cep57_MT_bd PF06657.8 gi|325967627|ref|YP_004243819.1| - 0.039 13.9 2.3 4.4 7.3 0.3 2.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF365 PF04033.7 gi|325967627|ref|YP_004243819.1| - 0.1 12.5 3.3 0.057 13.4 0.7 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF365) THOC7 PF05615.8 gi|325967627|ref|YP_004243819.1| - 0.11 12.7 15.8 1.9 8.7 0.2 3.4 1 1 1 2 2 2 0 Tho complex subunit 7 FliD_C PF07195.7 gi|325967627|ref|YP_004243819.1| - 0.11 11.7 10.4 0.081 12.2 0.7 2.5 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Tmemb_cc2 PF10267.4 gi|325967627|ref|YP_004243819.1| - 0.17 10.4 16.6 0.016 13.8 7.4 1.9 1 1 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein TipAS PF07739.8 gi|325967627|ref|YP_004243819.1| - 0.17 12.2 0.2 0.17 12.2 0.1 2.2 1 1 1 2 2 2 0 TipAS antibiotic-recognition domain DUF883 PF05957.8 gi|325967627|ref|YP_004243819.1| - 0.24 11.8 4.3 1.2 9.6 0.1 3.4 2 1 1 4 4 4 0 Bacterial protein of unknown function (DUF883) Baculo_PEP_C PF04513.7 gi|325967627|ref|YP_004243819.1| - 0.25 11.1 3.4 1.1 9.0 0.1 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus P4Ha_N PF08336.6 gi|325967627|ref|YP_004243819.1| - 0.34 10.7 6.2 2.4 7.9 0.1 3.0 2 1 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region WXG100 PF06013.7 gi|325967627|ref|YP_004243819.1| - 0.66 10.0 6.8 2.5 8.1 0.1 3.0 3 0 0 3 3 3 0 Proteins of 100 residues with WXG Effector_1 PF04518.7 gi|325967627|ref|YP_004243819.1| - 1.9 7.3 14.3 0.84 8.5 2.2 2.1 1 1 1 2 2 2 0 Effector from type III secretion system ApoO PF09769.4 gi|325967627|ref|YP_004243819.1| - 1.9 8.1 6.5 5.7 6.6 0.1 2.3 2 0 0 2 2 2 0 Apolipoprotein O Z1 PF10593.4 gi|325967627|ref|YP_004243819.1| - 2.3 7.3 8.3 0.46 9.6 2.0 2.0 1 1 1 2 2 2 0 Z1 domain Laminin_II PF06009.7 gi|325967627|ref|YP_004243819.1| - 2.4 7.8 11.1 0.98 9.1 0.6 2.8 2 1 1 3 3 3 0 Laminin Domain II Uds1 PF15456.1 gi|325967627|ref|YP_004243819.1| - 3 7.8 7.4 0.58 10.1 2.0 2.1 1 1 1 2 2 2 0 Up-regulated During Septation Syntaxin_2 PF14523.1 gi|325967627|ref|YP_004243819.1| - 4.3 7.4 16.4 19 5.3 3.8 3.3 1 1 1 2 2 2 0 Syntaxin-like protein DUF4200 PF13863.1 gi|325967627|ref|YP_004243819.1| - 4.5 7.2 16.2 0.12 12.2 5.1 2.6 1 1 0 2 2 2 0 Domain of unknown function (DUF4200) Prefoldin PF02996.12 gi|325967627|ref|YP_004243819.1| - 5.7 6.6 13.5 2.3 7.8 1.2 3.6 3 1 1 4 4 4 0 Prefoldin subunit SHOCT PF09851.4 gi|325967628|ref|YP_004243820.1| - 0.00075 18.8 7.3 0.022 14.2 0.6 3.6 3 1 0 3 3 3 1 Short C-terminal domain TBPIP PF07106.8 gi|325967628|ref|YP_004243820.1| - 0.012 15.1 3.8 0.053 13.0 0.6 2.2 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GvpG PF05120.7 gi|325967628|ref|YP_004243820.1| - 0.015 15.1 3.4 0.027 14.2 0.4 2.5 3 0 0 3 3 3 0 Gas vesicle protein G YtxH PF12732.2 gi|325967628|ref|YP_004243820.1| - 0.018 15.4 2.7 3.2 8.1 0.1 2.4 2 0 0 2 2 2 0 YtxH-like protein WASH-7_N PF14745.1 gi|325967628|ref|YP_004243820.1| - 0.023 12.9 1.1 0.041 12.0 0.7 1.4 1 0 0 1 1 1 0 WASH complex subunit 7, N-terminal AAA_13 PF13166.1 gi|325967628|ref|YP_004243820.1| - 0.027 12.9 3.5 0.039 12.4 2.5 1.2 1 0 0 1 1 1 0 AAA domain IncA PF04156.9 gi|325967628|ref|YP_004243820.1| - 0.033 13.7 0.1 6.7 6.2 0.1 2.2 1 1 1 2 2 2 0 IncA protein WEMBL PF05701.6 gi|325967628|ref|YP_004243820.1| - 0.036 12.5 2.1 0.043 12.2 0.3 1.7 1 1 1 2 2 2 0 Weak chloroplast movement under blue light Cortex-I_coil PF09304.5 gi|325967628|ref|YP_004243820.1| - 0.051 13.6 3.9 3.3 7.8 0.3 2.6 1 1 1 2 2 2 0 Cortexillin I, coiled coil DrrA_P4M PF14860.1 gi|325967628|ref|YP_004243820.1| - 0.058 13.1 2.3 0.072 12.8 0.7 1.8 2 0 0 2 2 2 0 DrrA phosphatidylinositol 4-phosphate binding domain LOH1CR12 PF10158.4 gi|325967628|ref|YP_004243820.1| - 0.08 12.7 0.4 0.27 11.0 0.1 2.1 2 1 0 2 2 2 0 Tumour suppressor protein Vip3A_N PF12495.3 gi|325967628|ref|YP_004243820.1| - 0.087 12.4 1.7 0.18 11.4 0.8 1.8 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal 23S_rRNA_IVP PF05635.6 gi|325967628|ref|YP_004243820.1| - 0.097 12.5 1.0 0.41 10.5 0.1 2.4 2 1 1 3 3 3 0 23S rRNA-intervening sequence protein DUF342 PF03961.8 gi|325967628|ref|YP_004243820.1| - 0.13 10.6 2.6 0.14 10.5 1.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Syntaxin PF00804.20 gi|325967628|ref|YP_004243820.1| - 0.14 12.3 5.3 0.42 10.7 2.0 2.4 2 1 0 2 2 2 0 Syntaxin AKNA PF12443.3 gi|325967628|ref|YP_004243820.1| - 0.17 11.9 1.1 2.1 8.4 0.1 2.3 2 0 0 2 2 2 0 AT-hook-containing transcription factor APG6 PF04111.7 gi|325967628|ref|YP_004243820.1| - 0.18 10.7 2.4 0.24 10.3 1.0 1.5 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF948 PF06103.6 gi|325967628|ref|YP_004243820.1| - 0.25 11.2 6.4 11 5.9 0.6 3.8 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) FlxA PF14282.1 gi|325967628|ref|YP_004243820.1| - 0.33 10.9 1.6 3.6 7.5 0.1 2.8 1 1 2 3 3 3 0 FlxA-like protein DUF2443 PF10398.4 gi|325967628|ref|YP_004243820.1| - 0.41 10.4 8.6 0.9 9.3 0.8 3.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2443) PuR_N PF09182.5 gi|325967628|ref|YP_004243820.1| - 0.43 10.2 0.0 0.43 10.2 0.0 2.7 4 0 0 4 4 3 0 Bacterial purine repressor, N-terminal Syntaxin-6_N PF09177.6 gi|325967628|ref|YP_004243820.1| - 0.48 10.8 4.5 5 7.6 1.4 3.0 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Fib_alpha PF08702.5 gi|325967628|ref|YP_004243820.1| - 1 9.5 6.5 7.3 6.7 0.6 3.0 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family COG5 PF10392.4 gi|325967628|ref|YP_004243820.1| - 1.4 8.8 5.1 2.4 8.1 1.2 2.6 1 1 1 3 3 3 0 Golgi transport complex subunit 5 Imm3 PF14425.1 gi|325967628|ref|YP_004243820.1| - 1.7 8.6 5.5 7.9 6.4 2.9 2.5 1 1 1 2 2 2 0 Immunity protein Imm3 Osmo_CC PF08946.5 gi|325967628|ref|YP_004243820.1| - 3.5 7.7 7.6 4.1 7.5 0.1 3.3 3 0 0 3 3 3 0 Osmosensory transporter coiled coil FlaC_arch PF05377.6 gi|325967628|ref|YP_004243820.1| - 8.3 6.3 9.4 6.8 6.6 0.2 3.9 4 1 1 5 5 5 0 Flagella accessory protein C (FlaC) Cation_efflux PF01545.16 gi|325967630|ref|YP_004243822.1| - 7.5e-68 228.6 30.4 5.4e-56 189.7 11.3 3.0 1 1 2 3 3 3 3 Cation efflux family AMP-binding_C_2 PF14535.1 gi|325967630|ref|YP_004243822.1| - 0.025 14.6 0.2 0.025 14.6 0.1 2.5 3 0 0 3 3 3 0 AMP-binding enzyme C-terminal domain DUF2067 PF09840.4 gi|325967631|ref|YP_004243823.1| - 5.2e-27 94.5 1.6 5.9e-27 94.4 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) ARPC4 PF05856.7 gi|325967631|ref|YP_004243823.1| - 0.15 11.4 0.9 0.41 10.0 0.1 2.0 1 1 1 3 3 3 0 ARP2/3 complex 20 kDa subunit (ARPC4) Glyco_tranf_2_3 PF13641.1 gi|325967632|ref|YP_004243824.1| - 1.2e-25 90.6 0.0 1.7e-25 90.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|325967632|ref|YP_004243824.1| - 8.7e-22 77.7 1.2 8.7e-22 77.7 0.8 3.2 2 1 1 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|325967632|ref|YP_004243824.1| - 1.1e-18 67.4 0.3 2.5e-18 66.3 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|325967632|ref|YP_004243824.1| - 2.5e-11 43.1 0.0 3.9e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|325967632|ref|YP_004243824.1| - 2.5e-09 36.6 0.0 3.5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Fork_head PF00250.13 gi|325967632|ref|YP_004243824.1| - 0.16 12.0 1.6 2.2 8.4 0.2 3.0 3 0 0 3 3 3 0 Fork head domain FAD_binding_3 PF01494.14 gi|325967633|ref|YP_004243825.1| - 1.7e-15 56.9 0.1 4.9e-14 52.1 0.0 2.7 2 1 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|325967633|ref|YP_004243825.1| - 4e-10 39.1 0.1 6e-06 25.3 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|325967633|ref|YP_004243825.1| - 3.4e-08 32.5 0.0 0.0002 20.1 0.0 2.9 2 1 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|325967633|ref|YP_004243825.1| - 3.1e-07 29.6 0.1 0.00094 18.1 0.0 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|325967633|ref|YP_004243825.1| - 4.8e-07 29.2 0.2 1.4e-06 27.6 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|325967633|ref|YP_004243825.1| - 1.9e-06 26.6 0.1 2.8e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|325967633|ref|YP_004243825.1| - 2.1e-05 24.4 0.0 8.1e-05 22.5 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|325967633|ref|YP_004243825.1| - 2.3e-05 23.4 0.1 5.4e-05 22.2 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|325967633|ref|YP_004243825.1| - 5.1e-05 22.2 0.1 7.7e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|325967633|ref|YP_004243825.1| - 5.6e-05 22.3 0.0 0.0001 21.4 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.9 gi|325967633|ref|YP_004243825.1| - 5.6e-05 23.1 0.6 9.4e-05 22.3 0.4 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|325967633|ref|YP_004243825.1| - 0.012 16.0 0.2 0.031 14.6 0.1 1.8 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|325967633|ref|YP_004243825.1| - 0.043 14.1 0.0 0.13 12.5 0.0 1.8 1 1 0 1 1 1 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|325967633|ref|YP_004243825.1| - 0.071 12.6 0.2 0.23 11.0 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.1 gi|325967633|ref|YP_004243825.1| - 0.11 12.5 0.1 0.18 11.8 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|325967633|ref|YP_004243825.1| - 0.15 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TRAM PF01938.15 gi|325967634|ref|YP_004243826.1| - 1.3e-11 44.0 0.4 1.8e-11 43.6 0.3 1.1 1 0 0 1 1 1 1 TRAM domain IF3_C PF00707.17 gi|325967634|ref|YP_004243826.1| - 0.0031 17.2 0.1 0.0032 17.1 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain PDZ_2 PF13180.1 gi|325967634|ref|YP_004243826.1| - 0.083 12.7 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 PDZ domain Metallophos PF00149.23 gi|325967635|ref|YP_004243827.1| - 2.8e-29 101.9 0.5 3.5e-29 101.6 0.3 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|325967635|ref|YP_004243827.1| - 8e-07 29.0 0.0 1.3e-06 28.3 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CDtoxinA PF03498.9 gi|325967636|ref|YP_004243828.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Cytolethal distending toxin A/C family T2SE PF00437.15 gi|325967637|ref|YP_004243829.1| - 5.5e-06 25.4 0.0 8.6e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|325967637|ref|YP_004243829.1| - 9.2e-05 22.5 0.8 0.002 18.2 0.6 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|325967637|ref|YP_004243829.1| - 0.00014 22.0 0.1 0.00024 21.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|325967637|ref|YP_004243829.1| - 0.0005 19.8 0.0 0.0008 19.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_29 PF13555.1 gi|325967637|ref|YP_004243829.1| - 0.0005 19.5 0.0 0.00097 18.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|325967637|ref|YP_004243829.1| - 0.0011 19.2 0.6 0.016 15.5 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|325967637|ref|YP_004243829.1| - 0.0013 18.2 0.0 0.0021 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|325967637|ref|YP_004243829.1| - 0.0013 18.2 0.1 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family MobB PF03205.9 gi|325967637|ref|YP_004243829.1| - 0.0026 17.4 0.0 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|325967637|ref|YP_004243829.1| - 0.0028 17.3 0.5 0.01 15.4 0.1 1.9 2 0 0 2 2 2 1 NACHT domain DEAD PF00270.24 gi|325967637|ref|YP_004243829.1| - 0.0029 17.1 0.0 0.0047 16.4 0.0 1.6 1 1 0 1 1 1 1 DEAD/DEAH box helicase ABC_tran PF00005.22 gi|325967637|ref|YP_004243829.1| - 0.0031 17.8 0.2 0.0072 16.6 0.1 1.5 1 0 0 1 1 1 1 ABC transporter NTPase_1 PF03266.10 gi|325967637|ref|YP_004243829.1| - 0.0042 16.8 0.3 0.013 15.1 0.1 1.8 1 1 1 2 2 2 1 NTPase AAA_10 PF12846.2 gi|325967637|ref|YP_004243829.1| - 0.0046 16.4 0.0 0.0071 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|325967637|ref|YP_004243829.1| - 0.0069 16.1 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|325967637|ref|YP_004243829.1| - 0.0074 17.1 0.1 0.011 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|325967637|ref|YP_004243829.1| - 0.0089 15.8 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.4 gi|325967637|ref|YP_004243829.1| - 0.0098 14.5 0.2 0.015 13.9 0.1 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|325967637|ref|YP_004243829.1| - 0.014 15.3 0.2 0.092 12.7 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|325967637|ref|YP_004243829.1| - 0.021 14.7 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|325967637|ref|YP_004243829.1| - 0.021 14.2 0.1 0.034 13.5 0.1 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|325967637|ref|YP_004243829.1| - 0.022 14.3 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|325967637|ref|YP_004243829.1| - 0.023 15.0 0.1 0.044 14.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain DBI_PRT PF02277.12 gi|325967637|ref|YP_004243829.1| - 0.023 13.8 0.1 0.033 13.2 0.0 1.1 1 0 0 1 1 1 0 Phosphoribosyltransferase DUF853 PF05872.7 gi|325967637|ref|YP_004243829.1| - 0.026 12.8 0.0 0.032 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Pox_A32 PF04665.7 gi|325967637|ref|YP_004243829.1| - 0.026 13.8 0.1 0.048 12.9 0.1 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein Sigma54_activat PF00158.21 gi|325967637|ref|YP_004243829.1| - 0.033 13.6 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|325967637|ref|YP_004243829.1| - 0.042 13.4 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|325967637|ref|YP_004243829.1| - 0.043 13.3 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DAP3 PF10236.4 gi|325967637|ref|YP_004243829.1| - 0.065 12.1 0.1 0.11 11.4 0.0 1.5 1 1 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 cobW PF02492.14 gi|325967637|ref|YP_004243829.1| - 0.069 12.5 0.1 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain GvpD PF07088.6 gi|325967637|ref|YP_004243829.1| - 0.075 11.3 0.0 0.12 10.6 0.0 1.4 1 0 0 1 1 1 0 GvpD gas vesicle protein DUF87 PF01935.12 gi|325967637|ref|YP_004243829.1| - 0.081 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 DUF2075 PF09848.4 gi|325967637|ref|YP_004243829.1| - 0.099 11.6 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|325967637|ref|YP_004243829.1| - 0.21 10.4 1.1 0.24 10.2 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain Flavin_Reduct PF01613.13 gi|325967638|ref|YP_004243830.1| - 3.5e-22 78.9 0.0 4.1e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain GFO_IDH_MocA PF01408.17 gi|325967639|ref|YP_004243831.1| - 5.1e-18 65.7 0.0 8.4e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|325967639|ref|YP_004243831.1| - 4.5e-07 29.6 0.0 8.4e-07 28.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain COXG PF06240.8 gi|325967640|ref|YP_004243832.1| - 1.6e-17 63.4 0.0 2e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|325967640|ref|YP_004243832.1| - 0.00036 20.7 0.0 0.00044 20.4 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport SoxG PF04268.7 gi|325967640|ref|YP_004243832.1| - 0.15 11.8 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Sarcosine oxidase, gamma subunit family DAO PF01266.19 gi|325967641|ref|YP_004243833.1| - 1e-50 172.6 1.1 1.2e-50 172.4 0.8 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|325967641|ref|YP_004243833.1| - 1e-06 28.1 8.0 7.1e-06 25.3 5.6 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|325967641|ref|YP_004243833.1| - 0.001 18.2 3.6 0.001 18.2 2.5 2.2 1 1 1 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|325967641|ref|YP_004243833.1| - 0.0018 17.2 1.9 0.003 16.4 1.3 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|325967641|ref|YP_004243833.1| - 0.0024 17.7 2.7 0.0054 16.6 1.9 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|325967641|ref|YP_004243833.1| - 0.0029 16.1 1.9 0.004 15.6 1.0 1.4 1 1 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|325967641|ref|YP_004243833.1| - 0.0031 17.4 1.6 0.0097 15.9 1.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|325967641|ref|YP_004243833.1| - 0.014 14.5 6.4 0.21 10.5 4.4 2.5 1 1 0 1 1 1 0 FAD binding domain GIDA PF01134.17 gi|325967641|ref|YP_004243833.1| - 0.1 11.4 4.1 0.076 11.8 1.1 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A GDPD PF03009.12 gi|325967642|ref|YP_004243834.1| - 2.7e-50 171.2 0.0 3.8e-50 170.7 0.0 1.2 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|325967642|ref|YP_004243834.1| - 6.4e-10 38.9 0.6 1.5e-07 31.3 0.2 2.5 2 0 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family Sugar_tr PF00083.19 gi|325967643|ref|YP_004243835.1| - 9.3e-66 222.2 31.8 1.1e-65 222.0 22.0 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325967643|ref|YP_004243835.1| - 4e-31 107.9 48.7 4e-31 107.9 33.7 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF1228 PF06779.9 gi|325967643|ref|YP_004243835.1| - 0.16 12.0 12.2 2.4 8.2 3.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1228) FGGY_N PF00370.16 gi|325967644|ref|YP_004243836.1| - 6.2e-70 235.2 0.0 8.2e-70 234.8 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|325967644|ref|YP_004243836.1| - 7.9e-60 201.8 0.1 3.8e-59 199.6 0.0 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|325967644|ref|YP_004243836.1| - 0.11 11.7 0.0 0.33 10.1 0.0 1.7 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Aminotran_1_2 PF00155.16 gi|325967645|ref|YP_004243837.1| - 4.1e-13 49.0 0.0 9e-13 47.9 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Baculo_VP1054 PF05789.6 gi|325967646|ref|YP_004243838.1| - 0.019 14.1 0.4 0.021 14.0 0.3 1.2 1 0 0 1 1 1 0 Baculovirus VP1054 protein Cytochrom_B_N_2 PF13631.1 gi|325967646|ref|YP_004243838.1| - 0.084 12.6 0.1 0.094 12.5 0.1 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB ATP-synt_8 PF00895.15 gi|325967646|ref|YP_004243838.1| - 0.19 11.9 1.6 0.29 11.3 1.1 1.3 1 0 0 1 1 1 0 ATP synthase protein 8 Methyltransf_26 PF13659.1 gi|325967647|ref|YP_004243839.1| - 5.7e-19 68.2 0.0 6.7e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325967647|ref|YP_004243839.1| - 6.5e-19 68.0 0.0 8.9e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|325967647|ref|YP_004243839.1| - 2.6e-16 59.4 0.0 4e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|325967647|ref|YP_004243839.1| - 1.3e-15 57.9 0.0 1.8e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|325967647|ref|YP_004243839.1| - 1e-11 44.7 0.0 1.5e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|325967647|ref|YP_004243839.1| - 3.7e-11 43.2 0.0 6.1e-11 42.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|325967647|ref|YP_004243839.1| - 5.3e-11 42.1 0.1 7.2e-11 41.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|325967647|ref|YP_004243839.1| - 1.1e-09 38.0 0.0 1.4e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|325967647|ref|YP_004243839.1| - 2.4e-09 37.5 0.0 4.6e-09 36.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|325967647|ref|YP_004243839.1| - 6e-08 32.4 0.1 8.4e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.7 gi|325967647|ref|YP_004243839.1| - 7e-08 32.8 0.0 1.9e-07 31.4 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain DUF43 PF01861.11 gi|325967647|ref|YP_004243839.1| - 2.5e-06 26.6 0.0 3.2e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_23 PF13489.1 gi|325967647|ref|YP_004243839.1| - 9e-06 25.4 0.0 1.2e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|325967647|ref|YP_004243839.1| - 2.1e-05 23.7 0.0 3.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|325967647|ref|YP_004243839.1| - 3.4e-05 23.0 0.0 5.1e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|325967647|ref|YP_004243839.1| - 8.8e-05 22.1 0.0 0.00014 21.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.11 gi|325967647|ref|YP_004243839.1| - 0.00031 20.3 0.1 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein NodS PF05401.6 gi|325967647|ref|YP_004243839.1| - 0.00041 19.7 0.0 0.00066 19.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_16 PF10294.4 gi|325967647|ref|YP_004243839.1| - 0.0055 16.1 0.8 0.12 11.8 0.1 2.5 2 1 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.14 gi|325967647|ref|YP_004243839.1| - 0.0061 16.5 0.0 0.0077 16.2 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.12 gi|325967647|ref|YP_004243839.1| - 0.0062 15.6 0.0 0.0062 15.6 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase Pox_MCEL PF03291.11 gi|325967647|ref|YP_004243839.1| - 0.0065 15.3 0.0 0.0087 14.9 0.0 1.2 1 0 0 1 1 1 1 mRNA capping enzyme Methyltrans_SAM PF10672.4 gi|325967647|ref|YP_004243839.1| - 0.0078 15.0 0.0 0.011 14.6 0.0 1.1 1 0 0 1 1 1 1 S-adenosylmethionine-dependent methyltransferase FmrO PF07091.6 gi|325967647|ref|YP_004243839.1| - 0.0095 14.9 0.0 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_9 PF08003.6 gi|325967647|ref|YP_004243839.1| - 0.014 14.0 0.0 0.02 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|325967647|ref|YP_004243839.1| - 0.014 15.0 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|325967647|ref|YP_004243839.1| - 0.024 13.6 0.0 0.035 13.1 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase ADH_zinc_N PF00107.21 gi|325967647|ref|YP_004243839.1| - 0.036 13.6 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase GidB PF02527.10 gi|325967647|ref|YP_004243839.1| - 0.081 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|325967647|ref|YP_004243839.1| - 0.096 11.7 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Trp_syntA PF00290.15 gi|325967647|ref|YP_004243839.1| - 0.1 11.1 0.0 0.18 10.3 0.0 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain PhoU PF01895.14 gi|325967648|ref|YP_004243840.1| - 2.3e-09 37.5 1.8 2.3e-09 37.5 1.3 2.6 1 1 1 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|325967648|ref|YP_004243840.1| - 9.3e-06 25.2 2.1 2.4e-05 23.9 1.4 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Prominin PF05478.6 gi|325967648|ref|YP_004243840.1| - 0.0039 14.7 1.1 0.013 13.0 0.2 1.6 1 1 1 2 2 2 1 Prominin DUF2258 PF10015.4 gi|325967648|ref|YP_004243840.1| - 0.024 14.4 3.0 0.031 14.0 0.3 2.6 3 0 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2258) Synaptonemal_3 PF15191.1 gi|325967648|ref|YP_004243840.1| - 0.11 12.2 0.2 0.11 12.2 0.1 2.2 2 1 0 2 2 2 0 Synaptonemal complex central element protein 3 DUF2096 PF09869.4 gi|325967648|ref|YP_004243840.1| - 0.18 11.6 3.8 1.2 9.0 0.1 2.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2096) CorA PF01544.13 gi|325967648|ref|YP_004243840.1| - 0.29 10.1 4.2 0.45 9.5 2.9 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein CTP_transf_2 PF01467.21 gi|325967649|ref|YP_004243841.1| - 8.3e-10 38.9 0.0 1.2e-09 38.3 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|325967649|ref|YP_004243841.1| - 0.024 14.2 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase Peptidase_M28 PF04389.12 gi|325967650|ref|YP_004243842.1| - 6.7e-15 55.2 0.0 3.7e-14 52.8 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|325967650|ref|YP_004243842.1| - 0.014 15.1 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 PA domain DUF2811 PF10929.3 gi|325967650|ref|YP_004243842.1| - 0.12 12.4 0.0 0.28 11.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2811) CEP170_C PF15308.1 gi|325967650|ref|YP_004243842.1| - 0.15 10.2 0.1 0.22 9.7 0.1 1.1 1 0 0 1 1 1 0 CEP170 C-terminus FOP_dimer PF09398.5 gi|325967651|ref|YP_004243843.1| - 0.027 14.4 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 FOP N terminal dimerisation domain DUF4064 PF13273.1 gi|325967652|ref|YP_004243844.1| - 0.00099 19.1 16.1 0.00099 19.1 11.1 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4064) LAB_N PF07578.6 gi|325967652|ref|YP_004243844.1| - 0.029 14.3 0.2 0.029 14.3 0.2 2.7 2 1 0 2 2 2 0 Lipid A Biosynthesis N-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|325967653|ref|YP_004243845.1| - 2.9e-37 128.0 1.4 4.6e-37 127.4 1.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|325967653|ref|YP_004243845.1| - 1.1e-18 67.8 0.0 3.1e-18 66.4 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|325967653|ref|YP_004243845.1| - 3.3e-17 62.9 0.1 5.2e-17 62.3 0.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|325967653|ref|YP_004243845.1| - 1.6e-11 43.5 0.2 3.3e-11 42.5 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF763 PF05559.6 gi|325967654|ref|YP_004243846.1| - 2.8e-114 381.3 0.0 3.4e-114 381.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Methyltransf_19 PF04672.7 gi|325967654|ref|YP_004243846.1| - 0.11 11.7 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl methyltransferase nsp8 PF08717.5 gi|325967655|ref|YP_004243847.1| - 0.0055 16.3 1.3 0.0075 15.8 0.9 1.2 1 0 0 1 1 1 1 nsp8 replicase HMA PF00403.21 gi|325967655|ref|YP_004243847.1| - 0.06 13.4 0.2 3.4 7.8 0.0 2.6 2 2 0 2 2 2 0 Heavy-metal-associated domain PCI PF01399.22 gi|325967655|ref|YP_004243847.1| - 0.2 11.9 1.9 0.4 11.0 0.5 2.1 2 1 0 2 2 2 0 PCI domain SK_channel PF03530.9 gi|325967655|ref|YP_004243847.1| - 0.82 9.5 5.7 4.1 7.2 4.0 1.9 1 1 0 1 1 1 0 Calcium-activated SK potassium channel Orthopox_F14 PF06076.7 gi|325967655|ref|YP_004243847.1| - 0.93 9.5 6.0 1.1 9.3 1.5 2.6 2 1 1 3 3 3 0 Orthopoxvirus F14 protein zf-C2H2_4 PF13894.1 gi|325967656|ref|YP_004243848.1| - 0.02 15.1 0.2 0.02 15.1 0.2 2.0 2 1 1 3 3 3 0 C2H2-type zinc finger DNA_ligase_ZBD PF03119.11 gi|325967656|ref|YP_004243848.1| - 0.043 13.5 0.3 0.087 12.5 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain ARS2 PF04959.8 gi|325967656|ref|YP_004243848.1| - 0.045 13.9 0.1 0.048 13.8 0.1 1.1 1 0 0 1 1 1 0 Arsenite-resistance protein 2 zf-C2H2_2 PF12756.2 gi|325967656|ref|YP_004243848.1| - 0.056 13.5 0.3 0.058 13.5 0.2 1.1 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) zf-C3HC4_3 PF13920.1 gi|325967656|ref|YP_004243848.1| - 0.12 12.1 1.8 0.12 12.0 0.6 1.5 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.7 gi|325967656|ref|YP_004243848.1| - 0.2 11.0 0.1 0.2 11.0 0.0 1.5 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.6 gi|325967656|ref|YP_004243848.1| - 0.2 11.1 0.4 0.2 11.1 0.3 1.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.3 gi|325967656|ref|YP_004243848.1| - 0.21 11.5 2.2 0.35 10.8 1.5 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|325967656|ref|YP_004243848.1| - 0.36 10.1 1.9 0.79 9.0 0.2 1.8 1 1 1 2 2 2 0 zinc-ribbon domain Phosphorylase PF00343.15 gi|325967657|ref|YP_004243849.1| - 8.8e-12 43.7 0.1 1.2e-10 39.9 0.0 2.3 1 1 1 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|325967657|ref|YP_004243849.1| - 3.3e-07 29.8 0.0 1.3e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325967657|ref|YP_004243849.1| - 2.9e-05 24.2 0.0 7.2e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|325967657|ref|YP_004243849.1| - 0.0031 17.0 0.0 0.013 15.0 0.0 2.0 2 0 0 2 2 2 1 Starch synthase catalytic domain CobS PF02654.10 gi|325967658|ref|YP_004243850.1| - 1.1e-35 123.3 14.6 1.3e-35 123.1 10.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CitMHS PF03600.11 gi|325967659|ref|YP_004243851.1| - 1.3e-38 132.5 26.3 1e-33 116.3 13.6 2.0 1 1 1 2 2 2 2 Citrate transporter DUF3397 PF11877.3 gi|325967659|ref|YP_004243851.1| - 0.00041 20.3 0.1 0.00041 20.3 0.1 4.2 3 2 1 4 4 4 1 Protein of unknown function (DUF3397) AAA_18 PF13238.1 gi|325967661|ref|YP_004243853.1| - 9.1e-13 48.6 0.0 1.5e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325967661|ref|YP_004243853.1| - 2e-10 41.5 0.0 2.4e-10 41.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|325967661|ref|YP_004243853.1| - 7.5e-06 25.8 0.0 2e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 Shikimate kinase AAA_24 PF13479.1 gi|325967661|ref|YP_004243853.1| - 5.2e-05 22.9 0.1 8.1e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|325967661|ref|YP_004243853.1| - 0.002 18.3 0.1 0.0036 17.4 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|325967661|ref|YP_004243853.1| - 0.0041 16.8 0.3 0.012 15.2 0.1 1.9 1 1 1 2 2 2 1 NTPase KTI12 PF08433.5 gi|325967661|ref|YP_004243853.1| - 0.0054 15.9 0.0 0.009 15.2 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|325967661|ref|YP_004243853.1| - 0.0069 16.3 0.0 0.011 15.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|325967661|ref|YP_004243853.1| - 0.013 15.4 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|325967661|ref|YP_004243853.1| - 0.015 15.0 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.1 gi|325967661|ref|YP_004243853.1| - 0.026 14.2 0.1 0.054 13.2 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_16 PF13191.1 gi|325967661|ref|YP_004243853.1| - 0.032 14.1 0.1 0.068 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain CoaE PF01121.15 gi|325967661|ref|YP_004243853.1| - 0.053 12.9 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_22 PF13401.1 gi|325967661|ref|YP_004243853.1| - 0.079 13.0 0.4 0.29 11.2 0.1 2.0 2 1 1 3 3 3 0 AAA domain DUF2075 PF09848.4 gi|325967661|ref|YP_004243853.1| - 0.083 11.8 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|325967661|ref|YP_004243853.1| - 0.098 12.5 0.1 0.15 11.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|325967661|ref|YP_004243853.1| - 0.11 11.9 1.0 0.31 10.4 0.1 2.0 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|325967661|ref|YP_004243853.1| - 0.13 11.7 0.4 0.35 10.2 0.3 1.7 1 1 0 1 1 1 0 IstB-like ATP binding protein Rad17 PF03215.10 gi|325967661|ref|YP_004243853.1| - 0.13 10.9 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Mg_chelatase PF01078.16 gi|325967661|ref|YP_004243853.1| - 0.15 11.1 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI tRNA-synt_2 PF00152.15 gi|325967662|ref|YP_004243854.1| - 2.7e-82 276.2 0.0 3.9e-82 275.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|325967662|ref|YP_004243854.1| - 1.7e-10 40.5 0.3 4e-10 39.4 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|325967662|ref|YP_004243854.1| - 0.00035 19.8 0.3 0.035 13.2 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class II core domain (F) BOF PF04076.8 gi|325967662|ref|YP_004243854.1| - 0.072 12.9 0.2 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein SP_C-Propep PF08999.5 gi|325967663|ref|YP_004243855.1| - 0.053 12.9 0.2 0.097 12.1 0.1 1.5 1 1 1 2 2 2 0 Surfactant protein C, N terminal propeptide 7tm_1 PF00001.16 gi|325967663|ref|YP_004243855.1| - 0.075 12.1 0.0 0.075 12.1 0.0 1.0 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) FeoB_C PF07664.7 gi|325967663|ref|YP_004243855.1| - 0.099 12.0 0.8 0.14 11.5 0.6 1.2 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus DUF1512 PF07431.7 gi|325967664|ref|YP_004243856.1| - 5.9e-106 354.1 0.6 6.5e-106 354.0 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) HSCB_C PF07743.8 gi|325967664|ref|YP_004243856.1| - 0.059 13.8 0.0 0.78 10.2 0.0 2.3 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain Radical_SAM PF04055.16 gi|325967665|ref|YP_004243857.1| - 1.5e-12 48.0 0.0 2.7e-12 47.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|325967665|ref|YP_004243857.1| - 2.2e-06 27.8 0.0 3.7e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|325967665|ref|YP_004243857.1| - 2.2e-06 27.6 0.0 3.9e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|325967665|ref|YP_004243857.1| - 0.061 13.6 0.1 0.2 12.0 0.1 2.0 1 1 0 1 1 1 0 Iron-sulfur cluster-binding domain Laminin_II PF06009.7 gi|325967666|ref|YP_004243858.1| - 0.00089 19.0 1.9 0.03 14.0 0.9 2.4 2 0 0 2 2 2 1 Laminin Domain II GAT PF03127.9 gi|325967666|ref|YP_004243858.1| - 0.044 13.7 2.8 0.43 10.5 0.1 2.8 1 1 1 2 2 2 0 GAT domain DUF2262 PF10020.4 gi|325967666|ref|YP_004243858.1| - 0.057 13.6 21.3 0.048 13.8 2.4 4.5 2 2 2 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2262) CENP-N PF05238.8 gi|325967666|ref|YP_004243858.1| - 0.12 11.3 8.0 0.084 11.9 3.3 2.2 2 1 1 3 3 3 0 Kinetochore protein CHL4 like Hemerythrin PF01814.18 gi|325967666|ref|YP_004243858.1| - 0.34 11.0 8.2 3.5 7.7 4.8 2.8 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain DIL PF01843.14 gi|325967666|ref|YP_004243858.1| - 0.58 10.0 2.4 0.51 10.2 0.3 1.9 2 0 0 2 2 2 0 DIL domain DUF1908 PF08926.6 gi|325967666|ref|YP_004243858.1| - 0.58 8.8 2.6 1.1 7.9 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) zf-C4H2 PF10146.4 gi|325967666|ref|YP_004243858.1| - 2 8.3 6.6 4.7 7.1 4.6 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein CR6_interact PF10147.4 gi|325967666|ref|YP_004243858.1| - 7.3 5.8 11.0 0.76 9.0 4.0 1.9 2 0 0 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 MFS_1 PF07690.11 gi|325967667|ref|YP_004243859.1| - 2.7e-43 148.0 42.3 2.7e-43 148.0 29.3 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF4396 PF14342.1 gi|325967667|ref|YP_004243859.1| - 0.0026 17.8 0.4 0.0026 17.8 0.3 4.3 5 1 0 5 5 5 1 Domain of unknown function (DUF4396) CHD5 PF04420.9 gi|325967667|ref|YP_004243859.1| - 2.5 7.7 5.4 0.33 10.5 0.8 1.8 2 1 0 2 2 2 0 CHD5-like protein Cren7 PF11520.3 gi|325967669|ref|YP_004243861.1| - 3.3e-17 61.8 1.2 3.8e-17 61.6 0.9 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 DHBP_synthase PF00926.14 gi|325967670|ref|YP_004243862.1| - 4.8e-52 175.9 0.0 5.6e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase NTP_transferase PF00483.18 gi|325967671|ref|YP_004243863.1| - 7.1e-35 120.4 0.0 8.1e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|325967671|ref|YP_004243863.1| - 1.4e-13 51.2 0.0 3e-13 50.1 0.0 1.5 1 1 0 2 2 2 1 MobA-like NTP transferase domain IspD PF01128.14 gi|325967671|ref|YP_004243863.1| - 1.2e-05 24.9 0.0 2.6e-05 23.8 0.0 1.6 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.1 gi|325967671|ref|YP_004243863.1| - 0.0026 17.2 0.0 0.0046 16.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4224) CTP_transf_3 PF02348.14 gi|325967671|ref|YP_004243863.1| - 0.044 13.3 0.0 0.39 10.3 0.0 2.1 2 0 0 2 2 2 0 Cytidylyltransferase MoaC PF01967.16 gi|325967672|ref|YP_004243864.1| - 5e-55 184.8 1.4 1.8e-30 105.3 0.3 2.1 2 0 0 2 2 2 2 MoaC family Thymidylate_kin PF02223.12 gi|325967673|ref|YP_004243865.1| - 5.1e-47 159.6 0.0 5.8e-47 159.4 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|325967673|ref|YP_004243865.1| - 0.00023 21.4 0.0 0.0031 17.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|325967673|ref|YP_004243865.1| - 0.00061 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|325967673|ref|YP_004243865.1| - 0.00091 18.0 0.0 0.0012 17.7 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_30 PF13604.1 gi|325967673|ref|YP_004243865.1| - 0.00093 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325967673|ref|YP_004243865.1| - 0.00097 19.9 0.3 0.0068 17.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|325967673|ref|YP_004243865.1| - 0.001 19.0 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain dNK PF01712.14 gi|325967673|ref|YP_004243865.1| - 0.0016 18.3 0.1 0.0022 17.9 0.1 1.2 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.1 gi|325967673|ref|YP_004243865.1| - 0.0071 16.2 0.0 0.019 14.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|325967673|ref|YP_004243865.1| - 0.012 15.3 0.1 0.059 13.0 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.1 gi|325967673|ref|YP_004243865.1| - 0.067 13.1 0.0 0.088 12.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain PPK2 PF03976.9 gi|325967673|ref|YP_004243865.1| - 0.075 12.3 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) KAP_NTPase PF07693.9 gi|325967673|ref|YP_004243865.1| - 0.082 11.8 0.0 0.09 11.7 0.0 1.1 1 0 0 1 1 1 0 KAP family P-loop domain AAA_22 PF13401.1 gi|325967673|ref|YP_004243865.1| - 0.088 12.9 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|325967673|ref|YP_004243865.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase SKI PF01202.17 gi|325967673|ref|YP_004243865.1| - 0.15 11.9 0.1 2.5 7.9 0.0 2.1 2 0 0 2 2 2 0 Shikimate kinase DUF3185 PF11381.3 gi|325967674|ref|YP_004243866.1| - 1.7e-05 24.4 18.8 0.00081 19.0 2.9 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF3185) DUF4097 PF13349.1 gi|325967674|ref|YP_004243866.1| - 0.042 13.4 23.4 0.83 9.1 6.8 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4097) CRPA PF05745.6 gi|325967674|ref|YP_004243866.1| - 0.046 13.5 0.7 0.046 13.5 0.5 2.2 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) Neurensin PF14927.1 gi|325967674|ref|YP_004243866.1| - 0.27 10.6 4.7 3.6 6.9 0.6 2.3 2 0 0 2 2 2 0 Neurensin DUF872 PF05915.7 gi|325967674|ref|YP_004243866.1| - 0.52 10.1 8.5 2.1 8.2 0.6 2.3 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) TctB PF07331.6 gi|325967674|ref|YP_004243866.1| - 0.64 9.6 7.4 4.6 6.8 0.5 2.2 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF3040 PF11239.3 gi|325967674|ref|YP_004243866.1| - 1.2 9.2 12.3 2.8 8.0 0.4 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) DUF1206 PF06724.6 gi|325967674|ref|YP_004243866.1| - 2.7 7.8 9.4 0.78 9.5 0.5 2.4 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) DUF4064 PF13273.1 gi|325967674|ref|YP_004243866.1| - 2.9 8.0 15.6 1.7 8.7 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) NfeD PF01957.13 gi|325967674|ref|YP_004243866.1| - 3.1 7.9 9.3 1.2 9.2 1.2 2.3 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding DUF1469 PF07332.6 gi|325967674|ref|YP_004243866.1| - 4.4 7.0 8.1 12 5.6 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF3068 PF11271.3 gi|325967674|ref|YP_004243866.1| - 4.7 6.1 8.3 4.2 6.3 0.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3068) NAD_binding_5 PF07994.7 gi|325967675|ref|YP_004243867.1| - 4.6e-40 137.9 0.0 1.8e-39 136.0 0.0 1.7 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|325967675|ref|YP_004243867.1| - 1.1e-21 76.6 0.0 2e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Corona_S2 PF01601.11 gi|325967675|ref|YP_004243867.1| - 0.016 13.3 0.0 0.022 12.8 0.0 1.2 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein KaiC PF06745.8 gi|325967676|ref|YP_004243868.1| - 1.6e-62 210.5 0.1 1.8e-62 210.4 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|325967676|ref|YP_004243868.1| - 1.5e-08 34.2 0.0 2.3e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|325967676|ref|YP_004243868.1| - 0.0001 21.5 0.0 0.00017 20.7 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|325967676|ref|YP_004243868.1| - 0.00028 19.3 1.0 0.00092 17.6 0.7 1.7 1 1 0 1 1 1 1 GvpD gas vesicle protein DEAD PF00270.24 gi|325967676|ref|YP_004243868.1| - 0.0056 16.1 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase ATP-synt_ab PF00006.20 gi|325967676|ref|YP_004243868.1| - 0.0057 16.1 0.0 0.0081 15.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_16 PF13191.1 gi|325967676|ref|YP_004243868.1| - 0.013 15.5 0.0 0.031 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.10 gi|325967676|ref|YP_004243868.1| - 0.025 14.4 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|325967676|ref|YP_004243868.1| - 0.035 13.0 0.0 0.046 12.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|325967676|ref|YP_004243868.1| - 0.077 12.2 0.2 0.35 10.0 0.1 1.9 2 0 0 2 2 2 0 PhoH-like protein PAXNEB PF05625.6 gi|325967676|ref|YP_004243868.1| - 0.078 11.8 0.4 0.12 11.1 0.3 1.2 1 0 0 1 1 1 0 PAXNEB protein T2SE PF00437.15 gi|325967676|ref|YP_004243868.1| - 0.097 11.5 0.1 0.16 10.8 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|325967676|ref|YP_004243868.1| - 0.13 12.3 1.3 0.91 9.6 0.9 2.1 1 1 0 1 1 1 0 AAA domain TPP_enzyme_C PF02775.16 gi|325967677|ref|YP_004243869.1| - 2e-28 98.8 0.1 4.1e-28 97.8 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|325967677|ref|YP_004243869.1| - 4.8e-11 42.4 0.5 2.9e-10 39.9 0.3 2.1 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|325967678|ref|YP_004243870.1| - 1e-60 205.1 0.0 1.5e-60 204.5 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|325967678|ref|YP_004243870.1| - 6.7e-33 114.0 0.0 3.3e-32 111.7 0.0 2.1 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|325967678|ref|YP_004243870.1| - 1.9e-06 27.5 0.0 5.2e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|325967678|ref|YP_004243870.1| - 2.7e-05 24.1 0.0 6.5e-05 22.8 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain PaREP1 PF05942.6 gi|325967680|ref|YP_004243872.1| - 0.0015 18.4 0.1 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF2250 PF10007.4 gi|325967684|ref|YP_004243876.1| - 1.2e-33 114.8 0.2 1.4e-33 114.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|325967684|ref|YP_004243876.1| - 4.1e-05 23.2 0.1 8.3e-05 22.2 0.1 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|325967684|ref|YP_004243876.1| - 0.00017 21.1 0.1 0.00062 19.3 0.1 1.9 1 1 0 1 1 1 1 MarR family DUF4423 PF14394.1 gi|325967684|ref|YP_004243876.1| - 0.0013 18.2 0.0 0.0013 18.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.17 gi|325967684|ref|YP_004243876.1| - 0.0014 18.3 0.2 0.36 10.5 0.1 2.4 2 0 0 2 2 2 2 MarR family Rrf2 PF02082.15 gi|325967684|ref|YP_004243876.1| - 0.0014 18.7 0.1 0.002 18.1 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|325967684|ref|YP_004243876.1| - 0.011 15.0 0.1 0.13 11.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|325967684|ref|YP_004243876.1| - 0.057 12.9 0.1 0.16 11.4 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 PAPS_reduct PF01507.14 gi|325967684|ref|YP_004243876.1| - 0.063 13.0 0.0 0.067 13.0 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family HTH_27 PF13463.1 gi|325967684|ref|YP_004243876.1| - 0.12 12.7 0.1 0.19 12.0 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain CcdA PF07362.7 gi|325967685|ref|YP_004243877.1| - 2.6e-07 30.3 0.6 3.4e-07 30.0 0.4 1.3 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|325967685|ref|YP_004243877.1| - 2.2e-05 24.1 0.6 2.2e-05 24.1 0.4 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2067 PF09840.4 gi|325967685|ref|YP_004243877.1| - 0.0062 16.0 4.2 0.0076 15.7 2.9 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) eIF3_N PF09440.5 gi|325967685|ref|YP_004243877.1| - 0.02 15.0 0.8 0.064 13.4 0.6 1.7 1 1 0 1 1 1 0 eIF3 subunit 6 N terminal domain RHH_3 PF12651.2 gi|325967685|ref|YP_004243877.1| - 0.021 14.5 3.4 0.43 10.3 0.1 2.5 2 1 0 2 2 2 0 Ribbon-helix-helix domain Ribosomal_L22 PF00237.14 gi|325967685|ref|YP_004243877.1| - 0.041 13.8 0.1 0.048 13.5 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L22p/L17e CARD PF00619.16 gi|325967685|ref|YP_004243877.1| - 0.058 13.2 1.3 0.073 12.9 0.9 1.2 1 0 0 1 1 1 0 Caspase recruitment domain PHP PF02811.14 gi|325967685|ref|YP_004243877.1| - 0.059 13.1 0.0 0.061 13.1 0.0 1.0 1 0 0 1 1 1 0 PHP domain Isy1 PF06246.7 gi|325967685|ref|YP_004243877.1| - 0.061 12.7 1.0 0.063 12.6 0.7 1.0 1 0 0 1 1 1 0 Isy1-like splicing family NYD-SP28_assoc PF14775.1 gi|325967685|ref|YP_004243877.1| - 0.073 12.7 0.6 0.13 11.9 0.4 1.5 1 0 0 1 1 1 0 Sperm tail C-terminal domain Myb_DNA-bind_6 PF13921.1 gi|325967685|ref|YP_004243877.1| - 0.11 12.6 0.2 0.24 11.5 0.0 1.6 2 0 0 2 2 2 0 Myb-like DNA-binding domain GvpK PF05121.7 gi|325967685|ref|YP_004243877.1| - 0.48 10.2 3.7 0.99 9.2 2.5 1.6 1 1 0 1 1 1 0 Gas vesicle protein K CRF PF00473.12 gi|325967685|ref|YP_004243877.1| - 2.1 8.5 5.4 0.37 10.9 0.8 1.8 2 0 0 2 2 2 0 Corticotropin-releasing factor family PIN_2 PF10130.4 gi|325967686|ref|YP_004243878.1| - 2.9e-08 33.8 0.1 3.5e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|325967686|ref|YP_004243878.1| - 0.00022 21.5 0.7 0.00027 21.2 0.5 1.1 1 0 0 1 1 1 1 PIN domain DUF1048 PF06304.6 gi|325967686|ref|YP_004243878.1| - 0.07 13.4 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1048) EamA PF00892.15 gi|325967687|ref|YP_004243879.1| - 3.6e-24 85.1 41.5 5.5e-14 52.2 11.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|325967687|ref|YP_004243879.1| - 6e-05 23.2 12.5 6e-05 23.2 8.7 3.2 2 2 1 3 3 3 2 Multidrug resistance efflux transporter NIR_SIR PF01077.17 gi|325967688|ref|YP_004243880.1| - 4e-29 101.0 0.0 3.2e-19 68.8 0.0 2.4 2 1 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|325967688|ref|YP_004243880.1| - 1.8e-11 43.4 0.0 9.2e-05 21.9 0.0 2.5 2 0 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Radical_SAM PF04055.16 gi|325967689|ref|YP_004243881.1| - 0.00018 21.6 1.9 0.0018 18.5 1.4 2.5 1 1 0 1 1 1 1 Radical SAM superfamily IF2_N PF04760.10 gi|325967689|ref|YP_004243881.1| - 0.082 12.5 0.1 11 5.8 0.0 3.3 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region PAC2 PF09754.4 gi|325967689|ref|YP_004243881.1| - 0.17 11.7 0.0 0.26 11.1 0.0 1.2 1 0 0 1 1 1 0 PAC2 family Arch_ATPase PF01637.13 gi|325967690|ref|YP_004243882.1| - 1.5e-31 109.9 0.2 2.6e-31 109.1 0.0 1.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|325967690|ref|YP_004243882.1| - 4.9e-07 29.9 0.5 2.2e-06 27.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|325967690|ref|YP_004243882.1| - 5.6e-07 29.5 0.2 0.0009 19.1 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|325967690|ref|YP_004243882.1| - 1.6e-05 25.0 0.1 3.5e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|325967690|ref|YP_004243882.1| - 0.0049 17.6 0.2 0.083 13.7 0.2 2.5 1 1 0 1 1 1 1 AAA domain DUF4423 PF14394.1 gi|325967690|ref|YP_004243882.1| - 0.024 14.1 0.1 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) AAA PF00004.24 gi|325967690|ref|YP_004243882.1| - 0.028 14.6 0.0 0.34 11.0 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_Crp_2 PF13545.1 gi|325967690|ref|YP_004243882.1| - 0.04 13.6 0.1 0.16 11.7 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF4393 PF14337.1 gi|325967690|ref|YP_004243882.1| - 0.1 12.0 0.2 0.2 11.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) YqzM PF14141.1 gi|325967691|ref|YP_004243883.1| - 0.0063 16.2 1.0 0.0063 16.2 0.7 1.9 2 0 0 2 2 2 1 YqzM-like protein SurA_N_3 PF13624.1 gi|325967691|ref|YP_004243883.1| - 0.036 14.0 0.7 0.036 14.0 0.5 1.4 1 1 1 2 2 2 0 SurA N-terminal domain DUF420 PF04238.7 gi|325967691|ref|YP_004243883.1| - 0.04 13.8 1.0 0.045 13.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF420) TRP PF06011.7 gi|325967691|ref|YP_004243883.1| - 0.054 12.0 3.1 0.063 11.8 2.1 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel CcmD PF04995.9 gi|325967691|ref|YP_004243883.1| - 0.27 10.9 0.2 0.27 10.9 0.1 1.8 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) PepSY_TM PF03929.11 gi|325967691|ref|YP_004243883.1| - 0.42 11.1 5.1 0.33 11.4 1.0 2.1 2 0 0 2 2 2 0 PepSY-associated TM helix DUF1029 PF06269.7 gi|325967691|ref|YP_004243883.1| - 0.63 10.0 4.4 3.4 7.7 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1029) DUF2975 PF11188.3 gi|325967691|ref|YP_004243883.1| - 1.2 8.8 5.8 30 4.3 4.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) DUF4389 PF14333.1 gi|325967691|ref|YP_004243883.1| - 1.2 8.9 4.1 0.58 9.8 1.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4389) DUF788 PF05620.6 gi|325967692|ref|YP_004243884.1| - 0.19 11.5 0.7 0.21 11.4 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF788) DUF2142 PF09913.4 gi|325967692|ref|YP_004243884.1| - 0.42 9.2 4.6 0.48 9.0 3.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) DUF2427 PF10348.4 gi|325967692|ref|YP_004243884.1| - 0.64 9.6 4.8 0.84 9.2 3.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF983 PF06170.7 gi|325967692|ref|YP_004243884.1| - 3 8.0 5.6 3.9 7.6 3.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF983) PilO PF04350.8 gi|325967693|ref|YP_004243885.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Pilus assembly protein, PilO RmlD_sub_bind PF04321.12 gi|325967694|ref|YP_004243886.1| - 9.9e-59 198.5 0.0 1.1e-58 198.4 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|325967694|ref|YP_004243886.1| - 3.6e-18 65.8 0.1 5.1e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|325967694|ref|YP_004243886.1| - 1.3e-10 40.7 0.0 1.4e-09 37.3 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|325967694|ref|YP_004243886.1| - 4.9e-09 35.4 0.0 6.9e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.14 gi|325967694|ref|YP_004243886.1| - 3.6e-06 25.8 0.0 5.6e-06 25.2 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family PNP_UDP_1 PF01048.15 gi|325967694|ref|YP_004243886.1| - 0.11 11.4 0.0 0.24 10.3 0.0 1.5 2 0 0 2 2 2 0 Phosphorylase superfamily Copper-bind PF00127.15 gi|325967695|ref|YP_004243887.1| - 9.8e-07 28.9 0.0 2.4e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cu-oxidase_3 PF07732.10 gi|325967695|ref|YP_004243887.1| - 0.00023 20.8 1.7 0.00065 19.4 0.5 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|325967695|ref|YP_004243887.1| - 0.12 11.8 0.1 0.35 10.3 0.0 1.8 2 0 0 2 2 2 0 Multicopper oxidase SoxE PF06525.6 gi|325967695|ref|YP_004243887.1| - 0.62 9.3 21.8 2.5 7.3 15.1 2.1 1 1 0 1 1 1 0 Sulfocyanin (SoxE) DUF2227 PF09988.4 gi|325967696|ref|YP_004243888.1| - 0.021 14.4 1.5 0.023 14.3 1.0 1.1 1 0 0 1 1 1 0 Uncharacterized metal-binding protein (DUF2227) DUF1517 PF07466.6 gi|325967696|ref|YP_004243888.1| - 0.046 12.7 0.1 0.046 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) HemY_N PF07219.8 gi|325967696|ref|YP_004243888.1| - 0.047 13.2 2.7 0.058 12.9 1.9 1.1 1 0 0 1 1 1 0 HemY protein N-terminus DUF3754 PF12576.3 gi|325967696|ref|YP_004243888.1| - 0.1 12.2 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) DUF2244 PF10003.4 gi|325967696|ref|YP_004243888.1| - 0.11 11.8 5.4 0.14 11.5 3.8 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Syndecan PF01034.15 gi|325967696|ref|YP_004243888.1| - 0.11 12.1 2.0 0.15 11.7 1.4 1.2 1 0 0 1 1 1 0 Syndecan domain DUF3329 PF11808.3 gi|325967696|ref|YP_004243888.1| - 0.13 12.3 3.2 0.15 12.1 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) GP41 PF00517.12 gi|325967696|ref|YP_004243888.1| - 0.17 11.3 5.1 0.19 11.2 3.6 1.0 1 0 0 1 1 1 0 Retroviral envelope protein EphA2_TM PF14575.1 gi|325967696|ref|YP_004243888.1| - 0.19 12.1 0.8 0.22 11.9 0.5 1.1 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain FA_desaturase PF00487.19 gi|325967696|ref|YP_004243888.1| - 0.19 11.1 6.4 0.22 10.9 4.4 1.1 1 0 0 1 1 1 0 Fatty acid desaturase ODV-E18 PF10717.4 gi|325967696|ref|YP_004243888.1| - 0.37 10.2 1.6 0.43 10.0 1.1 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF4131 PF13567.1 gi|325967696|ref|YP_004243888.1| - 0.99 8.7 4.0 1.1 8.6 2.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) MarR_2 PF12802.2 gi|325967697|ref|YP_004243889.1| - 3.1e-06 26.7 0.0 4.7e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|325967697|ref|YP_004243889.1| - 0.0033 17.1 0.1 0.005 16.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|325967697|ref|YP_004243889.1| - 0.0096 15.2 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|325967697|ref|YP_004243889.1| - 0.029 14.0 0.0 0.084 12.6 0.0 1.6 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.7 gi|325967697|ref|YP_004243889.1| - 0.047 13.3 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|325967697|ref|YP_004243889.1| - 0.061 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|325967697|ref|YP_004243889.1| - 0.087 12.8 0.2 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fijivirus_P9-2 PF06837.6 gi|325967697|ref|YP_004243889.1| - 2.2 7.3 5.4 2.8 7.0 3.8 1.2 1 0 0 1 1 1 0 Fijivirus P9-2 protein YrhC PF14143.1 gi|325967697|ref|YP_004243889.1| - 3.4 7.6 5.7 5.7 6.9 3.4 1.7 1 1 0 1 1 1 0 YrhC-like protein FAA_hydrolase PF01557.13 gi|325967698|ref|YP_004243890.1| - 1.9e-68 230.2 0.0 2.3e-68 229.9 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Pyr_redox_2 PF07992.9 gi|325967699|ref|YP_004243891.1| - 1.7e-19 70.5 7.3 1.6e-18 67.3 5.1 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|325967699|ref|YP_004243891.1| - 9.7e-14 51.8 0.2 3.9e-07 30.3 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|325967699|ref|YP_004243891.1| - 1.3e-09 37.4 1.8 0.014 14.2 0.1 3.1 3 0 0 3 3 3 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|325967699|ref|YP_004243891.1| - 1.1e-08 34.9 1.5 1.8e-06 27.8 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|325967699|ref|YP_004243891.1| - 2.1e-07 31.2 7.7 0.0022 18.3 1.2 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|325967699|ref|YP_004243891.1| - 6.2e-06 25.3 6.0 0.083 11.7 0.2 3.7 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.9 gi|325967699|ref|YP_004243891.1| - 8.9e-05 21.1 2.9 0.0016 17.0 0.1 2.6 3 0 0 3 3 3 1 HI0933-like protein Shikimate_DH PF01488.15 gi|325967699|ref|YP_004243891.1| - 0.00054 20.0 1.3 0.086 12.9 0.2 2.4 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|325967699|ref|YP_004243891.1| - 0.00059 18.9 0.7 0.036 13.1 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|325967699|ref|YP_004243891.1| - 0.00067 19.2 0.3 0.23 11.0 0.0 2.8 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.2 gi|325967699|ref|YP_004243891.1| - 0.001 18.2 1.3 0.093 11.7 0.5 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|325967699|ref|YP_004243891.1| - 0.0026 16.8 0.9 0.0057 15.7 0.1 1.9 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|325967699|ref|YP_004243891.1| - 0.0026 17.4 1.8 0.16 11.6 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|325967699|ref|YP_004243891.1| - 0.0072 16.1 2.0 0.027 14.2 0.2 2.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|325967699|ref|YP_004243891.1| - 0.012 14.4 7.7 0.16 10.8 0.4 2.8 2 1 0 3 3 3 0 Glucose inhibited division protein A NAD_binding_10 PF13460.1 gi|325967699|ref|YP_004243891.1| - 0.45 10.4 3.0 66 3.4 0.3 3.5 4 0 0 4 4 4 0 NADH(P)-binding F420_oxidored PF03807.12 gi|325967699|ref|YP_004243891.1| - 0.67 10.4 4.1 14 6.1 0.4 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF89 PF01937.14 gi|325967700|ref|YP_004243892.1| - 1.4e-20 73.4 1.3 9.7e-20 70.6 0.9 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF89 Glyco_trans_4_4 PF13579.1 gi|325967700|ref|YP_004243892.1| - 0.067 13.3 0.1 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain IF-2B PF01008.12 gi|325967701|ref|YP_004243893.1| - 2.5e-22 79.2 0.1 8.6e-21 74.1 0.0 2.3 1 1 0 1 1 1 1 Initiation factor 2 subunit family HrpB1_HrpK PF09613.5 gi|325967701|ref|YP_004243893.1| - 0.054 12.9 0.1 0.093 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) CxxCxxCC PF03692.10 gi|325967702|ref|YP_004243894.1| - 4.9e-11 42.9 0.7 7.1e-11 42.4 0.5 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Stap_Strp_tox_C PF02876.12 gi|325967702|ref|YP_004243894.1| - 0.12 12.4 0.0 0.2 11.8 0.0 1.4 2 0 0 2 2 2 0 Staphylococcal/Streptococcal toxin, beta-grasp domain DegT_DnrJ_EryC1 PF01041.12 gi|325967703|ref|YP_004243895.1| - 2.4e-123 411.7 0.0 2.8e-123 411.5 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|325967703|ref|YP_004243895.1| - 3.2e-08 33.0 0.0 4.3e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|325967703|ref|YP_004243895.1| - 2.2e-06 26.6 0.4 1.5e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|325967703|ref|YP_004243895.1| - 4.5e-06 25.8 0.2 1.2e-05 24.5 0.0 1.8 2 1 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|325967703|ref|YP_004243895.1| - 1.1e-05 23.8 0.1 1.6e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Cren7 PF11520.3 gi|325967704|ref|YP_004243896.1| - 3.3e-17 61.8 1.2 3.8e-17 61.6 0.9 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 PRC PF05239.11 gi|325967705|ref|YP_004243897.1| - 1.7e-05 24.5 1.4 3.8e-05 23.4 0.9 1.6 1 0 0 1 1 1 1 PRC-barrel domain ISG65-75 PF11727.3 gi|325967705|ref|YP_004243897.1| - 0.0017 17.4 2.3 0.0024 16.9 1.6 1.1 1 0 0 1 1 1 1 Invariant surface glycoprotein Spc7 PF08317.6 gi|325967705|ref|YP_004243897.1| - 0.0033 16.1 5.9 0.005 15.5 3.6 1.6 1 1 1 2 2 2 1 Spc7 kinetochore protein Snapin_Pallidin PF14712.1 gi|325967705|ref|YP_004243897.1| - 0.007 16.6 5.2 0.022 15.0 0.1 3.1 2 2 1 3 3 3 1 Snapin/Pallidin AAA_13 PF13166.1 gi|325967705|ref|YP_004243897.1| - 0.0072 14.8 3.4 0.0092 14.4 2.3 1.1 1 0 0 1 1 1 1 AAA domain RRF PF01765.14 gi|325967705|ref|YP_004243897.1| - 0.012 15.0 0.6 0.012 15.0 0.4 1.7 1 1 1 2 2 2 0 Ribosome recycling factor FadA PF09403.5 gi|325967705|ref|YP_004243897.1| - 0.024 14.6 2.1 0.055 13.4 1.5 1.6 1 1 0 1 1 1 0 Adhesion protein FadA Atg14 PF10186.4 gi|325967705|ref|YP_004243897.1| - 0.025 13.5 6.0 0.054 12.4 4.1 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Baculo_PEP_C PF04513.7 gi|325967705|ref|YP_004243897.1| - 0.027 14.3 4.6 1.1 9.0 0.3 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus CorA PF01544.13 gi|325967705|ref|YP_004243897.1| - 0.029 13.4 6.3 0.039 12.9 4.4 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein NPV_P10 PF05531.7 gi|325967705|ref|YP_004243897.1| - 0.029 14.5 4.4 11 6.4 3.0 3.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Arch_flagellin PF01917.11 gi|325967705|ref|YP_004243897.1| - 0.042 13.4 0.6 0.15 11.6 0.2 1.8 1 1 1 2 2 2 0 Archaebacterial flagellin WXG100 PF06013.7 gi|325967705|ref|YP_004243897.1| - 0.11 12.5 0.1 5.1 7.1 0.0 2.7 3 0 0 3 3 3 0 Proteins of 100 residues with WXG LXG PF04740.7 gi|325967705|ref|YP_004243897.1| - 0.12 12.1 2.3 0.19 11.4 1.6 1.3 1 0 0 1 1 1 0 LXG domain of WXG superfamily Syntaxin_2 PF14523.1 gi|325967705|ref|YP_004243897.1| - 0.12 12.4 5.2 11 6.0 0.0 2.8 1 1 1 2 2 2 0 Syntaxin-like protein DUF948 PF06103.6 gi|325967705|ref|YP_004243897.1| - 0.14 12.0 2.4 0.82 9.5 0.1 2.4 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) V_ATPase_I PF01496.14 gi|325967705|ref|YP_004243897.1| - 0.18 9.6 3.3 0.23 9.2 2.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF4140 PF13600.1 gi|325967705|ref|YP_004243897.1| - 0.21 12.0 3.3 19 5.7 0.2 2.9 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) Laminin_II PF06009.7 gi|325967705|ref|YP_004243897.1| - 0.24 11.1 4.8 7.6 6.2 0.5 2.8 1 1 1 2 2 2 0 Laminin Domain II Baculo_p24 PF05073.7 gi|325967705|ref|YP_004243897.1| - 0.26 10.8 4.1 1.4 8.4 0.3 2.2 1 1 1 2 2 2 0 Baculovirus P24 capsid protein TBPIP PF07106.8 gi|325967705|ref|YP_004243897.1| - 0.27 10.7 6.5 2.1 7.8 0.1 2.4 1 1 2 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_23 PF13476.1 gi|325967705|ref|YP_004243897.1| - 0.35 11.1 4.9 0.48 10.7 3.4 1.3 1 0 0 1 1 1 0 AAA domain Latarcin PF10279.4 gi|325967705|ref|YP_004243897.1| - 0.47 10.6 3.5 9.3 6.5 0.2 2.6 2 1 0 2 2 2 0 Latarcin precursor TSC22 PF01166.13 gi|325967705|ref|YP_004243897.1| - 0.66 9.9 3.8 0.62 10.0 0.2 2.5 2 1 0 2 2 2 0 TSC-22/dip/bun family Syntaxin-6_N PF09177.6 gi|325967705|ref|YP_004243897.1| - 0.7 10.3 4.2 2.8 8.4 0.2 2.8 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Syntaxin PF00804.20 gi|325967705|ref|YP_004243897.1| - 0.76 9.9 7.0 0.89 9.7 2.8 2.3 1 1 1 2 2 2 0 Syntaxin SPX PF03105.14 gi|325967705|ref|YP_004243897.1| - 0.77 9.4 3.4 1.3 8.7 2.3 1.4 1 1 0 1 1 1 0 SPX domain IncA PF04156.9 gi|325967705|ref|YP_004243897.1| - 0.91 9.0 8.5 1.4 8.4 3.7 2.3 1 1 1 2 2 2 0 IncA protein MtrG PF04210.8 gi|325967705|ref|YP_004243897.1| - 1.2 8.8 8.0 13 5.5 0.2 3.8 2 1 3 5 5 5 0 Tetrahydromethanopterin S-methyltransferase, subunit G V-SNARE_C PF12352.3 gi|325967705|ref|YP_004243897.1| - 1.8 8.7 5.5 5 7.2 0.1 2.9 3 0 0 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus FlaC_arch PF05377.6 gi|325967705|ref|YP_004243897.1| - 2.5 8.0 6.0 9.8 6.1 0.1 3.2 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Hrs_helical PF12210.3 gi|325967705|ref|YP_004243897.1| - 5.1 7.4 6.5 33 4.7 1.3 3.0 1 1 1 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate Cep57_CLD_2 PF14197.1 gi|325967705|ref|YP_004243897.1| - 5.8 6.9 9.1 1.6 8.7 1.0 2.6 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 Ribosomal_L29 PF00831.18 gi|325967705|ref|YP_004243897.1| - 7.1 6.3 8.2 1.3 8.7 1.3 2.6 2 1 1 3 3 2 0 Ribosomal L29 protein MerR-DNA-bind PF09278.6 gi|325967705|ref|YP_004243897.1| - 8.5 6.8 7.9 12 6.3 0.5 2.8 3 0 0 3 3 3 0 MerR, DNA binding Lar_restr_allev PF14354.1 gi|325967706|ref|YP_004243898.1| - 0.0028 17.8 0.1 0.0034 17.6 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-FPG_IleRS PF06827.9 gi|325967706|ref|YP_004243898.1| - 0.015 14.9 0.6 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-trcl PF13451.1 gi|325967706|ref|YP_004243898.1| - 0.017 14.7 1.7 0.42 10.2 0.1 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain A2L_zn_ribbon PF08792.5 gi|325967706|ref|YP_004243898.1| - 0.037 13.5 1.7 0.71 9.4 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|325967706|ref|YP_004243898.1| - 0.058 13.6 0.8 0.075 13.3 0.5 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF3797 PF12677.2 gi|325967706|ref|YP_004243898.1| - 0.07 12.7 3.7 2.5 7.7 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Mu-like_Com PF10122.4 gi|325967706|ref|YP_004243898.1| - 0.18 10.8 1.4 0.28 10.2 0.1 1.8 2 0 0 2 2 2 0 Mu-like prophage protein Com RimK PF08443.6 gi|325967707|ref|YP_004243899.1| - 3.1e-33 114.8 0.0 3.8e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|325967707|ref|YP_004243899.1| - 1.3e-16 60.2 0.2 6e-16 58.0 0.1 1.9 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325967707|ref|YP_004243899.1| - 1.8e-10 40.8 0.0 2.8e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|325967707|ref|YP_004243899.1| - 8e-10 38.8 0.1 1.2e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|325967707|ref|YP_004243899.1| - 0.00068 18.4 0.0 0.002 16.9 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATPgrasp_YheCD PF14398.1 gi|325967707|ref|YP_004243899.1| - 0.0015 17.3 0.1 0.029 13.1 0.0 2.3 2 1 1 3 3 3 1 YheC/D like ATP-grasp PgaD PF13994.1 gi|325967708|ref|YP_004243900.1| - 0.2 11.1 5.3 0.054 12.9 1.1 1.8 1 1 1 2 2 2 0 PgaD-like protein Ninjurin PF04923.7 gi|325967708|ref|YP_004243900.1| - 4.9 6.9 9.3 4.6 7.0 0.1 2.9 3 0 0 3 3 3 0 Ninjurin zf-ribbon_3 PF13248.1 gi|325967709|ref|YP_004243901.1| - 0.00048 19.2 3.4 0.0026 16.9 2.4 1.9 1 1 0 1 1 1 1 zinc-ribbon domain DUF3797 PF12677.2 gi|325967709|ref|YP_004243901.1| - 0.0018 17.8 0.2 0.56 9.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3797) zf-ISL3 PF14690.1 gi|325967709|ref|YP_004243901.1| - 0.002 18.0 0.7 1.3 9.1 0.0 2.2 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IBR PF01485.16 gi|325967709|ref|YP_004243901.1| - 0.0053 16.6 0.1 0.0066 16.2 0.1 1.2 1 0 0 1 1 1 1 IBR domain zinc_ribbon_2 PF13240.1 gi|325967709|ref|YP_004243901.1| - 0.0061 16.0 3.8 0.71 9.4 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|325967709|ref|YP_004243901.1| - 0.008 15.9 0.6 0.83 9.4 0.0 2.1 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|325967709|ref|YP_004243901.1| - 0.012 15.2 0.9 0.24 11.0 0.6 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|325967709|ref|YP_004243901.1| - 0.012 15.1 2.6 1 9.0 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|325967709|ref|YP_004243901.1| - 0.02 14.3 1.2 1.1 8.7 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.1 gi|325967709|ref|YP_004243901.1| - 0.025 14.2 2.9 2.9 7.6 2.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|325967709|ref|YP_004243901.1| - 0.025 14.4 1.5 0.088 12.7 1.1 1.8 1 1 0 1 1 1 0 Rubredoxin UPF0547 PF10571.4 gi|325967709|ref|YP_004243901.1| - 0.04 13.6 4.4 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|325967709|ref|YP_004243901.1| - 0.04 13.8 0.5 4.1 7.4 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|325967709|ref|YP_004243901.1| - 0.047 12.8 0.3 6.9 5.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger DZR PF12773.2 gi|325967709|ref|YP_004243901.1| - 0.047 13.5 1.6 0.26 11.1 1.1 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-tcix PF14952.1 gi|325967709|ref|YP_004243901.1| - 0.056 12.7 0.9 0.76 9.1 0.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF359 PF04019.7 gi|325967709|ref|YP_004243901.1| - 0.064 12.6 0.0 0.072 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF359) zf-DNA_Pol PF08996.5 gi|325967709|ref|YP_004243901.1| - 0.068 12.5 0.0 0.075 12.3 0.0 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Zn_Tnp_IS1595 PF12760.2 gi|325967709|ref|YP_004243901.1| - 0.07 12.9 0.5 3 7.7 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|325967709|ref|YP_004243901.1| - 0.082 12.5 2.1 0.69 9.6 0.2 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|325967709|ref|YP_004243901.1| - 0.13 12.2 1.0 9.3 6.3 0.0 2.2 2 0 0 2 2 2 0 zinc-finger zf-RING_4 PF14570.1 gi|325967709|ref|YP_004243901.1| - 0.14 11.7 0.8 3 7.5 0.1 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain TF_Zn_Ribbon PF08271.7 gi|325967709|ref|YP_004243901.1| - 0.14 11.4 2.4 3.5 7.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DUF164 PF02591.10 gi|325967709|ref|YP_004243901.1| - 0.2 11.5 1.1 13 5.6 0.1 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-CSL PF05207.8 gi|325967709|ref|YP_004243901.1| - 0.23 10.9 1.6 3.5 7.1 1.2 2.0 1 1 0 1 1 1 0 CSL zinc finger zf-Mss51 PF13824.1 gi|325967709|ref|YP_004243901.1| - 0.24 11.2 1.3 1.4 8.8 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RING_2 PF13639.1 gi|325967709|ref|YP_004243901.1| - 0.28 11.0 2.0 3.5 7.5 0.1 2.1 2 0 0 2 2 2 0 Ring finger domain zf-NADH-PPase PF09297.6 gi|325967709|ref|YP_004243901.1| - 0.39 10.2 4.3 16 5.1 0.0 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DiS_P_DiS PF06750.8 gi|325967709|ref|YP_004243901.1| - 0.41 10.4 2.0 1 9.2 1.3 1.7 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zf-H2C2_2 PF13465.1 gi|325967709|ref|YP_004243901.1| - 0.41 11.0 3.4 9.2 6.7 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-IS66 PF13005.2 gi|325967709|ref|YP_004243901.1| - 2.2 8.3 4.2 6.9 6.7 0.1 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Cys_rich_KTR PF14205.1 gi|325967709|ref|YP_004243901.1| - 4.1 6.9 5.9 1.7 8.1 0.5 2.2 2 1 0 2 2 2 0 Cysteine-rich KTR Sgf11 PF08209.6 gi|325967709|ref|YP_004243901.1| - 4.2 6.7 5.5 2.5 7.4 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF1610 PF07754.6 gi|325967709|ref|YP_004243901.1| - 7.1 6.8 12.2 2.4 8.3 1.3 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF1678 PF07913.6 gi|325967710|ref|YP_004243902.1| - 0.066 12.7 0.0 0.078 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1678) Tic22 PF04278.7 gi|325967711|ref|YP_004243903.1| - 0.021 14.1 0.3 0.025 13.8 0.2 1.1 1 0 0 1 1 1 0 Tic22-like family PHB_acc_N PF07879.6 gi|325967711|ref|YP_004243903.1| - 0.031 14.0 0.7 0.92 9.2 0.1 2.6 2 1 0 2 2 2 0 PHB/PHA accumulation regulator DNA-binding domain SspH PF08141.7 gi|325967711|ref|YP_004243903.1| - 0.068 13.2 0.8 0.22 11.6 0.3 1.9 2 0 0 2 2 2 0 Small acid-soluble spore protein H family PfkB PF00294.19 gi|325967713|ref|YP_004243905.1| - 1.6e-15 57.0 0.0 3.2e-15 56.0 0.0 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase DUF1866 PF08952.6 gi|325967714|ref|YP_004243906.1| - 0.014 14.9 0.5 7.6 6.0 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1866) UFD1 PF03152.9 gi|325967714|ref|YP_004243906.1| - 0.069 12.2 0.1 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 Peptidase_M24 PF00557.19 gi|325967715|ref|YP_004243907.1| - 2.3e-58 197.2 0.4 2.9e-58 196.8 0.3 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|325967715|ref|YP_004243907.1| - 2.5e-06 27.9 0.0 8.4e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain HD PF01966.17 gi|325967716|ref|YP_004243908.1| - 6.6e-09 35.8 0.3 2e-08 34.2 0.2 1.9 1 0 0 1 1 1 1 HD domain FAD_binding_3 PF01494.14 gi|325967717|ref|YP_004243909.1| - 2.9e-06 26.5 1.1 0.00089 18.4 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|325967717|ref|YP_004243909.1| - 3.1e-06 26.3 0.2 0.013 14.4 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.19 gi|325967717|ref|YP_004243909.1| - 0.00069 18.6 0.1 0.42 9.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|325967717|ref|YP_004243909.1| - 0.001 18.2 0.5 0.0029 16.7 0.0 1.9 2 0 0 2 2 2 1 Thi4 family SE PF08491.5 gi|325967717|ref|YP_004243909.1| - 0.0038 16.1 0.1 0.0058 15.4 0.1 1.3 1 0 0 1 1 1 1 Squalene epoxidase NAD_binding_8 PF13450.1 gi|325967717|ref|YP_004243909.1| - 0.0039 17.1 0.1 0.015 15.3 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|325967717|ref|YP_004243909.1| - 0.0042 15.6 0.0 0.0072 14.8 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.9 gi|325967717|ref|YP_004243909.1| - 0.0092 14.6 0.0 1.6 7.2 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|325967717|ref|YP_004243909.1| - 0.046 13.4 0.0 0.13 12.0 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|325967717|ref|YP_004243909.1| - 0.048 13.6 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_2 PF07992.9 gi|325967717|ref|YP_004243909.1| - 0.075 12.8 0.3 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|325967717|ref|YP_004243909.1| - 0.079 13.3 0.0 0.3 11.5 0.0 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase tRNA-synt_1b PF00579.20 gi|325967718|ref|YP_004243910.1| - 2.3e-40 138.5 0.0 3.3e-40 138.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF371 PF04027.8 gi|325967719|ref|YP_004243911.1| - 8.1e-50 167.8 0.4 1e-49 167.5 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) CTP_transf_1 PF01148.15 gi|325967720|ref|YP_004243912.1| - 0.078 12.6 16.8 0.22 11.1 11.7 1.9 1 1 0 1 1 1 0 Cytidylyltransferase family ERGIC_N PF13850.1 gi|325967720|ref|YP_004243912.1| - 0.26 11.2 1.6 0.84 9.6 0.1 2.3 2 0 0 2 2 2 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) IlvN PF07991.7 gi|325967721|ref|YP_004243913.1| - 7.1e-56 188.1 0.0 1.1e-55 187.4 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|325967721|ref|YP_004243913.1| - 5.1e-19 68.6 0.0 6.6e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|325967721|ref|YP_004243913.1| - 2.2e-09 37.3 0.0 3.6e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|325967721|ref|YP_004243913.1| - 7.4e-07 29.5 0.0 1.5e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|325967721|ref|YP_004243913.1| - 5.8e-06 26.2 0.1 1.5e-05 24.9 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|325967721|ref|YP_004243913.1| - 5.8e-06 25.5 0.0 1.1e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|325967721|ref|YP_004243913.1| - 0.0032 17.1 0.0 0.0056 16.4 0.0 1.3 1 0 0 1 1 1 1 Rossmann-like domain NAD_Gly3P_dh_N PF01210.18 gi|325967721|ref|YP_004243913.1| - 0.014 15.1 0.3 1.8 8.2 0.2 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CoA_binding PF02629.14 gi|325967721|ref|YP_004243913.1| - 0.04 14.4 0.1 0.1 13.0 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain Porphobil_deam PF01379.15 gi|325967722|ref|YP_004243914.1| - 8.2e-70 234.0 0.0 1e-69 233.7 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|325967722|ref|YP_004243914.1| - 6.3e-14 51.8 0.0 1.2e-13 50.9 0.0 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.15 gi|325967722|ref|YP_004243914.1| - 0.014 14.6 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 AAA_17 PF13207.1 gi|325967723|ref|YP_004243915.1| - 3.1e-08 34.4 0.6 1.3e-07 32.5 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|325967723|ref|YP_004243915.1| - 0.00013 22.2 0.0 0.00076 19.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|325967723|ref|YP_004243915.1| - 0.00046 19.9 3.1 0.011 15.4 0.0 2.8 2 0 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|325967723|ref|YP_004243915.1| - 0.00051 20.3 2.9 0.00052 20.3 0.2 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|325967723|ref|YP_004243915.1| - 0.0018 18.4 0.1 0.028 14.5 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|325967723|ref|YP_004243915.1| - 0.0025 17.8 0.0 0.0072 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|325967723|ref|YP_004243915.1| - 0.0089 15.9 0.0 0.023 14.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|325967723|ref|YP_004243915.1| - 0.04 13.6 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|325967723|ref|YP_004243915.1| - 0.085 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_23 PF13384.1 gi|325967724|ref|YP_004243916.1| - 1.5e-07 30.8 0.0 2.7e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|325967724|ref|YP_004243916.1| - 1.1e-06 28.0 0.2 2.9e-06 26.6 0.0 1.9 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_40 PF14493.1 gi|325967724|ref|YP_004243916.1| - 1.7e-05 24.9 0.1 3.6e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.7 gi|325967724|ref|YP_004243916.1| - 3.5e-05 23.2 0.0 6.5e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.1 gi|325967724|ref|YP_004243916.1| - 8.8e-05 22.4 0.0 0.00019 21.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|325967724|ref|YP_004243916.1| - 0.00015 21.2 0.0 0.00037 19.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|325967724|ref|YP_004243916.1| - 0.00047 20.3 0.0 0.00096 19.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|325967724|ref|YP_004243916.1| - 0.00059 19.4 0.1 0.0019 17.7 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|325967724|ref|YP_004243916.1| - 0.00073 18.8 0.1 0.0026 17.1 0.0 1.9 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|325967724|ref|YP_004243916.1| - 0.00089 19.3 0.0 0.0021 18.2 0.0 1.6 2 0 0 2 2 1 1 Winged helix-turn helix GerE PF00196.14 gi|325967724|ref|YP_004243916.1| - 0.0018 17.5 0.0 0.0036 16.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_Tnp_1 PF01527.15 gi|325967724|ref|YP_004243916.1| - 0.0022 17.9 0.0 0.0038 17.1 0.0 1.3 1 0 0 1 1 1 1 Transposase HTH_30 PF13556.1 gi|325967724|ref|YP_004243916.1| - 0.0035 16.8 0.0 0.0078 15.7 0.0 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_22 PF13309.1 gi|325967724|ref|YP_004243916.1| - 0.004 16.8 0.3 0.024 14.3 0.0 2.4 3 0 0 3 3 2 1 HTH domain DUF603 PF04645.7 gi|325967724|ref|YP_004243916.1| - 0.0062 16.5 1.0 0.03 14.2 0.7 2.0 1 1 0 1 1 1 1 Protein of unknown function, DUF603 UPF0122 PF04297.9 gi|325967724|ref|YP_004243916.1| - 0.0062 16.5 1.8 0.0086 16.0 0.2 1.9 1 1 1 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|325967724|ref|YP_004243916.1| - 0.0079 15.4 0.0 0.018 14.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 RasGEF PF00617.14 gi|325967724|ref|YP_004243916.1| - 0.01 15.6 0.1 0.16 11.7 0.0 2.1 1 1 1 2 2 2 0 RasGEF domain Sigma70_ECF PF07638.6 gi|325967724|ref|YP_004243916.1| - 0.012 15.3 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_3 PF01381.17 gi|325967724|ref|YP_004243916.1| - 0.017 14.9 0.5 0.066 13.0 0.0 2.2 3 0 0 3 3 2 0 Helix-turn-helix HTH_7 PF02796.10 gi|325967724|ref|YP_004243916.1| - 0.023 14.5 0.0 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF746 PF05344.6 gi|325967724|ref|YP_004243916.1| - 0.036 13.5 0.0 0.17 11.4 0.0 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) RPA_C PF08784.6 gi|325967724|ref|YP_004243916.1| - 0.038 14.4 0.3 0.27 11.6 0.0 2.4 2 1 1 3 3 3 0 Replication protein A C terminal HTH_36 PF13730.1 gi|325967724|ref|YP_004243916.1| - 0.064 13.3 0.8 0.14 12.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain Mga PF05043.8 gi|325967724|ref|YP_004243916.1| - 0.072 13.3 0.1 0.18 12.1 0.0 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|325967724|ref|YP_004243916.1| - 0.077 12.6 0.0 0.31 10.7 0.0 1.8 2 0 0 2 2 2 0 Transposase HTH_8 PF02954.14 gi|325967724|ref|YP_004243916.1| - 0.079 12.5 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family TrmB PF01978.14 gi|325967724|ref|YP_004243916.1| - 0.083 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|325967724|ref|YP_004243916.1| - 0.093 12.5 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF134 PF02001.11 gi|325967724|ref|YP_004243916.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 HTH_10 PF04967.7 gi|325967724|ref|YP_004243916.1| - 0.11 12.1 0.0 0.25 10.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain POTRA_1 PF08478.5 gi|325967724|ref|YP_004243916.1| - 0.11 12.5 0.1 0.87 9.6 0.0 2.3 2 0 0 2 2 2 0 POTRA domain, FtsQ-type TPR_MLP1_2 PF07926.7 gi|325967724|ref|YP_004243916.1| - 0.15 11.7 2.9 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Asparaginase_2 PF01112.13 gi|325967725|ref|YP_004243917.1| - 1.1e-68 231.2 2.3 1.6e-68 230.8 1.6 1.2 1 0 0 1 1 1 1 Asparaginase Spc42p PF11544.3 gi|325967725|ref|YP_004243917.1| - 0.036 14.0 1.4 0.061 13.2 1.0 1.3 1 0 0 1 1 1 0 Spindle pole body component Spc42p Amidohydro_1 PF01979.15 gi|325967726|ref|YP_004243918.1| - 1.5e-36 126.6 0.0 2.5e-36 126.0 0.0 1.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|325967726|ref|YP_004243918.1| - 2.9e-10 40.6 0.1 3.7e-06 27.1 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|325967726|ref|YP_004243918.1| - 9e-10 38.2 0.9 2.1e-09 37.0 0.0 2.1 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|325967726|ref|YP_004243918.1| - 1.7e-09 37.3 0.1 3.3e-07 29.8 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.17 gi|325967726|ref|YP_004243918.1| - 0.00052 19.0 0.0 0.00091 18.2 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase ATP_bind_4 PF01902.12 gi|325967727|ref|YP_004243919.1| - 3.1e-55 186.8 0.0 3.5e-55 186.7 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|325967727|ref|YP_004243919.1| - 0.011 15.0 0.0 0.03 13.6 0.0 1.8 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|325967727|ref|YP_004243919.1| - 0.12 11.7 0.0 0.64 9.4 0.0 1.9 1 1 1 2 2 2 0 Thiamine biosynthesis protein (ThiI) RNA_pol_Rpb1_3 PF04983.13 gi|325967727|ref|YP_004243919.1| - 0.13 12.0 0.1 0.44 10.2 0.0 1.8 2 1 0 2 2 2 0 RNA polymerase Rpb1, domain 3 zinc_ribbon_5 PF13719.1 gi|325967728|ref|YP_004243920.1| - 3.3e-07 29.7 0.4 0.017 14.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|325967728|ref|YP_004243920.1| - 4.2e-07 29.5 0.4 0.017 14.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.1 gi|325967728|ref|YP_004243920.1| - 4.1e-06 26.7 0.2 0.022 14.6 0.0 2.1 2 0 0 2 2 2 2 CpXC protein zf-ribbon_3 PF13248.1 gi|325967728|ref|YP_004243920.1| - 1.1e-05 24.5 1.4 0.071 12.3 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|325967728|ref|YP_004243920.1| - 6.3e-05 22.3 2.5 0.17 11.4 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|325967728|ref|YP_004243920.1| - 7.7e-05 22.4 1.2 0.0063 16.3 0.1 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-H2C2_2 PF13465.1 gi|325967728|ref|YP_004243920.1| - 0.00011 22.3 0.7 0.25 11.7 0.0 2.2 2 0 0 2 2 2 2 Zinc-finger double domain UPF0547 PF10571.4 gi|325967728|ref|YP_004243920.1| - 0.00019 21.0 3.4 0.036 13.7 0.5 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 Lar_restr_allev PF14354.1 gi|325967728|ref|YP_004243920.1| - 0.00034 20.8 0.1 0.00043 20.5 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-CHCC PF10276.4 gi|325967728|ref|YP_004243920.1| - 0.0004 20.1 1.2 0.092 12.5 0.2 2.2 2 0 0 2 2 2 1 Zinc-finger domain TerY-C PF15616.1 gi|325967728|ref|YP_004243920.1| - 0.00094 19.1 0.8 0.0017 18.2 0.5 1.5 1 1 0 1 1 1 1 TerY-C metal binding domain zf-IS66 PF13005.2 gi|325967728|ref|YP_004243920.1| - 0.0011 18.9 0.2 0.42 10.6 0.0 2.3 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-C2H2_4 PF13894.1 gi|325967728|ref|YP_004243920.1| - 0.0012 19.0 2.9 0.91 10.0 0.1 2.3 2 0 0 2 2 2 2 C2H2-type zinc finger zf-BED PF02892.10 gi|325967728|ref|YP_004243920.1| - 0.0012 18.5 0.7 0.64 9.8 0.0 2.2 1 1 1 2 2 2 1 BED zinc finger Elf1 PF05129.8 gi|325967728|ref|YP_004243920.1| - 0.0014 18.3 0.0 0.0018 17.9 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-Di19 PF05605.7 gi|325967728|ref|YP_004243920.1| - 0.0018 18.3 1.7 0.57 10.3 0.2 2.1 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding zf-C2HC_2 PF13913.1 gi|325967728|ref|YP_004243920.1| - 0.0019 17.8 4.0 0.22 11.2 0.3 2.3 2 0 0 2 2 2 2 zinc-finger of a C2HC-type zf-RING_3 PF14369.1 gi|325967728|ref|YP_004243920.1| - 0.0021 18.0 0.2 1.5 8.8 0.0 2.2 2 0 0 2 2 2 1 zinc-finger FYDLN_acid PF09538.5 gi|325967728|ref|YP_004243920.1| - 0.0024 18.4 0.4 1.1 9.8 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) zf-AN1 PF01428.11 gi|325967728|ref|YP_004243920.1| - 0.0025 17.6 0.6 1.8 8.5 0.1 2.1 2 0 0 2 2 2 1 AN1-like Zinc finger zf-C2H2_6 PF13912.1 gi|325967728|ref|YP_004243920.1| - 0.0027 17.5 0.4 0.6 10.0 0.1 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger zf-ISL3 PF14690.1 gi|325967728|ref|YP_004243920.1| - 0.003 17.5 0.5 1.1 9.3 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF329 PF03884.9 gi|325967728|ref|YP_004243920.1| - 0.0034 16.9 0.2 0.72 9.4 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF329) Zn-ribbon_8 PF09723.5 gi|325967728|ref|YP_004243920.1| - 0.0046 16.8 4.1 0.031 14.2 2.9 2.0 1 1 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|325967728|ref|YP_004243920.1| - 0.007 16.1 3.8 0.83 9.5 0.2 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain HypA PF01155.14 gi|325967728|ref|YP_004243920.1| - 0.0073 15.9 0.1 0.01 15.5 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|325967728|ref|YP_004243920.1| - 0.0093 15.4 0.9 0.82 9.2 0.1 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger IBR PF01485.16 gi|325967728|ref|YP_004243920.1| - 0.0095 15.7 1.0 0.016 15.0 0.7 1.4 1 1 0 1 1 1 1 IBR domain zf-C2H2 PF00096.21 gi|325967728|ref|YP_004243920.1| - 0.011 16.0 6.3 0.37 11.2 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type TFIIS_C PF01096.13 gi|325967728|ref|YP_004243920.1| - 0.012 15.2 1.9 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-DNL PF05180.7 gi|325967728|ref|YP_004243920.1| - 0.012 15.2 0.2 0.014 15.0 0.1 1.1 1 0 0 1 1 1 0 DNL zinc finger PhnA_Zn_Ribbon PF08274.7 gi|325967728|ref|YP_004243920.1| - 0.013 15.2 1.3 0.24 11.2 0.9 2.3 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF2387 PF09526.5 gi|325967728|ref|YP_004243920.1| - 0.018 14.9 0.0 1.4 8.9 0.0 2.1 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-TFIIB PF13453.1 gi|325967728|ref|YP_004243920.1| - 0.021 13.9 0.1 2.5 7.3 0.0 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger Prok-RING_1 PF14446.1 gi|325967728|ref|YP_004243920.1| - 0.022 14.4 0.4 6.8 6.5 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-FCS PF06467.9 gi|325967728|ref|YP_004243920.1| - 0.023 14.3 0.6 1.6 8.4 0.0 2.3 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif TF_Zn_Ribbon PF08271.7 gi|325967728|ref|YP_004243920.1| - 0.035 13.4 5.3 0.53 9.6 3.8 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding T4_baseplate PF12322.3 gi|325967728|ref|YP_004243920.1| - 0.049 12.8 0.2 1.6 7.9 0.1 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein DZR PF12773.2 gi|325967728|ref|YP_004243920.1| - 0.049 13.4 1.2 0.15 11.8 0.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon ADK_lid PF05191.9 gi|325967728|ref|YP_004243920.1| - 0.055 13.1 1.5 5.3 6.8 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-CSL PF05207.8 gi|325967728|ref|YP_004243920.1| - 0.057 12.9 2.2 1.5 8.3 1.8 2.1 1 1 1 2 2 2 0 CSL zinc finger Zn_Tnp_IS1 PF03811.8 gi|325967728|ref|YP_004243920.1| - 0.059 12.8 0.4 3.7 7.1 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-C3HC4_3 PF13920.1 gi|325967728|ref|YP_004243920.1| - 0.07 12.8 0.5 4 7.1 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DNA_RNApol_7kD PF03604.8 gi|325967728|ref|YP_004243920.1| - 0.071 12.5 0.6 8 6.0 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Sgf11 PF08209.6 gi|325967728|ref|YP_004243920.1| - 0.071 12.4 1.1 0.89 8.9 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) FYVE PF01363.16 gi|325967728|ref|YP_004243920.1| - 0.075 12.9 0.2 3.4 7.6 0.0 2.1 2 0 0 2 2 2 0 FYVE zinc finger zf-tcix PF14952.1 gi|325967728|ref|YP_004243920.1| - 0.088 12.1 2.8 4 6.8 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Nudix_N_2 PF14803.1 gi|325967728|ref|YP_004243920.1| - 0.095 12.4 1.1 6.6 6.5 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal PyrI_C PF02748.10 gi|325967728|ref|YP_004243920.1| - 0.097 12.1 0.2 0.41 10.1 0.0 1.9 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Terminase_GpA PF05876.7 gi|325967728|ref|YP_004243920.1| - 0.11 10.8 0.1 0.14 10.4 0.1 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DUF983 PF06170.7 gi|325967728|ref|YP_004243920.1| - 0.15 12.2 0.1 8.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF3268 PF11672.3 gi|325967728|ref|YP_004243920.1| - 0.17 11.9 0.6 9.6 6.3 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zf-RING_2 PF13639.1 gi|325967728|ref|YP_004243920.1| - 0.17 11.7 1.4 0.37 10.6 1.0 1.5 1 1 0 1 1 1 0 Ring finger domain Acetone_carb_G PF08882.6 gi|325967728|ref|YP_004243920.1| - 0.18 11.8 1.2 1.6 8.7 0.1 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Ogr_Delta PF04606.7 gi|325967728|ref|YP_004243920.1| - 0.19 11.4 2.1 10 5.8 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger YhfH PF14149.1 gi|325967728|ref|YP_004243920.1| - 0.21 11.3 1.7 8.7 6.2 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein OrfB_Zn_ribbon PF07282.6 gi|325967728|ref|YP_004243920.1| - 0.24 11.0 2.7 2.9 7.6 1.9 2.0 1 1 2 3 3 3 0 Putative transposase DNA-binding domain DUF4379 PF14311.1 gi|325967728|ref|YP_004243920.1| - 0.31 10.8 2.4 6 6.7 0.2 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4379) DNA_ligase_ZBD PF03119.11 gi|325967728|ref|YP_004243920.1| - 0.32 10.7 3.0 7.1 6.4 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-HYPF PF07503.7 gi|325967728|ref|YP_004243920.1| - 0.35 10.3 2.0 1.1 8.6 0.1 2.0 2 0 0 2 2 2 0 HypF finger FANCL_C PF11793.3 gi|325967728|ref|YP_004243920.1| - 0.95 9.4 3.4 7.8 6.5 0.1 2.1 1 1 1 2 2 2 0 FANCL C-terminal domain DUF1610 PF07754.6 gi|325967728|ref|YP_004243920.1| - 7.1 6.8 8.9 2.9 8.0 1.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TAN PF11640.3 gi|325967729|ref|YP_004243921.1| - 0.05 13.3 0.4 0.11 12.1 0.2 1.8 1 1 0 1 1 1 0 Telomere-length maintenance and DNA damage repair DUF2770 PF10968.3 gi|325967729|ref|YP_004243921.1| - 5.2 6.8 7.4 43 3.8 0.0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF2770) Ldh_1_N PF00056.18 gi|325967730|ref|YP_004243922.1| - 7.8e-40 135.9 0.4 1.1e-39 135.4 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|325967730|ref|YP_004243922.1| - 7.2e-25 87.7 0.0 1.7e-24 86.5 0.0 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|325967730|ref|YP_004243922.1| - 0.00024 20.5 0.7 0.00054 19.3 0.5 1.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_4 PF02056.11 gi|325967730|ref|YP_004243922.1| - 0.00039 19.7 0.3 0.0012 18.2 0.1 1.9 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase Sua5_yciO_yrdC PF01300.13 gi|325967731|ref|YP_004243923.1| - 2.5e-53 179.9 0.0 4.3e-53 179.2 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|325967731|ref|YP_004243923.1| - 3.9e-25 88.3 0.0 5.5e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding DUF59 PF01883.14 gi|325967732|ref|YP_004243924.1| - 4.7e-14 52.1 0.1 6.3e-14 51.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 NolV PF06635.7 gi|325967733|ref|YP_004243925.1| - 0.043 12.9 0.0 0.045 12.9 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein NolV RDM PF11002.3 gi|325967733|ref|YP_004243925.1| - 0.073 12.7 0.6 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 RFPL defining motif (RDM) TrmB PF01978.14 gi|325967734|ref|YP_004243926.1| - 8.4e-10 38.2 2.2 9.6e-10 38.0 0.3 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|325967734|ref|YP_004243926.1| - 5.5e-09 35.5 0.2 1.8e-08 33.9 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|325967734|ref|YP_004243926.1| - 2.6e-08 33.3 0.3 6.6e-08 32.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|325967734|ref|YP_004243926.1| - 3.1e-07 29.8 0.1 5.6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|325967734|ref|YP_004243926.1| - 1.7e-06 27.5 1.0 3.1e-06 26.7 0.1 1.9 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|325967734|ref|YP_004243926.1| - 4e-06 26.1 0.1 1.1e-05 24.6 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|325967734|ref|YP_004243926.1| - 1.4e-05 24.6 0.1 2.6e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|325967734|ref|YP_004243926.1| - 1.5e-05 24.9 1.7 5.1e-05 23.3 0.1 2.4 2 1 1 3 3 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|325967734|ref|YP_004243926.1| - 2e-05 24.1 0.0 3.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|325967734|ref|YP_004243926.1| - 4.8e-05 22.7 1.4 7.4e-05 22.1 0.2 1.9 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|325967734|ref|YP_004243926.1| - 0.00014 21.5 0.1 0.00032 20.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|325967734|ref|YP_004243926.1| - 0.00024 20.3 0.4 0.00047 19.4 0.0 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 Penicillinase_R PF03965.11 gi|325967734|ref|YP_004243926.1| - 0.00028 20.9 0.2 0.0004 20.4 0.2 1.2 1 0 0 1 1 1 1 Penicillinase repressor Phage_rep_org_N PF09681.5 gi|325967734|ref|YP_004243926.1| - 0.00074 19.0 1.8 0.27 10.8 0.1 2.2 1 1 1 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) HrcA_DNA-bdg PF03444.10 gi|325967734|ref|YP_004243926.1| - 0.00079 18.8 0.8 0.0057 16.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_27 PF13463.1 gi|325967734|ref|YP_004243926.1| - 0.00099 19.3 0.0 0.0022 18.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|325967734|ref|YP_004243926.1| - 0.001 18.8 0.0 0.0019 17.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|325967734|ref|YP_004243926.1| - 0.0012 18.2 3.1 0.0085 15.5 0.8 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|325967734|ref|YP_004243926.1| - 0.0014 18.1 0.0 0.0024 17.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.1 gi|325967734|ref|YP_004243926.1| - 0.0016 18.4 0.2 0.0029 17.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|325967734|ref|YP_004243926.1| - 0.0024 17.7 0.2 0.0084 15.9 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.14 gi|325967734|ref|YP_004243926.1| - 0.0025 17.7 0.2 0.0053 16.6 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain KorB PF08535.5 gi|325967734|ref|YP_004243926.1| - 0.0029 17.7 0.3 1.1 9.4 0.0 2.3 1 1 1 2 2 2 1 KorB domain HTH_29 PF13551.1 gi|325967734|ref|YP_004243926.1| - 0.0029 17.7 0.0 0.0051 16.9 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix HTH_DeoR PF08220.7 gi|325967734|ref|YP_004243926.1| - 0.013 14.9 0.0 0.051 13.1 0.0 2.0 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_40 PF14493.1 gi|325967734|ref|YP_004243926.1| - 0.014 15.5 0.1 0.034 14.3 0.1 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.8 gi|325967734|ref|YP_004243926.1| - 0.014 14.9 0.3 0.67 9.6 0.0 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus LexA_DNA_bind PF01726.11 gi|325967734|ref|YP_004243926.1| - 0.017 14.7 0.2 0.043 13.3 0.0 1.8 2 0 0 2 2 1 0 LexA DNA binding domain DUF2250 PF10007.4 gi|325967734|ref|YP_004243926.1| - 0.017 15.0 0.6 0.81 9.6 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_ECF PF07638.6 gi|325967734|ref|YP_004243926.1| - 0.028 14.1 0.1 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor RP-C PF03428.8 gi|325967734|ref|YP_004243926.1| - 0.028 13.8 0.1 0.053 12.9 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain IF2_N PF04760.10 gi|325967734|ref|YP_004243926.1| - 0.043 13.4 0.6 0.38 10.4 0.1 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF4423 PF14394.1 gi|325967734|ref|YP_004243926.1| - 0.046 13.2 0.2 0.094 12.2 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_CodY PF08222.6 gi|325967734|ref|YP_004243926.1| - 0.057 12.7 0.1 0.27 10.5 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_28 PF13518.1 gi|325967734|ref|YP_004243926.1| - 0.06 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma54_DBD PF04552.8 gi|325967734|ref|YP_004243926.1| - 0.073 12.5 0.2 0.14 11.6 0.0 1.7 2 0 0 2 2 2 0 Sigma-54, DNA binding domain PCI PF01399.22 gi|325967734|ref|YP_004243926.1| - 0.4 11.0 3.5 0.33 11.3 0.8 1.9 2 0 0 2 2 2 0 PCI domain OCD_Mu_crystall PF02423.10 gi|325967735|ref|YP_004243927.1| - 3.6e-71 239.5 2.6 4.2e-71 239.2 1.8 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|325967735|ref|YP_004243927.1| - 1.2e-11 44.8 0.6 2e-11 44.1 0.4 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|325967735|ref|YP_004243927.1| - 0.002 18.5 0.2 0.0046 17.3 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.14 gi|325967735|ref|YP_004243927.1| - 0.0048 15.9 1.1 0.0048 15.9 0.8 1.9 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Saccharop_dh PF03435.13 gi|325967735|ref|YP_004243927.1| - 0.011 14.7 0.2 0.018 14.0 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|325967735|ref|YP_004243927.1| - 0.016 15.5 0.0 0.03 14.6 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF3027 PF11228.3 gi|325967736|ref|YP_004243928.1| - 0.004 16.8 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3027) C1_3 PF07649.7 gi|325967736|ref|YP_004243928.1| - 0.012 15.6 2.3 0.027 14.4 0.1 2.5 2 0 0 2 2 2 0 C1-like domain zf-B_box PF00643.19 gi|325967736|ref|YP_004243928.1| - 0.066 13.1 2.6 0.13 12.1 0.1 2.4 2 1 0 2 2 2 0 B-box zinc finger C1_2 PF03107.11 gi|325967736|ref|YP_004243928.1| - 0.18 11.9 0.3 0.18 11.9 0.2 2.3 2 0 0 2 2 2 0 C1 domain Prok-RING_1 PF14446.1 gi|325967736|ref|YP_004243928.1| - 0.4 10.4 4.0 7.6 6.3 0.1 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|325967736|ref|YP_004243928.1| - 6 6.6 7.0 2.3e+02 1.6 5.1 2.4 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Abhydrolase_5 PF12695.2 gi|325967737|ref|YP_004243929.1| - 1.5e-18 66.9 0.0 1.9e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|325967737|ref|YP_004243929.1| - 2.8e-14 53.5 0.0 4e-14 53.0 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|325967737|ref|YP_004243929.1| - 5e-12 45.4 0.0 7.5e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_2 PF02230.11 gi|325967737|ref|YP_004243929.1| - 5.7e-08 32.4 0.1 0.0008 18.9 0.0 2.6 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Abhydrolase_1 PF00561.15 gi|325967737|ref|YP_004243929.1| - 6.8e-08 32.3 0.0 0.00079 19.0 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|325967737|ref|YP_004243929.1| - 1.1e-06 28.4 0.0 2e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|325967737|ref|YP_004243929.1| - 7.1e-06 25.8 0.1 3.3e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Lipase_3 PF01764.20 gi|325967737|ref|YP_004243929.1| - 1e-05 25.1 0.0 1.4e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Lipase (class 3) FSH1 PF03959.8 gi|325967737|ref|YP_004243929.1| - 1.3e-05 24.7 0.0 3.4e-05 23.3 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) PhoPQ_related PF10142.4 gi|325967737|ref|YP_004243929.1| - 1.5e-05 23.7 0.0 1.9e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein DLH PF01738.13 gi|325967737|ref|YP_004243929.1| - 2.6e-05 23.6 0.0 0.0007 18.9 0.0 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family UPF0227 PF05728.7 gi|325967737|ref|YP_004243929.1| - 8.8e-05 22.3 0.1 0.00057 19.6 0.1 2.1 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) PGAP1 PF07819.8 gi|325967737|ref|YP_004243929.1| - 0.00013 21.6 0.0 0.003 17.1 0.0 2.2 2 0 0 2 2 2 1 PGAP1-like protein Ser_hydrolase PF06821.8 gi|325967737|ref|YP_004243929.1| - 0.00017 21.2 0.0 0.00026 20.6 0.0 1.4 1 1 0 1 1 1 1 Serine hydrolase Esterase PF00756.15 gi|325967737|ref|YP_004243929.1| - 0.00023 20.6 0.0 0.00037 20.0 0.0 1.3 1 0 0 1 1 1 1 Putative esterase DUF2974 PF11187.3 gi|325967737|ref|YP_004243929.1| - 0.00025 20.4 0.0 0.00032 20.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Peptidase_S15 PF02129.13 gi|325967737|ref|YP_004243929.1| - 0.00037 19.9 0.0 0.18 11.2 0.0 2.1 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Thioesterase PF00975.15 gi|325967737|ref|YP_004243929.1| - 0.0027 17.9 0.0 0.0041 17.3 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain PE-PPE PF08237.6 gi|325967737|ref|YP_004243929.1| - 0.0092 15.4 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 1 PE-PPE domain LIP PF03583.9 gi|325967737|ref|YP_004243929.1| - 0.015 14.5 0.0 0.026 13.7 0.0 1.4 1 0 0 1 1 1 0 Secretory lipase DUF2048 PF09752.4 gi|325967737|ref|YP_004243929.1| - 0.027 13.3 0.0 0.043 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) DUF2305 PF10230.4 gi|325967737|ref|YP_004243929.1| - 0.086 12.2 0.0 1.5 8.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2305) DUF829 PF05705.9 gi|325967737|ref|YP_004243929.1| - 0.11 12.1 0.0 0.47 10.1 0.0 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) AA_kinase PF00696.23 gi|325967739|ref|YP_004243931.1| - 7.1e-27 94.5 0.0 8.6e-27 94.2 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.12 gi|325967740|ref|YP_004243932.1| - 1.9e-47 161.3 0.8 5.4e-47 159.8 0.5 1.7 1 1 0 1 1 1 1 Polyprenyl synthetase Annexin PF00191.15 gi|325967740|ref|YP_004243932.1| - 0.72 9.8 4.8 22 5.0 0.2 3.5 3 1 0 3 3 3 0 Annexin Thiolase_N PF00108.18 gi|325967741|ref|YP_004243933.1| - 3.6e-79 265.4 0.0 4.7e-79 265.0 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|325967741|ref|YP_004243933.1| - 2.1e-42 143.4 0.8 5.4e-42 142.0 0.1 2.1 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|325967741|ref|YP_004243933.1| - 3.9e-05 23.2 0.2 7.4e-05 22.3 0.2 1.4 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain eRF1_2 PF03464.10 gi|325967742|ref|YP_004243934.1| - 2e-29 102.5 0.0 3.4e-29 101.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_1 PF03463.10 gi|325967742|ref|YP_004243934.1| - 1.3e-16 60.3 0.0 2.4e-16 59.5 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|325967742|ref|YP_004243934.1| - 2.5e-06 27.7 1.5 4.9e-05 23.5 1.0 2.6 1 1 0 1 1 1 1 eRF1 domain 3 Ribosomal_L7Ae PF01248.21 gi|325967742|ref|YP_004243934.1| - 2.4e-05 23.7 0.1 5.5e-05 22.5 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SpoU_sub_bind PF08032.7 gi|325967742|ref|YP_004243934.1| - 0.0003 20.8 0.2 0.013 15.6 0.0 3.0 3 0 0 3 3 3 1 RNA 2'-O ribose methyltransferase substrate binding ThiS PF02597.15 gi|325967743|ref|YP_004243935.1| - 1e-14 54.6 0.0 1.2e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|325967743|ref|YP_004243935.1| - 4.9e-07 29.7 0.2 5.2e-07 29.6 0.1 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS PF02597.15 gi|325967744|ref|YP_004243936.1| - 1.4e-08 35.0 0.0 1.6e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|325967744|ref|YP_004243936.1| - 0.00044 20.3 0.0 0.00045 20.2 0.0 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.16 gi|325967744|ref|YP_004243936.1| - 0.02 14.7 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 TGS domain DUF1641 PF07849.6 gi|325967745|ref|YP_004243937.1| - 1.6e-15 56.3 0.8 4.1e-15 55.0 0.5 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) ATP-synt PF00231.14 gi|325967745|ref|YP_004243937.1| - 0.017 14.5 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 ATP synthase Pyr_redox_2 PF07992.9 gi|325967746|ref|YP_004243938.1| - 1.2e-08 35.0 0.0 2.2e-07 30.9 0.0 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|325967746|ref|YP_004243938.1| - 0.036 13.1 0.2 0.1 11.6 0.0 1.6 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.1 gi|325967746|ref|YP_004243938.1| - 0.075 12.8 0.0 15 5.2 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|325967746|ref|YP_004243938.1| - 0.077 13.4 0.1 3.1 8.2 0.0 2.8 2 2 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF1344 PF07076.6 gi|325967746|ref|YP_004243938.1| - 0.15 11.6 1.3 12 5.5 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1344) MacB_PCD PF12704.2 gi|325967747|ref|YP_004243939.1| - 1.1e-23 84.1 4.8 1.1e-23 84.1 3.3 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|325967747|ref|YP_004243939.1| - 3e-20 72.2 21.4 3e-20 72.2 14.9 2.6 3 0 0 3 3 3 1 FtsX-like permease family Bacteriocin_IIc PF10439.4 gi|325967747|ref|YP_004243939.1| - 0.78 9.9 4.4 13 5.9 0.7 2.3 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide UPF0004 PF00919.15 gi|325967748|ref|YP_004243940.1| - 3.1e-22 78.2 0.0 5.6e-22 77.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 Radical_SAM PF04055.16 gi|325967748|ref|YP_004243940.1| - 1.1e-21 77.7 0.0 1.9e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily TRAM PF01938.15 gi|325967748|ref|YP_004243940.1| - 0.0077 15.9 0.0 0.02 14.6 0.0 1.7 1 0 0 1 1 1 1 TRAM domain DUF1921 PF09081.5 gi|325967749|ref|YP_004243941.1| - 0.019 14.9 0.1 0.055 13.4 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1921) ATP_bind_1 PF03029.12 gi|325967750|ref|YP_004243942.1| - 1.1e-59 201.8 0.3 1.3e-59 201.6 0.2 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|325967750|ref|YP_004243942.1| - 7.1e-09 35.3 0.1 0.0034 16.8 0.0 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|325967750|ref|YP_004243942.1| - 5.2e-08 32.5 0.1 8.7e-08 31.7 0.1 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.22 gi|325967750|ref|YP_004243942.1| - 5.2e-07 29.2 0.3 2.8e-05 23.6 0.1 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain SRP54 PF00448.17 gi|325967750|ref|YP_004243942.1| - 9.5e-07 28.4 0.0 7.2e-05 22.3 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|325967750|ref|YP_004243942.1| - 2.9e-06 26.8 0.2 0.094 12.2 0.0 3.2 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|325967750|ref|YP_004243942.1| - 4.5e-06 26.4 0.0 1.4e-05 24.7 0.0 1.8 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|325967750|ref|YP_004243942.1| - 1.5e-05 24.8 0.4 0.0055 16.4 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_10 PF12846.2 gi|325967750|ref|YP_004243942.1| - 3.7e-05 23.3 0.0 4.1e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain Miro PF08477.8 gi|325967750|ref|YP_004243942.1| - 8e-05 23.1 0.1 0.076 13.5 0.0 2.2 2 0 0 2 2 2 1 Miro-like protein AAA_22 PF13401.1 gi|325967750|ref|YP_004243942.1| - 0.00015 21.8 0.0 0.00089 19.4 0.0 2.4 1 1 1 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|325967750|ref|YP_004243942.1| - 0.00025 21.0 0.1 0.00072 19.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase ArgK PF03308.11 gi|325967750|ref|YP_004243942.1| - 0.00033 19.5 0.1 0.0015 17.3 0.0 2.0 3 0 0 3 3 2 1 ArgK protein AAA_16 PF13191.1 gi|325967750|ref|YP_004243942.1| - 0.00037 20.5 0.0 0.0013 18.7 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|325967750|ref|YP_004243942.1| - 0.00038 21.2 0.0 0.00071 20.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|325967750|ref|YP_004243942.1| - 0.00039 19.5 0.0 0.00057 19.0 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase NACHT PF05729.7 gi|325967750|ref|YP_004243942.1| - 0.00055 19.6 0.0 0.0014 18.3 0.0 1.6 2 0 0 2 2 1 1 NACHT domain DUF87 PF01935.12 gi|325967750|ref|YP_004243942.1| - 0.0006 19.6 0.6 0.0028 17.5 0.0 2.1 2 1 0 2 2 2 1 Domain of unknown function DUF87 KTI12 PF08433.5 gi|325967750|ref|YP_004243942.1| - 0.0008 18.6 0.1 0.049 12.8 0.0 2.2 2 0 0 2 2 2 1 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|325967750|ref|YP_004243942.1| - 0.0014 18.2 0.0 0.0027 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|325967750|ref|YP_004243942.1| - 0.0024 17.5 0.0 0.013 15.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|325967750|ref|YP_004243942.1| - 0.0028 16.6 0.0 0.0091 14.9 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein PhoH PF02562.11 gi|325967750|ref|YP_004243942.1| - 0.003 16.8 0.1 0.1 11.8 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_24 PF13479.1 gi|325967750|ref|YP_004243942.1| - 0.0059 16.2 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|325967750|ref|YP_004243942.1| - 0.0064 16.7 0.0 0.018 15.3 0.0 1.8 2 0 0 2 2 2 1 ABC transporter PIN PF01850.16 gi|325967750|ref|YP_004243942.1| - 0.0082 16.4 0.1 0.091 13.0 0.0 2.1 2 0 0 2 2 2 1 PIN domain SRPRB PF09439.5 gi|325967750|ref|YP_004243942.1| - 0.009 15.2 0.1 2.7 7.1 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit KaiC PF06745.8 gi|325967750|ref|YP_004243942.1| - 0.01 14.9 0.7 0.047 12.8 0.3 2.1 1 1 0 1 1 1 0 KaiC AAA_18 PF13238.1 gi|325967750|ref|YP_004243942.1| - 0.013 15.8 0.1 0.025 14.8 0.0 1.7 2 1 0 2 2 1 0 AAA domain Ras PF00071.17 gi|325967750|ref|YP_004243942.1| - 0.013 14.9 0.2 1.5 8.1 0.0 2.3 2 0 0 2 2 2 0 Ras family AAA_28 PF13521.1 gi|325967750|ref|YP_004243942.1| - 0.014 15.4 0.2 0.034 14.0 0.1 1.9 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|325967750|ref|YP_004243942.1| - 0.016 14.3 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|325967750|ref|YP_004243942.1| - 0.017 15.0 0.0 0.041 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|325967750|ref|YP_004243942.1| - 0.018 13.9 0.0 0.036 12.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DUF258 PF03193.11 gi|325967750|ref|YP_004243942.1| - 0.02 14.1 0.0 1.5 8.0 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function, DUF258 Septin PF00735.13 gi|325967750|ref|YP_004243942.1| - 0.023 13.7 0.3 0.036 13.0 0.2 1.5 1 1 0 1 1 1 0 Septin TrwB_AAD_bind PF10412.4 gi|325967750|ref|YP_004243942.1| - 0.025 13.2 0.0 0.039 12.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KAP_NTPase PF07693.9 gi|325967750|ref|YP_004243942.1| - 0.025 13.5 0.0 0.057 12.4 0.0 1.5 1 1 1 2 2 2 0 KAP family P-loop domain Arch_ATPase PF01637.13 gi|325967750|ref|YP_004243942.1| - 0.027 14.1 0.0 0.034 13.8 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase Sigma54_activ_2 PF14532.1 gi|325967750|ref|YP_004243942.1| - 0.027 14.5 0.0 0.85 9.6 0.0 2.7 2 1 1 3 3 3 0 Sigma-54 interaction domain DUF2075 PF09848.4 gi|325967750|ref|YP_004243942.1| - 0.028 13.3 0.1 0.21 10.5 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|325967750|ref|YP_004243942.1| - 0.029 14.1 0.0 0.064 13.0 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Herpes_Helicase PF02689.9 gi|325967750|ref|YP_004243942.1| - 0.038 11.7 0.0 0.068 10.9 0.0 1.3 1 0 0 1 1 1 0 Helicase AAA_29 PF13555.1 gi|325967750|ref|YP_004243942.1| - 0.041 13.4 0.0 0.11 11.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Thymidylate_kin PF02223.12 gi|325967750|ref|YP_004243942.1| - 0.046 13.0 0.0 0.082 12.2 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_33 PF13671.1 gi|325967750|ref|YP_004243942.1| - 0.05 13.4 0.1 0.071 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|325967750|ref|YP_004243942.1| - 0.075 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Arf PF00025.16 gi|325967750|ref|YP_004243942.1| - 0.081 12.1 1.3 6.7 5.9 0.2 2.5 2 1 0 2 2 2 0 ADP-ribosylation factor family FtsK_SpoIIIE PF01580.13 gi|325967750|ref|YP_004243942.1| - 0.13 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MFS_1 PF07690.11 gi|325967751|ref|YP_004243943.1| - 2.4e-09 36.3 34.6 5.9e-07 28.5 1.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MerC PF03203.9 gi|325967751|ref|YP_004243943.1| - 0.68 10.3 7.3 2.9 8.2 2.9 2.8 1 1 1 2 2 2 0 MerC mercury resistance protein DUF3792 PF12670.2 gi|325967752|ref|YP_004243944.1| - 0.016 15.0 4.4 0.016 15.0 3.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3792) DUF2781 PF10914.3 gi|325967752|ref|YP_004243944.1| - 1.5 8.6 8.9 5.8 6.6 1.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2781) CoA_trans PF01144.18 gi|325967754|ref|YP_004243946.1| - 1.1e-15 57.4 0.0 3.3e-15 55.8 0.0 1.7 1 1 0 1 1 1 1 Coenzyme A transferase CoA_trans PF01144.18 gi|325967755|ref|YP_004243947.1| - 1.4e-26 93.0 0.0 1.7e-26 92.7 0.0 1.1 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hydro PF02550.10 gi|325967755|ref|YP_004243947.1| - 0.026 14.2 0.0 0.054 13.2 0.0 1.6 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain ThiS PF02597.15 gi|325967756|ref|YP_004243948.1| - 6.9e-13 48.8 0.0 8e-13 48.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|325967756|ref|YP_004243948.1| - 0.018 14.8 0.1 0.15 11.9 0.1 2.0 2 0 0 2 2 2 0 TGS domain SLBB PF10531.4 gi|325967756|ref|YP_004243948.1| - 0.063 13.1 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 SLBB domain Urm1 PF09138.6 gi|325967756|ref|YP_004243948.1| - 0.07 13.2 0.0 0.087 12.9 0.0 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) CARD PF00619.16 gi|325967757|ref|YP_004243949.1| - 0.14 11.9 0.0 3.6 7.4 0.0 2.0 2 0 0 2 2 2 0 Caspase recruitment domain NUDIX PF00293.23 gi|325967758|ref|YP_004243950.1| - 9.3e-23 80.3 0.0 1e-22 80.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Acylphosphatase PF00708.13 gi|325967759|ref|YP_004243951.1| - 7.3e-31 106.1 0.1 8e-31 106.0 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|325967759|ref|YP_004243951.1| - 0.0084 15.7 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1115) Cuticle_1 PF08140.6 gi|325967759|ref|YP_004243951.1| - 0.067 13.0 0.1 7.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Crustacean cuticle protein repeat Pkinase PF00069.20 gi|325967760|ref|YP_004243952.1| - 2.2e-37 128.6 0.0 3.1e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|325967760|ref|YP_004243952.1| - 9.5e-23 80.5 0.0 1.3e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Pox_ser-thr_kin PF05445.6 gi|325967760|ref|YP_004243952.1| - 0.0012 17.7 0.1 0.0031 16.3 0.0 1.6 1 0 0 1 1 1 1 Poxvirus serine/threonine protein kinase APH PF01636.18 gi|325967760|ref|YP_004243952.1| - 0.048 13.3 0.1 0.41 10.3 0.0 2.0 1 1 1 2 2 2 0 Phosphotransferase enzyme family Kinase-like PF14531.1 gi|325967760|ref|YP_004243952.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Kinase-like DUF1418 PF07214.7 gi|325967760|ref|YP_004243952.1| - 5.8 6.6 7.7 0.73 9.5 1.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1418) FHA PF00498.21 gi|325967761|ref|YP_004243953.1| - 1.9e-16 59.9 0.1 2.8e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 FHA domain Ribosomal_S26e PF01283.14 gi|325967762|ref|YP_004243954.1| - 4.8e-33 113.7 2.0 6e-33 113.4 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.12 gi|325967762|ref|YP_004243954.1| - 0.0096 15.6 0.3 1.8 8.3 0.0 2.3 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.1 gi|325967762|ref|YP_004243954.1| - 0.034 13.8 0.2 6.6 6.5 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal PRP21_like_P PF12230.3 gi|325967762|ref|YP_004243954.1| - 0.07 12.6 2.0 0.17 11.3 0.0 1.9 2 0 0 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein zf-ribbon_3 PF13248.1 gi|325967762|ref|YP_004243954.1| - 0.32 10.2 1.8 0.72 9.1 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Radical_SAM PF04055.16 gi|325967763|ref|YP_004243955.1| - 1.9e-17 63.9 0.1 3.7e-16 59.7 0.0 2.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|325967763|ref|YP_004243955.1| - 1.3e-05 25.3 0.0 2.6e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Auto_anti-p27 PF06677.7 gi|325967763|ref|YP_004243955.1| - 0.09 12.5 0.2 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|325967763|ref|YP_004243955.1| - 0.13 12.1 0.2 0.13 12.1 0.1 2.8 3 1 0 3 3 3 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|325967763|ref|YP_004243955.1| - 3.2 7.8 8.2 13 5.8 0.0 3.5 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Molybdopterin PF00384.17 gi|325967765|ref|YP_004243957.1| - 2e-10 40.0 0.0 3.7e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|325967765|ref|YP_004243957.1| - 4.2e-06 26.5 0.0 3.7e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain DAO PF01266.19 gi|325967766|ref|YP_004243958.1| - 2.4e-59 201.0 0.0 2.8e-59 200.8 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|325967766|ref|YP_004243958.1| - 6.5e-09 35.2 0.3 1.7e-08 33.8 0.0 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|325967766|ref|YP_004243958.1| - 3.9e-08 32.5 0.3 1.4e-07 30.7 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|325967766|ref|YP_004243958.1| - 6.1e-07 29.3 0.2 1.3e-06 28.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|325967766|ref|YP_004243958.1| - 4.9e-06 25.8 1.6 1.7e-05 24.0 0.4 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|325967766|ref|YP_004243958.1| - 5.3e-06 25.7 0.0 6.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|325967766|ref|YP_004243958.1| - 1.1e-05 25.4 2.1 0.00015 21.6 1.4 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|325967766|ref|YP_004243958.1| - 0.00024 20.0 1.0 0.0006 18.7 0.1 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|325967766|ref|YP_004243958.1| - 0.00025 19.6 0.8 0.002 16.6 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein ApbA PF02558.11 gi|325967766|ref|YP_004243958.1| - 0.00066 19.1 0.1 0.0013 18.2 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.1 gi|325967766|ref|YP_004243958.1| - 0.00088 19.3 0.4 0.002 18.2 0.3 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|325967766|ref|YP_004243958.1| - 0.0011 19.1 0.1 0.16 12.2 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|325967766|ref|YP_004243958.1| - 0.0018 17.9 0.2 0.0029 17.3 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|325967766|ref|YP_004243958.1| - 0.0022 18.3 2.5 0.02 15.3 0.2 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|325967766|ref|YP_004243958.1| - 0.0027 17.8 0.1 0.0084 16.2 0.1 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|325967766|ref|YP_004243958.1| - 0.004 16.9 0.2 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding GDI PF00996.13 gi|325967766|ref|YP_004243958.1| - 0.0081 14.5 0.1 0.018 13.3 0.0 1.6 2 0 0 2 2 2 1 GDP dissociation inhibitor Lycopene_cycl PF05834.7 gi|325967766|ref|YP_004243958.1| - 0.0089 14.9 0.1 0.015 14.2 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|325967766|ref|YP_004243958.1| - 0.017 14.2 0.3 1 8.4 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|325967766|ref|YP_004243958.1| - 0.028 14.4 0.1 0.079 12.9 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain ThiF PF00899.16 gi|325967766|ref|YP_004243958.1| - 0.036 13.8 0.2 0.036 13.8 0.2 2.1 2 0 0 2 2 2 0 ThiF family DHH PF01368.15 gi|325967766|ref|YP_004243958.1| - 0.039 13.6 0.0 0.096 12.3 0.0 1.7 1 0 0 1 1 1 0 DHH family NAD_Gly3P_dh_N PF01210.18 gi|325967766|ref|YP_004243958.1| - 0.063 13.0 0.1 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Saccharop_dh PF03435.13 gi|325967766|ref|YP_004243958.1| - 0.12 11.3 0.5 0.2 10.6 0.3 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Amidohydro_3 PF07969.6 gi|325967767|ref|YP_004243959.1| - 2.1e-86 290.7 0.0 2.4e-86 290.5 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|325967767|ref|YP_004243959.1| - 8.8e-08 31.8 0.0 2.8e-07 30.2 0.0 1.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|325967767|ref|YP_004243959.1| - 7.1e-07 29.1 0.6 0.019 14.6 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|325967767|ref|YP_004243959.1| - 1.5e-06 28.4 0.2 0.001 19.1 0.1 3.2 2 2 0 2 2 2 2 Amidohydrolase DUF1435 PF07256.7 gi|325967768|ref|YP_004243960.1| - 0.021 14.8 2.3 0.032 14.2 1.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1435) Acetyltransf_1 PF00583.19 gi|325967769|ref|YP_004243961.1| - 5.5e-17 61.5 0.2 1.6e-16 60.1 0.0 1.9 3 0 0 3 3 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|325967769|ref|YP_004243961.1| - 1.5e-09 37.9 0.0 3.1e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|325967769|ref|YP_004243961.1| - 4.7e-09 36.5 0.1 1.5e-08 34.9 0.1 1.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|325967769|ref|YP_004243961.1| - 7e-08 32.3 0.0 1.2e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|325967769|ref|YP_004243961.1| - 6.6e-06 25.7 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|325967769|ref|YP_004243961.1| - 1.6e-05 24.8 0.0 3.3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|325967769|ref|YP_004243961.1| - 1.7e-05 24.8 0.0 6.3e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|325967769|ref|YP_004243961.1| - 2.8e-05 24.1 0.0 4.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|325967769|ref|YP_004243961.1| - 0.00021 21.1 0.0 0.0085 15.9 0.0 2.3 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|325967769|ref|YP_004243961.1| - 0.0051 16.4 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Josephin PF02099.12 gi|325967769|ref|YP_004243961.1| - 0.084 12.4 0.1 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Josephin MobB PF03205.9 gi|325967770|ref|YP_004243962.1| - 4.5e-08 32.9 0.2 8e-08 32.0 0.2 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Clp1 PF06807.9 gi|325967770|ref|YP_004243962.1| - 0.00081 19.2 6.7 0.0012 18.6 1.5 3.1 3 1 0 3 3 3 1 Pre-mRNA cleavage complex II protein Clp1 GTP_EFTU PF00009.22 gi|325967770|ref|YP_004243962.1| - 0.021 14.2 0.3 0.038 13.4 0.2 1.3 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain CbiA PF01656.18 gi|325967770|ref|YP_004243962.1| - 0.029 13.7 1.2 0.058 12.7 0.2 1.9 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|325967770|ref|YP_004243962.1| - 0.036 14.2 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|325967770|ref|YP_004243962.1| - 0.041 13.3 0.1 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain DUF4147 PF13660.1 gi|325967771|ref|YP_004243963.1| - 5.9e-76 254.7 0.1 8.2e-76 254.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|325967771|ref|YP_004243963.1| - 9e-27 93.3 1.7 9e-27 93.3 1.2 2.0 2 0 0 2 2 2 1 MOFRL family Translin PF01997.11 gi|325967772|ref|YP_004243964.1| - 1e-33 116.6 1.8 1.2e-33 116.4 1.2 1.0 1 0 0 1 1 1 1 Translin family DBINO PF13892.1 gi|325967772|ref|YP_004243964.1| - 0.032 14.2 0.1 0.43 10.6 0.0 2.1 2 0 0 2 2 2 0 DNA-binding domain DUF2935 PF11155.3 gi|325967772|ref|YP_004243964.1| - 0.032 14.3 0.0 0.18 11.9 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) Seryl_tRNA_N PF02403.17 gi|325967772|ref|YP_004243964.1| - 0.072 13.1 3.2 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain VASP_tetra PF08776.6 gi|325967772|ref|YP_004243964.1| - 0.099 11.9 0.8 0.31 10.3 0.3 2.0 2 0 0 2 2 2 0 VASP tetramerisation domain HisKA PF00512.20 gi|325967772|ref|YP_004243964.1| - 0.34 10.9 1.7 1.8 8.6 0.3 2.2 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Nitroreductase PF00881.19 gi|325967773|ref|YP_004243965.1| - 4.2e-20 72.1 0.0 5.4e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF2258 PF10015.4 gi|325967774|ref|YP_004243966.1| - 1.9e-23 82.0 3.7 2.8e-23 81.4 1.6 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) BHD_3 PF10405.4 gi|325967774|ref|YP_004243966.1| - 0.15 11.8 0.0 2.3 7.9 0.0 2.2 2 1 0 2 2 2 0 Rad4 beta-hairpin domain 3 DUF211 PF02680.9 gi|325967775|ref|YP_004243967.1| - 1.5e-31 108.0 3.3 1.7e-31 107.8 2.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 DUF2148 PF09918.4 gi|325967775|ref|YP_004243967.1| - 0.034 13.8 0.4 0.061 13.0 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) BRCT PF00533.21 gi|325967775|ref|YP_004243967.1| - 0.088 12.9 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain VIT1 PF01988.14 gi|325967776|ref|YP_004243968.1| - 0.071 12.5 16.0 0.26 10.7 0.3 2.0 1 1 1 2 2 2 0 VIT family SID-1_RNA_chan PF13965.1 gi|325967776|ref|YP_004243968.1| - 1.4 7.0 6.2 1.8 6.6 4.3 1.1 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Trm112p PF03966.11 gi|325967777|ref|YP_004243969.1| - 3.6e-13 49.6 1.9 3.6e-13 49.6 1.4 1.5 2 0 0 2 2 2 1 Trm112p-like protein zf-ribbon_3 PF13248.1 gi|325967777|ref|YP_004243969.1| - 5.1 6.4 6.1 0.32 10.2 0.2 2.0 3 0 0 3 3 3 0 zinc-ribbon domain FAD_binding_2 PF00890.19 gi|325967778|ref|YP_004243970.1| - 8.3e-109 364.1 0.0 9.9e-109 363.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|325967778|ref|YP_004243970.1| - 1.7e-45 154.0 0.0 2.7e-45 153.3 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|325967778|ref|YP_004243970.1| - 1.4e-06 28.3 0.3 0.0015 18.4 0.2 3.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|325967778|ref|YP_004243970.1| - 0.0093 15.0 0.7 1 8.4 0.1 3.1 3 0 0 3 3 3 1 Thi4 family DAO PF01266.19 gi|325967778|ref|YP_004243970.1| - 0.028 13.3 0.2 0.077 11.8 0.0 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|325967778|ref|YP_004243970.1| - 0.08 11.7 0.5 1 8.1 0.4 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|325967778|ref|YP_004243970.1| - 0.12 12.3 0.3 0.37 10.8 0.2 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Reo_sigmaC PF04582.7 gi|325967779|ref|YP_004243971.1| - 2e-05 23.9 6.5 0.031 13.4 0.2 2.1 2 0 0 2 2 2 2 Reovirus sigma C capsid protein Laminin_I PF06008.9 gi|325967779|ref|YP_004243971.1| - 0.00097 18.5 7.8 0.00097 18.5 5.4 2.5 2 1 0 2 2 2 1 Laminin Domain I TBPIP PF07106.8 gi|325967779|ref|YP_004243971.1| - 0.002 17.7 55.3 0.038 13.5 6.9 4.2 1 1 3 4 4 4 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Seryl_tRNA_N PF02403.17 gi|325967779|ref|YP_004243971.1| - 0.0048 16.8 15.5 0.0048 16.8 10.8 5.0 2 2 3 5 5 5 2 Seryl-tRNA synthetase N-terminal domain IncA PF04156.9 gi|325967779|ref|YP_004243971.1| - 0.0088 15.6 14.2 0.0088 15.6 9.8 3.2 1 1 0 2 2 1 1 IncA protein Baculo_PEP_C PF04513.7 gi|325967779|ref|YP_004243971.1| - 0.0091 15.8 20.0 0.12 12.1 3.0 3.8 2 2 2 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus FliJ PF02050.11 gi|325967779|ref|YP_004243971.1| - 0.011 15.7 43.0 0.021 14.8 6.6 3.6 2 2 1 3 3 3 0 Flagellar FliJ protein HrpB7 PF09486.5 gi|325967779|ref|YP_004243971.1| - 0.015 15.2 0.5 0.015 15.2 0.3 2.4 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) HsbA PF12296.3 gi|325967779|ref|YP_004243971.1| - 0.019 14.8 1.1 8.5 6.2 0.0 2.8 2 1 0 2 2 2 0 Hydrophobic surface binding protein A MCPsignal PF00015.16 gi|325967779|ref|YP_004243971.1| - 0.021 14.3 17.5 0.075 12.5 0.2 3.2 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain WEMBL PF05701.6 gi|325967779|ref|YP_004243971.1| - 0.044 12.2 50.4 1.6 7.0 35.0 2.8 1 1 0 1 1 1 0 Weak chloroplast movement under blue light AAA_13 PF13166.1 gi|325967779|ref|YP_004243971.1| - 0.045 12.2 45.6 0.14 10.6 9.9 2.4 1 1 1 2 2 2 0 AAA domain Rsm22 PF09243.5 gi|325967779|ref|YP_004243971.1| - 0.073 12.1 2.0 0.21 10.5 1.4 1.7 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 DUF3584 PF12128.3 gi|325967779|ref|YP_004243971.1| - 0.091 10.0 45.9 0.017 12.5 9.0 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF3584) DUF4201 PF13870.1 gi|325967779|ref|YP_004243971.1| - 0.096 12.1 59.5 0.13 11.6 8.3 4.2 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) Filament PF00038.16 gi|325967779|ref|YP_004243971.1| - 0.12 11.8 49.7 3.2 7.1 34.5 3.0 1 1 0 1 1 1 0 Intermediate filament protein ATG16 PF08614.6 gi|325967779|ref|YP_004243971.1| - 0.12 12.1 48.2 1.2 8.9 3.6 3.7 2 2 1 3 3 3 0 Autophagy protein 16 (ATG16) Laminin_II PF06009.7 gi|325967779|ref|YP_004243971.1| - 0.12 12.0 38.1 0.24 11.1 7.8 3.4 2 1 1 3 3 3 0 Laminin Domain II Metal_resist PF13801.1 gi|325967779|ref|YP_004243971.1| - 0.13 12.2 6.2 11 6.0 0.0 4.1 1 1 1 4 4 4 0 Heavy-metal resistance Nup54 PF13874.1 gi|325967779|ref|YP_004243971.1| - 0.25 10.9 40.8 0.085 12.5 2.8 4.6 2 2 3 5 5 5 0 Nucleoporin complex subunit 54 NPV_P10 PF05531.7 gi|325967779|ref|YP_004243971.1| - 0.3 11.3 18.4 2.2 8.5 1.5 4.5 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|325967779|ref|YP_004243971.1| - 0.33 10.8 64.4 0.21 11.4 14.8 4.3 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3618 PF12277.3 gi|325967779|ref|YP_004243971.1| - 0.36 10.9 4.6 32 4.6 0.1 4.2 4 0 0 4 4 3 0 Protein of unknown function (DUF3618) TPR_MLP1_2 PF07926.7 gi|325967779|ref|YP_004243971.1| - 0.42 10.3 55.7 0.018 14.7 10.0 4.3 3 2 1 4 4 3 0 TPR/MLP1/MLP2-like protein FadR_C PF07840.7 gi|325967779|ref|YP_004243971.1| - 0.42 10.2 6.0 0.65 9.6 1.1 3.1 2 1 0 2 2 2 0 FadR C-terminal domain Hrs_helical PF12210.3 gi|325967779|ref|YP_004243971.1| - 0.49 10.6 28.3 0.41 10.9 2.2 5.2 2 2 4 6 6 6 0 Hepatocyte growth factor-regulated tyrosine kinase substrate APG6 PF04111.7 gi|325967779|ref|YP_004243971.1| - 0.57 9.1 55.0 0.18 10.8 4.0 4.0 1 1 2 4 4 4 0 Autophagy protein Apg6 Mnd1 PF03962.10 gi|325967779|ref|YP_004243971.1| - 0.94 9.1 47.1 0.046 13.3 8.7 3.7 1 1 1 3 3 3 0 Mnd1 family Spc7 PF08317.6 gi|325967779|ref|YP_004243971.1| - 1.1 7.9 55.1 0.096 11.3 11.3 3.1 1 1 2 4 4 4 0 Spc7 kinetochore protein Lip_prot_lig_C PF10437.4 gi|325967779|ref|YP_004243971.1| - 1.1 8.9 7.4 9.1 6.0 0.1 3.9 3 1 0 3 3 3 0 Bacterial lipoate protein ligase C-terminus DUF972 PF06156.8 gi|325967779|ref|YP_004243971.1| - 1.3 9.3 51.0 1.2 9.5 4.3 5.0 2 2 3 5 5 5 0 Protein of unknown function (DUF972) DUF4140 PF13600.1 gi|325967779|ref|YP_004243971.1| - 1.9 9.0 32.4 0.13 12.6 1.9 5.5 2 2 3 5 5 5 0 N-terminal domain of unknown function (DUF4140) DUF148 PF02520.12 gi|325967779|ref|YP_004243971.1| - 1.9 8.3 30.1 0.2 11.4 3.9 4.3 2 2 2 4 4 4 0 Domain of unknown function DUF148 DUF948 PF06103.6 gi|325967779|ref|YP_004243971.1| - 2.2 8.2 21.2 4.1 7.3 0.1 4.6 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Bacillus_HBL PF05791.6 gi|325967779|ref|YP_004243971.1| - 2.5 7.4 32.9 0.32 10.3 3.2 4.1 2 1 2 4 4 3 0 Bacillus haemolytic enterotoxin (HBL) HCR PF07111.7 gi|325967779|ref|YP_004243971.1| - 2.9 5.7 39.7 0.0049 14.9 6.2 2.6 2 1 0 2 2 2 0 Alpha helical coiled-coil rod protein (HCR) STAT_alpha PF01017.15 gi|325967779|ref|YP_004243971.1| - 3 7.5 37.1 1.4 8.5 6.7 3.9 1 1 2 3 3 3 0 STAT protein, all-alpha domain DUF3450 PF11932.3 gi|325967779|ref|YP_004243971.1| - 3.6 6.7 28.8 0.36 10.0 2.1 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF3450) RTBV_P46 PF06216.6 gi|325967779|ref|YP_004243971.1| - 5.8 5.6 21.7 0.13 11.0 3.0 3.1 2 2 1 3 3 3 0 Rice tungro bacilliform virus P46 protein Carbpep_Y_N PF05388.6 gi|325967779|ref|YP_004243971.1| - 6.1 7.0 7.2 1.2 9.3 0.3 3.0 2 2 1 3 3 3 0 Carboxypeptidase Y pro-peptide Atg14 PF10186.4 gi|325967779|ref|YP_004243971.1| - 9.9 5.0 57.4 1.8 7.4 14.6 3.7 1 1 3 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 DUF373 PF04123.8 gi|325967780|ref|YP_004243972.1| - 4.3e-80 269.3 16.4 5.1e-80 269.0 11.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) UPF0020 PF01170.13 gi|325967781|ref|YP_004243973.1| - 7.3e-15 54.9 0.0 3.2e-14 52.8 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|325967781|ref|YP_004243973.1| - 8.2e-12 45.1 0.0 2.2e-11 43.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|325967781|ref|YP_004243973.1| - 2.2e-11 43.6 0.0 1e-08 34.9 0.0 2.2 2 0 0 2 2 2 2 DNA methylase MethyltransfD12 PF02086.10 gi|325967781|ref|YP_004243973.1| - 0.0005 19.6 0.3 0.0021 17.5 0.0 1.9 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|325967781|ref|YP_004243973.1| - 0.0053 16.1 0.0 0.026 13.9 0.0 2.0 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|325967781|ref|YP_004243973.1| - 0.023 15.1 0.0 0.072 13.5 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325967781|ref|YP_004243973.1| - 0.054 13.0 0.0 0.3 10.6 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.11 gi|325967781|ref|YP_004243973.1| - 0.062 12.3 0.0 1.8 7.5 0.0 2.0 1 1 0 1 1 1 0 N-6 DNA Methylase OMPdecase PF00215.19 gi|325967782|ref|YP_004243974.1| - 9.6e-22 77.4 1.0 1.2e-21 77.1 0.7 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|325967782|ref|YP_004243974.1| - 0.015 14.4 1.0 0.04 13.0 0.7 1.9 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.14 gi|325967782|ref|YP_004243974.1| - 0.049 13.1 0.6 0.2 11.1 0.4 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain Prefoldin PF02996.12 gi|325967783|ref|YP_004243975.1| - 0.0026 17.4 2.3 0.47 10.1 0.4 2.1 2 0 0 2 2 2 2 Prefoldin subunit MCPsignal PF00015.16 gi|325967783|ref|YP_004243975.1| - 0.0066 16.0 0.3 0.019 14.5 0.0 1.7 2 0 0 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain ZapA PF05164.8 gi|325967783|ref|YP_004243975.1| - 0.042 13.8 0.3 0.11 12.4 0.2 1.8 1 1 0 1 1 1 0 Cell division protein ZapA STAT_alpha PF01017.15 gi|325967783|ref|YP_004243975.1| - 0.046 13.4 0.1 0.059 13.0 0.1 1.1 1 0 0 1 1 1 0 STAT protein, all-alpha domain DivIC PF04977.10 gi|325967783|ref|YP_004243975.1| - 0.047 13.1 0.1 2.6 7.5 0.1 2.1 2 0 0 2 2 2 0 Septum formation initiator TMF_TATA_bd PF12325.3 gi|325967783|ref|YP_004243975.1| - 0.052 13.2 0.8 1.4 8.6 0.1 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding YtxH PF12732.2 gi|325967783|ref|YP_004243975.1| - 0.061 13.6 0.7 2.4 8.6 0.1 2.1 2 0 0 2 2 2 0 YtxH-like protein NPV_P10 PF05531.7 gi|325967783|ref|YP_004243975.1| - 0.097 12.9 1.6 0.76 10.0 0.2 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.4 gi|325967783|ref|YP_004243975.1| - 0.11 12.6 1.2 1.5 8.9 0.1 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PLAC9 PF15205.1 gi|325967783|ref|YP_004243975.1| - 0.13 12.5 0.2 8.1 6.7 0.0 2.5 2 1 0 2 2 2 0 Placenta-specific protein 9 DUF342 PF03961.8 gi|325967783|ref|YP_004243975.1| - 0.15 10.4 1.2 1.3 7.3 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Chordopox_A30L PF06015.7 gi|325967783|ref|YP_004243975.1| - 0.2 11.2 3.3 0.27 10.8 0.2 2.4 2 1 1 3 3 3 0 Chordopoxvirus A30L protein tRNA_NucTransf2 PF09249.6 gi|325967784|ref|YP_004243976.1| - 3e-41 139.8 0.0 6.5e-41 138.7 0.0 1.6 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|325967784|ref|YP_004243976.1| - 2.4e-10 40.6 0.0 7.5e-10 39.0 0.0 1.9 1 0 0 1 1 1 1 Nucleotidyltransferase domain RPN7 PF10602.4 gi|325967785|ref|YP_004243977.1| - 0.00079 18.8 0.2 0.004 16.5 0.1 2.3 2 0 0 2 2 2 1 26S proteasome subunit RPN7 TPR_12 PF13424.1 gi|325967785|ref|YP_004243977.1| - 0.0014 18.5 1.9 0.27 11.2 0.1 2.7 2 0 0 2 2 2 2 Tetratricopeptide repeat PMEI PF04043.10 gi|325967785|ref|YP_004243977.1| - 0.0019 18.1 0.2 0.0069 16.2 0.1 1.9 2 0 0 2 2 2 1 Plant invertase/pectin methylesterase inhibitor Sp100 PF03172.8 gi|325967785|ref|YP_004243977.1| - 0.043 13.7 1.8 0.12 12.3 0.0 2.5 3 0 0 3 3 3 0 Sp100 domain TFIIS_M PF07500.9 gi|325967785|ref|YP_004243977.1| - 0.09 12.8 0.3 6.9 6.7 0.0 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS), central domain TPR_11 PF13414.1 gi|325967785|ref|YP_004243977.1| - 0.6 9.7 3.8 4.2 7.0 0.4 3.5 2 2 0 2 2 2 0 TPR repeat NTP_transferase PF00483.18 gi|325967786|ref|YP_004243978.1| - 1.8e-40 138.7 0.0 2.3e-40 138.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|325967786|ref|YP_004243978.1| - 6.1e-15 53.9 14.1 4.1e-07 29.2 3.1 3.6 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|325967786|ref|YP_004243978.1| - 1.2e-07 31.1 5.2 0.0018 17.8 0.1 2.8 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|325967786|ref|YP_004243978.1| - 2.5e-07 30.9 0.0 3.4e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Ribosomal_S13 PF00416.17 gi|325967787|ref|YP_004243979.1| - 2.1e-26 92.4 0.0 2.6e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Acetyltransf_1 PF00583.19 gi|325967788|ref|YP_004243980.1| - 1.3e-10 41.0 0.1 2.2e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|325967788|ref|YP_004243980.1| - 3.5e-08 33.5 0.1 4.1e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|325967788|ref|YP_004243980.1| - 6.5e-07 29.4 0.1 1.4e-06 28.3 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|325967788|ref|YP_004243980.1| - 1.5e-06 28.2 0.0 2e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|325967788|ref|YP_004243980.1| - 2.6e-06 27.6 0.0 3.3e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|325967788|ref|YP_004243980.1| - 0.00018 21.1 0.0 0.00048 19.8 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|325967788|ref|YP_004243980.1| - 0.00049 19.9 0.0 0.0013 18.5 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|325967788|ref|YP_004243980.1| - 0.0013 18.5 0.0 0.0087 15.9 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain EMG1 PF03587.9 gi|325967789|ref|YP_004243981.1| - 1.9e-42 144.8 0.0 2.3e-42 144.6 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase SIS PF01380.17 gi|325967790|ref|YP_004243982.1| - 3.6e-44 149.5 0.5 4.8e-29 100.6 0.4 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|325967790|ref|YP_004243982.1| - 9.5e-27 93.5 0.0 1.9e-26 92.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|325967790|ref|YP_004243982.1| - 1.5e-22 79.6 0.0 3.5e-22 78.4 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|325967790|ref|YP_004243982.1| - 5.6e-21 74.6 0.1 9.3e-16 57.4 0.0 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|325967790|ref|YP_004243982.1| - 5e-06 26.2 1.0 5.3e-05 22.9 0.3 2.4 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.1 gi|325967790|ref|YP_004243982.1| - 0.00063 18.5 0.1 0.0011 17.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Hexapep PF00132.19 gi|325967791|ref|YP_004243983.1| - 3.5e-16 57.8 18.0 2.9e-06 26.5 0.1 5.6 5 1 0 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.18 gi|325967791|ref|YP_004243983.1| - 5e-14 52.2 0.0 6.7e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|325967791|ref|YP_004243983.1| - 2.1e-06 27.8 0.0 2.8e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|325967791|ref|YP_004243983.1| - 6.1e-06 25.6 18.2 0.009 15.5 0.0 5.2 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase Ribosomal_S21 PF01165.15 gi|325967791|ref|YP_004243983.1| - 0.089 12.2 0.0 9.4 5.7 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S21 RE_BstXI PF09552.5 gi|325967792|ref|YP_004243984.1| - 0.026 13.5 0.0 0.32 10.0 0.0 2.1 2 0 0 2 2 2 0 BstXI restriction endonuclease PCNA_N PF00705.13 gi|325967793|ref|YP_004243985.1| - 3.7e-14 52.3 0.0 1.6e-13 50.2 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|325967793|ref|YP_004243985.1| - 3.4e-05 23.7 1.2 0.00013 21.8 0.2 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain DUF1743 PF08489.6 gi|325967794|ref|YP_004243986.1| - 2e-22 79.1 0.0 4.5e-22 78.0 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) Zn_Tnp_IS1595 PF12760.2 gi|325967794|ref|YP_004243986.1| - 0.0056 16.4 0.6 0.013 15.2 0.4 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain IBR PF01485.16 gi|325967794|ref|YP_004243986.1| - 0.072 12.9 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 IBR domain DNA_RNApol_7kD PF03604.8 gi|325967794|ref|YP_004243986.1| - 0.13 11.7 2.0 0.32 10.5 1.4 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIB PF13453.1 gi|325967794|ref|YP_004243986.1| - 0.15 11.2 2.9 0.31 10.2 2.0 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.6 gi|325967794|ref|YP_004243986.1| - 0.16 11.6 1.7 0.34 10.6 1.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|325967794|ref|YP_004243986.1| - 3.4 7.2 7.1 7.6 6.1 4.9 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Trehalose_PPase PF02358.11 gi|325967795|ref|YP_004243987.1| - 2.9e-10 39.4 0.0 5.9e-10 38.4 0.0 1.4 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.7 gi|325967795|ref|YP_004243987.1| - 2.4e-05 24.0 0.1 8.1e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|325967795|ref|YP_004243987.1| - 0.0056 16.8 0.2 0.054 13.6 0.1 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase DUF521 PF04412.8 gi|325967796|ref|YP_004243988.1| - 1.2e-89 300.7 0.0 1.4e-89 300.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Acid_phosphat_B PF03767.9 gi|325967797|ref|YP_004243989.1| - 8.6e-09 35.1 0.0 1.1e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) HAD_2 PF13419.1 gi|325967797|ref|YP_004243989.1| - 2e-06 28.1 0.0 0.00041 20.6 0.0 2.1 1 1 1 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|325967797|ref|YP_004243989.1| - 2.2e-06 28.2 0.0 0.002 18.5 0.0 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|325967797|ref|YP_004243989.1| - 4.8e-05 23.1 0.0 0.00014 21.6 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2410 PF10307.4 gi|325967797|ref|YP_004243989.1| - 0.0014 18.0 0.0 0.0019 17.5 0.0 1.1 1 0 0 1 1 1 1 Hypothetical protein (DUF2410) DUF2608 PF11019.3 gi|325967797|ref|YP_004243989.1| - 0.0014 17.6 0.0 0.0041 16.1 0.0 1.8 2 1 0 2 2 2 1 Protein of unknown function (DUF2608) Hydrolase_3 PF08282.7 gi|325967797|ref|YP_004243989.1| - 0.0016 18.0 0.0 0.0037 16.8 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|325967797|ref|YP_004243989.1| - 0.0027 17.3 0.2 0.0033 17.0 0.1 1.0 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase PNK3P PF08645.6 gi|325967797|ref|YP_004243989.1| - 0.0051 16.2 0.0 0.0069 15.8 0.0 1.2 1 0 0 1 1 1 1 Polynucleotide kinase 3 phosphatase DUF910 PF06014.6 gi|325967797|ref|YP_004243989.1| - 0.024 14.5 0.0 4.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF910) 5-nucleotidase PF06189.7 gi|325967797|ref|YP_004243989.1| - 0.11 11.2 0.1 0.47 9.2 0.0 2.1 1 1 0 1 1 1 0 5'-nucleotidase GATase_3 PF07685.9 gi|325967798|ref|YP_004243990.1| - 6.2e-12 45.3 0.0 8.7e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|325967798|ref|YP_004243990.1| - 4.7e-07 29.3 0.7 4.1e-06 26.3 0.5 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|325967798|ref|YP_004243990.1| - 1.4e-06 28.0 0.8 0.015 14.8 0.0 2.4 1 1 0 2 2 2 2 AAA domain SNO PF01174.14 gi|325967798|ref|YP_004243990.1| - 0.044 13.4 0.0 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family AAA_31 PF13614.1 gi|325967798|ref|YP_004243990.1| - 0.048 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain GATase_5 PF13507.1 gi|325967798|ref|YP_004243990.1| - 0.082 11.8 0.0 0.23 10.3 0.0 1.6 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|325967798|ref|YP_004243990.1| - 0.15 11.3 0.0 0.34 10.1 0.0 1.5 1 0 0 1 1 1 0 Putative amidotransferase DNA_pol_B PF00136.16 gi|325967799|ref|YP_004243991.1| - 1.1e-82 278.3 0.0 1.5e-82 277.8 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|325967799|ref|YP_004243991.1| - 8.1e-33 113.6 0.3 1.7e-32 112.5 0.2 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|325967799|ref|YP_004243991.1| - 3.1e-05 23.8 0.1 8.3e-05 22.4 0.1 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|325967799|ref|YP_004243991.1| - 3.8e-05 23.3 0.0 7.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF2286 PF10051.4 gi|325967800|ref|YP_004243992.1| - 8.6e-38 129.1 4.6 1.1e-37 128.8 3.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Pox_ser-thr_kin PF05445.6 gi|325967800|ref|YP_004243992.1| - 0.0029 16.4 2.2 0.016 14.0 0.2 1.9 1 1 1 2 2 2 2 Poxvirus serine/threonine protein kinase CDP-OH_P_transf PF01066.16 gi|325967801|ref|YP_004243993.1| - 8.4e-14 51.7 16.6 4.2e-13 49.4 11.4 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Phage_tail_X PF05489.7 gi|325967801|ref|YP_004243993.1| - 0.12 11.8 0.0 0.44 10.0 0.0 1.9 2 0 0 2 2 2 0 Phage Tail Protein X ATP_synt_H PF05493.8 gi|325967801|ref|YP_004243993.1| - 3 7.9 6.7 0.79 9.8 0.3 2.7 2 1 1 3 3 3 0 ATP synthase subunit H PadR PF03551.9 gi|325967802|ref|YP_004243994.1| - 3.5e-09 36.2 0.1 5.4e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|325967802|ref|YP_004243994.1| - 0.006 16.2 0.4 0.019 14.6 0.2 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|325967802|ref|YP_004243994.1| - 0.032 13.9 0.1 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF3043 PF11241.3 gi|325967802|ref|YP_004243994.1| - 0.12 11.8 0.1 0.17 11.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) HTH_5 PF01022.15 gi|325967802|ref|YP_004243994.1| - 0.15 11.7 0.1 0.59 9.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family ELFV_dehydrog PF00208.16 gi|325967803|ref|YP_004243995.1| - 9.7e-72 241.4 0.6 1.2e-71 241.1 0.4 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|325967803|ref|YP_004243995.1| - 7.1e-53 177.6 0.0 1.2e-52 176.9 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|325967803|ref|YP_004243995.1| - 0.0034 16.5 0.1 0.0058 15.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|325967803|ref|YP_004243995.1| - 0.045 13.6 0.5 0.097 12.5 0.4 1.5 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lactamase_B PF00753.22 gi|325967804|ref|YP_004243996.1| - 6.5e-17 61.8 0.1 1.2e-16 60.9 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|325967804|ref|YP_004243996.1| - 4.6e-06 26.3 0.4 0.00089 18.8 0.3 2.1 1 1 0 2 2 2 2 Beta-lactamase superfamily domain Flavodoxin_1 PF00258.20 gi|325967804|ref|YP_004243996.1| - 0.0064 16.4 0.0 0.015 15.2 0.0 1.7 1 1 0 1 1 1 1 Flavodoxin Peripla_BP_6 PF13458.1 gi|325967804|ref|YP_004243996.1| - 0.0066 15.8 0.0 0.015 14.6 0.0 1.5 1 1 1 2 2 2 1 Periplasmic binding protein Lactamase_B_3 PF13483.1 gi|325967804|ref|YP_004243996.1| - 0.059 13.0 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain CTP_transf_2 PF01467.21 gi|325967805|ref|YP_004243997.1| - 6.6e-12 45.7 0.0 1.2e-11 44.9 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase Citrate_synt PF00285.16 gi|325967806|ref|YP_004243998.1| - 1.7e-136 454.6 0.0 1.9e-136 454.4 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase GlutR_dimer PF00745.15 gi|325967807|ref|YP_004243999.1| - 0.0081 16.0 1.8 0.0097 15.8 1.2 1.1 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain UxaC PF02614.9 gi|325967807|ref|YP_004243999.1| - 0.031 12.8 0.2 0.033 12.8 0.1 1.0 1 0 0 1 1 1 0 Glucuronate isomerase DUF1002 PF06207.6 gi|325967807|ref|YP_004243999.1| - 0.14 11.4 1.2 0.15 11.3 0.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1002) DUF91 PF01939.11 gi|325967809|ref|YP_004244001.1| - 1.8e-56 190.8 0.0 2.5e-56 190.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|325967809|ref|YP_004244001.1| - 0.00047 20.0 0.1 0.00068 19.5 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Mrr_cat PF04471.7 gi|325967809|ref|YP_004244001.1| - 0.0011 18.7 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease Cas_Cas4 PF01930.12 gi|325967809|ref|YP_004244001.1| - 0.0019 18.1 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 DUF1703 PF08011.6 gi|325967809|ref|YP_004244001.1| - 0.0023 17.6 0.0 0.0038 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1703) HSDR_N PF04313.9 gi|325967809|ref|YP_004244001.1| - 0.0042 16.8 0.0 0.0092 15.7 0.0 1.4 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N_2 PF13588.1 gi|325967809|ref|YP_004244001.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) UPF0102 PF02021.12 gi|325967809|ref|YP_004244001.1| - 0.046 13.6 0.1 0.12 12.3 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0102 DUF234 PF03008.9 gi|325967809|ref|YP_004244001.1| - 0.16 12.1 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function DUF95 PF01944.12 gi|325967810|ref|YP_004244002.1| - 0.0082 15.8 11.4 0.012 15.2 7.9 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF95 W_rich_C PF07483.6 gi|325967810|ref|YP_004244002.1| - 0.018 14.7 0.1 0.035 13.7 0.1 1.4 1 0 0 1 1 1 0 Tryptophan-rich Synechocystis species C-terminal domain Pribosyltran PF00156.22 gi|325967811|ref|YP_004244003.1| - 2.9e-20 72.2 0.1 5.4e-20 71.3 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|325967811|ref|YP_004244003.1| - 0.0065 15.6 0.0 0.0098 15.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase EamA PF00892.15 gi|325967812|ref|YP_004244004.1| - 1.9e-19 69.9 42.1 4.8e-11 42.7 12.6 2.7 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|325967812|ref|YP_004244004.1| - 0.00092 19.3 2.9 0.00092 19.3 2.0 4.2 1 1 2 4 4 4 2 Multidrug resistance efflux transporter PGPGW PF09656.5 gi|325967812|ref|YP_004244004.1| - 8.8 5.7 12.8 5.5 6.3 0.8 3.7 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) ERCC4 PF02732.10 gi|325967813|ref|YP_004244005.1| - 3.8e-16 59.1 0.0 5.9e-16 58.5 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.1 gi|325967813|ref|YP_004244005.1| - 3.7e-05 23.8 0.1 0.00013 22.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|325967813|ref|YP_004244005.1| - 0.0003 20.3 0.0 0.00086 18.8 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|325967813|ref|YP_004244005.1| - 0.0099 15.8 0.2 0.063 13.3 0.0 2.5 3 0 0 3 3 3 1 IMS family HHH motif 5_3_exonuc PF01367.15 gi|325967813|ref|YP_004244005.1| - 0.035 14.3 0.0 0.094 12.9 0.0 1.9 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.11 gi|325967813|ref|YP_004244005.1| - 0.056 13.5 0.0 4.3 7.5 0.0 2.5 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Peptidase_M20 PF01546.23 gi|325967813|ref|YP_004244005.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M20/M25/M40 TFIIS_C PF01096.13 gi|325967814|ref|YP_004244006.1| - 6.3e-06 25.7 1.3 7.9e-06 25.4 0.9 1.1 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|325967814|ref|YP_004244006.1| - 0.00082 19.3 0.3 0.51 10.4 0.1 2.1 2 0 0 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|325967814|ref|YP_004244006.1| - 0.002 17.2 4.3 0.11 11.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF929 PF06053.6 gi|325967814|ref|YP_004244006.1| - 0.0049 15.9 0.1 0.0049 15.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF929) DUF35_N PF12172.3 gi|325967814|ref|YP_004244006.1| - 0.012 15.5 0.9 0.23 11.4 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.1 gi|325967814|ref|YP_004244006.1| - 0.013 14.9 4.3 0.64 9.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|325967814|ref|YP_004244006.1| - 0.017 15.3 0.3 0.024 14.9 0.2 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.14 gi|325967814|ref|YP_004244006.1| - 0.019 14.4 0.5 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Elf1 PF05129.8 gi|325967814|ref|YP_004244006.1| - 0.042 13.5 0.6 0.045 13.4 0.4 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-DNA_Pol PF08996.5 gi|325967814|ref|YP_004244006.1| - 0.064 12.6 0.7 0.067 12.5 0.5 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Cys_rich_CPXG PF14255.1 gi|325967814|ref|YP_004244006.1| - 0.075 12.8 1.9 0.34 10.7 1.4 1.8 1 1 1 2 2 2 0 Cysteine-rich CPXCG UPF1_Zn_bind PF09416.5 gi|325967814|ref|YP_004244006.1| - 0.075 12.6 1.2 0.086 12.4 0.8 1.2 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) CpXC PF14353.1 gi|325967814|ref|YP_004244006.1| - 0.077 12.9 1.8 1.2 9.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_5 PF13719.1 gi|325967814|ref|YP_004244006.1| - 0.082 12.4 6.4 1.4 8.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|325967814|ref|YP_004244006.1| - 0.09 12.7 0.9 5.4 7.0 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|325967814|ref|YP_004244006.1| - 0.11 12.8 5.3 2.2 8.7 0.5 2.5 2 1 0 2 2 2 0 Zinc finger, C2H2 type DNA_RNApol_7kD PF03604.8 gi|325967814|ref|YP_004244006.1| - 0.17 11.4 4.5 7 6.2 1.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|325967814|ref|YP_004244006.1| - 0.24 11.0 7.5 2.9 7.6 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|325967814|ref|YP_004244006.1| - 0.31 11.4 3.2 9.3 6.8 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-DNL PF05180.7 gi|325967814|ref|YP_004244006.1| - 0.37 10.5 2.9 0.47 10.1 1.8 1.4 1 1 0 1 1 1 0 DNL zinc finger zf-FCS PF06467.9 gi|325967814|ref|YP_004244006.1| - 0.38 10.4 3.9 2.1 8.0 1.0 2.2 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF164 PF02591.10 gi|325967814|ref|YP_004244006.1| - 0.59 10.0 3.7 11 5.9 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-H2C2_2 PF13465.1 gi|325967814|ref|YP_004244006.1| - 0.59 10.5 3.1 21 5.6 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.4 gi|325967814|ref|YP_004244006.1| - 1.2 8.9 4.6 14 5.5 0.6 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|325967814|ref|YP_004244006.1| - 1.2 8.5 5.9 4.8 6.5 1.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Nudix_N_2 PF14803.1 gi|325967814|ref|YP_004244006.1| - 1.3 8.7 4.4 2.1 8.1 0.5 2.2 2 0 0 2 2 2 0 Nudix N-terminal TerY-C PF15616.1 gi|325967814|ref|YP_004244006.1| - 2.6 8.0 5.3 28 4.6 0.4 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain zf-BED PF02892.10 gi|325967814|ref|YP_004244006.1| - 9 6.1 8.1 8.4 6.2 2.0 2.2 2 1 0 2 2 2 0 BED zinc finger CBFD_NFYB_HMF PF00808.18 gi|325967815|ref|YP_004244007.1| - 5.1e-14 52.0 0.1 5.8e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|325967815|ref|YP_004244007.1| - 1.4e-11 44.3 0.0 1.6e-11 44.1 0.0 1.0 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|325967815|ref|YP_004244007.1| - 1.1e-05 25.5 0.1 1.3e-05 25.3 0.1 1.1 1 0 0 1 1 1 1 Kinetochore component CENP-S TAF PF02969.12 gi|325967815|ref|YP_004244007.1| - 3.3e-05 23.7 0.1 3.5e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) TIMELESS PF04821.9 gi|325967815|ref|YP_004244007.1| - 0.0033 16.7 0.0 0.0038 16.5 0.0 1.0 1 0 0 1 1 1 1 Timeless protein TFIID-18kDa PF02269.11 gi|325967815|ref|YP_004244007.1| - 0.0046 16.7 0.0 0.0052 16.5 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit PCP_red PF08369.5 gi|325967815|ref|YP_004244007.1| - 0.0055 16.5 0.5 0.085 12.7 0.1 2.1 2 0 0 2 2 2 1 Proto-chlorophyllide reductase 57 kD subunit Bromo_TP PF07524.8 gi|325967815|ref|YP_004244007.1| - 0.014 15.1 0.0 0.017 14.8 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated TFIID-31kDa PF02291.10 gi|325967815|ref|YP_004244007.1| - 0.014 15.1 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 Transcription initiation factor IID, 31kD subunit AdoMet_dc PF02675.10 gi|325967816|ref|YP_004244008.1| - 1.5e-31 108.3 0.0 1.8e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.1 gi|325967816|ref|YP_004244008.1| - 0.0036 17.0 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 Stage VI sporulation protein F Methyltransf_26 PF13659.1 gi|325967817|ref|YP_004244009.1| - 0.00056 19.9 0.0 0.00075 19.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|325967817|ref|YP_004244009.1| - 0.0021 17.2 0.0 0.0023 17.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.1 gi|325967817|ref|YP_004244009.1| - 0.0028 17.2 0.0 0.0035 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|325967817|ref|YP_004244009.1| - 0.0055 16.2 0.0 0.0072 15.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Diphthamide_syn PF01866.12 gi|325967818|ref|YP_004244010.1| - 5.4e-40 137.5 0.0 9.8e-40 136.6 0.0 1.3 1 1 0 1 1 1 1 Putative diphthamide synthesis protein Cpn60_TCP1 PF00118.19 gi|325967819|ref|YP_004244011.1| - 1e-168 561.9 7.0 1.2e-168 561.7 4.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PP-binding PF00550.20 gi|325967820|ref|YP_004244012.1| - 0.17 12.1 1.1 1.2 9.4 0.1 2.6 2 1 0 2 2 2 0 Phosphopantetheine attachment site NfeD PF01957.13 gi|325967820|ref|YP_004244012.1| - 0.44 10.6 0.1 0.44 10.6 0.1 2.6 2 1 1 3 3 3 0 NfeD-like C-terminal, partner-binding DUF4481 PF14800.1 gi|325967820|ref|YP_004244012.1| - 6 5.6 7.9 0.37 9.6 1.8 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4481) T2SE PF00437.15 gi|325967821|ref|YP_004244013.1| - 1.3e-18 66.8 0.3 2.1e-18 66.2 0.2 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|325967821|ref|YP_004244013.1| - 0.00051 19.5 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|325967821|ref|YP_004244013.1| - 0.00052 19.9 0.0 0.0023 17.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|325967821|ref|YP_004244013.1| - 0.0006 20.6 0.1 0.0059 17.4 0.0 2.5 2 1 1 3 3 3 1 AAA domain Mg_chelatase PF01078.16 gi|325967821|ref|YP_004244013.1| - 0.0025 17.0 0.0 0.0045 16.1 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|325967821|ref|YP_004244013.1| - 0.0029 17.7 0.2 0.011 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|325967821|ref|YP_004244013.1| - 0.0056 16.6 0.0 0.0094 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|325967821|ref|YP_004244013.1| - 0.0097 16.2 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.18 gi|325967821|ref|YP_004244013.1| - 0.012 15.5 2.0 0.023 14.6 0.2 2.5 3 1 0 3 3 3 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|325967821|ref|YP_004244013.1| - 0.012 15.9 0.6 0.081 13.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|325967821|ref|YP_004244013.1| - 0.013 15.8 0.4 0.14 12.5 0.0 2.7 3 0 0 3 3 2 0 AAA domain SRPRB PF09439.5 gi|325967821|ref|YP_004244013.1| - 0.024 13.8 0.5 0.28 10.3 0.0 2.5 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit AAA_16 PF13191.1 gi|325967821|ref|YP_004244013.1| - 0.025 14.5 0.0 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.1 gi|325967821|ref|YP_004244013.1| - 0.033 13.7 0.0 0.062 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|325967821|ref|YP_004244013.1| - 0.046 13.1 0.0 0.1 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain KTI12 PF08433.5 gi|325967821|ref|YP_004244013.1| - 0.056 12.6 0.1 0.3 10.2 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|325967821|ref|YP_004244013.1| - 0.075 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|325967821|ref|YP_004244013.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|325967821|ref|YP_004244013.1| - 0.19 10.8 0.0 0.35 9.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TF_Zn_Ribbon PF08271.7 gi|325967822|ref|YP_004244014.1| - 4.1e-08 32.3 2.6 1e-07 31.1 1.8 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|325967822|ref|YP_004244014.1| - 7.8e-05 22.0 1.4 0.00014 21.2 1.0 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain TFIIB PF00382.14 gi|325967822|ref|YP_004244014.1| - 9.6e-05 22.1 0.3 0.013 15.2 0.0 2.5 2 1 0 2 2 2 1 Transcription factor TFIIB repeat RRN7 PF11781.3 gi|325967822|ref|YP_004244014.1| - 0.00032 20.1 0.7 0.00066 19.1 0.5 1.5 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 HEPN PF05168.9 gi|325967822|ref|YP_004244014.1| - 0.0037 17.1 0.7 2.1 8.2 0.0 3.0 1 1 1 2 2 2 1 HEPN domain HTH_12 PF08461.5 gi|325967822|ref|YP_004244014.1| - 0.027 14.1 1.6 2.2 8.0 0.0 3.3 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|325967822|ref|YP_004244014.1| - 0.045 13.4 0.3 0.57 9.9 0.1 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|325967822|ref|YP_004244014.1| - 0.1 12.4 0.1 12 5.7 0.0 2.7 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain FaeA PF04703.7 gi|325967822|ref|YP_004244014.1| - 0.13 12.4 0.3 1.9 8.7 0.1 2.7 3 0 0 3 3 3 0 FaeA-like protein Lar_restr_allev PF14354.1 gi|325967822|ref|YP_004244014.1| - 0.16 12.2 0.1 0.39 11.0 0.1 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|325967822|ref|YP_004244014.1| - 0.88 8.8 3.1 4.7 6.5 2.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Lsm_C PF14894.1 gi|325967824|ref|YP_004244016.1| - 4.5e-26 90.1 0.6 4.5e-26 90.1 0.4 2.0 3 0 0 3 3 3 1 Lsm C-terminal LSM PF01423.17 gi|325967824|ref|YP_004244016.1| - 3.2e-08 33.0 1.5 7.3e-08 31.8 1.0 1.6 1 0 0 1 1 1 1 LSM domain Gemin6 PF06372.7 gi|325967824|ref|YP_004244016.1| - 8.9e-06 25.1 0.1 1.2e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Gemin6 protein SM-ATX PF14438.1 gi|325967824|ref|YP_004244016.1| - 5.2e-05 23.0 0.2 8.3e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain BPL_C PF02237.12 gi|325967824|ref|YP_004244016.1| - 0.009 15.6 0.1 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain Gemin7 PF11095.3 gi|325967824|ref|YP_004244016.1| - 0.066 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Gem-associated protein 7 (Gemin7) FAM70 PF14967.1 gi|325967824|ref|YP_004244016.1| - 0.15 11.2 0.1 0.25 10.4 0.1 1.4 1 1 0 1 1 1 0 FAM70 protein TGT PF01702.13 gi|325967825|ref|YP_004244017.1| - 1.5e-50 171.6 0.0 2.1e-50 171.2 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PAC2 PF09754.4 gi|325967826|ref|YP_004244018.1| - 2.1e-29 102.9 0.0 2.5e-29 102.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Ribosomal_S17e PF00833.13 gi|325967827|ref|YP_004244019.1| - 4.7e-21 74.7 0.0 5.1e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4290 PF14123.1 gi|325967827|ref|YP_004244019.1| - 0.021 14.0 0.1 0.026 13.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) HSP20 PF00011.16 gi|325967828|ref|YP_004244020.1| - 1.9e-12 46.9 2.2 7.6e-11 41.7 1.5 2.4 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|325967828|ref|YP_004244020.1| - 3.4e-06 27.5 0.6 5.3e-06 26.8 0.4 1.3 1 0 0 1 1 1 1 CS domain tRNA-synt_1g PF09334.6 gi|325967829|ref|YP_004244021.1| - 3.6e-144 480.2 0.0 4.5e-144 479.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|325967829|ref|YP_004244021.1| - 1.1e-13 50.0 0.1 9.2e-07 27.2 0.0 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|325967829|ref|YP_004244021.1| - 0.00044 20.0 0.3 0.0019 17.9 0.1 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|325967829|ref|YP_004244021.1| - 0.0025 17.0 0.0 0.083 12.0 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain TF_Zn_Ribbon PF08271.7 gi|325967829|ref|YP_004244021.1| - 0.071 12.4 3.6 0.38 10.1 1.6 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding tRNA-synt_1f PF01921.13 gi|325967829|ref|YP_004244021.1| - 0.072 11.7 0.1 0.82 8.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) zf-ribbon_3 PF13248.1 gi|325967829|ref|YP_004244021.1| - 0.22 10.7 7.6 3.3 7.0 2.8 2.9 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|325967829|ref|YP_004244021.1| - 0.35 10.7 4.9 1.2 8.9 3.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|325967829|ref|YP_004244021.1| - 1.3 8.6 9.2 5.5 6.6 0.1 3.4 3 1 0 3 3 3 0 zinc-ribbon domain dUTPase PF00692.14 gi|325967830|ref|YP_004244022.1| - 2.2e-13 49.7 0.1 2.6e-12 46.3 0.0 2.0 1 1 1 2 2 2 1 dUTPase Fucose_iso_C PF02952.12 gi|325967831|ref|YP_004244023.1| - 2.9e-06 26.8 0.5 1.2e-05 24.7 0.0 2.2 2 1 1 3 3 3 2 L-fucose isomerase, C-terminal domain AhpC-TSA PF00578.16 gi|325967832|ref|YP_004244024.1| - 3.1e-36 123.7 0.0 3.6e-36 123.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|325967832|ref|YP_004244024.1| - 2.7e-21 75.6 0.0 3.1e-21 75.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|325967832|ref|YP_004244024.1| - 0.045 13.8 0.0 0.1 12.7 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like DUF899 PF05988.7 gi|325967832|ref|YP_004244024.1| - 0.068 12.6 0.0 0.079 12.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|325967832|ref|YP_004244024.1| - 0.12 12.3 0.0 1.9 8.4 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Oxidored_molyb PF00174.14 gi|325967833|ref|YP_004244025.1| - 8.9e-44 148.8 0.0 1.2e-43 148.4 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TAT_signal PF10518.4 gi|325967833|ref|YP_004244025.1| - 0.0038 17.1 2.5 0.0075 16.1 1.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Spo0A_C PF08769.6 gi|325967833|ref|YP_004244025.1| - 0.065 13.1 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal DUF3670 PF12419.3 gi|325967833|ref|YP_004244025.1| - 0.14 11.5 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 SNF2 Helicase protein Ni_hydr_CYTB PF01292.15 gi|325967834|ref|YP_004244026.1| - 0.00034 20.0 2.2 0.00034 20.0 1.5 1.5 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|325967834|ref|YP_004244026.1| - 0.00095 18.5 2.6 0.00095 18.5 1.8 1.6 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF1691 PF07950.6 gi|325967834|ref|YP_004244026.1| - 0.083 12.8 0.6 0.13 12.2 0.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1691) Methyltrans_Mon PF14314.1 gi|325967835|ref|YP_004244027.1| - 0.13 10.1 0.3 0.13 10.0 0.2 1.0 1 0 0 1 1 1 0 Virus-capping methyltransferase UNC45-central PF11701.3 gi|325967836|ref|YP_004244028.1| - 0.03 13.9 0.1 0.037 13.6 0.0 1.1 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central EntA_Immun PF08951.5 gi|325967836|ref|YP_004244028.1| - 0.059 13.5 0.1 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 Enterocin A Immunity PAPS_reduct PF01507.14 gi|325967837|ref|YP_004244029.1| - 1.6e-40 138.7 0.0 5.5e-40 137.0 0.0 1.8 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|325967837|ref|YP_004244029.1| - 3.2e-07 30.6 7.6 6.6e-07 29.6 5.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325967837|ref|YP_004244029.1| - 2.6e-06 26.7 10.1 4.9e-05 22.7 1.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325967837|ref|YP_004244029.1| - 4.2e-06 26.4 22.6 0.0003 20.5 1.3 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325967837|ref|YP_004244029.1| - 7.7e-05 23.0 4.9 0.021 15.2 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|325967837|ref|YP_004244029.1| - 0.00013 21.7 10.3 0.024 14.4 1.6 2.3 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325967837|ref|YP_004244029.1| - 0.0002 21.1 2.0 0.0002 21.1 1.4 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|325967837|ref|YP_004244029.1| - 0.00023 21.8 7.1 0.037 14.7 0.4 3.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|325967837|ref|YP_004244029.1| - 0.00069 19.8 8.8 0.0081 16.4 6.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325967837|ref|YP_004244029.1| - 0.00088 19.5 6.2 0.1 12.9 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325967837|ref|YP_004244029.1| - 0.0013 18.5 1.1 0.0013 18.5 0.7 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|325967837|ref|YP_004244029.1| - 0.02 14.8 11.3 0.12 12.3 1.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|325967837|ref|YP_004244029.1| - 0.045 14.1 1.8 0.045 14.1 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF4483 PF14825.1 gi|325967837|ref|YP_004244029.1| - 0.25 10.9 0.0 0.38 10.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4483) Fer4_4 PF12800.2 gi|325967837|ref|YP_004244029.1| - 0.34 11.3 12.6 0.25 11.7 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|325967837|ref|YP_004244029.1| - 6.7 7.5 21.9 0.68 10.6 2.4 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|325967837|ref|YP_004244029.1| - 9.7 6.8 8.4 0.2 12.2 0.4 2.2 2 0 0 2 2 1 0 4Fe-4S single cluster domain Aminotran_5 PF00266.14 gi|325967839|ref|YP_004244031.1| - 1.1e-37 129.6 0.0 2.1e-37 128.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|325967839|ref|YP_004244031.1| - 2.4e-09 36.6 0.0 4.4e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|325967839|ref|YP_004244031.1| - 1.1e-05 24.6 0.0 2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|325967839|ref|YP_004244031.1| - 0.0071 14.6 0.0 0.0099 14.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme QueC PF06508.8 gi|325967840|ref|YP_004244032.1| - 1.1e-46 158.8 0.0 1.3e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|325967840|ref|YP_004244032.1| - 2.3e-12 46.7 0.0 6e-11 42.1 0.0 2.0 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.16 gi|325967840|ref|YP_004244032.1| - 1.3e-07 31.3 0.0 1.7e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|325967840|ref|YP_004244032.1| - 2.5e-06 27.0 0.0 5e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|325967840|ref|YP_004244032.1| - 3.7e-06 26.0 0.0 0.0039 16.1 0.0 2.1 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|325967840|ref|YP_004244032.1| - 1.7e-05 23.5 0.0 6.2e-05 21.7 0.0 1.9 2 1 0 2 2 2 1 tRNA methyl transferase Arginosuc_synth PF00764.14 gi|325967840|ref|YP_004244032.1| - 0.0024 17.0 0.0 0.0056 15.7 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase Mu-like_Com PF10122.4 gi|325967840|ref|YP_004244032.1| - 0.0065 15.4 0.1 0.027 13.5 0.0 1.9 2 0 0 2 2 2 1 Mu-like prophage protein Com ATP_bind_4 PF01902.12 gi|325967840|ref|YP_004244032.1| - 0.048 13.0 0.0 0.54 9.5 0.0 2.3 2 1 0 2 2 2 0 ATP-binding region PAPS_reduct PF01507.14 gi|325967840|ref|YP_004244032.1| - 0.059 13.1 0.0 0.34 10.7 0.0 2.0 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family MmgE_PrpD PF03972.9 gi|325967841|ref|YP_004244033.1| - 1.2e-129 432.4 0.0 1.4e-129 432.1 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family SDH_alpha PF03313.10 gi|325967841|ref|YP_004244033.1| - 0.079 11.9 1.2 0.2 10.6 0.4 1.9 2 0 0 2 2 2 0 Serine dehydratase alpha chain Topo-VIb_trans PF09239.6 gi|325967842|ref|YP_004244034.1| - 1e-62 210.3 0.1 1.7e-62 209.6 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|325967842|ref|YP_004244034.1| - 1.2e-13 50.7 0.0 2.8e-13 49.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|325967842|ref|YP_004244034.1| - 1.2e-11 44.4 0.0 3.8e-11 42.8 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF123 PF01986.11 gi|325967844|ref|YP_004244036.1| - 4e-18 65.3 0.0 5.4e-18 64.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 TruB_N PF01509.13 gi|325967846|ref|YP_004244038.1| - 4.6e-24 85.2 0.0 2.1e-14 53.9 0.0 3.3 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|325967846|ref|YP_004244038.1| - 1.7e-19 69.4 0.1 4.5e-19 68.1 0.0 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|325967846|ref|YP_004244038.1| - 6.2e-19 67.5 0.1 1.3e-18 66.4 0.1 1.6 1 0 0 1 1 1 1 PUA domain DUF3173 PF11372.3 gi|325967846|ref|YP_004244038.1| - 0.024 14.2 0.2 0.048 13.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) SIR2_2 PF13289.1 gi|325967846|ref|YP_004244038.1| - 0.036 13.9 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 SIR2-like domain Radical_SAM PF04055.16 gi|325967847|ref|YP_004244039.1| - 1.7e-23 83.6 0.0 3e-23 82.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|325967847|ref|YP_004244039.1| - 1.1e-09 38.4 0.4 3e-09 37.0 0.3 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|325967847|ref|YP_004244039.1| - 2.7e-08 34.0 0.0 5.9e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|325967847|ref|YP_004244039.1| - 6.9e-08 32.5 0.0 1.2e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain FR47 PF08445.5 gi|325967848|ref|YP_004244040.1| - 1.1e-12 47.5 0.0 1.8e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.19 gi|325967848|ref|YP_004244040.1| - 2.9e-10 40.0 0.0 7.1e-10 38.7 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|325967848|ref|YP_004244040.1| - 1.8e-05 24.7 0.0 0.00019 21.5 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|325967848|ref|YP_004244040.1| - 0.00068 19.7 0.0 0.0013 18.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|325967848|ref|YP_004244040.1| - 0.0022 18.1 0.0 0.0035 17.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|325967848|ref|YP_004244040.1| - 0.012 15.4 0.3 0.034 14.0 0.0 1.8 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.5 gi|325967848|ref|YP_004244040.1| - 0.11 12.5 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Acetyltransf_9 PF13527.1 gi|325967848|ref|YP_004244040.1| - 0.13 12.0 0.0 0.31 10.9 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FGGY_N PF00370.16 gi|325967849|ref|YP_004244041.1| - 7.4e-44 149.8 0.0 2e-43 148.4 0.0 1.7 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|325967849|ref|YP_004244041.1| - 1.7e-24 86.5 0.0 2.7e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|325967849|ref|YP_004244041.1| - 0.00029 20.2 0.4 0.28 10.4 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Pyridoxal_deC PF00282.14 gi|325967850|ref|YP_004244042.1| - 1.4e-27 96.0 0.0 7.1e-27 93.8 0.0 2.0 2 1 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|325967850|ref|YP_004244042.1| - 2.3e-13 49.6 0.0 4.8e-13 48.6 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|325967850|ref|YP_004244042.1| - 1.6e-08 33.9 0.0 2.9e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SLA_LP_auto_ag PF05889.8 gi|325967850|ref|YP_004244042.1| - 1.3e-05 23.8 0.5 4.3e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) GDC-P PF02347.11 gi|325967850|ref|YP_004244042.1| - 0.026 13.2 0.0 1.3 7.5 0.0 2.1 2 0 0 2 2 2 0 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|325967850|ref|YP_004244042.1| - 0.034 12.4 0.0 0.054 11.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|325967850|ref|YP_004244042.1| - 0.069 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase MFS_1 PF07690.11 gi|325967851|ref|YP_004244043.1| - 5.1e-18 64.8 11.0 5.9e-18 64.7 7.6 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325967851|ref|YP_004244043.1| - 0.0072 14.9 5.1 0.008 14.8 3.5 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter DUF4396 PF14342.1 gi|325967851|ref|YP_004244043.1| - 0.1 12.6 0.1 0.1 12.6 0.1 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4396) UNC-93 PF05978.11 gi|325967851|ref|YP_004244043.1| - 0.59 9.6 8.9 0.038 13.4 2.8 1.5 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 ABC2_membrane_5 PF13346.1 gi|325967851|ref|YP_004244043.1| - 1.9 7.7 11.9 0.83 8.9 6.7 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|325967853|ref|YP_004244045.1| - 1.1e-25 90.5 0.0 1.6e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325967853|ref|YP_004244045.1| - 2.3e-13 50.8 0.3 5.1e-10 39.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|325967853|ref|YP_004244045.1| - 8.5e-06 25.0 0.0 0.014 14.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|325967853|ref|YP_004244045.1| - 0.0002 21.5 0.1 0.0019 18.3 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|325967853|ref|YP_004244045.1| - 0.0002 21.0 0.0 0.00063 19.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|325967853|ref|YP_004244045.1| - 0.00022 21.6 0.0 0.00035 20.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325967853|ref|YP_004244045.1| - 0.00028 20.3 0.0 0.00055 19.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|325967853|ref|YP_004244045.1| - 0.0017 17.4 0.0 0.011 14.8 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin UPF0079 PF02367.12 gi|325967853|ref|YP_004244045.1| - 0.0019 17.8 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|325967853|ref|YP_004244045.1| - 0.002 18.2 0.2 0.012 15.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325967853|ref|YP_004244045.1| - 0.0023 17.9 0.1 0.0039 17.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|325967853|ref|YP_004244045.1| - 0.0048 16.3 0.2 0.0088 15.4 0.1 1.6 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|325967853|ref|YP_004244045.1| - 0.0055 16.4 0.1 0.012 15.2 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|325967853|ref|YP_004244045.1| - 0.0085 15.3 0.0 0.76 8.9 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|325967853|ref|YP_004244045.1| - 0.011 16.5 1.4 0.033 15.0 0.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|325967853|ref|YP_004244045.1| - 0.011 15.2 0.0 0.031 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|325967853|ref|YP_004244045.1| - 0.013 15.3 0.0 0.054 13.3 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_8 PF12780.2 gi|325967853|ref|YP_004244045.1| - 0.016 14.2 0.0 0.03 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 MutS_V PF00488.16 gi|325967853|ref|YP_004244045.1| - 0.018 14.4 0.0 0.044 13.1 0.0 1.8 1 1 0 1 1 1 0 MutS domain V AAA_14 PF13173.1 gi|325967853|ref|YP_004244045.1| - 0.019 14.8 0.1 0.049 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|325967853|ref|YP_004244045.1| - 0.025 13.7 0.0 0.04 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|325967853|ref|YP_004244045.1| - 0.027 13.3 0.1 0.11 11.4 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein SRP54 PF00448.17 gi|325967853|ref|YP_004244045.1| - 0.027 13.8 0.1 0.12 11.8 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain HTH_36 PF13730.1 gi|325967853|ref|YP_004244045.1| - 0.033 14.3 0.0 0.073 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Arch_ATPase PF01637.13 gi|325967853|ref|YP_004244045.1| - 0.051 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|325967853|ref|YP_004244045.1| - 0.055 12.9 0.3 0.14 11.6 0.2 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|325967853|ref|YP_004244045.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|325967853|ref|YP_004244045.1| - 0.063 12.6 0.1 3.4 7.0 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|325967853|ref|YP_004244045.1| - 0.067 12.8 0.2 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 NACHT domain DUF3584 PF12128.3 gi|325967853|ref|YP_004244045.1| - 0.094 10.0 0.0 0.12 9.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ABC_ATPase PF09818.4 gi|325967853|ref|YP_004244045.1| - 0.094 11.2 0.3 0.23 10.0 0.1 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NTPase_1 PF03266.10 gi|325967853|ref|YP_004244045.1| - 0.099 12.3 0.1 0.32 10.6 0.0 1.8 2 0 0 2 2 1 0 NTPase AAA_18 PF13238.1 gi|325967853|ref|YP_004244045.1| - 0.11 12.7 0.2 0.77 10.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|325967853|ref|YP_004244045.1| - 0.17 11.4 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.19 gi|325967854|ref|YP_004244046.1| - 4.8e-15 55.2 29.5 4.8e-15 55.2 20.5 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|325967854|ref|YP_004244046.1| - 5.2e-12 45.4 34.4 5.2e-12 45.4 23.8 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein MFS_1 PF07690.11 gi|325967855|ref|YP_004244047.1| - 1.5e-25 89.6 57.2 2.6e-21 75.7 24.4 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|325967855|ref|YP_004244047.1| - 0.0011 18.7 2.5 0.0011 18.7 1.7 3.0 3 1 1 4 4 4 1 MFS_1 like family Lysis_S PF04971.7 gi|325967855|ref|YP_004244047.1| - 0.31 10.7 7.3 3.3 7.4 0.0 3.4 3 1 0 3 3 3 0 Lysis protein S adh_short_C2 PF13561.1 gi|325967856|ref|YP_004244048.1| - 1.7e-35 122.9 0.0 2.3e-35 122.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|325967856|ref|YP_004244048.1| - 3.6e-33 114.8 0.1 4.9e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|325967856|ref|YP_004244048.1| - 3.6e-18 65.8 0.0 5.3e-18 65.3 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|325967856|ref|YP_004244048.1| - 2.4e-06 27.1 0.1 3.4e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|325967856|ref|YP_004244048.1| - 0.00095 18.4 0.1 0.0028 16.9 0.1 1.7 2 0 0 2 2 2 1 NmrA-like family Eno-Rase_NADH_b PF12242.3 gi|325967856|ref|YP_004244048.1| - 0.0037 17.0 0.1 0.0077 15.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Polysacc_synt_2 PF02719.10 gi|325967856|ref|YP_004244048.1| - 0.0082 15.0 0.2 0.015 14.1 0.0 1.4 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|325967856|ref|YP_004244048.1| - 0.039 13.9 1.8 0.072 13.0 0.7 1.9 2 1 0 2 2 2 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|325967856|ref|YP_004244048.1| - 0.083 12.0 0.1 0.16 11.1 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NTP_transf_2 PF01909.18 gi|325967857|ref|YP_004244049.1| - 0.018 15.3 0.2 0.037 14.3 0.1 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase domain DUF1540 PF07561.6 gi|325967857|ref|YP_004244049.1| - 0.13 12.3 0.4 9.9 6.2 0.1 2.3 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1540) PEP_mutase PF13714.1 gi|325967858|ref|YP_004244050.1| - 3.5e-62 209.7 0.1 4.1e-62 209.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|325967858|ref|YP_004244050.1| - 1.8e-17 62.7 0.4 6.5e-17 60.9 0.2 1.9 1 1 1 2 2 2 1 Isocitrate lyase family 3HCDH_N PF02737.13 gi|325967859|ref|YP_004244051.1| - 8e-66 221.1 0.2 1.1e-65 220.6 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|325967859|ref|YP_004244051.1| - 2.8e-65 219.8 0.0 4.9e-65 219.0 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|325967859|ref|YP_004244051.1| - 2.5e-51 172.0 0.0 2.2e-26 92.0 0.0 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|325967859|ref|YP_004244051.1| - 7.8e-08 32.1 0.0 1.5e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|325967859|ref|YP_004244051.1| - 1.5e-05 24.9 0.0 2.9e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Peptidase_S49 PF01343.13 gi|325967859|ref|YP_004244051.1| - 0.0017 18.1 0.0 0.0046 16.7 0.0 1.7 1 0 0 1 1 1 1 Peptidase family S49 Pyr_redox PF00070.22 gi|325967859|ref|YP_004244051.1| - 0.0065 16.8 0.1 0.035 14.4 0.2 2.2 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|325967859|ref|YP_004244051.1| - 0.0097 16.3 2.3 0.012 16.0 0.1 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent ECH_C PF13766.1 gi|325967859|ref|YP_004244051.1| - 0.013 15.6 0.0 0.092 12.8 0.0 2.3 3 0 0 3 3 3 0 2-enoyl-CoA Hydratase C-terminal region UDPG_MGDP_dh_N PF03721.9 gi|325967859|ref|YP_004244051.1| - 0.047 13.0 0.0 0.1 11.9 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|325967859|ref|YP_004244051.1| - 0.067 13.4 0.1 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding SDH_sah PF01972.11 gi|325967859|ref|YP_004244051.1| - 0.088 11.5 0.1 0.73 8.5 0.1 2.3 1 1 0 1 1 1 0 Serine dehydrogenase proteinase OCD_Mu_crystall PF02423.10 gi|325967859|ref|YP_004244051.1| - 0.12 11.1 0.1 0.25 10.0 0.0 1.5 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family AlaDh_PNT_C PF01262.16 gi|325967859|ref|YP_004244051.1| - 0.14 11.7 0.3 0.28 10.7 0.0 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain BPD_transp_1 PF00528.17 gi|325967860|ref|YP_004244052.1| - 4.4e-12 45.9 16.4 4.4e-12 45.9 11.3 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component FtsX PF02687.16 gi|325967860|ref|YP_004244052.1| - 7 6.4 21.1 0.17 11.6 5.5 3.1 2 2 0 2 2 2 0 FtsX-like permease family SBP_bac_11 PF13531.1 gi|325967861|ref|YP_004244053.1| - 3.8e-17 62.7 0.0 4.8e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TYW3 PF02676.9 gi|325967862|ref|YP_004244054.1| - 1e-40 139.0 0.0 1.2e-40 138.8 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 ABC_tran PF00005.22 gi|325967863|ref|YP_004244055.1| - 1.1e-28 100.1 0.0 1.7e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325967863|ref|YP_004244055.1| - 9.3e-11 42.2 0.0 1e-05 25.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|325967863|ref|YP_004244055.1| - 0.0015 18.2 0.8 0.0027 17.4 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|325967863|ref|YP_004244055.1| - 0.0027 17.9 0.4 0.042 14.0 0.3 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|325967863|ref|YP_004244055.1| - 0.0028 17.9 0.1 0.015 15.6 0.1 1.9 2 1 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|325967863|ref|YP_004244055.1| - 0.009 15.8 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|325967863|ref|YP_004244055.1| - 0.011 15.8 0.1 0.076 13.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|325967863|ref|YP_004244055.1| - 0.018 14.4 0.0 0.024 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|325967863|ref|YP_004244055.1| - 0.045 13.4 0.2 0.12 12.1 0.1 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|325967863|ref|YP_004244055.1| - 0.049 12.8 0.1 1.3 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|325967863|ref|YP_004244055.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|325967863|ref|YP_004244055.1| - 0.062 12.8 0.0 0.082 12.3 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase T2SE PF00437.15 gi|325967863|ref|YP_004244055.1| - 0.093 11.6 0.2 0.18 10.6 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein BPD_transp_1 PF00528.17 gi|325967864|ref|YP_004244056.1| - 6e-22 78.0 40.0 3.2e-14 52.8 9.9 3.4 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Pyr_redox PF00070.22 gi|325967864|ref|YP_004244056.1| - 0.21 12.0 0.6 6.2 7.2 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF2839 PF10999.3 gi|325967864|ref|YP_004244056.1| - 8.1 6.5 9.6 61 3.7 0.1 4.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2839) Resolvase PF00239.16 gi|325967865|ref|YP_004244057.1| - 0.1 12.4 0.0 0.25 11.1 0.0 1.7 1 1 0 1 1 1 0 Resolvase, N terminal domain Ribosomal_L14 PF00238.14 gi|325967866|ref|YP_004244058.1| - 5.9e-34 116.4 0.0 6.7e-34 116.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|325967866|ref|YP_004244058.1| - 0.0056 16.7 0.1 0.017 15.2 0.0 1.8 2 0 0 2 2 2 1 PAS fold tRNA-synt_2b PF00587.20 gi|325967867|ref|YP_004244059.1| - 1.4e-45 154.9 0.0 1.9e-45 154.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|325967867|ref|YP_004244059.1| - 4.5e-17 61.7 0.2 1.3e-16 60.3 0.2 1.8 1 0 0 1 1 1 1 Anticodon binding domain zf-C2HC_2 PF13913.1 gi|325967867|ref|YP_004244059.1| - 0.011 15.4 3.1 0.021 14.4 0.0 2.5 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.5 gi|325967867|ref|YP_004244059.1| - 0.047 13.6 0.1 12 5.9 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Rad50_zn_hook PF04423.9 gi|325967867|ref|YP_004244059.1| - 0.39 10.2 1.9 0.44 10.0 0.0 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif Arginase PF00491.16 gi|325967868|ref|YP_004244060.1| - 6.6e-53 179.7 0.0 7.8e-53 179.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family POR PF01558.13 gi|325967870|ref|YP_004244062.1| - 4.7e-37 127.5 0.1 5.6e-37 127.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF3132 PF11330.3 gi|325967870|ref|YP_004244062.1| - 0.11 12.3 0.1 0.42 10.4 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3132) Fer4 PF00037.22 gi|325967871|ref|YP_004244063.1| - 7.9e-15 53.7 16.2 2.4e-08 33.2 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325967871|ref|YP_004244063.1| - 7.4e-12 44.9 7.0 1e-11 44.5 4.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325967871|ref|YP_004244063.1| - 9.1e-11 41.3 8.6 1.5e-05 24.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325967871|ref|YP_004244063.1| - 1.1e-10 40.7 14.1 1.6e-05 24.5 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325967871|ref|YP_004244063.1| - 2.6e-09 36.5 16.4 6.2e-05 22.6 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|325967871|ref|YP_004244063.1| - 8.5e-09 35.6 8.7 1.7e-08 34.7 6.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325967871|ref|YP_004244063.1| - 2.1e-08 34.7 8.8 0.00029 21.5 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|325967871|ref|YP_004244063.1| - 1.7e-07 31.1 7.2 2.3e-07 30.7 5.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325967871|ref|YP_004244063.1| - 4e-07 30.1 8.8 6.5e-07 29.5 6.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325967871|ref|YP_004244063.1| - 1.7e-06 28.4 10.1 0.0041 17.6 0.2 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|325967871|ref|YP_004244063.1| - 0.00017 21.9 4.6 0.094 13.1 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325967871|ref|YP_004244063.1| - 0.0004 20.5 11.2 0.012 15.8 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|325967871|ref|YP_004244063.1| - 0.00046 20.4 11.3 0.011 16.1 8.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|325967871|ref|YP_004244063.1| - 0.00065 20.0 15.6 0.0063 16.8 2.3 2.6 2 1 1 3 3 3 2 4Fe-4S single cluster domain DUF678 PF05077.7 gi|325967871|ref|YP_004244063.1| - 0.74 9.8 3.1 11 6.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF678) Fer4_3 PF12798.2 gi|325967871|ref|YP_004244063.1| - 2.2 9.0 16.1 0.26 11.9 4.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|325967872|ref|YP_004244064.1| - 3.4e-72 242.6 0.9 4.4e-72 242.3 0.6 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|325967872|ref|YP_004244064.1| - 0.00056 19.8 0.2 0.0019 18.1 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain SHOCT PF09851.4 gi|325967872|ref|YP_004244064.1| - 0.052 13.0 0.1 0.12 11.9 0.1 1.6 1 0 0 1 1 1 0 Short C-terminal domain TPP_enzyme_C PF02775.16 gi|325967873|ref|YP_004244065.1| - 1.4e-24 86.4 0.3 3.9e-24 84.9 0.2 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LexA_DNA_bind PF01726.11 gi|325967873|ref|YP_004244065.1| - 0.052 13.1 0.1 0.21 11.1 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain PaREP1 PF05942.6 gi|325967876|ref|YP_004244068.1| - 3.4e-11 43.0 0.3 3.7e-11 42.8 0.2 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF1877 PF08974.5 gi|325967876|ref|YP_004244068.1| - 0.016 14.8 0.3 0.017 14.7 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1877) LTD PF00932.14 gi|325967877|ref|YP_004244069.1| - 0.0079 16.2 0.0 0.0088 16.1 0.0 1.2 1 0 0 1 1 1 1 Lamin Tail Domain FlgD_ig PF13860.1 gi|325967877|ref|YP_004244069.1| - 0.097 12.4 0.0 0.17 11.6 0.0 1.4 1 1 0 1 1 1 0 FlgD Ig-like domain DUF58 PF01882.13 gi|325967879|ref|YP_004244071.1| - 6.5e-23 80.6 0.0 1e-22 80.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|325967880|ref|YP_004244072.1| - 7.5e-64 213.2 0.0 1.2e-63 212.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|325967880|ref|YP_004244072.1| - 5.4e-12 45.6 0.0 9.1e-12 44.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|325967880|ref|YP_004244072.1| - 0.00016 21.2 0.0 0.001 18.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|325967880|ref|YP_004244072.1| - 0.001 18.1 0.1 0.0068 15.4 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus MCM PF00493.18 gi|325967880|ref|YP_004244072.1| - 0.0017 17.1 0.0 0.049 12.4 0.0 2.4 2 1 0 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|325967880|ref|YP_004244072.1| - 0.0039 17.3 0.0 0.028 14.6 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|325967880|ref|YP_004244072.1| - 0.0042 16.2 0.0 1.7 7.7 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|325967880|ref|YP_004244072.1| - 0.019 15.7 0.0 0.038 14.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|325967880|ref|YP_004244072.1| - 0.034 14.0 0.0 0.42 10.5 0.0 2.3 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) FtsL PF04999.8 gi|325967881|ref|YP_004244073.1| - 0.03 14.0 1.1 2.4 7.9 0.0 2.6 2 0 0 2 2 2 0 Cell division protein FtsL DUF4129 PF13559.1 gi|325967882|ref|YP_004244074.1| - 0.00012 22.0 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) FtsX PF02687.16 gi|325967882|ref|YP_004244074.1| - 0.00081 19.1 5.0 0.12 12.1 0.2 2.2 2 0 0 2 2 2 2 FtsX-like permease family SP_C-Propep PF08999.5 gi|325967882|ref|YP_004244074.1| - 0.056 12.9 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide Sigma_reg_N PF13800.1 gi|325967882|ref|YP_004244074.1| - 1.4 8.9 7.5 4.1 7.5 0.8 2.6 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4341 PF14241.1 gi|325967883|ref|YP_004244075.1| - 0.027 14.1 1.4 0.027 14.1 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4341) DUF973 PF06157.6 gi|325967883|ref|YP_004244075.1| - 0.031 13.2 30.5 0.056 12.4 21.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF973) Lactamase_B PF00753.22 gi|325967884|ref|YP_004244076.1| - 4.8e-10 39.4 0.1 8.4e-10 38.6 0.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|325967884|ref|YP_004244076.1| - 0.0012 18.4 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain E3_UbLigase_EDD PF11547.3 gi|325967884|ref|YP_004244076.1| - 0.093 12.2 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD AMP-binding PF00501.23 gi|325967885|ref|YP_004244077.1| - 6.8e-79 265.1 0.0 8.2e-79 264.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325967885|ref|YP_004244077.1| - 2.7e-17 63.4 0.0 6.4e-17 62.2 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Exo_endo_phos PF03372.18 gi|325967886|ref|YP_004244078.1| - 1e-18 68.1 0.0 1.2e-18 67.9 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|325967886|ref|YP_004244078.1| - 2.1e-16 59.5 0.0 3e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Sulf_transp PF04143.9 gi|325967887|ref|YP_004244079.1| - 3.6e-14 52.4 21.1 8.3e-09 35.3 4.1 4.9 5 0 0 5 5 5 2 Sulphur transport Ribosomal_S6e PF01092.14 gi|325967888|ref|YP_004244080.1| - 3.1e-24 85.0 0.5 4e-24 84.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e Cren7 PF11520.3 gi|325967889|ref|YP_004244081.1| - 1.2e-19 69.7 3.2 1.3e-19 69.5 2.2 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 AceK PF06315.6 gi|325967889|ref|YP_004244081.1| - 0.11 10.7 0.0 0.11 10.7 0.0 1.0 1 0 0 1 1 1 0 Isocitrate dehydrogenase kinase/phosphatase (AceK) UDG PF03167.14 gi|325967890|ref|YP_004244082.1| - 2.6e-42 143.8 0.0 3.2e-42 143.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Glyco_tranf_2_3 PF13641.1 gi|325967891|ref|YP_004244083.1| - 9.6e-20 71.3 0.0 1.4e-19 70.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|325967891|ref|YP_004244083.1| - 1.5e-16 60.6 3.4 3e-16 59.6 2.4 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|325967891|ref|YP_004244083.1| - 1.5e-12 47.4 0.0 2.2e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|325967891|ref|YP_004244083.1| - 1.4e-06 27.7 0.0 2.1e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_17 PF04724.8 gi|325967891|ref|YP_004244083.1| - 0.021 13.8 0.0 0.04 12.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 17 Pribosyltran PF00156.22 gi|325967892|ref|YP_004244084.1| - 7.9e-18 64.3 0.1 1.4e-17 63.5 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|325967892|ref|YP_004244084.1| - 0.00028 20.1 0.0 0.00046 19.4 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_31 PF13560.1 gi|325967892|ref|YP_004244084.1| - 0.00072 19.7 0.0 0.091 12.9 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Resolvase PF00239.16 gi|325967892|ref|YP_004244084.1| - 0.047 13.5 0.3 0.13 12.1 0.2 1.9 1 1 0 1 1 1 0 Resolvase, N terminal domain PRTase_2 PF15609.1 gi|325967892|ref|YP_004244084.1| - 0.053 12.8 0.0 0.087 12.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase DUF972 PF06156.8 gi|325967893|ref|YP_004244085.1| - 0.00012 22.4 0.8 0.00012 22.4 0.6 1.6 2 0 0 2 2 1 1 Protein of unknown function (DUF972) Cep57_CLD_2 PF14197.1 gi|325967893|ref|YP_004244085.1| - 0.00013 21.8 3.8 0.00023 21.0 2.7 1.4 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 DUF904 PF06005.7 gi|325967893|ref|YP_004244085.1| - 0.00029 21.0 5.0 0.00045 20.4 2.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|325967893|ref|YP_004244085.1| - 0.001 18.9 7.2 0.0021 17.9 4.6 1.8 1 1 1 2 2 2 1 bZIP transcription factor bZIP_2 PF07716.10 gi|325967893|ref|YP_004244085.1| - 0.0016 18.1 6.5 0.0034 17.1 4.5 1.5 1 0 0 1 1 1 1 Basic region leucine zipper DUF4164 PF13747.1 gi|325967893|ref|YP_004244085.1| - 0.0021 18.1 2.6 0.004 17.2 1.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4164) PQQ PF01011.16 gi|325967893|ref|YP_004244085.1| - 0.0089 15.5 0.0 0.02 14.3 0.0 1.6 1 0 0 1 1 1 1 PQQ enzyme repeat TMF_TATA_bd PF12325.3 gi|325967893|ref|YP_004244085.1| - 0.0091 15.7 1.9 0.016 14.8 1.3 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding ERM PF00769.14 gi|325967893|ref|YP_004244085.1| - 0.013 15.0 1.4 0.02 14.4 1.0 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family TMF_DNA_bd PF12329.3 gi|325967893|ref|YP_004244085.1| - 0.014 15.2 4.5 0.027 14.2 3.1 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Hemerythrin PF01814.18 gi|325967893|ref|YP_004244085.1| - 0.018 15.1 0.1 0.041 14.0 0.1 1.5 2 0 0 2 2 1 0 Hemerythrin HHE cation binding domain CCDC155 PF14662.1 gi|325967893|ref|YP_004244085.1| - 0.022 14.3 1.1 0.037 13.6 0.8 1.4 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 Leu_zip PF15294.1 gi|325967893|ref|YP_004244085.1| - 0.026 13.6 2.0 0.04 13.0 1.4 1.3 1 0 0 1 1 1 0 Leucine zipper DUF4200 PF13863.1 gi|325967893|ref|YP_004244085.1| - 0.031 14.2 2.9 0.031 14.2 2.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) HALZ PF02183.13 gi|325967893|ref|YP_004244085.1| - 0.038 13.6 6.8 0.69 9.6 2.4 2.7 2 1 1 3 3 3 0 Homeobox associated leucine zipper Herpes_BLRF2 PF05812.7 gi|325967893|ref|YP_004244085.1| - 0.044 13.5 3.0 0.079 12.7 2.1 1.4 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein IncA PF04156.9 gi|325967893|ref|YP_004244085.1| - 0.068 12.7 0.3 0.097 12.2 0.2 1.3 1 0 0 1 1 1 0 IncA protein TSC22 PF01166.13 gi|325967893|ref|YP_004244085.1| - 0.07 13.1 4.5 0.17 11.8 3.1 1.7 1 0 0 1 1 1 0 TSC-22/dip/bun family DUF3450 PF11932.3 gi|325967893|ref|YP_004244085.1| - 0.1 11.8 0.1 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DivIC PF04977.10 gi|325967893|ref|YP_004244085.1| - 0.11 12.0 4.5 0.3 10.5 3.1 1.8 1 1 0 1 1 1 0 Septum formation initiator DUF3552 PF12072.3 gi|325967893|ref|YP_004244085.1| - 0.13 11.4 3.1 0.19 10.9 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|325967893|ref|YP_004244085.1| - 0.21 11.6 2.5 0.53 10.3 1.8 1.7 1 1 0 1 1 1 0 DivIVA protein Striatin PF08232.7 gi|325967893|ref|YP_004244085.1| - 0.36 11.1 4.2 0.69 10.2 2.9 1.4 1 0 0 1 1 1 0 Striatin family ApoC-I PF04691.7 gi|325967893|ref|YP_004244085.1| - 0.38 10.4 3.9 0.35 10.5 0.2 2.6 2 1 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) PBP PF01161.15 gi|325967894|ref|YP_004244086.1| - 3.1e-28 98.4 0.0 4e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF347 PF03988.7 gi|325967894|ref|YP_004244086.1| - 0.022 14.6 0.2 0.046 13.6 0.1 1.6 1 0 0 1 1 1 0 Repeat of Unknown Function (DUF347) B5 PF03484.10 gi|325967895|ref|YP_004244087.1| - 5e-17 61.4 0.1 1.7e-13 50.2 0.1 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|325967895|ref|YP_004244087.1| - 1.4e-13 50.6 0.0 3.1e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain tRNA_deacylase PF04414.7 gi|325967896|ref|YP_004244088.1| - 6e-55 185.6 0.0 6.8e-55 185.4 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF429 PF04250.8 gi|325967897|ref|YP_004244089.1| - 3.2e-17 62.4 0.0 6.9e-17 61.3 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DUF35_N PF12172.3 gi|325967900|ref|YP_004244092.1| - 6.6e-15 54.5 1.1 9.8e-15 53.9 0.8 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|325967900|ref|YP_004244092.1| - 4.5e-12 46.0 0.1 7.1e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DZR PF12773.2 gi|325967900|ref|YP_004244092.1| - 0.012 15.4 0.3 0.02 14.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon PolC_DP2 PF03833.8 gi|325967900|ref|YP_004244092.1| - 0.02 12.6 0.0 0.021 12.4 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 NRDD PF13597.1 gi|325967900|ref|YP_004244092.1| - 0.026 12.5 0.1 0.036 12.1 0.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Lar_restr_allev PF14354.1 gi|325967900|ref|YP_004244092.1| - 0.029 14.6 2.2 4.8 7.5 0.1 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar HypA PF01155.14 gi|325967900|ref|YP_004244092.1| - 0.067 12.8 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|325967900|ref|YP_004244092.1| - 0.12 11.5 4.7 0.66 9.2 3.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|325967900|ref|YP_004244092.1| - 0.17 11.2 0.9 3.7 6.9 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|325967900|ref|YP_004244092.1| - 0.21 11.0 4.1 0.51 9.8 2.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|325967900|ref|YP_004244092.1| - 0.85 9.6 4.8 16 5.5 3.3 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Thiolase_C PF02803.13 gi|325967901|ref|YP_004244093.1| - 5.6e-13 48.4 3.6 3e-11 42.8 0.0 3.4 4 0 0 4 4 4 2 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|325967901|ref|YP_004244093.1| - 2.6e-11 42.9 1.2 3.5e-09 36.0 0.0 2.2 1 1 0 2 2 2 2 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|325967901|ref|YP_004244093.1| - 1.6e-06 27.6 1.7 4.9e-05 22.9 0.3 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|325967901|ref|YP_004244093.1| - 4e-05 23.2 6.8 0.0015 18.0 1.4 2.7 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|325967901|ref|YP_004244093.1| - 0.00013 21.7 0.4 0.17 11.7 0.0 3.4 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain Presenilin PF01080.12 gi|325967903|ref|YP_004244095.1| - 8.3e-07 28.1 29.5 5.5e-05 22.1 4.4 2.2 2 0 0 2 2 2 2 Presenilin DUF1119 PF06550.6 gi|325967903|ref|YP_004244095.1| - 0.0077 15.3 31.3 0.035 13.2 14.2 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1119) Gemini_mov PF01708.11 gi|325967903|ref|YP_004244095.1| - 0.4 10.2 6.5 6.3 6.4 0.5 3.0 2 1 0 2 2 2 0 Geminivirus putative movement protein DUF2723 PF11028.3 gi|325967903|ref|YP_004244095.1| - 0.82 9.1 12.4 0.071 12.5 5.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2723) tRNA-synt_2d PF01409.15 gi|325967904|ref|YP_004244096.1| - 2.9e-82 275.5 0.0 3.9e-82 275.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|325967904|ref|YP_004244096.1| - 3.1e-06 26.2 2.4 0.065 11.9 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_27 PF13463.1 gi|325967904|ref|YP_004244096.1| - 7.2e-05 23.0 0.0 0.00037 20.7 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|325967904|ref|YP_004244096.1| - 0.0014 18.2 3.0 0.0031 17.1 0.0 3.0 4 0 0 4 4 4 1 MarR family MarR PF01047.17 gi|325967904|ref|YP_004244096.1| - 0.0014 18.2 1.6 0.02 14.5 0.0 3.4 4 0 0 4 4 4 1 MarR family HTH_20 PF12840.2 gi|325967904|ref|YP_004244096.1| - 0.0023 17.7 0.0 0.33 10.7 0.0 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain AAA_assoc_C PF09821.4 gi|325967904|ref|YP_004244096.1| - 0.0023 18.1 0.1 0.0077 16.4 0.0 1.9 2 0 0 2 2 2 1 C-terminal AAA-associated domain Rrf2 PF02082.15 gi|325967904|ref|YP_004244096.1| - 0.0041 17.2 0.1 0.17 12.0 0.0 2.6 2 0 0 2 2 2 1 Transcriptional regulator TrmB PF01978.14 gi|325967904|ref|YP_004244096.1| - 0.0093 15.6 0.3 0.087 12.5 0.0 2.7 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.1 gi|325967904|ref|YP_004244096.1| - 0.013 15.5 0.1 6.2 6.9 0.0 3.6 3 0 0 3 3 3 0 Mrr N-terminal domain HTH_Crp_2 PF13545.1 gi|325967904|ref|YP_004244096.1| - 0.016 14.9 4.2 0.31 10.8 0.0 3.4 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain GntR PF00392.16 gi|325967904|ref|YP_004244096.1| - 0.019 14.3 0.0 1.1 8.7 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|325967904|ref|YP_004244096.1| - 0.039 14.0 0.0 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|325967904|ref|YP_004244096.1| - 0.054 12.8 0.5 1.3 8.4 0.0 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|325967904|ref|YP_004244096.1| - 0.11 12.1 0.0 1.6 8.4 0.0 2.8 3 0 0 3 3 3 0 IclR helix-turn-helix domain ETF PF01012.16 gi|325967905|ref|YP_004244097.1| - 7.4e-36 123.3 3.1 1e-35 122.8 2.1 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|325967906|ref|YP_004244098.1| - 1.9e-31 107.5 0.0 4.2e-31 106.4 0.0 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|325967906|ref|YP_004244098.1| - 2.8e-12 46.6 0.0 9.3e-12 44.9 0.0 1.9 3 0 0 3 3 3 1 Electron transfer flavoprotein domain CCG PF02754.11 gi|325967907|ref|YP_004244099.1| - 2e-27 95.0 0.3 2e-13 50.1 0.2 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|325967907|ref|YP_004244099.1| - 2e-12 46.9 5.0 2e-12 46.9 3.4 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325967907|ref|YP_004244099.1| - 4.5e-08 33.2 8.4 5.1e-08 33.0 4.0 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325967907|ref|YP_004244099.1| - 5.7e-08 32.9 6.1 9.3e-08 32.3 3.1 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325967907|ref|YP_004244099.1| - 1.4e-07 31.8 6.2 0.0055 17.0 0.4 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325967907|ref|YP_004244099.1| - 5.4e-07 29.3 9.9 1.1e-06 28.3 5.8 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325967907|ref|YP_004244099.1| - 5.8e-07 30.1 5.9 1.9e-06 28.4 4.1 2.0 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|325967907|ref|YP_004244099.1| - 2.3e-05 24.6 11.3 0.0001 22.6 7.4 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325967907|ref|YP_004244099.1| - 8.7e-05 22.5 9.9 0.053 13.8 0.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325967907|ref|YP_004244099.1| - 0.00061 19.5 3.5 0.16 11.8 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325967907|ref|YP_004244099.1| - 0.0083 15.9 20.6 0.16 11.8 3.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|325967907|ref|YP_004244099.1| - 0.02 14.7 19.4 0.034 14.0 1.5 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|325967907|ref|YP_004244099.1| - 0.042 13.4 1.7 1.9 8.1 0.0 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|325967907|ref|YP_004244099.1| - 0.49 10.0 18.7 0.097 12.3 3.3 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|325967907|ref|YP_004244099.1| - 1.2 9.8 24.7 0.46 11.1 3.6 3.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|325967907|ref|YP_004244099.1| - 4.7 7.8 9.8 2 9.0 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain RIO1 PF01163.17 gi|325967908|ref|YP_004244100.1| - 5.5e-11 42.1 0.1 8.8e-11 41.4 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|325967908|ref|YP_004244100.1| - 5.4e-10 38.8 0.1 9.5e-10 38.0 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|325967908|ref|YP_004244100.1| - 7.3e-09 35.7 0.0 1.8e-05 24.5 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|325967908|ref|YP_004244100.1| - 6.4e-05 22.1 0.0 0.00036 19.6 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|325967908|ref|YP_004244100.1| - 0.0012 18.0 0.2 0.002 17.3 0.1 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|325967908|ref|YP_004244100.1| - 0.0015 17.6 0.0 0.0017 17.4 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Ribosomal_S13_N PF08069.7 gi|325967909|ref|YP_004244101.1| - 3.1e-25 87.7 0.2 5.6e-25 86.9 0.2 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|325967909|ref|YP_004244101.1| - 4.5e-18 64.7 0.1 7.2e-18 64.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 RecX PF02631.11 gi|325967909|ref|YP_004244101.1| - 0.14 12.3 0.0 0.83 9.8 0.0 1.9 2 0 0 2 2 2 0 RecX family UPF0179 PF03684.8 gi|325967910|ref|YP_004244102.1| - 4.3e-26 91.2 0.4 4.8e-26 91.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) MAGP PF05507.6 gi|325967910|ref|YP_004244102.1| - 0.11 12.3 1.0 0.15 11.8 0.2 1.5 2 0 0 2 2 2 0 Microfibril-associated glycoprotein (MAGP) Peptidase_M42 PF05343.9 gi|325967911|ref|YP_004244103.1| - 1.6e-87 292.9 0.0 1.8e-87 292.7 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.12 gi|325967911|ref|YP_004244103.1| - 8.5e-05 22.3 0.0 0.00042 20.1 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M20 PF01546.23 gi|325967911|ref|YP_004244103.1| - 8.9e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Gp_dh_N PF00044.19 gi|325967912|ref|YP_004244104.1| - 6.7e-17 61.8 0.5 5.8e-16 58.8 0.2 2.4 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|325967912|ref|YP_004244104.1| - 2e-15 56.5 0.0 3.1e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|325967912|ref|YP_004244104.1| - 1.6e-11 44.1 0.3 3.1e-11 43.2 0.2 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|325967912|ref|YP_004244104.1| - 5.6e-05 23.6 0.0 0.00013 22.4 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|325967912|ref|YP_004244104.1| - 0.00049 20.4 0.1 0.0024 18.2 0.0 2.1 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|325967912|ref|YP_004244104.1| - 0.0044 16.1 2.4 0.049 12.7 0.6 2.6 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|325967912|ref|YP_004244104.1| - 0.024 14.0 0.2 0.74 9.1 0.1 2.5 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Semialdhyde_dh PF01118.19 gi|325967912|ref|YP_004244104.1| - 0.024 14.9 0.0 0.061 13.6 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|325967912|ref|YP_004244104.1| - 0.069 13.5 0.5 0.65 10.4 0.4 2.3 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent PGK PF00162.14 gi|325967913|ref|YP_004244105.1| - 6.2e-105 350.8 0.0 7.9e-105 350.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase KH_1 PF00013.24 gi|325967914|ref|YP_004244106.1| - 7.7e-08 31.8 4.3 0.002 17.7 0.4 2.3 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|325967914|ref|YP_004244106.1| - 6.4e-05 22.5 1.2 0.024 14.2 0.1 2.4 2 0 0 2 2 2 2 KH domain Pox_vIL-18BP PF05566.7 gi|325967914|ref|YP_004244106.1| - 0.019 14.9 0.1 0.031 14.2 0.1 1.3 1 0 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein HTH_1 PF00126.22 gi|325967914|ref|YP_004244106.1| - 0.039 13.6 0.0 0.13 12.0 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.1 gi|325967914|ref|YP_004244106.1| - 0.13 11.9 2.7 0.21 11.3 0.9 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_28 PF13518.1 gi|325967914|ref|YP_004244106.1| - 2 8.5 6.1 2.8 8.0 2.7 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain Pcc1 PF09341.5 gi|325967915|ref|YP_004244107.1| - 0.013 15.4 0.1 0.029 14.4 0.0 1.5 1 1 0 1 1 1 0 Transcription factor Pcc1 Radical_SAM PF04055.16 gi|325967917|ref|YP_004244109.1| - 2e-20 73.6 0.3 1.4e-19 70.8 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|325967917|ref|YP_004244109.1| - 1.1e-07 31.8 0.0 2.6e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|325967917|ref|YP_004244109.1| - 8.7e-06 25.9 0.0 1.7e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rad50_zn_hook PF04423.9 gi|325967917|ref|YP_004244109.1| - 0.36 10.3 2.0 7.4 6.1 0.1 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif TrmB PF01978.14 gi|325967918|ref|YP_004244110.1| - 4.8e-20 71.0 0.1 1.1e-19 69.8 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|325967918|ref|YP_004244110.1| - 0.00011 21.7 0.0 0.003 17.1 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|325967918|ref|YP_004244110.1| - 0.0038 16.5 0.0 0.023 14.0 0.0 2.4 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|325967918|ref|YP_004244110.1| - 0.099 12.7 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_9 PF08221.6 gi|325967918|ref|YP_004244110.1| - 0.11 12.3 0.0 0.47 10.3 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_28 PF13518.1 gi|325967918|ref|YP_004244110.1| - 0.12 12.4 0.0 0.57 10.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain tRNA-synt_2b PF00587.20 gi|325967919|ref|YP_004244111.1| - 1.6e-36 125.5 0.0 2.8e-36 124.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|325967919|ref|YP_004244111.1| - 9.2e-24 83.5 8.4 1.6e-23 82.7 5.8 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain HCMV_UL139 PF12507.3 gi|325967919|ref|YP_004244111.1| - 0.025 14.7 0.9 0.056 13.6 0.6 1.6 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein DUF948 PF06103.6 gi|325967919|ref|YP_004244111.1| - 0.038 13.8 0.4 0.086 12.7 0.3 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) OmpH PF03938.9 gi|325967919|ref|YP_004244111.1| - 0.042 13.7 0.9 1.2 9.0 0.2 2.6 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) Mnd1 PF03962.10 gi|325967919|ref|YP_004244111.1| - 0.061 12.9 3.8 0.097 12.3 2.6 1.2 1 0 0 1 1 1 0 Mnd1 family APG6 PF04111.7 gi|325967919|ref|YP_004244111.1| - 0.1 11.6 2.0 0.17 10.9 1.4 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 ALIX_LYPXL_bnd PF13949.1 gi|325967919|ref|YP_004244111.1| - 0.11 11.4 4.6 0.18 10.7 3.2 1.3 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF241 PF03087.9 gi|325967919|ref|YP_004244111.1| - 0.23 10.9 5.3 0.62 9.5 3.7 1.6 2 0 0 2 2 2 0 Arabidopsis protein of unknown function IncA PF04156.9 gi|325967919|ref|YP_004244111.1| - 0.68 9.5 3.5 1.1 8.8 2.4 1.2 1 0 0 1 1 1 0 IncA protein Bap31 PF05529.7 gi|325967919|ref|YP_004244111.1| - 0.75 9.2 3.4 1.2 8.5 2.3 1.2 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like DivIC PF04977.10 gi|325967919|ref|YP_004244111.1| - 3.5 7.1 8.5 2.1 7.8 0.1 2.5 1 1 1 2 2 2 0 Septum formation initiator eIF-4B PF06273.6 gi|325967919|ref|YP_004244111.1| - 4.5 5.8 5.3 6.4 5.4 3.7 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B TPP_enzyme_C PF02775.16 gi|325967920|ref|YP_004244112.1| - 2.5e-22 79.1 0.2 3.8e-22 78.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|325967920|ref|YP_004244112.1| - 0.0033 16.3 0.0 0.0042 16.0 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Glyco_hydro_71 PF03659.9 gi|325967920|ref|YP_004244112.1| - 0.004 15.6 0.2 0.0059 15.1 0.2 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 71 E1_dh PF00676.15 gi|325967920|ref|YP_004244112.1| - 0.11 11.1 0.1 0.16 10.6 0.1 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component POR_N PF01855.14 gi|325967921|ref|YP_004244113.1| - 2.4e-64 216.9 0.2 3e-64 216.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|325967921|ref|YP_004244113.1| - 0.0019 18.1 0.0 0.0044 16.9 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|325967921|ref|YP_004244113.1| - 0.0032 16.9 0.4 0.0046 16.4 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|325967922|ref|YP_004244114.1| - 1.3e-16 59.3 17.8 9.1e-09 34.5 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325967922|ref|YP_004244114.1| - 2.3e-11 43.0 13.9 1.9e-06 27.4 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325967922|ref|YP_004244114.1| - 4.8e-11 42.2 22.5 1.8e-07 30.8 8.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325967922|ref|YP_004244114.1| - 4.8e-11 42.8 9.8 9.2e-11 41.9 6.9 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|325967922|ref|YP_004244114.1| - 5.4e-11 42.1 8.8 6.8e-11 41.8 6.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325967922|ref|YP_004244114.1| - 9.6e-10 39.0 8.7 5.6e-06 27.0 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|325967922|ref|YP_004244114.1| - 1.8e-09 37.7 11.3 2.3e-09 37.3 7.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325967922|ref|YP_004244114.1| - 2.9e-09 36.3 12.5 0.0002 21.1 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|325967922|ref|YP_004244114.1| - 3.6e-07 30.4 3.0 0.0051 17.1 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325967922|ref|YP_004244114.1| - 1.4e-05 24.9 30.2 0.00064 19.6 7.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325967922|ref|YP_004244114.1| - 1.6e-05 25.2 6.1 0.0083 16.5 1.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325967922|ref|YP_004244114.1| - 7e-05 22.8 13.5 0.007 16.6 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|325967922|ref|YP_004244114.1| - 0.00029 21.3 10.3 0.14 12.7 0.3 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|325967922|ref|YP_004244114.1| - 0.00052 20.3 9.2 0.017 15.4 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|325967922|ref|YP_004244114.1| - 0.016 15.7 6.9 0.016 15.7 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain MerT PF02411.10 gi|325967922|ref|YP_004244114.1| - 0.047 13.5 0.1 0.066 13.0 0.1 1.2 1 0 0 1 1 1 0 MerT mercuric transport protein POR PF01558.13 gi|325967923|ref|YP_004244115.1| - 2.7e-28 99.0 0.1 3.5e-28 98.6 0.1 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase CxxCxxCC PF03692.10 gi|325967924|ref|YP_004244116.1| - 1.1e-17 64.2 1.5 1.6e-17 63.7 1.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF77 PF01910.12 gi|325967925|ref|YP_004244117.1| - 4.2e-26 90.4 0.3 4.8e-26 90.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 E1-E2_ATPase PF00122.15 gi|325967926|ref|YP_004244118.1| - 1.2e-52 178.1 1.6 1.2e-52 178.1 1.1 2.1 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|325967926|ref|YP_004244118.1| - 2.1e-48 165.6 0.5 4.6e-48 164.4 0.4 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|325967926|ref|YP_004244118.1| - 7.8e-18 64.3 0.0 1.5e-13 50.6 0.1 2.9 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.2 gi|325967926|ref|YP_004244118.1| - 1.5e-17 64.4 0.0 3.3e-17 63.2 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|325967926|ref|YP_004244118.1| - 7.1e-06 25.7 0.7 0.00027 20.6 0.3 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|325967926|ref|YP_004244118.1| - 0.11 12.4 0.0 0.46 10.3 0.0 2.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase YHS PF04945.8 gi|325967927|ref|YP_004244119.1| - 1.5e-18 66.3 0.8 1.8e-18 66.0 0.5 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|325967927|ref|YP_004244119.1| - 0.00026 21.0 1.3 0.00039 20.5 0.9 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|325967927|ref|YP_004244119.1| - 0.0016 18.0 0.8 0.0025 17.4 0.5 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ribosomal_L24e PF01246.15 gi|325967927|ref|YP_004244119.1| - 0.064 13.1 0.1 0.07 12.9 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e DUF4454 PF14628.1 gi|325967927|ref|YP_004244119.1| - 0.073 12.6 0.0 0.073 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4454) DUF2116 PF09889.4 gi|325967927|ref|YP_004244119.1| - 0.7 9.7 2.5 2.5 7.9 1.7 1.9 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.5 gi|325967928|ref|YP_004244120.1| - 8.7e-14 51.3 7.4 1.6e-13 50.5 5.1 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.1 gi|325967928|ref|YP_004244120.1| - 1.4e-13 49.9 0.4 1.4e-13 49.9 0.3 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|325967928|ref|YP_004244120.1| - 2.8e-11 42.8 0.4 8.2e-11 41.4 0.1 1.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|325967928|ref|YP_004244120.1| - 5.1e-10 38.9 0.0 1e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|325967928|ref|YP_004244120.1| - 1.1e-09 37.6 1.2 2e-09 36.8 0.8 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|325967928|ref|YP_004244120.1| - 6.4e-09 35.3 0.5 1.8e-08 33.8 0.0 2.0 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|325967928|ref|YP_004244120.1| - 7.9e-09 35.1 0.0 1.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|325967928|ref|YP_004244120.1| - 5.9e-07 28.9 0.0 1.1e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|325967928|ref|YP_004244120.1| - 4.2e-06 26.3 0.0 9.7e-06 25.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|325967928|ref|YP_004244120.1| - 7.6e-06 25.3 0.6 1.5e-05 24.4 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|325967928|ref|YP_004244120.1| - 9e-06 25.1 0.4 2e-05 24.0 0.3 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|325967928|ref|YP_004244120.1| - 1.1e-05 25.0 0.0 2.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|325967928|ref|YP_004244120.1| - 1.5e-05 25.0 0.0 3.9e-05 23.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|325967928|ref|YP_004244120.1| - 3.7e-05 23.0 0.1 6.9e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|325967928|ref|YP_004244120.1| - 8.4e-05 22.8 0.0 0.00014 22.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_17 PF12728.2 gi|325967928|ref|YP_004244120.1| - 9.5e-05 22.5 0.6 0.00051 20.2 0.0 2.3 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|325967928|ref|YP_004244120.1| - 9.8e-05 22.0 0.0 0.00023 20.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|325967928|ref|YP_004244120.1| - 0.00018 20.7 0.3 0.00039 19.6 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.10 gi|325967928|ref|YP_004244120.1| - 0.0004 20.1 0.2 0.003 17.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.1 gi|325967928|ref|YP_004244120.1| - 0.0006 19.9 0.1 0.0012 19.0 0.0 1.5 2 0 0 2 2 1 1 Winged helix-turn helix DUF977 PF06163.6 gi|325967928|ref|YP_004244120.1| - 0.00067 19.4 0.3 0.0011 18.6 0.2 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_3 PF01381.17 gi|325967928|ref|YP_004244120.1| - 0.00087 19.0 0.2 0.0023 17.7 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_DeoR PF08220.7 gi|325967928|ref|YP_004244120.1| - 0.0013 18.2 0.1 0.0022 17.5 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain zf-FCS PF06467.9 gi|325967928|ref|YP_004244120.1| - 0.0013 18.2 0.2 0.0025 17.3 0.1 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif HTH_10 PF04967.7 gi|325967928|ref|YP_004244120.1| - 0.0014 18.1 0.5 0.0033 16.9 0.1 1.8 2 0 0 2 2 1 1 HTH DNA binding domain TetR_N PF00440.18 gi|325967928|ref|YP_004244120.1| - 0.0014 18.2 0.1 0.0027 17.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_31 PF13560.1 gi|325967928|ref|YP_004244120.1| - 0.0014 18.7 0.5 0.0026 17.9 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.6 gi|325967928|ref|YP_004244120.1| - 0.0015 18.8 0.0 0.0024 18.2 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_28 PF13518.1 gi|325967928|ref|YP_004244120.1| - 0.0015 18.4 0.8 0.0026 17.7 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain LacI PF00356.16 gi|325967928|ref|YP_004244120.1| - 0.0022 17.5 0.4 0.0045 16.5 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_6 PF01418.12 gi|325967928|ref|YP_004244120.1| - 0.0024 17.5 0.6 0.0038 16.9 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family Fe_dep_repress PF01325.14 gi|325967928|ref|YP_004244120.1| - 0.0027 17.6 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Mga PF05043.8 gi|325967928|ref|YP_004244120.1| - 0.0028 17.9 0.0 0.0056 16.9 0.0 1.5 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_34 PF13601.1 gi|325967928|ref|YP_004244120.1| - 0.003 17.5 0.0 0.006 16.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_22 PF13309.1 gi|325967928|ref|YP_004244120.1| - 0.0039 16.9 0.2 0.012 15.3 0.0 1.9 2 0 0 2 2 1 1 HTH domain HTH_8 PF02954.14 gi|325967928|ref|YP_004244120.1| - 0.0048 16.4 0.8 0.007 15.8 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, Fis family Penicillinase_R PF03965.11 gi|325967928|ref|YP_004244120.1| - 0.0048 16.9 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_CodY PF08222.6 gi|325967928|ref|YP_004244120.1| - 0.007 15.6 0.6 0.015 14.6 0.4 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|325967928|ref|YP_004244120.1| - 0.0071 15.4 2.2 0.012 14.7 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.5 gi|325967928|ref|YP_004244120.1| - 0.0084 15.7 0.0 0.083 12.6 0.0 2.2 2 0 0 2 2 2 1 FeoC like transcriptional regulator GerE PF00196.14 gi|325967928|ref|YP_004244120.1| - 0.0094 15.2 0.2 0.0094 15.2 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|325967928|ref|YP_004244120.1| - 0.013 14.9 0.7 0.025 14.0 0.1 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 Cys_rich_CPXG PF14255.1 gi|325967928|ref|YP_004244120.1| - 0.014 15.2 0.2 0.03 14.1 0.1 1.6 1 0 0 1 1 1 0 Cysteine-rich CPXCG Trp_repressor PF01371.14 gi|325967928|ref|YP_004244120.1| - 0.016 15.1 0.3 0.032 14.1 0.2 1.4 1 0 0 1 1 1 0 Trp repressor protein HTH_1 PF00126.22 gi|325967928|ref|YP_004244120.1| - 0.016 14.9 0.2 0.031 14.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Crp PF00325.15 gi|325967928|ref|YP_004244120.1| - 0.02 14.3 0.3 0.057 12.8 0.1 1.9 2 0 0 2 2 1 0 Bacterial regulatory proteins, crp family Rrf2 PF02082.15 gi|325967928|ref|YP_004244120.1| - 0.021 14.9 0.1 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_41 PF14502.1 gi|325967928|ref|YP_004244120.1| - 0.025 14.1 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|325967928|ref|YP_004244120.1| - 0.03 13.8 0.0 0.061 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease EAP30 PF04157.11 gi|325967928|ref|YP_004244120.1| - 0.031 13.4 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_9 PF08221.6 gi|325967928|ref|YP_004244120.1| - 0.051 13.4 0.0 0.094 12.5 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Zn_ribbon_recom PF13408.1 gi|325967928|ref|YP_004244120.1| - 0.065 13.5 4.5 0.12 12.6 3.1 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Phage_pRha PF09669.5 gi|325967928|ref|YP_004244120.1| - 0.076 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) HTH_AraC PF00165.18 gi|325967928|ref|YP_004244120.1| - 0.087 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_Tnp_Tc3_2 PF01498.13 gi|325967928|ref|YP_004244120.1| - 0.087 12.8 0.5 0.17 11.9 0.1 1.7 2 0 0 2 2 1 0 Transposase DUF134 PF02001.11 gi|325967928|ref|YP_004244120.1| - 0.089 12.6 0.1 0.61 10.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF134 Cullin PF00888.17 gi|325967928|ref|YP_004244120.1| - 0.13 10.7 0.0 0.17 10.3 0.0 1.1 1 0 0 1 1 1 0 Cullin family Glyco_hydro_57 PF03065.10 gi|325967930|ref|YP_004244122.1| - 2.9e-48 164.6 1.6 6.8e-48 163.3 1.1 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 BPD_transp_1 PF00528.17 gi|325967931|ref|YP_004244123.1| - 1.9e-15 56.8 25.8 1.9e-15 56.8 17.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4500 PF14937.1 gi|325967931|ref|YP_004244123.1| - 0.16 11.7 4.0 4.4 7.2 0.0 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4500) BPD_transp_1 PF00528.17 gi|325967932|ref|YP_004244124.1| - 9.7e-16 57.8 23.5 9.7e-16 57.8 16.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component FWWh PF14922.1 gi|325967932|ref|YP_004244124.1| - 0.71 9.3 4.5 0.4 10.1 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function SBP_bac_8 PF13416.1 gi|325967933|ref|YP_004244125.1| - 7.2e-22 78.4 1.3 7.2e-22 78.4 0.9 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein VSP PF03302.8 gi|325967933|ref|YP_004244125.1| - 0.014 14.0 4.5 0.022 13.4 3.1 1.2 1 0 0 1 1 1 0 Giardia variant-specific surface protein DUF1628 PF07790.6 gi|325967933|ref|YP_004244125.1| - 0.17 12.6 5.0 0.48 11.2 3.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) Alpha-amylase PF00128.19 gi|325967934|ref|YP_004244126.1| - 1e-47 163.0 0.0 4.1e-46 157.8 0.0 2.2 1 1 0 1 1 1 1 Alpha amylase, catalytic domain ThiS PF02597.15 gi|325967935|ref|YP_004244127.1| - 1.7e-12 47.6 0.1 2e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|325967935|ref|YP_004244127.1| - 0.00012 22.0 0.0 0.00014 21.9 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) YukD PF08817.5 gi|325967935|ref|YP_004244127.1| - 0.043 14.3 0.0 0.049 14.1 0.0 1.3 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukD PB1 PF00564.19 gi|325967935|ref|YP_004244127.1| - 0.11 12.1 0.0 0.52 10.0 0.0 1.9 2 0 0 2 2 2 0 PB1 domain tRNA-synt_1f PF01921.13 gi|325967936|ref|YP_004244128.1| - 2.1e-99 332.6 0.1 2.8e-99 332.1 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) HSP33 PF01430.14 gi|325967936|ref|YP_004244128.1| - 0.2 10.7 0.3 0.65 9.0 0.1 1.8 2 0 0 2 2 2 0 Hsp33 protein zf-CCHC_4 PF14392.1 gi|325967936|ref|YP_004244128.1| - 7.8 6.2 6.2 32 4.2 0.3 3.1 3 0 0 3 3 3 0 Zinc knuckle DUF1211 PF06736.6 gi|325967937|ref|YP_004244129.1| - 0.31 11.1 6.3 0.69 10.0 4.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1211) TMEM169 PF15052.1 gi|325967937|ref|YP_004244129.1| - 3.8 7.4 11.7 0.13 12.1 2.1 2.2 1 1 1 2 2 2 0 TMEM169 protein family PIG-P PF08510.7 gi|325967937|ref|YP_004244129.1| - 4 7.0 9.1 0.31 10.6 2.9 1.7 1 1 1 2 2 2 0 PIG-P DUF3112 PF11309.3 gi|325967937|ref|YP_004244129.1| - 5.9 6.6 9.9 7.3 6.3 6.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) 4HB_MCP_1 PF12729.2 gi|325967937|ref|YP_004244129.1| - 6.4 6.0 5.7 0.67 9.2 0.3 1.9 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction Tetraspannin PF00335.15 gi|325967937|ref|YP_004244129.1| - 7.1 5.8 11.2 8.4 5.5 7.8 1.1 1 0 0 1 1 1 0 Tetraspanin family Cyt_c_ox_IV PF12270.3 gi|325967937|ref|YP_004244129.1| - 9.4 5.9 8.5 0.68 9.6 1.6 1.9 1 1 0 2 2 2 0 Cytochrome c oxidase subunit IV DUF3552 PF12072.3 gi|325967938|ref|YP_004244130.1| - 4.3e-07 29.3 106.5 0.0013 17.9 12.4 6.3 2 2 4 6 6 6 4 Domain of unknown function (DUF3552) Reo_sigmaC PF04582.7 gi|325967938|ref|YP_004244130.1| - 1.6e-06 27.5 41.8 0.0081 15.3 6.8 4.9 1 1 4 5 5 5 4 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|325967938|ref|YP_004244130.1| - 3.3e-06 25.8 74.6 0.00019 20.0 12.1 3.2 1 1 2 3 3 3 3 AAA domain IncA PF04156.9 gi|325967938|ref|YP_004244130.1| - 9.3e-06 25.3 98.8 0.0089 15.6 17.0 5.2 1 1 4 5 5 5 4 IncA protein DUF869 PF05911.6 gi|325967938|ref|YP_004244130.1| - 0.00011 20.6 33.1 0.00011 20.6 22.9 3.2 1 1 2 3 3 3 1 Plant protein of unknown function (DUF869) NPV_P10 PF05531.7 gi|325967938|ref|YP_004244130.1| - 0.00043 20.4 47.9 0.83 9.9 1.9 7.5 3 2 3 6 6 6 2 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|325967938|ref|YP_004244130.1| - 0.00047 19.9 58.5 0.41 10.4 10.4 6.3 1 1 3 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|325967938|ref|YP_004244130.1| - 0.00051 18.7 95.1 0.32 9.6 20.3 4.6 1 1 3 4 4 4 3 Spc7 kinetochore protein MscS_porin PF12795.2 gi|325967938|ref|YP_004244130.1| - 0.00074 18.9 85.6 0.23 10.7 8.3 6.1 1 1 4 5 5 5 4 Mechanosensitive ion channel porin domain DUF948 PF06103.6 gi|325967938|ref|YP_004244130.1| - 0.0016 18.2 47.4 0.03 14.1 1.3 6.9 4 2 3 7 7 7 3 Bacterial protein of unknown function (DUF948) MCPsignal PF00015.16 gi|325967938|ref|YP_004244130.1| - 0.0028 17.2 7.4 0.0028 17.2 5.1 4.5 3 1 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SNARE PF05739.14 gi|325967938|ref|YP_004244130.1| - 0.015 14.9 1.7 0.015 14.9 1.2 7.0 6 4 1 7 7 7 0 SNARE domain MtrB PF05440.7 gi|325967938|ref|YP_004244130.1| - 0.18 11.8 4.7 1.5 8.8 0.1 4.2 2 2 2 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF4200 PF13863.1 gi|325967938|ref|YP_004244130.1| - 0.37 10.7 97.4 1.9 8.4 3.1 6.9 1 1 6 7 7 7 0 Domain of unknown function (DUF4200) HrpB7 PF09486.5 gi|325967938|ref|YP_004244130.1| - 0.83 9.5 50.3 0.3 11.0 8.5 6.4 2 2 4 6 6 5 0 Bacterial type III secretion protein (HrpB7) IFT57 PF10498.4 gi|325967938|ref|YP_004244130.1| - 0.95 8.1 79.0 0.23 10.1 3.6 5.6 1 1 5 6 6 6 0 Intra-flagellar transport protein 57 AAA_27 PF13514.1 gi|325967938|ref|YP_004244130.1| - 1.5 6.4 72.9 0.59 7.7 27.5 3.2 1 1 1 2 2 2 0 AAA domain Laminin_II PF06009.7 gi|325967938|ref|YP_004244130.1| - 1.8 8.3 72.8 0.068 12.9 8.2 6.0 1 1 3 5 5 5 0 Laminin Domain II FliD_N PF02465.13 gi|325967938|ref|YP_004244130.1| - 2.5 8.5 49.1 2.1 8.7 2.0 6.9 3 2 2 5 5 4 0 Flagellar hook-associated protein 2 N-terminus DUF3584 PF12128.3 gi|325967938|ref|YP_004244130.1| - 2.6 5.2 73.6 0.87 6.8 5.3 2.7 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) LXG PF04740.7 gi|325967938|ref|YP_004244130.1| - 2.7 7.7 60.5 0.012 15.3 10.6 5.8 1 1 3 5 5 5 0 LXG domain of WXG superfamily WXG100 PF06013.7 gi|325967938|ref|YP_004244130.1| - 3.5 7.7 34.8 0.46 10.5 2.6 7.9 4 3 4 8 8 8 0 Proteins of 100 residues with WXG ATG16 PF08614.6 gi|325967938|ref|YP_004244130.1| - 3.9 7.2 94.0 3.7 7.3 25.7 5.9 1 1 5 6 6 6 0 Autophagy protein 16 (ATG16) ERM PF00769.14 gi|325967938|ref|YP_004244130.1| - 5.5 6.4 97.9 0.15 11.5 14.8 4.9 1 1 3 5 5 5 0 Ezrin/radixin/moesin family Atg14 PF10186.4 gi|325967938|ref|YP_004244130.1| - 5.7 5.8 83.7 0.16 10.9 5.5 4.3 1 1 3 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 V_ATPase_I PF01496.14 gi|325967938|ref|YP_004244130.1| - 6.4 4.5 70.0 2.2 6.0 18.2 4.0 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family Laminin_II PF06009.7 gi|325967939|ref|YP_004244131.1| - 7.2e-06 25.8 6.1 0.0033 17.1 1.0 2.1 2 0 0 2 2 2 2 Laminin Domain II Baculo_PEP_C PF04513.7 gi|325967939|ref|YP_004244131.1| - 1.1e-05 25.3 13.2 0.00029 20.6 1.9 2.6 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.4 gi|325967939|ref|YP_004244131.1| - 2.6e-05 24.2 6.3 0.075 13.1 0.2 3.3 2 1 2 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|325967939|ref|YP_004244131.1| - 6.5e-05 22.2 9.3 0.007 15.5 0.7 1.8 1 1 1 2 2 2 2 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|325967939|ref|YP_004244131.1| - 0.00017 20.2 0.5 0.00017 20.2 0.4 1.8 1 1 1 2 2 2 2 AAA domain MitMem_reg PF13012.1 gi|325967939|ref|YP_004244131.1| - 0.00038 20.5 6.8 0.0095 16.0 1.3 2.2 1 1 1 2 2 2 1 Maintenance of mitochondrial structure and function Spectrin PF00435.16 gi|325967939|ref|YP_004244131.1| - 0.00073 19.7 1.1 0.63 10.3 0.2 2.6 2 1 0 2 2 2 1 Spectrin repeat IL6 PF00489.12 gi|325967939|ref|YP_004244131.1| - 0.00093 18.8 1.0 0.073 12.6 0.1 2.1 1 1 1 2 2 2 1 Interleukin-6/G-CSF/MGF family Occludin_ELL PF07303.8 gi|325967939|ref|YP_004244131.1| - 0.001 19.7 1.9 0.58 10.9 0.2 2.5 2 1 1 3 3 2 1 Occludin homology domain NPV_P10 PF05531.7 gi|325967939|ref|YP_004244131.1| - 0.0012 19.0 10.7 0.047 13.9 0.5 3.0 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein MscS_porin PF12795.2 gi|325967939|ref|YP_004244131.1| - 0.0014 17.9 8.5 0.0021 17.3 1.3 2.6 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain COG2 PF06148.6 gi|325967939|ref|YP_004244131.1| - 0.0019 18.0 7.7 0.1 12.4 0.7 2.7 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 MCPsignal PF00015.16 gi|325967939|ref|YP_004244131.1| - 0.0019 17.7 5.7 0.046 13.2 0.3 2.3 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Snapin_Pallidin PF14712.1 gi|325967939|ref|YP_004244131.1| - 0.0027 17.9 7.8 1.1 9.5 0.2 3.2 1 1 2 3 3 3 3 Snapin/Pallidin Spc7 PF08317.6 gi|325967939|ref|YP_004244131.1| - 0.003 16.2 8.6 0.015 14.0 5.9 1.9 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF1664 PF07889.7 gi|325967939|ref|YP_004244131.1| - 0.0038 17.0 6.1 0.037 13.8 0.1 2.8 2 1 1 3 3 3 1 Protein of unknown function (DUF1664) YPEB PF14620.1 gi|325967939|ref|YP_004244131.1| - 0.0042 16.1 1.6 0.8 8.6 0.1 2.1 2 0 0 2 2 2 1 YpeB sporulation Syntaxin_2 PF14523.1 gi|325967939|ref|YP_004244131.1| - 0.0058 16.6 6.7 0.13 12.2 0.3 2.5 1 1 1 2 2 2 1 Syntaxin-like protein AAA_27 PF13514.1 gi|325967939|ref|YP_004244131.1| - 0.0065 14.2 0.3 0.0087 13.8 0.2 1.2 1 0 0 1 1 1 1 AAA domain MtrB PF05440.7 gi|325967939|ref|YP_004244131.1| - 0.013 15.5 0.4 0.12 12.4 0.0 2.4 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF2408 PF10303.4 gi|325967939|ref|YP_004244131.1| - 0.013 15.5 6.0 0.12 12.4 2.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Noelin-1 PF12308.3 gi|325967939|ref|YP_004244131.1| - 0.014 15.2 0.7 0.66 9.7 0.0 2.3 2 0 0 2 2 2 0 Neurogenesis glycoprotein Vps5 PF09325.5 gi|325967939|ref|YP_004244131.1| - 0.014 14.6 4.3 0.069 12.3 0.7 2.5 1 1 2 3 3 3 0 Vps5 C terminal like Tweety PF04906.8 gi|325967939|ref|YP_004244131.1| - 0.017 13.5 3.7 0.025 12.9 1.2 1.9 1 1 1 2 2 2 0 Tweety Laminin_I PF06008.9 gi|325967939|ref|YP_004244131.1| - 0.018 14.3 4.5 0.037 13.3 3.1 1.7 1 1 0 1 1 1 0 Laminin Domain I DUF812 PF05667.6 gi|325967939|ref|YP_004244131.1| - 0.02 13.4 4.3 0.026 13.0 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) FliJ PF02050.11 gi|325967939|ref|YP_004244131.1| - 0.025 14.6 0.9 0.21 11.6 0.0 2.4 1 1 1 2 2 2 0 Flagellar FliJ protein IncA PF04156.9 gi|325967939|ref|YP_004244131.1| - 0.025 14.1 6.5 1.1 8.8 0.4 2.2 1 1 1 2 2 2 0 IncA protein DUF3585 PF12130.3 gi|325967939|ref|YP_004244131.1| - 0.027 14.3 3.2 0.11 12.3 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3585) SCP-1 PF05483.7 gi|325967939|ref|YP_004244131.1| - 0.03 12.1 5.4 0.038 11.7 3.8 1.0 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) DUF2400 PF09674.5 gi|325967939|ref|YP_004244131.1| - 0.036 13.7 1.1 1.6 8.3 0.1 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) Lip_prot_lig_C PF10437.4 gi|325967939|ref|YP_004244131.1| - 0.039 13.6 0.9 4.8 6.9 0.1 2.6 2 1 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus TetR PF13972.1 gi|325967939|ref|YP_004244131.1| - 0.048 13.0 0.1 0.76 9.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial transcriptional repressor Nup54 PF13874.1 gi|325967939|ref|YP_004244131.1| - 0.049 13.2 7.0 0.072 12.7 1.1 2.1 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF615 PF04751.9 gi|325967939|ref|YP_004244131.1| - 0.05 13.2 1.6 0.24 11.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF615) HxlR PF01638.12 gi|325967939|ref|YP_004244131.1| - 0.05 13.2 3.5 1.8 8.2 0.3 3.1 2 1 0 3 3 3 0 HxlR-like helix-turn-helix HHH_8 PF14716.1 gi|325967939|ref|YP_004244131.1| - 0.055 13.6 0.2 2.5 8.3 0.0 3.2 3 1 0 3 3 3 0 Helix-hairpin-helix domain Uds1 PF15456.1 gi|325967939|ref|YP_004244131.1| - 0.057 13.4 4.9 4.3 7.3 0.1 2.7 1 1 0 2 2 2 0 Up-regulated During Septation STAT_alpha PF01017.15 gi|325967939|ref|YP_004244131.1| - 0.069 12.8 2.5 0.3 10.7 1.8 2.2 1 1 0 1 1 1 0 STAT protein, all-alpha domain APG17 PF04108.7 gi|325967939|ref|YP_004244131.1| - 0.073 11.8 4.7 0.11 11.2 3.2 1.3 1 0 0 1 1 1 0 Autophagy protein Apg17 FemAB PF02388.11 gi|325967939|ref|YP_004244131.1| - 0.075 11.7 0.6 0.31 9.6 0.0 1.8 1 1 1 2 2 2 0 FemAB family Fib_alpha PF08702.5 gi|325967939|ref|YP_004244131.1| - 0.087 12.9 8.7 0.042 13.9 1.3 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Prominin PF05478.6 gi|325967939|ref|YP_004244131.1| - 0.091 10.2 7.6 0.53 7.7 1.5 2.0 1 1 1 2 2 2 0 Prominin DUF3450 PF11932.3 gi|325967939|ref|YP_004244131.1| - 0.092 11.9 3.3 1.1 8.4 0.2 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) HsbA PF12296.3 gi|325967939|ref|YP_004244131.1| - 0.12 12.2 2.9 0.93 9.3 0.3 2.7 1 1 1 2 2 2 0 Hydrophobic surface binding protein A HSBP1 PF06825.7 gi|325967939|ref|YP_004244131.1| - 0.12 11.9 2.7 0.28 10.7 0.6 2.3 2 0 0 2 2 2 0 Heat shock factor binding protein 1 YgaB PF14182.1 gi|325967939|ref|YP_004244131.1| - 0.21 11.8 4.1 0.75 10.0 0.4 2.8 1 1 1 3 3 3 0 YgaB-like protein GLE1 PF07817.8 gi|325967939|ref|YP_004244131.1| - 0.22 10.4 1.3 4.5 6.1 0.1 2.1 2 0 0 2 2 2 0 GLE1-like protein UPF0184 PF03670.8 gi|325967939|ref|YP_004244131.1| - 0.25 11.5 6.3 0.15 12.2 0.9 2.8 2 2 1 3 3 2 0 Uncharacterised protein family (UPF0184) FlaC_arch PF05377.6 gi|325967939|ref|YP_004244131.1| - 0.26 11.2 13.8 0.31 10.9 1.8 3.9 4 1 0 4 4 3 0 Flagella accessory protein C (FlaC) Seryl_tRNA_N PF02403.17 gi|325967939|ref|YP_004244131.1| - 0.27 11.2 5.3 4.6 7.2 0.2 2.5 1 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Myosin_tail_1 PF01576.14 gi|325967939|ref|YP_004244131.1| - 0.32 8.6 5.8 1.3 6.6 4.0 1.8 1 1 0 1 1 1 0 Myosin tail Tropomyosin PF00261.15 gi|325967939|ref|YP_004244131.1| - 0.32 10.0 3.9 0.86 8.6 0.2 2.3 1 1 0 2 2 2 0 Tropomyosin Syntaxin PF00804.20 gi|325967939|ref|YP_004244131.1| - 0.34 11.0 8.4 4.7 7.4 1.5 2.8 1 1 1 2 2 2 0 Syntaxin Prefoldin_2 PF01920.15 gi|325967939|ref|YP_004244131.1| - 0.34 10.6 7.0 2.4 7.9 0.3 3.0 2 1 1 3 3 3 0 Prefoldin subunit Corona_S2 PF01601.11 gi|325967939|ref|YP_004244131.1| - 0.39 8.7 3.9 1.4 6.9 0.1 2.1 1 1 0 2 2 2 0 Coronavirus S2 glycoprotein DUF948 PF06103.6 gi|325967939|ref|YP_004244131.1| - 0.4 10.5 6.5 2 8.3 0.2 2.9 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) WEMBL PF05701.6 gi|325967939|ref|YP_004244131.1| - 0.41 9.0 6.1 1.5 7.1 4.1 1.8 1 1 0 1 1 1 0 Weak chloroplast movement under blue light Tropomyosin_1 PF12718.2 gi|325967939|ref|YP_004244131.1| - 0.41 10.4 2.9 1.2 8.9 0.1 2.1 2 0 0 2 2 2 0 Tropomyosin like DUF489 PF04356.7 gi|325967939|ref|YP_004244131.1| - 0.41 10.1 3.6 0.69 9.4 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) Sec34 PF04136.10 gi|325967939|ref|YP_004244131.1| - 0.44 10.2 5.0 3.1 7.4 0.3 2.2 1 1 1 2 2 2 0 Sec34-like family Syntaxin-6_N PF09177.6 gi|325967939|ref|YP_004244131.1| - 0.45 10.9 6.5 2.9 8.3 0.6 2.5 1 1 0 2 2 2 0 Syntaxin 6, N-terminal TPR_MLP1_2 PF07926.7 gi|325967939|ref|YP_004244131.1| - 0.55 9.9 5.1 1.2 8.8 0.7 2.3 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein CENP-F_leu_zip PF10473.4 gi|325967939|ref|YP_004244131.1| - 0.57 10.0 9.4 0.26 11.1 1.9 2.6 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Bacillus_HBL PF05791.6 gi|325967939|ref|YP_004244131.1| - 0.64 9.3 4.7 1.2 8.4 0.1 2.2 2 1 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) TBPIP PF07106.8 gi|325967939|ref|YP_004244131.1| - 0.75 9.3 8.2 1.2 8.6 1.1 2.3 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GP41 PF00517.12 gi|325967939|ref|YP_004244131.1| - 0.85 9.1 5.6 0.49 9.9 0.2 2.2 1 1 0 2 2 2 0 Retroviral envelope protein DNA_repr_REX1B PF14966.1 gi|325967939|ref|YP_004244131.1| - 0.89 9.9 3.2 15 6.0 0.1 2.8 1 1 1 3 3 2 0 DNA repair REX1-B XhlA PF10779.4 gi|325967939|ref|YP_004244131.1| - 1 9.3 7.4 0.61 10.0 0.6 2.8 2 1 1 3 3 3 0 Haemolysin XhlA Spc24 PF08286.6 gi|325967939|ref|YP_004244131.1| - 1.2 8.8 7.9 4.7 6.9 1.6 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Matrilin_ccoil PF10393.4 gi|325967939|ref|YP_004244131.1| - 1.3 8.4 4.7 27 4.2 0.2 3.3 3 1 1 4 4 4 0 Trimeric coiled-coil oligomerisation domain of matrilin CorA PF01544.13 gi|325967939|ref|YP_004244131.1| - 1.3 7.9 7.1 4.7 6.1 4.7 1.9 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF972 PF06156.8 gi|325967939|ref|YP_004244131.1| - 1.5 9.1 6.1 5.1 7.4 0.4 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Vps52 PF04129.7 gi|325967939|ref|YP_004244131.1| - 1.6 7.1 7.5 3.4 6.0 4.5 1.7 1 1 0 1 1 1 0 Vps52 / Sac2 family DUF4349 PF14257.1 gi|325967939|ref|YP_004244131.1| - 1.9 7.6 9.2 3.4 6.8 1.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) Cortex-I_coil PF09304.5 gi|325967939|ref|YP_004244131.1| - 2.2 8.3 6.5 13 5.9 0.3 2.3 1 1 0 2 2 2 0 Cortexillin I, coiled coil Filo_VP35 PF02097.10 gi|325967939|ref|YP_004244131.1| - 2.2 7.3 5.4 1.9 7.5 0.3 2.0 1 1 0 2 2 2 0 Filoviridae VP35 SNARE PF05739.14 gi|325967939|ref|YP_004244131.1| - 2.4 7.9 9.7 2.8 7.7 0.3 3.8 4 1 0 4 4 3 0 SNARE domain Vps53_N PF04100.7 gi|325967939|ref|YP_004244131.1| - 2.9 6.5 6.8 23 3.5 4.7 1.9 1 1 0 1 1 1 0 Vps53-like, N-terminal Med4 PF10018.4 gi|325967939|ref|YP_004244131.1| - 3 7.1 5.9 6.7 6.0 2.8 2.2 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 COG5 PF10392.4 gi|325967939|ref|YP_004244131.1| - 3.2 7.7 7.0 2.2 8.2 0.6 2.7 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DASH_Dad4 PF08650.5 gi|325967939|ref|YP_004244131.1| - 3.5 7.5 8.0 0.32 10.9 0.8 2.4 2 1 0 2 2 2 0 DASH complex subunit Dad4 EMP24_GP25L PF01105.19 gi|325967939|ref|YP_004244131.1| - 4 7.1 6.1 12 5.5 0.4 2.8 2 2 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Hexapep PF00132.19 gi|325967940|ref|YP_004244132.1| - 2.7e-37 124.6 57.4 3.1e-10 39.0 3.5 5.4 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|325967940|ref|YP_004244132.1| - 1.3e-20 72.6 37.5 2e-11 43.2 3.4 5.3 3 1 1 5 5 5 4 Hexapeptide repeat of succinyl-transferase AAA PF00004.24 gi|325967941|ref|YP_004244133.1| - 1.9e-99 329.0 0.0 6.7e-50 168.6 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|325967941|ref|YP_004244133.1| - 6e-30 103.0 0.1 5.2e-29 100.0 0.2 2.6 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|325967941|ref|YP_004244133.1| - 3.9e-15 55.5 0.0 2.5e-07 30.0 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|325967941|ref|YP_004244133.1| - 1.5e-14 54.8 0.2 2.2e-07 31.7 0.0 3.4 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|325967941|ref|YP_004244133.1| - 5.9e-14 52.3 0.2 5.9e-06 26.4 0.0 4.3 2 2 1 3 3 3 2 AAA domain AAA_2 PF07724.9 gi|325967941|ref|YP_004244133.1| - 2e-13 50.6 0.0 3.9e-07 30.1 0.0 2.6 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|325967941|ref|YP_004244133.1| - 9.1e-13 48.6 0.1 1.1e-05 25.4 0.0 3.6 3 1 0 3 3 2 2 AAA ATPase domain AAA_5 PF07728.9 gi|325967941|ref|YP_004244133.1| - 1.1e-12 47.9 0.6 5.7e-05 22.8 0.1 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|325967941|ref|YP_004244133.1| - 2e-12 47.1 0.0 1.1e-05 25.3 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|325967941|ref|YP_004244133.1| - 9.4e-12 44.9 0.0 8e-06 25.7 0.0 2.8 2 1 1 3 3 2 2 AAA domain TIP49 PF06068.8 gi|325967941|ref|YP_004244133.1| - 2.4e-10 39.7 0.0 0.00029 19.6 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|325967941|ref|YP_004244133.1| - 5.5e-10 38.6 0.1 0.00019 20.6 0.0 3.2 4 0 0 4 4 3 2 Zeta toxin IstB_IS21 PF01695.12 gi|325967941|ref|YP_004244133.1| - 9.2e-10 38.2 0.3 0.0011 18.4 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|325967941|ref|YP_004244133.1| - 5.9e-09 36.0 0.1 0.001 19.0 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|325967941|ref|YP_004244133.1| - 7.5e-09 35.2 2.6 0.00082 19.0 0.0 3.3 3 0 0 3 3 2 2 Part of AAA domain AAA_18 PF13238.1 gi|325967941|ref|YP_004244133.1| - 1.6e-08 34.8 0.1 0.0039 17.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.12 gi|325967941|ref|YP_004244133.1| - 1.9e-07 30.5 0.0 6e-07 29.0 0.0 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 Sigma54_activat PF00158.21 gi|325967941|ref|YP_004244133.1| - 8.6e-07 28.5 0.1 0.067 12.6 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|325967941|ref|YP_004244133.1| - 9.9e-07 28.1 2.6 0.022 13.8 0.1 2.8 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI Vps4_C PF09336.5 gi|325967941|ref|YP_004244133.1| - 1e-06 28.5 0.7 0.029 14.2 0.0 3.6 3 0 0 3 3 3 2 Vps4 C terminal oligomerisation domain PhoH PF02562.11 gi|325967941|ref|YP_004244133.1| - 2.3e-06 27.0 0.1 0.061 12.5 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.17 gi|325967941|ref|YP_004244133.1| - 5.1e-06 26.6 0.0 0.2 11.8 0.0 3.0 3 0 0 3 3 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|325967941|ref|YP_004244133.1| - 5.2e-06 26.5 0.0 0.052 13.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain DUF815 PF05673.8 gi|325967941|ref|YP_004244133.1| - 9.4e-06 24.7 0.0 0.043 12.7 0.0 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|325967941|ref|YP_004244133.1| - 1.1e-05 24.9 10.0 0.43 9.9 0.1 4.7 2 2 3 5 5 5 3 AAA domain KaiC PF06745.8 gi|325967941|ref|YP_004244133.1| - 1.6e-05 24.1 0.5 0.31 10.1 0.0 3.4 2 1 1 3 3 3 2 KaiC ABC_tran PF00005.22 gi|325967941|ref|YP_004244133.1| - 1.9e-05 24.9 0.0 0.17 12.1 0.0 2.8 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|325967941|ref|YP_004244133.1| - 2.6e-05 23.9 0.1 0.41 10.2 0.0 3.8 4 0 0 4 4 4 2 NACHT domain AAA_24 PF13479.1 gi|325967941|ref|YP_004244133.1| - 4.4e-05 23.1 0.1 0.42 10.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|325967941|ref|YP_004244133.1| - 6.2e-05 22.8 0.6 0.17 11.5 0.1 3.8 2 2 2 4 4 4 1 Archaeal ATPase AAA_3 PF07726.6 gi|325967941|ref|YP_004244133.1| - 0.00023 20.7 0.0 0.61 9.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|325967941|ref|YP_004244133.1| - 0.00049 19.1 0.0 0.29 10.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.20 gi|325967941|ref|YP_004244133.1| - 0.00051 19.5 0.0 0.29 10.6 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Guanylate_kin PF00625.16 gi|325967941|ref|YP_004244133.1| - 0.00055 19.4 0.3 11 5.3 0.0 4.3 2 2 2 4 4 4 0 Guanylate kinase AAA_11 PF13086.1 gi|325967941|ref|YP_004244133.1| - 0.00062 19.4 0.0 0.68 9.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain Bac_DnaA PF00308.13 gi|325967941|ref|YP_004244133.1| - 0.0007 19.2 0.0 0.53 9.8 0.0 3.2 4 0 0 4 4 3 1 Bacterial dnaA protein NTPase_1 PF03266.10 gi|325967941|ref|YP_004244133.1| - 0.001 18.8 3.0 3 7.5 0.0 4.3 3 1 1 4 4 3 0 NTPase T2SE PF00437.15 gi|325967941|ref|YP_004244133.1| - 0.0012 17.7 0.0 1.3 7.8 0.0 2.8 2 1 0 2 2 2 2 Type II/IV secretion system protein AAA_30 PF13604.1 gi|325967941|ref|YP_004244133.1| - 0.0014 18.2 0.2 1.5 8.3 0.0 3.2 3 0 0 3 3 2 1 AAA domain Parvo_NS1 PF01057.12 gi|325967941|ref|YP_004244133.1| - 0.0016 17.3 0.0 1.6 7.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 SKI PF01202.17 gi|325967941|ref|YP_004244133.1| - 0.0017 18.2 0.0 2.9 7.7 0.0 2.9 3 0 0 3 3 2 0 Shikimate kinase ResIII PF04851.10 gi|325967941|ref|YP_004244133.1| - 0.0021 17.9 0.0 2.7 7.7 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit NB-ARC PF00931.17 gi|325967941|ref|YP_004244133.1| - 0.0068 15.2 0.0 3.9 6.2 0.0 2.7 3 0 0 3 3 3 0 NB-ARC domain PduV-EutP PF10662.4 gi|325967941|ref|YP_004244133.1| - 0.012 15.1 0.0 2.5 7.5 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation UPF0079 PF02367.12 gi|325967941|ref|YP_004244133.1| - 0.014 15.0 0.0 7.5 6.2 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Viral_helicase1 PF01443.13 gi|325967941|ref|YP_004244133.1| - 0.021 14.3 0.0 0.45 9.9 0.0 2.5 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|325967941|ref|YP_004244133.1| - 0.022 14.2 0.0 6.9 6.2 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRPRB PF09439.5 gi|325967941|ref|YP_004244133.1| - 0.037 13.2 0.0 3.1 6.9 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit KTI12 PF08433.5 gi|325967941|ref|YP_004244133.1| - 0.05 12.8 0.1 12 5.0 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|325967941|ref|YP_004244133.1| - 0.062 12.7 0.8 17 4.7 0.0 3.2 2 1 1 3 3 3 0 AAA-like domain Miro PF08477.8 gi|325967941|ref|YP_004244133.1| - 0.092 13.2 0.0 16 6.0 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein cobW PF02492.14 gi|325967941|ref|YP_004244133.1| - 0.1 12.0 0.2 15 5.0 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ACP_syn_III_C PF08541.5 gi|325967942|ref|YP_004244134.1| - 2.6e-14 52.9 0.0 7.3e-14 51.5 0.0 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|325967942|ref|YP_004244134.1| - 3.2e-05 23.5 0.2 0.00057 19.4 0.0 2.0 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|325967942|ref|YP_004244134.1| - 0.00015 21.4 0.0 0.00029 20.4 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.18 gi|325967942|ref|YP_004244134.1| - 0.00022 20.3 0.0 0.00041 19.4 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|325967942|ref|YP_004244134.1| - 0.00089 18.8 0.9 0.0043 16.6 0.1 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.21 gi|325967942|ref|YP_004244134.1| - 0.036 13.5 0.2 0.7 9.3 0.0 2.3 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain HTH_24 PF13412.1 gi|325967943|ref|YP_004244135.1| - 1.3e-08 34.1 1.6 1.3e-08 34.0 0.3 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.6 gi|325967943|ref|YP_004244135.1| - 6.3e-07 29.1 0.0 9.3e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Mga PF08280.6 gi|325967943|ref|YP_004244135.1| - 4.3e-06 26.3 0.6 6.2e-06 25.8 0.4 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain FaeA PF04703.7 gi|325967943|ref|YP_004244135.1| - 7e-06 26.1 0.0 9.9e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|325967943|ref|YP_004244135.1| - 3.8e-05 23.3 0.1 6.9e-05 22.4 0.1 1.5 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|325967943|ref|YP_004244135.1| - 4.6e-05 22.9 0.0 7.6e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|325967943|ref|YP_004244135.1| - 6e-05 22.6 0.1 0.00013 21.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|325967943|ref|YP_004244135.1| - 6e-05 22.9 0.1 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|325967943|ref|YP_004244135.1| - 0.00069 19.3 0.2 0.0012 18.6 0.0 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|325967943|ref|YP_004244135.1| - 0.0014 18.9 0.0 0.0027 17.9 0.0 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|325967943|ref|YP_004244135.1| - 0.0017 18.1 0.2 0.0021 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.1 gi|325967943|ref|YP_004244135.1| - 0.0018 18.4 0.0 0.0021 18.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.5 gi|325967943|ref|YP_004244135.1| - 0.0019 17.7 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|325967943|ref|YP_004244135.1| - 0.0024 17.9 0.5 0.003 17.6 0.3 1.1 1 0 0 1 1 1 1 Penicillinase repressor TFIIE_alpha PF02002.12 gi|325967943|ref|YP_004244135.1| - 0.0027 17.1 2.3 0.011 15.1 1.6 1.8 1 1 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|325967943|ref|YP_004244135.1| - 0.0029 16.9 0.5 0.055 12.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|325967943|ref|YP_004244135.1| - 0.0043 16.6 0.2 0.0066 16.0 0.1 1.3 1 0 0 1 1 1 1 HTH domain Mrr_N PF14338.1 gi|325967943|ref|YP_004244135.1| - 0.0051 16.8 0.2 0.01 15.9 0.1 1.5 1 1 0 1 1 1 1 Mrr N-terminal domain MarR PF01047.17 gi|325967943|ref|YP_004244135.1| - 0.0091 15.6 0.9 0.011 15.4 0.1 1.4 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|325967943|ref|YP_004244135.1| - 0.01 15.3 0.0 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.7 gi|325967943|ref|YP_004244135.1| - 0.018 14.5 0.1 0.033 13.7 0.0 1.5 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF2250 PF10007.4 gi|325967943|ref|YP_004244135.1| - 0.026 14.4 0.2 0.051 13.4 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_41 PF14502.1 gi|325967943|ref|YP_004244135.1| - 0.026 14.1 0.5 0.73 9.4 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|325967943|ref|YP_004244135.1| - 0.038 14.0 0.0 0.049 13.7 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator RNA_pol_Rpc34 PF05158.7 gi|325967943|ref|YP_004244135.1| - 0.07 12.3 0.3 0.069 12.3 0.2 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit B-block_TFIIIC PF04182.7 gi|325967943|ref|YP_004244135.1| - 0.072 12.9 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Mnd1 PF03962.10 gi|325967943|ref|YP_004244135.1| - 0.074 12.7 1.6 0.15 11.7 1.1 1.6 1 1 0 1 1 1 0 Mnd1 family DUF4423 PF14394.1 gi|325967943|ref|YP_004244135.1| - 0.088 12.3 0.2 0.14 11.6 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2582 PF10771.4 gi|325967943|ref|YP_004244135.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2582) CTP-dep_RFKase PF01982.11 gi|325967944|ref|YP_004244136.1| - 3e-45 152.7 0.0 4.6e-45 152.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 B-block_TFIIIC PF04182.7 gi|325967944|ref|YP_004244136.1| - 0.0022 17.8 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|325967944|ref|YP_004244136.1| - 0.005 16.5 0.0 0.0092 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family Antitoxin-MazE PF04014.13 gi|325967944|ref|YP_004244136.1| - 0.037 13.7 0.0 1.4 8.7 0.0 2.7 2 0 0 2 2 2 0 Antidote-toxin recognition MazE HTH_24 PF13412.1 gi|325967944|ref|YP_004244136.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Aldolase_II PF00596.16 gi|325967945|ref|YP_004244137.1| - 8.5e-45 152.6 0.0 9.6e-45 152.4 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Amidohydro_2 PF04909.9 gi|325967946|ref|YP_004244138.1| - 1.7e-36 126.1 0.1 2e-36 125.9 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase Pox_A3L PF05288.6 gi|325967946|ref|YP_004244138.1| - 0.0039 16.8 0.1 0.0075 15.9 0.1 1.5 1 0 0 1 1 1 1 Poxvirus A3L Protein AP_endonuc_2 PF01261.19 gi|325967946|ref|YP_004244138.1| - 0.014 14.6 0.0 0.042 13.1 0.0 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel TM_helix PF05552.7 gi|325967947|ref|YP_004244139.1| - 5.1e-11 42.0 16.0 6.8e-07 28.8 4.4 5.2 4 2 2 6 6 6 2 Conserved TM helix SNARE_assoc PF09335.6 gi|325967948|ref|YP_004244140.1| - 0.00015 21.9 4.4 0.00015 21.9 3.0 2.0 1 1 1 2 2 2 1 SNARE associated Golgi protein Lon_C PF05362.8 gi|325967949|ref|YP_004244141.1| - 2.3e-10 40.1 0.0 3.8e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.1 gi|325967949|ref|YP_004244141.1| - 0.025 14.0 0.0 0.083 12.4 0.0 1.9 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase MscS_porin PF12795.2 gi|325967949|ref|YP_004244141.1| - 0.081 12.2 4.7 0.039 13.2 1.4 1.8 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain OTCace PF00185.19 gi|325967950|ref|YP_004244142.1| - 1.7e-54 183.9 0.0 2.3e-52 177.0 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|325967950|ref|YP_004244142.1| - 2.8e-47 159.9 0.0 4.4e-47 159.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XdhC_C PF13478.1 gi|325967950|ref|YP_004244142.1| - 0.085 13.1 0.1 0.67 10.2 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain TP6A_N PF04406.9 gi|325967951|ref|YP_004244143.1| - 1.9e-23 81.8 0.1 3.6e-23 80.9 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|325967951|ref|YP_004244143.1| - 0.072 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Mob_synth_C PF06463.8 gi|325967952|ref|YP_004244144.1| - 1.1e-23 83.3 0.0 1.9e-23 82.5 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|325967952|ref|YP_004244144.1| - 2.7e-23 82.9 0.0 3.7e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|325967952|ref|YP_004244144.1| - 9.2e-07 28.9 0.0 2.2e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|325967952|ref|YP_004244144.1| - 2.5e-06 27.6 0.0 4.8e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2024 PF09630.5 gi|325967952|ref|YP_004244144.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2024) NAD_synthase PF02540.12 gi|325967954|ref|YP_004244146.1| - 6.9e-81 270.7 0.0 8e-81 270.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|325967954|ref|YP_004244146.1| - 1.7e-09 36.7 0.0 1.5e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|325967954|ref|YP_004244146.1| - 0.00047 19.4 0.0 0.00087 18.6 0.0 1.5 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|325967954|ref|YP_004244146.1| - 0.0007 19.1 0.0 0.00099 18.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|325967954|ref|YP_004244146.1| - 0.17 11.3 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CN_hydrolase PF00795.17 gi|325967955|ref|YP_004244147.1| - 3.9e-30 104.5 0.0 5.1e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Iso_dh PF00180.15 gi|325967956|ref|YP_004244148.1| - 1e-102 343.6 0.0 1.2e-102 343.4 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TAF PF02969.12 gi|325967956|ref|YP_004244148.1| - 0.18 11.7 0.6 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TP_methylase PF00590.15 gi|325967957|ref|YP_004244149.1| - 5.7e-23 81.7 0.1 6.9e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases UPRTase PF14681.1 gi|325967957|ref|YP_004244149.1| - 0.0063 15.7 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF504 PF04457.7 gi|325967958|ref|YP_004244150.1| - 1.2e-15 57.4 1.5 1.5e-15 57.0 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF504) YcxB PF14317.1 gi|325967958|ref|YP_004244150.1| - 0.094 11.9 0.1 0.77 9.0 0.0 2.1 2 0 0 2 2 2 0 YcxB-like protein NusG PF02357.14 gi|325967958|ref|YP_004244150.1| - 0.12 12.6 0.1 9.6 6.5 0.0 2.0 1 1 1 2 2 2 0 Transcription termination factor nusG 2-Hacid_dh_C PF02826.14 gi|325967959|ref|YP_004244151.1| - 9.5e-65 217.0 0.0 1.3e-64 216.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|325967959|ref|YP_004244151.1| - 2.9e-29 101.2 0.0 3.5e-29 100.9 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|325967959|ref|YP_004244151.1| - 2.7e-09 37.0 0.0 8e-09 35.5 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|325967959|ref|YP_004244151.1| - 0.00024 21.4 0.0 0.00057 20.2 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|325967959|ref|YP_004244151.1| - 0.01 15.5 0.1 0.052 13.2 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|325967959|ref|YP_004244151.1| - 0.029 14.6 0.0 0.075 13.3 0.0 1.7 1 0 0 1 1 1 0 XdhC Rossmann domain IlvN PF07991.7 gi|325967959|ref|YP_004244151.1| - 0.055 12.8 0.0 0.17 11.2 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|325967959|ref|YP_004244151.1| - 0.083 13.1 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NUDIX PF00293.23 gi|325967960|ref|YP_004244152.1| - 5.1e-14 52.0 0.0 6.6e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.1 gi|325967960|ref|YP_004244152.1| - 0.028 13.9 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 DBC1 Cyclase PF04199.8 gi|325967961|ref|YP_004244153.1| - 1.8e-30 105.8 0.0 2.3e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase ADH_N PF08240.7 gi|325967963|ref|YP_004244155.1| - 5.1e-13 48.7 0.0 8.6e-13 48.0 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|325967963|ref|YP_004244155.1| - 5.9e-06 25.8 0.1 1e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|325967963|ref|YP_004244155.1| - 2.6e-05 24.3 0.0 4.8e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Gp_dh_N PF00044.19 gi|325967963|ref|YP_004244155.1| - 0.061 13.2 0.1 0.54 10.1 0.0 2.1 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|325967963|ref|YP_004244155.1| - 0.11 12.4 0.1 0.2 11.5 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NDK PF00334.14 gi|325967965|ref|YP_004244157.1| - 1.7e-42 144.3 0.0 2.1e-22 79.3 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Aminotran_3 PF00202.16 gi|325967966|ref|YP_004244158.1| - 4.3e-64 216.5 0.0 7.3e-64 215.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|325967966|ref|YP_004244158.1| - 0.00046 19.2 0.0 0.00062 18.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II GlutR_N PF05201.10 gi|325967967|ref|YP_004244159.1| - 1.4e-21 76.6 0.0 6e-21 74.6 0.0 2.0 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|325967967|ref|YP_004244159.1| - 9.6e-17 61.3 0.6 2.1e-16 60.2 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|325967967|ref|YP_004244159.1| - 1.2e-15 57.2 2.9 2.4e-15 56.2 2.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|325967967|ref|YP_004244159.1| - 2.9e-05 24.4 0.2 0.00041 20.7 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|325967967|ref|YP_004244159.1| - 6.4e-05 23.1 0.1 0.00019 21.5 0.0 1.8 1 1 1 2 2 2 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|325967967|ref|YP_004244159.1| - 0.00045 19.3 0.0 0.00062 18.8 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|325967967|ref|YP_004244159.1| - 0.001 19.0 0.6 0.0045 16.9 0.0 2.5 2 1 0 2 2 2 1 TrkA-N domain ThiF PF00899.16 gi|325967967|ref|YP_004244159.1| - 0.007 16.1 0.4 0.064 13.0 0.0 2.4 2 0 0 2 2 2 1 ThiF family Pyr_redox_3 PF13738.1 gi|325967967|ref|YP_004244159.1| - 0.06 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|325967967|ref|YP_004244159.1| - 0.092 11.6 0.2 0.23 10.3 0.1 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase Peptidase_M20 PF01546.23 gi|325967968|ref|YP_004244160.1| - 5.5e-26 91.2 0.0 6.8e-26 90.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|325967968|ref|YP_004244160.1| - 3.8e-19 68.4 0.0 6.4e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|325967968|ref|YP_004244160.1| - 0.08 12.6 0.0 0.17 11.5 0.0 1.6 2 0 0 2 2 2 0 Peptidase family M28 THUMP PF02926.12 gi|325967969|ref|YP_004244161.1| - 5.7e-15 55.4 0.0 9.9e-15 54.6 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Ribosomal_L15e PF00827.12 gi|325967971|ref|YP_004244163.1| - 1.2e-62 210.8 8.5 1.3e-62 210.6 5.9 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.12 gi|325967972|ref|YP_004244164.1| - 2.2e-23 82.5 0.1 2.5e-23 82.3 0.1 1.0 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.11 gi|325967973|ref|YP_004244165.1| - 2.3e-15 56.1 0.1 3.1e-15 55.6 0.1 1.1 1 0 0 1 1 1 1 RNase P subunit p30 Peptidase_C47 PF05543.8 gi|325967973|ref|YP_004244165.1| - 0.017 14.5 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 Staphopain peptidase C47 RNase_P_Rpp14 PF01900.14 gi|325967974|ref|YP_004244166.1| - 0.003 17.4 0.1 0.0042 16.9 0.1 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Flavin_Reduct PF01613.13 gi|325967975|ref|YP_004244167.1| - 2.1e-41 141.3 0.0 2.3e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain ABC_tran PF00005.22 gi|325967976|ref|YP_004244168.1| - 3e-31 108.5 0.0 4e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|325967976|ref|YP_004244168.1| - 1e-20 73.8 1.1 1.7e-20 73.1 0.8 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|325967976|ref|YP_004244168.1| - 3.9e-08 33.5 0.2 1.5e-06 28.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|325967976|ref|YP_004244168.1| - 0.00022 21.3 0.1 0.001 19.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|325967976|ref|YP_004244168.1| - 0.00094 19.4 0.0 0.0019 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325967976|ref|YP_004244168.1| - 0.0038 16.7 0.0 0.0065 15.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|325967976|ref|YP_004244168.1| - 0.0047 16.6 0.0 0.0094 15.6 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|325967976|ref|YP_004244168.1| - 0.0071 15.5 0.1 0.18 10.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain FtsK_SpoIIIE PF01580.13 gi|325967976|ref|YP_004244168.1| - 0.0072 15.8 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|325967976|ref|YP_004244168.1| - 0.013 15.4 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|325967976|ref|YP_004244168.1| - 0.018 14.2 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|325967976|ref|YP_004244168.1| - 0.019 14.6 0.1 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|325967976|ref|YP_004244168.1| - 0.023 13.2 0.6 0.69 8.3 0.4 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|325967976|ref|YP_004244168.1| - 0.03 13.8 0.0 0.046 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|325967976|ref|YP_004244168.1| - 0.044 14.6 0.1 0.087 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|325967976|ref|YP_004244168.1| - 0.054 13.8 0.0 0.098 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Septin PF00735.13 gi|325967976|ref|YP_004244168.1| - 0.062 12.3 0.0 0.088 11.8 0.0 1.2 1 0 0 1 1 1 0 Septin Fe_bilin_red PF05996.7 gi|325967976|ref|YP_004244168.1| - 0.069 12.6 0.0 0.1 12.0 0.0 1.1 1 0 0 1 1 1 0 Ferredoxin-dependent bilin reductase AAA_15 PF13175.1 gi|325967976|ref|YP_004244168.1| - 0.076 12.0 0.3 0.44 9.5 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF87 PF01935.12 gi|325967976|ref|YP_004244168.1| - 0.083 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_33 PF13671.1 gi|325967976|ref|YP_004244168.1| - 0.085 12.7 0.0 0.12 12.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|325967976|ref|YP_004244168.1| - 0.086 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Pox_A32 PF04665.7 gi|325967976|ref|YP_004244168.1| - 0.1 11.8 0.8 0.2 10.9 0.0 1.7 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_10 PF12846.2 gi|325967976|ref|YP_004244168.1| - 0.2 11.0 0.4 0.45 9.9 0.2 1.7 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|325967977|ref|YP_004244169.1| - 3.5e-31 108.3 0.0 4.9e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|325967977|ref|YP_004244169.1| - 6.6e-21 74.4 0.1 1.1e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|325967977|ref|YP_004244169.1| - 1e-11 45.3 0.1 1.2e-07 31.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325967977|ref|YP_004244169.1| - 7.5e-05 22.0 0.1 0.031 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|325967977|ref|YP_004244169.1| - 8.9e-05 21.7 0.1 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|325967977|ref|YP_004244169.1| - 0.00011 23.0 0.0 0.00023 21.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325967977|ref|YP_004244169.1| - 0.00016 21.7 0.0 0.00023 21.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|325967977|ref|YP_004244169.1| - 0.00017 21.7 0.5 0.0031 17.6 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325967977|ref|YP_004244169.1| - 0.0002 20.7 0.1 0.00043 19.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|325967977|ref|YP_004244169.1| - 0.00072 19.0 0.1 0.0047 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|325967977|ref|YP_004244169.1| - 0.00088 18.9 0.0 0.0017 18.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_25 PF13481.1 gi|325967977|ref|YP_004244169.1| - 0.0012 18.2 0.0 0.003 16.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.1 gi|325967977|ref|YP_004244169.1| - 0.0014 18.6 0.0 0.02 14.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.9 gi|325967977|ref|YP_004244169.1| - 0.002 17.8 0.0 0.021 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|325967977|ref|YP_004244169.1| - 0.0023 18.2 0.2 0.0048 17.2 0.1 1.8 1 1 1 2 2 2 1 AAA domain DUF87 PF01935.12 gi|325967977|ref|YP_004244169.1| - 0.0024 17.7 0.0 0.0056 16.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_15 PF13175.1 gi|325967977|ref|YP_004244169.1| - 0.0047 16.0 0.2 1.7 7.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain MobB PF03205.9 gi|325967977|ref|YP_004244169.1| - 0.0076 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|325967977|ref|YP_004244169.1| - 0.011 15.3 0.0 0.081 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|325967977|ref|YP_004244169.1| - 0.014 15.5 0.0 0.046 13.9 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_13 PF13166.1 gi|325967977|ref|YP_004244169.1| - 0.015 13.7 0.0 1.4 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|325967977|ref|YP_004244169.1| - 0.021 14.5 0.0 0.15 11.7 0.0 2.2 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_33 PF13671.1 gi|325967977|ref|YP_004244169.1| - 0.021 14.7 0.0 0.16 11.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|325967977|ref|YP_004244169.1| - 0.022 14.2 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|325967977|ref|YP_004244169.1| - 0.022 14.1 0.1 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|325967977|ref|YP_004244169.1| - 0.049 13.1 0.0 0.13 11.7 0.0 1.7 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_23 PF13476.1 gi|325967977|ref|YP_004244169.1| - 0.066 13.5 0.1 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|325967977|ref|YP_004244169.1| - 0.068 12.6 0.0 0.068 12.6 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.17 gi|325967977|ref|YP_004244169.1| - 0.082 11.7 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|325967977|ref|YP_004244169.1| - 0.082 12.8 0.0 0.28 11.1 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|325967977|ref|YP_004244169.1| - 0.087 11.3 0.0 1.4 7.4 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.18 gi|325967977|ref|YP_004244169.1| - 0.091 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.17 gi|325967978|ref|YP_004244170.1| - 1.2e-22 80.3 22.4 1.2e-22 80.3 15.5 2.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3876 PF12992.2 gi|325967978|ref|YP_004244170.1| - 0.15 11.9 1.1 0.32 10.9 0.4 1.7 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3876) BPD_transp_1 PF00528.17 gi|325967979|ref|YP_004244171.1| - 2.1e-28 99.1 16.6 2.1e-28 99.1 11.5 2.5 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|325967980|ref|YP_004244172.1| - 2.1e-12 46.5 14.5 1.7e-09 37.0 0.3 3.9 3 1 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Mito_fiss_reg PF05308.6 gi|325967980|ref|YP_004244172.1| - 0.21 10.9 7.2 0.33 10.2 5.0 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator Herpes_gE PF02480.11 gi|325967980|ref|YP_004244172.1| - 1.8 6.7 3.6 0.36 9.0 0.2 1.5 2 0 0 2 2 2 0 Alphaherpesvirus glycoprotein E DUF4345 PF14248.1 gi|325967981|ref|YP_004244173.1| - 0.25 10.7 4.7 0.61 9.5 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4345) COX2_TM PF02790.10 gi|325967981|ref|YP_004244173.1| - 1.8 8.5 10.0 1.5 8.8 0.9 2.4 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain Herpes_U15 PF05613.6 gi|325967981|ref|YP_004244173.1| - 4.7 7.6 6.4 1 9.7 0.5 2.2 2 0 0 2 2 2 0 Human herpesvirus U15 protein DUF2976 PF11190.3 gi|325967981|ref|YP_004244173.1| - 6.2 6.4 8.8 13 5.3 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) Ribosomal_L39 PF00832.15 gi|325967982|ref|YP_004244174.1| - 8.5e-19 66.7 9.2 1.2e-18 66.3 6.4 1.2 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.15 gi|325967983|ref|YP_004244175.1| - 9.7e-28 96.2 12.7 1.2e-27 96.0 8.8 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF4142 PF13628.1 gi|325967983|ref|YP_004244175.1| - 0.004 17.1 1.3 1.4 8.9 0.6 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4142) G0-G1_switch_2 PF15103.1 gi|325967983|ref|YP_004244175.1| - 0.15 12.2 4.2 0.079 13.2 1.5 1.5 2 0 0 2 2 2 0 G0/G1 switch protein 2 Coiled-coil_56 PF09813.4 gi|325967983|ref|YP_004244175.1| - 0.16 11.9 1.7 0.31 11.0 1.2 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 Glyco_transf_7N PF13733.1 gi|325967983|ref|YP_004244175.1| - 0.19 11.0 1.3 0.26 10.6 0.6 1.5 1 1 1 2 2 2 0 N-terminal region of glycosyl transferase group 7 DUF3373 PF11853.3 gi|325967983|ref|YP_004244175.1| - 0.48 8.9 1.9 0.52 8.7 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF4558 PF15104.1 gi|325967983|ref|YP_004244175.1| - 0.61 10.0 7.8 0.15 12.0 3.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4558) ClpB_D2-small PF10431.4 gi|325967983|ref|YP_004244175.1| - 1.6 8.6 7.9 5.9 6.8 2.5 2.4 1 1 0 2 2 2 0 C-terminal, D2-small domain, of ClpB protein DUF4011 PF13195.1 gi|325967983|ref|YP_004244175.1| - 7.4 6.5 8.2 15 5.5 5.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4011) Ribosomal_S19e PF01090.14 gi|325967984|ref|YP_004244176.1| - 1.2e-51 173.7 0.0 1.5e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|325967984|ref|YP_004244176.1| - 0.00053 19.5 0.0 0.046 13.3 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB C-terminus HTH_45 PF14947.1 gi|325967984|ref|YP_004244176.1| - 0.0017 18.1 0.3 0.0036 17.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DUF1028 PF06267.7 gi|325967985|ref|YP_004244177.1| - 6.1e-64 214.9 0.3 8.3e-64 214.5 0.2 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PG_binding_2 PF08823.6 gi|325967985|ref|YP_004244177.1| - 2.9e-24 84.9 0.1 6.5e-24 83.8 0.0 1.6 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_1 PF01471.13 gi|325967985|ref|YP_004244177.1| - 0.022 14.7 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain DUF2508 PF10704.4 gi|325967985|ref|YP_004244177.1| - 0.037 14.2 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) TFIIS_C PF01096.13 gi|325967986|ref|YP_004244178.1| - 7.7e-21 73.4 9.4 1.7e-19 69.1 3.1 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) UPF0547 PF10571.4 gi|325967986|ref|YP_004244178.1| - 2.6e-07 30.2 5.3 0.14 11.8 0.1 3.3 3 0 0 3 3 3 3 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|325967986|ref|YP_004244178.1| - 5.6e-07 29.2 4.9 0.00021 21.0 1.5 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|325967986|ref|YP_004244178.1| - 6.7e-06 25.6 2.1 0.0079 15.8 0.4 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|325967986|ref|YP_004244178.1| - 2e-05 24.1 5.0 0.039 13.6 0.0 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|325967986|ref|YP_004244178.1| - 4.2e-05 22.5 8.1 0.12 11.5 0.3 3.2 3 0 0 3 3 3 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|325967986|ref|YP_004244178.1| - 0.00012 21.7 2.6 0.37 10.6 0.0 2.7 2 1 0 2 2 2 2 PhnA Zinc-Ribbon Ribosomal_L37e PF01907.14 gi|325967986|ref|YP_004244178.1| - 0.00021 21.0 2.4 0.13 12.0 0.0 3.1 3 0 0 3 3 3 1 Ribosomal protein L37e DUF2387 PF09526.5 gi|325967986|ref|YP_004244178.1| - 0.00024 20.9 1.9 0.29 11.0 0.0 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|325967986|ref|YP_004244178.1| - 0.00028 20.3 4.6 0.93 9.1 0.1 3.3 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.2 gi|325967986|ref|YP_004244178.1| - 0.00054 19.7 3.7 0.027 14.2 0.9 2.3 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|325967986|ref|YP_004244178.1| - 0.00078 19.0 5.5 1.4 8.6 0.1 3.3 3 0 0 3 3 3 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|325967986|ref|YP_004244178.1| - 0.0013 17.9 4.3 0.097 12.0 0.5 2.9 2 1 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|325967986|ref|YP_004244178.1| - 0.0021 17.9 7.5 1.2 9.1 0.0 3.3 3 0 0 3 3 3 1 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|325967986|ref|YP_004244178.1| - 0.0024 17.3 3.5 0.78 9.2 0.3 2.6 2 1 1 3 3 3 2 Transposase zinc-binding domain T4_baseplate PF12322.3 gi|325967986|ref|YP_004244178.1| - 0.0029 16.8 1.5 1.1 8.4 0.1 2.1 1 1 1 2 2 2 2 T4 bacteriophage base plate protein Elf1 PF05129.8 gi|325967986|ref|YP_004244178.1| - 0.0034 17.0 4.8 0.77 9.5 0.0 2.9 1 1 1 2 2 2 1 Transcription elongation factor Elf1 like zf-ISL3 PF14690.1 gi|325967986|ref|YP_004244178.1| - 0.0064 16.4 3.5 2.2 8.3 0.1 2.9 3 0 0 3 3 3 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|325967986|ref|YP_004244178.1| - 0.01 15.2 13.1 0.29 10.6 0.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-tcix PF14952.1 gi|325967986|ref|YP_004244178.1| - 0.013 14.7 9.3 1.3 8.4 0.3 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DUF4379 PF14311.1 gi|325967986|ref|YP_004244178.1| - 0.018 14.8 12.1 0.03 14.1 0.4 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4379) FdhE PF04216.7 gi|325967986|ref|YP_004244178.1| - 0.024 14.3 1.9 0.06 13.0 0.3 1.9 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation Lar_restr_allev PF14354.1 gi|325967986|ref|YP_004244178.1| - 0.026 14.8 7.5 0.066 13.5 1.8 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF2296 PF10058.4 gi|325967986|ref|YP_004244178.1| - 0.027 14.2 4.1 3.7 7.3 0.0 3.1 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Terminase_GpA PF05876.7 gi|325967986|ref|YP_004244178.1| - 0.029 12.7 6.2 0.11 10.7 1.5 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) YhfH PF14149.1 gi|325967986|ref|YP_004244178.1| - 0.035 13.8 5.4 1.7 8.5 0.2 3.3 3 0 0 3 3 3 0 YhfH-like protein DUF2082 PF09855.4 gi|325967986|ref|YP_004244178.1| - 0.043 13.6 6.8 3 7.7 0.1 3.1 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Mu-like_Com PF10122.4 gi|325967986|ref|YP_004244178.1| - 0.06 12.4 1.8 7.5 5.7 0.0 3.0 3 0 0 3 3 3 0 Mu-like prophage protein Com Rubredoxin PF00301.15 gi|325967986|ref|YP_004244178.1| - 0.065 13.1 13.0 1.1 9.1 0.4 3.3 3 0 0 3 3 3 0 Rubredoxin zf-H2C2_2 PF13465.1 gi|325967986|ref|YP_004244178.1| - 0.1 12.9 9.4 5.6 7.4 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger double domain IBR PF01485.16 gi|325967986|ref|YP_004244178.1| - 0.12 12.3 4.7 12 5.8 1.3 2.9 2 1 0 2 2 2 0 IBR domain HypA PF01155.14 gi|325967986|ref|YP_004244178.1| - 0.13 11.9 4.2 0.12 12.0 0.6 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF1610 PF07754.6 gi|325967986|ref|YP_004244178.1| - 0.19 11.8 13.0 0.99 9.5 0.4 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) DUF3797 PF12677.2 gi|325967986|ref|YP_004244178.1| - 0.21 11.2 4.8 5.6 6.6 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) Baculo_LEF5_C PF11792.3 gi|325967986|ref|YP_004244178.1| - 0.21 10.9 2.7 0.81 9.1 0.0 2.6 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain A2L_zn_ribbon PF08792.5 gi|325967986|ref|YP_004244178.1| - 0.39 10.2 6.9 3.8 7.0 0.2 3.0 3 0 0 3 3 3 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|325967986|ref|YP_004244178.1| - 0.39 10.4 4.2 39 4.0 0.1 3.1 3 0 0 3 3 3 0 Nudix N-terminal PolC_DP2 PF03833.8 gi|325967986|ref|YP_004244178.1| - 0.42 8.2 1.8 0.36 8.4 0.2 1.6 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Cys_rich_CPCC PF14206.1 gi|325967986|ref|YP_004244178.1| - 0.42 10.1 3.3 22 4.6 0.0 3.0 3 0 0 3 3 3 0 Cysteine-rich CPCC Ribosomal_S27e PF01667.12 gi|325967986|ref|YP_004244178.1| - 0.44 10.1 3.7 16 5.1 0.0 3.0 2 1 0 2 2 2 0 Ribosomal protein S27 zf-ZPR1 PF03367.8 gi|325967986|ref|YP_004244178.1| - 0.51 9.4 3.9 6.2 5.9 0.0 2.8 2 1 0 2 2 2 0 ZPR1 zinc-finger domain zf-Mss51 PF13824.1 gi|325967986|ref|YP_004244178.1| - 0.51 10.2 6.8 23 4.9 0.0 3.0 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_4 PF13894.1 gi|325967986|ref|YP_004244178.1| - 0.52 10.7 3.9 8.3 7.0 0.0 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger zf-HIT PF04438.11 gi|325967986|ref|YP_004244178.1| - 0.53 9.9 10.3 11 5.7 0.1 3.1 3 0 0 3 3 3 0 HIT zinc finger DUF2072 PF09845.4 gi|325967986|ref|YP_004244178.1| - 0.56 10.1 6.2 2 8.3 0.1 2.7 1 1 2 3 3 3 0 Zn-ribbon containing protein (DUF2072) zf-NADH-PPase PF09297.6 gi|325967986|ref|YP_004244178.1| - 0.61 9.6 7.7 17 4.9 0.1 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain GFA PF04828.9 gi|325967986|ref|YP_004244178.1| - 0.69 9.9 3.5 1.2 9.1 0.2 2.4 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Opy2 PF09463.5 gi|325967986|ref|YP_004244178.1| - 0.7 10.0 4.3 8.6 6.5 0.0 2.7 3 0 0 3 3 2 0 Opy2 protein zf-TFIIB PF13453.1 gi|325967986|ref|YP_004244178.1| - 1.3 8.3 8.2 6 6.1 0.0 3.0 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-RanBP PF00641.13 gi|325967986|ref|YP_004244178.1| - 1.3 8.2 11.1 0.41 9.7 0.4 3.0 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others ADK_lid PF05191.9 gi|325967986|ref|YP_004244178.1| - 1.8 8.3 7.3 4.3 7.0 0.1 3.3 4 0 0 4 4 3 0 Adenylate kinase, active site lid Desulfoferrod_N PF06397.7 gi|325967986|ref|YP_004244178.1| - 2 7.8 7.5 4.9 6.6 0.1 2.6 3 0 0 3 3 2 0 Desulfoferrodoxin, N-terminal domain DUF983 PF06170.7 gi|325967986|ref|YP_004244178.1| - 2.2 8.4 4.3 7.3 6.7 0.1 3.2 3 1 1 4 4 4 0 Protein of unknown function (DUF983) zf-C2H2_3 PF13878.1 gi|325967986|ref|YP_004244178.1| - 2.3 7.8 5.1 17 5.0 0.1 3.0 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO DUF1936 PF09151.5 gi|325967986|ref|YP_004244178.1| - 3.4 7.2 8.6 7.5 6.1 0.3 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Meleagrin PF08189.6 gi|325967986|ref|YP_004244178.1| - 4.8 6.7 9.3 1.4 8.4 0.4 2.7 3 0 0 3 3 2 0 Meleagrin/Cygnin family zf-C2H2 PF00096.21 gi|325967986|ref|YP_004244178.1| - 6.7 7.2 9.5 29 5.2 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-C4_Topoisom PF01396.14 gi|325967986|ref|YP_004244178.1| - 6.8 6.2 12.5 4.3 6.9 0.8 2.9 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger FeS PF04060.8 gi|325967986|ref|YP_004244178.1| - 8.3 6.0 9.3 22 4.7 0.1 3.3 3 0 0 3 3 3 0 Putative Fe-S cluster PCNA_N PF00705.13 gi|325967987|ref|YP_004244179.1| - 3.4e-13 49.2 0.1 2e-11 43.4 0.0 2.3 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|325967987|ref|YP_004244179.1| - 3e-10 40.0 0.7 8.8e-09 35.3 0.2 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|325967987|ref|YP_004244179.1| - 1.5e-06 27.1 0.0 0.0027 16.5 0.0 2.2 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|325967987|ref|YP_004244179.1| - 0.00077 18.6 0.0 0.0015 17.7 0.0 1.5 1 1 0 1 1 1 1 Rad9 DNA_primase_S PF01896.14 gi|325967988|ref|YP_004244180.1| - 3.8e-25 88.3 0.0 6.6e-25 87.6 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Ribosomal_L44 PF00935.14 gi|325967990|ref|YP_004244182.1| - 3.3e-27 94.2 4.8 4.6e-27 93.8 3.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 Ribosomal_S27e PF01667.12 gi|325967990|ref|YP_004244182.1| - 0.006 16.1 0.7 0.29 10.7 0.1 2.2 2 0 0 2 2 2 1 Ribosomal protein S27 zf-ISL3 PF14690.1 gi|325967990|ref|YP_004244182.1| - 0.016 15.2 1.5 0.26 11.3 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|325967990|ref|YP_004244182.1| - 0.016 14.9 1.4 0.13 11.9 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Yippee-Mis18 PF03226.9 gi|325967990|ref|YP_004244182.1| - 0.053 13.5 0.0 0.073 13.1 0.0 1.2 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_5 PF13719.1 gi|325967990|ref|YP_004244182.1| - 0.056 13.0 2.0 1.9 8.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|325967990|ref|YP_004244182.1| - 0.062 13.0 2.3 2.1 8.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.8 gi|325967990|ref|YP_004244182.1| - 0.067 12.8 0.6 5.7 6.7 0.2 2.3 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|325967990|ref|YP_004244182.1| - 0.081 12.1 0.8 5.3 6.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|325967990|ref|YP_004244182.1| - 0.11 12.8 0.5 2.4 8.5 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar RecR PF02132.10 gi|325967990|ref|YP_004244182.1| - 0.12 11.8 1.9 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 RecR protein Rubredoxin PF00301.15 gi|325967990|ref|YP_004244182.1| - 0.13 12.1 1.2 5.7 6.9 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Mu-like_Com PF10122.4 gi|325967990|ref|YP_004244182.1| - 0.37 9.8 2.4 12 5.0 0.2 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com Rpr2 PF04032.11 gi|325967990|ref|YP_004244182.1| - 0.42 10.5 3.3 0.97 9.3 2.3 1.6 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.2 gi|325967990|ref|YP_004244182.1| - 0.83 9.5 3.2 8 6.3 2.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L33 PF00471.15 gi|325967990|ref|YP_004244182.1| - 1.5 9.1 6.4 5.3 7.3 0.1 2.9 2 2 1 3 3 3 0 Ribosomal protein L33 Zn_Tnp_IS1 PF03811.8 gi|325967990|ref|YP_004244182.1| - 3.7 7.1 5.9 0.62 9.6 0.6 2.2 2 1 0 2 2 2 0 InsA N-terminal domain Ribosomal_S27e PF01667.12 gi|325967991|ref|YP_004244183.1| - 2.2e-21 75.1 0.5 2.7e-21 74.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|325967991|ref|YP_004244183.1| - 9.7e-05 21.6 0.6 0.00012 21.2 0.4 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|325967991|ref|YP_004244183.1| - 0.00063 18.8 0.9 0.18 11.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|325967991|ref|YP_004244183.1| - 0.0021 17.3 2.5 0.98 8.8 0.1 2.3 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain RNA_POL_M_15KD PF02150.11 gi|325967991|ref|YP_004244183.1| - 0.023 14.3 1.0 0.53 10.0 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-BED PF02892.10 gi|325967991|ref|YP_004244183.1| - 0.051 13.3 0.2 9.1 6.1 0.0 2.1 2 0 0 2 2 2 0 BED zinc finger HypA PF01155.14 gi|325967991|ref|YP_004244183.1| - 0.068 12.8 0.1 0.075 12.7 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|325967991|ref|YP_004244183.1| - 0.11 12.1 4.2 2 8.1 0.4 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|325967991|ref|YP_004244183.1| - 0.12 11.9 4.5 1.6 8.4 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|325967991|ref|YP_004244183.1| - 0.13 11.3 2.2 4.4 6.4 0.2 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others TFIIS_C PF01096.13 gi|325967991|ref|YP_004244183.1| - 0.28 10.8 2.8 2.2 7.9 0.2 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|325967991|ref|YP_004244183.1| - 0.59 9.6 5.5 2.3 7.7 0.7 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF3797 PF12677.2 gi|325967991|ref|YP_004244183.1| - 0.76 9.4 8.2 1.1 8.9 1.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.1 gi|325967991|ref|YP_004244183.1| - 1.6 8.3 4.7 18 4.9 3.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|325967992|ref|YP_004244184.1| - 4.1e-26 90.9 0.0 8e-26 90.0 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|325967992|ref|YP_004244184.1| - 6.9e-08 32.4 1.1 7.8e-07 29.1 0.0 2.5 3 0 0 3 3 3 1 S1 RNA binding domain Nop10p PF04135.7 gi|325967993|ref|YP_004244185.1| - 1.2e-23 82.5 1.4 1.4e-23 82.3 0.9 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.3 gi|325967993|ref|YP_004244185.1| - 0.002 17.9 1.1 0.0036 17.1 0.8 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|325967993|ref|YP_004244185.1| - 0.02 14.0 4.7 0.065 12.4 3.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|325967993|ref|YP_004244185.1| - 0.026 14.3 0.5 0.038 13.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.6 gi|325967993|ref|YP_004244185.1| - 0.036 13.9 1.6 0.049 13.4 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) NRDD PF13597.1 gi|325967993|ref|YP_004244185.1| - 0.098 10.7 0.4 0.11 10.4 0.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase RecR PF02132.10 gi|325967993|ref|YP_004244185.1| - 0.099 12.1 0.7 0.16 11.4 0.5 1.3 1 0 0 1 1 1 0 RecR protein zf-C3HC4_3 PF13920.1 gi|325967993|ref|YP_004244185.1| - 0.11 12.2 1.4 0.15 11.7 1.0 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) A2L_zn_ribbon PF08792.5 gi|325967993|ref|YP_004244185.1| - 0.18 11.3 1.6 4.4 6.8 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-FCS PF06467.9 gi|325967993|ref|YP_004244185.1| - 0.21 11.2 2.8 3.6 7.3 0.1 2.2 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif Ribosomal_L37e PF01907.14 gi|325967993|ref|YP_004244185.1| - 0.44 10.3 3.7 0.7 9.7 2.6 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.1 gi|325967993|ref|YP_004244185.1| - 0.62 9.6 6.3 2.1 7.9 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|325967993|ref|YP_004244185.1| - 0.81 9.7 7.0 2.8 8.0 0.6 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|325967993|ref|YP_004244185.1| - 1.4 8.9 5.7 0.75 9.8 0.3 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|325967993|ref|YP_004244185.1| - 2 7.8 5.4 5.6 6.3 0.5 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding STT3 PF02516.9 gi|325967994|ref|YP_004244186.1| - 1.9e-21 76.6 54.5 3.5e-21 75.7 37.7 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Aldose_epim PF01263.15 gi|325967995|ref|YP_004244187.1| - 4.4e-37 127.8 0.0 5.7e-37 127.4 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase DUF4049 PF13258.1 gi|325967995|ref|YP_004244187.1| - 0.098 11.6 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4049) PaREP1 PF05942.6 gi|325967996|ref|YP_004244188.1| - 9.1e-08 31.9 1.5 1.5e-07 31.3 1.0 1.4 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|325967996|ref|YP_004244188.1| - 0.0055 16.5 0.6 0.0083 16.0 0.4 1.3 1 1 0 1 1 1 1 HEPN domain Erp_C PF06780.6 gi|325967996|ref|YP_004244188.1| - 0.032 14.0 1.1 0.044 13.6 0.7 1.5 1 1 0 1 1 1 0 Erp protein C-terminus MARVEL PF01284.18 gi|325967997|ref|YP_004244189.1| - 0.32 10.8 9.0 0.47 10.2 6.2 1.2 1 0 0 1 1 1 0 Membrane-associating domain Phage_holin_1 PF04531.8 gi|325967997|ref|YP_004244189.1| - 7.3 6.7 11.1 1.1 9.3 2.2 2.2 2 0 0 2 2 2 0 Bacteriophage holin TauE PF01925.14 gi|325967998|ref|YP_004244190.1| - 4.5e-32 111.4 35.8 5.9e-32 111.0 24.8 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE zf-DHHC PF01529.15 gi|325967998|ref|YP_004244190.1| - 0.2 11.0 1.2 0.95 8.8 0.9 2.3 1 1 0 1 1 1 0 DHHC palmitoyltransferase CW_binding_1 PF01473.15 gi|325967999|ref|YP_004244191.1| - 1.7 8.8 6.0 1.7 8.8 1.7 2.8 2 0 0 2 2 2 0 Putative cell wall binding repeat DUF1634 PF07843.6 gi|325968000|ref|YP_004244192.1| - 0.0078 15.8 10.5 0.011 15.3 7.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) Pox_VLTF3 PF04947.9 gi|325968000|ref|YP_004244192.1| - 0.08 12.4 0.1 0.098 12.1 0.1 1.2 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like NfeD PF01957.13 gi|325968000|ref|YP_004244192.1| - 0.36 10.9 12.5 2 8.5 5.5 2.1 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Picorna_P3A PF06363.6 gi|325968000|ref|YP_004244192.1| - 1.8 8.6 3.7 0.73 9.8 0.1 2.0 2 1 1 3 3 3 0 Picornaviridae P3A protein DUF1435 PF07256.7 gi|325968000|ref|YP_004244192.1| - 2.2 8.3 9.2 0.7 9.9 4.2 1.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1435) DUF1212 PF06738.7 gi|325968000|ref|YP_004244192.1| - 2.8 7.3 11.2 0.94 8.9 4.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) Spore_YabQ PF09578.5 gi|325968000|ref|YP_004244192.1| - 5.4 7.0 14.5 12 5.9 5.6 2.8 2 1 0 2 2 2 0 Spore cortex protein YabQ (Spore_YabQ) DUF2964 PF11177.3 gi|325968000|ref|YP_004244192.1| - 6.9 6.6 12.5 0.77 9.7 0.2 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2964) MotA_ExbB PF01618.11 gi|325968000|ref|YP_004244192.1| - 7 6.2 11.7 0.9 9.1 4.1 2.0 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family DUF2518 PF10726.4 gi|325968000|ref|YP_004244192.1| - 7.2 6.1 8.7 1.9 7.9 2.1 2.1 2 0 0 2 2 2 0 Protein of function (DUF2518) TauE PF01925.14 gi|325968001|ref|YP_004244193.1| - 2.4e-36 125.4 37.2 2.9e-36 125.1 25.8 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TauE PF01925.14 gi|325968002|ref|YP_004244194.1| - 4.2e-38 131.1 28.6 4.2e-38 131.1 19.8 1.8 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE TauE PF01925.14 gi|325968003|ref|YP_004244195.1| - 1.9e-37 129.0 33.5 1.9e-37 129.0 23.2 2.3 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.6 gi|325968003|ref|YP_004244195.1| - 3.3e-22 78.0 15.0 3.3e-22 78.0 10.4 3.7 4 1 0 4 4 4 1 Protein of unknown function (DUF1634) Peptidase_M50 PF02163.17 gi|325968003|ref|YP_004244195.1| - 0.0022 16.9 0.1 0.062 12.2 0.0 2.9 1 1 0 1 1 1 1 Peptidase family M50 E1-E2_ATPase PF00122.15 gi|325968004|ref|YP_004244196.1| - 4.2e-60 202.6 6.3 4.2e-60 202.6 4.4 2.7 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|325968004|ref|YP_004244196.1| - 4.1e-27 96.0 0.1 6.6e-27 95.3 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|325968004|ref|YP_004244196.1| - 3.4e-14 53.4 0.0 6.9e-14 52.4 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|325968004|ref|YP_004244196.1| - 1.8e-07 31.0 0.0 2.9e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase TrmB PF01978.14 gi|325968007|ref|YP_004244199.1| - 0.0039 16.8 0.3 1.1 8.9 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Phage_X PF05155.10 gi|325968007|ref|YP_004244199.1| - 0.056 13.3 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 Phage X family GATase_3 PF07685.9 gi|325968008|ref|YP_004244200.1| - 1.8e-26 92.6 0.1 2.6e-26 92.0 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|325968008|ref|YP_004244200.1| - 2e-18 66.5 0.4 3.9e-18 65.5 0.3 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|325968008|ref|YP_004244200.1| - 6.4e-11 42.2 2.1 2.4e-08 33.8 0.1 2.4 1 1 1 2 2 2 2 AAA domain VirC1 PF07015.6 gi|325968008|ref|YP_004244200.1| - 0.0052 15.8 0.0 0.0091 15.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein TP_methylase PF00590.15 gi|325968009|ref|YP_004244201.1| - 2.9e-36 125.1 0.0 3.4e-36 124.9 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RNA_pol_Rpb5_C PF01191.14 gi|325968009|ref|YP_004244201.1| - 0.077 12.5 0.1 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain TrmB PF01978.14 gi|325968010|ref|YP_004244202.1| - 0.019 14.6 0.2 0.038 13.6 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF387 PF04079.11 gi|325968010|ref|YP_004244202.1| - 0.04 13.2 0.0 0.075 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) PUB PF09409.5 gi|325968011|ref|YP_004244203.1| - 0.083 12.6 0.6 0.19 11.5 0.3 1.7 1 1 1 2 2 2 0 PUB domain ATP-sulfurylase PF01747.12 gi|325968013|ref|YP_004244205.1| - 3.2e-79 265.2 0.0 4.2e-79 264.8 0.0 1.1 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.1 gi|325968013|ref|YP_004244205.1| - 7.9e-40 135.8 0.0 1.2e-39 135.3 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain FAD_binding_2 PF00890.19 gi|325968014|ref|YP_004244206.1| - 1.8e-14 53.4 0.2 3.2e-13 49.3 0.0 2.5 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|325968014|ref|YP_004244206.1| - 8e-09 35.4 0.0 1.8e-08 34.2 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|325968014|ref|YP_004244206.1| - 2e-05 23.7 2.0 0.00018 20.5 0.2 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|325968014|ref|YP_004244206.1| - 0.0027 17.6 0.7 0.02 14.9 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|325968014|ref|YP_004244206.1| - 0.015 14.1 0.7 0.12 11.2 0.3 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|325968014|ref|YP_004244206.1| - 0.02 14.8 0.5 0.089 12.6 0.1 2.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|325968014|ref|YP_004244206.1| - 0.024 13.7 0.1 0.04 13.0 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|325968014|ref|YP_004244206.1| - 0.45 8.9 0.8 0.62 8.4 0.2 1.4 2 0 0 2 2 2 0 HI0933-like protein APS-reductase_C PF12139.3 gi|325968015|ref|YP_004244207.1| - 2e-27 95.1 0.0 2.7e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_7 PF12838.2 gi|325968015|ref|YP_004244207.1| - 8.1e-12 45.3 11.0 1.5e-11 44.4 7.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968015|ref|YP_004244207.1| - 1.2e-11 43.7 13.2 1.7e-06 27.3 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|325968015|ref|YP_004244207.1| - 3.5e-11 43.1 10.9 6.4e-11 42.3 7.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968015|ref|YP_004244207.1| - 4.7e-09 35.8 9.9 8.7e-09 35.0 6.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325968015|ref|YP_004244207.1| - 1.8e-08 34.2 10.0 3.5e-08 33.3 6.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325968015|ref|YP_004244207.1| - 2.2e-08 33.5 13.4 3.4e-06 26.6 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|325968015|ref|YP_004244207.1| - 2.4e-07 31.3 4.0 0.0047 17.6 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|325968015|ref|YP_004244207.1| - 1.1e-06 28.2 13.8 0.00048 19.8 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|325968015|ref|YP_004244207.1| - 1.3e-05 25.1 14.2 0.00022 21.2 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|325968015|ref|YP_004244207.1| - 1.6e-05 25.0 18.6 0.012 16.1 4.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|325968015|ref|YP_004244207.1| - 2.5e-05 24.6 10.4 0.0045 17.3 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968015|ref|YP_004244207.1| - 4.4e-05 23.7 13.0 0.00077 19.7 9.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|325968015|ref|YP_004244207.1| - 0.0005 19.8 13.7 0.045 13.6 3.2 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|325968015|ref|YP_004244207.1| - 0.028 14.7 9.0 0.12 12.8 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|325968015|ref|YP_004244207.1| - 0.11 13.0 10.2 4.2 8.0 7.1 2.2 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|325968015|ref|YP_004244207.1| - 0.15 11.9 7.0 2.5 8.0 0.7 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Nitrate_red_gam PF02665.9 gi|325968016|ref|YP_004244208.1| - 0.027 13.8 13.7 0.037 13.3 2.1 2.7 1 1 1 2 2 2 0 Nitrate reductase gamma subunit Fer4_8 PF13183.1 gi|325968018|ref|YP_004244210.1| - 2.2e-11 43.5 1.6 4.8e-11 42.5 1.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|325968018|ref|YP_004244210.1| - 3.2e-11 43.0 0.6 8.1e-10 38.5 0.0 2.8 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_17 PF13534.1 gi|325968018|ref|YP_004244210.1| - 1e-10 41.7 8.7 2.4e-08 34.1 0.9 2.4 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968018|ref|YP_004244210.1| - 1.2e-08 35.1 15.3 1.7e-06 28.2 3.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968018|ref|YP_004244210.1| - 1.4e-07 31.8 4.1 9.3e-05 22.7 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968018|ref|YP_004244210.1| - 4.4e-07 30.0 6.2 0.00024 21.2 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968018|ref|YP_004244210.1| - 3.5e-06 26.7 4.9 1.7e-05 24.5 3.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325968018|ref|YP_004244210.1| - 0.00018 21.5 10.4 0.0025 17.9 1.7 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968018|ref|YP_004244210.1| - 0.0016 18.2 5.7 0.037 13.8 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968018|ref|YP_004244210.1| - 0.0022 17.5 3.7 0.0022 17.5 2.6 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|325968018|ref|YP_004244210.1| - 0.0051 16.6 11.4 0.0074 16.1 2.5 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325968018|ref|YP_004244210.1| - 0.0085 15.9 3.0 0.0085 15.9 2.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|325968018|ref|YP_004244210.1| - 0.023 15.4 13.5 0.067 13.9 5.1 3.2 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|325968018|ref|YP_004244210.1| - 0.042 14.4 5.1 0.042 14.4 3.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|325968018|ref|YP_004244210.1| - 0.47 11.0 3.4 1.4 9.5 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Nitrate_red_gam PF02665.9 gi|325968019|ref|YP_004244211.1| - 1.4e-27 96.4 17.2 1.7e-26 92.9 11.9 2.1 1 1 0 1 1 1 1 Nitrate reductase gamma subunit T_hemolysin PF12261.3 gi|325968020|ref|YP_004244212.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Thermostable hemolysin DrsE_2 PF13686.1 gi|325968021|ref|YP_004244213.1| - 7.8e-10 38.7 1.3 1.7e-09 37.6 0.4 1.6 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|325968021|ref|YP_004244213.1| - 3.7e-08 33.4 0.1 4.3e-08 33.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family NIR_SIR PF01077.17 gi|325968022|ref|YP_004244214.1| - 3.4e-21 75.2 0.0 4.7e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|325968022|ref|YP_004244214.1| - 0.00012 21.6 0.0 0.00022 20.8 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.2 gi|325968022|ref|YP_004244214.1| - 0.0081 16.5 0.6 0.025 14.9 0.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain NIR_SIR PF01077.17 gi|325968023|ref|YP_004244215.1| - 1.9e-30 105.3 0.0 2.8e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|325968023|ref|YP_004244215.1| - 6.4e-08 32.1 0.0 1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_15 PF13459.1 gi|325968023|ref|YP_004244215.1| - 4.3e-07 30.4 3.3 0.00074 20.0 0.1 3.1 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_7 PF12838.2 gi|325968023|ref|YP_004244215.1| - 8.1e-06 26.1 1.9 8.1e-06 26.1 1.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968023|ref|YP_004244215.1| - 4.2e-05 22.9 11.6 0.0011 18.4 3.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|325968023|ref|YP_004244215.1| - 0.00068 19.9 9.5 0.008 16.5 0.4 2.6 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|325968023|ref|YP_004244215.1| - 0.0014 18.4 2.1 0.0014 18.4 1.5 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325968023|ref|YP_004244215.1| - 0.0015 18.2 5.7 0.0016 18.2 2.0 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325968023|ref|YP_004244215.1| - 0.0032 17.4 5.2 0.011 15.7 0.7 3.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968023|ref|YP_004244215.1| - 0.0084 16.3 6.2 0.17 12.1 4.1 2.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325968023|ref|YP_004244215.1| - 0.014 15.2 5.4 0.014 15.2 3.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968023|ref|YP_004244215.1| - 0.023 14.5 1.5 0.023 14.5 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968023|ref|YP_004244215.1| - 3.5 8.1 7.4 0.58 10.6 1.9 2.1 2 0 0 2 2 1 0 4Fe-4S dicluster domain DsrC PF04358.8 gi|325968025|ref|YP_004244217.1| - 2.3e-37 127.5 0.0 2.6e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein HEPN PF05168.9 gi|325968026|ref|YP_004244218.1| - 6.7e-23 80.8 0.0 8e-23 80.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF4398 PF14346.1 gi|325968026|ref|YP_004244218.1| - 0.0039 17.2 0.3 0.11 12.5 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4398) TPR_2 PF07719.12 gi|325968026|ref|YP_004244218.1| - 0.83 9.7 3.1 21 5.3 0.0 3.3 2 1 1 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|325968027|ref|YP_004244219.1| - 2.7e-09 37.2 0.1 5.6e-09 36.2 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|325968027|ref|YP_004244219.1| - 0.0036 16.9 0.0 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 Ku_N PF03731.10 gi|325968027|ref|YP_004244219.1| - 0.099 12.0 0.0 0.14 11.6 0.0 1.1 1 0 0 1 1 1 0 Ku70/Ku80 N-terminal alpha/beta domain Sigma54_CBD PF04963.8 gi|325968028|ref|YP_004244220.1| - 0.018 14.5 0.0 0.02 14.3 0.0 1.0 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain HTH_27 PF13463.1 gi|325968028|ref|YP_004244220.1| - 0.049 13.9 0.0 0.06 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF505 PF04458.7 gi|325968028|ref|YP_004244220.1| - 0.096 10.7 0.0 0.096 10.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HemN_C PF06969.11 gi|325968028|ref|YP_004244220.1| - 0.099 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain Aldo_ket_red PF00248.16 gi|325968029|ref|YP_004244221.1| - 8.8e-63 211.7 0.0 1e-62 211.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family CTP_transf_2 PF01467.21 gi|325968029|ref|YP_004244221.1| - 0.033 14.2 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase DUF1664 PF07889.7 gi|325968031|ref|YP_004244223.1| - 0.0048 16.7 0.4 0.0052 16.5 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Sec5 PF15469.1 gi|325968031|ref|YP_004244223.1| - 0.015 15.0 0.7 0.017 14.8 0.5 1.0 1 0 0 1 1 1 0 Exocyst complex component Sec5 DUF3510 PF12022.3 gi|325968031|ref|YP_004244223.1| - 0.015 15.3 0.4 0.016 15.2 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3510) HSBP1 PF06825.7 gi|325968031|ref|YP_004244223.1| - 0.041 13.4 0.3 0.049 13.1 0.2 1.1 1 0 0 1 1 1 0 Heat shock factor binding protein 1 ADPrib_exo_Tox PF03496.9 gi|325968031|ref|YP_004244223.1| - 0.044 12.9 1.6 0.048 12.8 1.1 1.0 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme DUF4473 PF14747.1 gi|325968031|ref|YP_004244223.1| - 0.045 13.9 0.6 0.046 13.9 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) Methyltransf_14 PF08484.6 gi|325968031|ref|YP_004244223.1| - 0.056 12.9 0.5 0.053 13.0 0.3 1.0 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain ATP-synt_E_2 PF08112.6 gi|325968031|ref|YP_004244223.1| - 0.061 13.3 4.3 0.075 13.1 3.0 1.2 1 0 0 1 1 1 0 ATP synthase epsilon subunit DUF2746 PF10874.3 gi|325968031|ref|YP_004244223.1| - 0.13 12.4 0.6 0.16 12.1 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2746) LUC7 PF03194.10 gi|325968031|ref|YP_004244223.1| - 0.13 11.7 1.9 0.14 11.7 1.3 1.0 1 0 0 1 1 1 0 LUC7 N_terminus Prefoldin PF02996.12 gi|325968031|ref|YP_004244223.1| - 0.2 11.3 5.1 0.22 11.2 3.5 1.0 1 0 0 1 1 1 0 Prefoldin subunit YtxH PF12732.2 gi|325968031|ref|YP_004244223.1| - 0.21 11.9 1.4 0.29 11.5 1.0 1.2 1 0 0 1 1 1 0 YtxH-like protein Phe_tRNA-synt_N PF02912.13 gi|325968031|ref|YP_004244223.1| - 0.4 10.4 3.7 0.46 10.2 2.6 1.2 1 0 0 1 1 1 0 Aminoacyl tRNA synthetase class II, N-terminal domain DUF349 PF03993.7 gi|325968031|ref|YP_004244223.1| - 0.82 9.8 4.0 0.93 9.6 2.8 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) EF-1_beta_acid PF10587.4 gi|325968031|ref|YP_004244223.1| - 1.1 9.4 3.2 2.5 8.3 0.5 2.0 2 0 0 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region vATP-synt_AC39 PF01992.11 gi|325968032|ref|YP_004244224.1| - 4e-19 68.9 0.5 5.2e-19 68.5 0.3 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Apolipoprotein PF01442.13 gi|325968033|ref|YP_004244225.1| - 0.0012 18.4 2.6 0.0016 17.9 1.8 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain Mitofilin PF09731.4 gi|325968033|ref|YP_004244225.1| - 0.0021 16.7 6.3 0.0023 16.6 4.4 1.1 1 0 0 1 1 1 1 Mitochondrial inner membrane protein OmpH PF03938.9 gi|325968033|ref|YP_004244225.1| - 0.0033 17.3 2.3 0.0096 15.8 1.6 1.7 1 1 0 1 1 1 1 Outer membrane protein (OmpH-like) DUF1104 PF06518.6 gi|325968033|ref|YP_004244225.1| - 0.0045 17.0 4.5 0.0045 17.0 3.1 1.5 2 0 0 2 2 1 1 Protein of unknown function (DUF1104) Leuk-A4-hydro_C PF09127.6 gi|325968033|ref|YP_004244225.1| - 0.0091 15.6 0.7 0.016 14.8 0.2 1.6 1 1 1 2 2 2 1 Leukotriene A4 hydrolase, C-terminal DUF445 PF04286.7 gi|325968033|ref|YP_004244225.1| - 0.01 15.4 6.1 2.9 7.3 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF445) ARGLU PF15346.1 gi|325968033|ref|YP_004244225.1| - 0.016 14.9 13.0 0.02 14.6 9.0 1.1 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 ApoLp-III PF07464.6 gi|325968033|ref|YP_004244225.1| - 0.016 15.2 4.1 0.025 14.6 2.9 1.3 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) DUF4071 PF13281.1 gi|325968033|ref|YP_004244225.1| - 0.019 13.8 2.1 0.021 13.6 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4071) V-ATPase_G PF03179.10 gi|325968033|ref|YP_004244225.1| - 0.02 15.1 7.3 0.025 14.8 4.9 1.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit Swi5 PF07061.6 gi|325968033|ref|YP_004244225.1| - 0.025 14.3 3.9 0.33 10.7 0.4 2.1 1 1 1 2 2 2 0 Swi5 DegS PF05384.6 gi|325968033|ref|YP_004244225.1| - 0.035 13.3 12.4 0.17 11.0 4.9 2.0 1 1 1 2 2 2 0 Sensor protein DegS DUF4239 PF14023.1 gi|325968033|ref|YP_004244225.1| - 0.039 13.3 1.8 0.047 13.0 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) DUF3708 PF12501.3 gi|325968033|ref|YP_004244225.1| - 0.04 13.7 0.2 0.086 12.6 0.1 1.5 1 1 1 2 2 2 0 Phosphate ATP-binding cassette transporter DUF2884 PF11101.3 gi|325968033|ref|YP_004244225.1| - 0.041 13.2 1.0 0.062 12.6 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Phasin PF05597.6 gi|325968033|ref|YP_004244225.1| - 0.045 13.5 7.8 0.11 12.3 2.5 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) GldM_N PF12081.3 gi|325968033|ref|YP_004244225.1| - 0.047 13.2 1.9 0.059 12.8 1.3 1.2 1 0 0 1 1 1 0 GldM N-terminal domain LMBR1 PF04791.11 gi|325968033|ref|YP_004244225.1| - 0.051 12.1 2.1 0.053 12.1 1.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF387 PF04079.11 gi|325968033|ref|YP_004244225.1| - 0.06 12.7 2.4 0.07 12.4 1.3 1.4 1 1 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) Z1 PF10593.4 gi|325968033|ref|YP_004244225.1| - 0.071 12.3 1.6 0.074 12.2 1.1 1.2 1 0 0 1 1 1 0 Z1 domain Lipoprotein_7 PF01540.11 gi|325968033|ref|YP_004244225.1| - 0.074 12.1 5.5 0.091 11.8 3.8 1.1 1 0 0 1 1 1 0 Adhesin lipoprotein RHD3 PF05879.7 gi|325968033|ref|YP_004244225.1| - 0.075 10.9 5.0 0.089 10.7 3.5 1.0 1 0 0 1 1 1 0 Root hair defective 3 GTP-binding protein (RHD3) ISG65-75 PF11727.3 gi|325968033|ref|YP_004244225.1| - 0.085 11.8 7.1 0.17 10.8 4.9 1.5 1 1 0 1 1 1 0 Invariant surface glycoprotein DUF3510 PF12022.3 gi|325968033|ref|YP_004244225.1| - 0.087 12.9 2.8 0.11 12.6 0.8 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF3510) YwqJ-deaminase PF14431.1 gi|325968033|ref|YP_004244225.1| - 0.1 12.4 0.2 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 YwqJ-like deaminase Prominin PF05478.6 gi|325968033|ref|YP_004244225.1| - 0.12 9.8 3.8 0.22 9.0 2.7 1.3 1 1 0 1 1 1 0 Prominin DUF4403 PF14356.1 gi|325968033|ref|YP_004244225.1| - 0.13 10.5 1.5 0.48 8.6 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4403) Phage_min_cap2 PF06152.6 gi|325968033|ref|YP_004244225.1| - 0.13 11.2 3.0 0.16 10.9 2.1 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 CBFD_NFYB_HMF PF00808.18 gi|325968033|ref|YP_004244225.1| - 0.15 12.1 1.4 0.46 10.5 0.2 2.0 1 1 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone IMD PF08397.6 gi|325968033|ref|YP_004244225.1| - 0.16 11.2 4.6 0.19 11.0 2.8 1.3 1 1 0 1 1 1 0 IRSp53/MIM homology domain YgaB PF14182.1 gi|325968033|ref|YP_004244225.1| - 0.16 12.2 3.4 0.24 11.6 2.0 1.6 1 1 0 1 1 1 0 YgaB-like protein AAA_32 PF13654.1 gi|325968033|ref|YP_004244225.1| - 0.18 10.4 6.2 0.45 9.1 2.3 1.9 1 1 1 2 2 2 0 AAA domain DUF148 PF02520.12 gi|325968033|ref|YP_004244225.1| - 0.18 11.6 3.7 1.6 8.5 2.2 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF148 DUF2115 PF09888.4 gi|325968033|ref|YP_004244225.1| - 0.18 11.8 2.1 0.22 11.6 1.5 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) V-SNARE PF05008.10 gi|325968033|ref|YP_004244225.1| - 0.21 11.7 7.0 0.37 10.9 0.8 2.2 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Col_cuticle_N PF01484.12 gi|325968033|ref|YP_004244225.1| - 0.22 11.2 0.5 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Nematode cuticle collagen N-terminal domain Fib_alpha PF08702.5 gi|325968033|ref|YP_004244225.1| - 0.24 11.4 5.4 0.46 10.5 3.7 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family ECM11 PF15463.1 gi|325968033|ref|YP_004244225.1| - 0.25 11.6 3.5 0.41 10.9 2.4 1.7 1 1 0 1 1 1 0 Extracellular mutant protein 11 Phe_tRNA-synt_N PF02912.13 gi|325968033|ref|YP_004244225.1| - 0.31 10.8 2.1 2.1 8.1 0.1 2.4 1 1 2 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain DMPK_coil PF08826.5 gi|325968033|ref|YP_004244225.1| - 0.34 10.8 4.0 0.92 9.4 2.5 2.1 1 1 1 2 2 2 0 DMPK coiled coil domain like DUF4404 PF14357.1 gi|325968033|ref|YP_004244225.1| - 0.55 10.6 3.7 5.2 7.5 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF883 PF05957.8 gi|325968033|ref|YP_004244225.1| - 0.56 10.6 3.1 2.2 8.7 2.2 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Orthopox_A5L PF06193.6 gi|325968033|ref|YP_004244225.1| - 0.7 9.8 5.5 2.6 7.9 3.8 1.7 1 1 0 1 1 1 0 Orthopoxvirus A5L protein-like SPOB_a PF14689.1 gi|325968033|ref|YP_004244225.1| - 0.76 9.3 3.2 1.8 8.2 0.3 2.7 1 1 1 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain AAA_11 PF13086.1 gi|325968033|ref|YP_004244225.1| - 0.83 9.1 3.6 0.91 9.0 2.5 1.1 1 0 0 1 1 1 0 AAA domain DUF1451 PF07295.6 gi|325968033|ref|YP_004244225.1| - 0.9 9.2 4.1 1.1 9.0 2.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1451) DUF1283 PF06932.6 gi|325968033|ref|YP_004244225.1| - 0.97 9.4 3.6 0.69 9.9 1.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1283) Zw10 PF06248.8 gi|325968033|ref|YP_004244225.1| - 1.2 7.1 7.0 1.4 6.9 4.8 1.1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 YtxH PF12732.2 gi|325968033|ref|YP_004244225.1| - 1.4 9.3 6.5 25 5.3 4.5 2.2 1 1 0 1 1 1 0 YtxH-like protein ACCA PF03255.9 gi|325968033|ref|YP_004244225.1| - 1.9 8.0 6.4 3.4 7.2 0.4 2.0 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit cwf21 PF08312.7 gi|325968033|ref|YP_004244225.1| - 2.1 8.2 13.8 3.2 7.6 3.2 3.4 1 1 1 2 2 2 0 cwf21 domain RICH PF05062.7 gi|325968033|ref|YP_004244225.1| - 2.6 8.2 8.0 2 8.5 1.1 2.7 1 1 2 3 3 3 0 RICH domain KIP1 PF07765.7 gi|325968033|ref|YP_004244225.1| - 4.6 7.1 5.5 6.4 6.6 1.1 2.3 1 1 0 2 2 2 0 KIP1-like protein Lipoprotein_19 PF13617.1 gi|325968033|ref|YP_004244225.1| - 9.6 5.9 6.8 2.4 7.8 0.2 2.7 3 0 0 3 3 3 0 YnbE-like lipoprotein PsiE PF06146.7 gi|325968034|ref|YP_004244226.1| - 1.7e-08 34.5 8.3 1.7e-08 34.5 5.7 2.0 2 1 0 2 2 2 1 Phosphate-starvation-inducible E DUF1109 PF06532.6 gi|325968034|ref|YP_004244226.1| - 2.3 7.6 14.4 0.22 10.9 4.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1109) Nol1_Nop2_Fmu PF01189.12 gi|325968037|ref|YP_004244229.1| - 5.9e-40 137.4 0.0 1.4e-37 129.6 0.0 2.1 2 0 0 2 2 2 2 NOL1/NOP2/sun family PUA PF01472.15 gi|325968037|ref|YP_004244229.1| - 2.4e-17 62.4 2.3 8.1e-17 60.7 1.6 1.9 2 0 0 2 2 2 1 PUA domain Methyltransf_26 PF13659.1 gi|325968037|ref|YP_004244229.1| - 2.6e-07 30.6 0.0 4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968037|ref|YP_004244229.1| - 1.2e-06 28.1 0.0 2.2e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325968037|ref|YP_004244229.1| - 1.2e-05 25.8 0.0 2.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|325968037|ref|YP_004244229.1| - 4.1e-05 23.6 0.0 8.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 FtsJ-like methyltransferase MTS PF05175.9 gi|325968037|ref|YP_004244229.1| - 0.0045 16.3 0.0 0.0073 15.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|325968037|ref|YP_004244229.1| - 0.005 17.2 0.0 0.024 15.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|325968037|ref|YP_004244229.1| - 0.024 13.5 0.0 0.08 11.8 0.0 1.8 2 0 0 2 2 2 0 Fibrillarin Methyltransf_12 PF08242.7 gi|325968037|ref|YP_004244229.1| - 0.025 15.0 0.0 0.065 13.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.5 gi|325968037|ref|YP_004244229.1| - 0.043 13.3 0.0 0.072 12.5 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Cons_hypoth95 PF03602.10 gi|325968037|ref|YP_004244229.1| - 0.08 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_edit PF04073.10 gi|325968038|ref|YP_004244230.1| - 5.8e-10 39.0 0.0 7.4e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain GalKase_gal_bdg PF10509.4 gi|325968039|ref|YP_004244231.1| - 1.3e-14 53.1 0.0 2.4e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GHMP_kinases_N PF00288.21 gi|325968039|ref|YP_004244231.1| - 1.5e-13 50.5 2.1 2.6e-13 49.8 0.2 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|325968039|ref|YP_004244231.1| - 3.1e-13 49.7 0.0 8.8e-13 48.2 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalP_UDP_transf PF01087.17 gi|325968040|ref|YP_004244232.1| - 2e-23 83.3 0.0 3.4e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|325968040|ref|YP_004244232.1| - 3.8e-17 62.3 0.0 6.9e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|325968040|ref|YP_004244232.1| - 1.5e-05 25.2 0.6 0.0001 22.4 0.3 2.1 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|325968040|ref|YP_004244232.1| - 7.4e-05 23.2 0.1 0.015 15.8 0.0 2.2 2 0 0 2 2 2 2 HIT domain Pyr_redox_2 PF07992.9 gi|325968041|ref|YP_004244233.1| - 8.1e-33 114.0 0.2 1e-32 113.6 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|325968041|ref|YP_004244233.1| - 7.4e-20 71.8 0.3 2.9e-14 53.5 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|325968041|ref|YP_004244233.1| - 2.8e-17 62.8 1.5 5.5e-13 49.1 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|325968041|ref|YP_004244233.1| - 9.8e-10 37.8 5.1 1.5e-05 24.0 0.7 3.6 4 0 0 4 4 4 3 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|325968041|ref|YP_004244233.1| - 1e-07 31.3 1.0 0.00031 19.9 0.5 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|325968041|ref|YP_004244233.1| - 1.3e-07 31.0 1.6 1.5e-06 27.5 0.0 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|325968041|ref|YP_004244233.1| - 2.1e-07 29.7 2.7 0.00014 20.4 0.7 3.3 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.19 gi|325968041|ref|YP_004244233.1| - 3.9e-07 29.3 8.5 0.00033 19.6 2.0 3.1 2 1 1 3 3 3 2 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|325968041|ref|YP_004244233.1| - 5.4e-07 28.8 0.1 0.00025 20.0 0.0 2.5 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|325968041|ref|YP_004244233.1| - 1.6e-06 27.2 5.6 4.7e-06 25.7 0.5 2.6 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.12 gi|325968041|ref|YP_004244233.1| - 2.4e-06 26.8 1.2 0.00031 19.9 0.1 2.3 2 0 0 2 2 2 2 Thi4 family NAD_binding_8 PF13450.1 gi|325968041|ref|YP_004244233.1| - 5.6e-06 26.2 2.5 0.0067 16.4 0.5 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|325968041|ref|YP_004244233.1| - 5.5e-05 23.3 0.2 0.051 13.8 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Lycopene_cycl PF05834.7 gi|325968041|ref|YP_004244233.1| - 7.9e-05 21.7 0.3 0.21 10.4 0.2 3.2 2 1 1 3 3 3 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|325968041|ref|YP_004244233.1| - 0.0034 17.1 1.1 9.6 5.9 1.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Shikimate_DH PF01488.15 gi|325968041|ref|YP_004244233.1| - 0.0074 16.3 0.3 0.31 11.1 0.0 2.4 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase FMO-like PF00743.14 gi|325968041|ref|YP_004244233.1| - 0.087 10.9 0.0 0.12 10.5 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Trp_halogenase PF04820.9 gi|325968041|ref|YP_004244233.1| - 0.34 9.4 4.3 1.4 7.4 1.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase HTH_11 PF08279.7 gi|325968042|ref|YP_004244234.1| - 0.0041 16.7 0.3 0.012 15.2 0.1 1.9 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.7 gi|325968042|ref|YP_004244234.1| - 0.02 14.4 0.2 0.057 12.9 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|325968042|ref|YP_004244234.1| - 0.02 14.6 1.3 4.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|325968042|ref|YP_004244234.1| - 0.025 13.9 0.1 0.081 12.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_36 PF13730.1 gi|325968042|ref|YP_004244234.1| - 0.027 14.5 0.1 0.05 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|325968042|ref|YP_004244234.1| - 0.056 13.7 0.1 0.15 12.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF1641 PF07849.6 gi|325968043|ref|YP_004244235.1| - 0.0017 17.8 0.1 0.0017 17.8 0.1 3.4 4 1 0 4 4 4 1 Protein of unknown function (DUF1641) Hamartin PF04388.7 gi|325968043|ref|YP_004244235.1| - 0.079 11.6 0.5 0.12 11.0 0.4 1.2 1 0 0 1 1 1 0 Hamartin protein FliS PF02561.9 gi|325968043|ref|YP_004244235.1| - 0.47 10.3 3.0 11 5.8 0.0 2.3 2 1 0 2 2 2 0 Flagellar protein FliS Pyr_redox_2 PF07992.9 gi|325968044|ref|YP_004244236.1| - 4.4e-13 49.5 0.0 4.6e-12 46.2 0.0 2.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|325968044|ref|YP_004244236.1| - 6.8e-06 25.9 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|325968044|ref|YP_004244236.1| - 2.2e-05 24.7 0.0 0.056 13.8 0.0 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|325968044|ref|YP_004244236.1| - 0.00038 19.4 0.0 0.017 14.0 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|325968044|ref|YP_004244236.1| - 0.00082 18.3 0.0 0.059 12.2 0.0 2.4 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|325968044|ref|YP_004244236.1| - 0.001 19.0 0.0 0.0031 17.5 0.0 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|325968044|ref|YP_004244236.1| - 0.0015 17.0 0.0 0.011 14.2 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|325968044|ref|YP_004244236.1| - 0.0063 15.6 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain TrkA_N PF02254.13 gi|325968044|ref|YP_004244236.1| - 0.063 13.2 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain GIDA PF01134.17 gi|325968044|ref|YP_004244236.1| - 0.074 11.9 0.0 3.5 6.3 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|325968044|ref|YP_004244236.1| - 0.086 13.1 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.1 gi|325968044|ref|YP_004244236.1| - 0.12 12.4 0.0 7.5 6.5 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TusA PF01206.12 gi|325968045|ref|YP_004244237.1| - 4.2e-18 64.7 0.0 4.9e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|325968045|ref|YP_004244237.1| - 0.054 13.0 0.0 0.097 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|325968046|ref|YP_004244238.1| - 1.1e-15 57.7 0.5 9.8e-15 54.6 0.4 1.9 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|325968046|ref|YP_004244238.1| - 2e-06 27.8 0.0 3.3e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.5 gi|325968046|ref|YP_004244238.1| - 0.11 11.9 0.2 12 5.4 0.1 2.5 2 0 0 2 2 2 0 Anti-repressor SinI DAO PF01266.19 gi|325968049|ref|YP_004244241.1| - 5e-15 55.2 0.1 4.5e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|325968049|ref|YP_004244241.1| - 6.5e-11 42.4 0.1 0.0016 18.3 0.0 3.2 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|325968049|ref|YP_004244241.1| - 5.2e-10 38.3 0.0 1.2e-05 23.9 0.0 2.4 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.17 gi|325968049|ref|YP_004244241.1| - 3.4e-09 36.0 1.5 0.00044 19.2 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|325968049|ref|YP_004244241.1| - 3.2e-06 27.3 0.0 0.025 14.6 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|325968049|ref|YP_004244241.1| - 7.7e-06 25.0 0.2 0.00044 19.2 0.0 2.7 3 0 0 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.7 gi|325968049|ref|YP_004244241.1| - 1.3e-05 24.3 0.0 0.00043 19.3 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|325968049|ref|YP_004244241.1| - 5.8e-05 23.0 0.0 0.0021 18.0 0.0 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|325968049|ref|YP_004244241.1| - 0.00019 21.2 0.0 0.0039 16.9 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|325968049|ref|YP_004244241.1| - 0.0004 19.5 0.2 0.0066 15.5 0.0 2.6 3 0 0 3 3 3 1 Thi4 family Pyr_redox PF00070.22 gi|325968049|ref|YP_004244241.1| - 0.00042 20.6 0.0 2 8.8 0.0 3.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|325968049|ref|YP_004244241.1| - 0.016 14.2 0.0 0.033 13.2 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.9 gi|325968049|ref|YP_004244241.1| - 0.052 12.1 0.0 0.081 11.5 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_oxidored PF12831.2 gi|325968049|ref|YP_004244241.1| - 0.058 12.4 0.2 0.12 11.3 0.1 1.6 2 0 0 2 2 2 0 FAD dependent oxidoreductase Adenylsucc_synt PF00709.16 gi|325968050|ref|YP_004244242.1| - 1.2e-75 254.8 0.4 3.3e-37 128.1 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Lyase_1 PF00206.15 gi|325968051|ref|YP_004244243.1| - 6.8e-37 127.3 0.0 9.6e-37 126.8 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|325968051|ref|YP_004244243.1| - 1.3e-29 102.3 0.0 3.2e-29 101.1 0.0 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal Antitoxin-MazE PF04014.13 gi|325968054|ref|YP_004244246.1| - 6.5e-12 44.9 0.6 1.2e-11 44.0 0.4 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ADC PF06314.6 gi|325968055|ref|YP_004244247.1| - 8.1e-45 152.9 0.0 9.5e-45 152.7 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) MFS_1 PF07690.11 gi|325968056|ref|YP_004244248.1| - 3.2e-55 187.2 47.6 3.2e-55 187.2 33.0 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325968056|ref|YP_004244248.1| - 0.00021 20.0 36.8 0.0003 19.4 25.0 1.5 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|325968056|ref|YP_004244248.1| - 0.26 11.0 23.0 3.2 7.6 0.1 5.1 4 1 0 4 4 4 0 MFS_1 like family ILVD_EDD PF00920.16 gi|325968057|ref|YP_004244249.1| - 1.6e-222 739.5 0.4 1.8e-222 739.3 0.3 1.0 1 0 0 1 1 1 1 Dehydratase family Iso_dh PF00180.15 gi|325968058|ref|YP_004244250.1| - 2.7e-70 237.0 0.0 3.3e-70 236.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase adh_short_C2 PF13561.1 gi|325968059|ref|YP_004244251.1| - 3.4e-40 138.3 0.2 4e-40 138.0 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|325968059|ref|YP_004244251.1| - 6.2e-29 101.0 0.4 9.1e-29 100.5 0.3 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|325968059|ref|YP_004244251.1| - 1.5e-15 57.3 0.2 2.1e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|325968059|ref|YP_004244251.1| - 0.0015 17.9 1.4 0.017 14.5 0.9 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|325968059|ref|YP_004244251.1| - 0.014 15.0 1.5 0.037 13.6 0.2 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.1 gi|325968059|ref|YP_004244251.1| - 0.071 13.4 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PdxA PF04166.7 gi|325968060|ref|YP_004244252.1| - 1.1e-86 290.7 0.0 1.3e-86 290.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA FA_synthesis PF02504.10 gi|325968060|ref|YP_004244252.1| - 0.0089 14.9 0.1 0.018 13.8 0.0 1.5 2 0 0 2 2 2 1 Fatty acid synthesis protein Iso_dh PF00180.15 gi|325968060|ref|YP_004244252.1| - 0.05 12.5 0.0 0.32 9.8 0.0 2.0 2 0 0 2 2 2 0 Isocitrate/isopropylmalate dehydrogenase DUF1537 PF07005.6 gi|325968061|ref|YP_004244253.1| - 2e-07 30.9 0.0 1.3e-05 24.9 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function, DUF1537 CCG PF02754.11 gi|325968062|ref|YP_004244254.1| - 1e-05 25.4 0.0 0.00077 19.4 0.1 2.7 2 1 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|325968063|ref|YP_004244255.1| - 3.2e-09 36.6 2.5 4.2e-09 36.3 1.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968063|ref|YP_004244255.1| - 1.5e-07 31.6 1.5 2.3e-07 31.0 1.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968063|ref|YP_004244255.1| - 9.6e-05 22.5 3.9 0.0081 16.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968063|ref|YP_004244255.1| - 0.00014 22.1 11.1 0.0021 18.4 7.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968063|ref|YP_004244255.1| - 0.00015 21.5 9.2 0.0072 16.1 7.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968063|ref|YP_004244255.1| - 0.004 17.5 8.1 0.011 16.1 1.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|325968063|ref|YP_004244255.1| - 0.0043 16.6 4.1 0.017 14.7 0.2 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.22 gi|325968063|ref|YP_004244255.1| - 0.007 15.9 12.6 0.039 13.5 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968063|ref|YP_004244255.1| - 0.01 15.6 7.0 0.53 10.1 0.3 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325968063|ref|YP_004244255.1| - 0.085 12.7 11.1 0.091 12.6 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Ank_3 PF13606.1 gi|325968063|ref|YP_004244255.1| - 0.13 12.6 0.1 24 5.5 0.0 2.4 2 0 0 2 2 2 0 Ankyrin repeat Fer4_15 PF13459.1 gi|325968063|ref|YP_004244255.1| - 0.64 10.6 5.2 9.9 6.8 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|325968063|ref|YP_004244255.1| - 1.3 9.1 12.3 0.49 10.4 2.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|325968063|ref|YP_004244255.1| - 2.3 9.0 13.7 8.3 7.2 1.9 2.1 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain FAD-oxidase_C PF02913.14 gi|325968064|ref|YP_004244256.1| - 3.1e-40 138.0 0.0 4.5e-40 137.5 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|325968064|ref|YP_004244256.1| - 3.8e-37 126.8 0.1 9.3e-37 125.5 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain UbiA PF01040.13 gi|325968065|ref|YP_004244257.1| - 1.1e-38 132.9 28.2 1.4e-38 132.5 19.5 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family PepSY_TM_1 PF13172.1 gi|325968065|ref|YP_004244257.1| - 0.00035 20.2 3.1 0.00035 20.2 2.2 3.1 2 0 0 2 2 2 1 PepSY-associated TM helix Peptidase_M50 PF02163.17 gi|325968065|ref|YP_004244257.1| - 0.22 10.4 3.0 0.64 8.9 1.8 2.0 1 1 0 1 1 1 0 Peptidase family M50 DUF4564 PF15169.1 gi|325968065|ref|YP_004244257.1| - 0.35 10.5 4.2 0.13 11.9 0.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4564) Antitoxin-MazE PF04014.13 gi|325968066|ref|YP_004244258.1| - 1e-05 25.1 0.0 0.0031 17.1 0.0 2.5 2 0 0 2 2 2 2 Antidote-toxin recognition MazE Radical_SAM PF04055.16 gi|325968069|ref|YP_004244261.1| - 2.9e-14 53.5 0.0 6.3e-14 52.4 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|325968069|ref|YP_004244261.1| - 0.11 12.4 0.1 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 B12 binding domain eIF-5_eIF-2B PF01873.12 gi|325968070|ref|YP_004244262.1| - 1.3e-31 108.8 0.0 1.6e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.7 gi|325968070|ref|YP_004244262.1| - 0.0032 16.7 0.7 0.005 16.1 0.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Elf1 PF05129.8 gi|325968070|ref|YP_004244262.1| - 0.017 14.8 0.1 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF2387 PF09526.5 gi|325968070|ref|YP_004244262.1| - 0.026 14.4 0.3 0.052 13.4 0.2 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|325968070|ref|YP_004244262.1| - 0.07 12.7 0.2 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|325968070|ref|YP_004244262.1| - 0.072 13.4 1.0 0.14 12.4 0.7 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|325968070|ref|YP_004244262.1| - 0.087 12.3 2.6 0.43 10.1 1.8 1.9 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 ACT_4 PF13291.1 gi|325968071|ref|YP_004244263.1| - 0.2 12.0 1.8 4.7 7.6 0.1 3.2 2 1 0 2 2 2 0 ACT domain CCG PF02754.11 gi|325968072|ref|YP_004244264.1| - 9.9e-10 38.2 0.0 1.8e-06 27.8 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain DUF4596 PF15363.1 gi|325968073|ref|YP_004244265.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4596) Peptidase_M24 PF00557.19 gi|325968074|ref|YP_004244266.1| - 4.8e-36 124.2 0.0 6.1e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|325968074|ref|YP_004244266.1| - 2.2e-17 63.7 0.0 3.5e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF998 PF06197.8 gi|325968075|ref|YP_004244267.1| - 1.6e-27 95.9 22.2 1.8e-27 95.8 15.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) YiaAB PF05360.9 gi|325968075|ref|YP_004244267.1| - 0.028 13.9 0.9 0.028 13.9 0.6 2.5 3 0 0 3 3 3 0 yiaA/B two helix domain DUF3953 PF13129.1 gi|325968075|ref|YP_004244267.1| - 0.037 13.6 1.2 0.037 13.6 0.9 3.7 4 0 0 4 4 4 0 Protein of unknown function (DUF3953) YfhO PF09586.5 gi|325968075|ref|YP_004244267.1| - 2.1 6.2 10.5 2.4 6.0 7.3 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Thioredoxin_4 PF13462.1 gi|325968076|ref|YP_004244268.1| - 2.3e-09 37.4 0.0 3.6e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|325968076|ref|YP_004244268.1| - 5.2e-06 26.6 0.0 2.3e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|325968076|ref|YP_004244268.1| - 0.0015 18.1 0.2 0.37 10.3 0.0 2.3 2 0 0 2 2 2 2 DSBA-like thioredoxin domain 7TMR-DISM_7TM PF07695.6 gi|325968077|ref|YP_004244269.1| - 0.61 9.7 24.5 1.2 8.7 17.0 1.5 1 1 0 1 1 1 0 7TM diverse intracellular signalling Oxidored_q1 PF00361.15 gi|325968078|ref|YP_004244270.1| - 8.5e-25 87.5 30.9 8.5e-25 87.5 21.4 3.2 1 1 2 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF2537 PF10801.3 gi|325968078|ref|YP_004244270.1| - 0.0012 18.9 1.2 0.0012 18.9 0.8 5.2 4 2 1 6 6 6 1 Protein of unknown function (DUF2537) ATP1G1_PLM_MAT8 PF02038.11 gi|325968078|ref|YP_004244270.1| - 0.082 11.9 1.3 0.43 9.6 0.9 2.3 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family Oxidored_q2 PF00420.19 gi|325968079|ref|YP_004244271.1| - 2.4e-08 33.4 9.7 2.9e-08 33.2 6.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Fun_ATP-synt_8 PF05933.8 gi|325968079|ref|YP_004244271.1| - 0.16 11.9 7.5 0.44 10.6 1.0 2.4 2 0 0 2 2 2 0 Fungal ATP synthase protein 8 (A6L) DUF4244 PF14029.1 gi|325968079|ref|YP_004244271.1| - 3.7 6.7 5.3 1.6 7.8 0.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4244) Oxidored_q3 PF00499.15 gi|325968080|ref|YP_004244272.1| - 0.0026 17.5 23.4 0.0026 17.5 16.2 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CobA_CobO_BtuR PF02572.10 gi|325968081|ref|YP_004244273.1| - 1.1e-37 129.3 0.0 3.2e-37 127.7 0.0 1.6 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_14 PF13173.1 gi|325968081|ref|YP_004244273.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain BtpA PF03437.10 gi|325968082|ref|YP_004244274.1| - 1.8e-73 246.9 1.2 2e-73 246.8 0.9 1.0 1 0 0 1 1 1 1 BtpA family XdhC_C PF13478.1 gi|325968082|ref|YP_004244274.1| - 0.056 13.7 0.8 1.2 9.4 0.1 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain Asp_Glu_race PF01177.17 gi|325968082|ref|YP_004244274.1| - 0.12 12.2 1.7 0.47 10.3 0.6 2.3 2 1 0 2 2 2 0 Asp/Glu/Hydantoin racemase DUF2632 PF10943.3 gi|325968083|ref|YP_004244275.1| - 4.7 6.6 8.4 5.7 6.3 5.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2632) HTH_5 PF01022.15 gi|325968084|ref|YP_004244276.1| - 3.8e-08 32.8 0.5 6.1e-08 32.2 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|325968084|ref|YP_004244276.1| - 2.9e-06 27.0 0.1 4.4e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|325968084|ref|YP_004244276.1| - 1.7e-05 24.2 0.0 0.0001 21.8 0.0 2.1 1 1 1 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|325968084|ref|YP_004244276.1| - 3.1e-05 23.2 0.3 4.8e-05 22.6 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|325968084|ref|YP_004244276.1| - 0.00029 20.4 0.0 0.0006 19.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|325968084|ref|YP_004244276.1| - 0.00041 19.9 0.5 0.00072 19.1 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_29 PF13551.1 gi|325968084|ref|YP_004244276.1| - 0.0017 18.4 0.0 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix MarR PF01047.17 gi|325968084|ref|YP_004244276.1| - 0.0079 15.8 0.4 0.016 14.9 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.1 gi|325968084|ref|YP_004244276.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|325968084|ref|YP_004244276.1| - 0.034 13.8 0.1 0.055 13.1 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_30 PF13556.1 gi|325968084|ref|YP_004244276.1| - 0.054 13.0 0.1 0.091 12.3 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|325968084|ref|YP_004244276.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HALZ PF02183.13 gi|325968085|ref|YP_004244277.1| - 3.4e-05 23.4 6.0 0.00034 20.2 0.8 1.8 1 1 1 2 2 2 2 Homeobox associated leucine zipper IncA PF04156.9 gi|325968085|ref|YP_004244277.1| - 0.0055 16.3 0.3 0.0095 15.5 0.2 1.3 1 0 0 1 1 1 1 IncA protein GAS PF13851.1 gi|325968085|ref|YP_004244277.1| - 0.021 14.0 0.5 0.03 13.5 0.4 1.1 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.4 gi|325968085|ref|YP_004244277.1| - 0.023 14.8 2.3 0.04 14.0 1.6 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 rRNA_proc-arch PF13234.1 gi|325968085|ref|YP_004244277.1| - 0.053 12.6 0.7 0.096 11.8 0.5 1.3 1 0 0 1 1 1 0 rRNA-processing arch domain HemX PF04375.9 gi|325968085|ref|YP_004244277.1| - 0.19 10.2 0.0 0.26 9.8 0.0 1.1 1 0 0 1 1 1 0 HemX V-ATPase_C PF03223.10 gi|325968085|ref|YP_004244277.1| - 0.25 10.2 1.4 0.35 9.7 0.9 1.1 1 0 0 1 1 1 0 V-ATPase subunit C bZIP_1 PF00170.16 gi|325968085|ref|YP_004244277.1| - 0.6 10.0 1.1 0.82 9.6 0.8 1.2 1 0 0 1 1 1 0 bZIP transcription factor Fer4_7 PF12838.2 gi|325968086|ref|YP_004244278.1| - 2.3e-19 69.4 28.6 1.3e-07 31.8 9.0 3.7 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968086|ref|YP_004244278.1| - 4.8e-19 67.1 38.3 8.7e-08 31.4 2.6 4.9 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325968086|ref|YP_004244278.1| - 1.7e-18 65.6 37.4 1.2e-06 28.0 1.2 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968086|ref|YP_004244278.1| - 9.1e-15 54.2 26.1 1.5e-07 31.1 4.5 4.4 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968086|ref|YP_004244278.1| - 7.3e-14 51.2 51.8 3.9e-06 26.5 6.2 4.3 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968086|ref|YP_004244278.1| - 1e-12 48.1 45.1 7.9e-07 29.2 7.3 4.3 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325968086|ref|YP_004244278.1| - 3.9e-12 46.7 25.1 0.00084 20.0 0.3 4.9 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|325968086|ref|YP_004244278.1| - 1.8e-09 37.8 21.4 0.016 15.6 0.5 5.5 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325968086|ref|YP_004244278.1| - 2.2e-09 36.6 34.9 4.1e-05 23.2 2.0 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|325968086|ref|YP_004244278.1| - 9.5e-07 28.7 31.5 0.0082 16.1 1.1 4.2 2 2 3 5 5 5 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325968086|ref|YP_004244278.1| - 2e-05 25.0 27.0 0.013 16.0 0.3 4.7 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|325968086|ref|YP_004244278.1| - 0.00044 20.5 33.2 0.051 13.9 2.1 5.1 3 2 2 5 5 5 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|325968086|ref|YP_004244278.1| - 0.0055 17.1 54.7 0.0074 16.7 3.4 5.8 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|325968086|ref|YP_004244278.1| - 0.011 16.0 3.1 0.011 16.0 2.1 5.7 7 0 0 7 7 5 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|325968086|ref|YP_004244278.1| - 0.029 14.7 31.9 0.085 13.2 0.9 5.3 5 1 1 6 6 5 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|325968086|ref|YP_004244278.1| - 0.3 11.0 18.5 1.8 8.4 0.3 3.4 2 2 1 3 3 3 0 4Fe-4S dicluster domain Nitrate_red_del PF02613.10 gi|325968087|ref|YP_004244279.1| - 2.1e-09 37.3 0.1 4.8e-09 36.1 0.0 1.7 2 0 0 2 2 2 1 Nitrate reductase delta subunit V-ATPase_H_N PF03224.9 gi|325968087|ref|YP_004244279.1| - 0.032 13.3 0.2 0.092 11.8 0.1 1.7 1 1 1 2 2 2 0 V-ATPase subunit H Fer4_11 PF13247.1 gi|325968088|ref|YP_004244280.1| - 4.1e-25 87.5 7.2 4.1e-25 87.5 5.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968088|ref|YP_004244280.1| - 6.4e-19 68.0 6.8 7.1e-09 35.9 0.0 3.4 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968088|ref|YP_004244280.1| - 2.7e-13 49.9 20.2 1.4e-05 25.2 2.7 3.8 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968088|ref|YP_004244280.1| - 4.8e-13 48.1 30.5 1.5e-06 27.5 4.2 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325968088|ref|YP_004244280.1| - 2.9e-11 42.9 21.3 2.5e-06 27.1 8.4 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325968088|ref|YP_004244280.1| - 3e-09 36.3 34.3 1.2e-05 24.9 3.0 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|325968088|ref|YP_004244280.1| - 4.7e-09 35.6 35.5 1.3e-05 24.7 2.1 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|325968088|ref|YP_004244280.1| - 6.6e-08 32.5 35.8 0.022 15.2 4.1 4.6 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|325968088|ref|YP_004244280.1| - 8.7e-07 28.7 35.0 0.00016 21.7 2.2 4.5 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|325968088|ref|YP_004244280.1| - 5.7e-06 26.5 20.3 0.017 15.4 1.2 4.2 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325968088|ref|YP_004244280.1| - 6.2e-06 26.1 24.6 0.0031 17.5 6.1 3.4 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325968088|ref|YP_004244280.1| - 8.9e-06 26.3 20.4 0.06 14.0 1.0 4.3 3 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|325968088|ref|YP_004244280.1| - 0.00027 20.7 25.3 0.00048 19.9 6.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968088|ref|YP_004244280.1| - 0.0091 16.4 24.3 0.17 12.2 2.6 4.2 3 1 0 4 4 4 2 4Fe-4S dicluster domain PyrI_C PF02748.10 gi|325968088|ref|YP_004244280.1| - 7.8 6.0 11.9 30 4.1 8.2 1.9 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DoxD PF04173.8 gi|325968089|ref|YP_004244281.1| - 8.3e-54 181.7 3.7 9.2e-54 181.5 2.6 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.7 gi|325968089|ref|YP_004244281.1| - 0.019 15.3 5.6 0.019 15.3 3.9 1.8 2 0 0 2 2 2 0 DoxX DoxA PF07680.6 gi|325968090|ref|YP_004244282.1| - 1.3e-37 128.3 0.3 1.6e-37 128.1 0.2 1.0 1 0 0 1 1 1 1 TQO small subunit DoxA PaREP1 PF05942.6 gi|325968091|ref|YP_004244283.1| - 4.5e-26 90.9 0.5 5.5e-26 90.6 0.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TPR_11 PF13414.1 gi|325968091|ref|YP_004244283.1| - 0.05 13.2 0.1 0.26 10.9 0.0 2.1 1 1 0 1 1 1 0 TPR repeat PMEI PF04043.10 gi|325968091|ref|YP_004244283.1| - 0.056 13.3 0.2 0.074 12.9 0.1 1.2 1 0 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor DUF357 PF04010.8 gi|325968091|ref|YP_004244283.1| - 0.11 12.1 0.1 4.8 6.9 0.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF357) DUF677 PF05055.7 gi|325968091|ref|YP_004244283.1| - 0.12 11.0 0.1 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Lysozyme_like PF13702.1 gi|325968091|ref|YP_004244283.1| - 0.16 11.4 0.0 0.37 10.2 0.0 1.5 1 1 1 2 2 2 0 Lysozyme-like TatC PF00902.13 gi|325968092|ref|YP_004244284.1| - 9.5e-39 133.0 27.5 1.3e-38 132.5 19.1 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) HTH_1 PF00126.22 gi|325968093|ref|YP_004244285.1| - 3.2e-12 45.9 0.0 5.4e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.1 gi|325968093|ref|YP_004244285.1| - 0.00038 20.5 0.0 0.00046 20.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.1 gi|325968093|ref|YP_004244285.1| - 0.0032 17.0 0.0 0.0057 16.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.1 gi|325968093|ref|YP_004244285.1| - 0.015 15.0 0.0 0.033 13.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_28 PF13518.1 gi|325968093|ref|YP_004244285.1| - 0.025 14.5 0.1 0.044 13.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|325968093|ref|YP_004244285.1| - 0.049 13.2 0.0 0.089 12.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rho_N PF07498.7 gi|325968094|ref|YP_004244286.1| - 2.3e-05 24.0 0.2 0.00017 21.2 0.1 2.1 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain FerA PF08165.6 gi|325968094|ref|YP_004244286.1| - 0.022 14.4 0.2 0.078 12.6 0.0 1.9 2 0 0 2 2 2 0 FerA (NUC095) domain CcdA PF07362.7 gi|325968094|ref|YP_004244286.1| - 0.074 12.9 0.2 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA MttA_Hcf106 PF02416.11 gi|325968095|ref|YP_004244287.1| - 9.2e-14 50.2 0.5 4e-13 48.2 0.3 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family Rho_N PF07498.7 gi|325968095|ref|YP_004244287.1| - 0.00085 19.0 0.2 0.17 11.6 0.0 2.4 2 0 0 2 2 2 2 Rho termination factor, N-terminal domain Hom_end PF05204.9 gi|325968095|ref|YP_004244287.1| - 0.0012 18.7 0.1 2.4 8.1 0.0 2.9 1 1 2 3 3 3 2 Homing endonuclease SAP PF02037.22 gi|325968095|ref|YP_004244287.1| - 0.012 15.0 0.2 0.51 9.9 0.0 2.3 2 0 0 2 2 2 0 SAP domain Sigma70_r3 PF04539.11 gi|325968095|ref|YP_004244287.1| - 0.055 13.3 0.1 3.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Sigma-70 region 3 SASP PF00269.15 gi|325968095|ref|YP_004244287.1| - 0.12 12.2 0.1 9.9 6.1 0.0 2.3 1 1 1 2 2 2 0 Small, acid-soluble spore proteins, alpha/beta type AhpC-TSA PF00578.16 gi|325968097|ref|YP_004244289.1| - 4e-29 100.8 0.0 8.5e-29 99.7 0.0 1.5 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.5 gi|325968097|ref|YP_004244289.1| - 1.5e-14 53.7 0.0 2e-14 53.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|325968097|ref|YP_004244289.1| - 2.4e-11 43.0 0.0 4.1e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF126 PF01989.11 gi|325968098|ref|YP_004244290.1| - 3.5e-26 90.7 0.7 5.6e-26 90.0 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF1886 PF09171.5 gi|325968099|ref|YP_004244291.1| - 9.8e-75 250.7 0.0 1.2e-74 250.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) TCR_zetazeta PF11628.3 gi|325968100|ref|YP_004244292.1| - 2.1 7.8 5.5 0.85 9.1 0.3 2.6 2 0 0 2 2 2 0 T-cell surface glycoprotein CD3 zeta chain Peptidase_M50 PF02163.17 gi|325968101|ref|YP_004244293.1| - 2.4e-22 78.8 6.7 2.4e-22 78.8 4.7 2.7 2 1 0 2 2 2 1 Peptidase family M50 PDZ_1 PF12812.2 gi|325968101|ref|YP_004244293.1| - 0.028 14.2 0.1 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 PDZ-like domain DUF2208 PF09973.4 gi|325968103|ref|YP_004244295.1| - 4.9e-26 91.4 18.4 4.3e-24 85.0 12.8 2.1 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) DsbB PF02600.11 gi|325968103|ref|YP_004244295.1| - 0.01 15.6 0.4 0.019 14.7 0.3 1.4 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB RseC_MucC PF04246.7 gi|325968103|ref|YP_004244295.1| - 0.016 14.7 0.1 0.016 14.7 0.1 2.2 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF106 PF01956.11 gi|325968103|ref|YP_004244295.1| - 0.83 9.1 11.2 0.82 9.1 6.6 2.0 1 1 0 1 1 1 0 Integral membrane protein DUF106 Ribosomal_60s PF00428.14 gi|325968104|ref|YP_004244296.1| - 1.5e-14 54.1 24.9 3.8e-14 52.8 17.3 1.6 1 1 0 1 1 1 1 60s Acidic ribosomal protein DSBA PF01323.15 gi|325968104|ref|YP_004244296.1| - 0.032 13.7 0.9 0.041 13.4 0.6 1.1 1 0 0 1 1 1 0 DSBA-like thioredoxin domain PepSY_2 PF13670.1 gi|325968104|ref|YP_004244296.1| - 0.042 13.7 7.2 0.67 9.8 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF2862 PF11061.3 gi|325968105|ref|YP_004244297.1| - 0.088 12.5 0.1 0.18 11.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2862) ECH PF00378.15 gi|325968106|ref|YP_004244298.1| - 2e-54 184.3 0.0 2.2e-54 184.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family AFOR_C PF01314.13 gi|325968107|ref|YP_004244299.1| - 1.8e-102 342.9 0.0 2.3e-102 342.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|325968107|ref|YP_004244299.1| - 2.5e-70 235.9 0.0 3.8e-70 235.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ubie_methyltran PF01209.13 gi|325968108|ref|YP_004244300.1| - 4.9e-13 48.7 0.0 6.9e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|325968108|ref|YP_004244300.1| - 2.4e-07 31.1 0.0 3.6e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325968108|ref|YP_004244300.1| - 0.002 17.8 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968108|ref|YP_004244300.1| - 0.013 15.1 0.0 0.17 11.4 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325968108|ref|YP_004244300.1| - 0.092 13.3 0.0 0.24 11.9 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain PTH2 PF01981.11 gi|325968109|ref|YP_004244301.1| - 2.6e-42 143.1 0.0 2.9e-42 143.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF3354 PF11834.3 gi|325968109|ref|YP_004244301.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3354) DAO PF01266.19 gi|325968110|ref|YP_004244302.1| - 3.6e-10 39.2 6.8 5.4e-09 35.4 4.7 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|325968110|ref|YP_004244302.1| - 1.9e-07 30.5 0.3 2.3e-05 23.6 0.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|325968110|ref|YP_004244302.1| - 9.7e-07 27.9 3.1 0.00012 21.1 1.0 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|325968110|ref|YP_004244302.1| - 1.6e-05 24.8 0.4 4.4e-05 23.4 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|325968110|ref|YP_004244302.1| - 3.4e-05 23.0 1.3 5.2e-05 22.4 0.9 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|325968110|ref|YP_004244302.1| - 3.5e-05 22.4 0.8 6e-05 21.6 0.5 1.4 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|325968110|ref|YP_004244302.1| - 4.6e-05 22.6 1.1 4.6e-05 22.6 0.8 2.6 3 0 0 3 3 2 1 Thi4 family GIDA PF01134.17 gi|325968110|ref|YP_004244302.1| - 8.6e-05 21.5 9.5 0.00044 19.2 0.8 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|325968110|ref|YP_004244302.1| - 0.00078 19.3 1.0 0.0012 18.7 0.3 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|325968110|ref|YP_004244302.1| - 0.017 13.7 1.4 1.6 7.2 0.1 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|325968110|ref|YP_004244302.1| - 0.022 13.6 2.3 0.44 9.4 0.6 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|325968110|ref|YP_004244302.1| - 0.049 13.7 2.9 0.12 12.3 1.5 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|325968110|ref|YP_004244302.1| - 0.049 13.0 1.7 0.076 12.3 1.2 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GDI PF00996.13 gi|325968110|ref|YP_004244302.1| - 0.24 9.6 0.9 0.29 9.4 0.2 1.4 2 0 0 2 2 2 0 GDP dissociation inhibitor ROK PF00480.15 gi|325968111|ref|YP_004244303.1| - 1.6e-36 125.8 2.3 2.1e-36 125.3 1.6 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|325968111|ref|YP_004244303.1| - 0.13 11.5 1.1 1.4 8.1 0.2 2.5 2 1 1 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family B12-binding_2 PF02607.12 gi|325968111|ref|YP_004244303.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain FGGY_N PF00370.16 gi|325968111|ref|YP_004244303.1| - 0.16 11.2 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Cas_Cas4 PF01930.12 gi|325968112|ref|YP_004244304.1| - 1.7e-10 41.0 0.3 2.6e-10 40.4 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|325968112|ref|YP_004244304.1| - 5.3e-09 35.8 0.0 1e-08 34.8 0.0 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|325968112|ref|YP_004244304.1| - 0.0022 17.7 0.0 0.0053 16.5 0.0 1.6 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) DUF1703 PF08011.6 gi|325968112|ref|YP_004244304.1| - 0.036 13.7 0.4 0.1 12.3 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1703) Usp PF00582.21 gi|325968113|ref|YP_004244305.1| - 9e-35 119.9 0.1 1e-34 119.7 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|325968113|ref|YP_004244305.1| - 0.0049 17.3 0.1 0.008 16.7 0.1 1.5 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase AAA_26 PF13500.1 gi|325968113|ref|YP_004244305.1| - 0.026 14.1 0.2 0.034 13.7 0.1 1.4 1 1 0 1 1 1 0 AAA domain AP_endonuc_2 PF01261.19 gi|325968113|ref|YP_004244305.1| - 0.031 13.5 0.0 0.55 9.4 0.0 2.1 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel MS_channel PF00924.13 gi|325968114|ref|YP_004244306.1| - 1.1e-08 34.6 0.3 1.1e-08 34.6 0.2 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel BCD PF15461.1 gi|325968114|ref|YP_004244306.1| - 0.033 13.6 3.1 0.043 13.2 2.2 1.2 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase YwiC PF14256.1 gi|325968114|ref|YP_004244306.1| - 0.48 10.5 4.0 0.77 9.8 2.7 1.2 1 0 0 1 1 1 0 YwiC-like protein TrkA_N PF02254.13 gi|325968115|ref|YP_004244307.1| - 1.6e-23 82.8 0.4 2.5e-23 82.2 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|325968115|ref|YP_004244307.1| - 2.2e-05 23.9 0.2 4.5e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|325968115|ref|YP_004244307.1| - 0.00018 21.6 0.1 0.00032 20.8 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding DUF577 PF04510.7 gi|325968115|ref|YP_004244307.1| - 0.058 13.0 0.0 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF577) dTMP_synthase PF02593.9 gi|325968115|ref|YP_004244307.1| - 0.11 11.8 0.1 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 Thymidylate synthase dCMP_cyt_deam_1 PF00383.17 gi|325968116|ref|YP_004244308.1| - 4.6e-16 58.3 0.0 5.6e-16 58.0 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|325968116|ref|YP_004244308.1| - 2.4e-07 30.8 0.0 3.2e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|325968116|ref|YP_004244308.1| - 0.0024 17.2 1.0 0.8 9.0 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF1610 PF07754.6 gi|325968117|ref|YP_004244309.1| - 2.5e-12 46.6 22.1 2.6e-08 33.7 3.6 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.1 gi|325968117|ref|YP_004244309.1| - 0.00023 20.5 10.5 0.0029 17.0 3.8 3.8 2 2 1 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|325968117|ref|YP_004244309.1| - 0.00051 19.7 11.5 0.018 14.8 4.6 2.3 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|325968117|ref|YP_004244309.1| - 0.00065 18.8 15.8 0.15 11.2 0.2 3.9 4 0 0 4 4 4 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|325968117|ref|YP_004244309.1| - 0.0087 15.8 12.2 0.52 10.1 0.1 4.0 2 1 2 4 4 4 1 PhnA Zinc-Ribbon HypA PF01155.14 gi|325968117|ref|YP_004244309.1| - 0.014 15.0 0.4 0.014 15.0 0.3 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_3 PF07649.7 gi|325968117|ref|YP_004244309.1| - 0.016 15.2 12.3 0.053 13.5 1.7 2.4 2 1 0 2 2 2 0 C1-like domain Zn_Tnp_IS91 PF14319.1 gi|325968117|ref|YP_004244309.1| - 0.022 14.2 0.2 0.022 14.2 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.6 gi|325968117|ref|YP_004244309.1| - 0.023 14.3 11.8 0.035 13.7 0.8 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-RING_5 PF14634.1 gi|325968117|ref|YP_004244309.1| - 0.029 14.0 12.0 1.2 8.8 8.3 2.6 1 1 0 1 1 1 0 zinc-RING finger domain PolC_DP2 PF03833.8 gi|325968117|ref|YP_004244309.1| - 0.036 11.7 5.7 0.042 11.5 3.9 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-FPG_IleRS PF06827.9 gi|325968117|ref|YP_004244309.1| - 0.055 13.1 2.0 0.055 13.1 1.4 3.3 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS C1_1 PF00130.17 gi|325968117|ref|YP_004244309.1| - 0.12 12.1 9.9 1.3 8.8 3.7 2.6 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|325968117|ref|YP_004244309.1| - 0.19 11.5 22.2 3.7e+02 1.0 15.4 3.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-UBP PF02148.14 gi|325968117|ref|YP_004244309.1| - 0.19 11.8 6.3 1.4 9.0 0.5 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-MYND PF01753.13 gi|325968117|ref|YP_004244309.1| - 0.21 11.4 8.2 19 5.2 5.7 2.3 1 1 0 1 1 1 0 MYND finger Desulfoferrod_N PF06397.7 gi|325968117|ref|YP_004244309.1| - 0.26 10.7 12.9 0.75 9.2 0.3 3.6 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain zf-C2H2 PF00096.21 gi|325968117|ref|YP_004244309.1| - 0.26 11.6 16.9 9.4 6.8 0.2 4.2 3 1 1 4 4 4 0 Zinc finger, C2H2 type zf-TFIIB PF13453.1 gi|325968117|ref|YP_004244309.1| - 0.33 10.1 13.5 0.83 8.8 5.5 3.2 2 1 0 2 2 2 0 Transcription factor zinc-finger NOB1_Zn_bind PF08772.6 gi|325968117|ref|YP_004244309.1| - 0.53 10.1 9.0 0.06 13.1 2.6 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-H2C2_2 PF13465.1 gi|325968117|ref|YP_004244309.1| - 0.61 10.4 19.7 0.94 9.8 1.0 4.1 2 2 2 4 4 4 0 Zinc-finger double domain NMD3 PF04981.8 gi|325968117|ref|YP_004244309.1| - 0.74 8.8 7.5 0.9 8.6 5.2 1.0 1 0 0 1 1 1 0 NMD3 family zf-NADH-PPase PF09297.6 gi|325968117|ref|YP_004244309.1| - 1.1 8.8 14.4 0.11 11.9 1.8 3.4 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain NinF PF05810.7 gi|325968117|ref|YP_004244309.1| - 1.1 9.0 5.7 2 8.2 1.5 2.2 1 1 1 2 2 2 0 NinF protein zf-B_box PF00643.19 gi|325968117|ref|YP_004244309.1| - 1.3 8.9 8.6 20 5.1 4.1 2.8 2 1 0 2 2 2 0 B-box zinc finger A2L_zn_ribbon PF08792.5 gi|325968117|ref|YP_004244309.1| - 1.4 8.5 12.8 7.2 6.2 1.6 3.6 2 1 1 3 3 3 0 A2L zinc ribbon domain zf-trcl PF13451.1 gi|325968117|ref|YP_004244309.1| - 1.8 8.2 0.0 1.8 8.2 0.0 3.7 3 1 1 4 4 4 0 Probable zinc-binding domain DUF4428 PF14471.1 gi|325968117|ref|YP_004244309.1| - 2.2 8.0 5.5 2.5 7.9 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Ribosomal_L32p PF01783.18 gi|325968117|ref|YP_004244309.1| - 2.4 8.3 10.8 0.16 12.1 1.2 2.9 1 1 1 2 2 2 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.7 gi|325968117|ref|YP_004244309.1| - 3.1 7.1 16.0 2.2 7.6 3.4 3.0 2 1 1 3 3 3 0 TFIIB zinc-binding zf-CHY PF05495.7 gi|325968117|ref|YP_004244309.1| - 3.2 7.9 8.4 12 6.1 5.8 1.9 1 1 0 1 1 1 0 CHY zinc finger zf-BED PF02892.10 gi|325968117|ref|YP_004244309.1| - 3.4 7.4 8.5 1.5 8.6 1.8 2.5 2 1 1 3 3 3 0 BED zinc finger Ribosomal_L37ae PF01780.14 gi|325968117|ref|YP_004244309.1| - 4.5 7.1 9.1 51 3.8 5.5 2.7 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-AN1 PF01428.11 gi|325968117|ref|YP_004244309.1| - 5.7 6.9 11.6 9 6.2 2.1 2.7 2 1 1 3 3 3 0 AN1-like Zinc finger FYVE PF01363.16 gi|325968117|ref|YP_004244309.1| - 5.9 6.8 10.4 27 4.7 7.2 2.0 1 1 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|325968117|ref|YP_004244309.1| - 6.3 7.3 16.9 5.3 7.6 0.4 4.1 3 1 1 4 4 4 0 C2H2-type zinc finger Sgf11 PF08209.6 gi|325968117|ref|YP_004244309.1| - 7.5 5.9 17.7 2.3 7.6 0.3 4.0 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_5 PF13719.1 gi|325968117|ref|YP_004244309.1| - 8.6 6.0 12.5 16 5.2 0.1 3.9 4 0 0 4 4 4 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|325968117|ref|YP_004244309.1| - 8.8 6.6 12.0 16 5.8 8.3 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-HIT PF04438.11 gi|325968117|ref|YP_004244309.1| - 9.6 5.9 17.7 8.7 6.0 3.4 3.2 1 1 2 3 3 3 0 HIT zinc finger DUF95 PF01944.12 gi|325968119|ref|YP_004244311.1| - 7.4e-15 55.0 23.9 2.4e-14 53.3 16.5 1.6 1 1 0 1 1 1 1 Integral membrane protein DUF95 Multi_Drug_Res PF00893.14 gi|325968119|ref|YP_004244311.1| - 0.11 12.9 6.3 0.19 12.1 1.8 2.5 2 0 0 2 2 2 0 Small Multidrug Resistance protein Pox_A9 PF04835.7 gi|325968119|ref|YP_004244311.1| - 0.27 11.1 0.2 0.27 11.1 0.2 3.0 3 1 0 3 3 3 0 A9 protein conserved region ATP-synt_D PF01813.12 gi|325968120|ref|YP_004244312.1| - 9.3e-33 113.4 1.0 1e-32 113.2 0.7 1.0 1 0 0 1 1 1 1 ATP synthase subunit D MMR_HSR1 PF01926.18 gi|325968121|ref|YP_004244313.1| - 1.6e-20 73.1 0.1 1.2e-15 57.4 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|325968121|ref|YP_004244313.1| - 6.2e-10 38.5 0.3 3.5e-06 26.3 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|325968121|ref|YP_004244313.1| - 1.8e-08 34.0 0.0 1.2e-06 28.1 0.0 2.9 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|325968121|ref|YP_004244313.1| - 1.4e-07 31.5 0.3 0.016 14.9 0.0 3.1 2 1 1 3 3 3 2 Dynamin family Arf PF00025.16 gi|325968121|ref|YP_004244313.1| - 5.6e-05 22.4 0.1 0.015 14.5 0.0 2.3 1 1 0 2 2 2 2 ADP-ribosylation factor family DUF258 PF03193.11 gi|325968121|ref|YP_004244313.1| - 0.00016 20.9 0.0 0.00037 19.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|325968121|ref|YP_004244313.1| - 0.00042 20.7 0.0 0.014 15.9 0.0 2.3 2 0 0 2 2 2 1 Miro-like protein AIG1 PF04548.11 gi|325968121|ref|YP_004244313.1| - 0.0014 17.8 0.0 0.017 14.2 0.0 2.1 2 0 0 2 2 2 1 AIG1 family cobW PF02492.14 gi|325968121|ref|YP_004244313.1| - 0.0024 17.3 0.0 0.031 13.7 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|325968121|ref|YP_004244313.1| - 0.031 14.5 0.2 0.15 12.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|325968121|ref|YP_004244313.1| - 0.042 14.6 0.1 0.26 12.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|325968121|ref|YP_004244313.1| - 0.052 12.3 0.1 0.25 10.0 0.0 2.0 1 1 1 2 2 2 0 ArgK protein MobB PF03205.9 gi|325968121|ref|YP_004244313.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|325968121|ref|YP_004244313.1| - 0.13 11.9 0.2 6 6.5 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.1 gi|325968121|ref|YP_004244313.1| - 0.14 12.3 0.0 13 5.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|325968121|ref|YP_004244313.1| - 0.15 11.5 0.1 9.6 5.6 0.0 2.8 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein DUF4428 PF14471.1 gi|325968124|ref|YP_004244316.1| - 0.23 11.2 1.8 3.4 7.4 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) Mrr_cat PF04471.7 gi|325968125|ref|YP_004244317.1| - 0.0022 17.7 0.0 0.0042 16.8 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Hjc PF01870.13 gi|325968125|ref|YP_004244317.1| - 0.003 17.1 0.0 0.0053 16.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|325968125|ref|YP_004244317.1| - 0.0044 17.2 0.0 0.0076 16.5 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain Aldedh PF00171.17 gi|325968126|ref|YP_004244318.1| - 1.2e-133 445.8 0.0 1.4e-133 445.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|325968126|ref|YP_004244318.1| - 0.12 11.0 0.0 0.2 10.3 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) CBS PF00571.23 gi|325968127|ref|YP_004244319.1| - 2.1e-49 165.0 9.7 9.4e-15 54.1 0.1 4.1 4 0 0 4 4 4 4 CBS domain Fumerase_C PF05683.7 gi|325968128|ref|YP_004244320.1| - 3.4e-59 199.4 0.2 4.2e-59 199.1 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.9 gi|325968129|ref|YP_004244321.1| - 2e-84 282.8 0.0 2.4e-84 282.6 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) H-K_ATPase_N PF09040.6 gi|325968129|ref|YP_004244321.1| - 0.11 12.5 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain TauE PF01925.14 gi|325968130|ref|YP_004244322.1| - 5.9e-27 94.6 27.5 7.3e-27 94.3 19.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE ADH_N PF08240.7 gi|325968131|ref|YP_004244323.1| - 7.7e-29 99.6 1.0 1.7e-28 98.5 0.3 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|325968131|ref|YP_004244323.1| - 3e-23 81.7 0.3 5.3e-23 80.9 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|325968131|ref|YP_004244323.1| - 3.2e-12 47.4 0.4 9.7e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|325968131|ref|YP_004244323.1| - 5e-05 23.3 0.8 5e-05 23.3 0.6 1.6 1 1 0 2 2 2 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|325968131|ref|YP_004244323.1| - 0.00016 21.3 0.7 0.00027 20.5 0.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.8 gi|325968131|ref|YP_004244323.1| - 0.0021 17.3 0.8 0.0042 16.3 0.4 1.6 2 0 0 2 2 2 1 NmrA-like family ELFV_dehydrog PF00208.16 gi|325968131|ref|YP_004244323.1| - 0.0053 16.3 0.2 0.008 15.7 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Semialdhyde_dh PF01118.19 gi|325968131|ref|YP_004244323.1| - 0.014 15.6 0.2 4.1 7.7 0.1 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|325968131|ref|YP_004244323.1| - 0.026 14.4 0.1 1.5 8.7 0.1 2.4 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.16 gi|325968131|ref|YP_004244323.1| - 0.091 12.1 0.1 0.13 11.6 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF2443 PF10398.4 gi|325968131|ref|YP_004244323.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2443) Ribosomal_L19e PF01280.15 gi|325968132|ref|YP_004244324.1| - 6.9e-46 155.6 6.8 7.6e-46 155.5 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.2 gi|325968132|ref|YP_004244324.1| - 4.9 7.4 9.3 13 6.1 2.0 3.3 2 2 1 3 3 3 0 Helix-turn-helix domain Ribosomal_L18p PF00861.17 gi|325968133|ref|YP_004244325.1| - 5.3e-36 123.4 0.1 8.6e-36 122.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|325968133|ref|YP_004244325.1| - 2.1e-12 47.4 1.0 3.8e-12 46.6 0.7 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region TrkA_C PF02080.16 gi|325968133|ref|YP_004244325.1| - 0.064 12.8 0.2 1.3 8.6 0.1 2.3 2 0 0 2 2 2 0 TrkA-C domain Sugar_tr PF00083.19 gi|325968134|ref|YP_004244326.1| - 6e-21 74.5 35.8 2.5e-20 72.5 24.8 1.9 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325968134|ref|YP_004244326.1| - 7.4e-19 67.6 45.3 7.4e-19 67.6 31.4 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF106 PF01956.11 gi|325968134|ref|YP_004244326.1| - 0.28 10.6 0.1 0.28 10.6 0.1 3.1 3 2 0 3 3 3 0 Integral membrane protein DUF106 EamA PF00892.15 gi|325968135|ref|YP_004244327.1| - 0.0045 17.0 14.4 0.0045 17.0 10.0 2.5 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|325968135|ref|YP_004244327.1| - 7.6 6.7 19.7 0.035 14.3 2.5 3.2 3 1 1 4 4 4 0 Multidrug resistance efflux transporter tRNA-synt_2 PF00152.15 gi|325968136|ref|YP_004244328.1| - 1.2e-84 283.9 0.3 1.8e-84 283.4 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|325968136|ref|YP_004244328.1| - 1.5e-09 37.5 0.5 2.9e-09 36.6 0.3 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|325968136|ref|YP_004244328.1| - 0.0043 16.2 0.3 0.29 10.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) B12-binding_2 PF02607.12 gi|325968136|ref|YP_004244328.1| - 0.039 13.9 0.1 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain SseB_C PF14581.1 gi|325968136|ref|YP_004244328.1| - 0.1 12.4 0.1 0.21 11.4 0.1 1.5 1 0 0 1 1 1 0 SseB protein C-terminal domain KH_5 PF13184.1 gi|325968137|ref|YP_004244329.1| - 2.6e-07 30.3 1.1 9.8e-07 28.4 0.6 2.1 2 0 0 2 2 2 1 NusA-like KH domain Pox_VLTF3 PF04947.9 gi|325968137|ref|YP_004244329.1| - 0.023 14.2 0.2 0.037 13.5 0.1 1.2 1 0 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like Arg_tRNA_synt_N PF03485.11 gi|325968137|ref|YP_004244329.1| - 0.09 13.3 0.0 0.23 12.0 0.0 1.7 2 1 0 2 2 2 0 Arginyl tRNA synthetase N terminal domain ABC_tran PF00005.22 gi|325968138|ref|YP_004244330.1| - 1.8e-25 89.7 0.0 3.9e-25 88.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968138|ref|YP_004244330.1| - 1e-16 61.7 0.2 1.6e-11 44.6 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|325968138|ref|YP_004244330.1| - 0.00046 19.6 0.1 0.0009 18.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|325968138|ref|YP_004244330.1| - 0.0011 19.1 0.0 0.0094 16.1 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF4162 PF13732.1 gi|325968138|ref|YP_004244330.1| - 0.0031 17.9 0.1 0.0057 17.1 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_5 PF07728.9 gi|325968138|ref|YP_004244330.1| - 0.0043 16.7 0.0 0.012 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|325968138|ref|YP_004244330.1| - 0.0061 16.0 0.1 0.0095 15.4 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|325968138|ref|YP_004244330.1| - 0.0064 15.9 0.0 3.2 7.0 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_17 PF13207.1 gi|325968138|ref|YP_004244330.1| - 0.0081 16.9 0.8 0.027 15.2 0.4 2.2 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|325968138|ref|YP_004244330.1| - 0.013 14.2 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|325968138|ref|YP_004244330.1| - 0.019 14.0 0.1 2.9 6.9 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin MukB PF04310.7 gi|325968138|ref|YP_004244330.1| - 0.049 12.9 0.0 0.094 12.0 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal AAA_14 PF13173.1 gi|325968138|ref|YP_004244330.1| - 0.055 13.3 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|325968138|ref|YP_004244330.1| - 0.059 13.6 0.3 0.28 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|325968138|ref|YP_004244330.1| - 0.084 13.1 0.6 0.18 12.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|325968138|ref|YP_004244330.1| - 0.1 12.5 0.0 0.26 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|325968138|ref|YP_004244330.1| - 0.12 11.5 0.0 15 4.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|325968138|ref|YP_004244330.1| - 0.13 12.0 0.1 0.34 10.6 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|325968138|ref|YP_004244330.1| - 0.15 11.5 0.1 1.2 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|325968139|ref|YP_004244331.1| - 1.2e-12 47.4 25.7 1.2e-12 47.4 17.8 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|325968139|ref|YP_004244331.1| - 8.2e-05 21.7 30.9 8.2e-05 21.7 21.4 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Peptidase_MA_2 PF13485.1 gi|325968141|ref|YP_004244333.1| - 0.006 16.6 0.6 0.025 14.6 0.1 2.1 2 0 0 2 2 2 1 Peptidase MA superfamily Fer4_6 PF12837.2 gi|325968142|ref|YP_004244334.1| - 2.5e-07 30.2 13.0 0.00047 19.9 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|325968142|ref|YP_004244334.1| - 2.1e-05 24.1 12.6 0.00016 21.4 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|325968142|ref|YP_004244334.1| - 3e-05 23.4 14.8 0.00016 21.1 3.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325968142|ref|YP_004244334.1| - 4.6e-05 23.1 12.0 0.00016 21.3 8.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968142|ref|YP_004244334.1| - 0.00045 20.5 8.3 0.023 15.0 7.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968142|ref|YP_004244334.1| - 0.015 15.5 11.2 0.053 13.7 7.8 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|325968142|ref|YP_004244334.1| - 0.13 12.1 13.3 1.2 9.0 9.4 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968142|ref|YP_004244334.1| - 0.56 10.6 6.9 3.3 8.1 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325968142|ref|YP_004244334.1| - 0.99 9.9 13.1 0.95 9.9 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|325968142|ref|YP_004244334.1| - 1.6 8.7 11.1 1.9 8.6 1.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|325968142|ref|YP_004244334.1| - 2.4 8.9 15.9 0.4 11.3 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|325968142|ref|YP_004244334.1| - 5.3 7.8 11.2 2.5 8.9 1.5 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain MFS_1 PF07690.11 gi|325968144|ref|YP_004244336.1| - 4.2e-28 98.0 48.5 9.7e-18 63.9 19.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|325968144|ref|YP_004244336.1| - 3.3e-07 28.8 19.0 3.3e-07 28.8 13.1 1.4 1 1 1 2 2 2 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|325968144|ref|YP_004244336.1| - 1.3e-06 27.2 5.9 1.3e-06 27.2 4.1 2.9 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|325968144|ref|YP_004244336.1| - 0.00042 20.0 1.5 0.00042 20.0 1.0 4.0 4 2 1 6 6 6 1 MFS_1 like family DUF2583 PF10762.4 gi|325968144|ref|YP_004244336.1| - 2.6 8.2 7.0 2.2 8.4 0.1 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) GHMP_kinases_N PF00288.21 gi|325968145|ref|YP_004244337.1| - 4.7e-18 65.0 0.5 2.7e-17 62.5 0.0 2.4 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|325968145|ref|YP_004244337.1| - 6.2e-14 51.9 1.8 1e-13 51.2 0.3 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|325968145|ref|YP_004244337.1| - 0.00046 19.4 1.4 0.00046 19.3 0.1 1.7 2 0 0 2 2 2 1 Galactokinase galactose-binding signature Nif11 PF07862.6 gi|325968145|ref|YP_004244337.1| - 0.061 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Nitrogen fixation protein of unknown function T2SE PF00437.15 gi|325968146|ref|YP_004244338.1| - 8.3e-13 47.8 0.0 1.4e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|325968146|ref|YP_004244338.1| - 1.2e-07 32.5 0.0 3.2e-06 27.9 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|325968146|ref|YP_004244338.1| - 2.3e-05 24.7 0.0 8.5e-05 22.8 0.0 2.1 3 0 0 3 3 1 1 AAA domain AAA_19 PF13245.1 gi|325968146|ref|YP_004244338.1| - 0.00035 20.2 0.0 0.0008 19.1 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|325968146|ref|YP_004244338.1| - 0.00051 19.9 0.0 0.0078 16.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|325968146|ref|YP_004244338.1| - 0.00059 19.3 0.0 0.00093 18.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|325968146|ref|YP_004244338.1| - 0.00066 19.8 0.0 0.0014 18.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KH_1 PF00013.24 gi|325968146|ref|YP_004244338.1| - 0.0009 18.8 0.4 0.0098 15.5 0.0 2.8 2 1 0 2 2 2 1 KH domain AAA_28 PF13521.1 gi|325968146|ref|YP_004244338.1| - 0.0011 18.9 0.0 0.0026 17.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|325968146|ref|YP_004244338.1| - 0.0017 17.8 0.1 0.004 16.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|325968146|ref|YP_004244338.1| - 0.0019 17.8 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|325968146|ref|YP_004244338.1| - 0.0027 17.4 0.0 0.0075 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|325968146|ref|YP_004244338.1| - 0.0028 16.7 0.1 0.0053 15.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|325968146|ref|YP_004244338.1| - 0.0037 17.3 0.0 0.015 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|325968146|ref|YP_004244338.1| - 0.0042 16.4 0.0 0.015 14.6 0.0 2.0 2 1 0 2 2 2 1 Thymidylate kinase AAA_14 PF13173.1 gi|325968146|ref|YP_004244338.1| - 0.0068 16.3 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|325968146|ref|YP_004244338.1| - 0.0082 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|325968146|ref|YP_004244338.1| - 0.0089 15.1 0.0 0.017 14.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|325968146|ref|YP_004244338.1| - 0.0092 15.9 0.0 0.041 13.8 0.0 2.1 2 1 1 3 3 3 1 AAA ATPase domain Sigma54_activ_2 PF14532.1 gi|325968146|ref|YP_004244338.1| - 0.0095 15.9 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain UPF0079 PF02367.12 gi|325968146|ref|YP_004244338.1| - 0.01 15.4 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|325968146|ref|YP_004244338.1| - 0.015 15.4 0.0 0.083 13.0 0.0 2.1 2 0 0 2 2 2 0 RNA helicase KTI12 PF08433.5 gi|325968146|ref|YP_004244338.1| - 0.018 14.2 0.0 0.06 12.5 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|325968146|ref|YP_004244338.1| - 0.021 14.2 0.0 0.039 13.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_tran PF00005.22 gi|325968146|ref|YP_004244338.1| - 0.021 15.0 0.0 0.06 13.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter Rad17 PF03215.10 gi|325968146|ref|YP_004244338.1| - 0.027 13.1 0.0 0.038 12.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|325968146|ref|YP_004244338.1| - 0.031 13.9 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|325968146|ref|YP_004244338.1| - 0.034 13.6 0.0 0.07 12.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.1 gi|325968146|ref|YP_004244338.1| - 0.044 13.3 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|325968146|ref|YP_004244338.1| - 0.045 13.1 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain NTPase_1 PF03266.10 gi|325968146|ref|YP_004244338.1| - 0.045 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 NTPase AAA_23 PF13476.1 gi|325968146|ref|YP_004244338.1| - 0.051 13.8 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|325968146|ref|YP_004244338.1| - 0.091 11.9 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|325968146|ref|YP_004244338.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArgK PF03308.11 gi|325968146|ref|YP_004244338.1| - 0.1 11.3 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein AAA_24 PF13479.1 gi|325968146|ref|YP_004244338.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|325968146|ref|YP_004244338.1| - 0.11 12.1 0.0 0.48 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|325968147|ref|YP_004244339.1| - 4.9e-60 202.4 0.1 5.9e-60 202.2 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|325968147|ref|YP_004244339.1| - 1.1e-07 31.4 0.0 1.7e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|325968147|ref|YP_004244339.1| - 0.00051 18.4 0.4 0.042 12.1 0.1 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_22 PF13401.1 gi|325968147|ref|YP_004244339.1| - 0.0065 16.6 0.0 0.011 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|325968147|ref|YP_004244339.1| - 0.013 14.4 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|325968147|ref|YP_004244339.1| - 0.043 12.6 0.0 0.074 11.9 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Caleosin PF05042.8 gi|325968147|ref|YP_004244339.1| - 0.072 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Caleosin related protein SRP54 PF00448.17 gi|325968148|ref|YP_004244340.1| - 3.1e-64 216.0 0.1 4.7e-64 215.4 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|325968148|ref|YP_004244340.1| - 1.3e-26 92.8 4.3 4e-26 91.2 1.8 2.4 1 1 1 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|325968148|ref|YP_004244340.1| - 9e-10 38.5 0.3 9e-10 38.5 0.2 3.0 4 0 0 4 4 3 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.1 gi|325968148|ref|YP_004244340.1| - 2e-08 34.4 0.9 1.1e-07 32.0 0.0 2.5 3 1 0 3 3 3 1 AAA domain CbiA PF01656.18 gi|325968148|ref|YP_004244340.1| - 7.8e-08 31.9 0.7 2.1e-07 30.5 0.0 2.1 1 1 1 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|325968148|ref|YP_004244340.1| - 1.2e-05 26.1 0.1 3.8e-05 24.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|325968148|ref|YP_004244340.1| - 1.3e-05 24.6 0.1 6.8e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|325968148|ref|YP_004244340.1| - 2e-05 24.1 0.5 8e-05 22.1 0.1 2.2 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|325968148|ref|YP_004244340.1| - 0.0005 19.7 0.1 0.0017 18.0 0.0 2.0 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|325968148|ref|YP_004244340.1| - 0.0013 18.2 0.1 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain MMR_HSR1 PF01926.18 gi|325968148|ref|YP_004244340.1| - 0.0013 18.6 0.0 0.0051 16.7 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase G-alpha PF00503.15 gi|325968148|ref|YP_004244340.1| - 0.0021 16.7 0.1 0.0054 15.4 0.0 1.6 1 1 0 1 1 1 1 G-protein alpha subunit AAA_31 PF13614.1 gi|325968148|ref|YP_004244340.1| - 0.006 16.5 0.0 0.33 10.8 0.0 2.6 1 1 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|325968148|ref|YP_004244340.1| - 0.007 15.8 0.2 0.4 10.1 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_33 PF13671.1 gi|325968148|ref|YP_004244340.1| - 0.0082 16.0 0.0 0.023 14.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|325968148|ref|YP_004244340.1| - 0.014 15.7 0.5 0.2 11.9 0.0 2.5 2 1 0 2 2 2 0 ABC transporter AAA_5 PF07728.9 gi|325968148|ref|YP_004244340.1| - 0.022 14.5 0.0 0.072 12.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|325968148|ref|YP_004244340.1| - 0.025 14.1 0.1 0.098 12.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|325968148|ref|YP_004244340.1| - 0.031 13.3 0.0 1.6 7.7 0.0 2.3 1 1 0 1 1 1 0 ATPase MipZ Zeta_toxin PF06414.7 gi|325968148|ref|YP_004244340.1| - 0.033 13.2 0.1 0.08 12.0 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin Thymidylate_kin PF02223.12 gi|325968148|ref|YP_004244340.1| - 0.036 13.4 2.0 0.083 12.2 0.1 2.6 3 0 0 3 3 3 0 Thymidylate kinase AAA_14 PF13173.1 gi|325968148|ref|YP_004244340.1| - 0.038 13.8 1.3 0.11 12.3 0.2 2.4 2 1 0 2 2 2 0 AAA domain SLT_2 PF13406.1 gi|325968148|ref|YP_004244340.1| - 0.067 12.0 0.0 0.3 9.9 0.0 2.0 1 1 1 2 2 2 0 Transglycosylase SLT domain APS_kinase PF01583.15 gi|325968148|ref|YP_004244340.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|325968148|ref|YP_004244340.1| - 0.082 12.6 0.0 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_28 PF13521.1 gi|325968148|ref|YP_004244340.1| - 0.088 12.7 0.1 0.21 11.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|325968148|ref|YP_004244340.1| - 0.12 12.6 0.9 0.64 10.2 0.1 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|325968148|ref|YP_004244340.1| - 0.12 12.6 1.8 0.2 11.9 0.2 2.2 2 1 0 2 2 1 0 AAA domain SinI PF08671.5 gi|325968148|ref|YP_004244340.1| - 0.2 11.1 2.1 22 4.6 0.0 3.5 3 0 0 3 3 3 0 Anti-repressor SinI Phosphodiest PF01663.17 gi|325968149|ref|YP_004244341.1| - 3e-23 82.7 2.5 3.1e-21 76.0 1.7 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|325968149|ref|YP_004244341.1| - 4.4e-05 23.2 0.5 0.061 12.9 0.1 2.3 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.13 gi|325968149|ref|YP_004244341.1| - 8.4e-05 22.0 0.3 8.4e-05 22.0 0.2 1.5 2 0 0 2 2 2 1 Metalloenzyme superfamily Sulfatase PF00884.18 gi|325968149|ref|YP_004244341.1| - 0.031 13.4 0.1 1.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Sulfatase Trypsin_2 PF13365.1 gi|325968150|ref|YP_004244342.1| - 1.7e-20 73.1 0.1 2.6e-20 72.6 0.1 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|325968150|ref|YP_004244342.1| - 4.9e-17 62.2 0.0 8e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|325968150|ref|YP_004244342.1| - 8.1e-11 41.6 0.0 1.9e-10 40.4 0.0 1.7 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|325968150|ref|YP_004244342.1| - 4.4e-08 33.1 0.2 1.4e-07 31.6 0.0 1.9 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S32 PF05579.8 gi|325968150|ref|YP_004244342.1| - 0.0077 15.2 0.4 0.23 10.4 0.1 2.2 2 0 0 2 2 2 1 Equine arteritis virus serine endopeptidase S32 Tricorn_PDZ PF14685.1 gi|325968150|ref|YP_004244342.1| - 0.044 13.5 0.0 0.13 12.0 0.0 1.8 1 0 0 1 1 1 0 Tricorn protease PDZ domain Peptidase_S46 PF10459.4 gi|325968150|ref|YP_004244342.1| - 0.13 10.6 0.4 0.21 9.9 0.3 1.2 1 0 0 1 1 1 0 Peptidase S46 NMD3 PF04981.8 gi|325968151|ref|YP_004244343.1| - 3e-40 137.7 0.4 4.4e-40 137.2 0.3 1.2 1 0 0 1 1 1 1 NMD3 family zf-TFIIB PF13453.1 gi|325968151|ref|YP_004244343.1| - 0.0074 15.4 1.5 0.39 9.9 0.1 2.6 2 0 0 2 2 2 1 Transcription factor zinc-finger DZR PF12773.2 gi|325968151|ref|YP_004244343.1| - 0.038 13.8 4.1 1.7 8.5 1.2 2.9 2 1 0 2 2 2 0 Double zinc ribbon Ribosomal_L37ae PF01780.14 gi|325968151|ref|YP_004244343.1| - 0.12 12.2 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.1 gi|325968151|ref|YP_004244343.1| - 0.22 10.7 0.0 0.22 10.7 0.0 3.0 4 0 0 4 4 4 0 zinc-ribbon domain DUF164 PF02591.10 gi|325968151|ref|YP_004244343.1| - 0.41 10.5 5.6 0.17 11.7 1.2 2.5 2 1 0 2 2 2 0 Putative zinc ribbon domain Prok-RING_1 PF14446.1 gi|325968151|ref|YP_004244343.1| - 1.7 8.4 7.9 10 5.9 0.0 3.4 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 zf-Sec23_Sec24 PF04810.10 gi|325968151|ref|YP_004244343.1| - 1.7 8.2 5.9 3.6 7.2 0.2 3.1 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger OrfB_Zn_ribbon PF07282.6 gi|325968151|ref|YP_004244343.1| - 2 8.1 4.6 21 4.8 0.3 3.0 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zf-RING_4 PF14570.1 gi|325968151|ref|YP_004244343.1| - 4.2 7.0 7.3 27 4.4 0.8 3.0 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-NADH-PPase PF09297.6 gi|325968151|ref|YP_004244343.1| - 9.9 5.7 9.7 4.3 6.9 0.0 3.2 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain eIF-1a PF01176.14 gi|325968152|ref|YP_004244344.1| - 3.1e-22 77.7 0.1 4e-22 77.3 0.0 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 ETF PF01012.16 gi|325968153|ref|YP_004244345.1| - 1.1e-39 135.8 0.0 1.4e-39 135.4 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|325968154|ref|YP_004244346.1| - 1.8e-30 105.8 0.0 2.7e-30 105.2 0.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|325968154|ref|YP_004244346.1| - 7.9e-17 60.6 0.0 1.3e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain CCG PF02754.11 gi|325968155|ref|YP_004244347.1| - 6.6e-28 96.5 2.8 1.2e-17 63.6 0.0 2.9 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|325968155|ref|YP_004244347.1| - 1.3e-09 37.9 6.0 1.3e-09 37.9 4.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968155|ref|YP_004244347.1| - 2.3e-07 31.0 9.5 5.5e-07 29.8 5.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968155|ref|YP_004244347.1| - 1.5e-06 27.9 7.2 1.5e-06 27.9 5.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968155|ref|YP_004244347.1| - 2.4e-05 24.6 7.4 2.4e-05 24.6 5.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968155|ref|YP_004244347.1| - 0.00034 20.8 13.5 0.0045 17.2 8.1 3.0 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325968155|ref|YP_004244347.1| - 0.0015 18.3 14.2 0.075 12.9 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|325968155|ref|YP_004244347.1| - 0.0016 18.8 15.6 0.0019 18.6 0.9 3.3 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968155|ref|YP_004244347.1| - 0.0019 17.7 16.3 0.036 13.6 1.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325968155|ref|YP_004244347.1| - 0.066 13.1 1.0 0.066 13.1 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968155|ref|YP_004244347.1| - 0.081 12.7 14.3 0.08 12.8 7.9 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|325968155|ref|YP_004244347.1| - 0.38 11.4 16.3 2.8 8.7 3.8 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|325968155|ref|YP_004244347.1| - 0.87 10.0 9.6 1.7 9.1 0.8 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|325968155|ref|YP_004244347.1| - 2.4 7.8 7.7 0.71 9.5 0.5 2.4 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|325968155|ref|YP_004244347.1| - 2.7 8.7 17.4 10 6.9 10.1 2.8 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain FlpD PF02662.11 gi|325968156|ref|YP_004244348.1| - 4e-36 123.4 0.9 1.5e-35 121.6 0.1 2.4 3 0 0 3 3 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.9 gi|325968156|ref|YP_004244348.1| - 7.9e-21 74.8 5.7 1.4e-08 34.8 2.4 4.5 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|325968156|ref|YP_004244348.1| - 2.9e-20 70.9 34.4 3.5e-09 35.8 1.0 4.7 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|325968156|ref|YP_004244348.1| - 2.2e-15 56.7 28.2 2.4e-09 37.4 8.4 4.5 4 1 1 5 5 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968156|ref|YP_004244348.1| - 4e-15 55.3 20.3 1.3e-07 31.3 7.4 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain NAD_binding_8 PF13450.1 gi|325968156|ref|YP_004244348.1| - 2.1e-13 50.0 5.4 8e-07 29.0 0.0 3.7 4 0 0 4 4 3 2 NAD(P)-binding Rossmann-like domain Fer4_17 PF13534.1 gi|325968156|ref|YP_004244348.1| - 2.2e-13 50.3 13.1 0.00061 20.0 2.1 4.9 4 0 0 4 4 4 3 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|325968156|ref|YP_004244348.1| - 2.5e-13 49.9 6.6 6.5e-07 28.7 0.3 2.6 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|325968156|ref|YP_004244348.1| - 2.6e-12 46.9 9.6 7.9e-07 29.3 0.1 4.6 4 1 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|325968156|ref|YP_004244348.1| - 2.4e-11 43.1 12.3 1.4e-05 24.1 0.5 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase Fer4_6 PF12837.2 gi|325968156|ref|YP_004244348.1| - 3.4e-11 42.5 34.3 2.7e-05 23.8 1.0 5.0 4 0 0 4 4 4 3 4Fe-4S binding domain Pyr_redox_3 PF13738.1 gi|325968156|ref|YP_004244348.1| - 7.6e-11 42.4 2.6 0.0098 15.9 0.4 3.6 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|325968156|ref|YP_004244348.1| - 1.2e-10 40.7 11.6 2.3e-05 23.4 0.8 3.4 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.9 gi|325968156|ref|YP_004244348.1| - 1.3e-10 40.3 12.1 0.00042 18.8 1.0 3.4 2 1 1 3 3 3 3 HI0933-like protein GIDA PF01134.17 gi|325968156|ref|YP_004244348.1| - 2.6e-10 39.7 14.1 4.1e-06 25.9 0.1 4.8 5 0 0 5 5 5 2 Glucose inhibited division protein A Fer4_21 PF14697.1 gi|325968156|ref|YP_004244348.1| - 9.1e-10 38.2 25.7 1e-07 31.6 4.5 4.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325968156|ref|YP_004244348.1| - 1.2e-09 38.0 20.9 0.00041 20.3 0.1 4.1 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325968156|ref|YP_004244348.1| - 3.1e-09 37.4 29.6 0.0034 18.0 0.9 4.7 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain FAD_binding_3 PF01494.14 gi|325968156|ref|YP_004244348.1| - 1.5e-08 34.1 5.1 0.00013 21.1 0.2 2.9 3 0 0 3 3 3 2 FAD binding domain Fer4_2 PF12797.2 gi|325968156|ref|YP_004244348.1| - 1.6e-08 33.9 37.8 0.00011 21.9 1.3 5.3 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|325968156|ref|YP_004244348.1| - 2.3e-07 30.9 11.9 2.3e-07 30.9 8.2 4.5 4 1 1 5 5 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325968156|ref|YP_004244348.1| - 2.6e-07 30.4 35.1 0.0087 16.3 2.0 5.3 4 0 0 4 4 4 3 4Fe-4S binding domain Thi4 PF01946.12 gi|325968156|ref|YP_004244348.1| - 1.7e-06 27.2 2.1 0.014 14.5 0.1 2.5 2 0 0 2 2 2 2 Thi4 family Amino_oxidase PF01593.19 gi|325968156|ref|YP_004244348.1| - 6.6e-06 25.4 7.6 0.012 14.6 0.0 3.2 3 1 1 4 4 4 2 Flavin containing amine oxidoreductase Fer4_18 PF13746.1 gi|325968156|ref|YP_004244348.1| - 1.1e-05 25.7 23.2 0.014 15.7 0.6 4.9 4 0 0 4 4 4 3 4Fe-4S dicluster domain NAD_binding_7 PF13241.1 gi|325968156|ref|YP_004244348.1| - 0.00038 20.6 0.5 7 6.9 0.0 4.2 4 0 0 4 4 3 0 Putative NAD(P)-binding CPSase_L_chain PF00289.17 gi|325968156|ref|YP_004244348.1| - 0.00044 20.3 0.1 1.2 9.3 0.0 2.8 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain AlaDh_PNT_C PF01262.16 gi|325968156|ref|YP_004244348.1| - 0.0015 18.0 0.2 0.13 11.8 0.0 2.8 3 0 0 3 3 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|325968156|ref|YP_004244348.1| - 0.0019 17.8 1.8 0.28 10.8 0.1 2.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_15 PF13459.1 gi|325968156|ref|YP_004244348.1| - 0.0031 18.0 22.1 0.22 12.1 0.4 5.4 5 0 0 5 5 4 2 4Fe-4S single cluster domain NAD_binding_9 PF13454.1 gi|325968156|ref|YP_004244348.1| - 0.015 15.0 5.8 3.4 7.4 0.0 3.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fer4_3 PF12798.2 gi|325968156|ref|YP_004244348.1| - 0.02 15.4 4.8 0.02 15.4 3.4 5.8 5 0 0 5 5 4 0 4Fe-4S binding domain Lycopene_cycl PF05834.7 gi|325968156|ref|YP_004244348.1| - 0.029 13.3 7.7 0.75 8.6 0.3 2.7 2 1 1 3 3 3 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|325968156|ref|YP_004244348.1| - 0.047 12.3 6.2 0.026 13.1 0.5 2.2 2 0 0 2 2 2 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.9 gi|325968156|ref|YP_004244348.1| - 0.056 12.8 1.0 18 4.6 0.1 3.4 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K_oxygenase PF13434.1 gi|325968156|ref|YP_004244348.1| - 0.057 12.3 0.1 0.64 8.8 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) ThiF PF00899.16 gi|325968156|ref|YP_004244348.1| - 0.09 12.5 7.9 0.23 11.3 0.7 3.0 3 0 0 3 3 2 0 ThiF family TrkA_N PF02254.13 gi|325968156|ref|YP_004244348.1| - 0.2 11.6 2.2 7.2 6.6 0.1 3.3 4 0 0 4 4 2 0 TrkA-N domain POR PF01558.13 gi|325968157|ref|YP_004244349.1| - 4.8e-31 107.9 0.1 5.6e-31 107.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.16 gi|325968158|ref|YP_004244350.1| - 1.9e-34 118.4 0.2 2.7e-34 117.9 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|325968159|ref|YP_004244351.1| - 5.7e-67 225.5 0.0 7.5e-67 225.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|325968159|ref|YP_004244351.1| - 0.00034 20.5 0.0 0.00067 19.5 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain RIO1 PF01163.17 gi|325968160|ref|YP_004244352.1| - 3.8e-52 176.3 0.0 5.9e-52 175.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|325968160|ref|YP_004244352.1| - 0.023 13.8 0.0 0.16 11.1 0.0 2.0 2 0 0 2 2 2 0 Protein kinase domain DUF3989 PF13150.1 gi|325968163|ref|YP_004244355.1| - 0.35 10.3 2.2 0.36 10.3 0.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3989) Topoisom_bac PF01131.15 gi|325968164|ref|YP_004244356.1| - 5.7e-95 318.5 0.1 8.1e-95 317.9 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|325968164|ref|YP_004244356.1| - 3.4e-18 65.4 0.0 3e-17 62.4 0.0 2.7 3 0 0 3 3 3 1 Toprim domain DEAD PF00270.24 gi|325968164|ref|YP_004244356.1| - 1.5e-13 50.6 0.0 5.2e-13 48.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|325968164|ref|YP_004244356.1| - 4.2e-06 26.7 0.0 9.9e-06 25.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|325968164|ref|YP_004244356.1| - 0.0012 18.2 0.0 0.0039 16.6 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|325968164|ref|YP_004244356.1| - 0.038 13.7 0.0 0.26 11.0 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain KaiC PF06745.8 gi|325968164|ref|YP_004244356.1| - 0.049 12.7 2.4 0.84 8.7 0.0 3.2 2 1 1 3 3 3 0 KaiC HflK_N PF12221.3 gi|325968164|ref|YP_004244356.1| - 0.21 11.3 0.0 1.6 8.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial membrane protein N terminal AAA_23 PF13476.1 gi|325968164|ref|YP_004244356.1| - 0.73 10.1 8.5 0.61 10.3 2.5 3.2 2 1 1 3 3 3 0 AAA domain DUF4175 PF13779.1 gi|325968164|ref|YP_004244356.1| - 0.78 7.3 0.2 1.1 6.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Ribonuc_red_lgC PF02867.10 gi|325968165|ref|YP_004244357.1| - 1.1e-138 463.1 0.0 1.1e-73 248.6 0.0 2.1 2 0 0 2 2 2 2 Ribonucleotide reductase, barrel domain LAGLIDADG_3 PF14528.1 gi|325968165|ref|YP_004244357.1| - 5.6e-27 93.8 2.4 1.2e-23 83.0 0.3 3.7 3 0 0 3 3 3 1 LAGLIDADG-like domain Ribonuc_red_lgN PF00317.16 gi|325968165|ref|YP_004244357.1| - 8.9e-24 83.1 0.2 3.1e-23 81.3 0.0 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain Intein_splicing PF14890.1 gi|325968165|ref|YP_004244357.1| - 2.4e-11 43.0 0.5 2.6e-09 36.4 0.1 3.4 2 1 0 2 2 2 1 Intein splicing domain ATP-cone PF03477.11 gi|325968165|ref|YP_004244357.1| - 0.0032 17.8 0.0 0.013 15.9 0.0 2.1 1 0 0 1 1 1 1 ATP cone domain Hom_end PF05204.9 gi|325968165|ref|YP_004244357.1| - 0.032 14.1 0.1 1.2 9.1 0.0 2.4 2 0 0 2 2 2 0 Homing endonuclease LAGLIDADG_WhiA PF14527.1 gi|325968165|ref|YP_004244357.1| - 0.053 13.3 0.0 0.62 9.9 0.0 2.6 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain TF_Zn_Ribbon PF08271.7 gi|325968166|ref|YP_004244358.1| - 1.2e-05 24.5 2.4 1.9e-05 23.8 1.7 1.5 1 1 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|325968166|ref|YP_004244358.1| - 4.6e-05 22.7 2.5 8.4e-05 21.9 1.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Ogr_Delta PF04606.7 gi|325968166|ref|YP_004244358.1| - 8.9e-05 22.0 0.9 0.32 10.7 0.0 2.2 1 1 1 2 2 2 2 Ogr/Delta-like zinc finger CpXC PF14353.1 gi|325968166|ref|YP_004244358.1| - 0.00011 22.2 0.9 0.039 13.9 0.0 2.1 1 1 2 3 3 3 2 CpXC protein DUF1922 PF09082.5 gi|325968166|ref|YP_004244358.1| - 0.00014 21.8 0.7 0.00016 21.6 0.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) OrfB_Zn_ribbon PF07282.6 gi|325968166|ref|YP_004244358.1| - 0.00072 19.1 0.8 0.00098 18.7 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|325968166|ref|YP_004244358.1| - 0.00098 18.2 5.1 0.0045 16.1 3.7 1.9 1 1 1 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|325968166|ref|YP_004244358.1| - 0.0019 18.4 0.4 0.0028 17.9 0.3 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|325968166|ref|YP_004244358.1| - 0.0031 17.2 0.7 0.0049 16.6 0.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ISL3 PF14690.1 gi|325968166|ref|YP_004244358.1| - 0.0054 16.7 6.4 0.26 11.3 0.4 2.6 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|325968166|ref|YP_004244358.1| - 0.0073 15.9 1.5 0.016 14.9 1.0 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS91 PF14319.1 gi|325968166|ref|YP_004244358.1| - 0.013 15.0 0.2 0.014 14.9 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L37ae PF01780.14 gi|325968166|ref|YP_004244358.1| - 0.023 14.5 1.0 0.025 14.4 0.7 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family RecR PF02132.10 gi|325968166|ref|YP_004244358.1| - 0.029 13.8 1.0 3.4 7.1 0.1 2.3 1 1 1 2 2 2 0 RecR protein zinc_ribbon_4 PF13717.1 gi|325968166|ref|YP_004244358.1| - 0.03 13.9 1.1 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|325968166|ref|YP_004244358.1| - 0.033 14.0 1.1 1.3 8.8 0.2 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-H2C2_2 PF13465.1 gi|325968166|ref|YP_004244358.1| - 0.036 14.3 4.1 0.24 11.7 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|325968166|ref|YP_004244358.1| - 0.036 13.6 1.0 1.6 8.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|325968166|ref|YP_004244358.1| - 0.04 13.7 4.8 0.19 11.5 3.7 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|325968166|ref|YP_004244358.1| - 0.057 13.2 1.9 0.81 9.6 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Cys_rich_CPXG PF14255.1 gi|325968166|ref|YP_004244358.1| - 0.058 13.2 0.9 0.67 9.8 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG FYDLN_acid PF09538.5 gi|325968166|ref|YP_004244358.1| - 0.07 13.7 0.7 0.16 12.5 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-C2H2_4 PF13894.1 gi|325968166|ref|YP_004244358.1| - 0.078 13.3 3.5 1 9.8 0.1 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger zf-Di19 PF05605.7 gi|325968166|ref|YP_004244358.1| - 0.078 13.1 1.8 0.95 9.6 0.1 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C4_Topoisom PF01396.14 gi|325968166|ref|YP_004244358.1| - 0.087 12.3 3.4 1.2 8.6 0.2 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.4 gi|325968166|ref|YP_004244358.1| - 0.09 12.4 6.0 0.19 11.4 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-CHCC PF10276.4 gi|325968166|ref|YP_004244358.1| - 0.096 12.5 0.7 0.096 12.5 0.5 1.7 2 0 0 2 2 1 0 Zinc-finger domain Ribosomal_S27e PF01667.12 gi|325968166|ref|YP_004244358.1| - 0.1 12.1 0.8 0.16 11.5 0.5 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 PyrI_C PF02748.10 gi|325968166|ref|YP_004244358.1| - 0.11 11.9 0.9 0.14 11.5 0.3 1.5 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Cys_rich_CPCC PF14206.1 gi|325968166|ref|YP_004244358.1| - 0.13 11.8 4.6 1.5 8.4 3.6 1.9 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-NADH-PPase PF09297.6 gi|325968166|ref|YP_004244358.1| - 0.14 11.7 0.9 8.6 5.9 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|325968166|ref|YP_004244358.1| - 0.15 12.0 3.6 0.94 9.4 2.5 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-H2C2_5 PF13909.1 gi|325968166|ref|YP_004244358.1| - 0.15 12.3 1.6 0.82 10.0 0.0 2.3 1 1 1 2 2 2 0 C2H2-type zinc-finger domain zf-LITAF-like PF10601.4 gi|325968166|ref|YP_004244358.1| - 0.17 11.7 4.1 3.2 7.6 0.5 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain DUF1936 PF09151.5 gi|325968166|ref|YP_004244358.1| - 0.19 11.2 2.4 7.9 6.0 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Zn_ribbon_recom PF13408.1 gi|325968166|ref|YP_004244358.1| - 0.23 11.7 2.9 2.1 8.6 0.1 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain IBR PF01485.16 gi|325968166|ref|YP_004244358.1| - 0.26 11.1 2.7 0.5 10.2 1.9 1.5 1 1 0 1 1 1 0 IBR domain zf-C2HC_2 PF13913.1 gi|325968166|ref|YP_004244358.1| - 0.29 10.8 6.2 1.3 8.8 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-tcix PF14952.1 gi|325968166|ref|YP_004244358.1| - 0.51 9.7 7.2 10 5.5 4.7 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Auto_anti-p27 PF06677.7 gi|325968166|ref|YP_004244358.1| - 0.61 9.8 5.2 0.59 9.9 2.4 2.0 3 1 0 3 3 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.14 gi|325968166|ref|YP_004244358.1| - 0.63 9.7 2.3 1 9.0 1.3 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2 PF00096.21 gi|325968166|ref|YP_004244358.1| - 0.64 10.4 6.1 4.5 7.8 0.8 2.4 1 1 1 2 2 2 0 Zinc finger, C2H2 type DUF329 PF03884.9 gi|325968166|ref|YP_004244358.1| - 0.81 9.2 2.7 14 5.2 2.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) DUF2387 PF09526.5 gi|325968166|ref|YP_004244358.1| - 0.83 9.6 2.8 1.4 8.8 1.9 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DUF3797 PF12677.2 gi|325968166|ref|YP_004244358.1| - 0.84 9.3 6.2 0.96 9.1 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-Mss51 PF13824.1 gi|325968166|ref|YP_004244358.1| - 1.1 9.1 4.3 3.1 7.7 3.0 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.1 gi|325968166|ref|YP_004244358.1| - 1.2 8.3 4.4 19 4.5 0.2 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF1610 PF07754.6 gi|325968166|ref|YP_004244358.1| - 1.3 9.2 10.3 4.4 7.5 1.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2082 PF09855.4 gi|325968166|ref|YP_004244358.1| - 1.5 8.7 3.6 1.8 8.4 0.9 1.9 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Cys_rich_KTR PF14205.1 gi|325968166|ref|YP_004244358.1| - 1.6 8.2 4.3 36 3.9 3.0 2.3 1 1 0 1 1 1 0 Cysteine-rich KTR TFIIS_C PF01096.13 gi|325968166|ref|YP_004244358.1| - 4.6 6.9 6.5 7.5 6.2 0.6 2.2 1 1 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_3 PF14369.1 gi|325968166|ref|YP_004244358.1| - 5.7 7.0 5.8 7 6.7 0.2 2.2 1 1 1 2 2 2 0 zinc-finger Thiolase_N PF00108.18 gi|325968167|ref|YP_004244359.1| - 2.6e-61 206.9 0.0 3.7e-61 206.4 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|325968167|ref|YP_004244359.1| - 1.6e-48 163.1 0.7 5.1e-48 161.5 0.4 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|325968167|ref|YP_004244359.1| - 6.8e-08 32.3 0.0 1.5e-05 24.6 0.0 2.4 2 0 0 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.6 gi|325968167|ref|YP_004244359.1| - 0.032 12.7 0.0 0.078 11.4 0.0 1.6 2 0 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) Ketoacyl-synt_C PF02801.17 gi|325968167|ref|YP_004244359.1| - 0.057 13.2 0.1 15 5.4 0.1 2.9 2 1 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III_C PF08541.5 gi|325968167|ref|YP_004244359.1| - 0.071 13.1 0.1 0.43 10.6 0.0 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FUR PF01475.14 gi|325968168|ref|YP_004244360.1| - 5.8e-25 87.5 0.0 6.5e-25 87.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.2 gi|325968168|ref|YP_004244360.1| - 0.0013 18.5 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2551 PF10826.3 gi|325968168|ref|YP_004244360.1| - 0.025 14.4 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) HTH_IclR PF09339.5 gi|325968168|ref|YP_004244360.1| - 0.025 14.1 0.0 0.069 12.7 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|325968168|ref|YP_004244360.1| - 0.053 13.1 0.1 2.4 7.9 0.0 2.7 2 1 1 3 3 3 0 Homeodomain-like domain HTH_28 PF13518.1 gi|325968168|ref|YP_004244360.1| - 0.067 13.2 0.0 0.83 9.7 0.0 2.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|325968168|ref|YP_004244360.1| - 0.13 12.0 0.8 1.7 8.4 0.2 2.7 2 1 0 2 2 2 0 HTH domain Rubrerythrin PF02915.12 gi|325968169|ref|YP_004244361.1| - 1.5e-21 77.1 2.8 3.6e-21 75.9 1.8 1.7 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|325968169|ref|YP_004244361.1| - 4.4e-06 26.5 1.8 3e-05 23.7 1.3 1.9 1 1 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.1 gi|325968169|ref|YP_004244361.1| - 0.009 15.9 0.3 0.014 15.3 0.2 1.4 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.7 gi|325968169|ref|YP_004244361.1| - 0.11 12.2 1.0 1 9.1 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF892) DUF3501 PF12007.3 gi|325968170|ref|YP_004244362.1| - 5.1e-44 150.2 0.1 6e-44 150.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) GatB_N PF02934.10 gi|325968171|ref|YP_004244363.1| - 2.8e-76 256.1 0.0 3.9e-76 255.6 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|325968171|ref|YP_004244363.1| - 6.3e-12 45.4 3.5 1.3e-11 44.3 2.4 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|325968171|ref|YP_004244363.1| - 3.5e-09 36.7 0.0 1.2e-08 34.9 0.0 1.9 2 0 0 2 2 2 1 GAD domain RtcB PF01139.12 gi|325968173|ref|YP_004244365.1| - 7e-147 489.7 0.0 8.1e-147 489.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.10 gi|325968173|ref|YP_004244365.1| - 0.074 12.8 0.0 0.2 11.5 0.0 1.7 2 0 0 2 2 2 0 Complex 1 protein (LYR family) Ribosomal_S7 PF00177.16 gi|325968174|ref|YP_004244366.1| - 7.3e-47 158.6 0.1 9.1e-47 158.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTPase_binding PF09027.5 gi|325968174|ref|YP_004244366.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 GTPase binding Rep_fac_C PF08542.6 gi|325968175|ref|YP_004244367.1| - 1.4e-19 69.8 0.1 4.9e-19 68.1 0.0 2.0 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|325968175|ref|YP_004244367.1| - 1.3e-17 64.1 0.0 2.6e-17 63.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|325968175|ref|YP_004244367.1| - 3.3e-17 62.6 0.0 5.7e-15 55.3 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit RuvB_N PF05496.7 gi|325968175|ref|YP_004244367.1| - 1.2e-09 37.6 0.0 3.3e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|325968175|ref|YP_004244367.1| - 3e-09 37.1 0.1 0.004 17.3 0.0 2.8 1 1 1 2 2 2 2 AAA domain Rad17 PF03215.10 gi|325968175|ref|YP_004244367.1| - 3.5e-08 32.6 0.0 0.00023 20.0 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|325968175|ref|YP_004244367.1| - 8.7e-08 32.1 0.0 1.5e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325968175|ref|YP_004244367.1| - 4.5e-07 30.0 0.0 0.00025 21.0 0.0 2.6 2 1 1 3 3 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|325968175|ref|YP_004244367.1| - 1.1e-06 28.1 0.2 4.1e-06 26.3 0.0 2.1 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|325968175|ref|YP_004244367.1| - 6.1e-06 25.9 0.0 1.5e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|325968175|ref|YP_004244367.1| - 9.7e-06 25.3 0.0 1.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|325968175|ref|YP_004244367.1| - 1.5e-05 23.8 0.0 0.00067 18.4 0.0 2.6 3 0 0 3 3 3 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|325968175|ref|YP_004244367.1| - 1.9e-05 23.8 0.0 0.00066 18.9 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|325968175|ref|YP_004244367.1| - 3e-05 23.5 0.0 0.00028 20.3 0.0 2.2 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_5 PF07728.9 gi|325968175|ref|YP_004244367.1| - 7.6e-05 22.4 0.0 0.00026 20.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|325968175|ref|YP_004244367.1| - 0.00012 21.0 0.0 0.011 14.6 0.0 2.4 2 0 0 2 2 2 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|325968175|ref|YP_004244367.1| - 0.00013 21.7 0.0 0.17 11.5 0.0 2.2 1 1 1 2 2 2 2 Archaeal ATPase AAA_17 PF13207.1 gi|325968175|ref|YP_004244367.1| - 0.00015 22.5 0.2 0.00037 21.2 0.0 2.2 2 1 0 2 2 1 1 AAA domain PhoH PF02562.11 gi|325968175|ref|YP_004244367.1| - 0.00016 20.9 0.8 0.057 12.6 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_10 PF12846.2 gi|325968175|ref|YP_004244367.1| - 0.00022 20.7 0.3 0.21 10.9 0.0 2.5 1 1 0 2 2 2 2 AAA-like domain AAA_18 PF13238.1 gi|325968175|ref|YP_004244367.1| - 0.00023 21.4 0.0 0.002 18.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.6 gi|325968175|ref|YP_004244367.1| - 0.00048 19.7 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.1 gi|325968175|ref|YP_004244367.1| - 0.00079 19.0 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|325968175|ref|YP_004244367.1| - 0.00088 19.1 0.0 0.0076 16.0 0.0 2.0 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|325968175|ref|YP_004244367.1| - 0.0012 18.3 0.1 0.13 11.7 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|325968175|ref|YP_004244367.1| - 0.0012 18.4 0.1 0.019 14.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|325968175|ref|YP_004244367.1| - 0.0033 16.2 0.1 0.34 9.6 0.0 2.4 1 1 1 2 2 2 1 ArgK protein DUF815 PF05673.8 gi|325968175|ref|YP_004244367.1| - 0.0051 15.7 0.0 0.0083 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) RNA_helicase PF00910.17 gi|325968175|ref|YP_004244367.1| - 0.0052 16.9 0.0 0.011 15.9 0.0 1.7 1 1 0 1 1 1 1 RNA helicase NB-ARC PF00931.17 gi|325968175|ref|YP_004244367.1| - 0.0066 15.3 0.0 0.0086 14.9 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain Parvo_NS1 PF01057.12 gi|325968175|ref|YP_004244367.1| - 0.0086 14.9 0.0 0.018 13.9 0.0 1.4 1 0 0 1 1 1 1 Parvovirus non-structural protein NS1 FtsK_SpoIIIE PF01580.13 gi|325968175|ref|YP_004244367.1| - 0.0095 15.4 0.0 0.043 13.2 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family Sigma54_activat PF00158.21 gi|325968175|ref|YP_004244367.1| - 0.011 15.2 0.0 0.73 9.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF2075 PF09848.4 gi|325968175|ref|YP_004244367.1| - 0.011 14.7 0.0 0.099 11.6 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KaiC PF06745.8 gi|325968175|ref|YP_004244367.1| - 0.012 14.7 0.0 0.028 13.5 0.0 1.6 1 0 0 1 1 1 0 KaiC DNA_pol3_delta PF06144.8 gi|325968175|ref|YP_004244367.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_33 PF13671.1 gi|325968175|ref|YP_004244367.1| - 0.012 15.4 0.0 0.03 14.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|325968175|ref|YP_004244367.1| - 0.016 15.1 0.0 0.07 13.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|325968175|ref|YP_004244367.1| - 0.028 14.0 0.0 0.9 9.1 0.0 2.2 1 1 0 1 1 1 0 NACHT domain SNF2_N PF00176.18 gi|325968175|ref|YP_004244367.1| - 0.029 13.1 0.1 0.25 10.0 0.0 2.0 1 1 1 2 2 2 0 SNF2 family N-terminal domain PEPCK_ATP PF01293.15 gi|325968175|ref|YP_004244367.1| - 0.029 12.9 0.0 0.045 12.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Viral_helicase1 PF01443.13 gi|325968175|ref|YP_004244367.1| - 0.029 13.8 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.1 gi|325968175|ref|YP_004244367.1| - 0.059 13.6 0.0 0.16 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|325968175|ref|YP_004244367.1| - 0.06 12.8 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain KTI12 PF08433.5 gi|325968175|ref|YP_004244367.1| - 0.072 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Sigma54_activ_2 PF14532.1 gi|325968175|ref|YP_004244367.1| - 0.075 13.0 0.0 0.22 11.5 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA PF00004.24 gi|325968176|ref|YP_004244368.1| - 7.4e-15 55.3 0.1 3.8e-13 49.7 0.0 2.7 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|325968176|ref|YP_004244368.1| - 4.1e-10 38.9 0.1 6e-05 21.9 0.0 2.5 3 0 0 3 3 3 2 Rad17 cell cycle checkpoint protein TIP49 PF06068.8 gi|325968176|ref|YP_004244368.1| - 7e-10 38.1 0.0 1.3e-05 24.1 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus RuvB_N PF05496.7 gi|325968176|ref|YP_004244368.1| - 1.4e-09 37.3 0.0 4.1e-08 32.5 0.0 2.3 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DNA_pol3_delta PF06144.8 gi|325968176|ref|YP_004244368.1| - 1.2e-07 31.4 0.0 2.4e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_17 PF13207.1 gi|325968176|ref|YP_004244368.1| - 3.8e-06 27.7 0.4 2.3e-05 25.1 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|325968176|ref|YP_004244368.1| - 9.1e-06 25.6 0.0 1.5e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|325968176|ref|YP_004244368.1| - 1.4e-05 24.1 0.0 4.3e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RFC1 PF08519.7 gi|325968176|ref|YP_004244368.1| - 2.3e-05 24.1 0.1 3.8e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_22 PF13401.1 gi|325968176|ref|YP_004244368.1| - 3.2e-05 24.0 0.8 0.0017 18.5 0.2 3.3 2 1 0 2 2 1 1 AAA domain AAA_5 PF07728.9 gi|325968176|ref|YP_004244368.1| - 3.5e-05 23.5 0.2 0.00033 20.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|325968176|ref|YP_004244368.1| - 8.1e-05 21.8 0.0 0.00016 20.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|325968176|ref|YP_004244368.1| - 9.4e-05 22.3 0.0 0.00018 21.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|325968176|ref|YP_004244368.1| - 0.00011 22.2 0.0 0.00025 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325968176|ref|YP_004244368.1| - 0.00019 21.4 0.2 0.0012 18.9 0.0 2.6 2 1 0 2 2 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|325968176|ref|YP_004244368.1| - 0.00028 20.3 0.0 0.00066 19.1 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein NACHT PF05729.7 gi|325968176|ref|YP_004244368.1| - 0.0003 20.4 0.1 0.21 11.2 0.0 2.6 3 0 0 3 3 2 1 NACHT domain AAA_18 PF13238.1 gi|325968176|ref|YP_004244368.1| - 0.0008 19.7 0.3 0.0031 17.8 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|325968176|ref|YP_004244368.1| - 0.0014 18.3 0.1 0.006 16.3 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain AAA_25 PF13481.1 gi|325968176|ref|YP_004244368.1| - 0.0035 16.7 0.0 0.0097 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|325968176|ref|YP_004244368.1| - 0.0044 16.1 0.0 0.012 14.7 0.0 1.8 1 0 0 1 1 1 1 KaiC NB-ARC PF00931.17 gi|325968176|ref|YP_004244368.1| - 0.01 14.7 0.0 0.027 13.3 0.0 1.7 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.16 gi|325968176|ref|YP_004244368.1| - 0.012 14.8 0.0 0.024 13.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|325968176|ref|YP_004244368.1| - 0.017 14.6 0.0 0.034 13.6 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|325968176|ref|YP_004244368.1| - 0.018 14.7 0.0 0.049 13.3 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PhoH PF02562.11 gi|325968176|ref|YP_004244368.1| - 0.027 13.6 0.0 0.061 12.5 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|325968176|ref|YP_004244368.1| - 0.037 14.3 0.1 0.12 12.6 0.0 1.8 2 0 0 2 2 1 0 ABC transporter Parvo_NS1 PF01057.12 gi|325968176|ref|YP_004244368.1| - 0.039 12.8 0.0 0.086 11.6 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.21 gi|325968176|ref|YP_004244368.1| - 0.039 13.4 0.0 0.18 11.2 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain T2SE PF00437.15 gi|325968176|ref|YP_004244368.1| - 0.042 12.7 0.0 0.086 11.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|325968176|ref|YP_004244368.1| - 0.046 12.8 0.0 0.1 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|325968176|ref|YP_004244368.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.13 gi|325968176|ref|YP_004244368.1| - 0.071 12.7 0.1 0.64 9.6 0.0 2.3 1 1 0 1 1 1 0 Bacterial dnaA protein ResIII PF04851.10 gi|325968176|ref|YP_004244368.1| - 0.072 12.9 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PPV_E1_C PF00519.12 gi|325968176|ref|YP_004244368.1| - 0.092 11.3 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Papillomavirus helicase Sigma54_activ_2 PF14532.1 gi|325968176|ref|YP_004244368.1| - 0.094 12.7 0.0 0.24 11.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-54 interaction domain MMR_HSR1 PF01926.18 gi|325968176|ref|YP_004244368.1| - 0.096 12.6 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|325968176|ref|YP_004244368.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|325968176|ref|YP_004244368.1| - 0.12 12.2 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) UPF0126 PF03458.8 gi|325968178|ref|YP_004244370.1| - 1.1e-43 146.6 28.2 5.7e-26 89.9 6.9 2.6 3 0 0 3 3 3 2 UPF0126 domain 5TM-5TMR_LYT PF07694.7 gi|325968178|ref|YP_004244370.1| - 8.8 5.6 27.0 0.14 11.4 6.1 2.5 3 0 0 3 3 3 0 5TMR of 5TMR-LYT Oxidored_molyb PF00174.14 gi|325968179|ref|YP_004244371.1| - 4.4e-41 140.1 0.0 5.7e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF89 PF01937.14 gi|325968180|ref|YP_004244372.1| - 1e-19 70.6 0.8 1.4e-17 63.5 0.5 2.1 1 1 0 1 1 1 1 Protein of unknown function DUF89 Pox_H7 PF04787.7 gi|325968180|ref|YP_004244372.1| - 0.033 13.9 0.3 0.12 12.2 0.1 1.9 2 0 0 2 2 2 0 Late protein H7 DUF3829 PF12889.2 gi|325968181|ref|YP_004244373.1| - 0.1 11.7 2.8 8.8 5.4 0.0 3.5 3 1 0 4 4 4 0 Protein of unknown function (DUF3829) TruD PF01142.13 gi|325968183|ref|YP_004244375.1| - 5.4e-83 278.7 0.0 4.2e-82 275.8 0.0 1.8 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Prok-RING_2 PF14445.1 gi|325968184|ref|YP_004244376.1| - 0.0045 16.9 2.2 0.011 15.6 0.1 2.0 2 0 0 2 2 2 1 Prokaryotic RING finger family 2 GAF PF01590.21 gi|325968184|ref|YP_004244376.1| - 0.042 13.9 0.1 0.077 13.1 0.0 1.4 1 1 0 1 1 1 0 GAF domain FYVE PF01363.16 gi|325968184|ref|YP_004244376.1| - 0.079 12.8 0.4 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 FYVE zinc finger NMD3 PF04981.8 gi|325968184|ref|YP_004244376.1| - 0.15 11.1 2.3 5.2 6.1 0.0 2.0 1 1 1 2 2 2 0 NMD3 family UPF0547 PF10571.4 gi|325968184|ref|YP_004244376.1| - 1.7 8.4 5.2 26 4.6 0.3 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DUF359 PF04019.7 gi|325968186|ref|YP_004244378.1| - 1.6e-28 98.5 0.0 2.2e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) RibD_C PF01872.12 gi|325968187|ref|YP_004244379.1| - 7.3e-54 182.4 0.0 8.2e-54 182.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Asp_protease_2 PF13650.1 gi|325968189|ref|YP_004244381.1| - 2.4e-06 27.9 0.0 3.5e-06 27.4 0.0 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|325968189|ref|YP_004244381.1| - 0.00055 19.7 0.0 0.00098 18.8 0.0 1.4 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease DUF72 PF01904.13 gi|325968193|ref|YP_004244385.1| - 2e-40 139.0 0.0 2.3e-40 138.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF364 PF04016.7 gi|325968194|ref|YP_004244386.1| - 2.1e-30 105.0 0.0 3.3e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|325968194|ref|YP_004244386.1| - 3.3e-09 36.7 0.0 6.5e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) DUF473 PF04322.7 gi|325968194|ref|YP_004244386.1| - 0.036 13.6 0.1 0.083 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF473) AA_permease PF00324.16 gi|325968196|ref|YP_004244388.1| - 6.2e-26 90.7 49.0 9e-26 90.2 34.0 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|325968196|ref|YP_004244388.1| - 1.8e-16 59.7 52.4 2.6e-16 59.1 36.2 1.3 1 1 0 1 1 1 1 Amino acid permease HCV_NS4a PF01006.15 gi|325968196|ref|YP_004244388.1| - 1.2 8.7 4.3 5.3 6.6 3.0 2.1 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a MFS_1 PF07690.11 gi|325968197|ref|YP_004244389.1| - 3.6e-24 85.1 62.2 3.6e-24 85.1 43.1 2.6 1 1 1 2 2 2 1 Major Facilitator Superfamily YrhK PF14145.1 gi|325968198|ref|YP_004244390.1| - 0.61 9.7 8.1 0.24 11.0 0.4 3.0 2 1 1 3 3 3 0 YrhK-like protein FA_desaturase PF00487.19 gi|325968198|ref|YP_004244390.1| - 1.7 7.9 7.8 2.3 7.5 5.4 1.3 1 0 0 1 1 1 0 Fatty acid desaturase Amidohydro_2 PF04909.9 gi|325968199|ref|YP_004244391.1| - 6.6e-15 55.4 0.0 8.8e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase AMP-binding PF00501.23 gi|325968200|ref|YP_004244392.1| - 1.4e-82 277.3 0.0 1.6e-82 277.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325968200|ref|YP_004244392.1| - 1.3e-16 61.2 0.1 2.8e-16 60.2 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|325968201|ref|YP_004244393.1| - 9.5e-45 152.3 0.5 1.7e-44 151.5 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|325968201|ref|YP_004244393.1| - 1.3e-27 96.6 0.0 2.8e-27 95.5 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|325968201|ref|YP_004244393.1| - 8e-22 77.9 0.1 1.1e-21 77.4 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|325968201|ref|YP_004244393.1| - 4.4e-15 54.9 0.0 8.4e-15 54.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|325968201|ref|YP_004244393.1| - 0.00044 19.7 0.1 0.0036 16.7 0.0 2.1 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB_N PF11794.3 gi|325968202|ref|YP_004244394.1| - 1.7e-73 247.2 1.5 2.3e-73 246.8 1.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|325968202|ref|YP_004244394.1| - 1.7e-43 147.8 1.0 2.7e-43 147.2 0.7 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.14 gi|325968202|ref|YP_004244394.1| - 0.084 12.4 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain PALP PF00291.20 gi|325968203|ref|YP_004244395.1| - 2.3e-31 109.1 0.0 2.9e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GTP_EFTU_D4 PF14578.1 gi|325968204|ref|YP_004244396.1| - 1.3e-27 95.2 2.7 4.5e-27 93.4 1.9 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.22 gi|325968204|ref|YP_004244396.1| - 1.7e-27 96.0 0.0 2.1e-26 92.5 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|325968204|ref|YP_004244396.1| - 1e-18 67.1 1.4 2e-18 66.2 0.4 1.8 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|325968204|ref|YP_004244396.1| - 2.5e-09 37.1 8.0 2.6e-08 33.8 0.1 3.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|325968204|ref|YP_004244396.1| - 0.00011 22.0 0.0 0.00024 21.0 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|325968204|ref|YP_004244396.1| - 0.0017 18.8 0.0 0.0061 17.0 0.0 2.0 2 0 0 2 2 2 1 Miro-like protein Ras PF00071.17 gi|325968204|ref|YP_004244396.1| - 0.015 14.7 0.0 0.19 11.1 0.0 2.3 1 1 0 1 1 1 0 Ras family DUF1488 PF07369.6 gi|325968204|ref|YP_004244396.1| - 0.041 13.7 0.0 0.099 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1488) DUF58 PF01882.13 gi|325968205|ref|YP_004244397.1| - 4.3e-06 26.7 0.0 8.3e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.14 gi|325968206|ref|YP_004244398.1| - 1.9e-10 40.9 0.0 2.9e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF1434 PF07254.7 gi|325968206|ref|YP_004244398.1| - 0.48 10.2 2.8 0.48 10.2 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1434) DUF4129 PF13559.1 gi|325968207|ref|YP_004244399.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) PRRSV_Env PF02340.10 gi|325968207|ref|YP_004244399.1| - 0.14 11.3 0.3 0.2 10.7 0.2 1.2 1 0 0 1 1 1 0 PRRSV putative envelope protein Ribosomal_L24e PF01246.15 gi|325968208|ref|YP_004244400.1| - 1.1e-19 69.9 0.4 1.2e-19 69.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|325968208|ref|YP_004244400.1| - 1.9e-05 24.2 0.1 2.5e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF581 PF04570.9 gi|325968208|ref|YP_004244400.1| - 0.037 13.3 0.1 0.057 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF581) zf-ribbon_3 PF13248.1 gi|325968208|ref|YP_004244400.1| - 0.074 12.2 0.1 0.12 11.5 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.11 gi|325968208|ref|YP_004244400.1| - 0.56 9.9 3.1 1.7 8.3 2.1 1.8 1 1 0 1 1 1 0 HIT zinc finger DUF2116 PF09889.4 gi|325968208|ref|YP_004244400.1| - 0.93 9.3 5.3 2 8.2 0.2 2.3 2 1 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NUDIX PF00293.23 gi|325968209|ref|YP_004244401.1| - 8.4e-19 67.5 0.0 1e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain HhH-GPD PF00730.20 gi|325968210|ref|YP_004244402.1| - 1.4e-19 70.3 0.0 1.9e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|325968210|ref|YP_004244402.1| - 2.3e-05 23.8 1.0 4.5e-05 22.9 0.1 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2400 PF09674.5 gi|325968210|ref|YP_004244402.1| - 0.00068 19.4 0.0 0.0024 17.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2400) HHH_8 PF14716.1 gi|325968210|ref|YP_004244402.1| - 0.0035 17.4 0.0 0.14 12.3 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|325968210|ref|YP_004244402.1| - 0.0038 17.3 1.8 0.0071 16.4 1.2 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|325968210|ref|YP_004244402.1| - 0.021 14.9 1.7 0.11 12.7 1.2 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF1677 PF07911.8 gi|325968210|ref|YP_004244402.1| - 0.03 14.4 0.3 0.061 13.5 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1677) Transposase_20 PF02371.11 gi|325968210|ref|YP_004244402.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Proteasome PF00227.21 gi|325968211|ref|YP_004244403.1| - 1.1e-47 161.7 0.1 1.3e-47 161.5 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF849 PF05853.7 gi|325968211|ref|YP_004244403.1| - 0.1 11.4 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) FKBP_C PF00254.23 gi|325968212|ref|YP_004244404.1| - 1.3e-10 41.1 0.2 6.8e-10 38.8 0.0 2.0 1 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF3553 PF12073.3 gi|325968212|ref|YP_004244404.1| - 0.059 12.6 1.4 0.37 10.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) MS_channel PF00924.13 gi|325968212|ref|YP_004244404.1| - 0.068 12.5 1.8 1.4 8.2 0.3 2.5 1 1 0 2 2 2 0 Mechanosensitive ion channel DUF131 PF01998.12 gi|325968213|ref|YP_004244405.1| - 7.1e-20 70.1 3.7 7.1e-20 70.1 2.6 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF1980 PF09323.5 gi|325968213|ref|YP_004244405.1| - 0.00033 20.4 0.0 0.00033 20.4 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF1980) TctB PF07331.6 gi|325968213|ref|YP_004244405.1| - 0.00043 19.9 2.2 0.0017 17.9 1.5 1.8 1 1 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family DUF2207 PF09972.4 gi|325968213|ref|YP_004244405.1| - 0.016 13.8 2.9 0.021 13.4 2.0 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4328 PF14219.1 gi|325968213|ref|YP_004244405.1| - 0.029 13.6 0.1 1.5 8.0 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4328) DUF872 PF05915.7 gi|325968213|ref|YP_004244405.1| - 0.038 13.8 0.1 0.038 13.8 0.1 1.9 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) PRA1 PF03208.14 gi|325968213|ref|YP_004244405.1| - 0.044 13.1 0.9 0.052 12.8 0.6 1.1 1 0 0 1 1 1 0 PRA1 family protein CD20 PF04103.10 gi|325968213|ref|YP_004244405.1| - 0.064 13.1 1.0 0.19 11.6 0.8 1.9 1 1 0 1 1 1 0 CD20-like family 7tm_2 PF00002.19 gi|325968213|ref|YP_004244405.1| - 0.069 12.2 0.6 0.088 11.8 0.4 1.1 1 0 0 1 1 1 0 7 transmembrane receptor (Secretin family) DUF3357 PF11837.3 gi|325968213|ref|YP_004244405.1| - 0.075 12.8 0.8 0.38 10.6 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) DUF2976 PF11190.3 gi|325968213|ref|YP_004244405.1| - 0.081 12.4 0.1 0.081 12.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) Sdh_cyt PF01127.17 gi|325968213|ref|YP_004244405.1| - 0.12 12.2 3.0 0.27 11.0 0.1 2.0 2 0 0 2 2 2 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ATP-synt_8 PF00895.15 gi|325968213|ref|YP_004244405.1| - 0.14 12.3 1.2 14 5.9 1.0 2.2 2 0 0 2 2 2 0 ATP synthase protein 8 LRRC37AB_C PF14914.1 gi|325968213|ref|YP_004244405.1| - 0.16 11.4 7.4 0.57 9.6 0.2 2.1 2 0 0 2 2 2 0 LRRC37A/B like protein 1 C-terminal domain EphA2_TM PF14575.1 gi|325968213|ref|YP_004244405.1| - 0.2 12.0 0.1 0.2 12.0 0.1 2.3 2 1 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain NKAIN PF05640.9 gi|325968213|ref|YP_004244405.1| - 0.2 10.5 0.1 0.2 10.5 0.1 2.0 2 0 0 2 2 2 0 Na,K-Atpase Interacting protein Bap31 PF05529.7 gi|325968213|ref|YP_004244405.1| - 0.21 11.0 2.2 0.7 9.3 0.0 2.0 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like MRAP PF15183.1 gi|325968213|ref|YP_004244405.1| - 0.24 11.0 1.4 7.2 6.2 1.0 2.0 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family Spore_YhaL PF14147.1 gi|325968213|ref|YP_004244405.1| - 0.28 10.6 0.1 0.28 10.6 0.1 2.7 2 1 1 3 3 3 0 Sporulation protein YhaL HemY_N PF07219.8 gi|325968213|ref|YP_004244405.1| - 0.3 10.6 3.4 12 5.5 0.0 2.1 2 0 0 2 2 2 0 HemY protein N-terminus CcoS PF03597.10 gi|325968213|ref|YP_004244405.1| - 0.34 10.4 0.1 0.34 10.4 0.0 2.5 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type DUF4064 PF13273.1 gi|325968213|ref|YP_004244405.1| - 0.36 10.9 8.6 0.75 9.9 6.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Tic20 PF09685.5 gi|325968213|ref|YP_004244405.1| - 0.88 9.5 9.8 1.6 8.7 0.2 2.2 2 0 0 2 2 2 0 Tic20-like protein ODV-E18 PF10717.4 gi|325968213|ref|YP_004244405.1| - 1.3 8.5 9.2 0.84 9.1 0.2 2.1 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 Sigma_reg_N PF13800.1 gi|325968213|ref|YP_004244405.1| - 1.4 8.9 7.5 8.1 6.5 0.1 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal TMEM154 PF15102.1 gi|325968213|ref|YP_004244405.1| - 1.5 8.4 7.9 0.13 11.9 0.2 2.0 2 0 0 2 2 2 0 TMEM154 protein family SecG PF03840.9 gi|325968213|ref|YP_004244405.1| - 2 8.1 8.7 4.8 7.0 0.1 2.3 2 0 0 2 2 2 0 Preprotein translocase SecG subunit DUF202 PF02656.10 gi|325968213|ref|YP_004244405.1| - 2.2 8.5 5.1 3.5 7.9 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Tmemb_18A PF09771.4 gi|325968213|ref|YP_004244405.1| - 2.5 8.1 5.5 0.53 10.2 0.5 1.9 2 0 0 2 2 2 0 Transmembrane protein 188 GP41 PF00517.12 gi|325968213|ref|YP_004244405.1| - 2.8 7.4 5.9 19 4.7 1.8 2.0 2 0 0 2 2 2 0 Retroviral envelope protein DUF805 PF05656.9 gi|325968213|ref|YP_004244405.1| - 3.9 7.3 6.6 56 3.5 4.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Baculo_11_kDa PF06143.6 gi|325968213|ref|YP_004244405.1| - 4.9 6.5 6.5 24 4.4 0.0 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family Claudin_3 PF06653.6 gi|325968213|ref|YP_004244405.1| - 7.1 6.3 7.6 49 3.6 5.4 1.8 1 1 0 1 1 1 0 Tight junction protein, Claudin-like Tad PF13400.1 gi|325968213|ref|YP_004244405.1| - 8 6.5 10.0 1.2 9.2 0.5 2.3 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF4097 PF13349.1 gi|325968213|ref|YP_004244405.1| - 9.8 5.6 6.8 5 6.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) COPI_assoc PF08507.5 gi|325968213|ref|YP_004244405.1| - 9.9 5.8 8.3 1.2 8.8 0.1 2.1 1 1 1 2 2 2 0 COPI associated protein YtpI PF14007.1 gi|325968214|ref|YP_004244406.1| - 0.0023 17.8 0.4 0.0023 17.8 0.2 2.3 2 1 0 2 2 2 1 YtpI-like protein CcmD PF04995.9 gi|325968214|ref|YP_004244406.1| - 0.0057 16.3 0.2 0.0057 16.3 0.1 2.3 2 0 0 2 2 2 1 Heme exporter protein D (CcmD) TPPK_C PF12555.3 gi|325968214|ref|YP_004244406.1| - 0.013 15.2 5.2 0.039 13.6 3.6 1.9 1 1 0 1 1 1 0 Thiamine pyrophosphokinase C terminal DUF2370 PF10176.4 gi|325968214|ref|YP_004244406.1| - 0.022 14.1 0.2 0.03 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) Pox_P21 PF05313.7 gi|325968214|ref|YP_004244406.1| - 0.032 13.4 6.8 0.039 13.2 4.7 1.0 1 0 0 1 1 1 0 Poxvirus P21 membrane protein DUF898 PF05987.8 gi|325968214|ref|YP_004244406.1| - 0.042 12.7 4.6 0.052 12.4 3.2 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) ABC2_membrane_5 PF13346.1 gi|325968214|ref|YP_004244406.1| - 0.049 12.9 15.5 0.062 12.5 10.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Neur_chan_memb PF02932.11 gi|325968214|ref|YP_004244406.1| - 0.14 12.0 0.1 0.14 12.0 0.1 1.7 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region NfeD PF01957.13 gi|325968214|ref|YP_004244406.1| - 0.18 11.9 10.2 0.33 11.0 7.1 1.4 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding Nramp PF01566.13 gi|325968214|ref|YP_004244406.1| - 0.24 10.1 8.4 0.28 9.9 5.8 1.0 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein DUF2393 PF09624.5 gi|325968214|ref|YP_004244406.1| - 0.37 10.3 8.0 0.1 12.1 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2393) DUF4131 PF13567.1 gi|325968214|ref|YP_004244406.1| - 0.72 9.2 5.5 1.8 7.9 3.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Tad PF13400.1 gi|325968214|ref|YP_004244406.1| - 1.6 8.7 0.0 1.6 8.7 0.0 2.9 3 0 0 3 3 3 0 Putative Flp pilus-assembly TadE/G-like 2TM PF13239.1 gi|325968214|ref|YP_004244406.1| - 2.2 8.4 9.1 17 5.5 6.3 2.0 1 1 0 1 1 1 0 2TM domain DUF3278 PF11683.3 gi|325968214|ref|YP_004244406.1| - 3.1 7.7 12.0 0.3 11.0 1.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3278) DUF843 PF05814.6 gi|325968214|ref|YP_004244406.1| - 4.9 7.0 6.5 1.3 8.8 0.2 2.2 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) WBP-1 PF11669.3 gi|325968214|ref|YP_004244406.1| - 5 7.2 6.5 0.33 11.0 0.7 1.8 2 0 0 2 2 2 0 WW domain-binding protein 1 DUF4282 PF14110.1 gi|325968214|ref|YP_004244406.1| - 5.8 7.1 13.3 4.4 7.5 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) DUF4381 PF14316.1 gi|325968214|ref|YP_004244406.1| - 6.1 6.9 6.4 0.47 10.5 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) DUF3043 PF11241.3 gi|325968214|ref|YP_004244406.1| - 6.4 6.3 7.8 0.4 10.2 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3043) DUF4231 PF14015.1 gi|325968214|ref|YP_004244406.1| - 6.9 6.6 12.2 63 3.6 8.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3290 PF11694.3 gi|325968214|ref|YP_004244406.1| - 7.8 6.2 9.1 0.23 11.1 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) MscS_TM PF12794.2 gi|325968214|ref|YP_004244406.1| - 8.1 4.9 11.1 0.43 9.1 0.6 2.1 1 1 1 2 2 2 0 Mechanosensitive ion channel inner membrane domain 1 Aminotran_1_2 PF00155.16 gi|325968215|ref|YP_004244407.1| - 2.7e-23 82.4 0.0 3.4e-23 82.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|325968215|ref|YP_004244407.1| - 0.00016 20.3 0.0 0.0002 20.0 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|325968215|ref|YP_004244407.1| - 0.0028 16.8 0.0 0.0044 16.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase CTP_synth_N PF06418.9 gi|325968217|ref|YP_004244409.1| - 8.5e-126 418.6 0.1 1.3e-125 418.0 0.1 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|325968217|ref|YP_004244409.1| - 6.1e-52 175.8 0.0 9.3e-52 175.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|325968217|ref|YP_004244409.1| - 2.2e-09 37.0 0.0 5.1e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|325968217|ref|YP_004244409.1| - 2.8e-07 30.1 0.0 4.8e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TRF PF08558.5 gi|325968218|ref|YP_004244410.1| - 0.013 14.8 0.3 0.014 14.7 0.2 1.2 1 0 0 1 1 1 0 Telomere repeat binding factor (TRF) DUF4389 PF14333.1 gi|325968219|ref|YP_004244411.1| - 0.076 12.7 0.7 0.098 12.3 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) MacB_PCD PF12704.2 gi|325968219|ref|YP_004244411.1| - 0.09 12.3 0.8 0.088 12.3 0.5 1.1 1 0 0 1 1 1 0 MacB-like periplasmic core domain DS PF01916.12 gi|325968220|ref|YP_004244412.1| - 3.6e-80 269.2 0.1 4.2e-80 269.0 0.1 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Methyltransf_18 PF12847.2 gi|325968221|ref|YP_004244413.1| - 2.9e-08 34.2 0.0 4.5e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968221|ref|YP_004244413.1| - 6.2e-08 32.3 0.0 8.1e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|325968221|ref|YP_004244413.1| - 3.5e-07 29.5 0.0 4.4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|325968221|ref|YP_004244413.1| - 1.3e-05 25.2 0.0 1.8e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|325968221|ref|YP_004244413.1| - 3.6e-05 24.0 0.0 5.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|325968221|ref|YP_004244413.1| - 5.2e-05 22.6 0.0 0.00011 21.6 0.0 1.5 1 1 0 1 1 1 1 Histone methylation protein DOT1 DUF2172 PF09940.4 gi|325968221|ref|YP_004244413.1| - 0.00057 18.3 0.1 0.00086 17.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2172) MTS PF05175.9 gi|325968221|ref|YP_004244413.1| - 0.00077 18.8 0.0 0.0012 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|325968221|ref|YP_004244413.1| - 0.0017 17.9 0.0 0.0031 17.1 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 HTH_24 PF13412.1 gi|325968221|ref|YP_004244413.1| - 0.002 17.4 1.5 0.0033 16.7 0.6 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PqqD PF05402.7 gi|325968221|ref|YP_004244413.1| - 0.0026 17.7 0.1 0.02 14.9 0.1 2.3 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Methyltransf_4 PF02390.12 gi|325968221|ref|YP_004244413.1| - 0.0029 16.6 0.0 0.0049 15.9 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase TrmB PF01978.14 gi|325968221|ref|YP_004244413.1| - 0.0044 16.6 0.3 0.0093 15.6 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PCMT PF01135.14 gi|325968221|ref|YP_004244413.1| - 0.0052 16.3 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TFIIE_alpha PF02002.12 gi|325968221|ref|YP_004244413.1| - 0.0064 15.9 1.3 0.0064 15.9 0.9 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit Methyltransf_32 PF13679.1 gi|325968221|ref|YP_004244413.1| - 0.0068 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325968221|ref|YP_004244413.1| - 0.0092 15.7 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|325968221|ref|YP_004244413.1| - 0.011 14.7 0.0 0.024 13.6 0.0 1.5 1 1 1 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|325968221|ref|YP_004244413.1| - 0.026 15.0 0.0 0.044 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF742 PF05331.6 gi|325968221|ref|YP_004244413.1| - 0.027 14.0 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) MarR_2 PF12802.2 gi|325968221|ref|YP_004244413.1| - 0.029 14.0 0.1 0.34 10.6 0.0 2.2 2 0 0 2 2 2 0 MarR family N6_Mtase PF02384.11 gi|325968221|ref|YP_004244413.1| - 0.029 13.4 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase HTH_45 PF14947.1 gi|325968221|ref|YP_004244413.1| - 0.046 13.5 0.1 0.091 12.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Methyltransf_11 PF08241.7 gi|325968221|ref|YP_004244413.1| - 0.047 14.1 0.0 0.073 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HTH_Crp_2 PF13545.1 gi|325968221|ref|YP_004244413.1| - 0.07 12.9 0.1 0.16 11.7 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Methyltransf_2 PF00891.13 gi|325968221|ref|YP_004244413.1| - 0.077 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_8 PF05148.10 gi|325968221|ref|YP_004244413.1| - 0.086 12.4 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase DUF3969 PF13108.1 gi|325968222|ref|YP_004244414.1| - 0.7 9.5 5.7 1.5 8.5 0.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3969) Peptidase_M48 PF01435.13 gi|325968223|ref|YP_004244415.1| - 2.8e-20 72.8 0.0 4.3e-20 72.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_U49 PF10463.4 gi|325968223|ref|YP_004244415.1| - 0.14 11.9 0.3 20 4.8 0.0 2.5 2 1 0 2 2 2 0 Peptidase U49 DUF3188 PF11384.3 gi|325968223|ref|YP_004244415.1| - 0.75 9.4 9.8 0.061 12.8 1.6 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3188) DUF4029 PF13221.1 gi|325968223|ref|YP_004244415.1| - 8.8 6.7 15.1 13 6.2 3.9 3.2 2 1 0 3 3 3 0 Protein of unknown function (DUF4029) RloB PF13707.1 gi|325968224|ref|YP_004244416.1| - 0.078 12.6 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 RloB-like protein AAA_10 PF12846.2 gi|325968225|ref|YP_004244417.1| - 8.1e-11 41.9 0.1 0.00016 21.1 0.0 2.4 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|325968225|ref|YP_004244417.1| - 2.2e-09 37.4 1.9 3.8e-09 36.7 0.0 2.2 2 1 0 2 2 2 1 Domain of unknown function DUF87 Arch_ATPase PF01637.13 gi|325968225|ref|YP_004244417.1| - 0.00087 19.0 1.3 0.048 13.3 0.9 2.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|325968225|ref|YP_004244417.1| - 0.015 15.4 0.3 2.3 8.3 0.2 2.5 1 1 0 1 1 1 0 AAA domain GP41 PF00517.12 gi|325968225|ref|YP_004244417.1| - 0.053 13.0 0.1 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 Retroviral envelope protein PspB PF06667.7 gi|325968225|ref|YP_004244417.1| - 0.074 13.0 1.3 0.13 12.2 0.2 1.9 2 0 0 2 2 2 0 Phage shock protein B FtsK_SpoIIIE PF01580.13 gi|325968225|ref|YP_004244417.1| - 0.1 12.0 0.1 0.32 10.4 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family Toxin-deaminase PF14424.1 gi|325968225|ref|YP_004244417.1| - 0.14 12.1 1.3 0.28 11.1 0.9 1.5 1 0 0 1 1 1 0 The BURPS668_1122 family of deaminases Helicase_C_2 PF13307.1 gi|325968226|ref|YP_004244418.1| - 2.7e-20 73.0 0.0 8.2e-20 71.4 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|325968226|ref|YP_004244418.1| - 2.2e-06 27.1 1.5 9.2e-06 25.1 1.0 1.9 1 1 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|325968226|ref|YP_004244418.1| - 0.00058 19.5 0.0 0.0021 17.7 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain DEAD PF00270.24 gi|325968226|ref|YP_004244418.1| - 0.0031 17.0 0.0 0.041 13.3 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|325968226|ref|YP_004244418.1| - 0.055 12.7 0.0 0.099 11.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.1 gi|325968226|ref|YP_004244418.1| - 0.065 13.3 0.0 4.4 7.4 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|325968226|ref|YP_004244418.1| - 0.11 11.9 0.0 1.5 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.10 gi|325968226|ref|YP_004244418.1| - 0.16 10.8 0.0 0.3 9.9 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_30 PF13604.1 gi|325968226|ref|YP_004244418.1| - 0.18 11.3 0.0 0.29 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain MIF4G PF02854.14 gi|325968227|ref|YP_004244419.1| - 0.023 14.1 0.4 0.033 13.6 0.3 1.2 1 0 0 1 1 1 0 MIF4G domain FANCI_S1 PF14675.1 gi|325968227|ref|YP_004244419.1| - 0.08 12.2 0.2 0.12 11.7 0.1 1.4 2 0 0 2 2 2 0 FANCI solenoid 1 Mad3_BUB1_I PF08311.7 gi|325968227|ref|YP_004244419.1| - 0.099 12.4 1.1 0.099 12.4 0.1 1.5 2 0 0 2 2 2 0 Mad3/BUB1 homology region 1 TatD_DNase PF01026.16 gi|325968228|ref|YP_004244420.1| - 1.3e-44 152.3 0.0 1.6e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase DUF1730 PF08331.5 gi|325968228|ref|YP_004244420.1| - 0.047 13.3 0.0 12 5.6 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1730) zf-ISL3 PF14690.1 gi|325968229|ref|YP_004244421.1| - 0.15 12.1 0.1 0.15 12.1 0.1 2.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Auto_anti-p27 PF06677.7 gi|325968229|ref|YP_004244421.1| - 0.24 11.2 3.7 0.55 10.0 0.4 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) AAA_assoc_C PF09821.4 gi|325968230|ref|YP_004244422.1| - 8.5e-25 87.3 0.0 1.3e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 C-terminal AAA-associated domain RE_AlwI PF09491.5 gi|325968230|ref|YP_004244422.1| - 0.0045 15.5 0.0 0.0055 15.2 0.0 1.2 1 0 0 1 1 1 1 AlwI restriction endonuclease HemN_C PF06969.11 gi|325968230|ref|YP_004244422.1| - 0.059 13.4 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 HemN C-terminal domain HTH_45 PF14947.1 gi|325968230|ref|YP_004244422.1| - 0.13 12.0 0.0 0.38 10.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix TyeA PF09059.5 gi|325968231|ref|YP_004244423.1| - 0.014 15.3 0.2 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 TyeA UBN_AB PF14075.1 gi|325968231|ref|YP_004244423.1| - 0.1 12.2 0.0 0.15 11.7 0.0 1.3 1 1 0 1 1 1 0 Ubinuclein conserved middle domain Aldolase_2 PF10120.4 gi|325968233|ref|YP_004244425.1| - 9.8e-39 132.4 0.4 1.4e-38 131.9 0.3 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|325968233|ref|YP_004244425.1| - 7.1e-05 22.5 0.1 0.00042 20.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.1 gi|325968233|ref|YP_004244425.1| - 0.00024 20.6 0.0 0.015 14.9 0.0 2.4 1 1 1 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|325968233|ref|YP_004244425.1| - 0.0023 17.2 0.0 0.0077 15.6 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_7 PF02796.10 gi|325968233|ref|YP_004244425.1| - 0.0099 15.7 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_37 PF13744.1 gi|325968233|ref|YP_004244425.1| - 0.013 15.2 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|325968233|ref|YP_004244425.1| - 0.016 15.2 0.0 0.037 14.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|325968233|ref|YP_004244425.1| - 0.063 13.4 0.3 2.4 8.4 0.0 2.9 2 1 1 3 3 3 0 Cro/C1-type HTH DNA-binding domain RepB PF07506.6 gi|325968233|ref|YP_004244425.1| - 0.081 12.7 0.0 0.27 11.0 0.0 1.7 1 1 1 2 2 2 0 RepB plasmid partitioning protein RimK PF08443.6 gi|325968234|ref|YP_004244426.1| - 1.8e-41 141.7 0.0 2.2e-41 141.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|325968234|ref|YP_004244426.1| - 3.4e-14 52.3 0.0 5e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325968234|ref|YP_004244426.1| - 1.7e-09 37.7 0.0 2.7e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|325968234|ref|YP_004244426.1| - 2.4e-06 27.4 0.0 8.4e-06 25.7 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|325968234|ref|YP_004244426.1| - 9.4e-06 24.5 0.0 0.00011 21.0 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon UbiD PF01977.11 gi|325968235|ref|YP_004244427.1| - 1.8e-104 349.4 0.0 2e-104 349.2 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MR_MLE_C PF13378.1 gi|325968236|ref|YP_004244428.1| - 1.6e-26 92.4 0.0 2.7e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|325968236|ref|YP_004244428.1| - 5.1e-22 78.1 0.0 1.2e-21 77.0 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|325968236|ref|YP_004244428.1| - 1.9e-13 50.4 0.0 3.5e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF2798 PF11391.3 gi|325968236|ref|YP_004244428.1| - 0.19 11.5 0.5 0.4 10.4 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2798) Ribosomal_S27 PF01599.14 gi|325968237|ref|YP_004244429.1| - 3.8e-09 36.2 1.0 5e-09 35.8 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|325968237|ref|YP_004244429.1| - 0.0001 22.0 1.7 0.00015 21.4 1.2 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|325968237|ref|YP_004244429.1| - 0.00017 21.1 0.3 0.00019 20.9 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|325968237|ref|YP_004244429.1| - 0.0015 18.2 0.2 0.3 10.9 0.0 2.1 2 0 0 2 2 2 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|325968237|ref|YP_004244429.1| - 0.0023 17.0 0.4 0.71 9.1 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain GFA PF04828.9 gi|325968237|ref|YP_004244429.1| - 0.0025 17.7 1.4 0.95 9.4 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme ADK_lid PF05191.9 gi|325968237|ref|YP_004244429.1| - 0.0026 17.3 5.0 0.082 12.5 0.3 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid YhfH PF14149.1 gi|325968237|ref|YP_004244429.1| - 0.0028 17.3 0.0 0.33 10.7 0.0 2.2 2 0 0 2 2 2 1 YhfH-like protein DZR PF12773.2 gi|325968237|ref|YP_004244429.1| - 0.0046 16.7 0.2 0.0071 16.1 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|325968237|ref|YP_004244429.1| - 0.0058 15.9 2.1 0.24 10.7 0.1 2.7 2 1 0 2 2 2 1 TFIIB zinc-binding IBR PF01485.16 gi|325968237|ref|YP_004244429.1| - 0.011 15.6 0.2 0.012 15.4 0.2 1.1 1 0 0 1 1 1 0 IBR domain Ribosomal_L37e PF01907.14 gi|325968237|ref|YP_004244429.1| - 0.019 14.7 1.0 0.032 14.0 0.7 1.5 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ISL3 PF14690.1 gi|325968237|ref|YP_004244429.1| - 0.023 14.7 5.6 0.15 12.1 0.5 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.6 gi|325968237|ref|YP_004244429.1| - 0.023 14.1 3.1 0.32 10.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|325968237|ref|YP_004244429.1| - 0.039 13.6 0.4 0.098 12.3 0.3 1.6 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.1 gi|325968237|ref|YP_004244429.1| - 0.048 13.3 5.9 0.25 11.0 3.8 2.1 1 1 0 1 1 1 0 Nudix N-terminal A2L_zn_ribbon PF08792.5 gi|325968237|ref|YP_004244429.1| - 0.052 13.0 0.5 8.3 6.0 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|325968237|ref|YP_004244429.1| - 0.069 12.6 3.2 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2082 PF09855.4 gi|325968237|ref|YP_004244429.1| - 0.08 12.8 0.6 3.1 7.7 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-C4_Topoisom PF01396.14 gi|325968237|ref|YP_004244429.1| - 0.081 12.4 0.3 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF2387 PF09526.5 gi|325968237|ref|YP_004244429.1| - 0.1 12.5 0.6 0.17 11.7 0.4 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Baculo_ME53 PF06061.6 gi|325968237|ref|YP_004244429.1| - 0.11 11.5 0.4 0.11 11.5 0.3 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 DUF35_N PF12172.3 gi|325968237|ref|YP_004244429.1| - 0.13 12.1 1.2 4 7.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.1 gi|325968237|ref|YP_004244429.1| - 0.17 11.5 2.3 9.9 5.8 0.2 2.6 3 0 0 3 3 3 0 zinc-ribbon domain DUF2296 PF10058.4 gi|325968237|ref|YP_004244429.1| - 0.18 11.5 1.7 0.39 10.5 1.2 1.6 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-CCHC_4 PF14392.1 gi|325968237|ref|YP_004244429.1| - 0.23 11.1 5.6 0.29 10.8 1.2 2.5 2 1 0 2 2 2 0 Zinc knuckle zf-C2H2_4 PF13894.1 gi|325968237|ref|YP_004244429.1| - 0.26 11.7 1.2 18 5.9 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF1936 PF09151.5 gi|325968237|ref|YP_004244429.1| - 0.31 10.5 4.1 14 5.3 0.6 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF1936) FeS PF04060.8 gi|325968237|ref|YP_004244429.1| - 0.39 10.3 0.2 0.39 10.3 0.1 1.7 2 0 0 2 2 2 0 Putative Fe-S cluster Rpr2 PF04032.11 gi|325968237|ref|YP_004244429.1| - 0.41 10.5 2.2 1.4 8.8 0.1 2.1 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zinc_ribbon_4 PF13717.1 gi|325968237|ref|YP_004244429.1| - 0.66 9.7 3.6 15 5.4 0.3 2.7 3 0 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|325968237|ref|YP_004244429.1| - 1.4 9.2 5.8 9.8 6.5 4.3 1.9 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF4147 PF13660.1 gi|325968238|ref|YP_004244430.1| - 6.3e-07 28.7 0.0 6.8e-07 28.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) Glycos_transf_1 PF00534.15 gi|325968239|ref|YP_004244431.1| - 3.2e-44 150.3 0.0 4.8e-44 149.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|325968239|ref|YP_004244431.1| - 2.4e-21 76.5 0.0 5e-21 75.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.6 gi|325968239|ref|YP_004244431.1| - 2.1e-19 70.0 0.8 2.4e-10 40.3 0.1 2.4 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|325968239|ref|YP_004244431.1| - 5.3e-16 58.9 0.1 1.6e-15 57.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325968239|ref|YP_004244431.1| - 5e-14 52.4 0.2 1.1e-13 51.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|325968239|ref|YP_004244431.1| - 1.5e-12 47.6 0.0 3e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|325968239|ref|YP_004244431.1| - 5.3e-05 23.0 0.1 0.00012 21.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glycogen_syn PF05693.8 gi|325968239|ref|YP_004244431.1| - 0.048 11.8 0.1 3.3 5.8 0.0 2.7 2 1 0 2 2 2 0 Glycogen synthase AAA_18 PF13238.1 gi|325968240|ref|YP_004244432.1| - 5.7e-12 46.0 0.0 7.2e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325968240|ref|YP_004244432.1| - 1.4e-07 32.3 0.2 2.5e-07 31.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|325968240|ref|YP_004244432.1| - 0.0009 19.1 0.0 0.0018 18.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|325968240|ref|YP_004244432.1| - 0.0035 16.7 0.3 0.57 9.5 0.0 2.4 1 1 2 3 3 3 2 Thymidylate kinase Zeta_toxin PF06414.7 gi|325968240|ref|YP_004244432.1| - 0.045 12.8 0.0 0.07 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.1 gi|325968240|ref|YP_004244432.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|325968240|ref|YP_004244432.1| - 0.12 12.3 0.0 0.37 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain DJ-1_PfpI PF01965.19 gi|325968241|ref|YP_004244433.1| - 3.2e-06 26.6 0.0 5.7e-06 25.8 0.0 1.4 1 1 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|325968241|ref|YP_004244433.1| - 0.0067 15.7 0.0 0.01 15.0 0.0 1.4 1 1 0 1 1 1 1 Putative amidotransferase G3P_antiterm PF04309.7 gi|325968241|ref|YP_004244433.1| - 0.1 11.6 0.5 0.58 9.1 0.1 2.3 2 1 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Fe-ADH_2 PF13685.1 gi|325968242|ref|YP_004244434.1| - 5.1e-54 183.2 0.0 6.3e-54 182.9 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|325968242|ref|YP_004244434.1| - 4.6e-22 78.1 0.0 1.8e-21 76.2 0.0 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|325968242|ref|YP_004244434.1| - 3.3e-08 32.7 0.2 2.1e-07 30.1 0.1 2.0 1 1 0 1 1 1 1 3-dehydroquinate synthase DUF1907 PF08925.6 gi|325968242|ref|YP_004244434.1| - 0.18 10.8 0.0 0.3 10.1 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1907) PHO4 PF01384.15 gi|325968243|ref|YP_004244435.1| - 6.2e-23 80.9 34.3 1.5e-22 79.6 23.7 1.7 1 1 0 1 1 1 1 Phosphate transporter family Thi4 PF01946.12 gi|325968244|ref|YP_004244436.1| - 7.1e-77 257.5 0.8 8.3e-77 257.3 0.5 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|325968244|ref|YP_004244436.1| - 2.1e-15 56.5 0.8 4.4e-09 35.7 1.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|325968244|ref|YP_004244436.1| - 1.7e-10 40.5 0.2 2.4e-10 40.0 0.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|325968244|ref|YP_004244436.1| - 6.4e-10 38.9 0.2 1.2e-09 38.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|325968244|ref|YP_004244436.1| - 1.6e-09 37.1 4.2 8.3e-07 28.1 0.6 2.4 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|325968244|ref|YP_004244436.1| - 2.1e-07 31.1 0.2 7.2e-07 29.4 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|325968244|ref|YP_004244436.1| - 3.7e-07 29.5 0.1 5.4e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|325968244|ref|YP_004244436.1| - 2.2e-06 27.7 0.5 3.3e-06 27.1 0.3 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|325968244|ref|YP_004244436.1| - 4.1e-05 22.2 1.2 7.6e-05 21.3 0.8 1.4 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|325968244|ref|YP_004244436.1| - 0.00019 20.4 0.9 0.00036 19.5 0.7 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|325968244|ref|YP_004244436.1| - 0.00036 20.8 0.9 0.0018 18.6 0.3 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|325968244|ref|YP_004244436.1| - 0.0015 17.6 0.3 0.0028 16.7 0.2 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.15 gi|325968244|ref|YP_004244436.1| - 0.0016 18.5 0.0 0.0031 17.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ThiF PF00899.16 gi|325968244|ref|YP_004244436.1| - 0.003 17.3 0.1 0.008 16.0 0.1 1.7 1 0 0 1 1 1 1 ThiF family Lycopene_cycl PF05834.7 gi|325968244|ref|YP_004244436.1| - 0.0048 15.8 0.2 0.056 12.3 0.1 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|325968244|ref|YP_004244436.1| - 0.015 13.9 0.1 0.031 12.8 0.1 1.4 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|325968244|ref|YP_004244436.1| - 0.042 13.6 0.4 0.18 11.6 0.1 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|325968244|ref|YP_004244436.1| - 0.1 12.2 0.1 0.19 11.3 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thioredoxin PF00085.15 gi|325968245|ref|YP_004244437.1| - 2.5e-23 81.7 0.0 3.4e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|325968245|ref|YP_004244437.1| - 9.2e-07 29.0 0.1 0.00024 21.2 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|325968245|ref|YP_004244437.1| - 3.1e-06 27.1 0.1 0.0017 18.3 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|325968245|ref|YP_004244437.1| - 0.00084 19.0 0.0 0.0022 17.7 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|325968245|ref|YP_004244437.1| - 0.022 14.3 0.1 0.027 14.0 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin Redoxin PF08534.5 gi|325968245|ref|YP_004244437.1| - 0.096 12.2 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Redoxin Thioredoxin_5 PF13743.1 gi|325968245|ref|YP_004244437.1| - 0.15 11.6 0.7 2.5 7.6 0.2 2.2 2 0 0 2 2 2 0 Thioredoxin Aminotran_3 PF00202.16 gi|325968246|ref|YP_004244438.1| - 6.3e-84 281.7 0.0 7.5e-84 281.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|325968246|ref|YP_004244438.1| - 0.053 12.4 0.0 0.064 12.2 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Succ_CoA_lig PF13607.1 gi|325968247|ref|YP_004244439.1| - 5e-47 158.9 0.6 1.5e-45 154.1 0.1 3.0 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|325968247|ref|YP_004244439.1| - 3.8e-23 81.8 0.6 1.4e-22 80.0 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|325968247|ref|YP_004244439.1| - 5e-17 62.1 0.6 1.8e-16 60.3 0.4 2.1 1 0 0 1 1 1 1 CoA binding domain ADH_zinc_N PF00107.21 gi|325968247|ref|YP_004244439.1| - 0.0056 16.2 0.0 0.016 14.7 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Semialdhyde_dh PF01118.19 gi|325968247|ref|YP_004244439.1| - 0.0069 16.6 0.2 0.32 11.2 0.1 2.9 3 1 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain Peripla_BP_3 PF13377.1 gi|325968247|ref|YP_004244439.1| - 0.0096 15.9 0.0 2.6 8.0 0.0 2.5 2 0 0 2 2 2 2 Periplasmic binding protein-like domain NAD_Gly3P_dh_N PF01210.18 gi|325968247|ref|YP_004244439.1| - 0.061 13.0 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATP-grasp_5 PF13549.1 gi|325968248|ref|YP_004244440.1| - 6.3e-78 261.0 0.0 7.1e-78 260.8 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325968248|ref|YP_004244440.1| - 5.4e-07 29.5 0.0 7.4e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|325968248|ref|YP_004244440.1| - 1.3e-05 24.7 0.0 2.3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.5 gi|325968248|ref|YP_004244440.1| - 7.5e-05 22.2 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|325968248|ref|YP_004244440.1| - 0.00092 18.5 0.0 0.0018 17.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|325968248|ref|YP_004244440.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peptidase_M48 PF01435.13 gi|325968249|ref|YP_004244441.1| - 3.1e-31 108.6 0.0 4.3e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Amastin PF07344.6 gi|325968249|ref|YP_004244441.1| - 0.0013 18.3 0.6 0.0013 18.3 0.4 1.8 2 0 0 2 2 2 1 Amastin surface glycoprotein Peptidase_M56 PF05569.6 gi|325968249|ref|YP_004244441.1| - 0.029 13.3 0.0 0.098 11.6 0.0 1.9 2 0 0 2 2 2 0 BlaR1 peptidase M56 Neurensin PF14927.1 gi|325968249|ref|YP_004244441.1| - 2.1 7.7 5.3 0.25 10.7 0.1 2.0 2 0 0 2 2 2 0 Neurensin DUF4131 PF13567.1 gi|325968249|ref|YP_004244441.1| - 3.4 7.0 9.6 6.7 6.0 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1152 PF06626.7 gi|325968252|ref|YP_004244444.1| - 7.9e-88 294.3 1.3 9.6e-88 294.1 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) YobH PF13996.1 gi|325968253|ref|YP_004244445.1| - 0.055 13.3 0.4 0.055 13.3 0.3 1.8 2 0 0 2 2 2 0 YobH-like protein DUF106 PF01956.11 gi|325968253|ref|YP_004244445.1| - 0.13 11.7 2.9 0.17 11.3 0.6 2.1 2 1 0 2 2 2 0 Integral membrane protein DUF106 FtsH_ext PF06480.10 gi|325968253|ref|YP_004244445.1| - 1 9.5 5.2 15 5.7 0.1 2.9 2 2 0 2 2 2 0 FtsH Extracellular Phage_connect_1 PF05135.8 gi|325968253|ref|YP_004244445.1| - 2.6 8.2 7.4 1.2 9.3 1.3 2.7 3 0 0 3 3 3 0 Phage gp6-like head-tail connector protein Sarcoglycan_1 PF04790.8 gi|325968254|ref|YP_004244446.1| - 0.14 11.3 1.6 0.15 11.1 1.1 1.1 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein Baculo_11_kDa PF06143.6 gi|325968255|ref|YP_004244447.1| - 0.58 9.5 4.8 0.66 9.3 3.3 1.1 1 0 0 1 1 1 0 Baculovirus 11 kDa family FeoB_C PF07664.7 gi|325968255|ref|YP_004244447.1| - 0.73 9.3 4.0 0.98 8.8 2.8 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B C terminus DUF3671 PF12420.3 gi|325968255|ref|YP_004244447.1| - 0.97 9.4 4.1 0.93 9.5 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function YrhK PF14145.1 gi|325968255|ref|YP_004244447.1| - 1 9.0 5.4 1.5 8.5 3.8 1.4 1 1 0 1 1 1 0 YrhK-like protein YdfA_immunity PF12127.3 gi|325968255|ref|YP_004244447.1| - 1.7 7.4 3.8 2 7.2 2.6 1.0 1 0 0 1 1 1 0 SigmaW regulon antibacterial Sigma_reg_N PF13800.1 gi|325968255|ref|YP_004244447.1| - 3.8 7.6 7.1 3.6 7.6 4.9 1.1 1 0 0 1 1 1 0 Sigma factor regulator N-terminal Helicase_C PF00271.26 gi|325968256|ref|YP_004244448.1| - 1.4e-17 63.2 0.3 1.2e-16 60.3 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|325968256|ref|YP_004244448.1| - 1.4e-13 51.0 1.6 1.8e-08 34.4 0.6 3.3 2 1 0 2 2 2 2 Type III restriction enzyme, res subunit Helicase_C_2 PF13307.1 gi|325968256|ref|YP_004244448.1| - 6.1e-05 23.0 0.5 0.0045 16.9 0.0 2.6 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD PF00270.24 gi|325968256|ref|YP_004244448.1| - 0.00028 20.4 0.1 0.0012 18.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Intein_splicing PF14890.1 gi|325968256|ref|YP_004244448.1| - 0.03 13.2 0.7 0.093 11.6 0.1 2.0 2 0 0 2 2 2 0 Intein splicing domain Hint_2 PF13403.1 gi|325968256|ref|YP_004244448.1| - 0.11 12.4 0.0 0.61 10.0 0.0 2.2 2 0 0 2 2 2 0 Hint domain bact-PGI_C PF10432.4 gi|325968258|ref|YP_004244450.1| - 2.7e-27 95.3 0.0 4e-27 94.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|325968258|ref|YP_004244450.1| - 6.3e-07 29.0 0.2 1.6e-05 24.4 0.0 2.7 3 0 0 3 3 3 1 SIS domain SIS_2 PF13580.1 gi|325968258|ref|YP_004244450.1| - 0.0032 17.1 0.0 0.024 14.3 0.0 2.2 2 0 0 2 2 2 1 SIS domain Aminotran_4 PF01063.14 gi|325968259|ref|YP_004244451.1| - 1.2e-43 149.2 0.0 1.4e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Fe_dep_repr_C PF02742.10 gi|325968260|ref|YP_004244452.1| - 1e-18 66.7 0.0 2.4e-18 65.5 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain TrmB PF01978.14 gi|325968260|ref|YP_004244452.1| - 8.5e-06 25.3 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.11 gi|325968260|ref|YP_004244452.1| - 0.0013 18.7 0.0 0.069 13.2 0.0 2.2 2 0 0 2 2 2 1 HemN C-terminal domain LexA_DNA_bind PF01726.11 gi|325968260|ref|YP_004244452.1| - 0.0016 17.9 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.5 gi|325968260|ref|YP_004244452.1| - 0.002 17.6 0.0 0.0061 16.1 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|325968260|ref|YP_004244452.1| - 0.0025 17.5 0.0 0.0036 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|325968260|ref|YP_004244452.1| - 0.0041 17.4 0.0 0.0069 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|325968260|ref|YP_004244452.1| - 0.0043 16.9 0.1 0.0085 16.0 0.0 1.5 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain MotA_activ PF09114.5 gi|325968260|ref|YP_004244452.1| - 0.0074 16.0 0.3 0.014 15.1 0.1 1.6 2 0 0 2 2 2 1 Transcription factor MotA, activation domain MarR_2 PF12802.2 gi|325968260|ref|YP_004244452.1| - 0.017 14.7 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|325968260|ref|YP_004244452.1| - 0.044 13.5 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|325968260|ref|YP_004244452.1| - 0.055 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RuvB_C PF05491.8 gi|325968260|ref|YP_004244452.1| - 0.08 12.5 0.0 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus HTH_22 PF13309.1 gi|325968260|ref|YP_004244452.1| - 0.28 10.9 1.0 0.65 9.7 0.1 2.2 2 1 0 2 2 2 0 HTH domain Nramp PF01566.13 gi|325968261|ref|YP_004244453.1| - 1.4e-40 139.1 30.9 1.8e-40 138.8 21.4 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein MFS_1 PF07690.11 gi|325968262|ref|YP_004244454.1| - 1.3e-25 89.9 46.5 2.6e-16 59.3 12.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.8 gi|325968262|ref|YP_004244454.1| - 0.008 14.3 28.0 0.12 10.4 19.4 2.0 1 1 0 1 1 1 1 Transmembrane secretion effector Seadorna_Vp10 PF07322.6 gi|325968262|ref|YP_004244454.1| - 0.013 14.7 0.1 0.028 13.6 0.1 1.5 1 0 0 1 1 1 0 Seadornavirus Vp10 Folate_carrier PF01770.13 gi|325968262|ref|YP_004244454.1| - 0.087 11.3 17.6 0.13 10.7 0.9 2.2 2 0 0 2 2 2 0 Reduced folate carrier Peptidase_S8 PF00082.17 gi|325968263|ref|YP_004244455.1| - 9.4e-06 24.9 0.0 1.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Subtilase family Pro-kuma_activ PF09286.6 gi|325968263|ref|YP_004244455.1| - 0.0001 22.3 0.0 0.00021 21.3 0.0 1.5 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain MarC PF01914.12 gi|325968264|ref|YP_004244456.1| - 2.2e-33 115.1 21.8 2.7e-33 114.7 15.1 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Antitoxin-MazE PF04014.13 gi|325968265|ref|YP_004244457.1| - 5.6e-08 32.3 0.3 0.00027 20.5 0.0 2.5 2 1 0 2 2 2 2 Antidote-toxin recognition MazE zf-RanBP PF00641.13 gi|325968266|ref|YP_004244458.1| - 2.6e-06 26.3 2.6 3.1e-06 26.1 1.8 1.1 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|325968266|ref|YP_004244458.1| - 0.00031 19.8 2.5 0.00044 19.3 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_L40e PF01020.12 gi|325968266|ref|YP_004244458.1| - 0.00058 19.3 4.8 0.00062 19.3 3.4 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|325968266|ref|YP_004244458.1| - 0.00096 18.9 1.7 0.0013 18.5 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|325968266|ref|YP_004244458.1| - 0.0064 15.9 3.7 0.0095 15.3 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|325968266|ref|YP_004244458.1| - 0.025 14.2 0.3 0.028 14.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-Sec23_Sec24 PF04810.10 gi|325968266|ref|YP_004244458.1| - 0.32 10.5 5.3 0.41 10.2 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger PHD_2 PF13831.1 gi|325968266|ref|YP_004244458.1| - 0.84 9.0 3.8 4 6.8 0.2 2.1 2 0 0 2 2 2 0 PHD-finger DNA_RNApol_7kD PF03604.8 gi|325968266|ref|YP_004244458.1| - 1.6 8.2 7.2 43 3.6 0.4 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|325968266|ref|YP_004244458.1| - 2.5 7.8 6.6 3.1 7.5 0.2 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Phos_pyr_kin PF08543.7 gi|325968268|ref|YP_004244460.1| - 6.2e-94 313.7 0.0 8e-94 313.4 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|325968268|ref|YP_004244460.1| - 3.3e-67 225.0 0.0 5.2e-67 224.4 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|325968268|ref|YP_004244460.1| - 4.3e-14 52.3 0.0 6.4e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Nif11 PF07862.6 gi|325968268|ref|YP_004244460.1| - 0.1 12.5 0.0 0.8 9.7 0.0 2.3 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function Baculo_PEP_C PF04513.7 gi|325968269|ref|YP_004244461.1| - 0.032 14.0 4.7 0.039 13.7 3.3 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Tape_meas_lam_C PF09718.5 gi|325968269|ref|YP_004244461.1| - 0.1 12.5 1.4 0.16 11.9 0.9 1.3 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) Rab5ip PF07019.7 gi|325968269|ref|YP_004244461.1| - 0.19 11.8 4.1 0.45 10.6 1.4 2.2 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) TrbC PF04956.8 gi|325968269|ref|YP_004244461.1| - 0.39 10.7 9.0 0.29 11.1 0.3 2.4 1 1 0 2 2 2 0 TrbC/VIRB2 family DUF2946 PF11162.3 gi|325968269|ref|YP_004244461.1| - 0.62 10.2 2.0 6.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2946) SRP19 PF01922.12 gi|325968271|ref|YP_004244463.1| - 1.8e-18 66.8 0.0 2.1e-18 66.6 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.17 gi|325968272|ref|YP_004244464.1| - 2.1e-29 102.2 1.0 2.4e-29 102.1 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Fer4_8 PF13183.1 gi|325968273|ref|YP_004244465.1| - 6.8e-12 45.2 1.9 6.8e-12 45.2 1.3 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968273|ref|YP_004244465.1| - 3.8e-10 39.9 1.6 3.8e-10 39.9 1.1 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|325968273|ref|YP_004244465.1| - 1.8e-09 37.4 0.3 7e-09 35.5 0.2 2.0 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_7 PF12838.2 gi|325968273|ref|YP_004244465.1| - 5.1e-09 36.3 2.5 5.1e-09 36.3 1.7 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968273|ref|YP_004244465.1| - 2.2e-08 34.4 7.5 6.4e-05 23.3 0.0 2.8 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968273|ref|YP_004244465.1| - 2.4e-07 30.0 12.1 5.3e-05 22.6 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325968273|ref|YP_004244465.1| - 6e-07 29.1 4.4 6e-07 29.1 3.0 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325968273|ref|YP_004244465.1| - 2.4e-05 23.9 17.4 0.00031 20.4 0.8 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|325968273|ref|YP_004244465.1| - 4.5e-05 23.6 17.0 0.00034 20.8 6.0 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325968273|ref|YP_004244465.1| - 4.7e-05 23.0 16.4 0.00018 21.2 1.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|325968273|ref|YP_004244465.1| - 0.001 19.2 17.9 0.023 15.0 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968273|ref|YP_004244465.1| - 0.0012 18.6 10.4 0.0098 15.7 0.2 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325968273|ref|YP_004244465.1| - 0.006 17.1 3.2 0.26 11.8 0.3 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|325968273|ref|YP_004244465.1| - 0.22 12.2 16.3 0.13 13.0 8.0 2.6 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|325968273|ref|YP_004244465.1| - 1.7 9.4 27.9 0.15 12.6 4.7 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|325968273|ref|YP_004244465.1| - 1.9 8.9 9.0 4 7.8 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Ta0938 PF11494.3 gi|325968275|ref|YP_004244467.1| - 4.3e-14 52.4 2.1 1.9e-09 37.5 0.1 2.1 1 1 1 2 2 2 2 Ta0938 DUF2318 PF10080.4 gi|325968275|ref|YP_004244467.1| - 0.064 13.0 1.5 1.1 9.1 0.3 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) GCC2_GCC3 PF07699.8 gi|325968275|ref|YP_004244467.1| - 0.47 10.0 2.7 1.8 8.1 0.2 2.3 1 1 1 2 2 2 0 GCC2 and GCC3 Zn_ribbon_recom PF13408.1 gi|325968275|ref|YP_004244467.1| - 1.1 9.6 6.2 0.15 12.3 1.3 1.8 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S8 PF00410.14 gi|325968276|ref|YP_004244468.1| - 2e-25 89.1 0.0 2.5e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Peptidase_S9 PF00326.16 gi|325968277|ref|YP_004244469.1| - 4.1e-56 189.5 0.0 6.3e-56 188.9 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|325968277|ref|YP_004244469.1| - 1e-10 41.5 0.0 2.7e-10 40.1 0.0 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|325968277|ref|YP_004244469.1| - 2e-08 33.9 0.0 0.00059 19.3 0.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|325968277|ref|YP_004244469.1| - 3.6e-07 29.0 0.1 2.4e-05 22.9 0.1 2.3 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_6 PF12697.2 gi|325968277|ref|YP_004244469.1| - 1e-06 28.8 0.0 3.4e-06 27.1 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family DPPIV_N PF00930.16 gi|325968277|ref|YP_004244469.1| - 0.00072 18.2 0.1 0.0019 16.8 0.0 1.7 2 0 0 2 2 2 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region DLH PF01738.13 gi|325968277|ref|YP_004244469.1| - 0.0037 16.5 0.0 0.016 14.5 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family PGAP1 PF07819.8 gi|325968277|ref|YP_004244469.1| - 0.014 15.0 0.0 0.026 14.0 0.0 1.4 1 0 0 1 1 1 0 PGAP1-like protein FSH1 PF03959.8 gi|325968277|ref|YP_004244469.1| - 0.15 11.4 0.0 0.3 10.5 0.0 1.5 1 0 0 1 1 1 0 Serine hydrolase (FSH1) STE3 PF02076.10 gi|325968278|ref|YP_004244470.1| - 0.39 9.7 10.9 0.47 9.4 7.6 1.0 1 0 0 1 1 1 0 Pheromone A receptor Ribosomal_S28e PF01200.13 gi|325968279|ref|YP_004244471.1| - 1.7e-30 104.5 3.2 1.9e-30 104.4 2.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e NOP5NT PF08156.8 gi|325968279|ref|YP_004244471.1| - 0.15 12.2 0.0 0.34 11.1 0.0 1.5 2 0 0 2 2 2 0 NOP5NT (NUC127) domain KOW PF00467.24 gi|325968279|ref|YP_004244471.1| - 0.28 10.9 2.4 0.86 9.4 0.1 2.8 4 0 0 4 4 4 0 KOW motif Ribosomal_L7Ae PF01248.21 gi|325968280|ref|YP_004244472.1| - 2.6e-30 103.7 0.1 4e-30 103.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|325968280|ref|YP_004244472.1| - 0.002 17.8 0.1 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.6 gi|325968280|ref|YP_004244472.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 RNase P subunit Pop3 LpxD PF04613.9 gi|325968280|ref|YP_004244472.1| - 0.071 12.6 0.4 0.19 11.2 0.1 1.9 2 1 0 2 2 2 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Ribosomal_S19 PF00203.16 gi|325968281|ref|YP_004244473.1| - 1.9e-26 91.4 0.2 3.5e-26 90.6 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S19 AMP-binding PF00501.23 gi|325968282|ref|YP_004244474.1| - 3.4e-52 177.2 0.0 4.4e-52 176.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325968282|ref|YP_004244474.1| - 0.00033 21.5 0.5 0.0022 18.9 0.0 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain 4HBT PF03061.17 gi|325968284|ref|YP_004244476.1| - 4.3e-12 45.9 0.2 1.6e-11 44.1 0.1 1.8 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.1 gi|325968284|ref|YP_004244476.1| - 3.5e-05 23.8 0.3 4.3e-05 23.4 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|325968284|ref|YP_004244476.1| - 0.00061 19.6 0.0 0.00076 19.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Mistic PF11458.3 gi|325968284|ref|YP_004244476.1| - 0.071 13.5 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Membrane-integrating protein Mistic DUF1256 PF06866.6 gi|325968284|ref|YP_004244476.1| - 0.077 12.1 0.1 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1256) DUF3806 PF12713.2 gi|325968284|ref|YP_004244476.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) Glyco_hydro_38 PF01074.17 gi|325968285|ref|YP_004244477.1| - 1.4e-66 224.5 0.0 2e-66 224.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.8 gi|325968285|ref|YP_004244477.1| - 5.4e-52 177.1 0.0 7.3e-52 176.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.6 gi|325968285|ref|YP_004244477.1| - 1.1e-11 44.8 0.0 2.1e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Alpha mannosidase, middle domain OrfB_IS605 PF01385.14 gi|325968286|ref|YP_004244478.1| - 3.3e-73 245.8 0.7 4.3e-73 245.4 0.5 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|325968286|ref|YP_004244478.1| - 3e-18 65.2 0.1 5.6e-18 64.3 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|325968286|ref|YP_004244478.1| - 0.0021 18.1 0.0 0.0046 17.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0081) LSM PF01423.17 gi|325968287|ref|YP_004244479.1| - 2.3e-19 68.6 1.0 2.6e-19 68.5 0.7 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|325968287|ref|YP_004244479.1| - 0.021 14.7 0.0 0.03 14.2 0.0 1.3 1 0 0 1 1 1 0 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|325968288|ref|YP_004244480.1| - 1.9e-23 81.9 10.2 2.2e-23 81.8 7.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e IGFL PF14653.1 gi|325968288|ref|YP_004244480.1| - 0.0037 17.2 2.4 0.0047 16.9 1.7 1.3 1 1 0 1 1 1 1 Insulin growth factor-like family DZR PF12773.2 gi|325968288|ref|YP_004244480.1| - 0.0056 16.4 1.1 0.0074 16.0 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon Mu-like_Com PF10122.4 gi|325968288|ref|YP_004244480.1| - 0.022 13.8 0.7 0.037 13.0 0.5 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com Cys_rich_CPCC PF14206.1 gi|325968288|ref|YP_004244480.1| - 0.065 12.8 0.5 0.075 12.5 0.3 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC DUF2752 PF10825.3 gi|325968288|ref|YP_004244480.1| - 0.22 11.5 2.4 13 5.8 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-ribbon_3 PF13248.1 gi|325968288|ref|YP_004244480.1| - 0.47 9.7 6.1 4.3 6.6 4.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|325968288|ref|YP_004244480.1| - 1.1 9.1 3.2 2.8 7.8 2.3 1.6 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF35_N PF12172.3 gi|325968288|ref|YP_004244480.1| - 1.2 9.0 5.2 2.2 8.3 3.6 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|325968288|ref|YP_004244480.1| - 2.9 7.4 7.8 1.5 8.3 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|325968288|ref|YP_004244480.1| - 4.1 7.2 8.6 23 4.8 6.0 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|325968288|ref|YP_004244480.1| - 4.3 6.9 6.6 21 4.7 4.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Lactamase_B_2 PF12706.2 gi|325968289|ref|YP_004244481.1| - 0.00023 20.7 0.0 0.00029 20.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|325968289|ref|YP_004244481.1| - 0.00061 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|325968289|ref|YP_004244481.1| - 0.02 14.5 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain NOB1_Zn_bind PF08772.6 gi|325968291|ref|YP_004244483.1| - 0.022 14.5 0.1 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Lar_restr_allev PF14354.1 gi|325968291|ref|YP_004244483.1| - 0.081 13.2 1.7 0.72 10.2 0.0 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Rad50_zn_hook PF04423.9 gi|325968291|ref|YP_004244483.1| - 0.081 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2 PF00096.21 gi|325968291|ref|YP_004244483.1| - 0.084 13.2 2.9 1.4 9.3 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|325968291|ref|YP_004244483.1| - 0.11 12.8 1.1 9.1 6.8 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-4CXXC_R1 PF10497.4 gi|325968291|ref|YP_004244483.1| - 0.13 12.4 0.1 0.14 12.3 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 zf-DNA_Pol PF08996.5 gi|325968291|ref|YP_004244483.1| - 0.13 11.6 0.0 0.14 11.5 0.0 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-H2C2_2 PF13465.1 gi|325968291|ref|YP_004244483.1| - 0.22 11.8 1.6 12 6.3 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|325968291|ref|YP_004244483.1| - 0.8 9.3 2.8 1.9 8.1 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|325968291|ref|YP_004244483.1| - 1.5 8.5 5.4 2.4 7.9 0.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|325968291|ref|YP_004244483.1| - 2 8.1 5.7 5 6.8 0.2 2.5 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin PF00301.15 gi|325968291|ref|YP_004244483.1| - 2.5 8.0 4.5 35 4.3 3.1 2.0 1 1 0 1 1 1 0 Rubredoxin DUF1610 PF07754.6 gi|325968291|ref|YP_004244483.1| - 5.6 7.1 6.0 12 6.0 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF354 PF04007.7 gi|325968292|ref|YP_004244484.1| - 7.2e-54 182.8 0.0 8.3e-54 182.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Epimerase PF01370.16 gi|325968293|ref|YP_004244485.1| - 1.1e-42 146.1 0.0 1.3e-42 145.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|325968293|ref|YP_004244485.1| - 9.8e-22 77.1 0.0 1.2e-21 76.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|325968293|ref|YP_004244485.1| - 1.4e-10 40.3 0.0 3e-10 39.2 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|325968293|ref|YP_004244485.1| - 3.5e-10 39.2 0.0 1.4e-07 30.7 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|325968293|ref|YP_004244485.1| - 1.5e-05 24.0 0.0 0.0012 17.7 0.0 3.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|325968293|ref|YP_004244485.1| - 5.7e-05 23.2 0.0 0.00016 21.7 0.0 1.7 2 0 0 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|325968293|ref|YP_004244485.1| - 0.065 13.1 0.1 2.4 8.0 0.1 2.3 1 1 0 1 1 1 0 short chain dehydrogenase Glycos_transf_4 PF00953.16 gi|325968294|ref|YP_004244486.1| - 3.8e-25 88.5 24.2 3.8e-25 88.5 16.8 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 4 DUF4287 PF14117.1 gi|325968295|ref|YP_004244487.1| - 0.0045 16.6 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4287) Amidohydro_3 PF07969.6 gi|325968296|ref|YP_004244488.1| - 1.6e-16 60.5 0.0 4.8e-13 49.0 0.0 2.7 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|325968296|ref|YP_004244488.1| - 2.3e-15 57.3 0.1 2.6e-11 44.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_1 PF01979.15 gi|325968296|ref|YP_004244488.1| - 8.4e-14 51.9 0.0 2.7e-13 50.2 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|325968296|ref|YP_004244488.1| - 2.4e-08 33.6 0.0 5.3e-08 32.5 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase tRNA-synt_1c PF00749.16 gi|325968297|ref|YP_004244489.1| - 1.4e-60 204.5 0.0 2e-60 204.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|325968297|ref|YP_004244489.1| - 1e-29 103.4 0.2 2.1e-29 102.3 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain PALP PF00291.20 gi|325968298|ref|YP_004244490.1| - 2.4e-65 220.8 0.0 2.7e-65 220.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.14 gi|325968298|ref|YP_004244490.1| - 0.0014 18.2 0.0 0.0038 16.8 0.0 1.7 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|325968298|ref|YP_004244490.1| - 0.025 14.2 0.6 0.048 13.3 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|325968298|ref|YP_004244490.1| - 0.028 13.9 0.5 1.5 8.3 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|325968298|ref|YP_004244490.1| - 0.029 13.7 1.2 1.8 7.9 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|325968298|ref|YP_004244490.1| - 0.096 12.6 4.2 0.46 10.4 2.9 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.1 gi|325968298|ref|YP_004244490.1| - 0.096 12.4 0.1 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|325968298|ref|YP_004244490.1| - 0.14 11.3 1.6 12 5.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|325968298|ref|YP_004244490.1| - 0.59 9.7 4.1 4.6 6.8 2.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|325968298|ref|YP_004244490.1| - 0.86 9.4 3.4 1.8 8.4 2.4 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Aminotran_1_2 PF00155.16 gi|325968299|ref|YP_004244491.1| - 3.2e-51 174.3 0.0 3.8e-51 174.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|325968299|ref|YP_004244491.1| - 9e-05 21.6 0.0 0.00015 20.9 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|325968299|ref|YP_004244491.1| - 0.0062 14.8 0.0 0.0089 14.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.8 gi|325968299|ref|YP_004244491.1| - 0.017 13.7 0.0 0.024 13.2 0.0 1.2 1 0 0 1 1 1 0 Allinase Lyase_aromatic PF00221.14 gi|325968300|ref|YP_004244492.1| - 6e-142 473.4 4.9 7.5e-142 473.0 3.4 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Rib_5-P_isom_A PF06026.9 gi|325968301|ref|YP_004244493.1| - 1e-56 190.9 0.0 1.3e-56 190.6 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|325968301|ref|YP_004244493.1| - 0.0011 18.6 0.2 0.043 13.4 0.1 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|325968301|ref|YP_004244493.1| - 0.0038 16.1 0.0 0.38 9.6 0.0 2.2 2 0 0 2 2 2 2 Putative sugar-binding domain Pterin_bind PF00809.17 gi|325968302|ref|YP_004244494.1| - 5.1e-44 150.1 2.8 8.3e-42 142.9 0.9 2.2 2 0 0 2 2 2 2 Pterin binding enzyme DUF2683 PF10884.3 gi|325968302|ref|YP_004244494.1| - 0.098 12.5 0.1 0.23 11.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2683) LysR_substrate PF03466.15 gi|325968302|ref|YP_004244494.1| - 0.099 11.7 0.1 0.58 9.2 0.0 2.0 2 0 0 2 2 2 0 LysR substrate binding domain DUF552 PF04472.7 gi|325968303|ref|YP_004244495.1| - 0.0059 16.4 0.0 0.017 14.9 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF552) HTH_27 PF13463.1 gi|325968303|ref|YP_004244495.1| - 0.015 15.6 0.1 0.025 14.8 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|325968303|ref|YP_004244495.1| - 0.02 14.5 0.1 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family Phage_rep_org_N PF09681.5 gi|325968303|ref|YP_004244495.1| - 0.021 14.3 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.14 gi|325968303|ref|YP_004244495.1| - 0.025 14.2 0.1 0.051 13.2 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TelA PF05816.6 gi|325968303|ref|YP_004244495.1| - 0.04 12.6 0.1 0.05 12.3 0.1 1.1 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) HTH_Crp_2 PF13545.1 gi|325968303|ref|YP_004244495.1| - 0.043 13.6 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|325968303|ref|YP_004244495.1| - 0.051 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain MarR PF01047.17 gi|325968303|ref|YP_004244495.1| - 0.093 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 MarR family Na_Ca_ex PF01699.19 gi|325968304|ref|YP_004244496.1| - 2.2e-17 62.9 33.2 2.3e-11 43.4 8.3 2.3 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Sod_Fe_C PF02777.13 gi|325968305|ref|YP_004244497.1| - 3.6e-34 116.7 0.1 5.8e-34 116.1 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|325968305|ref|YP_004244497.1| - 5.8e-29 100.1 0.3 5.8e-29 100.1 0.2 2.3 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Toxin_52 PF15605.1 gi|325968305|ref|YP_004244497.1| - 0.062 13.2 0.0 0.18 11.7 0.0 1.8 1 1 0 1 1 1 0 Putative toxin 52 Arginase PF00491.16 gi|325968306|ref|YP_004244498.1| - 1.8e-60 204.5 0.1 2.2e-60 204.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF2179 PF10035.4 gi|325968306|ref|YP_004244498.1| - 0.032 13.8 0.0 0.092 12.3 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2179) PIN PF01850.16 gi|325968307|ref|YP_004244499.1| - 5.9e-15 55.6 0.0 6.7e-15 55.4 0.0 1.0 1 0 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|325968308|ref|YP_004244500.1| - 2.3e-15 55.9 1.0 3.5e-15 55.3 0.7 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Cons_hypoth698 PF03601.9 gi|325968309|ref|YP_004244501.1| - 7e-22 77.4 19.9 7e-22 77.4 13.8 2.2 2 1 0 2 2 2 1 Conserved hypothetical protein 698 Peptidase_M48 PF01435.13 gi|325968309|ref|YP_004244501.1| - 0.19 11.2 0.1 0.44 10.0 0.1 1.6 1 0 0 1 1 1 0 Peptidase family M48 Radical_SAM PF04055.16 gi|325968310|ref|YP_004244502.1| - 5.2e-14 52.7 0.0 9.6e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|325968310|ref|YP_004244502.1| - 5e-13 49.1 2.2 1.3e-12 47.8 1.0 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|325968310|ref|YP_004244502.1| - 0.0071 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Urocanase PF01175.13 gi|325968311|ref|YP_004244503.1| - 1.3e-236 785.9 0.0 1.5e-236 785.7 0.0 1.0 1 0 0 1 1 1 1 Urocanase Arch_ATPase PF01637.13 gi|325968312|ref|YP_004244504.1| - 1.2e-20 74.2 0.0 1.3e-20 74.1 0.0 1.0 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|325968312|ref|YP_004244504.1| - 0.00062 19.6 0.2 0.0026 17.6 0.0 2.0 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|325968312|ref|YP_004244504.1| - 0.069 13.2 0.1 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain GIIM PF08388.6 gi|325968312|ref|YP_004244504.1| - 0.2 11.4 0.7 14 5.5 0.1 2.4 2 0 0 2 2 2 0 Group II intron, maturase-specific domain Arch_ATPase PF01637.13 gi|325968313|ref|YP_004244505.1| - 4.9e-09 36.2 0.2 5.4e-09 36.0 0.1 1.0 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|325968313|ref|YP_004244505.1| - 0.002 18.0 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325968313|ref|YP_004244505.1| - 0.0048 16.9 0.0 0.0049 16.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|325968313|ref|YP_004244505.1| - 0.018 15.2 0.0 0.046 13.9 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|325968313|ref|YP_004244505.1| - 0.033 15.0 0.0 0.082 13.7 0.0 1.6 1 1 1 2 2 2 0 AAA domain VIT1 PF01988.14 gi|325968316|ref|YP_004244508.1| - 1.3e-38 132.6 10.9 2.3e-38 131.8 7.5 1.4 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.12 gi|325968316|ref|YP_004244508.1| - 2.7e-08 34.2 1.5 4.8e-08 33.4 1.0 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF1700 PF08006.6 gi|325968316|ref|YP_004244508.1| - 0.0076 15.5 1.3 0.0076 15.5 0.9 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1700) DUF1947 PF09183.5 gi|325968316|ref|YP_004244508.1| - 0.026 14.2 0.1 0.75 9.6 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1947) MFS_2 PF13347.1 gi|325968316|ref|YP_004244508.1| - 0.15 10.4 7.9 0.013 13.8 2.1 1.6 2 0 0 2 2 2 0 MFS/sugar transport protein Acyl-CoA_dh_1 PF00441.19 gi|325968317|ref|YP_004244509.1| - 6.5e-41 139.9 5.6 1e-40 139.2 3.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|325968317|ref|YP_004244509.1| - 6e-32 110.5 0.1 5.3e-31 107.5 0.0 2.5 3 1 1 4 4 4 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|325968317|ref|YP_004244509.1| - 4.7e-22 77.2 0.0 7.5e-22 76.6 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|325968317|ref|YP_004244509.1| - 1.4e-18 67.4 1.7 2.1e-18 66.8 1.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain CN_hydrolase PF00795.17 gi|325968318|ref|YP_004244510.1| - 9.7e-10 38.0 0.0 1.8e-09 37.2 0.0 1.5 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Radical_SAM PF04055.16 gi|325968319|ref|YP_004244511.1| - 2e-22 80.0 0.0 5.1e-22 78.8 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|325968319|ref|YP_004244511.1| - 0.0017 18.3 0.1 0.0074 16.2 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family DEAD_2 PF06733.10 gi|325968320|ref|YP_004244512.1| - 4.9e-28 97.6 0.5 8.4e-28 96.9 0.3 1.4 1 0 0 1 1 1 1 DEAD_2 Helicase_C_2 PF13307.1 gi|325968320|ref|YP_004244512.1| - 3.6e-25 88.8 0.0 8.1e-25 87.7 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain ResIII PF04851.10 gi|325968320|ref|YP_004244512.1| - 2.4e-09 37.2 0.0 2.6e-06 27.4 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|325968320|ref|YP_004244512.1| - 7.2e-06 25.6 0.0 0.00011 21.7 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.11 gi|325968320|ref|YP_004244512.1| - 0.0012 18.1 0.3 0.013 14.6 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.1 gi|325968320|ref|YP_004244512.1| - 0.0017 18.4 0.1 3.2 7.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain Zot PF05707.7 gi|325968320|ref|YP_004244512.1| - 0.005 16.3 0.0 1.1 8.6 0.0 2.5 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_25 PF13481.1 gi|325968320|ref|YP_004244512.1| - 0.033 13.6 0.3 0.11 11.8 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.1 gi|325968320|ref|YP_004244512.1| - 0.045 13.3 0.1 0.16 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|325968320|ref|YP_004244512.1| - 0.061 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain SNF2_N PF00176.18 gi|325968320|ref|YP_004244512.1| - 0.12 11.1 0.0 0.47 9.1 0.0 1.9 2 0 0 2 2 2 0 SNF2 family N-terminal domain DUF2972 PF11186.3 gi|325968320|ref|YP_004244512.1| - 0.26 11.1 2.6 0.35 10.7 0.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2972) Claudin_2 PF13903.1 gi|325968321|ref|YP_004244513.1| - 0.018 14.7 0.6 0.026 14.2 0.4 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Sdh_cyt PF01127.17 gi|325968321|ref|YP_004244513.1| - 0.025 14.4 0.3 0.033 14.0 0.2 1.1 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SUR7 PF06687.7 gi|325968321|ref|YP_004244513.1| - 0.15 11.5 1.7 0.2 11.2 1.2 1.1 1 0 0 1 1 1 0 SUR7/PalI family Pex14_N PF04695.8 gi|325968321|ref|YP_004244513.1| - 0.27 11.2 14.6 0.18 11.8 0.4 3.1 2 1 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Pox_A14 PF05767.7 gi|325968321|ref|YP_004244513.1| - 0.34 10.9 2.0 0.5 10.3 1.4 1.3 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 VirB3 PF05101.8 gi|325968321|ref|YP_004244513.1| - 1.2 9.2 6.4 20 5.2 4.4 2.1 1 1 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein DUF4131 PF13567.1 gi|325968321|ref|YP_004244513.1| - 1.4 8.2 4.8 0.76 9.1 1.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Topoisom_bac PF01131.15 gi|325968322|ref|YP_004244514.1| - 2.8e-99 332.6 0.0 3.5e-99 332.3 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|325968322|ref|YP_004244514.1| - 2e-14 53.3 0.1 2.7e-13 49.7 0.0 2.5 3 0 0 3 3 3 1 Toprim domain Toprim_4 PF13662.1 gi|325968322|ref|YP_004244514.1| - 0.1 12.6 0.0 0.49 10.4 0.0 2.2 2 0 0 2 2 2 0 Toprim domain TENA_THI-4 PF03070.11 gi|325968323|ref|YP_004244515.1| - 8.2e-52 176.0 0.0 9.2e-52 175.8 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family adh_short PF00106.20 gi|325968324|ref|YP_004244516.1| - 1.3e-32 112.9 0.4 1.9e-32 112.4 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|325968324|ref|YP_004244516.1| - 4.3e-29 101.9 0.3 5.1e-29 101.7 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|325968324|ref|YP_004244516.1| - 3.3e-14 52.9 0.1 4.3e-14 52.5 0.1 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.5 gi|325968324|ref|YP_004244516.1| - 1.4e-05 24.4 0.1 0.00021 20.5 0.0 2.0 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Epimerase PF01370.16 gi|325968324|ref|YP_004244516.1| - 0.01 15.2 0.1 0.018 14.5 0.1 1.6 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family Radical_SAM PF04055.16 gi|325968325|ref|YP_004244517.1| - 8.6e-21 74.8 0.0 7.3e-20 71.7 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.15 gi|325968325|ref|YP_004244517.1| - 0.12 12.2 0.8 3.6 7.4 0.0 3.1 3 0 0 3 3 3 0 TRAM domain HTH_5 PF01022.15 gi|325968326|ref|YP_004244518.1| - 3.8e-09 36.0 0.0 5.8e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|325968326|ref|YP_004244518.1| - 5.8e-08 32.4 0.0 1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|325968326|ref|YP_004244518.1| - 9.7e-07 28.2 0.0 1.5e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|325968326|ref|YP_004244518.1| - 1.6e-05 24.1 0.0 3e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|325968326|ref|YP_004244518.1| - 6.4e-05 22.5 0.0 0.00011 21.8 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|325968326|ref|YP_004244518.1| - 0.00014 21.5 0.0 0.00028 20.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|325968326|ref|YP_004244518.1| - 0.00047 19.6 0.0 0.00087 18.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|325968326|ref|YP_004244518.1| - 0.00054 19.6 0.0 0.0012 18.5 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|325968326|ref|YP_004244518.1| - 0.00066 19.2 0.0 0.0013 18.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|325968326|ref|YP_004244518.1| - 0.048 13.9 0.0 0.082 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Lactamase_B_2 PF12706.2 gi|325968328|ref|YP_004244520.1| - 3.5e-25 88.6 0.1 5.2e-25 88.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|325968328|ref|YP_004244520.1| - 1.1e-16 61.1 1.5 5.9e-14 52.1 0.2 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|325968328|ref|YP_004244520.1| - 1.2e-05 24.6 0.0 2.8e-05 23.4 0.0 1.6 2 0 0 2 2 2 1 tRNase Z endonuclease RrnaAD PF00398.15 gi|325968329|ref|YP_004244521.1| - 2.3e-45 154.6 0.0 2.7e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|325968329|ref|YP_004244521.1| - 1.2e-11 44.6 0.0 2e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968329|ref|YP_004244521.1| - 9.9e-09 34.9 0.0 1.7e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|325968329|ref|YP_004244521.1| - 5e-08 32.4 0.0 8.3e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|325968329|ref|YP_004244521.1| - 3.5e-07 30.8 0.0 5.6e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|325968329|ref|YP_004244521.1| - 0.00018 21.9 0.0 0.00033 21.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|325968329|ref|YP_004244521.1| - 0.00035 19.8 0.2 0.00052 19.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|325968329|ref|YP_004244521.1| - 0.001 18.6 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.1 gi|325968329|ref|YP_004244521.1| - 0.0012 18.6 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|325968329|ref|YP_004244521.1| - 0.0024 16.9 0.0 0.0038 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|325968329|ref|YP_004244521.1| - 0.0031 17.8 0.0 0.0055 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|325968329|ref|YP_004244521.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|325968329|ref|YP_004244521.1| - 0.012 16.0 0.0 0.028 14.8 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|325968329|ref|YP_004244521.1| - 0.066 12.5 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF43 PF01861.11 gi|325968329|ref|YP_004244521.1| - 0.073 12.0 0.1 0.11 11.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF43 AA_kinase PF00696.23 gi|325968330|ref|YP_004244522.1| - 1.5e-26 93.4 0.0 1.9e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Hydrolase_6 PF13344.1 gi|325968330|ref|YP_004244522.1| - 0.057 13.3 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|325968330|ref|YP_004244522.1| - 0.085 13.0 0.0 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Cren7 PF11520.3 gi|325968332|ref|YP_004244524.1| - 3.2e-21 74.7 1.2 3.3e-21 74.6 0.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DapB_N PF01113.15 gi|325968333|ref|YP_004244525.1| - 3.4e-08 33.4 0.2 5.8e-08 32.6 0.2 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|325968333|ref|YP_004244525.1| - 0.00078 19.9 0.0 0.0017 18.8 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.14 gi|325968333|ref|YP_004244525.1| - 0.005 17.3 0.4 0.014 15.8 0.3 1.8 1 0 0 1 1 1 1 CoA binding domain Saccharop_dh PF03435.13 gi|325968333|ref|YP_004244525.1| - 0.0084 15.1 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase CENP-B_N PF04218.8 gi|325968333|ref|YP_004244525.1| - 0.0088 15.4 0.0 0.017 14.4 0.0 1.5 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain Gp_dh_N PF00044.19 gi|325968333|ref|YP_004244525.1| - 0.045 13.7 0.7 1.7 8.5 0.2 2.3 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|325968333|ref|YP_004244525.1| - 0.077 13.4 0.3 0.81 10.1 0.2 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.11 gi|325968333|ref|YP_004244525.1| - 0.11 12.9 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DUF1616 PF07760.6 gi|325968334|ref|YP_004244526.1| - 3.5e-17 62.4 8.1 6.4e-17 61.6 5.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) TPR_19 PF14559.1 gi|325968334|ref|YP_004244526.1| - 0.036 14.3 0.0 1.6 9.1 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4013 PF13197.1 gi|325968334|ref|YP_004244526.1| - 0.18 11.1 14.0 0.048 12.9 7.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) Protocadherin PF08374.6 gi|325968334|ref|YP_004244526.1| - 0.43 10.1 3.9 0.3 10.6 0.4 2.0 2 0 0 2 2 2 0 Protocadherin DUF4448 PF14610.1 gi|325968334|ref|YP_004244526.1| - 0.46 9.9 2.2 0.59 9.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) Rifin_STEVOR PF02009.11 gi|325968334|ref|YP_004244526.1| - 5.1 6.6 7.9 1.1 8.8 2.5 1.8 2 0 0 2 2 2 0 Rifin/stevor family DUF4307 PF14155.1 gi|325968334|ref|YP_004244526.1| - 6.8 6.5 8.9 1.1 9.0 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4307) DUF3753 PF12575.3 gi|325968334|ref|YP_004244526.1| - 6.8 6.5 10.9 9.5 6.1 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3753) Molybdopterin PF00384.17 gi|325968335|ref|YP_004244527.1| - 2.4e-91 306.6 0.0 3e-91 306.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|325968335|ref|YP_004244527.1| - 2.5e-25 88.4 0.0 5.6e-25 87.3 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|325968335|ref|YP_004244527.1| - 5e-16 58.2 1.4 5e-16 58.2 0.9 2.6 3 0 0 3 3 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.1 gi|325968335|ref|YP_004244527.1| - 9.4e-16 57.3 0.1 2.7e-15 55.9 0.1 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.22 gi|325968335|ref|YP_004244527.1| - 3.4e-08 33.1 0.3 3.4e-08 33.1 0.2 2.3 3 1 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.2 gi|325968335|ref|YP_004244527.1| - 3.8e-07 29.6 21.7 0.00024 20.8 2.5 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968335|ref|YP_004244527.1| - 4.9e-06 26.3 6.8 4.9e-06 26.3 4.7 2.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968335|ref|YP_004244527.1| - 8.3e-06 25.1 25.9 9.1e-06 25.0 2.6 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|325968335|ref|YP_004244527.1| - 8.7e-05 22.4 8.4 8.7e-05 22.4 5.8 2.7 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968335|ref|YP_004244527.1| - 8.7e-05 22.7 9.2 0.05 13.9 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968335|ref|YP_004244527.1| - 0.00019 21.7 31.7 0.00029 21.1 9.9 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968335|ref|YP_004244527.1| - 0.00062 19.5 16.5 0.063 13.0 4.8 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325968335|ref|YP_004244527.1| - 0.00064 19.4 2.2 0.00064 19.4 1.5 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|325968335|ref|YP_004244527.1| - 0.00093 19.4 12.1 0.00093 19.4 8.4 3.0 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968335|ref|YP_004244527.1| - 0.0043 17.4 1.2 0.0043 17.4 0.8 3.3 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325968335|ref|YP_004244527.1| - 0.0093 16.6 6.0 0.0093 16.6 4.2 3.3 4 1 0 4 4 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|325968335|ref|YP_004244527.1| - 0.022 15.0 4.3 0.022 15.0 3.0 3.8 5 0 0 5 5 3 0 4Fe-4S binding domain Fer2_3 PF13085.1 gi|325968335|ref|YP_004244527.1| - 0.045 13.5 1.9 0.062 13.1 0.1 2.1 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain DUF4350 PF14258.1 gi|325968335|ref|YP_004244527.1| - 0.074 13.2 0.0 0.37 11.0 0.0 2.2 2 0 0 2 2 1 0 Domain of unknown function (DUF4350) Complex1_51K PF01512.12 gi|325968336|ref|YP_004244528.1| - 3.9e-29 101.3 0.0 6.8e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|325968336|ref|YP_004244528.1| - 9.9e-17 59.8 0.1 2.5e-16 58.5 0.1 1.7 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 2Fe-2S_thioredx PF01257.14 gi|325968336|ref|YP_004244528.1| - 8.9e-11 41.5 0.1 7.1e-10 38.6 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin SLBB PF10531.4 gi|325968336|ref|YP_004244528.1| - 0.013 15.4 0.2 0.031 14.1 0.1 1.7 1 0 0 1 1 1 0 SLBB domain Sigma70_r4 PF04545.11 gi|325968336|ref|YP_004244528.1| - 0.024 13.9 0.8 0.059 12.6 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 PIN PF01850.16 gi|325968338|ref|YP_004244530.1| - 7.2e-19 68.3 0.2 8.1e-19 68.1 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|325968338|ref|YP_004244530.1| - 0.0023 18.5 0.1 0.0042 17.7 0.0 1.4 1 1 0 1 1 1 1 PIN domain Antitoxin-MazE PF04014.13 gi|325968339|ref|YP_004244531.1| - 4.8e-11 42.1 0.6 8.2e-11 41.3 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PUA PF01472.15 gi|325968339|ref|YP_004244531.1| - 0.0032 17.1 0.2 0.004 16.8 0.2 1.1 1 0 0 1 1 1 1 PUA domain SymE_toxin PF08845.5 gi|325968339|ref|YP_004244531.1| - 0.041 13.7 0.1 0.74 9.7 0.0 2.2 2 0 0 2 2 2 0 Toxin SymE, type I toxin-antitoxin system Molydop_binding PF01568.16 gi|325968339|ref|YP_004244531.1| - 0.06 13.1 0.0 0.087 12.6 0.0 1.3 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain DSX_dimer PF08828.5 gi|325968339|ref|YP_004244531.1| - 0.068 12.7 0.4 0.11 12.0 0.3 1.3 1 0 0 1 1 1 0 Doublesex dimerisation domain A-2_8-polyST PF07388.6 gi|325968339|ref|YP_004244531.1| - 0.099 11.0 0.2 0.11 10.8 0.1 1.0 1 0 0 1 1 1 0 Alpha-2,8-polysialyltransferase (POLYST) Asparaginase PF00710.15 gi|325968340|ref|YP_004244532.1| - 1.8e-86 289.8 0.0 2.3e-86 289.5 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|325968340|ref|YP_004244532.1| - 0.062 12.6 0.0 2.6 7.3 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein domain SfsA PF03749.8 gi|325968341|ref|YP_004244533.1| - 2.3e-53 180.8 0.0 2.7e-53 180.6 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein DUF91 PF01939.11 gi|325968341|ref|YP_004244533.1| - 0.021 13.9 0.0 0.031 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF91 DUF2079 PF09852.4 gi|325968342|ref|YP_004244534.1| - 8.7e-58 196.1 47.9 8.7e-58 196.1 33.2 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2079) MFS_1 PF07690.11 gi|325968343|ref|YP_004244535.1| - 2.3e-31 108.7 45.2 2.3e-17 62.7 12.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3834 PF12916.2 gi|325968344|ref|YP_004244536.1| - 2.2e-68 229.2 0.0 2.5e-68 229.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) CitMHS PF03600.11 gi|325968345|ref|YP_004244537.1| - 3e-34 118.1 3.0 2e-32 112.1 0.0 2.1 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.14 gi|325968345|ref|YP_004244537.1| - 6.9e-14 51.5 47.6 7.6e-08 31.6 11.9 2.3 2 0 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|325968345|ref|YP_004244537.1| - 3.7e-13 48.8 0.3 9.6e-10 37.9 0.0 2.6 2 0 0 2 2 2 2 TrkA-C domain adh_short_C2 PF13561.1 gi|325968346|ref|YP_004244538.1| - 1e-32 113.8 0.1 1.3e-32 113.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|325968346|ref|YP_004244538.1| - 8.8e-32 110.3 0.1 1.2e-31 109.8 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|325968346|ref|YP_004244538.1| - 3.8e-13 49.4 0.0 5.8e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|325968346|ref|YP_004244538.1| - 3.3e-07 29.9 0.2 4.9e-06 26.1 0.0 2.1 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|325968346|ref|YP_004244538.1| - 1.8e-05 24.8 0.1 3.3e-05 23.9 0.0 1.5 2 0 0 2 2 2 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|325968346|ref|YP_004244538.1| - 4.9e-05 22.1 0.1 7.4e-05 21.5 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|325968346|ref|YP_004244538.1| - 0.00057 19.2 0.6 0.0011 18.3 0.2 1.6 2 0 0 2 2 2 1 NmrA-like family Eno-Rase_NADH_b PF12242.3 gi|325968346|ref|YP_004244538.1| - 0.0092 15.7 0.2 0.024 14.3 0.1 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase TrkA_N PF02254.13 gi|325968346|ref|YP_004244538.1| - 0.012 15.6 0.2 0.029 14.3 0.2 1.6 1 0 0 1 1 1 0 TrkA-N domain CRS1_YhbY PF01985.16 gi|325968346|ref|YP_004244538.1| - 0.066 13.2 0.1 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 CRS1 / YhbY (CRM) domain Aminotran_3 PF00202.16 gi|325968349|ref|YP_004244541.1| - 9.3e-56 189.1 0.0 1.3e-55 188.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Isochorismatase PF00857.15 gi|325968350|ref|YP_004244542.1| - 1.5e-33 116.2 0.0 1.7e-33 116.0 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF4065 PF13274.1 gi|325968351|ref|YP_004244543.1| - 0.031 14.9 0.0 0.041 14.5 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) Peptidase_M22 PF00814.20 gi|325968352|ref|YP_004244544.1| - 3.2e-72 243.2 0.0 3.7e-72 243.0 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family PHY PF00360.15 gi|325968352|ref|YP_004244544.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Phytochrome region DUF2204 PF09970.4 gi|325968354|ref|YP_004244546.1| - 5.2e-05 22.7 1.0 0.0001 21.8 0.7 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) DUF1814 PF08843.6 gi|325968354|ref|YP_004244546.1| - 0.031 14.0 1.7 0.079 12.7 1.2 1.6 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) Glyco_transf_4 PF13439.1 gi|325968355|ref|YP_004244547.1| - 0.11 12.2 0.1 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 HSBP1 PF06825.7 gi|325968356|ref|YP_004244548.1| - 0.026 14.1 0.5 0.82 9.2 0.0 2.3 1 1 1 2 2 2 0 Heat shock factor binding protein 1 COG5 PF10392.4 gi|325968356|ref|YP_004244548.1| - 0.029 14.3 0.1 0.032 14.1 0.1 1.1 1 0 0 1 1 1 0 Golgi transport complex subunit 5 DUF1628 PF07790.6 gi|325968358|ref|YP_004244550.1| - 0.00021 21.9 5.4 0.00021 21.9 3.7 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1628) DUF4333 PF14230.1 gi|325968358|ref|YP_004244550.1| - 0.078 12.9 0.6 0.11 12.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4333) DUF4330 PF14221.1 gi|325968358|ref|YP_004244550.1| - 0.26 11.1 1.9 0.5 10.2 1.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) ADH_N PF08240.7 gi|325968360|ref|YP_004244552.1| - 1.9e-22 79.1 0.0 2.8e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|325968360|ref|YP_004244552.1| - 4.9e-21 74.6 0.1 7.6e-21 74.0 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|325968360|ref|YP_004244552.1| - 2.4e-10 41.3 0.1 4e-10 40.6 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase SIS_2 PF13580.1 gi|325968360|ref|YP_004244552.1| - 0.0029 17.3 0.0 0.15 11.7 0.0 2.2 2 0 0 2 2 2 1 SIS domain Radical_SAM PF04055.16 gi|325968360|ref|YP_004244552.1| - 0.061 13.4 1.0 0.1 12.7 0.0 1.8 2 0 0 2 2 2 0 Radical SAM superfamily NAD_binding_10 PF13460.1 gi|325968360|ref|YP_004244552.1| - 0.098 12.6 0.1 0.14 12.1 0.1 1.4 1 1 0 1 1 1 0 NADH(P)-binding Abi PF02517.11 gi|325968361|ref|YP_004244553.1| - 1.7e-11 44.1 1.8 1.7e-11 44.1 1.3 2.3 1 1 1 2 2 2 1 CAAX protease self-immunity DUF4149 PF13664.1 gi|325968361|ref|YP_004244553.1| - 0.16 12.0 6.1 0.11 12.6 1.8 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4149) UbiA PF01040.13 gi|325968362|ref|YP_004244554.1| - 1.7e-36 125.7 30.3 2.3e-36 125.3 21.0 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Linocin_M18 PF04454.7 gi|325968363|ref|YP_004244555.1| - 8.5e-48 162.4 0.1 1.4e-47 161.8 0.1 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|325968363|ref|YP_004244555.1| - 3.7e-09 37.0 0.1 7.2e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|325968363|ref|YP_004244555.1| - 0.0024 17.6 0.1 0.0057 16.4 0.0 1.6 1 0 0 1 1 1 1 Ferritin-like domain DUF2202 PF09968.4 gi|325968363|ref|YP_004244555.1| - 0.0029 17.2 0.0 0.0055 16.3 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) DUF2383 PF09537.5 gi|325968363|ref|YP_004244555.1| - 0.0076 16.4 0.2 0.016 15.4 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|325968363|ref|YP_004244555.1| - 0.054 13.4 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Ferritin-like domain DUF2666 PF10869.3 gi|325968363|ref|YP_004244555.1| - 0.27 11.2 3.2 0.2 11.6 0.2 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2666) DUF1641 PF07849.6 gi|325968364|ref|YP_004244556.1| - 1.4e-09 37.3 2.5 2.6e-09 36.5 1.0 2.1 2 1 0 2 2 2 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.9 gi|325968365|ref|YP_004244557.1| - 9e-09 35.5 0.0 2.6e-08 33.9 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|325968365|ref|YP_004244557.1| - 0.0056 16.4 0.0 0.5 10.1 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|325968365|ref|YP_004244557.1| - 0.062 13.7 0.1 0.57 10.6 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TPR_11 PF13414.1 gi|325968366|ref|YP_004244558.1| - 2.1e-12 46.4 4.7 2.5e-07 30.2 0.0 2.3 2 0 0 2 2 2 2 TPR repeat TPR_1 PF00515.23 gi|325968366|ref|YP_004244558.1| - 1e-11 43.9 3.8 0.00011 21.6 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|325968366|ref|YP_004244558.1| - 1.7e-11 43.0 4.0 0.0002 21.0 0.2 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|325968366|ref|YP_004244558.1| - 8e-11 41.2 1.9 0.0041 17.1 0.0 3.3 3 0 0 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|325968366|ref|YP_004244558.1| - 6e-08 31.9 0.3 0.011 15.4 0.0 2.8 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_12 PF13424.1 gi|325968366|ref|YP_004244558.1| - 4.3e-07 29.7 0.8 3.1e-05 23.8 0.4 2.7 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_16 PF13432.1 gi|325968366|ref|YP_004244558.1| - 7.1e-07 29.7 0.4 0.021 15.4 0.0 2.5 2 0 0 2 2 2 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|325968366|ref|YP_004244558.1| - 1.3e-06 28.4 0.3 0.55 10.8 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.1 gi|325968366|ref|YP_004244558.1| - 6.7e-06 26.2 0.1 0.053 14.1 0.1 3.0 1 1 1 2 2 2 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|325968366|ref|YP_004244558.1| - 0.0001 22.5 0.3 0.011 16.0 0.0 2.8 2 1 0 2 2 2 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|325968366|ref|YP_004244558.1| - 0.00047 20.2 1.9 0.00055 20.0 0.0 2.0 2 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|325968366|ref|YP_004244558.1| - 0.0011 18.7 0.4 0.096 12.5 0.1 3.0 1 1 1 3 3 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|325968366|ref|YP_004244558.1| - 0.0026 17.4 0.3 1.5 8.7 0.1 3.3 3 0 0 3 3 3 1 Tetratricopeptide repeat Coatomer_E PF04733.9 gi|325968366|ref|YP_004244558.1| - 0.056 12.6 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 Coatomer epsilon subunit MIT PF04212.13 gi|325968366|ref|YP_004244558.1| - 0.058 13.2 1.6 2.7 7.9 0.2 2.8 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain RVT_3 PF13456.1 gi|325968368|ref|YP_004244560.1| - 3.9e-16 58.6 0.0 6.9e-16 57.8 0.0 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|325968368|ref|YP_004244560.1| - 6.1e-14 52.4 0.0 7.7e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 RNase H DUF2972 PF11186.3 gi|325968368|ref|YP_004244560.1| - 0.032 14.1 0.4 0.045 13.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2972) ArsC PF03960.10 gi|325968368|ref|YP_004244560.1| - 0.033 14.2 0.1 0.073 13.1 0.1 1.6 1 1 0 1 1 1 0 ArsC family Orthopox_F14 PF06076.7 gi|325968369|ref|YP_004244561.1| - 0.0021 18.0 0.3 0.0087 16.1 0.1 2.1 2 0 0 2 2 2 1 Orthopoxvirus F14 protein CoA_transf_3 PF02515.12 gi|325968370|ref|YP_004244562.1| - 5.9e-57 191.9 0.0 8.8e-57 191.4 0.0 1.3 1 0 0 1 1 1 1 CoA-transferase family III 4HBT_2 PF13279.1 gi|325968371|ref|YP_004244563.1| - 1.1e-06 29.0 0.1 1.5e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|325968371|ref|YP_004244563.1| - 1e-05 25.5 0.0 1.5e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily UPF0278 PF08745.6 gi|325968372|ref|YP_004244564.1| - 0.082 12.1 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 UPF0278 family RE_AccI PF09545.5 gi|325968372|ref|YP_004244564.1| - 0.12 10.9 0.1 0.14 10.6 0.0 1.2 1 0 0 1 1 1 0 AccI restriction endonuclease ACT PF01842.20 gi|325968373|ref|YP_004244565.1| - 6e-06 25.6 0.2 1.9e-05 24.0 0.1 1.9 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|325968373|ref|YP_004244565.1| - 0.0002 21.6 3.7 0.017 15.4 0.1 2.9 2 1 1 3 3 3 2 ACT domain DUF2178 PF09946.4 gi|325968373|ref|YP_004244565.1| - 0.056 13.1 1.0 0.12 12.1 0.0 1.9 2 0 0 2 2 2 0 Predicted membrane protein (DUF2178) Vps51 PF08700.6 gi|325968373|ref|YP_004244565.1| - 0.073 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Vps51/Vps67 RBD-FIP PF09457.5 gi|325968373|ref|YP_004244565.1| - 0.11 12.2 0.1 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 FIP domain DUF169 PF02596.10 gi|325968374|ref|YP_004244566.1| - 1.1e-18 67.4 0.0 1.3e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AMP-binding_C PF13193.1 gi|325968374|ref|YP_004244566.1| - 0.0032 18.3 0.0 0.0065 17.3 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF2740 PF10872.3 gi|325968374|ref|YP_004244566.1| - 0.055 13.1 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2740) Ribosomal_L14e PF01929.12 gi|325968375|ref|YP_004244567.1| - 1.2e-05 25.5 0.1 1.9e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.24 gi|325968375|ref|YP_004244567.1| - 0.00014 21.4 3.1 0.00026 20.6 2.2 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L27e PF01777.13 gi|325968375|ref|YP_004244567.1| - 0.092 12.8 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L27e protein family MR_MLE_C PF13378.1 gi|325968376|ref|YP_004244568.1| - 2.9e-28 98.0 0.0 1.9e-27 95.4 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|325968376|ref|YP_004244568.1| - 2.5e-17 63.1 0.0 1.9e-16 60.3 0.0 2.4 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|325968376|ref|YP_004244568.1| - 2.3e-12 46.9 0.0 4.8e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF4015 PF13200.1 gi|325968376|ref|YP_004244568.1| - 0.00024 20.1 0.1 0.00033 19.6 0.1 1.1 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain DeoC PF01791.4 gi|325968377|ref|YP_004244569.1| - 9.9e-29 100.2 0.1 1.2e-28 100.0 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF837 PF05769.6 gi|325968377|ref|YP_004244569.1| - 0.018 14.6 0.2 0.026 14.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF837) DHO_dh PF01180.16 gi|325968377|ref|YP_004244569.1| - 0.1 11.5 0.2 0.2 10.5 0.1 1.4 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase HisG PF01634.13 gi|325968377|ref|YP_004244569.1| - 0.12 12.0 0.7 1.4 8.4 0.1 2.1 2 0 0 2 2 2 0 ATP phosphoribosyltransferase Ribosomal_S11 PF00411.14 gi|325968378|ref|YP_004244570.1| - 5e-40 136.1 0.2 6.7e-40 135.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Acetyltransf_1 PF00583.19 gi|325968379|ref|YP_004244571.1| - 1.4e-11 44.2 0.1 1.9e-10 40.6 0.0 2.3 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|325968379|ref|YP_004244571.1| - 2.8e-05 23.7 0.0 4.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|325968379|ref|YP_004244571.1| - 0.00015 21.8 0.0 0.0003 20.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|325968379|ref|YP_004244571.1| - 0.00016 21.8 0.0 0.00025 21.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|325968379|ref|YP_004244571.1| - 0.016 15.0 0.1 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Rad51 PF08423.6 gi|325968380|ref|YP_004244572.1| - 1.1e-97 325.9 0.0 1.4e-97 325.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|325968380|ref|YP_004244572.1| - 3.1e-13 49.5 0.0 6.1e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|325968380|ref|YP_004244572.1| - 3.1e-11 42.9 0.1 7.2e-11 41.7 0.0 1.5 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|325968380|ref|YP_004244572.1| - 2.4e-10 39.9 0.7 6.4e-10 38.5 0.5 2.0 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|325968380|ref|YP_004244572.1| - 5.2e-09 36.1 0.4 5.2e-09 36.1 0.3 2.2 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|325968380|ref|YP_004244572.1| - 0.009 15.5 0.2 0.045 13.3 0.0 2.3 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF1485 PF07364.7 gi|325968380|ref|YP_004244572.1| - 0.015 14.5 0.5 0.1 11.8 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1485) HHH PF00633.18 gi|325968380|ref|YP_004244572.1| - 0.021 14.5 0.1 0.38 10.5 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_22 PF13401.1 gi|325968380|ref|YP_004244572.1| - 0.024 14.7 0.1 0.062 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|325968380|ref|YP_004244572.1| - 0.032 14.5 0.6 0.076 13.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|325968380|ref|YP_004244572.1| - 0.056 13.7 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 ABC transporter BAF PF02961.9 gi|325968380|ref|YP_004244572.1| - 0.059 13.6 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Barrier to autointegration factor HhH-GPD PF00730.20 gi|325968380|ref|YP_004244572.1| - 0.067 13.4 0.1 0.17 12.1 0.1 1.9 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein UPF0079 PF02367.12 gi|325968380|ref|YP_004244572.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ATP_bind_1 PF03029.12 gi|325968380|ref|YP_004244572.1| - 0.12 11.8 0.0 0.27 10.7 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Cdd1 PF11731.3 gi|325968380|ref|YP_004244572.1| - 0.13 12.2 0.0 0.43 10.5 0.0 1.7 1 1 0 1 1 1 0 Pathogenicity locus PAXNEB PF05625.6 gi|325968380|ref|YP_004244572.1| - 0.19 10.5 1.4 0.31 9.8 0.1 1.8 1 1 1 2 2 2 0 PAXNEB protein Asp_protease_2 PF13650.1 gi|325968381|ref|YP_004244573.1| - 0.0014 19.0 0.1 0.0019 18.6 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease DUF131 PF01998.12 gi|325968381|ref|YP_004244573.1| - 0.15 11.4 0.4 0.29 10.5 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF131 Radical_SAM PF04055.16 gi|325968382|ref|YP_004244574.1| - 1.8e-12 47.7 0.0 3.5e-10 40.3 0.0 2.6 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|325968382|ref|YP_004244574.1| - 2.5e-05 24.3 0.0 6e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|325968382|ref|YP_004244574.1| - 0.0001 22.4 0.0 0.00023 21.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TrmB PF01978.14 gi|325968383|ref|YP_004244575.1| - 0.016 14.9 0.0 0.018 14.7 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DMRL_synthase PF00885.14 gi|325968384|ref|YP_004244576.1| - 2.4e-39 134.2 1.4 2.8e-39 134.0 0.9 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase NTPase_I-T PF01931.13 gi|325968385|ref|YP_004244577.1| - 4.2e-36 124.1 0.0 4.9e-36 124.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 SWIM PF04434.12 gi|325968388|ref|YP_004244580.1| - 0.0044 16.4 0.0 0.0079 15.6 0.0 1.5 1 0 0 1 1 1 1 SWIM zinc finger DUF973 PF06157.6 gi|325968389|ref|YP_004244581.1| - 2.8e-05 23.2 14.9 2.8e-05 23.2 10.3 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF973) DHDPS PF00701.17 gi|325968390|ref|YP_004244582.1| - 4.4e-38 130.5 0.0 4.9e-38 130.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AFOR_N PF02730.10 gi|325968391|ref|YP_004244583.1| - 1.3e-30 106.3 0.0 1.8e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|325968391|ref|YP_004244583.1| - 1.6e-14 53.4 0.0 9.3e-13 47.6 0.0 2.1 2 0 0 2 2 2 2 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CBS PF00571.23 gi|325968392|ref|YP_004244584.1| - 8.3e-28 95.9 2.9 7.1e-15 54.5 0.2 2.1 2 0 0 2 2 2 2 CBS domain RNA_pol_Rpc82 PF05645.8 gi|325968392|ref|YP_004244584.1| - 0.12 11.9 0.0 9.8 5.6 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 DUF1495 PF07381.6 gi|325968393|ref|YP_004244585.1| - 0.00031 20.3 0.0 0.00034 20.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) z-alpha PF02295.12 gi|325968393|ref|YP_004244585.1| - 0.0034 17.1 0.2 0.0041 16.8 0.1 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain EAP30 PF04157.11 gi|325968393|ref|YP_004244585.1| - 0.0046 16.1 0.0 0.0051 15.9 0.0 1.0 1 0 0 1 1 1 1 EAP30/Vps36 family Lipoprotein_Ltp PF07553.6 gi|325968393|ref|YP_004244585.1| - 0.0087 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Host cell surface-exposed lipoprotein LexA_DNA_bind PF01726.11 gi|325968393|ref|YP_004244585.1| - 0.016 14.7 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain Trans_reg_C PF00486.23 gi|325968393|ref|YP_004244585.1| - 0.025 14.4 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal RuvB_C PF05491.8 gi|325968393|ref|YP_004244585.1| - 0.029 13.9 0.1 0.032 13.8 0.0 1.0 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus Arg_repressor PF01316.16 gi|325968393|ref|YP_004244585.1| - 0.031 13.8 0.1 0.041 13.4 0.1 1.1 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain HTH_20 PF12840.2 gi|325968393|ref|YP_004244585.1| - 0.033 13.9 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|325968393|ref|YP_004244585.1| - 0.071 12.7 0.0 0.12 12.0 0.0 1.3 1 1 0 1 1 1 0 MarR family TrmB PF01978.14 gi|325968393|ref|YP_004244585.1| - 0.076 12.7 0.2 0.09 12.4 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RNA_pol_Rpc34 PF05158.7 gi|325968393|ref|YP_004244585.1| - 0.1 11.7 0.0 0.11 11.6 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Lactamase_B_2 PF12706.2 gi|325968394|ref|YP_004244586.1| - 4e-09 36.3 0.0 7.9e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|325968394|ref|YP_004244586.1| - 1.2e-06 28.2 0.0 2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|325968394|ref|YP_004244586.1| - 2.2e-05 24.2 2.5 0.065 12.8 0.5 2.6 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily SAM_adeno_trans PF01887.11 gi|325968395|ref|YP_004244587.1| - 3.2e-91 304.9 0.0 3.6e-91 304.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DNA_binding_1 PF01035.15 gi|325968396|ref|YP_004244588.1| - 5.7e-23 80.4 0.0 9e-23 79.8 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Phage_Cox PF10743.4 gi|325968396|ref|YP_004244588.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Regulatory phage protein cox ThiS PF02597.15 gi|325968397|ref|YP_004244589.1| - 1.1e-09 38.5 0.1 1.3e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|325968397|ref|YP_004244589.1| - 1.5e-07 31.4 0.2 1.6e-07 31.2 0.2 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) QRPTase_C PF01729.14 gi|325968399|ref|YP_004244591.1| - 6.8e-17 61.5 0.0 9.1e-17 61.0 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|325968399|ref|YP_004244591.1| - 6.3e-07 29.1 0.0 1.2e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain THUMP PF02926.12 gi|325968400|ref|YP_004244592.1| - 2.6e-16 59.8 0.4 3.3e-16 59.4 0.3 1.2 1 0 0 1 1 1 1 THUMP domain IF3_C PF00707.17 gi|325968400|ref|YP_004244592.1| - 0.12 12.1 0.2 0.37 10.5 0.2 1.7 1 1 1 2 2 2 0 Translation initiation factor IF-3, C-terminal domain NAD_binding_2 PF03446.10 gi|325968401|ref|YP_004244593.1| - 1.3e-20 73.8 0.1 3.2e-20 72.6 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|325968401|ref|YP_004244593.1| - 5.1e-15 55.6 0.0 8.7e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|325968401|ref|YP_004244593.1| - 1.4e-06 28.6 0.0 6e-06 26.6 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|325968401|ref|YP_004244593.1| - 1.1e-05 25.5 0.0 2.4e-05 24.4 0.0 1.6 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|325968401|ref|YP_004244593.1| - 6.6e-05 22.1 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|325968401|ref|YP_004244593.1| - 7.7e-05 22.4 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|325968401|ref|YP_004244593.1| - 8.8e-05 22.2 0.0 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|325968401|ref|YP_004244593.1| - 0.00028 20.3 0.0 0.00046 19.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|325968401|ref|YP_004244593.1| - 0.00045 20.2 0.0 0.0008 19.4 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding Rossmann-like PF10727.4 gi|325968401|ref|YP_004244593.1| - 0.0024 17.5 0.0 0.0046 16.6 0.0 1.5 1 0 0 1 1 1 1 Rossmann-like domain NmrA PF05368.8 gi|325968401|ref|YP_004244593.1| - 0.0057 15.9 0.0 0.0079 15.4 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|325968401|ref|YP_004244593.1| - 0.0093 15.9 0.1 1.2 9.0 0.0 2.2 2 0 0 2 2 2 1 short chain dehydrogenase XdhC_C PF13478.1 gi|325968401|ref|YP_004244593.1| - 0.01 16.1 0.0 0.35 11.1 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|325968401|ref|YP_004244593.1| - 0.011 14.7 0.1 0.014 14.3 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|325968401|ref|YP_004244593.1| - 0.017 15.1 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain DapB_N PF01113.15 gi|325968401|ref|YP_004244593.1| - 0.039 13.8 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus UDPG_MGDP_dh_N PF03721.9 gi|325968401|ref|YP_004244593.1| - 0.15 11.4 0.0 0.3 10.4 0.0 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ribosomal_L31e PF01198.14 gi|325968402|ref|YP_004244594.1| - 3.9e-27 93.7 3.9 4.6e-27 93.5 2.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e AAA PF00004.24 gi|325968403|ref|YP_004244595.1| - 3.7e-81 269.8 0.0 1.3e-41 141.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|325968403|ref|YP_004244595.1| - 2.5e-12 47.6 0.0 3.8e-05 24.4 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|325968403|ref|YP_004244595.1| - 3e-12 46.7 0.0 2e-05 24.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|325968403|ref|YP_004244595.1| - 3.8e-12 45.7 0.0 7.9e-06 25.0 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|325968403|ref|YP_004244595.1| - 7.9e-12 45.4 0.6 0.0025 17.9 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|325968403|ref|YP_004244595.1| - 1.2e-11 44.5 1.8 5.4e-05 22.9 0.1 4.3 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|325968403|ref|YP_004244595.1| - 8.4e-10 38.6 0.0 0.0013 18.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|325968403|ref|YP_004244595.1| - 4e-09 36.8 0.0 0.0044 17.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|325968403|ref|YP_004244595.1| - 4.5e-09 35.9 0.0 0.00019 20.8 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|325968403|ref|YP_004244595.1| - 7.2e-09 35.0 1.6 0.0015 17.7 0.2 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|325968403|ref|YP_004244595.1| - 1.3e-07 31.8 0.1 0.059 13.3 0.0 3.8 3 1 1 4 4 4 2 AAA ATPase domain AAA_33 PF13671.1 gi|325968403|ref|YP_004244595.1| - 4.1e-07 29.9 0.0 0.0021 17.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|325968403|ref|YP_004244595.1| - 9.3e-06 24.8 0.0 0.084 11.9 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin RNA_helicase PF00910.17 gi|325968403|ref|YP_004244595.1| - 2.2e-05 24.5 0.0 0.22 11.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Vps4_C PF09336.5 gi|325968403|ref|YP_004244595.1| - 2.7e-05 23.9 0.0 0.028 14.2 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.1 gi|325968403|ref|YP_004244595.1| - 3.3e-05 23.5 0.2 0.38 10.2 0.0 2.8 3 0 0 3 3 2 2 AAA domain NACHT PF05729.7 gi|325968403|ref|YP_004244595.1| - 3.6e-05 23.4 0.2 0.11 12.1 0.1 3.8 3 1 1 4 4 4 1 NACHT domain AAA_25 PF13481.1 gi|325968403|ref|YP_004244595.1| - 8.2e-05 22.0 5.3 0.085 12.2 0.1 3.9 2 2 2 4 4 4 2 AAA domain Arch_ATPase PF01637.13 gi|325968403|ref|YP_004244595.1| - 0.00011 22.0 0.0 8 6.0 0.0 3.7 2 1 1 3 3 3 0 Archaeal ATPase AAA_19 PF13245.1 gi|325968403|ref|YP_004244595.1| - 0.00011 21.8 2.4 0.23 11.2 0.1 2.8 2 0 0 2 2 2 2 Part of AAA domain AAA_28 PF13521.1 gi|325968403|ref|YP_004244595.1| - 0.00011 22.1 0.0 0.082 12.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|325968403|ref|YP_004244595.1| - 0.00013 20.7 0.1 0.19 10.4 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus AAA_3 PF07726.6 gi|325968403|ref|YP_004244595.1| - 0.00016 21.2 0.1 0.48 10.0 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|325968403|ref|YP_004244595.1| - 0.00028 20.7 0.0 0.24 11.2 0.0 2.4 2 0 0 2 2 2 1 Shikimate kinase Sigma54_activat PF00158.21 gi|325968403|ref|YP_004244595.1| - 0.00042 19.8 0.0 0.71 9.3 0.0 2.7 3 0 0 3 3 2 2 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|325968403|ref|YP_004244595.1| - 0.00045 19.9 1.4 0.41 10.3 0.0 3.6 3 1 1 4 4 4 1 NTPase ABC_tran PF00005.22 gi|325968403|ref|YP_004244595.1| - 0.0005 20.3 0.0 0.31 11.3 0.0 2.4 2 0 0 2 2 2 1 ABC transporter DUF815 PF05673.8 gi|325968403|ref|YP_004244595.1| - 0.0033 16.3 0.0 1.3 7.9 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF815) KTI12 PF08433.5 gi|325968403|ref|YP_004244595.1| - 0.0087 15.2 0.1 4.8 6.3 0.0 2.6 3 0 0 3 3 2 0 Chromatin associated protein KTI12 UPF0079 PF02367.12 gi|325968403|ref|YP_004244595.1| - 0.0099 15.5 0.2 0.51 9.9 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|325968403|ref|YP_004244595.1| - 0.031 13.1 0.1 3.7 6.3 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_10 PF12846.2 gi|325968403|ref|YP_004244595.1| - 0.033 13.6 0.7 2.3 7.5 0.1 2.7 2 0 0 2 2 2 0 AAA-like domain MCM PF00493.18 gi|325968403|ref|YP_004244595.1| - 0.037 12.8 0.0 4.4 6.0 0.0 2.7 3 0 0 3 3 3 0 MCM2/3/5 family PhoH PF02562.11 gi|325968403|ref|YP_004244595.1| - 0.052 12.7 0.2 9.4 5.3 0.1 2.5 2 0 0 2 2 2 0 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|325968403|ref|YP_004244595.1| - 0.053 13.5 0.0 7.6 6.5 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|325968403|ref|YP_004244595.1| - 0.074 12.6 0.0 9.5 5.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AFG1_ATPase PF03969.11 gi|325968403|ref|YP_004244595.1| - 0.089 11.5 0.0 7.5 5.2 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase KaiC PF06745.8 gi|325968403|ref|YP_004244595.1| - 0.094 11.8 0.2 24 3.9 0.0 3.0 3 0 0 3 3 3 0 KaiC Bac_DnaA PF00308.13 gi|325968403|ref|YP_004244595.1| - 0.1 12.2 0.2 55 3.2 0.1 3.7 4 0 0 4 4 4 0 Bacterial dnaA protein Parvo_NS1 PF01057.12 gi|325968403|ref|YP_004244595.1| - 0.17 10.6 0.2 2.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_30 PF13604.1 gi|325968403|ref|YP_004244595.1| - 0.25 10.9 0.2 5.8 6.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain Rep_fac_C PF08542.6 gi|325968404|ref|YP_004244596.1| - 0.05 13.5 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Replication factor C C-terminal domain HTH_7 PF02796.10 gi|325968404|ref|YP_004244596.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Elf1 PF05129.8 gi|325968405|ref|YP_004244597.1| - 0.034 13.8 0.5 8 6.2 0.0 2.5 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Rad50_zn_hook PF04423.9 gi|325968405|ref|YP_004244597.1| - 0.16 11.4 0.6 0.52 9.8 0.4 1.9 1 0 0 1 1 1 0 Rad50 zinc hook motif DMRL_synthase PF00885.14 gi|325968406|ref|YP_004244598.1| - 9.6e-14 51.2 0.0 1.1e-13 51.0 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Glyco_hydro_57 PF03065.10 gi|325968408|ref|YP_004244600.1| - 1.4e-53 182.1 0.0 1.5e-52 178.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF4364 PF14277.1 gi|325968409|ref|YP_004244601.1| - 0.043 13.4 0.0 0.064 12.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) Cdc6_C PF09079.6 gi|325968410|ref|YP_004244602.1| - 8.8e-20 70.2 0.0 2.2e-19 68.9 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|325968410|ref|YP_004244602.1| - 2.5e-09 37.3 0.0 9.5e-09 35.4 0.0 1.9 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|325968410|ref|YP_004244602.1| - 1e-05 25.6 0.0 3.6e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|325968410|ref|YP_004244602.1| - 7.9e-05 22.4 0.1 0.00018 21.2 0.1 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|325968410|ref|YP_004244602.1| - 0.0043 17.2 0.0 0.0091 16.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|325968410|ref|YP_004244602.1| - 0.0062 15.4 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain 6PF2K PF01591.13 gi|325968410|ref|YP_004244602.1| - 0.0083 15.2 0.0 0.018 14.1 0.0 1.4 1 1 0 1 1 1 1 6-phosphofructo-2-kinase Bac_DnaA PF00308.13 gi|325968410|ref|YP_004244602.1| - 0.028 14.0 0.0 0.33 10.5 0.0 2.4 3 0 0 3 3 3 0 Bacterial dnaA protein IstB_IS21 PF01695.12 gi|325968410|ref|YP_004244602.1| - 0.04 13.3 0.0 0.08 12.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|325968410|ref|YP_004244602.1| - 0.04 14.7 0.3 0.12 13.2 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|325968410|ref|YP_004244602.1| - 0.041 13.6 0.0 0.084 12.6 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain PadR PF03551.9 gi|325968410|ref|YP_004244602.1| - 0.12 12.1 0.2 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family KTI12 PF08433.5 gi|325968410|ref|YP_004244602.1| - 0.13 11.4 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HpcH_HpaI PF03328.9 gi|325968411|ref|YP_004244603.1| - 1.8e-36 125.1 0.2 6.2e-18 64.5 0.0 2.1 2 0 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|325968411|ref|YP_004244603.1| - 1.7e-14 53.4 0.0 1.3e-08 34.1 0.0 2.1 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold BH4 PF02180.12 gi|325968411|ref|YP_004244603.1| - 0.035 13.6 0.1 0.067 12.7 0.1 1.5 1 0 0 1 1 1 0 Bcl-2 homology region 4 ADH_N PF08240.7 gi|325968412|ref|YP_004244604.1| - 4.4e-21 74.6 0.1 4.3e-20 71.4 0.1 2.1 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|325968412|ref|YP_004244604.1| - 1.2e-17 63.6 0.0 2e-17 62.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|325968412|ref|YP_004244604.1| - 1.4e-09 38.9 0.4 2.3e-09 38.2 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Epimerase PF01370.16 gi|325968412|ref|YP_004244604.1| - 0.084 12.2 0.1 0.14 11.5 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Glycos_transf_2 PF00535.21 gi|325968413|ref|YP_004244605.1| - 7.9e-25 87.4 0.0 1.3e-24 86.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968413|ref|YP_004244605.1| - 4.1e-07 30.0 0.0 6.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 UPF0020 PF01170.13 gi|325968414|ref|YP_004244606.1| - 1.4e-32 112.7 0.0 1.8e-32 112.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|325968414|ref|YP_004244606.1| - 6.3e-13 48.7 0.0 1.1e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|325968414|ref|YP_004244606.1| - 2.6e-09 36.6 0.0 3.8e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|325968414|ref|YP_004244606.1| - 1e-05 25.1 0.0 2.5e-05 23.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|325968414|ref|YP_004244606.1| - 0.00059 19.7 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 THUMP domain Methyltransf_18 PF12847.2 gi|325968414|ref|YP_004244606.1| - 0.0012 19.4 0.0 0.0023 18.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|325968414|ref|YP_004244606.1| - 0.0048 15.9 0.0 0.0082 15.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase N6_N4_Mtase PF01555.13 gi|325968414|ref|YP_004244606.1| - 0.0049 16.3 0.0 0.0095 15.4 0.0 1.6 2 0 0 2 2 2 1 DNA methylase Methyltransf_25 PF13649.1 gi|325968414|ref|YP_004244606.1| - 0.021 15.1 0.0 0.048 14.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|325968414|ref|YP_004244606.1| - 0.032 13.6 0.0 0.053 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_23 PF13489.1 gi|325968414|ref|YP_004244606.1| - 0.04 13.6 0.0 0.39 10.4 0.0 2.5 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|325968414|ref|YP_004244606.1| - 0.041 13.4 0.2 0.085 12.3 0.1 1.5 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|325968414|ref|YP_004244606.1| - 0.078 12.0 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|325968414|ref|YP_004244606.1| - 0.13 11.2 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF2192 PF09958.4 gi|325968415|ref|YP_004244607.1| - 3e-66 222.9 2.9 3.3e-66 222.8 2.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_L16 PF00252.13 gi|325968416|ref|YP_004244608.1| - 4.9e-33 113.7 0.1 5.7e-33 113.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e HTH_45 PF14947.1 gi|325968417|ref|YP_004244609.1| - 8.4e-08 31.9 0.0 9.4e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.1 gi|325968417|ref|YP_004244609.1| - 0.015 15.0 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HemN_C PF06969.11 gi|325968417|ref|YP_004244609.1| - 0.039 13.9 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 HemN C-terminal domain HTH_24 PF13412.1 gi|325968417|ref|YP_004244609.1| - 0.041 13.2 0.1 0.07 12.5 0.0 1.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF1469 PF07332.6 gi|325968418|ref|YP_004244610.1| - 0.19 11.4 20.4 0.052 13.2 4.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) TMEM154 PF15102.1 gi|325968418|ref|YP_004244610.1| - 1 9.0 4.5 0.22 11.2 0.2 2.0 2 0 0 2 2 2 0 TMEM154 protein family DUF4395 PF14340.1 gi|325968418|ref|YP_004244610.1| - 2.2 8.3 11.0 0.61 10.1 3.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) DUF4131 PF13567.1 gi|325968418|ref|YP_004244610.1| - 4.9 6.5 16.3 3.3 7.0 4.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) YwpF PF14183.1 gi|325968419|ref|YP_004244611.1| - 0.045 13.4 0.1 1.7 8.3 0.0 2.1 2 0 0 2 2 2 0 YwpF-like protein NAC PF01849.13 gi|325968420|ref|YP_004244612.1| - 7.2e-11 41.4 0.2 2e-10 40.0 0.1 1.8 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|325968420|ref|YP_004244612.1| - 1.2e-06 28.1 0.1 3.5e-06 26.6 0.1 1.7 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|325968420|ref|YP_004244612.1| - 0.00017 21.0 0.0 0.00051 19.5 0.0 1.8 2 0 0 2 2 2 1 UBA-like domain RNA_pol_Rpb5_C PF01191.14 gi|325968420|ref|YP_004244612.1| - 0.056 13.0 0.5 0.35 10.4 0.1 2.4 2 1 1 3 3 3 0 RNA polymerase Rpb5, C-terminal domain TPP_enzyme_C PF02775.16 gi|325968420|ref|YP_004244612.1| - 0.089 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Thioredoxin_4 PF13462.1 gi|325968421|ref|YP_004244613.1| - 5.6e-10 39.4 0.1 3.2e-09 36.9 0.0 2.1 2 1 0 2 2 2 1 Thioredoxin DUF1628 PF07790.6 gi|325968421|ref|YP_004244613.1| - 0.0093 16.6 0.1 0.021 15.5 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF3357 PF11837.3 gi|325968421|ref|YP_004244613.1| - 0.1 12.4 0.2 0.16 11.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) Thioredoxin_2 PF13098.1 gi|325968421|ref|YP_004244613.1| - 0.15 12.3 0.0 21 5.3 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin-like domain ABC2_membrane_5 PF13346.1 gi|325968421|ref|YP_004244613.1| - 2.7 7.2 10.5 1 8.6 3.7 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein DUF2862 PF11061.3 gi|325968422|ref|YP_004244614.1| - 0.022 14.4 0.0 0.86 9.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2862) tRNA-synt_2c PF01411.14 gi|325968423|ref|YP_004244615.1| - 2e-113 379.6 0.0 2.9e-113 379.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|325968423|ref|YP_004244615.1| - 1.2e-13 50.7 0.4 2.4e-13 49.7 0.3 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.10 gi|325968423|ref|YP_004244615.1| - 0.022 13.8 0.3 0.064 12.3 0.2 1.6 1 1 0 1 1 1 0 Glycyl-tRNA synthetase alpha subunit Lactamase_B PF00753.22 gi|325968424|ref|YP_004244616.1| - 2.6e-14 53.3 4.6 5.1e-14 52.3 3.2 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|325968424|ref|YP_004244616.1| - 3.8e-08 33.1 0.2 5.1e-08 32.6 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_L10 PF00466.15 gi|325968425|ref|YP_004244617.1| - 4e-20 71.6 0.0 4e-20 71.6 0.0 2.2 3 0 0 3 3 3 1 Ribosomal protein L10 7TMR-HDED PF07697.6 gi|325968425|ref|YP_004244617.1| - 0.002 17.9 0.7 0.002 17.9 0.5 3.1 3 0 0 3 3 3 1 7TM-HD extracellular Ribosomal_60s PF00428.14 gi|325968425|ref|YP_004244617.1| - 4.4 7.7 11.2 13 6.2 7.8 1.9 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|325968426|ref|YP_004244618.1| - 2.8e-44 151.1 1.8 3.1e-44 150.9 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|325968427|ref|YP_004244619.1| - 8.5e-16 57.8 0.3 1.7e-15 56.9 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|325968427|ref|YP_004244619.1| - 1.3e-06 27.7 1.2 2.3e-06 26.9 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Sec3_C_2 PF15278.1 gi|325968427|ref|YP_004244619.1| - 0.042 13.9 0.6 1.1 9.3 0.0 2.3 1 1 1 2 2 2 0 Sec3 exocyst complex subunit ACT PF01842.20 gi|325968427|ref|YP_004244619.1| - 0.092 12.2 0.0 0.74 9.3 0.0 2.3 2 0 0 2 2 2 0 ACT domain Spt5-NGN PF03439.8 gi|325968428|ref|YP_004244620.1| - 2.8e-17 62.2 0.1 2.3e-16 59.2 0.0 2.0 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|325968428|ref|YP_004244620.1| - 7.4e-05 22.3 2.1 0.00022 20.8 1.5 1.9 1 0 0 1 1 1 1 KOW motif NusG PF02357.14 gi|325968428|ref|YP_004244620.1| - 0.021 15.0 0.0 0.046 13.9 0.0 1.6 1 1 0 1 1 1 0 Transcription termination factor nusG FtsX PF02687.16 gi|325968429|ref|YP_004244621.1| - 0.04 13.6 8.0 0.043 13.5 5.5 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF3169 PF11368.3 gi|325968429|ref|YP_004244621.1| - 0.097 11.8 4.8 0.13 11.4 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) Coiled-coil_56 PF09813.4 gi|325968429|ref|YP_004244621.1| - 0.099 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 zf-DHHC PF01529.15 gi|325968429|ref|YP_004244621.1| - 0.28 10.5 5.1 0.33 10.3 3.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase NfeD PF01957.13 gi|325968429|ref|YP_004244621.1| - 0.64 10.1 4.6 0.79 9.8 3.2 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF2207 PF09972.4 gi|325968429|ref|YP_004244621.1| - 4.7 5.6 7.3 5.3 5.5 5.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF805 PF05656.9 gi|325968429|ref|YP_004244621.1| - 4.9 6.9 6.9 8 6.3 4.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Claudin_3 PF06653.6 gi|325968429|ref|YP_004244621.1| - 6.8 6.3 10.3 6.4 6.4 6.4 1.3 1 1 0 1 1 1 0 Tight junction protein, Claudin-like DUF3671 PF12420.3 gi|325968429|ref|YP_004244621.1| - 7 6.6 8.9 8.8 6.3 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function SRP54 PF00448.17 gi|325968430|ref|YP_004244622.1| - 9.2e-67 224.2 0.0 1.2e-66 223.8 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|325968430|ref|YP_004244622.1| - 3.9e-08 33.2 0.2 7.2e-08 32.4 0.2 1.4 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_10 PF12846.2 gi|325968430|ref|YP_004244622.1| - 0.00059 19.3 0.0 0.0009 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|325968430|ref|YP_004244622.1| - 0.00085 19.0 0.0 0.0018 17.9 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|325968430|ref|YP_004244622.1| - 0.00096 18.6 0.1 0.0051 16.2 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|325968430|ref|YP_004244622.1| - 0.0026 17.3 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|325968430|ref|YP_004244622.1| - 0.0032 17.6 0.0 0.012 15.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain PPK2 PF03976.9 gi|325968430|ref|YP_004244622.1| - 0.016 14.4 0.0 0.042 13.1 0.0 1.6 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) AAA_23 PF13476.1 gi|325968430|ref|YP_004244622.1| - 0.019 15.3 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|325968430|ref|YP_004244622.1| - 0.025 14.1 0.0 0.052 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|325968430|ref|YP_004244622.1| - 0.026 14.4 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|325968430|ref|YP_004244622.1| - 0.027 14.1 0.0 0.059 13.0 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|325968430|ref|YP_004244622.1| - 0.028 14.1 0.1 0.065 13.0 0.1 1.6 1 1 0 1 1 1 0 Part of AAA domain AAA_11 PF13086.1 gi|325968430|ref|YP_004244622.1| - 0.029 13.9 0.0 0.051 13.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain Helicase_RecD PF05127.9 gi|325968430|ref|YP_004244622.1| - 0.029 13.9 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Helicase AAA_24 PF13479.1 gi|325968430|ref|YP_004244622.1| - 0.04 13.5 0.1 0.14 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|325968430|ref|YP_004244622.1| - 0.044 13.1 0.1 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.22 gi|325968430|ref|YP_004244622.1| - 0.078 13.2 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter NTPase_1 PF03266.10 gi|325968430|ref|YP_004244622.1| - 0.079 12.6 0.1 0.56 9.8 0.1 2.5 1 1 0 1 1 1 0 NTPase ArgK PF03308.11 gi|325968430|ref|YP_004244622.1| - 0.088 11.5 0.3 0.4 9.4 0.0 2.1 2 1 0 2 2 2 0 ArgK protein Zeta_toxin PF06414.7 gi|325968430|ref|YP_004244622.1| - 0.091 11.8 0.0 0.25 10.4 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin Rad17 PF03215.10 gi|325968430|ref|YP_004244622.1| - 0.097 11.3 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|325968430|ref|YP_004244622.1| - 0.11 12.6 0.1 0.32 11.1 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|325968430|ref|YP_004244622.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Prefoldin PF02996.12 gi|325968431|ref|YP_004244623.1| - 3.7e-16 58.8 0.1 6.3e-16 58.1 0.0 1.4 1 1 0 1 1 1 1 Prefoldin subunit Cortex-I_coil PF09304.5 gi|325968431|ref|YP_004244623.1| - 0.0021 18.0 1.8 0.2 11.7 0.2 2.1 2 0 0 2 2 2 1 Cortexillin I, coiled coil DUF3584 PF12128.3 gi|325968431|ref|YP_004244623.1| - 0.0037 14.6 0.7 0.23 8.7 0.3 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) Prefoldin_2 PF01920.15 gi|325968431|ref|YP_004244623.1| - 0.0089 15.7 0.5 4.6 7.0 0.0 2.4 1 1 1 2 2 2 2 Prefoldin subunit BLOC1_2 PF10046.4 gi|325968431|ref|YP_004244623.1| - 0.014 15.5 4.3 0.97 9.6 0.1 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.20 gi|325968431|ref|YP_004244623.1| - 0.015 15.4 1.5 0.039 14.1 0.4 2.0 1 1 1 2 2 2 0 Syntaxin NPV_P10 PF05531.7 gi|325968431|ref|YP_004244623.1| - 0.022 15.0 4.0 0.25 11.6 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Tektin PF03148.9 gi|325968431|ref|YP_004244623.1| - 0.022 13.3 2.1 0.18 10.3 0.0 2.0 2 0 0 2 2 2 0 Tektin family TPR_MLP1_2 PF07926.7 gi|325968431|ref|YP_004244623.1| - 0.03 14.0 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein APC_CDC26 PF10471.4 gi|325968431|ref|YP_004244623.1| - 0.045 14.4 1.0 0.13 12.9 0.1 2.1 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit 1 MerR-DNA-bind PF09278.6 gi|325968431|ref|YP_004244623.1| - 0.057 13.8 3.9 2.4 8.6 1.4 2.6 2 0 0 2 2 2 0 MerR, DNA binding Spc7 PF08317.6 gi|325968431|ref|YP_004244623.1| - 0.067 11.8 1.7 2 6.9 0.3 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF2479 PF10651.4 gi|325968431|ref|YP_004244623.1| - 0.068 12.6 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF2479) Osmo_CC PF08946.5 gi|325968431|ref|YP_004244623.1| - 0.2 11.7 4.9 3.9 7.5 0.1 3.1 2 2 1 3 3 3 0 Osmosensory transporter coiled coil Ribosomal_L18ae PF01775.12 gi|325968432|ref|YP_004244624.1| - 5.5e-10 39.2 0.2 7.9e-10 38.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain DUF1801 PF08818.6 gi|325968432|ref|YP_004244624.1| - 0.0018 18.3 0.0 0.0023 17.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DU1801) HTH_3 PF01381.17 gi|325968433|ref|YP_004244625.1| - 2.8e-12 46.2 0.7 5.4e-12 45.3 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|325968433|ref|YP_004244625.1| - 2e-10 40.5 0.2 3.9e-10 39.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|325968433|ref|YP_004244625.1| - 8.7e-09 35.4 0.1 4.3e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|325968433|ref|YP_004244625.1| - 1.3e-05 24.7 0.4 2.8e-05 23.6 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.5 gi|325968433|ref|YP_004244625.1| - 0.013 15.6 0.6 0.032 14.4 0.4 1.7 1 0 0 1 1 1 0 Archaeal TRASH domain MMR_HSR1 PF01926.18 gi|325968434|ref|YP_004244626.1| - 2.2e-15 56.6 0.1 4.8e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.1 gi|325968434|ref|YP_004244626.1| - 8.3e-14 51.4 0.0 1.8e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.13 gi|325968434|ref|YP_004244626.1| - 4.3e-06 26.0 0.5 1.3e-05 24.5 0.4 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.4 gi|325968434|ref|YP_004244626.1| - 0.00026 20.4 0.1 0.54 9.7 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Arf PF00025.16 gi|325968434|ref|YP_004244626.1| - 0.0012 18.1 0.1 0.0033 16.6 0.1 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family Ras PF00071.17 gi|325968434|ref|YP_004244626.1| - 0.0032 16.8 0.0 0.0061 15.9 0.0 1.5 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.22 gi|325968434|ref|YP_004244626.1| - 0.0053 16.2 0.0 2.6 7.4 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|325968434|ref|YP_004244626.1| - 0.014 14.8 1.0 0.41 10.0 0.1 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|325968434|ref|YP_004244626.1| - 0.019 15.4 0.0 0.052 14.0 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|325968434|ref|YP_004244626.1| - 0.02 14.1 0.0 0.039 13.1 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PIG-L PF02585.12 gi|325968434|ref|YP_004244626.1| - 0.032 14.7 0.0 0.1 13.1 0.0 1.8 2 0 0 2 2 2 0 GlcNAc-PI de-N-acetylase AAA_28 PF13521.1 gi|325968434|ref|YP_004244626.1| - 0.044 13.7 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|325968434|ref|YP_004244626.1| - 0.088 12.6 0.0 0.72 9.6 0.0 2.1 2 0 0 2 2 2 0 Dynamin family TFIIE_alpha PF02002.12 gi|325968435|ref|YP_004244627.1| - 4.8e-09 35.6 0.4 7.5e-09 35.0 0.3 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|325968435|ref|YP_004244627.1| - 0.0011 18.6 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|325968435|ref|YP_004244627.1| - 0.008 16.2 0.1 0.019 15.0 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|325968435|ref|YP_004244627.1| - 0.02 14.2 0.7 0.032 13.5 0.1 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|325968435|ref|YP_004244627.1| - 0.058 12.8 1.1 0.12 11.7 0.4 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RP-C PF03428.8 gi|325968435|ref|YP_004244627.1| - 0.059 12.8 0.0 0.16 11.3 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_Crp_2 PF13545.1 gi|325968435|ref|YP_004244627.1| - 0.075 12.8 0.1 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|325968435|ref|YP_004244627.1| - 0.1 12.2 0.8 0.26 10.9 0.1 1.9 2 0 0 2 2 2 0 HTH domain HTH_9 PF08221.6 gi|325968435|ref|YP_004244627.1| - 0.13 12.1 0.4 0.36 10.7 0.0 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.2 gi|325968435|ref|YP_004244627.1| - 0.13 12.0 0.3 0.24 11.2 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain SelB-wing_1 PF09105.5 gi|325968435|ref|YP_004244627.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix Pyr_redox_2 PF07992.9 gi|325968436|ref|YP_004244628.1| - 1.2e-36 126.5 7.1 4e-35 121.5 4.9 3.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|325968436|ref|YP_004244628.1| - 1.1e-23 83.3 6.0 2.3e-21 75.9 0.3 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|325968436|ref|YP_004244628.1| - 3.2e-15 56.1 0.1 2.3e-14 53.3 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|325968436|ref|YP_004244628.1| - 1.3e-13 50.6 6.3 1.3e-06 27.5 0.1 3.4 3 0 0 3 3 3 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|325968436|ref|YP_004244628.1| - 3.2e-09 37.1 0.8 7.3e-05 22.9 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|325968436|ref|YP_004244628.1| - 1.2e-08 34.8 0.9 0.0011 18.9 0.2 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|325968436|ref|YP_004244628.1| - 5.7e-08 31.6 5.8 0.057 11.8 0.3 4.3 3 1 1 4 4 4 4 HI0933-like protein FAD_binding_2 PF00890.19 gi|325968436|ref|YP_004244628.1| - 6.4e-05 21.9 4.6 0.043 12.6 0.6 3.7 4 0 0 4 4 4 2 FAD binding domain K_oxygenase PF13434.1 gi|325968436|ref|YP_004244628.1| - 0.00021 20.3 0.1 0.019 13.9 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|325968436|ref|YP_004244628.1| - 0.00039 19.4 0.4 0.013 14.4 0.2 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|325968436|ref|YP_004244628.1| - 0.0009 18.4 0.2 0.078 12.1 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.17 gi|325968436|ref|YP_004244628.1| - 0.0017 17.2 8.1 0.14 10.9 0.4 3.9 4 1 0 4 4 4 2 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|325968436|ref|YP_004244628.1| - 0.0024 18.1 2.3 1.6 9.0 0.2 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|325968436|ref|YP_004244628.1| - 0.0041 16.2 5.8 0.31 10.0 1.1 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|325968436|ref|YP_004244628.1| - 0.0048 16.6 4.4 6.5 6.5 0.1 4.0 3 1 1 4 4 4 1 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|325968436|ref|YP_004244628.1| - 0.019 14.9 0.7 0.83 9.6 0.0 2.7 3 0 0 3 3 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|325968436|ref|YP_004244628.1| - 0.04 13.3 0.1 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|325968436|ref|YP_004244628.1| - 0.049 13.2 1.5 2 7.9 0.2 2.6 3 0 0 3 3 2 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|325968436|ref|YP_004244628.1| - 0.89 8.5 4.6 5.1 6.0 0.2 2.5 2 1 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.9 gi|325968436|ref|YP_004244628.1| - 1.3 7.5 4.6 0.4 9.2 0.1 2.2 3 0 0 3 3 3 0 Tryptophan halogenase G_glu_transpept PF01019.16 gi|325968438|ref|YP_004244630.1| - 1.5e-126 422.9 0.0 1.8e-126 422.6 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peripla_BP_2 PF01497.13 gi|325968439|ref|YP_004244631.1| - 2.1e-27 95.7 0.0 2.8e-27 95.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|325968440|ref|YP_004244632.1| - 3.5e-69 233.0 42.1 4.1e-69 232.7 29.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|325968440|ref|YP_004244632.1| - 7.4e-05 22.1 32.9 0.00024 20.4 22.1 2.1 1 1 0 1 1 1 1 ABC 3 transport family Gly-zipper_YMGG PF13441.1 gi|325968440|ref|YP_004244632.1| - 0.64 9.5 5.2 0.27 10.7 0.8 2.1 1 1 1 2 2 2 0 YMGG-like Gly-zipper ABC_tran PF00005.22 gi|325968441|ref|YP_004244633.1| - 1.2e-25 90.4 0.0 1.5e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968441|ref|YP_004244633.1| - 1.6e-15 57.8 1.0 1e-07 32.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325968441|ref|YP_004244633.1| - 5.5e-09 35.5 0.1 0.001 18.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|325968441|ref|YP_004244633.1| - 1.5e-08 34.0 0.1 0.0035 16.4 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|325968441|ref|YP_004244633.1| - 3.8e-07 30.3 0.8 2.5e-06 27.6 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|325968441|ref|YP_004244633.1| - 4.6e-07 30.3 0.2 5.6e-07 30.0 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|325968441|ref|YP_004244633.1| - 6.5e-05 22.8 0.0 0.0035 17.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|325968441|ref|YP_004244633.1| - 0.00011 21.6 0.0 0.015 14.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|325968441|ref|YP_004244633.1| - 0.00023 20.6 0.0 0.00042 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|325968441|ref|YP_004244633.1| - 0.00047 19.9 0.0 0.00057 19.6 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|325968441|ref|YP_004244633.1| - 0.00076 19.5 0.0 0.0011 19.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|325968441|ref|YP_004244633.1| - 0.00092 17.9 0.1 0.045 12.3 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class NB-ARC PF00931.17 gi|325968441|ref|YP_004244633.1| - 0.0014 17.5 0.0 0.0047 15.8 0.0 1.7 1 1 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|325968441|ref|YP_004244633.1| - 0.002 18.3 0.1 0.014 15.5 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|325968441|ref|YP_004244633.1| - 0.0024 17.3 0.1 0.0063 15.9 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|325968441|ref|YP_004244633.1| - 0.0034 17.0 0.3 0.011 15.3 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|325968441|ref|YP_004244633.1| - 0.0038 16.9 0.2 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain cobW PF02492.14 gi|325968441|ref|YP_004244633.1| - 0.005 16.2 0.1 0.01 15.2 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|325968441|ref|YP_004244633.1| - 0.0085 16.9 0.3 0.026 15.3 0.1 1.9 1 1 1 2 2 2 1 AAA domain MobB PF03205.9 gi|325968441|ref|YP_004244633.1| - 0.0098 15.6 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|325968441|ref|YP_004244633.1| - 0.027 13.8 0.1 0.083 12.2 0.0 1.7 2 0 0 2 2 2 0 MutS domain V AAA_24 PF13479.1 gi|325968441|ref|YP_004244633.1| - 0.039 13.5 0.1 0.34 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|325968441|ref|YP_004244633.1| - 0.042 12.5 0.0 0.06 11.9 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein SbcCD_C PF13558.1 gi|325968441|ref|YP_004244633.1| - 0.047 13.6 0.0 0.41 10.5 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.13 gi|325968441|ref|YP_004244633.1| - 0.06 12.8 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|325968441|ref|YP_004244633.1| - 0.068 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RecA PF00154.16 gi|325968441|ref|YP_004244633.1| - 0.076 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_35 PF14516.1 gi|325968441|ref|YP_004244633.1| - 0.077 11.6 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|325968441|ref|YP_004244633.1| - 0.08 12.8 0.0 0.16 11.8 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|325968441|ref|YP_004244633.1| - 0.09 12.3 0.0 0.25 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.3 gi|325968441|ref|YP_004244633.1| - 0.12 9.6 0.1 0.17 9.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|325968441|ref|YP_004244633.1| - 0.14 10.6 0.1 0.21 10.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|325968441|ref|YP_004244633.1| - 0.17 11.4 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|325968441|ref|YP_004244633.1| - 0.17 11.0 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AFOR_C PF01314.13 gi|325968442|ref|YP_004244634.1| - 1.3e-115 386.1 0.1 1.6e-115 385.8 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|325968442|ref|YP_004244634.1| - 1.1e-72 243.6 0.0 2.6e-72 242.3 0.0 1.6 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Cob_adeno_trans PF01923.13 gi|325968443|ref|YP_004244635.1| - 0.0025 17.6 0.0 0.0042 16.8 0.0 1.3 1 1 0 1 1 1 1 Cobalamin adenosyltransferase MM_CoA_mutase PF01642.17 gi|325968444|ref|YP_004244636.1| - 3.9e-187 622.4 0.0 4.5e-187 622.2 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase RE_AccI PF09545.5 gi|325968444|ref|YP_004244636.1| - 0.0058 15.2 0.0 0.0092 14.5 0.0 1.2 1 0 0 1 1 1 1 AccI restriction endonuclease B12-binding PF02310.14 gi|325968445|ref|YP_004244637.1| - 5.8e-24 84.2 0.2 6.7e-24 84.0 0.2 1.1 1 0 0 1 1 1 1 B12 binding domain PGM_PMM_I PF02878.11 gi|325968445|ref|YP_004244637.1| - 0.00083 18.8 0.0 0.0012 18.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NMO PF03060.10 gi|325968445|ref|YP_004244637.1| - 0.045 12.8 0.6 0.67 9.0 0.1 2.0 1 1 1 2 2 2 0 Nitronate monooxygenase FMN_dh PF01070.13 gi|325968445|ref|YP_004244637.1| - 0.1 11.4 0.2 0.38 9.5 0.2 1.8 1 1 0 1 1 1 0 FMN-dependent dehydrogenase Nitro_FeMo-Co PF02579.12 gi|325968445|ref|YP_004244637.1| - 0.14 12.2 0.2 14 5.8 0.0 2.2 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Antimicrobial20 PF08256.6 gi|325968445|ref|YP_004244637.1| - 4.4 7.8 7.1 1.3 9.5 1.8 2.6 2 0 0 2 2 2 0 Aurein-like antibiotic peptide ArgK PF03308.11 gi|325968446|ref|YP_004244638.1| - 5.5e-74 248.3 0.0 4.5e-73 245.3 0.0 2.0 2 0 0 2 2 2 1 ArgK protein Glyoxalase_4 PF13669.1 gi|325968446|ref|YP_004244638.1| - 1.1e-21 76.8 0.0 2.1e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|325968446|ref|YP_004244638.1| - 9e-11 41.9 0.0 1.4e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|325968446|ref|YP_004244638.1| - 1e-09 38.4 0.0 2e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|325968446|ref|YP_004244638.1| - 2.1e-09 37.9 0.0 0.0012 19.4 0.0 2.4 1 1 1 2 2 2 2 Glyoxalase-like domain cobW PF02492.14 gi|325968446|ref|YP_004244638.1| - 2.6e-08 33.5 0.2 3.3e-07 29.9 0.1 2.5 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|325968446|ref|YP_004244638.1| - 8.1e-05 22.9 0.0 0.00015 22.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|325968446|ref|YP_004244638.1| - 0.00022 22.0 1.0 0.002 18.9 0.2 2.7 3 0 0 3 3 2 1 AAA domain T2SE PF00437.15 gi|325968446|ref|YP_004244638.1| - 0.00032 19.6 0.0 0.0006 18.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|325968446|ref|YP_004244638.1| - 0.00038 20.7 0.9 0.023 15.0 0.4 2.8 2 1 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|325968446|ref|YP_004244638.1| - 0.00066 19.5 0.1 0.0017 18.2 0.0 1.8 2 0 0 2 2 1 1 Domain of unknown function DUF87 KAP_NTPase PF07693.9 gi|325968446|ref|YP_004244638.1| - 0.00095 18.2 0.0 0.0017 17.4 0.0 1.3 1 0 0 1 1 1 1 KAP family P-loop domain AAA_14 PF13173.1 gi|325968446|ref|YP_004244638.1| - 0.0014 18.5 0.0 0.004 17.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|325968446|ref|YP_004244638.1| - 0.0015 17.9 0.0 0.0028 17.0 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|325968446|ref|YP_004244638.1| - 0.0017 18.5 0.0 0.0049 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325968446|ref|YP_004244638.1| - 0.0018 18.3 0.0 0.0049 16.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|325968446|ref|YP_004244638.1| - 0.0024 17.5 0.1 0.0074 16.0 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain NTPase_1 PF03266.10 gi|325968446|ref|YP_004244638.1| - 0.0025 17.5 0.1 0.0057 16.3 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_29 PF13555.1 gi|325968446|ref|YP_004244638.1| - 0.0029 17.0 0.0 0.0071 15.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|325968446|ref|YP_004244638.1| - 0.0031 16.9 0.0 0.013 14.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|325968446|ref|YP_004244638.1| - 0.0053 16.6 0.1 0.013 15.4 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|325968446|ref|YP_004244638.1| - 0.0054 16.2 0.0 0.019 14.4 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|325968446|ref|YP_004244638.1| - 0.0081 15.8 0.0 0.032 13.9 0.0 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|325968446|ref|YP_004244638.1| - 0.011 15.8 0.1 0.032 14.3 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_33 PF13671.1 gi|325968446|ref|YP_004244638.1| - 0.029 14.2 0.0 0.068 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|325968446|ref|YP_004244638.1| - 0.037 13.7 0.1 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|325968446|ref|YP_004244638.1| - 0.041 13.3 0.0 0.064 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|325968446|ref|YP_004244638.1| - 0.041 13.5 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA PF00004.24 gi|325968446|ref|YP_004244638.1| - 0.045 13.9 0.0 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) GTP_EFTU PF00009.22 gi|325968446|ref|YP_004244638.1| - 0.05 13.0 0.1 2.3 7.6 0.0 2.2 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain TrwB_AAD_bind PF10412.4 gi|325968446|ref|YP_004244638.1| - 0.063 11.8 0.0 0.11 11.0 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Mg_chelatase PF01078.16 gi|325968446|ref|YP_004244638.1| - 0.065 12.3 0.0 0.14 11.2 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|325968446|ref|YP_004244638.1| - 0.08 12.0 0.1 0.23 10.5 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.1 gi|325968446|ref|YP_004244638.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|325968446|ref|YP_004244638.1| - 0.12 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|325968446|ref|YP_004244638.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PRK PF00485.13 gi|325968446|ref|YP_004244638.1| - 0.13 11.8 0.0 0.31 10.5 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA12 PF10443.4 gi|325968446|ref|YP_004244638.1| - 0.14 10.6 0.0 0.27 9.6 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein DUF2070 PF09843.4 gi|325968447|ref|YP_004244639.1| - 5e-28 97.7 0.0 7e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2153 PF09921.4 gi|325968448|ref|YP_004244640.1| - 4.2e-37 126.5 1.0 5e-37 126.3 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Penicillinase_R PF03965.11 gi|325968449|ref|YP_004244641.1| - 2.5e-11 43.6 0.1 3.2e-11 43.3 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor FUR PF01475.14 gi|325968449|ref|YP_004244641.1| - 0.026 14.4 0.2 0.032 14.1 0.1 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.14 gi|325968449|ref|YP_004244641.1| - 0.029 14.0 0.1 0.057 13.1 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|325968449|ref|YP_004244641.1| - 0.036 13.8 0.1 0.057 13.1 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Sulfolobus_pRN PF05584.6 gi|325968449|ref|YP_004244641.1| - 0.076 12.9 0.3 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein TFIIE_alpha PF02002.12 gi|325968449|ref|YP_004244641.1| - 0.098 12.1 0.6 0.15 11.5 0.4 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit Met_10 PF02475.11 gi|325968450|ref|YP_004244642.1| - 4.7e-54 183.0 0.0 5.7e-54 182.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|325968450|ref|YP_004244642.1| - 0.0012 18.4 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_26 PF13659.1 gi|325968450|ref|YP_004244642.1| - 0.0018 18.2 0.0 0.0033 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|325968450|ref|YP_004244642.1| - 0.0029 16.5 0.0 0.0035 16.3 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase ATP-synt_ab PF00006.20 gi|325968451|ref|YP_004244643.1| - 5.8e-61 205.7 0.0 7.6e-61 205.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|325968451|ref|YP_004244643.1| - 5.4e-09 36.5 0.0 9.3e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|325968451|ref|YP_004244643.1| - 6.5e-07 29.4 1.7 1.2e-06 28.6 1.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RHH_1 PF01402.16 gi|325968452|ref|YP_004244644.1| - 1.3e-09 37.5 0.0 2.2e-09 36.8 0.0 1.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|325968452|ref|YP_004244644.1| - 0.048 13.8 0.0 0.056 13.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) Flavoprotein PF02441.14 gi|325968453|ref|YP_004244645.1| - 1.2e-32 112.2 0.0 1.8e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein ATP_bind_3 PF01171.15 gi|325968454|ref|YP_004244646.1| - 2.9e-11 43.1 0.0 6.1e-11 42.1 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|325968454|ref|YP_004244646.1| - 0.00011 22.0 0.0 0.00019 21.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|325968454|ref|YP_004244646.1| - 0.00039 19.7 1.5 0.00055 19.3 0.1 2.0 2 0 0 2 2 2 1 RecR protein Asn_synthase PF00733.16 gi|325968454|ref|YP_004244646.1| - 0.052 13.0 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase tRNA_Me_trans PF03054.11 gi|325968454|ref|YP_004244646.1| - 0.06 11.8 0.0 0.095 11.2 0.0 1.3 1 1 0 1 1 1 0 tRNA methyl transferase DZR PF12773.2 gi|325968454|ref|YP_004244646.1| - 0.43 10.4 6.3 7.3 6.4 0.2 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-B_box PF00643.19 gi|325968454|ref|YP_004244646.1| - 1 9.2 4.1 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 B-box zinc finger tRNA-synt_1 PF00133.17 gi|325968455|ref|YP_004244647.1| - 2.5e-120 402.2 0.0 2.3e-119 399.1 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|325968455|ref|YP_004244647.1| - 2.7e-30 105.3 0.0 1.1e-15 57.2 0.0 3.4 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|325968455|ref|YP_004244647.1| - 4.2e-28 98.0 0.0 8.4e-28 97.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|325968455|ref|YP_004244647.1| - 0.004 16.4 0.0 0.071 12.4 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|325968455|ref|YP_004244647.1| - 0.033 12.8 0.0 1.1 7.9 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|325968455|ref|YP_004244647.1| - 0.23 10.2 0.0 0.55 8.9 0.0 1.5 2 0 0 2 2 2 0 tRNA synthetases class I (R) EF1_GNE PF00736.14 gi|325968457|ref|YP_004244649.1| - 4.9e-18 64.6 0.3 5.3e-18 64.5 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Peptidase_M10 PF00413.19 gi|325968457|ref|YP_004244649.1| - 0.11 12.2 0.0 0.13 11.9 0.0 1.0 1 0 0 1 1 1 0 Matrixin AAA PF00004.24 gi|325968458|ref|YP_004244650.1| - 2.2e-99 328.8 0.0 6.8e-49 165.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|325968458|ref|YP_004244650.1| - 2.8e-29 100.9 1.0 5.2e-28 96.8 0.7 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|325968458|ref|YP_004244650.1| - 5.7e-15 55.0 0.0 4e-07 29.3 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|325968458|ref|YP_004244650.1| - 1.1e-13 51.4 0.4 3.9e-05 23.7 0.1 4.2 2 2 0 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|325968458|ref|YP_004244650.1| - 2.2e-13 50.1 0.5 2.1e-05 24.3 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|325968458|ref|YP_004244650.1| - 6.5e-13 48.9 0.0 2.9e-06 27.2 0.0 3.3 3 1 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|325968458|ref|YP_004244650.1| - 1.6e-12 47.7 0.0 1.5e-05 25.0 0.0 3.3 2 1 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|325968458|ref|YP_004244650.1| - 1.8e-12 48.1 0.7 1.2e-05 26.0 0.0 3.7 3 2 0 4 4 2 2 AAA domain AAA_14 PF13173.1 gi|325968458|ref|YP_004244650.1| - 7.3e-12 45.3 0.0 9.4e-06 25.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|325968458|ref|YP_004244650.1| - 1.6e-11 44.2 0.0 6e-05 22.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|325968458|ref|YP_004244650.1| - 7.1e-10 38.3 0.5 2.4e-09 36.6 0.3 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 IstB_IS21 PF01695.12 gi|325968458|ref|YP_004244650.1| - 2.1e-09 37.0 0.5 0.0025 17.2 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein TIP49 PF06068.8 gi|325968458|ref|YP_004244650.1| - 5.7e-09 35.1 4.5 0.00066 18.5 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|325968458|ref|YP_004244650.1| - 1.4e-08 34.0 0.2 0.0028 16.7 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin AAA_18 PF13238.1 gi|325968458|ref|YP_004244650.1| - 2e-08 34.5 0.0 0.0096 16.2 0.0 3.4 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.1 gi|325968458|ref|YP_004244650.1| - 2.9e-08 33.8 0.0 0.0037 17.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|325968458|ref|YP_004244650.1| - 4.1e-08 32.8 3.2 0.0027 17.4 0.3 3.0 2 0 0 2 2 2 2 Part of AAA domain UFD1 PF03152.9 gi|325968458|ref|YP_004244650.1| - 1.5e-07 30.7 1.1 2.7e-07 29.8 0.8 1.4 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 Mg_chelatase PF01078.16 gi|325968458|ref|YP_004244650.1| - 3.7e-07 29.5 0.9 0.022 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|325968458|ref|YP_004244650.1| - 1.2e-06 28.1 0.1 0.11 12.0 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.11 gi|325968458|ref|YP_004244650.1| - 2e-06 27.1 0.5 0.056 12.6 0.1 2.7 2 0 0 2 2 2 2 PhoH-like protein AAA_25 PF13481.1 gi|325968458|ref|YP_004244650.1| - 4.1e-06 26.3 8.7 0.05 12.9 0.4 4.3 2 2 1 3 3 3 2 AAA domain Sigma54_activ_2 PF14532.1 gi|325968458|ref|YP_004244650.1| - 6.1e-06 26.3 0.0 0.074 13.0 0.0 2.6 2 0 0 2 2 2 2 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|325968458|ref|YP_004244650.1| - 1e-05 25.6 0.0 0.19 11.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase DUF815 PF05673.8 gi|325968458|ref|YP_004244650.1| - 1.5e-05 24.0 0.0 0.1 11.5 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) KaiC PF06745.8 gi|325968458|ref|YP_004244650.1| - 1.7e-05 24.0 2.8 0.19 10.8 0.0 3.8 2 2 0 3 3 3 2 KaiC ABC_tran PF00005.22 gi|325968458|ref|YP_004244650.1| - 1.8e-05 25.0 0.0 0.18 12.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Arch_ATPase PF01637.13 gi|325968458|ref|YP_004244650.1| - 2.3e-05 24.1 0.7 0.17 11.5 0.1 4.2 2 2 1 3 3 3 1 Archaeal ATPase AAA_24 PF13479.1 gi|325968458|ref|YP_004244650.1| - 2.6e-05 23.9 2.7 0.3 10.6 0.0 3.8 4 0 0 4 4 4 2 AAA domain MCM PF00493.18 gi|325968458|ref|YP_004244650.1| - 7.3e-05 21.7 0.0 0.94 8.2 0.0 3.4 3 0 0 3 3 3 1 MCM2/3/5 family NACHT PF05729.7 gi|325968458|ref|YP_004244650.1| - 0.0001 22.0 0.7 0.76 9.4 0.1 3.6 4 0 0 4 4 4 1 NACHT domain AAA_3 PF07726.6 gi|325968458|ref|YP_004244650.1| - 0.00019 21.0 0.0 0.74 9.4 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.20 gi|325968458|ref|YP_004244650.1| - 0.00026 20.5 0.0 0.48 9.8 0.0 2.6 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain ResIII PF04851.10 gi|325968458|ref|YP_004244650.1| - 0.00058 19.7 0.0 0.63 9.8 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Parvo_NS1 PF01057.12 gi|325968458|ref|YP_004244650.1| - 0.00068 18.5 0.2 0.94 8.2 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|325968458|ref|YP_004244650.1| - 0.00069 19.3 0.0 0.53 9.8 0.0 3.2 4 0 0 4 4 2 1 Bacterial dnaA protein Guanylate_kin PF00625.16 gi|325968458|ref|YP_004244650.1| - 0.0007 19.0 0.3 20 4.5 0.0 4.5 2 2 2 4 4 4 0 Guanylate kinase T2SE PF00437.15 gi|325968458|ref|YP_004244650.1| - 0.00084 18.3 0.2 1.4 7.7 0.0 2.8 2 2 0 2 2 2 2 Type II/IV secretion system protein AAA_11 PF13086.1 gi|325968458|ref|YP_004244650.1| - 0.0017 17.9 0.0 2.5 7.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|325968458|ref|YP_004244650.1| - 0.0017 17.3 0.0 1.1 8.1 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|325968458|ref|YP_004244650.1| - 0.0025 17.7 0.0 3 7.7 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AAA_30 PF13604.1 gi|325968458|ref|YP_004244650.1| - 0.0033 17.0 0.2 2.4 7.6 0.0 3.0 3 0 0 3 3 2 1 AAA domain UPF0079 PF02367.12 gi|325968458|ref|YP_004244650.1| - 0.0077 15.8 0.0 6.4 6.4 0.0 2.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Vps4_C PF09336.5 gi|325968458|ref|YP_004244650.1| - 0.0086 15.9 0.0 0.5 10.3 0.0 3.0 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain NB-ARC PF00931.17 gi|325968458|ref|YP_004244650.1| - 0.0099 14.7 0.1 4.2 6.1 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain PduV-EutP PF10662.4 gi|325968458|ref|YP_004244650.1| - 0.014 14.9 0.0 2.6 7.5 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|325968458|ref|YP_004244650.1| - 0.021 14.3 0.0 6.1 6.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Miro PF08477.8 gi|325968458|ref|YP_004244650.1| - 0.023 15.1 0.0 6.3 7.3 0.0 3.1 3 0 0 3 3 2 0 Miro-like protein SRPRB PF09439.5 gi|325968458|ref|YP_004244650.1| - 0.026 13.7 0.0 3.1 6.9 0.0 2.7 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Viral_helicase1 PF01443.13 gi|325968458|ref|YP_004244650.1| - 0.035 13.6 0.0 0.38 10.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase B5 PF03484.10 gi|325968458|ref|YP_004244650.1| - 0.045 13.5 0.5 4.3 7.2 0.1 2.9 2 0 0 2 2 2 0 tRNA synthetase B5 domain cobW PF02492.14 gi|325968458|ref|YP_004244650.1| - 0.052 12.9 0.3 14 5.1 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|325968458|ref|YP_004244650.1| - 0.059 13.0 8.4 5.5 6.6 0.0 4.7 4 1 0 5 5 5 0 NTPase IPT PF01745.11 gi|325968458|ref|YP_004244650.1| - 0.12 11.5 0.3 12 4.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase AAA_10 PF12846.2 gi|325968458|ref|YP_004244650.1| - 0.22 10.9 4.5 17 4.6 0.0 3.9 3 1 0 3 3 3 0 AAA-like domain XPG_I PF00867.13 gi|325968460|ref|YP_004244652.1| - 8e-22 77.1 0.0 1.4e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|325968460|ref|YP_004244652.1| - 1.9e-19 69.7 0.0 3.8e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|325968460|ref|YP_004244652.1| - 5e-07 29.8 0.0 1.2e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.1 gi|325968460|ref|YP_004244652.1| - 0.00099 19.2 0.0 0.0034 17.5 0.0 2.0 1 1 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|325968460|ref|YP_004244652.1| - 0.028 14.2 0.0 0.1 12.5 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1227 PF06777.6 gi|325968460|ref|YP_004244652.1| - 0.12 12.0 0.0 0.47 10.1 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1227) NADHdh PF00146.16 gi|325968461|ref|YP_004244653.1| - 8.1e-59 199.2 22.2 1.2e-58 198.6 15.4 1.3 1 0 0 1 1 1 1 NADH dehydrogenase LRR19-TM PF15176.1 gi|325968461|ref|YP_004244653.1| - 0.091 12.4 0.3 0.23 11.1 0.2 1.7 1 0 0 1 1 1 0 Leucine-rich repeat family 19 TM domain zf-C2H2 PF00096.21 gi|325968462|ref|YP_004244654.1| - 0.00018 21.6 0.0 0.00039 20.6 0.0 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|325968462|ref|YP_004244654.1| - 0.00067 19.2 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 zinc-finger of a C2HC-type zf-C2H2_4 PF13894.1 gi|325968462|ref|YP_004244654.1| - 0.001 19.2 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|325968462|ref|YP_004244654.1| - 0.012 15.7 0.0 0.028 14.5 0.0 1.6 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding zf-Di19 PF05605.7 gi|325968462|ref|YP_004244654.1| - 0.017 15.1 0.1 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding RGS PF00615.14 gi|325968462|ref|YP_004244654.1| - 0.13 12.4 0.6 0.31 11.1 0.4 1.6 1 1 0 1 1 1 0 Regulator of G protein signaling domain DUF3581 PF12119.3 gi|325968464|ref|YP_004244656.1| - 0.017 14.3 0.1 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3581) CHD5 PF04420.9 gi|325968464|ref|YP_004244656.1| - 0.045 13.3 1.2 0.065 12.8 0.8 1.2 1 0 0 1 1 1 0 CHD5-like protein WHEP-TRS PF00458.15 gi|325968464|ref|YP_004244656.1| - 0.049 13.2 1.0 0.091 12.4 0.7 1.5 1 0 0 1 1 1 0 WHEP-TRS domain Sirohm_synth_C PF14823.1 gi|325968464|ref|YP_004244656.1| - 0.054 12.8 0.4 0.12 11.7 0.3 1.6 1 0 0 1 1 1 0 Sirohaem biosynthesis protein C-terminal DUF4619 PF15398.1 gi|325968464|ref|YP_004244656.1| - 0.12 11.8 6.0 0.13 11.6 4.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4619) SPT16 PF08644.6 gi|325968464|ref|YP_004244656.1| - 0.12 12.1 1.5 0.17 11.7 1.1 1.2 1 0 0 1 1 1 0 FACT complex subunit (SPT16/CDC68) Snapin_Pallidin PF14712.1 gi|325968464|ref|YP_004244656.1| - 0.13 12.6 4.8 0.25 11.6 3.4 1.6 1 1 0 1 1 1 0 Snapin/Pallidin DUF1818 PF08848.6 gi|325968464|ref|YP_004244656.1| - 0.15 12.1 4.2 3 7.9 0.1 2.6 1 1 1 3 3 3 0 Domain of unknown function (DUF1818) Vps51 PF08700.6 gi|325968464|ref|YP_004244656.1| - 0.29 10.9 3.7 0.35 10.7 1.2 2.3 1 1 1 2 2 2 0 Vps51/Vps67 Med30 PF11315.3 gi|325968464|ref|YP_004244656.1| - 0.51 10.4 7.1 1.1 9.3 0.9 2.2 1 1 1 2 2 2 0 Mediator complex subunit 30 FlaC_arch PF05377.6 gi|325968464|ref|YP_004244656.1| - 0.8 9.6 4.1 0.5 10.3 0.5 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) BRE1 PF08647.6 gi|325968464|ref|YP_004244656.1| - 1.1 9.2 6.4 3.3 7.7 3.7 2.0 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase RNA_pol_Rpb2_4 PF04566.8 gi|325968464|ref|YP_004244656.1| - 2.2 8.1 5.2 2 8.2 0.3 2.3 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 4 GvpK PF05121.7 gi|325968464|ref|YP_004244656.1| - 6.5 6.6 8.1 1.5 8.6 3.0 1.8 1 1 1 2 2 2 0 Gas vesicle protein K AA_permease_2 PF13520.1 gi|325968465|ref|YP_004244657.1| - 2.5e-36 125.1 54.1 2.5e-36 125.1 37.5 2.6 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|325968465|ref|YP_004244657.1| - 2.1e-21 75.8 41.5 2.1e-21 75.8 28.8 2.8 2 1 0 2 2 2 1 Amino acid permease AA_permease_2 PF13520.1 gi|325968466|ref|YP_004244658.1| - 2e-40 138.6 66.9 2e-40 138.6 46.4 2.1 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|325968466|ref|YP_004244658.1| - 5.1e-22 77.8 70.2 5.1e-22 77.8 48.7 2.3 1 1 2 3 3 3 1 Amino acid permease Oxidored_q3 PF00499.15 gi|325968466|ref|YP_004244658.1| - 0.00023 20.9 3.7 0.00023 20.9 2.6 5.9 3 1 1 4 4 4 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Pyr_redox_dim PF02852.17 gi|325968467|ref|YP_004244659.1| - 3.1e-28 98.0 0.1 5.7e-28 97.1 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.9 gi|325968467|ref|YP_004244659.1| - 9.3e-28 97.4 9.5 8.9e-16 58.3 0.1 4.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|325968467|ref|YP_004244659.1| - 1.7e-20 73.1 7.1 1.1e-19 70.5 0.5 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|325968467|ref|YP_004244659.1| - 1.2e-12 47.4 8.3 2.7e-09 36.3 0.1 3.5 2 1 1 3 3 3 3 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|325968467|ref|YP_004244659.1| - 8.2e-09 35.8 0.1 9.5e-08 32.3 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|325968467|ref|YP_004244659.1| - 5.1e-07 29.0 2.6 0.00052 19.1 0.2 2.5 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.9 gi|325968467|ref|YP_004244659.1| - 1.1e-06 27.4 9.3 0.0013 17.2 0.3 3.8 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.19 gi|325968467|ref|YP_004244659.1| - 1.5e-06 27.4 16.2 0.054 12.3 0.0 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|325968467|ref|YP_004244659.1| - 6e-06 25.3 11.4 1.2e-05 24.4 0.5 4.0 3 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.2 gi|325968467|ref|YP_004244659.1| - 6.1e-06 25.5 4.4 0.00014 21.0 0.0 3.3 4 0 0 4 4 4 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|325968467|ref|YP_004244659.1| - 7e-06 25.3 7.2 0.0046 16.0 0.9 2.3 2 0 0 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|325968467|ref|YP_004244659.1| - 0.0027 17.1 0.3 0.0027 17.1 0.2 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.7 gi|325968467|ref|YP_004244659.1| - 0.015 14.2 5.8 0.23 10.3 0.1 3.0 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|325968467|ref|YP_004244659.1| - 0.032 14.2 6.6 0.26 11.3 2.0 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|325968467|ref|YP_004244659.1| - 0.041 13.4 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|325968467|ref|YP_004244659.1| - 0.082 13.1 0.8 8.8 6.6 0.1 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|325968467|ref|YP_004244659.1| - 0.093 12.3 0.2 0.093 12.3 0.2 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiF PF00899.16 gi|325968467|ref|YP_004244659.1| - 4.3 7.1 8.6 2.6 7.8 0.4 3.1 3 0 0 3 3 3 0 ThiF family AAA_5 PF07728.9 gi|325968468|ref|YP_004244660.1| - 8.3e-27 93.6 0.1 3.8e-26 91.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|325968468|ref|YP_004244660.1| - 3.1e-06 27.4 0.1 2.3e-05 24.6 0.0 2.4 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|325968468|ref|YP_004244660.1| - 9e-06 25.3 0.0 2.2e-05 24.0 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|325968468|ref|YP_004244660.1| - 0.0011 18.4 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|325968468|ref|YP_004244660.1| - 0.0016 19.2 2.6 0.02 15.6 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|325968468|ref|YP_004244660.1| - 0.003 17.5 0.1 0.0096 15.9 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_11 PF13086.1 gi|325968468|ref|YP_004244660.1| - 0.0036 16.9 0.0 0.0098 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF4363 PF14276.1 gi|325968468|ref|YP_004244660.1| - 0.016 14.9 0.3 0.016 14.9 0.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4363) T2SE PF00437.15 gi|325968468|ref|YP_004244660.1| - 0.02 13.7 0.0 0.063 12.1 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein SusD-like_2 PF12771.2 gi|325968468|ref|YP_004244660.1| - 0.026 12.9 0.0 0.042 12.2 0.0 1.3 1 0 0 1 1 1 0 Starch-binding associating with outer membrane Ribonuc_L-PSP PF01042.16 gi|325968468|ref|YP_004244660.1| - 0.027 14.2 0.0 0.4 10.4 0.0 2.6 3 0 0 3 3 2 0 Endoribonuclease L-PSP Mg_chelatase PF01078.16 gi|325968468|ref|YP_004244660.1| - 0.033 13.3 0.0 0.077 12.1 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|325968468|ref|YP_004244660.1| - 0.04 13.6 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_28 PF13521.1 gi|325968468|ref|YP_004244660.1| - 0.045 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|325968468|ref|YP_004244660.1| - 0.085 12.4 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RuvB_N PF05496.7 gi|325968468|ref|YP_004244660.1| - 0.085 11.8 0.8 0.42 9.6 0.0 2.6 2 1 1 3 3 3 0 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|325968468|ref|YP_004244660.1| - 0.085 12.9 3.2 0.99 9.5 0.1 3.1 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|325968468|ref|YP_004244660.1| - 0.11 12.2 0.0 1.1 8.9 0.0 2.4 2 1 0 2 2 2 0 NTPase Methyltransf_31 PF13847.1 gi|325968468|ref|YP_004244660.1| - 0.11 12.0 0.3 0.91 9.1 0.1 2.3 2 0 0 2 2 2 0 Methyltransferase domain AAA_25 PF13481.1 gi|325968468|ref|YP_004244660.1| - 0.15 11.4 0.3 0.49 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain MutS_III PF05192.13 gi|325968468|ref|YP_004244660.1| - 0.41 10.4 3.0 1.3 8.7 1.2 2.2 1 1 1 2 2 2 0 MutS domain III Glyco_tranf_2_3 PF13641.1 gi|325968470|ref|YP_004244662.1| - 8.5e-18 64.9 0.1 1.2e-17 64.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|325968470|ref|YP_004244662.1| - 2.5e-17 62.7 0.0 5.2e-17 61.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|325968470|ref|YP_004244662.1| - 3.1e-15 56.2 0.0 4.6e-15 55.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|325968470|ref|YP_004244662.1| - 0.017 14.8 14.4 0.0073 16.0 7.9 2.1 2 1 0 2 2 2 0 Glycosyl transferase family group 2 NAD_binding_2 PF03446.10 gi|325968471|ref|YP_004244663.1| - 6.4e-39 133.4 0.1 8.6e-39 132.9 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|325968471|ref|YP_004244663.1| - 4.8e-27 94.4 0.0 7.6e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|325968471|ref|YP_004244663.1| - 2.3e-05 23.6 0.0 3.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|325968471|ref|YP_004244663.1| - 7.8e-05 23.0 0.1 0.00035 20.9 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|325968471|ref|YP_004244663.1| - 0.00037 19.8 0.0 0.00082 18.7 0.0 1.5 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|325968471|ref|YP_004244663.1| - 0.00043 20.3 0.0 0.00073 19.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|325968471|ref|YP_004244663.1| - 0.0051 17.0 0.7 1 9.6 0.1 2.3 2 0 0 2 2 2 2 Putative NAD(P)-binding GFO_IDH_MocA PF01408.17 gi|325968471|ref|YP_004244663.1| - 0.014 15.8 0.0 0.027 14.9 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Raffinose_syn PF05691.7 gi|325968473|ref|YP_004244665.1| - 5.1e-44 149.9 0.5 2.5e-25 88.1 0.0 3.1 1 1 3 4 4 4 2 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.13 gi|325968473|ref|YP_004244665.1| - 9.2e-09 34.4 0.4 1.5e-08 33.7 0.3 1.2 1 0 0 1 1 1 1 Melibiase Glyco_hydro_31 PF01055.21 gi|325968473|ref|YP_004244665.1| - 5.1e-05 22.2 0.0 0.00023 20.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 31 MS_channel PF00924.13 gi|325968474|ref|YP_004244666.1| - 3.6e-16 59.1 2.5 3.6e-16 59.1 1.8 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF4117 PF13491.1 gi|325968474|ref|YP_004244666.1| - 3.9 6.8 11.3 0.25 10.7 2.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) AFOR_C PF01314.13 gi|325968475|ref|YP_004244667.1| - 2.6e-122 408.2 0.0 3.2e-122 407.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|325968475|ref|YP_004244667.1| - 3.3e-71 238.7 0.0 4.8e-71 238.2 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DSPc PF00782.15 gi|325968476|ref|YP_004244668.1| - 6.6e-20 71.0 0.0 7.5e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PTPlike_phytase PF14566.1 gi|325968476|ref|YP_004244668.1| - 3.8e-07 30.2 0.0 5.3e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase PF00102.22 gi|325968476|ref|YP_004244668.1| - 3.8e-06 26.4 0.0 5.2e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.7 gi|325968476|ref|YP_004244668.1| - 0.00062 19.2 0.0 0.00078 18.9 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) DUF442 PF04273.8 gi|325968476|ref|YP_004244668.1| - 0.033 14.0 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) Hpr_kinase_C PF07475.7 gi|325968476|ref|YP_004244668.1| - 0.16 11.2 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain Sugar_tr PF00083.19 gi|325968477|ref|YP_004244669.1| - 3.2e-15 55.6 14.9 3.2e-15 55.6 10.4 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|325968477|ref|YP_004244669.1| - 2.6e-12 46.1 53.4 2.6e-12 46.1 37.0 1.9 1 1 0 1 1 1 1 Major Facilitator Superfamily RIO1 PF01163.17 gi|325968478|ref|YP_004244670.1| - 1.3e-45 155.0 0.0 2e-45 154.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|325968478|ref|YP_004244670.1| - 1.4e-22 79.5 0.1 3.3e-22 78.3 0.1 1.7 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|325968478|ref|YP_004244670.1| - 7.7e-09 35.6 0.8 0.0015 18.2 0.3 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|325968478|ref|YP_004244670.1| - 0.00034 19.8 0.0 0.00052 19.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|325968478|ref|YP_004244670.1| - 0.0038 16.2 0.1 0.096 11.7 0.1 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family WaaY PF06176.6 gi|325968478|ref|YP_004244670.1| - 0.0057 15.9 0.1 0.047 12.9 0.0 2.0 2 0 0 2 2 2 1 Lipopolysaccharide core biosynthesis protein (WaaY) HrcA_DNA-bdg PF03444.10 gi|325968478|ref|YP_004244670.1| - 0.063 12.7 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|325968478|ref|YP_004244670.1| - 0.074 13.1 0.0 0.23 11.5 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator DUF460 PF04312.8 gi|325968479|ref|YP_004244671.1| - 2.5e-42 143.6 1.4 2.5e-42 143.6 0.9 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) DUF1664 PF07889.7 gi|325968479|ref|YP_004244671.1| - 0.0022 17.7 2.0 0.76 9.5 0.0 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF1664) FtsQ PF03799.10 gi|325968479|ref|YP_004244671.1| - 0.0093 16.1 0.3 7.3 6.8 0.0 2.9 3 0 0 3 3 3 1 Cell division protein FtsQ TMF_DNA_bd PF12329.3 gi|325968479|ref|YP_004244671.1| - 0.0098 15.6 3.5 3.1 7.6 0.1 3.4 2 1 1 3 3 3 2 TATA element modulatory factor 1 DNA binding AAA_13 PF13166.1 gi|325968479|ref|YP_004244671.1| - 0.017 13.6 4.7 0.025 13.0 3.3 1.1 1 0 0 1 1 1 0 AAA domain Tropomyosin_1 PF12718.2 gi|325968479|ref|YP_004244671.1| - 0.028 14.2 4.2 0.029 14.2 1.5 1.9 1 1 1 2 2 2 0 Tropomyosin like HAUS-augmin3 PF14932.1 gi|325968479|ref|YP_004244671.1| - 0.055 12.6 0.7 0.096 11.8 0.5 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 Prefoldin PF02996.12 gi|325968479|ref|YP_004244671.1| - 0.094 12.3 4.3 4.8 6.8 0.2 2.7 1 1 1 2 2 2 0 Prefoldin subunit FliD_C PF07195.7 gi|325968479|ref|YP_004244671.1| - 0.1 11.8 0.1 0.2 10.9 0.1 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Phage_Mu_Gam PF07352.7 gi|325968479|ref|YP_004244671.1| - 0.14 11.6 3.7 12 5.3 0.0 3.0 2 1 1 3 3 3 0 Bacteriophage Mu Gam like protein Pox_A_type_inc PF04508.7 gi|325968479|ref|YP_004244671.1| - 0.32 10.8 6.4 1.8 8.5 0.3 3.5 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat Sipho_Gp157 PF05565.6 gi|325968479|ref|YP_004244671.1| - 0.53 9.8 10.6 0.43 10.1 0.1 3.2 1 1 1 3 3 3 0 Siphovirus Gp157 Prefoldin_3 PF13758.1 gi|325968479|ref|YP_004244671.1| - 0.83 9.4 10.4 0.49 10.1 4.4 2.7 2 1 1 3 3 3 0 Prefoldin subunit Prefoldin_2 PF01920.15 gi|325968479|ref|YP_004244671.1| - 1.1 9.0 8.0 7.8 6.3 0.1 3.4 3 1 1 4 4 4 0 Prefoldin subunit DUF4200 PF13863.1 gi|325968479|ref|YP_004244671.1| - 1.4 8.9 9.4 13 5.8 3.1 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) IncA PF04156.9 gi|325968479|ref|YP_004244671.1| - 6.9 6.2 6.5 24 4.4 4.5 1.8 1 1 0 1 1 1 0 IncA protein AdoMet_Synthase PF01941.14 gi|325968480|ref|YP_004244672.1| - 3.9e-173 575.4 4.3 4.5e-173 575.2 3.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.17 gi|325968481|ref|YP_004244673.1| - 5e-17 61.2 3.5 5.7e-17 61.0 2.5 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|325968481|ref|YP_004244673.1| - 2.6e-05 24.0 0.1 3.2e-05 23.7 0.1 1.3 1 1 0 1 1 1 1 Ataxin 2 SM domain Herpes_MCP PF03122.9 gi|325968481|ref|YP_004244673.1| - 0.03 11.6 0.1 0.033 11.5 0.0 1.0 1 0 0 1 1 1 0 Herpes virus major capsid protein DUF2642 PF10842.3 gi|325968481|ref|YP_004244673.1| - 0.035 13.5 0.4 0.24 10.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2642) RNA_pol_N PF01194.12 gi|325968482|ref|YP_004244674.1| - 1.8e-28 98.3 0.3 2e-28 98.1 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|325968482|ref|YP_004244674.1| - 0.00062 19.8 0.0 0.00082 19.4 0.0 1.2 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.14 gi|325968483|ref|YP_004244675.1| - 5.1e-33 113.8 0.1 6.2e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|325968484|ref|YP_004244676.1| - 1.3e-26 93.1 0.1 1.9e-26 92.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|325968485|ref|YP_004244677.1| - 8.8e-11 42.2 0.1 1.1e-10 42.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|325968486|ref|YP_004244678.1| - 8.8e-27 93.4 0.0 2.1e-26 92.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|325968486|ref|YP_004244678.1| - 1.4e-10 40.1 0.0 1.8e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_10 PF13237.1 gi|325968486|ref|YP_004244678.1| - 0.2 11.4 5.5 0.39 10.5 3.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968486|ref|YP_004244678.1| - 0.69 10.3 3.9 1.6 9.2 2.7 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF3311 PF11755.3 gi|325968488|ref|YP_004244680.1| - 3.2e-13 48.9 11.4 3.5e-13 48.8 7.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4212 PF13937.1 gi|325968488|ref|YP_004244680.1| - 0.23 11.5 3.6 0.29 11.1 2.5 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4212) DUF2269 PF10027.4 gi|325968488|ref|YP_004244680.1| - 0.39 10.4 3.5 0.39 10.4 2.5 1.2 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2269) ATP1G1_PLM_MAT8 PF02038.11 gi|325968488|ref|YP_004244680.1| - 0.43 9.6 4.3 0.75 8.8 3.0 1.5 1 1 0 1 1 1 0 ATP1G1/PLM/MAT8 family DUF3185 PF11381.3 gi|325968488|ref|YP_004244680.1| - 1.4 8.7 3.9 0.24 11.2 0.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) Metallophos_2 PF12850.2 gi|325968489|ref|YP_004244681.1| - 3.9e-25 88.5 0.0 4.5e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|325968489|ref|YP_004244681.1| - 6.7e-17 61.4 0.1 1.7e-12 47.0 0.0 2.6 2 1 1 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|325968489|ref|YP_004244681.1| - 3.6e-10 39.5 4.1 1e-05 25.0 0.8 2.3 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase adh_short_C2 PF13561.1 gi|325968492|ref|YP_004244684.1| - 5.1e-35 121.3 0.0 5.8e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|325968492|ref|YP_004244684.1| - 2.2e-22 79.7 0.1 3.1e-22 79.2 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|325968492|ref|YP_004244684.1| - 1.7e-11 44.0 0.3 3e-11 43.3 0.0 1.5 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.1 gi|325968492|ref|YP_004244684.1| - 0.00059 19.8 0.5 0.0016 18.4 0.1 1.8 2 0 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|325968492|ref|YP_004244684.1| - 0.003 17.2 0.1 0.0055 16.3 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2621 PF11084.3 gi|325968492|ref|YP_004244684.1| - 0.08 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2621) PAC2 PF09754.4 gi|325968493|ref|YP_004244685.1| - 8.8e-45 153.2 0.1 1.1e-44 152.9 0.1 1.0 1 0 0 1 1 1 1 PAC2 family VHS PF00790.14 gi|325968494|ref|YP_004244686.1| - 0.0021 17.6 1.0 0.74 9.4 0.1 2.7 2 0 0 2 2 2 2 VHS domain Hemerythrin PF01814.18 gi|325968494|ref|YP_004244686.1| - 0.04 14.0 0.2 0.1 12.7 0.1 1.6 1 0 0 1 1 1 0 Hemerythrin HHE cation binding domain Alpha-L-AF_C PF06964.7 gi|325968494|ref|YP_004244686.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Alpha-L-arabinofuranosidase C-terminus Ald_Xan_dh_C2 PF02738.13 gi|325968495|ref|YP_004244687.1| - 1.4e-106 357.0 0.0 1.8e-106 356.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|325968495|ref|YP_004244687.1| - 5.6e-19 68.2 0.0 9.5e-19 67.5 0.0 1.4 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Hexapep PF00132.19 gi|325968496|ref|YP_004244688.1| - 9.6e-22 75.4 32.1 9.7e-10 37.5 2.2 5.0 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|325968496|ref|YP_004244688.1| - 4.4e-09 35.7 35.2 9.5e-05 21.8 1.6 4.8 4 2 2 6 6 6 4 Hexapeptide repeat of succinyl-transferase Glycos_transf_1 PF00534.15 gi|325968497|ref|YP_004244689.1| - 8.7e-21 74.0 0.0 3e-20 72.3 0.0 1.8 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968497|ref|YP_004244689.1| - 1.7e-13 50.8 0.0 3.4e-13 49.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968497|ref|YP_004244689.1| - 7.5e-06 26.1 0.0 1.4e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325968497|ref|YP_004244689.1| - 0.00012 21.8 0.0 0.0016 18.2 0.0 2.6 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glycogen_syn PF05693.8 gi|325968497|ref|YP_004244689.1| - 0.033 12.4 0.1 0.055 11.7 0.1 1.3 1 0 0 1 1 1 0 Glycogen synthase PGM_PMM_I PF02878.11 gi|325968498|ref|YP_004244690.1| - 8e-34 116.0 0.0 1.9e-33 114.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|325968498|ref|YP_004244690.1| - 7.4e-21 74.3 0.2 1.7e-20 73.1 0.0 1.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|325968498|ref|YP_004244690.1| - 3.2e-20 72.3 0.0 9.5e-20 70.8 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|325968498|ref|YP_004244690.1| - 2.5e-10 40.2 0.0 5.8e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Peptidase_M42 PF05343.9 gi|325968499|ref|YP_004244691.1| - 5.3e-102 340.5 0.1 6.2e-102 340.2 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|325968499|ref|YP_004244691.1| - 2.6e-12 46.6 0.2 4.7e-12 45.8 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|325968499|ref|YP_004244691.1| - 7.6e-07 29.0 0.0 2.3e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|325968499|ref|YP_004244691.1| - 0.0014 17.1 0.0 0.0074 14.8 0.0 1.9 1 1 1 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) AIRC PF00731.15 gi|325968499|ref|YP_004244691.1| - 0.12 11.6 0.0 0.28 10.4 0.0 1.7 1 0 0 1 1 1 0 AIR carboxylase Xan_ur_permease PF00860.15 gi|325968500|ref|YP_004244692.1| - 5.9e-25 87.5 52.8 5.9e-25 87.5 36.6 2.6 1 1 1 2 2 2 1 Permease family Peptidase_M1 PF01433.15 gi|325968501|ref|YP_004244693.1| - 6e-101 338.3 0.0 9.5e-101 337.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 Peptidase_MA_2 PF13485.1 gi|325968501|ref|YP_004244693.1| - 1e-20 74.0 1.2 2e-20 73.1 0.8 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily ERAP1_C PF11838.3 gi|325968501|ref|YP_004244693.1| - 4.6e-19 68.8 0.0 8.5e-19 67.9 0.0 1.5 1 1 0 1 1 1 1 ERAP1-like C-terminal domain GPAT_N PF14829.1 gi|325968501|ref|YP_004244693.1| - 0.0074 15.9 0.0 0.023 14.3 0.0 1.8 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase N-terminal SPOR PF05036.8 gi|325968502|ref|YP_004244694.1| - 0.14 12.2 0.0 0.46 10.6 0.0 1.9 1 0 0 1 1 1 0 Sporulation related domain ATP-synt_C PF00137.16 gi|325968503|ref|YP_004244695.1| - 6.7e-17 61.1 18.0 6.7e-17 61.1 12.4 1.8 2 0 0 2 2 2 1 ATP synthase subunit C MtrD PF04207.7 gi|325968503|ref|YP_004244695.1| - 0.094 12.0 8.0 0.1 11.9 5.6 1.0 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit D CbiM PF01891.11 gi|325968503|ref|YP_004244695.1| - 0.59 9.6 12.8 0.69 9.4 8.8 1.0 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region UPF0233 PF06781.7 gi|325968503|ref|YP_004244695.1| - 0.84 9.2 4.1 0.27 10.8 0.2 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0233) KaiC PF06745.8 gi|325968504|ref|YP_004244696.1| - 1.2e-16 60.5 0.0 1.8e-16 59.9 0.0 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|325968504|ref|YP_004244696.1| - 5.2e-05 22.7 0.0 8.3e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|325968504|ref|YP_004244696.1| - 0.00036 18.9 0.1 0.00084 17.7 0.0 1.5 1 1 0 2 2 2 1 GvpD gas vesicle protein Pox_VLTF3 PF04947.9 gi|325968504|ref|YP_004244696.1| - 0.0016 17.9 0.3 0.0025 17.3 0.1 1.6 1 1 0 1 1 1 1 Poxvirus Late Transcription Factor VLTF3 like DUF835 PF05763.7 gi|325968504|ref|YP_004244696.1| - 0.0066 15.9 0.2 3.7 7.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF835) ATP-cone PF03477.11 gi|325968504|ref|YP_004244696.1| - 0.025 14.9 0.1 26 5.3 0.0 3.1 3 0 0 3 3 3 0 ATP cone domain CSTF2_hinge PF14327.1 gi|325968504|ref|YP_004244696.1| - 0.031 14.3 0.2 0.23 11.5 0.0 2.3 1 1 1 2 2 2 0 Hinge domain of cleavage stimulation factor subunit 2 AAA_14 PF13173.1 gi|325968504|ref|YP_004244696.1| - 0.032 14.1 0.0 0.056 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|325968504|ref|YP_004244696.1| - 0.046 13.9 0.0 0.22 11.7 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|325968504|ref|YP_004244696.1| - 0.048 13.8 0.0 0.093 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_35 PF14516.1 gi|325968504|ref|YP_004244696.1| - 0.056 12.0 0.0 0.15 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain HAD PF12710.2 gi|325968508|ref|YP_004244700.1| - 0.01 16.0 0.2 0.056 13.6 0.1 2.2 2 2 0 2 2 2 0 haloacid dehalogenase-like hydrolase LAGLIDADG_WhiA PF14527.1 gi|325968508|ref|YP_004244700.1| - 0.06 13.2 2.0 11 5.9 0.1 3.2 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain LAGLIDADG_3 PF14528.1 gi|325968508|ref|YP_004244700.1| - 0.11 12.7 3.4 1.1 9.5 0.1 3.6 3 1 1 4 4 4 0 LAGLIDADG-like domain WEMBL PF05701.6 gi|325968509|ref|YP_004244701.1| - 0.049 12.1 0.1 0.063 11.7 0.0 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light DEAD PF00270.24 gi|325968510|ref|YP_004244702.1| - 0.00021 20.8 0.1 0.096 12.1 0.0 3.2 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|325968510|ref|YP_004244702.1| - 0.00036 20.3 0.0 0.19 11.5 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|325968510|ref|YP_004244702.1| - 0.0092 16.1 0.0 1 9.5 0.0 2.9 3 0 0 3 3 3 1 AAA domain DEAD_2 PF06733.10 gi|325968510|ref|YP_004244702.1| - 0.069 12.5 0.0 0.17 11.2 0.0 1.7 1 0 0 1 1 1 0 DEAD_2 DUF4455 PF14643.1 gi|325968511|ref|YP_004244703.1| - 0.019 13.6 0.5 0.075 11.6 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) DUF1451 PF07295.6 gi|325968511|ref|YP_004244703.1| - 0.27 11.0 2.9 0.72 9.6 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) Erythro-docking PF09277.6 gi|325968511|ref|YP_004244703.1| - 0.31 10.7 5.1 0.24 11.0 0.4 2.5 2 0 0 2 2 2 0 Erythronolide synthase, docking FliL PF03748.9 gi|325968511|ref|YP_004244703.1| - 0.36 10.8 2.8 2.1 8.3 1.8 2.4 1 1 0 1 1 1 0 Flagellar basal body-associated protein FliL AAA_10 PF12846.2 gi|325968514|ref|YP_004244706.1| - 2.2e-14 53.6 0.0 6.7e-14 52.0 0.0 1.7 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|325968514|ref|YP_004244706.1| - 5.8e-06 26.2 0.0 1.4e-05 25.0 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|325968514|ref|YP_004244706.1| - 1.9e-05 23.5 0.0 0.00013 20.7 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|325968514|ref|YP_004244706.1| - 0.00021 21.4 0.0 0.072 13.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain DUF853 PF05872.7 gi|325968514|ref|YP_004244706.1| - 0.011 14.1 0.3 0.84 7.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Arch_ATPase PF01637.13 gi|325968514|ref|YP_004244706.1| - 0.018 14.7 0.0 0.28 10.8 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase AAA PF00004.24 gi|325968514|ref|YP_004244706.1| - 0.024 14.8 0.1 0.4 10.8 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|325968514|ref|YP_004244706.1| - 0.025 14.5 0.0 0.2 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|325968514|ref|YP_004244706.1| - 0.041 13.3 0.0 0.26 10.7 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family cobW PF02492.14 gi|325968514|ref|YP_004244706.1| - 0.064 12.6 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zot PF05707.7 gi|325968514|ref|YP_004244706.1| - 0.14 11.6 0.1 0.39 10.1 0.0 1.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_33 PF13671.1 gi|325968514|ref|YP_004244706.1| - 0.15 11.9 0.0 0.69 9.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|325968514|ref|YP_004244706.1| - 0.16 11.5 0.1 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.15 gi|325968514|ref|YP_004244706.1| - 0.17 10.3 0.1 0.25 9.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase HAD_2 PF13419.1 gi|325968515|ref|YP_004244707.1| - 0.048 13.8 0.0 0.19 11.9 0.0 1.9 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase CorA PF01544.13 gi|325968516|ref|YP_004244708.1| - 0.054 12.5 0.0 0.14 11.2 0.0 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF3759 PF12585.3 gi|325968516|ref|YP_004244708.1| - 0.071 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3759) LexA_DNA_bind PF01726.11 gi|325968516|ref|YP_004244708.1| - 0.072 12.6 0.1 0.36 10.4 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain DUF3292 PF11696.3 gi|325968516|ref|YP_004244708.1| - 8.1 4.1 6.9 3.5 5.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3292) YqhG PF11079.3 gi|325968517|ref|YP_004244709.1| - 0.036 12.8 0.1 0.069 11.9 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function AAA_10 PF12846.2 gi|325968518|ref|YP_004244710.1| - 2.2e-19 70.0 0.0 4.6e-10 39.4 0.0 2.3 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|325968518|ref|YP_004244710.1| - 1.6e-13 51.0 0.0 3e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|325968518|ref|YP_004244710.1| - 2.3e-08 33.0 0.0 2.1e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|325968518|ref|YP_004244710.1| - 2.2e-07 30.5 0.0 4.7e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|325968518|ref|YP_004244710.1| - 1.5e-05 25.1 0.0 0.0098 16.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain DUF853 PF05872.7 gi|325968518|ref|YP_004244710.1| - 0.0007 18.0 0.0 0.053 11.8 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) DEAD PF00270.24 gi|325968518|ref|YP_004244710.1| - 0.00071 19.1 0.1 0.13 11.7 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|325968518|ref|YP_004244710.1| - 0.00095 19.0 0.0 0.002 18.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|325968518|ref|YP_004244710.1| - 0.019 14.4 0.0 0.13 11.6 0.0 2.3 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|325968518|ref|YP_004244710.1| - 0.032 14.2 0.0 0.24 11.3 0.0 2.4 3 0 0 3 3 3 0 AAA ATPase domain MobB PF03205.9 gi|325968518|ref|YP_004244710.1| - 0.057 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|325968518|ref|YP_004244710.1| - 0.061 12.7 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|325968518|ref|YP_004244710.1| - 0.12 11.7 0.0 0.32 10.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|325968518|ref|YP_004244710.1| - 0.23 10.9 0.0 0.59 9.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain CbiA PF01656.18 gi|325968522|ref|YP_004244714.1| - 2.3e-10 40.1 0.0 4.1e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|325968522|ref|YP_004244714.1| - 3.2e-06 27.1 0.2 7.8e-06 25.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|325968522|ref|YP_004244714.1| - 2.7e-05 23.6 0.0 4.9e-05 22.8 0.0 1.3 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|325968522|ref|YP_004244714.1| - 0.0012 17.9 0.4 0.0028 16.7 0.3 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|325968522|ref|YP_004244714.1| - 0.0036 16.4 0.0 0.012 14.7 0.0 1.7 2 0 0 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|325968522|ref|YP_004244714.1| - 0.029 13.7 0.0 0.04 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|325968522|ref|YP_004244714.1| - 0.05 12.7 0.0 0.081 12.0 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family RNA_helicase PF00910.17 gi|325968522|ref|YP_004244714.1| - 0.11 12.6 0.1 0.32 11.1 0.0 1.8 1 0 0 1 1 1 0 RNA helicase T2SE PF00437.15 gi|325968523|ref|YP_004244715.1| - 3.4e-23 81.9 0.1 5.5e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|325968523|ref|YP_004244715.1| - 0.00093 19.5 0.0 0.0017 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325968523|ref|YP_004244715.1| - 0.0012 18.3 0.0 0.0026 17.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|325968523|ref|YP_004244715.1| - 0.0036 16.5 0.0 0.0062 15.7 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|325968523|ref|YP_004244715.1| - 0.0076 15.9 0.2 0.022 14.4 0.1 1.9 1 1 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|325968523|ref|YP_004244715.1| - 0.015 15.6 0.0 0.032 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|325968523|ref|YP_004244715.1| - 0.016 15.4 0.0 0.032 14.4 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|325968523|ref|YP_004244715.1| - 0.016 14.3 0.0 0.03 13.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|325968523|ref|YP_004244715.1| - 0.016 14.6 0.0 0.045 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|325968523|ref|YP_004244715.1| - 0.044 13.6 0.0 0.18 11.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|325968523|ref|YP_004244715.1| - 0.044 13.1 0.1 0.11 11.9 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|325968523|ref|YP_004244715.1| - 0.055 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|325968523|ref|YP_004244715.1| - 0.061 14.1 0.2 0.18 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|325968523|ref|YP_004244715.1| - 0.091 12.4 0.0 0.32 10.6 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activ_2 PF14532.1 gi|325968523|ref|YP_004244715.1| - 0.092 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|325968523|ref|YP_004244715.1| - 0.12 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|325968523|ref|YP_004244715.1| - 0.14 11.8 0.0 0.42 10.2 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase SRPRB PF09439.5 gi|325968523|ref|YP_004244715.1| - 0.15 11.2 0.0 0.34 10.0 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF4006 PF13179.1 gi|325968527|ref|YP_004244719.1| - 0.27 10.7 1.1 0.46 10.0 0.8 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF4006) ATP_synt_I PF03899.10 gi|325968528|ref|YP_004244720.1| - 0.077 13.1 2.6 0.15 12.2 1.7 1.5 1 1 0 1 1 1 0 ATP synthase I chain Peptidase_M50 PF02163.17 gi|325968528|ref|YP_004244720.1| - 3.2 6.6 5.4 12 4.8 3.8 1.7 1 1 0 1 1 1 0 Peptidase family M50 OppC_N PF12911.2 gi|325968529|ref|YP_004244721.1| - 0.048 13.0 0.7 0.048 13.0 0.5 2.5 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C P3A PF08727.6 gi|325968530|ref|YP_004244722.1| - 0.094 12.0 0.1 0.86 8.9 0.0 2.4 2 0 0 2 2 2 0 Poliovirus 3A protein like Rad51 PF08423.6 gi|325968532|ref|YP_004244724.1| - 1.1e-34 119.5 0.0 1.4e-34 119.1 0.0 1.1 1 0 0 1 1 1 1 Rad51 KaiC PF06745.8 gi|325968532|ref|YP_004244724.1| - 9.8e-20 70.6 0.0 1.3e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 KaiC RecA PF00154.16 gi|325968532|ref|YP_004244724.1| - 4.9e-09 35.6 0.0 6.6e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|325968532|ref|YP_004244724.1| - 1.6e-08 34.1 0.0 2.7e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|325968532|ref|YP_004244724.1| - 0.0014 18.8 0.0 0.0033 17.6 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SAM_2 PF07647.12 gi|325968532|ref|YP_004244724.1| - 0.036 13.9 0.2 0.13 12.0 0.0 2.0 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) PhoH PF02562.11 gi|325968532|ref|YP_004244724.1| - 0.043 13.0 0.3 0.11 11.7 0.2 1.7 1 1 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.1 gi|325968532|ref|YP_004244724.1| - 0.14 11.7 0.5 0.4 10.2 0.3 1.8 1 1 0 1 1 1 0 AAA domain GLTT PF01744.15 gi|325968534|ref|YP_004244726.1| - 0.17 11.2 3.0 0.23 10.9 1.0 2.0 2 0 0 2 2 2 0 GLTT repeat (6 copies) RHH_1 PF01402.16 gi|325968535|ref|YP_004244727.1| - 3.7e-08 32.9 0.4 1.2e-07 31.2 0.2 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF217 PF02697.9 gi|325968535|ref|YP_004244727.1| - 0.00021 21.4 0.2 0.00028 21.0 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_4 PF13467.1 gi|325968535|ref|YP_004244727.1| - 0.0026 17.5 0.2 0.43 10.4 0.0 2.2 2 0 0 2 2 2 2 Ribbon-helix-helix domain ANTAR PF03861.9 gi|325968535|ref|YP_004244727.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 ANTAR domain PSK_trans_fac PF07704.6 gi|325968535|ref|YP_004244727.1| - 0.098 13.3 0.0 0.13 12.9 0.0 1.2 1 0 0 1 1 1 0 Rv0623-like transcription factor RSS_P20 PF11757.3 gi|325968535|ref|YP_004244727.1| - 0.17 12.0 0.7 0.54 10.3 0.1 1.9 1 1 1 2 2 2 0 Suppressor of RNA silencing P21-like SWIM PF04434.12 gi|325968536|ref|YP_004244728.1| - 0.0066 15.9 0.3 0.018 14.4 0.2 1.8 1 1 0 1 1 1 1 SWIM zinc finger DUF3644 PF12358.3 gi|325968536|ref|YP_004244728.1| - 0.036 14.3 0.0 0.055 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3644) DUF1049 PF06305.6 gi|325968540|ref|YP_004244732.1| - 9.1 5.8 7.1 3.3 7.2 0.9 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Med2 PF11214.3 gi|325968541|ref|YP_004244733.1| - 0.056 13.4 0.1 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Mediator complex subunit 2 AIM24 PF01987.12 gi|325968543|ref|YP_004244735.1| - 3.9e-48 163.7 0.3 4.4e-48 163.5 0.2 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Thermopsin PF05317.6 gi|325968544|ref|YP_004244736.1| - 9.3e-38 129.6 4.9 1.7e-36 125.5 3.4 2.1 1 1 0 1 1 1 1 Thermopsin XPC-binding PF09280.6 gi|325968545|ref|YP_004244737.1| - 0.02 14.3 0.1 0.02 14.3 0.1 1.6 2 0 0 2 2 2 0 XPC-binding domain TENA_THI-4 PF03070.11 gi|325968547|ref|YP_004244739.1| - 2.2e-20 73.3 0.0 2.7e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Methyltransf_2 PF00891.13 gi|325968547|ref|YP_004244739.1| - 0.036 13.2 0.0 0.053 12.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Med31 PF05669.7 gi|325968547|ref|YP_004244739.1| - 0.072 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 SOH1 NTP_transf_5 PF14907.1 gi|325968548|ref|YP_004244740.1| - 1.4e-05 24.5 0.1 2.2e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase PTRF_SDPR PF15237.1 gi|325968549|ref|YP_004244741.1| - 4.9e-05 22.8 7.6 0.00026 20.5 2.3 1.7 1 1 2 3 3 3 3 PTRF/SDPR family APG6 PF04111.7 gi|325968549|ref|YP_004244741.1| - 7.3e-05 21.9 13.3 0.00012 21.2 8.8 1.7 1 1 0 1 1 1 1 Autophagy protein Apg6 DUF972 PF06156.8 gi|325968549|ref|YP_004244741.1| - 0.00011 22.5 13.7 0.0013 19.0 1.1 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF972) DUF948 PF06103.6 gi|325968549|ref|YP_004244741.1| - 0.00015 21.5 3.2 0.34 10.7 0.0 2.7 3 0 0 3 3 2 2 Bacterial protein of unknown function (DUF948) Laminin_I PF06008.9 gi|325968549|ref|YP_004244741.1| - 0.00026 20.4 8.2 0.00042 19.7 5.7 1.4 1 0 0 1 1 1 1 Laminin Domain I AAA_13 PF13166.1 gi|325968549|ref|YP_004244741.1| - 0.0035 15.9 4.6 0.0043 15.6 3.2 1.1 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.6 gi|325968549|ref|YP_004244741.1| - 0.004 15.8 10.2 0.0058 15.3 7.1 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein zf-C4H2 PF10146.4 gi|325968549|ref|YP_004244741.1| - 0.007 16.4 4.2 0.0094 15.9 2.9 1.2 1 0 0 1 1 1 1 Zinc finger-containing protein Hemerythrin PF01814.18 gi|325968549|ref|YP_004244741.1| - 0.0072 16.4 2.2 0.45 10.6 1.5 2.6 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain AAA_15 PF13175.1 gi|325968549|ref|YP_004244741.1| - 0.0073 15.4 4.4 0.011 14.8 2.8 1.3 1 1 0 1 1 1 1 AAA ATPase domain ERM PF00769.14 gi|325968549|ref|YP_004244741.1| - 0.016 14.7 9.5 0.022 14.2 6.6 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family CCDC155 PF14662.1 gi|325968549|ref|YP_004244741.1| - 0.023 14.2 12.2 0.075 12.6 8.3 1.7 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 DUF2312 PF10073.4 gi|325968549|ref|YP_004244741.1| - 0.029 13.7 9.1 0.91 8.9 1.4 3.8 2 2 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) Dor1 PF04124.7 gi|325968549|ref|YP_004244741.1| - 0.03 12.7 2.9 0.15 10.4 1.8 2.2 2 1 0 2 2 2 0 Dor1-like family Cast PF10174.4 gi|325968549|ref|YP_004244741.1| - 0.032 12.2 10.2 0.049 11.6 7.1 1.3 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone EzrA PF06160.7 gi|325968549|ref|YP_004244741.1| - 0.041 12.0 8.6 0.19 9.9 6.5 1.7 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA TarH PF02203.10 gi|325968549|ref|YP_004244741.1| - 0.068 13.0 2.4 0.53 10.0 0.3 2.1 2 0 0 2 2 2 0 Tar ligand binding domain homologue Sec34 PF04136.10 gi|325968549|ref|YP_004244741.1| - 0.071 12.8 4.1 0.19 11.3 1.1 2.1 1 1 1 2 2 2 0 Sec34-like family V_ATPase_I PF01496.14 gi|325968549|ref|YP_004244741.1| - 0.072 10.9 3.7 0.092 10.5 2.6 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF3450 PF11932.3 gi|325968549|ref|YP_004244741.1| - 0.076 12.2 6.6 0.087 12.0 3.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Herpes_U30 PF04523.8 gi|325968549|ref|YP_004244741.1| - 0.088 10.2 0.6 0.13 9.6 0.4 1.3 1 1 0 1 1 1 0 Herpes virus tegument protein U30 RmuC PF02646.11 gi|325968549|ref|YP_004244741.1| - 0.09 11.5 7.4 1.5 7.6 0.3 2.4 1 1 0 2 2 2 0 RmuC family BLOC1_2 PF10046.4 gi|325968549|ref|YP_004244741.1| - 0.1 12.7 7.3 8.9 6.5 0.5 3.1 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 UPF0449 PF15136.1 gi|325968549|ref|YP_004244741.1| - 0.17 12.1 6.6 3.1 8.0 1.0 2.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 Mod_r PF07200.8 gi|325968549|ref|YP_004244741.1| - 0.25 11.2 8.6 3.9 7.3 5.8 2.3 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein FlgN PF05130.7 gi|325968549|ref|YP_004244741.1| - 0.28 11.4 10.4 0.56 10.4 7.2 1.5 1 0 0 1 1 1 0 FlgN protein TBPIP PF07106.8 gi|325968549|ref|YP_004244741.1| - 0.31 10.5 12.4 0.67 9.4 8.3 1.8 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1664 PF07889.7 gi|325968549|ref|YP_004244741.1| - 0.31 10.8 5.9 0.85 9.4 1.6 2.6 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) DinB PF05163.7 gi|325968549|ref|YP_004244741.1| - 0.31 10.7 6.3 0.31 10.7 0.2 2.2 1 1 1 2 2 2 0 DinB family DUF342 PF03961.8 gi|325968549|ref|YP_004244741.1| - 0.32 9.3 8.2 0.7 8.2 5.4 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Cauli_AT PF03233.8 gi|325968549|ref|YP_004244741.1| - 0.35 10.5 3.4 6.8 6.3 2.2 2.4 2 1 0 2 2 1 0 Aphid transmission protein Allexi_40kDa PF05549.6 gi|325968549|ref|YP_004244741.1| - 0.4 9.9 3.7 1.4 8.1 0.1 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein COG2 PF06148.6 gi|325968549|ref|YP_004244741.1| - 0.47 10.3 7.4 19 5.1 0.3 3.2 2 1 1 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 MitMem_reg PF13012.1 gi|325968549|ref|YP_004244741.1| - 0.5 10.4 4.0 0.59 10.2 0.3 2.2 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function LOH1CR12 PF10158.4 gi|325968549|ref|YP_004244741.1| - 0.56 9.9 4.3 3.2 7.5 0.5 2.6 1 1 1 2 2 2 0 Tumour suppressor protein GlnE PF03710.10 gi|325968549|ref|YP_004244741.1| - 0.79 8.9 5.9 7 5.8 0.0 2.6 1 1 2 3 3 3 0 Glutamate-ammonia ligase adenylyltransferase HALZ PF02183.13 gi|325968549|ref|YP_004244741.1| - 0.82 9.4 4.3 16 5.2 0.4 3.4 3 2 0 3 3 3 0 Homeobox associated leucine zipper HAUS6_N PF14661.1 gi|325968549|ref|YP_004244741.1| - 0.83 8.9 7.8 1.3 8.3 5.4 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Nnf1 PF03980.9 gi|325968549|ref|YP_004244741.1| - 0.9 9.5 9.2 4 7.4 1.8 2.7 2 1 0 2 2 2 0 Nnf1 Snapin_Pallidin PF14712.1 gi|325968549|ref|YP_004244741.1| - 0.91 9.8 7.6 1.2 9.5 2.6 2.8 2 1 2 4 4 3 0 Snapin/Pallidin Seryl_tRNA_N PF02403.17 gi|325968549|ref|YP_004244741.1| - 1.3 9.0 11.5 0.73 9.8 5.2 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.7 gi|325968549|ref|YP_004244741.1| - 1.3 8.7 8.3 2.4 7.9 0.3 2.2 1 1 2 3 3 3 0 Laminin Domain II DUF1759 PF03564.10 gi|325968549|ref|YP_004244741.1| - 1.4 8.7 7.8 2.6 7.8 0.4 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1759) RasGAP PF00616.14 gi|325968549|ref|YP_004244741.1| - 1.7 8.2 6.1 3.6 7.1 4.2 1.6 1 1 0 1 1 1 0 GTPase-activator protein for Ras-like GTPase ADIP PF11559.3 gi|325968549|ref|YP_004244741.1| - 1.7 8.5 12.1 4.5 7.1 7.9 1.9 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF1640 PF07798.6 gi|325968549|ref|YP_004244741.1| - 2 8.4 7.3 6.7 6.7 0.6 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF1640) Prominin PF05478.6 gi|325968549|ref|YP_004244741.1| - 2.4 5.5 7.9 1.8 5.9 0.4 2.0 1 1 1 2 2 2 0 Prominin DUF4363 PF14276.1 gi|325968549|ref|YP_004244741.1| - 3.5 7.3 9.6 0.69 9.6 1.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) DUF3461 PF11944.3 gi|325968549|ref|YP_004244741.1| - 3.6 7.4 8.2 11 5.8 0.8 2.9 2 1 2 4 4 3 0 Protein of unknown function (DUF3461) Syntaxin PF00804.20 gi|325968549|ref|YP_004244741.1| - 5.1 7.3 8.0 1.5e+02 2.6 5.6 2.7 2 1 0 2 2 1 0 Syntaxin DivIC PF04977.10 gi|325968549|ref|YP_004244741.1| - 5.1 6.6 13.3 1.5 8.3 1.3 2.6 1 1 1 2 2 2 0 Septum formation initiator YbfN PF13982.1 gi|325968549|ref|YP_004244741.1| - 5.7 7.1 7.8 35 4.6 0.2 3.8 2 2 1 3 3 3 0 YbfN-like lipoprotein Rab5-bind PF09311.6 gi|325968549|ref|YP_004244741.1| - 6.4 6.6 11.3 1.9 8.3 0.5 2.3 1 1 1 2 2 2 0 Rabaptin-like protein MAP7 PF05672.6 gi|325968549|ref|YP_004244741.1| - 7.7 5.8 14.1 12 5.2 9.8 1.2 1 0 0 1 1 1 0 MAP7 (E-MAP-115) family DASH_Dad4 PF08650.5 gi|325968549|ref|YP_004244741.1| - 9.6 6.1 13.8 24 4.8 3.8 3.1 3 1 0 3 3 2 0 DASH complex subunit Dad4 AAA_17 PF13207.1 gi|325968550|ref|YP_004244742.1| - 0.00011 23.0 0.0 0.00054 20.7 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|325968550|ref|YP_004244742.1| - 0.00085 19.6 0.0 0.011 16.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|325968550|ref|YP_004244742.1| - 0.0014 18.6 0.0 0.0028 17.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|325968550|ref|YP_004244742.1| - 0.0014 18.8 0.0 0.0027 17.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|325968550|ref|YP_004244742.1| - 0.0017 18.6 0.0 0.0026 18.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_5 PF07728.9 gi|325968550|ref|YP_004244742.1| - 0.0048 16.6 0.0 0.0096 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|325968550|ref|YP_004244742.1| - 0.0051 16.2 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|325968550|ref|YP_004244742.1| - 0.0072 16.4 0.0 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|325968550|ref|YP_004244742.1| - 0.009 15.9 0.0 0.066 13.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|325968550|ref|YP_004244742.1| - 0.0097 16.0 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 1 RNA helicase DUF87 PF01935.12 gi|325968550|ref|YP_004244742.1| - 0.01 15.6 0.0 0.03 14.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 MobB PF03205.9 gi|325968550|ref|YP_004244742.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activ_2 PF14532.1 gi|325968550|ref|YP_004244742.1| - 0.022 14.8 0.0 0.053 13.5 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_21 PF13304.1 gi|325968550|ref|YP_004244742.1| - 0.022 14.7 0.1 0.056 13.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|325968550|ref|YP_004244742.1| - 0.026 14.3 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|325968550|ref|YP_004244742.1| - 0.04 13.7 0.1 0.42 10.4 0.0 2.2 2 1 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.1 gi|325968550|ref|YP_004244742.1| - 0.043 13.3 0.0 0.089 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|325968550|ref|YP_004244742.1| - 0.046 13.4 0.0 0.084 12.6 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_13 PF13166.1 gi|325968550|ref|YP_004244742.1| - 0.048 12.1 0.0 0.068 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|325968550|ref|YP_004244742.1| - 0.05 13.0 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|325968550|ref|YP_004244742.1| - 0.065 12.4 0.0 0.089 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|325968550|ref|YP_004244742.1| - 0.073 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Thymidylate_kin PF02223.12 gi|325968550|ref|YP_004244742.1| - 0.089 12.1 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase AAA_14 PF13173.1 gi|325968550|ref|YP_004244742.1| - 0.095 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|325968550|ref|YP_004244742.1| - 0.096 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|325968550|ref|YP_004244742.1| - 0.14 11.1 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF58 PF01882.13 gi|325968551|ref|YP_004244743.1| - 1.4e-07 31.5 0.0 3.1e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF4360 PF14273.1 gi|325968551|ref|YP_004244743.1| - 0.027 14.1 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4360) AAA_3 PF07726.6 gi|325968552|ref|YP_004244744.1| - 3.8e-33 113.8 0.0 7.4e-33 112.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|325968552|ref|YP_004244744.1| - 5.5e-16 58.5 0.0 1.1e-15 57.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|325968552|ref|YP_004244744.1| - 2.2e-08 34.3 0.0 4.1e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|325968552|ref|YP_004244744.1| - 3.9e-06 26.4 0.0 8.7e-06 25.3 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|325968552|ref|YP_004244744.1| - 4.3e-06 25.7 0.2 0.00012 20.9 0.2 2.3 1 1 0 1 1 1 1 MCM2/3/5 family AAA_17 PF13207.1 gi|325968552|ref|YP_004244744.1| - 1e-05 26.3 0.0 1.9e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325968552|ref|YP_004244744.1| - 2.7e-05 24.2 0.5 0.00027 20.9 0.1 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|325968552|ref|YP_004244744.1| - 9.3e-05 22.7 0.0 0.00017 21.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|325968552|ref|YP_004244744.1| - 0.00018 20.6 0.1 0.00036 19.6 0.1 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus RNA_helicase PF00910.17 gi|325968552|ref|YP_004244744.1| - 0.0002 21.4 0.0 0.00045 20.3 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_19 PF13245.1 gi|325968552|ref|YP_004244744.1| - 0.00022 20.8 0.1 0.00049 19.7 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|325968552|ref|YP_004244744.1| - 0.00036 20.6 0.2 0.0012 18.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|325968552|ref|YP_004244744.1| - 0.00039 19.6 0.1 0.072 12.2 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|325968552|ref|YP_004244744.1| - 0.00052 19.9 0.0 0.00075 19.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|325968552|ref|YP_004244744.1| - 0.00056 18.7 1.0 0.012 14.3 0.1 2.4 2 1 0 2 2 2 1 TIP49 C-terminus T2SE PF00437.15 gi|325968552|ref|YP_004244744.1| - 0.0013 17.6 0.6 0.0032 16.4 0.1 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|325968552|ref|YP_004244744.1| - 0.0014 18.9 0.0 0.002 18.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|325968552|ref|YP_004244744.1| - 0.0015 18.4 0.0 0.0034 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|325968552|ref|YP_004244744.1| - 0.0019 17.8 0.2 0.0052 16.4 0.1 1.7 2 0 0 2 2 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_PrkA PF08298.6 gi|325968552|ref|YP_004244744.1| - 0.002 16.8 0.2 0.16 10.5 0.0 2.1 2 0 0 2 2 2 1 PrkA AAA domain AAA_33 PF13671.1 gi|325968552|ref|YP_004244744.1| - 0.0027 17.5 0.0 0.0043 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|325968552|ref|YP_004244744.1| - 0.0028 17.3 0.2 0.007 16.0 0.2 1.7 1 0 0 1 1 1 1 NTPase AAA_29 PF13555.1 gi|325968552|ref|YP_004244744.1| - 0.0043 16.5 0.5 0.0092 15.4 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|325968552|ref|YP_004244744.1| - 0.005 16.8 0.0 0.0099 15.9 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain ABC_tran PF00005.22 gi|325968552|ref|YP_004244744.1| - 0.0061 16.8 0.2 0.072 13.3 0.1 2.1 2 0 0 2 2 2 1 ABC transporter NACHT PF05729.7 gi|325968552|ref|YP_004244744.1| - 0.0069 16.0 0.1 0.018 14.7 0.1 1.6 1 0 0 1 1 1 1 NACHT domain MobB PF03205.9 gi|325968552|ref|YP_004244744.1| - 0.011 15.4 0.1 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|325968552|ref|YP_004244744.1| - 0.011 15.1 0.0 0.036 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|325968552|ref|YP_004244744.1| - 0.039 13.9 0.2 0.067 13.1 0.2 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|325968552|ref|YP_004244744.1| - 0.041 12.7 0.0 0.11 11.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|325968552|ref|YP_004244744.1| - 0.046 13.1 0.0 0.098 12.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|325968552|ref|YP_004244744.1| - 0.047 13.1 0.2 0.098 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|325968552|ref|YP_004244744.1| - 0.051 13.0 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PhoH PF02562.11 gi|325968552|ref|YP_004244744.1| - 0.058 12.6 0.1 0.75 8.9 0.1 2.4 2 1 0 2 2 2 0 PhoH-like protein AAA_24 PF13479.1 gi|325968552|ref|YP_004244744.1| - 0.068 12.7 0.2 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain Polyoma_lg_T_C PF06431.6 gi|325968552|ref|YP_004244744.1| - 0.079 11.6 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus Arch_ATPase PF01637.13 gi|325968552|ref|YP_004244744.1| - 0.085 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase CobU PF02283.11 gi|325968552|ref|YP_004244744.1| - 0.11 11.9 0.2 0.8 9.0 0.1 2.2 3 0 0 3 3 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_30 PF13604.1 gi|325968552|ref|YP_004244744.1| - 0.11 12.0 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|325968552|ref|YP_004244744.1| - 0.12 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_13 PF13166.1 gi|325968552|ref|YP_004244744.1| - 0.15 10.4 0.0 0.21 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain CarboxypepD_reg PF13620.1 gi|325968554|ref|YP_004244746.1| - 4.5e-05 23.4 3.1 0.089 12.8 0.3 3.1 2 1 1 3 3 3 2 Carboxypeptidase regulatory-like domain Big_3_4 PF13754.1 gi|325968554|ref|YP_004244746.1| - 0.0002 21.6 0.8 0.2 12.0 0.0 2.9 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) DUF4480 PF13715.1 gi|325968554|ref|YP_004244746.1| - 0.0011 19.0 0.6 2.7 8.0 0.1 3.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) UbiA PF01040.13 gi|325968555|ref|YP_004244747.1| - 0.34 10.0 9.0 0.41 9.8 6.2 1.1 1 0 0 1 1 1 0 UbiA prenyltransferase family UPF0060 PF02694.10 gi|325968555|ref|YP_004244747.1| - 0.59 10.1 6.4 0.67 9.9 4.4 1.1 1 0 0 1 1 1 0 Uncharacterised BCR, YnfA/UPF0060 family DUF1230 PF06799.6 gi|325968555|ref|YP_004244747.1| - 0.68 9.7 5.5 0.93 9.3 3.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1230) DUF1616 PF07760.6 gi|325968557|ref|YP_004244749.1| - 4e-20 72.1 16.1 5.4e-20 71.6 11.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) LrgB PF04172.11 gi|325968557|ref|YP_004244749.1| - 0.16 11.0 9.3 0.23 10.5 6.4 1.3 1 0 0 1 1 1 0 LrgB-like family Glycos_transf_2 PF00535.21 gi|325968558|ref|YP_004244750.1| - 7.5e-28 97.3 0.0 1e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968558|ref|YP_004244750.1| - 6.3e-12 45.7 0.0 7.4e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transferase PF00483.18 gi|325968558|ref|YP_004244750.1| - 0.044 13.0 0.0 0.069 12.4 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase Glyco_transf_21 PF13506.1 gi|325968558|ref|YP_004244750.1| - 0.12 11.6 0.1 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.15 gi|325968560|ref|YP_004244752.1| - 2e-10 40.3 0.0 1.4e-09 37.6 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968560|ref|YP_004244752.1| - 7.4e-06 26.1 0.0 0.00026 21.1 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 GFO_IDH_MocA PF01408.17 gi|325968561|ref|YP_004244753.1| - 2.3e-14 53.9 0.0 3.7e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|325968561|ref|YP_004244753.1| - 9.8e-05 22.1 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|325968561|ref|YP_004244753.1| - 0.0005 20.4 0.4 0.001 19.4 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|325968561|ref|YP_004244753.1| - 0.0048 16.9 0.1 0.0099 15.9 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|325968561|ref|YP_004244753.1| - 0.024 14.0 2.1 0.054 12.8 0.6 2.0 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|325968561|ref|YP_004244753.1| - 0.047 13.2 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|325968561|ref|YP_004244753.1| - 0.055 13.4 0.1 0.12 12.3 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|325968561|ref|YP_004244753.1| - 0.07 12.7 0.1 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|325968561|ref|YP_004244753.1| - 0.07 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Omega_Repress PF07764.6 gi|325968561|ref|YP_004244753.1| - 0.094 13.0 0.2 0.53 10.6 0.1 2.2 1 1 1 2 2 2 0 Omega Transcriptional Repressor Glycos_transf_1 PF00534.15 gi|325968563|ref|YP_004244755.1| - 2.4e-33 114.9 0.0 3.4e-33 114.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325968563|ref|YP_004244755.1| - 1.7e-18 66.9 0.1 6.7e-18 65.0 0.0 1.9 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|325968563|ref|YP_004244755.1| - 5.1e-17 62.4 0.1 1e-14 55.0 0.0 2.4 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|325968563|ref|YP_004244755.1| - 1.8e-15 57.2 0.0 3.3e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968563|ref|YP_004244755.1| - 3.8e-11 43.0 0.0 8.1e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|325968563|ref|YP_004244755.1| - 3e-07 30.1 0.0 0.00038 20.0 0.0 2.5 1 1 0 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|325968563|ref|YP_004244755.1| - 9.8e-06 25.4 0.0 1.8e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.1 gi|325968564|ref|YP_004244756.1| - 3.5e-18 66.2 0.9 2.2e-17 63.6 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|325968564|ref|YP_004244756.1| - 5.9e-16 58.3 0.0 9.9e-16 57.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325968564|ref|YP_004244756.1| - 5.3e-15 55.5 0.4 9.4e-15 54.7 0.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|325968564|ref|YP_004244756.1| - 2.2e-11 44.0 0.0 6.1e-11 42.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|325968564|ref|YP_004244756.1| - 2.5e-07 30.6 0.0 8.8e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|325968564|ref|YP_004244756.1| - 0.0028 17.1 1.8 0.015 14.7 0.1 2.2 1 1 1 2 2 2 1 Starch synthase catalytic domain DLIC PF05783.6 gi|325968564|ref|YP_004244756.1| - 0.059 12.0 0.0 0.083 11.5 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Glycos_transf_2 PF00535.21 gi|325968565|ref|YP_004244757.1| - 1.3e-15 57.4 0.1 1.4e-15 57.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.1 gi|325968565|ref|YP_004244757.1| - 0.0011 19.2 0.0 0.0019 18.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|325968565|ref|YP_004244757.1| - 0.0023 17.0 0.0 0.0036 16.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|325968568|ref|YP_004244760.1| - 1.3e-24 86.7 0.0 2e-24 86.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968568|ref|YP_004244760.1| - 4.2e-16 59.4 0.0 6.5e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|325968568|ref|YP_004244760.1| - 3.5e-08 32.8 0.0 2.4e-07 30.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|325968568|ref|YP_004244760.1| - 2.9e-07 30.3 0.4 8.3e-07 28.8 0.4 1.7 2 0 0 2 2 2 1 Glycosyl transferase family group 2 DUF2012 PF09430.5 gi|325968568|ref|YP_004244760.1| - 0.015 15.0 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) Glyco_tranf_2_4 PF13704.1 gi|325968568|ref|YP_004244760.1| - 0.041 14.2 0.0 0.13 12.6 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|325968568|ref|YP_004244760.1| - 0.041 13.1 1.4 0.91 8.7 0.0 2.8 2 1 1 3 3 3 0 Glycosyltransferase like family Glycos_transf_2 PF00535.21 gi|325968569|ref|YP_004244761.1| - 2.8e-14 53.1 0.2 4.6e-14 52.4 0.2 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968569|ref|YP_004244761.1| - 9.8e-08 32.0 0.0 1.1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_21 PF05050.7 gi|325968570|ref|YP_004244762.1| - 2.7e-11 43.6 0.0 4.3e-11 43.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|325968570|ref|YP_004244762.1| - 0.0015 19.0 0.0 0.0025 18.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_22 PF13383.1 gi|325968570|ref|YP_004244762.1| - 0.023 14.2 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.21 gi|325968571|ref|YP_004244763.1| - 6.6e-13 48.6 0.7 8.2e-13 48.3 0.5 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968571|ref|YP_004244763.1| - 5.7e-06 26.3 0.0 8.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|325968571|ref|YP_004244763.1| - 0.0062 15.6 0.2 0.0088 15.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|325968572|ref|YP_004244764.1| - 1.3e-14 54.0 0.0 1.5e-14 53.7 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968572|ref|YP_004244764.1| - 7e-11 42.4 0.0 7.5e-11 42.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968572|ref|YP_004244764.1| - 4.3e-06 26.9 0.0 5.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Nse4-Nse3_bdg PF15412.1 gi|325968572|ref|YP_004244764.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE DUF1628 PF07790.6 gi|325968574|ref|YP_004244766.1| - 6.8e-07 29.9 0.1 2.1e-06 28.3 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) HALZ PF02183.13 gi|325968574|ref|YP_004244766.1| - 0.23 11.2 3.4 0.44 10.2 2.3 1.5 1 0 0 1 1 1 0 Homeobox associated leucine zipper Polysacc_synt PF01943.12 gi|325968575|ref|YP_004244767.1| - 3.4e-16 59.3 32.8 3.4e-16 59.3 22.8 2.3 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|325968575|ref|YP_004244767.1| - 3.7e-07 29.8 30.6 3.7e-07 29.8 21.2 3.0 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Glycos_transf_1 PF00534.15 gi|325968576|ref|YP_004244768.1| - 1.9e-22 79.5 0.0 2.7e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968576|ref|YP_004244768.1| - 1.3e-13 51.2 0.0 2.1e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325968576|ref|YP_004244768.1| - 4.7e-08 32.9 0.0 1.7e-07 31.1 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|325968576|ref|YP_004244768.1| - 2.7e-05 24.3 0.0 6.5e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Exostosin PF03016.10 gi|325968576|ref|YP_004244768.1| - 0.035 13.1 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Exostosin family AAA_31 PF13614.1 gi|325968576|ref|YP_004244768.1| - 0.075 12.9 0.0 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|325968577|ref|YP_004244769.1| - 0.005 15.9 0.0 0.0075 15.3 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|325968577|ref|YP_004244769.1| - 0.034 14.4 0.2 0.54 10.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|325968577|ref|YP_004244769.1| - 0.064 13.1 0.0 1.6 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.6 gi|325968577|ref|YP_004244769.1| - 0.069 11.8 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain Thymidylate_kin PF02223.12 gi|325968577|ref|YP_004244769.1| - 0.12 11.6 0.0 1.7 7.9 0.0 2.1 1 1 0 2 2 2 0 Thymidylate kinase Glyco_trans_4_4 PF13579.1 gi|325968578|ref|YP_004244770.1| - 0.0015 18.6 0.0 0.0024 18.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|325968578|ref|YP_004244770.1| - 0.0073 16.0 0.0 0.014 15.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|325968578|ref|YP_004244770.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|325968578|ref|YP_004244770.1| - 0.019 14.7 0.0 0.046 13.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|325968579|ref|YP_004244771.1| - 1.2e-19 70.3 0.0 1.6e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968579|ref|YP_004244771.1| - 1.1e-08 35.2 0.0 1.9e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.8 gi|325968579|ref|YP_004244771.1| - 0.00032 19.0 0.1 0.00052 18.4 0.1 1.3 1 0 0 1 1 1 1 Glycogen synthase Glyco_trans_1_2 PF13524.1 gi|325968579|ref|YP_004244771.1| - 0.018 15.2 0.0 0.054 13.7 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968580|ref|YP_004244772.1| - 3.7e-08 33.6 0.0 7.3e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|325968580|ref|YP_004244772.1| - 0.0034 16.8 0.0 0.0075 15.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|325968580|ref|YP_004244772.1| - 0.057 13.2 0.7 0.26 11.1 0.2 2.2 2 0 0 2 2 2 0 Glycosyl transferase 4-like Cys_Met_Meta_PP PF01053.15 gi|325968580|ref|YP_004244772.1| - 0.13 10.5 0.1 0.19 9.9 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Sulfatase PF00884.18 gi|325968581|ref|YP_004244773.1| - 7e-36 123.9 0.0 9.8e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|325968581|ref|YP_004244773.1| - 1.4e-18 67.3 0.0 6.5e-09 35.5 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|325968581|ref|YP_004244773.1| - 0.00078 17.9 0.0 0.0013 17.2 0.0 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Glyco_tranf_2_3 PF13641.1 gi|325968582|ref|YP_004244774.1| - 1.2e-17 64.4 0.7 4.5e-17 62.6 0.2 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|325968582|ref|YP_004244774.1| - 1.5e-11 44.3 1.6 2.8e-11 43.5 0.9 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|325968582|ref|YP_004244774.1| - 2.8e-11 43.3 0.5 4.7e-11 42.6 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|325968582|ref|YP_004244774.1| - 3.5e-07 29.6 0.0 2e-06 27.2 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|325968582|ref|YP_004244774.1| - 0.0036 16.4 0.5 0.0085 15.2 0.3 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 DUF2118 PF09891.4 gi|325968582|ref|YP_004244774.1| - 0.11 12.1 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) Polysacc_deac_1 PF01522.16 gi|325968583|ref|YP_004244775.1| - 4e-17 62.0 0.0 5.4e-17 61.5 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase Glyco_hydro_57 PF03065.10 gi|325968583|ref|YP_004244775.1| - 0.17 10.7 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 Glycos_transf_2 PF00535.21 gi|325968584|ref|YP_004244776.1| - 6.6e-17 61.6 0.1 1.7e-16 60.3 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968584|ref|YP_004244776.1| - 1.8e-14 54.0 0.0 6.5e-14 52.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|325968584|ref|YP_004244776.1| - 0.0028 17.9 0.0 0.0047 17.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Asp_protease_2 PF13650.1 gi|325968585|ref|YP_004244777.1| - 0.0036 17.7 0.1 0.0044 17.4 0.1 1.1 1 0 0 1 1 1 1 Aspartyl protease PAPS_reduct PF01507.14 gi|325968586|ref|YP_004244778.1| - 2.7e-34 118.4 0.0 5.9e-34 117.3 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|325968586|ref|YP_004244778.1| - 3.8e-06 26.5 0.0 6.1e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 PP-loop family ATP_bind_4 PF01902.12 gi|325968586|ref|YP_004244778.1| - 6.7e-05 22.3 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 ATP-binding region Asn_synthase PF00733.16 gi|325968586|ref|YP_004244778.1| - 0.00031 20.3 0.0 0.0005 19.6 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|325968586|ref|YP_004244778.1| - 0.0025 17.1 0.0 0.0036 16.6 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|325968586|ref|YP_004244778.1| - 0.0066 15.3 0.0 0.011 14.6 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Sulfatase PF00884.18 gi|325968587|ref|YP_004244779.1| - 1.3e-13 50.8 0.0 2.5e-12 46.6 0.0 2.3 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|325968587|ref|YP_004244779.1| - 7.5e-08 32.0 0.1 7.6e-07 28.7 0.1 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PaREP1 PF05942.6 gi|325968588|ref|YP_004244780.1| - 5.5e-36 122.9 0.7 8.8e-36 122.2 0.5 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF3701 PF12482.3 gi|325968588|ref|YP_004244780.1| - 0.0071 16.0 1.6 3.3 7.5 0.0 2.6 2 1 0 3 3 3 2 Phage integrase protein Methyltransf_21 PF05050.7 gi|325968590|ref|YP_004244782.1| - 3.3e-13 49.9 0.0 4.1e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|325968590|ref|YP_004244782.1| - 0.00039 20.9 0.0 0.00087 19.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|325968590|ref|YP_004244782.1| - 0.009 15.6 0.2 0.037 13.6 0.0 1.8 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_22 PF13383.1 gi|325968590|ref|YP_004244782.1| - 0.013 15.0 0.0 0.017 14.7 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.21 gi|325968592|ref|YP_004244784.1| - 2.8e-21 75.9 0.0 5.2e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968592|ref|YP_004244784.1| - 4.7e-13 49.4 0.0 1e-12 48.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|325968592|ref|YP_004244784.1| - 0.018 14.7 0.0 4.2 7.0 0.0 2.2 2 0 0 2 2 2 0 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|325968592|ref|YP_004244784.1| - 0.021 15.1 0.0 0.037 14.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.15 gi|325968593|ref|YP_004244785.1| - 9.8e-15 54.3 0.0 1.6e-14 53.6 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968593|ref|YP_004244785.1| - 6.6e-06 26.3 0.0 6.2e-05 23.1 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|325968593|ref|YP_004244785.1| - 0.033 12.6 0.0 0.17 10.2 0.0 1.8 1 1 1 2 2 2 0 Glycosyltransferase family 20 Glycos_transf_2 PF00535.21 gi|325968595|ref|YP_004244787.1| - 5.2e-11 42.5 0.0 6.2e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.1 gi|325968595|ref|YP_004244787.1| - 2.8e-05 24.3 0.0 4.7e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.21 gi|325968596|ref|YP_004244788.1| - 1.2e-21 77.1 0.0 1.7e-21 76.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968596|ref|YP_004244788.1| - 5e-19 69.0 0.0 9.5e-19 68.0 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|325968596|ref|YP_004244788.1| - 6.7e-06 25.4 0.0 0.056 12.6 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|325968596|ref|YP_004244788.1| - 1.3e-05 24.9 0.0 1.9e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|325968596|ref|YP_004244788.1| - 3.7e-05 22.9 0.0 9.2e-05 21.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 GlcNAc PF11397.3 gi|325968596|ref|YP_004244788.1| - 0.06 12.4 0.0 0.078 12.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase (GlcNAc) AAA_18 PF13238.1 gi|325968597|ref|YP_004244789.1| - 9.1e-08 32.4 0.0 2.1e-05 24.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|325968597|ref|YP_004244789.1| - 2.5e-07 30.4 0.0 4.8e-07 29.5 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|325968597|ref|YP_004244789.1| - 3.5e-06 27.8 0.0 1e-05 26.3 0.0 1.9 2 1 1 3 3 1 1 AAA domain AAA_33 PF13671.1 gi|325968597|ref|YP_004244789.1| - 4e-06 26.7 0.1 0.00022 21.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|325968597|ref|YP_004244789.1| - 0.0002 20.9 0.0 0.00029 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|325968597|ref|YP_004244789.1| - 0.00034 20.8 0.0 0.00093 19.4 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|325968597|ref|YP_004244789.1| - 0.00036 20.6 0.0 0.00074 19.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325968597|ref|YP_004244789.1| - 0.00036 20.5 0.0 0.00053 20.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|325968597|ref|YP_004244789.1| - 0.00075 19.1 0.0 0.0014 18.3 0.0 1.5 1 0 0 1 1 1 1 NACHT domain NTPase_1 PF03266.10 gi|325968597|ref|YP_004244789.1| - 0.0012 18.6 0.0 0.011 15.4 0.0 2.0 2 0 0 2 2 2 1 NTPase AAA_5 PF07728.9 gi|325968597|ref|YP_004244789.1| - 0.0012 18.5 0.0 0.0042 16.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|325968597|ref|YP_004244789.1| - 0.0018 17.7 0.0 0.0034 16.8 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|325968597|ref|YP_004244789.1| - 0.0023 17.9 0.0 0.0046 16.9 0.0 1.5 2 0 0 2 2 1 1 AAA domain Thymidylate_kin PF02223.12 gi|325968597|ref|YP_004244789.1| - 0.0024 17.2 0.1 0.0073 15.6 0.0 1.8 2 0 0 2 2 2 1 Thymidylate kinase ABC_tran PF00005.22 gi|325968597|ref|YP_004244789.1| - 0.0028 17.9 0.1 0.0047 17.2 0.1 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968597|ref|YP_004244789.1| - 0.0031 17.5 0.0 0.0054 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|325968597|ref|YP_004244789.1| - 0.0079 15.8 0.1 0.048 13.3 0.0 2.0 2 0 0 2 2 2 1 Adenylylsulphate kinase UPF0079 PF02367.12 gi|325968597|ref|YP_004244789.1| - 0.0085 15.7 0.1 0.025 14.1 0.1 1.8 1 1 1 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|325968597|ref|YP_004244789.1| - 0.01 14.7 0.0 0.015 14.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein LpxK PF02606.9 gi|325968597|ref|YP_004244789.1| - 0.012 14.6 0.1 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Zeta_toxin PF06414.7 gi|325968597|ref|YP_004244789.1| - 0.014 14.5 0.0 0.027 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|325968597|ref|YP_004244789.1| - 0.023 14.6 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|325968597|ref|YP_004244789.1| - 0.023 14.8 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|325968597|ref|YP_004244789.1| - 0.025 14.2 0.0 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|325968597|ref|YP_004244789.1| - 0.03 14.0 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|325968597|ref|YP_004244789.1| - 0.035 13.6 0.1 0.083 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|325968597|ref|YP_004244789.1| - 0.039 13.1 0.0 0.074 12.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|325968597|ref|YP_004244789.1| - 0.044 13.3 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.4 gi|325968597|ref|YP_004244789.1| - 0.059 12.8 0.1 0.098 12.1 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|325968597|ref|YP_004244789.1| - 0.06 12.7 0.1 0.087 12.2 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|325968597|ref|YP_004244789.1| - 0.063 12.8 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|325968597|ref|YP_004244789.1| - 0.089 12.1 0.0 0.21 10.9 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain LPAM_1 PF08139.7 gi|325968597|ref|YP_004244789.1| - 0.089 13.0 0.1 0.28 11.4 0.1 2.0 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site RuvB_N PF05496.7 gi|325968597|ref|YP_004244789.1| - 0.097 11.6 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|325968597|ref|YP_004244789.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_29 PF13555.1 gi|325968597|ref|YP_004244789.1| - 0.13 11.8 0.1 0.24 10.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.1 gi|325968597|ref|YP_004244789.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain TrwB_AAD_bind PF10412.4 gi|325968597|ref|YP_004244789.1| - 0.15 10.6 0.0 0.21 10.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Gtr1_RagA PF04670.7 gi|325968597|ref|YP_004244789.1| - 0.16 11.1 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Mg_chelatase PF01078.16 gi|325968597|ref|YP_004244789.1| - 0.17 11.0 0.1 0.25 10.4 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|325968597|ref|YP_004244789.1| - 0.19 12.0 0.1 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Glyco_trans_4_4 PF13579.1 gi|325968598|ref|YP_004244790.1| - 5.5e-06 26.6 0.3 8.1e-06 26.0 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|325968599|ref|YP_004244791.1| - 1e-18 67.3 0.0 9.4e-18 64.2 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968599|ref|YP_004244791.1| - 1.2e-09 38.3 0.0 2.5e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|325968599|ref|YP_004244791.1| - 3.6e-07 30.4 3.7 7.1e-07 29.5 2.6 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|325968599|ref|YP_004244791.1| - 0.00057 19.6 0.7 0.0067 16.1 0.5 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|325968599|ref|YP_004244791.1| - 0.0012 19.1 0.0 0.0022 18.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|325968600|ref|YP_004244792.1| - 3.8e-09 36.4 0.1 8e-09 35.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|325968600|ref|YP_004244792.1| - 0.00026 20.1 0.2 0.0041 16.2 0.0 2.2 1 1 1 2 2 2 1 Glycosyltransferase like family 2 UAA PF08449.6 gi|325968600|ref|YP_004244792.1| - 0.014 14.2 0.1 0.023 13.6 0.1 1.2 1 0 0 1 1 1 0 UAA transporter family Methuselah_N PF06652.7 gi|325968600|ref|YP_004244792.1| - 0.098 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Methuselah N-terminus Methyltransf_21 PF05050.7 gi|325968601|ref|YP_004244793.1| - 1e-25 90.6 0.0 1.2e-25 90.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.11 gi|325968601|ref|YP_004244793.1| - 1e-06 28.4 0.1 1.4e-06 28.0 0.1 1.4 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|325968601|ref|YP_004244793.1| - 1.9e-06 28.4 0.0 2.6e-06 27.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|325968601|ref|YP_004244793.1| - 5e-05 22.4 0.1 9.4e-05 21.5 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase V_cholerae_RfbT PF05575.6 gi|325968601|ref|YP_004244793.1| - 5.6e-05 22.3 1.2 9.3e-05 21.6 0.8 1.3 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein LpxC PF03331.8 gi|325968601|ref|YP_004244793.1| - 0.003 16.5 0.2 0.064 12.2 0.0 2.0 1 1 1 2 2 2 1 UDP-3-O-acyl N-acetylglycosamine deacetylase Methyltransf_12 PF08242.7 gi|325968601|ref|YP_004244793.1| - 0.0032 17.9 0.0 0.0048 17.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|325968601|ref|YP_004244793.1| - 0.0059 16.0 0.0 0.0085 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|325968601|ref|YP_004244793.1| - 0.12 12.3 0.0 0.16 12.0 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Glyco_trans_1_4 PF13692.1 gi|325968602|ref|YP_004244794.1| - 7e-05 22.9 0.0 0.00012 22.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968602|ref|YP_004244794.1| - 0.014 15.6 0.0 0.034 14.4 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|325968602|ref|YP_004244794.1| - 0.058 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.16 gi|325968603|ref|YP_004244795.1| - 4e-23 81.3 0.0 5.7e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase Phage_XkdX PF09693.5 gi|325968603|ref|YP_004244795.1| - 0.017 14.6 0.0 0.044 13.2 0.0 1.8 1 0 0 1 1 1 0 Phage uncharacterised protein (Phage_XkdX) DUF2746 PF10874.3 gi|325968603|ref|YP_004244795.1| - 0.15 12.2 1.2 1.1 9.5 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2746) Glycos_transf_1 PF00534.15 gi|325968604|ref|YP_004244796.1| - 3.2e-12 46.1 0.0 4.9e-12 45.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968604|ref|YP_004244796.1| - 1.4e-08 35.0 0.0 2.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968604|ref|YP_004244796.1| - 6.1e-06 26.4 0.0 1.6e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|325968605|ref|YP_004244797.1| - 2.7e-19 69.2 0.0 4.1e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968605|ref|YP_004244797.1| - 4.9e-16 59.1 0.0 1.1e-15 57.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968605|ref|YP_004244797.1| - 1.6e-06 28.2 0.0 3.2e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 EpsG PF14897.1 gi|325968606|ref|YP_004244798.1| - 4.5e-07 29.1 53.4 6.6e-06 25.2 21.7 2.1 2 0 0 2 2 2 2 EpsG family Epimerase PF01370.16 gi|325968607|ref|YP_004244799.1| - 6.6e-58 195.9 0.2 1.1e-57 195.2 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|325968607|ref|YP_004244799.1| - 6.9e-27 93.8 0.0 8.5e-27 93.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|325968607|ref|YP_004244799.1| - 1.1e-23 83.5 0.0 6.2e-23 81.1 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|325968607|ref|YP_004244799.1| - 4.3e-21 75.0 0.0 5.1e-21 74.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|325968607|ref|YP_004244799.1| - 2.7e-16 60.1 0.0 5.6e-16 59.0 0.0 1.6 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|325968607|ref|YP_004244799.1| - 1.1e-15 57.2 0.2 3.1e-14 52.5 0.2 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|325968607|ref|YP_004244799.1| - 1.6e-12 47.6 0.5 1.8e-11 44.2 0.4 2.2 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|325968607|ref|YP_004244799.1| - 1.3e-09 37.7 0.1 2.8e-09 36.6 0.1 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|325968607|ref|YP_004244799.1| - 3.8e-07 29.9 0.0 9.7e-07 28.6 0.0 1.7 1 0 0 1 1 1 1 KR domain NAD_binding_2 PF03446.10 gi|325968607|ref|YP_004244799.1| - 0.0051 16.6 0.0 0.013 15.2 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|325968607|ref|YP_004244799.1| - 0.013 15.5 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain PHB_acc_N PF07879.6 gi|325968607|ref|YP_004244799.1| - 0.029 14.1 0.1 12 5.7 0.0 2.6 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain 3HCDH_N PF02737.13 gi|325968607|ref|YP_004244799.1| - 0.091 12.4 0.0 0.18 11.4 0.0 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_1 PF00534.15 gi|325968608|ref|YP_004244800.1| - 3.3e-31 108.0 0.0 7.8e-31 106.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968608|ref|YP_004244800.1| - 1e-15 58.1 0.9 3e-14 53.3 0.0 2.8 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|325968608|ref|YP_004244800.1| - 2e-13 50.8 0.1 3.4e-13 50.0 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|325968608|ref|YP_004244800.1| - 2.6e-09 37.0 0.5 4e-09 36.4 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|325968608|ref|YP_004244800.1| - 1.7e-07 30.9 0.1 2e-06 27.5 0.2 2.1 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|325968608|ref|YP_004244800.1| - 1.4e-05 24.9 0.3 2.8e-05 23.9 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like PIGA PF08288.7 gi|325968608|ref|YP_004244800.1| - 0.003 17.8 0.1 0.011 16.0 0.0 2.0 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_trans_1_2 PF13524.1 gi|325968608|ref|YP_004244800.1| - 0.0065 16.7 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.21 gi|325968609|ref|YP_004244801.1| - 1.7e-17 63.6 0.2 2.2e-17 63.2 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968609|ref|YP_004244801.1| - 4.2e-12 46.3 0.0 5.1e-11 42.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|325968609|ref|YP_004244801.1| - 0.00082 18.5 0.1 0.0011 18.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|325968609|ref|YP_004244801.1| - 0.011 15.0 0.0 0.041 13.1 0.0 2.0 2 1 0 2 2 2 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|325968609|ref|YP_004244801.1| - 0.016 15.4 0.0 0.041 14.1 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|325968609|ref|YP_004244801.1| - 0.043 13.5 0.2 0.15 11.7 0.1 1.8 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.15 gi|325968610|ref|YP_004244802.1| - 7.4e-26 90.5 0.1 8.5e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968610|ref|YP_004244802.1| - 1.5e-07 31.6 0.0 2.1e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968610|ref|YP_004244802.1| - 4.1e-06 26.9 0.0 6.7e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 eIF3_p135 PF12807.2 gi|325968610|ref|YP_004244802.1| - 0.18 11.7 2.0 0.95 9.3 0.0 2.6 3 0 0 3 3 3 0 Translation initiation factor eIF3 subunit 135 Glycos_transf_1 PF00534.15 gi|325968611|ref|YP_004244803.1| - 2.6e-20 72.5 0.0 4.1e-20 71.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|325968611|ref|YP_004244803.1| - 1.4e-14 54.5 0.0 2.7e-14 53.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|325968611|ref|YP_004244803.1| - 3.7e-14 52.8 0.4 5.4e-14 52.2 0.3 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|325968611|ref|YP_004244803.1| - 4.5e-10 39.8 0.0 1.3e-08 35.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|325968611|ref|YP_004244803.1| - 3e-05 23.8 0.4 0.00027 20.7 0.1 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|325968611|ref|YP_004244803.1| - 0.0006 20.0 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|325968611|ref|YP_004244803.1| - 0.0013 18.2 3.6 0.015 14.7 2.3 2.1 1 1 1 2 2 2 1 Starch synthase catalytic domain Arch_ATPase PF01637.13 gi|325968613|ref|YP_004244805.1| - 3.9e-52 177.2 0.0 5.3e-52 176.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|325968613|ref|YP_004244805.1| - 0.01 16.0 0.0 0.042 14.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain DAP3 PF10236.4 gi|325968613|ref|YP_004244805.1| - 0.018 14.0 0.0 0.12 11.3 0.0 2.1 1 1 1 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA PF00004.24 gi|325968613|ref|YP_004244805.1| - 0.026 14.7 0.0 0.14 12.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DEDD_Tnp_IS110 PF01548.12 gi|325968613|ref|YP_004244805.1| - 0.041 13.5 0.0 0.092 12.4 0.0 1.5 1 0 0 1 1 1 0 Transposase AAA_33 PF13671.1 gi|325968613|ref|YP_004244805.1| - 0.044 13.6 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|325968613|ref|YP_004244805.1| - 0.054 13.4 0.1 0.25 11.3 0.0 2.2 1 1 0 1 1 1 0 AAA ATPase domain PGK PF00162.14 gi|325968614|ref|YP_004244806.1| - 0.014 14.0 0.0 0.018 13.6 0.0 1.1 1 0 0 1 1 1 0 Phosphoglycerate kinase DUF1422 PF07226.6 gi|325968616|ref|YP_004244808.1| - 0.037 13.7 0.1 0.11 12.2 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1422) Polysacc_synt PF01943.12 gi|325968617|ref|YP_004244809.1| - 1e-08 34.7 32.1 1e-08 34.7 22.2 3.0 1 1 1 3 3 3 2 Polysaccharide biosynthesis protein Pox_A9 PF04835.7 gi|325968618|ref|YP_004244810.1| - 0.28 11.1 2.3 0.28 11.1 0.2 2.1 2 0 0 2 2 2 0 A9 protein conserved region DUF1616 PF07760.6 gi|325968619|ref|YP_004244811.1| - 1.7e-18 66.7 10.6 5.1e-18 65.2 7.3 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) 7tm_7 PF08395.7 gi|325968619|ref|YP_004244811.1| - 0.009 15.0 1.5 0.009 15.0 1.0 1.8 1 1 0 2 2 2 1 7tm Chemosensory receptor LRR19-TM PF15176.1 gi|325968619|ref|YP_004244811.1| - 0.17 11.5 3.2 3.2 7.5 0.7 2.3 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain DUF1616 PF07760.6 gi|325968620|ref|YP_004244812.1| - 9.9e-33 113.4 13.1 1.3e-32 113.0 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4395 PF14340.1 gi|325968620|ref|YP_004244812.1| - 0.037 14.1 4.3 0.076 13.0 2.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) DUF2069 PF09842.4 gi|325968622|ref|YP_004244814.1| - 0.096 12.6 4.9 0.15 11.9 3.4 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2069) PIG-U PF06728.8 gi|325968622|ref|YP_004244814.1| - 0.85 8.4 10.1 1 8.1 7.0 1.1 1 0 0 1 1 1 0 GPI transamidase subunit PIG-U Peptidase_M50 PF02163.17 gi|325968622|ref|YP_004244814.1| - 3.7 6.4 6.2 0.32 9.9 1.2 1.5 2 0 0 2 2 2 0 Peptidase family M50 CarboxypepD_reg PF13620.1 gi|325968623|ref|YP_004244815.1| - 8.4e-06 25.7 2.6 2.5e-05 24.2 0.2 2.7 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain DUF4129 PF13559.1 gi|325968623|ref|YP_004244815.1| - 0.0038 17.1 0.0 0.0078 16.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF4480 PF13715.1 gi|325968623|ref|YP_004244815.1| - 0.01 15.8 0.2 0.053 13.5 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4480) PaREP1 PF05942.6 gi|325968623|ref|YP_004244815.1| - 0.1 12.4 0.0 0.3 10.9 0.0 1.7 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family Dioxygenase_C PF00775.16 gi|325968623|ref|YP_004244815.1| - 0.14 11.3 0.1 0.5 9.5 0.1 1.8 1 1 1 2 2 2 0 Dioxygenase DUF4350 PF14258.1 gi|325968624|ref|YP_004244816.1| - 0.0038 17.4 0.0 0.01 16.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) OppC_N PF12911.2 gi|325968624|ref|YP_004244816.1| - 0.067 12.5 0.6 0.067 12.5 0.4 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C AAA_3 PF07726.6 gi|325968625|ref|YP_004244817.1| - 3.3e-38 130.2 0.1 5.1e-38 129.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|325968625|ref|YP_004244817.1| - 3.9e-15 55.7 0.1 1.7e-14 53.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|325968625|ref|YP_004244817.1| - 4e-06 25.8 1.2 2.7e-05 23.1 0.8 2.1 1 1 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|325968625|ref|YP_004244817.1| - 1.3e-05 24.4 0.6 0.0047 16.1 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|325968625|ref|YP_004244817.1| - 3e-05 24.2 0.7 0.00017 21.7 0.4 2.4 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|325968625|ref|YP_004244817.1| - 7.1e-05 21.9 0.3 0.00021 20.3 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|325968625|ref|YP_004244817.1| - 0.00016 21.8 0.2 0.00098 19.2 0.1 2.1 1 1 1 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|325968625|ref|YP_004244817.1| - 0.00057 19.3 0.2 1.2 8.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_23 PF13476.1 gi|325968625|ref|YP_004244817.1| - 0.0016 18.7 0.0 0.0025 18.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|325968625|ref|YP_004244817.1| - 0.0017 17.8 0.1 0.0069 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|325968625|ref|YP_004244817.1| - 0.0024 17.6 0.3 0.0058 16.3 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain RNA_helicase PF00910.17 gi|325968625|ref|YP_004244817.1| - 0.0039 17.3 0.0 0.012 15.7 0.0 1.9 2 0 0 2 2 2 1 RNA helicase AAA_PrkA PF08298.6 gi|325968625|ref|YP_004244817.1| - 0.0058 15.3 0.2 0.75 8.4 0.0 2.1 2 0 0 2 2 2 1 PrkA AAA domain AAA_16 PF13191.1 gi|325968625|ref|YP_004244817.1| - 0.0064 16.5 0.3 0.029 14.3 0.1 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|325968625|ref|YP_004244817.1| - 0.0071 15.8 1.0 0.012 15.0 0.2 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|325968625|ref|YP_004244817.1| - 0.0079 16.0 0.2 0.24 11.3 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|325968625|ref|YP_004244817.1| - 0.0087 15.5 0.2 0.018 14.5 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|325968625|ref|YP_004244817.1| - 0.01 15.4 0.3 0.019 14.5 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|325968625|ref|YP_004244817.1| - 0.013 15.8 0.1 0.043 14.1 0.0 1.9 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|325968625|ref|YP_004244817.1| - 0.014 15.6 0.4 0.046 14.0 0.1 1.9 2 0 0 2 2 2 0 ABC transporter T2SE PF00437.15 gi|325968625|ref|YP_004244817.1| - 0.021 13.7 0.2 0.045 12.6 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|325968625|ref|YP_004244817.1| - 0.022 14.2 0.2 0.62 9.4 0.1 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_2 PF07724.9 gi|325968625|ref|YP_004244817.1| - 0.024 14.5 0.0 0.17 11.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|325968625|ref|YP_004244817.1| - 0.025 14.2 0.7 0.067 12.8 0.5 1.7 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|325968625|ref|YP_004244817.1| - 0.034 14.0 0.2 0.078 12.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|325968625|ref|YP_004244817.1| - 0.037 12.7 0.0 0.053 12.1 0.0 1.4 1 1 0 1 1 1 0 G-protein alpha subunit Viral_helicase1 PF01443.13 gi|325968625|ref|YP_004244817.1| - 0.049 13.1 0.0 0.072 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|325968625|ref|YP_004244817.1| - 0.053 14.3 0.2 0.12 13.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain TPD52 PF04201.10 gi|325968625|ref|YP_004244817.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Tumour protein D52 family AAA_21 PF13304.1 gi|325968625|ref|YP_004244817.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|325968625|ref|YP_004244817.1| - 0.14 11.6 0.7 0.31 10.5 0.5 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|325968625|ref|YP_004244817.1| - 0.19 10.9 0.0 0.36 10.0 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|325968625|ref|YP_004244817.1| - 0.2 10.8 0.1 0.31 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|325968625|ref|YP_004244817.1| - 1.1 8.6 4.0 0.29 10.5 0.5 1.7 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF58 PF01882.13 gi|325968626|ref|YP_004244818.1| - 6.6e-12 45.4 0.0 1.4e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Glycos_transf_2 PF00535.21 gi|325968627|ref|YP_004244819.1| - 2.1e-34 118.6 0.2 3e-34 118.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|325968627|ref|YP_004244819.1| - 3.2e-29 102.3 0.0 4.5e-29 101.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|325968627|ref|YP_004244819.1| - 1.4e-15 57.5 1.2 2.2e-15 56.8 0.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|325968627|ref|YP_004244819.1| - 4.6e-11 42.3 1.3 5.2e-11 42.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|325968627|ref|YP_004244819.1| - 6.8e-10 38.4 0.0 1e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|325968627|ref|YP_004244819.1| - 0.00032 20.9 0.1 0.00067 19.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 IncA PF04156.9 gi|325968627|ref|YP_004244819.1| - 5.3 6.5 4.7 8.5 5.9 3.3 1.3 1 0 0 1 1 1 0 IncA protein ABC_tran PF00005.22 gi|325968629|ref|YP_004244821.1| - 8.5e-30 103.8 0.0 1.1e-29 103.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968629|ref|YP_004244821.1| - 1.7e-15 57.7 0.0 4.1e-08 33.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325968629|ref|YP_004244821.1| - 5.6e-11 42.0 0.0 5.7e-09 35.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|325968629|ref|YP_004244821.1| - 5.5e-06 26.4 0.1 7.7e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|325968629|ref|YP_004244821.1| - 1.7e-05 24.4 0.2 0.00036 20.2 0.0 2.3 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|325968629|ref|YP_004244821.1| - 8.8e-05 23.3 0.2 0.00013 22.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325968629|ref|YP_004244821.1| - 0.00016 21.1 0.0 0.00028 20.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|325968629|ref|YP_004244821.1| - 0.00025 21.4 0.0 0.00033 21.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|325968629|ref|YP_004244821.1| - 0.00027 21.1 0.5 0.0019 18.3 0.3 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|325968629|ref|YP_004244821.1| - 0.00034 19.8 0.0 0.0004 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|325968629|ref|YP_004244821.1| - 0.00043 20.1 0.1 0.0058 16.5 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|325968629|ref|YP_004244821.1| - 0.00058 19.0 0.0 0.61 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_18 PF13238.1 gi|325968629|ref|YP_004244821.1| - 0.00065 20.0 0.3 0.0026 18.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|325968629|ref|YP_004244821.1| - 0.0019 17.8 0.0 0.027 14.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|325968629|ref|YP_004244821.1| - 0.0019 17.6 0.1 0.0043 16.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|325968629|ref|YP_004244821.1| - 0.003 17.0 0.0 0.012 15.0 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|325968629|ref|YP_004244821.1| - 0.0034 16.3 0.0 0.0059 15.5 0.0 1.4 1 1 0 1 1 1 1 Type II/IV secretion system protein MobB PF03205.9 gi|325968629|ref|YP_004244821.1| - 0.0036 16.9 0.0 0.0073 16.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|325968629|ref|YP_004244821.1| - 0.0083 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase Rad17 PF03215.10 gi|325968629|ref|YP_004244821.1| - 0.013 14.2 0.0 0.017 13.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|325968629|ref|YP_004244821.1| - 0.014 15.5 0.0 0.044 13.9 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|325968629|ref|YP_004244821.1| - 0.032 14.1 0.0 0.084 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|325968629|ref|YP_004244821.1| - 0.034 14.0 0.0 0.075 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|325968629|ref|YP_004244821.1| - 0.052 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.4 gi|325968629|ref|YP_004244821.1| - 0.055 12.0 0.1 0.17 10.4 0.0 1.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Adeno_IVa2 PF02456.10 gi|325968629|ref|YP_004244821.1| - 0.1 11.2 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_5 PF07728.9 gi|325968629|ref|YP_004244821.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MutS_V PF00488.16 gi|325968629|ref|YP_004244821.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 MutS domain V MacB_PCD PF12704.2 gi|325968630|ref|YP_004244822.1| - 5.1e-08 32.7 3.9 5.1e-08 32.7 2.7 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain Archease PF01951.11 gi|325968632|ref|YP_004244824.1| - 7.7e-39 132.7 0.0 8.7e-39 132.6 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|325968632|ref|YP_004244824.1| - 0.061 12.9 0.2 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) Pox_A14 PF05767.7 gi|325968633|ref|YP_004244825.1| - 0.0016 18.3 2.5 0.0022 17.9 1.7 1.2 1 0 0 1 1 1 1 Poxvirus virion envelope protein A14 CD47 PF04549.9 gi|325968633|ref|YP_004244825.1| - 0.036 14.0 1.9 0.046 13.7 1.3 1.1 1 0 0 1 1 1 0 CD47 transmembrane region DUF973 PF06157.6 gi|325968633|ref|YP_004244825.1| - 0.17 10.8 4.4 0.19 10.6 3.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) TrbC PF04956.8 gi|325968633|ref|YP_004244825.1| - 0.52 10.3 5.1 0.74 9.8 3.6 1.4 1 1 0 1 1 1 0 TrbC/VIRB2 family NfeD PF01957.13 gi|325968633|ref|YP_004244825.1| - 1.4 9.0 5.4 1.8 8.6 3.7 1.2 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding PIN PF01850.16 gi|325968634|ref|YP_004244826.1| - 2e-05 24.8 0.1 2.3e-05 24.7 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF3112 PF11309.3 gi|325968635|ref|YP_004244827.1| - 1.3 8.7 5.4 1.4 8.6 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) Glycos_transf_1 PF00534.15 gi|325968637|ref|YP_004244829.1| - 2.7e-30 105.0 0.0 3.9e-30 104.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968637|ref|YP_004244829.1| - 9.6e-12 45.2 0.0 2.6e-11 43.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968637|ref|YP_004244829.1| - 9.7e-09 35.3 0.0 2.3e-08 34.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|325968637|ref|YP_004244829.1| - 3e-06 27.4 0.1 9.2e-06 25.8 0.0 1.9 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|325968637|ref|YP_004244829.1| - 0.00035 20.3 0.0 0.0012 18.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Phytoreo_Pns PF05451.6 gi|325968637|ref|YP_004244829.1| - 0.069 11.7 0.0 0.18 10.4 0.0 1.7 1 0 0 1 1 1 0 Phytoreovirus nonstructural protein Pns10/11 TM_helix PF05552.7 gi|325968638|ref|YP_004244830.1| - 3.6e-09 36.1 16.7 6.5e-07 28.9 0.1 3.5 4 0 0 4 4 4 2 Conserved TM helix Xan_ur_permease PF00860.15 gi|325968638|ref|YP_004244830.1| - 0.0024 16.4 3.9 0.0024 16.4 2.7 1.6 2 0 0 2 2 2 1 Permease family Colicin_V PF02674.11 gi|325968638|ref|YP_004244830.1| - 0.0078 16.0 21.2 0.091 12.6 5.5 3.1 1 1 2 3 3 3 2 Colicin V production protein FAD_binding_5 PF00941.16 gi|325968639|ref|YP_004244831.1| - 2.7e-51 173.3 0.0 4.3e-51 172.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase Fer2_2 PF01799.15 gi|325968639|ref|YP_004244831.1| - 1.2e-23 82.7 0.1 2.3e-23 81.8 0.1 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|325968639|ref|YP_004244831.1| - 1.1e-06 28.2 0.1 3e-06 26.8 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain CO_deh_flav_C PF03450.12 gi|325968639|ref|YP_004244831.1| - 3.2e-06 27.0 0.0 1.2e-05 25.2 0.0 2.0 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_3 PF13085.1 gi|325968639|ref|YP_004244831.1| - 0.00021 21.1 0.1 0.00054 19.7 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|325968639|ref|YP_004244831.1| - 0.046 13.5 0.1 0.096 12.5 0.1 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|325968640|ref|YP_004244832.1| - 2e-96 323.5 0.0 2.6e-96 323.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|325968640|ref|YP_004244832.1| - 1.6e-17 63.5 0.0 2.8e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF367 PF04034.8 gi|325968641|ref|YP_004244833.1| - 4.6e-36 123.2 0.0 5.9e-36 122.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|325968641|ref|YP_004244833.1| - 0.00072 19.0 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI HhH-GPD PF00730.20 gi|325968642|ref|YP_004244834.1| - 1.8e-08 34.6 0.0 2.8e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|325968642|ref|YP_004244834.1| - 0.011 15.4 0.0 0.03 14.0 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|325968642|ref|YP_004244834.1| - 0.017 15.2 0.0 9.4 6.4 0.0 2.6 3 0 0 3 3 3 0 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|325968642|ref|YP_004244834.1| - 0.35 11.1 7.8 0.53 10.5 5.4 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Spt4 PF06093.8 gi|325968643|ref|YP_004244835.1| - 3.1e-16 59.0 0.3 3.8e-16 58.7 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger UPF0547 PF10571.4 gi|325968643|ref|YP_004244835.1| - 0.0018 17.9 3.1 0.0027 17.3 2.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|325968643|ref|YP_004244835.1| - 0.0027 16.8 3.6 0.0037 16.4 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|325968643|ref|YP_004244835.1| - 0.0046 16.7 0.5 0.0067 16.2 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|325968643|ref|YP_004244835.1| - 0.0076 15.7 1.8 0.011 15.1 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|325968643|ref|YP_004244835.1| - 0.033 13.4 1.8 0.069 12.4 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zf-P11 PF03854.9 gi|325968643|ref|YP_004244835.1| - 0.054 12.9 0.9 0.12 11.8 0.3 1.7 1 1 1 2 2 2 0 P-11 zinc finger zf-C3HC4_3 PF13920.1 gi|325968643|ref|YP_004244835.1| - 0.1 12.2 0.9 0.18 11.5 0.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-RING_4 PF14570.1 gi|325968643|ref|YP_004244835.1| - 0.11 12.1 1.6 0.17 11.4 1.1 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Prim_Zn_Ribbon PF08273.7 gi|325968643|ref|YP_004244835.1| - 0.2 11.7 4.5 0.93 9.6 1.0 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-FPG_IleRS PF06827.9 gi|325968643|ref|YP_004244835.1| - 0.37 10.4 3.8 1.4 8.6 0.2 2.3 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.5 gi|325968643|ref|YP_004244835.1| - 0.4 10.6 2.7 2.2 8.3 1.8 2.0 1 1 1 2 2 2 0 Zinc ribbon domain RRN7 PF11781.3 gi|325968643|ref|YP_004244835.1| - 0.43 10.1 3.3 0.7 9.4 0.1 2.3 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 RNA_POL_M_15KD PF02150.11 gi|325968643|ref|YP_004244835.1| - 1.3 8.7 3.6 0.61 9.8 0.3 1.9 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_S24e PF01282.14 gi|325968644|ref|YP_004244836.1| - 7.2e-19 67.3 0.8 1.8e-18 66.0 0.6 1.8 1 1 0 1 1 1 1 Ribosomal protein S24e HTH_40 PF14493.1 gi|325968644|ref|YP_004244836.1| - 0.072 13.3 0.8 0.12 12.5 0.6 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|325968644|ref|YP_004244836.1| - 0.085 12.5 0.1 1.7 8.3 0.1 2.6 1 1 0 1 1 1 0 Homeodomain-like domain T2SE_Nter PF05157.10 gi|325968644|ref|YP_004244836.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain DUF1254 PF06863.7 gi|325968645|ref|YP_004244837.1| - 0.039 13.7 0.1 0.054 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1254) B12-binding PF02310.14 gi|325968646|ref|YP_004244838.1| - 1.3e-30 105.7 0.0 8.9e-30 103.0 0.0 2.2 2 1 1 3 3 3 1 B12 binding domain Radical_SAM PF04055.16 gi|325968646|ref|YP_004244838.1| - 1.9e-26 93.1 0.1 3.2e-25 89.2 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|325968646|ref|YP_004244838.1| - 0.00032 20.8 0.1 0.00075 19.6 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|325968646|ref|YP_004244838.1| - 0.00033 20.6 0.0 0.0011 18.9 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain Peripla_BP_6 PF13458.1 gi|325968646|ref|YP_004244838.1| - 0.029 13.7 0.0 0.071 12.4 0.0 1.7 1 0 0 1 1 1 0 Periplasmic binding protein Radical_SAM_N PF08497.5 gi|325968646|ref|YP_004244838.1| - 0.095 11.6 0.0 10 4.9 0.0 2.6 2 0 0 2 2 2 0 Radical SAM N-terminal Radical_SAM PF04055.16 gi|325968647|ref|YP_004244839.1| - 4.5e-24 85.5 0.0 3.1e-23 82.7 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.1 gi|325968647|ref|YP_004244839.1| - 1.3e-08 35.0 0.1 6.4e-08 32.8 0.0 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|325968647|ref|YP_004244839.1| - 6.2e-08 32.8 0.0 1.9e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|325968647|ref|YP_004244839.1| - 2.8e-07 30.5 0.0 6.6e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|325968647|ref|YP_004244839.1| - 0.0021 17.3 0.0 0.005 16.1 0.0 1.6 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_22 PF13309.1 gi|325968647|ref|YP_004244839.1| - 0.13 11.9 0.0 0.38 10.5 0.0 1.7 1 0 0 1 1 1 0 HTH domain HMGL-like PF00682.14 gi|325968647|ref|YP_004244839.1| - 0.18 11.4 0.0 0.65 9.6 0.0 1.9 1 1 1 2 2 2 0 HMGL-like DAO PF01266.19 gi|325968648|ref|YP_004244840.1| - 6.7e-16 58.1 4.2 2.1e-08 33.4 0.2 2.8 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|325968648|ref|YP_004244840.1| - 8e-12 44.7 1.4 4.4e-08 32.4 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|325968648|ref|YP_004244840.1| - 1.5e-11 43.4 0.5 5.7e-11 41.5 0.3 1.8 1 1 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|325968648|ref|YP_004244840.1| - 4.6e-11 42.2 0.8 7.5e-10 38.2 0.0 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|325968648|ref|YP_004244840.1| - 1.3e-10 41.4 0.0 2.1e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|325968648|ref|YP_004244840.1| - 5.1e-09 35.6 0.0 7.5e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|325968648|ref|YP_004244840.1| - 7e-09 35.5 0.1 1.9e-08 34.1 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|325968648|ref|YP_004244840.1| - 6.3e-08 32.9 0.0 1.1e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|325968648|ref|YP_004244840.1| - 1.2e-07 31.1 0.1 1.7e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|325968648|ref|YP_004244840.1| - 2.6e-06 26.6 0.1 3.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|325968648|ref|YP_004244840.1| - 2.8e-06 27.1 0.2 6.3e-06 26.0 0.1 1.6 1 1 0 1 1 1 1 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|325968648|ref|YP_004244840.1| - 4.1e-06 25.6 0.1 0.006 15.2 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|325968648|ref|YP_004244840.1| - 5.8e-06 25.4 0.5 0.00013 20.9 0.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|325968648|ref|YP_004244840.1| - 1.3e-05 25.5 0.3 7.7e-05 23.0 0.1 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|325968648|ref|YP_004244840.1| - 4.6e-05 22.6 0.1 0.00014 21.1 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GMC_oxred_N PF00732.14 gi|325968648|ref|YP_004244840.1| - 0.0004 19.6 0.0 0.06 12.4 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase NAD_binding_7 PF13241.1 gi|325968648|ref|YP_004244840.1| - 0.0057 16.8 0.0 0.017 15.3 0.0 1.8 2 0 0 2 2 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|325968648|ref|YP_004244840.1| - 0.059 13.3 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.13 gi|325968648|ref|YP_004244840.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_11 PF13247.1 gi|325968649|ref|YP_004244841.1| - 5.9e-08 32.5 4.4 7.6e-08 32.1 3.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968649|ref|YP_004244841.1| - 1e-06 28.9 33.0 0.00095 19.5 9.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325968649|ref|YP_004244841.1| - 2.9e-06 26.8 12.0 0.0012 18.6 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325968649|ref|YP_004244841.1| - 1.5e-05 24.7 14.6 2.8e-05 23.8 10.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968649|ref|YP_004244841.1| - 0.00046 20.4 13.8 0.00097 19.3 9.6 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968649|ref|YP_004244841.1| - 0.00047 20.4 6.3 0.0068 16.7 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|325968649|ref|YP_004244841.1| - 0.0006 19.6 10.9 0.0012 18.6 7.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968649|ref|YP_004244841.1| - 0.0006 19.3 2.0 0.0006 19.3 1.4 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|325968649|ref|YP_004244841.1| - 0.0048 17.1 1.2 0.0048 17.1 0.8 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|325968649|ref|YP_004244841.1| - 0.039 13.9 3.1 0.039 13.9 2.1 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325968649|ref|YP_004244841.1| - 0.051 13.4 18.7 0.08 12.8 2.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|325968649|ref|YP_004244841.1| - 0.082 13.5 4.3 0.082 13.5 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain RLI PF04068.10 gi|325968649|ref|YP_004244841.1| - 0.29 10.7 7.9 0.66 9.6 5.5 1.6 1 1 0 1 1 1 0 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_16 PF13484.1 gi|325968649|ref|YP_004244841.1| - 2 9.1 14.5 0.21 12.3 1.3 2.4 1 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|325968649|ref|YP_004244841.1| - 2.1 8.7 11.3 0.24 11.8 1.4 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain ETF PF01012.16 gi|325968650|ref|YP_004244842.1| - 7e-29 100.6 0.0 9.3e-29 100.2 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Usp PF00582.21 gi|325968650|ref|YP_004244842.1| - 0.074 13.2 0.0 0.21 11.8 0.0 1.7 2 0 0 2 2 2 0 Universal stress protein family ETF PF01012.16 gi|325968651|ref|YP_004244843.1| - 4.3e-42 143.6 0.0 7.3e-42 142.8 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|325968651|ref|YP_004244843.1| - 7.1e-33 112.0 2.0 8.8e-33 111.7 0.5 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.17 gi|325968651|ref|YP_004244843.1| - 0.022 14.5 0.4 0.81 9.4 0.2 2.8 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DFP PF04127.10 gi|325968652|ref|YP_004244844.1| - 9.6e-41 139.4 0.0 3.4e-40 137.6 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|325968652|ref|YP_004244844.1| - 3.7e-26 91.3 0.2 6.6e-26 90.5 0.2 1.4 1 0 0 1 1 1 1 Flavoprotein Antitoxin-MazE PF04014.13 gi|325968653|ref|YP_004244845.1| - 2.2e-06 27.2 0.0 0.00086 18.9 0.0 2.5 2 0 0 2 2 2 2 Antidote-toxin recognition MazE DUF1626 PF07788.6 gi|325968654|ref|YP_004244846.1| - 0.0014 18.3 0.1 0.0028 17.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) CCP_MauG PF03150.9 gi|325968654|ref|YP_004244846.1| - 0.036 14.3 0.1 0.055 13.7 0.1 1.3 1 0 0 1 1 1 0 Di-haem cytochrome c peroxidase DUF1626 PF07788.6 gi|325968655|ref|YP_004244847.1| - 1.1e-16 60.4 0.1 1.3e-16 60.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) Hjc PF01870.13 gi|325968655|ref|YP_004244847.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) IncA PF04156.9 gi|325968656|ref|YP_004244848.1| - 1.4e-08 34.5 0.1 1.7e-08 34.3 0.1 1.0 1 0 0 1 1 1 1 IncA protein DUF2232 PF09991.4 gi|325968656|ref|YP_004244848.1| - 0.0017 17.4 3.1 0.005 15.8 2.2 1.6 1 1 0 1 1 1 1 Predicted membrane protein (DUF2232) DUF2254 PF10011.4 gi|325968656|ref|YP_004244848.1| - 0.0026 16.2 2.4 0.0049 15.3 1.7 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2254) SHR3_chaperone PF08229.6 gi|325968656|ref|YP_004244848.1| - 0.0053 15.7 0.1 0.007 15.3 0.0 1.2 1 0 0 1 1 1 1 ER membrane protein SH3 Cytochrom_B_C PF00032.12 gi|325968656|ref|YP_004244848.1| - 0.012 15.8 0.5 0.016 15.4 0.4 1.1 1 0 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD PIG-P PF08510.7 gi|325968656|ref|YP_004244848.1| - 0.013 15.1 2.5 0.037 13.6 0.0 2.0 1 1 1 2 2 2 0 PIG-P DUF2208 PF09973.4 gi|325968656|ref|YP_004244848.1| - 0.028 13.6 0.5 0.035 13.3 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) Orbi_VP5 PF00901.12 gi|325968656|ref|YP_004244848.1| - 0.028 12.6 2.0 0.032 12.4 1.4 1.0 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP5 OppC_N PF12911.2 gi|325968656|ref|YP_004244848.1| - 0.03 13.6 5.8 0.045 13.1 0.7 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF412 PF04217.8 gi|325968656|ref|YP_004244848.1| - 0.031 14.0 0.2 0.038 13.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function, DUF412 Wzy_C PF04932.10 gi|325968656|ref|YP_004244848.1| - 0.043 13.6 0.0 0.05 13.3 0.0 1.1 1 0 0 1 1 1 0 O-Antigen ligase T2SM PF04612.7 gi|325968656|ref|YP_004244848.1| - 0.094 12.5 4.6 0.18 11.5 0.1 2.0 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M DUF1510 PF07423.6 gi|325968656|ref|YP_004244848.1| - 0.34 10.2 7.6 1.2 8.4 5.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1510) DUF3007 PF11460.3 gi|325968656|ref|YP_004244848.1| - 1 9.4 7.1 2.3 8.3 4.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3007) 7TM_GPCR_Srx PF10328.4 gi|325968656|ref|YP_004244848.1| - 1.1 8.3 5.8 1.9 7.5 4.0 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srx DUF3987 PF13148.1 gi|325968656|ref|YP_004244848.1| - 1.2 7.6 5.4 1.5 7.2 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) DUF485 PF04341.7 gi|325968656|ref|YP_004244848.1| - 1.4 8.7 5.8 2.6 7.8 4.0 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF485 DUF417 PF04224.7 gi|325968656|ref|YP_004244848.1| - 2.3 7.5 7.6 19 4.5 5.3 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF417 DUF106 PF01956.11 gi|325968656|ref|YP_004244848.1| - 4.2 6.8 7.1 0.46 9.9 1.5 1.8 1 1 1 2 2 2 0 Integral membrane protein DUF106 PQQ_2 PF13360.1 gi|325968658|ref|YP_004244850.1| - 1.5e-11 44.2 13.0 1.9e-07 30.8 3.3 2.8 2 1 1 3 3 3 2 PQQ-like domain PQQ PF01011.16 gi|325968658|ref|YP_004244850.1| - 8.8e-11 40.7 8.2 0.57 9.8 0.0 6.3 5 1 1 6 6 6 4 PQQ enzyme repeat WD40 PF00400.27 gi|325968658|ref|YP_004244850.1| - 0.00033 20.4 5.1 5.4 7.0 0.0 5.7 6 1 0 6 6 6 2 WD domain, G-beta repeat PQQ_3 PF13570.1 gi|325968658|ref|YP_004244850.1| - 0.00033 20.8 26.4 3.8 7.9 0.1 8.3 7 1 0 7 7 7 3 PQQ-like domain PD40 PF07676.7 gi|325968658|ref|YP_004244850.1| - 0.0033 17.0 0.4 2.5 7.8 0.0 3.6 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat DUF3639 PF12341.3 gi|325968658|ref|YP_004244850.1| - 0.032 14.2 0.5 0.14 12.1 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3639) Alpha-amylase_C PF02806.13 gi|325968659|ref|YP_004244851.1| - 0.11 12.6 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain SHP PF03579.8 gi|325968659|ref|YP_004244851.1| - 0.36 10.2 2.5 0.81 9.0 1.8 1.5 1 0 0 1 1 1 0 Small hydrophobic protein Acetyltransf_1 PF00583.19 gi|325968660|ref|YP_004244852.1| - 2.5e-07 30.5 0.0 2.6e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|325968660|ref|YP_004244852.1| - 5.1e-06 26.5 0.0 5.4e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|325968660|ref|YP_004244852.1| - 3.1e-05 23.7 0.0 3.6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|325968660|ref|YP_004244852.1| - 0.00083 19.5 0.0 0.0009 19.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|325968660|ref|YP_004244852.1| - 0.0012 18.5 0.0 0.0012 18.5 0.0 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|325968660|ref|YP_004244852.1| - 0.01 15.9 0.0 0.01 15.9 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HALZ PF02183.13 gi|325968662|ref|YP_004244854.1| - 1.3e-07 31.1 10.5 0.0033 17.0 1.2 3.2 1 1 2 3 3 3 3 Homeobox associated leucine zipper Spc7 PF08317.6 gi|325968662|ref|YP_004244854.1| - 0.0015 17.2 0.2 0.0023 16.6 0.1 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein GAS PF13851.1 gi|325968662|ref|YP_004244854.1| - 0.0026 16.9 1.7 0.0048 16.1 1.2 1.4 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding IncA PF04156.9 gi|325968662|ref|YP_004244854.1| - 0.0066 16.0 1.2 0.0066 16.0 0.8 2.0 1 1 1 2 2 2 1 IncA protein DUF904 PF06005.7 gi|325968662|ref|YP_004244854.1| - 0.0071 16.6 1.0 0.012 15.8 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF904) Reo_sigmaC PF04582.7 gi|325968662|ref|YP_004244854.1| - 0.011 14.9 0.2 0.015 14.4 0.2 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Prefoldin_2 PF01920.15 gi|325968662|ref|YP_004244854.1| - 0.014 15.1 0.3 0.029 14.1 0.1 1.5 1 1 0 1 1 1 0 Prefoldin subunit Syntaxin_2 PF14523.1 gi|325968662|ref|YP_004244854.1| - 0.017 15.1 1.4 0.029 14.3 0.9 1.4 1 0 0 1 1 1 0 Syntaxin-like protein Tropomyosin_1 PF12718.2 gi|325968662|ref|YP_004244854.1| - 0.023 14.5 0.2 0.028 14.2 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin like Mod_r PF07200.8 gi|325968662|ref|YP_004244854.1| - 0.024 14.5 1.7 0.034 14.0 1.2 1.2 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF342 PF03961.8 gi|325968662|ref|YP_004244854.1| - 0.027 12.9 0.1 0.037 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) APG6 PF04111.7 gi|325968662|ref|YP_004244854.1| - 0.03 13.3 1.4 0.044 12.8 1.0 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 ATG16 PF08614.6 gi|325968662|ref|YP_004244854.1| - 0.04 13.7 0.1 0.057 13.2 0.1 1.1 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) FliD_N PF02465.13 gi|325968662|ref|YP_004244854.1| - 0.044 14.1 6.9 0.26 11.6 4.8 2.2 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus Jnk-SapK_ap_N PF09744.4 gi|325968662|ref|YP_004244854.1| - 0.045 13.7 1.1 0.082 12.8 0.7 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 TLE_N PF03920.10 gi|325968662|ref|YP_004244854.1| - 0.076 12.8 1.5 0.24 11.2 0.4 2.1 1 1 1 2 2 2 0 Groucho/TLE N-terminal Q-rich domain Filament PF00038.16 gi|325968662|ref|YP_004244854.1| - 0.093 12.1 1.5 0.12 11.7 1.0 1.1 1 0 0 1 1 1 0 Intermediate filament protein FtsL PF04999.8 gi|325968662|ref|YP_004244854.1| - 0.098 12.3 1.6 0.55 9.9 0.0 2.2 1 1 1 2 2 2 0 Cell division protein FtsL BLOC1_2 PF10046.4 gi|325968662|ref|YP_004244854.1| - 0.11 12.6 5.2 0.21 11.7 3.6 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliD_C PF07195.7 gi|325968662|ref|YP_004244854.1| - 0.13 11.5 5.3 0.2 10.9 3.7 1.3 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Cep57_MT_bd PF06657.8 gi|325968662|ref|YP_004244854.1| - 0.13 12.2 1.1 0.27 11.2 0.3 1.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Laminin_I PF06008.9 gi|325968662|ref|YP_004244854.1| - 0.18 11.0 2.8 0.25 10.6 2.0 1.1 1 0 0 1 1 1 0 Laminin Domain I DivIC PF04977.10 gi|325968662|ref|YP_004244854.1| - 0.2 11.1 1.8 0.69 9.4 0.5 2.0 1 1 1 2 2 2 0 Septum formation initiator Cep57_CLD_2 PF14197.1 gi|325968662|ref|YP_004244854.1| - 0.27 11.1 1.5 0.26 11.2 0.3 1.5 2 0 0 2 2 1 0 Centrosome localisation domain of PPC89 T4SS PF07996.6 gi|325968662|ref|YP_004244854.1| - 0.29 10.9 6.4 0.49 10.2 3.6 1.7 1 1 1 2 2 2 0 Type IV secretion system proteins FliJ PF02050.11 gi|325968662|ref|YP_004244854.1| - 0.34 10.9 1.7 0.51 10.4 1.2 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein FadA PF09403.5 gi|325968662|ref|YP_004244854.1| - 0.37 10.8 2.9 0.73 9.8 2.0 1.4 1 1 0 1 1 1 0 Adhesion protein FadA DUF972 PF06156.8 gi|325968662|ref|YP_004244854.1| - 0.52 10.6 2.6 0.83 10.0 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) bZIP_1 PF00170.16 gi|325968662|ref|YP_004244854.1| - 0.54 10.2 2.3 9.3 6.2 0.1 2.2 1 1 1 2 2 2 0 bZIP transcription factor V-ATPase_C PF03223.10 gi|325968662|ref|YP_004244854.1| - 2.1 7.1 6.1 6.6 5.5 4.2 1.7 1 1 0 1 1 1 0 V-ATPase subunit C DUF1033 PF06279.6 gi|325968662|ref|YP_004244854.1| - 2.8 7.7 5.5 6.1 6.6 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1033) DUF4407 PF14362.1 gi|325968662|ref|YP_004244854.1| - 5.4 5.8 7.1 0.47 9.3 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF3268 PF11672.3 gi|325968664|ref|YP_004244856.1| - 0.0014 18.6 0.9 0.0017 18.3 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3268) Zn_Tnp_IS1595 PF12760.2 gi|325968664|ref|YP_004244856.1| - 0.0041 16.8 4.6 0.0069 16.1 3.2 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain DUF164 PF02591.10 gi|325968664|ref|YP_004244856.1| - 0.0042 16.8 0.8 1.2 8.9 0.1 2.2 2 0 0 2 2 2 2 Putative zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|325968664|ref|YP_004244856.1| - 0.022 14.2 1.9 0.15 11.6 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|325968664|ref|YP_004244856.1| - 0.027 14.7 0.3 4.4 7.8 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPXG PF14255.1 gi|325968664|ref|YP_004244856.1| - 0.05 13.4 0.4 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-C2H2 PF00096.21 gi|325968664|ref|YP_004244856.1| - 0.051 13.9 3.1 4.8 7.7 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Terminase_GpA PF05876.7 gi|325968664|ref|YP_004244856.1| - 0.06 11.6 0.1 0.068 11.5 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-IS66 PF13005.2 gi|325968664|ref|YP_004244856.1| - 0.07 13.1 1.5 4.4 7.3 0.2 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Churchill PF06573.6 gi|325968664|ref|YP_004244856.1| - 0.073 13.0 0.0 0.082 12.9 0.0 1.1 1 0 0 1 1 1 0 Churchill protein Zn-ribbon_8 PF09723.5 gi|325968664|ref|YP_004244856.1| - 0.073 13.0 0.8 7.2 6.6 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|325968664|ref|YP_004244856.1| - 0.086 13.1 2.9 0.13 12.5 2.0 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Mu-like_Com PF10122.4 gi|325968664|ref|YP_004244856.1| - 0.094 11.7 0.3 1.4 8.0 0.1 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-C2HC_2 PF13913.1 gi|325968664|ref|YP_004244856.1| - 0.099 12.3 8.1 1.6 8.4 0.6 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Sgf11 PF08209.6 gi|325968664|ref|YP_004244856.1| - 0.12 11.6 4.9 2 7.7 0.5 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Imm10 PF15562.1 gi|325968664|ref|YP_004244856.1| - 0.14 11.9 0.8 0.89 9.3 0.6 1.9 2 0 0 2 2 2 0 Immunity protein 10 Desulfoferrod_N PF06397.7 gi|325968664|ref|YP_004244856.1| - 0.36 10.2 2.5 1.1 8.6 0.3 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-H2C2_2 PF13465.1 gi|325968664|ref|YP_004244856.1| - 0.64 10.4 3.2 19 5.8 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|325968664|ref|YP_004244856.1| - 0.87 8.8 3.4 1.6 8.0 0.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-FCS PF06467.9 gi|325968664|ref|YP_004244856.1| - 1 9.0 3.4 12 5.6 0.1 2.3 1 1 1 2 2 2 0 MYM-type Zinc finger with FCS sequence motif MR_MLE PF01188.16 gi|325968665|ref|YP_004244857.1| - 1.7e-13 50.8 0.0 3.7e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|325968665|ref|YP_004244857.1| - 5.8e-13 48.7 0.0 9.9e-13 48.0 0.0 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|325968665|ref|YP_004244857.1| - 2.6e-11 43.5 0.0 4.5e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GD_AH_C PF04295.8 gi|325968666|ref|YP_004244858.1| - 1.6e-124 415.5 0.0 1.9e-124 415.3 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus WHEP-TRS PF00458.15 gi|325968666|ref|YP_004244858.1| - 0.00036 20.1 0.1 0.0011 18.6 0.0 1.7 1 0 0 1 1 1 1 WHEP-TRS domain SAF PF08666.7 gi|325968667|ref|YP_004244859.1| - 5.6e-15 55.4 1.2 7.2e-15 55.1 0.9 1.2 1 0 0 1 1 1 1 SAF domain DUF2190 PF09956.4 gi|325968667|ref|YP_004244859.1| - 0.00037 20.2 0.1 0.03 14.0 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2190) PT-HINT PF07591.6 gi|325968667|ref|YP_004244859.1| - 0.0066 16.3 0.8 8.1 6.3 0.0 3.0 1 1 2 3 3 3 2 Pretoxin HINT domain FCD PF07729.7 gi|325968668|ref|YP_004244860.1| - 2.6e-28 98.8 1.7 2.6e-28 98.8 1.2 1.6 2 0 0 2 2 2 1 FCD domain GntR PF00392.16 gi|325968668|ref|YP_004244860.1| - 1.3e-17 62.9 0.9 3.3e-17 61.6 0.6 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|325968668|ref|YP_004244860.1| - 9.1e-05 22.0 0.1 0.00023 20.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|325968668|ref|YP_004244860.1| - 0.00018 21.2 0.0 0.00042 20.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|325968668|ref|YP_004244860.1| - 0.0002 20.6 0.0 0.00048 19.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|325968668|ref|YP_004244860.1| - 0.00032 20.9 0.1 0.0014 18.9 0.0 2.1 1 1 1 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|325968668|ref|YP_004244860.1| - 0.00036 20.4 0.0 0.00068 19.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|325968668|ref|YP_004244860.1| - 0.0012 18.4 0.1 0.003 17.1 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.1 gi|325968668|ref|YP_004244860.1| - 0.0036 17.4 0.6 0.013 15.5 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn helix MarR_2 PF12802.2 gi|325968668|ref|YP_004244860.1| - 0.008 15.8 0.3 0.025 14.2 0.2 1.8 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|325968668|ref|YP_004244860.1| - 0.012 15.1 0.5 0.033 13.7 0.3 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|325968668|ref|YP_004244860.1| - 0.015 14.9 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family PaaX PF07848.7 gi|325968668|ref|YP_004244860.1| - 0.039 13.9 0.6 1.3 9.0 0.1 2.5 2 0 0 2 2 2 0 PaaX-like protein HTH_28 PF13518.1 gi|325968668|ref|YP_004244860.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|325968668|ref|YP_004244860.1| - 0.071 12.6 0.4 0.25 10.8 0.0 2.1 2 1 0 2 2 2 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|325968668|ref|YP_004244860.1| - 0.12 12.5 0.0 0.33 11.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator MDMPI_N PF11716.3 gi|325968668|ref|YP_004244860.1| - 0.7 10.3 5.3 1.5 9.2 0.1 2.4 2 1 1 3 3 2 0 Mycothiol maleylpyruvate isomerase N-terminal domain Sugar_tr PF00083.19 gi|325968669|ref|YP_004244861.1| - 7.4e-19 67.6 46.2 4.7e-14 51.8 11.7 2.8 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|325968669|ref|YP_004244861.1| - 3e-14 52.5 59.9 3e-14 52.5 41.5 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily Amidohydro_3 PF07969.6 gi|325968671|ref|YP_004244863.1| - 1.2e-47 162.9 0.0 1.5e-47 162.7 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|325968671|ref|YP_004244863.1| - 1.4e-08 34.8 1.5 9.3e-05 22.2 0.0 3.1 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|325968671|ref|YP_004244863.1| - 4.7e-06 26.3 0.1 5.5e-05 22.9 0.0 2.5 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|325968671|ref|YP_004244863.1| - 0.00059 19.9 0.0 0.66 9.9 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase Peptidase_M20 PF01546.23 gi|325968672|ref|YP_004244864.1| - 3.5e-26 91.8 0.0 4.4e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|325968672|ref|YP_004244864.1| - 0.00019 21.2 0.0 0.00031 20.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.9 gi|325968672|ref|YP_004244864.1| - 0.0011 18.6 0.0 0.0027 17.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.9 gi|325968672|ref|YP_004244864.1| - 0.076 11.7 0.0 3.1 6.4 0.0 2.4 2 1 0 2 2 2 0 M42 glutamyl aminopeptidase Sugar_tr PF00083.19 gi|325968673|ref|YP_004244865.1| - 5.7e-20 71.3 26.9 3.2e-16 58.9 5.2 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|325968673|ref|YP_004244865.1| - 8.4e-19 67.4 48.7 2e-11 43.2 14.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily AA_permease PF00324.16 gi|325968674|ref|YP_004244866.1| - 2.4e-26 92.1 43.5 3.1e-26 91.7 30.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|325968674|ref|YP_004244866.1| - 1.6e-22 79.6 51.0 2.4e-22 79.0 35.4 1.2 1 0 0 1 1 1 1 Amino acid permease DUF4006 PF13179.1 gi|325968674|ref|YP_004244866.1| - 0.073 12.6 0.1 0.51 9.9 0.1 2.5 1 0 0 1 1 1 0 Family of unknown function (DUF4006) TcdA_TcdB_pore PF12920.2 gi|325968674|ref|YP_004244866.1| - 3.8 5.3 3.8 5.9 4.6 2.6 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain FmdA_AmdA PF03069.10 gi|325968675|ref|YP_004244867.1| - 2.5e-51 174.5 0.1 5e-25 87.9 0.1 2.6 1 1 1 2 2 2 2 Acetamidase/Formamidase family RBD PF02196.10 gi|325968675|ref|YP_004244867.1| - 0.02 14.6 0.0 10 5.9 0.0 2.7 2 0 0 2 2 2 0 Raf-like Ras-binding domain DUF2111 PF09884.4 gi|325968675|ref|YP_004244867.1| - 0.038 13.8 0.1 0.14 11.9 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2111) 2-oxoacid_dh PF00198.18 gi|325968676|ref|YP_004244868.1| - 3.9e-32 111.3 0.0 6.8e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OsmC PF02566.14 gi|325968676|ref|YP_004244868.1| - 3.6e-23 81.6 0.0 6.8e-23 80.7 0.0 1.4 1 0 0 1 1 1 1 OsmC-like protein CAT PF00302.13 gi|325968676|ref|YP_004244868.1| - 0.00049 19.7 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Chloramphenicol acetyltransferase MFS_1 PF07690.11 gi|325968677|ref|YP_004244869.1| - 1.2e-21 76.8 44.0 8.1e-18 64.2 24.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|325968677|ref|YP_004244869.1| - 1.1e-07 30.5 25.3 0.0009 17.7 12.9 2.8 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|325968677|ref|YP_004244869.1| - 0.0028 17.3 0.0 0.0028 17.3 0.0 4.1 4 1 1 5 5 5 1 MFS_1 like family Sugar_tr PF00083.19 gi|325968677|ref|YP_004244869.1| - 0.58 8.6 24.3 0.42 9.1 0.6 3.6 1 1 2 4 4 4 0 Sugar (and other) transporter AFOR_C PF01314.13 gi|325968678|ref|YP_004244870.1| - 2.3e-107 359.0 0.0 2.8e-107 358.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|325968678|ref|YP_004244870.1| - 2.9e-70 235.7 0.1 5.1e-70 234.9 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain GTP_EFTU_D2 PF03144.20 gi|325968679|ref|YP_004244871.1| - 0.075 13.1 0.1 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 2 CoA_trans PF01144.18 gi|325968680|ref|YP_004244872.1| - 1.1e-28 99.8 0.1 4.5e-23 81.5 0.0 3.4 2 1 0 2 2 2 2 Coenzyme A transferase Abhydrolase_6 PF12697.2 gi|325968681|ref|YP_004244873.1| - 7.9e-13 48.8 0.1 1.2e-12 48.1 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|325968681|ref|YP_004244873.1| - 9.3e-12 44.9 0.0 1.4e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|325968681|ref|YP_004244873.1| - 2.6e-07 29.4 0.0 0.00024 19.7 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.13 gi|325968681|ref|YP_004244873.1| - 3.1e-07 30.0 0.1 5.2e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.3 gi|325968681|ref|YP_004244873.1| - 7.2e-07 28.9 0.0 1.4e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Putative lysophospholipase DLH PF01738.13 gi|325968681|ref|YP_004244873.1| - 3e-05 23.4 0.0 0.0076 15.5 0.0 2.3 2 0 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|325968681|ref|YP_004244873.1| - 0.00014 21.1 0.1 0.0003 20.0 0.1 1.5 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|325968681|ref|YP_004244873.1| - 0.0002 21.0 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|325968681|ref|YP_004244873.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal PGAP1 PF07819.8 gi|325968681|ref|YP_004244873.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein Esterase PF00756.15 gi|325968681|ref|YP_004244873.1| - 0.14 11.5 0.4 0.66 9.3 0.2 1.9 1 1 0 1 1 1 0 Putative esterase DUF2974 PF11187.3 gi|325968681|ref|YP_004244873.1| - 0.18 11.1 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Aldedh PF00171.17 gi|325968682|ref|YP_004244874.1| - 4.7e-156 519.7 0.0 5.3e-156 519.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family GYD PF08734.6 gi|325968682|ref|YP_004244874.1| - 0.073 12.7 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 GYD domain Aminotran_3 PF00202.16 gi|325968683|ref|YP_004244875.1| - 1.3e-95 320.1 0.0 1.5e-95 319.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|325968683|ref|YP_004244875.1| - 0.2 10.5 0.0 0.31 9.9 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II Spermine_synth PF01564.12 gi|325968684|ref|YP_004244876.1| - 1.1e-67 227.5 0.0 1.4e-67 227.2 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|325968684|ref|YP_004244876.1| - 1.5e-06 28.7 0.0 2.6e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|325968684|ref|YP_004244876.1| - 0.00021 20.9 0.0 0.00038 20.1 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|325968684|ref|YP_004244876.1| - 0.00028 20.8 0.0 0.00053 20.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968684|ref|YP_004244876.1| - 0.00045 19.8 0.0 0.00068 19.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|325968684|ref|YP_004244876.1| - 0.0012 19.3 0.0 0.002 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|325968684|ref|YP_004244876.1| - 0.0017 17.7 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DUF43 PF01861.11 gi|325968684|ref|YP_004244876.1| - 0.02 13.9 0.1 0.031 13.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF43 Methyltransf_11 PF08241.7 gi|325968684|ref|YP_004244876.1| - 0.12 12.9 0.0 0.24 11.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|325968684|ref|YP_004244876.1| - 0.13 11.5 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Aminotran_3 PF00202.16 gi|325968685|ref|YP_004244877.1| - 6.6e-59 199.4 0.0 9.8e-59 198.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III DUF3347 PF11827.3 gi|325968685|ref|YP_004244877.1| - 0.2 11.6 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) Arginase PF00491.16 gi|325968686|ref|YP_004244878.1| - 2.5e-77 259.9 0.0 3.1e-77 259.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family AA_permease_2 PF13520.1 gi|325968687|ref|YP_004244879.1| - 2e-36 125.4 71.1 2.4e-36 125.1 49.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|325968687|ref|YP_004244879.1| - 2.3e-06 26.2 58.5 4.4e-06 25.3 40.6 1.4 1 1 0 1 1 1 1 Amino acid permease DAO PF01266.19 gi|325968688|ref|YP_004244880.1| - 4.8e-16 58.6 0.0 6.2e-16 58.2 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase GGGtGRT PF14057.1 gi|325968688|ref|YP_004244880.1| - 0.018 13.9 0.1 1.2 7.8 0.0 2.1 1 1 1 2 2 2 0 GGGtGRT protein RSV_NS2 PF03113.9 gi|325968688|ref|YP_004244880.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Respiratory synctial virus non-structural protein NS2 Saccharop_dh PF03435.13 gi|325968689|ref|YP_004244881.1| - 7.5e-27 94.2 0.0 1.3e-25 90.2 0.0 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|325968689|ref|YP_004244881.1| - 4.8e-07 29.9 0.0 7.3e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|325968689|ref|YP_004244881.1| - 2.1e-06 27.3 0.1 3.5e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|325968689|ref|YP_004244881.1| - 0.00072 18.3 0.1 0.0011 17.7 0.1 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Semialdhyde_dh PF01118.19 gi|325968689|ref|YP_004244881.1| - 0.019 15.2 0.0 0.039 14.2 0.0 1.6 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|325968689|ref|YP_004244881.1| - 0.059 12.2 0.0 0.085 11.7 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain K_oxygenase PF13434.1 gi|325968689|ref|YP_004244881.1| - 0.073 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_4 PF07993.7 gi|325968689|ref|YP_004244881.1| - 0.12 11.3 0.0 0.23 10.3 0.0 1.5 1 0 0 1 1 1 0 Male sterility protein TrkA_N PF02254.13 gi|325968689|ref|YP_004244881.1| - 0.13 12.2 0.2 0.3 11.1 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Imm15 PF15590.1 gi|325968689|ref|YP_004244881.1| - 0.15 11.2 0.1 0.49 9.5 0.0 1.8 2 0 0 2 2 2 0 Immunity protein 15 AFOR_C PF01314.13 gi|325968690|ref|YP_004244882.1| - 1e-117 393.0 0.0 1.3e-117 392.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|325968690|ref|YP_004244882.1| - 3.6e-69 232.1 0.0 5.1e-69 231.6 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AA_permease PF00324.16 gi|325968691|ref|YP_004244883.1| - 1.1e-23 83.3 49.6 1.5e-23 82.9 34.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|325968691|ref|YP_004244883.1| - 1.2e-18 66.9 54.1 1.5e-18 66.5 37.3 1.2 1 1 0 1 1 1 1 Amino acid permease Aminotran_3 PF00202.16 gi|325968692|ref|YP_004244884.1| - 1.3e-87 293.8 0.0 1.6e-87 293.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aldedh PF00171.17 gi|325968693|ref|YP_004244885.1| - 2.8e-117 391.8 0.0 3.2e-117 391.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1256 PF06866.6 gi|325968693|ref|YP_004244885.1| - 0.0011 18.2 0.0 0.0022 17.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1256) Methyltransf_23 PF13489.1 gi|325968694|ref|YP_004244886.1| - 2.4e-19 69.6 0.0 3.2e-19 69.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|325968694|ref|YP_004244886.1| - 4.2e-19 68.8 0.0 7.1e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968694|ref|YP_004244886.1| - 1.3e-11 44.3 0.0 1.9e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|325968694|ref|YP_004244886.1| - 4e-11 43.1 0.0 7.3e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325968694|ref|YP_004244886.1| - 3.9e-08 33.8 0.0 8.4e-08 32.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|325968694|ref|YP_004244886.1| - 4.5e-08 32.5 0.0 6.5e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|325968694|ref|YP_004244886.1| - 4.5e-08 33.4 0.0 8.3e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|325968694|ref|YP_004244886.1| - 2.4e-06 27.0 0.0 6.8e-06 25.5 0.0 1.6 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW FtsJ PF01728.14 gi|325968694|ref|YP_004244886.1| - 0.00021 21.3 0.0 0.00032 20.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|325968694|ref|YP_004244886.1| - 0.00043 20.3 0.0 0.00075 19.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|325968694|ref|YP_004244886.1| - 0.00057 19.1 0.0 0.00084 18.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|325968694|ref|YP_004244886.1| - 0.0063 15.9 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|325968694|ref|YP_004244886.1| - 0.025 13.6 0.0 0.037 13.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|325968694|ref|YP_004244886.1| - 0.083 12.4 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) UPF0180 PF03698.8 gi|325968694|ref|YP_004244886.1| - 0.11 12.3 0.0 29 4.5 0.0 2.8 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0180) LAGLIDADG_3 PF14528.1 gi|325968694|ref|YP_004244886.1| - 0.12 12.6 0.2 0.88 9.8 0.0 2.4 2 1 0 2 2 2 0 LAGLIDADG-like domain Metallophos_2 PF12850.2 gi|325968695|ref|YP_004244887.1| - 5.8e-05 22.9 0.0 0.00053 19.8 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|325968695|ref|YP_004244887.1| - 0.00027 20.4 3.0 0.01 15.2 0.0 2.5 2 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|325968695|ref|YP_004244887.1| - 0.17 11.0 1.0 7.8 5.5 0.0 2.6 3 0 0 3 3 3 0 Metallophosphoesterase, calcineurin superfamily NTP_transf_5 PF14907.1 gi|325968696|ref|YP_004244888.1| - 5.5e-05 22.6 0.0 8.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF996 PF06195.8 gi|325968697|ref|YP_004244889.1| - 1.5e-25 89.8 25.1 1.7e-25 89.6 14.5 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF996) DUF308 PF03729.8 gi|325968697|ref|YP_004244889.1| - 0.0023 17.8 38.6 0.0025 17.7 3.4 3.4 2 1 1 3 3 3 2 Short repeat of unknown function (DUF308) DUF2065 PF09838.4 gi|325968697|ref|YP_004244889.1| - 0.0043 16.7 0.4 0.0043 16.7 0.3 3.4 3 2 1 4 4 4 1 Uncharacterized protein conserved in bacteria (DUF2065) Claudin_2 PF13903.1 gi|325968697|ref|YP_004244889.1| - 0.014 15.1 17.5 0.3 10.7 8.8 2.4 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction YrhK PF14145.1 gi|325968697|ref|YP_004244889.1| - 0.57 9.8 22.3 0.17 11.5 1.4 3.8 3 1 0 3 3 3 0 YrhK-like protein Claudin_3 PF06653.6 gi|325968697|ref|YP_004244889.1| - 1.8 8.2 17.3 4.3 7.0 3.9 2.4 2 0 0 2 2 2 0 Tight junction protein, Claudin-like Clc-like PF07062.7 gi|325968699|ref|YP_004244891.1| - 3.1 7.0 13.0 0.91 8.7 6.8 1.6 1 1 0 1 1 1 0 Clc-like Innexin PF00876.13 gi|325968701|ref|YP_004244893.1| - 0.19 10.8 3.3 0.28 10.2 2.3 1.2 1 0 0 1 1 1 0 Innexin DUF86 PF01934.12 gi|325968702|ref|YP_004244894.1| - 6.9e-19 67.6 0.1 8.4e-19 67.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 DNA_PPF PF02916.10 gi|325968702|ref|YP_004244894.1| - 0.063 13.3 0.1 9.9 6.2 0.0 2.2 1 1 1 2 2 2 0 DNA polymerase processivity factor Ribosomal_S30 PF04758.9 gi|325968704|ref|YP_004244896.1| - 1.1e-06 28.2 2.2 1.4e-06 27.9 1.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S30 LytR_C PF13399.1 gi|325968705|ref|YP_004244897.1| - 0.14 12.5 0.0 2.8 8.3 0.0 2.3 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Sld5 PF05916.6 gi|325968709|ref|YP_004244901.1| - 2.7e-05 24.3 0.1 3.4e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.18 gi|325968710|ref|YP_004244902.1| - 1.4e-141 471.0 0.0 2.2e-141 470.4 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|325968710|ref|YP_004244902.1| - 1e-17 64.7 0.8 3e-17 63.2 0.2 2.1 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|325968710|ref|YP_004244902.1| - 2.9e-09 36.4 0.1 3.5e-06 26.3 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|325968710|ref|YP_004244902.1| - 1.4e-07 31.1 0.0 3.3e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|325968710|ref|YP_004244902.1| - 1.6e-05 24.6 0.0 3.9e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.5 gi|325968710|ref|YP_004244902.1| - 3e-05 23.8 1.0 5.8e-05 22.9 0.7 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Sigma54_activat PF00158.21 gi|325968710|ref|YP_004244902.1| - 0.003 17.0 0.1 0.019 14.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|325968710|ref|YP_004244902.1| - 0.0072 16.5 0.1 0.052 13.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HypA PF01155.14 gi|325968710|ref|YP_004244902.1| - 0.033 13.8 0.1 0.065 12.9 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_16 PF13191.1 gi|325968710|ref|YP_004244902.1| - 0.06 13.3 2.2 0.23 11.4 0.3 3.0 3 1 0 3 3 3 0 AAA ATPase domain NTPase_1 PF03266.10 gi|325968710|ref|YP_004244902.1| - 0.069 12.8 0.5 2.6 7.7 0.2 2.6 1 1 1 2 2 2 0 NTPase zf-ribbon_3 PF13248.1 gi|325968710|ref|YP_004244902.1| - 0.099 11.8 2.1 1.4 8.2 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|325968710|ref|YP_004244902.1| - 0.11 11.8 0.6 17 4.8 0.1 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-tcix PF14952.1 gi|325968710|ref|YP_004244902.1| - 0.15 11.3 1.7 0.36 10.1 0.2 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.1 gi|325968710|ref|YP_004244902.1| - 0.23 11.0 6.4 2.6 7.6 0.2 2.2 1 1 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|325968710|ref|YP_004244902.1| - 0.51 10.1 1.8 2.9 7.7 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon RNA_POL_M_15KD PF02150.11 gi|325968710|ref|YP_004244902.1| - 1.9 8.2 3.3 1.8 8.2 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit LTV PF04180.9 gi|325968711|ref|YP_004244903.1| - 0.1 12.1 0.1 0.17 11.3 0.0 1.4 1 1 0 1 1 1 0 Low temperature viability protein Fer4_21 PF14697.1 gi|325968712|ref|YP_004244904.1| - 7.6e-11 41.7 6.3 1.1e-10 41.1 4.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968712|ref|YP_004244904.1| - 3.2e-09 36.0 16.8 1.9e-05 24.0 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325968712|ref|YP_004244904.1| - 1.8e-07 30.8 8.8 3.3e-07 30.0 6.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968712|ref|YP_004244904.1| - 2.5e-07 30.8 9.9 4.3e-07 30.0 6.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325968712|ref|YP_004244904.1| - 1.8e-06 28.6 4.2 0.0013 19.4 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|325968712|ref|YP_004244904.1| - 2.3e-06 27.1 12.7 0.0017 18.1 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|325968712|ref|YP_004244904.1| - 3.3e-06 27.3 9.6 7.4e-06 26.2 6.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968712|ref|YP_004244904.1| - 8e-06 26.1 2.1 0.097 13.0 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325968712|ref|YP_004244904.1| - 0.00013 21.6 14.9 0.043 13.7 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|325968712|ref|YP_004244904.1| - 0.00016 22.1 9.6 0.0039 17.7 0.4 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|325968712|ref|YP_004244904.1| - 0.00018 21.4 8.6 0.037 14.0 0.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968712|ref|YP_004244904.1| - 0.00047 20.5 6.0 0.093 13.1 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|325968712|ref|YP_004244904.1| - 0.00063 20.0 11.6 0.0011 19.3 0.8 3.0 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|325968712|ref|YP_004244904.1| - 0.0019 18.3 10.0 0.16 12.3 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|325968712|ref|YP_004244904.1| - 4.7 8.0 17.2 0.48 11.1 4.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.14 gi|325968713|ref|YP_004244905.1| - 3.7e-51 173.8 0.1 5.2e-51 173.3 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg TPP_enzyme_N PF02776.13 gi|325968713|ref|YP_004244905.1| - 4.7e-05 22.9 0.3 0.00011 21.7 0.2 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|325968713|ref|YP_004244905.1| - 0.00045 20.1 0.1 0.0019 18.0 0.0 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|325968714|ref|YP_004244906.1| - 1.6e-15 57.0 0.5 2.1e-15 56.6 0.4 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|325968714|ref|YP_004244906.1| - 0.0049 15.8 0.3 0.011 14.6 0.2 1.6 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Proteasome_A_N PF10584.4 gi|325968714|ref|YP_004244906.1| - 0.12 11.6 0.1 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 Proteasome subunit A N-terminal signature MFS_1 PF07690.11 gi|325968715|ref|YP_004244907.1| - 2.3e-24 85.7 61.7 1.1e-20 73.6 34.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily FAD-oxidase_C PF02913.14 gi|325968716|ref|YP_004244908.1| - 7.5e-62 208.8 0.0 1.2e-61 208.2 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|325968716|ref|YP_004244908.1| - 3.7e-40 136.6 0.5 2.6e-39 133.8 0.3 2.2 1 1 0 1 1 1 1 FAD binding domain FAD_binding_4 PF01565.18 gi|325968717|ref|YP_004244909.1| - 1e-20 73.6 0.0 1.5e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.14 gi|325968717|ref|YP_004244909.1| - 3.3e-05 23.3 0.0 8.1e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain WYL PF13280.1 gi|325968717|ref|YP_004244909.1| - 0.091 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 WYL domain CCG PF02754.11 gi|325968718|ref|YP_004244910.1| - 1.2e-21 76.5 0.0 7e-10 38.7 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|325968718|ref|YP_004244910.1| - 9.8e-12 44.7 4.8 2.3e-11 43.5 3.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968718|ref|YP_004244910.1| - 1.9e-11 44.1 4.0 1.9e-11 44.1 2.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968718|ref|YP_004244910.1| - 6.1e-11 42.5 5.0 1.5e-10 41.3 3.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968718|ref|YP_004244910.1| - 2.5e-08 33.6 2.9 0.0032 17.2 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968718|ref|YP_004244910.1| - 2.9e-06 26.6 11.3 0.0034 16.9 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325968718|ref|YP_004244910.1| - 7.9e-06 25.5 11.3 0.0044 16.8 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968718|ref|YP_004244910.1| - 0.00015 21.5 4.4 0.18 11.7 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325968718|ref|YP_004244910.1| - 0.00039 20.1 12.3 0.025 14.4 1.4 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|325968718|ref|YP_004244910.1| - 0.00095 19.3 11.2 0.098 12.9 8.7 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325968718|ref|YP_004244910.1| - 0.0028 17.8 13.4 0.34 11.3 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|325968718|ref|YP_004244910.1| - 0.0042 17.4 12.5 0.028 14.8 1.6 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325968718|ref|YP_004244910.1| - 0.012 16.3 6.7 1.6 9.5 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|325968718|ref|YP_004244910.1| - 1.1 9.9 18.2 4.8 7.9 3.6 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|325968718|ref|YP_004244910.1| - 1.2 9.7 6.1 4.8 7.8 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Lactate_perm PF02652.9 gi|325968719|ref|YP_004244911.1| - 2.5e-111 372.7 42.4 3.6e-111 372.2 29.4 1.2 1 0 0 1 1 1 1 L-lactate permease GHMP_kinases_N PF00288.21 gi|325968720|ref|YP_004244912.1| - 5e-18 64.9 0.7 2.5e-17 62.6 1.2 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|325968720|ref|YP_004244912.1| - 8.4e-08 32.3 0.0 2.8e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal DAO PF01266.19 gi|325968721|ref|YP_004244913.1| - 2.4e-20 72.7 0.0 4.4e-20 71.8 0.0 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|325968721|ref|YP_004244913.1| - 0.00061 19.7 0.1 0.0079 16.0 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|325968721|ref|YP_004244913.1| - 0.0025 16.9 0.1 0.0044 16.1 0.0 1.4 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|325968721|ref|YP_004244913.1| - 0.011 16.0 1.3 0.037 14.4 0.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|325968721|ref|YP_004244913.1| - 0.017 15.1 0.7 0.044 13.8 0.5 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DEAD PF00270.24 gi|325968722|ref|YP_004244914.1| - 2.2e-30 105.3 0.0 5.7e-30 104.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|325968722|ref|YP_004244914.1| - 1.9e-13 50.3 0.7 6.4e-13 48.6 0.5 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|325968722|ref|YP_004244914.1| - 2.1e-08 33.8 0.0 5.3e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|325968722|ref|YP_004244914.1| - 3e-06 27.1 0.0 8.2e-06 25.7 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|325968722|ref|YP_004244914.1| - 2e-05 23.5 0.1 3.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain HHH_2 PF12826.2 gi|325968722|ref|YP_004244914.1| - 3.2e-05 23.7 0.1 0.00022 21.0 0.1 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|325968722|ref|YP_004244914.1| - 0.0011 18.5 0.0 0.003 17.0 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF818 PF05677.7 gi|325968722|ref|YP_004244914.1| - 0.051 12.3 0.0 0.088 11.5 0.0 1.3 1 0 0 1 1 1 0 Chlamydia CHLPS protein (DUF818) Methyltransf_18 PF12847.2 gi|325968722|ref|YP_004244914.1| - 0.064 13.8 0.0 0.3 11.6 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain EnY2 PF10163.4 gi|325968722|ref|YP_004244914.1| - 0.2 11.5 0.9 26 4.8 0.0 3.4 3 1 1 4 4 4 0 Transcription factor e(y)2 NTP_transferase PF00483.18 gi|325968723|ref|YP_004244915.1| - 8.3e-30 103.8 0.0 9.6e-30 103.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|325968723|ref|YP_004244915.1| - 7e-06 26.2 0.0 1.2e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glycos_transf_1 PF00534.15 gi|325968724|ref|YP_004244916.1| - 5.3e-16 58.5 0.1 7e-15 54.8 0.1 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325968724|ref|YP_004244916.1| - 1.4e-11 44.7 0.0 2.1e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325968724|ref|YP_004244916.1| - 9.1e-09 35.4 0.0 1.5e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Peptidase_M20 PF01546.23 gi|325968725|ref|YP_004244917.1| - 1.1e-34 119.6 0.0 1.3e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|325968725|ref|YP_004244917.1| - 6.1e-13 48.4 0.0 7.5e-12 44.9 0.0 2.4 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|325968725|ref|YP_004244917.1| - 0.0002 21.1 0.0 0.0062 16.3 0.0 2.1 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.9 gi|325968725|ref|YP_004244917.1| - 0.00056 18.7 0.0 0.0079 14.9 0.0 2.1 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Ribosomal_L22 PF00237.14 gi|325968726|ref|YP_004244918.1| - 9.5e-29 99.4 0.0 1.2e-28 99.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Formyl_trans_C PF02911.13 gi|325968726|ref|YP_004244918.1| - 0.0073 16.3 1.2 1.7 8.7 0.1 2.5 2 1 0 2 2 2 2 Formyl transferase, C-terminal domain NAD_kinase PF01513.16 gi|325968728|ref|YP_004244920.1| - 2.7e-35 121.5 2.9 3.8e-35 121.0 2.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|325968728|ref|YP_004244920.1| - 0.0065 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain eIF-5a PF01287.15 gi|325968729|ref|YP_004244921.1| - 4.2e-14 52.2 0.1 6.8e-14 51.5 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|325968729|ref|YP_004244921.1| - 1.6e-06 27.8 0.0 3.2e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|325968729|ref|YP_004244921.1| - 0.00041 19.9 0.0 0.0014 18.2 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|325968729|ref|YP_004244921.1| - 0.0011 18.6 0.3 0.0026 17.4 0.2 1.7 1 0 0 1 1 1 1 KOW motif DUF655 PF04919.7 gi|325968730|ref|YP_004244922.1| - 4.3e-61 205.7 0.3 5.1e-61 205.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|325968730|ref|YP_004244922.1| - 7.3e-06 25.9 0.0 4.9e-05 23.3 0.0 2.1 1 1 2 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|325968730|ref|YP_004244922.1| - 0.00025 20.9 0.0 0.00066 19.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|325968731|ref|YP_004244923.1| - 4.8e-19 68.5 0.7 6.2e-19 68.1 0.5 1.2 1 1 0 1 1 1 1 RNA polymerase Rpb4 His_kinase PF06580.8 gi|325968731|ref|YP_004244923.1| - 0.043 13.7 0.1 0.11 12.3 0.0 1.8 1 1 1 2 2 2 0 Histidine kinase Ribosomal_L21e PF01157.13 gi|325968732|ref|YP_004244924.1| - 7.2e-19 67.4 0.7 8.3e-19 67.2 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|325968733|ref|YP_004244925.1| - 7.9e-09 35.5 0.2 2.6e-08 33.8 0.1 1.9 2 0 0 2 2 2 1 THUMP domain LAGLIDADG_3 PF14528.1 gi|325968734|ref|YP_004244926.1| - 0.029 14.6 0.0 0.061 13.5 0.0 1.7 1 0 0 1 1 1 0 LAGLIDADG-like domain dTDP_sugar_isom PF00908.12 gi|325968735|ref|YP_004244927.1| - 1.1e-65 220.3 0.0 1.2e-65 220.1 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase HTH_5 PF01022.15 gi|325968736|ref|YP_004244928.1| - 1.9e-05 24.2 0.1 4.9e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|325968736|ref|YP_004244928.1| - 0.0005 19.7 0.0 0.0019 17.8 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|325968736|ref|YP_004244928.1| - 0.0015 17.8 0.0 0.0034 16.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|325968736|ref|YP_004244928.1| - 0.0061 16.8 0.0 0.18 12.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|325968736|ref|YP_004244928.1| - 0.022 14.3 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.17 gi|325968736|ref|YP_004244928.1| - 0.046 13.4 0.2 0.57 9.9 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|325968736|ref|YP_004244928.1| - 0.049 13.6 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain UPF0179 PF03684.8 gi|325968736|ref|YP_004244928.1| - 0.051 13.1 0.1 0.083 12.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0179) HTH_29 PF13551.1 gi|325968736|ref|YP_004244928.1| - 0.059 13.5 0.1 0.57 10.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|325968736|ref|YP_004244928.1| - 0.26 11.3 1.6 0.67 10.0 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain Robl_LC7 PF03259.12 gi|325968737|ref|YP_004244929.1| - 4.1e-11 42.2 0.3 6e-11 41.7 0.2 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|325968737|ref|YP_004244929.1| - 0.00095 18.7 0.5 0.0011 18.6 0.4 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting DUF4651 PF15513.1 gi|325968737|ref|YP_004244929.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4651) UPF0047 PF01894.12 gi|325968738|ref|YP_004244930.1| - 1.7e-37 127.8 0.0 2.1e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DNase-RNase PF02577.9 gi|325968739|ref|YP_004244931.1| - 9.8e-33 112.2 0.4 1.2e-32 111.9 0.3 1.0 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_His PF13393.1 gi|325968740|ref|YP_004244932.1| - 8.5e-67 225.4 0.0 1e-66 225.1 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|325968740|ref|YP_004244932.1| - 2.3e-19 69.5 0.0 4.6e-19 68.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|325968740|ref|YP_004244932.1| - 6.9e-10 38.7 0.0 2.2e-09 37.1 0.0 1.9 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|325968740|ref|YP_004244932.1| - 0.0039 16.4 0.0 0.013 14.7 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|325968740|ref|YP_004244932.1| - 0.0053 15.5 1.4 0.25 10.0 0.0 2.8 2 1 0 2 2 2 2 tRNA synthetases class II (D, K and N) Peptidase_A24 PF01478.13 gi|325968741|ref|YP_004244933.1| - 4.9e-09 36.2 10.9 4.9e-09 36.2 7.5 2.0 3 0 0 3 3 3 1 Type IV leader peptidase family Arc_PepC_II PF06847.6 gi|325968741|ref|YP_004244933.1| - 0.0025 18.1 0.1 0.0025 18.1 0.1 2.0 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_M50 PF02163.17 gi|325968741|ref|YP_004244933.1| - 2.7 6.9 9.9 6.5 5.6 6.5 1.9 1 1 1 2 2 2 0 Peptidase family M50 Thiolase_C PF02803.13 gi|325968742|ref|YP_004244934.1| - 0.02 14.2 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_C PF02803.13 gi|325968743|ref|YP_004244935.1| - 3.1e-06 26.6 0.0 0.0091 15.4 0.0 2.5 2 0 0 2 2 2 2 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|325968743|ref|YP_004244935.1| - 0.0033 16.4 0.1 0.47 9.4 0.0 2.4 2 1 0 2 2 2 2 Thiolase, N-terminal domain Peptidase_M22 PF00814.20 gi|325968743|ref|YP_004244935.1| - 0.077 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycoprotease family Acetyltransf_8 PF13523.1 gi|325968743|ref|YP_004244935.1| - 0.089 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PHP PF02811.14 gi|325968744|ref|YP_004244936.1| - 0.008 15.9 0.0 5.8 6.6 0.0 3.4 2 1 1 3 3 3 1 PHP domain RecX PF02631.11 gi|325968744|ref|YP_004244936.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 RecX family Hydantoinase_A PF01968.13 gi|325968745|ref|YP_004244937.1| - 7.4e-89 297.6 5.2 2.4e-88 295.9 0.2 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|325968745|ref|YP_004244937.1| - 2.2e-46 157.5 0.0 4.9e-46 156.4 0.0 1.6 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.15 gi|325968745|ref|YP_004244937.1| - 0.0038 16.5 0.1 1.2 8.4 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.1 gi|325968745|ref|YP_004244937.1| - 0.029 12.7 0.7 1 7.6 0.0 2.6 2 1 1 3 3 3 0 MutL protein DUF1394 PF07159.7 gi|325968746|ref|YP_004244938.1| - 0.026 13.6 4.0 0.048 12.7 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1394) DUF948 PF06103.6 gi|325968746|ref|YP_004244938.1| - 0.044 13.6 0.8 0.089 12.6 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) ADIP PF11559.3 gi|325968746|ref|YP_004244938.1| - 0.049 13.5 16.0 0.06 13.2 7.4 2.7 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Tweety PF04906.8 gi|325968746|ref|YP_004244938.1| - 0.081 11.3 0.9 0.14 10.5 0.6 1.3 1 0 0 1 1 1 0 Tweety Peptidase_S46 PF10459.4 gi|325968746|ref|YP_004244938.1| - 0.082 11.3 7.7 0.13 10.6 5.3 1.2 1 0 0 1 1 1 0 Peptidase S46 Syntaxin_2 PF14523.1 gi|325968746|ref|YP_004244938.1| - 0.13 12.2 7.3 3 7.9 0.4 2.5 1 1 1 2 2 2 0 Syntaxin-like protein Phage_GPO PF05929.6 gi|325968746|ref|YP_004244938.1| - 0.24 10.6 1.4 0.39 9.9 1.0 1.4 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase TBPIP PF07106.8 gi|325968746|ref|YP_004244938.1| - 0.39 10.2 16.0 4 6.9 9.3 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|325968746|ref|YP_004244938.1| - 0.44 8.9 5.0 0.7 8.2 3.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) APG6 PF04111.7 gi|325968746|ref|YP_004244938.1| - 0.45 9.5 27.1 0.27 10.2 16.4 2.2 2 1 1 3 3 3 0 Autophagy protein Apg6 Snapin_Pallidin PF14712.1 gi|325968746|ref|YP_004244938.1| - 0.96 9.8 9.8 0.84 9.9 0.4 3.1 2 1 1 3 3 3 0 Snapin/Pallidin RasGAP_C PF03836.10 gi|325968746|ref|YP_004244938.1| - 0.96 9.1 6.0 3 7.5 3.4 2.3 2 1 0 2 2 2 0 RasGAP C-terminus tRNA-synt_His PF13393.1 gi|325968746|ref|YP_004244938.1| - 1 8.3 3.4 0.41 9.6 0.7 1.5 2 0 0 2 2 2 0 Histidyl-tRNA synthetase GlnE PF03710.10 gi|325968746|ref|YP_004244938.1| - 1.8 7.7 7.9 1.7 7.8 0.1 2.6 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase V_ATPase_I PF01496.14 gi|325968746|ref|YP_004244938.1| - 1.8 6.2 9.6 2.4 5.8 6.6 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF972 PF06156.8 gi|325968746|ref|YP_004244938.1| - 2.9 8.2 16.2 1.5 9.1 4.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF972) ERM PF00769.14 gi|325968746|ref|YP_004244938.1| - 3.1 7.2 21.0 0.51 9.8 11.9 1.6 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Atg14 PF10186.4 gi|325968746|ref|YP_004244938.1| - 3.2 6.6 11.2 5.2 5.9 7.8 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 zf-C4H2 PF10146.4 gi|325968746|ref|YP_004244938.1| - 4 7.4 12.2 0.86 9.5 5.5 1.8 2 0 0 2 2 2 0 Zinc finger-containing protein OmpH PF03938.9 gi|325968746|ref|YP_004244938.1| - 4 7.3 15.1 18 5.1 10.5 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Mod_r PF07200.8 gi|325968746|ref|YP_004244938.1| - 4.2 7.2 18.5 0.11 12.4 5.6 2.7 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein GAS PF13851.1 gi|325968746|ref|YP_004244938.1| - 4.4 6.4 18.8 1.3 8.1 10.5 1.8 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF3829 PF12889.2 gi|325968746|ref|YP_004244938.1| - 6.2 5.9 7.2 2.1 7.4 2.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3829) HK PF02110.10 gi|325968747|ref|YP_004244939.1| - 1.7e-87 292.6 1.7 1.9e-87 292.4 1.2 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|325968747|ref|YP_004244939.1| - 4.8e-07 29.3 0.5 5.7e-07 29.0 0.3 1.0 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|325968747|ref|YP_004244939.1| - 0.00012 21.3 0.1 0.00016 20.9 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase NikR_C PF08753.6 gi|325968747|ref|YP_004244939.1| - 0.11 12.4 0.3 0.33 10.8 0.2 1.8 1 0 0 1 1 1 0 NikR C terminal nickel binding domain NADH-u_ox-rdase PF10785.4 gi|325968747|ref|YP_004244939.1| - 0.13 12.5 1.4 14 6.0 0.0 3.1 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit ADH_zinc_N PF00107.21 gi|325968748|ref|YP_004244940.1| - 9e-27 93.1 0.0 2.3e-26 91.8 0.0 1.7 1 1 1 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|325968748|ref|YP_004244940.1| - 6.5e-24 83.7 0.0 1.4e-23 82.7 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|325968748|ref|YP_004244940.1| - 5.4e-12 46.7 0.0 9.7e-12 45.8 0.0 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|325968748|ref|YP_004244940.1| - 1.1e-05 25.4 0.6 1.8e-05 24.8 0.4 1.3 1 0 0 1 1 1 1 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|325968748|ref|YP_004244940.1| - 0.00018 21.1 0.2 0.00031 20.3 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_18 PF12847.2 gi|325968748|ref|YP_004244940.1| - 0.00062 20.3 0.0 0.0012 19.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain adh_short PF00106.20 gi|325968748|ref|YP_004244940.1| - 0.002 18.0 0.3 0.0031 17.4 0.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase ELFV_dehydrog PF00208.16 gi|325968748|ref|YP_004244940.1| - 0.0028 17.2 0.1 0.0039 16.8 0.1 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase THF_DHG_CYH_C PF02882.14 gi|325968748|ref|YP_004244940.1| - 0.0062 15.6 0.9 0.16 11.0 0.6 2.1 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.14 gi|325968748|ref|YP_004244940.1| - 0.0084 15.2 0.1 0.014 14.5 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|325968748|ref|YP_004244940.1| - 0.016 14.6 0.1 0.043 13.2 0.1 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|325968748|ref|YP_004244940.1| - 0.02 14.1 0.4 0.029 13.6 0.3 1.4 1 1 0 1 1 1 0 NmrA-like family TrkA_N PF02254.13 gi|325968748|ref|YP_004244940.1| - 0.026 14.5 0.0 0.075 13.0 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain CPSase_L_chain PF00289.17 gi|325968748|ref|YP_004244940.1| - 0.026 14.6 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain DapB_N PF01113.15 gi|325968748|ref|YP_004244940.1| - 0.03 14.2 0.2 0.052 13.4 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CbiJ PF02571.9 gi|325968748|ref|YP_004244940.1| - 0.04 13.2 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK KR PF08659.5 gi|325968748|ref|YP_004244940.1| - 0.051 13.2 0.1 0.074 12.7 0.0 1.2 1 0 0 1 1 1 0 KR domain DXP_reductoisom PF02670.11 gi|325968748|ref|YP_004244940.1| - 0.052 14.0 0.3 2.4 8.7 0.2 2.5 1 1 1 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Eno-Rase_NADH_b PF12242.3 gi|325968748|ref|YP_004244940.1| - 0.057 13.2 0.9 0.12 12.2 0.6 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase SIS_2 PF13580.1 gi|325968748|ref|YP_004244940.1| - 0.13 11.9 0.2 1.1 9.0 0.1 2.2 2 0 0 2 2 2 0 SIS domain CMAS PF02353.15 gi|325968748|ref|YP_004244940.1| - 0.17 10.9 0.0 0.23 10.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase E1-N PF14463.1 gi|325968748|ref|YP_004244940.1| - 0.21 11.1 1.3 0.27 10.8 0.2 1.7 2 0 0 2 2 2 0 E1 N-terminal domain POR_N PF01855.14 gi|325968749|ref|YP_004244941.1| - 4.5e-57 193.1 0.0 6.6e-57 192.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|325968749|ref|YP_004244941.1| - 1.9e-32 112.5 0.1 7.3e-32 110.6 0.0 2.0 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|325968749|ref|YP_004244941.1| - 1e-06 28.6 0.3 4e-06 26.7 0.0 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|325968749|ref|YP_004244941.1| - 4.6e-06 26.2 0.2 1e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain UPF0180 PF03698.8 gi|325968749|ref|YP_004244941.1| - 0.048 13.5 0.1 6.3 6.7 0.0 3.6 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0180) ADH_N PF08240.7 gi|325968750|ref|YP_004244942.1| - 2e-14 53.2 0.4 4.2e-14 52.2 0.3 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|325968750|ref|YP_004244942.1| - 2.3e-10 40.1 0.2 5.8e-10 38.8 0.1 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|325968750|ref|YP_004244942.1| - 7.5e-05 22.8 0.0 0.00014 21.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|325968750|ref|YP_004244942.1| - 0.077 12.0 0.1 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain AlaDh_PNT_C PF01262.16 gi|325968750|ref|YP_004244942.1| - 0.09 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NTP_transf_2 PF01909.18 gi|325968751|ref|YP_004244943.1| - 8e-10 38.9 0.1 9.2e-10 38.7 0.1 1.2 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|325968751|ref|YP_004244943.1| - 0.0055 16.3 0.0 0.0069 16.0 0.0 1.1 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.9 gi|325968752|ref|YP_004244944.1| - 8.5e-13 48.2 0.0 9.4e-13 48.0 0.0 1.0 1 0 0 1 1 1 1 HEPN domain MR_MLE_C PF13378.1 gi|325968753|ref|YP_004244945.1| - 1.5e-24 86.0 0.0 2.3e-23 82.2 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|325968753|ref|YP_004244945.1| - 4.3e-20 72.0 0.1 8.8e-20 71.0 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|325968753|ref|YP_004244945.1| - 9.8e-18 64.2 0.0 7.2e-17 61.4 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FAA_hydrolase PF01557.13 gi|325968754|ref|YP_004244946.1| - 2.1e-30 105.7 0.0 2.7e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Aldedh PF00171.17 gi|325968755|ref|YP_004244947.1| - 7e-168 558.7 0.0 7.8e-168 558.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|325968755|ref|YP_004244947.1| - 0.0023 16.7 0.0 0.0041 15.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) UxuA PF03786.8 gi|325968756|ref|YP_004244948.1| - 7.8e-97 323.9 0.4 4.1e-65 219.6 0.1 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|325968756|ref|YP_004244948.1| - 6e-19 68.1 0.0 8.2e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AFOR_C PF01314.13 gi|325968757|ref|YP_004244949.1| - 1.1e-113 379.8 0.0 1.8e-113 379.0 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|325968757|ref|YP_004244949.1| - 8e-71 237.5 0.1 1.2e-70 237.0 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Hormone_3 PF00159.13 gi|325968757|ref|YP_004244949.1| - 0.025 14.5 0.0 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Pancreatic hormone peptide DUF3726 PF12525.3 gi|325968757|ref|YP_004244949.1| - 0.036 13.8 0.1 2.5 7.9 0.0 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF3726) NAD_binding_2 PF03446.10 gi|325968758|ref|YP_004244950.1| - 4e-29 101.5 0.0 5.3e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|325968758|ref|YP_004244950.1| - 6e-18 65.0 0.0 9e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|325968758|ref|YP_004244950.1| - 7.9e-07 28.4 0.0 1.2e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|325968758|ref|YP_004244950.1| - 8.1e-07 29.3 0.0 1.4e-06 28.6 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|325968758|ref|YP_004244950.1| - 0.0002 21.0 0.0 0.0003 20.4 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|325968758|ref|YP_004244950.1| - 0.01 15.3 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.13 gi|325968758|ref|YP_004244950.1| - 0.022 14.7 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain IlvN PF07991.7 gi|325968758|ref|YP_004244950.1| - 0.048 13.0 0.0 0.086 12.2 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_N PF03721.9 gi|325968758|ref|YP_004244950.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|325968758|ref|YP_004244950.1| - 0.16 11.7 0.0 0.34 10.6 0.0 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HTH_10 PF04967.7 gi|325968759|ref|YP_004244951.1| - 5.9e-20 70.5 0.0 9.8e-20 69.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|325968759|ref|YP_004244951.1| - 0.0011 18.2 0.0 0.0043 16.3 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|325968759|ref|YP_004244951.1| - 0.0022 17.4 0.1 0.03 13.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|325968759|ref|YP_004244951.1| - 0.0036 16.5 0.5 0.0079 15.4 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|325968759|ref|YP_004244951.1| - 0.066 12.6 0.2 0.22 10.9 0.2 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mga PF05043.8 gi|325968759|ref|YP_004244951.1| - 0.093 13.0 0.3 0.33 11.2 0.1 2.0 2 0 0 2 2 2 0 Mga helix-turn-helix domain TerD PF02342.13 gi|325968759|ref|YP_004244951.1| - 0.12 11.6 0.0 0.21 10.8 0.0 1.4 1 1 0 1 1 1 0 TerD domain Sugar_tr PF00083.19 gi|325968760|ref|YP_004244952.1| - 4.5e-25 88.1 36.5 6.3e-25 87.6 25.3 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325968760|ref|YP_004244952.1| - 8.7e-23 80.5 45.0 8.7e-23 80.5 31.2 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|325968760|ref|YP_004244952.1| - 7.3e-05 21.3 9.2 7.3e-05 21.3 6.4 3.5 1 1 2 3 3 3 1 MFS/sugar transport protein DUF697 PF05128.7 gi|325968760|ref|YP_004244952.1| - 0.43 10.0 6.7 1.7 8.1 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF697) EpuA PF11772.3 gi|325968760|ref|YP_004244952.1| - 5.8 6.4 0.0 5.8 6.4 0.0 4.0 4 0 0 4 4 4 0 DNA-directed RNA polymerase subunit beta Epimerase PF01370.16 gi|325968762|ref|YP_004244954.1| - 1.8e-39 135.6 0.0 2.1e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|325968762|ref|YP_004244954.1| - 4.2e-22 78.1 0.0 5.5e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|325968762|ref|YP_004244954.1| - 1.6e-13 50.2 0.0 1.7e-12 46.8 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|325968762|ref|YP_004244954.1| - 1.7e-12 46.8 0.0 2.7e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|325968762|ref|YP_004244954.1| - 2e-10 40.0 0.0 2.8e-10 39.5 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|325968762|ref|YP_004244954.1| - 9.4e-10 38.7 0.0 1.5e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|325968762|ref|YP_004244954.1| - 1.5e-07 31.4 0.1 2.8e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|325968762|ref|YP_004244954.1| - 2.9e-05 23.4 0.1 4.5e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|325968762|ref|YP_004244954.1| - 0.00073 19.2 0.1 0.0021 17.7 0.1 1.7 1 1 0 1 1 1 1 KR domain TrkA_N PF02254.13 gi|325968762|ref|YP_004244954.1| - 0.054 13.5 0.1 0.097 12.6 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain DapH_N PF08503.5 gi|325968762|ref|YP_004244954.1| - 0.11 12.6 0.2 0.28 11.3 0.0 1.8 2 0 0 2 2 1 0 Tetrahydrodipicolinate succinyltransferase N-terminal BPD_transp_2 PF02653.11 gi|325968763|ref|YP_004244955.1| - 2.1e-43 148.2 41.6 2.7e-43 147.8 28.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|325968764|ref|YP_004244956.1| - 2.8e-51 173.3 0.0 8.2e-28 97.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|325968764|ref|YP_004244956.1| - 6.9e-12 45.9 7.3 1.1e-07 32.1 1.9 3.5 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|325968764|ref|YP_004244956.1| - 6.4e-05 22.4 0.2 0.0056 16.1 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|325968764|ref|YP_004244956.1| - 8e-05 21.8 2.8 0.2 10.6 0.1 3.7 3 1 0 4 4 4 2 AAA ATPase domain DUF258 PF03193.11 gi|325968764|ref|YP_004244956.1| - 0.00073 18.7 0.1 0.014 14.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|325968764|ref|YP_004244956.1| - 0.00091 18.8 1.8 0.73 9.4 0.3 2.9 2 1 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 SMC_N PF02463.14 gi|325968764|ref|YP_004244956.1| - 0.0023 17.2 0.2 0.45 9.7 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|325968764|ref|YP_004244956.1| - 0.018 15.1 4.2 31 4.7 0.0 4.1 3 1 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|325968764|ref|YP_004244956.1| - 0.024 15.4 6.0 0.82 10.5 0.1 3.3 3 1 0 3 3 3 0 AAA domain AAA_10 PF12846.2 gi|325968764|ref|YP_004244956.1| - 0.032 13.6 3.2 0.5 9.7 0.1 3.2 3 1 1 4 4 4 0 AAA-like domain ATP-synt_F PF01990.12 gi|325968764|ref|YP_004244956.1| - 0.052 13.9 3.6 7.5 7.0 0.0 3.7 4 0 0 4 4 3 0 ATP synthase (F/14-kDa) subunit AAA_18 PF13238.1 gi|325968764|ref|YP_004244956.1| - 0.076 13.3 4.8 1.4 9.1 0.1 3.3 3 1 0 3 3 3 0 AAA domain Zeta_toxin PF06414.7 gi|325968764|ref|YP_004244956.1| - 0.13 11.3 0.5 1.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin Miro PF08477.8 gi|325968764|ref|YP_004244956.1| - 0.14 12.6 1.0 5 7.6 0.0 3.4 4 0 0 4 4 3 0 Miro-like protein SbcCD_C PF13558.1 gi|325968764|ref|YP_004244956.1| - 0.16 11.9 0.1 21 5.1 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|325968764|ref|YP_004244956.1| - 0.16 11.5 0.2 4 6.9 0.0 3.0 4 0 0 4 4 4 0 AAA domain AAA_33 PF13671.1 gi|325968764|ref|YP_004244956.1| - 0.94 9.3 2.8 29 4.5 0.1 3.3 3 1 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|325968764|ref|YP_004244956.1| - 1.1 9.2 5.6 1.5 8.7 0.0 3.6 4 2 0 4 4 4 0 AAA domain AAA_23 PF13476.1 gi|325968764|ref|YP_004244956.1| - 1.1 9.5 8.4 0.31 11.3 2.2 2.9 3 1 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|325968764|ref|YP_004244956.1| - 1.7 8.6 6.6 2.5 8.0 0.6 3.0 2 2 0 2 2 2 0 50S ribosome-binding GTPase Peripla_BP_4 PF13407.1 gi|325968765|ref|YP_004244957.1| - 3.7e-34 118.2 2.9 4.7e-34 117.9 2.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain SBP_bac_8 PF13416.1 gi|325968766|ref|YP_004244958.1| - 6e-22 78.6 0.0 7.5e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|325968766|ref|YP_004244958.1| - 1e-12 48.4 0.0 1.4e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein IcmL PF11393.3 gi|325968766|ref|YP_004244958.1| - 0.1 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Macrophage killing protein with similarity to conjugation protein GFO_IDH_MocA PF01408.17 gi|325968767|ref|YP_004244959.1| - 1.9e-25 89.7 0.4 4.4e-25 88.5 0.1 1.7 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|325968767|ref|YP_004244959.1| - 7e-05 23.1 0.1 0.00016 22.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.12 gi|325968767|ref|YP_004244959.1| - 0.0012 18.5 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ADH_zinc_N PF00107.21 gi|325968767|ref|YP_004244959.1| - 0.024 14.2 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|325968767|ref|YP_004244959.1| - 0.028 14.5 0.1 0.051 13.6 0.1 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase KGG PF10685.4 gi|325968767|ref|YP_004244959.1| - 0.078 12.9 0.3 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 Stress-induced bacterial acidophilic repeat motif Cys_Met_Meta_PP PF01053.15 gi|325968767|ref|YP_004244959.1| - 0.1 10.8 0.1 0.16 10.2 0.1 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DXP_reductoisom PF02670.11 gi|325968767|ref|YP_004244959.1| - 0.13 12.8 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase MoCF_biosynth PF00994.19 gi|325968768|ref|YP_004244960.1| - 1.7e-18 66.3 0.2 3.2e-18 65.5 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF3391 PF11871.3 gi|325968768|ref|YP_004244960.1| - 0.034 14.3 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) NAD_binding_2 PF03446.10 gi|325968769|ref|YP_004244961.1| - 1.5e-48 164.7 0.3 2.3e-48 164.0 0.0 1.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|325968769|ref|YP_004244961.1| - 3.9e-34 117.3 1.2 5.5e-34 116.8 0.8 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|325968769|ref|YP_004244961.1| - 0.0046 16.1 0.0 0.0098 15.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|325968769|ref|YP_004244961.1| - 0.067 13.3 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GD_AH_C PF04295.8 gi|325968770|ref|YP_004244962.1| - 4.6e-155 516.1 0.6 5.2e-155 515.9 0.4 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.7 gi|325968771|ref|YP_004244963.1| - 1.8e-19 69.8 0.3 2.3e-19 69.5 0.2 1.1 1 0 0 1 1 1 1 SAF domain SBP_bac_1 PF01547.20 gi|325968772|ref|YP_004244964.1| - 2e-10 40.9 5.8 3.7e-10 40.0 4.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|325968773|ref|YP_004244965.1| - 4.2e-11 42.7 28.8 4.2e-11 42.7 19.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|325968774|ref|YP_004244966.1| - 1.2e-17 63.9 21.9 1.2e-17 63.9 15.2 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|325968775|ref|YP_004244967.1| - 8.9e-33 113.4 0.0 2e-32 112.3 0.0 1.6 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|325968775|ref|YP_004244967.1| - 4.8e-09 36.6 0.0 1.7e-06 28.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|325968775|ref|YP_004244967.1| - 0.00041 19.8 0.0 0.57 9.5 0.0 2.6 3 0 0 3 3 3 2 AAA-like domain AAA_15 PF13175.1 gi|325968775|ref|YP_004244967.1| - 0.00067 18.8 0.0 0.027 13.5 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|325968775|ref|YP_004244967.1| - 0.0018 17.5 0.0 0.015 14.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|325968775|ref|YP_004244967.1| - 0.0023 18.7 0.0 0.0078 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|325968775|ref|YP_004244967.1| - 0.0054 16.6 0.1 0.016 15.1 0.1 1.8 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|325968775|ref|YP_004244967.1| - 0.014 15.5 0.0 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|325968775|ref|YP_004244967.1| - 0.026 14.5 0.8 0.56 10.1 0.0 2.3 2 1 1 3 3 3 0 AAA ATPase domain AAA_28 PF13521.1 gi|325968775|ref|YP_004244967.1| - 0.088 12.7 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|325968775|ref|YP_004244967.1| - 0.09 12.4 0.0 0.21 11.2 0.0 1.8 2 1 0 2 2 2 0 Archaeal ATPase AAA_14 PF13173.1 gi|325968775|ref|YP_004244967.1| - 0.095 12.6 0.0 0.28 11.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|325968775|ref|YP_004244967.1| - 0.12 12.5 0.9 1.2 9.2 0.6 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|325968775|ref|YP_004244967.1| - 0.15 11.6 0.0 0.34 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF309 PF03745.9 gi|325968776|ref|YP_004244968.1| - 1.5e-18 65.9 0.7 2.2e-18 65.4 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) DUF4299 PF14132.1 gi|325968776|ref|YP_004244968.1| - 0.0068 15.5 0.1 0.0089 15.2 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4299) RSV_NS2 PF03113.9 gi|325968776|ref|YP_004244968.1| - 0.12 12.3 0.4 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 Respiratory synctial virus non-structural protein NS2 Creatininase PF02633.9 gi|325968777|ref|YP_004244969.1| - 1.5e-47 161.7 0.0 1.8e-47 161.4 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DeoC PF01791.4 gi|325968778|ref|YP_004244970.1| - 3.8e-37 127.8 0.0 4.4e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|325968778|ref|YP_004244970.1| - 0.041 13.1 0.0 0.27 10.4 0.0 2.1 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel PFK PF00365.15 gi|325968779|ref|YP_004244971.1| - 2.7e-70 236.5 0.7 3.4e-70 236.2 0.5 1.1 1 0 0 1 1 1 1 Phosphofructokinase NAD_kinase PF01513.16 gi|325968779|ref|YP_004244971.1| - 0.013 14.2 0.1 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 ATP-NAD kinase Glyco_hydro_15 PF00723.16 gi|325968780|ref|YP_004244972.1| - 4.8e-19 68.2 0.3 3e-11 42.5 0.1 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|325968780|ref|YP_004244972.1| - 9.5e-10 37.7 0.6 9.5e-10 37.7 0.4 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|325968780|ref|YP_004244972.1| - 0.00016 20.0 0.4 0.00026 19.3 0.2 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Trehalase PF01204.13 gi|325968780|ref|YP_004244972.1| - 0.021 13.4 0.0 0.041 12.5 0.0 1.4 1 0 0 1 1 1 0 Trehalase TPR_10 PF13374.1 gi|325968780|ref|YP_004244972.1| - 0.067 13.1 0.2 0.2 11.6 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat tRNA-synt_1e PF01406.14 gi|325968781|ref|YP_004244973.1| - 8.5e-112 373.1 0.0 1.2e-111 372.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|325968781|ref|YP_004244973.1| - 4.4e-11 42.0 0.1 2e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|325968781|ref|YP_004244973.1| - 1.3e-09 37.2 0.1 1.3e-05 24.0 0.0 2.5 2 1 1 3 3 3 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|325968781|ref|YP_004244973.1| - 3.5e-09 35.2 0.0 1.6e-07 29.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|325968781|ref|YP_004244973.1| - 4.3e-09 36.5 0.5 3.6e-08 33.5 0.2 2.4 2 0 0 2 2 2 1 DALR domain Cir_Bir_Yir PF06022.6 gi|325968781|ref|YP_004244973.1| - 0.0003 20.0 0.2 0.00053 19.3 0.1 1.3 1 0 0 1 1 1 1 Plasmodium variant antigen protein Cir/Yir/Bir tRNA-synt_1d PF00750.14 gi|325968781|ref|YP_004244973.1| - 0.0083 14.9 0.0 0.15 10.8 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (R) MutS_III PF05192.13 gi|325968781|ref|YP_004244973.1| - 0.064 13.0 0.0 3.2 7.4 0.0 2.4 2 1 0 2 2 2 0 MutS domain III Helicase_C_3 PF13625.1 gi|325968781|ref|YP_004244973.1| - 0.13 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Helicase conserved C-terminal domain TrmB PF01978.14 gi|325968782|ref|YP_004244974.1| - 0.0049 16.5 0.1 0.011 15.3 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|325968782|ref|YP_004244974.1| - 0.013 15.2 0.1 0.059 13.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_36 PF13730.1 gi|325968782|ref|YP_004244974.1| - 0.027 14.5 0.5 0.081 13.0 0.0 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain ENT PF03735.9 gi|325968782|ref|YP_004244974.1| - 0.074 12.7 0.0 0.6 9.8 0.0 2.3 2 0 0 2 2 2 0 ENT domain HTH_DeoR PF08220.7 gi|325968782|ref|YP_004244974.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain ATP-synt_ab PF00006.20 gi|325968783|ref|YP_004244975.1| - 2.4e-82 275.6 0.0 3.2e-82 275.2 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|325968783|ref|YP_004244975.1| - 9.6e-14 51.8 0.3 1.6e-13 51.1 0.2 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|325968783|ref|YP_004244975.1| - 1.2e-11 44.6 0.5 3.3e-11 43.2 0.3 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|325968783|ref|YP_004244975.1| - 0.079 13.0 0.0 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|325968783|ref|YP_004244975.1| - 0.16 11.5 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain vATP-synt_E PF01991.13 gi|325968784|ref|YP_004244976.1| - 9.5e-15 54.3 9.9 1.8e-14 53.5 6.9 1.4 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HK97-gp10_like PF04883.7 gi|325968784|ref|YP_004244976.1| - 0.009 16.9 0.1 0.018 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacteriophage HK97-gp10, putative tail-component KH_5 PF13184.1 gi|325968784|ref|YP_004244976.1| - 0.01 15.6 0.9 1.1 9.1 0.1 3.2 2 1 0 2 2 2 0 NusA-like KH domain RGS PF00615.14 gi|325968784|ref|YP_004244976.1| - 0.018 15.1 0.7 0.033 14.3 0.5 1.4 1 0 0 1 1 1 0 Regulator of G protein signaling domain Syntaxin_2 PF14523.1 gi|325968784|ref|YP_004244976.1| - 0.03 14.3 3.0 0.17 11.9 0.6 2.5 1 1 1 2 2 2 0 Syntaxin-like protein Pertus-S5-tox PF09276.5 gi|325968784|ref|YP_004244976.1| - 0.061 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Pertussis toxin S5 subunit Paralemmin PF03285.10 gi|325968784|ref|YP_004244976.1| - 0.11 11.9 1.9 0.12 11.8 1.3 1.2 1 0 0 1 1 1 0 Paralemmin DUF2762 PF10960.3 gi|325968784|ref|YP_004244976.1| - 0.15 11.8 2.4 0.41 10.3 1.6 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2762) Ubiquitin_3 PF14836.1 gi|325968784|ref|YP_004244976.1| - 0.17 11.5 1.0 0.36 10.5 0.7 1.8 1 1 0 1 1 1 0 Ubiquitin-like domain DUF342 PF03961.8 gi|325968784|ref|YP_004244976.1| - 0.86 7.9 5.9 0.77 8.0 3.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF342) TBPIP PF07106.8 gi|325968784|ref|YP_004244976.1| - 1.3 8.5 7.8 0.99 8.9 4.2 1.7 2 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) UPF0086 PF01868.11 gi|325968785|ref|YP_004244977.1| - 7.6e-12 44.7 0.1 9.2e-12 44.4 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Myosin_N PF02736.14 gi|325968785|ref|YP_004244977.1| - 0.17 11.6 1.3 0.26 10.9 0.9 1.3 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain Ribosomal_L29 PF00831.18 gi|325968786|ref|YP_004244978.1| - 3.8e-16 58.5 2.8 4.4e-16 58.2 1.9 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DnaB_bind PF10410.4 gi|325968786|ref|YP_004244978.1| - 0.038 13.9 0.9 0.66 10.0 0.2 2.1 1 1 1 2 2 2 0 DnaB-helicase binding domain of primase Ribosomal_S9 PF00380.14 gi|325968786|ref|YP_004244978.1| - 0.057 13.6 0.2 0.091 13.0 0.1 1.3 1 1 0 1 1 1 0 Ribosomal protein S9/S16 HHH_8 PF14716.1 gi|325968786|ref|YP_004244978.1| - 0.1 12.7 0.2 0.12 12.5 0.1 1.4 1 1 0 1 1 1 0 Helix-hairpin-helix domain Ribosomal_S3_C PF00189.15 gi|325968787|ref|YP_004244979.1| - 2.2e-13 50.2 1.2 4.2e-13 49.3 0.8 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|325968787|ref|YP_004244979.1| - 3.7e-08 32.8 0.2 1.4e-07 30.9 0.0 2.1 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|325968787|ref|YP_004244979.1| - 0.098 12.3 2.2 0.11 12.1 0.2 2.1 3 0 0 3 3 3 0 KH domain DUF35 PF01796.12 gi|325968788|ref|YP_004244980.1| - 5.2e-08 33.0 0.5 7.2e-08 32.5 0.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|325968788|ref|YP_004244980.1| - 6.2e-05 22.7 0.2 9.5e-05 22.1 0.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|325968788|ref|YP_004244980.1| - 0.12 12.2 0.1 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon Rad50_zn_hook PF04423.9 gi|325968788|ref|YP_004244980.1| - 0.12 11.8 0.5 0.21 11.1 0.3 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif DUF35 PF01796.12 gi|325968789|ref|YP_004244981.1| - 2.1e-12 47.0 0.1 3e-12 46.5 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|325968789|ref|YP_004244981.1| - 2.2e-08 33.7 0.6 5e-08 32.6 0.2 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) UPF0547 PF10571.4 gi|325968789|ref|YP_004244981.1| - 0.023 14.3 3.5 0.33 10.6 0.6 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|325968789|ref|YP_004244981.1| - 0.024 14.4 0.3 0.041 13.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|325968789|ref|YP_004244981.1| - 0.032 13.8 0.2 0.059 13.0 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|325968789|ref|YP_004244981.1| - 0.11 11.7 6.3 0.23 10.7 4.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|325968789|ref|YP_004244981.1| - 0.2 11.4 2.2 0.36 10.6 1.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2767 PF10965.3 gi|325968790|ref|YP_004244982.1| - 0.049 13.4 0.1 0.094 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2767) zf-Di19 PF05605.7 gi|325968791|ref|YP_004244983.1| - 9e-10 38.5 5.1 4.7e-06 26.6 0.1 3.1 3 0 0 3 3 3 2 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.1 gi|325968791|ref|YP_004244983.1| - 3.4e-08 33.3 9.1 0.14 12.4 0.0 4.5 4 0 0 4 4 4 2 Zinc-finger double domain zf-C2H2_4 PF13894.1 gi|325968791|ref|YP_004244983.1| - 6.1e-08 32.4 8.0 0.12 12.7 0.1 4.4 4 1 0 4 4 4 3 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|325968791|ref|YP_004244983.1| - 1.9e-07 31.0 9.4 0.22 11.9 0.1 4.3 4 1 0 4 4 4 3 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|325968791|ref|YP_004244983.1| - 1.1e-06 27.9 4.2 0.013 14.9 0.2 3.1 3 1 0 3 3 2 2 zinc-ribbon domain zf-C2H2_2 PF12756.2 gi|325968791|ref|YP_004244983.1| - 2.3e-06 27.6 2.9 0.019 15.0 0.0 3.1 1 1 3 4 4 4 2 C2H2 type zinc-finger (2 copies) DZR PF12773.2 gi|325968791|ref|YP_004244983.1| - 2.4e-06 27.2 2.0 0.067 13.0 0.0 3.1 2 2 1 3 3 3 2 Double zinc ribbon zf-met PF12874.2 gi|325968791|ref|YP_004244983.1| - 2.1e-05 24.5 6.9 0.021 15.0 0.0 3.7 4 0 0 4 4 3 2 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.3 gi|325968791|ref|YP_004244983.1| - 3.4e-05 23.8 7.2 0.17 12.0 0.1 4.0 4 0 0 4 4 4 2 Zinc-finger double-stranded RNA-binding Sgf11 PF08209.6 gi|325968791|ref|YP_004244983.1| - 0.00014 21.0 6.5 0.0033 16.7 0.0 3.9 4 0 0 4 4 4 1 Sgf11 (transcriptional regulation protein) zf-ribbon_3 PF13248.1 gi|325968791|ref|YP_004244983.1| - 0.0012 17.9 8.7 0.065 12.4 0.2 3.7 4 0 0 4 4 4 1 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|325968791|ref|YP_004244983.1| - 0.0019 17.9 1.1 0.12 12.2 0.1 3.0 3 0 0 3 3 3 1 zinc-ribbons Elf1 PF05129.8 gi|325968791|ref|YP_004244983.1| - 0.0022 17.6 5.8 0.18 11.4 0.5 3.1 1 1 2 3 3 3 2 Transcription elongation factor Elf1 like zf-DNA_Pol PF08996.5 gi|325968791|ref|YP_004244983.1| - 0.005 16.2 0.6 0.0075 15.6 0.1 1.5 1 1 0 1 1 1 1 DNA Polymerase alpha zinc finger zf-nanos PF05741.8 gi|325968791|ref|YP_004244983.1| - 0.0056 16.6 4.4 21 5.1 0.0 4.1 4 0 0 4 4 4 0 Nanos RNA binding domain Desulfoferrod_N PF06397.7 gi|325968791|ref|YP_004244983.1| - 0.0063 15.8 5.9 0.22 10.9 0.3 3.4 3 0 0 3 3 3 1 Desulfoferrodoxin, N-terminal domain zf-BED PF02892.10 gi|325968791|ref|YP_004244983.1| - 0.012 15.3 12.2 1.2 8.9 0.3 3.7 2 1 2 4 4 3 0 BED zinc finger PRP21_like_P PF12230.3 gi|325968791|ref|YP_004244983.1| - 0.012 15.0 0.9 0.053 13.0 0.0 2.3 2 1 1 3 3 3 0 Pre-mRNA splicing factor PRP21 like protein zf-RING_3 PF14369.1 gi|325968791|ref|YP_004244983.1| - 0.016 15.1 2.2 24 5.0 0.0 3.7 4 0 0 4 4 4 0 zinc-finger OrfB_Zn_ribbon PF07282.6 gi|325968791|ref|YP_004244983.1| - 0.017 14.7 4.9 0.4 10.3 0.1 3.3 2 2 1 3 3 3 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|325968791|ref|YP_004244983.1| - 0.019 14.9 9.3 0.78 9.7 0.7 3.9 3 1 1 4 4 4 0 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|325968791|ref|YP_004244983.1| - 0.021 14.4 3.2 12 5.6 0.1 3.9 4 0 0 4 4 4 0 Zinc finger, C3HC4 type (RING finger) Rad50_zn_hook PF04423.9 gi|325968791|ref|YP_004244983.1| - 0.035 13.5 2.8 19 4.8 0.1 4.0 4 0 0 4 4 4 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.7 gi|325968791|ref|YP_004244983.1| - 0.045 13.0 9.1 3.9 6.8 0.0 4.0 4 0 0 4 4 4 0 TFIIB zinc-binding C1_2 PF03107.11 gi|325968791|ref|YP_004244983.1| - 0.049 13.7 4.7 6.8 6.8 0.1 3.3 3 0 0 3 3 3 0 C1 domain zinc_ribbon_4 PF13717.1 gi|325968791|ref|YP_004244983.1| - 0.061 13.0 6.2 0.94 9.2 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|325968791|ref|YP_004244983.1| - 0.062 13.0 7.7 21 4.9 0.1 4.1 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 zf-CpG_bind_C PF12269.3 gi|325968791|ref|YP_004244983.1| - 0.074 12.5 2.0 3.5 7.0 0.1 2.2 1 1 1 2 2 2 0 CpG binding protein zinc finger C terminal domain HypA PF01155.14 gi|325968791|ref|YP_004244983.1| - 0.092 12.4 3.4 2 8.1 0.2 2.5 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family PAAR_motif PF05488.8 gi|325968791|ref|YP_004244983.1| - 0.093 12.7 2.7 0.34 10.9 0.2 2.5 3 0 0 3 3 2 0 PAAR motif CpXC PF14353.1 gi|325968791|ref|YP_004244983.1| - 0.098 12.6 4.7 7.3 6.5 0.3 3.0 3 1 0 3 3 3 0 CpXC protein zf-ZPR1 PF03367.8 gi|325968791|ref|YP_004244983.1| - 0.12 11.5 2.2 0.14 11.3 0.1 2.1 3 0 0 3 3 2 0 ZPR1 zinc-finger domain LIM PF00412.17 gi|325968791|ref|YP_004244983.1| - 0.14 12.2 2.0 5.8 7.0 0.3 3.0 2 1 1 3 3 3 0 LIM domain Lar_restr_allev PF14354.1 gi|325968791|ref|YP_004244983.1| - 0.15 12.3 7.7 4.7 7.5 2.3 3.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-UBP PF02148.14 gi|325968791|ref|YP_004244983.1| - 0.18 11.9 2.8 1.5 8.9 2.0 2.4 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Fer4_17 PF13534.1 gi|325968791|ref|YP_004244983.1| - 0.2 12.0 1.5 4.6 7.6 1.1 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain GcpE PF04551.9 gi|325968791|ref|YP_004244983.1| - 0.2 10.4 2.7 4.7 5.9 0.7 2.0 1 1 1 2 2 2 0 GcpE protein zinc_ribbon_5 PF13719.1 gi|325968791|ref|YP_004244983.1| - 0.3 10.7 9.7 1.9 8.1 2.0 3.5 3 1 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|325968791|ref|YP_004244983.1| - 0.34 10.9 8.0 0.59 10.1 0.1 3.7 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|325968791|ref|YP_004244983.1| - 0.35 10.8 6.0 4.6 7.2 0.2 3.5 4 0 0 4 4 3 0 zinc-finger binding domain of transposase IS66 PHF5 PF03660.9 gi|325968791|ref|YP_004244983.1| - 0.38 10.8 5.9 3.5 7.7 2.2 2.7 1 1 1 2 2 2 0 PHF5-like protein DUF678 PF05077.7 gi|325968791|ref|YP_004244983.1| - 0.41 10.6 3.9 4.2 7.4 0.1 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF678) IBR PF01485.16 gi|325968791|ref|YP_004244983.1| - 0.42 10.5 4.8 6.4 6.7 1.9 2.8 2 1 0 2 2 2 0 IBR domain zf-C4_Topoisom PF01396.14 gi|325968791|ref|YP_004244983.1| - 0.43 10.1 7.9 1.8 8.1 0.3 3.8 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF3279 PF11682.3 gi|325968791|ref|YP_004244983.1| - 0.6 9.6 2.9 17 4.9 0.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3279) zf-FCS PF06467.9 gi|325968791|ref|YP_004244983.1| - 0.66 9.6 3.7 3.3 7.4 0.0 2.8 2 1 1 3 3 3 0 MYM-type Zinc finger with FCS sequence motif zf-dskA_traR PF01258.12 gi|325968791|ref|YP_004244983.1| - 0.67 9.7 5.3 18 5.2 0.0 3.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Prim_Zn_Ribbon PF08273.7 gi|325968791|ref|YP_004244983.1| - 0.71 10.0 7.4 12 6.0 1.5 3.8 3 1 0 3 3 3 0 Zinc-binding domain of primase-helicase Zn_ribbon_recom PF13408.1 gi|325968791|ref|YP_004244983.1| - 0.89 9.8 9.7 49 4.2 5.1 3.3 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain DUF3449 PF11931.3 gi|325968791|ref|YP_004244983.1| - 0.93 8.9 3.2 0.59 9.6 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3449) amfpi-1 PF12190.3 gi|325968791|ref|YP_004244983.1| - 1.1 9.8 6.2 14 6.2 0.0 3.1 2 1 1 3 3 3 0 Fungal protease inhibitor HNH PF01844.18 gi|325968791|ref|YP_004244983.1| - 1.1 9.1 7.8 12 5.8 0.0 3.6 4 0 0 4 4 3 0 HNH endonuclease DUF329 PF03884.9 gi|325968791|ref|YP_004244983.1| - 1.3 8.6 4.7 2.6 7.6 0.1 3.1 4 0 0 4 4 3 0 Domain of unknown function (DUF329) Zn_Tnp_IS1595 PF12760.2 gi|325968791|ref|YP_004244983.1| - 1.3 8.8 8.4 2.9 7.7 1.3 3.3 1 1 3 4 4 4 0 Transposase zinc-ribbon domain RNHCP PF12647.2 gi|325968791|ref|YP_004244983.1| - 1.3 8.8 5.6 4 7.3 0.1 3.2 3 1 0 4 4 3 0 RNHCP domain zf-trcl PF13451.1 gi|325968791|ref|YP_004244983.1| - 1.4 8.6 5.3 38 4.0 0.1 3.3 3 0 0 3 3 3 0 Probable zinc-binding domain YhfH PF14149.1 gi|325968791|ref|YP_004244983.1| - 1.5 8.6 6.4 5.3 6.9 0.1 3.1 3 0 0 3 3 3 0 YhfH-like protein FYVE PF01363.16 gi|325968791|ref|YP_004244983.1| - 2 8.4 6.9 6.7 6.6 2.9 2.7 2 1 0 2 2 1 0 FYVE zinc finger zf-LITAF-like PF10601.4 gi|325968791|ref|YP_004244983.1| - 2.7 7.9 5.2 32 4.4 0.0 3.5 4 0 0 4 4 4 0 LITAF-like zinc ribbon domain Ribosomal_S27e PF01667.12 gi|325968791|ref|YP_004244983.1| - 2.7 7.6 7.1 21 4.7 0.1 3.5 4 0 0 4 4 3 0 Ribosomal protein S27 DNA_RNApol_7kD PF03604.8 gi|325968791|ref|YP_004244983.1| - 2.7 7.5 9.8 13 5.3 0.2 3.5 4 0 0 4 4 3 0 DNA directed RNA polymerase, 7 kDa subunit Arc_trans_TRASH PF08394.5 gi|325968791|ref|YP_004244983.1| - 3.1 8.0 6.0 50 4.1 0.0 3.9 3 1 2 5 5 5 0 Archaeal TRASH domain Rubredoxin PF00301.15 gi|325968791|ref|YP_004244983.1| - 3.1 7.7 12.8 8.7 6.3 3.4 3.8 3 1 1 4 4 4 0 Rubredoxin Nudix_N_2 PF14803.1 gi|325968791|ref|YP_004244983.1| - 3.2 7.5 11.3 12 5.7 0.1 4.0 4 0 0 4 4 4 0 Nudix N-terminal UPF0547 PF10571.4 gi|325968791|ref|YP_004244983.1| - 4.3 7.1 11.8 6.2 6.6 2.6 3.4 3 1 0 3 3 2 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|325968791|ref|YP_004244983.1| - 4.4 6.5 8.4 92 2.3 4.0 3.0 2 1 0 2 2 2 0 Transcription factor zinc-finger TFIIS_C PF01096.13 gi|325968791|ref|YP_004244983.1| - 4.8 6.8 7.8 12 5.6 0.0 3.5 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) C1_1 PF00130.17 gi|325968791|ref|YP_004244983.1| - 4.9 6.9 5.6 19 5.0 0.7 3.0 1 1 3 4 4 4 0 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_3 PF07649.7 gi|325968791|ref|YP_004244983.1| - 7.2 6.7 10.4 51 4.0 0.2 3.7 4 0 0 4 4 3 0 C1-like domain DUF46 PF01864.12 gi|325968792|ref|YP_004244984.1| - 1.5e-45 155.1 3.0 1.8e-45 154.9 2.1 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|325968792|ref|YP_004244984.1| - 2.6e-07 30.5 1.9 2.6e-07 30.5 1.3 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family FPN1 PF06963.7 gi|325968792|ref|YP_004244984.1| - 0.018 13.4 0.9 0.023 13.1 0.6 1.2 1 0 0 1 1 1 0 Ferroportin1 (FPN1) ATP-synt_F PF01990.12 gi|325968793|ref|YP_004244985.1| - 1.9e-13 50.6 0.0 2.1e-13 50.4 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Nit_Regul_Hom PF10126.4 gi|325968793|ref|YP_004244985.1| - 0.065 13.0 0.2 0.081 12.7 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII UbiA PF01040.13 gi|325968794|ref|YP_004244986.1| - 1.3e-24 86.8 30.0 2.2e-24 86.0 20.8 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF3487 PF11990.3 gi|325968794|ref|YP_004244986.1| - 0.12 11.7 0.2 0.12 11.7 0.1 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF3487) Glu_synthase PF01645.12 gi|325968795|ref|YP_004244987.1| - 7.2e-22 77.7 11.2 1e-19 70.7 5.7 3.6 1 1 1 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|325968795|ref|YP_004244987.1| - 4.2e-21 75.1 5.1 8.4e-15 54.4 1.7 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.10 gi|325968795|ref|YP_004244987.1| - 0.0017 17.5 1.6 0.0032 16.6 1.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase He_PIG_assoc PF10632.4 gi|325968795|ref|YP_004244987.1| - 0.037 13.3 0.0 0.069 12.4 0.0 1.5 1 0 0 1 1 1 0 He_PIG associated, NEW1 domain of bacterial glycohydrolase AMP-binding PF00501.23 gi|325968796|ref|YP_004244988.1| - 2.2e-72 243.7 0.0 2.7e-72 243.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325968796|ref|YP_004244988.1| - 1.4e-14 54.8 0.7 3.3e-13 50.3 0.2 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|325968797|ref|YP_004244989.1| - 2.2e-80 270.1 0.0 2.8e-80 269.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325968797|ref|YP_004244989.1| - 7.7e-10 39.5 0.1 2.4e-09 37.9 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACP_syn_III_C PF08541.5 gi|325968797|ref|YP_004244989.1| - 0.033 14.1 0.0 0.091 12.7 0.0 1.7 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PBP_like PF12727.2 gi|325968798|ref|YP_004244990.1| - 3.9e-62 208.6 0.0 8e-62 207.6 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|325968798|ref|YP_004244990.1| - 6.6e-52 175.1 0.2 1e-51 174.4 0.2 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|325968798|ref|YP_004244990.1| - 1.7e-28 98.8 0.1 3.2e-28 97.9 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|325968798|ref|YP_004244990.1| - 2.2e-16 59.5 0.1 1.3e-15 57.0 0.0 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|325968798|ref|YP_004244990.1| - 2.1e-08 34.1 0.0 3.9e-08 33.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|325968798|ref|YP_004244990.1| - 0.00036 20.0 0.0 0.0011 18.3 0.0 1.7 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein IF2_N PF04760.10 gi|325968798|ref|YP_004244990.1| - 0.11 12.2 0.1 0.38 10.4 0.1 1.9 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region SBP_bac_3 PF00497.15 gi|325968798|ref|YP_004244990.1| - 0.11 11.6 0.0 0.18 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 VKOR PF07884.9 gi|325968799|ref|YP_004244991.1| - 1.1e-23 83.6 14.5 1.3e-23 83.4 10.0 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family HAD_2 PF13419.1 gi|325968800|ref|YP_004244992.1| - 1.2e-10 41.8 0.0 2.5e-10 40.8 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|325968800|ref|YP_004244992.1| - 2.7e-05 24.4 0.0 3.6e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|325968800|ref|YP_004244992.1| - 0.006 16.4 0.4 0.028 14.3 0.3 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|325968800|ref|YP_004244992.1| - 0.1 12.9 0.0 0.39 11.0 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase SAC3_GANP PF03399.11 gi|325968801|ref|YP_004244993.1| - 0.004 16.7 1.8 0.004 16.7 1.2 1.7 2 0 0 2 2 2 1 SAC3/GANP/Nin1/mts3/eIF-3 p25 family Translin PF01997.11 gi|325968801|ref|YP_004244993.1| - 0.028 14.0 2.6 0.029 13.9 0.6 1.8 2 1 0 2 2 2 0 Translin family DUF4363 PF14276.1 gi|325968801|ref|YP_004244993.1| - 0.045 13.4 0.2 0.045 13.4 0.1 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4363) DUF2450 PF10475.4 gi|325968801|ref|YP_004244993.1| - 0.046 12.6 3.6 0.031 13.1 0.4 2.0 1 1 0 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) CSTF2_hinge PF14327.1 gi|325968801|ref|YP_004244993.1| - 0.14 12.2 5.0 0.45 10.6 0.2 2.6 2 0 0 2 2 2 0 Hinge domain of cleavage stimulation factor subunit 2 DUF4179 PF13786.1 gi|325968801|ref|YP_004244993.1| - 0.21 11.8 3.0 4.1 7.6 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) DUF4175 PF13779.1 gi|325968801|ref|YP_004244993.1| - 0.26 8.9 15.8 0.62 7.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4175) MarR_2 PF12802.2 gi|325968802|ref|YP_004244994.1| - 2.9e-07 30.0 0.0 1.1e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|325968802|ref|YP_004244994.1| - 1.7e-06 27.3 0.0 3.2e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|325968802|ref|YP_004244994.1| - 1.5e-05 24.6 0.0 3.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|325968802|ref|YP_004244994.1| - 0.0001 21.9 0.0 0.0001 21.9 0.0 2.0 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|325968802|ref|YP_004244994.1| - 0.00032 20.4 0.0 0.00049 19.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain gpUL132 PF11359.3 gi|325968802|ref|YP_004244994.1| - 0.00083 18.7 0.6 0.00083 18.7 0.4 1.5 2 0 0 2 2 2 1 Glycoprotein UL132 TMEM154 PF15102.1 gi|325968802|ref|YP_004244994.1| - 0.0019 17.9 1.9 0.0032 17.1 1.4 1.3 1 0 0 1 1 1 1 TMEM154 protein family HTH_11 PF08279.7 gi|325968802|ref|YP_004244994.1| - 0.0029 17.2 0.0 0.0057 16.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|325968802|ref|YP_004244994.1| - 0.0075 16.2 0.7 0.014 15.4 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain BatD PF13584.1 gi|325968802|ref|YP_004244994.1| - 0.0088 14.6 0.0 0.013 14.1 0.0 1.2 1 0 0 1 1 1 1 Oxygen tolerance HTH_27 PF13463.1 gi|325968802|ref|YP_004244994.1| - 0.0098 16.1 0.1 0.04 14.2 0.0 2.2 2 1 0 2 2 2 1 Winged helix DNA-binding domain Rifin_STEVOR PF02009.11 gi|325968802|ref|YP_004244994.1| - 0.01 15.5 0.4 0.013 15.1 0.3 1.1 1 0 0 1 1 1 0 Rifin/stevor family HTH_5 PF01022.15 gi|325968802|ref|YP_004244994.1| - 0.066 12.8 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|325968802|ref|YP_004244994.1| - 0.089 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain RNA_pol_Rpc34 PF05158.7 gi|325968802|ref|YP_004244994.1| - 0.1 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DUF912 PF06024.7 gi|325968802|ref|YP_004244994.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) HTH_1 PF00126.22 gi|325968802|ref|YP_004244994.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GGDN PF05165.7 gi|325968803|ref|YP_004244995.1| - 4.1e-40 137.3 0.0 1.5e-39 135.5 0.0 1.7 1 1 0 1 1 1 1 GGDN family HAD_2 PF13419.1 gi|325968804|ref|YP_004244996.1| - 2.5e-16 60.4 0.0 3.1e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|325968804|ref|YP_004244996.1| - 0.0063 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|325968804|ref|YP_004244996.1| - 0.028 14.8 0.0 0.075 13.4 0.0 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Pox_VLTF3 PF04947.9 gi|325968804|ref|YP_004244996.1| - 0.099 12.1 0.9 0.53 9.7 0.2 2.1 2 0 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like CxxCxxCC PF03692.10 gi|325968805|ref|YP_004244997.1| - 2.4e-08 34.3 0.0 4.9e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ABC_tran PF00005.22 gi|325968806|ref|YP_004244998.1| - 1.7e-31 109.3 0.0 2.7e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968806|ref|YP_004244998.1| - 2.6e-13 50.6 0.0 1.3e-09 38.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|325968806|ref|YP_004244998.1| - 2.2e-08 34.4 0.1 3.8e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_15 PF13175.1 gi|325968806|ref|YP_004244998.1| - 0.00045 19.3 0.0 0.039 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|325968806|ref|YP_004244998.1| - 0.00089 19.6 1.4 0.0025 18.1 0.2 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|325968806|ref|YP_004244998.1| - 0.012 15.0 0.1 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|325968806|ref|YP_004244998.1| - 0.018 14.5 0.2 2.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|325968806|ref|YP_004244998.1| - 0.025 13.9 0.1 0.061 12.7 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|325968806|ref|YP_004244998.1| - 0.034 14.2 0.1 0.1 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|325968806|ref|YP_004244998.1| - 0.035 14.3 0.2 0.28 11.3 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|325968806|ref|YP_004244998.1| - 0.081 12.1 0.0 4.5 6.4 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|325968806|ref|YP_004244998.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|325968807|ref|YP_004244999.1| - 1.3e-34 119.1 18.6 1.3e-34 119.1 12.9 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|325968807|ref|YP_004244999.1| - 2.3e-18 66.3 22.8 2.3e-18 66.3 15.8 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|325968807|ref|YP_004244999.1| - 8.6e-11 41.2 18.8 1.2e-10 40.7 13.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|325968807|ref|YP_004244999.1| - 2.2e-09 36.8 27.1 3.5e-09 36.1 18.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|325968807|ref|YP_004244999.1| - 0.0026 17.0 19.1 0.0026 17.0 13.2 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein MARVEL PF01284.18 gi|325968807|ref|YP_004244999.1| - 8.9 6.1 12.7 0.081 12.7 1.5 2.6 3 0 0 3 3 3 0 Membrane-associating domain PBP PF01161.15 gi|325968808|ref|YP_004245000.1| - 1.8e-41 141.3 0.0 2.1e-41 141.1 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ILVD_EDD PF00920.16 gi|325968809|ref|YP_004245001.1| - 4.5e-216 718.3 0.1 5e-216 718.1 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family Antitoxin-MazE PF04014.13 gi|325968809|ref|YP_004245001.1| - 1.3 8.7 4.7 7.2 6.4 0.0 3.4 3 0 0 3 3 3 0 Antidote-toxin recognition MazE RNA_binding PF01877.12 gi|325968810|ref|YP_004245002.1| - 1.6e-26 92.6 0.1 2e-26 92.3 0.1 1.1 1 0 0 1 1 1 1 RNA binding GTP_cyclohydroI PF01227.17 gi|325968811|ref|YP_004245003.1| - 3.9e-49 166.3 0.0 4.7e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I CAMP_factor PF07373.6 gi|325968812|ref|YP_004245004.1| - 0.0034 16.9 2.4 0.0034 16.9 1.7 2.3 2 0 0 2 2 2 1 CAMP factor (Cfa) WEMBL PF05701.6 gi|325968812|ref|YP_004245004.1| - 0.022 13.2 2.1 0.023 13.1 0.5 1.7 2 0 0 2 2 2 0 Weak chloroplast movement under blue light ALIX_LYPXL_bnd PF13949.1 gi|325968812|ref|YP_004245004.1| - 0.051 12.5 8.6 0.15 11.0 5.9 1.8 1 1 0 1 1 1 0 ALIX V-shaped domain binding to HIV TBPIP PF07106.8 gi|325968812|ref|YP_004245004.1| - 0.052 13.1 3.9 0.31 10.5 1.4 2.4 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Syntaxin-6_N PF09177.6 gi|325968812|ref|YP_004245004.1| - 0.47 10.9 6.2 3.7 8.0 2.0 3.1 2 1 0 2 2 2 0 Syntaxin 6, N-terminal YlbD_coat PF14071.1 gi|325968812|ref|YP_004245004.1| - 1.2 9.1 5.6 13 5.9 1.4 2.5 2 0 0 2 2 2 0 Putative coat protein DivIVA PF05103.8 gi|325968812|ref|YP_004245004.1| - 1.6 8.8 6.7 19 5.2 0.1 2.4 2 0 0 2 2 2 0 DivIVA protein DUF972 PF06156.8 gi|325968812|ref|YP_004245004.1| - 1.8 8.9 7.8 37 4.7 2.8 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF972) Snapin_Pallidin PF14712.1 gi|325968812|ref|YP_004245004.1| - 2.4 8.5 11.1 1.4 9.2 2.6 3.4 2 1 2 4 4 4 0 Snapin/Pallidin TMF_DNA_bd PF12329.3 gi|325968812|ref|YP_004245004.1| - 4.8 7.0 8.8 7.3 6.4 2.4 2.7 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding FliJ PF02050.11 gi|325968812|ref|YP_004245004.1| - 6.9 6.7 9.8 8.5 6.4 2.4 2.8 2 1 0 2 2 2 0 Flagellar FliJ protein ABC_tran PF00005.22 gi|325968813|ref|YP_004245005.1| - 1.4e-32 112.8 0.1 3.7e-32 111.5 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|325968813|ref|YP_004245005.1| - 3.7e-11 43.5 0.1 5.2e-06 26.6 0.0 2.4 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|325968813|ref|YP_004245005.1| - 7.4e-05 22.8 0.0 0.00015 21.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|325968813|ref|YP_004245005.1| - 0.0001 21.6 0.1 0.021 14.0 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|325968813|ref|YP_004245005.1| - 0.00043 19.8 0.3 0.0057 16.1 0.3 2.1 1 1 1 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|325968813|ref|YP_004245005.1| - 0.00054 18.9 0.0 0.00096 18.1 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|325968813|ref|YP_004245005.1| - 0.00075 18.7 0.1 0.0013 17.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|325968813|ref|YP_004245005.1| - 0.0013 18.8 0.3 0.0067 16.5 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325968813|ref|YP_004245005.1| - 0.0019 17.6 0.0 0.0041 16.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|325968813|ref|YP_004245005.1| - 0.0032 18.2 1.7 0.04 14.7 0.2 2.6 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|325968813|ref|YP_004245005.1| - 0.006 15.6 0.0 0.24 10.3 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain cobW PF02492.14 gi|325968813|ref|YP_004245005.1| - 0.0088 15.5 0.5 0.025 14.0 0.1 1.9 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RNA12 PF10443.4 gi|325968813|ref|YP_004245005.1| - 0.013 14.0 0.0 0.027 12.9 0.0 1.5 1 1 1 2 2 2 0 RNA12 protein AAA_13 PF13166.1 gi|325968813|ref|YP_004245005.1| - 0.013 14.0 0.1 1.7 6.9 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|325968813|ref|YP_004245005.1| - 0.021 14.5 0.1 0.062 13.0 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|325968813|ref|YP_004245005.1| - 0.028 14.1 0.3 1.5 8.5 0.2 2.7 1 1 1 2 2 2 0 NTPase AAA_25 PF13481.1 gi|325968813|ref|YP_004245005.1| - 0.047 13.0 0.1 0.18 11.1 0.0 2.1 3 0 0 3 3 2 0 AAA domain NACHT PF05729.7 gi|325968813|ref|YP_004245005.1| - 0.05 13.2 0.3 0.16 11.5 0.0 1.9 1 1 1 2 2 2 0 NACHT domain MobB PF03205.9 gi|325968813|ref|YP_004245005.1| - 0.052 13.2 0.4 0.13 11.9 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|325968813|ref|YP_004245005.1| - 0.052 13.2 0.1 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase AAA_18 PF13238.1 gi|325968813|ref|YP_004245005.1| - 0.057 13.7 0.1 0.23 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|325968813|ref|YP_004245005.1| - 0.059 13.2 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|325968813|ref|YP_004245005.1| - 0.066 12.7 0.1 0.13 11.7 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|325968813|ref|YP_004245005.1| - 0.073 13.2 0.1 1.1 9.4 0.0 2.5 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.18 gi|325968813|ref|YP_004245005.1| - 0.1 11.9 0.8 0.38 10.1 0.5 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Adeno_IVa2 PF02456.10 gi|325968813|ref|YP_004245005.1| - 0.12 11.0 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_23 PF13476.1 gi|325968813|ref|YP_004245005.1| - 0.13 12.5 1.1 0.88 9.8 0.2 2.1 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|325968813|ref|YP_004245005.1| - 0.14 11.2 2.1 9.5 5.2 0.1 3.1 2 1 1 3 3 3 0 KaiC AAA_30 PF13604.1 gi|325968813|ref|YP_004245005.1| - 0.14 11.6 0.0 0.29 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMPL PF03176.10 gi|325968814|ref|YP_004245006.1| - 6.4e-67 225.6 30.4 1.8e-46 158.4 6.7 2.7 3 0 0 3 3 3 2 MMPL family CorA PF01544.13 gi|325968816|ref|YP_004245008.1| - 2e-17 63.1 1.6 3.8e-17 62.2 1.1 1.4 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF4471 PF14740.1 gi|325968816|ref|YP_004245008.1| - 0.11 11.7 0.2 0.18 11.0 0.1 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4471) DUF1732 PF08340.6 gi|325968817|ref|YP_004245009.1| - 0.043 13.6 0.0 0.071 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1732) Ald_Xan_dh_C2 PF02738.13 gi|325968818|ref|YP_004245010.1| - 8.5e-101 337.9 0.0 5.9e-83 279.0 0.0 2.1 1 1 1 2 2 2 2 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|325968818|ref|YP_004245010.1| - 2.8e-17 62.7 0.1 1.2e-16 60.7 0.0 2.0 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Robl_LC7 PF03259.12 gi|325968819|ref|YP_004245011.1| - 4.9e-07 29.2 0.1 6.2e-07 28.8 0.1 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|325968819|ref|YP_004245011.1| - 0.00094 18.7 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Sugar_tr PF00083.19 gi|325968820|ref|YP_004245012.1| - 1.8e-53 181.7 33.0 2.5e-53 181.2 22.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325968820|ref|YP_004245012.1| - 9.2e-34 116.6 57.0 2.7e-25 88.8 16.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|325968820|ref|YP_004245012.1| - 0.074 12.8 14.7 0.54 10.0 0.2 4.2 4 1 1 5 5 5 0 MFS_1 like family HAD_2 PF13419.1 gi|325968821|ref|YP_004245013.1| - 6.6e-22 78.5 0.0 8.7e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|325968821|ref|YP_004245013.1| - 1.5e-09 38.6 0.0 5.6e-09 36.7 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|325968821|ref|YP_004245013.1| - 2.7e-07 30.1 0.0 5.2e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|325968821|ref|YP_004245013.1| - 0.0049 17.0 0.2 0.0095 16.1 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|325968821|ref|YP_004245013.1| - 0.027 13.8 0.0 2.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial PGP phosphatase 5_nucleotid PF05761.9 gi|325968821|ref|YP_004245013.1| - 0.036 12.5 0.0 0.44 9.0 0.0 2.2 1 1 0 2 2 2 0 5' nucleotidase family PhoU_div PF01865.11 gi|325968822|ref|YP_004245014.1| - 4.7e-19 68.4 7.1 5.9e-19 68.0 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 YbjQ_1 PF01906.12 gi|325968822|ref|YP_004245014.1| - 0.041 14.3 0.1 0.13 12.7 0.1 1.8 1 0 0 1 1 1 0 Putative heavy-metal-binding AAA_PrkA PF08298.6 gi|325968822|ref|YP_004245014.1| - 0.053 12.2 1.6 0.062 11.9 0.2 1.7 2 0 0 2 2 2 0 PrkA AAA domain PhoU PF01895.14 gi|325968822|ref|YP_004245014.1| - 0.12 12.8 11.0 0.3 11.5 2.7 2.5 2 1 0 2 2 2 0 PhoU domain DUF2849 PF11011.3 gi|325968823|ref|YP_004245015.1| - 0.12 12.6 0.0 0.35 11.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2849) TIP49 PF06068.8 gi|325968824|ref|YP_004245016.1| - 6.5e-152 505.8 0.2 7.7e-152 505.6 0.1 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|325968824|ref|YP_004245016.1| - 3.8e-11 43.2 2.0 3.8e-08 33.5 0.0 3.0 3 1 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|325968824|ref|YP_004245016.1| - 3.5e-08 33.6 0.1 4.1e-06 26.8 0.0 2.6 2 1 0 2 2 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|325968824|ref|YP_004245016.1| - 1.4e-07 30.7 4.8 7.7e-05 21.8 0.0 3.4 3 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|325968824|ref|YP_004245016.1| - 3.8e-06 27.0 0.1 0.01 15.9 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|325968824|ref|YP_004245016.1| - 5e-05 22.9 0.3 0.00012 21.8 0.2 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_5 PF07728.9 gi|325968824|ref|YP_004245016.1| - 0.0001 22.0 0.1 0.013 15.2 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|325968824|ref|YP_004245016.1| - 0.00022 20.4 0.1 0.001 18.2 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|325968824|ref|YP_004245016.1| - 0.00029 20.3 0.1 0.11 11.9 0.0 2.7 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|325968824|ref|YP_004245016.1| - 0.00042 19.7 0.0 0.00088 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325968824|ref|YP_004245016.1| - 0.00053 20.8 0.1 0.002 18.9 0.0 2.0 2 1 0 2 2 1 1 AAA domain DnaB_C PF03796.10 gi|325968824|ref|YP_004245016.1| - 0.00076 18.4 0.0 0.0025 16.7 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|325968824|ref|YP_004245016.1| - 0.0009 18.6 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|325968824|ref|YP_004245016.1| - 0.0016 17.5 0.1 0.0033 16.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|325968824|ref|YP_004245016.1| - 0.0032 17.3 0.0 0.0061 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|325968824|ref|YP_004245016.1| - 0.0039 17.0 0.4 0.87 9.4 0.0 3.2 4 0 0 4 4 4 1 AAA domain NACHT PF05729.7 gi|325968824|ref|YP_004245016.1| - 0.0063 16.1 0.1 0.04 13.5 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|325968824|ref|YP_004245016.1| - 0.013 15.8 0.0 0.046 14.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|325968824|ref|YP_004245016.1| - 0.013 15.4 0.2 0.072 13.0 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_11 PF13086.1 gi|325968824|ref|YP_004245016.1| - 0.043 13.3 0.1 0.084 12.4 0.0 1.5 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|325968824|ref|YP_004245016.1| - 0.045 13.9 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|325968824|ref|YP_004245016.1| - 0.046 12.6 0.0 0.063 12.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|325968824|ref|YP_004245016.1| - 0.053 12.7 0.1 0.13 11.5 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.22 gi|325968824|ref|YP_004245016.1| - 0.076 13.3 0.0 0.16 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter DUF3525 PF12039.3 gi|325968824|ref|YP_004245016.1| - 0.14 10.6 0.0 0.28 9.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) Lactamase_B PF00753.22 gi|325968825|ref|YP_004245017.1| - 1.7e-18 67.0 0.5 3.1e-18 66.1 0.3 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Beta-Casp PF10996.3 gi|325968825|ref|YP_004245017.1| - 3e-18 65.9 0.0 7e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|325968825|ref|YP_004245017.1| - 4.1e-12 46.0 0.0 7.9e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|325968825|ref|YP_004245017.1| - 3.3e-11 42.8 0.1 8.2e-11 41.5 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase DRMBL PF07522.9 gi|325968825|ref|YP_004245017.1| - 0.02 14.9 0.0 0.031 14.3 0.0 1.4 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase PDEase_II PF02112.10 gi|325968825|ref|YP_004245017.1| - 0.17 10.7 0.0 0.27 10.0 0.0 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Radical_SAM PF04055.16 gi|325968826|ref|YP_004245018.1| - 7.8e-24 84.7 0.1 1.4e-23 83.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|325968826|ref|YP_004245018.1| - 1.3e-09 38.2 0.2 2.6e-09 37.2 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|325968826|ref|YP_004245018.1| - 3.2e-08 33.7 0.0 6.1e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|325968826|ref|YP_004245018.1| - 4.8e-08 33.0 0.0 8.6e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|325968827|ref|YP_004245019.1| - 7e-15 55.5 0.0 1.1e-14 54.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|325968827|ref|YP_004245019.1| - 8.9e-08 32.3 0.0 1.7e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|325968827|ref|YP_004245019.1| - 2.2e-05 24.4 0.0 5e-05 23.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|325968827|ref|YP_004245019.1| - 0.01 16.1 0.0 0.01 16.1 0.0 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain YyzF PF14116.1 gi|325968827|ref|YP_004245019.1| - 0.086 12.8 0.2 5.1 7.1 0.0 2.3 2 0 0 2 2 2 0 YyzF-like protein His_Phos_1 PF00300.17 gi|325968829|ref|YP_004245021.1| - 6.3e-26 91.3 0.0 7.5e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Peptidase_M24 PF00557.19 gi|325968830|ref|YP_004245022.1| - 7.4e-53 179.1 0.3 9.9e-53 178.7 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|325968830|ref|YP_004245022.1| - 9.4e-11 42.3 0.0 3.8e-10 40.3 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain CRAL_TRIO PF00650.15 gi|325968830|ref|YP_004245022.1| - 0.082 12.4 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 CRAL/TRIO domain DUF3027 PF11228.3 gi|325968830|ref|YP_004245022.1| - 0.1 12.2 0.0 0.23 11.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3027) JmjN PF02375.12 gi|325968831|ref|YP_004245023.1| - 0.026 14.0 0.1 0.057 12.9 0.1 1.5 1 0 0 1 1 1 0 jmjN domain H_PPase PF03030.11 gi|325968832|ref|YP_004245024.1| - 3e-217 723.1 42.8 3.4e-217 722.9 29.7 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase PEP-utilizers_C PF02896.13 gi|325968833|ref|YP_004245025.1| - 4.4e-82 275.2 0.1 7.4e-82 274.5 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|325968833|ref|YP_004245025.1| - 1.2e-50 172.4 0.0 3.4e-50 170.9 0.0 1.7 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|325968833|ref|YP_004245025.1| - 9.9e-23 79.5 0.8 3.6e-22 77.7 0.4 2.1 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain TauE PF01925.14 gi|325968834|ref|YP_004245026.1| - 4.3e-46 157.3 39.5 4.9e-46 157.1 27.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF948 PF06103.6 gi|325968834|ref|YP_004245026.1| - 0.25 11.2 0.1 0.25 11.2 0.1 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1304 PF06993.7 gi|325968834|ref|YP_004245026.1| - 2 8.1 8.8 0.28 10.8 0.2 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1304) DUF3185 PF11381.3 gi|325968836|ref|YP_004245028.1| - 0.25 11.1 6.8 0.78 9.5 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) NfeD PF01957.13 gi|325968836|ref|YP_004245028.1| - 0.73 9.9 6.8 5 7.2 0.4 2.2 2 0 0 2 2 2 0 NfeD-like C-terminal, partner-binding Nop PF01798.13 gi|325968837|ref|YP_004245029.1| - 2.7e-47 159.8 0.2 5.9e-47 158.7 0.0 1.7 2 0 0 2 2 2 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|325968837|ref|YP_004245029.1| - 3.8e-22 77.8 0.0 1.2e-21 76.2 0.0 2.0 1 0 0 1 1 1 1 NOSIC (NUC001) domain Fibrillarin PF01269.12 gi|325968838|ref|YP_004245030.1| - 1.6e-98 328.1 0.4 1.8e-98 328.0 0.3 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|325968838|ref|YP_004245030.1| - 1.3e-05 24.8 0.0 2.1e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|325968838|ref|YP_004245030.1| - 0.0072 15.8 0.0 0.0093 15.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.13 gi|325968838|ref|YP_004245030.1| - 0.078 12.0 0.0 0.16 11.0 0.0 1.4 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family HTH_3 PF01381.17 gi|325968839|ref|YP_004245031.1| - 2.9e-12 46.2 0.5 1.2e-11 44.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|325968839|ref|YP_004245031.1| - 6.8e-12 45.2 0.4 4.5e-11 42.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|325968839|ref|YP_004245031.1| - 2.7e-09 37.0 0.1 6.6e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|325968839|ref|YP_004245031.1| - 5e-06 26.0 0.0 1.3e-05 24.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|325968839|ref|YP_004245031.1| - 0.00011 21.7 0.2 0.00027 20.4 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain MerR PF00376.18 gi|325968839|ref|YP_004245031.1| - 0.00072 19.0 0.2 0.0016 17.9 0.1 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_17 PF12728.2 gi|325968839|ref|YP_004245031.1| - 0.00095 19.3 1.1 0.0031 17.7 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|325968839|ref|YP_004245031.1| - 0.0024 17.4 0.3 0.006 16.1 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|325968839|ref|YP_004245031.1| - 0.0027 17.6 0.0 0.0068 16.3 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|325968839|ref|YP_004245031.1| - 0.003 17.3 0.1 0.016 15.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase MerR_1 PF13411.1 gi|325968839|ref|YP_004245031.1| - 0.0034 17.1 0.0 0.0078 15.9 0.0 1.7 1 0 0 1 1 1 1 MerR HTH family regulatory protein MarR PF01047.17 gi|325968839|ref|YP_004245031.1| - 0.014 15.0 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_8 PF02954.14 gi|325968839|ref|YP_004245031.1| - 0.025 14.1 0.1 0.094 12.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_26 PF13443.1 gi|325968839|ref|YP_004245031.1| - 0.026 14.7 0.1 0.063 13.4 0.1 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|325968839|ref|YP_004245031.1| - 0.026 13.8 0.1 0.075 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|325968839|ref|YP_004245031.1| - 0.043 13.6 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.1 gi|325968839|ref|YP_004245031.1| - 0.045 13.5 0.1 0.38 10.5 0.0 2.6 2 0 0 2 2 2 0 HTH domain HTH_38 PF13936.1 gi|325968839|ref|YP_004245031.1| - 0.069 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|325968839|ref|YP_004245031.1| - 0.081 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|325968839|ref|YP_004245031.1| - 0.082 12.4 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|325968839|ref|YP_004245031.1| - 0.083 12.2 0.1 0.18 11.1 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 CENP-B_N PF04218.8 gi|325968839|ref|YP_004245031.1| - 0.096 12.1 0.0 0.29 10.5 0.0 1.8 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain DUF3935 PF13071.1 gi|325968839|ref|YP_004245031.1| - 0.13 12.6 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3935) TRM PF02005.11 gi|325968840|ref|YP_004245032.1| - 7.7e-86 288.3 0.0 9e-86 288.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|325968840|ref|YP_004245032.1| - 1.7e-06 27.7 0.0 2.7e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|325968840|ref|YP_004245032.1| - 7.6e-06 25.9 0.0 1.4e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968840|ref|YP_004245032.1| - 6.5e-05 22.5 0.0 8.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|325968840|ref|YP_004245032.1| - 0.00095 18.6 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_3 PF01596.12 gi|325968840|ref|YP_004245032.1| - 0.0015 17.5 0.0 0.0024 16.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|325968840|ref|YP_004245032.1| - 0.0033 17.9 0.0 0.01 16.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|325968840|ref|YP_004245032.1| - 0.022 15.6 0.0 0.037 14.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|325968840|ref|YP_004245032.1| - 0.026 13.9 0.0 0.046 13.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain UPF0020 PF01170.13 gi|325968840|ref|YP_004245032.1| - 0.07 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 ADH_zinc_N PF00107.21 gi|325968840|ref|YP_004245032.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase AAA_17 PF13207.1 gi|325968841|ref|YP_004245033.1| - 7.4e-11 42.9 0.1 1.3e-10 42.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|325968841|ref|YP_004245033.1| - 1.9e-10 41.1 0.0 3.5e-10 40.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|325968841|ref|YP_004245033.1| - 1.1e-09 38.3 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.1 gi|325968841|ref|YP_004245033.1| - 0.00017 21.5 0.1 0.0017 18.2 0.0 2.3 1 1 0 1 1 1 1 Cytidylate kinase-like family KTI12 PF08433.5 gi|325968841|ref|YP_004245033.1| - 0.00052 19.2 0.1 0.0063 15.7 0.0 2.2 2 1 0 2 2 2 1 Chromatin associated protein KTI12 ADK PF00406.17 gi|325968841|ref|YP_004245033.1| - 0.0013 18.6 0.0 0.0063 16.4 0.0 1.9 1 1 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.7 gi|325968841|ref|YP_004245033.1| - 0.0035 16.4 0.0 0.0067 15.5 0.0 1.4 1 1 0 1 1 1 1 Zeta toxin CoaE PF01121.15 gi|325968841|ref|YP_004245033.1| - 0.0045 16.4 0.1 0.13 11.6 0.0 2.3 2 1 0 2 2 2 1 Dephospho-CoA kinase AAA_19 PF13245.1 gi|325968841|ref|YP_004245033.1| - 0.013 15.2 0.3 0.038 13.7 0.1 1.9 1 1 0 1 1 1 0 Part of AAA domain ATP_bind_2 PF03668.10 gi|325968841|ref|YP_004245033.1| - 0.018 14.1 1.1 0.085 11.9 0.7 2.0 1 1 0 1 1 1 0 P-loop ATPase protein family cobW PF02492.14 gi|325968841|ref|YP_004245033.1| - 0.027 13.9 0.3 0.78 9.1 0.2 2.2 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|325968841|ref|YP_004245033.1| - 0.033 13.9 0.9 0.067 12.8 0.1 1.9 2 1 1 3 3 2 0 NTPase AAA PF00004.24 gi|325968841|ref|YP_004245033.1| - 0.04 14.1 0.1 0.089 12.9 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|325968841|ref|YP_004245033.1| - 0.085 12.5 0.0 0.15 11.6 0.0 1.6 1 1 0 1 1 1 0 Adenylylsulphate kinase dNK PF01712.14 gi|325968841|ref|YP_004245033.1| - 0.092 12.6 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Deoxynucleoside kinase DUF2075 PF09848.4 gi|325968841|ref|YP_004245033.1| - 0.1 11.5 0.2 0.25 10.2 0.1 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|325968841|ref|YP_004245033.1| - 0.19 11.8 0.7 1.1 9.3 0.5 2.2 1 1 0 1 1 1 0 AAA domain HTH_3 PF01381.17 gi|325968842|ref|YP_004245034.1| - 2.6e-09 36.7 0.0 5.3e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|325968842|ref|YP_004245034.1| - 4.1e-08 33.2 0.0 9.7e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|325968842|ref|YP_004245034.1| - 1.6e-07 31.2 0.0 4.4e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|325968842|ref|YP_004245034.1| - 0.003 17.0 0.0 0.0089 15.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|325968842|ref|YP_004245034.1| - 0.015 14.6 0.2 0.21 10.9 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|325968842|ref|YP_004245034.1| - 0.027 14.1 0.0 0.084 12.5 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_37 PF13744.1 gi|325968842|ref|YP_004245034.1| - 0.04 13.7 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|325968842|ref|YP_004245034.1| - 0.068 12.6 0.1 0.29 10.6 0.0 2.1 2 1 1 3 3 3 0 Sigma-70, region 4 Fer2_3 PF13085.1 gi|325968843|ref|YP_004245035.1| - 2.1e-34 117.6 0.2 3.8e-34 116.8 0.0 1.5 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|325968843|ref|YP_004245035.1| - 2.3e-11 43.5 1.4 2.3e-11 43.5 1.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325968843|ref|YP_004245035.1| - 4.7e-11 42.9 1.2 1.8e-07 31.4 0.2 2.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325968843|ref|YP_004245035.1| - 4.9e-09 36.3 1.0 4.9e-09 36.3 0.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325968843|ref|YP_004245035.1| - 1.1e-08 35.1 1.5 1.1e-08 35.1 1.0 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325968843|ref|YP_004245035.1| - 1.3e-06 28.1 2.1 1.3e-06 28.1 1.5 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325968843|ref|YP_004245035.1| - 1.4e-06 28.5 0.5 1.4e-06 28.5 0.3 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|325968843|ref|YP_004245035.1| - 0.00012 21.5 1.1 0.00012 21.5 0.8 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer2 PF00111.22 gi|325968843|ref|YP_004245035.1| - 0.0002 21.0 0.0 0.0002 21.0 0.0 1.9 3 0 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.1 gi|325968843|ref|YP_004245035.1| - 0.00067 20.3 3.1 0.00067 20.3 2.1 2.5 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|325968843|ref|YP_004245035.1| - 0.0012 19.2 0.9 0.0012 19.2 0.6 2.9 4 0 0 4 4 2 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|325968843|ref|YP_004245035.1| - 0.0013 18.5 1.3 0.0013 18.5 0.9 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325968843|ref|YP_004245035.1| - 0.0028 17.4 3.5 0.042 13.7 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325968843|ref|YP_004245035.1| - 0.0038 17.4 1.7 0.0038 17.4 1.2 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|325968843|ref|YP_004245035.1| - 0.0063 16.3 2.1 0.0063 16.3 1.4 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|325968843|ref|YP_004245035.1| - 0.1 13.1 0.1 0.1 13.1 0.1 2.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|325968843|ref|YP_004245035.1| - 4.9 7.9 21.4 0.69 10.6 2.5 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.17 gi|325968844|ref|YP_004245036.1| - 2.9e-21 75.5 4.5 4.1e-21 75.0 3.1 1.3 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4231 PF14015.1 gi|325968844|ref|YP_004245036.1| - 0.11 12.4 2.2 0.24 11.3 1.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Sdh_cyt PF01127.17 gi|325968845|ref|YP_004245037.1| - 0.00012 21.9 12.2 0.00012 21.9 8.4 1.3 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF3139 PF11337.3 gi|325968845|ref|YP_004245037.1| - 0.4 10.9 3.6 1.1 9.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF1056 PF06341.6 gi|325968845|ref|YP_004245037.1| - 3.2 7.8 6.8 1.1 9.3 2.1 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF1056) Sex_peptide PF08138.6 gi|325968845|ref|YP_004245037.1| - 3.7 7.4 5.0 2 8.3 0.0 2.5 2 1 0 2 2 2 0 Sex peptide (SP) family Aminotran_5 PF00266.14 gi|325968846|ref|YP_004245038.1| - 1.2e-23 83.4 0.0 1.6e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|325968846|ref|YP_004245038.1| - 2.6e-05 22.7 0.0 4.7e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AAA_21 PF13304.1 gi|325968847|ref|YP_004245039.1| - 2.8e-05 24.2 0.3 0.00033 20.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|325968847|ref|YP_004245039.1| - 0.00018 21.8 0.0 0.00025 21.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|325968847|ref|YP_004245039.1| - 0.00072 19.7 0.0 0.26 11.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|325968847|ref|YP_004245039.1| - 0.00091 19.5 0.0 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_19 PF13245.1 gi|325968847|ref|YP_004245039.1| - 0.0011 18.6 0.0 0.0028 17.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain SMC_N PF02463.14 gi|325968847|ref|YP_004245039.1| - 0.0043 16.3 0.0 0.014 14.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|325968847|ref|YP_004245039.1| - 0.013 15.4 0.0 0.041 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|325968847|ref|YP_004245039.1| - 0.014 14.9 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|325968847|ref|YP_004245039.1| - 0.019 15.7 0.0 0.05 14.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|325968847|ref|YP_004245039.1| - 0.031 14.5 0.1 0.1 12.8 0.0 1.8 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|325968847|ref|YP_004245039.1| - 0.049 12.8 0.0 0.075 12.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Arch_ATPase PF01637.13 gi|325968847|ref|YP_004245039.1| - 0.065 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase PadR PF03551.9 gi|325968848|ref|YP_004245040.1| - 1e-18 66.8 0.0 2e-18 65.9 0.0 1.4 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF4364 PF14277.1 gi|325968848|ref|YP_004245040.1| - 1.5e-05 24.7 0.2 6.5e-05 22.5 0.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|325968848|ref|YP_004245040.1| - 9.6e-05 22.0 0.2 0.017 14.8 0.0 2.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF505 PF04458.7 gi|325968848|ref|YP_004245040.1| - 0.00068 17.8 0.0 0.00075 17.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_42 PF06224.7 gi|325968848|ref|YP_004245040.1| - 0.0024 17.2 0.0 0.0026 17.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|325968848|ref|YP_004245040.1| - 0.0042 16.6 0.1 0.53 9.9 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|325968848|ref|YP_004245040.1| - 0.0059 16.9 0.1 0.093 13.0 0.0 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain FUR PF01475.14 gi|325968848|ref|YP_004245040.1| - 0.016 15.0 0.0 0.023 14.6 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family AphA_like PF14557.1 gi|325968848|ref|YP_004245040.1| - 0.051 13.1 0.0 0.056 13.0 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator HTH_45 PF14947.1 gi|325968848|ref|YP_004245040.1| - 0.12 12.2 0.0 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix Aminotran_1_2 PF00155.16 gi|325968849|ref|YP_004245041.1| - 1.7e-31 109.4 0.0 2e-31 109.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DUF1957 PF09210.6 gi|325968849|ref|YP_004245041.1| - 0.076 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) Peptidase_M20 PF01546.23 gi|325968850|ref|YP_004245042.1| - 5.7e-36 123.7 1.5 1.1e-35 122.9 1.0 1.4 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|325968850|ref|YP_004245042.1| - 6.2e-22 77.4 0.0 2.4e-21 75.5 0.0 1.9 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|325968850|ref|YP_004245042.1| - 0.033 13.9 0.0 0.1 12.3 0.0 1.7 2 0 0 2 2 2 0 Peptidase family M28 tRNA_SAD PF07973.9 gi|325968851|ref|YP_004245043.1| - 3.9e-11 42.6 0.6 6.4e-11 41.9 0.1 1.7 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|325968851|ref|YP_004245043.1| - 2.2e-10 39.5 0.0 2.9e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) Minor_capsid_1 PF10665.4 gi|325968851|ref|YP_004245043.1| - 0.08 12.7 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Minor capsid protein Yip1 PF04893.12 gi|325968853|ref|YP_004245045.1| - 0.015 14.8 24.1 0.023 14.2 16.7 1.3 1 0 0 1 1 1 0 Yip1 domain Rer1 PF03248.8 gi|325968853|ref|YP_004245045.1| - 0.056 13.0 1.5 0.43 10.1 0.1 2.2 2 0 0 2 2 2 0 Rer1 family Bunya_G2 PF03563.8 gi|325968853|ref|YP_004245045.1| - 5.6 5.7 12.4 0.043 12.7 1.9 2.0 2 0 0 2 2 2 0 Bunyavirus glycoprotein G2 ABC_tran PF00005.22 gi|325968854|ref|YP_004245046.1| - 9.8e-29 100.3 0.0 1.3e-28 100.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968854|ref|YP_004245046.1| - 4.9e-15 56.2 0.2 3.5e-08 33.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|325968854|ref|YP_004245046.1| - 1.9e-05 24.2 0.5 0.13 11.6 0.1 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|325968854|ref|YP_004245046.1| - 3.2e-05 23.2 0.3 0.089 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|325968854|ref|YP_004245046.1| - 0.00027 20.7 0.1 0.0032 17.3 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|325968854|ref|YP_004245046.1| - 0.0011 18.4 0.1 0.072 12.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|325968854|ref|YP_004245046.1| - 0.0029 17.6 0.4 0.0048 16.9 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|325968854|ref|YP_004245046.1| - 0.0029 18.4 0.0 0.0065 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325968854|ref|YP_004245046.1| - 0.0033 16.9 0.0 0.0059 16.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|325968854|ref|YP_004245046.1| - 0.0054 15.8 0.0 0.063 12.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|325968854|ref|YP_004245046.1| - 0.0071 16.4 1.2 0.12 12.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|325968854|ref|YP_004245046.1| - 0.016 15.5 0.1 0.025 14.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|325968854|ref|YP_004245046.1| - 0.031 14.1 0.1 0.086 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|325968854|ref|YP_004245046.1| - 0.04 14.2 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|325968854|ref|YP_004245046.1| - 0.076 12.9 0.0 0.18 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|325968854|ref|YP_004245046.1| - 0.09 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_24 PF13479.1 gi|325968854|ref|YP_004245046.1| - 0.1 12.1 1.0 0.34 10.4 0.2 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|325968854|ref|YP_004245046.1| - 0.12 11.8 0.0 1.6 8.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|325968854|ref|YP_004245046.1| - 0.12 11.9 0.2 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain CARDB PF07705.6 gi|325968855|ref|YP_004245047.1| - 2.3e-05 24.3 16.8 0.00016 21.6 1.0 4.4 4 1 1 5 5 5 2 CARDB DUF4448 PF14610.1 gi|325968855|ref|YP_004245047.1| - 0.018 14.5 0.4 0.047 13.1 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) DUF11 PF01345.13 gi|325968855|ref|YP_004245047.1| - 4 7.5 15.1 0.12 12.4 0.4 4.1 4 0 0 4 4 4 0 Domain of unknown function DUF11 MacB_PCD PF12704.2 gi|325968856|ref|YP_004245048.1| - 1.5e-18 67.2 5.8 1.5e-18 67.2 4.0 2.9 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|325968856|ref|YP_004245048.1| - 1.3e-15 57.2 18.6 1.3e-15 57.2 12.9 3.1 3 1 0 3 3 3 2 FtsX-like permease family Arch_ATPase PF01637.13 gi|325968857|ref|YP_004245049.1| - 2.2e-18 66.8 0.0 4e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|325968857|ref|YP_004245049.1| - 0.00049 20.2 0.0 0.0031 17.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|325968857|ref|YP_004245049.1| - 0.0029 17.5 0.0 1.1 9.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|325968857|ref|YP_004245049.1| - 0.018 15.8 0.3 0.33 11.7 0.1 2.5 1 1 0 1 1 1 0 AAA domain YajC PF02699.10 gi|325968858|ref|YP_004245050.1| - 0.034 13.8 0.2 0.034 13.8 0.1 1.9 2 0 0 2 2 2 0 Preprotein translocase subunit Sar8_2 PF03058.9 gi|325968858|ref|YP_004245050.1| - 0.081 13.2 0.2 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 Sar8.2 family Myosin_N PF02736.14 gi|325968858|ref|YP_004245050.1| - 0.083 12.5 0.2 0.2 11.3 0.1 1.7 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain DUF1049 PF06305.6 gi|325968858|ref|YP_004245050.1| - 0.33 10.4 8.9 1.8 8.1 1.7 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF2771 PF10969.3 gi|325968858|ref|YP_004245050.1| - 1.4 8.1 4.1 0.68 9.1 1.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2771) DUF1469 PF07332.6 gi|325968858|ref|YP_004245050.1| - 2.3 7.9 12.0 3.2 7.4 1.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF485 PF04341.7 gi|325968858|ref|YP_004245050.1| - 3.1 7.5 12.5 0.048 13.3 0.9 2.6 1 1 0 2 2 2 0 Protein of unknown function, DUF485 Shisa PF13908.1 gi|325968858|ref|YP_004245050.1| - 3.3 7.8 13.3 0.22 11.7 1.1 2.2 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator CRPA PF05745.6 gi|325968858|ref|YP_004245050.1| - 7.5 6.3 12.2 5.7 6.7 1.8 2.3 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF202 PF02656.10 gi|325968858|ref|YP_004245050.1| - 8.7 6.6 11.4 0.79 9.9 0.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Ins_allergen_rp PF06757.8 gi|325968859|ref|YP_004245051.1| - 0.13 11.7 0.1 0.21 11.0 0.0 1.5 1 1 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification NTP_transf_2 PF01909.18 gi|325968860|ref|YP_004245052.1| - 2.8e-07 30.7 0.2 4.3e-07 30.1 0.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|325968861|ref|YP_004245053.1| - 1.2e-18 66.8 2.5 1.5e-18 66.5 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Colicin PF01024.14 gi|325968861|ref|YP_004245053.1| - 0.009 15.6 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 Colicin pore forming domain Sugar_tr PF00083.19 gi|325968862|ref|YP_004245054.1| - 8.8e-51 172.8 27.9 1e-50 172.6 19.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325968862|ref|YP_004245054.1| - 1e-28 100.0 35.0 1e-28 100.0 24.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1129 PF06570.6 gi|325968862|ref|YP_004245054.1| - 0.0081 15.4 0.9 0.0081 15.4 0.6 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF1129) MFS_1_like PF12832.2 gi|325968862|ref|YP_004245054.1| - 0.012 15.3 0.3 0.012 15.3 0.2 3.9 3 1 0 3 3 3 0 MFS_1 like family MFS_2 PF13347.1 gi|325968862|ref|YP_004245054.1| - 0.17 10.2 29.5 0.17 10.2 5.7 3.3 3 0 0 3 3 3 0 MFS/sugar transport protein DUF1435 PF07256.7 gi|325968862|ref|YP_004245054.1| - 0.78 9.7 5.9 1.4 8.9 0.1 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1435) Ribosomal_L5_C PF00673.16 gi|325968863|ref|YP_004245055.1| - 1.1e-20 73.1 0.0 2e-20 72.3 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|325968863|ref|YP_004245055.1| - 5.6e-15 54.8 0.0 8.6e-15 54.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 SBP_bac_5 PF00496.17 gi|325968864|ref|YP_004245056.1| - 1e-59 202.2 3.5 1e-59 202.2 2.4 2.1 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peptidase_S66 PF02016.10 gi|325968865|ref|YP_004245057.1| - 1.2e-72 244.2 0.0 1.4e-72 244.0 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase GATase_6 PF13522.1 gi|325968866|ref|YP_004245058.1| - 9.7e-09 35.2 0.0 1.7e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|325968866|ref|YP_004245058.1| - 0.0024 17.5 0.0 0.0053 16.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|325968866|ref|YP_004245058.1| - 0.068 11.8 0.1 0.11 11.1 0.1 1.5 1 1 0 1 1 1 0 Glutamine amidotransferases class-II Orn_Arg_deC_N PF02784.11 gi|325968867|ref|YP_004245059.1| - 5e-40 137.2 0.0 6.4e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|325968867|ref|YP_004245059.1| - 6.3e-22 77.4 0.0 1.2e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 4HBT PF03061.17 gi|325968868|ref|YP_004245060.1| - 2.3e-15 56.4 0.7 4.1e-15 55.6 0.5 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|325968868|ref|YP_004245060.1| - 1.9e-08 34.4 0.0 2.3e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily CoA_transf_3 PF02515.12 gi|325968869|ref|YP_004245061.1| - 6.8e-48 162.4 0.0 8.8e-48 162.0 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III VitK2_biosynth PF02621.9 gi|325968870|ref|YP_004245062.1| - 8.9e-72 241.2 0.0 1e-71 241.1 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.9 gi|325968871|ref|YP_004245063.1| - 7.1e-34 117.1 0.0 8e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Radical_SAM PF04055.16 gi|325968872|ref|YP_004245064.1| - 1.9e-10 41.1 0.0 3.1e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|325968873|ref|YP_004245065.1| - 2.8e-15 56.8 0.1 4.9e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF905 PF06006.7 gi|325968873|ref|YP_004245065.1| - 0.12 11.7 0.0 0.26 10.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF905) Rieske PF00355.21 gi|325968874|ref|YP_004245066.1| - 7.2e-13 47.9 0.1 7.8e-13 47.8 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|325968874|ref|YP_004245066.1| - 3.3e-07 29.9 0.0 5.3e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain FAD_binding_4 PF01565.18 gi|325968875|ref|YP_004245067.1| - 4.5e-37 126.6 0.2 6.9e-37 126.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.14 gi|325968875|ref|YP_004245067.1| - 2.2e-35 122.1 0.0 2.9e-35 121.7 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FGGY_N PF00370.16 gi|325968876|ref|YP_004245068.1| - 2.4e-26 92.5 0.0 3.5e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|325968876|ref|YP_004245068.1| - 9.5e-25 87.3 0.0 3.9e-24 85.3 0.0 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Pyr_redox_3 PF13738.1 gi|325968877|ref|YP_004245069.1| - 6.4e-09 36.1 0.1 0.0021 18.1 0.1 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|325968877|ref|YP_004245069.1| - 5.6e-08 32.7 0.4 1.4e-07 31.3 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|325968877|ref|YP_004245069.1| - 3.3e-06 27.4 1.1 9.5e-06 25.9 0.2 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|325968877|ref|YP_004245069.1| - 7.9e-05 22.6 0.0 0.00076 19.4 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|325968877|ref|YP_004245069.1| - 0.00015 20.8 2.6 0.00021 20.3 0.6 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|325968877|ref|YP_004245069.1| - 0.00017 20.5 0.1 0.00031 19.7 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|325968877|ref|YP_004245069.1| - 0.00025 20.1 1.2 0.00042 19.4 0.4 1.6 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.7 gi|325968877|ref|YP_004245069.1| - 0.0079 15.1 0.1 0.013 14.4 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|325968877|ref|YP_004245069.1| - 0.013 15.7 0.6 0.094 12.9 0.1 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding GIDA PF01134.17 gi|325968877|ref|YP_004245069.1| - 0.034 13.0 0.1 0.053 12.3 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|325968877|ref|YP_004245069.1| - 0.047 12.7 0.4 0.072 12.1 0.3 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Glyco_transf_4 PF13439.1 gi|325968877|ref|YP_004245069.1| - 0.059 13.0 0.2 0.6 9.8 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.15 gi|325968877|ref|YP_004245069.1| - 0.082 12.6 0.1 1.8 8.3 0.0 2.4 2 1 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain TrkA_N PF02254.13 gi|325968877|ref|YP_004245069.1| - 0.18 11.8 3.0 7.8 6.5 0.1 2.8 3 1 0 3 3 3 0 TrkA-N domain DAO PF01266.19 gi|325968878|ref|YP_004245070.1| - 5.8e-49 166.9 0.0 1.6e-48 165.4 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|325968878|ref|YP_004245070.1| - 7e-09 36.0 0.0 0.00039 20.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|325968878|ref|YP_004245070.1| - 1.9e-07 29.9 0.0 0.0013 17.2 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Fer2_BFD PF04324.10 gi|325968878|ref|YP_004245070.1| - 2.6e-07 30.5 1.6 4.7e-07 29.7 1.1 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.14 gi|325968878|ref|YP_004245070.1| - 2.9e-07 29.8 0.1 7.9e-05 21.8 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.22 gi|325968878|ref|YP_004245070.1| - 1.2e-06 28.8 0.4 0.025 14.9 0.2 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|325968878|ref|YP_004245070.1| - 6.9e-06 25.3 0.3 4.6e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|325968878|ref|YP_004245070.1| - 1.4e-05 24.2 0.0 0.0042 16.0 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|325968878|ref|YP_004245070.1| - 1.9e-05 24.5 0.4 5.4e-05 23.1 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|325968878|ref|YP_004245070.1| - 0.00011 22.1 0.1 0.00023 21.1 0.0 1.5 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|325968878|ref|YP_004245070.1| - 0.00039 19.3 0.1 0.00085 18.2 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|325968878|ref|YP_004245070.1| - 0.0012 18.2 0.1 0.0019 17.6 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|325968878|ref|YP_004245070.1| - 0.015 14.6 0.1 0.025 14.0 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|325968878|ref|YP_004245070.1| - 0.023 14.3 0.2 0.041 13.5 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1145 PF06611.7 gi|325968878|ref|YP_004245070.1| - 0.034 13.7 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1145) NAD_binding_9 PF13454.1 gi|325968878|ref|YP_004245070.1| - 0.16 11.7 0.3 0.61 9.8 0.2 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding Phosphoesterase PF04185.9 gi|325968879|ref|YP_004245071.1| - 2.7e-65 221.0 2.0 5.5e-65 219.9 1.4 1.5 1 1 0 1 1 1 1 Phosphoesterase family FtsX PF02687.16 gi|325968881|ref|YP_004245073.1| - 0.21 11.3 10.3 0.12 12.1 2.3 2.2 2 0 0 2 2 2 0 FtsX-like permease family DUF1056 PF06341.6 gi|325968882|ref|YP_004245074.1| - 0.055 13.5 1.4 0.098 12.6 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1056) ADC PF06314.6 gi|325968883|ref|YP_004245075.1| - 2.5e-42 144.8 0.0 3.1e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Acyl-CoA_dh_1 PF00441.19 gi|325968884|ref|YP_004245076.1| - 7.7e-27 94.2 0.5 1.2e-26 93.6 0.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|325968884|ref|YP_004245076.1| - 4.4e-14 52.8 0.3 7.8e-14 52.0 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|325968884|ref|YP_004245076.1| - 3.5e-11 43.6 0.0 6.8e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|325968884|ref|YP_004245076.1| - 1.6e-07 30.7 0.0 4.7e-07 29.2 0.0 1.8 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Rieske PF00355.21 gi|325968884|ref|YP_004245076.1| - 0.16 11.5 0.0 0.31 10.6 0.0 1.4 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain SCP2 PF02036.12 gi|325968885|ref|YP_004245077.1| - 0.00013 22.2 0.0 0.00029 21.1 0.0 1.8 1 1 0 1 1 1 1 SCP-2 sterol transfer family ADH_N PF08240.7 gi|325968886|ref|YP_004245078.1| - 1.4e-30 105.2 0.0 2.1e-30 104.6 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|325968886|ref|YP_004245078.1| - 1.6e-28 98.8 0.0 5.6e-28 97.0 0.0 1.9 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|325968886|ref|YP_004245078.1| - 5.2e-08 33.8 0.0 1.2e-07 32.6 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|325968886|ref|YP_004245078.1| - 5.5e-05 22.8 0.0 8.6e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|325968886|ref|YP_004245078.1| - 0.015 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|325968886|ref|YP_004245078.1| - 0.019 14.0 0.1 0.033 13.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TPP_enzyme_N PF02776.13 gi|325968887|ref|YP_004245079.1| - 9.4e-52 174.9 0.3 1.3e-50 171.2 0.0 2.6 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|325968887|ref|YP_004245079.1| - 1.3e-38 131.7 0.0 3.8e-37 127.0 0.0 2.8 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|325968887|ref|YP_004245079.1| - 5.4e-36 123.4 0.1 2.2e-35 121.5 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP_methylase PF00590.15 gi|325968887|ref|YP_004245079.1| - 0.00011 21.9 1.5 0.12 12.0 0.0 2.7 3 0 0 3 3 3 2 Tetrapyrrole (Corrin/Porphyrin) Methylases 2-Hacid_dh_C PF02826.14 gi|325968888|ref|YP_004245080.1| - 9.5e-54 181.2 0.0 2.6e-53 179.8 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|325968888|ref|YP_004245080.1| - 1.6e-27 95.6 0.0 1.8e-27 95.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|325968888|ref|YP_004245080.1| - 8.8e-06 25.8 0.0 0.18 11.9 0.0 2.2 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|325968888|ref|YP_004245080.1| - 0.0006 19.6 0.1 0.0017 18.2 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|325968888|ref|YP_004245080.1| - 0.13 12.3 0.5 34 4.5 0.3 3.0 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase SCP2 PF02036.12 gi|325968889|ref|YP_004245081.1| - 2.5e-12 46.9 0.0 2.9e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.1 gi|325968889|ref|YP_004245081.1| - 1e-06 28.7 0.0 1.3e-06 28.4 0.0 1.2 1 1 0 1 1 1 1 Alkyl sulfatase C-terminal Ribonuc_L-PSP PF01042.16 gi|325968889|ref|YP_004245081.1| - 0.085 12.6 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 Endoribonuclease L-PSP 3HCDH_N PF02737.13 gi|325968890|ref|YP_004245082.1| - 4.4e-71 238.2 0.8 6.1e-71 237.7 0.6 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|325968890|ref|YP_004245082.1| - 1.8e-67 227.0 0.0 3.4e-67 226.1 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|325968890|ref|YP_004245082.1| - 8.1e-51 170.4 0.3 1.6e-24 86.0 0.0 3.8 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.10 gi|325968890|ref|YP_004245082.1| - 5.2e-07 29.6 0.1 1.3e-06 28.3 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|325968890|ref|YP_004245082.1| - 8.6e-07 28.8 0.2 1.6e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|325968890|ref|YP_004245082.1| - 3.7e-06 27.2 0.3 1.1e-05 25.8 0.2 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|325968890|ref|YP_004245082.1| - 3.4e-05 23.3 0.2 5.8e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|325968890|ref|YP_004245082.1| - 0.012 15.1 0.1 0.024 14.1 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.9 gi|325968890|ref|YP_004245082.1| - 0.023 14.5 0.0 0.04 13.7 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|325968890|ref|YP_004245082.1| - 0.046 14.0 0.0 0.097 12.9 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.13 gi|325968890|ref|YP_004245082.1| - 0.048 13.6 0.1 0.13 12.2 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox PF00070.22 gi|325968890|ref|YP_004245082.1| - 0.057 13.8 0.2 0.46 10.9 0.4 2.4 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|325968890|ref|YP_004245082.1| - 0.07 12.2 0.1 0.16 11.1 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|325968890|ref|YP_004245082.1| - 0.095 12.9 0.2 0.22 11.7 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding DAO PF01266.19 gi|325968890|ref|YP_004245082.1| - 0.28 10.0 1.4 0.42 9.4 1.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thiolase_N PF00108.18 gi|325968891|ref|YP_004245083.1| - 8.4e-11 41.3 0.1 4.8e-08 32.3 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|325968891|ref|YP_004245083.1| - 1.5e-08 34.0 0.1 9.8e-07 28.2 0.1 2.9 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|325968891|ref|YP_004245083.1| - 4.5e-05 23.0 4.8 0.0017 17.8 1.2 2.8 1 1 1 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|325968891|ref|YP_004245083.1| - 0.0048 16.5 0.5 0.13 11.9 0.3 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|325968891|ref|YP_004245083.1| - 0.024 14.4 0.0 8.5 6.2 0.0 2.9 2 0 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|325968892|ref|YP_004245084.1| - 6.2e-13 48.7 0.3 9.4e-13 48.2 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|325968892|ref|YP_004245084.1| - 1.1e-11 44.2 2.3 2.1e-11 43.3 1.6 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ECH PF00378.15 gi|325968893|ref|YP_004245085.1| - 7.4e-50 169.3 0.0 8.3e-50 169.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|325968893|ref|YP_004245085.1| - 0.012 15.6 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 2-enoyl-CoA Hydratase C-terminal region Smr PF01713.16 gi|325968893|ref|YP_004245085.1| - 0.074 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Smr domain Amidohydro_2 PF04909.9 gi|325968894|ref|YP_004245086.1| - 5.1e-23 82.0 0.1 2.1e-22 79.9 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|325968894|ref|YP_004245086.1| - 0.017 14.3 0.0 0.039 13.1 0.0 1.6 1 0 0 1 1 1 0 TatD related DNase CN_hydrolase PF00795.17 gi|325968894|ref|YP_004245086.1| - 0.038 13.3 0.0 0.44 9.8 0.0 2.1 1 1 1 2 2 2 0 Carbon-nitrogen hydrolase Lactamase_B PF00753.22 gi|325968895|ref|YP_004245087.1| - 8.9e-08 32.0 0.0 9.7e-08 31.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily TPR_8 PF13181.1 gi|325968895|ref|YP_004245087.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat AMP-binding PF00501.23 gi|325968896|ref|YP_004245088.1| - 2.9e-77 259.8 0.0 3.4e-77 259.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325968896|ref|YP_004245088.1| - 5.6e-18 65.6 0.0 1e-17 64.8 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain APC2 PF08672.6 gi|325968896|ref|YP_004245088.1| - 0.16 12.2 0.0 0.35 11.1 0.0 1.5 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 Methyltransf_11 PF08241.7 gi|325968897|ref|YP_004245089.1| - 4.5e-15 55.9 0.0 7.2e-15 55.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|325968897|ref|YP_004245089.1| - 1.4e-09 38.2 0.0 2.9e-09 37.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325968897|ref|YP_004245089.1| - 2.5e-09 37.0 0.0 3.1e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968897|ref|YP_004245089.1| - 2.9e-06 26.9 0.0 6.7e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|325968897|ref|YP_004245089.1| - 9.8e-06 25.8 0.0 2e-05 24.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|325968897|ref|YP_004245089.1| - 0.00091 18.9 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|325968897|ref|YP_004245089.1| - 0.0035 17.3 0.1 0.011 15.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|325968897|ref|YP_004245089.1| - 0.0094 15.0 0.0 0.015 14.3 0.0 1.3 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.14 gi|325968897|ref|YP_004245089.1| - 0.01 15.7 0.0 0.09 12.7 0.0 2.0 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.6 gi|325968897|ref|YP_004245089.1| - 0.024 13.3 0.0 0.59 8.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) Methyltransf_18 PF12847.2 gi|325968897|ref|YP_004245089.1| - 0.054 14.0 0.2 0.2 12.2 0.1 1.9 1 1 0 1 1 1 0 Methyltransferase domain T_cell_tran_alt PF15128.1 gi|325968899|ref|YP_004245091.1| - 7.1 6.1 9.1 1.5 8.3 0.1 2.6 3 0 0 3 3 3 0 T-cell leukemia translocation-altered SWIM PF04434.12 gi|325968900|ref|YP_004245092.1| - 0.0018 17.7 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger TF_Zn_Ribbon PF08271.7 gi|325968901|ref|YP_004245093.1| - 7.9e-05 21.9 2.6 0.00013 21.2 1.8 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|325968901|ref|YP_004245093.1| - 0.00021 21.5 0.0 0.00027 21.1 0.0 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Ribosomal_S27 PF01599.14 gi|325968901|ref|YP_004245093.1| - 0.0021 17.8 0.7 0.003 17.3 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a zf-TFIIB PF13453.1 gi|325968901|ref|YP_004245093.1| - 0.0029 16.7 1.3 0.0044 16.1 0.9 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.11 gi|325968901|ref|YP_004245093.1| - 0.0048 16.5 0.3 0.0099 15.5 0.2 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Elf1 PF05129.8 gi|325968901|ref|YP_004245093.1| - 0.0086 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-NADH-PPase PF09297.6 gi|325968901|ref|YP_004245093.1| - 0.01 15.2 1.2 0.14 11.6 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|325968901|ref|YP_004245093.1| - 0.022 14.5 0.3 0.043 13.6 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|325968901|ref|YP_004245093.1| - 0.031 13.9 0.5 3.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|325968901|ref|YP_004245093.1| - 0.04 13.5 0.2 0.056 13.0 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ribosomal_L37e PF01907.14 gi|325968901|ref|YP_004245093.1| - 0.13 12.1 1.1 1.4 8.7 0.0 2.0 1 1 0 1 1 1 0 Ribosomal protein L37e Mu-like_Com PF10122.4 gi|325968901|ref|YP_004245093.1| - 0.14 11.2 3.7 3 6.9 0.2 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-Mss51 PF13824.1 gi|325968901|ref|YP_004245093.1| - 0.15 11.9 0.5 3.1 7.7 0.0 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.2 gi|325968901|ref|YP_004245093.1| - 0.15 11.8 3.0 14 5.5 2.1 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|325968901|ref|YP_004245093.1| - 0.16 11.5 1.6 10 5.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.1 gi|325968901|ref|YP_004245093.1| - 0.22 11.3 1.1 0.33 10.7 0.8 1.3 1 0 0 1 1 1 0 YhfH-like protein zf-CSL PF05207.8 gi|325968901|ref|YP_004245093.1| - 0.46 10.0 3.2 2.8 7.5 2.2 2.0 1 1 0 1 1 1 0 CSL zinc finger zf-ribbon_3 PF13248.1 gi|325968901|ref|YP_004245093.1| - 1.5 8.1 4.8 15 4.9 3.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Inositol_P PF00459.20 gi|325968902|ref|YP_004245094.1| - 4.8e-17 62.1 0.0 2e-16 60.1 0.0 1.7 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|325968902|ref|YP_004245094.1| - 0.0021 16.9 0.0 0.0032 16.3 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Metallophos_2 PF12850.2 gi|325968903|ref|YP_004245095.1| - 4.7e-08 33.0 0.0 1.6e-06 28.0 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|325968903|ref|YP_004245095.1| - 6.1e-07 29.0 0.0 0.00059 19.2 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|325968903|ref|YP_004245095.1| - 1.1e-05 24.6 0.6 0.2 10.7 0.0 3.0 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily PBCV_basic_adap PF08789.5 gi|325968903|ref|YP_004245095.1| - 0.21 11.3 0.0 0.21 11.3 0.0 2.6 3 0 0 3 3 3 0 PBCV-specific basic adaptor domain Arch_ATPase PF01637.13 gi|325968904|ref|YP_004245096.1| - 0.14 11.8 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Archaeal ATPase DUF2276 PF10040.4 gi|325968905|ref|YP_004245097.1| - 3.7e-15 56.1 0.1 6.7e-15 55.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HD PF01966.17 gi|325968906|ref|YP_004245098.1| - 3.5e-06 27.0 0.3 6.1e-06 26.2 0.2 1.6 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|325968906|ref|YP_004245098.1| - 0.033 13.4 0.0 0.053 12.7 0.0 1.3 1 0 0 1 1 1 0 HDOD domain Helicase_C PF00271.26 gi|325968907|ref|YP_004245099.1| - 1.4e-13 50.5 0.1 2.9e-12 46.2 0.0 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|325968907|ref|YP_004245099.1| - 8.7e-13 48.0 0.0 1.6e-09 37.5 0.0 2.9 2 1 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|325968907|ref|YP_004245099.1| - 2.6e-07 30.6 0.0 3.1e-06 27.1 0.0 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DUF1351 PF07083.6 gi|325968908|ref|YP_004245100.1| - 0.0028 17.3 0.3 0.0051 16.4 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1351) Cas_Cas5d PF09704.5 gi|325968909|ref|YP_004245101.1| - 0.019 14.6 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) Complex1_49kDa PF00346.14 gi|325968909|ref|YP_004245101.1| - 0.068 12.1 0.1 0.092 11.7 0.1 1.2 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DevR PF01905.11 gi|325968910|ref|YP_004245102.1| - 3e-67 226.3 0.0 3.6e-67 226.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Orthopox_B11R PF07033.6 gi|325968910|ref|YP_004245102.1| - 0.0039 16.6 0.0 0.0082 15.5 0.0 1.6 1 0 0 1 1 1 1 Orthopoxvirus B11R protein HEAT_2 PF13646.1 gi|325968911|ref|YP_004245103.1| - 0.013 15.7 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 HEAT repeats Peptidase_MA_2 PF13485.1 gi|325968911|ref|YP_004245103.1| - 0.12 12.4 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Peptidase MA superfamily Penicillinase_R PF03965.11 gi|325968912|ref|YP_004245104.1| - 0.018 15.1 0.2 0.035 14.1 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor Rio2_N PF09202.6 gi|325968912|ref|YP_004245104.1| - 0.078 13.0 0.3 0.16 12.0 0.2 1.5 1 0 0 1 1 1 0 Rio2, N-terminal Cas_Cas4 PF01930.12 gi|325968913|ref|YP_004245105.1| - 5.1e-18 65.5 2.6 6.9e-18 65.0 1.8 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|325968913|ref|YP_004245105.1| - 2.7e-11 43.3 0.3 8.5e-10 38.4 0.0 2.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|325968913|ref|YP_004245105.1| - 0.00091 18.5 0.2 0.0016 17.7 0.1 1.4 1 1 0 1 1 1 1 Archaeal protein of unknown function (DUF911) NERD PF08378.6 gi|325968913|ref|YP_004245105.1| - 0.023 14.9 0.2 0.034 14.4 0.1 1.4 1 1 0 1 1 1 0 Nuclease-related domain CRISPR_Cas2 PF09827.4 gi|325968914|ref|YP_004245106.1| - 4.9e-13 49.0 0.3 5.5e-13 48.8 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|325968915|ref|YP_004245107.1| - 7e-65 218.8 0.1 8.6e-65 218.6 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF911 PF06023.7 gi|325968916|ref|YP_004245108.1| - 1.9e-59 201.2 0.0 9.6e-58 195.6 0.0 2.0 1 1 0 1 1 1 1 Archaeal protein of unknown function (DUF911) Cas_Cas4 PF01930.12 gi|325968916|ref|YP_004245108.1| - 0.0099 15.8 0.0 1.9 8.3 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|325968916|ref|YP_004245108.1| - 0.013 14.8 0.0 0.59 9.4 0.0 2.1 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Dna2 PF08696.6 gi|325968916|ref|YP_004245108.1| - 0.13 11.5 0.0 0.28 10.4 0.0 1.6 2 0 0 2 2 2 0 DNA replication factor Dna2 HTH_19 PF12844.2 gi|325968917|ref|YP_004245109.1| - 0.055 13.5 0.2 0.48 10.5 0.2 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain E3_binding PF02817.12 gi|325968917|ref|YP_004245109.1| - 0.13 11.9 0.4 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 e3 binding domain PIN PF01850.16 gi|325968918|ref|YP_004245110.1| - 3.6e-14 53.1 4.1 4.1e-14 52.9 2.9 1.0 1 0 0 1 1 1 1 PIN domain UPF0181 PF03701.9 gi|325968918|ref|YP_004245110.1| - 0.14 11.4 0.1 0.6 9.4 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0181) Arch_ATPase PF01637.13 gi|325968919|ref|YP_004245111.1| - 1.8e-23 83.4 0.2 5.3e-23 81.9 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|325968919|ref|YP_004245111.1| - 1.4e-08 34.6 0.0 6.1e-08 32.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|325968919|ref|YP_004245111.1| - 1.3e-06 28.6 0.0 3e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325968919|ref|YP_004245111.1| - 0.0024 17.8 0.1 0.023 14.6 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|325968919|ref|YP_004245111.1| - 0.0074 16.4 0.1 0.022 14.9 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|325968919|ref|YP_004245111.1| - 0.084 13.6 0.1 0.3 11.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|325968920|ref|YP_004245112.1| - 1.1e-45 155.3 0.1 1.2e-45 155.2 0.1 1.0 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|325968920|ref|YP_004245112.1| - 4.8e-08 33.8 0.0 6.7e-08 33.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|325968920|ref|YP_004245112.1| - 3.5e-07 30.4 0.0 7e-07 29.5 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|325968920|ref|YP_004245112.1| - 3.1e-06 27.2 0.3 7.2e-06 26.1 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|325968920|ref|YP_004245112.1| - 3.9e-06 26.6 0.3 0.0038 16.9 0.0 2.6 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|325968920|ref|YP_004245112.1| - 7e-06 25.7 0.1 1.5e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|325968920|ref|YP_004245112.1| - 1.2e-05 25.4 0.0 5.3e-05 23.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|325968920|ref|YP_004245112.1| - 1.3e-05 24.8 1.4 2.6e-05 23.8 0.2 2.0 2 0 0 2 2 2 1 Part of AAA domain AAA_28 PF13521.1 gi|325968920|ref|YP_004245112.1| - 1.7e-05 24.8 0.2 8.9e-05 22.5 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|325968920|ref|YP_004245112.1| - 0.0001 22.6 0.1 0.00015 22.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|325968920|ref|YP_004245112.1| - 0.00014 21.5 0.1 0.0013 18.3 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF2478 PF10649.4 gi|325968920|ref|YP_004245112.1| - 0.00022 20.6 0.0 0.00068 19.0 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) NACHT PF05729.7 gi|325968920|ref|YP_004245112.1| - 0.00042 20.0 0.0 0.00067 19.3 0.0 1.3 1 0 0 1 1 1 1 NACHT domain ATP_bind_1 PF03029.12 gi|325968920|ref|YP_004245112.1| - 0.00089 18.8 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_33 PF13671.1 gi|325968920|ref|YP_004245112.1| - 0.0013 18.6 0.1 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|325968920|ref|YP_004245112.1| - 0.0015 17.3 0.5 0.0024 16.6 0.3 1.4 1 1 0 1 1 1 1 ArgK protein AAA_24 PF13479.1 gi|325968920|ref|YP_004245112.1| - 0.0016 18.0 0.0 0.0038 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|325968920|ref|YP_004245112.1| - 0.0038 17.1 0.1 0.0054 16.6 0.1 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|325968920|ref|YP_004245112.1| - 0.0042 16.9 0.0 0.031 14.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|325968920|ref|YP_004245112.1| - 0.0043 16.4 0.0 0.036 13.5 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein RuvB_N PF05496.7 gi|325968920|ref|YP_004245112.1| - 0.0044 16.0 0.1 0.024 13.7 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus cobW PF02492.14 gi|325968920|ref|YP_004245112.1| - 0.0047 16.3 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|325968920|ref|YP_004245112.1| - 0.0062 16.0 0.0 0.0091 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain Miro PF08477.8 gi|325968920|ref|YP_004245112.1| - 0.011 16.2 0.0 0.016 15.7 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|325968920|ref|YP_004245112.1| - 0.011 15.1 0.2 0.051 12.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|325968920|ref|YP_004245112.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.6 1 1 1 2 2 2 0 Archaeal ATPase Sigma54_activat PF00158.21 gi|325968920|ref|YP_004245112.1| - 0.016 14.7 0.0 0.26 10.7 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|325968920|ref|YP_004245112.1| - 0.017 14.6 0.0 0.092 12.2 0.0 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase KTI12 PF08433.5 gi|325968920|ref|YP_004245112.1| - 0.017 14.3 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 KaiC PF06745.8 gi|325968920|ref|YP_004245112.1| - 0.017 14.2 0.0 0.035 13.2 0.0 1.4 1 1 0 1 1 1 0 KaiC dUTPase_2 PF08761.6 gi|325968920|ref|YP_004245112.1| - 0.04 14.0 0.0 0.046 13.8 0.0 1.2 1 0 0 1 1 1 0 dUTPase RNA_helicase PF00910.17 gi|325968920|ref|YP_004245112.1| - 0.048 13.8 0.0 0.09 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|325968920|ref|YP_004245112.1| - 0.051 13.0 0.0 0.18 11.3 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|325968920|ref|YP_004245112.1| - 0.058 12.5 0.0 0.2 10.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_3 PF07726.6 gi|325968920|ref|YP_004245112.1| - 0.076 12.6 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|325968920|ref|YP_004245112.1| - 0.089 11.9 0.0 0.19 10.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NB-ARC PF00931.17 gi|325968920|ref|YP_004245112.1| - 0.093 11.5 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.17 gi|325968920|ref|YP_004245112.1| - 0.12 11.7 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MutS_V PF00488.16 gi|325968920|ref|YP_004245112.1| - 0.14 11.5 0.0 8.5 5.7 0.0 2.2 2 0 0 2 2 2 0 MutS domain V PhoU PF01895.14 gi|325968923|ref|YP_004245115.1| - 1.6e-20 73.2 5.2 3.6e-15 56.1 0.3 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|325968923|ref|YP_004245115.1| - 2.7e-08 33.3 0.0 1.2e-07 31.3 0.0 2.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Methyltransf_11 PF08241.7 gi|325968924|ref|YP_004245116.1| - 1.7e-14 54.0 0.0 3.3e-13 49.9 0.0 2.6 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325968924|ref|YP_004245116.1| - 4.8e-09 36.1 0.0 7.6e-09 35.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|325968924|ref|YP_004245116.1| - 5.8e-07 28.8 0.0 9.9e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|325968924|ref|YP_004245116.1| - 0.00015 22.2 0.0 0.00036 20.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968924|ref|YP_004245116.1| - 0.00049 19.7 0.0 0.00066 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|325968924|ref|YP_004245116.1| - 0.0043 16.7 0.0 0.013 15.1 0.0 1.6 1 1 1 2 2 2 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|325968924|ref|YP_004245116.1| - 0.0053 15.1 0.0 0.012 13.9 0.0 1.5 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.2 gi|325968924|ref|YP_004245116.1| - 0.026 15.1 0.0 0.06 13.9 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain MerR_1 PF13411.1 gi|325968924|ref|YP_004245116.1| - 0.044 13.5 0.0 0.13 12.0 0.0 1.8 1 1 0 1 1 1 0 MerR HTH family regulatory protein MetW PF07021.7 gi|325968924|ref|YP_004245116.1| - 0.094 12.0 0.0 0.22 10.8 0.0 1.7 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0051 PF01458.12 gi|325968925|ref|YP_004245117.1| - 3.5e-34 118.2 0.0 4.7e-34 117.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|325968926|ref|YP_004245118.1| - 1.3e-60 204.6 0.0 1.7e-60 204.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|325968927|ref|YP_004245119.1| - 8.6e-58 195.4 0.0 1.1e-57 195.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|325968928|ref|YP_004245120.1| - 4.3e-22 78.8 0.0 5.8e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968928|ref|YP_004245120.1| - 4.1e-12 46.6 0.0 7.8e-06 26.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325968928|ref|YP_004245120.1| - 7.4e-07 28.6 0.0 0.033 13.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|325968928|ref|YP_004245120.1| - 0.00052 20.4 0.1 0.00075 19.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|325968928|ref|YP_004245120.1| - 0.00069 19.5 0.0 0.0011 18.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325968928|ref|YP_004245120.1| - 0.0007 19.0 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|325968928|ref|YP_004245120.1| - 0.0012 18.2 0.1 0.0057 16.0 0.0 2.1 3 0 0 3 3 3 1 AAA domain MutS_V PF00488.16 gi|325968928|ref|YP_004245120.1| - 0.0018 17.7 0.1 0.3 10.4 0.0 2.1 2 0 0 2 2 2 1 MutS domain V cobW PF02492.14 gi|325968928|ref|YP_004245120.1| - 0.0064 15.9 0.0 0.016 14.6 0.0 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|325968928|ref|YP_004245120.1| - 0.0098 14.7 0.0 0.052 12.3 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_15 PF13175.1 gi|325968928|ref|YP_004245120.1| - 0.013 14.5 0.0 2.4 7.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|325968928|ref|YP_004245120.1| - 0.015 15.4 0.0 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|325968928|ref|YP_004245120.1| - 0.023 13.2 0.0 0.56 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|325968928|ref|YP_004245120.1| - 0.041 13.7 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|325968928|ref|YP_004245120.1| - 0.053 13.2 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|325968928|ref|YP_004245120.1| - 0.054 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|325968928|ref|YP_004245120.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|325968928|ref|YP_004245120.1| - 0.069 13.9 0.0 0.14 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|325968928|ref|YP_004245120.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|325968928|ref|YP_004245120.1| - 0.11 11.7 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|325968928|ref|YP_004245120.1| - 0.11 12.4 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|325968928|ref|YP_004245120.1| - 0.12 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|325968928|ref|YP_004245120.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|325968928|ref|YP_004245120.1| - 0.24 11.2 1.4 0.44 10.3 0.1 2.1 2 1 0 2 2 2 0 Part of AAA domain Amidohydro_4 PF13147.1 gi|325968929|ref|YP_004245121.1| - 3.5e-14 53.4 0.3 7.4e-14 52.4 0.2 1.5 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|325968929|ref|YP_004245121.1| - 1.5e-11 44.5 0.0 2.5e-11 43.8 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|325968929|ref|YP_004245121.1| - 9.9e-08 31.6 0.0 2.2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.16 gi|325968929|ref|YP_004245121.1| - 0.082 12.0 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 TatD related DNase Antitoxin-MazE PF04014.13 gi|325968930|ref|YP_004245122.1| - 0.00017 21.2 0.8 0.085 12.6 0.0 2.7 2 2 0 2 2 2 2 Antidote-toxin recognition MazE Ax_dynein_light PF10211.4 gi|325968930|ref|YP_004245122.1| - 0.044 13.6 0.0 0.058 13.2 0.0 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain LysE PF01810.13 gi|325968931|ref|YP_004245123.1| - 2.4e-28 98.7 20.4 2.7e-28 98.5 14.1 1.0 1 0 0 1 1 1 1 LysE type translocator DUF3817 PF12823.2 gi|325968931|ref|YP_004245123.1| - 0.054 13.9 1.0 0.054 13.9 0.7 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF3817) ABC2_membrane_5 PF13346.1 gi|325968931|ref|YP_004245123.1| - 0.57 9.4 20.5 0.81 8.9 14.2 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein GATase PF00117.23 gi|325968932|ref|YP_004245124.1| - 3.1e-55 186.6 0.0 3.6e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|325968932|ref|YP_004245124.1| - 1.6e-15 57.1 0.0 2.5e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|325968933|ref|YP_004245125.1| - 5.7e-87 291.2 0.0 7e-87 290.9 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|325968933|ref|YP_004245125.1| - 1.2e-07 31.8 0.1 9.9e-07 28.8 0.0 2.2 1 1 0 1 1 1 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|325968934|ref|YP_004245126.1| - 1.3e-25 90.1 0.0 1.5e-25 89.9 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.16 gi|325968935|ref|YP_004245127.1| - 7e-80 268.0 0.0 9.6e-80 267.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|325968935|ref|YP_004245127.1| - 1.4e-14 53.3 1.7 1.5e-14 53.3 0.2 1.8 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PALP PF00291.20 gi|325968936|ref|YP_004245128.1| - 2e-41 142.2 0.0 2.3e-41 142.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|325968937|ref|YP_004245129.1| - 1.4e-26 92.5 0.1 2.5e-26 91.7 0.1 1.3 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|325968937|ref|YP_004245129.1| - 3.7e-07 29.6 0.1 8.1e-07 28.5 0.0 1.6 2 0 0 2 2 2 1 PcrB family NanE PF04131.9 gi|325968937|ref|YP_004245129.1| - 0.00019 20.4 0.1 0.00035 19.5 0.0 1.4 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|325968937|ref|YP_004245129.1| - 0.0013 17.7 0.1 0.0019 17.1 0.1 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|325968937|ref|YP_004245129.1| - 0.0027 17.0 0.1 0.005 16.1 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein IGPS PF00218.16 gi|325968937|ref|YP_004245129.1| - 0.025 13.6 0.0 0.047 12.7 0.0 1.4 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase IGPS PF00218.16 gi|325968938|ref|YP_004245130.1| - 1.1e-49 168.8 0.0 1.2e-49 168.6 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|325968938|ref|YP_004245130.1| - 0.00095 18.4 0.3 0.0016 17.7 0.2 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|325968938|ref|YP_004245130.1| - 0.0015 17.5 0.0 0.0031 16.5 0.0 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.9 gi|325968938|ref|YP_004245130.1| - 0.0038 16.2 0.1 0.0067 15.4 0.1 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ADH_zinc_N PF00107.21 gi|325968938|ref|YP_004245130.1| - 0.017 14.6 0.0 0.058 12.9 0.0 1.8 1 1 1 2 2 2 0 Zinc-binding dehydrogenase FMN_dh PF01070.13 gi|325968938|ref|YP_004245130.1| - 0.037 12.8 0.2 0.045 12.5 0.2 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase PcrB PF01884.12 gi|325968938|ref|YP_004245130.1| - 0.039 13.2 0.2 0.058 12.6 0.2 1.2 1 0 0 1 1 1 0 PcrB family POR PF01558.13 gi|325968939|ref|YP_004245131.1| - 8.7e-13 48.5 0.0 9.1e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase EPSP_synthase PF00275.15 gi|325968940|ref|YP_004245132.1| - 3.8e-74 249.6 0.0 4.4e-74 249.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Transketolase_N PF00456.16 gi|325968941|ref|YP_004245133.1| - 9.2e-45 152.8 0.0 1.5e-44 152.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.19 gi|325968941|ref|YP_004245133.1| - 1.2e-36 125.8 0.0 5.1e-35 120.5 0.0 2.6 3 0 0 3 3 3 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|325968941|ref|YP_004245133.1| - 4.8e-20 71.7 0.0 8.5e-20 70.9 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|325968941|ref|YP_004245133.1| - 1.5e-07 31.0 0.6 9e-06 25.3 0.1 3.4 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|325968941|ref|YP_004245133.1| - 5.1e-07 28.9 0.0 0.00029 19.8 0.0 2.3 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|325968941|ref|YP_004245133.1| - 0.0071 15.1 0.0 0.011 14.4 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component Radical_SAM PF04055.16 gi|325968941|ref|YP_004245133.1| - 0.13 12.3 0.1 1.6 8.8 0.0 2.4 2 0 0 2 2 2 0 Radical SAM superfamily GHMP_kinases_N PF00288.21 gi|325968942|ref|YP_004245134.1| - 7.6e-12 45.1 1.1 1.6e-11 44.0 0.7 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|325968942|ref|YP_004245134.1| - 0.00057 20.0 0.7 0.002 18.2 0.1 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal DHquinase_I PF01487.10 gi|325968943|ref|YP_004245135.1| - 9.7e-11 41.7 0.2 2.8e-09 36.9 0.2 2.1 1 1 0 1 1 1 1 Type I 3-dehydroquinase Shikimate_dh_N PF08501.6 gi|325968944|ref|YP_004245136.1| - 3.4e-25 87.8 0.0 6e-25 87.1 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|325968944|ref|YP_004245136.1| - 3.2e-12 46.7 0.0 4.9e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|325968944|ref|YP_004245136.1| - 0.0022 17.0 0.0 0.0081 15.1 0.0 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase Pyr_redox PF00070.22 gi|325968944|ref|YP_004245136.1| - 0.019 15.3 0.1 0.31 11.4 0.1 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|325968944|ref|YP_004245136.1| - 0.063 12.4 0.0 0.092 11.8 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|325968944|ref|YP_004245136.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DHQ_synthase PF01761.15 gi|325968945|ref|YP_004245137.1| - 1.3e-79 266.8 0.0 1.9e-79 266.2 0.0 1.2 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|325968945|ref|YP_004245137.1| - 3.3e-07 29.8 0.1 8.8e-07 28.4 0.0 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|325968945|ref|YP_004245137.1| - 0.0013 17.4 0.4 0.087 11.4 0.1 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.15 gi|325968946|ref|YP_004245138.1| - 1.4e-74 250.1 0.0 1.7e-74 249.9 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|325968946|ref|YP_004245138.1| - 3e-06 26.5 0.0 2.7e-05 23.4 0.0 2.0 1 1 0 1 1 1 1 NeuB family PA PF02225.17 gi|325968946|ref|YP_004245138.1| - 0.2 11.3 2.5 1.3 8.7 0.0 2.8 3 0 0 3 3 3 0 PA domain PDH PF02153.12 gi|325968947|ref|YP_004245139.1| - 6.2e-17 61.3 0.0 1.1e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.16 gi|325968947|ref|YP_004245139.1| - 1.2e-15 57.3 0.0 2.3e-15 56.4 0.0 1.5 1 0 0 1 1 1 1 Chorismate mutase type II Death PF00531.17 gi|325968948|ref|YP_004245140.1| - 0.056 13.2 0.0 0.063 13.0 0.0 1.3 1 1 0 1 1 1 0 Death domain Chorismate_synt PF01264.16 gi|325968949|ref|YP_004245141.1| - 3.1e-125 417.2 0.0 3.5e-125 417.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Pribosyltran PF00156.22 gi|325968951|ref|YP_004245143.1| - 2.8e-21 75.5 0.1 3.6e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|325968951|ref|YP_004245143.1| - 0.0028 16.9 0.0 0.0038 16.4 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.1 gi|325968951|ref|YP_004245143.1| - 0.004 16.9 0.0 0.006 16.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain Aldedh PF00171.17 gi|325968951|ref|YP_004245143.1| - 0.034 12.4 0.0 0.042 12.1 0.0 1.0 1 0 0 1 1 1 0 Aldehyde dehydrogenase family GMP_synt_C PF00958.17 gi|325968952|ref|YP_004245144.1| - 2.8e-22 78.2 0.1 8.2e-22 76.7 0.1 1.9 1 1 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|325968952|ref|YP_004245144.1| - 4.2e-11 42.2 0.0 1.5e-05 24.0 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.15 gi|325968952|ref|YP_004245144.1| - 3.2e-07 30.0 0.0 4.8e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|325968952|ref|YP_004245144.1| - 0.00055 19.2 0.0 0.72 9.0 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|325968952|ref|YP_004245144.1| - 0.0056 16.1 0.0 0.061 12.7 0.0 2.6 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|325968952|ref|YP_004245144.1| - 0.017 13.7 0.0 1.5 7.3 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase GATase PF00117.23 gi|325968953|ref|YP_004245145.1| - 6.7e-32 110.4 0.0 7.5e-32 110.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|325968953|ref|YP_004245145.1| - 5.4e-11 42.3 0.3 1.3e-09 37.8 0.2 2.5 1 1 1 2 2 2 1 Peptidase C26 AA_permease_2 PF13520.1 gi|325968954|ref|YP_004245146.1| - 1.7e-25 89.4 68.1 2.1e-25 89.1 47.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|325968954|ref|YP_004245146.1| - 4.4e-05 22.0 59.4 5.6e-05 21.6 41.2 1.1 1 0 0 1 1 1 1 Amino acid permease Amidohydro_1 PF01979.15 gi|325968955|ref|YP_004245147.1| - 6e-20 72.1 0.0 8.6e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|325968955|ref|YP_004245147.1| - 3.5e-10 39.5 0.1 9.5e-10 38.1 0.0 1.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|325968955|ref|YP_004245147.1| - 1.8e-06 28.1 0.0 0.036 14.0 0.0 2.6 2 1 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|325968955|ref|YP_004245147.1| - 0.0016 17.7 0.0 0.32 10.1 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase family TauE PF01925.14 gi|325968956|ref|YP_004245148.1| - 4.6e-37 127.7 23.5 4.6e-37 127.7 16.3 2.0 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE DUF4131 PF13567.1 gi|325968956|ref|YP_004245148.1| - 8.5 5.7 12.3 1.2 8.5 0.3 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) DUF1634 PF07843.6 gi|325968957|ref|YP_004245149.1| - 1.5e-28 98.4 9.7 1.8e-28 98.2 6.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) Renin_r PF07850.9 gi|325968957|ref|YP_004245149.1| - 3 8.2 11.9 0.15 12.4 0.4 2.6 1 1 2 3 3 3 0 Renin receptor-like protein EamA PF00892.15 gi|325968958|ref|YP_004245150.1| - 1.9e-18 66.7 39.9 2.2e-13 50.3 10.5 2.7 2 2 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|325968958|ref|YP_004245150.1| - 5.1e-06 26.6 36.4 0.00063 19.9 8.5 3.0 2 1 0 2 2 2 2 Multidrug resistance efflux transporter MFS_1 PF07690.11 gi|325968959|ref|YP_004245151.1| - 3.4e-28 98.3 42.1 3.4e-28 98.3 29.1 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|325968959|ref|YP_004245151.1| - 0.0011 17.2 13.7 0.034 12.2 5.0 2.4 2 1 0 2 2 2 2 Transmembrane secretion effector Thermopsin PF05317.6 gi|325968960|ref|YP_004245152.1| - 7.8e-56 188.9 8.8 7.8e-56 188.9 6.1 2.5 3 0 0 3 3 3 1 Thermopsin DUF996 PF06195.8 gi|325968961|ref|YP_004245153.1| - 1.6e-28 99.4 22.5 7.8e-28 97.2 13.8 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF973 PF06157.6 gi|325968961|ref|YP_004245153.1| - 0.00012 21.1 22.4 0.0044 16.0 4.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF606 PF04657.8 gi|325968961|ref|YP_004245153.1| - 0.0082 16.2 8.5 0.0082 16.2 5.9 1.7 1 1 1 2 2 2 1 Protein of unknown function, DUF606 DUF1516 PF07457.6 gi|325968961|ref|YP_004245153.1| - 0.057 13.5 8.7 0.075 13.1 2.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1516) Cation_ATPase_C PF00689.16 gi|325968961|ref|YP_004245153.1| - 1.1 8.8 14.5 5.2 6.5 8.1 2.1 1 1 1 2 2 2 0 Cation transporting ATPase, C-terminus Cytochrom_B_N PF00033.14 gi|325968961|ref|YP_004245153.1| - 5.3 6.3 15.5 0.76 9.0 4.4 2.4 1 1 1 2 2 2 0 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|325968961|ref|YP_004245153.1| - 5.3 6.3 13.6 54 3.1 9.4 2.1 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 CoA_binding_3 PF13727.1 gi|325968961|ref|YP_004245153.1| - 7 6.4 10.4 0.16 11.7 1.3 2.0 2 0 0 2 2 2 0 CoA-binding domain DUF373 PF04123.8 gi|325968961|ref|YP_004245153.1| - 8.1 5.3 14.5 10 5.0 10.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) tRNA_int_endo PF01974.12 gi|325968962|ref|YP_004245154.1| - 2.6e-23 81.6 0.0 4.1e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|325968962|ref|YP_004245154.1| - 9.2e-19 66.7 0.1 1.5e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|325968962|ref|YP_004245154.1| - 0.1 12.0 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term CDC48_N PF02359.13 gi|325968963|ref|YP_004245155.1| - 0.0011 18.8 0.2 0.042 13.7 0.1 2.1 1 1 1 2 2 2 2 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.16 gi|325968963|ref|YP_004245155.1| - 0.0059 16.4 1.3 0.23 11.2 0.2 2.1 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain TT_ORF1 PF02956.9 gi|325968963|ref|YP_004245155.1| - 0.12 10.8 0.8 0.14 10.5 0.5 1.1 1 0 0 1 1 1 0 TT viral orf 1 zf-B_box PF00643.19 gi|325968964|ref|YP_004245156.1| - 0.00014 21.6 21.7 0.0018 18.0 1.2 3.9 3 1 1 4 4 4 3 B-box zinc finger zf-C2HC5 PF06221.8 gi|325968964|ref|YP_004245156.1| - 0.00023 20.8 18.4 0.011 15.5 3.2 2.5 1 1 1 2 2 2 2 Putative zinc finger motif, C2HC5-type FYVE PF01363.16 gi|325968964|ref|YP_004245156.1| - 0.14 12.0 31.9 0.52 10.2 4.8 3.8 1 1 1 2 2 2 0 FYVE zinc finger DUF2180 PF09947.4 gi|325968964|ref|YP_004245156.1| - 5.2 6.9 18.8 1.3 8.8 1.7 3.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zf-UBP PF02148.14 gi|325968964|ref|YP_004245156.1| - 6.8 6.8 16.4 4.3 7.5 0.7 3.0 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein CBS PF00571.23 gi|325968965|ref|YP_004245157.1| - 3.8e-32 109.8 1.2 9.6e-16 57.3 0.1 2.5 2 0 0 2 2 2 2 CBS domain HrcA_DNA-bdg PF03444.10 gi|325968965|ref|YP_004245157.1| - 1.2e-26 91.9 0.2 2.3e-26 91.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|325968965|ref|YP_004245157.1| - 1.5e-09 37.8 0.0 3.8e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|325968965|ref|YP_004245157.1| - 4.2e-09 35.9 0.0 3e-08 33.1 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|325968965|ref|YP_004245157.1| - 4.2e-06 26.3 0.0 2.1e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|325968965|ref|YP_004245157.1| - 8.1e-05 22.2 0.1 0.00023 20.8 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|325968965|ref|YP_004245157.1| - 0.00025 20.3 0.1 0.0011 18.3 0.0 2.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|325968965|ref|YP_004245157.1| - 0.0012 19.1 0.0 0.003 17.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|325968965|ref|YP_004245157.1| - 0.0016 18.2 0.1 0.0049 16.7 0.1 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FaeA PF04703.7 gi|325968965|ref|YP_004245157.1| - 0.004 17.2 0.1 0.028 14.5 0.0 2.3 3 0 0 3 3 2 1 FaeA-like protein HTH_20 PF12840.2 gi|325968965|ref|YP_004245157.1| - 0.022 14.5 0.0 0.11 12.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_terminase PF10668.4 gi|325968965|ref|YP_004245157.1| - 0.024 14.4 0.0 0.053 13.3 0.0 1.6 1 0 0 1 1 1 0 Phage terminase small subunit MarR_2 PF12802.2 gi|325968965|ref|YP_004245157.1| - 0.024 14.2 0.0 0.063 12.9 0.0 1.7 1 0 0 1 1 1 0 MarR family GntR PF00392.16 gi|325968965|ref|YP_004245157.1| - 0.026 13.9 0.0 0.064 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|325968965|ref|YP_004245157.1| - 0.03 13.9 0.0 0.12 12.0 0.0 2.1 1 1 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|325968965|ref|YP_004245157.1| - 0.031 13.7 0.2 0.27 10.7 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_34 PF13601.1 gi|325968965|ref|YP_004245157.1| - 0.071 13.1 0.0 0.24 11.4 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain Peptidase_C36 PF05415.6 gi|325968965|ref|YP_004245157.1| - 0.11 12.3 0.1 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Beet necrotic yellow vein furovirus-type papain-like endopeptidase PALP PF00291.20 gi|325968966|ref|YP_004245158.1| - 1.3e-24 86.9 0.2 3.1e-23 82.4 0.2 2.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TrmB PF01978.14 gi|325968966|ref|YP_004245158.1| - 0.014 15.0 0.0 0.061 13.0 0.1 2.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|325968966|ref|YP_004245158.1| - 0.023 14.7 0.0 0.042 13.9 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor zf-ribbon_3 PF13248.1 gi|325968966|ref|YP_004245158.1| - 0.032 13.4 3.3 0.054 12.7 2.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|325968966|ref|YP_004245158.1| - 0.064 13.0 0.5 0.11 12.3 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|325968966|ref|YP_004245158.1| - 0.2 11.1 4.6 0.59 9.6 2.8 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF2934 PF11154.3 gi|325968966|ref|YP_004245158.1| - 0.21 10.9 0.9 4.4 6.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2934) DUF87 PF01935.12 gi|325968967|ref|YP_004245159.1| - 1.8e-35 122.8 0.1 5.4e-35 121.2 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|325968967|ref|YP_004245159.1| - 7.4e-22 78.1 0.0 1.1e-21 77.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|325968967|ref|YP_004245159.1| - 4.6e-08 32.7 0.0 0.00039 19.9 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|325968967|ref|YP_004245159.1| - 1.5e-05 23.8 0.0 0.00036 19.2 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.9 gi|325968967|ref|YP_004245159.1| - 0.00023 19.8 0.0 0.00034 19.3 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer Zot PF05707.7 gi|325968967|ref|YP_004245159.1| - 0.0007 19.1 0.0 0.25 10.7 0.0 2.5 2 1 0 2 2 2 2 Zonular occludens toxin (Zot) DUF853 PF05872.7 gi|325968967|ref|YP_004245159.1| - 0.00083 17.8 0.0 0.28 9.4 0.0 2.4 2 1 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.10 gi|325968967|ref|YP_004245159.1| - 0.0013 18.5 0.0 0.012 15.4 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|325968967|ref|YP_004245159.1| - 0.003 17.6 0.1 0.67 10.0 0.0 3.2 3 0 0 3 3 3 1 AAA domain DEAD PF00270.24 gi|325968967|ref|YP_004245159.1| - 0.03 13.8 0.0 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase T2SE PF00437.15 gi|325968967|ref|YP_004245159.1| - 0.039 12.8 0.0 0.08 11.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.18 gi|325968967|ref|YP_004245159.1| - 0.1 12.0 0.2 0.27 10.5 0.0 1.8 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Metallophos PF00149.23 gi|325968968|ref|YP_004245160.1| - 2e-13 50.2 0.2 3.9e-13 49.2 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|325968968|ref|YP_004245160.1| - 1e-11 44.9 0.1 1.8e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HAD PF12710.2 gi|325968968|ref|YP_004245160.1| - 0.047 13.8 0.0 0.1 12.7 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase SMC_N PF02463.14 gi|325968969|ref|YP_004245161.1| - 3e-24 85.4 0.0 2.3e-12 46.6 0.0 2.7 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|325968969|ref|YP_004245161.1| - 1.5e-17 64.5 47.1 2.8e-14 53.9 16.7 4.6 2 2 0 3 3 3 1 AAA domain AAA_13 PF13166.1 gi|325968969|ref|YP_004245161.1| - 4.9e-17 61.6 26.3 3.5e-07 29.0 0.0 5.1 2 1 2 4 4 4 4 AAA domain AAA_21 PF13304.1 gi|325968969|ref|YP_004245161.1| - 2.3e-13 50.7 9.5 2.2e-08 34.4 0.7 3.5 3 1 0 3 3 3 2 AAA domain Baculo_PEP_C PF04513.7 gi|325968969|ref|YP_004245161.1| - 1.4e-10 41.1 21.2 0.029 14.2 0.1 5.9 3 2 3 6 6 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_15 PF13175.1 gi|325968969|ref|YP_004245161.1| - 3.8e-09 36.0 0.1 5.7e-07 28.9 0.1 3.6 4 1 1 5 5 3 2 AAA ATPase domain AAA_27 PF13514.1 gi|325968969|ref|YP_004245161.1| - 4.1e-08 31.4 52.1 0.0013 16.5 17.2 4.3 3 1 0 4 4 4 3 AAA domain ABC_tran PF00005.22 gi|325968969|ref|YP_004245161.1| - 7.5e-07 29.5 13.0 0.015 15.6 0.0 4.9 3 2 0 3 3 3 2 ABC transporter NPV_P10 PF05531.7 gi|325968969|ref|YP_004245161.1| - 8.7e-06 25.8 19.0 0.045 13.9 1.4 7.6 3 3 4 7 7 7 2 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|325968969|ref|YP_004245161.1| - 2.5e-05 23.9 75.8 0.18 11.3 7.3 5.2 1 1 3 4 4 4 1 IncA protein Rad50_zn_hook PF04423.9 gi|325968969|ref|YP_004245161.1| - 2.9e-05 23.4 0.2 2.9e-05 23.4 0.1 6.7 8 1 0 8 8 5 1 Rad50 zinc hook motif AAA_29 PF13555.1 gi|325968969|ref|YP_004245161.1| - 3.5e-05 23.2 0.0 6.7e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain APG6 PF04111.7 gi|325968969|ref|YP_004245161.1| - 0.00019 20.6 51.5 0.23 10.4 14.0 4.4 2 2 2 4 4 4 4 Autophagy protein Apg6 BLOC1_2 PF10046.4 gi|325968969|ref|YP_004245161.1| - 0.0002 21.4 36.0 0.096 12.8 5.9 8.0 2 2 6 8 8 8 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.6 gi|325968969|ref|YP_004245161.1| - 0.00024 19.8 56.0 0.15 10.6 8.7 4.4 2 2 2 4 4 4 3 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|325968969|ref|YP_004245161.1| - 0.00033 19.9 20.4 0.065 12.3 0.1 4.4 2 2 2 4 4 4 3 Reovirus sigma C capsid protein GAS PF13851.1 gi|325968969|ref|YP_004245161.1| - 0.00041 19.6 56.6 0.03 13.5 2.9 5.6 1 1 4 5 5 5 3 Growth-arrest specific micro-tubule binding SbcCD_C PF13558.1 gi|325968969|ref|YP_004245161.1| - 0.00048 19.9 0.0 0.0015 18.3 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit IFT57 PF10498.4 gi|325968969|ref|YP_004245161.1| - 0.0006 18.6 43.2 0.092 11.4 9.3 4.3 2 2 1 4 4 4 3 Intra-flagellar transport protein 57 WEMBL PF05701.6 gi|325968969|ref|YP_004245161.1| - 0.0019 16.7 4.0 0.0019 16.7 2.8 4.2 2 2 2 4 4 4 1 Weak chloroplast movement under blue light DUF869 PF05911.6 gi|325968969|ref|YP_004245161.1| - 0.013 13.8 46.0 0.52 8.4 6.2 3.3 1 1 2 3 3 3 0 Plant protein of unknown function (DUF869) FlxA PF14282.1 gi|325968969|ref|YP_004245161.1| - 0.021 14.7 10.2 3.3 7.7 0.2 4.8 3 1 2 5 5 5 0 FlxA-like protein AAA PF00004.24 gi|325968969|ref|YP_004245161.1| - 0.025 14.7 0.0 0.23 11.6 0.0 2.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|325968969|ref|YP_004245161.1| - 0.034 13.8 0.1 0.68 9.5 0.0 2.9 2 1 0 2 2 2 0 NACHT domain Filament PF00038.16 gi|325968969|ref|YP_004245161.1| - 0.07 12.5 64.0 0.078 12.4 0.8 5.1 1 1 1 3 3 3 0 Intermediate filament protein CENP-F_leu_zip PF10473.4 gi|325968969|ref|YP_004245161.1| - 0.2 11.5 77.4 0.065 13.0 2.0 6.7 2 2 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.14 gi|325968969|ref|YP_004245161.1| - 0.21 9.2 71.1 0.0093 13.7 15.0 4.2 2 2 1 3 3 3 0 Myosin tail TPR_MLP1_2 PF07926.7 gi|325968969|ref|YP_004245161.1| - 0.27 10.9 0.1 0.27 10.9 0.0 5.1 2 1 1 3 3 2 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.17 gi|325968969|ref|YP_004245161.1| - 0.3 11.0 55.1 0.16 12.0 1.9 6.6 2 2 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain DUF3251 PF11622.3 gi|325968969|ref|YP_004245161.1| - 0.36 10.2 5.7 1.9 7.8 0.3 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3251) Laminin_II PF06009.7 gi|325968969|ref|YP_004245161.1| - 0.4 10.4 38.7 0.22 11.2 1.5 5.7 2 2 5 7 7 7 0 Laminin Domain II AAA_22 PF13401.1 gi|325968969|ref|YP_004245161.1| - 0.59 10.2 0.0 0.59 10.2 0.0 4.0 4 1 0 4 4 2 0 AAA domain Sec34 PF04136.10 gi|325968969|ref|YP_004245161.1| - 0.75 9.4 23.0 9 5.9 0.3 5.0 2 2 2 5 5 5 0 Sec34-like family DUF4201 PF13870.1 gi|325968969|ref|YP_004245161.1| - 1.7 8.0 60.6 0.15 11.4 15.0 5.9 2 2 4 6 6 6 0 Domain of unknown function (DUF4201) Exonuc_VII_L PF02601.10 gi|325968969|ref|YP_004245161.1| - 1.9 7.5 31.2 0.57 9.3 1.4 3.4 1 1 2 3 3 3 0 Exonuclease VII, large subunit ATG16 PF08614.6 gi|325968969|ref|YP_004245161.1| - 3.3 7.5 65.9 1.9 8.3 7.0 6.0 2 2 3 5 5 5 0 Autophagy protein 16 (ATG16) Occludin_ELL PF07303.8 gi|325968969|ref|YP_004245161.1| - 3.3 8.4 33.7 9.9 6.9 0.6 7.0 3 3 5 8 8 6 0 Occludin homology domain LOH1CR12 PF10158.4 gi|325968969|ref|YP_004245161.1| - 3.4 7.4 14.3 15 5.4 0.6 4.5 3 2 2 5 5 5 0 Tumour suppressor protein DUF342 PF03961.8 gi|325968969|ref|YP_004245161.1| - 4.1 5.7 46.7 0.59 8.4 0.8 5.2 1 1 6 7 7 7 0 Protein of unknown function (DUF342) Flagellin_N PF00669.15 gi|325968969|ref|YP_004245161.1| - 5.6 6.7 11.3 3.8 7.2 2.2 4.3 3 2 3 6 6 5 0 Bacterial flagellin N-terminal helical region Fib_alpha PF08702.5 gi|325968969|ref|YP_004245161.1| - 6.7 6.8 27.8 5.2 7.1 0.5 5.1 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family DASH_Dam1 PF08653.5 gi|325968969|ref|YP_004245161.1| - 8.7 6.1 14.8 73 3.2 0.1 7.1 4 4 3 7 7 7 0 DASH complex subunit Dam1 Nup54 PF13874.1 gi|325968969|ref|YP_004245161.1| - 9.4 5.8 54.5 0.36 10.4 1.6 6.2 2 2 4 6 6 6 0 Nucleoporin complex subunit 54 Allexi_40kDa PF05549.6 gi|325968969|ref|YP_004245161.1| - 9.6 5.3 23.5 9.5 5.4 0.7 4.7 1 1 5 7 7 7 0 Allexivirus 40kDa protein Succ_CoA_lig PF13607.1 gi|325968971|ref|YP_004245163.1| - 1.6e-46 157.3 1.8 1.2e-45 154.5 0.2 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|325968971|ref|YP_004245163.1| - 1.1e-22 80.3 0.6 2e-21 76.3 0.1 3.0 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|325968971|ref|YP_004245163.1| - 1.3e-13 51.2 0.0 9.1e-13 48.5 0.0 2.3 2 0 0 2 2 2 1 CoA binding domain Peripla_BP_3 PF13377.1 gi|325968971|ref|YP_004245163.1| - 0.021 14.8 0.5 1.1 9.2 0.0 3.1 2 1 0 3 3 3 0 Periplasmic binding protein-like domain GFO_IDH_MocA PF01408.17 gi|325968971|ref|YP_004245163.1| - 0.053 14.0 0.0 2.6 8.5 0.0 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Na_H_Exchanger PF00999.16 gi|325968972|ref|YP_004245164.1| - 1.3e-52 178.6 59.0 1.5e-52 178.3 40.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2324 PF10086.4 gi|325968973|ref|YP_004245165.1| - 1.7e-08 33.9 18.1 4.2e-08 32.6 12.5 1.7 1 1 0 1 1 1 1 Putative membrane peptidase family (DUF2324) VPEP PF07589.6 gi|325968973|ref|YP_004245165.1| - 0.26 11.2 1.9 2 8.3 1.3 2.7 1 0 0 1 1 1 0 PEP-CTERM motif Voltage_CLC PF00654.15 gi|325968974|ref|YP_004245166.1| - 7.5e-68 229.1 34.7 8e-68 229.0 19.7 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel PaREP1 PF05942.6 gi|325968975|ref|YP_004245167.1| - 4.7e-33 113.4 0.4 9.8e-33 112.4 0.0 1.6 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family Methyltransf_11 PF08241.7 gi|325968976|ref|YP_004245168.1| - 1.1e-10 41.8 0.0 1.4e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325968976|ref|YP_004245168.1| - 6.1e-07 29.1 0.0 7.2e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|325968976|ref|YP_004245168.1| - 0.00046 20.5 0.0 0.0006 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|325968976|ref|YP_004245168.1| - 0.0013 19.1 0.1 0.0021 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325968976|ref|YP_004245168.1| - 0.007 16.9 0.4 0.011 16.2 0.2 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325968976|ref|YP_004245168.1| - 0.008 15.9 0.2 0.021 14.5 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|325968976|ref|YP_004245168.1| - 0.024 14.0 0.2 0.04 13.2 0.1 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|325968976|ref|YP_004245168.1| - 0.054 13.5 1.5 0.1 12.6 1.1 1.5 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|325968976|ref|YP_004245168.1| - 0.15 11.5 0.6 0.19 11.2 0.4 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_AsnC-type PF13404.1 gi|325968977|ref|YP_004245169.1| - 8.4e-14 50.8 1.5 1.1e-13 50.4 0.2 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|325968977|ref|YP_004245169.1| - 1.8e-12 46.3 0.9 2e-12 46.2 0.1 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|325968977|ref|YP_004245169.1| - 4.1e-05 23.1 0.0 6e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 HTH domain Myb_DNA-bind_6 PF13921.1 gi|325968977|ref|YP_004245169.1| - 5.6e-05 23.1 0.0 7.2e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Myb-like DNA-binding domain HTH_20 PF12840.2 gi|325968977|ref|YP_004245169.1| - 0.00024 20.8 0.1 0.00034 20.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|325968977|ref|YP_004245169.1| - 0.0012 18.4 0.0 0.0017 17.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|325968977|ref|YP_004245169.1| - 0.0015 18.0 0.1 0.0052 16.3 0.0 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|325968977|ref|YP_004245169.1| - 0.0017 17.7 0.0 0.0047 16.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HrcA_DNA-bdg PF03444.10 gi|325968977|ref|YP_004245169.1| - 0.002 17.5 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Mga PF08280.6 gi|325968977|ref|YP_004245169.1| - 0.002 17.8 0.0 0.0054 16.4 0.0 1.7 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Fe_dep_repress PF01325.14 gi|325968977|ref|YP_004245169.1| - 0.0032 17.3 0.0 0.0044 16.9 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|325968977|ref|YP_004245169.1| - 0.0037 16.8 0.3 0.06 13.0 0.4 2.1 1 1 1 2 2 2 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|325968977|ref|YP_004245169.1| - 0.005 16.3 0.1 0.022 14.3 0.0 2.0 1 1 1 2 2 2 1 DeoR-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|325968977|ref|YP_004245169.1| - 0.0061 15.8 0.1 0.02 14.2 0.1 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|325968977|ref|YP_004245169.1| - 0.0066 15.5 0.1 0.0099 15.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 LexA_DNA_bind PF01726.11 gi|325968977|ref|YP_004245169.1| - 0.0077 15.7 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.14 gi|325968977|ref|YP_004245169.1| - 0.01 15.5 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|325968977|ref|YP_004245169.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.2 gi|325968977|ref|YP_004245169.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|325968977|ref|YP_004245169.1| - 0.018 14.7 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|325968977|ref|YP_004245169.1| - 0.023 14.8 0.0 0.04 14.0 0.0 1.4 1 1 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.12 gi|325968977|ref|YP_004245169.1| - 0.097 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit ABC_tran PF00005.22 gi|325968978|ref|YP_004245170.1| - 6.8e-23 81.4 0.0 1e-22 80.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325968978|ref|YP_004245170.1| - 2e-14 54.2 0.1 9.7e-09 35.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325968978|ref|YP_004245170.1| - 0.00034 19.9 0.0 0.25 10.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|325968978|ref|YP_004245170.1| - 0.0017 18.1 0.0 0.0079 16.0 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|325968978|ref|YP_004245170.1| - 0.0096 15.9 0.2 0.093 12.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|325968978|ref|YP_004245170.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|325968978|ref|YP_004245170.1| - 0.023 14.1 0.1 0.027 13.9 0.1 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA PF00004.24 gi|325968978|ref|YP_004245170.1| - 0.024 14.8 0.9 0.053 13.7 0.6 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|325968978|ref|YP_004245170.1| - 0.028 14.7 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|325968978|ref|YP_004245170.1| - 0.047 12.8 0.0 0.068 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|325968978|ref|YP_004245170.1| - 0.054 12.5 0.0 4.1 6.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|325968978|ref|YP_004245170.1| - 0.069 12.2 0.0 0.29 10.1 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.1 gi|325968978|ref|YP_004245170.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|325968978|ref|YP_004245170.1| - 0.16 11.4 0.1 6.8 6.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|325968978|ref|YP_004245170.1| - 0.2 11.4 0.7 0.55 10.0 0.1 2.0 3 0 0 3 3 3 0 Part of AAA domain SHS2_Rpb7-N PF03876.12 gi|325968980|ref|YP_004245172.1| - 8.4e-14 51.4 0.1 1.7e-13 50.4 0.1 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|325968980|ref|YP_004245172.1| - 8.5e-11 41.7 2.1 8.5e-11 41.7 1.5 2.2 2 1 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|325968980|ref|YP_004245172.1| - 0.052 13.7 0.0 0.093 12.9 0.0 1.5 2 0 0 2 2 2 0 RNA polymerase III subunit Rpc25 Med1 PF10744.4 gi|325968981|ref|YP_004245173.1| - 0.0043 15.8 0.0 0.0045 15.8 0.0 1.1 1 0 0 1 1 1 1 Mediator of RNA polymerase II transcription subunit 1 SUI1 PF01253.17 gi|325968982|ref|YP_004245174.1| - 4.3e-18 64.8 0.9 6.6e-18 64.3 0.4 1.4 2 0 0 2 2 2 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|325968982|ref|YP_004245174.1| - 0.041 14.1 0.3 0.092 12.9 0.2 1.7 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) PNP_UDP_1 PF01048.15 gi|325968984|ref|YP_004245176.1| - 9.8e-36 122.8 0.0 1.1e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily SIS PF01380.17 gi|325968985|ref|YP_004245177.1| - 1.7e-39 134.4 0.7 1.3e-29 102.4 0.2 2.2 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.1 gi|325968985|ref|YP_004245177.1| - 7.9e-06 25.6 0.3 0.00047 19.8 0.0 2.9 3 0 0 3 3 3 1 SIS domain bact-PGI_C PF10432.4 gi|325968985|ref|YP_004245177.1| - 0.0062 16.2 0.0 0.017 14.8 0.0 1.8 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region NurA PF09376.5 gi|325968986|ref|YP_004245178.1| - 4.3e-11 42.7 0.0 7.2e-11 42.0 0.0 1.4 1 1 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|325968987|ref|YP_004245179.1| - 5.2e-20 72.0 0.3 4.6e-18 65.6 0.2 2.3 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|325968987|ref|YP_004245179.1| - 9.7e-10 37.3 0.2 7.6e-05 21.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|325968987|ref|YP_004245179.1| - 3.2e-09 36.9 0.0 6.6e-09 35.9 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|325968987|ref|YP_004245179.1| - 5.2e-08 32.6 1.0 5.6e-06 25.9 0.1 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|325968987|ref|YP_004245179.1| - 9.1e-07 29.0 0.1 0.0011 19.0 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_25 PF13481.1 gi|325968987|ref|YP_004245179.1| - 1.2e-05 24.8 0.2 0.037 13.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|325968987|ref|YP_004245179.1| - 3.1e-05 24.7 0.1 9.3e-05 23.2 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|325968987|ref|YP_004245179.1| - 6.7e-05 23.1 0.6 0.096 12.8 0.1 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|325968987|ref|YP_004245179.1| - 0.00012 21.8 1.2 0.00027 20.6 0.8 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|325968987|ref|YP_004245179.1| - 0.00022 21.5 0.1 0.00055 20.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|325968987|ref|YP_004245179.1| - 0.00023 19.9 0.0 0.00062 18.4 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|325968987|ref|YP_004245179.1| - 0.00026 19.9 0.1 0.00048 19.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein SRP54 PF00448.17 gi|325968987|ref|YP_004245179.1| - 0.00065 19.1 0.4 0.0014 18.1 0.3 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain DUF2075 PF09848.4 gi|325968987|ref|YP_004245179.1| - 0.0007 18.6 0.2 0.64 8.9 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|325968987|ref|YP_004245179.1| - 0.00094 18.8 0.2 0.003 17.2 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain ABC_tran PF00005.22 gi|325968987|ref|YP_004245179.1| - 0.0014 18.8 0.0 0.0033 17.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.7 gi|325968987|ref|YP_004245179.1| - 0.0016 17.6 0.0 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Zot PF05707.7 gi|325968987|ref|YP_004245179.1| - 0.0018 17.8 0.1 0.012 15.0 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|325968987|ref|YP_004245179.1| - 0.0018 17.8 0.0 0.61 9.5 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|325968987|ref|YP_004245179.1| - 0.0018 18.2 0.0 0.0043 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|325968987|ref|YP_004245179.1| - 0.0022 17.6 0.2 0.0041 16.7 0.2 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|325968987|ref|YP_004245179.1| - 0.0034 17.1 0.3 0.55 9.9 0.1 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Pox_A32 PF04665.7 gi|325968987|ref|YP_004245179.1| - 0.0038 16.5 0.1 0.0069 15.7 0.0 1.3 1 0 0 1 1 1 1 Poxvirus A32 protein AAA_29 PF13555.1 gi|325968987|ref|YP_004245179.1| - 0.004 16.6 0.1 0.0079 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|325968987|ref|YP_004245179.1| - 0.0056 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|325968987|ref|YP_004245179.1| - 0.012 15.5 0.4 0.029 14.3 0.3 1.7 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|325968987|ref|YP_004245179.1| - 0.014 15.2 0.0 0.15 11.8 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit PduV-EutP PF10662.4 gi|325968987|ref|YP_004245179.1| - 0.017 14.5 0.1 0.035 13.5 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|325968987|ref|YP_004245179.1| - 0.019 13.7 0.2 0.041 12.6 0.0 1.5 2 0 0 2 2 2 0 ArgK protein ATP_bind_1 PF03029.12 gi|325968987|ref|YP_004245179.1| - 0.022 14.3 0.1 0.037 13.5 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein HTH_Tnp_4 PF13613.1 gi|325968987|ref|YP_004245179.1| - 0.025 14.0 0.0 0.061 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_23 PF13384.1 gi|325968987|ref|YP_004245179.1| - 0.027 14.1 0.0 0.11 12.2 0.0 2.0 1 0 0 1 1 1 0 Homeodomain-like domain UPF0079 PF02367.12 gi|325968987|ref|YP_004245179.1| - 0.028 14.0 0.1 0.086 12.4 0.1 1.8 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 cobW PF02492.14 gi|325968987|ref|YP_004245179.1| - 0.044 13.2 0.4 0.1 12.0 0.3 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|325968987|ref|YP_004245179.1| - 0.053 12.8 0.3 0.096 11.9 0.2 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B Miro PF08477.8 gi|325968987|ref|YP_004245179.1| - 0.057 13.9 0.3 0.13 12.8 0.2 1.5 1 0 0 1 1 1 0 Miro-like protein SRPRB PF09439.5 gi|325968987|ref|YP_004245179.1| - 0.062 12.5 0.0 0.097 11.8 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit HTH_Tnp_ISL3 PF13542.1 gi|325968987|ref|YP_004245179.1| - 0.068 12.3 0.0 1.7 7.9 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.1 gi|325968987|ref|YP_004245179.1| - 0.069 13.1 0.6 0.29 11.1 0.0 2.3 2 0 0 2 2 1 0 Helix-turn-helix domain Mg_chelatase PF01078.16 gi|325968987|ref|YP_004245179.1| - 0.074 12.2 0.0 0.14 11.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.1 gi|325968987|ref|YP_004245179.1| - 0.084 13.1 0.0 0.14 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|325968987|ref|YP_004245179.1| - 0.11 12.4 0.1 0.36 10.7 0.1 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.1 gi|325968987|ref|YP_004245179.1| - 0.12 11.9 0.1 0.3 10.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|325968987|ref|YP_004245179.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|325968987|ref|YP_004245179.1| - 0.14 11.3 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF3584 PF12128.3 gi|325968987|ref|YP_004245179.1| - 0.16 9.3 0.4 0.21 8.9 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) G-alpha PF00503.15 gi|325968987|ref|YP_004245179.1| - 0.16 10.6 0.0 0.25 9.9 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit UvrD-helicase PF00580.16 gi|325968987|ref|YP_004245179.1| - 0.19 10.9 0.1 0.35 10.1 0.1 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain HDC PF02329.11 gi|325968987|ref|YP_004245179.1| - 0.21 10.1 0.0 0.34 9.5 0.0 1.2 1 0 0 1 1 1 0 Histidine carboxylase PI chain Cas_APE2256 PF09651.5 gi|325968988|ref|YP_004245180.1| - 1.1e-15 57.4 0.0 1.7e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Cas_DxTHG PF09455.5 gi|325968989|ref|YP_004245181.1| - 3.1e-29 102.3 4.8 2.6e-27 95.9 3.4 2.6 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Cas_Cmr3 PF09700.5 gi|325968990|ref|YP_004245182.1| - 8.7e-05 22.1 0.0 0.02 14.3 0.0 2.4 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) Cas_Cas5d PF09704.5 gi|325968990|ref|YP_004245182.1| - 0.01 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) DUF3692 PF12469.3 gi|325968991|ref|YP_004245183.1| - 3e-26 91.9 0.0 8.4e-26 90.4 0.0 1.8 1 0 0 1 1 1 1 CRISPR-associated protein RAMPs PF03787.10 gi|325968992|ref|YP_004245184.1| - 5.9e-22 78.5 0.0 8.8e-22 77.9 0.0 1.3 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.5 gi|325968993|ref|YP_004245185.1| - 1e-06 28.9 0.0 3.6e-06 27.1 0.0 1.8 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.10 gi|325968994|ref|YP_004245186.1| - 2.9e-05 24.0 0.7 8.8e-05 22.4 0.5 1.9 1 1 0 1 1 1 1 RAMP superfamily Molydop_binding PF01568.16 gi|325968994|ref|YP_004245186.1| - 0.0062 16.3 0.1 0.062 13.1 0.1 2.3 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.13 gi|325968994|ref|YP_004245186.1| - 0.018 15.0 0.5 0.056 13.3 0.3 1.8 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain RAMPs PF03787.10 gi|325968995|ref|YP_004245187.1| - 8.8e-08 32.2 0.1 8.6e-07 29.0 0.1 2.1 1 1 0 1 1 1 1 RAMP superfamily AAA_21 PF13304.1 gi|325968996|ref|YP_004245188.1| - 1.5e-18 67.8 0.3 4.1e-18 66.3 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|325968996|ref|YP_004245188.1| - 4.2e-13 50.0 0.0 6.1e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|325968996|ref|YP_004245188.1| - 1.2e-10 41.0 0.1 2e-09 36.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|325968996|ref|YP_004245188.1| - 1.3e-06 28.2 1.3 0.026 14.2 0.2 2.5 2 1 0 2 2 2 2 Archaeal ATPase AAA_15 PF13175.1 gi|325968996|ref|YP_004245188.1| - 2.4e-06 26.8 0.3 4.6e-05 22.6 0.1 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|325968996|ref|YP_004245188.1| - 6.8e-06 25.8 0.1 0.0072 16.0 0.0 2.6 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|325968996|ref|YP_004245188.1| - 8.1e-06 25.2 0.0 1.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|325968996|ref|YP_004245188.1| - 1.3e-05 25.4 0.0 0.00022 21.4 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|325968996|ref|YP_004245188.1| - 3e-05 24.8 1.1 0.00021 22.1 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|325968996|ref|YP_004245188.1| - 5.2e-05 23.4 0.2 0.0023 18.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|325968996|ref|YP_004245188.1| - 0.0002 21.6 0.1 0.00039 20.7 0.1 1.4 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|325968996|ref|YP_004245188.1| - 0.0004 20.6 0.6 0.0018 18.5 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|325968996|ref|YP_004245188.1| - 0.00059 19.8 0.1 0.01 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|325968996|ref|YP_004245188.1| - 0.0013 18.4 0.1 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|325968996|ref|YP_004245188.1| - 0.0025 17.9 0.0 0.015 15.4 0.0 2.1 2 0 0 2 2 2 1 RNA helicase AAA_14 PF13173.1 gi|325968996|ref|YP_004245188.1| - 0.003 17.4 0.3 0.16 11.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|325968996|ref|YP_004245188.1| - 0.0035 17.3 0.0 0.02 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|325968996|ref|YP_004245188.1| - 0.0037 16.6 0.0 0.0076 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.16 gi|325968996|ref|YP_004245188.1| - 0.0064 15.9 0.1 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 MutS domain V IstB_IS21 PF01695.12 gi|325968996|ref|YP_004245188.1| - 0.0068 15.8 0.3 0.11 11.8 0.0 2.3 2 1 1 3 3 3 1 IstB-like ATP binding protein AAA_13 PF13166.1 gi|325968996|ref|YP_004245188.1| - 0.007 14.8 0.0 0.015 13.7 0.0 1.5 2 0 0 2 2 2 1 AAA domain CPT PF07931.7 gi|325968996|ref|YP_004245188.1| - 0.014 15.0 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_27 PF13514.1 gi|325968996|ref|YP_004245188.1| - 0.019 12.6 0.0 0.024 12.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|325968996|ref|YP_004245188.1| - 0.021 14.0 0.0 0.034 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|325968996|ref|YP_004245188.1| - 0.023 14.4 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF2813 PF11398.3 gi|325968996|ref|YP_004245188.1| - 0.031 13.3 0.0 1.8 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) UPF0079 PF02367.12 gi|325968996|ref|YP_004245188.1| - 0.031 13.8 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|325968996|ref|YP_004245188.1| - 0.036 13.9 0.0 0.084 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|325968996|ref|YP_004245188.1| - 0.044 12.4 0.0 0.28 9.8 0.0 2.0 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Bac_DnaA PF00308.13 gi|325968996|ref|YP_004245188.1| - 0.048 13.3 0.2 3.1 7.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein CbiA PF01656.18 gi|325968996|ref|YP_004245188.1| - 0.05 13.0 0.2 0.23 10.8 0.0 2.0 1 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF815 PF05673.8 gi|325968996|ref|YP_004245188.1| - 0.055 12.3 0.0 0.11 11.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_10 PF12846.2 gi|325968996|ref|YP_004245188.1| - 0.087 12.2 0.1 0.23 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|325968996|ref|YP_004245188.1| - 0.12 11.5 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|325968996|ref|YP_004245188.1| - 0.14 11.8 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|325968996|ref|YP_004245188.1| - 0.15 12.0 0.2 0.46 10.4 0.1 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Cas_APE2256 PF09651.5 gi|325968998|ref|YP_004245190.1| - 2.1e-35 121.4 0.0 2.9e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF3052 PF11253.3 gi|325968998|ref|YP_004245190.1| - 0.11 12.0 0.3 0.58 9.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3052) DUF2276 PF10040.4 gi|325968999|ref|YP_004245191.1| - 1.8e-19 70.1 0.1 3.3e-19 69.2 0.1 1.5 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) DUF3084 PF11283.3 gi|325968999|ref|YP_004245191.1| - 0.058 13.2 0.3 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3084) Cas_DxTHG PF09455.5 gi|325969000|ref|YP_004245192.1| - 3.6e-10 39.5 0.1 3.6e-10 39.5 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Cas_DxTHG PF09455.5 gi|325969001|ref|YP_004245193.1| - 0.0068 15.5 0.3 0.035 13.2 0.2 1.9 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family GATA PF00320.22 gi|325969002|ref|YP_004245194.1| - 0.19 11.0 0.2 0.43 9.9 0.1 1.5 1 0 0 1 1 1 0 GATA zinc finger RAMPs PF03787.10 gi|325969003|ref|YP_004245195.1| - 0.016 15.0 0.5 0.033 14.0 0.4 1.7 1 1 0 1 1 1 0 RAMP superfamily RAMPs PF03787.10 gi|325969005|ref|YP_004245197.1| - 5.8e-09 36.0 0.0 1.1e-08 35.1 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily AAA_15 PF13175.1 gi|325969007|ref|YP_004245199.1| - 2.8e-09 36.5 0.1 0.0023 17.0 0.5 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|325969007|ref|YP_004245199.1| - 1.9e-06 28.0 1.6 6.9e-06 26.2 1.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|325969007|ref|YP_004245199.1| - 7.5e-05 23.1 1.2 0.00014 22.2 0.8 1.4 1 1 0 1 1 1 1 AAA domain Njmu-R1 PF15053.1 gi|325969008|ref|YP_004245200.1| - 0.0041 15.9 0.8 0.0051 15.5 0.5 1.1 1 0 0 1 1 1 1 Mjmu-R1-like protein family Cas_DxTHG PF09455.5 gi|325969011|ref|YP_004245203.1| - 3.4e-10 39.6 2.4 1.2e-08 34.5 0.2 2.7 2 1 1 3 3 3 2 CRISPR-associated (Cas) DxTHG family DUF568 PF04526.8 gi|325969011|ref|YP_004245203.1| - 0.053 13.8 0.1 0.1 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF568) EVE PF01878.13 gi|325969012|ref|YP_004245204.1| - 0.0028 17.6 0.0 0.0041 17.1 0.0 1.2 1 0 0 1 1 1 1 EVE domain DEAD PF00270.24 gi|325969013|ref|YP_004245205.1| - 2.1e-30 105.4 0.0 7.5e-30 103.6 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|325969013|ref|YP_004245205.1| - 2.6e-30 105.5 0.1 9.2e-30 103.7 0.0 2.0 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.26 gi|325969013|ref|YP_004245205.1| - 7.1e-17 61.0 0.3 9.3e-15 54.2 0.1 2.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|325969013|ref|YP_004245205.1| - 4.6e-06 26.5 0.0 2.8e-05 24.0 0.0 2.3 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|325969013|ref|YP_004245205.1| - 0.0015 18.6 0.2 0.065 13.3 0.0 3.1 2 0 0 2 2 2 1 AAA domain SecA_DEAD PF07517.9 gi|325969013|ref|YP_004245205.1| - 0.0017 17.6 0.0 0.0032 16.7 0.0 1.6 1 1 0 1 1 1 1 SecA DEAD-like domain AAA_25 PF13481.1 gi|325969013|ref|YP_004245205.1| - 0.0017 17.7 0.1 0.0054 16.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain HypA PF01155.14 gi|325969013|ref|YP_004245205.1| - 0.0022 17.6 0.1 0.0052 16.4 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family AAA_10 PF12846.2 gi|325969013|ref|YP_004245205.1| - 0.023 14.1 0.2 2.7 7.3 0.0 2.6 2 0 0 2 2 2 0 AAA-like domain Zn_Tnp_IS1 PF03811.8 gi|325969013|ref|YP_004245205.1| - 0.085 12.3 0.2 0.22 11.0 0.1 1.7 1 0 0 1 1 1 0 InsA N-terminal domain zf-ribbon_3 PF13248.1 gi|325969013|ref|YP_004245205.1| - 0.35 10.1 0.9 0.92 8.8 0.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain CbiA PF01656.18 gi|325969014|ref|YP_004245206.1| - 2e-06 27.3 0.9 7e-06 25.5 0.2 1.8 1 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|325969014|ref|YP_004245206.1| - 0.051 12.6 0.1 0.09 11.8 0.1 1.3 1 0 0 1 1 1 0 ATPase MipZ VirC1 PF07015.6 gi|325969014|ref|YP_004245206.1| - 0.075 12.0 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 VirC1 protein AAA_31 PF13614.1 gi|325969014|ref|YP_004245206.1| - 0.19 11.6 0.2 2.6 7.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain MARVEL PF01284.18 gi|325969015|ref|YP_004245207.1| - 7 6.4 13.6 1e+02 2.7 9.4 2.2 1 1 0 1 1 1 0 Membrane-associating domain CbiA PF01656.18 gi|325969016|ref|YP_004245208.1| - 8.7e-08 31.7 0.1 1.6e-07 30.8 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|325969016|ref|YP_004245208.1| - 4.5e-05 23.4 0.0 0.00012 22.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain Pox_VLTF3 PF04947.9 gi|325969016|ref|YP_004245208.1| - 0.0084 15.6 0.2 0.01 15.3 0.1 1.2 1 0 0 1 1 1 1 Poxvirus Late Transcription Factor VLTF3 like AAA_25 PF13481.1 gi|325969016|ref|YP_004245208.1| - 0.12 11.7 0.3 0.88 8.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|325969016|ref|YP_004245208.1| - 0.15 11.3 0.2 0.26 10.5 0.1 1.4 1 0 0 1 1 1 0 YhjQ protein ALIX_LYPXL_bnd PF13949.1 gi|325969017|ref|YP_004245209.1| - 0.0018 17.2 1.2 0.002 17.1 0.9 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV NPV_P10 PF05531.7 gi|325969017|ref|YP_004245209.1| - 0.0021 18.2 0.7 0.0036 17.5 0.4 1.5 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Effector_1 PF04518.7 gi|325969017|ref|YP_004245209.1| - 0.0033 16.4 0.4 0.004 16.1 0.3 1.2 1 0 0 1 1 1 1 Effector from type III secretion system BLOC1_2 PF10046.4 gi|325969017|ref|YP_004245209.1| - 0.0037 17.3 2.7 0.02 15.0 0.8 2.0 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 HOOK PF05622.7 gi|325969017|ref|YP_004245209.1| - 0.013 13.3 1.2 0.013 13.3 0.8 1.1 1 0 0 1 1 1 0 HOOK protein Baculo_PEP_C PF04513.7 gi|325969017|ref|YP_004245209.1| - 0.017 14.9 1.2 0.026 14.3 0.8 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF935 PF06074.7 gi|325969017|ref|YP_004245209.1| - 0.017 13.8 0.1 0.019 13.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF935) TMF_TATA_bd PF12325.3 gi|325969017|ref|YP_004245209.1| - 0.019 14.7 1.5 0.019 14.7 1.1 1.5 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF2205 PF10224.4 gi|325969017|ref|YP_004245209.1| - 0.029 13.9 0.8 0.085 12.4 0.1 2.0 1 1 1 2 2 2 0 Predicted coiled-coil protein (DUF2205) Prefoldin PF02996.12 gi|325969017|ref|YP_004245209.1| - 0.042 13.4 1.6 1.5 8.4 1.1 2.4 1 1 0 1 1 1 0 Prefoldin subunit Syntaxin PF00804.20 gi|325969017|ref|YP_004245209.1| - 0.086 13.0 2.4 0.3 11.2 1.2 2.2 1 1 1 2 2 2 0 Syntaxin Cortex-I_coil PF09304.5 gi|325969017|ref|YP_004245209.1| - 0.088 12.8 2.0 0.14 12.1 0.3 1.9 1 1 1 2 2 2 0 Cortexillin I, coiled coil AAA_23 PF13476.1 gi|325969017|ref|YP_004245209.1| - 0.1 12.9 6.5 0.12 12.6 4.5 1.0 1 0 0 1 1 1 0 AAA domain Med4 PF10018.4 gi|325969017|ref|YP_004245209.1| - 0.14 11.5 1.2 0.16 11.3 0.5 1.3 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Phasin PF05597.6 gi|325969017|ref|YP_004245209.1| - 0.16 11.7 0.8 0.94 9.2 0.6 1.9 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF342 PF03961.8 gi|325969017|ref|YP_004245209.1| - 0.16 10.3 2.7 0.16 10.3 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Spectrin PF00435.16 gi|325969017|ref|YP_004245209.1| - 0.16 12.2 1.8 1.7 8.9 0.1 2.6 1 1 2 3 3 3 0 Spectrin repeat DASH_Dad1 PF08649.5 gi|325969017|ref|YP_004245209.1| - 0.22 11.2 1.2 19 5.0 0.6 2.2 1 1 1 2 2 2 0 DASH complex subunit Dad1 Matrilin_ccoil PF10393.4 gi|325969017|ref|YP_004245209.1| - 0.31 10.4 1.6 5.9 6.3 0.4 2.6 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin FlaC_arch PF05377.6 gi|325969017|ref|YP_004245209.1| - 0.53 10.2 3.3 12 5.8 0.0 2.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Prefoldin_2 PF01920.15 gi|325969017|ref|YP_004245209.1| - 1.7 8.4 6.7 3.6 7.3 0.0 2.5 2 1 1 3 3 3 0 Prefoldin subunit T2SE PF00437.15 gi|325969018|ref|YP_004245210.1| - 1.6e-19 69.8 0.0 2.5e-19 69.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein Sigma54_activ_2 PF14532.1 gi|325969018|ref|YP_004245210.1| - 0.00049 20.1 0.0 0.00081 19.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_29 PF13555.1 gi|325969018|ref|YP_004245210.1| - 0.0023 17.4 0.2 0.0049 16.3 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|325969018|ref|YP_004245210.1| - 0.0029 18.4 0.2 0.0081 16.9 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|325969018|ref|YP_004245210.1| - 0.0069 16.1 0.0 0.019 14.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|325969018|ref|YP_004245210.1| - 0.009 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|325969018|ref|YP_004245210.1| - 0.027 14.3 0.0 0.054 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|325969018|ref|YP_004245210.1| - 0.041 13.0 0.2 0.13 11.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|325969018|ref|YP_004245210.1| - 0.062 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|325969018|ref|YP_004245210.1| - 0.08 12.6 0.0 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Gtr1_RagA PF04670.7 gi|325969018|ref|YP_004245210.1| - 0.081 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_24 PF13479.1 gi|325969018|ref|YP_004245210.1| - 0.087 12.3 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|325969018|ref|YP_004245210.1| - 0.09 12.9 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|325969018|ref|YP_004245210.1| - 0.092 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.12 gi|325969018|ref|YP_004245210.1| - 0.12 11.8 0.0 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|325969018|ref|YP_004245210.1| - 0.15 12.3 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|325969018|ref|YP_004245210.1| - 0.16 11.5 0.1 0.23 10.9 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|325969018|ref|YP_004245210.1| - 0.2 11.2 0.1 0.34 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|325969019|ref|YP_004245211.1| - 2.6e-15 56.3 0.0 3.3e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|325969019|ref|YP_004245211.1| - 7.2e-07 28.5 0.1 1.1e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|325969019|ref|YP_004245211.1| - 2.9e-06 27.2 0.0 4.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|325969019|ref|YP_004245211.1| - 0.00064 18.8 0.0 0.004 16.2 0.0 2.0 2 0 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|325969019|ref|YP_004245211.1| - 0.004 16.5 0.0 0.0069 15.7 0.0 1.6 1 1 0 1 1 1 1 YhjQ protein VirC1 PF07015.6 gi|325969019|ref|YP_004245211.1| - 0.012 14.7 0.0 0.022 13.8 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein Fer4_NifH PF00142.13 gi|325969019|ref|YP_004245211.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_5 PF07728.9 gi|325969019|ref|YP_004245211.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF4083 PF13314.1 gi|325969021|ref|YP_004245213.1| - 0.064 13.1 0.3 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF1628 PF07790.6 gi|325969021|ref|YP_004245213.1| - 0.15 12.8 2.9 0.28 11.9 2.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Pterin_4a PF01329.14 gi|325969022|ref|YP_004245214.1| - 7.7e-26 89.6 0.0 9.4e-26 89.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase APG6 PF04111.7 gi|325969023|ref|YP_004245215.1| - 0.00063 18.8 5.9 0.00084 18.4 4.1 1.1 1 0 0 1 1 1 1 Autophagy protein Apg6 EzrA PF06160.7 gi|325969023|ref|YP_004245215.1| - 0.0052 15.0 5.9 0.017 13.3 3.9 1.7 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA V_ATPase_I PF01496.14 gi|325969023|ref|YP_004245215.1| - 0.0056 14.6 1.4 0.0071 14.2 1.0 1.2 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family zf-C4H2 PF10146.4 gi|325969023|ref|YP_004245215.1| - 0.006 16.6 0.5 0.0063 16.5 0.4 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein ERM PF00769.14 gi|325969023|ref|YP_004245215.1| - 0.0081 15.7 4.3 0.012 15.2 2.9 1.2 1 0 0 1 1 1 1 Ezrin/radixin/moesin family DUF948 PF06103.6 gi|325969023|ref|YP_004245215.1| - 0.0087 15.9 4.9 0.36 10.7 1.8 2.7 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) Pyr_redox PF00070.22 gi|325969023|ref|YP_004245215.1| - 0.013 15.8 0.1 0.046 14.1 0.0 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Spc7 PF08317.6 gi|325969023|ref|YP_004245215.1| - 0.013 14.1 7.1 0.018 13.7 4.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|325969023|ref|YP_004245215.1| - 0.017 15.4 8.3 0.28 11.5 1.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF3450 PF11932.3 gi|325969023|ref|YP_004245215.1| - 0.019 14.2 1.1 0.019 14.2 0.8 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) Mod_r PF07200.8 gi|325969023|ref|YP_004245215.1| - 0.028 14.3 4.1 0.56 10.1 3.4 2.0 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Cbl_N PF02262.11 gi|325969023|ref|YP_004245215.1| - 0.028 14.1 1.1 0.2 11.3 0.1 2.2 1 1 1 2 2 2 0 CBL proto-oncogene N-terminal domain 1 Baculo_PEP_C PF04513.7 gi|325969023|ref|YP_004245215.1| - 0.03 14.1 7.6 0.39 10.5 4.6 2.6 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus MitMem_reg PF13012.1 gi|325969023|ref|YP_004245215.1| - 0.03 14.3 2.3 0.12 12.5 1.6 2.1 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function Lectin_N PF03954.9 gi|325969023|ref|YP_004245215.1| - 0.042 13.2 0.5 0.22 10.9 0.0 2.0 1 1 1 2 2 2 0 Hepatic lectin, N-terminal domain DUF3829 PF12889.2 gi|325969023|ref|YP_004245215.1| - 0.072 12.2 1.4 0.32 10.1 1.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) YhzD PF14120.1 gi|325969023|ref|YP_004245215.1| - 0.075 12.9 0.0 0.21 11.5 0.0 1.7 1 0 0 1 1 1 0 YhzD-like protein Snapin_Pallidin PF14712.1 gi|325969023|ref|YP_004245215.1| - 0.075 13.3 6.0 2.4 8.5 1.3 2.5 1 1 1 2 2 2 0 Snapin/Pallidin RmuC PF02646.11 gi|325969023|ref|YP_004245215.1| - 0.078 11.8 4.2 0.39 9.5 0.4 2.1 1 1 1 2 2 2 0 RmuC family DUF869 PF05911.6 gi|325969023|ref|YP_004245215.1| - 0.08 11.1 5.0 0.11 10.7 3.5 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) CCDC155 PF14662.1 gi|325969023|ref|YP_004245215.1| - 0.11 12.0 8.0 0.052 13.1 0.9 2.0 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 CENP-F_leu_zip PF10473.4 gi|325969023|ref|YP_004245215.1| - 0.13 12.1 8.4 0.28 11.0 5.7 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Herpes_U30 PF04523.8 gi|325969023|ref|YP_004245215.1| - 0.19 9.1 1.3 0.24 8.7 0.9 1.1 1 0 0 1 1 1 0 Herpes virus tegument protein U30 TBPIP PF07106.8 gi|325969023|ref|YP_004245215.1| - 0.19 11.2 8.4 0.15 11.5 4.2 1.8 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Bacillus_HBL PF05791.6 gi|325969023|ref|YP_004245215.1| - 0.22 10.8 4.5 0.13 11.6 1.0 1.9 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Nup88 PF10168.4 gi|325969023|ref|YP_004245215.1| - 0.22 9.3 4.8 0.28 8.9 3.3 1.1 1 0 0 1 1 1 0 Nuclear pore component DUF2312 PF10073.4 gi|325969023|ref|YP_004245215.1| - 0.26 10.6 6.0 3 7.2 0.4 2.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF1664 PF07889.7 gi|325969023|ref|YP_004245215.1| - 0.31 10.8 7.4 0.36 10.6 1.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) IncA PF04156.9 gi|325969023|ref|YP_004245215.1| - 0.33 10.5 7.9 0.74 9.3 5.5 1.5 1 1 0 1 1 1 0 IncA protein DUF3461 PF11944.3 gi|325969023|ref|YP_004245215.1| - 0.35 10.7 6.4 7.2 6.4 2.3 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3461) UPF0449 PF15136.1 gi|325969023|ref|YP_004245215.1| - 0.39 10.9 4.2 2.3 8.4 0.2 2.4 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 Prominin PF05478.6 gi|325969023|ref|YP_004245215.1| - 0.51 7.7 4.9 2.7 5.4 0.3 1.8 1 1 1 2 2 2 0 Prominin Cauli_AT PF03233.8 gi|325969023|ref|YP_004245215.1| - 0.59 9.8 5.3 1.7 8.2 3.7 1.7 1 1 0 1 1 1 0 Aphid transmission protein DUF2951 PF11166.3 gi|325969023|ref|YP_004245215.1| - 2.1 8.2 10.5 1.2 9.0 4.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2951) COG2 PF06148.6 gi|325969023|ref|YP_004245215.1| - 2.1 8.2 6.5 9.9 6.0 0.1 2.7 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Syntaxin_2 PF14523.1 gi|325969023|ref|YP_004245215.1| - 2.3 8.2 8.2 9.2 6.3 3.6 2.3 1 1 1 2 2 2 0 Syntaxin-like protein Fib_alpha PF08702.5 gi|325969023|ref|YP_004245215.1| - 3.6 7.6 6.3 5.3 7.1 4.4 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF2570 PF10828.3 gi|325969023|ref|YP_004245215.1| - 4.3 6.9 9.7 20 4.8 2.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2570) DUF904 PF06005.7 gi|325969023|ref|YP_004245215.1| - 7.2 6.9 13.5 71 3.7 9.4 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF904) Bac_Ubq_Cox PF01654.12 gi|325969024|ref|YP_004245216.1| - 1.4e-11 43.5 15.0 1.4e-11 43.5 10.4 2.4 1 1 1 2 2 2 2 Bacterial Cytochrome Ubiquinol Oxidase COX7C PF02935.11 gi|325969024|ref|YP_004245216.1| - 0.32 10.8 2.4 1.2 8.9 1.7 2.0 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc Bac_Ubq_Cox PF01654.12 gi|325969025|ref|YP_004245217.1| - 4e-63 213.3 34.3 3.8e-62 210.1 23.8 2.0 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase EVE PF01878.13 gi|325969026|ref|YP_004245218.1| - 0.0038 17.2 0.0 0.0064 16.5 0.0 1.5 1 0 0 1 1 1 1 EVE domain Plant_NMP1 PF06694.6 gi|325969026|ref|YP_004245218.1| - 0.013 14.4 0.0 0.33 9.8 0.0 2.0 2 0 0 2 2 2 0 Plant nuclear matrix protein 1 (NMP1) BTAD PF03704.12 gi|325969026|ref|YP_004245218.1| - 0.055 13.7 1.2 0.1 12.9 0.8 1.4 1 0 0 1 1 1 0 Bacterial transcriptional activator domain MFS_1 PF07690.11 gi|325969027|ref|YP_004245219.1| - 1.3e-22 80.0 56.9 1.3e-22 80.0 39.4 2.6 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325969027|ref|YP_004245219.1| - 3.6e-18 65.3 40.4 4.8e-16 58.3 10.2 3.4 1 1 2 3 3 3 3 Sugar (and other) transporter PLDc_2 PF13091.1 gi|325969028|ref|YP_004245220.1| - 4.5e-13 49.0 0.0 7.8e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain EVE PF01878.13 gi|325969029|ref|YP_004245221.1| - 0.00017 21.6 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 EVE domain ABC2_membrane_2 PF12679.2 gi|325969030|ref|YP_004245222.1| - 0.2 10.5 16.5 0.17 10.7 2.4 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF2721 PF11026.3 gi|325969030|ref|YP_004245222.1| - 2.6 7.6 19.9 0.73 9.4 6.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) PDT PF00800.13 gi|325969031|ref|YP_004245223.1| - 5.4e-42 143.3 0.0 6.9e-42 143.0 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|325969031|ref|YP_004245223.1| - 6.3e-05 22.3 0.0 0.00021 20.6 0.0 1.9 2 0 0 2 2 2 1 ACT domain Iso_dh PF00180.15 gi|325969032|ref|YP_004245224.1| - 7.1e-100 334.3 0.1 8e-100 334.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|325969032|ref|YP_004245224.1| - 0.0051 16.0 0.0 0.0079 15.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Cupin_2 PF07883.6 gi|325969033|ref|YP_004245225.1| - 7.8e-15 54.1 0.4 1.1e-14 53.7 0.3 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|325969033|ref|YP_004245225.1| - 2.3e-11 43.5 0.4 4e-11 42.7 0.1 1.5 1 1 1 2 2 2 1 AraC-like ligand binding domain ARD PF03079.9 gi|325969033|ref|YP_004245225.1| - 2e-08 34.3 0.1 2.3e-08 34.1 0.1 1.1 1 0 0 1 1 1 1 ARD/ARD' family Cupin_1 PF00190.17 gi|325969033|ref|YP_004245225.1| - 4.5e-06 26.1 0.8 6e-06 25.7 0.6 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|325969033|ref|YP_004245225.1| - 0.0011 18.6 0.1 0.0011 18.5 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_8 PF13621.1 gi|325969033|ref|YP_004245225.1| - 0.0013 18.2 0.4 0.15 11.5 0.0 2.0 1 1 1 2 2 2 2 Cupin-like domain DUF1498 PF07385.7 gi|325969033|ref|YP_004245225.1| - 0.008 15.3 0.0 0.0083 15.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1498) Cupin_3 PF05899.7 gi|325969033|ref|YP_004245225.1| - 0.01 15.2 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|325969033|ref|YP_004245225.1| - 0.028 13.9 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_4 PF08007.7 gi|325969033|ref|YP_004245225.1| - 0.043 13.0 0.0 0.049 12.8 0.0 1.1 1 0 0 1 1 1 0 Cupin superfamily protein CENP-C_C PF11699.3 gi|325969033|ref|YP_004245225.1| - 0.096 12.6 0.2 0.15 12.0 0.1 1.3 1 1 0 1 1 1 0 Mif2/CENP-C like DUF1971 PF09313.6 gi|325969033|ref|YP_004245225.1| - 0.13 12.0 0.1 0.22 11.2 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1971) Cupin_6 PF12852.2 gi|325969033|ref|YP_004245225.1| - 0.15 11.6 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Cupin HMGL-like PF00682.14 gi|325969034|ref|YP_004245226.1| - 2.2e-73 246.8 2.5 2.9e-73 246.4 1.7 1.2 1 0 0 1 1 1 1 HMGL-like UPF0154 PF03672.8 gi|325969034|ref|YP_004245226.1| - 0.044 13.4 0.1 1.6 8.4 0.0 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0154) TPP_enzyme_N PF02776.13 gi|325969035|ref|YP_004245227.1| - 7.3e-55 185.0 0.1 2.3e-54 183.4 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|325969035|ref|YP_004245227.1| - 5.6e-43 146.1 0.0 5.4e-42 142.9 0.0 2.6 2 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|325969035|ref|YP_004245227.1| - 3.1e-41 140.3 0.0 7.6e-41 139.0 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain ACT_5 PF13710.1 gi|325969036|ref|YP_004245228.1| - 9e-13 47.8 0.2 1.2e-12 47.4 0.1 1.2 1 0 0 1 1 1 1 ACT domain IlvN PF07991.7 gi|325969037|ref|YP_004245229.1| - 9.7e-67 223.4 0.1 1.8e-66 222.6 0.0 1.4 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|325969037|ref|YP_004245229.1| - 3.2e-45 153.5 0.4 4.9e-45 153.0 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|325969037|ref|YP_004245229.1| - 3.2e-06 26.4 0.3 1.5e-05 24.2 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|325969037|ref|YP_004245229.1| - 2.8e-05 24.0 0.0 5.9e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|325969037|ref|YP_004245229.1| - 5.3e-05 23.5 0.0 0.00014 22.1 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|325969037|ref|YP_004245229.1| - 0.00022 21.0 0.0 0.0004 20.2 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|325969037|ref|YP_004245229.1| - 0.0024 17.3 0.0 0.0056 16.1 0.0 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA CoA_binding PF02629.14 gi|325969037|ref|YP_004245229.1| - 0.0081 16.6 0.0 0.025 15.0 0.0 1.8 1 0 0 1 1 1 1 CoA binding domain NusB PF01029.13 gi|325969037|ref|YP_004245229.1| - 0.1 12.6 0.3 0.22 11.5 0.0 1.7 2 0 0 2 2 2 0 NusB family Aconitase PF00330.15 gi|325969038|ref|YP_004245230.1| - 3.7e-69 233.4 0.2 1e-45 156.0 0.0 2.3 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|325969038|ref|YP_004245230.1| - 0.002 16.7 0.0 0.003 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PGM_PMM_I PF02878.11 gi|325969038|ref|YP_004245230.1| - 0.021 14.2 0.0 0.051 13.0 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Dimerisation PF08100.6 gi|325969038|ref|YP_004245230.1| - 0.071 12.9 0.0 2.6 7.9 0.0 2.6 2 0 0 2 2 2 0 Dimerisation domain Telomere_Sde2 PF13019.1 gi|325969039|ref|YP_004245231.1| - 0.001 18.8 0.1 0.0029 17.3 0.0 1.7 2 0 0 2 2 2 1 Telomere stability and silencing Aconitase_C PF00694.14 gi|325969040|ref|YP_004245232.1| - 1.5e-19 70.3 0.0 2.2e-19 69.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|325969040|ref|YP_004245232.1| - 0.0058 16.0 0.5 0.11 11.9 0.1 2.2 1 1 1 2 2 2 2 Aconitate hydratase 2 N-terminus HMGL-like PF00682.14 gi|325969041|ref|YP_004245233.1| - 7.8e-39 133.7 0.1 1.2e-38 133.1 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|325969041|ref|YP_004245233.1| - 1e-21 77.1 0.1 2.7e-21 75.7 0.0 1.8 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain PEP_mutase PF13714.1 gi|325969041|ref|YP_004245233.1| - 0.025 13.7 0.2 0.045 12.9 0.1 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase AA_kinase PF00696.23 gi|325969042|ref|YP_004245234.1| - 2.4e-39 135.3 0.0 3.6e-39 134.7 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family Chlorophyllase2 PF12740.2 gi|325969042|ref|YP_004245234.1| - 0.012 14.5 0.0 0.017 14.0 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Chlorophyllase PF07224.6 gi|325969042|ref|YP_004245234.1| - 0.079 11.7 0.0 0.13 11.0 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase Semialdhyde_dh PF01118.19 gi|325969043|ref|YP_004245235.1| - 3.5e-28 98.3 0.0 5.4e-28 97.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|325969043|ref|YP_004245235.1| - 1e-22 80.8 0.0 1.6e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|325969043|ref|YP_004245235.1| - 0.095 12.6 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Homoserine_dh PF00742.14 gi|325969044|ref|YP_004245236.1| - 5.7e-47 159.6 0.0 7.7e-47 159.2 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|325969044|ref|YP_004245236.1| - 5.4e-08 33.2 0.0 1.2e-07 32.1 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|325969044|ref|YP_004245236.1| - 0.0033 16.4 0.0 0.0065 15.4 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|325969044|ref|YP_004245236.1| - 0.044 13.1 0.0 0.076 12.3 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PALP PF00291.20 gi|325969045|ref|YP_004245237.1| - 1.2e-68 231.6 0.4 1.5e-68 231.3 0.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme OrfB_Zn_ribbon PF07282.6 gi|325969045|ref|YP_004245237.1| - 0.0021 17.6 0.1 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PK_C PF02887.11 gi|325969045|ref|YP_004245237.1| - 0.0021 17.5 0.3 0.33 10.5 0.1 2.4 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain zf-ribbon_3 PF13248.1 gi|325969045|ref|YP_004245237.1| - 0.0024 17.0 2.8 0.028 13.6 2.2 2.2 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.14 gi|325969045|ref|YP_004245237.1| - 0.0068 16.0 0.1 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-NADH-PPase PF09297.6 gi|325969045|ref|YP_004245237.1| - 0.011 15.2 0.9 0.025 14.0 0.6 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|325969045|ref|YP_004245237.1| - 0.012 14.9 3.0 0.015 14.6 1.0 2.0 2 1 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|325969045|ref|YP_004245237.1| - 0.019 14.4 4.0 1.6 8.2 4.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|325969045|ref|YP_004245237.1| - 0.045 13.5 0.2 0.088 12.6 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|325969045|ref|YP_004245237.1| - 0.12 12.0 0.2 0.2 11.3 0.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Mu-like_Com PF10122.4 gi|325969045|ref|YP_004245237.1| - 0.15 11.1 1.6 12 5.0 0.1 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_5 PF13719.1 gi|325969045|ref|YP_004245237.1| - 0.45 10.1 2.7 25 4.5 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|325969045|ref|YP_004245237.1| - 0.54 10.0 6.1 1.7 8.3 4.2 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|325969045|ref|YP_004245237.1| - 0.55 10.0 3.0 11 5.9 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|325969045|ref|YP_004245237.1| - 1.1 9.0 3.3 29 4.4 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|325969045|ref|YP_004245237.1| - 3.2 7.5 5.2 25 4.6 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS MFS_1 PF07690.11 gi|325969046|ref|YP_004245238.1| - 6.2e-21 74.4 52.8 6.2e-21 74.4 36.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325969046|ref|YP_004245238.1| - 1.2e-15 57.0 34.1 1.2e-14 53.7 11.2 3.0 2 1 1 3 3 3 3 Sugar (and other) transporter Semialdhyde_dh PF01118.19 gi|325969047|ref|YP_004245239.1| - 3.8e-34 117.6 0.0 6e-34 116.9 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|325969047|ref|YP_004245239.1| - 6e-15 55.5 0.0 1.3e-14 54.4 0.0 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|325969047|ref|YP_004245239.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|325969047|ref|YP_004245239.1| - 0.0045 17.4 0.0 0.0085 16.6 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DUF4021 PF13213.1 gi|325969047|ref|YP_004245239.1| - 0.17 11.5 0.2 7.1 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4021) RimK PF08443.6 gi|325969049|ref|YP_004245241.1| - 2e-42 144.8 0.0 2.6e-42 144.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|325969049|ref|YP_004245241.1| - 5.6e-13 48.4 0.0 1.2e-12 47.3 0.0 1.6 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|325969049|ref|YP_004245241.1| - 3.4e-10 40.0 0.0 7.3e-10 38.9 0.0 1.5 1 1 1 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325969049|ref|YP_004245241.1| - 8.4e-07 28.8 0.0 1.1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|325969049|ref|YP_004245241.1| - 7.8e-06 25.4 0.0 0.023 14.0 0.0 2.2 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus HMGL-like PF00682.14 gi|325969050|ref|YP_004245242.1| - 9.5e-30 103.9 0.0 1.5e-29 103.3 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Peptidase_M20 PF01546.23 gi|325969051|ref|YP_004245243.1| - 1.3e-25 89.9 0.0 1.6e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|325969051|ref|YP_004245243.1| - 3e-13 49.5 0.0 5.4e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain RimK PF08443.6 gi|325969052|ref|YP_004245244.1| - 9e-48 162.2 0.0 1.2e-47 161.8 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|325969052|ref|YP_004245244.1| - 2.6e-12 46.2 0.0 4.1e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325969052|ref|YP_004245244.1| - 6.5e-12 45.5 0.0 1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|325969052|ref|YP_004245244.1| - 1.5e-09 37.0 0.0 2.1e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|325969052|ref|YP_004245244.1| - 4.6e-09 36.3 0.0 6.9e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|325969052|ref|YP_004245244.1| - 0.00061 19.1 0.0 0.0023 17.2 0.0 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|325969052|ref|YP_004245244.1| - 0.02 14.2 0.0 0.05 12.9 0.0 1.6 2 0 0 2 2 2 0 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|325969052|ref|YP_004245244.1| - 0.03 13.1 0.0 1.1 8.0 0.0 2.2 2 0 0 2 2 2 0 YheC/D like ATP-grasp DNA_pol_B_palm PF14792.1 gi|325969052|ref|YP_004245244.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase beta palm zinc_ribbon_5 PF13719.1 gi|325969053|ref|YP_004245245.1| - 2.2e-05 23.9 0.9 0.05 13.1 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|325969053|ref|YP_004245245.1| - 3.1e-05 23.5 0.8 0.081 12.6 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|325969053|ref|YP_004245245.1| - 0.00048 20.0 0.2 0.00067 19.5 0.1 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|325969053|ref|YP_004245245.1| - 0.00053 19.6 0.1 0.00057 19.5 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|325969053|ref|YP_004245245.1| - 0.00099 18.5 0.9 0.059 12.8 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-HYPF PF07503.7 gi|325969053|ref|YP_004245245.1| - 0.002 17.5 0.7 0.52 9.7 0.0 2.1 2 0 0 2 2 2 2 HypF finger zf-ribbon_3 PF13248.1 gi|325969053|ref|YP_004245245.1| - 0.0024 17.0 4.2 0.023 13.9 3.0 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|325969053|ref|YP_004245245.1| - 0.0029 17.3 0.5 0.0041 16.9 0.3 1.3 1 1 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|325969053|ref|YP_004245245.1| - 0.0094 15.6 2.9 0.025 14.3 2.0 1.6 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 Cys_rich_CPXG PF14255.1 gi|325969053|ref|YP_004245245.1| - 0.015 15.1 1.1 1.2 9.0 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG Elf1 PF05129.8 gi|325969053|ref|YP_004245245.1| - 0.02 14.5 0.9 0.082 12.6 0.6 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ISL3 PF14690.1 gi|325969053|ref|YP_004245245.1| - 0.023 14.7 0.2 0.92 9.5 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PHD PF00628.24 gi|325969053|ref|YP_004245245.1| - 0.029 14.0 0.9 0.04 13.6 0.6 1.2 1 0 0 1 1 1 0 PHD-finger OrfB_Zn_ribbon PF07282.6 gi|325969053|ref|YP_004245245.1| - 0.042 13.5 0.1 0.062 12.9 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain ADK_lid PF05191.9 gi|325969053|ref|YP_004245245.1| - 0.046 13.3 0.3 0.92 9.2 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-dskA_traR PF01258.12 gi|325969053|ref|YP_004245245.1| - 0.11 12.2 2.1 2.1 8.1 0.1 2.1 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Cys_rich_KTR PF14205.1 gi|325969053|ref|YP_004245245.1| - 0.11 11.9 1.5 0.5 9.8 0.0 2.4 2 1 1 3 3 3 0 Cysteine-rich KTR zf-LITAF-like PF10601.4 gi|325969053|ref|YP_004245245.1| - 0.11 12.3 1.1 6.9 6.6 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain CpXC PF14353.1 gi|325969053|ref|YP_004245245.1| - 0.11 12.3 0.9 1.1 9.2 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-CSL PF05207.8 gi|325969053|ref|YP_004245245.1| - 0.12 11.8 0.9 0.21 11.1 0.6 1.4 1 0 0 1 1 1 0 CSL zinc finger TFIIS_C PF01096.13 gi|325969053|ref|YP_004245245.1| - 0.18 11.4 1.1 1.6 8.3 0.1 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.1 gi|325969053|ref|YP_004245245.1| - 0.2 12.0 2.5 1.3 9.3 1.7 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1 PF03811.8 gi|325969053|ref|YP_004245245.1| - 0.21 11.1 1.7 0.39 10.2 0.1 1.9 2 0 0 2 2 2 0 InsA N-terminal domain TerY-C PF15616.1 gi|325969053|ref|YP_004245245.1| - 0.21 11.5 1.0 0.64 9.9 0.0 1.8 1 1 1 2 2 2 0 TerY-C metal binding domain zf-C2HC_2 PF13913.1 gi|325969053|ref|YP_004245245.1| - 0.23 11.1 3.5 0.24 11.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DNA_RNApol_7kD PF03604.8 gi|325969053|ref|YP_004245245.1| - 0.25 10.8 2.3 1.8 8.0 1.4 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-UDP PF14569.1 gi|325969053|ref|YP_004245245.1| - 0.34 10.6 2.2 0.71 9.6 1.5 1.5 1 1 0 1 1 1 0 Zinc-binding RING-finger YhfH PF14149.1 gi|325969053|ref|YP_004245245.1| - 0.36 10.6 1.6 10 6.0 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein Nudix_N_2 PF14803.1 gi|325969053|ref|YP_004245245.1| - 0.4 10.3 1.8 8.5 6.1 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF3797 PF12677.2 gi|325969053|ref|YP_004245245.1| - 0.59 9.8 3.4 2.7 7.6 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) AA_kinase PF00696.23 gi|325969054|ref|YP_004245246.1| - 1e-36 126.6 0.7 1.2e-36 126.5 0.5 1.0 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_1_2 PF00155.16 gi|325969055|ref|YP_004245247.1| - 2.3e-56 191.2 0.0 2.6e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|325969055|ref|YP_004245247.1| - 1.4e-08 33.4 0.0 2.4e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|325969055|ref|YP_004245247.1| - 5.3e-05 22.4 0.0 9.4e-05 21.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|325969055|ref|YP_004245247.1| - 8.3e-05 21.4 0.0 0.00015 20.6 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V RNase_Zc3h12a PF11977.3 gi|325969055|ref|YP_004245247.1| - 0.0061 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Zc3h12a-like Ribonuclease NYN domain CPSase_sm_chain PF00988.17 gi|325969056|ref|YP_004245248.1| - 3.5e-45 152.6 0.0 6.8e-45 151.7 0.0 1.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|325969056|ref|YP_004245248.1| - 7e-39 133.2 0.0 9.8e-39 132.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|325969056|ref|YP_004245248.1| - 1.4e-08 34.5 0.5 3e-06 26.8 0.2 2.6 1 1 1 2 2 2 1 Peptidase C26 CPSase_L_D2 PF02786.12 gi|325969057|ref|YP_004245249.1| - 3.3e-90 301.0 0.0 6.2e-59 198.8 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|325969057|ref|YP_004245249.1| - 1.3e-31 109.8 0.0 2.8e-15 56.5 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_chain PF00289.17 gi|325969057|ref|YP_004245249.1| - 2.5e-28 98.3 0.0 2e-17 63.2 0.0 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain CPSase_L_D3 PF02787.14 gi|325969057|ref|YP_004245249.1| - 1.6e-23 82.7 0.0 4.3e-23 81.3 0.0 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|325969057|ref|YP_004245249.1| - 5.2e-21 74.7 0.0 2.5e-11 42.8 0.0 4.0 2 2 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|325969057|ref|YP_004245249.1| - 8.9e-10 38.1 0.0 8.6e-06 25.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|325969057|ref|YP_004245249.1| - 3.4e-09 36.4 0.0 0.0011 18.3 0.0 2.7 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|325969057|ref|YP_004245249.1| - 8.7e-09 35.1 0.0 0.00022 20.7 0.0 3.6 4 0 0 4 4 4 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|325969057|ref|YP_004245249.1| - 8.1e-08 32.2 0.0 0.00043 20.1 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|325969057|ref|YP_004245249.1| - 0.00018 20.8 0.0 0.0027 16.9 0.0 2.4 2 0 0 2 2 2 1 ATP-grasp domain Lyase_1 PF00206.15 gi|325969058|ref|YP_004245250.1| - 2e-32 112.6 0.0 2.8e-32 112.1 0.0 1.1 1 0 0 1 1 1 1 Lyase PaREP1 PF05942.6 gi|325969059|ref|YP_004245251.1| - 9.8e-06 25.4 0.0 1.1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Tenui_N PF05733.6 gi|325969059|ref|YP_004245251.1| - 0.1 11.8 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Tenuivirus/Phlebovirus nucleocapsid protein PaREP1 PF05942.6 gi|325969060|ref|YP_004245252.1| - 1.8e-17 63.2 0.4 2.7e-17 62.6 0.3 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.1 gi|325969060|ref|YP_004245252.1| - 0.14 12.2 0.6 0.22 11.6 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) Arginosuc_synth PF00764.14 gi|325969061|ref|YP_004245253.1| - 2.4e-129 431.7 0.0 2.8e-129 431.5 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Peptidase_M16_C PF05193.16 gi|325969062|ref|YP_004245254.1| - 1.9e-10 40.7 0.0 3.8e-10 39.7 0.0 1.6 1 1 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.15 gi|325969062|ref|YP_004245254.1| - 0.069 12.9 0.0 0.2 11.4 0.0 1.8 2 1 0 2 2 2 0 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|325969063|ref|YP_004245255.1| - 8e-18 64.7 0.0 1.5e-17 63.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.15 gi|325969063|ref|YP_004245255.1| - 2.9e-15 56.3 0.0 4.6e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Ribosomal_S10 PF00338.17 gi|325969064|ref|YP_004245256.1| - 7.1e-29 99.5 0.0 7.9e-29 99.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|325969065|ref|YP_004245257.1| - 6.6e-55 185.4 0.0 1.1e-54 184.7 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|325969065|ref|YP_004245257.1| - 1.1e-28 99.3 0.1 8.5e-28 96.4 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|325969065|ref|YP_004245257.1| - 5.1e-19 68.1 4.5 5.1e-19 68.1 3.1 2.9 4 0 0 4 4 4 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|325969065|ref|YP_004245257.1| - 7.7e-10 38.2 1.7 2.4e-09 36.7 1.2 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|325969065|ref|YP_004245257.1| - 2.7e-05 24.0 0.0 0.00011 22.1 0.0 2.0 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|325969065|ref|YP_004245257.1| - 0.00017 20.9 0.1 0.0099 15.1 0.0 3.1 2 1 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|325969065|ref|YP_004245257.1| - 0.0075 16.7 0.1 0.045 14.2 0.0 2.2 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|325969065|ref|YP_004245257.1| - 0.038 13.8 0.2 1.3 8.7 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Septin PF00735.13 gi|325969065|ref|YP_004245257.1| - 0.069 12.1 0.0 0.17 10.8 0.0 1.6 1 1 0 1 1 1 0 Septin COXG PF06240.8 gi|325969066|ref|YP_004245258.1| - 3.2e-34 117.5 0.0 3.6e-34 117.4 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.4 gi|325969066|ref|YP_004245258.1| - 2.3e-08 34.3 0.0 2.8e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|325969066|ref|YP_004245258.1| - 0.0006 19.8 0.0 0.00081 19.3 0.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Sugar_tr PF00083.19 gi|325969068|ref|YP_004245260.1| - 3.5e-09 35.7 5.1 4e-09 35.5 3.5 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325969068|ref|YP_004245260.1| - 6.2e-06 25.1 7.7 1.1e-05 24.3 5.3 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily YrvL PF14184.1 gi|325969068|ref|YP_004245260.1| - 0.0061 16.3 3.8 0.0061 16.3 2.7 1.5 1 1 0 1 1 1 1 Regulatory protein YrvL Tmemb_40 PF10160.4 gi|325969068|ref|YP_004245260.1| - 0.0091 15.2 2.1 0.0098 15.1 1.4 1.1 1 0 0 1 1 1 1 Predicted membrane protein MoCF_biosynth PF00994.19 gi|325969070|ref|YP_004245262.1| - 4.1e-31 107.3 0.2 5.1e-31 107.0 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain XdhC_C PF13478.1 gi|325969071|ref|YP_004245263.1| - 1.6e-23 83.5 0.0 2.2e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain Fer2_2 PF01799.15 gi|325969072|ref|YP_004245264.1| - 1.2e-34 118.0 0.7 2.5e-34 116.9 0.0 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|325969072|ref|YP_004245264.1| - 7e-06 25.7 0.4 7e-06 25.7 0.2 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|325969072|ref|YP_004245264.1| - 0.00035 20.3 0.1 0.00058 19.6 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.16 gi|325969073|ref|YP_004245265.1| - 3.3e-49 166.6 0.0 4.5e-49 166.1 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|325969073|ref|YP_004245265.1| - 3e-28 97.7 0.5 4.9e-28 97.0 0.4 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|325969074|ref|YP_004245266.1| - 1.5e-140 469.1 0.0 1.8e-140 468.8 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|325969074|ref|YP_004245266.1| - 2.6e-30 104.7 0.0 5.7e-30 103.6 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SpoIIIAH PF12685.2 gi|325969074|ref|YP_004245266.1| - 0.0062 16.0 0.2 0.0093 15.4 0.1 1.2 1 0 0 1 1 1 1 SpoIIIAH-like protein tRNA-synt_1 PF00133.17 gi|325969075|ref|YP_004245267.1| - 3.4e-65 220.2 0.0 1.2e-63 215.0 0.0 2.7 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|325969075|ref|YP_004245267.1| - 2.8e-20 72.3 1.0 6.2e-12 44.8 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|325969075|ref|YP_004245267.1| - 1.3e-19 70.4 1.0 3.1e-19 69.2 0.7 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|325969075|ref|YP_004245267.1| - 2.1e-09 36.9 0.1 1.3e-08 34.3 0.0 2.3 2 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|325969075|ref|YP_004245267.1| - 2.1e-08 33.6 0.0 0.00042 19.5 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|325969075|ref|YP_004245267.1| - 0.006 15.3 0.0 1.4 7.5 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|325969075|ref|YP_004245267.1| - 0.083 11.6 0.0 0.16 10.7 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (R) CBS PF00571.23 gi|325969076|ref|YP_004245268.1| - 3.3e-27 93.9 5.1 2.3e-13 49.6 0.3 2.1 2 0 0 2 2 2 2 CBS domain PDDEXK_1 PF12705.2 gi|325969078|ref|YP_004245270.1| - 0.00031 20.2 0.0 0.00058 19.3 0.0 1.4 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PK PF00224.16 gi|325969079|ref|YP_004245271.1| - 1.1e-85 287.3 0.8 1.4e-85 287.0 0.5 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|325969079|ref|YP_004245271.1| - 6.3e-18 64.4 0.0 6.5e-17 61.1 0.0 2.3 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|325969079|ref|YP_004245271.1| - 0.0015 17.4 0.2 0.0051 15.7 0.0 1.8 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Yip1 PF04893.12 gi|325969080|ref|YP_004245272.1| - 0.0046 16.4 2.2 0.0066 15.9 1.5 1.2 1 0 0 1 1 1 1 Yip1 domain R3H PF01424.17 gi|325969080|ref|YP_004245272.1| - 0.11 12.1 0.0 0.6 9.8 0.0 1.8 2 0 0 2 2 2 0 R3H domain DUF2244 PF10003.4 gi|325969080|ref|YP_004245272.1| - 0.13 11.6 0.8 0.23 10.8 0.6 1.5 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF3671 PF12420.3 gi|325969080|ref|YP_004245272.1| - 0.14 12.1 2.4 0.2 11.6 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function PRA1 PF03208.14 gi|325969081|ref|YP_004245273.1| - 0.0022 17.3 0.9 0.0033 16.7 0.6 1.3 1 0 0 1 1 1 1 PRA1 family protein DUF912 PF06024.7 gi|325969081|ref|YP_004245273.1| - 0.086 12.9 2.8 0.16 12.0 2.0 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Mem_trans PF03547.13 gi|325969081|ref|YP_004245273.1| - 0.14 10.4 1.0 0.19 9.9 0.7 1.1 1 0 0 1 1 1 0 Membrane transport protein GTP_EFTU PF00009.22 gi|325969082|ref|YP_004245274.1| - 1.1e-34 119.5 0.0 2.3e-34 118.5 0.0 1.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|325969082|ref|YP_004245274.1| - 4e-16 58.8 0.1 9.8e-16 57.5 0.1 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|325969082|ref|YP_004245274.1| - 1.9e-07 31.0 1.7 5.3e-07 29.6 1.2 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|325969082|ref|YP_004245274.1| - 0.00048 20.0 0.0 0.00096 19.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|325969082|ref|YP_004245274.1| - 0.011 16.1 0.0 0.06 13.8 0.0 2.1 1 1 0 1 1 1 0 Miro-like protein PduV-EutP PF10662.4 gi|325969082|ref|YP_004245274.1| - 0.014 14.8 0.2 4.1 6.8 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|325969082|ref|YP_004245274.1| - 0.047 12.9 0.3 9.7 5.4 0.2 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|325969082|ref|YP_004245274.1| - 0.13 11.4 0.0 4 6.6 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit GTP_EFTU_D4 PF14578.1 gi|325969082|ref|YP_004245274.1| - 0.44 10.2 3.3 8.3 6.1 1.3 3.3 2 1 0 2 2 2 0 Elongation factor Tu domain 4 Fcf1 PF04900.7 gi|325969083|ref|YP_004245275.1| - 2.1e-05 24.5 0.0 2.5e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Fcf1 Gln-synt_C PF00120.19 gi|325969084|ref|YP_004245276.1| - 2.5e-81 272.6 0.0 3.1e-81 272.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|325969084|ref|YP_004245276.1| - 1.6e-12 46.8 1.5 2.9e-12 45.9 0.2 2.1 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain DUF2281 PF10047.4 gi|325969085|ref|YP_004245277.1| - 0.0063 16.7 0.0 0.01 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2281) Thioredoxin PF00085.15 gi|325969086|ref|YP_004245278.1| - 6.5e-22 77.1 0.0 8.5e-22 76.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.1 gi|325969086|ref|YP_004245278.1| - 1.3e-06 28.4 0.0 0.016 15.3 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|325969086|ref|YP_004245278.1| - 2.1e-05 24.7 0.1 0.00061 19.9 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|325969086|ref|YP_004245278.1| - 0.0008 19.1 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|325969086|ref|YP_004245278.1| - 0.0033 16.9 0.2 0.0092 15.5 0.0 1.7 1 1 0 2 2 2 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|325969086|ref|YP_004245278.1| - 0.0036 17.3 0.0 0.0048 16.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|325969086|ref|YP_004245278.1| - 0.041 13.5 0.1 0.48 10.1 0.1 2.0 1 1 0 1 1 1 0 AhpC/TSA family Spt5-NGN PF03439.8 gi|325969086|ref|YP_004245278.1| - 0.091 12.5 0.1 0.31 10.8 0.0 1.8 2 0 0 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section HyaE PF07449.6 gi|325969086|ref|YP_004245278.1| - 0.095 12.6 0.0 0.16 11.8 0.0 1.5 1 1 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DIM1 PF02966.11 gi|325969086|ref|YP_004245278.1| - 0.12 11.8 0.1 0.23 10.9 0.0 1.5 1 1 0 1 1 1 0 Mitosis protein DIM1 TatD_DNase PF01026.16 gi|325969087|ref|YP_004245279.1| - 9.9e-22 77.3 0.0 1.1e-21 77.1 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase tRNA_m1G_MT PF01746.16 gi|325969088|ref|YP_004245280.1| - 1.2e-13 51.0 0.0 2.7e-13 49.9 0.0 1.6 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase Ribosomal_L34e PF01199.13 gi|325969089|ref|YP_004245281.1| - 6.3e-23 80.8 4.7 7.2e-23 80.6 3.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e zf-C4_ClpX PF06689.8 gi|325969089|ref|YP_004245281.1| - 0.019 14.4 0.0 0.16 11.4 0.0 2.0 2 0 0 2 2 2 0 ClpX C4-type zinc finger zf-P11 PF03854.9 gi|325969089|ref|YP_004245281.1| - 0.024 14.0 1.1 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 P-11 zinc finger zf-RING_2 PF13639.1 gi|325969089|ref|YP_004245281.1| - 0.027 14.3 0.2 0.32 10.8 0.1 2.3 2 1 0 2 2 2 0 Ring finger domain Zn_ribbon_recom PF13408.1 gi|325969089|ref|YP_004245281.1| - 0.088 13.0 0.7 0.088 13.0 0.5 1.7 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF4428 PF14471.1 gi|325969089|ref|YP_004245281.1| - 0.091 12.5 0.2 6.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DUF2197 PF09963.4 gi|325969089|ref|YP_004245281.1| - 0.15 12.0 0.6 0.23 11.4 0.0 1.7 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) EndIII_4Fe-2S PF10576.4 gi|325969089|ref|YP_004245281.1| - 0.63 10.3 0.3 0.63 10.3 0.2 2.4 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III Cytidylate_kin2 PF13189.1 gi|325969090|ref|YP_004245282.1| - 1.1e-23 84.0 6.2 3.4e-22 79.1 4.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|325969090|ref|YP_004245282.1| - 9.7e-15 55.0 1.2 1.7e-14 54.2 0.8 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325969090|ref|YP_004245282.1| - 6.5e-14 52.7 2.3 1.1e-13 52.0 1.6 1.6 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|325969090|ref|YP_004245282.1| - 3e-06 26.9 1.5 0.0047 16.5 0.0 2.2 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family SKI PF01202.17 gi|325969090|ref|YP_004245282.1| - 6.1e-06 26.1 1.2 1.5e-05 24.9 0.8 1.7 1 1 0 1 1 1 1 Shikimate kinase CoaE PF01121.15 gi|325969090|ref|YP_004245282.1| - 8e-05 22.1 1.2 0.05 13.0 0.0 2.2 1 1 1 2 2 2 2 Dephospho-CoA kinase AAA_28 PF13521.1 gi|325969090|ref|YP_004245282.1| - 8.3e-05 22.5 0.2 0.00047 20.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|325969090|ref|YP_004245282.1| - 9.8e-05 21.8 3.8 0.00016 21.1 2.6 1.3 1 0 0 1 1 1 1 Cytidylate kinase AAA_33 PF13671.1 gi|325969090|ref|YP_004245282.1| - 0.0003 20.6 0.1 0.00052 19.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|325969090|ref|YP_004245282.1| - 0.0005 19.8 0.2 0.0019 17.9 0.1 1.9 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|325969090|ref|YP_004245282.1| - 0.0015 18.7 0.0 0.0027 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|325969090|ref|YP_004245282.1| - 0.0039 17.0 0.0 0.008 16.0 0.0 1.6 1 1 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.7 gi|325969090|ref|YP_004245282.1| - 0.0066 15.5 0.1 0.014 14.4 0.0 1.8 1 1 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|325969090|ref|YP_004245282.1| - 0.007 16.3 0.2 0.0092 15.9 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|325969090|ref|YP_004245282.1| - 0.0086 16.2 0.0 0.015 15.4 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|325969090|ref|YP_004245282.1| - 0.0087 15.2 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 APS_kinase PF01583.15 gi|325969090|ref|YP_004245282.1| - 0.03 13.9 0.2 0.084 12.5 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase UPF0079 PF02367.12 gi|325969090|ref|YP_004245282.1| - 0.037 13.6 0.0 0.066 12.8 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|325969090|ref|YP_004245282.1| - 0.041 12.7 0.0 0.054 12.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|325969090|ref|YP_004245282.1| - 0.067 12.0 0.3 0.49 9.2 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|325969090|ref|YP_004245282.1| - 0.069 13.0 0.1 0.14 12.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain TMEM206 PF15122.1 gi|325969092|ref|YP_004245284.1| - 0.023 13.6 1.4 0.023 13.5 0.9 1.2 1 0 0 1 1 1 0 TMEM206 protein family OppC_N PF12911.2 gi|325969092|ref|YP_004245284.1| - 0.47 9.8 2.8 0.34 10.3 0.7 1.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Memo PF01875.12 gi|325969093|ref|YP_004245285.1| - 1.6e-79 266.6 0.0 1.8e-79 266.4 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein Ribosomal_S2 PF00318.15 gi|325969094|ref|YP_004245286.1| - 6e-38 130.1 0.0 6.2e-21 74.5 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.1 gi|325969094|ref|YP_004245286.1| - 0.033 13.5 0.2 0.05 12.9 0.2 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Enolase_C PF00113.17 gi|325969095|ref|YP_004245287.1| - 1.6e-61 207.8 0.0 2.1e-61 207.5 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|325969095|ref|YP_004245287.1| - 1.5e-37 128.4 0.1 2.9e-37 127.5 0.1 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|325969095|ref|YP_004245287.1| - 0.00059 20.3 0.0 0.0015 19.0 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|325969095|ref|YP_004245287.1| - 0.0072 16.2 0.0 0.06 13.3 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like HAD PF12710.2 gi|325969096|ref|YP_004245288.1| - 7.8e-10 39.2 0.1 1e-09 38.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|325969096|ref|YP_004245288.1| - 2.2e-09 37.2 0.1 8.4e-09 35.3 0.1 1.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|325969096|ref|YP_004245288.1| - 2e-05 25.0 0.0 0.00087 19.7 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|325969096|ref|YP_004245288.1| - 0.015 15.5 0.1 0.099 12.8 0.1 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Legionella_OMP PF05150.7 gi|325969096|ref|YP_004245288.1| - 0.1 11.7 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Legionella pneumophila major outer membrane protein precursor HSP20 PF00011.16 gi|325969097|ref|YP_004245289.1| - 0.00061 19.6 0.3 0.013 15.3 0.2 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|325969097|ref|YP_004245289.1| - 0.099 13.2 0.1 0.13 12.8 0.1 1.2 1 0 0 1 1 1 0 CS domain Carb_kinase PF01256.12 gi|325969098|ref|YP_004245290.1| - 3.1e-50 170.7 1.4 4.4e-50 170.2 1.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|325969098|ref|YP_004245290.1| - 2.6e-44 150.8 0.0 5e-44 149.8 0.0 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|325969098|ref|YP_004245290.1| - 5.6e-07 28.9 1.1 1.2e-06 27.9 0.7 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|325969098|ref|YP_004245290.1| - 0.0023 17.1 0.1 0.0042 16.3 0.0 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase YwiC PF14256.1 gi|325969100|ref|YP_004245292.1| - 0.71 9.9 16.3 0.06 13.4 3.9 2.8 1 1 1 2 2 2 0 YwiC-like protein Mer2 PF09074.5 gi|325969101|ref|YP_004245293.1| - 0.035 14.0 0.4 0.059 13.2 0.3 1.4 1 0 0 1 1 1 0 Mer2 UBA_e1_C PF09358.5 gi|325969101|ref|YP_004245293.1| - 0.065 13.4 1.5 0.14 12.2 0.5 1.9 1 1 1 2 2 2 0 Ubiquitin-activating enzyme e1 C-terminal domain DUF2570 PF10828.3 gi|325969101|ref|YP_004245293.1| - 0.19 11.3 9.0 0.37 10.4 1.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2570) PEPCK PF00821.13 gi|325969102|ref|YP_004245294.1| - 1.7e-200 667.1 0.0 1.9e-200 666.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase DEAD PF00270.24 gi|325969103|ref|YP_004245295.1| - 7.7e-42 142.6 0.0 1.4e-40 138.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|325969103|ref|YP_004245295.1| - 5.9e-23 80.5 0.0 6.7e-22 77.1 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|325969103|ref|YP_004245295.1| - 0.00019 21.2 0.0 0.00047 20.0 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|325969103|ref|YP_004245295.1| - 0.059 12.6 0.1 0.36 10.0 0.0 2.1 1 1 0 1 1 1 0 SecA DEAD-like domain Flavi_DEAD PF07652.9 gi|325969103|ref|YP_004245295.1| - 0.064 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Flavivirus DEAD domain CobA_CobO_BtuR PF02572.10 gi|325969103|ref|YP_004245295.1| - 0.13 11.8 0.0 0.45 10.1 0.0 1.8 2 0 0 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP OrfB_Zn_ribbon PF07282.6 gi|325969104|ref|YP_004245296.1| - 8.9e-11 41.2 0.0 2e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|325969104|ref|YP_004245296.1| - 0.0035 17.1 0.6 0.0059 16.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|325969104|ref|YP_004245296.1| - 0.025 14.0 1.3 0.043 13.3 0.9 1.3 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain B12-binding_2 PF02607.12 gi|325969104|ref|YP_004245296.1| - 0.029 14.3 0.4 0.1 12.6 0.1 2.0 2 0 0 2 2 2 0 B12 binding domain zinc_ribbon_2 PF13240.1 gi|325969104|ref|YP_004245296.1| - 0.041 13.3 3.4 0.2 11.1 2.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|325969104|ref|YP_004245296.1| - 0.045 12.9 1.5 2.4 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|325969104|ref|YP_004245296.1| - 0.046 13.4 0.4 0.073 12.8 0.3 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.8 gi|325969104|ref|YP_004245296.1| - 0.096 12.1 0.7 0.2 11.1 0.5 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DNA_ligase_ZBD PF03119.11 gi|325969104|ref|YP_004245296.1| - 0.11 12.2 3.2 0.35 10.6 0.1 2.3 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|325969104|ref|YP_004245296.1| - 0.2 11.3 2.2 0.36 10.5 1.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|325969104|ref|YP_004245296.1| - 0.37 10.6 1.4 1.3 8.9 1.0 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain YhfH PF14149.1 gi|325969104|ref|YP_004245296.1| - 0.48 10.2 3.1 3 7.7 1.8 2.2 1 1 1 2 2 2 0 YhfH-like protein zf-IS66 PF13005.2 gi|325969104|ref|YP_004245296.1| - 1.3 9.0 3.8 1.5 8.8 0.1 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|325969104|ref|YP_004245296.1| - 1.4 8.9 3.3 22 5.1 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DUF3797 PF12677.2 gi|325969104|ref|YP_004245296.1| - 2.5 7.7 4.8 16 5.1 0.2 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-TFIIB PF13453.1 gi|325969104|ref|YP_004245296.1| - 3.2 7.0 4.4 19 4.5 3.1 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.6 gi|325969105|ref|YP_004245297.1| - 2.6e-19 68.6 0.0 3.6e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain CpXC PF14353.1 gi|325969105|ref|YP_004245297.1| - 0.029 14.3 0.2 0.5 10.3 0.0 2.1 2 0 0 2 2 2 0 CpXC protein DZR PF12773.2 gi|325969105|ref|YP_004245297.1| - 0.061 13.1 0.4 0.097 12.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|325969105|ref|YP_004245297.1| - 0.071 12.8 5.0 2.4 7.9 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|325969105|ref|YP_004245297.1| - 0.081 12.4 0.4 0.16 11.5 0.3 1.6 1 1 0 1 1 1 0 Cysteine-rich CPCC zinc_ribbon_5 PF13719.1 gi|325969105|ref|YP_004245297.1| - 0.12 11.9 5.0 3.6 7.2 0.6 2.4 1 1 1 2 2 2 0 zinc-ribbon domain Glycos_transf_1 PF00534.15 gi|325969105|ref|YP_004245297.1| - 0.13 11.6 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 zf-ribbon_3 PF13248.1 gi|325969105|ref|YP_004245297.1| - 0.17 11.1 3.7 1 8.6 0.1 2.1 1 1 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|325969105|ref|YP_004245297.1| - 0.31 11.1 5.6 0.36 10.9 0.4 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|325969105|ref|YP_004245297.1| - 7.1 6.2 7.1 1.7e+02 1.7 4.9 2.3 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger NTP_transf_2 PF01909.18 gi|325969106|ref|YP_004245298.1| - 6e-10 39.3 0.0 6.8e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|325969106|ref|YP_004245298.1| - 0.0069 16.0 0.0 0.0089 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 MFS_1 PF07690.11 gi|325969109|ref|YP_004245301.1| - 8.1e-29 100.4 70.0 1.4e-18 66.7 20.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|325969109|ref|YP_004245301.1| - 4.2e-07 28.7 13.4 4.2e-07 28.7 9.3 2.7 3 1 0 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|325969109|ref|YP_004245301.1| - 8.2e-06 24.6 17.3 8.2e-06 24.6 12.0 2.8 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.2 gi|325969109|ref|YP_004245301.1| - 0.016 15.0 0.1 0.016 15.0 0.1 4.1 4 1 1 5 5 5 0 MFS_1 like family ThiF PF00899.16 gi|325969110|ref|YP_004245302.1| - 7e-45 152.1 0.3 1e-44 151.6 0.2 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|325969110|ref|YP_004245302.1| - 4.4e-19 67.8 0.2 7.9e-19 67.0 0.1 1.4 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|325969110|ref|YP_004245302.1| - 0.0024 17.9 0.1 0.0046 17.0 0.0 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase HCV_core PF01542.13 gi|325969110|ref|YP_004245302.1| - 0.093 13.1 1.9 0.2 12.0 0.2 2.4 2 1 0 2 2 2 0 Hepatitis C virus core protein DHHA1 PF02272.14 gi|325969111|ref|YP_004245303.1| - 0.0034 17.0 0.0 0.0082 15.8 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|325969111|ref|YP_004245303.1| - 0.037 13.6 0.0 2.6 7.7 0.0 2.2 2 0 0 2 2 2 0 DHH family UPRTase PF14681.1 gi|325969112|ref|YP_004245304.1| - 5.3e-54 182.5 0.2 6.5e-54 182.2 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|325969112|ref|YP_004245304.1| - 9.6e-06 25.3 1.3 1.8e-05 24.4 0.9 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain NAD_binding_7 PF13241.1 gi|325969113|ref|YP_004245305.1| - 1.4e-24 86.2 0.1 2.8e-24 85.3 0.0 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|325969113|ref|YP_004245305.1| - 3.5e-08 33.4 0.1 7e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_10 PF13460.1 gi|325969113|ref|YP_004245305.1| - 4.4e-05 23.5 0.1 5.3e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|325969113|ref|YP_004245305.1| - 0.0003 20.1 0.0 0.00045 19.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family 3Beta_HSD PF01073.14 gi|325969113|ref|YP_004245305.1| - 0.00034 19.4 0.0 0.00045 19.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family FAD_binding_2 PF00890.19 gi|325969113|ref|YP_004245305.1| - 0.004 16.0 0.1 0.0053 15.6 0.1 1.3 1 1 0 1 1 1 1 FAD binding domain PrkA PF06798.7 gi|325969113|ref|YP_004245305.1| - 0.0069 15.6 0.8 0.011 15.0 0.1 1.6 2 1 0 2 2 2 1 PrkA serine protein kinase C-terminal domain Rossmann-like PF10727.4 gi|325969113|ref|YP_004245305.1| - 0.085 12.5 0.1 0.21 11.3 0.0 1.7 1 1 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|325969113|ref|YP_004245305.1| - 0.087 12.4 0.4 0.22 11.1 0.3 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|325969113|ref|YP_004245305.1| - 0.48 10.8 2.6 0.97 9.8 0.9 2.2 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Ribosomal_L18p PF00861.17 gi|325969114|ref|YP_004245306.1| - 0.096 12.8 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal L18p/L5e family ECH PF00378.15 gi|325969115|ref|YP_004245307.1| - 1.2e-23 83.4 0.0 1.5e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Chordopox_E11 PF06138.7 gi|325969115|ref|YP_004245307.1| - 0.012 15.6 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Chordopoxvirus E11 protein Transp_cyt_pur PF02133.10 gi|325969116|ref|YP_004245308.1| - 3.3e-61 207.1 48.5 4.2e-61 206.8 33.6 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AA_kinase PF00696.23 gi|325969117|ref|YP_004245309.1| - 1.6e-28 99.9 0.0 2.1e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Gar1 PF04410.9 gi|325969118|ref|YP_004245310.1| - 1.3e-05 24.6 0.0 1.5e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TF_Zn_Ribbon PF08271.7 gi|325969119|ref|YP_004245311.1| - 1.9e-19 68.7 0.4 3.4e-19 67.8 0.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.14 gi|325969119|ref|YP_004245311.1| - 5.2e-15 55.0 0.4 1e-08 34.8 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat zf-ribbon_3 PF13248.1 gi|325969119|ref|YP_004245311.1| - 8.5e-05 21.6 0.3 0.00014 20.9 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|325969119|ref|YP_004245311.1| - 0.00059 19.3 0.3 0.0012 18.3 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|325969119|ref|YP_004245311.1| - 0.013 14.9 0.2 0.037 13.4 0.1 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|325969119|ref|YP_004245311.1| - 0.023 14.3 0.3 0.048 13.3 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|325969119|ref|YP_004245311.1| - 0.03 14.1 1.1 0.1 12.4 0.7 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Cyclin_N PF00134.18 gi|325969119|ref|YP_004245311.1| - 0.042 13.4 0.4 2.5 7.6 0.0 2.2 1 1 1 2 2 2 0 Cyclin, N-terminal domain DZR PF12773.2 gi|325969119|ref|YP_004245311.1| - 0.05 13.4 0.6 0.13 12.0 0.4 1.6 1 1 0 1 1 1 0 Double zinc ribbon Trm112p PF03966.11 gi|325969119|ref|YP_004245311.1| - 0.1 13.0 2.1 10 6.5 0.1 2.8 2 1 1 3 3 3 0 Trm112p-like protein APC2 PF08672.6 gi|325969119|ref|YP_004245311.1| - 0.11 12.7 0.1 0.34 11.1 0.0 1.8 2 0 0 2 2 1 0 Anaphase promoting complex (APC) subunit 2 Prim_Zn_Ribbon PF08273.7 gi|325969119|ref|YP_004245311.1| - 0.11 12.6 1.8 0.27 11.3 1.3 1.6 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.3 gi|325969119|ref|YP_004245311.1| - 0.11 12.4 0.7 2.3 8.2 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ADK_lid PF05191.9 gi|325969119|ref|YP_004245311.1| - 0.11 12.1 0.4 0.28 10.8 0.3 1.7 1 0 0 1 1 1 0 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|325969119|ref|YP_004245311.1| - 0.14 11.7 1.1 3.9 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|325969119|ref|YP_004245311.1| - 0.16 11.6 0.9 12 5.6 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_pol_Rpc34 PF05158.7 gi|325969120|ref|YP_004245312.1| - 3e-09 36.5 0.9 5.2e-06 25.8 0.4 2.1 1 1 0 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.17 gi|325969120|ref|YP_004245312.1| - 6.2e-05 22.6 0.0 0.0001 21.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|325969120|ref|YP_004245312.1| - 0.016 14.8 0.0 0.036 13.7 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|325969120|ref|YP_004245312.1| - 0.021 15.1 0.0 0.062 13.6 0.0 1.9 1 1 1 2 2 2 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|325969120|ref|YP_004245312.1| - 0.027 14.3 0.0 0.057 13.2 0.0 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC LigT_PEase PF02834.11 gi|325969121|ref|YP_004245313.1| - 1.3e-29 101.9 0.0 7.2e-20 70.7 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|325969121|ref|YP_004245313.1| - 1.2e-12 47.7 0.0 1.4e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|325969121|ref|YP_004245313.1| - 2.2e-11 43.8 0.0 2.9e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain NPCBM_assoc PF10633.4 gi|325969124|ref|YP_004245316.1| - 2e-13 50.1 5.0 0.00038 20.4 0.0 6.3 6 1 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|325969124|ref|YP_004245316.1| - 1.1e-08 35.0 8.2 0.00077 19.4 0.0 4.8 5 1 0 5 5 5 2 CARDB CcmH PF03918.9 gi|325969124|ref|YP_004245316.1| - 0.19 10.7 0.0 0.32 9.9 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein TRAP_beta PF05753.9 gi|325969124|ref|YP_004245316.1| - 0.39 9.8 6.5 12 5.0 0.0 4.6 5 1 0 5 5 5 0 Translocon-associated protein beta (TRAPB) NS3_envE PF02723.9 gi|325969124|ref|YP_004245316.1| - 1.5 8.7 9.3 0.52 10.2 3.1 2.4 2 0 0 2 2 2 0 Non-structural protein NS3/Small envelope protein E MFS_1 PF07690.11 gi|325969125|ref|YP_004245317.1| - 4.7e-47 160.4 43.7 4.7e-47 160.4 30.3 2.2 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325969125|ref|YP_004245317.1| - 2.5e-14 52.7 9.4 2.5e-14 52.7 6.5 3.8 3 1 1 4 4 4 1 Sugar (and other) transporter MFS_2 PF13347.1 gi|325969125|ref|YP_004245317.1| - 0.0009 17.7 6.1 0.0009 17.7 4.2 4.0 2 1 2 4 4 4 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|325969125|ref|YP_004245317.1| - 0.0078 14.3 29.0 0.0049 15.0 10.5 2.8 3 1 0 3 3 3 2 Transmembrane secretion effector DUF2243 PF10002.4 gi|325969125|ref|YP_004245317.1| - 0.1 12.4 2.8 0.086 12.6 0.4 2.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2243) DUF3084 PF11283.3 gi|325969125|ref|YP_004245317.1| - 0.15 11.9 9.7 1.3 8.9 1.1 3.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) AIRS PF00586.19 gi|325969126|ref|YP_004245318.1| - 2.8e-11 43.4 0.0 6.7e-11 42.2 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DUF92 PF01940.11 gi|325969128|ref|YP_004245320.1| - 1.1e-52 178.4 4.5 1.5e-52 178.0 3.1 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 zf-HIT PF04438.11 gi|325969128|ref|YP_004245320.1| - 0.013 15.0 0.2 0.022 14.3 0.1 1.3 1 0 0 1 1 1 0 HIT zinc finger Elf1 PF05129.8 gi|325969129|ref|YP_004245321.1| - 8.9e-20 70.1 0.0 1.2e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|325969129|ref|YP_004245321.1| - 0.00057 20.1 0.2 0.00099 19.3 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|325969129|ref|YP_004245321.1| - 0.007 16.1 0.3 0.011 15.4 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|325969129|ref|YP_004245321.1| - 0.022 14.0 1.4 0.056 12.7 1.0 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|325969129|ref|YP_004245321.1| - 0.04 13.3 5.4 0.63 9.5 3.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|325969129|ref|YP_004245321.1| - 0.043 13.0 7.7 0.19 10.9 5.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.18 gi|325969129|ref|YP_004245321.1| - 0.043 13.9 1.5 0.66 10.1 0.2 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family DUF164 PF02591.10 gi|325969129|ref|YP_004245321.1| - 0.064 13.0 0.2 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-CSL PF05207.8 gi|325969129|ref|YP_004245321.1| - 0.072 12.6 0.1 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 CSL zinc finger zf-CHCC PF10276.4 gi|325969129|ref|YP_004245321.1| - 0.096 12.5 0.7 0.18 11.6 0.5 1.4 1 0 0 1 1 1 0 Zinc-finger domain zf-ISL3 PF14690.1 gi|325969129|ref|YP_004245321.1| - 0.11 12.5 1.3 0.61 10.1 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|325969129|ref|YP_004245321.1| - 0.16 11.6 0.6 0.35 10.5 0.4 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Cys_rich_CPXG PF14255.1 gi|325969129|ref|YP_004245321.1| - 0.19 11.5 0.7 0.52 10.1 0.5 1.8 1 1 0 1 1 1 0 Cysteine-rich CPXCG Zn_ribbon_recom PF13408.1 gi|325969129|ref|YP_004245321.1| - 0.34 11.2 2.3 3 8.1 1.6 2.2 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Auto_anti-p27 PF06677.7 gi|325969129|ref|YP_004245321.1| - 0.39 10.5 2.8 0.83 9.4 1.8 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.15 gi|325969129|ref|YP_004245321.1| - 0.4 10.5 0.1 0.4 10.5 0.1 2.4 3 0 0 3 3 3 0 Rubredoxin zf-IS66 PF13005.2 gi|325969129|ref|YP_004245321.1| - 0.54 10.2 2.1 1.2 9.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_5 PF13719.1 gi|325969129|ref|YP_004245321.1| - 0.98 9.0 4.1 5.9 6.5 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|325969129|ref|YP_004245321.1| - 1.3 9.4 3.6 1.5 9.2 0.7 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_4 PF13717.1 gi|325969129|ref|YP_004245321.1| - 2.2 8.0 4.4 25 4.6 3.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PcrB PF01884.12 gi|325969130|ref|YP_004245322.1| - 1.1e-67 227.7 0.0 1.2e-67 227.5 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|325969130|ref|YP_004245322.1| - 3e-11 43.0 0.0 6.5e-11 41.9 0.0 1.5 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|325969130|ref|YP_004245322.1| - 1.1e-05 24.0 0.0 2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Dus PF01207.12 gi|325969130|ref|YP_004245322.1| - 9.7e-05 21.3 0.0 0.00027 19.8 0.0 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|325969130|ref|YP_004245322.1| - 0.00054 19.1 0.1 0.048 12.7 0.0 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|325969130|ref|YP_004245322.1| - 0.0039 16.1 0.0 0.0095 14.8 0.0 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain NanE PF04131.9 gi|325969130|ref|YP_004245322.1| - 0.016 14.1 0.0 0.13 11.1 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|325969130|ref|YP_004245322.1| - 0.017 14.0 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|325969130|ref|YP_004245322.1| - 0.055 12.5 0.0 0.12 11.5 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|325969130|ref|YP_004245322.1| - 0.065 12.3 0.8 0.17 11.0 0.3 1.7 2 0 0 2 2 2 0 Nitronate monooxygenase Sec61_beta PF03911.11 gi|325969131|ref|YP_004245323.1| - 1.6e-07 30.9 2.4 1.9e-07 30.7 1.7 1.1 1 0 0 1 1 1 1 Sec61beta family zf-ZPR1 PF03367.8 gi|325969132|ref|YP_004245324.1| - 1.6e-32 111.8 0.0 1.9e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|325969132|ref|YP_004245324.1| - 0.0076 16.5 0.1 0.015 15.5 0.1 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar Rad50_zn_hook PF04423.9 gi|325969132|ref|YP_004245324.1| - 0.17 11.3 0.3 0.39 10.2 0.2 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-ribbon_3 PF13248.1 gi|325969132|ref|YP_004245324.1| - 0.59 9.4 3.2 3.6 6.9 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|325969132|ref|YP_004245324.1| - 6 6.6 5.2 5.4 6.8 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HIT PF01230.18 gi|325969134|ref|YP_004245326.1| - 3.4e-29 101.2 0.5 4.5e-29 100.8 0.4 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|325969134|ref|YP_004245326.1| - 2e-16 60.2 0.1 2.5e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|325969134|ref|YP_004245326.1| - 0.011 15.3 1.4 0.02 14.5 0.9 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 ABC2_membrane_4 PF12730.2 gi|325969135|ref|YP_004245327.1| - 0.057 12.5 14.8 0.064 12.4 10.3 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein PrgI PF12666.2 gi|325969135|ref|YP_004245327.1| - 0.084 13.0 11.5 0.027 14.6 5.8 1.7 1 1 1 2 2 2 0 PrgI family protein OCIA PF07051.6 gi|325969135|ref|YP_004245327.1| - 0.52 9.7 2.9 0.59 9.5 0.2 2.1 1 1 1 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) TraL PF07178.6 gi|325969135|ref|YP_004245327.1| - 1.3 9.1 6.0 7.8 6.6 0.3 2.3 1 1 1 2 2 2 0 TraL protein DUF883 PF05957.8 gi|325969135|ref|YP_004245327.1| - 1.6 9.2 3.4 2.1 8.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Oxidored_q2 PF00420.19 gi|325969135|ref|YP_004245327.1| - 2.2 7.9 12.1 3.6 7.2 8.4 1.4 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1700 PF08006.6 gi|325969135|ref|YP_004245327.1| - 8.5 5.6 13.1 10 5.3 9.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) TINF2_N PF14973.1 gi|325969136|ref|YP_004245328.1| - 0.037 14.1 0.0 0.07 13.2 0.0 1.4 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus MoeA_N PF03453.12 gi|325969137|ref|YP_004245329.1| - 1.1e-42 145.1 0.1 8.7e-42 142.2 0.0 2.2 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|325969137|ref|YP_004245329.1| - 5.5e-26 90.7 0.2 1e-25 89.8 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|325969137|ref|YP_004245329.1| - 0.00024 21.0 0.0 0.00058 19.7 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) S4_2 PF13275.1 gi|325969137|ref|YP_004245329.1| - 0.08 12.5 0.0 0.33 10.5 0.0 2.0 1 0 0 1 1 1 0 S4 domain DUF4417 PF14386.1 gi|325969139|ref|YP_004245331.1| - 0.005 16.2 0.0 0.0086 15.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4417) zf-ZPR1 PF03367.8 gi|325969140|ref|YP_004245332.1| - 0.088 11.9 1.2 0.98 8.5 0.2 2.5 2 0 0 2 2 2 0 ZPR1 zinc-finger domain DUF4355 PF14265.1 gi|325969140|ref|YP_004245332.1| - 2.5 8.0 4.8 0.6 10.0 0.7 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4355) Cren7 PF11520.3 gi|325969141|ref|YP_004245333.1| - 6.6e-17 60.8 1.7 7.4e-17 60.7 1.2 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 Sugar_tr PF00083.19 gi|325969142|ref|YP_004245334.1| - 4.1e-11 42.1 3.2 4.6e-11 41.9 2.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325969142|ref|YP_004245334.1| - 3.2e-07 29.3 9.6 3.7e-07 29.1 6.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|325969142|ref|YP_004245334.1| - 0.018 14.8 1.2 0.021 14.5 0.0 1.7 2 0 0 2 2 2 0 MFS_1 like family MFS_2 PF13347.1 gi|325969142|ref|YP_004245334.1| - 0.02 13.2 2.5 0.023 13.1 1.7 1.0 1 0 0 1 1 1 0 MFS/sugar transport protein POR PF01558.13 gi|325969145|ref|YP_004245337.1| - 1.6e-33 116.0 0.3 1.9e-33 115.8 0.2 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase IstB_IS21 PF01695.12 gi|325969145|ref|YP_004245337.1| - 0.048 13.0 0.2 0.081 12.3 0.2 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein TPP_enzyme_C PF02775.16 gi|325969146|ref|YP_004245338.1| - 2.7e-22 78.9 0.6 8.4e-22 77.3 0.4 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|325969146|ref|YP_004245338.1| - 5.8e-15 55.4 0.0 1.2e-14 54.3 0.0 1.6 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|325969146|ref|YP_004245338.1| - 4.4e-11 41.8 12.3 1e-07 31.2 3.1 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|325969146|ref|YP_004245338.1| - 8.9e-08 31.6 13.5 8e-05 22.3 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Transketolase_C PF02780.15 gi|325969146|ref|YP_004245338.1| - 1.2e-06 28.4 0.4 3.9e-06 26.8 0.1 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_21 PF14697.1 gi|325969146|ref|YP_004245338.1| - 1.1e-05 25.2 8.7 2.5e-05 24.0 6.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain TPP_enzyme_N PF02776.13 gi|325969146|ref|YP_004245338.1| - 2.2e-05 23.9 0.3 0.19 11.1 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|325969146|ref|YP_004245338.1| - 2.8e-05 24.4 12.9 9.7e-05 22.6 8.6 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325969146|ref|YP_004245338.1| - 4.6e-05 23.0 4.4 4.6e-05 23.0 3.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325969146|ref|YP_004245338.1| - 0.0003 20.5 12.7 0.0015 18.2 1.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325969146|ref|YP_004245338.1| - 0.0017 18.5 11.5 0.0055 16.9 8.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325969146|ref|YP_004245338.1| - 0.0019 18.7 5.7 0.097 13.2 0.6 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|325969146|ref|YP_004245338.1| - 0.0019 18.8 5.3 0.0062 17.2 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|325969146|ref|YP_004245338.1| - 0.016 15.5 6.6 0.07 13.4 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain SAM_adeno_trans PF01887.11 gi|325969146|ref|YP_004245338.1| - 0.031 13.3 0.0 0.052 12.6 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-l-methionine hydroxide adenosyltransferase Fer4_11 PF13247.1 gi|325969146|ref|YP_004245338.1| - 0.066 13.1 4.4 0.14 12.0 3.0 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325969146|ref|YP_004245338.1| - 0.36 11.2 15.0 0.068 13.5 3.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|325969146|ref|YP_004245338.1| - 0.58 10.2 12.3 1.5 8.9 2.9 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325969146|ref|YP_004245338.1| - 7.7 7.0 13.9 97 3.4 9.7 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|325969146|ref|YP_004245338.1| - 9.9 6.6 13.6 15 6.0 2.5 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CarboxypepD_reg PF13620.1 gi|325969147|ref|YP_004245339.1| - 1.2e-08 34.8 11.1 0.0011 18.9 1.0 5.3 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain Cna_B PF05738.8 gi|325969147|ref|YP_004245339.1| - 0.032 13.9 1.4 0.66 9.7 0.3 3.1 2 0 0 2 2 2 0 Cna protein B-type domain V-set PF07686.12 gi|325969147|ref|YP_004245339.1| - 0.074 12.9 0.0 4.9 7.0 0.0 2.7 2 1 0 2 2 2 0 Immunoglobulin V-set domain DUF1886 PF09171.5 gi|325969148|ref|YP_004245340.1| - 0.022 13.8 0.3 0.031 13.2 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1886) DUF1638 PF07796.6 gi|325969148|ref|YP_004245340.1| - 0.054 13.1 0.1 0.07 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1638) PMC2NT PF08066.7 gi|325969148|ref|YP_004245340.1| - 0.11 12.8 0.1 0.22 11.8 0.1 1.6 1 0 0 1 1 1 0 PMC2NT (NUC016) domain RHH_1 PF01402.16 gi|325969150|ref|YP_004245342.1| - 9.6e-06 25.2 0.4 0.00011 21.8 0.0 2.8 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|325969150|ref|YP_004245342.1| - 0.085 12.6 0.1 0.18 11.6 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) RHH_3 PF12651.2 gi|325969150|ref|YP_004245342.1| - 0.089 12.5 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix domain GFO_IDH_MocA PF01408.17 gi|325969151|ref|YP_004245343.1| - 2.3e-15 57.1 0.0 4.1e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|325969151|ref|YP_004245343.1| - 0.00055 19.9 0.3 0.021 14.7 0.1 2.3 2 0 0 2 2 2 1 TrkA-N domain Semialdhyde_dh PF01118.19 gi|325969151|ref|YP_004245343.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|325969151|ref|YP_004245343.1| - 0.012 15.1 0.0 0.067 12.7 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding dehydrogenase GFO_IDH_MocA_C PF02894.12 gi|325969151|ref|YP_004245343.1| - 0.015 15.1 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.14 gi|325969151|ref|YP_004245343.1| - 0.023 15.1 0.0 0.054 14.0 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain Antitoxin-MazE PF04014.13 gi|325969153|ref|YP_004245345.1| - 0.00026 20.6 0.8 0.0082 15.8 0.1 2.5 3 0 0 3 3 3 2 Antidote-toxin recognition MazE Saccharop_dh PF03435.13 gi|325969155|ref|YP_004245347.1| - 6.8e-41 140.5 0.0 7.8e-41 140.3 0.0 1.0 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|325969155|ref|YP_004245347.1| - 3.3e-07 30.3 0.2 1.8e-06 27.8 0.1 2.2 2 0 0 2 2 2 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|325969155|ref|YP_004245347.1| - 4.1e-07 29.9 0.1 8.3e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|325969155|ref|YP_004245347.1| - 4.6e-06 26.9 0.2 1.1e-05 25.7 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|325969155|ref|YP_004245347.1| - 2.8e-05 23.8 0.3 7.9e-05 22.3 0.2 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|325969155|ref|YP_004245347.1| - 5.8e-05 22.8 0.1 0.00015 21.5 0.0 1.8 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|325969155|ref|YP_004245347.1| - 0.00013 22.2 0.0 0.00022 21.5 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|325969155|ref|YP_004245347.1| - 0.0041 17.0 0.2 0.0083 16.0 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|325969155|ref|YP_004245347.1| - 0.0065 15.9 0.1 0.013 14.9 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_8 PF13450.1 gi|325969155|ref|YP_004245347.1| - 0.0095 15.9 0.2 5.9 6.9 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|325969155|ref|YP_004245347.1| - 0.038 13.1 0.1 0.073 12.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PDH PF02153.12 gi|325969155|ref|YP_004245347.1| - 0.041 12.7 0.5 0.1 11.4 0.1 1.8 2 0 0 2 2 2 0 Prephenate dehydrogenase Shikimate_DH PF01488.15 gi|325969155|ref|YP_004245347.1| - 0.071 13.2 0.2 0.25 11.4 0.1 1.9 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.4 gi|325969155|ref|YP_004245347.1| - 0.076 12.7 0.2 0.19 11.4 0.2 1.6 1 0 0 1 1 1 0 Rossmann-like domain IlvN PF07991.7 gi|325969155|ref|YP_004245347.1| - 0.12 11.7 0.2 0.28 10.5 0.2 1.6 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ABC_tran PF00005.22 gi|325969156|ref|YP_004245348.1| - 9.3e-38 129.6 0.0 7.8e-18 65.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|325969156|ref|YP_004245348.1| - 3.4e-13 50.2 4.0 2.3e-07 31.0 0.3 4.2 3 1 0 3 3 3 2 AAA domain RLI PF04068.10 gi|325969156|ref|YP_004245348.1| - 9e-13 47.5 3.9 9e-13 47.5 2.7 2.0 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|325969156|ref|YP_004245348.1| - 8.1e-10 39.5 0.4 0.00035 21.3 0.0 3.2 2 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325969156|ref|YP_004245348.1| - 4.3e-09 35.9 5.1 0.0004 19.6 0.3 3.4 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|325969156|ref|YP_004245348.1| - 1.1e-06 27.9 3.2 1.1e-06 27.9 2.2 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_16 PF13191.1 gi|325969156|ref|YP_004245348.1| - 8.9e-06 25.8 0.1 0.0018 18.3 0.0 2.8 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|325969156|ref|YP_004245348.1| - 1.1e-05 25.6 0.0 0.057 13.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.1 gi|325969156|ref|YP_004245348.1| - 2.9e-05 23.8 7.9 4.9e-05 23.0 5.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_18 PF13238.1 gi|325969156|ref|YP_004245348.1| - 9.9e-05 22.6 0.2 0.69 10.2 0.0 2.9 2 2 0 2 2 2 2 AAA domain MobB PF03205.9 gi|325969156|ref|YP_004245348.1| - 0.00019 21.1 0.3 0.17 11.6 0.0 3.1 2 1 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B Fer4_6 PF12837.2 gi|325969156|ref|YP_004245348.1| - 0.00049 19.8 12.7 0.005 16.6 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain RuvB_N PF05496.7 gi|325969156|ref|YP_004245348.1| - 0.00053 19.0 0.1 0.89 8.5 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|325969156|ref|YP_004245348.1| - 0.00055 19.8 0.0 0.59 10.0 0.0 3.0 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|325969156|ref|YP_004245348.1| - 0.00099 18.2 0.2 0.68 8.9 0.0 3.3 4 0 0 4 4 3 1 AAA ATPase domain RNA_helicase PF00910.17 gi|325969156|ref|YP_004245348.1| - 0.001 19.2 0.0 0.36 11.0 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_25 PF13481.1 gi|325969156|ref|YP_004245348.1| - 0.0011 18.3 0.2 0.09 12.1 0.0 2.8 3 0 0 3 3 2 1 AAA domain RecA PF00154.16 gi|325969156|ref|YP_004245348.1| - 0.0014 17.7 0.0 0.067 12.2 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein NACHT PF05729.7 gi|325969156|ref|YP_004245348.1| - 0.0016 18.1 0.0 0.095 12.3 0.0 2.4 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|325969156|ref|YP_004245348.1| - 0.0017 18.5 0.0 0.18 11.9 0.0 2.8 2 0 0 2 2 2 1 AAA domain Lactococcin PF04369.8 gi|325969156|ref|YP_004245348.1| - 0.002 18.0 0.1 0.82 9.6 0.0 2.5 2 0 0 2 2 2 1 Lactococcin-like family AAA_14 PF13173.1 gi|325969156|ref|YP_004245348.1| - 0.0032 17.3 0.3 3.2 7.6 0.0 3.1 3 0 0 3 3 2 1 AAA domain AAA_23 PF13476.1 gi|325969156|ref|YP_004245348.1| - 0.0034 17.7 0.1 1.2 9.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|325969156|ref|YP_004245348.1| - 0.0077 16.0 0.0 0.16 11.7 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 UPF0079 PF02367.12 gi|325969156|ref|YP_004245348.1| - 0.0084 15.7 0.8 0.29 10.7 0.0 2.8 3 1 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 Fer4_10 PF13237.1 gi|325969156|ref|YP_004245348.1| - 0.013 15.2 10.4 0.031 14.0 7.1 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_10 PF12846.2 gi|325969156|ref|YP_004245348.1| - 0.013 14.9 0.0 0.092 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain ATP-synt_ab PF00006.20 gi|325969156|ref|YP_004245348.1| - 0.014 14.8 0.1 6.5 6.1 0.0 3.1 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.1 gi|325969156|ref|YP_004245348.1| - 0.017 15.0 0.4 2.2 8.2 0.0 3.3 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Fer4_7 PF12838.2 gi|325969156|ref|YP_004245348.1| - 0.019 15.3 2.7 0.019 15.3 1.9 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325969156|ref|YP_004245348.1| - 0.029 15.0 0.3 0.029 15.0 0.2 2.1 2 0 0 2 2 1 0 4Fe-4S double cluster binding domain Arch_ATPase PF01637.13 gi|325969156|ref|YP_004245348.1| - 0.034 13.8 0.0 0.13 11.9 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase NB-ARC PF00931.17 gi|325969156|ref|YP_004245348.1| - 0.048 12.5 0.6 1.8 7.3 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Miro PF08477.8 gi|325969156|ref|YP_004245348.1| - 0.056 13.9 0.1 28 5.2 0.0 2.9 3 0 0 3 3 3 0 Miro-like protein PRK PF00485.13 gi|325969156|ref|YP_004245348.1| - 0.064 12.8 0.1 1.2 8.6 0.0 2.7 3 0 0 3 3 2 0 Phosphoribulokinase / Uridine kinase family AAA_29 PF13555.1 gi|325969156|ref|YP_004245348.1| - 0.074 12.5 0.0 17 5.0 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|325969156|ref|YP_004245348.1| - 0.12 11.9 0.1 1.9 8.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|325969156|ref|YP_004245348.1| - 0.14 11.3 0.0 7.4 5.7 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|325969156|ref|YP_004245348.1| - 0.16 10.3 0.0 8 4.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain Fer4_9 PF13187.1 gi|325969156|ref|YP_004245348.1| - 0.19 12.0 8.2 0.72 10.1 5.7 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325969156|ref|YP_004245348.1| - 0.28 11.6 10.7 0.27 11.6 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|325969156|ref|YP_004245348.1| - 0.44 10.6 7.4 0.91 9.5 5.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325969156|ref|YP_004245348.1| - 1.4 9.0 11.8 0.18 11.8 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|325969156|ref|YP_004245348.1| - 1.4 9.3 7.1 6.6 7.1 4.9 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain GCD14 PF08704.5 gi|325969157|ref|YP_004245349.1| - 6e-36 124.1 0.0 2.1e-35 122.3 0.0 1.7 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|325969157|ref|YP_004245349.1| - 6.8e-11 41.9 0.0 9.1e-11 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325969157|ref|YP_004245349.1| - 1.2e-08 35.5 0.0 1.9e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|325969157|ref|YP_004245349.1| - 1.6e-08 34.3 0.1 2.5e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|325969157|ref|YP_004245349.1| - 4.6e-07 29.8 0.0 2.5e-06 27.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|325969157|ref|YP_004245349.1| - 9.2e-06 25.1 0.0 4.9e-05 22.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|325969157|ref|YP_004245349.1| - 3e-05 24.8 0.0 5.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|325969157|ref|YP_004245349.1| - 0.00023 21.5 0.0 0.00043 20.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.1 gi|325969157|ref|YP_004245349.1| - 0.00044 19.7 0.3 0.0015 18.0 0.2 1.9 3 0 0 3 3 3 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_25 PF13649.1 gi|325969157|ref|YP_004245349.1| - 0.00074 19.8 0.0 0.0012 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|325969157|ref|YP_004245349.1| - 0.0015 18.1 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_3 PF01596.12 gi|325969157|ref|YP_004245349.1| - 0.009 15.0 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_32 PF13679.1 gi|325969157|ref|YP_004245349.1| - 0.034 13.8 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Gcd10p PF04189.8 gi|325969157|ref|YP_004245349.1| - 0.04 13.0 0.0 0.066 12.3 0.0 1.4 1 0 0 1 1 1 0 Gcd10p family Methyltransf_23 PF13489.1 gi|325969157|ref|YP_004245349.1| - 0.067 12.9 0.0 0.3 10.8 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain PsiA PF06952.6 gi|325969157|ref|YP_004245349.1| - 0.086 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 PsiA protein CxxCxxCC PF03692.10 gi|325969158|ref|YP_004245350.1| - 5.1e-10 39.7 0.0 9.7e-10 38.7 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Proteasome PF00227.21 gi|325969159|ref|YP_004245351.1| - 2.9e-59 199.5 0.0 4.5e-59 198.9 0.0 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|325969159|ref|YP_004245351.1| - 4.1e-10 38.7 0.1 4.1e-10 38.7 0.1 2.6 4 0 0 4 4 4 1 Proteasome subunit A N-terminal signature Methyltransf_11 PF08241.7 gi|325969160|ref|YP_004245352.1| - 1.2e-20 73.8 0.0 2.1e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325969160|ref|YP_004245352.1| - 1.9e-18 66.5 0.0 2.6e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|325969160|ref|YP_004245352.1| - 8.9e-15 54.9 0.0 1.3e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325969160|ref|YP_004245352.1| - 2.1e-13 50.2 0.0 4.2e-13 49.3 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|325969160|ref|YP_004245352.1| - 3.8e-13 49.5 0.0 6.9e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325969160|ref|YP_004245352.1| - 4.6e-12 46.5 0.0 7.9e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|325969160|ref|YP_004245352.1| - 1.9e-11 44.1 0.0 3.4e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Nitro_FeMo-Co PF02579.12 gi|325969160|ref|YP_004245352.1| - 3.6e-09 36.5 0.0 9.7e-09 35.1 0.0 1.7 2 0 0 2 2 1 1 Dinitrogenase iron-molybdenum cofactor MTS PF05175.9 gi|325969160|ref|YP_004245352.1| - 7.3e-09 35.2 0.0 1.1e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|325969160|ref|YP_004245352.1| - 2.8e-08 33.1 0.0 3.9e-08 32.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.6 gi|325969160|ref|YP_004245352.1| - 4.8e-07 29.3 0.0 6.8e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) RrnaAD PF00398.15 gi|325969160|ref|YP_004245352.1| - 5.3e-06 25.6 0.0 7.7e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_8 PF05148.10 gi|325969160|ref|YP_004245352.1| - 4.7e-05 23.1 0.0 0.00014 21.6 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.6 gi|325969160|ref|YP_004245352.1| - 0.00025 20.5 0.0 0.0029 17.0 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_2 PF00891.13 gi|325969160|ref|YP_004245352.1| - 0.00041 19.6 0.0 0.00057 19.1 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase PCMT PF01135.14 gi|325969160|ref|YP_004245352.1| - 0.0013 18.3 0.0 0.45 10.0 0.0 2.2 2 0 0 2 2 2 2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|325969160|ref|YP_004245352.1| - 0.0025 17.0 0.0 0.0034 16.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.7 gi|325969160|ref|YP_004245352.1| - 0.0055 16.1 0.0 0.0082 15.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_24 PF13578.1 gi|325969160|ref|YP_004245352.1| - 0.012 16.4 0.0 0.024 15.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|325969160|ref|YP_004245352.1| - 0.012 14.7 0.0 0.017 14.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_32 PF13679.1 gi|325969160|ref|YP_004245352.1| - 0.021 14.5 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|325969160|ref|YP_004245352.1| - 0.032 13.7 0.1 0.046 13.2 0.1 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Peptidase_MA_2 PF13485.1 gi|325969161|ref|YP_004245353.1| - 0.021 14.8 0.0 0.039 14.0 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|325969161|ref|YP_004245353.1| - 0.05 13.2 0.0 0.071 12.7 0.0 1.1 1 0 0 1 1 1 0 SprT-like family DUF45 PF01863.12 gi|325969161|ref|YP_004245353.1| - 0.11 12.3 0.3 0.17 11.6 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF45 DUF2268 PF10026.4 gi|325969161|ref|YP_004245353.1| - 0.12 11.7 0.1 8.8 5.6 0.0 2.1 2 0 0 2 2 2 0 Predicted Zn-dependent protease (DUF2268) DUF965 PF06135.7 gi|325969161|ref|YP_004245353.1| - 0.13 12.3 0.1 0.59 10.2 0.0 2.1 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF965) FA_desaturase PF00487.19 gi|325969161|ref|YP_004245353.1| - 0.15 11.5 2.9 0.21 10.9 2.0 1.2 1 0 0 1 1 1 0 Fatty acid desaturase Hydrolase_3 PF08282.7 gi|325969162|ref|YP_004245354.1| - 1.7e-25 90.0 0.0 6.5e-17 61.9 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|325969162|ref|YP_004245354.1| - 3.9e-15 55.8 0.0 5.5e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|325969162|ref|YP_004245354.1| - 2.7e-07 30.9 0.5 0.00012 22.2 0.0 2.4 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|325969162|ref|YP_004245354.1| - 3.5e-06 26.1 0.0 3.2e-05 22.9 0.0 1.9 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase_like PF13242.1 gi|325969162|ref|YP_004245354.1| - 0.007 16.0 0.1 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|325969162|ref|YP_004245354.1| - 0.058 13.8 4.0 2.7 8.3 0.7 2.8 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|325969164|ref|YP_004245356.1| - 1.5e-17 64.2 0.0 4.2e-17 62.8 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily Pribosyltran PF00156.22 gi|325969165|ref|YP_004245357.1| - 4.5e-21 74.8 0.1 6e-21 74.4 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Caleosin PF05042.8 gi|325969165|ref|YP_004245357.1| - 0.087 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Caleosin related protein DUF1049 PF06305.6 gi|325969166|ref|YP_004245358.1| - 0.051 13.0 1.3 3.3 7.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF3098 PF11297.3 gi|325969166|ref|YP_004245358.1| - 0.078 12.7 2.7 1 9.1 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) Band_7 PF01145.20 gi|325969167|ref|YP_004245359.1| - 1.6e-33 116.1 1.6 2.1e-33 115.7 1.1 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|325969167|ref|YP_004245359.1| - 0.0014 18.1 0.1 0.005 16.3 0.1 1.9 1 1 0 1 1 1 1 SPFH domain-Band 7 family Glyco_hydro_80 PF13647.1 gi|325969167|ref|YP_004245359.1| - 0.073 12.3 0.1 0.094 11.9 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A OppC_N PF12911.2 gi|325969167|ref|YP_004245359.1| - 0.29 10.5 4.5 0.67 9.3 3.2 1.5 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C NfeD PF01957.13 gi|325969168|ref|YP_004245360.1| - 2.2e-18 66.7 4.9 2.2e-18 66.7 3.4 2.7 2 1 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|325969168|ref|YP_004245360.1| - 0.0018 17.9 0.1 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|325969168|ref|YP_004245360.1| - 0.082 11.6 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase SLAP PF03217.9 gi|325969168|ref|YP_004245360.1| - 0.21 11.7 1.3 1 9.5 0.2 2.4 2 1 0 2 2 2 0 Bacterial surface layer protein DUF1614 PF07758.6 gi|325969169|ref|YP_004245361.1| - 1.9e-34 118.9 17.3 2.9e-34 118.3 12.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) DUF3754 PF12576.3 gi|325969169|ref|YP_004245361.1| - 4.9 6.7 15.9 0.061 12.9 5.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3754) HAD_2 PF13419.1 gi|325969170|ref|YP_004245362.1| - 5.9e-29 101.5 0.0 7e-29 101.2 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|325969170|ref|YP_004245362.1| - 9e-15 55.6 0.5 2.9e-13 50.7 0.3 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|325969170|ref|YP_004245362.1| - 4.7e-10 39.9 0.0 6.5e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|325969170|ref|YP_004245362.1| - 5.5e-08 32.4 0.0 1.2e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_phosphat_B PF03767.9 gi|325969170|ref|YP_004245362.1| - 1.1e-05 24.9 0.1 0.063 12.6 0.0 2.3 2 0 0 2 2 2 2 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.1 gi|325969170|ref|YP_004245362.1| - 2.7e-05 23.9 0.0 0.0011 18.7 0.1 2.8 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|325969170|ref|YP_004245362.1| - 3e-05 23.7 0.0 0.0022 17.6 0.0 2.1 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.7 gi|325969170|ref|YP_004245362.1| - 0.0002 21.0 1.0 0.54 9.7 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase RBD-FIP PF09457.5 gi|325969171|ref|YP_004245363.1| - 0.1 12.3 0.2 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 FIP domain LAGLIDADG_1 PF00961.14 gi|325969171|ref|YP_004245363.1| - 0.27 11.8 1.8 1 9.9 0.2 2.0 2 0 0 2 2 2 0 LAGLIDADG endonuclease PHP_C PF13263.1 gi|325969172|ref|YP_004245364.1| - 4.4e-13 48.5 0.0 7.9e-13 47.7 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|325969172|ref|YP_004245364.1| - 7.9e-13 48.5 0.0 2.4e-12 46.9 0.0 1.7 1 1 0 1 1 1 1 PHP domain AMMECR1 PF01871.12 gi|325969173|ref|YP_004245365.1| - 1e-52 177.7 0.0 1.2e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Cytochrom_B561 PF03188.11 gi|325969174|ref|YP_004245366.1| - 0.0095 15.7 0.6 0.011 15.6 0.4 1.1 1 0 0 1 1 1 1 Eukaryotic cytochrome b561 Trep_Strep PF09605.5 gi|325969174|ref|YP_004245366.1| - 0.033 13.8 4.1 0.041 13.5 2.4 1.4 1 1 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) SPC25 PF06703.6 gi|325969174|ref|YP_004245366.1| - 0.12 11.8 3.1 0.74 9.3 1.5 1.9 1 1 1 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) DUF4234 PF14018.1 gi|325969174|ref|YP_004245366.1| - 0.18 11.5 4.8 0.22 11.3 3.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) DctQ PF04290.7 gi|325969174|ref|YP_004245366.1| - 0.19 11.4 2.1 0.22 11.3 1.4 1.1 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component Spo7 PF03907.8 gi|325969174|ref|YP_004245366.1| - 0.22 11.1 2.7 0.24 10.9 1.9 1.0 1 0 0 1 1 1 0 Spo7-like protein Mtp PF03821.11 gi|325969174|ref|YP_004245366.1| - 0.33 10.3 2.2 0.33 10.3 1.5 1.0 1 0 0 1 1 1 0 Golgi 4-transmembrane spanning transporter ASFV_J13L PF05568.6 gi|325969174|ref|YP_004245366.1| - 0.35 10.3 0.1 0.35 10.3 0.1 2.0 1 1 1 2 2 2 0 African swine fever virus J13L protein Tetraspannin PF00335.15 gi|325969174|ref|YP_004245366.1| - 0.93 8.7 7.2 1.1 8.5 5.0 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF3955 PF13127.1 gi|325969174|ref|YP_004245366.1| - 2.1 7.9 6.3 10 5.7 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) FixP_N PF14715.1 gi|325969174|ref|YP_004245366.1| - 5 6.6 5.8 4.6 6.7 1.1 2.1 2 0 0 2 2 2 0 N-terminal domain of cytochrome oxidase-cbb3, FixP DUF3139 PF11337.3 gi|325969174|ref|YP_004245366.1| - 5 7.4 9.2 1.1 9.5 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3139) DUF4405 PF14358.1 gi|325969174|ref|YP_004245366.1| - 7.3 6.8 10.1 0.97 9.6 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4405) Sec62 PF03839.11 gi|325969174|ref|YP_004245366.1| - 8.2 5.7 5.9 9.2 5.6 4.1 1.0 1 0 0 1 1 1 0 Translocation protein Sec62 Sigma_reg_N PF13800.1 gi|325969174|ref|YP_004245366.1| - 9.3 6.3 8.7 3.2 7.8 0.1 2.1 1 1 1 2 2 2 0 Sigma factor regulator N-terminal Cob_adeno_trans PF01923.13 gi|325969175|ref|YP_004245367.1| - 5.6e-10 39.2 0.0 1.7e-09 37.7 0.0 1.7 1 1 0 1 1 1 1 Cobalamin adenosyltransferase Pyr_redox_3 PF13738.1 gi|325969176|ref|YP_004245368.1| - 6e-09 36.2 0.1 0.00018 21.6 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|325969176|ref|YP_004245368.1| - 1.4e-08 34.8 0.0 9.6e-08 32.1 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|325969176|ref|YP_004245368.1| - 3.8e-08 32.6 0.5 5.4e-08 32.1 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|325969176|ref|YP_004245368.1| - 1.5e-07 31.6 2.8 6.2e-05 23.3 0.6 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|325969176|ref|YP_004245368.1| - 2.7e-07 30.5 0.5 6.1e-07 29.3 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|325969176|ref|YP_004245368.1| - 1.1e-05 24.5 1.5 1.6e-05 23.9 1.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|325969176|ref|YP_004245368.1| - 2.5e-05 23.4 0.4 3.9e-05 22.8 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|325969176|ref|YP_004245368.1| - 3.8e-05 22.7 0.4 6e-05 22.1 0.3 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.12 gi|325969176|ref|YP_004245368.1| - 0.0001 21.4 1.2 0.00018 20.6 0.3 1.7 2 0 0 2 2 2 1 Thi4 family Fer2_BFD PF04324.10 gi|325969176|ref|YP_004245368.1| - 0.00046 20.1 0.1 0.00085 19.3 0.0 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_oxidored PF12831.2 gi|325969176|ref|YP_004245368.1| - 0.00063 18.9 0.1 0.00088 18.4 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|325969176|ref|YP_004245368.1| - 0.0021 16.9 0.1 0.003 16.4 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|325969176|ref|YP_004245368.1| - 0.0024 16.4 0.3 0.0033 15.9 0.2 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_7 PF13241.1 gi|325969176|ref|YP_004245368.1| - 0.0045 17.2 0.5 1.7 8.9 0.1 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Amino_oxidase PF01593.19 gi|325969176|ref|YP_004245368.1| - 0.019 14.0 0.0 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase CPSase_L_chain PF00289.17 gi|325969176|ref|YP_004245368.1| - 0.04 14.0 0.1 1.9 8.6 0.0 2.3 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain TrkA_N PF02254.13 gi|325969176|ref|YP_004245368.1| - 0.061 13.3 1.0 0.3 11.0 0.4 2.2 2 0 0 2 2 2 0 TrkA-N domain DAO PF01266.19 gi|325969177|ref|YP_004245369.1| - 1.8e-71 240.9 0.0 2.1e-71 240.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|325969177|ref|YP_004245369.1| - 9.1e-09 34.6 0.4 1.9e-08 33.6 0.3 1.5 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|325969177|ref|YP_004245369.1| - 1.1e-08 34.9 0.6 2.7e-08 33.7 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|325969177|ref|YP_004245369.1| - 2.1e-07 31.2 0.5 6.2e-06 26.4 0.3 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|325969177|ref|YP_004245369.1| - 3.6e-07 29.5 1.5 9.4e-06 24.8 0.4 2.2 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|325969177|ref|YP_004245369.1| - 8.2e-05 21.2 0.1 0.0074 14.7 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|325969177|ref|YP_004245369.1| - 0.00058 19.7 2.3 0.0016 18.3 0.8 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|325969177|ref|YP_004245369.1| - 0.00088 18.4 0.5 0.0015 17.6 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|325969177|ref|YP_004245369.1| - 0.001 18.0 2.6 0.025 13.4 0.2 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|325969177|ref|YP_004245369.1| - 0.0023 17.5 0.1 0.0034 17.0 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|325969177|ref|YP_004245369.1| - 0.006 16.9 2.7 0.0092 16.3 0.6 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|325969177|ref|YP_004245369.1| - 0.0091 15.1 0.3 0.053 12.5 0.0 2.0 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_oxidored PF12831.2 gi|325969177|ref|YP_004245369.1| - 0.013 14.6 0.2 0.02 13.9 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase ApbA PF02558.11 gi|325969177|ref|YP_004245369.1| - 0.022 14.1 0.2 0.037 13.4 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|325969177|ref|YP_004245369.1| - 0.036 13.8 0.1 0.063 13.0 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.7 gi|325969177|ref|YP_004245369.1| - 0.038 12.9 0.1 0.061 12.2 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.9 gi|325969177|ref|YP_004245369.1| - 0.047 13.0 1.3 0.092 12.1 0.9 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|325969177|ref|YP_004245369.1| - 0.085 12.6 0.5 0.24 11.1 0.0 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding ThiF PF00899.16 gi|325969177|ref|YP_004245369.1| - 0.11 12.3 0.5 0.23 11.2 0.3 1.5 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.15 gi|325969177|ref|YP_004245369.1| - 0.15 12.1 1.2 0.26 11.3 0.2 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HSP20 PF00011.16 gi|325969178|ref|YP_004245370.1| - 4e-11 42.6 0.0 5.1e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PhoU PF01895.14 gi|325969179|ref|YP_004245371.1| - 3.3e-18 65.9 7.9 1.5e-15 57.3 0.2 2.7 3 0 0 3 3 3 2 PhoU domain Antitoxin-MazE PF04014.13 gi|325969179|ref|YP_004245371.1| - 4.3e-09 35.8 0.2 1.6e-08 34.0 0.1 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE MTS PF05175.9 gi|325969180|ref|YP_004245372.1| - 1.5e-10 40.7 0.0 1.9e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|325969180|ref|YP_004245372.1| - 5.2e-07 29.7 0.0 6.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|325969180|ref|YP_004245372.1| - 1.1e-05 24.7 0.2 1.5e-05 24.2 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|325969180|ref|YP_004245372.1| - 0.0019 17.8 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_16 PF10294.4 gi|325969180|ref|YP_004245372.1| - 0.043 13.2 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_31 PF13847.1 gi|325969180|ref|YP_004245372.1| - 0.045 13.3 0.0 0.061 12.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain HTH_5 PF01022.15 gi|325969181|ref|YP_004245373.1| - 4.3e-05 23.0 0.0 9.2e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|325969181|ref|YP_004245373.1| - 0.00091 19.5 0.0 0.0016 18.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|325969181|ref|YP_004245373.1| - 0.0029 17.5 0.0 0.011 15.6 0.0 1.9 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|325969181|ref|YP_004245373.1| - 0.0039 16.8 0.0 0.0079 15.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|325969181|ref|YP_004245373.1| - 0.0046 16.5 0.1 0.011 15.3 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|325969181|ref|YP_004245373.1| - 0.0057 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|325969181|ref|YP_004245373.1| - 0.047 13.2 0.1 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|325969181|ref|YP_004245373.1| - 0.084 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix OppC_N PF12911.2 gi|325969181|ref|YP_004245373.1| - 4.2 6.8 8.0 2.2 7.7 0.4 3.1 2 1 1 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Ribosomal_S25 PF03297.10 gi|325969183|ref|YP_004245375.1| - 7.7e-10 38.7 0.2 9.1e-10 38.5 0.2 1.1 1 0 0 1 1 1 1 S25 ribosomal protein DUF3665 PF12427.3 gi|325969183|ref|YP_004245375.1| - 0.026 13.8 0.0 0.069 12.5 0.0 1.8 1 0 0 1 1 1 0 Branched-chain amino acid aminotransferase TBP PF00352.16 gi|325969184|ref|YP_004245376.1| - 6.5e-70 230.5 0.0 7.5e-34 114.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|325969184|ref|YP_004245376.1| - 0.00054 19.9 0.0 0.89 9.6 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Hjc PF01870.13 gi|325969186|ref|YP_004245378.1| - 9.9e-25 85.9 0.0 1.2e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|325969186|ref|YP_004245378.1| - 0.0012 19.0 0.0 0.002 18.3 0.0 1.4 1 1 0 1 1 1 1 Nuclease-related domain 3H PF02829.9 gi|325969187|ref|YP_004245379.1| - 0.089 12.8 0.2 0.42 10.6 0.0 2.1 1 1 0 2 2 2 0 3H domain Lactamase_B_3 PF13483.1 gi|325969188|ref|YP_004245380.1| - 8.7e-26 90.5 0.0 1.1e-25 90.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|325969188|ref|YP_004245380.1| - 2.6e-21 76.0 0.0 3.3e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|325969188|ref|YP_004245380.1| - 1.1e-11 44.7 0.2 2.1e-11 43.8 0.1 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DAO PF01266.19 gi|325969189|ref|YP_004245381.1| - 1e-14 54.2 2.1 2.8e-06 26.4 0.0 2.9 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|325969189|ref|YP_004245381.1| - 7.6e-12 44.9 0.0 7.8e-05 21.8 0.0 3.1 3 0 0 3 3 3 2 FAD binding domain FAD_binding_2 PF00890.19 gi|325969189|ref|YP_004245381.1| - 4.3e-11 42.3 0.1 3.7e-05 22.7 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|325969189|ref|YP_004245381.1| - 4.8e-10 39.0 1.1 4.7e-05 22.6 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|325969189|ref|YP_004245381.1| - 3e-09 36.0 0.1 0.0002 20.1 0.0 2.8 2 1 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|325969189|ref|YP_004245381.1| - 1.9e-07 30.4 1.0 9.4e-07 28.1 0.7 2.1 1 1 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|325969189|ref|YP_004245381.1| - 5.2e-06 25.5 0.2 7.8e-06 24.9 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|325969189|ref|YP_004245381.1| - 5.2e-05 21.8 0.1 0.00049 18.6 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|325969189|ref|YP_004245381.1| - 7.7e-05 22.6 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|325969189|ref|YP_004245381.1| - 0.0001 22.2 2.1 0.00013 21.8 0.1 2.2 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|325969189|ref|YP_004245381.1| - 0.00037 19.5 0.3 0.0067 15.3 0.2 2.3 2 1 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.11 gi|325969189|ref|YP_004245381.1| - 0.0018 17.7 0.0 0.0029 17.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|325969189|ref|YP_004245381.1| - 0.0033 17.1 0.2 0.0068 16.0 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|325969189|ref|YP_004245381.1| - 0.029 14.7 0.2 0.26 11.7 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|325969189|ref|YP_004245381.1| - 0.029 14.1 0.1 0.056 13.2 0.0 1.4 1 0 0 1 1 1 0 ThiF family Pyr_redox_3 PF13738.1 gi|325969189|ref|YP_004245381.1| - 0.13 12.3 0.2 0.39 10.7 0.1 1.9 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase IF-2B PF01008.12 gi|325969190|ref|YP_004245382.1| - 5.6e-76 255.2 0.0 6.8e-76 254.9 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family Peptidase_M32 PF02074.10 gi|325969191|ref|YP_004245383.1| - 1.9e-165 551.2 1.0 2.1e-165 551.1 0.7 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase 4HB_MCP_1 PF12729.2 gi|325969191|ref|YP_004245383.1| - 0.088 12.1 0.1 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Mrr_cat PF04471.7 gi|325969192|ref|YP_004245384.1| - 5.2e-09 35.9 0.2 7.6e-09 35.3 0.1 1.2 1 0 0 1 1 1 1 Restriction endonuclease DUF91 PF01939.11 gi|325969192|ref|YP_004245384.1| - 2.7e-05 23.4 0.3 3.7e-05 22.9 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF91 UPF0102 PF02021.12 gi|325969192|ref|YP_004245384.1| - 0.00016 21.4 0.1 0.00032 20.5 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF4143 PF13635.1 gi|325969192|ref|YP_004245384.1| - 0.00024 21.2 0.1 0.00048 20.2 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) DUF234 PF03008.9 gi|325969192|ref|YP_004245384.1| - 0.027 14.6 0.0 0.05 13.7 0.0 1.4 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function Hjc PF01870.13 gi|325969192|ref|YP_004245384.1| - 0.062 12.8 0.2 0.12 11.9 0.1 1.6 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) MCE PF02470.15 gi|325969192|ref|YP_004245384.1| - 0.11 12.4 0.2 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 mce related protein RNase_PH PF01138.16 gi|325969193|ref|YP_004245385.1| - 8e-32 110.3 0.0 1.3e-31 109.6 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|325969193|ref|YP_004245385.1| - 1.2e-05 25.1 0.2 5.4e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|325969194|ref|YP_004245386.1| - 3e-36 124.6 0.0 4.2e-36 124.1 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|325969194|ref|YP_004245386.1| - 1.2e-14 53.9 0.0 2.2e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Acetyltransf_1 PF00583.19 gi|325969195|ref|YP_004245387.1| - 7.4e-18 64.3 0.0 1.1e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|325969195|ref|YP_004245387.1| - 2.3e-15 56.8 0.0 2.7e-15 56.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|325969195|ref|YP_004245387.1| - 1.5e-13 50.6 0.0 2.1e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|325969195|ref|YP_004245387.1| - 5.4e-12 45.8 0.0 6.8e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|325969195|ref|YP_004245387.1| - 4.7e-10 39.3 0.1 9.9e-10 38.3 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|325969195|ref|YP_004245387.1| - 1.4e-08 34.3 0.0 2.1e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|325969195|ref|YP_004245387.1| - 6.7e-08 32.7 0.0 8.7e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|325969195|ref|YP_004245387.1| - 6.1e-07 29.4 0.0 8.4e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|325969195|ref|YP_004245387.1| - 0.003 17.4 0.0 0.0046 16.8 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Mec-17 PF05301.6 gi|325969195|ref|YP_004245387.1| - 0.0047 16.8 0.0 0.0075 16.2 0.0 1.4 1 1 0 1 1 1 1 Touch receptor neuron protein Mec-17 Acetyltransf_6 PF13480.1 gi|325969195|ref|YP_004245387.1| - 0.031 14.2 0.2 0.1 12.5 0.2 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Glyco_tranf_2_3 PF13641.1 gi|325969197|ref|YP_004245389.1| - 4.2e-30 105.2 0.0 5.5e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|325969197|ref|YP_004245389.1| - 6.9e-18 65.0 3.3 1.1e-17 64.3 2.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|325969197|ref|YP_004245389.1| - 2.8e-17 62.9 0.1 4.7e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|325969197|ref|YP_004245389.1| - 1.7e-05 24.0 0.0 3.4e-05 23.0 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|325969197|ref|YP_004245389.1| - 0.00015 21.1 0.0 0.00023 20.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.10 gi|325969197|ref|YP_004245389.1| - 0.0074 14.7 0.0 0.0074 14.7 0.0 2.1 2 0 0 2 2 2 1 Chitin synthase DUF983 PF06170.7 gi|325969197|ref|YP_004245389.1| - 0.12 12.4 6.6 0.43 10.7 4.6 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF983) RloB PF13707.1 gi|325969197|ref|YP_004245389.1| - 0.15 11.7 0.0 0.25 10.9 0.0 1.3 1 0 0 1 1 1 0 RloB-like protein AAA_21 PF13304.1 gi|325969198|ref|YP_004245390.1| - 5.5e-13 49.5 0.0 8.1e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|325969198|ref|YP_004245390.1| - 2.7e-09 37.6 0.1 3.5e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|325969198|ref|YP_004245390.1| - 1.1e-06 28.0 0.1 1.1e-05 24.8 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|325969198|ref|YP_004245390.1| - 3.8e-06 26.3 0.1 7.6e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|325969198|ref|YP_004245390.1| - 6.7e-05 23.0 0.0 0.03 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|325969198|ref|YP_004245390.1| - 0.0002 20.9 0.0 0.00031 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain DUF2813 PF11398.3 gi|325969198|ref|YP_004245390.1| - 0.00049 19.3 0.7 0.0009 18.4 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) AAA_15 PF13175.1 gi|325969198|ref|YP_004245390.1| - 0.00052 19.1 0.1 0.00089 18.4 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.22 gi|325969198|ref|YP_004245390.1| - 0.00083 19.6 0.0 0.0015 18.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.1 gi|325969198|ref|YP_004245390.1| - 0.00093 19.2 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|325969198|ref|YP_004245390.1| - 0.0019 19.0 0.4 0.0038 18.0 0.3 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|325969198|ref|YP_004245390.1| - 0.0048 16.5 0.1 0.027 14.1 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.1 gi|325969198|ref|YP_004245390.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|325969198|ref|YP_004245390.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|325969198|ref|YP_004245390.1| - 0.016 14.9 0.0 0.054 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|325969198|ref|YP_004245390.1| - 0.019 14.6 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|325969198|ref|YP_004245390.1| - 0.023 14.2 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|325969198|ref|YP_004245390.1| - 0.03 13.7 0.1 0.049 13.1 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF258 PF03193.11 gi|325969198|ref|YP_004245390.1| - 0.036 13.2 0.0 0.055 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 APS_kinase PF01583.15 gi|325969198|ref|YP_004245390.1| - 0.037 13.6 0.0 0.064 12.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|325969198|ref|YP_004245390.1| - 0.038 13.3 0.0 0.068 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|325969198|ref|YP_004245390.1| - 0.083 11.4 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|325969198|ref|YP_004245390.1| - 0.14 10.9 0.1 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PduV-EutP PF10662.4 gi|325969198|ref|YP_004245390.1| - 0.15 11.5 0.1 0.28 10.6 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.12 gi|325969198|ref|YP_004245390.1| - 0.16 11.3 0.0 0.28 10.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein HIT PF01230.18 gi|325969200|ref|YP_004245392.1| - 3.9e-11 43.3 0.1 7.9e-11 42.3 0.0 1.5 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|325969200|ref|YP_004245392.1| - 2.6e-08 34.0 0.0 3.9e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|325969200|ref|YP_004245392.1| - 1e-07 31.6 2.4 3.8e-07 29.7 1.6 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Hist_deacetyl PF00850.14 gi|325969202|ref|YP_004245394.1| - 5.2e-72 242.7 0.0 6e-72 242.5 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain DNA_RNApol_7kD PF03604.8 gi|325969203|ref|YP_004245395.1| - 0.00011 21.5 3.9 0.00023 20.5 2.7 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|325969203|ref|YP_004245395.1| - 0.00045 19.9 0.3 0.2 11.4 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|325969203|ref|YP_004245395.1| - 0.00088 19.2 2.0 0.0011 19.0 0.3 1.8 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|325969203|ref|YP_004245395.1| - 0.0085 15.2 0.5 0.28 10.4 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-C2H2 PF00096.21 gi|325969203|ref|YP_004245395.1| - 0.012 15.8 1.5 1.7 9.1 0.0 2.4 2 1 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|325969203|ref|YP_004245395.1| - 0.024 14.9 0.7 2.5 8.5 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.2 gi|325969203|ref|YP_004245395.1| - 0.027 14.3 0.2 0.16 11.7 0.1 1.9 1 1 1 2 2 2 0 Double zinc ribbon zf-C2HC5 PF06221.8 gi|325969203|ref|YP_004245395.1| - 0.028 14.1 0.1 0.039 13.7 0.1 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-CSL PF05207.8 gi|325969203|ref|YP_004245395.1| - 0.03 13.8 0.7 0.081 12.4 0.5 1.7 1 1 0 1 1 1 0 CSL zinc finger zinc_ribbon_2 PF13240.1 gi|325969203|ref|YP_004245395.1| - 0.032 13.7 2.5 0.34 10.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|325969203|ref|YP_004245395.1| - 0.037 13.9 0.1 0.046 13.6 0.0 1.2 1 0 0 1 1 1 0 IBR domain HypA PF01155.14 gi|325969203|ref|YP_004245395.1| - 0.038 13.6 0.1 0.042 13.5 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-RING_3 PF14369.1 gi|325969203|ref|YP_004245395.1| - 0.044 13.7 0.4 0.066 13.2 0.3 1.3 1 0 0 1 1 1 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|325969203|ref|YP_004245395.1| - 0.059 13.3 0.8 0.12 12.4 0.6 1.5 1 1 0 1 1 1 0 Zinc ribbon domain TerY-C PF15616.1 gi|325969203|ref|YP_004245395.1| - 0.063 13.2 0.0 0.063 13.1 0.0 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain DUF2072 PF09845.4 gi|325969203|ref|YP_004245395.1| - 0.074 12.9 0.2 0.094 12.6 0.2 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) zf-C2H2_4 PF13894.1 gi|325969203|ref|YP_004245395.1| - 0.079 13.3 0.4 5.1 7.6 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Cys_rich_CPXG PF14255.1 gi|325969203|ref|YP_004245395.1| - 0.17 11.7 0.1 0.17 11.7 0.1 1.5 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ribosomal_L37e PF01907.14 gi|325969203|ref|YP_004245395.1| - 0.36 10.6 2.0 1.3 8.8 1.4 1.8 1 1 0 1 1 1 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.7 gi|325969203|ref|YP_004245395.1| - 0.86 8.9 3.5 4.1 6.8 2.5 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding CTP_transf_2 PF01467.21 gi|325969204|ref|YP_004245396.1| - 1.9e-12 47.5 0.0 2.7e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase ATP-sulfurylase PF01747.12 gi|325969204|ref|YP_004245396.1| - 0.0011 18.3 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 2 ATP-sulfurylase 4HBT PF03061.17 gi|325969205|ref|YP_004245397.1| - 5e-30 103.4 1.6 3.7e-14 52.5 0.2 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|325969205|ref|YP_004245397.1| - 1.7e-06 28.4 0.0 6.2e-05 23.4 0.0 2.2 1 1 0 2 2 2 1 Thioesterase-like superfamily SBDS PF01172.13 gi|325969206|ref|YP_004245398.1| - 5.9e-25 86.8 0.0 9.4e-25 86.2 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|325969206|ref|YP_004245398.1| - 1.3e-20 73.3 0.5 1.9e-20 72.8 0.3 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.6 gi|325969206|ref|YP_004245398.1| - 0.0077 15.8 0.2 0.033 13.7 0.0 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|325969206|ref|YP_004245398.1| - 0.016 15.0 0.0 0.03 14.1 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus ABC2_membrane PF01061.19 gi|325969207|ref|YP_004245399.1| - 0.011 14.8 31.5 0.0074 15.4 20.8 1.4 1 1 0 1 1 1 0 ABC-2 type transporter YbjM PF11045.3 gi|325969207|ref|YP_004245399.1| - 0.097 12.4 0.2 0.097 12.4 0.1 3.1 2 1 0 3 3 3 0 Putative inner membrane protein of Enterobacteriaceae ABC_tran PF00005.22 gi|325969208|ref|YP_004245400.1| - 6.8e-27 94.4 0.0 1.3e-26 93.5 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|325969208|ref|YP_004245400.1| - 5.9e-14 52.7 0.0 1.3e-07 31.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|325969208|ref|YP_004245400.1| - 0.00042 19.4 0.0 0.46 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|325969208|ref|YP_004245400.1| - 0.001 18.5 0.0 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|325969208|ref|YP_004245400.1| - 0.0032 17.6 0.0 0.02 15.1 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|325969208|ref|YP_004245400.1| - 0.0046 17.3 0.0 0.0082 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|325969208|ref|YP_004245400.1| - 0.007 15.6 0.0 2.2 7.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|325969208|ref|YP_004245400.1| - 0.015 14.7 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|325969208|ref|YP_004245400.1| - 0.018 15.0 0.0 0.058 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|325969208|ref|YP_004245400.1| - 0.021 13.9 0.0 0.032 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|325969208|ref|YP_004245400.1| - 0.025 14.5 0.0 0.048 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain UPF0079 PF02367.12 gi|325969208|ref|YP_004245400.1| - 0.032 13.8 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|325969208|ref|YP_004245400.1| - 0.033 14.3 0.0 0.073 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|325969208|ref|YP_004245400.1| - 0.044 13.4 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|325969208|ref|YP_004245400.1| - 0.047 13.1 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|325969208|ref|YP_004245400.1| - 0.061 13.2 0.0 0.099 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|325969208|ref|YP_004245400.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_17 PF13207.1 gi|325969208|ref|YP_004245400.1| - 0.1 13.3 0.0 0.2 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|325969208|ref|YP_004245400.1| - 0.23 9.8 0.0 0.45 8.9 0.0 1.4 2 0 0 2 2 2 0 AAA domain S4 PF01479.20 gi|325969209|ref|YP_004245401.1| - 2.7e-17 61.9 0.2 6.4e-17 60.7 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|325969209|ref|YP_004245401.1| - 0.0004 20.7 1.1 0.00073 19.8 0.8 1.5 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain RmuC PF02646.11 gi|325969210|ref|YP_004245402.1| - 0.0011 17.9 0.0 0.0022 16.9 0.0 1.6 1 0 0 1 1 1 1 RmuC family DUF869 PF05911.6 gi|325969210|ref|YP_004245402.1| - 0.0027 16.0 0.7 0.0035 15.6 0.5 1.3 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Vac_Fusion PF02346.11 gi|325969210|ref|YP_004245402.1| - 0.0037 16.6 2.3 0.017 14.5 1.2 2.5 2 1 1 3 3 3 1 Chordopoxvirus fusion protein RPW8 PF05659.6 gi|325969210|ref|YP_004245402.1| - 0.0037 16.7 0.6 0.067 12.7 0.0 2.2 2 0 0 2 2 2 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 DHC_N2 PF08393.8 gi|325969210|ref|YP_004245402.1| - 0.0038 15.7 1.5 0.018 13.5 0.6 1.9 2 0 0 2 2 2 1 Dynein heavy chain, N-terminal region 2 Occludin_ELL PF07303.8 gi|325969210|ref|YP_004245402.1| - 0.0042 17.7 4.7 0.0042 17.7 3.2 2.3 2 1 1 3 3 3 2 Occludin homology domain DUF3552 PF12072.3 gi|325969210|ref|YP_004245402.1| - 0.0051 16.0 2.1 0.0051 16.0 1.4 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF3552) FAM92 PF06730.6 gi|325969210|ref|YP_004245402.1| - 0.0075 15.6 2.4 0.0075 15.6 1.6 1.7 1 1 1 2 2 2 1 FAM92 protein GAS PF13851.1 gi|325969210|ref|YP_004245402.1| - 0.0085 15.2 1.1 0.0085 15.2 0.8 1.7 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding V_ATPase_I PF01496.14 gi|325969210|ref|YP_004245402.1| - 0.017 12.9 2.6 0.018 12.8 1.8 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family BAR PF03114.13 gi|325969210|ref|YP_004245402.1| - 0.023 14.2 3.5 0.04 13.4 2.1 2.0 1 1 0 1 1 1 0 BAR domain TipAS PF07739.8 gi|325969210|ref|YP_004245402.1| - 0.025 14.8 3.9 0.048 13.9 0.2 2.6 1 1 2 3 3 3 0 TipAS antibiotic-recognition domain TBPIP PF07106.8 gi|325969210|ref|YP_004245402.1| - 0.026 14.0 1.4 0.049 13.1 0.1 1.9 2 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) BLOC1_2 PF10046.4 gi|325969210|ref|YP_004245402.1| - 0.03 14.4 0.3 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Hemagglutinin PF00509.13 gi|325969210|ref|YP_004245402.1| - 0.053 11.6 2.3 0.11 10.6 1.5 1.5 1 1 0 1 1 1 0 Haemagglutinin DUF3029 PF11230.3 gi|325969210|ref|YP_004245402.1| - 0.058 11.5 0.2 0.066 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3029) DUF342 PF03961.8 gi|325969210|ref|YP_004245402.1| - 0.072 11.4 1.0 0.094 11.1 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Sec8_exocyst PF04048.9 gi|325969210|ref|YP_004245402.1| - 0.074 12.6 0.7 0.14 11.7 0.1 1.7 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain DUF2713 PF10897.3 gi|325969210|ref|YP_004245402.1| - 0.097 11.9 2.0 0.5 9.5 1.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2713) DUF1470 PF07336.6 gi|325969210|ref|YP_004245402.1| - 0.17 12.2 2.1 3.3 8.0 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1470) DUF16 PF01519.11 gi|325969210|ref|YP_004245402.1| - 0.26 11.5 3.3 1.3 9.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF16 DUF4375 PF14300.1 gi|325969210|ref|YP_004245402.1| - 0.79 9.7 7.5 0.51 10.3 2.7 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4375) DUF4546 PF15079.1 gi|325969210|ref|YP_004245402.1| - 2.9 7.0 16.8 1.7 7.7 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4546) DUF4398 PF14346.1 gi|325969210|ref|YP_004245402.1| - 3.7 7.6 6.3 1 9.4 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) TelA PF05816.6 gi|325969210|ref|YP_004245402.1| - 6 5.4 9.5 0.52 8.9 2.0 2.0 1 1 1 2 2 2 0 Toxic anion resistance protein (TelA) Asp_protease_2 PF13650.1 gi|325969211|ref|YP_004245403.1| - 2.9e-07 30.9 0.1 1e-06 29.1 0.1 1.8 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|325969211|ref|YP_004245403.1| - 2.5e-06 27.1 0.1 4.1e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|325969211|ref|YP_004245403.1| - 0.014 15.3 0.2 0.02 14.7 0.1 1.5 1 1 0 1 1 1 0 Retroviral aspartyl protease Put_DNA-bind_N PF06971.8 gi|325969211|ref|YP_004245403.1| - 0.054 13.2 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus NTP_transf_2 PF01909.18 gi|325969212|ref|YP_004245404.1| - 2.5e-08 34.1 0.2 2.9e-08 33.9 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.9 gi|325969213|ref|YP_004245405.1| - 0.00091 19.0 0.0 0.00091 19.0 0.0 1.0 1 0 0 1 1 1 1 HEPN domain Asp_protease_2 PF13650.1 gi|325969214|ref|YP_004245406.1| - 1.4e-09 38.2 0.3 2.2e-09 37.7 0.2 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|325969214|ref|YP_004245406.1| - 3.9e-07 29.7 0.0 5.7e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|325969214|ref|YP_004245406.1| - 1.1e-05 25.3 0.0 1.3e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp_protease PF09668.5 gi|325969214|ref|YP_004245406.1| - 0.07 12.6 0.1 0.11 12.0 0.0 1.4 1 1 0 1 1 1 0 Aspartyl protease Arch_ATPase PF01637.13 gi|325969215|ref|YP_004245407.1| - 8.8e-08 32.1 0.2 1e-07 31.9 0.2 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|325969215|ref|YP_004245407.1| - 1.2e-05 25.3 0.1 1.9e-05 24.7 0.1 1.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|325969215|ref|YP_004245407.1| - 0.00054 19.8 0.0 0.00068 19.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|325969215|ref|YP_004245407.1| - 0.01 14.7 0.0 0.011 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|325969215|ref|YP_004245407.1| - 0.028 14.5 0.0 0.039 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|325969215|ref|YP_004245407.1| - 0.042 14.0 0.0 0.059 13.5 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|325969215|ref|YP_004245407.1| - 0.11 11.6 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 OrfB_IS605 PF01385.14 gi|325969216|ref|YP_004245408.1| - 3.7e-71 239.1 0.8 3.7e-71 239.1 0.6 1.4 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|325969216|ref|YP_004245408.1| - 1.7e-18 66.0 0.0 5.2e-18 64.4 0.0 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|325969216|ref|YP_004245408.1| - 0.022 14.0 0.5 0.072 12.4 0.4 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Sec5 PF15469.1 gi|325969216|ref|YP_004245408.1| - 0.058 13.1 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Exocyst complex component Sec5 Rifin_STEVOR PF02009.11 gi|325969219|ref|YP_004245411.1| - 0.41 10.2 1.6 0.84 9.2 1.1 1.4 1 0 0 1 1 1 0 Rifin/stevor family DUF1626 PF07788.6 gi|325969220|ref|YP_004245412.1| - 9.6e-19 66.9 2.3 2.5e-18 65.6 1.6 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|325969220|ref|YP_004245412.1| - 1.2e-06 28.2 9.5 3.6e-06 26.6 6.5 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) APG6 PF04111.7 gi|325969220|ref|YP_004245412.1| - 0.0083 15.2 9.2 0.023 13.7 2.1 2.2 1 1 1 2 2 2 1 Autophagy protein Apg6 DUF2312 PF10073.4 gi|325969220|ref|YP_004245412.1| - 0.01 15.1 5.5 5.5 6.4 0.1 3.6 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) Dor1 PF04124.7 gi|325969220|ref|YP_004245412.1| - 0.01 14.3 2.8 1.2 7.5 0.1 2.6 1 1 1 2 2 2 0 Dor1-like family Herpes_U30 PF04523.8 gi|325969220|ref|YP_004245412.1| - 0.012 13.1 0.4 0.014 12.9 0.3 1.2 1 0 0 1 1 1 0 Herpes virus tegument protein U30 V_ATPase_I PF01496.14 gi|325969220|ref|YP_004245412.1| - 0.012 13.5 4.2 0.18 9.5 0.9 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HapK PF11639.3 gi|325969220|ref|YP_004245412.1| - 0.013 16.0 0.3 0.055 14.0 0.0 2.2 3 0 0 3 3 1 0 REDY-like protein HapK Baculo_PEP_C PF04513.7 gi|325969220|ref|YP_004245412.1| - 0.015 15.0 5.7 0.24 11.2 2.7 2.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF972 PF06156.8 gi|325969220|ref|YP_004245412.1| - 0.02 15.2 6.9 0.19 12.0 0.4 2.8 1 1 2 3 3 2 0 Protein of unknown function (DUF972) IncA PF04156.9 gi|325969220|ref|YP_004245412.1| - 0.024 14.2 13.8 0.36 10.4 5.7 2.4 1 1 2 3 3 3 0 IncA protein Phage_GPO PF05929.6 gi|325969220|ref|YP_004245412.1| - 0.028 13.6 3.5 0.062 12.5 0.3 2.4 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase MutS_III PF05192.13 gi|325969220|ref|YP_004245412.1| - 0.038 13.7 0.0 0.087 12.6 0.0 1.6 1 1 0 1 1 1 0 MutS domain III EMP24_GP25L PF01105.19 gi|325969220|ref|YP_004245412.1| - 0.04 13.6 5.2 0.059 13.0 1.2 2.6 1 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD MCPsignal PF00015.16 gi|325969220|ref|YP_004245412.1| - 0.059 12.9 4.5 0.069 12.6 1.7 1.9 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain WXG100 PF06013.7 gi|325969220|ref|YP_004245412.1| - 0.092 12.7 4.1 2.4 8.2 0.0 3.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF948 PF06103.6 gi|325969220|ref|YP_004245412.1| - 0.097 12.5 4.2 4.7 7.1 1.2 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) EzrA PF06160.7 gi|325969220|ref|YP_004245412.1| - 0.11 10.6 9.6 0.61 8.2 0.9 2.4 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA AAA_13 PF13166.1 gi|325969220|ref|YP_004245412.1| - 0.11 10.9 0.2 0.15 10.4 0.2 1.1 1 0 0 1 1 1 0 AAA domain DUF4200 PF13863.1 gi|325969220|ref|YP_004245412.1| - 0.13 12.2 7.5 0.22 11.4 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Mod_r PF07200.8 gi|325969220|ref|YP_004245412.1| - 0.13 12.2 9.5 2.7 7.8 0.3 2.9 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein AATF-Che1 PF13339.1 gi|325969220|ref|YP_004245412.1| - 0.16 12.1 3.2 1.4 9.0 2.3 2.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF4559 PF15112.1 gi|325969220|ref|YP_004245412.1| - 0.17 11.0 3.3 0.26 10.4 2.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) NPV_P10 PF05531.7 gi|325969220|ref|YP_004245412.1| - 0.21 11.8 1.8 2.3 8.5 0.8 2.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.1 gi|325969220|ref|YP_004245412.1| - 0.41 10.9 9.3 9.3 6.6 0.1 4.0 1 1 3 4 4 4 0 Snapin/Pallidin Hemerythrin PF01814.18 gi|325969220|ref|YP_004245412.1| - 0.47 10.6 6.3 7 6.8 0.1 2.8 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Tweety PF04906.8 gi|325969220|ref|YP_004245412.1| - 0.48 8.7 3.9 0.49 8.7 1.4 1.9 1 1 1 2 2 2 0 Tweety DUF1664 PF07889.7 gi|325969220|ref|YP_004245412.1| - 0.62 9.8 6.1 4.8 7.0 1.0 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Cluap1 PF10234.4 gi|325969220|ref|YP_004245412.1| - 0.72 9.0 9.5 2.2 7.4 0.8 2.2 1 1 1 2 2 2 0 Clusterin-associated protein-1 DASH_Dad3 PF08656.5 gi|325969220|ref|YP_004245412.1| - 0.91 9.2 6.2 9.4 6.0 0.2 4.0 2 2 1 3 3 3 0 DASH complex subunit Dad3 DUF16 PF01519.11 gi|325969220|ref|YP_004245412.1| - 1.2 9.4 8.9 1.7 8.9 0.3 3.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF4164 PF13747.1 gi|325969220|ref|YP_004245412.1| - 1.2 9.3 17.3 20 5.4 3.6 3.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Laminin_II PF06009.7 gi|325969220|ref|YP_004245412.1| - 1.3 8.7 5.2 1.6 8.4 1.1 2.4 1 1 1 2 2 2 0 Laminin Domain II Prominin PF05478.6 gi|325969220|ref|YP_004245412.1| - 1.5 6.2 4.7 2.4 5.5 0.4 2.0 1 1 1 2 2 2 0 Prominin DASH_Duo1 PF08651.5 gi|325969220|ref|YP_004245412.1| - 1.9 8.1 5.5 1.3 8.6 0.2 2.9 2 1 1 3 3 3 0 DASH complex subunit Duo1 Latarcin PF10279.4 gi|325969220|ref|YP_004245412.1| - 1.9 8.7 8.2 9.1e+02 0.1 5.4 3.3 1 1 0 1 1 1 0 Latarcin precursor Med4 PF10018.4 gi|325969220|ref|YP_004245412.1| - 2.4 7.4 6.4 5.5 6.3 0.1 3.0 1 1 1 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 TPR_MLP1_2 PF07926.7 gi|325969220|ref|YP_004245412.1| - 4.4 7.0 7.4 16 5.2 5.1 1.9 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Syntaxin-6_N PF09177.6 gi|325969220|ref|YP_004245412.1| - 4.8 7.6 6.7 5.2 7.5 0.4 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal FlgN PF05130.7 gi|325969220|ref|YP_004245412.1| - 5.7 7.1 16.6 4.7 7.4 5.1 3.1 1 1 1 2 2 2 0 FlgN protein zf-C4H2 PF10146.4 gi|325969220|ref|YP_004245412.1| - 9.5 6.1 8.1 15 5.5 0.4 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein DUF86 PF01934.12 gi|325969221|ref|YP_004245413.1| - 7.6e-14 51.3 0.1 1.9e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|325969221|ref|YP_004245413.1| - 0.0024 18.1 2.0 0.0064 16.7 0.5 2.3 2 1 0 2 2 2 1 Nucleotidyltransferase domain Y_phosphatase3C PF13348.1 gi|325969221|ref|YP_004245413.1| - 0.041 14.0 0.2 0.24 11.5 0.0 2.4 2 0 0 2 2 2 0 Tyrosine phosphatase family C-terminal region PaREP1 PF05942.6 gi|325969222|ref|YP_004245414.1| - 7.7e-11 41.8 0.0 1.1e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family XPG_I_2 PF12813.2 gi|325969222|ref|YP_004245414.1| - 0.072 12.5 0.1 0.076 12.4 0.1 1.2 1 1 0 1 1 1 0 XPG domain containing PaREP1 PF05942.6 gi|325969224|ref|YP_004245416.1| - 2e-32 111.4 2.4 2.9e-32 110.9 1.7 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|325969224|ref|YP_004245416.1| - 0.017 14.7 0.9 0.062 13.0 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF357) HSA PF07529.8 gi|325969224|ref|YP_004245416.1| - 0.023 14.4 2.5 0.57 10.0 1.8 2.2 2 0 0 2 2 2 0 HSA HEPN PF05168.9 gi|325969224|ref|YP_004245416.1| - 0.032 14.1 2.0 0.038 13.8 0.7 1.7 2 0 0 2 2 2 0 HEPN domain Peptidase_S29 PF02907.10 gi|325969224|ref|YP_004245416.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease PaREP1 PF05942.6 gi|325969225|ref|YP_004245417.1| - 8e-31 106.2 0.1 9.5e-31 106.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SelB-wing_2 PF09106.6 gi|325969225|ref|YP_004245417.1| - 0.23 11.3 2.1 0.94 9.4 0.2 2.2 2 0 0 2 2 2 0 Elongation factor SelB, winged helix Glycos_transf_1 PF00534.15 gi|325969226|ref|YP_004245418.1| - 2.8e-17 62.6 0.1 3.4e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325969226|ref|YP_004245418.1| - 2.1e-05 24.6 0.0 3.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325969226|ref|YP_004245418.1| - 0.00073 19.7 0.0 0.0013 18.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Minor_capsid_1 PF10665.4 gi|325969227|ref|YP_004245419.1| - 0.02 14.7 0.2 0.021 14.6 0.1 1.2 1 0 0 1 1 1 0 Minor capsid protein CbiA PF01656.18 gi|325969228|ref|YP_004245420.1| - 0.046 13.1 0.0 0.074 12.4 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|325969228|ref|YP_004245420.1| - 0.12 12.2 0.1 5.5 6.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain TcdB_toxin_midN PF12256.3 gi|325969229|ref|YP_004245421.1| - 0.075 12.4 0.0 3.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Insecticide toxin TcdB middle/N-terminal region Methyltransf_21 PF05050.7 gi|325969231|ref|YP_004245423.1| - 7.1e-08 32.5 0.3 0.00099 19.0 0.0 2.2 1 1 1 2 2 2 2 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|325969231|ref|YP_004245423.1| - 0.00088 19.8 0.0 0.0012 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|325969231|ref|YP_004245423.1| - 0.015 13.9 0.0 0.022 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_22 PF13383.1 gi|325969231|ref|YP_004245423.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|325969231|ref|YP_004245423.1| - 0.13 12.0 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|325969232|ref|YP_004245424.1| - 5.5e-23 81.2 0.0 9.3e-23 80.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|325969232|ref|YP_004245424.1| - 1.6e-16 60.6 0.1 5.3e-16 58.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|325969232|ref|YP_004245424.1| - 4.4e-05 23.6 0.0 0.0001 22.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|325969232|ref|YP_004245424.1| - 0.00013 21.6 0.0 0.00042 20.0 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Papo_T_antigen PF02380.10 gi|325969232|ref|YP_004245424.1| - 0.0027 17.6 0.1 0.0049 16.7 0.1 1.3 1 0 0 1 1 1 1 T-antigen specific domain PaREP1 PF05942.6 gi|325969233|ref|YP_004245425.1| - 4.5e-31 107.0 2.3 6.1e-31 106.6 1.6 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|325969233|ref|YP_004245425.1| - 0.00048 19.7 0.4 0.0014 18.3 0.2 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF357) DUF4398 PF14346.1 gi|325969233|ref|YP_004245425.1| - 0.12 12.4 3.7 0.23 11.5 2.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) APG6 PF04111.7 gi|325969234|ref|YP_004245426.1| - 0.00015 20.8 1.9 0.0002 20.5 1.3 1.1 1 0 0 1 1 1 1 Autophagy protein Apg6 COG2 PF06148.6 gi|325969234|ref|YP_004245426.1| - 0.00097 19.0 2.3 0.92 9.3 0.7 3.0 2 1 1 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 Hemerythrin PF01814.18 gi|325969234|ref|YP_004245426.1| - 0.0046 17.1 0.2 0.011 15.9 0.1 1.6 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain CCDC155 PF14662.1 gi|325969234|ref|YP_004245426.1| - 0.0057 16.2 2.5 0.01 15.4 1.7 1.4 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 DUF972 PF06156.8 gi|325969234|ref|YP_004245426.1| - 0.019 15.2 4.8 0.31 11.4 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF972) PTRF_SDPR PF15237.1 gi|325969234|ref|YP_004245426.1| - 0.02 14.2 2.3 0.036 13.4 1.3 1.5 1 1 1 2 2 2 0 PTRF/SDPR family ERM PF00769.14 gi|325969234|ref|YP_004245426.1| - 0.028 13.9 2.1 0.042 13.3 1.5 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family AAA_15 PF13175.1 gi|325969234|ref|YP_004245426.1| - 0.045 12.8 0.1 0.065 12.2 0.1 1.1 1 0 0 1 1 1 0 AAA ATPase domain DUF1626 PF07788.6 gi|325969234|ref|YP_004245426.1| - 0.056 13.2 1.0 0.13 12.0 0.7 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1626) Mod_r PF07200.8 gi|325969234|ref|YP_004245426.1| - 0.1 12.5 1.8 0.2 11.5 1.2 1.5 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein NTP_transf_3 PF12804.2 gi|325969235|ref|YP_004245427.1| - 5.9e-16 58.9 0.0 6.8e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|325969235|ref|YP_004245427.1| - 1e-06 28.5 0.0 1.5e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.14 gi|325969235|ref|YP_004245427.1| - 0.00015 21.3 0.0 0.00034 20.2 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|325969235|ref|YP_004245427.1| - 0.0011 18.3 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.11 gi|325969235|ref|YP_004245427.1| - 0.0015 17.5 0.0 0.0021 17.0 0.0 1.3 1 0 0 1 1 1 1 Guanylyl transferase CofC like FMN_dh PF01070.13 gi|325969235|ref|YP_004245427.1| - 0.0075 15.1 0.0 0.0087 14.9 0.0 1.1 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NTP_transf_3 PF12804.2 gi|325969236|ref|YP_004245428.1| - 1.2e-22 80.6 0.0 1.6e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|325969236|ref|YP_004245428.1| - 0.021 13.8 0.3 0.12 11.3 0.0 2.0 2 0 0 2 2 2 0 Guanylyl transferase CofC like CTP_transf_3 PF02348.14 gi|325969236|ref|YP_004245428.1| - 0.14 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase DUF1517 PF07466.6 gi|325969237|ref|YP_004245429.1| - 0.048 12.6 1.0 0.076 11.9 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1517) SKG6 PF08693.5 gi|325969237|ref|YP_004245429.1| - 0.086 12.1 13.7 0.11 11.8 5.7 2.8 2 0 0 2 2 2 0 Transmembrane alpha-helix domain LRRC37AB_C PF14914.1 gi|325969237|ref|YP_004245429.1| - 0.16 11.3 0.9 0.34 10.3 0.6 1.6 1 0 0 1 1 1 0 LRRC37A/B like protein 1 C-terminal domain TadE PF07811.7 gi|325969237|ref|YP_004245429.1| - 0.47 10.3 5.9 0.49 10.3 0.0 2.4 2 0 0 2 2 2 0 TadE-like protein Vpu PF00558.14 gi|325969237|ref|YP_004245429.1| - 2.7 7.6 9.3 0.15 11.6 2.6 1.7 2 0 0 2 2 2 0 Vpu protein TMEM154 PF15102.1 gi|325969237|ref|YP_004245429.1| - 4.2 7.0 6.4 0.15 11.7 0.5 1.7 2 0 0 2 2 2 0 TMEM154 protein family Rifin_STEVOR PF02009.11 gi|325969237|ref|YP_004245429.1| - 5.1 6.6 8.1 8 6.0 5.6 1.2 1 0 0 1 1 1 0 Rifin/stevor family Chordopox_A13L PF05961.6 gi|325969237|ref|YP_004245429.1| - 5.6 6.9 8.8 0.63 10.0 1.0 2.6 3 0 0 3 3 3 0 Chordopoxvirus A13L protein Tad PF13400.1 gi|325969237|ref|YP_004245429.1| - 7.8 6.6 10.3 1.2 9.1 0.7 2.5 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Hist_deacetyl PF00850.14 gi|325969238|ref|YP_004245430.1| - 1.1e-88 297.5 0.0 1.4e-88 297.1 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Erp_C PF06780.6 gi|325969239|ref|YP_004245431.1| - 0.015 15.1 1.5 0.018 14.8 1.0 1.1 1 0 0 1 1 1 0 Erp protein C-terminus FbpA PF05833.6 gi|325969240|ref|YP_004245432.1| - 1.3e-39 136.0 0.3 1.6e-39 135.7 0.2 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|325969240|ref|YP_004245432.1| - 1.8e-23 82.1 0.0 3.7e-23 81.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Prefoldin_2 PF01920.15 gi|325969240|ref|YP_004245432.1| - 0.014 15.1 4.8 0.26 11.0 0.3 2.6 2 0 0 2 2 2 0 Prefoldin subunit Syntaxin PF00804.20 gi|325969240|ref|YP_004245432.1| - 0.036 14.2 1.9 2.9 8.0 0.2 2.4 2 0 0 2 2 2 0 Syntaxin APG17 PF04108.7 gi|325969240|ref|YP_004245432.1| - 0.047 12.4 2.3 1.5 7.4 0.0 2.3 2 0 0 2 2 2 0 Autophagy protein Apg17 TPR_MLP1_2 PF07926.7 gi|325969240|ref|YP_004245432.1| - 0.06 13.0 1.8 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Myosin_tail_1 PF01576.14 gi|325969240|ref|YP_004245432.1| - 0.071 10.8 2.9 0.53 7.9 0.1 2.0 2 0 0 2 2 2 0 Myosin tail DUF624 PF04854.9 gi|325969240|ref|YP_004245432.1| - 0.088 12.6 0.1 0.22 11.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function, DUF624 Tropomyosin_1 PF12718.2 gi|325969240|ref|YP_004245432.1| - 0.24 11.2 3.6 1.8 8.3 0.2 2.1 2 0 0 2 2 2 0 Tropomyosin like bZIP_1 PF00170.16 gi|325969240|ref|YP_004245432.1| - 0.45 10.5 5.0 0.82 9.6 1.1 2.4 2 0 0 2 2 2 0 bZIP transcription factor FlaC_arch PF05377.6 gi|325969240|ref|YP_004245432.1| - 0.58 10.1 7.4 4.1 7.3 0.7 2.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.4 gi|325969240|ref|YP_004245432.1| - 0.68 9.7 5.8 9 6.1 1.0 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GrpE PF01025.14 gi|325969240|ref|YP_004245432.1| - 1.2 8.6 4.2 7.9 5.9 0.2 2.7 2 0 0 2 2 2 0 GrpE IncA PF04156.9 gi|325969240|ref|YP_004245432.1| - 1.6 8.2 4.7 13 5.3 0.4 2.2 2 0 0 2 2 2 0 IncA protein APG6 PF04111.7 gi|325969240|ref|YP_004245432.1| - 1.6 7.7 5.5 2.1 7.3 0.7 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 CCDC155 PF14662.1 gi|325969240|ref|YP_004245432.1| - 1.9 8.0 6.1 7.7 6.0 0.5 2.2 2 0 0 2 2 2 0 Coiled-coil region of CCDC155 DUF4200 PF13863.1 gi|325969240|ref|YP_004245432.1| - 3.1 7.7 11.2 5.4 6.9 0.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Mut7-C PF01927.11 gi|325969241|ref|YP_004245433.1| - 3.2e-28 98.5 0.0 3.7e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DNA_ligase_ZBD PF03119.11 gi|325969241|ref|YP_004245433.1| - 0.012 15.2 0.1 0.024 14.3 0.1 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3268 PF11672.3 gi|325969241|ref|YP_004245433.1| - 0.076 13.0 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) ADK_lid PF05191.9 gi|325969241|ref|YP_004245433.1| - 0.11 12.1 1.2 8.3 6.1 0.2 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.7 gi|325969241|ref|YP_004245433.1| - 0.3 10.4 2.1 2.8 7.3 1.4 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding AMMECR1 PF01871.12 gi|325969242|ref|YP_004245434.1| - 3.8e-25 87.9 0.0 4.9e-25 87.6 0.0 1.2 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.1 gi|325969243|ref|YP_004245435.1| - 0.00027 20.6 0.4 0.00061 19.5 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_4 PF13462.1 gi|325969243|ref|YP_004245435.1| - 0.0073 16.3 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin DUF605 PF04652.11 gi|325969243|ref|YP_004245435.1| - 1.6 8.0 19.8 1.7 7.9 13.7 1.1 1 0 0 1 1 1 0 Vta1 like Ribosomal_L35Ae PF01247.13 gi|325969244|ref|YP_004245436.1| - 1.6e-08 34.1 0.0 2.6e-08 33.5 0.0 1.3 1 1 0 1 1 1 1 Ribosomal protein L35Ae V_ATPase_I PF01496.14 gi|325969245|ref|YP_004245437.1| - 3.4e-26 91.3 36.4 5.2e-24 84.1 23.8 4.2 2 1 0 2 2 2 1 V-type ATPase 116kDa subunit family Laminin_I PF06008.9 gi|325969245|ref|YP_004245437.1| - 0.0011 18.3 0.0 1.3 8.3 0.0 3.1 3 0 0 3 3 3 1 Laminin Domain I Reo_sigmaC PF04582.7 gi|325969245|ref|YP_004245437.1| - 0.012 14.7 0.1 3.3 6.8 0.0 2.3 2 0 0 2 2 2 0 Reovirus sigma C capsid protein TBPIP PF07106.8 gi|325969245|ref|YP_004245437.1| - 0.015 14.8 0.2 0.52 9.8 0.0 2.4 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Vac_Fusion PF02346.11 gi|325969245|ref|YP_004245437.1| - 0.023 14.1 0.6 5 6.6 0.1 3.4 3 0 0 3 3 3 0 Chordopoxvirus fusion protein GAS PF13851.1 gi|325969245|ref|YP_004245437.1| - 0.044 12.9 0.2 2 7.5 0.0 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF2730 PF10805.3 gi|325969245|ref|YP_004245437.1| - 0.091 12.4 0.3 1.8 8.3 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) IncA PF04156.9 gi|325969245|ref|YP_004245437.1| - 0.12 12.0 0.1 0.12 12.0 0.0 4.7 5 0 0 5 5 3 0 IncA protein Lipoprotein_7 PF01540.11 gi|325969245|ref|YP_004245437.1| - 0.14 11.1 1.0 0.56 9.2 0.3 1.9 2 0 0 2 2 2 0 Adhesin lipoprotein CCDC144C PF14915.1 gi|325969245|ref|YP_004245437.1| - 0.15 10.9 0.3 0.29 10.0 0.0 1.5 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region CALCOCO1 PF07888.6 gi|325969245|ref|YP_004245437.1| - 0.19 10.0 0.2 1.8 6.7 0.0 2.0 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like BLOC1_2 PF10046.4 gi|325969245|ref|YP_004245437.1| - 0.26 11.4 1.7 15 5.8 0.0 3.5 3 1 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DivIVA PF05103.8 gi|325969245|ref|YP_004245437.1| - 2.5 8.1 3.8 1.8 8.5 0.4 2.3 3 0 0 3 3 3 0 DivIVA protein CBS PF00571.23 gi|325969246|ref|YP_004245438.1| - 3e-33 113.3 10.5 3.2e-18 65.2 1.1 2.2 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.3 gi|325969246|ref|YP_004245438.1| - 0.014 15.0 1.6 0.78 9.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Robl_LC7 PF03259.12 gi|325969246|ref|YP_004245438.1| - 0.05 13.1 0.4 0.97 9.0 0.0 2.4 2 1 0 2 2 2 0 Roadblock/LC7 domain Ral PF11058.3 gi|325969246|ref|YP_004245438.1| - 0.055 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Antirestriction protein Ral DUF849 PF05853.7 gi|325969246|ref|YP_004245438.1| - 0.096 11.5 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) DUF1150 PF06620.6 gi|325969246|ref|YP_004245438.1| - 0.1 12.4 0.0 58 3.6 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1150) Cache_3 PF14827.1 gi|325969246|ref|YP_004245438.1| - 0.3 10.9 2.1 3.4 7.6 1.4 2.5 1 1 0 1 1 1 0 Sensory domain of two-component sensor kinase PRC PF05239.11 gi|325969246|ref|YP_004245438.1| - 0.39 10.5 5.2 2.5 8.0 0.0 3.4 3 1 0 3 3 3 0 PRC-barrel domain DUF2283 PF10049.4 gi|325969246|ref|YP_004245438.1| - 0.93 9.3 4.9 5.7 6.8 0.4 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) DUF340 PF03956.8 gi|325969247|ref|YP_004245439.1| - 4.1e-43 146.8 21.3 4.1e-43 146.8 14.8 2.1 2 0 0 2 2 2 2 Membrane protein of unknown function (DUF340) Rad51 PF08423.6 gi|325969248|ref|YP_004245440.1| - 3.2e-72 242.5 0.1 3.8e-72 242.2 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|325969248|ref|YP_004245440.1| - 8.4e-13 48.1 0.0 1.3e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|325969248|ref|YP_004245440.1| - 4.5e-10 39.0 0.1 7e-10 38.4 0.0 1.3 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|325969248|ref|YP_004245440.1| - 1.1e-09 38.3 0.1 2.8e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|325969248|ref|YP_004245440.1| - 4.6e-05 23.3 0.0 0.00019 21.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) HHH PF00633.18 gi|325969248|ref|YP_004245440.1| - 0.0006 19.3 0.0 0.0039 16.8 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|325969248|ref|YP_004245440.1| - 0.0052 16.6 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|325969248|ref|YP_004245440.1| - 0.064 13.3 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif TfoX_C PF04994.8 gi|325969248|ref|YP_004245440.1| - 0.067 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain AAA_18 PF13238.1 gi|325969248|ref|YP_004245440.1| - 0.073 13.3 0.1 0.18 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Sigma70_r3 PF04539.11 gi|325969248|ref|YP_004245440.1| - 0.093 12.6 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_15 PF12324.3 gi|325969248|ref|YP_004245440.1| - 0.095 12.3 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase AAA_24 PF13479.1 gi|325969248|ref|YP_004245440.1| - 0.098 12.2 0.9 0.41 10.1 0.6 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|325969248|ref|YP_004245440.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter TGS PF02824.16 gi|325969249|ref|YP_004245441.1| - 2.4e-17 62.5 0.0 5.1e-17 61.4 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|325969249|ref|YP_004245441.1| - 5.3e-11 42.5 0.0 1.4e-10 41.1 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|325969249|ref|YP_004245441.1| - 0.00033 19.9 0.1 0.0014 17.9 0.0 1.9 2 0 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|325969249|ref|YP_004245441.1| - 0.00042 20.8 0.0 0.00091 19.7 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|325969249|ref|YP_004245441.1| - 0.00068 19.1 0.1 2.6 7.4 0.0 3.2 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|325969249|ref|YP_004245441.1| - 0.0024 17.3 0.1 0.5 9.7 0.2 2.4 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|325969249|ref|YP_004245441.1| - 0.0028 17.5 0.1 0.056 13.2 0.0 2.3 2 0 0 2 2 2 1 Dynamin family ABC_tran PF00005.22 gi|325969249|ref|YP_004245441.1| - 0.011 16.0 0.1 0.067 13.4 0.0 2.1 1 1 1 2 2 2 0 ABC transporter AAA_28 PF13521.1 gi|325969249|ref|YP_004245441.1| - 0.013 15.4 0.0 0.047 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|325969249|ref|YP_004245441.1| - 0.025 14.5 0.0 0.063 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|325969249|ref|YP_004245441.1| - 0.032 14.2 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|325969249|ref|YP_004245441.1| - 0.038 13.6 0.4 0.091 12.4 0.0 1.9 2 1 0 2 2 2 0 Archaeal ATPase YchF-GTPase_C PF06071.8 gi|325969249|ref|YP_004245441.1| - 0.043 13.6 0.1 3.1 7.6 0.0 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF933) SRPRB PF09439.5 gi|325969249|ref|YP_004245441.1| - 0.07 12.3 0.0 0.22 10.7 0.0 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_14 PF13173.1 gi|325969249|ref|YP_004245441.1| - 0.076 12.9 0.0 0.33 10.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|325969249|ref|YP_004245441.1| - 0.097 12.2 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3954 PF13128.1 gi|325969249|ref|YP_004245441.1| - 0.2 11.1 4.3 4.5 6.7 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3954) OrfB_IS605 PF01385.14 gi|325969250|ref|YP_004245442.1| - 2.3e-13 50.0 0.0 2.8e-13 49.7 0.0 1.0 1 0 0 1 1 1 1 Probable transposase Mononeg_RNA_pol PF00946.14 gi|325969251|ref|YP_004245443.1| - 0.026 11.9 0.3 0.029 11.7 0.2 1.1 1 0 0 1 1 1 0 Mononegavirales RNA dependent RNA polymerase Rota_NSP4 PF01452.11 gi|325969251|ref|YP_004245443.1| - 0.18 11.1 3.7 0.53 9.6 0.6 2.3 1 1 0 2 2 2 0 Rotavirus non structural protein AAA PF00004.24 gi|325969252|ref|YP_004245444.1| - 7.2e-17 61.8 0.0 1.6e-16 60.6 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|325969252|ref|YP_004245444.1| - 4.8e-14 52.3 0.0 1.2e-09 38.0 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|325969252|ref|YP_004245444.1| - 1.3e-10 41.0 0.0 3.7e-10 39.6 0.0 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|325969252|ref|YP_004245444.1| - 1.4e-09 38.1 0.0 0.00094 19.3 0.0 2.7 1 1 1 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|325969252|ref|YP_004245444.1| - 1.2e-08 34.2 0.0 2e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|325969252|ref|YP_004245444.1| - 2.6e-08 33.0 0.0 0.00064 18.5 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|325969252|ref|YP_004245444.1| - 4e-08 33.1 0.0 7.7e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325969252|ref|YP_004245444.1| - 4.2e-07 30.1 0.0 0.0014 18.6 0.0 3.1 1 1 2 3 3 3 1 AAA ATPase domain AAA_25 PF13481.1 gi|325969252|ref|YP_004245444.1| - 2.3e-06 27.1 0.0 6.4e-06 25.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|325969252|ref|YP_004245444.1| - 3.3e-06 26.7 0.0 8.4e-06 25.4 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain Mg_chelatase PF01078.16 gi|325969252|ref|YP_004245444.1| - 1.8e-05 24.0 0.0 0.0003 20.0 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|325969252|ref|YP_004245444.1| - 2e-05 24.0 0.0 3.7e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|325969252|ref|YP_004245444.1| - 3.3e-05 24.1 0.0 0.00016 21.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|325969252|ref|YP_004245444.1| - 4.2e-05 22.4 0.0 0.0016 17.2 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus AAA_5 PF07728.9 gi|325969252|ref|YP_004245444.1| - 7.1e-05 22.5 0.1 0.00025 20.7 0.0 2.0 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|325969252|ref|YP_004245444.1| - 9e-05 21.7 0.0 0.045 12.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_3 PF07726.6 gi|325969252|ref|YP_004245444.1| - 0.00013 21.5 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|325969252|ref|YP_004245444.1| - 0.00028 21.6 0.0 0.00055 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|325969252|ref|YP_004245444.1| - 0.00076 19.1 0.0 0.0017 17.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|325969252|ref|YP_004245444.1| - 0.0027 17.3 0.0 0.01 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|325969252|ref|YP_004245444.1| - 0.0028 17.3 0.0 0.05 13.2 0.0 2.2 1 1 1 2 2 2 1 Archaeal ATPase PEPCK_ATP PF01293.15 gi|325969252|ref|YP_004245444.1| - 0.0038 15.8 0.0 0.0058 15.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase DEAD PF00270.24 gi|325969252|ref|YP_004245444.1| - 0.0046 16.4 0.1 0.19 11.1 0.0 2.5 2 1 1 3 3 3 1 DEAD/DEAH box helicase ArgK PF03308.11 gi|325969252|ref|YP_004245444.1| - 0.005 15.6 1.4 0.068 11.9 0.1 2.9 3 1 1 4 4 3 1 ArgK protein AAA_28 PF13521.1 gi|325969252|ref|YP_004245444.1| - 0.0051 16.7 0.0 0.014 15.3 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_10 PF12846.2 gi|325969252|ref|YP_004245444.1| - 0.007 15.8 0.3 0.29 10.5 0.0 2.5 2 1 1 3 3 3 1 AAA-like domain AAA_33 PF13671.1 gi|325969252|ref|YP_004245444.1| - 0.0084 15.9 0.0 0.021 14.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|325969252|ref|YP_004245444.1| - 0.0091 15.5 0.1 0.086 12.4 0.1 2.4 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|325969252|ref|YP_004245444.1| - 0.016 15.3 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.10 gi|325969252|ref|YP_004245444.1| - 0.02 14.7 0.0 0.1 12.3 0.0 1.9 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|325969252|ref|YP_004245444.1| - 0.024 13.5 0.0 0.12 11.3 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) T2SE PF00437.15 gi|325969252|ref|YP_004245444.1| - 0.032 13.1 0.0 0.086 11.7 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Viral_helicase1 PF01443.13 gi|325969252|ref|YP_004245444.1| - 0.042 13.3 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Sigma54_activat PF00158.21 gi|325969252|ref|YP_004245444.1| - 0.054 12.9 0.0 4.6 6.6 0.0 2.5 3 0 0 3 3 2 0 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|325969252|ref|YP_004245444.1| - 0.055 13.1 0.0 0.83 9.3 0.0 2.4 1 1 1 2 2 2 0 NTPase FtsK_SpoIIIE PF01580.13 gi|325969252|ref|YP_004245444.1| - 0.06 12.8 0.0 0.17 11.3 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family DNA_pol3_gamma3 PF12169.3 gi|325969252|ref|YP_004245444.1| - 0.068 12.9 0.3 0.91 9.2 0.0 2.6 3 0 0 3 3 2 0 DNA polymerase III subunits gamma and tau domain III DUF815 PF05673.8 gi|325969252|ref|YP_004245444.1| - 0.078 11.8 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MCM PF00493.18 gi|325969252|ref|YP_004245444.1| - 0.087 11.6 0.0 0.21 10.3 0.0 1.6 1 1 0 1 1 1 0 MCM2/3/5 family AAA_29 PF13555.1 gi|325969252|ref|YP_004245444.1| - 0.1 12.1 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Parvo_NS1 PF01057.12 gi|325969252|ref|YP_004245444.1| - 0.11 11.3 0.0 0.27 10.0 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 tRNA_lig_kinase PF08303.6 gi|325969252|ref|YP_004245444.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 tRNA ligase kinase domain NACHT PF05729.7 gi|325969252|ref|YP_004245444.1| - 0.15 11.7 0.0 1.3 8.6 0.0 2.1 1 1 0 1 1 1 0 NACHT domain NB-ARC PF00931.17 gi|325969252|ref|YP_004245444.1| - 0.16 10.8 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain TFIIB PF00382.14 gi|325969253|ref|YP_004245445.1| - 1e-36 124.5 2.9 1.9e-17 62.8 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|325969253|ref|YP_004245445.1| - 3.9e-17 61.3 0.3 6.2e-17 60.6 0.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|325969253|ref|YP_004245445.1| - 2.7e-05 23.7 0.3 0.014 14.9 0.1 2.3 2 0 0 2 2 2 2 Cyclin, N-terminal domain Ribosomal_S27e PF01667.12 gi|325969253|ref|YP_004245445.1| - 4.5e-05 22.9 1.2 8.9e-05 21.9 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Lar_restr_allev PF14354.1 gi|325969253|ref|YP_004245445.1| - 0.00063 19.9 0.3 0.0014 18.8 0.2 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar RRN7 PF11781.3 gi|325969253|ref|YP_004245445.1| - 0.0014 18.0 0.6 0.0025 17.2 0.4 1.4 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Sigma70_r4 PF04545.11 gi|325969253|ref|YP_004245445.1| - 0.0053 16.0 0.5 0.15 11.3 0.1 3.2 3 0 0 3 3 3 1 Sigma-70, region 4 Zn_Tnp_IS1595 PF12760.2 gi|325969253|ref|YP_004245445.1| - 0.017 14.8 1.5 0.4 10.5 1.5 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Cyclin_C PF02984.14 gi|325969253|ref|YP_004245445.1| - 0.051 13.4 0.3 8.1 6.4 0.0 2.7 3 0 0 3 3 3 0 Cyclin, C-terminal domain DUF1936 PF09151.5 gi|325969253|ref|YP_004245445.1| - 0.055 12.9 0.1 0.89 9.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Prim_Zn_Ribbon PF08273.7 gi|325969253|ref|YP_004245445.1| - 0.072 13.1 0.3 0.15 12.1 0.2 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.1 gi|325969253|ref|YP_004245445.1| - 0.076 12.5 2.1 5.1 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|325969253|ref|YP_004245445.1| - 0.077 12.8 0.2 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|325969253|ref|YP_004245445.1| - 0.13 11.4 4.2 0.58 9.4 3.0 1.9 1 1 0 1 1 1 0 zinc-ribbon domain HIT PF01230.18 gi|325969254|ref|YP_004245446.1| - 0.00027 21.4 0.0 0.00055 20.4 0.0 1.5 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|325969254|ref|YP_004245446.1| - 0.0073 15.9 0.8 0.013 15.1 0.4 1.6 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|325969254|ref|YP_004245446.1| - 0.0077 16.4 0.1 0.012 15.8 0.1 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding DUF2536 PF10750.4 gi|325969256|ref|YP_004245448.1| - 0.07 12.7 0.0 0.2 11.2 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) PalH PF08733.5 gi|325969258|ref|YP_004245450.1| - 2.5 6.8 13.8 2.9 6.6 9.5 1.2 1 0 0 1 1 1 0 PalH/RIM21 Peptidase_A24 PF01478.13 gi|325969258|ref|YP_004245450.1| - 3.1 7.9 13.6 4.5 7.4 9.4 1.3 1 0 0 1 1 1 0 Type IV leader peptidase family Ribosomal_L13e PF01294.13 gi|325969259|ref|YP_004245451.1| - 7.9e-09 35.2 0.7 1.7e-08 34.1 0.4 1.7 1 1 0 1 1 1 1 Ribosomal protein L13e Ribosomal_L15e PF00827.12 gi|325969259|ref|YP_004245451.1| - 6.8e-05 22.4 0.7 0.00012 21.6 0.5 1.4 1 0 0 1 1 1 1 Ribosomal L15 Phage_P2_GpE PF06528.7 gi|325969259|ref|YP_004245451.1| - 1.1 8.7 4.4 0.33 10.4 0.7 1.8 2 0 0 2 2 2 0 Phage P2 GpE HAD_2 PF13419.1 gi|325969260|ref|YP_004245452.1| - 3.2e-21 76.3 0.0 4e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|325969260|ref|YP_004245452.1| - 1.6e-06 28.7 0.0 1.6e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|325969260|ref|YP_004245452.1| - 0.015 15.1 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|325969260|ref|YP_004245452.1| - 0.02 14.5 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like RNA_binding PF01877.12 gi|325969261|ref|YP_004245453.1| - 1.4e-24 86.3 0.1 1.8e-24 86.0 0.1 1.1 1 0 0 1 1 1 1 RNA binding Pribosyltran_N PF13793.1 gi|325969262|ref|YP_004245454.1| - 1.4e-21 76.3 0.0 9.3e-19 67.2 0.0 2.3 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|325969262|ref|YP_004245454.1| - 1.3e-13 50.7 0.1 4.6e-13 48.9 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|325969262|ref|YP_004245454.1| - 3.2e-10 40.0 0.8 6.2e-10 39.1 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|325969262|ref|YP_004245454.1| - 5.4e-05 22.4 0.0 9.2e-05 21.7 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase T2SF PF00482.18 gi|325969263|ref|YP_004245455.1| - 4.2e-08 33.1 4.0 0.00019 21.3 0.0 3.9 3 1 0 3 3 3 2 Type II secretion system (T2SS), protein F Prok-RING_1 PF14446.1 gi|325969264|ref|YP_004245456.1| - 4.6e-05 23.0 10.7 6.5e-05 22.5 7.4 1.4 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|325969264|ref|YP_004245456.1| - 0.00077 19.1 9.0 0.044 13.5 0.8 3.1 3 0 0 3 3 3 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|325969264|ref|YP_004245456.1| - 0.0012 18.5 6.2 0.079 12.7 0.3 2.7 1 1 1 2 2 2 2 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|325969264|ref|YP_004245456.1| - 0.0016 17.8 3.5 0.0016 17.8 2.4 1.8 1 1 0 1 1 1 1 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|325969264|ref|YP_004245456.1| - 0.006 16.2 8.0 0.33 10.6 0.4 3.0 3 0 0 3 3 3 2 Nudix N-terminal zf-C3HC4_3 PF13920.1 gi|325969264|ref|YP_004245456.1| - 0.039 13.6 6.8 0.2 11.3 4.7 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) C1_1 PF00130.17 gi|325969264|ref|YP_004245456.1| - 0.059 13.1 5.3 0.07 12.8 3.7 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_5 PF14634.1 gi|325969264|ref|YP_004245456.1| - 0.068 12.9 7.2 0.24 11.1 5.0 1.8 1 1 0 1 1 1 0 zinc-RING finger domain zf-AN1 PF01428.11 gi|325969264|ref|YP_004245456.1| - 0.081 12.8 3.8 0.21 11.4 2.7 1.8 1 1 0 1 1 1 0 AN1-like Zinc finger HypA PF01155.14 gi|325969264|ref|YP_004245456.1| - 0.11 12.1 4.0 0.21 11.2 2.3 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PhnA_Zn_Ribbon PF08274.7 gi|325969264|ref|YP_004245456.1| - 0.14 11.9 5.5 1.3 8.8 0.0 2.7 3 1 0 3 3 3 0 PhnA Zinc-Ribbon C1_3 PF07649.7 gi|325969264|ref|YP_004245456.1| - 0.15 12.1 14.6 0.13 12.3 6.9 2.1 1 1 1 2 2 2 0 C1-like domain DUF4428 PF14471.1 gi|325969264|ref|YP_004245456.1| - 0.2 11.4 8.4 0.5 10.1 1.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) NinF PF05810.7 gi|325969264|ref|YP_004245456.1| - 0.35 10.7 1.9 1.2 9.0 1.3 1.8 1 1 0 1 1 1 0 NinF protein zf-RING_2 PF13639.1 gi|325969264|ref|YP_004245456.1| - 0.37 10.6 6.6 0.51 10.2 4.5 1.2 1 0 0 1 1 1 0 Ring finger domain UPF0547 PF10571.4 gi|325969264|ref|YP_004245456.1| - 0.38 10.4 8.4 1.6 8.5 0.2 3.3 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zf-P11 PF03854.9 gi|325969264|ref|YP_004245456.1| - 0.58 9.6 7.4 0.88 9.0 5.1 1.5 1 1 0 1 1 1 0 P-11 zinc finger zinc-ribbons_6 PF07191.7 gi|325969264|ref|YP_004245456.1| - 0.85 9.4 6.0 3.5 7.4 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.1 gi|325969264|ref|YP_004245456.1| - 0.86 8.8 12.6 8.6 5.7 5.7 3.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF1272 PF06906.6 gi|325969264|ref|YP_004245456.1| - 0.87 9.4 6.7 1.5 8.7 4.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|325969264|ref|YP_004245456.1| - 1 9.4 9.3 0.83 9.6 0.7 3.0 1 1 1 2 2 2 0 Zinc ribbon domain YdjO PF14169.1 gi|325969264|ref|YP_004245456.1| - 1.8 8.1 4.7 0.55 9.7 0.3 2.1 1 1 1 2 2 2 0 Cold-inducible protein YdjO zf-C3HC4 PF00097.20 gi|325969264|ref|YP_004245456.1| - 1.8 8.2 9.1 0.44 10.2 1.0 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|325969264|ref|YP_004245456.1| - 1.9 8.5 7.1 1.1 9.2 0.6 2.5 1 1 1 2 2 2 0 zinc-finger ADK_lid PF05191.9 gi|325969264|ref|YP_004245456.1| - 1.9 8.1 8.0 28 4.4 3.6 3.1 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-HIT PF04438.11 gi|325969264|ref|YP_004245456.1| - 2.1 8.0 17.3 10 5.8 6.9 3.1 1 1 1 2 2 2 0 HIT zinc finger C1_4 PF07975.7 gi|325969264|ref|YP_004245456.1| - 2.4 8.2 9.4 7.2 6.6 6.6 1.9 1 1 0 1 1 1 0 TFIIH C1-like domain DNA_RNApol_7kD PF03604.8 gi|325969264|ref|YP_004245456.1| - 2.7 7.5 12.3 3.2 7.3 0.7 3.1 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Rep_fac-A_C PF08646.5 gi|325969264|ref|YP_004245456.1| - 3.1 7.5 8.9 1.5 8.4 1.5 2.0 1 1 1 2 2 2 0 Replication factor-A C terminal domain DUF3039 PF11238.3 gi|325969264|ref|YP_004245456.1| - 3.2 7.2 8.1 20 4.7 5.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3039) zf-B_box PF00643.19 gi|325969264|ref|YP_004245456.1| - 3.9 7.4 8.2 3.5 7.6 0.3 2.1 1 1 1 2 2 2 0 B-box zinc finger zf-Mss51 PF13824.1 gi|325969264|ref|YP_004245456.1| - 5.4 6.9 9.6 0.55 10.1 0.6 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C3HC4_2 PF13923.1 gi|325969264|ref|YP_004245456.1| - 5.4 7.1 11.0 2.3 8.3 4.2 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|325969264|ref|YP_004245456.1| - 6.3 6.4 14.4 3 7.4 2.9 3.4 2 1 2 4 4 4 0 zinc-ribbon domain Carla_C4 PF01623.12 gi|325969264|ref|YP_004245456.1| - 9.5 6.0 9.4 21 4.9 6.5 1.6 1 1 0 1 1 1 0 Carlavirus putative nucleic acid binding protein T2SE PF00437.15 gi|325969268|ref|YP_004245460.1| - 3.3e-42 144.2 0.0 5e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|325969268|ref|YP_004245460.1| - 0.00023 21.4 0.0 0.00072 19.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|325969268|ref|YP_004245460.1| - 0.0012 19.6 0.0 0.0051 17.6 0.0 2.1 3 0 0 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|325969268|ref|YP_004245460.1| - 0.0027 16.8 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_14 PF13173.1 gi|325969268|ref|YP_004245460.1| - 0.0032 17.3 0.0 0.0086 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325969268|ref|YP_004245460.1| - 0.0033 16.9 0.3 0.014 14.8 0.1 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|325969268|ref|YP_004245460.1| - 0.0035 17.3 0.0 0.0063 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|325969268|ref|YP_004245460.1| - 0.0049 16.5 0.0 0.025 14.2 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_23 PF13476.1 gi|325969268|ref|YP_004245460.1| - 0.007 16.7 0.5 0.023 15.0 0.0 2.0 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.1 gi|325969268|ref|YP_004245460.1| - 0.01 15.9 0.0 0.028 14.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.10 gi|325969268|ref|YP_004245460.1| - 0.014 15.0 0.1 0.054 13.1 0.0 2.0 1 0 0 1 1 1 0 NTPase Dynamin_N PF00350.18 gi|325969268|ref|YP_004245460.1| - 0.017 14.9 0.0 0.063 13.0 0.0 1.9 2 0 0 2 2 2 0 Dynamin family AAA_15 PF13175.1 gi|325969268|ref|YP_004245460.1| - 0.018 14.0 0.2 0.039 12.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.22 gi|325969268|ref|YP_004245460.1| - 0.035 14.4 0.0 0.077 13.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.12 gi|325969268|ref|YP_004245460.1| - 0.037 12.9 0.0 0.077 11.8 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PduV-EutP PF10662.4 gi|325969268|ref|YP_004245460.1| - 0.046 13.2 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|325969268|ref|YP_004245460.1| - 0.049 13.3 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|325969268|ref|YP_004245460.1| - 0.067 13.0 0.0 0.4 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|325969268|ref|YP_004245460.1| - 0.11 12.2 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|325969268|ref|YP_004245460.1| - 0.13 11.6 0.0 0.33 10.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|325969268|ref|YP_004245460.1| - 0.15 12.0 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Lung_7-TM_R PF06814.8 gi|325969269|ref|YP_004245461.1| - 0.0062 15.5 0.3 0.0084 15.0 0.2 1.2 1 0 0 1 1 1 1 Lung seven transmembrane receptor UPF0182 PF03699.8 gi|325969269|ref|YP_004245461.1| - 0.014 13.3 1.7 0.018 13.0 1.2 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) CARDB PF07705.6 gi|325969269|ref|YP_004245461.1| - 0.014 15.3 2.5 0.019 14.9 1.7 1.2 1 0 0 1 1 1 0 CARDB DUF4425 PF14466.1 gi|325969269|ref|YP_004245461.1| - 0.03 14.4 1.2 0.046 13.8 0.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4425) NVEALA PF14055.1 gi|325969269|ref|YP_004245461.1| - 0.16 11.7 1.1 0.41 10.3 0.7 1.6 1 0 0 1 1 1 0 NVEALA protein DUF1628 PF07790.6 gi|325969269|ref|YP_004245461.1| - 1.3 9.8 7.8 0.77 10.5 2.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) Ribosomal_S5_C PF03719.10 gi|325969271|ref|YP_004245463.1| - 3.9e-24 83.7 0.1 7e-24 82.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|325969271|ref|YP_004245463.1| - 1.3e-21 76.1 4.3 2e-21 75.4 2.9 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.15 gi|325969272|ref|YP_004245464.1| - 5.4e-15 54.7 0.0 8.7e-15 54.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|325969273|ref|YP_004245465.1| - 9.5e-34 116.5 1.0 1.2e-33 116.2 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 TrmB PF01978.14 gi|325969273|ref|YP_004245465.1| - 0.044 13.4 0.0 0.097 12.3 0.0 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|325969273|ref|YP_004245465.1| - 0.094 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SecY PF00344.15 gi|325969274|ref|YP_004245466.1| - 1.8e-73 247.4 31.9 2.3e-73 247.1 22.1 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|325969274|ref|YP_004245466.1| - 0.00045 19.6 1.4 0.0012 18.2 0.9 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Methyltrn_RNA_3 PF02598.12 gi|325969276|ref|YP_004245468.1| - 1.6e-52 178.6 0.0 1.9e-52 178.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.17 gi|325969277|ref|YP_004245469.1| - 3.5e-59 200.3 0.0 4.1e-59 200.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|325969278|ref|YP_004245470.1| - 5.7e-40 136.7 0.1 6.6e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|325969279|ref|YP_004245471.1| - 5.2e-16 58.3 2.9 8.5e-16 57.6 2.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 eIF-6 PF01912.13 gi|325969279|ref|YP_004245471.1| - 0.012 14.7 0.2 0.014 14.4 0.1 1.1 1 0 0 1 1 1 0 eIF-6 family NAD_binding_7 PF13241.1 gi|325969279|ref|YP_004245471.1| - 0.063 13.5 0.1 0.069 13.4 0.1 1.0 1 0 0 1 1 1 0 Putative NAD(P)-binding Nucleocap_ssRNA PF11128.3 gi|325969279|ref|YP_004245471.1| - 0.068 12.6 0.1 0.08 12.4 0.0 1.0 1 0 0 1 1 1 0 Plant viral coat protein nucleocapsid eIF3_N PF09440.5 gi|325969279|ref|YP_004245471.1| - 0.087 12.9 0.1 0.11 12.5 0.1 1.2 1 0 0 1 1 1 0 eIF3 subunit 6 N terminal domain DUF1447 PF07288.6 gi|325969279|ref|YP_004245471.1| - 0.1 12.3 1.3 0.13 12.0 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1447) DUF45 PF01863.12 gi|325969279|ref|YP_004245471.1| - 0.12 12.1 0.1 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF45 HTH_33 PF13592.1 gi|325969279|ref|YP_004245471.1| - 0.13 11.8 0.1 0.67 9.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix Sds3 PF08598.6 gi|325969280|ref|YP_004245472.1| - 0.055 12.9 4.2 0.065 12.7 2.9 1.1 1 0 0 1 1 1 0 Sds3-like Peptidase_C3 PF00548.15 gi|325969280|ref|YP_004245472.1| - 0.078 12.7 0.0 0.11 12.2 0.0 1.3 1 1 0 1 1 1 0 3C cysteine protease (picornain 3C) NAD_binding_7 PF13241.1 gi|325969280|ref|YP_004245472.1| - 0.11 12.8 0.1 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Hepatitis_core PF00906.15 gi|325969280|ref|YP_004245472.1| - 7.5 6.1 10.1 10 5.6 7.0 1.4 1 0 0 1 1 1 0 Hepatitis core antigen Thioredoxin_3 PF13192.1 gi|325969281|ref|YP_004245473.1| - 2.3e-15 56.1 1.5 2.3e-09 36.9 0.3 2.8 3 0 0 3 3 3 2 Thioredoxin domain Thioredoxin PF00085.15 gi|325969281|ref|YP_004245473.1| - 1.3e-08 34.4 0.1 4.6e-05 23.0 0.0 2.6 2 1 0 2 2 2 2 Thioredoxin Thioredoxin_9 PF14595.1 gi|325969281|ref|YP_004245473.1| - 0.00043 19.8 0.0 0.24 10.9 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|325969281|ref|YP_004245473.1| - 0.0005 20.2 1.4 0.38 10.9 0.6 3.1 2 1 0 2 2 2 1 Thioredoxin-like domain RNA_pol_Rpb5_C PF01191.14 gi|325969281|ref|YP_004245473.1| - 0.012 15.2 0.0 0.034 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain Thioredoxin_8 PF13905.1 gi|325969281|ref|YP_004245473.1| - 0.014 15.4 0.5 2.2 8.4 0.0 3.4 2 2 1 3 3 3 0 Thioredoxin-like TrbC_Ftype PF09673.5 gi|325969281|ref|YP_004245473.1| - 0.049 13.2 0.0 0.65 9.6 0.0 2.3 2 0 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein Glutaredoxin PF00462.19 gi|325969281|ref|YP_004245473.1| - 1.3 9.0 7.3 1.4 8.9 0.3 3.7 4 2 0 4 4 4 0 Glutaredoxin Ham1p_like PF01725.11 gi|325969282|ref|YP_004245474.1| - 2.1e-47 160.9 0.0 2.4e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Ham1 family DBB PF14545.1 gi|325969283|ref|YP_004245475.1| - 0.28 10.6 6.3 0.28 10.7 0.3 2.3 1 1 1 2 2 2 0 Dof, BCAP, and BANK (DBB) motif, zf-ribbon_3 PF13248.1 gi|325969284|ref|YP_004245476.1| - 0.00011 21.2 2.5 0.00022 20.3 1.7 1.5 1 1 0 1 1 1 1 zinc-ribbon domain RRN7 PF11781.3 gi|325969284|ref|YP_004245476.1| - 0.00031 20.1 0.1 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_2 PF13240.1 gi|325969284|ref|YP_004245476.1| - 0.0061 16.0 2.6 0.085 12.3 0.3 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|325969284|ref|YP_004245476.1| - 0.0075 16.0 0.3 0.011 15.5 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|325969284|ref|YP_004245476.1| - 0.013 15.3 0.2 0.016 15.0 0.2 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.6 gi|325969284|ref|YP_004245476.1| - 0.015 14.9 0.2 0.02 14.5 0.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Herpes_UL49_1 PF03117.9 gi|325969284|ref|YP_004245476.1| - 0.028 13.4 1.8 0.57 9.2 0.0 2.0 1 1 1 2 2 2 0 UL49 family Auto_anti-p27 PF06677.7 gi|325969284|ref|YP_004245476.1| - 0.04 13.6 1.5 0.067 12.9 0.9 1.5 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) C1_1 PF00130.17 gi|325969284|ref|YP_004245476.1| - 0.075 12.7 0.3 9.3 6.0 0.1 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_recom PF13408.1 gi|325969284|ref|YP_004245476.1| - 0.077 13.2 1.3 3.4 8.0 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Nudix_N_2 PF14803.1 gi|325969284|ref|YP_004245476.1| - 0.1 12.3 1.1 8 6.2 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_4 PF13717.1 gi|325969284|ref|YP_004245476.1| - 0.11 12.2 0.5 1 9.1 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|325969284|ref|YP_004245476.1| - 0.11 11.9 1.7 0.83 9.1 1.3 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|325969284|ref|YP_004245476.1| - 0.12 12.0 0.4 1 9.0 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|325969284|ref|YP_004245476.1| - 0.4 10.0 3.0 2.2 7.6 2.1 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding DUF678 PF05077.7 gi|325969284|ref|YP_004245476.1| - 0.77 9.7 3.2 0.82 9.7 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF678) Desulfoferrod_N PF06397.7 gi|325969284|ref|YP_004245476.1| - 1.3 8.4 3.9 14 5.1 3.0 2.0 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain DEAD PF00270.24 gi|325969285|ref|YP_004245477.1| - 2.3e-31 108.5 0.0 2.1e-30 105.4 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|325969285|ref|YP_004245477.1| - 1.5e-29 103.0 0.1 4.3e-29 101.5 0.1 1.9 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|325969285|ref|YP_004245477.1| - 2.3e-15 56.2 0.1 3.9e-14 52.2 0.1 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|325969285|ref|YP_004245477.1| - 2.6e-08 33.8 0.0 6.2e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|325969285|ref|YP_004245477.1| - 0.024 13.4 0.0 0.04 12.7 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain HypA PF01155.14 gi|325969285|ref|YP_004245477.1| - 0.036 13.7 0.1 0.086 12.5 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family AAA_10 PF12846.2 gi|325969285|ref|YP_004245477.1| - 0.14 11.5 0.1 21 4.4 0.0 2.6 2 0 0 2 2 2 0 AAA-like domain Zn_Tnp_IS1595 PF12760.2 gi|325969285|ref|YP_004245477.1| - 0.58 10.0 3.5 0.56 10.0 0.4 2.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|325969285|ref|YP_004245477.1| - 0.62 9.3 2.4 1.9 7.8 1.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain CYTH PF01928.16 gi|325969286|ref|YP_004245478.1| - 2.5e-38 131.6 3.5 3e-38 131.3 2.4 1.0 1 0 0 1 1 1 1 CYTH domain PRANC PF09372.5 gi|325969286|ref|YP_004245478.1| - 0.067 13.1 0.2 0.19 11.7 0.1 1.8 1 0 0 1 1 1 0 PRANC domain AA_permease_2 PF13520.1 gi|325969287|ref|YP_004245479.1| - 1e-23 83.5 76.1 1.3e-23 83.2 52.8 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|325969287|ref|YP_004245479.1| - 0.02 13.2 67.2 0.03 12.6 46.6 1.2 1 0 0 1 1 1 0 Amino acid permease Lysis_S PF04971.7 gi|325969287|ref|YP_004245479.1| - 8.1 6.2 17.5 5.7 6.6 0.9 4.5 3 1 1 4 4 4 0 Lysis protein S SBP_bac_11 PF13531.1 gi|325969288|ref|YP_004245480.1| - 1.4e-29 103.4 0.5 1.9e-29 102.9 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|325969289|ref|YP_004245481.1| - 2.5e-17 63.0 21.8 2.5e-17 63.0 15.1 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|325969290|ref|YP_004245482.1| - 1.6e-31 109.4 0.0 2.2e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325969290|ref|YP_004245482.1| - 9e-10 38.9 0.0 8.1e-05 22.7 0.0 2.4 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325969290|ref|YP_004245482.1| - 2e-05 23.9 0.0 0.00017 20.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.5 gi|325969290|ref|YP_004245482.1| - 0.00017 21.5 0.1 0.00073 19.4 0.1 2.2 1 1 0 1 1 1 1 TOBE domain AAA_10 PF12846.2 gi|325969290|ref|YP_004245482.1| - 0.00091 18.7 0.4 0.0056 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|325969290|ref|YP_004245482.1| - 0.0014 18.5 0.1 0.012 15.5 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit T2SE PF00437.15 gi|325969290|ref|YP_004245482.1| - 0.003 16.5 0.0 0.0047 15.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_19 PF13245.1 gi|325969290|ref|YP_004245482.1| - 0.0058 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|325969290|ref|YP_004245482.1| - 0.0066 17.2 0.5 0.023 15.5 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|325969290|ref|YP_004245482.1| - 0.007 16.7 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325969290|ref|YP_004245482.1| - 0.0078 15.7 0.1 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|325969290|ref|YP_004245482.1| - 0.011 14.9 0.0 0.017 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|325969290|ref|YP_004245482.1| - 0.014 15.5 0.7 0.12 12.4 0.5 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|325969290|ref|YP_004245482.1| - 0.017 14.7 0.0 0.036 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|325969290|ref|YP_004245482.1| - 0.02 14.7 0.2 0.036 13.8 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 TOBE PF03459.12 gi|325969290|ref|YP_004245482.1| - 0.023 14.8 0.0 0.14 12.2 0.0 2.3 2 0 0 2 2 2 0 TOBE domain TrkA_C PF02080.16 gi|325969290|ref|YP_004245482.1| - 0.023 14.3 0.1 5.1 6.7 0.0 2.6 2 0 0 2 2 2 0 TrkA-C domain AAA_33 PF13671.1 gi|325969290|ref|YP_004245482.1| - 0.023 14.5 0.1 0.15 11.8 0.0 2.3 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|325969290|ref|YP_004245482.1| - 0.023 14.3 0.1 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_16 PF13191.1 gi|325969290|ref|YP_004245482.1| - 0.029 14.3 0.0 0.061 13.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.24 gi|325969290|ref|YP_004245482.1| - 0.038 14.1 0.1 0.44 10.7 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|325969290|ref|YP_004245482.1| - 0.042 12.3 0.0 0.088 11.2 0.0 1.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|325969290|ref|YP_004245482.1| - 0.054 12.8 0.0 0.64 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|325969290|ref|YP_004245482.1| - 0.071 13.4 0.1 0.17 12.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|325969290|ref|YP_004245482.1| - 0.12 12.0 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Malic_M PF03949.10 gi|325969291|ref|YP_004245483.1| - 7.2e-67 225.6 0.4 9.2e-67 225.2 0.3 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|325969291|ref|YP_004245483.1| - 2.1e-24 86.0 0.0 3.3e-21 75.6 0.0 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain UPF0147 PF03685.8 gi|325969292|ref|YP_004245484.1| - 4.2e-31 106.6 0.1 4.8e-31 106.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) TFIIB PF00382.14 gi|325969292|ref|YP_004245484.1| - 0.12 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Transcription factor TFIIB repeat HTH_24 PF13412.1 gi|325969293|ref|YP_004245485.1| - 1.5e-14 53.0 1.8 1.5e-14 53.0 1.3 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|325969293|ref|YP_004245485.1| - 2.7e-12 46.0 0.1 2.7e-12 46.0 0.1 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|325969293|ref|YP_004245485.1| - 1.8e-11 43.6 0.1 2.8e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|325969293|ref|YP_004245485.1| - 3.4e-08 33.0 0.6 3.4e-08 33.0 0.4 1.9 2 1 0 2 2 1 1 HTH domain HTH_20 PF12840.2 gi|325969293|ref|YP_004245485.1| - 8e-07 28.7 0.0 1.8e-06 27.6 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.17 gi|325969293|ref|YP_004245485.1| - 8.8e-06 25.3 0.7 1.7e-05 24.4 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_30 PF13556.1 gi|325969293|ref|YP_004245485.1| - 5.8e-05 22.5 0.0 9.4e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TrmB PF01978.14 gi|325969293|ref|YP_004245485.1| - 0.00015 21.3 0.3 0.00036 20.1 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|325969293|ref|YP_004245485.1| - 0.0002 20.9 1.0 0.00027 20.5 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|325969293|ref|YP_004245485.1| - 0.00022 21.1 0.0 0.00037 20.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|325969293|ref|YP_004245485.1| - 0.00023 20.6 0.1 0.00046 19.6 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.6 gi|325969293|ref|YP_004245485.1| - 0.00024 20.8 1.9 0.0004 20.0 1.4 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR_2 PF12802.2 gi|325969293|ref|YP_004245485.1| - 0.00027 20.5 0.0 0.00047 19.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|325969293|ref|YP_004245485.1| - 0.00033 20.1 0.0 0.0012 18.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|325969293|ref|YP_004245485.1| - 0.00033 20.1 0.0 0.0006 19.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.7 gi|325969293|ref|YP_004245485.1| - 0.00055 19.4 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_17 PF12728.2 gi|325969293|ref|YP_004245485.1| - 0.0015 18.7 0.0 0.0031 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_WhiA PF02650.9 gi|325969293|ref|YP_004245485.1| - 0.0017 18.7 0.3 0.0045 17.3 0.0 1.8 2 0 0 2 2 1 1 WhiA C-terminal HTH domain Mga PF05043.8 gi|325969293|ref|YP_004245485.1| - 0.0021 18.3 0.2 0.0043 17.2 0.1 1.5 2 0 0 2 2 1 1 Mga helix-turn-helix domain HTH_36 PF13730.1 gi|325969293|ref|YP_004245485.1| - 0.0038 17.3 0.1 0.0066 16.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.14 gi|325969293|ref|YP_004245485.1| - 0.0038 16.7 0.3 0.0093 15.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_27 PF13463.1 gi|325969293|ref|YP_004245485.1| - 0.0042 17.3 0.1 0.017 15.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|325969293|ref|YP_004245485.1| - 0.0053 16.5 0.0 0.0097 15.7 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_38 PF13936.1 gi|325969293|ref|YP_004245485.1| - 0.0059 16.1 0.1 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DDRGK PF09756.4 gi|325969293|ref|YP_004245485.1| - 0.0089 15.4 0.2 0.014 14.8 0.1 1.3 1 0 0 1 1 1 1 DDRGK domain HTH_19 PF12844.2 gi|325969293|ref|YP_004245485.1| - 0.0099 15.9 0.2 0.036 14.1 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|325969293|ref|YP_004245485.1| - 0.023 14.3 0.1 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Transposase HTH_22 PF13309.1 gi|325969293|ref|YP_004245485.1| - 0.023 14.4 0.0 0.066 12.9 0.0 1.9 1 0 0 1 1 1 0 HTH domain TFIIE_alpha PF02002.12 gi|325969293|ref|YP_004245485.1| - 0.029 13.8 0.5 0.082 12.4 0.1 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|325969293|ref|YP_004245485.1| - 0.029 14.1 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|325969293|ref|YP_004245485.1| - 0.036 13.9 0.0 0.099 12.5 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain FUR PF01475.14 gi|325969293|ref|YP_004245485.1| - 0.041 13.8 0.1 0.12 12.3 0.0 1.8 2 0 0 2 2 2 0 Ferric uptake regulator family HTH_34 PF13601.1 gi|325969293|ref|YP_004245485.1| - 0.049 13.6 0.0 0.089 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain UPF0122 PF04297.9 gi|325969293|ref|YP_004245485.1| - 0.052 13.5 0.2 0.097 12.7 0.0 1.5 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_Tnp_Tc3_2 PF01498.13 gi|325969293|ref|YP_004245485.1| - 0.066 13.2 0.1 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Transposase SpoIIID PF12116.3 gi|325969293|ref|YP_004245485.1| - 0.079 12.8 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Stage III sporulation protein D HTH_6 PF01418.12 gi|325969293|ref|YP_004245485.1| - 0.083 12.6 0.0 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family NUMOD1 PF07453.8 gi|325969293|ref|YP_004245485.1| - 0.084 12.7 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 NUMOD1 domain HTH_1 PF00126.22 gi|325969293|ref|YP_004245485.1| - 0.087 12.5 0.0 0.2 11.3 0.0 1.5 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_4 PF13613.1 gi|325969293|ref|YP_004245485.1| - 0.14 11.6 0.0 0.54 9.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease DNA_pol_B PF00136.16 gi|325969294|ref|YP_004245486.1| - 2.1e-89 300.4 0.1 2.8e-89 300.0 0.1 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|325969294|ref|YP_004245486.1| - 9e-39 133.2 0.4 6.8e-38 130.3 0.3 2.2 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|325969294|ref|YP_004245486.1| - 9e-14 51.6 0.0 1.6e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|325969294|ref|YP_004245486.1| - 2.9e-11 43.3 0.0 5.5e-11 42.4 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.8 gi|325969294|ref|YP_004245486.1| - 0.032 12.8 0.3 0.31 9.6 0.1 2.2 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral RPN7 PF10602.4 gi|325969294|ref|YP_004245486.1| - 0.034 13.5 0.1 0.065 12.6 0.1 1.4 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Toprim_4 PF13662.1 gi|325969295|ref|YP_004245487.1| - 6.5e-07 29.2 0.1 1.6e-06 27.9 0.1 1.8 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|325969295|ref|YP_004245487.1| - 0.0028 17.6 0.2 0.014 15.3 0.0 2.4 1 1 1 2 2 2 1 Toprim domain Suf PF05843.9 gi|325969295|ref|YP_004245487.1| - 0.2 11.3 4.6 0.35 10.5 3.2 1.4 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) Vps39_2 PF10367.4 gi|325969295|ref|YP_004245487.1| - 0.23 11.6 1.7 0.75 10.0 1.2 1.9 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 PAT1 PF09770.4 gi|325969295|ref|YP_004245487.1| - 1.7 6.7 19.0 2.4 6.2 13.2 1.1 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 Ribosomal_L30_N PF08079.7 gi|325969295|ref|YP_004245487.1| - 2 8.5 9.6 2.1 8.4 1.5 2.4 2 0 0 2 2 2 0 Ribosomal L30 N-terminal domain DUF3484 PF11983.3 gi|325969295|ref|YP_004245487.1| - 3.5 8.5 19.2 26 5.7 0.0 3.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3484) Peptidase_M24 PF00557.19 gi|325969296|ref|YP_004245488.1| - 1e-41 142.8 0.0 1.2e-41 142.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Prenyltransf PF01255.14 gi|325969297|ref|YP_004245489.1| - 2.8e-75 252.3 0.1 3.1e-75 252.1 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF402 PF04167.8 gi|325969297|ref|YP_004245489.1| - 0.04 13.7 1.1 0.21 11.4 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF402) DUF4518 PF15008.1 gi|325969297|ref|YP_004245489.1| - 0.1 11.6 0.1 0.18 10.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4518) Epimerase PF01370.16 gi|325969298|ref|YP_004245490.1| - 6.2e-20 71.6 0.0 1.1e-19 70.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|325969298|ref|YP_004245490.1| - 0.00021 20.2 0.0 0.0005 19.0 0.0 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|325969298|ref|YP_004245490.1| - 0.00061 18.7 0.0 0.001 18.0 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|325969298|ref|YP_004245490.1| - 0.029 14.0 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 KR domain tRNA-Thr_ED PF08915.6 gi|325969299|ref|YP_004245491.1| - 7.3e-49 165.2 0.0 1.3e-48 164.4 0.0 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|325969299|ref|YP_004245491.1| - 7.1e-21 73.9 1.3 1.7e-20 72.7 0.4 2.1 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|325969299|ref|YP_004245491.1| - 6.9e-16 58.3 1.1 2e-15 56.8 0.8 1.8 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) INT_SG_DDX_CT_C PF15300.1 gi|325969299|ref|YP_004245491.1| - 0.064 12.7 0.2 0.28 10.6 0.0 2.2 2 0 0 2 2 2 0 INTS6/SAGE1/DDX26B/CT45 C-terminus DUF981 PF06168.6 gi|325969300|ref|YP_004245492.1| - 2.8e-45 154.4 14.4 4.7e-45 153.7 10.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF981) DUF650 PF04894.7 gi|325969301|ref|YP_004245493.1| - 2e-77 260.3 0.0 2.6e-77 259.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|325969301|ref|YP_004245493.1| - 8.2e-31 105.8 0.1 1e-28 99.1 0.0 2.3 2 0 0 2 2 2 2 Archaeal protein of unknown function (DUF651) UbiA PF01040.13 gi|325969302|ref|YP_004245494.1| - 7.7e-26 90.8 29.7 9.7e-26 90.5 20.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Bac_export_3 PF01313.14 gi|325969302|ref|YP_004245494.1| - 0.45 10.2 0.1 0.45 10.2 0.0 3.6 5 0 0 5 5 5 0 Bacterial export proteins, family 3 DUF87 PF01935.12 gi|325969303|ref|YP_004245495.1| - 2.4e-36 125.7 0.0 3.5e-36 125.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|325969303|ref|YP_004245495.1| - 9.7e-20 71.2 0.0 3.6e-11 43.0 0.0 2.9 2 1 0 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|325969303|ref|YP_004245495.1| - 0.0002 19.8 0.0 0.021 13.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|325969303|ref|YP_004245495.1| - 0.00024 20.6 0.0 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|325969303|ref|YP_004245495.1| - 0.017 14.5 0.0 0.044 13.2 0.0 1.7 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|325969303|ref|YP_004245495.1| - 0.048 12.2 0.0 0.22 10.1 0.0 2.0 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain ACP_syn_III_C PF08541.5 gi|325969303|ref|YP_004245495.1| - 0.13 12.2 0.1 3.1 7.8 0.1 3.0 2 1 1 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TGT PF01702.13 gi|325969304|ref|YP_004245496.1| - 0.0096 15.2 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF964 PF06133.6 gi|325969305|ref|YP_004245497.1| - 0.068 13.1 0.0 0.097 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF964) DUF2848 PF11010.3 gi|325969306|ref|YP_004245498.1| - 2.1e-62 210.0 0.0 2.6e-62 209.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2848) HrcA PF01628.16 gi|325969306|ref|YP_004245498.1| - 0.15 11.6 0.1 3.4 7.1 0.0 2.1 1 1 1 2 2 2 0 HrcA protein C terminal domain Apc4_WD40 PF12894.2 gi|325969307|ref|YP_004245499.1| - 0.0036 16.7 0.0 0.007 15.8 0.0 1.5 1 0 0 1 1 1 1 Anaphase-promoting complex subunit 4 WD40 domain Ribosomal_L37ae PF01780.14 gi|325969308|ref|YP_004245500.1| - 2.9e-31 107.1 3.8 3e-31 107.1 2.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family UPF0547 PF10571.4 gi|325969308|ref|YP_004245500.1| - 8.5e-05 22.1 1.2 0.0002 20.9 0.8 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|325969308|ref|YP_004245500.1| - 0.0015 18.3 3.2 0.0025 17.5 2.2 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain IBR PF01485.16 gi|325969308|ref|YP_004245500.1| - 0.0067 16.2 0.2 0.0096 15.7 0.1 1.2 1 0 0 1 1 1 1 IBR domain HypA PF01155.14 gi|325969308|ref|YP_004245500.1| - 0.007 16.0 0.1 0.0095 15.6 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-H2C2_2 PF13465.1 gi|325969308|ref|YP_004245500.1| - 0.0085 16.3 0.8 0.18 12.1 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|325969308|ref|YP_004245500.1| - 0.0086 15.7 0.6 0.013 15.1 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ISL3 PF14690.1 gi|325969308|ref|YP_004245500.1| - 0.013 15.4 1.7 3.2 7.8 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|325969308|ref|YP_004245500.1| - 0.018 14.9 2.2 1.9 8.5 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|325969308|ref|YP_004245500.1| - 0.028 13.6 3.4 0.065 12.4 2.4 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-C2H2_4 PF13894.1 gi|325969308|ref|YP_004245500.1| - 0.036 14.3 2.3 0.7 10.3 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.1 gi|325969308|ref|YP_004245500.1| - 0.055 13.0 3.9 1.1 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.17 gi|325969308|ref|YP_004245500.1| - 0.056 13.1 1.2 0.083 12.6 0.8 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-HIT PF04438.11 gi|325969308|ref|YP_004245500.1| - 0.058 13.0 1.5 7.2 6.3 0.2 2.2 2 0 0 2 2 2 0 HIT zinc finger zf-LITAF-like PF10601.4 gi|325969308|ref|YP_004245500.1| - 0.062 13.1 0.5 0.61 9.9 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF2225 PF09986.4 gi|325969308|ref|YP_004245500.1| - 0.064 12.7 0.4 0.092 12.1 0.3 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) Rubredoxin PF00301.15 gi|325969308|ref|YP_004245500.1| - 0.074 12.9 3.3 0.99 9.3 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|325969308|ref|YP_004245500.1| - 0.08 12.1 2.8 0.91 8.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rep_fac-A_C PF08646.5 gi|325969308|ref|YP_004245500.1| - 0.11 12.2 1.0 0.45 10.2 0.8 1.8 1 1 0 1 1 1 0 Replication factor-A C terminal domain zinc_ribbon_4 PF13717.1 gi|325969308|ref|YP_004245500.1| - 0.13 11.9 4.5 1.5 8.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|325969308|ref|YP_004245500.1| - 0.14 12.0 2.1 2.1 8.2 1.3 2.0 1 1 1 2 2 2 0 Double zinc ribbon DUF1610 PF07754.6 gi|325969308|ref|YP_004245500.1| - 0.21 11.7 2.7 1.2 9.3 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RING_4 PF14570.1 gi|325969308|ref|YP_004245500.1| - 0.22 11.1 1.7 2.3 7.8 0.1 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zinc_ribbon_2 PF13240.1 gi|325969308|ref|YP_004245500.1| - 0.24 10.9 5.5 1.1 8.8 3.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-tcix PF14952.1 gi|325969308|ref|YP_004245500.1| - 0.29 10.4 0.2 0.29 10.4 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.13 gi|325969308|ref|YP_004245500.1| - 0.47 9.5 2.5 1 8.5 0.1 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Nudix_N_2 PF14803.1 gi|325969308|ref|YP_004245500.1| - 0.54 9.9 3.4 3.5 7.3 0.3 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2 PF00096.21 gi|325969308|ref|YP_004245500.1| - 0.61 10.5 3.6 1.3 9.4 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF4379 PF14311.1 gi|325969308|ref|YP_004245500.1| - 0.71 9.7 3.8 1.8 8.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) DUF2296 PF10058.4 gi|325969308|ref|YP_004245500.1| - 0.84 9.4 3.8 19 5.0 2.7 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-MIZ PF02891.15 gi|325969308|ref|YP_004245500.1| - 1.3 8.6 4.3 41 3.8 0.1 2.3 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger TF_Zn_Ribbon PF08271.7 gi|325969308|ref|YP_004245500.1| - 2.4 7.5 4.7 45 3.4 3.3 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Brix PF04427.13 gi|325969309|ref|YP_004245501.1| - 4.6e-08 32.9 0.0 5.2e-08 32.7 0.0 1.2 1 1 0 1 1 1 1 Brix domain Pcc1 PF09341.5 gi|325969310|ref|YP_004245502.1| - 1.9e-06 27.8 0.2 1.9e-06 27.8 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|325969311|ref|YP_004245503.1| - 3e-22 78.3 16.6 3.4e-22 78.1 11.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF3584 PF12128.3 gi|325969311|ref|YP_004245503.1| - 0.00036 18.0 7.6 0.00043 17.7 5.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CENP-F_leu_zip PF10473.4 gi|325969311|ref|YP_004245503.1| - 0.0007 19.4 11.9 0.016 15.0 1.4 2.1 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Enkurin PF13864.1 gi|325969311|ref|YP_004245503.1| - 0.00079 19.5 0.7 0.00079 19.5 0.5 2.4 2 1 0 2 2 2 1 Calmodulin-binding DMPK_coil PF08826.5 gi|325969311|ref|YP_004245503.1| - 0.0028 17.5 5.0 0.0028 17.5 3.5 2.7 2 1 0 2 2 2 1 DMPK coiled coil domain like MscS_porin PF12795.2 gi|325969311|ref|YP_004245503.1| - 0.0032 16.8 11.6 0.084 12.1 0.7 2.0 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain Filament PF00038.16 gi|325969311|ref|YP_004245503.1| - 0.0074 15.8 7.6 0.33 10.3 0.8 2.0 2 0 0 2 2 2 2 Intermediate filament protein Tropomyosin_1 PF12718.2 gi|325969311|ref|YP_004245503.1| - 0.0094 15.8 13.7 0.057 13.2 1.6 2.1 2 0 0 2 2 2 1 Tropomyosin like NTR2 PF15458.1 gi|325969311|ref|YP_004245503.1| - 0.012 14.9 2.9 0.012 14.9 2.0 2.0 2 0 0 2 2 2 0 Nineteen complex-related protein 2 Prefoldin PF02996.12 gi|325969311|ref|YP_004245503.1| - 0.02 14.5 12.4 0.13 11.9 2.0 2.5 1 1 1 2 2 2 0 Prefoldin subunit PAF-AH_p_II PF03403.8 gi|325969311|ref|YP_004245503.1| - 0.026 12.8 0.6 0.031 12.5 0.4 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II TMCO5 PF14992.1 gi|325969311|ref|YP_004245503.1| - 0.028 13.5 8.2 0.036 13.1 5.7 1.1 1 0 0 1 1 1 0 TMCO5 family DUF832 PF05734.6 gi|325969311|ref|YP_004245503.1| - 0.035 13.3 1.0 0.041 13.0 0.7 1.1 1 0 0 1 1 1 0 Herpesvirus protein of unknown function (DUF832) Spc7 PF08317.6 gi|325969311|ref|YP_004245503.1| - 0.036 12.7 14.8 1.2 7.7 10.6 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein Prominin PF05478.6 gi|325969311|ref|YP_004245503.1| - 0.053 11.0 5.3 0.067 10.7 3.7 1.1 1 0 0 1 1 1 0 Prominin GAS PF13851.1 gi|325969311|ref|YP_004245503.1| - 0.059 12.5 13.8 0.1 11.8 9.6 1.3 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding GspL_C PF12693.2 gi|325969311|ref|YP_004245503.1| - 0.079 12.7 2.1 2.6 7.7 0.0 2.3 1 1 0 2 2 2 0 GspL periplasmic domain V_ATPase_I PF01496.14 gi|325969311|ref|YP_004245503.1| - 0.089 10.6 2.9 0.11 10.2 2.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2353 PF09789.4 gi|325969311|ref|YP_004245503.1| - 0.099 11.8 7.6 0.12 11.5 5.3 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) IDEAL PF08858.5 gi|325969311|ref|YP_004245503.1| - 0.1 12.1 0.7 0.1 12.1 0.5 2.8 3 0 0 3 3 2 0 IDEAL domain Flagellin_N PF00669.15 gi|325969311|ref|YP_004245503.1| - 0.11 12.3 1.6 0.5 10.1 0.1 2.1 2 0 0 2 2 2 0 Bacterial flagellin N-terminal helical region BLOC1_2 PF10046.4 gi|325969311|ref|YP_004245503.1| - 0.11 12.6 7.9 0.073 13.2 1.2 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Snf7 PF03357.16 gi|325969311|ref|YP_004245503.1| - 0.11 11.8 8.8 1.4 8.2 6.1 2.0 1 1 0 1 1 1 0 Snf7 Seryl_tRNA_N PF02403.17 gi|325969311|ref|YP_004245503.1| - 0.12 12.4 10.3 0.97 9.4 1.4 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Fmp27_WPPW PF10359.4 gi|325969311|ref|YP_004245503.1| - 0.12 10.7 4.6 0.15 10.4 3.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF4510 PF14971.1 gi|325969311|ref|YP_004245503.1| - 0.14 12.3 4.0 0.25 11.5 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) DUF4254 PF14063.1 gi|325969311|ref|YP_004245503.1| - 0.14 11.7 4.2 0.49 10.0 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4254) Orbi_VP3 PF01700.11 gi|325969311|ref|YP_004245503.1| - 0.19 9.1 1.0 0.19 9.1 0.7 1.1 1 0 0 1 1 1 0 Orbivirus VP3 (T2) protein TPR_MLP1_2 PF07926.7 gi|325969311|ref|YP_004245503.1| - 0.19 11.4 14.7 1.2 8.8 10.2 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Utp12 PF04003.7 gi|325969311|ref|YP_004245503.1| - 0.2 11.5 3.6 0.39 10.6 0.1 2.4 2 1 0 2 2 2 0 Dip2/Utp12 Family Fic_N PF13784.1 gi|325969311|ref|YP_004245503.1| - 0.21 11.4 0.2 0.21 11.4 0.1 2.0 2 1 0 2 2 2 0 Fic/DOC family N-terminal RasGAP_C PF03836.10 gi|325969311|ref|YP_004245503.1| - 0.22 11.1 9.8 0.16 11.6 1.2 2.1 1 1 1 2 2 2 0 RasGAP C-terminus Baculo_PEP_C PF04513.7 gi|325969311|ref|YP_004245503.1| - 0.23 11.2 5.3 1.9 8.3 0.2 2.1 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|325969311|ref|YP_004245503.1| - 0.25 10.2 6.4 0.33 9.8 4.5 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3450 PF11932.3 gi|325969311|ref|YP_004245503.1| - 0.27 10.4 6.6 2.2 7.4 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) IncA PF04156.9 gi|325969311|ref|YP_004245503.1| - 0.27 10.8 17.4 8.1 5.9 12.1 2.0 1 1 0 1 1 1 0 IncA protein GvpL_GvpF PF06386.6 gi|325969311|ref|YP_004245503.1| - 0.29 10.6 2.4 0.84 9.1 1.6 1.7 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF Laminin_I PF06008.9 gi|325969311|ref|YP_004245503.1| - 0.34 10.1 9.2 23 4.1 6.3 2.1 1 1 0 1 1 1 0 Laminin Domain I DUF948 PF06103.6 gi|325969311|ref|YP_004245503.1| - 0.4 10.5 6.4 0.28 11.0 1.2 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Cortex-I_coil PF09304.5 gi|325969311|ref|YP_004245503.1| - 0.43 10.6 15.3 2.8 8.0 3.5 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil DHC_N2 PF08393.8 gi|325969311|ref|YP_004245503.1| - 0.5 8.8 8.3 0.19 10.1 1.4 2.0 1 1 1 2 2 2 0 Dynein heavy chain, N-terminal region 2 CK2S PF15011.1 gi|325969311|ref|YP_004245503.1| - 0.53 10.0 7.0 0.32 10.7 1.9 2.0 1 1 1 2 2 2 0 Casein Kinase 2 substrate DivIC PF04977.10 gi|325969311|ref|YP_004245503.1| - 0.67 9.4 14.9 1.1 8.7 2.1 2.4 2 1 0 2 2 2 0 Septum formation initiator Spectrin PF00435.16 gi|325969311|ref|YP_004245503.1| - 0.7 10.2 9.2 1.4 9.2 3.2 2.6 1 1 1 2 2 2 0 Spectrin repeat Fzo_mitofusin PF04799.8 gi|325969311|ref|YP_004245503.1| - 0.71 9.2 9.7 0.094 12.0 1.3 2.2 1 1 1 2 2 2 0 fzo-like conserved region Reo_sigmaC PF04582.7 gi|325969311|ref|YP_004245503.1| - 0.71 8.9 3.0 0.99 8.5 2.1 1.3 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Ax_dynein_light PF10211.4 gi|325969311|ref|YP_004245503.1| - 0.72 9.6 10.9 0.85 9.4 1.0 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain SPAM PF02090.10 gi|325969311|ref|YP_004245503.1| - 0.74 9.8 8.0 4.8 7.1 5.6 1.9 1 1 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein COG2 PF06148.6 gi|325969311|ref|YP_004245503.1| - 0.75 9.6 8.7 1.6 8.6 2.0 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Mnd1 PF03962.10 gi|325969311|ref|YP_004245503.1| - 0.76 9.4 7.9 1.2 8.8 5.5 1.3 1 1 0 1 1 1 0 Mnd1 family Spc24 PF08286.6 gi|325969311|ref|YP_004245503.1| - 0.76 9.4 13.2 1.3 8.7 1.5 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 WXG100 PF06013.7 gi|325969311|ref|YP_004245503.1| - 0.78 9.7 5.3 3.1 7.8 0.2 2.7 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF4140 PF13600.1 gi|325969311|ref|YP_004245503.1| - 0.84 10.1 11.1 2.8 8.4 1.0 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) NPV_P10 PF05531.7 gi|325969311|ref|YP_004245503.1| - 0.85 9.9 7.2 2.2 8.5 1.1 2.6 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.8 gi|325969311|ref|YP_004245503.1| - 0.89 10.3 6.5 0.75 10.5 3.1 1.8 1 1 1 2 2 2 0 Occludin homology domain FlxA PF14282.1 gi|325969311|ref|YP_004245503.1| - 1 9.3 15.5 0.32 10.9 3.3 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF3138 PF11336.3 gi|325969311|ref|YP_004245503.1| - 1.2 7.2 3.6 2.4 6.2 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3138) Cep57_CLD_2 PF14197.1 gi|325969311|ref|YP_004245503.1| - 1.3 9.0 9.5 1.9 8.5 1.1 2.5 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF2203 PF09969.4 gi|325969311|ref|YP_004245503.1| - 1.4 9.1 7.5 1e+02 3.1 5.2 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Phage_GP20 PF06810.6 gi|325969311|ref|YP_004245503.1| - 1.6 8.1 10.5 0.89 8.9 1.0 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 LUC7 PF03194.10 gi|325969311|ref|YP_004245503.1| - 1.7 8.1 6.7 1.9 7.9 1.0 2.0 1 1 1 2 2 2 0 LUC7 N_terminus DUF3086 PF11285.3 gi|325969311|ref|YP_004245503.1| - 2 7.1 11.7 0.69 8.6 1.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) DUF848 PF05852.6 gi|325969311|ref|YP_004245503.1| - 2.1 8.2 10.7 2.6 7.9 5.0 2.0 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Striatin PF08232.7 gi|325969311|ref|YP_004245503.1| - 2.1 8.6 8.7 1.3 9.3 1.5 2.1 2 0 0 2 2 2 0 Striatin family EAP30 PF04157.11 gi|325969311|ref|YP_004245503.1| - 2.5 7.2 10.8 1.8 7.6 2.6 2.2 1 1 1 2 2 2 0 EAP30/Vps36 family DUF972 PF06156.8 gi|325969311|ref|YP_004245503.1| - 2.9 8.2 10.1 7 7.0 1.6 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF972) DUF4559 PF15112.1 gi|325969311|ref|YP_004245503.1| - 3.4 6.7 9.3 11 5.0 6.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) AAA_13 PF13166.1 gi|325969311|ref|YP_004245503.1| - 3.5 5.9 9.6 6.6 5.0 1.8 1.7 1 1 0 1 1 1 0 AAA domain TBPIP PF07106.8 gi|325969311|ref|YP_004245503.1| - 3.8 7.0 15.5 1.9 8.0 2.2 2.0 1 1 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF919 PF06034.6 gi|325969311|ref|YP_004245503.1| - 4.4 7.0 8.4 1.1 8.9 1.9 2.7 1 1 2 3 3 3 0 Nucleopolyhedrovirus protein of unknown function (DUF919) AATF-Che1 PF13339.1 gi|325969311|ref|YP_004245503.1| - 4.6 7.3 8.5 2.8 8.1 0.9 2.2 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Med4 PF10018.4 gi|325969311|ref|YP_004245503.1| - 4.7 6.5 10.3 7.2 5.9 1.1 2.1 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Nsp1_C PF05064.8 gi|325969311|ref|YP_004245503.1| - 4.9 6.8 11.3 4 7.1 1.9 2.1 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF4200 PF13863.1 gi|325969311|ref|YP_004245503.1| - 5 7.0 16.4 2.9e+02 1.3 11.2 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Laminin_II PF06009.7 gi|325969311|ref|YP_004245503.1| - 5.8 6.6 10.6 21 4.8 7.3 1.8 1 1 0 1 1 1 0 Laminin Domain II DUF812 PF05667.6 gi|325969311|ref|YP_004245503.1| - 7.3 4.9 12.3 53 2.1 8.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF724 PF05266.9 gi|325969311|ref|YP_004245503.1| - 7.5 6.1 13.0 45 3.5 9.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Bacillus_HBL PF05791.6 gi|325969311|ref|YP_004245503.1| - 8.1 5.7 9.2 1.4 8.2 1.6 2.1 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) FlaC_arch PF05377.6 gi|325969311|ref|YP_004245503.1| - 8.6 6.3 10.6 14 5.6 0.7 2.5 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) PspA_IM30 PF04012.7 gi|325969311|ref|YP_004245503.1| - 9.3 5.5 13.4 1.4e+02 1.6 9.2 2.0 1 1 0 1 1 1 0 PspA/IM30 family CCDC142 PF14923.1 gi|325969311|ref|YP_004245503.1| - 9.7 4.3 9.1 2.1 6.5 1.3 2.0 1 1 1 2 2 2 0 Coiled-coil protein 142 DUF3194 PF11419.3 gi|325969312|ref|YP_004245504.1| - 0.02 15.0 0.6 0.033 14.3 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3194) DHH PF01368.15 gi|325969313|ref|YP_004245505.1| - 2.2e-11 43.5 0.1 3.1e-11 43.0 0.1 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|325969313|ref|YP_004245505.1| - 7.9e-06 25.4 0.1 2.1e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 DHHA1 domain Peptidase_S41 PF03572.13 gi|325969313|ref|YP_004245505.1| - 0.022 14.1 0.0 0.048 13.0 0.0 1.6 1 0 0 1 1 1 0 Peptidase family S41 T2SE PF00437.15 gi|325969315|ref|YP_004245507.1| - 7.2e-51 172.6 0.0 1.1e-50 172.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|325969315|ref|YP_004245507.1| - 0.0015 18.0 0.2 0.004 16.6 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|325969315|ref|YP_004245507.1| - 0.0026 18.0 0.0 0.0068 16.7 0.0 1.7 1 0 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|325969315|ref|YP_004245507.1| - 0.0056 17.1 0.0 0.026 15.0 0.0 2.1 2 0 0 2 2 2 1 Miro-like protein AAA_16 PF13191.1 gi|325969315|ref|YP_004245507.1| - 0.0084 16.1 0.0 0.022 14.7 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain PIF1 PF05970.9 gi|325969315|ref|YP_004245507.1| - 0.02 13.8 0.0 0.044 12.7 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase DUF87 PF01935.12 gi|325969315|ref|YP_004245507.1| - 0.024 14.4 0.2 0.5 10.1 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|325969315|ref|YP_004245507.1| - 0.043 13.2 0.2 1.1 8.6 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|325969315|ref|YP_004245507.1| - 0.099 12.9 1.6 0.13 12.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|325969315|ref|YP_004245507.1| - 0.13 11.6 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF1395 PF07160.7 gi|325969316|ref|YP_004245508.1| - 0.06 12.8 0.1 0.073 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1395) APG17 PF04108.7 gi|325969316|ref|YP_004245508.1| - 0.066 11.9 0.9 0.067 11.9 0.6 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 PLU-1 PF08429.6 gi|325969316|ref|YP_004245508.1| - 0.099 11.5 0.1 0.11 11.3 0.1 1.0 1 0 0 1 1 1 0 PLU-1-like protein NPV_P10 PF05531.7 gi|325969316|ref|YP_004245508.1| - 0.11 12.8 0.6 0.12 12.5 0.4 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|325969316|ref|YP_004245508.1| - 0.14 10.7 2.0 0.15 10.7 1.4 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF2570 PF10828.3 gi|325969316|ref|YP_004245508.1| - 0.34 10.5 2.4 0.43 10.2 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) A2M_recep PF07677.9 gi|325969317|ref|YP_004245509.1| - 0.18 12.0 1.4 1.3 9.3 0.1 2.3 1 1 1 2 2 2 0 A-macroglobulin receptor DUF327 PF03885.8 gi|325969319|ref|YP_004245511.1| - 0.077 12.8 1.0 1.8 8.4 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF327) FANCI_S2 PF14676.1 gi|325969319|ref|YP_004245511.1| - 0.084 12.7 0.2 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 FANCI solenoid 2 PMBR PF09373.5 gi|325969319|ref|YP_004245511.1| - 0.63 10.1 5.9 0.83 9.7 0.2 3.0 3 0 0 3 3 3 0 Pseudomurein-binding repeat PDDEXK_4 PF14281.1 gi|325969320|ref|YP_004245512.1| - 0.028 14.2 1.9 0.034 14.0 1.3 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DUF2000 PF09391.5 gi|325969320|ref|YP_004245512.1| - 0.056 13.1 0.2 1.3 8.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2000) NPV_P10 PF05531.7 gi|325969321|ref|YP_004245513.1| - 0.39 11.0 3.1 11 6.3 0.1 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Borrelia_REV PF03978.8 gi|325969321|ref|YP_004245513.1| - 1.5 8.5 5.1 2.4 7.8 1.2 2.1 1 1 1 2 2 2 0 Borrelia burgdorferi REV protein DUF217 PF02697.9 gi|325969322|ref|YP_004245514.1| - 0.0015 18.7 2.0 0.0018 18.4 1.4 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_3 PF12651.2 gi|325969322|ref|YP_004245514.1| - 0.028 14.1 0.5 0.29 10.9 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix domain Helicase_RecD PF05127.9 gi|325969323|ref|YP_004245515.1| - 2.6e-57 193.2 0.0 4.2e-57 192.6 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|325969323|ref|YP_004245515.1| - 6.1e-49 166.0 0.0 2.7e-48 163.9 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|325969323|ref|YP_004245515.1| - 4.5e-24 83.9 0.0 1.8e-23 82.0 0.0 2.1 2 0 0 2 2 1 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|325969323|ref|YP_004245515.1| - 8.8e-11 41.8 0.0 1.5e-07 31.4 0.0 2.5 2 0 0 2 2 2 2 Possible tRNA binding domain Acetyltransf_1 PF00583.19 gi|325969323|ref|YP_004245515.1| - 6.8e-08 32.4 0.1 2.6e-07 30.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|325969323|ref|YP_004245515.1| - 8e-08 32.3 0.0 2.5e-07 30.7 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|325969323|ref|YP_004245515.1| - 0.013 15.3 0.0 0.032 14.0 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|325969323|ref|YP_004245515.1| - 0.026 14.6 0.0 0.075 13.1 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|325969323|ref|YP_004245515.1| - 0.081 12.6 0.1 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 FR47-like protein AAA_16 PF13191.1 gi|325969323|ref|YP_004245515.1| - 0.13 12.2 0.0 2.3 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain RHH_1 PF01402.16 gi|325969323|ref|YP_004245515.1| - 0.62 10.0 3.9 15 5.6 0.3 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Oxidored_q1 PF00361.15 gi|325969325|ref|YP_004245517.1| - 1.7e-34 119.2 35.6 1.7e-34 119.2 24.7 2.2 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF3437 PF11919.3 gi|325969325|ref|YP_004245517.1| - 3.4 7.4 4.6 19 5.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3437) Oxidored_q1 PF00361.15 gi|325969326|ref|YP_004245518.1| - 6.5e-31 107.5 23.1 5.4e-29 101.2 13.5 4.5 5 1 0 5 5 5 2 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF162 PF02589.10 gi|325969327|ref|YP_004245519.1| - 4.6e-47 159.9 0.1 6.1e-47 159.5 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|325969327|ref|YP_004245519.1| - 5.6e-11 42.3 2.3 9.2e-11 41.6 1.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325969327|ref|YP_004245519.1| - 1.5e-08 34.8 2.6 9.5e-08 32.2 2.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325969327|ref|YP_004245519.1| - 2.7e-07 30.8 4.1 5.3e-07 29.9 2.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325969327|ref|YP_004245519.1| - 4.2e-07 30.1 1.7 1.1e-06 28.7 1.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325969327|ref|YP_004245519.1| - 4.5e-07 30.1 2.2 0.019 15.3 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325969327|ref|YP_004245519.1| - 7.2e-06 25.7 4.7 3.4e-05 23.5 3.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325969327|ref|YP_004245519.1| - 1.8e-05 24.3 7.5 0.0023 17.7 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|325969327|ref|YP_004245519.1| - 4.3e-05 22.9 8.0 0.00091 18.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|325969327|ref|YP_004245519.1| - 0.0025 18.5 5.3 0.0065 17.1 3.7 1.8 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|325969327|ref|YP_004245519.1| - 0.012 15.4 8.8 0.018 14.9 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|325969327|ref|YP_004245519.1| - 0.016 14.8 0.9 0.13 11.9 0.0 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|325969327|ref|YP_004245519.1| - 0.024 14.9 7.2 0.19 12.1 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|325969327|ref|YP_004245519.1| - 0.038 14.5 12.0 1.4 9.6 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325969327|ref|YP_004245519.1| - 0.15 11.8 5.6 0.32 10.8 0.7 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325969327|ref|YP_004245519.1| - 0.39 11.3 3.8 2.6 8.6 0.1 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|325969327|ref|YP_004245519.1| - 0.75 10.2 5.3 0.72 10.2 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain AIRS_C PF02769.17 gi|325969328|ref|YP_004245520.1| - 4.8e-21 75.3 0.0 7e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|325969328|ref|YP_004245520.1| - 2.1e-10 40.6 0.0 4.9e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PALP PF00291.20 gi|325969329|ref|YP_004245521.1| - 6.5e-84 281.7 4.2 7.7e-84 281.5 2.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|325969329|ref|YP_004245521.1| - 1.6e-08 33.8 0.1 7.7e-08 31.6 0.0 2.2 2 0 0 2 2 2 1 ACT domain ADH_zinc_N PF00107.21 gi|325969329|ref|YP_004245521.1| - 0.0093 15.5 2.1 0.33 10.4 0.1 2.9 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ACT_6 PF13740.1 gi|325969329|ref|YP_004245521.1| - 0.0095 15.6 0.1 0.04 13.6 0.0 2.1 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|325969329|ref|YP_004245521.1| - 0.037 14.3 0.0 0.16 12.2 0.0 2.1 1 1 0 1 1 1 0 ACT domain Lactamase_B_3 PF13483.1 gi|325969329|ref|YP_004245521.1| - 0.05 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Ribonuc_L-PSP PF01042.16 gi|325969330|ref|YP_004245522.1| - 3.9e-41 139.5 0.0 4.4e-41 139.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Exo5 PF09810.4 gi|325969331|ref|YP_004245523.1| - 1.2e-09 37.8 0.8 0.0013 18.0 0.0 3.1 2 1 1 3 3 3 2 Exonuclease V - a 5' deoxyribonuclease Cas_Cas4 PF01930.12 gi|325969331|ref|YP_004245523.1| - 5.2e-05 23.2 3.2 0.00011 22.1 0.1 2.5 1 1 1 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|325969331|ref|YP_004245523.1| - 8.3e-05 22.0 0.0 0.00071 19.0 0.0 1.9 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily HSDR_N PF04313.9 gi|325969331|ref|YP_004245523.1| - 0.00081 19.1 0.1 0.0015 18.3 0.0 1.4 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) RC-P840_PscD PF10657.4 gi|325969331|ref|YP_004245523.1| - 0.091 12.6 1.5 0.2 11.4 0.2 2.0 2 0 0 2 2 2 0 Photosystem P840 reaction centre protein PscD MoeA_N PF03453.12 gi|325969333|ref|YP_004245525.1| - 9.2e-49 164.8 0.1 1.5e-48 164.2 0.0 1.2 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|325969333|ref|YP_004245525.1| - 2.1e-29 101.8 0.0 3.5e-29 101.0 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|325969333|ref|YP_004245525.1| - 1.7e-15 56.7 0.9 4.1e-15 55.5 0.0 2.2 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) NurA PF09376.5 gi|325969335|ref|YP_004245527.1| - 1.3e-18 67.4 9.9 8.2e-18 64.7 6.9 2.2 1 1 0 1 1 1 1 NurA domain Baculo_11_kDa PF06143.6 gi|325969336|ref|YP_004245528.1| - 0.023 14.0 1.4 0.044 13.1 1.0 1.4 1 0 0 1 1 1 0 Baculovirus 11 kDa family Thioredoxin_3 PF13192.1 gi|325969337|ref|YP_004245529.1| - 1.5e-10 40.7 0.1 5.6e-10 38.9 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|325969337|ref|YP_004245529.1| - 1.2e-07 31.5 0.1 1.1e-06 28.5 0.0 2.5 3 0 0 3 3 3 1 Glutaredoxin Thioredoxin_4 PF13462.1 gi|325969337|ref|YP_004245529.1| - 0.00064 19.7 0.3 0.032 14.2 0.0 2.9 2 2 0 3 3 3 1 Thioredoxin AAA_assoc PF14363.1 gi|325969337|ref|YP_004245529.1| - 0.078 13.0 0.4 1.8 8.6 0.0 2.4 2 0 0 2 2 2 0 Domain associated at C-terminal with AAA Peptidase_S49 PF01343.13 gi|325969337|ref|YP_004245529.1| - 0.11 12.2 0.0 0.36 10.5 0.0 1.7 2 0 0 2 2 2 0 Peptidase family S49 Radical_SAM PF04055.16 gi|325969338|ref|YP_004245530.1| - 4.3e-14 53.0 0.0 1.2e-13 51.5 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.2 gi|325969338|ref|YP_004245530.1| - 7.3e-05 22.6 0.1 0.00023 21.0 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif MarC PF01914.12 gi|325969340|ref|YP_004245532.1| - 1.9e-36 125.1 17.2 2.1e-36 124.9 11.9 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein Polysacc_synt_C PF14667.1 gi|325969340|ref|YP_004245532.1| - 0.64 9.8 13.8 3.7 7.3 4.7 2.4 1 1 1 2 2 2 0 Polysaccharide biosynthesis C-terminal domain LysE PF01810.13 gi|325969340|ref|YP_004245532.1| - 0.68 9.1 9.8 3.6 6.8 6.7 2.0 1 1 0 1 1 1 0 LysE type translocator DUF202 PF02656.10 gi|325969340|ref|YP_004245532.1| - 9.6 6.5 8.2 0.71 10.1 0.8 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) Meth_synt_2 PF01717.13 gi|325969341|ref|YP_004245533.1| - 9.4e-42 143.1 0.0 8.1e-25 87.4 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|325969341|ref|YP_004245533.1| - 1e-16 61.1 0.0 1.5e-05 24.4 0.0 3.1 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain tRNA-synt_2 PF00152.15 gi|325969342|ref|YP_004245534.1| - 7e-59 199.2 0.0 1.2e-58 198.5 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) GATase_3 PF07685.9 gi|325969343|ref|YP_004245535.1| - 5.5e-28 97.5 0.0 9.8e-28 96.7 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|325969343|ref|YP_004245535.1| - 3.6e-21 75.4 0.0 5.6e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|325969343|ref|YP_004245535.1| - 3.8e-13 49.4 0.0 1e-12 48.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|325969343|ref|YP_004245535.1| - 0.021 14.3 0.0 0.048 13.1 0.0 1.6 2 0 0 2 2 2 0 Glutamine amidotransferase class-I MobB PF03205.9 gi|325969343|ref|YP_004245535.1| - 0.023 14.3 0.0 0.084 12.5 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SSF PF00474.12 gi|325969344|ref|YP_004245536.1| - 0.011 14.3 0.7 0.012 14.3 0.5 1.2 1 0 0 1 1 1 0 Sodium:solute symporter family HTH_45 PF14947.1 gi|325969345|ref|YP_004245537.1| - 5.5e-08 32.5 0.0 7.4e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4393 PF14337.1 gi|325969345|ref|YP_004245537.1| - 0.0033 16.9 0.0 0.0033 16.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4393) HTH_12 PF08461.5 gi|325969345|ref|YP_004245537.1| - 0.033 13.9 0.0 0.042 13.5 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4382 PF14321.1 gi|325969346|ref|YP_004245538.1| - 9.5e-25 87.2 0.3 1.1e-24 87.0 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) DUF4249 PF14054.1 gi|325969346|ref|YP_004245538.1| - 0.019 14.3 0.2 0.033 13.5 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4249) PLDc_N PF13396.1 gi|325969346|ref|YP_004245538.1| - 0.86 9.3 5.9 1.7 8.3 4.1 1.5 1 0 0 1 1 1 0 Phospholipase_D-nuclease N-terminal AA_permease_2 PF13520.1 gi|325969347|ref|YP_004245539.1| - 2.3e-42 145.0 51.0 2.9e-42 144.6 35.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|325969347|ref|YP_004245539.1| - 3.5e-32 111.3 49.9 7.9e-32 110.2 34.6 1.5 1 1 0 1 1 1 1 Amino acid permease TraQ PF09679.5 gi|325969347|ref|YP_004245539.1| - 2.3 8.1 7.5 0.8 9.6 0.1 3.2 3 0 0 3 3 3 0 Type-F conjugative transfer system pilin chaperone (TraQ) PfkB PF00294.19 gi|325969348|ref|YP_004245540.1| - 5.1e-52 176.8 0.0 5.9e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|325969348|ref|YP_004245540.1| - 5.1e-05 22.5 0.0 7.9e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase AMP-binding PF00501.23 gi|325969349|ref|YP_004245541.1| - 7.8e-72 241.9 0.0 9.6e-72 241.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325969349|ref|YP_004245541.1| - 2.7e-15 57.0 0.0 5.3e-15 56.1 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Ion_trans_2 PF07885.11 gi|325969350|ref|YP_004245542.1| - 2.6e-16 59.0 6.9 5.6e-16 58.0 4.8 1.6 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.13 gi|325969350|ref|YP_004245542.1| - 5.5e-11 42.4 0.2 1.3e-10 41.3 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain Ion_trans PF00520.26 gi|325969350|ref|YP_004245542.1| - 6.2e-09 35.4 6.1 1.3e-08 34.3 4.3 1.6 1 0 0 1 1 1 1 Ion transport protein TrkA_C PF02080.16 gi|325969350|ref|YP_004245542.1| - 0.00073 19.0 0.4 0.0019 17.7 0.0 1.9 2 0 0 2 2 2 1 TrkA-C domain Lig_chan PF00060.21 gi|325969350|ref|YP_004245542.1| - 0.0015 18.2 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Ligand-gated ion channel DUF2207 PF09972.4 gi|325969350|ref|YP_004245542.1| - 3.4 6.1 6.2 2.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) Epimerase PF01370.16 gi|325969351|ref|YP_004245543.1| - 4.8e-49 166.9 0.0 6.1e-49 166.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|325969351|ref|YP_004245543.1| - 2.1e-16 59.4 0.0 2.8e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|325969351|ref|YP_004245543.1| - 6.4e-16 58.0 0.0 8.1e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|325969351|ref|YP_004245543.1| - 1.4e-15 56.9 0.0 1.4e-14 53.6 0.0 2.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|325969351|ref|YP_004245543.1| - 2e-12 46.5 0.2 1.4e-10 40.4 0.2 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|325969351|ref|YP_004245543.1| - 7.8e-09 35.7 0.0 1.1e-08 35.3 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|325969351|ref|YP_004245543.1| - 0.00016 21.6 0.3 0.0011 18.9 0.0 2.3 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|325969351|ref|YP_004245543.1| - 0.00032 20.0 0.0 0.0041 16.4 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family UPF0146 PF03686.8 gi|325969351|ref|YP_004245543.1| - 0.00075 19.3 0.0 0.0017 18.2 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Arr-ms PF12120.3 gi|325969351|ref|YP_004245543.1| - 0.049 13.5 0.0 0.31 11.0 0.0 2.1 2 0 0 2 2 2 0 Rifampin ADP-ribosyl transferase KR PF08659.5 gi|325969351|ref|YP_004245543.1| - 0.065 12.8 0.0 0.12 11.9 0.0 1.5 1 1 0 1 1 1 0 KR domain Ldh_1_N PF00056.18 gi|325969351|ref|YP_004245543.1| - 0.094 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Frag1 PF10277.4 gi|325969352|ref|YP_004245544.1| - 0.0035 16.8 5.1 0.0042 16.5 3.5 1.1 1 0 0 1 1 1 1 Frag1/DRAM/Sfk1 family COX15-CtaA PF02628.10 gi|325969352|ref|YP_004245544.1| - 0.042 12.7 6.9 0.015 14.2 2.9 1.5 1 1 0 1 1 1 0 Cytochrome oxidase assembly protein 7tm_4 PF13853.1 gi|325969352|ref|YP_004245544.1| - 0.2 11.4 6.0 0.25 11.1 4.1 1.1 1 0 0 1 1 1 0 Olfactory receptor GerA PF03323.8 gi|325969352|ref|YP_004245544.1| - 1.5 6.8 7.7 2.5 6.1 5.3 1.3 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein CbiX PF01903.12 gi|325969354|ref|YP_004245546.1| - 0.083 13.0 0.0 15 5.7 0.0 2.3 2 0 0 2 2 2 0 CbiX CobD_Cbib PF03186.8 gi|325969355|ref|YP_004245547.1| - 8.1e-86 287.7 0.6 1.1e-85 287.2 0.4 1.2 1 0 0 1 1 1 1 CobD/Cbib protein AsnC_trans_reg PF01037.16 gi|325969356|ref|YP_004245548.1| - 2.9e-09 36.4 0.3 5.3e-09 35.6 0.2 1.4 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|325969356|ref|YP_004245548.1| - 1.4e-07 31.2 0.5 1.8e-06 27.6 0.0 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|325969356|ref|YP_004245548.1| - 1.2e-06 28.0 0.5 9.6e-06 25.1 0.1 2.6 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|325969356|ref|YP_004245548.1| - 2.2e-06 26.9 0.1 2.7e-05 23.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|325969356|ref|YP_004245548.1| - 3e-06 26.8 0.5 9.3e-06 25.2 0.1 2.0 2 1 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|325969356|ref|YP_004245548.1| - 5.3e-06 26.1 0.0 1.1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|325969356|ref|YP_004245548.1| - 0.0016 17.9 0.7 0.0049 16.4 0.5 1.8 1 1 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.1 gi|325969356|ref|YP_004245548.1| - 0.0019 18.2 0.0 0.0036 17.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|325969356|ref|YP_004245548.1| - 0.0021 17.6 2.7 0.0079 15.8 0.3 3.0 3 1 0 3 3 3 1 HTH domain HTH_10 PF04967.7 gi|325969356|ref|YP_004245548.1| - 0.0025 17.3 1.4 0.11 12.0 0.0 2.7 3 0 0 3 3 3 1 HTH DNA binding domain HTH_34 PF13601.1 gi|325969356|ref|YP_004245548.1| - 0.0029 17.6 0.1 0.0087 16.0 0.0 1.9 2 1 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|325969356|ref|YP_004245548.1| - 0.0047 16.6 0.1 0.014 15.0 0.1 1.9 2 1 0 2 2 2 1 MarR family HTH_8 PF02954.14 gi|325969356|ref|YP_004245548.1| - 0.011 15.3 2.5 0.05 13.1 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family RP-C PF03428.8 gi|325969356|ref|YP_004245548.1| - 0.011 15.2 0.1 0.027 13.9 0.0 1.6 1 1 0 1 1 1 0 Replication protein C N-terminal domain TrmB PF01978.14 gi|325969356|ref|YP_004245548.1| - 0.011 15.4 1.2 0.21 11.2 0.2 3.1 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|325969356|ref|YP_004245548.1| - 0.014 15.7 0.5 0.048 13.9 0.1 2.2 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_1_2 PF13022.1 gi|325969356|ref|YP_004245548.1| - 0.029 14.1 0.1 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase RNase_P_Rpp14 PF01900.14 gi|325969356|ref|YP_004245548.1| - 0.11 12.3 0.0 0.87 9.5 0.0 2.1 2 0 0 2 2 2 0 Rpp14/Pop5 family DUF357 PF04010.8 gi|325969357|ref|YP_004245549.1| - 1.9e-19 69.1 1.2 3.1e-19 68.4 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|325969357|ref|YP_004245549.1| - 5e-09 36.4 0.1 1.3e-07 31.7 0.1 2.6 2 1 0 2 2 2 1 Cytidylyltransferase Peptidase_M64 PF09471.5 gi|325969358|ref|YP_004245550.1| - 0.069 12.7 0.1 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 IgA Peptidase M64 tRNA-synt_2b PF00587.20 gi|325969359|ref|YP_004245551.1| - 4.1e-25 88.3 1.0 8.2e-25 87.3 0.7 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|325969359|ref|YP_004245551.1| - 3.1e-20 71.9 0.1 7.3e-20 70.7 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|325969359|ref|YP_004245551.1| - 1.4e-11 44.1 0.0 3.4e-11 42.9 0.0 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal RIO1 PF01163.17 gi|325969361|ref|YP_004245553.1| - 0.00011 21.5 0.0 0.00015 21.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Choline_kinase PF01633.15 gi|325969361|ref|YP_004245553.1| - 0.011 15.2 0.0 1.9 8.0 0.0 2.2 1 1 1 2 2 2 0 Choline/ethanolamine kinase PUA PF01472.15 gi|325969362|ref|YP_004245554.1| - 3.5e-21 74.7 0.2 5.1e-21 74.1 0.1 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|325969362|ref|YP_004245554.1| - 0.00063 19.4 0.0 0.0013 18.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) tRNA_bind PF01588.15 gi|325969363|ref|YP_004245555.1| - 1.6e-26 91.9 0.1 1.8e-26 91.8 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Peptidase_M16 PF00675.15 gi|325969364|ref|YP_004245556.1| - 1.3e-18 67.2 0.0 3.1e-18 65.9 0.0 1.6 2 0 0 2 2 2 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.16 gi|325969364|ref|YP_004245556.1| - 2.1e-13 50.3 0.1 1.1e-12 48.0 0.0 2.0 2 0 0 2 2 2 1 Peptidase M16 inactive domain SIR2 PF02146.12 gi|325969365|ref|YP_004245557.1| - 1.3e-50 171.5 0.0 1.6e-50 171.2 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.17 gi|325969365|ref|YP_004245557.1| - 0.0042 16.8 0.1 0.88 9.3 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain ADK_lid PF05191.9 gi|325969365|ref|YP_004245557.1| - 0.047 13.3 0.4 0.13 11.9 0.3 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid Glycos_transf_1 PF00534.15 gi|325969365|ref|YP_004245557.1| - 0.1 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|325969366|ref|YP_004245558.1| - 1.7e-09 38.0 0.0 1.9e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|325969366|ref|YP_004245558.1| - 6.4e-06 26.0 0.2 9.7e-06 25.4 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.6 gi|325969366|ref|YP_004245558.1| - 9.3e-06 25.3 0.0 0.02 14.3 0.0 2.1 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_transf_4 PF13439.1 gi|325969366|ref|YP_004245558.1| - 0.041 13.6 0.2 0.048 13.3 0.1 1.3 1 1 0 1 1 1 0 Glycosyltransferase Family 4 HrcA_DNA-bdg PF03444.10 gi|325969367|ref|YP_004245559.1| - 2.4e-05 23.6 0.7 0.016 14.6 0.1 2.1 1 1 1 2 2 2 2 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|325969367|ref|YP_004245559.1| - 0.0019 18.2 0.2 0.0025 17.9 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator DUF2067 PF09840.4 gi|325969367|ref|YP_004245559.1| - 0.01 15.3 0.5 0.01 15.3 0.3 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) TFIIE_alpha PF02002.12 gi|325969367|ref|YP_004245559.1| - 0.014 14.9 0.2 0.018 14.5 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit RPA_C PF08784.6 gi|325969367|ref|YP_004245559.1| - 0.015 15.6 0.1 0.017 15.4 0.1 1.1 1 0 0 1 1 1 0 Replication protein A C terminal MarR_2 PF12802.2 gi|325969367|ref|YP_004245559.1| - 0.017 14.7 0.1 0.022 14.4 0.1 1.2 1 0 0 1 1 1 0 MarR family Integrase_1 PF12835.2 gi|325969367|ref|YP_004245559.1| - 0.026 14.2 0.0 0.028 14.1 0.0 1.1 1 0 0 1 1 1 0 Integrase HTH_27 PF13463.1 gi|325969367|ref|YP_004245559.1| - 0.029 14.6 0.2 0.035 14.4 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain DDRGK PF09756.4 gi|325969367|ref|YP_004245559.1| - 0.032 13.6 0.2 0.037 13.4 0.2 1.1 1 0 0 1 1 1 0 DDRGK domain TrmB PF01978.14 gi|325969367|ref|YP_004245559.1| - 0.034 13.8 0.3 0.07 12.8 0.1 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB TRM PF02005.11 gi|325969367|ref|YP_004245559.1| - 0.071 12.0 0.1 0.075 11.9 0.0 1.0 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase DUF4423 PF14394.1 gi|325969367|ref|YP_004245559.1| - 0.11 11.9 0.1 0.13 11.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_IclR PF09339.5 gi|325969367|ref|YP_004245559.1| - 0.12 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Glyco_hydro_57 PF03065.10 gi|325969368|ref|YP_004245560.1| - 7.8e-39 133.5 2.6 1.9e-38 132.3 1.8 1.6 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 A2M_N PF01835.14 gi|325969368|ref|YP_004245560.1| - 0.034 14.3 0.0 0.07 13.3 0.0 1.5 1 0 0 1 1 1 0 MG2 domain Amidohydro_1 PF01979.15 gi|325969369|ref|YP_004245561.1| - 2.1e-06 27.6 0.0 3.7e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|325969369|ref|YP_004245561.1| - 0.0065 16.2 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase Pyr_redox_2 PF07992.9 gi|325969370|ref|YP_004245562.1| - 0.026 14.3 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_4 PF13439.1 gi|325969370|ref|YP_004245562.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 VWA_2 PF13519.1 gi|325969371|ref|YP_004245563.1| - 2e-05 24.7 0.1 3.7e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|325969371|ref|YP_004245563.1| - 0.00077 18.6 2.6 0.0081 15.3 0.1 2.8 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein PTPS PF01242.14 gi|325969372|ref|YP_004245564.1| - 3.1e-12 46.2 0.0 3.7e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase TP_methylase PF00590.15 gi|325969373|ref|YP_004245565.1| - 1.5e-38 132.6 0.1 1.7e-38 132.4 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_M54 PF07998.6 gi|325969374|ref|YP_004245566.1| - 1.1e-27 97.1 0.0 1.2e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|325969374|ref|YP_004245566.1| - 0.00014 21.5 0.0 0.00017 21.3 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|325969374|ref|YP_004245566.1| - 0.0031 18.0 0.0 0.0042 17.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|325969374|ref|YP_004245566.1| - 0.0062 16.6 0.0 0.007 16.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|325969374|ref|YP_004245566.1| - 0.0064 15.0 0.3 0.0097 14.4 0.2 1.2 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_4 PF13583.1 gi|325969374|ref|YP_004245566.1| - 0.011 15.2 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|325969374|ref|YP_004245566.1| - 0.015 14.1 0.0 0.021 13.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Reprolysin_5 PF13688.1 gi|325969374|ref|YP_004245566.1| - 0.02 14.8 0.0 0.022 14.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M24 PF00557.19 gi|325969374|ref|YP_004245566.1| - 0.085 12.4 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Metallopeptidase family M24 Peptidase_M43 PF05572.8 gi|325969374|ref|YP_004245566.1| - 0.1 12.2 0.1 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Methyltransf_26 PF13659.1 gi|325969375|ref|YP_004245567.1| - 7.2e-14 51.8 0.0 1.4e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325969375|ref|YP_004245567.1| - 7.9e-08 32.0 0.0 1.5e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|325969375|ref|YP_004245567.1| - 7e-06 25.6 0.2 3.7e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 DNA methylase Methyltransf_15 PF09445.5 gi|325969375|ref|YP_004245567.1| - 0.00012 21.6 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.11 gi|325969375|ref|YP_004245567.1| - 0.00016 20.8 0.0 0.00033 19.8 0.0 1.5 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_18 PF12847.2 gi|325969375|ref|YP_004245567.1| - 0.00023 21.7 0.0 0.00058 20.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|325969375|ref|YP_004245567.1| - 0.00095 18.5 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Met_10 PF02475.11 gi|325969375|ref|YP_004245567.1| - 0.0014 18.2 0.0 0.0024 17.4 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Pribosyltran PF00156.22 gi|325969375|ref|YP_004245567.1| - 0.018 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase domain MethyltransfD12 PF02086.10 gi|325969375|ref|YP_004245567.1| - 0.038 13.4 0.2 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase UPF0020 PF01170.13 gi|325969375|ref|YP_004245567.1| - 0.049 13.2 0.0 0.2 11.2 0.0 1.9 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 AAA_10 PF12846.2 gi|325969376|ref|YP_004245568.1| - 2.5e-28 99.3 1.5 3.2e-28 99.0 1.1 1.1 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|325969376|ref|YP_004245568.1| - 1.5e-15 57.6 0.2 3.8e-15 56.3 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function DUF87 Zot PF05707.7 gi|325969376|ref|YP_004245568.1| - 5.4e-09 35.7 0.2 1.1e-06 28.2 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|325969376|ref|YP_004245568.1| - 2.8e-07 29.4 0.0 4.7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|325969376|ref|YP_004245568.1| - 2.3e-06 27.2 0.1 2.4e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|325969376|ref|YP_004245568.1| - 5.9e-06 26.4 2.1 0.01 15.9 1.5 2.7 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|325969376|ref|YP_004245568.1| - 1.9e-05 24.2 0.1 0.04 13.4 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF853 PF05872.7 gi|325969376|ref|YP_004245568.1| - 0.00029 19.3 0.1 0.33 9.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) T2SE PF00437.15 gi|325969376|ref|YP_004245568.1| - 0.00059 18.8 0.0 0.0011 17.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|325969376|ref|YP_004245568.1| - 0.001 18.9 1.0 0.17 11.7 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|325969376|ref|YP_004245568.1| - 0.0019 18.2 1.9 0.014 15.4 1.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain MobB PF03205.9 gi|325969376|ref|YP_004245568.1| - 0.0021 17.7 0.0 0.0041 16.8 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|325969376|ref|YP_004245568.1| - 0.0028 17.3 0.0 0.0057 16.3 0.0 1.5 1 0 0 1 1 1 1 NACHT domain PhoH PF02562.11 gi|325969376|ref|YP_004245568.1| - 0.0032 16.7 0.1 0.049 12.8 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein ABC_tran PF00005.22 gi|325969376|ref|YP_004245568.1| - 0.0039 17.5 0.0 0.01 16.1 0.0 1.7 1 0 0 1 1 1 1 ABC transporter ResIII PF04851.10 gi|325969376|ref|YP_004245568.1| - 0.0065 16.3 0.0 1.6 8.4 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.24 gi|325969376|ref|YP_004245568.1| - 0.0085 16.2 1.4 0.93 9.6 0.1 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Pox_A32 PF04665.7 gi|325969376|ref|YP_004245568.1| - 0.0093 15.2 2.0 0.4 9.9 0.1 2.5 2 0 0 2 2 2 1 Poxvirus A32 protein T4SS-DNA_transf PF02534.9 gi|325969376|ref|YP_004245568.1| - 0.011 14.3 0.0 0.019 13.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer ATP_bind_1 PF03029.12 gi|325969376|ref|YP_004245568.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|325969376|ref|YP_004245568.1| - 0.016 14.9 0.0 0.051 13.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|325969376|ref|YP_004245568.1| - 0.021 14.5 0.3 0.058 13.0 0.0 1.9 2 1 0 2 2 2 0 Archaeal ATPase AAA_29 PF13555.1 gi|325969376|ref|YP_004245568.1| - 0.024 14.1 0.0 0.052 13.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.4 gi|325969376|ref|YP_004245568.1| - 0.026 13.9 0.0 0.069 12.6 0.0 1.7 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ArgK PF03308.11 gi|325969376|ref|YP_004245568.1| - 0.03 13.1 0.0 0.075 11.7 0.0 1.6 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|325969376|ref|YP_004245568.1| - 0.035 13.8 0.4 0.87 9.2 0.1 2.7 3 0 0 3 3 2 0 NTPase cobW PF02492.14 gi|325969376|ref|YP_004245568.1| - 0.04 13.3 0.1 0.082 12.3 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|325969376|ref|YP_004245568.1| - 0.099 13.1 0.0 0.45 11.0 0.0 2.1 2 0 0 2 2 1 0 Miro-like protein RNA_helicase PF00910.17 gi|325969376|ref|YP_004245568.1| - 0.11 12.6 0.0 0.35 11.0 0.0 1.8 2 0 0 2 2 1 0 RNA helicase DUF2075 PF09848.4 gi|325969376|ref|YP_004245568.1| - 0.11 11.4 0.1 8.3 5.2 0.0 2.6 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.20 gi|325969376|ref|YP_004245568.1| - 0.11 11.9 0.0 0.24 10.8 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|325969376|ref|YP_004245568.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.1 gi|325969376|ref|YP_004245568.1| - 0.18 12.6 1.9 0.74 10.6 1.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|325969377|ref|YP_004245569.1| - 5.9e-20 71.8 0.0 3.9e-10 39.6 0.0 2.3 1 1 1 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|325969377|ref|YP_004245569.1| - 1.7e-07 31.3 0.0 1e-06 28.7 0.1 2.3 1 1 1 2 2 2 1 Domain of unknown function DUF87 AAA_22 PF13401.1 gi|325969377|ref|YP_004245569.1| - 9.8e-06 25.7 0.1 0.0065 16.6 0.0 2.7 1 1 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.4 gi|325969377|ref|YP_004245569.1| - 1.4e-05 23.9 0.0 0.00024 19.8 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|325969377|ref|YP_004245569.1| - 3.3e-05 23.4 0.0 7.6e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|325969377|ref|YP_004245569.1| - 0.00035 20.9 0.1 0.0012 19.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain ResIII PF04851.10 gi|325969377|ref|YP_004245569.1| - 0.00038 20.3 0.0 0.014 15.1 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.24 gi|325969377|ref|YP_004245569.1| - 0.00085 19.5 0.0 0.01 16.0 0.0 3.0 4 1 0 4 4 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|325969377|ref|YP_004245569.1| - 0.001 19.0 0.1 0.0029 17.6 0.0 1.8 2 0 0 2 2 1 1 AAA ATPase domain PhoH PF02562.11 gi|325969377|ref|YP_004245569.1| - 0.0014 17.9 0.3 0.0058 15.8 0.1 2.1 2 1 0 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.12 gi|325969377|ref|YP_004245569.1| - 0.0023 17.3 0.0 0.0054 16.1 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|325969377|ref|YP_004245569.1| - 0.0024 17.2 0.0 0.0072 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|325969377|ref|YP_004245569.1| - 0.0031 16.5 0.3 0.0073 15.3 0.1 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus ABC_tran PF00005.22 gi|325969377|ref|YP_004245569.1| - 0.006 16.8 0.8 0.012 15.9 0.0 1.8 2 0 0 2 2 1 1 ABC transporter AAA_17 PF13207.1 gi|325969377|ref|YP_004245569.1| - 0.0076 17.0 0.0 0.064 14.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|325969377|ref|YP_004245569.1| - 0.009 15.6 0.0 0.032 13.8 0.0 1.9 2 0 0 2 2 2 1 NACHT domain SRP54 PF00448.17 gi|325969377|ref|YP_004245569.1| - 0.0093 15.4 0.1 0.03 13.7 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|325969377|ref|YP_004245569.1| - 0.01 15.5 0.1 0.046 13.4 0.1 2.1 1 0 0 1 1 1 0 Part of AAA domain Zot PF05707.7 gi|325969377|ref|YP_004245569.1| - 0.011 15.1 0.0 0.39 10.1 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_29 PF13555.1 gi|325969377|ref|YP_004245569.1| - 0.012 15.0 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|325969377|ref|YP_004245569.1| - 0.022 14.4 0.0 0.06 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|325969377|ref|YP_004245569.1| - 0.024 14.5 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|325969377|ref|YP_004245569.1| - 0.028 14.1 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|325969377|ref|YP_004245569.1| - 0.032 13.1 0.0 0.067 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DEAD PF00270.24 gi|325969377|ref|YP_004245569.1| - 0.052 13.0 0.0 2 7.8 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|325969377|ref|YP_004245569.1| - 0.07 13.4 0.2 0.24 11.6 0.0 2.0 2 0 0 2 2 1 0 AAA domain DUF2075 PF09848.4 gi|325969377|ref|YP_004245569.1| - 0.097 11.6 0.0 1.5 7.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF853 PF05872.7 gi|325969377|ref|YP_004245569.1| - 0.11 10.8 0.1 4.7 5.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) AAA_11 PF13086.1 gi|325969377|ref|YP_004245569.1| - 0.14 11.6 0.0 0.45 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|325969377|ref|YP_004245569.1| - 0.15 11.8 0.3 0.67 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AdoMet_dc PF02675.10 gi|325969378|ref|YP_004245570.1| - 1.1e-33 115.2 0.1 1.3e-33 115.0 0.1 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SIS PF01380.17 gi|325969379|ref|YP_004245571.1| - 1.3e-18 66.8 0.0 2.1e-18 66.1 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|325969379|ref|YP_004245571.1| - 1.5e-11 44.1 3.0 6.4e-07 29.1 0.6 2.3 1 1 1 2 2 2 2 SIS domain Abhydrolase_1 PF00561.15 gi|325969379|ref|YP_004245571.1| - 0.093 12.2 1.6 2.2 7.7 0.5 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold PRMT5 PF05185.11 gi|325969379|ref|YP_004245571.1| - 0.6 8.9 1.9 0.91 8.3 0.1 1.9 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase PhoH PF02562.11 gi|325969380|ref|YP_004245572.1| - 1.5e-48 164.7 0.0 1.9e-48 164.4 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_5 PF13184.1 gi|325969380|ref|YP_004245572.1| - 1.6e-07 31.0 0.5 0.00013 21.7 0.0 2.6 2 0 0 2 2 2 2 NusA-like KH domain KH_2 PF07650.12 gi|325969380|ref|YP_004245572.1| - 1.6e-06 27.5 4.1 3.2e-06 26.6 1.2 2.3 1 1 1 2 2 2 1 KH domain KH_1 PF00013.24 gi|325969380|ref|YP_004245572.1| - 2.5e-05 23.8 1.9 0.00012 21.6 0.2 2.4 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|325969380|ref|YP_004245572.1| - 0.0012 18.4 0.9 0.004 16.7 0.3 2.1 2 0 0 2 2 2 1 KH domain AAA_30 PF13604.1 gi|325969380|ref|YP_004245572.1| - 0.0051 16.4 0.0 0.056 13.0 0.0 2.3 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|325969380|ref|YP_004245572.1| - 0.0074 15.7 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.22 gi|325969380|ref|YP_004245572.1| - 0.052 13.8 0.3 0.13 12.6 0.2 1.9 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.1 gi|325969380|ref|YP_004245572.1| - 0.09 12.9 0.7 0.46 10.6 0.5 2.1 1 1 0 1 1 1 0 AAA domain KH_4 PF13083.1 gi|325969380|ref|YP_004245572.1| - 0.14 11.8 1.8 0.35 10.5 0.6 2.2 2 1 0 2 2 2 0 KH domain AAA_17 PF13207.1 gi|325969380|ref|YP_004245572.1| - 2.4 9.0 4.3 18 6.1 3.0 2.5 1 1 0 1 1 1 0 AAA domain Lysine_decarbox PF03641.9 gi|325969381|ref|YP_004245573.1| - 3e-06 27.0 0.0 4.4e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|325969381|ref|YP_004245573.1| - 0.0021 17.9 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase NOG1 PF06858.9 gi|325969382|ref|YP_004245574.1| - 4e-20 71.4 0.1 8e-20 70.4 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|325969382|ref|YP_004245574.1| - 3.5e-17 62.4 0.1 7.1e-17 61.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|325969382|ref|YP_004245574.1| - 2e-12 46.6 0.2 2.9e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|325969382|ref|YP_004245574.1| - 1.2e-06 29.0 0.0 1.9e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|325969382|ref|YP_004245574.1| - 0.00077 18.7 0.1 0.0018 17.5 0.0 1.7 1 1 0 1 1 1 1 ADP-ribosylation factor family Gtr1_RagA PF04670.7 gi|325969382|ref|YP_004245574.1| - 0.0011 18.2 0.1 0.0019 17.3 0.0 1.4 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region PduV-EutP PF10662.4 gi|325969382|ref|YP_004245574.1| - 0.0019 17.7 0.0 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Ras PF00071.17 gi|325969382|ref|YP_004245574.1| - 0.0026 17.1 0.0 0.0063 15.9 0.0 1.6 1 1 0 1 1 1 1 Ras family AIG1 PF04548.11 gi|325969382|ref|YP_004245574.1| - 0.0038 16.3 0.0 0.0063 15.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family cobW PF02492.14 gi|325969382|ref|YP_004245574.1| - 0.014 14.8 0.1 0.027 13.9 0.1 1.5 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|325969382|ref|YP_004245574.1| - 0.017 14.3 0.4 0.031 13.4 0.0 1.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF258 PF03193.11 gi|325969382|ref|YP_004245574.1| - 0.031 13.4 0.0 0.063 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|325969382|ref|YP_004245574.1| - 0.033 14.0 1.6 0.7 9.6 0.1 2.3 1 1 1 2 2 2 0 Dynamin family ATP_bind_1 PF03029.12 gi|325969382|ref|YP_004245574.1| - 0.034 13.6 0.6 1.2 8.6 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF998 PF06197.8 gi|325969383|ref|YP_004245575.1| - 1.2e-25 89.8 24.5 1.5e-25 89.5 17.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.4 gi|325969383|ref|YP_004245575.1| - 0.17 11.3 11.2 2.4 7.5 7.7 2.4 1 1 1 2 2 2 0 Frag1/DRAM/Sfk1 family DUF2530 PF10745.4 gi|325969383|ref|YP_004245575.1| - 2.2 8.3 6.0 2.7 8.0 3.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) Antitoxin-MazE PF04014.13 gi|325969384|ref|YP_004245576.1| - 1.7e-09 37.2 0.6 1.3e-07 31.2 0.0 2.4 2 1 0 2 2 2 2 Antidote-toxin recognition MazE DUF2079 PF09852.4 gi|325969385|ref|YP_004245577.1| - 1.8e-57 195.1 40.8 1.8e-57 195.1 28.3 1.6 2 0 0 2 2 2 1 Predicted membrane protein (DUF2079) Metallophos_2 PF12850.2 gi|325969386|ref|YP_004245578.1| - 3.4e-08 33.4 0.0 5.1e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|325969386|ref|YP_004245578.1| - 2.6e-07 30.2 0.0 3.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase NSs PF11073.3 gi|325969386|ref|YP_004245578.1| - 0.12 11.6 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Rift valley fever virus non structural protein (NSs) like Pyr_redox_2 PF07992.9 gi|325969387|ref|YP_004245579.1| - 2.4e-10 40.6 0.1 4.7e-10 39.6 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|325969387|ref|YP_004245579.1| - 5e-06 26.8 5.0 0.011 16.0 0.6 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|325969387|ref|YP_004245579.1| - 4.7e-05 23.1 0.5 0.0051 16.6 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding DAO PF01266.19 gi|325969387|ref|YP_004245579.1| - 0.0036 16.2 1.9 0.0036 16.2 1.3 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|325969387|ref|YP_004245579.1| - 0.0041 15.8 0.9 0.0046 15.6 0.2 1.4 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|325969387|ref|YP_004245579.1| - 0.0077 16.2 0.1 0.016 15.2 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|325969387|ref|YP_004245579.1| - 0.025 14.8 0.2 0.054 13.7 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|325969387|ref|YP_004245579.1| - 0.032 13.3 0.6 0.062 12.3 0.2 1.6 2 0 0 2 2 2 0 FAD binding domain FAD_binding_2 PF00890.19 gi|325969387|ref|YP_004245579.1| - 0.033 13.0 1.2 0.062 12.1 0.5 1.6 2 0 0 2 2 2 0 FAD binding domain K_oxygenase PF13434.1 gi|325969387|ref|YP_004245579.1| - 0.061 12.2 0.1 0.16 10.8 0.0 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.13 gi|325969387|ref|YP_004245579.1| - 0.093 12.7 0.9 0.34 10.9 0.7 2.0 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_3 PF13738.1 gi|325969387|ref|YP_004245579.1| - 0.48 10.4 1.9 2.8 7.9 0.2 2.8 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase DUF1290 PF06947.7 gi|325969389|ref|YP_004245581.1| - 0.15 12.0 19.7 0.14 12.0 1.5 3.3 1 1 1 3 3 3 0 Protein of unknown function (DUF1290) MFS_2 PF13347.1 gi|325969389|ref|YP_004245581.1| - 0.47 8.7 23.7 0.26 9.6 4.4 2.2 1 1 1 2 2 2 0 MFS/sugar transport protein MFS_1 PF07690.11 gi|325969389|ref|YP_004245581.1| - 2.4 6.7 28.6 4.3 5.9 19.8 1.4 1 0 0 1 1 1 0 Major Facilitator Superfamily Lactamase_B PF00753.22 gi|325969390|ref|YP_004245582.1| - 4.8e-30 104.6 0.5 6e-30 104.3 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|325969390|ref|YP_004245582.1| - 4.9e-06 26.2 0.0 6.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Cys_Met_Meta_PP PF01053.15 gi|325969391|ref|YP_004245583.1| - 7.3e-123 409.6 0.0 8.3e-123 409.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|325969391|ref|YP_004245583.1| - 1.4e-07 30.5 0.0 2.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|325969391|ref|YP_004245583.1| - 1e-05 24.7 0.0 1.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|325969391|ref|YP_004245583.1| - 0.00065 18.8 0.0 0.0039 16.2 0.0 2.2 4 0 0 4 4 4 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|325969391|ref|YP_004245583.1| - 0.026 13.6 0.0 5.5 6.0 0.0 2.4 2 0 0 2 2 2 0 Beta-eliminating lyase NmrA PF05368.8 gi|325969391|ref|YP_004245583.1| - 0.031 13.5 0.0 0.051 12.8 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Met_gamma_lyase PF06838.6 gi|325969391|ref|YP_004245583.1| - 0.1 10.9 0.4 1.1 7.5 0.1 2.0 2 0 0 2 2 2 0 Methionine gamma-lyase P5CR_dimer PF14748.1 gi|325969392|ref|YP_004245584.1| - 1.7e-28 98.7 0.0 2.9e-28 97.9 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|325969392|ref|YP_004245584.1| - 4.1e-19 68.7 0.5 8.2e-19 67.8 0.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|325969392|ref|YP_004245584.1| - 1.6e-10 40.9 0.3 3.4e-10 39.8 0.2 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|325969392|ref|YP_004245584.1| - 1.1e-08 34.6 0.3 1.8e-08 33.9 0.2 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|325969392|ref|YP_004245584.1| - 1.1e-06 28.5 0.1 1.1e-05 25.3 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|325969392|ref|YP_004245584.1| - 0.00025 21.0 0.4 0.00039 20.4 0.2 1.4 1 1 0 1 1 1 1 NADH(P)-binding IlvN PF07991.7 gi|325969392|ref|YP_004245584.1| - 0.0018 17.6 0.1 0.0028 17.0 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|325969392|ref|YP_004245584.1| - 0.0032 17.4 0.1 0.0057 16.6 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Shikimate_DH PF01488.15 gi|325969392|ref|YP_004245584.1| - 0.0038 17.3 0.2 0.0061 16.6 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|325969392|ref|YP_004245584.1| - 0.0047 16.1 0.1 0.0085 15.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|325969392|ref|YP_004245584.1| - 0.0083 15.9 1.2 0.03 14.1 0.1 2.0 1 1 1 2 2 2 1 ThiF family PDH PF02153.12 gi|325969392|ref|YP_004245584.1| - 0.0088 14.9 0.3 0.012 14.5 0.2 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase GFO_IDH_MocA PF01408.17 gi|325969392|ref|YP_004245584.1| - 0.022 15.2 0.0 0.036 14.5 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|325969392|ref|YP_004245584.1| - 0.044 13.7 0.2 0.093 12.6 0.1 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Metallophos_2 PF12850.2 gi|325969393|ref|YP_004245585.1| - 1.8e-06 27.8 0.6 5.1e-06 26.4 0.4 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DNA_pol_E_B PF04042.11 gi|325969393|ref|YP_004245585.1| - 0.072 12.3 0.1 0.098 11.8 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase alpha/epsilon subunit B DUF1538 PF07556.6 gi|325969393|ref|YP_004245585.1| - 0.091 11.8 0.0 0.2 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1538) Metallophos PF00149.23 gi|325969393|ref|YP_004245585.1| - 0.38 10.1 3.2 0.63 9.3 0.4 2.4 2 1 0 2 2 2 0 Calcineurin-like phosphoesterase OrfB_Zn_ribbon PF07282.6 gi|325969394|ref|YP_004245586.1| - 1.4e-10 40.7 0.0 4.3e-10 39.0 0.0 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|325969394|ref|YP_004245586.1| - 0.014 15.1 2.7 0.1 12.2 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|325969394|ref|YP_004245586.1| - 0.018 14.8 0.3 0.031 14.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|325969394|ref|YP_004245586.1| - 0.026 14.0 0.4 0.048 13.1 0.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain FGase PF05013.7 gi|325969394|ref|YP_004245586.1| - 0.034 14.0 0.0 0.088 12.6 0.0 1.6 2 0 0 2 2 2 0 N-formylglutamate amidohydrolase Auto_anti-p27 PF06677.7 gi|325969394|ref|YP_004245586.1| - 0.12 12.1 2.2 0.22 11.3 1.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|325969394|ref|YP_004245586.1| - 0.18 11.5 0.3 0.29 10.9 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RPA_interact_C PF14768.1 gi|325969394|ref|YP_004245586.1| - 0.2 12.0 0.8 0.37 11.2 0.5 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal YhfH PF14149.1 gi|325969394|ref|YP_004245586.1| - 0.33 10.7 2.5 2.4 8.0 1.5 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-C4_Topoisom PF01396.14 gi|325969394|ref|YP_004245586.1| - 0.64 9.5 4.2 4.2 6.9 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|325969394|ref|YP_004245586.1| - 1.3 9.0 3.1 32 4.5 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|325969394|ref|YP_004245586.1| - 1.7 8.2 6.0 20 4.8 4.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|325969394|ref|YP_004245586.1| - 2.4 7.4 5.6 14 5.0 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|325969394|ref|YP_004245586.1| - 4.6 6.9 7.5 7 6.3 0.2 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) DUF1626 PF07788.6 gi|325969395|ref|YP_004245587.1| - 2e-23 81.9 1.7 2.5e-23 81.6 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|325969395|ref|YP_004245587.1| - 6.7e-05 22.5 0.0 0.00015 21.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3782) DUF1967 PF09269.6 gi|325969395|ref|YP_004245587.1| - 0.12 12.0 0.0 0.3 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) DUF996 PF06195.8 gi|325969396|ref|YP_004245588.1| - 4e-15 56.0 29.0 1.6e-12 47.6 20.1 2.3 1 1 0 1 1 1 1 Protein of unknown function (DUF996) ABC2_membrane_3 PF12698.2 gi|325969396|ref|YP_004245588.1| - 2.5 7.0 31.7 3.4 6.5 21.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1218 PF06749.7 gi|325969396|ref|YP_004245588.1| - 3.5 8.1 8.6 35 4.9 0.1 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1218) PaREP1 PF05942.6 gi|325969397|ref|YP_004245589.1| - 5.8e-25 87.3 0.3 8.2e-25 86.9 0.1 1.3 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family CbiC PF02570.10 gi|325969397|ref|YP_004245589.1| - 0.16 11.4 0.0 0.2 11.0 0.0 1.1 1 0 0 1 1 1 0 Precorrin-8X methylmutase Aldo_ket_red PF00248.16 gi|325969398|ref|YP_004245590.1| - 9.7e-13 47.5 0.1 1.2e-12 47.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Tho2 PF11262.3 gi|325969398|ref|YP_004245590.1| - 0.048 12.7 0.0 0.057 12.4 0.0 1.0 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Ead_Ea22 PF13935.1 gi|325969399|ref|YP_004245591.1| - 0.31 11.3 2.7 0.24 11.7 0.2 2.1 2 1 0 2 2 2 0 Ead/Ea22-like protein GrpE PF01025.14 gi|325969399|ref|YP_004245591.1| - 0.77 9.2 4.2 3.4 7.1 2.9 2.1 1 1 0 1 1 1 0 GrpE PaREP1 PF05942.6 gi|325969399|ref|YP_004245591.1| - 1.1 9.1 9.4 0.09 12.6 1.6 2.8 3 0 0 3 3 3 0 Archaeal PaREP1/PaREP8 family zf-C4H2 PF10146.4 gi|325969399|ref|YP_004245591.1| - 1.3 8.9 8.3 0.3 11.0 3.1 1.8 2 0 0 2 2 2 0 Zinc finger-containing protein Crl PF07417.7 gi|325969401|ref|YP_004245593.1| - 0.072 12.8 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Crl Aldo_ket_red PF00248.16 gi|325969402|ref|YP_004245594.1| - 1.1e-18 67.0 0.0 1.4e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Lyase_aromatic PF00221.14 gi|325969402|ref|YP_004245594.1| - 1.3e-06 27.2 0.0 1.7e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 Aromatic amino acid lyase PIN PF01850.16 gi|325969403|ref|YP_004245595.1| - 0.0013 19.0 0.0 0.0015 18.8 0.0 1.2 1 0 0 1 1 1 1 PIN domain Y1_Tnp PF01797.11 gi|325969404|ref|YP_004245596.1| - 7.2e-37 125.9 0.0 8.1e-37 125.7 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.14 gi|325969405|ref|YP_004245597.1| - 5e-66 222.3 0.8 6.7e-66 221.9 0.5 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|325969405|ref|YP_004245597.1| - 3.5e-16 58.6 0.1 6.4e-16 57.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain UPF0081 PF03652.10 gi|325969405|ref|YP_004245597.1| - 0.034 14.2 0.0 0.073 13.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) Lipase_GDSL_2 PF13472.1 gi|325969405|ref|YP_004245597.1| - 0.13 12.4 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family CcdA PF07362.7 gi|325969406|ref|YP_004245598.1| - 5.6e-05 22.9 0.9 7.9e-05 22.4 0.5 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|325969406|ref|YP_004245598.1| - 0.02 14.7 2.1 0.02 14.7 1.5 2.9 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.6 gi|325969406|ref|YP_004245598.1| - 0.035 14.7 2.2 0.051 14.2 1.5 1.4 1 1 0 1 1 1 0 Rv0623-like transcription factor Ran-binding PF05508.6 gi|325969406|ref|YP_004245598.1| - 0.037 12.9 0.7 0.043 12.7 0.5 1.0 1 0 0 1 1 1 0 RanGTP-binding protein KaiC PF06745.8 gi|325969406|ref|YP_004245598.1| - 0.041 12.9 0.6 0.051 12.6 0.4 1.0 1 0 0 1 1 1 0 KaiC PI3K_rbd PF00794.13 gi|325969406|ref|YP_004245598.1| - 0.059 13.3 0.0 0.074 12.9 0.0 1.1 1 0 0 1 1 1 0 PI3-kinase family, ras-binding domain CCDC14 PF15254.1 gi|325969406|ref|YP_004245598.1| - 0.1 10.9 1.4 0.1 10.9 1.0 1.0 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 14 DUF2017 PF09438.5 gi|325969406|ref|YP_004245598.1| - 0.12 11.9 0.8 0.16 11.5 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2017) YtxH PF12732.2 gi|325969406|ref|YP_004245598.1| - 0.14 12.5 0.5 0.18 12.1 0.4 1.3 1 0 0 1 1 1 0 YtxH-like protein TPP_enzyme_C PF02775.16 gi|325969410|ref|YP_004245602.1| - 1.1e-31 109.5 0.1 2.1e-31 108.5 0.1 1.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|325969410|ref|YP_004245602.1| - 9.8e-14 51.0 0.1 1.4e-12 47.3 0.1 2.2 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 2_5_RNA_ligase2 PF13563.1 gi|325969411|ref|YP_004245603.1| - 5.5e-10 39.1 0.0 6.4e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|325969411|ref|YP_004245603.1| - 1.3e-05 25.0 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|325969411|ref|YP_004245603.1| - 6.2e-05 22.7 0.0 0.0002 21.1 0.0 1.7 2 0 0 2 2 2 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.7 gi|325969411|ref|YP_004245603.1| - 0.0015 17.8 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NS2A protein CPDase PF07823.6 gi|325969411|ref|YP_004245603.1| - 0.008 15.6 0.0 0.0089 15.5 0.0 1.2 1 0 0 1 1 1 1 Cyclic phosphodiesterase-like protein IstB_IS21 PF01695.12 gi|325969414|ref|YP_004245606.1| - 0.00028 20.3 0.3 0.045 13.1 0.0 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|325969414|ref|YP_004245606.1| - 0.00037 20.6 1.1 0.018 15.1 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_21 PF13304.1 gi|325969414|ref|YP_004245606.1| - 0.00062 19.8 0.6 0.0026 17.7 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|325969414|ref|YP_004245606.1| - 0.00072 19.2 0.1 0.0016 18.1 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|325969414|ref|YP_004245606.1| - 0.0044 17.8 0.4 0.0096 16.7 0.3 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|325969414|ref|YP_004245606.1| - 0.0054 16.4 0.1 0.89 9.1 0.0 2.7 2 1 0 3 3 3 1 NACHT domain AAA_18 PF13238.1 gi|325969414|ref|YP_004245606.1| - 0.013 15.8 0.1 0.021 15.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|325969414|ref|YP_004245606.1| - 0.014 15.7 0.4 0.075 13.3 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|325969414|ref|YP_004245606.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|325969414|ref|YP_004245606.1| - 0.025 14.0 0.0 0.059 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|325969414|ref|YP_004245606.1| - 0.026 14.4 0.1 1 9.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|325969414|ref|YP_004245606.1| - 0.039 13.4 0.2 0.06 12.8 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.24 gi|325969414|ref|YP_004245606.1| - 0.041 14.0 0.7 0.073 13.2 0.1 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|325969414|ref|YP_004245606.1| - 0.041 13.8 0.2 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|325969414|ref|YP_004245606.1| - 0.046 13.6 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|325969414|ref|YP_004245606.1| - 0.053 13.2 0.0 1.6 8.3 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase Guanylate_kin PF00625.16 gi|325969414|ref|YP_004245606.1| - 0.058 12.8 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 Guanylate kinase AAA_30 PF13604.1 gi|325969414|ref|YP_004245606.1| - 0.08 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|325969414|ref|YP_004245606.1| - 0.081 12.3 0.2 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|325969414|ref|YP_004245606.1| - 0.083 12.4 0.0 0.31 10.6 0.0 2.0 3 0 0 3 3 3 0 AAA domain Mg_chelatase PF01078.16 gi|325969414|ref|YP_004245606.1| - 0.11 11.7 0.1 0.23 10.6 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|325969414|ref|YP_004245606.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|325969414|ref|YP_004245606.1| - 0.13 11.6 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiZ PF01955.13 gi|325969415|ref|YP_004245607.1| - 1.6e-38 132.4 2.0 1.8e-38 132.2 1.4 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase ABC_tran PF00005.22 gi|325969416|ref|YP_004245608.1| - 3.2e-24 85.7 0.0 4.4e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325969416|ref|YP_004245608.1| - 3.3e-15 56.8 0.0 5.3e-11 43.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|325969416|ref|YP_004245608.1| - 2.7e-05 23.5 0.0 8.4e-05 21.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|325969416|ref|YP_004245608.1| - 0.00075 19.5 0.1 0.0015 18.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|325969416|ref|YP_004245608.1| - 0.00079 19.1 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|325969416|ref|YP_004245608.1| - 0.00098 18.6 0.3 0.39 10.1 0.1 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|325969416|ref|YP_004245608.1| - 0.0035 17.2 0.0 0.025 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|325969416|ref|YP_004245608.1| - 0.0039 17.0 0.0 0.017 15.0 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|325969416|ref|YP_004245608.1| - 0.0045 17.3 0.0 0.0068 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|325969416|ref|YP_004245608.1| - 0.0061 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|325969416|ref|YP_004245608.1| - 0.0095 15.8 0.0 0.043 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF4162 PF13732.1 gi|325969416|ref|YP_004245608.1| - 0.014 15.8 0.0 0.026 15.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) UPF0079 PF02367.12 gi|325969416|ref|YP_004245608.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NB-ARC PF00931.17 gi|325969416|ref|YP_004245608.1| - 0.019 13.8 0.0 0.041 12.7 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA PF00004.24 gi|325969416|ref|YP_004245608.1| - 0.02 15.0 0.0 0.051 13.7 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|325969416|ref|YP_004245608.1| - 0.028 14.9 0.0 0.045 14.2 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein AAA_22 PF13401.1 gi|325969416|ref|YP_004245608.1| - 0.029 14.4 0.1 0.09 12.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|325969416|ref|YP_004245608.1| - 0.033 13.7 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|325969416|ref|YP_004245608.1| - 0.04 13.4 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|325969416|ref|YP_004245608.1| - 0.04 13.3 0.0 0.078 12.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|325969416|ref|YP_004245608.1| - 0.048 13.4 0.0 0.68 9.7 0.0 2.6 2 0 0 2 2 2 0 Part of AAA domain MobB PF03205.9 gi|325969416|ref|YP_004245608.1| - 0.048 13.3 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|325969416|ref|YP_004245608.1| - 0.051 13.2 0.1 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_15 PF13175.1 gi|325969416|ref|YP_004245608.1| - 0.057 12.4 0.0 1.9 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|325969416|ref|YP_004245608.1| - 0.057 13.7 0.2 1.8 8.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|325969416|ref|YP_004245608.1| - 0.068 12.5 0.1 0.29 10.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain DUF1341 PF07071.6 gi|325969416|ref|YP_004245608.1| - 0.073 12.5 0.0 0.16 11.4 0.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF1341) SRP54 PF00448.17 gi|325969416|ref|YP_004245608.1| - 0.092 12.1 0.1 1.7 8.0 0.1 2.1 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|325969416|ref|YP_004245608.1| - 0.1 11.7 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 DUF3584 PF12128.3 gi|325969416|ref|YP_004245608.1| - 0.11 9.7 0.0 0.14 9.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MutS_V PF00488.16 gi|325969416|ref|YP_004245608.1| - 0.12 11.7 0.0 0.6 9.4 0.0 1.9 2 0 0 2 2 2 0 MutS domain V IstB_IS21 PF01695.12 gi|325969416|ref|YP_004245608.1| - 0.15 11.4 0.0 12 5.2 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein PIF1 PF05970.9 gi|325969416|ref|YP_004245608.1| - 0.15 11.0 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase ABC2_membrane PF01061.19 gi|325969417|ref|YP_004245609.1| - 1.9e-13 50.1 24.5 3e-13 49.4 17.0 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|325969417|ref|YP_004245609.1| - 4.1e-11 42.5 23.9 4.1e-11 42.5 16.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein Pox_P21 PF05313.7 gi|325969417|ref|YP_004245609.1| - 4.6 6.4 9.4 8.3 5.6 0.4 2.2 1 1 1 2 2 2 0 Poxvirus P21 membrane protein HTH_20 PF12840.2 gi|325969418|ref|YP_004245610.1| - 3.9e-11 42.5 0.1 6.4e-11 41.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|325969418|ref|YP_004245610.1| - 9.3e-09 34.8 0.1 1.6e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|325969418|ref|YP_004245610.1| - 0.00034 20.2 0.3 0.00063 19.3 0.0 1.6 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|325969418|ref|YP_004245610.1| - 0.00078 19.1 0.1 0.0012 18.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|325969418|ref|YP_004245610.1| - 0.0029 16.9 0.2 0.011 15.0 0.0 2.0 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Plexin_cytopl PF08337.7 gi|325969418|ref|YP_004245610.1| - 0.11 10.7 0.0 0.13 10.5 0.0 1.1 1 0 0 1 1 1 0 Plexin cytoplasmic RasGAP domain IncA PF04156.9 gi|325969419|ref|YP_004245611.1| - 0.0045 16.6 0.0 0.0059 16.2 0.0 1.2 1 0 0 1 1 1 1 IncA protein DUF948 PF06103.6 gi|325969419|ref|YP_004245611.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1049 PF06305.6 gi|325969419|ref|YP_004245611.1| - 1.8 8.0 5.0 3 7.3 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) DUF86 PF01934.12 gi|325969420|ref|YP_004245612.1| - 0.055 13.1 0.0 0.064 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF86 Nebulin PF00880.13 gi|325969420|ref|YP_004245612.1| - 0.081 12.5 0.2 0.59 9.8 0.0 2.0 2 0 0 2 2 2 0 Nebulin repeat RBD PF02196.10 gi|325969421|ref|YP_004245613.1| - 0.085 12.6 0.3 1.5 8.6 0.2 2.3 2 0 0 2 2 2 0 Raf-like Ras-binding domain Pentapeptide_4 PF13599.1 gi|325969421|ref|YP_004245613.1| - 0.16 11.7 0.0 0.69 9.7 0.0 1.9 1 1 0 1 1 1 0 Pentapeptide repeats (9 copies) OCD_Mu_crystall PF02423.10 gi|325969422|ref|YP_004245614.1| - 1.5e-65 221.0 0.7 2.2e-65 220.4 0.5 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|325969422|ref|YP_004245614.1| - 2.3e-07 30.9 0.0 3.6e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|325969422|ref|YP_004245614.1| - 0.0043 17.5 0.0 0.0092 16.4 0.0 1.5 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|325969422|ref|YP_004245614.1| - 0.013 15.9 0.2 0.046 14.1 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NTP_transf_3 PF12804.2 gi|325969424|ref|YP_004245616.1| - 5.8e-40 136.9 0.0 7.3e-40 136.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|325969424|ref|YP_004245616.1| - 1.1e-07 31.0 0.1 2.1e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Guanylyl transferase CofC like IspD PF01128.14 gi|325969424|ref|YP_004245616.1| - 7.6e-07 28.8 0.0 1.2e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2840 PF11000.3 gi|325969424|ref|YP_004245616.1| - 0.014 14.9 0.0 0.81 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2840) SNARE_assoc PF09335.6 gi|325969426|ref|YP_004245618.1| - 9.4e-20 71.0 11.3 9.4e-20 71.0 7.8 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein DUF3980 PF13140.1 gi|325969426|ref|YP_004245618.1| - 1.2 9.4 7.6 1.9 8.7 5.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3980) dsDNA_bind PF01984.15 gi|325969427|ref|YP_004245619.1| - 0.007 16.3 4.0 0.046 13.7 2.8 2.1 1 1 0 1 1 1 1 Double-stranded DNA-binding domain GvpG PF05120.7 gi|325969427|ref|YP_004245619.1| - 0.55 10.0 2.9 5.3 6.9 0.2 2.2 1 1 1 2 2 2 0 Gas vesicle protein G Antitoxin-MazE PF04014.13 gi|325969429|ref|YP_004245621.1| - 1.8e-09 37.0 1.2 1.8e-09 37.0 0.8 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|325969430|ref|YP_004245622.1| - 5.9e-10 39.5 2.7 3.5e-05 24.1 0.1 2.1 1 1 1 2 2 2 2 PIN domain DUF1938 PF09153.5 gi|325969430|ref|YP_004245622.1| - 0.12 12.2 0.6 0.51 10.1 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1938) Arch_ATPase PF01637.13 gi|325969432|ref|YP_004245624.1| - 1.1e-07 31.7 0.0 1.3e-07 31.5 0.0 1.0 1 0 0 1 1 1 1 Archaeal ATPase TPR_17 PF13431.1 gi|325969432|ref|YP_004245624.1| - 0.023 14.8 0.0 0.037 14.2 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_22 PF13401.1 gi|325969432|ref|YP_004245624.1| - 0.028 14.5 0.1 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain PaREP1 PF05942.6 gi|325969433|ref|YP_004245625.1| - 9.3e-20 70.6 0.0 1.4e-19 70.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF2095 PF09868.4 gi|325969433|ref|YP_004245625.1| - 0.0028 17.4 0.1 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) DUF3969 PF13108.1 gi|325969433|ref|YP_004245625.1| - 0.032 13.8 0.1 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3969) DUF86 PF01934.12 gi|325969435|ref|YP_004245627.1| - 0.00031 20.3 0.1 0.00032 20.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Antitoxin-MazE PF04014.13 gi|325969436|ref|YP_004245628.1| - 0.00027 20.5 0.1 0.0025 17.4 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE DUF137 PF02006.11 gi|325969439|ref|YP_004245631.1| - 1.6e-80 268.6 1.5 2e-80 268.4 1.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DUF1852 PF08908.6 gi|325969439|ref|YP_004245631.1| - 0.039 12.7 0.5 0.057 12.1 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1852) AviRa PF11599.3 gi|325969439|ref|YP_004245631.1| - 0.085 11.8 0.1 0.11 11.4 0.0 1.1 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Radical_SAM PF04055.16 gi|325969439|ref|YP_004245631.1| - 0.086 13.0 0.1 0.17 12.0 0.0 1.5 1 1 0 1 1 1 0 Radical SAM superfamily GHMP_kinases_N PF00288.21 gi|325969440|ref|YP_004245632.1| - 1.7e-05 24.7 1.7 2.7e-05 24.1 1.2 1.3 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.6 gi|325969440|ref|YP_004245632.1| - 0.04 13.6 1.2 0.084 12.6 0.9 1.4 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus Toxin_47 PF15527.1 gi|325969440|ref|YP_004245632.1| - 0.066 12.9 0.2 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 Putative toxin 47 Fer4_14 PF13394.1 gi|325969441|ref|YP_004245633.1| - 1.3e-14 54.2 0.0 2.2e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|325969441|ref|YP_004245633.1| - 2e-14 54.0 0.0 2.4e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|325969441|ref|YP_004245633.1| - 7.5e-08 32.5 0.0 1.2e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain QueC PF06508.8 gi|325969442|ref|YP_004245634.1| - 3.4e-55 186.5 0.0 4.5e-55 186.1 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.1 gi|325969442|ref|YP_004245634.1| - 2.7e-13 49.7 0.0 4.9e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|325969442|ref|YP_004245634.1| - 3.5e-11 43.2 0.0 7.1e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.9 gi|325969442|ref|YP_004245634.1| - 8e-07 28.7 0.0 4e-06 26.4 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|325969442|ref|YP_004245634.1| - 0.00034 19.2 0.0 0.0015 17.1 0.0 1.9 2 1 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|325969442|ref|YP_004245634.1| - 0.00058 19.4 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family Asn_synthase PF00733.16 gi|325969442|ref|YP_004245634.1| - 0.0064 16.0 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP-grasp PF02222.17 gi|325969444|ref|YP_004245636.1| - 2.2e-49 167.1 0.1 3.1e-49 166.6 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325969444|ref|YP_004245636.1| - 3.4e-12 46.4 0.1 6.2e-12 45.6 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|325969444|ref|YP_004245636.1| - 3.5e-05 23.2 0.0 6.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.14 gi|325969444|ref|YP_004245636.1| - 3.8e-05 22.9 0.0 0.00046 19.3 0.0 2.1 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.12 gi|325969444|ref|YP_004245636.1| - 0.00074 18.8 0.1 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_Ter PF15632.1 gi|325969444|ref|YP_004245636.1| - 0.085 11.5 0.0 0.32 9.7 0.0 1.9 3 0 0 3 3 3 0 ATP-grasp in the biosynthetic pathway with Ter operon NAD_binding_2 PF03446.10 gi|325969444|ref|YP_004245636.1| - 0.1 12.3 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AIRC PF00731.15 gi|325969445|ref|YP_004245637.1| - 8.1e-68 226.4 0.4 9.1e-68 226.2 0.3 1.0 1 0 0 1 1 1 1 AIR carboxylase AIRS_C PF02769.17 gi|325969446|ref|YP_004245638.1| - 1.1e-45 155.3 0.5 9.5e-27 93.8 0.2 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|325969446|ref|YP_004245638.1| - 7.9e-37 125.3 0.1 2.7e-21 75.5 0.0 2.7 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain GATase_7 PF13537.1 gi|325969447|ref|YP_004245639.1| - 9.6e-20 70.5 0.0 1.5e-19 69.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|325969447|ref|YP_004245639.1| - 1.7e-18 66.8 0.0 3.2e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.22 gi|325969447|ref|YP_004245639.1| - 1.7e-08 34.2 0.3 4.2e-08 32.9 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_2 PF00310.16 gi|325969447|ref|YP_004245639.1| - 2.7e-07 29.6 0.0 0.00055 18.7 0.0 2.2 2 0 0 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|325969448|ref|YP_004245640.1| - 5.6e-18 64.8 0.8 9.7e-18 64.0 0.6 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|325969448|ref|YP_004245640.1| - 0.0017 17.6 0.0 0.0092 15.2 0.0 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase Apc4_WD40 PF12894.2 gi|325969448|ref|YP_004245640.1| - 0.036 13.5 0.0 1.2 8.6 0.0 2.6 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 4 WD40 domain AIRS_C PF02769.17 gi|325969449|ref|YP_004245641.1| - 6.3e-19 68.4 0.0 9e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|325969449|ref|YP_004245641.1| - 9e-12 45.0 0.2 2.4e-11 43.6 0.2 1.7 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain SAICAR_synt PF01259.13 gi|325969450|ref|YP_004245642.1| - 3.7e-54 183.4 0.1 4.6e-54 183.1 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase GARS_A PF01071.14 gi|325969451|ref|YP_004245643.1| - 3.9e-42 144.0 0.0 6.8e-42 143.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|325969451|ref|YP_004245643.1| - 3.5e-21 75.5 0.1 8e-21 74.3 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|325969451|ref|YP_004245643.1| - 1.2e-08 35.0 0.0 2.3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_Ter PF15632.1 gi|325969451|ref|YP_004245643.1| - 4e-06 25.8 0.0 5.6e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|325969451|ref|YP_004245643.1| - 1.5e-05 24.8 0.0 8.2e-05 22.4 0.0 2.2 1 1 1 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|325969451|ref|YP_004245643.1| - 0.003 17.4 0.0 0.028 14.2 0.0 2.5 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|325969451|ref|YP_004245643.1| - 0.046 13.0 0.0 0.088 12.0 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|325969452|ref|YP_004245644.1| - 1.1e-40 138.8 0.0 1.7e-40 138.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325969452|ref|YP_004245644.1| - 2.2e-21 76.4 0.0 3.9e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|325969452|ref|YP_004245644.1| - 1.2e-09 37.4 0.0 2.9e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|325969452|ref|YP_004245644.1| - 2.9e-09 36.6 0.0 6.1e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|325969452|ref|YP_004245644.1| - 1.1e-08 34.6 0.0 1.8e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Pyr_redox PF00070.22 gi|325969452|ref|YP_004245644.1| - 0.0019 18.5 0.4 0.65 10.4 0.1 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|325969452|ref|YP_004245644.1| - 0.0029 16.7 0.0 0.0051 15.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RimK PF08443.6 gi|325969452|ref|YP_004245644.1| - 0.0051 16.3 0.0 0.03 13.8 0.0 2.1 2 1 0 2 2 2 1 RimK-like ATP-grasp domain CPSase_L_chain PF00289.17 gi|325969452|ref|YP_004245644.1| - 0.0093 16.0 0.1 0.018 15.1 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain RmlD_sub_bind PF04321.12 gi|325969452|ref|YP_004245644.1| - 0.018 13.9 0.1 0.044 12.6 0.0 1.6 2 0 0 2 2 2 0 RmlD substrate binding domain 3HCDH_N PF02737.13 gi|325969452|ref|YP_004245644.1| - 0.037 13.6 0.2 0.066 12.8 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|325969452|ref|YP_004245644.1| - 0.047 13.5 0.1 0.078 12.8 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GATase_5 PF13507.1 gi|325969453|ref|YP_004245645.1| - 1.1e-36 126.0 0.0 1.5e-35 122.3 0.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|325969453|ref|YP_004245645.1| - 2.5e-07 30.3 0.0 4.7e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|325969453|ref|YP_004245645.1| - 3e-06 26.8 0.0 5.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|325969453|ref|YP_004245645.1| - 6.5e-06 25.6 0.0 9.4e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|325969453|ref|YP_004245645.1| - 0.0014 17.9 0.0 0.0019 17.4 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase Peptidase_C26 PF07722.8 gi|325969453|ref|YP_004245645.1| - 0.0053 16.2 0.0 0.01 15.2 0.0 1.4 2 0 0 2 2 2 1 Peptidase C26 PurS PF02700.9 gi|325969454|ref|YP_004245646.1| - 2.7e-11 43.2 0.0 3.2e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF1297 PF06973.7 gi|325969455|ref|YP_004245647.1| - 9.8e-63 210.8 0.3 1.5e-62 210.3 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|325969455|ref|YP_004245647.1| - 3.9e-40 136.4 0.0 6e-40 135.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|325969455|ref|YP_004245647.1| - 2.7e-05 23.9 0.0 6.6e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|325969455|ref|YP_004245647.1| - 0.00013 21.8 0.0 0.00023 21.0 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|325969455|ref|YP_004245647.1| - 0.0077 15.7 0.0 0.02 14.3 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain DUF1297 PF06973.7 gi|325969456|ref|YP_004245648.1| - 4.2e-78 260.9 0.0 5.2e-78 260.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|325969456|ref|YP_004245648.1| - 1.3e-45 154.1 0.0 1.9e-45 153.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|325969456|ref|YP_004245648.1| - 1.5e-06 28.0 0.0 5.9e-05 22.8 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain Pribosyltran PF00156.22 gi|325969457|ref|YP_004245649.1| - 6.4e-17 61.4 0.2 8.4e-17 61.0 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_3 PF15610.1 gi|325969457|ref|YP_004245649.1| - 0.063 12.1 0.1 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 PRTase ComF-like Glyco_trans_4_2 PF13477.1 gi|325969457|ref|YP_004245649.1| - 0.11 12.2 0.0 0.73 9.6 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase 4-like PRTase_2 PF15609.1 gi|325969457|ref|YP_004245649.1| - 0.16 11.2 0.0 0.23 10.7 0.0 1.3 1 1 0 1 1 1 0 Phosphoribosyl transferase Lactonase PF10282.4 gi|325969458|ref|YP_004245650.1| - 3.6e-08 32.8 3.4 0.0053 15.8 0.7 3.4 2 1 1 3 3 3 3 Lactonase, 7-bladed beta-propeller Rifin_STEVOR PF02009.11 gi|325969458|ref|YP_004245650.1| - 0.032 13.8 0.8 0.045 13.3 0.6 1.2 1 0 0 1 1 1 0 Rifin/stevor family Antitoxin-MazE PF04014.13 gi|325969460|ref|YP_004245652.1| - 4.9e-05 22.9 1.1 0.048 13.3 0.0 2.5 2 1 0 2 2 2 2 Antidote-toxin recognition MazE Antitoxin-MazE PF04014.13 gi|325969462|ref|YP_004245654.1| - 2.1e-05 24.1 0.3 0.001 18.7 0.0 2.5 2 1 0 2 2 2 2 Antidote-toxin recognition MazE T2SF PF00482.18 gi|325969463|ref|YP_004245655.1| - 3.5e-10 39.8 3.0 3.5e-10 39.8 2.1 2.7 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F Pex24p PF06398.6 gi|325969463|ref|YP_004245655.1| - 3.1 6.4 8.4 5.2 5.7 5.8 1.3 1 1 0 1 1 1 0 Integral peroxisomal membrane peroxin T2SE PF00437.15 gi|325969464|ref|YP_004245656.1| - 1.6e-48 164.9 0.0 2.4e-48 164.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|325969464|ref|YP_004245656.1| - 8.4e-07 29.3 0.0 1.8e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|325969464|ref|YP_004245656.1| - 6.3e-06 25.6 0.0 1.4e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|325969464|ref|YP_004245656.1| - 1.6e-05 25.0 0.1 8.3e-05 22.6 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_23 PF13476.1 gi|325969464|ref|YP_004245656.1| - 1.8e-05 25.1 0.1 3.9e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|325969464|ref|YP_004245656.1| - 0.00043 20.3 0.0 0.00083 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|325969464|ref|YP_004245656.1| - 0.00072 18.7 0.0 0.0013 17.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|325969464|ref|YP_004245656.1| - 0.0011 18.8 0.0 0.0038 17.1 0.0 1.9 2 0 0 2 2 1 1 50S ribosome-binding GTPase AAA_24 PF13479.1 gi|325969464|ref|YP_004245656.1| - 0.0022 17.6 0.0 0.0039 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|325969464|ref|YP_004245656.1| - 0.0025 17.3 0.0 0.0056 16.1 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_19 PF13245.1 gi|325969464|ref|YP_004245656.1| - 0.0025 17.5 0.0 0.0076 15.9 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain cobW PF02492.14 gi|325969464|ref|YP_004245656.1| - 0.0028 17.1 0.0 0.006 16.0 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|325969464|ref|YP_004245656.1| - 0.0031 16.9 0.0 0.0067 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain GTP_EFTU PF00009.22 gi|325969464|ref|YP_004245656.1| - 0.0097 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IstB_IS21 PF01695.12 gi|325969464|ref|YP_004245656.1| - 0.0097 15.3 0.1 0.036 13.5 0.1 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|325969464|ref|YP_004245656.1| - 0.012 16.3 0.0 0.048 14.4 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|325969464|ref|YP_004245656.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.7 gi|325969464|ref|YP_004245656.1| - 0.018 14.3 0.0 0.038 13.2 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein SMC_N PF02463.14 gi|325969464|ref|YP_004245656.1| - 0.028 13.6 0.0 0.051 12.8 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|325969464|ref|YP_004245656.1| - 0.032 14.3 0.0 0.073 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|325969464|ref|YP_004245656.1| - 0.037 14.5 0.0 0.094 13.2 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein MobB PF03205.9 gi|325969464|ref|YP_004245656.1| - 0.044 13.4 0.0 0.091 12.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF563 PF04577.9 gi|325969464|ref|YP_004245656.1| - 0.051 13.4 0.1 6.1 6.6 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF563) AAA_5 PF07728.9 gi|325969464|ref|YP_004245656.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.4 gi|325969464|ref|YP_004245656.1| - 0.057 12.0 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|325969464|ref|YP_004245656.1| - 0.057 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|325969464|ref|YP_004245656.1| - 0.063 13.5 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|325969464|ref|YP_004245656.1| - 0.066 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|325969464|ref|YP_004245656.1| - 0.079 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Septin PF00735.13 gi|325969464|ref|YP_004245656.1| - 0.11 11.5 0.0 0.22 10.5 0.0 1.4 1 0 0 1 1 1 0 Septin Dynamin_N PF00350.18 gi|325969464|ref|YP_004245656.1| - 0.14 12.0 0.0 0.67 9.7 0.0 2.0 2 0 0 2 2 2 0 Dynamin family Mg_chelatase PF01078.16 gi|325969464|ref|YP_004245656.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SF PF00482.18 gi|325969465|ref|YP_004245657.1| - 0.00074 19.4 2.4 0.00074 19.4 1.6 2.0 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F DUF2419 PF10343.4 gi|325969465|ref|YP_004245657.1| - 0.15 11.3 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2419) Arch_flagellin PF01917.11 gi|325969466|ref|YP_004245658.1| - 0.028 14.0 8.8 0.28 10.7 0.6 2.2 1 1 1 2 2 2 0 Archaebacterial flagellin DUF1628 PF07790.6 gi|325969466|ref|YP_004245658.1| - 0.051 14.3 2.1 0.06 14.0 0.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1628) DUF1573 PF07610.6 gi|325969466|ref|YP_004245658.1| - 0.072 12.6 0.7 6.5 6.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) Class_IIIsignal PF04021.7 gi|325969467|ref|YP_004245659.1| - 8.1 6.3 12.0 1.5 8.6 3.9 2.6 2 0 0 2 2 2 0 Class III signal peptide ACT PF01842.20 gi|325969469|ref|YP_004245661.1| - 3e-05 23.4 0.1 5.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|325969469|ref|YP_004245661.1| - 0.0038 17.5 0.2 0.0094 16.2 0.1 1.7 1 1 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|325969469|ref|YP_004245661.1| - 0.065 12.9 0.0 0.13 11.9 0.0 1.6 1 1 0 1 1 1 0 ACT domain Fer4 PF00037.22 gi|325969470|ref|YP_004245662.1| - 1.4e-11 43.4 12.5 3.7e-06 26.3 2.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325969470|ref|YP_004245662.1| - 3.7e-10 39.5 5.7 5.9e-10 38.8 3.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325969470|ref|YP_004245662.1| - 1.6e-09 37.9 9.5 3.9e-09 36.7 6.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325969470|ref|YP_004245662.1| - 4.4e-09 36.4 19.1 6.8e-07 29.4 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325969470|ref|YP_004245662.1| - 5.9e-09 36.5 4.4 0.00065 20.3 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|325969470|ref|YP_004245662.1| - 1.1e-08 34.5 12.8 0.00018 21.2 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325969470|ref|YP_004245662.1| - 1.3e-08 34.5 17.4 1.5e-06 27.8 7.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325969470|ref|YP_004245662.1| - 2.9e-07 30.0 10.7 0.0012 18.6 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|325969470|ref|YP_004245662.1| - 3.4e-07 30.4 1.8 0.02 15.2 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325969470|ref|YP_004245662.1| - 4e-06 26.7 9.1 0.00039 20.3 7.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325969470|ref|YP_004245662.1| - 4.2e-06 26.6 10.4 0.01 16.0 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|325969470|ref|YP_004245662.1| - 1.3e-05 25.4 4.2 0.033 14.5 0.6 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|325969470|ref|YP_004245662.1| - 0.00012 22.3 18.2 0.02 15.3 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|325969470|ref|YP_004245662.1| - 0.00079 19.0 4.7 0.044 13.3 0.3 2.3 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|325969470|ref|YP_004245662.1| - 0.00087 19.8 7.4 0.22 12.1 2.0 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_5 PF12801.2 gi|325969470|ref|YP_004245662.1| - 0.028 14.2 2.4 0.35 10.7 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|325969470|ref|YP_004245662.1| - 0.09 13.1 11.7 0.38 11.1 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain TrmB PF01978.14 gi|325969471|ref|YP_004245663.1| - 5.3e-08 32.4 0.2 2e-05 24.1 0.0 3.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|325969471|ref|YP_004245663.1| - 2.3e-07 30.3 0.0 7.6e-07 28.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|325969471|ref|YP_004245663.1| - 9.6e-05 22.0 0.1 0.0018 17.9 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|325969471|ref|YP_004245663.1| - 0.0002 20.6 0.4 0.0053 16.1 0.0 2.6 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|325969471|ref|YP_004245663.1| - 0.00061 19.4 0.0 0.0015 18.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|325969471|ref|YP_004245663.1| - 0.0013 18.5 0.0 0.011 15.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|325969471|ref|YP_004245663.1| - 0.0044 16.6 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|325969471|ref|YP_004245663.1| - 0.0053 17.0 0.0 0.015 15.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|325969471|ref|YP_004245663.1| - 0.075 13.1 0.1 0.15 12.2 0.0 1.5 2 0 0 2 2 1 0 Winged helix-turn helix Whib PF02467.11 gi|325969471|ref|YP_004245663.1| - 0.092 13.0 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Transcription factor WhiB HTH_23 PF13384.1 gi|325969471|ref|YP_004245663.1| - 0.1 12.2 0.3 0.94 9.2 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain RP-C PF03428.8 gi|325969471|ref|YP_004245663.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF1803 PF08820.5 gi|325969471|ref|YP_004245663.1| - 0.12 12.0 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) FeoC PF09012.5 gi|325969471|ref|YP_004245663.1| - 0.14 11.8 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 FeoC like transcriptional regulator CoA_binding PF02629.14 gi|325969472|ref|YP_004245664.1| - 2.1e-29 101.8 4.8 2.9e-29 101.4 0.4 2.4 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|325969472|ref|YP_004245664.1| - 1.8e-16 60.0 0.1 3e-16 59.3 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|325969472|ref|YP_004245664.1| - 2.5e-12 46.5 0.0 4.7e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|325969472|ref|YP_004245664.1| - 2e-08 34.4 0.0 3.7e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|325969472|ref|YP_004245664.1| - 0.012 16.1 0.0 0.029 14.8 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold ATP-grasp_2 PF08442.5 gi|325969473|ref|YP_004245665.1| - 1.5e-52 177.9 0.3 5.6e-52 176.0 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|325969473|ref|YP_004245665.1| - 6.9e-20 71.1 0.3 1.1e-19 70.5 0.2 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|325969473|ref|YP_004245665.1| - 5e-09 35.7 1.6 1.5e-08 34.1 0.2 2.3 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|325969473|ref|YP_004245665.1| - 0.0013 18.4 0.0 0.0035 17.1 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|325969473|ref|YP_004245665.1| - 0.019 14.5 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain OKR_DC_1_N PF03709.10 gi|325969473|ref|YP_004245665.1| - 0.034 14.2 0.0 0.071 13.1 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF2577 PF10844.3 gi|325969473|ref|YP_004245665.1| - 0.1 12.6 0.0 1.7 8.7 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2577) TrmB PF01978.14 gi|325969476|ref|YP_004245668.1| - 9e-10 38.1 0.1 6.7e-09 35.3 0.0 2.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|325969476|ref|YP_004245668.1| - 1.9e-05 23.9 0.0 5.6e-05 22.4 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|325969476|ref|YP_004245668.1| - 0.00022 20.8 0.0 0.0004 19.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|325969476|ref|YP_004245668.1| - 0.00025 20.5 0.4 0.00054 19.4 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|325969476|ref|YP_004245668.1| - 0.00083 18.9 0.0 0.0019 17.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain DUF912 PF06024.7 gi|325969476|ref|YP_004245668.1| - 0.0091 16.0 0.3 0.017 15.1 0.2 1.4 1 0 0 1 1 1 1 Nucleopolyhedrovirus protein of unknown function (DUF912) HTH_AsnC-type PF13404.1 gi|325969476|ref|YP_004245668.1| - 0.015 14.8 0.1 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|325969476|ref|YP_004245668.1| - 0.016 14.8 0.1 0.037 13.6 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|325969476|ref|YP_004245668.1| - 0.029 14.3 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|325969476|ref|YP_004245668.1| - 0.038 13.6 0.1 0.073 12.7 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain MarR PF01047.17 gi|325969476|ref|YP_004245668.1| - 0.044 13.4 0.0 0.25 11.0 0.0 2.2 3 0 0 3 3 3 0 MarR family HTH_20 PF12840.2 gi|325969476|ref|YP_004245668.1| - 0.049 13.4 0.0 0.086 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4083 PF13314.1 gi|325969476|ref|YP_004245668.1| - 4.2 7.2 8.5 0.15 11.9 1.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) AdoHcyase PF05221.12 gi|325969477|ref|YP_004245669.1| - 4.6e-70 235.6 0.1 5.4e-70 235.4 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|325969477|ref|YP_004245669.1| - 1.1e-51 174.8 0.6 2.3e-51 173.8 0.4 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|325969477|ref|YP_004245669.1| - 1.5e-07 30.7 0.4 3.6e-07 29.5 0.1 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|325969477|ref|YP_004245669.1| - 2.2e-05 23.8 0.2 5.3e-05 22.6 0.2 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|325969477|ref|YP_004245669.1| - 0.0038 17.2 0.6 0.033 14.1 0.1 2.4 2 1 0 2 2 2 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|325969477|ref|YP_004245669.1| - 0.1 12.1 0.5 0.23 11.0 0.4 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Arg_repressor PF01316.16 gi|325969477|ref|YP_004245669.1| - 0.1 12.1 0.0 0.38 10.3 0.0 2.0 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain ABC_tran PF00005.22 gi|325969478|ref|YP_004245670.1| - 3.1e-31 108.5 0.0 5e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325969478|ref|YP_004245670.1| - 3.8e-09 36.9 0.0 1.5e-05 25.0 0.0 2.6 2 1 1 3 3 3 2 AAA domain TOBE_2 PF08402.5 gi|325969478|ref|YP_004245670.1| - 1e-06 28.6 0.0 2.8e-06 27.1 0.0 1.8 2 0 0 2 2 1 1 TOBE domain AAA_15 PF13175.1 gi|325969478|ref|YP_004245670.1| - 0.0002 20.5 0.0 0.0013 17.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|325969478|ref|YP_004245670.1| - 0.0008 18.1 0.0 1.5 7.3 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|325969478|ref|YP_004245670.1| - 0.0035 17.4 0.1 0.02 15.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|325969478|ref|YP_004245670.1| - 0.0043 17.0 0.3 0.014 15.4 0.0 1.8 2 1 0 3 3 3 1 AAA ATPase domain DUF258 PF03193.11 gi|325969478|ref|YP_004245670.1| - 0.0044 16.2 0.0 0.0068 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|325969478|ref|YP_004245670.1| - 0.0044 16.5 0.2 1 8.7 0.1 2.2 1 1 1 2 2 2 2 AAA-like domain AAA_19 PF13245.1 gi|325969478|ref|YP_004245670.1| - 0.016 14.9 0.2 0.054 13.2 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain SbcCD_C PF13558.1 gi|325969478|ref|YP_004245670.1| - 0.023 14.5 0.1 0.12 12.2 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|325969478|ref|YP_004245670.1| - 0.024 14.8 0.1 0.26 11.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|325969478|ref|YP_004245670.1| - 0.034 13.6 0.0 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|325969478|ref|YP_004245670.1| - 0.046 13.4 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase Kri1 PF05178.7 gi|325969478|ref|YP_004245670.1| - 0.073 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 KRI1-like family AAA_30 PF13604.1 gi|325969478|ref|YP_004245670.1| - 0.08 12.5 0.0 0.22 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|325969478|ref|YP_004245670.1| - 0.089 12.4 0.0 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|325969478|ref|YP_004245670.1| - 0.092 12.1 0.0 0.94 8.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain OTCace_N PF02729.16 gi|325969480|ref|YP_004245672.1| - 2.1e-41 140.8 0.0 3e-41 140.4 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|325969480|ref|YP_004245672.1| - 2e-32 112.2 0.0 2.9e-32 111.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|325969481|ref|YP_004245673.1| - 4.2e-36 122.8 1.1 5.6e-36 122.4 0.8 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|325969481|ref|YP_004245673.1| - 7.7e-21 73.2 1.1 1.5e-20 72.3 0.8 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Pribosyltran PF00156.22 gi|325969482|ref|YP_004245674.1| - 3.5e-18 65.5 3.2 8.9e-18 64.2 2.2 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|325969482|ref|YP_004245674.1| - 0.0006 19.0 0.1 0.00078 18.7 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|325969482|ref|YP_004245674.1| - 0.053 12.8 0.0 0.074 12.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase DHO_dh PF01180.16 gi|325969483|ref|YP_004245675.1| - 1.7e-42 145.4 0.0 2.8e-42 144.6 0.0 1.3 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Peptidase_M50 PF02163.17 gi|325969484|ref|YP_004245676.1| - 6.2e-10 38.3 12.5 6.2e-10 38.3 8.7 2.3 2 1 0 2 2 2 1 Peptidase family M50 FA_desaturase PF00487.19 gi|325969484|ref|YP_004245676.1| - 4.9 6.5 26.2 2.4 7.5 5.2 2.7 2 1 1 3 3 3 0 Fatty acid desaturase PUA PF01472.15 gi|325969485|ref|YP_004245677.1| - 0.038 13.7 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 PUA domain DUF4346 PF14251.1 gi|325969485|ref|YP_004245677.1| - 0.07 12.8 0.1 0.22 11.2 0.1 1.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4346) DUF996 PF06195.8 gi|325969486|ref|YP_004245678.1| - 6.4e-09 35.9 15.6 6.4e-09 35.9 10.8 4.0 2 1 1 3 3 3 1 Protein of unknown function (DUF996) HTH_21 PF13276.1 gi|325969487|ref|YP_004245679.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 HTH-like domain 2-Hacid_dh_C PF02826.14 gi|325969488|ref|YP_004245680.1| - 7.7e-36 122.8 0.0 1.1e-35 122.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|325969488|ref|YP_004245680.1| - 6.8e-17 61.1 0.0 8.9e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|325969488|ref|YP_004245680.1| - 5.1e-05 23.6 0.0 0.00021 21.6 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|325969488|ref|YP_004245680.1| - 0.0024 17.7 0.0 0.0039 17.0 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|325969488|ref|YP_004245680.1| - 0.061 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DNA_topoisoIV PF00521.15 gi|325969488|ref|YP_004245680.1| - 0.12 11.1 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Ribosomal_S14 PF00253.16 gi|325969489|ref|YP_004245681.1| - 5.4e-17 60.9 4.0 6.1e-17 60.7 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.9 gi|325969489|ref|YP_004245681.1| - 0.00031 20.2 3.0 0.00031 20.2 2.1 1.5 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS Zn_Tnp_IS91 PF14319.1 gi|325969489|ref|YP_004245681.1| - 0.032 13.7 0.2 0.034 13.6 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-HYPF PF07503.7 gi|325969489|ref|YP_004245681.1| - 0.035 13.5 1.2 0.84 9.1 0.0 2.1 2 0 0 2 2 2 0 HypF finger Ribosomal_L37ae PF01780.14 gi|325969489|ref|YP_004245681.1| - 0.043 13.6 0.4 0.049 13.5 0.3 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-CCHC_3 PF13917.1 gi|325969489|ref|YP_004245681.1| - 0.058 13.1 1.4 0.86 9.3 0.1 2.4 2 0 0 2 2 2 0 Zinc knuckle DZR PF12773.2 gi|325969489|ref|YP_004245681.1| - 0.073 12.9 0.6 0.14 12.0 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|325969489|ref|YP_004245681.1| - 0.074 12.5 1.5 4.4 6.8 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|325969489|ref|YP_004245681.1| - 0.093 12.5 3.2 0.11 12.2 2.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C4pol PF14260.1 gi|325969489|ref|YP_004245681.1| - 0.099 12.6 0.8 2.5 8.1 0.6 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DUF4182 PF13790.1 gi|325969489|ref|YP_004245681.1| - 0.11 12.3 0.7 2.6 7.8 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) Tnp_zf-ribbon_2 PF13842.1 gi|325969489|ref|YP_004245681.1| - 0.23 11.9 1.6 0.66 10.4 1.1 1.8 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon DUF1886 PF09171.5 gi|325969490|ref|YP_004245682.1| - 0.0012 17.8 0.1 0.0019 17.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) EndIII_4Fe-2S PF10576.4 gi|325969490|ref|YP_004245682.1| - 0.029 14.5 6.0 0.046 13.9 4.2 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.5 gi|325969490|ref|YP_004245682.1| - 0.046 13.4 0.1 0.1 12.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2400) DUF711 PF05167.7 gi|325969491|ref|YP_004245683.1| - 1.1e-56 192.2 0.0 1.4e-56 191.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) MaoC_dehydratas PF01575.14 gi|325969491|ref|YP_004245683.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 MaoC like domain PNP_UDP_1 PF01048.15 gi|325969492|ref|YP_004245684.1| - 8.8e-36 123.0 0.1 1e-35 122.7 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily NTP_transf_2 PF01909.18 gi|325969493|ref|YP_004245685.1| - 8.6e-09 35.6 0.1 1.4e-08 34.9 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|325969493|ref|YP_004245685.1| - 0.023 14.0 0.0 0.027 13.8 0.0 1.1 1 0 0 1 1 1 0 Predicted nucleotidyltransferase Thg1 PF04446.7 gi|325969496|ref|YP_004245688.1| - 1.6e-21 76.3 0.0 2.5e-21 75.7 0.0 1.3 1 0 0 1 1 1 1 tRNAHis guanylyltransferase TENA_THI-4 PF03070.11 gi|325969497|ref|YP_004245689.1| - 5.1e-31 108.0 1.5 6.3e-31 107.7 1.1 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family RhoGEF PF00621.15 gi|325969497|ref|YP_004245689.1| - 0.056 13.3 0.0 0.098 12.5 0.0 1.4 1 1 0 1 1 1 0 RhoGEF domain Imm16 PF15565.1 gi|325969497|ref|YP_004245689.1| - 0.099 12.5 0.0 1.8 8.4 0.0 2.2 2 0 0 2 2 2 0 Immunity protein 16 adh_short PF00106.20 gi|325969498|ref|YP_004245690.1| - 2.8e-05 24.0 0.0 3.4e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|325969498|ref|YP_004245690.1| - 4.2e-05 23.4 0.0 5.3e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase DUF1776 PF08643.5 gi|325969498|ref|YP_004245690.1| - 0.031 13.4 0.0 0.037 13.1 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) adh_short PF00106.20 gi|325969499|ref|YP_004245691.1| - 4.7e-16 59.1 0.0 5.2e-16 59.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|325969499|ref|YP_004245691.1| - 3.1e-08 33.4 0.1 3.9e-08 33.1 0.1 1.0 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|325969499|ref|YP_004245691.1| - 0.00015 21.8 0.1 0.0005 20.1 0.1 1.8 1 1 0 1 1 1 1 NADH(P)-binding adh_short_C2 PF13561.1 gi|325969499|ref|YP_004245691.1| - 0.01 15.6 0.0 0.013 15.3 0.0 1.0 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|325969499|ref|YP_004245691.1| - 0.023 14.1 0.0 0.023 14.1 0.0 1.1 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|325969499|ref|YP_004245691.1| - 0.023 13.6 0.0 0.026 13.4 0.0 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|325969499|ref|YP_004245691.1| - 0.026 13.4 0.0 0.03 13.2 0.0 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain Eno-Rase_NADH_b PF12242.3 gi|325969499|ref|YP_004245691.1| - 0.094 12.5 0.4 0.14 11.9 0.0 1.5 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HSBP1 PF06825.7 gi|325969500|ref|YP_004245692.1| - 0.00016 21.1 14.0 0.049 13.2 0.6 3.7 2 1 2 4 4 3 3 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.7 gi|325969500|ref|YP_004245692.1| - 0.00059 19.6 0.2 0.00084 19.1 0.1 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|325969500|ref|YP_004245692.1| - 0.00089 19.4 0.7 0.038 14.2 0.5 2.4 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein UPF0128 PF03673.8 gi|325969500|ref|YP_004245692.1| - 0.00099 18.4 0.0 0.0013 18.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0128) Hemagglutinin PF00509.13 gi|325969500|ref|YP_004245692.1| - 0.0013 17.0 1.0 0.0016 16.6 0.7 1.1 1 0 0 1 1 1 1 Haemagglutinin BLOC1_2 PF10046.4 gi|325969500|ref|YP_004245692.1| - 0.0018 18.4 0.8 0.003 17.6 0.3 1.6 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.4 gi|325969500|ref|YP_004245692.1| - 0.0032 16.4 0.1 0.0036 16.2 0.1 1.1 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 DUF1664 PF07889.7 gi|325969500|ref|YP_004245692.1| - 0.0044 16.8 1.2 0.0079 15.9 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) LPP PF04728.8 gi|325969500|ref|YP_004245692.1| - 0.0063 16.2 1.1 0.063 13.0 0.0 2.4 1 1 1 2 2 2 1 Lipoprotein leucine-zipper AKNA PF12443.3 gi|325969500|ref|YP_004245692.1| - 0.0067 16.4 0.1 0.034 14.1 0.1 2.0 1 1 0 1 1 1 1 AT-hook-containing transcription factor IncA PF04156.9 gi|325969500|ref|YP_004245692.1| - 0.008 15.7 0.2 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 IncA protein Laminin_I PF06008.9 gi|325969500|ref|YP_004245692.1| - 0.014 14.7 0.2 0.018 14.3 0.2 1.1 1 0 0 1 1 1 0 Laminin Domain I HalX PF08663.5 gi|325969500|ref|YP_004245692.1| - 0.017 15.0 0.6 4.7 7.2 0.1 2.8 1 1 2 3 3 3 0 HalX domain Gp-FAR-1 PF05823.7 gi|325969500|ref|YP_004245692.1| - 0.024 14.5 0.4 0.031 14.2 0.2 1.1 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Syntaxin PF00804.20 gi|325969500|ref|YP_004245692.1| - 0.028 14.5 0.8 0.045 13.9 0.5 1.4 1 1 0 1 1 1 0 Syntaxin TMF_DNA_bd PF12329.3 gi|325969500|ref|YP_004245692.1| - 0.047 13.4 0.2 0.18 11.6 0.1 2.0 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF2884 PF11101.3 gi|325969500|ref|YP_004245692.1| - 0.054 12.8 0.0 0.098 12.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) HCMV_UL139 PF12507.3 gi|325969500|ref|YP_004245692.1| - 0.059 13.5 0.1 0.13 12.4 0.1 1.6 1 1 0 1 1 1 0 Human Cytomegalovirus UL139 protein RTX PF02382.10 gi|325969500|ref|YP_004245692.1| - 0.064 11.5 0.2 0.073 11.3 0.1 1.1 1 0 0 1 1 1 0 RTX N-terminal domain DUF3921 PF13060.1 gi|325969500|ref|YP_004245692.1| - 0.065 13.1 2.0 2.4 8.0 0.2 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3921) Transposase_22 PF02994.9 gi|325969500|ref|YP_004245692.1| - 0.066 11.7 0.4 0.078 11.4 0.3 1.1 1 0 0 1 1 1 0 L1 transposable element MtrG PF04210.8 gi|325969500|ref|YP_004245692.1| - 0.07 12.8 2.9 3 7.5 0.4 3.0 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G CHASE3 PF05227.8 gi|325969500|ref|YP_004245692.1| - 0.073 12.7 0.1 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 CHASE3 domain Syntaxin_2 PF14523.1 gi|325969500|ref|YP_004245692.1| - 0.08 12.9 0.5 0.27 11.3 0.3 1.8 1 1 0 1 1 1 0 Syntaxin-like protein Phasin PF05597.6 gi|325969500|ref|YP_004245692.1| - 0.1 12.3 0.5 2.8 7.7 0.2 2.2 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF1515 PF07439.6 gi|325969500|ref|YP_004245692.1| - 0.11 12.3 1.6 6.1 6.7 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) AIP3 PF03915.8 gi|325969500|ref|YP_004245692.1| - 0.21 10.4 3.4 0.32 9.8 2.3 1.3 1 1 0 1 1 1 0 Actin interacting protein 3 MRF_C1 PF13887.1 gi|325969500|ref|YP_004245692.1| - 0.34 9.9 5.7 12 4.9 0.0 4.1 3 1 0 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 YvrJ PF12841.2 gi|325969500|ref|YP_004245692.1| - 0.59 9.4 3.8 45 3.4 0.0 3.2 1 1 1 3 3 3 0 YvrJ protein family UPF0184 PF03670.8 gi|325969500|ref|YP_004245692.1| - 1.2 9.3 4.1 44 4.3 2.5 2.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0184) PS_Dcarbxylase PF02666.10 gi|325969501|ref|YP_004245693.1| - 0.02 14.1 0.2 0.036 13.3 0.1 1.3 1 0 0 1 1 1 0 Phosphatidylserine decarboxylase DUF165 PF02592.10 gi|325969503|ref|YP_004245695.1| - 4.3e-25 88.5 11.1 4.3e-25 88.5 7.7 1.8 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 Gate PF07670.9 gi|325969503|ref|YP_004245695.1| - 9.6 6.1 10.4 1.6 8.6 0.4 2.5 2 1 0 2 2 2 0 Nucleoside recognition E1-E2_ATPase PF00122.15 gi|325969504|ref|YP_004245696.1| - 0.039 12.9 0.4 0.039 12.9 0.3 1.1 1 0 0 1 1 1 0 E1-E2 ATPase Lactamase_B PF00753.22 gi|325969505|ref|YP_004245697.1| - 1.9e-28 99.4 1.6 2.3e-28 99.1 1.1 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|325969505|ref|YP_004245697.1| - 0.00044 19.8 0.0 0.00049 19.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain 5-FTHF_cyc-lig PF01812.15 gi|325969507|ref|YP_004245699.1| - 2.3e-28 99.2 0.0 2.8e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Baculo_PEP_C PF04513.7 gi|325969508|ref|YP_004245700.1| - 1.5e-05 24.8 1.2 0.042 13.6 0.0 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Tropomyosin_1 PF12718.2 gi|325969508|ref|YP_004245700.1| - 0.0001 22.1 2.3 0.048 13.5 0.1 2.3 1 1 1 2 2 2 2 Tropomyosin like DUF1664 PF07889.7 gi|325969508|ref|YP_004245700.1| - 0.00024 20.9 3.8 0.042 13.6 0.1 2.8 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) ApoLp-III PF07464.6 gi|325969508|ref|YP_004245700.1| - 0.00032 20.7 0.7 0.00052 20.0 0.3 1.6 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) HalX PF08663.5 gi|325969508|ref|YP_004245700.1| - 0.00052 19.9 4.5 0.19 11.7 0.0 3.5 1 1 3 4 4 4 1 HalX domain NPV_P10 PF05531.7 gi|325969508|ref|YP_004245700.1| - 0.00054 20.1 2.0 0.25 11.6 0.0 3.2 2 1 2 4 4 3 1 Nucleopolyhedrovirus P10 protein HSBP1 PF06825.7 gi|325969508|ref|YP_004245700.1| - 0.0006 19.3 6.2 0.099 12.2 0.3 4.3 2 2 0 2 2 2 1 Heat shock factor binding protein 1 Apolipoprotein PF01442.13 gi|325969508|ref|YP_004245700.1| - 0.00065 19.2 0.3 0.0014 18.1 0.2 1.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF4631 PF15450.1 gi|325969508|ref|YP_004245700.1| - 0.00065 18.1 0.9 0.00082 17.7 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4631) Matrilin_ccoil PF10393.4 gi|325969508|ref|YP_004245700.1| - 0.0012 18.1 1.1 1.2 8.5 0.0 4.1 4 0 0 4 4 4 1 Trimeric coiled-coil oligomerisation domain of matrilin AAA_13 PF13166.1 gi|325969508|ref|YP_004245700.1| - 0.0013 17.3 1.7 0.0015 17.0 1.2 1.1 1 0 0 1 1 1 1 AAA domain DUF310 PF03750.8 gi|325969508|ref|YP_004245700.1| - 0.0014 18.7 1.0 0.44 10.7 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF310) Syntaxin PF00804.20 gi|325969508|ref|YP_004245700.1| - 0.0028 17.7 2.2 0.069 13.3 0.1 2.3 1 1 1 2 2 2 1 Syntaxin FliD_C PF07195.7 gi|325969508|ref|YP_004245700.1| - 0.0039 16.5 1.6 1.4 8.2 0.1 2.3 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus TMF_TATA_bd PF12325.3 gi|325969508|ref|YP_004245700.1| - 0.0041 16.8 4.0 0.26 11.0 1.4 2.4 1 1 1 2 2 2 2 TATA element modulatory factor 1 TATA binding DUF4407 PF14362.1 gi|325969508|ref|YP_004245700.1| - 0.0074 15.2 0.1 0.0087 15.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) IFT57 PF10498.4 gi|325969508|ref|YP_004245700.1| - 0.0075 15.0 0.6 0.0097 14.6 0.4 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 DinI PF06183.8 gi|325969508|ref|YP_004245700.1| - 0.01 15.8 0.6 7.4 6.6 0.1 3.2 2 2 1 3 3 3 0 DinI-like family MtrG PF04210.8 gi|325969508|ref|YP_004245700.1| - 0.023 14.3 7.1 3.4 7.3 0.1 4.3 2 1 3 5 5 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G RmuC PF02646.11 gi|325969508|ref|YP_004245700.1| - 0.025 13.4 0.9 5.1 5.8 0.1 2.3 1 1 1 2 2 2 0 RmuC family ECM11 PF15463.1 gi|325969508|ref|YP_004245700.1| - 0.03 14.6 1.5 0.12 12.7 0.3 2.1 1 1 0 2 2 2 0 Extracellular mutant protein 11 GAS PF13851.1 gi|325969508|ref|YP_004245700.1| - 0.034 13.3 2.5 0.14 11.3 1.7 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4351 PF14261.1 gi|325969508|ref|YP_004245700.1| - 0.035 13.9 0.1 5.2 7.0 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4351) Fzo_mitofusin PF04799.8 gi|325969508|ref|YP_004245700.1| - 0.036 13.4 0.6 3.4 7.0 0.4 2.3 1 1 1 2 2 2 0 fzo-like conserved region MIS13 PF08202.6 gi|325969508|ref|YP_004245700.1| - 0.037 13.0 0.2 0.047 12.7 0.2 1.2 1 0 0 1 1 1 0 Mis12-Mtw1 protein family Toxin_trans PF07952.7 gi|325969508|ref|YP_004245700.1| - 0.037 12.9 2.2 0.057 12.3 1.5 1.3 1 1 0 1 1 1 0 Clostridium neurotoxin, Translocation domain DUF3422 PF11902.3 gi|325969508|ref|YP_004245700.1| - 0.057 12.2 1.0 0.36 9.6 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3422) Gp-FAR-1 PF05823.7 gi|325969508|ref|YP_004245700.1| - 0.066 13.1 0.8 5.3 6.9 0.1 2.5 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Hemagglutinin PF00509.13 gi|325969508|ref|YP_004245700.1| - 0.066 11.3 4.6 0.72 7.9 1.2 2.0 1 1 1 2 2 2 0 Haemagglutinin Spectrin PF00435.16 gi|325969508|ref|YP_004245700.1| - 0.067 13.4 0.3 7.9 6.8 0.1 2.5 1 1 1 2 2 2 0 Spectrin repeat MtrB PF05440.7 gi|325969508|ref|YP_004245700.1| - 0.073 13.1 0.7 11 6.1 0.0 2.9 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B LemA PF04011.7 gi|325969508|ref|YP_004245700.1| - 0.075 12.1 1.6 0.2 10.7 0.3 1.9 1 1 1 2 2 2 0 LemA family EDR1 PF14381.1 gi|325969508|ref|YP_004245700.1| - 0.11 12.0 0.7 0.44 10.0 0.2 1.9 1 1 1 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 LXG PF04740.7 gi|325969508|ref|YP_004245700.1| - 0.11 12.2 2.7 0.42 10.3 1.9 1.8 1 1 0 1 1 1 0 LXG domain of WXG superfamily DASH_Spc19 PF08287.6 gi|325969508|ref|YP_004245700.1| - 0.12 12.0 1.7 0.45 10.1 0.3 2.3 2 1 1 3 3 2 0 Spc19 GldM_N PF12081.3 gi|325969508|ref|YP_004245700.1| - 0.13 11.8 1.3 0.57 9.6 0.4 1.9 1 1 1 2 2 2 0 GldM N-terminal domain DUF4164 PF13747.1 gi|325969508|ref|YP_004245700.1| - 0.17 12.0 9.4 0.23 11.6 1.4 3.1 2 1 2 4 4 3 0 Domain of unknown function (DUF4164) CorA PF01544.13 gi|325969508|ref|YP_004245700.1| - 0.29 10.1 6.6 3.3 6.6 0.6 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Phasin PF05597.6 gi|325969508|ref|YP_004245700.1| - 0.3 10.8 3.5 13 5.5 0.5 2.9 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF1192 PF06698.6 gi|325969508|ref|YP_004245700.1| - 4 7.3 6.8 3.8 7.4 0.1 3.5 4 2 1 5 5 4 0 Protein of unknown function (DUF1192) DUF165 PF02592.10 gi|325969509|ref|YP_004245701.1| - 1.1e-27 96.9 7.1 1.1e-27 96.9 4.9 1.5 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 Nairovirus_M PF07948.6 gi|325969510|ref|YP_004245702.1| - 0.19 9.8 1.1 0.26 9.3 0.8 1.1 1 0 0 1 1 1 0 Nairovirus M polyprotein-like Corona_M PF01635.13 gi|325969510|ref|YP_004245702.1| - 0.21 10.5 3.1 0.3 9.9 2.1 1.2 1 0 0 1 1 1 0 Coronavirus M matrix/glycoprotein Ureide_permease PF07168.6 gi|325969510|ref|YP_004245702.1| - 0.51 8.9 6.4 0.68 8.5 4.5 1.2 1 0 0 1 1 1 0 Ureide permease Syndecan PF01034.15 gi|325969510|ref|YP_004245702.1| - 7 6.3 8.5 0.97 9.1 1.5 2.4 2 0 0 2 2 2 0 Syndecan domain TPR_11 PF13414.1 gi|325969511|ref|YP_004245703.1| - 3e-07 29.9 0.0 0.00017 21.1 0.0 4.2 4 0 0 4 4 4 1 TPR repeat TPR_12 PF13424.1 gi|325969511|ref|YP_004245703.1| - 7.7e-05 22.5 1.8 0.028 14.3 0.1 4.3 2 2 2 4 4 4 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|325969511|ref|YP_004245703.1| - 0.0011 18.7 0.0 15 5.7 0.0 5.3 6 1 0 6 6 6 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|325969511|ref|YP_004245703.1| - 0.0013 18.2 2.9 0.044 13.4 0.0 4.0 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|325969511|ref|YP_004245703.1| - 0.0013 19.0 0.1 2.1 8.7 0.0 3.5 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|325969511|ref|YP_004245703.1| - 0.0013 18.3 0.2 2 8.4 0.0 3.6 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|325969511|ref|YP_004245703.1| - 0.0027 17.3 0.0 0.54 10.1 0.0 3.9 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|325969511|ref|YP_004245703.1| - 0.011 16.2 3.6 22 6.0 0.0 5.5 4 3 2 6 6 6 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|325969511|ref|YP_004245703.1| - 0.022 14.6 1.1 2.6 8.1 0.0 3.9 3 1 1 4 4 4 0 Tetratricopeptide repeat RPN7 PF10602.4 gi|325969511|ref|YP_004245703.1| - 0.15 11.4 1.7 14 5.0 0.1 3.5 4 0 0 4 4 4 0 26S proteasome subunit RPN7 PaREP1 PF05942.6 gi|325969513|ref|YP_004245705.1| - 2.4e-26 91.8 0.1 2.9e-26 91.5 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Fer4_7 PF12838.2 gi|325969515|ref|YP_004245707.1| - 4.5e-05 23.7 0.6 0.12 12.7 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|325969515|ref|YP_004245707.1| - 0.00099 18.9 2.4 0.0019 18.0 1.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325969515|ref|YP_004245707.1| - 0.0012 18.5 2.6 0.0017 18.0 1.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325969515|ref|YP_004245707.1| - 0.0091 15.8 3.9 0.0091 15.8 2.7 2.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|325969515|ref|YP_004245707.1| - 0.053 13.7 5.4 0.18 12.0 3.9 1.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325969515|ref|YP_004245707.1| - 0.08 13.3 1.4 3.2 8.2 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325969515|ref|YP_004245707.1| - 0.1 12.5 7.2 0.13 12.2 2.2 2.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.22 gi|325969515|ref|YP_004245707.1| - 0.19 11.4 8.0 2.2 8.0 0.3 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|325969515|ref|YP_004245707.1| - 0.28 10.8 3.7 0.31 10.6 1.7 1.7 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|325969515|ref|YP_004245707.1| - 0.38 11.4 5.9 2.2 9.0 1.7 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain AhpC-TSA PF00578.16 gi|325969516|ref|YP_004245708.1| - 4.3e-38 129.7 0.0 5.2e-38 129.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|325969516|ref|YP_004245708.1| - 2.2e-22 79.1 0.0 2.5e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin Arabinose_trans PF04602.7 gi|325969516|ref|YP_004245708.1| - 0.027 12.6 0.1 0.032 12.4 0.0 1.2 1 0 0 1 1 1 0 Mycobacterial cell wall arabinan synthesis protein GSHPx PF00255.14 gi|325969516|ref|YP_004245708.1| - 0.073 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Glutathione peroxidase Creatininase PF02633.9 gi|325969517|ref|YP_004245709.1| - 1.7e-66 223.6 0.0 1.9e-66 223.5 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF86 PF01934.12 gi|325969518|ref|YP_004245710.1| - 7.1e-17 61.1 0.0 8.8e-17 60.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 COG2 PF06148.6 gi|325969518|ref|YP_004245710.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 NTP_transf_2 PF01909.18 gi|325969519|ref|YP_004245711.1| - 0.001 19.3 0.9 0.0015 18.7 0.6 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain EamA PF00892.15 gi|325969522|ref|YP_004245714.1| - 2.5e-32 111.5 31.4 3.7e-17 62.5 9.5 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|325969522|ref|YP_004245714.1| - 4.3e-08 33.3 26.3 1.7e-05 24.9 6.4 2.7 2 1 0 2 2 2 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|325969522|ref|YP_004245714.1| - 0.02 14.5 22.9 0.27 10.8 5.0 2.6 2 1 0 2 2 2 0 Triose-phosphate Transporter family UPF0060 PF02694.10 gi|325969522|ref|YP_004245714.1| - 1.3 9.1 15.3 0.048 13.6 1.3 3.1 2 1 1 3 3 3 0 Uncharacterised BCR, YnfA/UPF0060 family DUF1628 PF07790.6 gi|325969523|ref|YP_004245715.1| - 0.047 14.4 3.0 0.091 13.5 2.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Vpu PF00558.14 gi|325969523|ref|YP_004245715.1| - 0.21 11.1 2.9 0.37 10.3 2.0 1.3 1 0 0 1 1 1 0 Vpu protein PIN PF01850.16 gi|325969525|ref|YP_004245717.1| - 3.9e-06 27.1 0.1 4.4e-06 27.0 0.1 1.1 1 0 0 1 1 1 1 PIN domain 5-FTHF_cyc-lig PF01812.15 gi|325969526|ref|YP_004245718.1| - 4.8e-28 98.2 0.0 5.7e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF3595 PF12166.3 gi|325969528|ref|YP_004245720.1| - 4.1 6.1 6.9 0.57 8.9 1.7 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3595) MFS_1 PF07690.11 gi|325969531|ref|YP_004245723.1| - 7.3e-33 113.7 58.6 4.4e-26 91.4 24.0 3.1 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|325969531|ref|YP_004245723.1| - 4e-06 25.6 3.7 4e-06 25.6 2.5 2.2 1 1 1 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.8 gi|325969531|ref|YP_004245723.1| - 0.00022 19.5 15.8 0.00029 19.0 10.9 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.19 gi|325969531|ref|YP_004245723.1| - 0.0042 15.7 20.2 0.029 12.9 1.4 3.3 1 1 1 3 3 3 2 Sugar (and other) transporter Hydantoinase_B PF02538.9 gi|325969532|ref|YP_004245724.1| - 2.5e-169 563.9 0.1 2.8e-169 563.7 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase NTP_transf_2 PF01909.18 gi|325969533|ref|YP_004245725.1| - 6.3e-11 42.4 0.0 7.9e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|325969533|ref|YP_004245725.1| - 0.034 14.1 0.0 0.044 13.8 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm AAA_16 PF13191.1 gi|325969534|ref|YP_004245726.1| - 1.8e-05 24.8 0.1 0.058 13.3 0.0 3.4 2 1 1 3 3 3 1 AAA ATPase domain TrmB PF01978.14 gi|325969534|ref|YP_004245726.1| - 4.8e-05 22.9 0.3 0.16 11.6 0.0 4.2 3 1 1 4 4 4 1 Sugar-specific transcriptional regulator TrmB APG17 PF04108.7 gi|325969534|ref|YP_004245726.1| - 0.00028 19.8 2.2 0.075 11.8 0.1 2.5 1 1 1 2 2 2 2 Autophagy protein Apg17 Baculo_PEP_C PF04513.7 gi|325969534|ref|YP_004245726.1| - 0.00078 19.2 21.5 0.0028 17.4 4.2 4.0 2 1 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_24 PF13412.1 gi|325969534|ref|YP_004245726.1| - 0.0012 18.1 0.1 0.1 12.0 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding DUF2791 PF10923.3 gi|325969534|ref|YP_004245726.1| - 0.0021 16.7 0.4 0.015 13.9 0.0 2.6 3 0 0 3 3 3 1 P-loop Domain of unknown function (DUF2791) AIP3 PF03915.8 gi|325969534|ref|YP_004245726.1| - 0.0023 16.8 0.3 0.0046 15.9 0.2 1.4 1 0 0 1 1 1 1 Actin interacting protein 3 DUF815 PF05673.8 gi|325969534|ref|YP_004245726.1| - 0.0024 16.8 0.3 0.051 12.4 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) DUF1241 PF06840.6 gi|325969534|ref|YP_004245726.1| - 0.0026 17.0 1.4 0.012 14.8 0.3 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF1241) DUF2250 PF10007.4 gi|325969534|ref|YP_004245726.1| - 0.0074 16.1 0.0 0.8 9.6 0.0 2.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|325969534|ref|YP_004245726.1| - 0.014 15.1 0.0 6.7 6.6 0.0 3.3 2 0 0 2 2 2 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|325969534|ref|YP_004245726.1| - 0.022 14.4 0.0 19 4.9 0.0 3.5 2 1 1 3 3 3 0 MarR family AAA_13 PF13166.1 gi|325969534|ref|YP_004245726.1| - 0.035 12.5 4.1 0.035 12.5 2.0 1.4 1 1 0 1 1 1 0 AAA domain Apolipoprotein PF01442.13 gi|325969534|ref|YP_004245726.1| - 0.037 13.5 0.1 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain HTH_36 PF13730.1 gi|325969534|ref|YP_004245726.1| - 0.038 14.1 0.2 1.2 9.3 0.0 3.5 3 0 0 3 3 3 0 Helix-turn-helix domain DUF2408 PF10303.4 gi|325969534|ref|YP_004245726.1| - 0.063 13.4 0.6 0.3 11.1 0.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Cas_csx3 PF09620.5 gi|325969534|ref|YP_004245726.1| - 0.063 13.0 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_csx3) ISG65-75 PF11727.3 gi|325969534|ref|YP_004245726.1| - 0.07 12.1 0.1 0.32 10.0 0.0 2.0 2 0 0 2 2 2 0 Invariant surface glycoprotein AAA_29 PF13555.1 gi|325969534|ref|YP_004245726.1| - 0.077 12.5 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain HisKA PF00512.20 gi|325969534|ref|YP_004245726.1| - 0.12 12.4 1.5 0.88 9.6 0.3 3.2 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Spc7 PF08317.6 gi|325969534|ref|YP_004245726.1| - 0.37 9.3 9.7 0.026 13.1 2.4 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein COG2 PF06148.6 gi|325969534|ref|YP_004245726.1| - 7.6 6.4 14.3 7.6 6.4 3.2 4.1 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Syntaxin_2 PF14523.1 gi|325969534|ref|YP_004245726.1| - 8.7 6.4 7.6 5.2 7.1 1.1 3.2 1 1 1 2 2 2 0 Syntaxin-like protein NurA PF09376.5 gi|325969536|ref|YP_004245728.1| - 1.3e-07 31.3 1.0 6.1e-07 29.1 0.7 1.9 1 1 0 1 1 1 1 NurA domain DUF1122 PF06557.6 gi|325969536|ref|YP_004245728.1| - 0.064 12.4 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1122) Rcd1 PF04078.8 gi|325969537|ref|YP_004245729.1| - 0.067 12.0 0.1 0.071 11.9 0.1 1.1 1 0 0 1 1 1 0 Cell differentiation family, Rcd1-like Antiterm PF03589.8 gi|325969537|ref|YP_004245729.1| - 0.1 12.6 0.1 0.21 11.7 0.1 1.5 1 1 0 1 1 1 0 Antitermination protein DUF1360 PF07098.6 gi|325969537|ref|YP_004245729.1| - 0.13 12.0 0.2 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1360) DUF99 PF01949.11 gi|325969539|ref|YP_004245731.1| - 4.2e-57 192.2 0.0 4.9e-57 192.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 DHDPS PF00701.17 gi|325969542|ref|YP_004245734.1| - 1.1e-48 165.2 0.0 1.3e-48 165.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF457 PF04307.9 gi|325969542|ref|YP_004245734.1| - 0.11 11.8 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) HALZ PF02183.13 gi|325969542|ref|YP_004245734.1| - 0.14 11.8 0.8 29 4.4 0.0 3.5 4 0 0 4 4 4 0 Homeobox associated leucine zipper HTH_21 PF13276.1 gi|325969542|ref|YP_004245734.1| - 0.15 12.1 0.2 0.33 10.9 0.1 1.6 2 0 0 2 2 2 0 HTH-like domain SMC_N PF02463.14 gi|325969543|ref|YP_004245735.1| - 1.2e-17 63.9 0.0 8.4e-17 61.1 0.0 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|325969543|ref|YP_004245735.1| - 1e-15 58.5 13.9 1e-15 58.5 9.6 4.6 1 1 3 4 4 2 1 AAA domain AAA_13 PF13166.1 gi|325969543|ref|YP_004245735.1| - 3.4e-12 45.6 38.0 2.7e-05 22.8 12.6 4.8 2 1 1 4 4 4 2 AAA domain AAA_15 PF13175.1 gi|325969543|ref|YP_004245735.1| - 3.7e-05 22.9 42.5 0.052 12.5 8.1 3.9 1 1 1 2 2 2 2 AAA ATPase domain NADH-G_4Fe-4S_3 PF10588.4 gi|325969543|ref|YP_004245735.1| - 0.00041 19.5 0.3 0.00086 18.4 0.2 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GAS PF13851.1 gi|325969543|ref|YP_004245735.1| - 0.00074 18.7 40.8 0.061 12.5 5.4 5.7 2 1 1 5 5 5 2 Growth-arrest specific micro-tubule binding DUF948 PF06103.6 gi|325969543|ref|YP_004245735.1| - 0.00097 18.9 7.1 0.93 9.4 0.1 4.9 4 2 1 5 5 3 1 Bacterial protein of unknown function (DUF948) ABC_tran PF00005.22 gi|325969543|ref|YP_004245735.1| - 0.001 19.3 7.9 1.7 8.9 0.0 4.5 3 1 0 3 3 3 1 ABC transporter MscS_porin PF12795.2 gi|325969543|ref|YP_004245735.1| - 0.0013 18.1 7.8 0.0013 18.1 5.4 4.5 3 2 1 4 4 4 2 Mechanosensitive ion channel porin domain AAA_29 PF13555.1 gi|325969543|ref|YP_004245735.1| - 0.0048 16.3 0.0 0.0092 15.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Peptidase_C6 PF00851.13 gi|325969543|ref|YP_004245735.1| - 0.007 15.0 0.4 0.007 15.0 0.3 1.8 2 0 0 2 2 2 1 Helper component proteinase Baculo_PEP_C PF04513.7 gi|325969543|ref|YP_004245735.1| - 0.008 16.0 22.4 0.14 11.9 1.0 6.4 2 1 4 7 7 7 2 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.6 gi|325969543|ref|YP_004245735.1| - 0.0082 16.0 31.9 0.28 11.0 0.0 7.9 3 2 3 7 7 7 1 COG (conserved oligomeric Golgi) complex component, COG2 BLOC1_2 PF10046.4 gi|325969543|ref|YP_004245735.1| - 0.01 15.9 35.5 2.5 8.2 2.5 7.1 3 2 3 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|325969543|ref|YP_004245735.1| - 0.017 14.3 8.0 0.023 13.8 0.4 3.6 1 1 4 5 5 5 0 Reovirus sigma C capsid protein IncA PF04156.9 gi|325969543|ref|YP_004245735.1| - 0.025 14.1 54.8 0.089 12.3 2.7 5.0 1 1 3 4 4 4 0 IncA protein SbcCD_C PF13558.1 gi|325969543|ref|YP_004245735.1| - 0.042 13.7 0.0 0.11 12.4 0.0 1.8 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Vps39_2 PF10367.4 gi|325969543|ref|YP_004245735.1| - 0.045 13.9 0.6 9.2 6.4 0.1 3.3 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 NPV_P10 PF05531.7 gi|325969543|ref|YP_004245735.1| - 0.047 13.9 17.9 55 4.0 0.2 7.3 4 3 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|325969543|ref|YP_004245735.1| - 0.069 13.5 25.2 0.22 11.9 2.3 5.7 3 1 2 5 5 5 0 Syntaxin 6, N-terminal AAA_19 PF13245.1 gi|325969543|ref|YP_004245735.1| - 0.089 12.5 0.0 0.27 11.0 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain YlbD_coat PF14071.1 gi|325969543|ref|YP_004245735.1| - 0.13 12.3 1.5 7.5 6.6 0.2 3.6 2 1 1 3 3 3 0 Putative coat protein Mod_r PF07200.8 gi|325969543|ref|YP_004245735.1| - 0.19 11.6 32.0 0.13 12.2 0.7 5.5 2 2 3 6 6 6 0 Modifier of rudimentary (Mod(r)) protein PilJ PF13675.1 gi|325969543|ref|YP_004245735.1| - 0.21 11.9 10.3 1.2 9.4 0.0 5.2 2 2 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1967 PF09269.6 gi|325969543|ref|YP_004245735.1| - 0.23 11.1 4.7 1.2 8.8 0.0 3.9 4 0 0 4 4 3 0 Domain of unknown function (DUF1967) Mut7-C PF01927.11 gi|325969543|ref|YP_004245735.1| - 0.36 10.8 6.0 0.19 11.7 0.2 2.9 3 0 0 3 3 2 0 Mut7-C RNAse domain FUSC PF04632.7 gi|325969543|ref|YP_004245735.1| - 0.5 8.7 2.4 12 4.2 0.8 2.5 2 1 0 2 2 2 0 Fusaric acid resistance protein family Allexi_40kDa PF05549.6 gi|325969543|ref|YP_004245735.1| - 0.8 8.9 17.2 0.46 9.7 1.3 4.4 3 1 1 4 4 4 0 Allexivirus 40kDa protein EST1_DNA_bind PF10373.4 gi|325969543|ref|YP_004245735.1| - 0.8 8.8 7.6 1.1 8.3 4.1 2.2 1 1 1 2 2 2 0 Est1 DNA/RNA binding domain STAT_alpha PF01017.15 gi|325969543|ref|YP_004245735.1| - 1.1 8.9 19.7 1 9.0 0.8 4.6 2 1 2 4 4 4 0 STAT protein, all-alpha domain MCPsignal PF00015.16 gi|325969543|ref|YP_004245735.1| - 1.1 8.7 11.2 0.95 8.9 0.4 4.1 3 2 1 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Rad50_zn_hook PF04423.9 gi|325969543|ref|YP_004245735.1| - 1.3 8.5 20.4 0.016 14.6 2.9 5.1 4 2 1 5 5 4 0 Rad50 zinc hook motif AAA_17 PF13207.1 gi|325969543|ref|YP_004245735.1| - 1.4 9.7 0.0 1.4 9.7 0.0 4.7 2 1 0 2 2 1 0 AAA domain DUF1664 PF07889.7 gi|325969543|ref|YP_004245735.1| - 3 7.6 30.5 0.71 9.6 0.1 6.7 4 2 2 7 7 7 0 Protein of unknown function (DUF1664) DUF4618 PF15397.1 gi|325969543|ref|YP_004245735.1| - 3.5 6.8 29.6 5.8 6.1 0.8 5.0 4 1 1 5 5 5 0 Domain of unknown function (DUF4618) Fib_alpha PF08702.5 gi|325969543|ref|YP_004245735.1| - 6 6.9 29.4 0.018 15.1 2.2 5.6 2 1 5 8 8 7 0 Fibrinogen alpha/beta chain family L31 PF09784.4 gi|325969543|ref|YP_004245735.1| - 6.4 6.9 8.0 44 4.2 0.9 3.9 3 0 0 3 3 3 0 Mitochondrial ribosomal protein L31 DUF4319 PF14203.1 gi|325969544|ref|YP_004245736.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4319) Baculo_PEP_C PF04513.7 gi|325969545|ref|YP_004245737.1| - 0.00021 21.1 2.1 0.00035 20.4 1.5 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Phasin PF05597.6 gi|325969545|ref|YP_004245737.1| - 0.00028 20.6 0.1 0.00046 19.9 0.1 1.3 1 0 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Syntaxin-6_N PF09177.6 gi|325969545|ref|YP_004245737.1| - 0.0019 18.5 0.8 0.0042 17.4 0.5 1.6 1 0 0 1 1 1 1 Syntaxin 6, N-terminal Snapin_Pallidin PF14712.1 gi|325969545|ref|YP_004245737.1| - 0.0021 18.3 1.6 0.0037 17.5 1.1 1.4 1 0 0 1 1 1 1 Snapin/Pallidin BLOC1_2 PF10046.4 gi|325969545|ref|YP_004245737.1| - 0.0078 16.3 1.7 0.02 15.0 1.2 1.7 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fmp27_WPPW PF10359.4 gi|325969545|ref|YP_004245737.1| - 0.012 14.0 0.7 0.016 13.6 0.5 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.7 gi|325969545|ref|YP_004245737.1| - 0.015 15.0 1.4 0.023 14.4 1.0 1.4 1 0 0 1 1 1 0 Laminin Domain II IncA PF04156.9 gi|325969545|ref|YP_004245737.1| - 0.016 14.7 0.5 0.024 14.2 0.4 1.2 1 0 0 1 1 1 0 IncA protein DUF4631 PF15450.1 gi|325969545|ref|YP_004245737.1| - 0.024 12.9 0.9 0.033 12.4 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4631) CorA PF01544.13 gi|325969545|ref|YP_004245737.1| - 0.04 12.9 1.5 0.062 12.3 1.0 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Syntaxin PF00804.20 gi|325969545|ref|YP_004245737.1| - 0.04 14.0 2.3 0.071 13.2 1.6 1.5 1 0 0 1 1 1 0 Syntaxin TBPIP PF07106.8 gi|325969545|ref|YP_004245737.1| - 0.044 13.3 1.2 0.085 12.3 0.8 1.5 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Allexi_40kDa PF05549.6 gi|325969545|ref|YP_004245737.1| - 0.045 13.0 0.4 0.064 12.5 0.3 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein Prominin PF05478.6 gi|325969545|ref|YP_004245737.1| - 0.067 10.7 0.5 0.099 10.1 0.3 1.2 1 0 0 1 1 1 0 Prominin Exonuc_VII_L PF02601.10 gi|325969545|ref|YP_004245737.1| - 0.08 12.1 0.2 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 Exonuclease VII, large subunit Prefoldin PF02996.12 gi|325969545|ref|YP_004245737.1| - 0.092 12.4 0.8 1.9 8.1 0.2 3.0 3 1 0 3 3 3 0 Prefoldin subunit MtrB PF05440.7 gi|325969545|ref|YP_004245737.1| - 0.11 12.5 0.5 3.6 7.7 0.0 2.4 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Reo_sigmaC PF04582.7 gi|325969545|ref|YP_004245737.1| - 0.12 11.5 0.3 0.15 11.1 0.2 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF3567 PF12091.3 gi|325969545|ref|YP_004245737.1| - 0.12 12.3 0.0 0.39 10.7 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) FlaC_arch PF05377.6 gi|325969545|ref|YP_004245737.1| - 0.17 11.8 4.6 0.2 11.5 1.8 2.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Latarcin PF10279.4 gi|325969545|ref|YP_004245737.1| - 0.18 11.9 2.1 0.44 10.7 1.4 1.6 1 0 0 1 1 1 0 Latarcin precursor CENP-F_leu_zip PF10473.4 gi|325969545|ref|YP_004245737.1| - 0.23 11.2 2.7 2.5 7.9 1.9 2.1 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF948 PF06103.6 gi|325969545|ref|YP_004245737.1| - 0.25 11.2 1.3 7.3 6.5 0.1 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) HSBP1 PF06825.7 gi|325969545|ref|YP_004245737.1| - 0.26 10.9 3.0 0.34 10.5 0.1 2.5 3 0 0 3 3 3 0 Heat shock factor binding protein 1 NPV_P10 PF05531.7 gi|325969545|ref|YP_004245737.1| - 0.26 11.5 3.7 0.58 10.4 2.6 1.7 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein YvrJ PF12841.2 gi|325969545|ref|YP_004245737.1| - 0.27 10.5 3.1 41 3.5 0.2 3.7 3 0 0 3 3 3 0 YvrJ protein family Actin PF00022.14 gi|325969546|ref|YP_004245738.1| - 2.9e-11 42.4 0.0 7.8e-11 41.0 0.0 1.6 1 1 0 1 1 1 1 Actin PBP_GOBP PF01395.17 gi|325969547|ref|YP_004245739.1| - 0.097 12.2 0.3 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 PBP/GOBP family Cyclophil_like PF04126.8 gi|325969548|ref|YP_004245740.1| - 0.0017 17.9 0.0 0.0027 17.2 0.0 1.4 1 1 0 1 1 1 1 Cyclophilin-like Pro_isomerase PF00160.16 gi|325969548|ref|YP_004245740.1| - 0.082 13.1 0.0 13 5.9 0.0 2.1 2 0 0 2 2 2 0 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Alba PF01918.16 gi|325969549|ref|YP_004245741.1| - 2.8e-11 42.8 0.4 3.7e-11 42.4 0.3 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|325969549|ref|YP_004245741.1| - 0.13 11.9 0.2 0.13 11.9 0.1 1.2 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P ATP_bind_1 PF03029.12 gi|325969550|ref|YP_004245742.1| - 8.9e-14 51.6 0.1 2.4e-08 33.8 0.0 2.3 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein Arf PF00025.16 gi|325969550|ref|YP_004245742.1| - 1.3e-11 44.0 0.0 3.1e-11 42.8 0.0 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family Miro PF08477.8 gi|325969550|ref|YP_004245742.1| - 2e-10 41.2 0.0 2.7e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|325969550|ref|YP_004245742.1| - 2.6e-06 26.7 0.0 4.2e-06 26.0 0.0 1.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|325969550|ref|YP_004245742.1| - 2.2e-05 23.9 0.0 3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_24 PF13479.1 gi|325969550|ref|YP_004245742.1| - 3.3e-05 23.5 0.1 4.1e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain Ras PF00071.17 gi|325969550|ref|YP_004245742.1| - 0.00026 20.4 0.0 0.00067 19.0 0.0 1.7 1 1 0 1 1 1 1 Ras family UPF0079 PF02367.12 gi|325969550|ref|YP_004245742.1| - 0.00064 19.3 0.0 0.0012 18.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|325969550|ref|YP_004245742.1| - 0.00073 20.3 0.0 0.001 19.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|325969550|ref|YP_004245742.1| - 0.0018 18.0 0.1 0.035 13.8 0.1 2.3 2 1 0 2 2 2 1 NTPase AAA_18 PF13238.1 gi|325969550|ref|YP_004245742.1| - 0.003 17.8 0.0 0.0038 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|325969550|ref|YP_004245742.1| - 0.0034 17.3 0.0 0.0054 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|325969550|ref|YP_004245742.1| - 0.0036 17.2 0.0 0.0044 16.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase NACHT PF05729.7 gi|325969550|ref|YP_004245742.1| - 0.0044 16.6 0.0 0.33 10.6 0.0 2.1 2 0 0 2 2 2 1 NACHT domain ABC_tran PF00005.22 gi|325969550|ref|YP_004245742.1| - 0.0077 16.5 0.0 0.013 15.7 0.0 1.3 1 1 0 1 1 1 1 ABC transporter DUF258 PF03193.11 gi|325969550|ref|YP_004245742.1| - 0.0099 15.0 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Septin PF00735.13 gi|325969550|ref|YP_004245742.1| - 0.01 14.8 0.0 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 Septin PRK PF00485.13 gi|325969550|ref|YP_004245742.1| - 0.014 14.9 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Gtr1_RagA PF04670.7 gi|325969550|ref|YP_004245742.1| - 0.019 14.1 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region T2SE PF00437.15 gi|325969550|ref|YP_004245742.1| - 0.02 13.7 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|325969550|ref|YP_004245742.1| - 0.027 13.9 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|325969550|ref|YP_004245742.1| - 0.04 13.0 0.0 0.17 10.9 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|325969550|ref|YP_004245742.1| - 0.048 13.5 0.0 0.069 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|325969550|ref|YP_004245742.1| - 0.054 13.2 0.1 0.12 12.1 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|325969550|ref|YP_004245742.1| - 0.056 13.5 0.0 0.083 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|325969550|ref|YP_004245742.1| - 0.082 11.9 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|325969550|ref|YP_004245742.1| - 0.085 12.2 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|325969550|ref|YP_004245742.1| - 0.13 11.8 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|325969550|ref|YP_004245742.1| - 0.14 11.5 0.1 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.24 gi|325969550|ref|YP_004245742.1| - 0.16 12.1 0.3 0.34 11.1 0.1 1.8 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) Robl_LC7 PF03259.12 gi|325969551|ref|YP_004245743.1| - 0.021 14.3 0.1 0.061 12.9 0.0 1.7 1 1 0 1 1 1 0 Roadblock/LC7 domain Molydop_binding PF01568.16 gi|325969552|ref|YP_004245744.1| - 0.045 13.5 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain RNA_pol_Rpb6 PF01192.17 gi|325969553|ref|YP_004245745.1| - 1.5e-18 66.2 0.1 2.1e-18 65.7 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb6 Pox_RNA_Pol_19 PF05320.7 gi|325969553|ref|YP_004245745.1| - 0.0042 16.8 0.0 0.0047 16.6 0.0 1.1 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit Cpn60_TCP1 PF00118.19 gi|325969554|ref|YP_004245746.1| - 5.7e-166 552.9 6.6 6.5e-166 552.7 4.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3942 PF13078.1 gi|325969554|ref|YP_004245746.1| - 0.013 15.5 0.8 0.093 12.8 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3942) Peptidase_S24 PF00717.18 gi|325969555|ref|YP_004245747.1| - 3.5e-05 23.3 0.0 5.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Acetyltransf_1 PF00583.19 gi|325969556|ref|YP_004245748.1| - 3.1e-14 52.7 0.2 4.5e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|325969556|ref|YP_004245748.1| - 3.6e-06 27.0 0.0 4.8e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|325969556|ref|YP_004245748.1| - 1e-05 25.5 0.1 1.9e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|325969556|ref|YP_004245748.1| - 1.1e-05 25.2 0.1 1.5e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|325969556|ref|YP_004245748.1| - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|325969556|ref|YP_004245748.1| - 4.5e-05 23.3 0.1 6.3e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|325969556|ref|YP_004245748.1| - 0.00053 19.9 0.1 0.00076 19.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|325969556|ref|YP_004245748.1| - 0.0072 16.4 0.1 0.013 15.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Complex1_51K PF01512.12 gi|325969556|ref|YP_004245748.1| - 0.034 13.8 0.2 0.06 13.0 0.1 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase 51 Kd subunit PhosphMutase PF10143.4 gi|325969557|ref|YP_004245749.1| - 3.1e-52 176.6 0.0 4.7e-52 176.1 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|325969557|ref|YP_004245749.1| - 1.1e-44 152.7 0.0 1.2e-44 152.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|325969557|ref|YP_004245749.1| - 0.00032 20.1 0.0 0.00087 18.7 0.1 1.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase CutA1 PF03091.10 gi|325969558|ref|YP_004245750.1| - 2.9e-36 123.2 0.0 3.2e-36 123.0 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Aldo_ket_red PF00248.16 gi|325969559|ref|YP_004245751.1| - 5.9e-74 248.4 0.0 6.6e-74 248.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TMP-TENI PF02581.12 gi|325969560|ref|YP_004245752.1| - 6.5e-55 185.0 0.1 7.4e-55 184.8 0.1 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|325969560|ref|YP_004245752.1| - 0.0068 15.5 1.5 0.0093 15.0 0.4 1.6 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|325969560|ref|YP_004245752.1| - 0.0078 15.3 1.0 0.014 14.5 0.7 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase DUF561 PF04481.7 gi|325969560|ref|YP_004245752.1| - 0.054 12.4 0.2 0.48 9.3 0.1 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|325969560|ref|YP_004245752.1| - 0.083 12.1 1.9 0.32 10.2 0.1 2.3 2 1 0 2 2 2 0 Histidine biosynthesis protein MS_channel PF00924.13 gi|325969561|ref|YP_004245753.1| - 4.8e-19 68.5 4.5 4.8e-19 68.5 3.1 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel Zip PF02535.17 gi|325969561|ref|YP_004245753.1| - 0.19 10.7 9.7 0.022 13.7 1.4 2.0 1 1 1 2 2 2 0 ZIP Zinc transporter FtsX PF02687.16 gi|325969561|ref|YP_004245753.1| - 0.26 11.0 19.4 0.39 10.4 1.0 3.1 1 1 2 3 3 3 0 FtsX-like permease family CRT-like PF08627.5 gi|325969561|ref|YP_004245753.1| - 0.28 11.1 3.7 0.46 10.4 2.5 1.3 1 0 0 1 1 1 0 CRT-like Gly-zipper_OmpA PF13436.1 gi|325969561|ref|YP_004245753.1| - 0.61 9.7 9.7 1 9.0 6.7 1.3 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Sec62 PF03839.11 gi|325969561|ref|YP_004245753.1| - 1.4 8.2 3.5 2.9 7.2 2.4 1.5 1 0 0 1 1 1 0 Translocation protein Sec62 DUF4117 PF13491.1 gi|325969561|ref|YP_004245753.1| - 1.8 7.9 17.3 0.061 12.7 7.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) DUF4282 PF14110.1 gi|325969561|ref|YP_004245753.1| - 5.8 7.1 16.9 1.8 8.8 1.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) MMR_HSR1_C PF08438.5 gi|325969562|ref|YP_004245754.1| - 3e-36 123.9 0.1 4.6e-36 123.3 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|325969562|ref|YP_004245754.1| - 6.9e-18 64.6 0.0 3e-17 62.6 0.0 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|325969562|ref|YP_004245754.1| - 1e-07 31.3 0.1 3.7e-05 23.0 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.16 gi|325969562|ref|YP_004245754.1| - 2.6e-06 27.1 0.1 5e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 TGS domain GTP_EFTU PF00009.22 gi|325969562|ref|YP_004245754.1| - 0.0005 19.5 0.1 0.1 12.0 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain tRNA-synt_1d PF00750.14 gi|325969563|ref|YP_004245755.1| - 2.5e-51 174.5 0.0 2.5e-32 112.0 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|325969563|ref|YP_004245755.1| - 3.7e-24 84.9 0.3 2.4e-23 82.3 0.0 2.4 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1f PF01921.13 gi|325969563|ref|YP_004245755.1| - 0.0032 16.2 0.3 0.11 11.1 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|325969563|ref|YP_004245755.1| - 0.024 13.7 0.3 0.29 10.2 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain TetR_C_5 PF08360.6 gi|325969563|ref|YP_004245755.1| - 0.033 14.1 0.1 0.25 11.3 0.1 2.4 2 0 0 2 2 2 0 QacR-like protein, C-terminal region Seryl_tRNA_N PF02403.17 gi|325969563|ref|YP_004245755.1| - 0.074 13.0 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain RNA_pol_Rpb5_C PF01191.14 gi|325969564|ref|YP_004245756.1| - 1.3e-27 95.1 0.0 1.5e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF4295 PF14128.1 gi|325969564|ref|YP_004245756.1| - 0.14 11.7 0.2 2.2 7.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4295) RNA_pol_Rpb2_6 PF00562.23 gi|325969565|ref|YP_004245757.1| - 1.4e-128 428.9 0.0 2e-128 428.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|325969565|ref|YP_004245757.1| - 3.5e-63 212.2 0.0 5.5e-63 211.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|325969565|ref|YP_004245757.1| - 6e-32 110.6 0.0 1.1e-31 109.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|325969565|ref|YP_004245757.1| - 1.6e-27 95.0 0.1 3.3e-27 94.0 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|325969565|ref|YP_004245757.1| - 1.6e-27 95.5 0.0 3.2e-27 94.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|325969565|ref|YP_004245757.1| - 1.9e-20 72.4 3.1 9.2e-20 70.2 0.9 2.7 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|325969565|ref|YP_004245757.1| - 4.9e-11 42.4 0.5 1.1e-10 41.2 0.3 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.7 gi|325969566|ref|YP_004245758.1| - 3.8e-88 295.9 0.0 1.2e-87 294.2 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|325969566|ref|YP_004245758.1| - 1.4e-68 230.0 0.0 3e-68 228.9 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|325969566|ref|YP_004245758.1| - 2.4e-33 115.0 0.0 4.5e-33 114.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|325969566|ref|YP_004245758.1| - 1.6e-29 103.0 0.2 2.9e-29 102.2 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|325969566|ref|YP_004245758.1| - 9.6e-27 92.8 0.0 2e-26 91.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 CpXC PF14353.1 gi|325969566|ref|YP_004245758.1| - 0.038 13.9 0.1 0.28 11.1 0.0 2.3 2 0 0 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.1 gi|325969566|ref|YP_004245758.1| - 0.43 9.8 5.3 0.25 10.6 0.2 2.8 2 1 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|325969566|ref|YP_004245758.1| - 1 9.3 6.1 7.9 6.5 0.0 3.7 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) GFA PF04828.9 gi|325969566|ref|YP_004245758.1| - 2.9 7.9 5.3 3 7.8 0.1 2.6 2 1 1 3 3 2 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.1 gi|325969566|ref|YP_004245758.1| - 5.8 6.6 10.3 1.2 8.8 0.1 3.1 3 0 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|325969566|ref|YP_004245758.1| - 8.1 6.0 7.9 2 7.9 0.3 3.0 3 0 0 3 3 3 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|325969567|ref|YP_004245759.1| - 2.8e-47 161.2 1.6 1.3e-46 159.0 1.1 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HMA PF00403.21 gi|325969567|ref|YP_004245759.1| - 2.2 8.4 9.1 2.3 8.4 1.0 3.4 2 1 1 3 3 3 0 Heavy-metal-associated domain Ribosomal_L7Ae PF01248.21 gi|325969568|ref|YP_004245760.1| - 6.6e-20 70.4 0.0 7.3e-20 70.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF993 PF06187.6 gi|325969568|ref|YP_004245760.1| - 0.095 11.2 0.1 0.12 10.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF993) KH_2 PF07650.12 gi|325969569|ref|YP_004245761.1| - 7.4e-17 60.6 4.3 2.3e-10 39.8 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|325969569|ref|YP_004245761.1| - 1.9e-11 43.6 0.2 1.9e-11 43.6 0.1 2.2 2 1 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.24 gi|325969569|ref|YP_004245761.1| - 2.1e-06 27.2 1.6 0.002 17.7 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|325969569|ref|YP_004245761.1| - 0.00017 21.1 0.5 0.003 17.1 0.1 2.1 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|325969569|ref|YP_004245761.1| - 0.014 15.0 1.2 2.7 7.7 0.0 2.6 2 0 0 2 2 2 0 KH domain Ribosom_S12_S23 PF00164.20 gi|325969570|ref|YP_004245762.1| - 8.1e-35 118.9 0.2 9.3e-35 118.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Macro PF01661.16 gi|325969572|ref|YP_004245764.1| - 1.4e-36 124.9 0.0 1.9e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 Macro domain Arch_ATPase PF01637.13 gi|325969573|ref|YP_004245765.1| - 2.3e-35 122.3 0.1 3.9e-35 121.6 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|325969573|ref|YP_004245765.1| - 1.8e-09 37.5 0.4 4.1e-05 23.4 0.0 2.7 2 1 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|325969573|ref|YP_004245765.1| - 8.3e-08 32.4 0.0 3.8e-07 30.2 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|325969573|ref|YP_004245765.1| - 8.8e-06 25.8 0.0 1.8e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325969573|ref|YP_004245765.1| - 0.0012 19.7 0.4 0.0059 17.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|325969573|ref|YP_004245765.1| - 0.0057 15.6 0.0 0.0092 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) CPT PF07931.7 gi|325969573|ref|YP_004245765.1| - 0.048 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Gtr1_RagA PF04670.7 gi|325969573|ref|YP_004245765.1| - 0.15 11.1 0.1 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region MFS_1 PF07690.11 gi|325969574|ref|YP_004245766.1| - 2.8e-31 108.5 57.7 2.9e-18 65.7 22.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|325969574|ref|YP_004245766.1| - 1.1e-05 25.0 11.6 0.00046 19.9 0.2 3.9 4 1 0 4 4 4 2 MFS_1 like family MFS_2 PF13347.1 gi|325969574|ref|YP_004245766.1| - 4.6e-05 22.0 29.5 0.00043 18.7 8.3 3.2 3 0 0 3 3 3 3 MFS/sugar transport protein DrsE PF02635.10 gi|325969575|ref|YP_004245767.1| - 1.8e-10 40.8 0.0 2.1e-10 40.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Pinin_SDK_N PF04697.8 gi|325969575|ref|YP_004245767.1| - 0.063 13.3 0.0 0.082 12.9 0.0 1.1 1 0 0 1 1 1 0 pinin/SDK conserved region zf-CDGSH PF09360.5 gi|325969576|ref|YP_004245768.1| - 0.0033 17.2 0.2 0.0048 16.6 0.2 1.3 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type MRL1 PF13003.2 gi|325969576|ref|YP_004245768.1| - 0.13 12.1 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L1 PfkB PF00294.19 gi|325969577|ref|YP_004245769.1| - 2.6e-36 125.3 0.0 3.2e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Sugar_tr PF00083.19 gi|325969578|ref|YP_004245770.1| - 2.1e-15 56.2 6.7 2.1e-15 56.2 4.7 3.0 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|325969578|ref|YP_004245770.1| - 7.5e-11 41.3 51.2 4.4e-05 22.3 14.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily HCV_NS2 PF01538.13 gi|325969578|ref|YP_004245770.1| - 8.3 5.8 8.3 4.8 6.5 1.6 2.4 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS2 eRF1_3 PF03465.10 gi|325969579|ref|YP_004245771.1| - 4.6e-17 62.3 0.1 2.5e-16 59.9 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|325969579|ref|YP_004245771.1| - 1.4e-16 60.2 0.0 8.9e-16 57.6 0.0 2.0 2 0 0 2 2 2 1 eRF1 domain 1 Auto_anti-p27 PF06677.7 gi|325969580|ref|YP_004245772.1| - 5.1e-17 61.3 1.4 7.4e-17 60.8 1.0 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.9 gi|325969580|ref|YP_004245772.1| - 1.2e-05 25.1 0.0 0.11 12.4 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.6 gi|325969580|ref|YP_004245772.1| - 0.00039 20.0 0.1 0.00066 19.2 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|325969580|ref|YP_004245772.1| - 0.0011 18.2 2.4 0.0021 17.3 1.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|325969580|ref|YP_004245772.1| - 0.0013 18.5 0.2 0.002 17.8 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|325969580|ref|YP_004245772.1| - 0.0046 16.5 0.9 0.0079 15.8 0.7 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-RING_3 PF14369.1 gi|325969580|ref|YP_004245772.1| - 0.0087 16.0 0.1 0.9 9.5 0.0 2.2 2 0 0 2 2 2 1 zinc-finger zinc_ribbon_2 PF13240.1 gi|325969580|ref|YP_004245772.1| - 0.015 14.7 0.7 0.46 10.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|325969580|ref|YP_004245772.1| - 0.025 14.4 0.1 0.035 13.9 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|325969580|ref|YP_004245772.1| - 0.027 14.2 0.2 0.049 13.4 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.11 gi|325969580|ref|YP_004245772.1| - 0.036 13.7 4.1 0.048 13.3 1.8 2.1 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|325969580|ref|YP_004245772.1| - 0.044 13.7 0.5 9.6 6.2 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|325969580|ref|YP_004245772.1| - 0.044 13.2 0.7 0.13 11.8 0.6 1.6 1 1 1 2 2 2 0 A2L zinc ribbon domain Sgf11 PF08209.6 gi|325969580|ref|YP_004245772.1| - 0.054 12.8 1.4 0.61 9.4 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rad50_zn_hook PF04423.9 gi|325969580|ref|YP_004245772.1| - 0.067 12.6 0.2 0.22 11.0 0.0 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif Ogr_Delta PF04606.7 gi|325969580|ref|YP_004245772.1| - 0.07 12.8 0.4 2.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DNA_RNApol_7kD PF03604.8 gi|325969580|ref|YP_004245772.1| - 0.072 12.5 1.1 1.6 8.2 0.2 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|325969580|ref|YP_004245772.1| - 0.1 12.8 0.2 0.22 11.8 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar CpXC PF14353.1 gi|325969580|ref|YP_004245772.1| - 0.13 12.2 0.7 0.26 11.2 0.5 1.6 1 1 0 1 1 1 0 CpXC protein zf-ribbon_3 PF13248.1 gi|325969580|ref|YP_004245772.1| - 0.17 11.1 5.3 7.5 5.9 4.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|325969580|ref|YP_004245772.1| - 0.22 10.7 1.3 0.69 9.1 1.0 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-HIT PF04438.11 gi|325969580|ref|YP_004245772.1| - 0.89 9.2 6.4 8.9 6.0 4.4 2.0 1 1 0 1 1 1 0 HIT zinc finger DUF1610 PF07754.6 gi|325969580|ref|YP_004245772.1| - 2.3 8.4 6.6 0.45 10.6 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Aldo_ket_red PF00248.16 gi|325969581|ref|YP_004245773.1| - 8e-64 215.1 0.0 9.5e-64 214.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DrsE PF02635.10 gi|325969582|ref|YP_004245774.1| - 0.0019 18.2 0.0 0.0053 16.8 0.0 1.7 1 1 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|325969582|ref|YP_004245774.1| - 0.0024 17.6 0.1 0.0048 16.6 0.0 1.5 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family TusA PF01206.12 gi|325969583|ref|YP_004245775.1| - 3.2e-23 81.0 0.0 3.7e-23 80.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Acylphosphatase PF00708.13 gi|325969584|ref|YP_004245776.1| - 5.7e-24 84.0 0.1 1.5e-23 82.7 0.0 1.7 1 0 0 1 1 1 1 Acylphosphatase TusA PF01206.12 gi|325969585|ref|YP_004245777.1| - 2.7e-14 52.4 0.1 3.1e-14 52.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|325969585|ref|YP_004245777.1| - 0.0023 17.4 0.0 0.0057 16.1 0.0 1.6 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) PseudoU_synth_1 PF01416.15 gi|325969586|ref|YP_004245778.1| - 2e-19 69.9 0.0 4.2e-09 36.7 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF4116 PF13475.1 gi|325969587|ref|YP_004245779.1| - 0.062 12.7 0.1 0.15 11.5 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4116) Radical_SAM PF04055.16 gi|325969588|ref|YP_004245780.1| - 5.1e-17 62.5 0.0 1.7e-16 60.8 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|325969588|ref|YP_004245780.1| - 0.0021 17.8 0.0 0.0058 16.4 0.0 1.8 1 0 0 1 1 1 1 B12 binding domain ABC_tran PF00005.22 gi|325969590|ref|YP_004245782.1| - 4.2e-57 192.2 0.0 1.5e-29 103.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|325969590|ref|YP_004245782.1| - 2.5e-22 80.1 9.0 6.6e-15 55.8 0.4 4.4 4 1 0 4 4 3 3 AAA domain SMC_N PF02463.14 gi|325969590|ref|YP_004245782.1| - 2.2e-11 43.4 5.6 0.00029 20.1 0.1 4.0 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|325969590|ref|YP_004245782.1| - 3.2e-11 42.5 0.2 0.0002 20.7 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|325969590|ref|YP_004245782.1| - 2.8e-08 34.3 0.0 0.01 16.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|325969590|ref|YP_004245782.1| - 1.3e-07 31.8 1.1 0.0034 17.5 0.1 3.5 3 1 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|325969590|ref|YP_004245782.1| - 1.5e-07 30.7 0.2 0.0046 16.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|325969590|ref|YP_004245782.1| - 1.1e-06 28.7 0.4 0.027 14.4 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain T2SE PF00437.15 gi|325969590|ref|YP_004245782.1| - 1.8e-06 27.0 0.1 0.0036 16.2 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_25 PF13481.1 gi|325969590|ref|YP_004245782.1| - 1.9e-06 27.3 0.0 0.061 12.7 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_10 PF12846.2 gi|325969590|ref|YP_004245782.1| - 2.5e-06 27.1 3.1 0.27 10.6 0.1 3.8 4 0 0 4 4 4 2 AAA-like domain AAA_17 PF13207.1 gi|325969590|ref|YP_004245782.1| - 3.2e-06 27.9 0.4 0.032 15.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain MMR_HSR1 PF01926.18 gi|325969590|ref|YP_004245782.1| - 3.2e-05 23.8 0.1 0.023 14.6 0.0 2.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|325969590|ref|YP_004245782.1| - 4.2e-05 23.3 0.1 1.2 9.0 0.0 3.5 2 1 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|325969590|ref|YP_004245782.1| - 4.9e-05 22.9 0.1 0.49 9.9 0.0 3.0 3 0 0 3 3 3 2 AAA domain MobB PF03205.9 gi|325969590|ref|YP_004245782.1| - 7.5e-05 22.4 0.3 0.24 11.0 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|325969590|ref|YP_004245782.1| - 0.00013 21.7 0.8 1.6 8.4 0.0 3.6 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|325969590|ref|YP_004245782.1| - 0.00015 21.6 0.1 0.54 10.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|325969590|ref|YP_004245782.1| - 0.00022 20.2 0.3 0.13 11.1 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain NACHT PF05729.7 gi|325969590|ref|YP_004245782.1| - 0.00024 20.7 0.1 0.82 9.3 0.1 2.6 2 0 0 2 2 2 2 NACHT domain AAA_19 PF13245.1 gi|325969590|ref|YP_004245782.1| - 0.00034 20.2 0.2 1.1 9.1 0.0 2.7 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|325969590|ref|YP_004245782.1| - 0.00079 19.3 0.1 0.52 10.2 0.0 3.5 4 0 0 4 4 3 1 AAA domain AAA_13 PF13166.1 gi|325969590|ref|YP_004245782.1| - 0.0012 17.4 0.0 1.7 6.9 0.0 3.9 4 0 0 4 4 4 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|325969590|ref|YP_004245782.1| - 0.0014 18.1 0.1 0.061 12.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family Mg_chelatase PF01078.16 gi|325969590|ref|YP_004245782.1| - 0.0016 17.6 0.0 0.25 10.4 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|325969590|ref|YP_004245782.1| - 0.0016 18.5 0.1 1.5 9.0 0.0 2.7 2 0 0 2 2 2 1 RNA helicase Arch_ATPase PF01637.13 gi|325969590|ref|YP_004245782.1| - 0.0019 17.9 1.0 0.59 9.7 0.1 2.4 2 0 0 2 2 2 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|325969590|ref|YP_004245782.1| - 0.0026 17.1 1.9 8.7 5.7 0.0 4.0 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA PF00004.24 gi|325969590|ref|YP_004245782.1| - 0.0028 17.8 3.3 2.3 8.4 0.1 4.4 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PduV-EutP PF10662.4 gi|325969590|ref|YP_004245782.1| - 0.003 17.0 0.1 1 8.8 0.0 3.3 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.1 gi|325969590|ref|YP_004245782.1| - 0.0035 16.4 0.6 5.7 5.8 0.0 3.7 4 0 0 4 4 4 0 AAA ATPase domain Miro PF08477.8 gi|325969590|ref|YP_004245782.1| - 0.0056 17.1 0.1 5.5 7.5 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein DEAD PF00270.24 gi|325969590|ref|YP_004245782.1| - 0.0087 15.5 0.0 7.4 6.0 0.1 3.4 2 2 0 2 2 2 0 DEAD/DEAH box helicase ATP_bind_1 PF03029.12 gi|325969590|ref|YP_004245782.1| - 0.0091 15.5 0.3 2 7.9 0.0 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|325969590|ref|YP_004245782.1| - 0.012 14.7 0.0 0.41 9.7 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin UPF0079 PF02367.12 gi|325969590|ref|YP_004245782.1| - 0.012 15.1 0.0 1.9 8.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Dynamin_N PF00350.18 gi|325969590|ref|YP_004245782.1| - 0.015 15.1 1.3 0.69 9.7 0.2 2.4 2 0 0 2 2 2 0 Dynamin family AAA_18 PF13238.1 gi|325969590|ref|YP_004245782.1| - 0.015 15.5 2.6 1.7 8.9 0.3 3.1 3 1 0 3 3 2 0 AAA domain DUF87 PF01935.12 gi|325969590|ref|YP_004245782.1| - 0.018 14.8 1.9 1 9.1 0.0 2.6 3 0 0 3 3 2 0 Domain of unknown function DUF87 cobW PF02492.14 gi|325969590|ref|YP_004245782.1| - 0.018 14.4 0.1 1.6 8.1 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|325969590|ref|YP_004245782.1| - 0.029 12.9 4.0 2 6.8 0.0 3.0 3 0 0 3 3 3 0 Predicted ATPase of the ABC class ACT_3 PF10000.4 gi|325969590|ref|YP_004245782.1| - 0.058 13.1 0.0 4.8 6.9 0.0 2.6 2 0 0 2 2 2 0 ACT domain PhoH PF02562.11 gi|325969590|ref|YP_004245782.1| - 0.066 12.4 0.1 7.5 5.7 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_28 PF13521.1 gi|325969590|ref|YP_004245782.1| - 0.075 12.9 0.1 2.5 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|325969590|ref|YP_004245782.1| - 0.12 11.7 0.6 6.8 6.0 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF815 PF05673.8 gi|325969590|ref|YP_004245782.1| - 0.15 10.9 0.2 0.9 8.4 0.0 2.2 3 0 0 3 3 2 0 Protein of unknown function (DUF815) Rad17 PF03215.10 gi|325969590|ref|YP_004245782.1| - 0.15 10.6 0.0 3.6 6.1 0.0 2.3 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein G-alpha PF00503.15 gi|325969590|ref|YP_004245782.1| - 0.16 10.5 0.1 4.2 5.9 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit KaiC PF06745.8 gi|325969590|ref|YP_004245782.1| - 0.3 10.1 3.4 14 4.7 0.0 3.4 4 0 0 4 4 4 0 KaiC CbiQ PF02361.11 gi|325969591|ref|YP_004245783.1| - 4.7e-19 68.8 14.3 4.7e-19 68.8 9.9 2.1 2 1 0 2 2 2 1 Cobalt transport protein eIF-6 PF01912.13 gi|325969592|ref|YP_004245784.1| - 6.1e-61 204.9 3.0 7.3e-61 204.7 2.0 1.1 1 0 0 1 1 1 1 eIF-6 family DUF402 PF04167.8 gi|325969593|ref|YP_004245785.1| - 3.2e-15 55.7 0.7 5.8e-15 54.8 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|325969593|ref|YP_004245785.1| - 0.00017 20.9 0.0 0.00025 20.3 0.0 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family DUF4229 PF14012.1 gi|325969594|ref|YP_004245786.1| - 0.021 14.7 2.6 0.021 14.7 1.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4229) Acyl_transf_3 PF01757.17 gi|325969594|ref|YP_004245786.1| - 0.027 13.3 13.5 0.033 13.0 9.3 1.1 1 0 0 1 1 1 0 Acyltransferase family BCD PF15461.1 gi|325969594|ref|YP_004245786.1| - 0.067 12.5 11.4 0.08 12.3 7.9 1.1 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase SdpI PF13630.1 gi|325969594|ref|YP_004245786.1| - 0.49 10.1 19.7 0.96 9.1 4.6 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family TRP PF06011.7 gi|325969594|ref|YP_004245786.1| - 0.81 8.1 15.2 0.97 7.9 10.6 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel YwiC PF14256.1 gi|325969594|ref|YP_004245786.1| - 1.5 8.9 14.7 1.9 8.5 4.5 2.2 1 1 1 2 2 2 0 YwiC-like protein PaREP1 PF05942.6 gi|325969595|ref|YP_004245787.1| - 4e-30 104.0 4.5 5.7e-30 103.5 2.3 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.9 gi|325969595|ref|YP_004245787.1| - 0.011 15.5 0.4 0.02 14.7 0.3 1.5 1 0 0 1 1 1 0 HEPN domain Hydant_A_N PF05378.8 gi|325969595|ref|YP_004245787.1| - 0.047 13.2 0.1 0.084 12.3 0.1 1.4 1 1 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region SPO22 PF08631.5 gi|325969595|ref|YP_004245787.1| - 0.055 12.5 0.0 0.067 12.2 0.0 1.1 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like DUF4398 PF14346.1 gi|325969595|ref|YP_004245787.1| - 0.11 12.5 2.6 0.089 12.8 0.8 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) CbiA PF01656.18 gi|325969596|ref|YP_004245788.1| - 4.4e-09 36.0 0.0 7e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|325969596|ref|YP_004245788.1| - 0.00049 20.0 0.0 0.00074 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|325969596|ref|YP_004245788.1| - 0.0089 15.1 0.1 0.022 13.8 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ Metallophos_2 PF12850.2 gi|325969597|ref|YP_004245789.1| - 4.9e-07 29.7 0.0 8.3e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|325969597|ref|YP_004245789.1| - 1.7e-05 24.3 0.0 0.037 13.4 0.0 2.6 3 0 0 3 3 3 2 Calcineurin-like phosphoesterase CbiK PF06180.6 gi|325969597|ref|YP_004245789.1| - 0.044 12.8 0.1 0.067 12.2 0.1 1.2 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) Levi_coat PF01819.12 gi|325969597|ref|YP_004245789.1| - 0.11 12.1 0.0 13 5.3 0.0 2.2 2 0 0 2 2 2 0 Levivirus coat protein TIM PF00121.13 gi|325969599|ref|YP_004245791.1| - 7.1e-29 100.5 0.0 1.1e-26 93.3 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|325969599|ref|YP_004245791.1| - 6.6e-08 31.9 0.2 9.5e-08 31.4 0.1 1.4 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|325969599|ref|YP_004245791.1| - 1e-05 24.7 0.0 2.6e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|325969599|ref|YP_004245791.1| - 2e-05 23.9 0.1 5.8e-05 22.4 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|325969599|ref|YP_004245791.1| - 7.9e-05 21.3 0.1 0.00012 20.6 0.1 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain NMO PF03060.10 gi|325969599|ref|YP_004245791.1| - 0.00014 21.1 0.2 0.0002 20.6 0.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.9 gi|325969599|ref|YP_004245791.1| - 0.0097 14.8 0.1 0.015 14.2 0.1 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|325969599|ref|YP_004245791.1| - 0.01 14.7 0.1 0.026 13.3 0.0 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PcrB PF01884.12 gi|325969599|ref|YP_004245791.1| - 0.07 12.3 0.3 0.15 11.3 0.2 1.5 2 0 0 2 2 2 0 PcrB family IMPDH PF00478.20 gi|325969599|ref|YP_004245791.1| - 0.077 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain CaM_bdg_C0 PF10562.4 gi|325969599|ref|YP_004245791.1| - 0.72 9.7 4.9 0.14 12.0 0.6 1.8 2 0 0 2 2 2 0 Calmodulin-binding domain C0 of NMDA receptor NR1 subunit Aconitase PF00330.15 gi|325969600|ref|YP_004245792.1| - 1.3e-130 436.0 0.0 1.5e-130 435.7 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|325969600|ref|YP_004245792.1| - 4.4e-36 123.8 0.0 7.4e-36 123.1 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain NAD_kinase PF01513.16 gi|325969604|ref|YP_004245796.1| - 1e-31 109.8 2.4 2.2e-31 108.7 0.8 1.8 2 0 0 2 2 2 1 ATP-NAD kinase HTH_9 PF08221.6 gi|325969604|ref|YP_004245796.1| - 2.1e-05 24.2 0.1 4.4e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.14 gi|325969604|ref|YP_004245796.1| - 3.4e-05 23.4 0.3 7.7e-05 22.3 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|325969604|ref|YP_004245796.1| - 5.8e-05 22.7 0.1 0.00014 21.4 0.1 1.7 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|325969604|ref|YP_004245796.1| - 0.00083 18.7 0.2 0.0025 17.2 0.1 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.1 gi|325969604|ref|YP_004245796.1| - 0.0015 17.9 1.2 0.003 16.9 0.9 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.6 gi|325969604|ref|YP_004245796.1| - 0.0017 18.2 0.5 0.0042 17.0 0.3 1.6 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein MarR_2 PF12802.2 gi|325969604|ref|YP_004245796.1| - 0.002 17.7 0.0 0.0047 16.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|325969604|ref|YP_004245796.1| - 0.0062 16.8 0.0 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|325969604|ref|YP_004245796.1| - 0.021 14.3 0.1 0.046 13.2 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_11 PF08279.7 gi|325969604|ref|YP_004245796.1| - 0.023 14.3 2.1 0.024 14.2 0.4 1.8 2 0 0 2 2 1 0 HTH domain RepL PF05732.6 gi|325969604|ref|YP_004245796.1| - 0.041 13.1 0.0 0.091 11.9 0.0 1.5 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_IclR PF09339.5 gi|325969604|ref|YP_004245796.1| - 0.042 13.4 0.1 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_DeoR PF08220.7 gi|325969604|ref|YP_004245796.1| - 0.043 13.3 0.3 0.084 12.4 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|325969604|ref|YP_004245796.1| - 0.058 13.2 0.9 0.56 10.0 0.1 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix FeoC PF09012.5 gi|325969604|ref|YP_004245796.1| - 0.069 12.8 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Delta_lysin PF05372.6 gi|325969605|ref|YP_004245797.1| - 0.092 12.1 0.2 1.3 8.4 0.0 2.6 2 0 0 2 2 2 0 Delta lysin family RNA_pol_L_2 PF13656.1 gi|325969606|ref|YP_004245798.1| - 5.4e-23 80.2 0.0 6.2e-23 80.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|325969606|ref|YP_004245798.1| - 0.00096 18.2 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain CBS PF00571.23 gi|325969608|ref|YP_004245800.1| - 4.9e-50 167.0 10.5 4.8e-12 45.4 0.0 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|325969608|ref|YP_004245800.1| - 0.00063 20.1 4.0 0.018 15.4 1.3 2.4 2 0 0 2 2 2 2 Sigma 54 modulation protein / S30EA ribosomal protein DUF2122 PF09895.4 gi|325969609|ref|YP_004245801.1| - 2.4e-25 88.7 0.0 3.5e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Oxidored_q4 PF00507.14 gi|325969610|ref|YP_004245802.1| - 5.6e-06 26.1 3.2 5.6e-06 26.1 2.2 1.9 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF3043 PF11241.3 gi|325969610|ref|YP_004245802.1| - 1.7 8.1 10.3 3.9 7.0 1.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) Complex1_30kDa PF00329.14 gi|325969611|ref|YP_004245803.1| - 2.6e-25 88.6 0.0 4.1e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|325969611|ref|YP_004245803.1| - 3.4e-20 71.9 0.1 6e-20 71.1 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|325969612|ref|YP_004245804.1| - 1.3e-61 208.0 0.0 1.6e-61 207.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NurA PF09376.5 gi|325969613|ref|YP_004245805.1| - 4.9e-19 68.7 0.1 6.9e-19 68.2 0.1 1.2 1 0 0 1 1 1 1 NurA domain DUF2208 PF09973.4 gi|325969614|ref|YP_004245806.1| - 0.00078 18.7 1.2 0.0012 18.1 0.8 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Wzy_C PF04932.10 gi|325969614|ref|YP_004245806.1| - 0.39 10.4 4.8 0.43 10.3 3.3 1.1 1 0 0 1 1 1 0 O-Antigen ligase CbiA PF01656.18 gi|325969615|ref|YP_004245807.1| - 0.0041 16.5 0.0 0.039 13.3 0.0 2.4 2 1 1 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|325969615|ref|YP_004245807.1| - 0.012 14.6 0.2 0.024 13.7 0.1 1.6 1 1 0 1 1 1 0 ATPase MipZ MobB PF03205.9 gi|325969615|ref|YP_004245807.1| - 0.022 14.4 0.0 0.066 12.9 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|325969615|ref|YP_004245807.1| - 0.023 13.5 0.2 0.049 12.3 0.1 1.5 1 0 0 1 1 1 0 ArgK protein Zeta_toxin PF06414.7 gi|325969615|ref|YP_004245807.1| - 0.065 12.3 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Pyridox_ox_2 PF12900.2 gi|325969616|ref|YP_004245808.1| - 4.2e-34 117.4 0.0 5.1e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|325969616|ref|YP_004245808.1| - 0.014 15.3 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase B3_4 PF03483.12 gi|325969617|ref|YP_004245809.1| - 5.1e-25 87.9 0.0 7e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain Glyco_hydro_108 PF05838.7 gi|325969617|ref|YP_004245809.1| - 0.068 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase 108 ECR1_N PF14382.1 gi|325969618|ref|YP_004245810.1| - 8.6e-07 28.1 0.0 1.6e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region UPF0547 PF10571.4 gi|325969618|ref|YP_004245810.1| - 6.4e-06 25.7 1.2 0.046 13.4 0.0 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|325969618|ref|YP_004245810.1| - 3.3e-05 23.5 0.7 6.1e-05 22.6 0.5 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|325969618|ref|YP_004245810.1| - 0.0002 20.7 3.3 0.00045 19.6 2.3 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|325969618|ref|YP_004245810.1| - 0.00025 20.4 1.5 0.00056 19.3 1.1 1.5 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.7 gi|325969618|ref|YP_004245810.1| - 0.00039 20.1 0.3 0.00067 19.3 0.2 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|325969618|ref|YP_004245810.1| - 0.00075 19.1 1.2 0.0015 18.1 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|325969618|ref|YP_004245810.1| - 0.0013 18.4 0.2 0.0021 17.8 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|325969618|ref|YP_004245810.1| - 0.0014 18.5 3.1 0.014 15.2 2.1 2.1 1 1 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|325969618|ref|YP_004245810.1| - 0.0015 18.1 0.2 1.6 8.3 0.0 2.6 2 0 0 2 2 2 2 zinc-ribbon domain S1 PF00575.18 gi|325969618|ref|YP_004245810.1| - 0.0015 18.5 2.0 0.017 15.1 0.1 2.6 1 1 1 2 2 2 1 S1 RNA binding domain EXOSC1 PF10447.4 gi|325969618|ref|YP_004245810.1| - 0.0018 18.1 3.4 0.0027 17.6 1.1 2.3 2 1 0 2 2 1 1 Exosome component EXOSC1/CSL4 A2L_zn_ribbon PF08792.5 gi|325969618|ref|YP_004245810.1| - 0.0022 17.4 0.3 0.0039 16.6 0.2 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|325969618|ref|YP_004245810.1| - 0.0025 17.4 0.7 2.1 8.0 0.1 2.6 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|325969618|ref|YP_004245810.1| - 0.0028 17.3 0.1 0.0056 16.3 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|325969618|ref|YP_004245810.1| - 0.0032 16.6 5.6 0.18 11.0 0.5 2.2 1 1 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|325969618|ref|YP_004245810.1| - 0.0062 16.0 3.0 0.032 13.7 2.1 2.0 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|325969618|ref|YP_004245810.1| - 0.025 14.2 2.8 3 7.6 0.1 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-CSL PF05207.8 gi|325969618|ref|YP_004245810.1| - 0.027 13.9 0.2 0.12 11.8 0.2 1.9 1 1 0 1 1 1 0 CSL zinc finger zinc-ribbons_6 PF07191.7 gi|325969618|ref|YP_004245810.1| - 0.037 13.8 0.3 0.058 13.1 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.1 gi|325969618|ref|YP_004245810.1| - 0.046 13.4 1.8 4.8 6.9 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF1610 PF07754.6 gi|325969618|ref|YP_004245810.1| - 0.094 12.8 5.0 5.1 7.2 1.2 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-IS66 PF13005.2 gi|325969618|ref|YP_004245810.1| - 0.097 12.6 3.6 3.7 7.5 0.2 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF35_N PF12172.3 gi|325969618|ref|YP_004245810.1| - 0.13 12.2 3.0 3.8 7.5 0.4 2.6 3 0 0 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Cys_rich_CPXG PF14255.1 gi|325969618|ref|YP_004245810.1| - 0.13 12.0 0.2 17 5.3 0.0 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG Zn_Tnp_IS91 PF14319.1 gi|325969618|ref|YP_004245810.1| - 0.14 11.6 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.2 gi|325969618|ref|YP_004245810.1| - 0.17 11.6 3.2 0.53 10.1 2.2 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Pilus_PilP PF11356.3 gi|325969618|ref|YP_004245810.1| - 0.18 12.0 1.2 0.32 11.2 0.5 1.7 2 0 0 2 2 1 0 Type IV pilus biogenesis zf-FPG_IleRS PF06827.9 gi|325969618|ref|YP_004245810.1| - 0.24 11.0 3.3 2.2 7.9 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C4_Topoisom PF01396.14 gi|325969618|ref|YP_004245810.1| - 0.33 10.4 3.1 8 6.0 0.2 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF164 PF02591.10 gi|325969618|ref|YP_004245810.1| - 0.35 10.7 2.7 1.1 9.0 0.0 2.5 1 1 1 2 2 2 0 Putative zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|325969618|ref|YP_004245810.1| - 0.42 9.9 4.7 3.7 6.9 3.3 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding Ogr_Delta PF04606.7 gi|325969618|ref|YP_004245810.1| - 1.4 8.6 3.6 15 5.3 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.1 gi|325969618|ref|YP_004245810.1| - 1.7 8.7 7.1 8.7 6.4 0.7 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3797 PF12677.2 gi|325969618|ref|YP_004245810.1| - 2 8.0 7.2 4.6 6.9 0.1 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) zf-TFIIB PF13453.1 gi|325969618|ref|YP_004245810.1| - 2.3 7.5 4.3 18 4.6 3.1 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger SurE PF01975.12 gi|325969619|ref|YP_004245811.1| - 2.6e-50 170.5 0.0 3.2e-50 170.2 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE tRNA-synt_1 PF00133.17 gi|325969620|ref|YP_004245812.1| - 1.2e-169 565.2 0.3 2e-169 564.4 0.2 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|325969620|ref|YP_004245812.1| - 5e-26 91.2 1.8 7.8e-08 31.3 0.0 4.3 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|325969620|ref|YP_004245812.1| - 1.4e-22 80.0 0.5 1.4e-22 80.0 0.4 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|325969620|ref|YP_004245812.1| - 5.3e-07 29.1 0.1 2.7e-06 26.8 0.0 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|325969620|ref|YP_004245812.1| - 0.00034 19.8 0.0 0.052 12.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|325969620|ref|YP_004245812.1| - 0.0031 16.2 0.8 0.013 14.2 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) ASCH PF04266.9 gi|325969621|ref|YP_004245813.1| - 8.7e-07 29.2 0.0 1.3e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 ASCH domain ATP-synt_8 PF00895.15 gi|325969622|ref|YP_004245814.1| - 0.012 15.8 0.1 0.04 14.1 0.0 1.8 2 0 0 2 2 2 0 ATP synthase protein 8 DUF3021 PF11457.3 gi|325969622|ref|YP_004245814.1| - 0.017 15.0 4.1 0.021 14.7 2.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3021) Baculo_11_kDa PF06143.6 gi|325969622|ref|YP_004245814.1| - 0.04 13.2 0.2 0.077 12.3 0.1 1.4 1 0 0 1 1 1 0 Baculovirus 11 kDa family DUF4492 PF14899.1 gi|325969622|ref|YP_004245814.1| - 0.044 13.2 0.4 0.096 12.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4492) PsbH PF00737.15 gi|325969622|ref|YP_004245814.1| - 2 8.0 6.9 1.1 8.8 1.1 2.4 2 1 0 2 2 2 0 Photosystem II 10 kDa phosphoprotein DUF1980 PF09323.5 gi|325969622|ref|YP_004245814.1| - 3.7 7.2 5.9 7.1 6.3 4.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1980) ATP-cone PF03477.11 gi|325969623|ref|YP_004245815.1| - 3.1e-07 30.7 1.6 3.6e-07 30.5 1.1 1.2 1 0 0 1 1 1 1 ATP cone domain SKI PF01202.17 gi|325969623|ref|YP_004245815.1| - 0.12 12.2 0.1 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Shikimate kinase MobB PF03205.9 gi|325969624|ref|YP_004245816.1| - 3e-06 26.9 0.7 1.1e-05 25.2 0.5 2.1 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|325969624|ref|YP_004245816.1| - 0.00013 21.4 0.1 0.00027 20.3 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF4162 PF13732.1 gi|325969624|ref|YP_004245816.1| - 0.037 14.5 0.3 0.16 12.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) AAA_18 PF13238.1 gi|325969624|ref|YP_004245816.1| - 0.098 12.9 1.9 0.41 10.9 1.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|325969626|ref|YP_004245818.1| - 8.8e-21 74.0 0.0 1.7e-20 73.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|325969626|ref|YP_004245818.1| - 3.2e-20 72.0 0.0 5.5e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|325969626|ref|YP_004245818.1| - 2.7e-12 46.4 0.0 1.2e-11 44.3 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|325969626|ref|YP_004245818.1| - 2.1e-09 36.8 0.2 1.6e-07 30.6 0.1 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|325969626|ref|YP_004245818.1| - 4.5e-09 36.6 0.0 1.3e-08 35.0 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.6 gi|325969626|ref|YP_004245818.1| - 2.9e-08 32.8 0.0 0.00047 18.9 0.0 2.3 1 1 1 2 2 2 2 PrkA AAA domain AAA_22 PF13401.1 gi|325969626|ref|YP_004245818.1| - 1.3e-07 31.8 0.0 3.5e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain MCM PF00493.18 gi|325969626|ref|YP_004245818.1| - 1.3e-07 30.7 0.0 2.2e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family AAA_16 PF13191.1 gi|325969626|ref|YP_004245818.1| - 1.2e-05 25.3 0.0 0.00025 21.0 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain ATP-synt_ab PF00006.20 gi|325969626|ref|YP_004245818.1| - 0.00027 20.4 0.2 0.0028 17.1 0.1 2.1 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain RuvB_N PF05496.7 gi|325969626|ref|YP_004245818.1| - 0.00028 19.9 0.9 0.022 13.7 0.6 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|325969626|ref|YP_004245818.1| - 0.0005 19.9 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|325969626|ref|YP_004245818.1| - 0.00085 19.2 0.0 0.0022 17.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|325969626|ref|YP_004245818.1| - 0.0013 18.4 0.0 0.0028 17.3 0.0 1.6 2 0 0 2 2 1 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|325969626|ref|YP_004245818.1| - 0.0016 18.5 0.0 0.012 15.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain DEAD PF00270.24 gi|325969626|ref|YP_004245818.1| - 0.0027 17.2 0.0 2.3 7.6 0.0 2.3 1 1 1 2 2 2 2 DEAD/DEAH box helicase IstB_IS21 PF01695.12 gi|325969626|ref|YP_004245818.1| - 0.0034 16.8 0.0 0.069 12.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|325969626|ref|YP_004245818.1| - 0.009 16.8 0.1 0.035 14.9 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_24 PF13479.1 gi|325969626|ref|YP_004245818.1| - 0.01 15.4 0.0 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|325969626|ref|YP_004245818.1| - 0.043 14.1 0.0 0.14 12.4 0.0 1.9 2 0 0 2 2 1 0 ABC transporter AAA_18 PF13238.1 gi|325969626|ref|YP_004245818.1| - 0.044 14.0 0.0 0.1 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|325969626|ref|YP_004245818.1| - 0.052 12.7 0.0 0.095 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|325969626|ref|YP_004245818.1| - 0.052 13.2 0.0 0.17 11.5 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_32 PF13654.1 gi|325969626|ref|YP_004245818.1| - 0.067 11.8 0.0 2.5 6.6 0.0 2.4 1 1 1 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|325969626|ref|YP_004245818.1| - 0.074 12.7 0.0 4.3 7.0 0.0 2.9 3 0 0 3 3 3 0 NTPase TIP49 PF06068.8 gi|325969626|ref|YP_004245818.1| - 0.082 11.6 0.0 0.21 10.2 0.0 1.7 2 0 0 2 2 2 0 TIP49 C-terminus VWA_2 PF13519.1 gi|325969627|ref|YP_004245819.1| - 3e-23 82.7 0.0 9.2e-23 81.2 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|325969627|ref|YP_004245819.1| - 1.2e-19 70.7 0.0 5.6e-19 68.5 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|325969627|ref|YP_004245819.1| - 3.9e-11 42.8 0.0 1.1e-10 41.4 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|325969627|ref|YP_004245819.1| - 1.3e-09 37.5 1.2 7.9e-09 34.9 0.5 2.3 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein DUF58 PF01882.13 gi|325969627|ref|YP_004245819.1| - 4.1e-06 26.8 0.0 1.5e-05 25.0 0.0 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 vWA-TerF-like PF10138.4 gi|325969627|ref|YP_004245819.1| - 0.00012 21.9 0.2 0.00034 20.4 0.0 1.9 2 0 0 2 2 2 1 vWA found in TerF C terminus Radical_SAM PF04055.16 gi|325969627|ref|YP_004245819.1| - 0.0079 16.3 0.1 4.8 7.3 0.0 2.7 3 0 0 3 3 3 2 Radical SAM superfamily TIR_2 PF13676.1 gi|325969627|ref|YP_004245819.1| - 0.058 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 TIR domain DNA_primase_lrg PF04104.9 gi|325969628|ref|YP_004245820.1| - 2.4e-28 99.1 0.0 4e-28 98.4 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Nucleopor_Nup85 PF07575.8 gi|325969628|ref|YP_004245820.1| - 0.026 12.7 0.0 0.039 12.1 0.0 1.2 1 0 0 1 1 1 0 Nup85 Nucleoporin DUF2204 PF09970.4 gi|325969630|ref|YP_004245822.1| - 4.7e-53 179.3 6.8 5.4e-53 179.1 4.7 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) Ribosomal_L6 PF00347.18 gi|325969631|ref|YP_004245823.1| - 1.4e-21 76.7 6.2 5.1e-11 42.9 1.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 SKG6 PF08693.5 gi|325969632|ref|YP_004245824.1| - 0.017 14.3 0.9 0.053 12.8 0.7 1.8 1 0 0 1 1 1 0 Transmembrane alpha-helix domain TadE PF07811.7 gi|325969632|ref|YP_004245824.1| - 3.2 7.7 6.3 0.53 10.2 1.1 2.1 2 0 0 2 2 2 0 TadE-like protein DUF86 PF01934.12 gi|325969639|ref|YP_004245831.1| - 4.7e-08 32.7 0.1 6.1e-08 32.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF87 PF01935.12 gi|325969640|ref|YP_004245832.1| - 4.3e-20 72.5 0.2 6.7e-20 71.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|325969640|ref|YP_004245832.1| - 4.7e-19 68.9 0.5 1.2e-18 67.5 0.3 1.7 1 1 0 1 1 1 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|325969640|ref|YP_004245832.1| - 7.2e-08 31.4 0.0 4e-07 29.0 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|325969640|ref|YP_004245832.1| - 1.4e-05 24.6 0.0 0.00048 19.6 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family ArgK PF03308.11 gi|325969640|ref|YP_004245832.1| - 0.0006 18.6 0.5 0.0012 17.7 0.1 1.6 2 0 0 2 2 2 1 ArgK protein AAA_22 PF13401.1 gi|325969640|ref|YP_004245832.1| - 0.00075 19.6 0.1 0.086 12.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|325969640|ref|YP_004245832.1| - 0.0018 17.9 0.3 0.0044 16.7 0.2 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|325969640|ref|YP_004245832.1| - 0.0021 18.3 0.0 0.004 17.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter Arch_ATPase PF01637.13 gi|325969640|ref|YP_004245832.1| - 0.0046 16.6 0.7 0.021 14.5 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase DUF815 PF05673.8 gi|325969640|ref|YP_004245832.1| - 0.0099 14.8 0.0 0.017 14.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DUF853 PF05872.7 gi|325969640|ref|YP_004245832.1| - 0.017 13.4 0.0 0.038 12.3 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) MMR_HSR1 PF01926.18 gi|325969640|ref|YP_004245832.1| - 0.023 14.6 0.1 0.06 13.3 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|325969640|ref|YP_004245832.1| - 0.029 14.3 0.5 0.074 13.0 0.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|325969640|ref|YP_004245832.1| - 0.033 15.0 0.3 0.13 13.0 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|325969640|ref|YP_004245832.1| - 0.034 14.4 0.2 0.17 12.1 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|325969640|ref|YP_004245832.1| - 0.049 13.5 0.4 1.2 9.0 0.0 2.6 2 2 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|325969640|ref|YP_004245832.1| - 0.075 13.2 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF258 PF03193.11 gi|325969640|ref|YP_004245832.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AA_permease_2 PF13520.1 gi|325969641|ref|YP_004245833.1| - 1.1e-43 149.3 58.5 1.1e-43 149.3 40.5 2.4 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|325969641|ref|YP_004245833.1| - 1.1e-31 109.7 56.0 1.1e-31 109.7 38.8 2.3 1 1 1 2 2 2 1 Amino acid permease OMPdecase PF00215.19 gi|325969642|ref|YP_004245834.1| - 1.7e-17 63.5 0.0 2.4e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family AsnC_trans_reg PF01037.16 gi|325969643|ref|YP_004245835.1| - 8.6e-17 60.6 0.0 1.4e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|325969643|ref|YP_004245835.1| - 4.7e-10 38.7 2.8 7.4e-10 38.0 1.9 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|325969643|ref|YP_004245835.1| - 8.5e-10 38.0 2.3 1.5e-09 37.1 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|325969643|ref|YP_004245835.1| - 0.0008 19.0 0.2 0.0016 18.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|325969643|ref|YP_004245835.1| - 0.0029 17.2 0.8 0.0053 16.3 0.5 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.16 gi|325969643|ref|YP_004245835.1| - 0.013 14.8 0.3 0.022 14.1 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|325969643|ref|YP_004245835.1| - 0.025 14.2 0.1 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|325969643|ref|YP_004245835.1| - 0.075 12.7 0.2 0.21 11.2 0.1 1.7 2 0 0 2 2 2 0 MarR family HxlR PF01638.12 gi|325969643|ref|YP_004245835.1| - 0.079 12.5 0.1 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|325969643|ref|YP_004245835.1| - 0.09 12.5 0.1 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|325969643|ref|YP_004245835.1| - 0.098 12.2 0.1 0.2 11.2 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.11 gi|325969643|ref|YP_004245835.1| - 0.1 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor Fer4 PF00037.22 gi|325969644|ref|YP_004245836.1| - 5.6e-11 41.5 19.6 6.7e-10 38.1 3.3 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|325969644|ref|YP_004245836.1| - 6.6e-11 42.4 7.7 1.6e-10 41.2 5.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325969644|ref|YP_004245836.1| - 7.1e-10 38.3 16.4 8.7e-10 38.0 2.7 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325969644|ref|YP_004245836.1| - 1.3e-09 37.7 8.7 1.8e-09 37.3 6.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325969644|ref|YP_004245836.1| - 3.1e-09 36.2 10.4 3.5e-08 32.9 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325969644|ref|YP_004245836.1| - 1.7e-08 34.0 7.2 1.7e-08 34.0 5.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325969644|ref|YP_004245836.1| - 3e-08 33.7 9.3 6e-08 32.8 6.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325969644|ref|YP_004245836.1| - 4.3e-08 33.5 10.6 2.6e-07 31.1 7.4 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|325969644|ref|YP_004245836.1| - 2.2e-07 31.4 8.5 0.0001 22.9 0.7 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|325969644|ref|YP_004245836.1| - 8.1e-06 26.0 18.2 0.00051 20.4 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|325969644|ref|YP_004245836.1| - 9.5e-06 25.5 12.8 2.4e-05 24.2 2.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|325969644|ref|YP_004245836.1| - 4.6e-05 23.2 4.4 9e-05 22.3 3.0 1.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325969644|ref|YP_004245836.1| - 0.00011 22.1 8.7 0.0005 20.0 6.3 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325969644|ref|YP_004245836.1| - 0.00015 22.0 7.4 0.0074 16.6 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325969644|ref|YP_004245836.1| - 0.0014 18.9 1.9 0.0014 18.9 1.3 2.4 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|325969644|ref|YP_004245836.1| - 0.0082 16.5 11.8 0.16 12.4 8.2 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain TatD_DNase PF01026.16 gi|325969645|ref|YP_004245837.1| - 5.7e-51 173.1 0.0 6.4e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Ribosomal_S17 PF00366.15 gi|325969646|ref|YP_004245838.1| - 9.7e-16 57.5 3.4 1.4e-15 57.0 2.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Peptidase_M11 PF05548.6 gi|325969646|ref|YP_004245838.1| - 0.0057 15.6 0.1 0.0074 15.2 0.0 1.1 1 0 0 1 1 1 1 Gametolysin peptidase M11 zf-C3H1 PF10650.4 gi|325969646|ref|YP_004245838.1| - 0.035 13.5 1.0 0.057 12.9 0.7 1.3 1 0 0 1 1 1 0 Putative zinc-finger domain PALP PF00291.20 gi|325969647|ref|YP_004245839.1| - 2.7e-41 141.7 0.0 3.5e-41 141.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pep3_Vps18 PF05131.9 gi|325969648|ref|YP_004245840.1| - 0.11 11.8 0.1 0.14 11.6 0.1 1.2 1 0 0 1 1 1 0 Pep3/Vps18/deep orange family Ceramidase_alk PF04734.8 gi|325969648|ref|YP_004245840.1| - 0.13 10.1 0.1 0.14 10.0 0.1 1.0 1 0 0 1 1 1 0 Neutral/alkaline non-lysosomal ceramidase Aminotran_3 PF00202.16 gi|325969649|ref|YP_004245841.1| - 6.5e-105 350.7 0.0 7.8e-105 350.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Pico_P2B PF01552.12 gi|325969650|ref|YP_004245842.1| - 0.1 12.7 0.8 0.54 10.4 0.2 2.2 2 0 0 2 2 2 0 Picornavirus 2B protein Bac_Ubq_Cox PF01654.12 gi|325969652|ref|YP_004245844.1| - 2.9e-12 45.7 18.9 2.9e-12 45.7 13.1 2.6 2 1 0 2 2 2 1 Bacterial Cytochrome Ubiquinol Oxidase Bac_Ubq_Cox PF01654.12 gi|325969653|ref|YP_004245845.1| - 2.8e-59 200.7 37.1 4.8e-57 193.3 25.7 2.0 1 1 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase Pyr_redox_2 PF07992.9 gi|325969654|ref|YP_004245846.1| - 3.8e-33 115.0 3.0 2.1e-15 57.1 0.0 3.9 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|325969654|ref|YP_004245846.1| - 1.8e-19 69.8 6.5 2e-15 56.9 0.3 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|325969654|ref|YP_004245846.1| - 6.2e-16 58.4 0.0 1.4e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|325969654|ref|YP_004245846.1| - 2.9e-13 50.3 0.3 0.0011 19.1 0.0 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|325969654|ref|YP_004245846.1| - 1.5e-09 36.8 5.4 0.00033 19.2 0.5 3.8 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.19 gi|325969654|ref|YP_004245846.1| - 1.9e-09 36.9 7.1 0.00068 18.6 0.2 3.9 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|325969654|ref|YP_004245846.1| - 2.4e-07 30.6 3.3 0.23 11.2 0.0 4.1 4 0 0 4 4 4 3 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|325969654|ref|YP_004245846.1| - 2.5e-06 26.5 7.2 0.00027 19.8 0.5 3.5 4 0 0 4 4 4 2 FAD binding domain NAD_binding_8 PF13450.1 gi|325969654|ref|YP_004245846.1| - 3.6e-06 26.9 0.2 0.0011 18.8 0.0 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.14 gi|325969654|ref|YP_004245846.1| - 0.00032 19.9 0.1 0.0051 15.9 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|325969654|ref|YP_004245846.1| - 0.00037 19.5 1.6 0.0023 16.8 0.2 2.5 2 1 0 3 3 3 1 Lycopene cyclase protein K_oxygenase PF13434.1 gi|325969654|ref|YP_004245846.1| - 0.00059 18.8 0.1 0.0072 15.2 0.0 2.5 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|325969654|ref|YP_004245846.1| - 0.0011 19.1 0.1 0.31 11.3 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding GIDA PF01134.17 gi|325969654|ref|YP_004245846.1| - 0.0013 17.6 6.9 0.021 13.6 0.5 3.7 3 1 1 4 4 4 1 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.9 gi|325969654|ref|YP_004245846.1| - 0.0015 17.9 1.1 0.0047 16.3 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|325969654|ref|YP_004245846.1| - 0.0032 17.4 1.3 1.9 8.5 0.1 2.7 2 1 0 2 2 2 2 TrkA-N domain FAD_binding_3 PF01494.14 gi|325969654|ref|YP_004245846.1| - 0.013 14.5 3.2 0.92 8.4 0.2 2.3 2 0 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.9 gi|325969654|ref|YP_004245846.1| - 0.019 13.6 0.2 0.019 13.6 0.2 1.8 2 0 0 2 2 2 0 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.18 gi|325969654|ref|YP_004245846.1| - 0.025 14.3 0.3 1.3 8.7 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thi4 PF01946.12 gi|325969654|ref|YP_004245846.1| - 0.025 13.6 1.5 0.12 11.4 0.1 2.4 2 0 0 2 2 2 0 Thi4 family F420_oxidored PF03807.12 gi|325969654|ref|YP_004245846.1| - 0.028 14.8 1.4 0.29 11.5 0.1 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|325969654|ref|YP_004245846.1| - 0.048 13.0 0.0 9.4 5.5 0.0 2.5 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|325969654|ref|YP_004245846.1| - 0.12 12.0 2.8 0.25 10.9 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|325969654|ref|YP_004245846.1| - 0.15 11.0 0.4 2.8 6.8 0.0 2.7 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase ApbA PF02558.11 gi|325969654|ref|YP_004245846.1| - 0.21 11.0 1.0 0.49 9.8 0.0 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|325969654|ref|YP_004245846.1| - 0.36 10.8 2.1 0.53 10.2 0.0 2.3 3 0 0 3 3 2 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|325969654|ref|YP_004245846.1| - 0.38 10.3 3.9 0.23 11.0 0.3 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TetR_C_5 PF08360.6 gi|325969655|ref|YP_004245847.1| - 0.017 15.0 2.5 0.045 13.7 0.8 2.1 2 0 0 2 2 2 0 QacR-like protein, C-terminal region Rubrerythrin PF02915.12 gi|325969655|ref|YP_004245847.1| - 0.03 14.6 0.7 0.14 12.4 0.1 2.0 2 0 0 2 2 2 0 Rubrerythrin HSBP1 PF06825.7 gi|325969655|ref|YP_004245847.1| - 0.039 13.5 0.0 1.8 8.1 0.0 2.5 2 1 0 2 2 2 0 Heat shock factor binding protein 1 Ferritin PF00210.19 gi|325969655|ref|YP_004245847.1| - 0.072 12.8 0.8 0.16 11.7 0.6 1.6 1 0 0 1 1 1 0 Ferritin-like domain FAD_binding_7 PF03441.9 gi|325969655|ref|YP_004245847.1| - 0.087 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain of DNA photolyase AA_permease_2 PF13520.1 gi|325969656|ref|YP_004245848.1| - 5.9e-17 61.3 68.4 9.2e-17 60.6 47.4 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|325969656|ref|YP_004245848.1| - 4.4e-11 41.8 58.4 7.1e-11 41.1 40.5 1.3 1 0 0 1 1 1 1 Amino acid permease Thoc2 PF11732.3 gi|325969656|ref|YP_004245848.1| - 0.032 14.0 0.2 0.12 12.2 0.1 1.9 1 0 0 1 1 1 0 Transcription- and export-related complex subunit DUF650 PF04894.7 gi|325969658|ref|YP_004245850.1| - 1.3e-101 339.7 0.0 1.6e-101 339.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|325969658|ref|YP_004245850.1| - 3e-37 126.6 0.0 6.4e-37 125.5 0.0 1.6 2 0 0 2 2 2 1 Archaeal protein of unknown function (DUF651) Radical_SAM PF04055.16 gi|325969659|ref|YP_004245851.1| - 7.2e-08 32.7 0.1 1.4e-07 31.8 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|325969659|ref|YP_004245851.1| - 0.064 12.7 6.2 4.6 6.7 3.4 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1848) Spheroidin PF05541.7 gi|325969661|ref|YP_004245853.1| - 0.076 10.6 0.0 0.076 10.6 0.0 1.0 1 0 0 1 1 1 0 Entomopoxvirus spheroidin protein PIN PF01850.16 gi|325969661|ref|YP_004245853.1| - 0.16 12.2 0.3 0.17 12.2 0.2 1.1 1 0 0 1 1 1 0 PIN domain MoCF_biosynth PF00994.19 gi|325969663|ref|YP_004245855.1| - 2.2e-32 111.4 0.0 3e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Resolvase PF00239.16 gi|325969665|ref|YP_004245857.1| - 1.4e-30 106.0 0.2 1.8e-30 105.6 0.1 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.1 gi|325969665|ref|YP_004245857.1| - 5.3e-05 22.7 0.1 5.3e-05 22.7 0.1 2.3 3 0 0 3 3 2 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|325969665|ref|YP_004245857.1| - 0.00012 21.3 3.0 0.045 13.0 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_28 PF13518.1 gi|325969665|ref|YP_004245857.1| - 0.00022 21.1 0.2 0.00054 19.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|325969665|ref|YP_004245857.1| - 0.00058 19.2 0.7 0.0015 17.9 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Complex1_LYR PF05347.10 gi|325969665|ref|YP_004245857.1| - 0.0021 17.8 2.4 0.0024 17.6 0.1 2.3 4 0 0 4 4 2 1 Complex 1 protein (LYR family) zf-ISL3 PF14690.1 gi|325969665|ref|YP_004245857.1| - 0.014 15.4 1.5 3 7.9 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|325969665|ref|YP_004245857.1| - 0.016 14.4 1.2 0.32 10.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HTH_7 PF02796.10 gi|325969665|ref|YP_004245857.1| - 0.032 14.0 0.1 0.057 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase GerE PF00196.14 gi|325969665|ref|YP_004245857.1| - 0.074 12.3 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|325969665|ref|YP_004245857.1| - 0.074 12.5 0.1 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_29 PF13551.1 gi|325969665|ref|YP_004245857.1| - 0.077 13.1 0.1 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn helix zinc_ribbon_2 PF13240.1 gi|325969665|ref|YP_004245857.1| - 0.079 12.4 0.8 0.69 9.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|325969665|ref|YP_004245857.1| - 0.08 12.7 0.2 12 5.7 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|325969665|ref|YP_004245857.1| - 0.088 12.1 1.7 6 6.2 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HTH_38 PF13936.1 gi|325969665|ref|YP_004245857.1| - 0.089 12.3 0.1 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain POTRA_2 PF08479.6 gi|325969665|ref|YP_004245857.1| - 0.11 12.1 0.0 0.36 10.5 0.0 1.8 1 0 0 1 1 1 0 POTRA domain, ShlB-type zf-TFIIB PF13453.1 gi|325969665|ref|YP_004245857.1| - 0.28 10.4 3.5 3 7.1 2.6 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger 2-Hacid_dh_C PF02826.14 gi|325969666|ref|YP_004245858.1| - 3.1e-58 195.8 0.0 5e-58 195.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|325969666|ref|YP_004245858.1| - 1.8e-34 118.0 0.2 2.1e-34 117.8 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|325969666|ref|YP_004245858.1| - 3.3e-07 30.3 1.4 5.7e-07 29.5 0.4 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|325969666|ref|YP_004245858.1| - 1e-06 28.6 1.0 1e-06 28.6 0.7 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|325969666|ref|YP_004245858.1| - 0.0022 17.3 0.5 0.0047 16.3 0.1 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|325969666|ref|YP_004245858.1| - 0.0031 17.0 0.8 0.53 9.8 0.1 2.5 1 1 1 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|325969666|ref|YP_004245858.1| - 0.013 15.8 0.0 0.028 14.7 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain Gp_dh_N PF00044.19 gi|325969666|ref|YP_004245858.1| - 0.018 15.0 0.3 0.03 14.2 0.2 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|325969666|ref|YP_004245858.1| - 0.023 14.3 0.6 0.044 13.4 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|325969666|ref|YP_004245858.1| - 0.03 14.3 0.2 0.13 12.3 0.2 2.1 1 0 0 1 1 1 0 TrkA-N domain DrsE PF02635.10 gi|325969668|ref|YP_004245860.1| - 5.2e-21 74.9 0.1 5.7e-21 74.8 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|325969668|ref|YP_004245860.1| - 0.0042 16.8 0.0 0.006 16.3 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family SBP_bac_11 PF13531.1 gi|325969669|ref|YP_004245861.1| - 5e-08 32.8 0.0 6.7e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein AP_endonuc_2 PF01261.19 gi|325969670|ref|YP_004245862.1| - 9.7e-22 77.3 0.1 1.3e-21 76.8 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.9 gi|325969670|ref|YP_004245862.1| - 0.00012 21.1 0.0 0.00024 20.2 0.0 1.4 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF4121 PF13497.1 gi|325969670|ref|YP_004245862.1| - 0.0082 15.1 0.1 0.013 14.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4121) Macro_2 PF14519.1 gi|325969670|ref|YP_004245862.1| - 0.021 13.9 0.1 0.045 12.8 0.0 1.5 1 1 0 1 1 1 0 Macro-like domain DUF4253 PF14062.1 gi|325969670|ref|YP_004245862.1| - 0.12 11.9 0.1 0.33 10.6 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) DDRGK PF09756.4 gi|325969672|ref|YP_004245864.1| - 0.077 12.3 0.4 0.12 11.7 0.2 1.4 1 1 0 1 1 1 0 DDRGK domain Tic20 PF09685.5 gi|325969673|ref|YP_004245865.1| - 9.3e-10 38.4 12.3 1.1e-09 38.1 8.6 1.1 1 0 0 1 1 1 1 Tic20-like protein CAAD PF14159.1 gi|325969673|ref|YP_004245865.1| - 2.4 7.8 10.6 5.6 6.6 3.8 2.1 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase T_cell_tran_alt PF15128.1 gi|325969673|ref|YP_004245865.1| - 3.3 7.2 6.9 1.8 8.0 2.6 2.0 1 1 1 2 2 2 0 T-cell leukemia translocation-altered Wx5_PLAF3D7 PF09688.5 gi|325969674|ref|YP_004245866.1| - 0.067 13.1 0.1 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (Wx5_PLAF3D7) TPP_enzyme_N PF02776.13 gi|325969674|ref|YP_004245866.1| - 0.1 12.1 0.0 0.21 11.0 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CAMP_factor PF07373.6 gi|325969676|ref|YP_004245868.1| - 0.002 17.6 0.2 0.0022 17.5 0.1 1.1 1 0 0 1 1 1 1 CAMP factor (Cfa) TFR_dimer PF04253.10 gi|325969676|ref|YP_004245868.1| - 0.032 13.7 0.0 0.037 13.5 0.0 1.1 1 0 0 1 1 1 0 Transferrin receptor-like dimerisation domain DASH_Dad1 PF08649.5 gi|325969676|ref|YP_004245868.1| - 0.033 13.8 0.9 4.8 6.9 0.1 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad1 HsbA PF12296.3 gi|325969676|ref|YP_004245868.1| - 0.07 12.9 0.6 0.091 12.6 0.4 1.3 1 0 0 1 1 1 0 Hydrophobic surface binding protein A DUF972 PF06156.8 gi|325969676|ref|YP_004245868.1| - 0.097 13.0 0.5 0.12 12.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Reo_sigmaC PF04582.7 gi|325969676|ref|YP_004245868.1| - 0.16 11.1 0.7 0.17 11.0 0.5 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein FliD_N PF02465.13 gi|325969676|ref|YP_004245868.1| - 0.18 12.1 3.2 1.4 9.3 2.3 1.9 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus FlaC_arch PF05377.6 gi|325969676|ref|YP_004245868.1| - 0.39 10.6 4.1 0.67 9.8 0.3 2.3 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Robl_LC7 PF03259.12 gi|325969677|ref|YP_004245869.1| - 3e-05 23.4 0.1 3.7e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.5 gi|325969677|ref|YP_004245869.1| - 0.00014 21.4 0.2 0.00016 21.2 0.2 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting CbiA PF01656.18 gi|325969679|ref|YP_004245871.1| - 2.6e-18 66.1 0.0 3.5e-18 65.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|325969679|ref|YP_004245871.1| - 4.7e-12 46.1 0.2 2.9e-11 43.5 0.1 2.3 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|325969679|ref|YP_004245871.1| - 3.5e-06 26.3 0.1 6.5e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|325969679|ref|YP_004245871.1| - 1e-05 24.7 4.8 0.00013 21.0 0.7 3.5 2 2 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.6 gi|325969679|ref|YP_004245871.1| - 1.1e-05 24.6 0.0 0.0026 16.8 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ AAA_25 PF13481.1 gi|325969679|ref|YP_004245871.1| - 0.00021 20.7 0.3 0.00044 19.7 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|325969679|ref|YP_004245871.1| - 0.001 18.7 0.1 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain YhjQ PF06564.7 gi|325969679|ref|YP_004245871.1| - 0.0017 17.7 0.2 0.015 14.6 0.1 2.4 1 1 0 1 1 1 1 YhjQ protein AAA_14 PF13173.1 gi|325969679|ref|YP_004245871.1| - 0.0021 17.9 0.3 0.77 9.6 0.0 3.3 2 2 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|325969679|ref|YP_004245871.1| - 0.005 16.4 0.2 0.019 14.5 0.0 2.1 3 1 0 3 3 3 1 AAA domain VirC1 PF07015.6 gi|325969679|ref|YP_004245871.1| - 0.0053 15.8 0.1 0.0084 15.2 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_10 PF12846.2 gi|325969679|ref|YP_004245871.1| - 0.029 13.8 0.1 0.14 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain Zeta_toxin PF06414.7 gi|325969679|ref|YP_004245871.1| - 0.13 11.3 0.1 0.28 10.2 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin GATase_6 PF13522.1 gi|325969680|ref|YP_004245872.1| - 5e-06 26.5 0.0 8.2e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Crystall PF00030.14 gi|325969680|ref|YP_004245872.1| - 0.022 14.6 0.2 0.041 13.7 0.1 1.5 1 0 0 1 1 1 0 Beta/Gamma crystallin Radical_SAM PF04055.16 gi|325969681|ref|YP_004245873.1| - 9.5e-19 68.1 0.0 5.2e-18 65.7 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|325969681|ref|YP_004245873.1| - 3.3e-17 62.3 0.0 6.2e-17 61.4 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation DUF3883 PF13020.1 gi|325969681|ref|YP_004245873.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) UPF0066 PF01980.11 gi|325969682|ref|YP_004245874.1| - 4.3e-36 123.5 0.0 6.2e-36 122.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 PPC PF04151.10 gi|325969683|ref|YP_004245875.1| - 0.3 12.0 4.0 1.1 10.2 0.4 3.1 2 2 1 3 3 3 0 Bacterial pre-peptidase C-terminal domain Tail_P2_I PF09684.5 gi|325969686|ref|YP_004245878.1| - 0.042 13.3 0.0 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 Phage tail protein (Tail_P2_I) Methyltransf_23 PF13489.1 gi|325969689|ref|YP_004245881.1| - 1.4e-17 63.8 0.0 1.8e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|325969689|ref|YP_004245881.1| - 2.7e-15 56.6 0.0 4.7e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|325969689|ref|YP_004245881.1| - 4.6e-12 46.2 0.0 8.3e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325969689|ref|YP_004245881.1| - 1e-10 41.3 0.0 1.8e-10 40.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|325969689|ref|YP_004245881.1| - 1.9e-09 38.1 0.0 3.4e-09 37.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|325969689|ref|YP_004245881.1| - 3.2e-07 29.7 0.0 4.2e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|325969689|ref|YP_004245881.1| - 0.00019 21.7 0.0 0.00035 20.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|325969689|ref|YP_004245881.1| - 0.0012 18.8 0.0 0.0027 17.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|325969689|ref|YP_004245881.1| - 0.016 14.4 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.14 gi|325969689|ref|YP_004245881.1| - 0.031 13.8 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|325969689|ref|YP_004245881.1| - 0.087 11.8 0.0 0.16 10.9 0.0 1.4 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|325969689|ref|YP_004245881.1| - 0.16 11.6 0.0 0.44 10.2 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain PmbA_TldD PF01523.11 gi|325969691|ref|YP_004245883.1| - 4e-34 118.2 0.1 5.2e-34 117.8 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Thy1 PF02511.10 gi|325969691|ref|YP_004245883.1| - 0.15 11.4 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 Thymidylate synthase complementing protein PmbA_TldD PF01523.11 gi|325969692|ref|YP_004245884.1| - 2.7e-56 190.9 0.6 3.5e-56 190.6 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase bPH_2 PF03703.9 gi|325969693|ref|YP_004245885.1| - 1.6e-05 24.7 0.0 2.4e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF2208 PF09973.4 gi|325969693|ref|YP_004245885.1| - 0.014 14.6 4.3 0.018 14.3 3.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) TctA PF01970.11 gi|325969693|ref|YP_004245885.1| - 0.07 11.5 0.8 0.088 11.1 0.5 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family ABC_tran PF00005.22 gi|325969694|ref|YP_004245886.1| - 8.4e-27 94.1 0.0 1.1e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|325969694|ref|YP_004245886.1| - 1.3e-21 76.6 0.1 2.2e-21 75.9 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|325969694|ref|YP_004245886.1| - 5.8e-14 52.7 0.5 1.1e-11 45.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325969694|ref|YP_004245886.1| - 7.1e-07 28.6 0.0 1.4e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|325969694|ref|YP_004245886.1| - 6.7e-06 26.2 0.0 6.5e-05 23.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|325969694|ref|YP_004245886.1| - 2e-05 23.9 0.0 3.7e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|325969694|ref|YP_004245886.1| - 4.8e-05 23.4 0.0 0.00012 22.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|325969694|ref|YP_004245886.1| - 6e-05 22.5 0.1 0.001 18.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|325969694|ref|YP_004245886.1| - 7.3e-05 22.3 0.5 0.046 13.1 0.2 2.4 1 1 0 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|325969694|ref|YP_004245886.1| - 0.00048 19.3 0.2 0.011 14.8 0.0 2.4 1 1 2 3 3 3 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|325969694|ref|YP_004245886.1| - 0.0006 19.2 0.0 0.027 13.8 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|325969694|ref|YP_004245886.1| - 0.004 17.4 0.0 0.0092 16.2 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|325969694|ref|YP_004245886.1| - 0.0041 17.3 0.0 0.024 14.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|325969694|ref|YP_004245886.1| - 0.0045 17.7 0.0 0.0087 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|325969694|ref|YP_004245886.1| - 0.015 14.9 0.3 0.15 11.7 0.0 2.1 1 1 1 2 2 2 0 NACHT domain DUF87 PF01935.12 gi|325969694|ref|YP_004245886.1| - 0.031 14.0 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF87 Mg_chelatase PF01078.16 gi|325969694|ref|YP_004245886.1| - 0.035 13.2 0.1 0.11 11.6 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|325969694|ref|YP_004245886.1| - 0.037 13.7 0.1 0.088 12.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|325969694|ref|YP_004245886.1| - 0.067 12.3 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|325969694|ref|YP_004245886.1| - 0.068 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|325969694|ref|YP_004245886.1| - 0.087 12.7 0.1 0.14 12.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|325969694|ref|YP_004245886.1| - 0.087 12.5 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|325969694|ref|YP_004245886.1| - 0.13 11.7 0.1 0.31 10.4 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|325969695|ref|YP_004245887.1| - 2.4e-33 115.3 0.0 3.3e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|325969695|ref|YP_004245887.1| - 3.2e-20 72.2 0.1 5.8e-20 71.4 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|325969695|ref|YP_004245887.1| - 1.8e-11 44.5 0.2 2.5e-09 37.5 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|325969695|ref|YP_004245887.1| - 3.3e-06 26.4 0.3 1.3e-05 24.5 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|325969695|ref|YP_004245887.1| - 1.1e-05 25.5 1.4 0.00027 21.0 1.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325969695|ref|YP_004245887.1| - 0.00012 21.5 0.1 0.00021 20.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|325969695|ref|YP_004245887.1| - 0.00065 18.2 0.0 0.16 10.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|325969695|ref|YP_004245887.1| - 0.0014 18.4 0.1 0.0091 15.8 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|325969695|ref|YP_004245887.1| - 0.0018 18.5 0.0 0.023 14.9 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|325969695|ref|YP_004245887.1| - 0.0028 16.8 0.0 0.0046 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|325969695|ref|YP_004245887.1| - 0.0056 16.6 0.9 0.016 15.1 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|325969695|ref|YP_004245887.1| - 0.0058 16.0 0.1 0.59 9.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|325969695|ref|YP_004245887.1| - 0.008 16.4 0.0 0.015 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|325969695|ref|YP_004245887.1| - 0.034 14.9 0.0 0.085 13.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_10 PF12846.2 gi|325969695|ref|YP_004245887.1| - 0.036 13.4 0.1 0.13 11.6 0.0 1.9 1 1 1 2 2 2 0 AAA-like domain Miro PF08477.8 gi|325969695|ref|YP_004245887.1| - 0.039 14.4 0.0 1.3 9.5 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein AAA_23 PF13476.1 gi|325969695|ref|YP_004245887.1| - 0.041 14.1 0.0 0.064 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|325969695|ref|YP_004245887.1| - 0.059 12.3 0.4 7.1 5.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain PduV-EutP PF10662.4 gi|325969695|ref|YP_004245887.1| - 0.067 12.6 0.1 0.8 9.1 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|325969695|ref|YP_004245887.1| - 0.075 12.6 0.7 0.29 10.7 0.1 1.9 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|325969695|ref|YP_004245887.1| - 0.085 12.7 0.6 0.31 10.8 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|325969695|ref|YP_004245887.1| - 0.13 12.0 0.3 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|325969695|ref|YP_004245887.1| - 0.14 11.5 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SBP_bac_5 PF00496.17 gi|325969696|ref|YP_004245888.1| - 6.3e-66 222.7 4.7 1.1e-65 221.9 3.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|325969697|ref|YP_004245889.1| - 8.8e-45 152.4 15.4 8.8e-45 152.4 10.7 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|325969698|ref|YP_004245890.1| - 3.3e-26 91.9 12.1 3.3e-26 91.9 8.4 2.5 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.3 gi|325969698|ref|YP_004245890.1| - 2.6 7.1 6.4 0.68 9.0 1.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) US22 PF02393.11 gi|325969699|ref|YP_004245891.1| - 0.068 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 US22 like Abhydrolase_3 PF07859.8 gi|325969700|ref|YP_004245892.1| - 1.6e-74 250.0 0.0 1.9e-74 249.7 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.23 gi|325969700|ref|YP_004245892.1| - 1.6e-13 50.2 0.1 4.2e-13 48.8 0.1 1.6 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_5 PF12695.2 gi|325969700|ref|YP_004245892.1| - 1.4e-10 41.0 0.0 2.3e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Chlorophyllase2 PF12740.2 gi|325969700|ref|YP_004245892.1| - 3.9e-06 25.9 0.0 5.4e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.16 gi|325969700|ref|YP_004245892.1| - 1.5e-05 24.3 0.0 0.00015 21.0 0.0 2.0 1 1 0 1 1 1 1 Prolyl oligopeptidase family DUF2424 PF10340.4 gi|325969700|ref|YP_004245892.1| - 0.00017 20.3 0.0 0.00022 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Chlorophyllase PF07224.6 gi|325969700|ref|YP_004245892.1| - 0.00058 18.7 0.0 0.00081 18.2 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase AXE1 PF05448.7 gi|325969700|ref|YP_004245892.1| - 0.0018 16.8 0.1 0.46 8.9 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Thioesterase PF00975.15 gi|325969700|ref|YP_004245892.1| - 0.0032 17.7 0.0 0.0045 17.2 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain DUF2974 PF11187.3 gi|325969700|ref|YP_004245892.1| - 0.031 13.6 0.0 0.051 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) FeoA PF04023.9 gi|325969701|ref|YP_004245893.1| - 1e-05 25.4 0.0 1.2e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.13 gi|325969702|ref|YP_004245894.1| - 2.2e-43 147.2 0.3 3.3e-43 146.6 0.2 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|325969702|ref|YP_004245894.1| - 4e-31 107.1 19.0 2.7e-22 78.7 5.7 2.7 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|325969702|ref|YP_004245894.1| - 3.5e-12 46.2 0.1 6.7e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|325969702|ref|YP_004245894.1| - 3e-05 23.3 0.1 5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.22 gi|325969702|ref|YP_004245894.1| - 0.0013 18.1 1.0 0.033 13.6 0.7 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|325969702|ref|YP_004245894.1| - 0.0089 16.5 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|325969702|ref|YP_004245894.1| - 0.028 13.6 0.0 0.074 12.2 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family ATP_bind_1 PF03029.12 gi|325969702|ref|YP_004245894.1| - 0.045 13.2 0.5 8.3 5.8 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|325969702|ref|YP_004245894.1| - 0.12 13.1 0.4 0.56 11.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain FeoB_C PF07664.7 gi|325969702|ref|YP_004245894.1| - 0.37 10.2 8.9 0.11 11.9 1.4 3.2 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus DUF1129 PF06570.6 gi|325969703|ref|YP_004245895.1| - 8.8 5.5 17.9 0.078 12.2 5.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) ALAD PF00490.16 gi|325969704|ref|YP_004245896.1| - 1.1e-147 491.1 0.1 1.3e-147 490.9 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_1_2 PF00155.16 gi|325969705|ref|YP_004245897.1| - 8.9e-45 153.2 0.0 1e-44 153.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|325969705|ref|YP_004245897.1| - 4.8e-17 61.6 0.0 6.6e-17 61.1 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.12 gi|325969705|ref|YP_004245897.1| - 0.00056 19.0 0.0 0.00083 18.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family AAA_10 PF12846.2 gi|325969706|ref|YP_004245898.1| - 1.6e-14 54.0 0.4 2.4e-14 53.4 0.3 1.2 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|325969706|ref|YP_004245898.1| - 9.7e-10 38.6 0.1 2.8e-09 37.1 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|325969706|ref|YP_004245898.1| - 5.6e-05 21.9 0.0 0.0002 20.0 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|325969706|ref|YP_004245898.1| - 6.6e-05 23.0 0.1 0.022 14.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|325969706|ref|YP_004245898.1| - 0.00076 19.6 0.4 0.38 10.9 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|325969706|ref|YP_004245898.1| - 0.0011 18.8 0.3 0.018 14.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|325969706|ref|YP_004245898.1| - 0.0018 17.0 0.0 0.0031 16.3 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_17 PF13207.1 gi|325969706|ref|YP_004245898.1| - 0.0035 18.1 0.2 0.0087 16.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|325969706|ref|YP_004245898.1| - 0.0061 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|325969706|ref|YP_004245898.1| - 0.0085 15.7 0.4 0.12 12.0 0.1 2.7 3 0 0 3 3 3 1 NACHT domain Zeta_toxin PF06414.7 gi|325969706|ref|YP_004245898.1| - 0.016 14.2 0.0 0.036 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.17 gi|325969706|ref|YP_004245898.1| - 0.017 15.3 0.0 0.05 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Arch_ATPase PF01637.13 gi|325969706|ref|YP_004245898.1| - 0.022 14.4 0.4 0.99 9.0 0.0 2.3 2 0 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|325969706|ref|YP_004245898.1| - 0.027 14.2 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|325969706|ref|YP_004245898.1| - 0.028 14.1 0.5 0.17 11.5 0.1 2.3 3 0 0 3 3 3 0 NTPase KAP_NTPase PF07693.9 gi|325969706|ref|YP_004245898.1| - 0.032 13.2 0.0 0.051 12.5 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain FtsK_SpoIIIE PF01580.13 gi|325969706|ref|YP_004245898.1| - 0.038 13.4 0.0 0.36 10.2 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family KaiC PF06745.8 gi|325969706|ref|YP_004245898.1| - 0.042 12.9 0.2 0.14 11.2 0.1 1.9 1 0 0 1 1 1 0 KaiC MTHFR PF02219.12 gi|325969707|ref|YP_004245899.1| - 0.013 14.5 0.1 0.17 10.9 0.0 2.0 1 1 0 1 1 1 0 Methylenetetrahydrofolate reductase DUF4159 PF13709.1 gi|325969707|ref|YP_004245899.1| - 0.053 12.6 0.0 0.071 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) RSF PF14876.1 gi|325969707|ref|YP_004245899.1| - 0.15 10.8 0.1 0.21 10.3 0.1 1.1 1 0 0 1 1 1 0 Respiratory growth transcriptional regulator ParA PF10609.4 gi|325969708|ref|YP_004245900.1| - 8.7e-28 96.0 0.0 2.5e-27 94.5 0.0 1.8 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|325969708|ref|YP_004245900.1| - 2.4e-13 49.9 0.0 3.7e-13 49.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|325969708|ref|YP_004245900.1| - 0.00029 19.9 0.7 0.00048 19.2 0.5 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|325969708|ref|YP_004245900.1| - 0.00041 20.3 0.0 0.0022 17.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|325969708|ref|YP_004245900.1| - 0.00052 19.5 0.2 0.00097 18.6 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain AAA_25 PF13481.1 gi|325969708|ref|YP_004245900.1| - 0.0043 16.4 0.1 0.016 14.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|325969708|ref|YP_004245900.1| - 0.066 12.2 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ Fer4_NifH PF00142.13 gi|325969708|ref|YP_004245900.1| - 0.077 12.1 0.1 0.29 10.2 0.0 1.9 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArgK PF03308.11 gi|325969708|ref|YP_004245900.1| - 0.085 11.6 0.3 0.15 10.8 0.2 1.3 1 0 0 1 1 1 0 ArgK protein AAA_26 PF13500.1 gi|325969708|ref|YP_004245900.1| - 0.13 11.8 0.2 8.3 5.9 0.1 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|325969708|ref|YP_004245900.1| - 0.16 11.3 0.1 0.38 10.1 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein GTP_EFTU PF00009.22 gi|325969709|ref|YP_004245901.1| - 7.9e-56 188.4 0.0 1.2e-55 187.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|325969709|ref|YP_004245901.1| - 8.7e-32 109.2 0.0 2.8e-31 107.5 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|325969709|ref|YP_004245901.1| - 1.7e-23 82.2 0.1 3.9e-23 81.0 0.0 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|325969709|ref|YP_004245901.1| - 3.1e-22 78.2 0.0 7.7e-22 76.9 0.0 1.7 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|325969709|ref|YP_004245901.1| - 5.6e-16 58.4 0.2 1.8e-15 56.7 0.1 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 DUF1617 PF07761.7 gi|325969709|ref|YP_004245901.1| - 0.06 13.3 0.0 0.32 11.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1617) Reprolysin_5 PF13688.1 gi|325969710|ref|YP_004245902.1| - 0.04 13.8 1.2 0.1 12.5 0.2 1.9 1 1 1 2 2 2 0 Metallo-peptidase family M12 SprT-like PF10263.4 gi|325969710|ref|YP_004245902.1| - 0.098 12.3 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 SprT-like family Lactamase_B PF00753.22 gi|325969711|ref|YP_004245903.1| - 1.2e-12 47.9 1.2 1.4e-12 47.6 0.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|325969711|ref|YP_004245903.1| - 6.6e-10 38.8 0.0 1.2e-09 37.9 0.0 1.5 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Toxin_6 PF05453.7 gi|325969711|ref|YP_004245903.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 BmTXKS1/BmP02 toxin family SWIM PF04434.12 gi|325969712|ref|YP_004245904.1| - 0.08 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 SWIM zinc finger Rifin_STEVOR PF02009.11 gi|325969713|ref|YP_004245905.1| - 0.031 13.9 1.4 0.036 13.6 0.9 1.2 1 0 0 1 1 1 0 Rifin/stevor family MaoC_dehydratas PF01575.14 gi|325969714|ref|YP_004245906.1| - 5.2e-25 87.2 0.0 6.8e-25 86.8 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|325969714|ref|YP_004245906.1| - 3.7e-10 39.7 0.0 5.9e-10 39.0 0.0 1.3 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.17 gi|325969714|ref|YP_004245906.1| - 5.9e-05 23.1 0.1 0.00026 21.0 0.1 2.0 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|325969714|ref|YP_004245906.1| - 0.0052 17.2 0.0 0.0061 17.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Radical_SAM PF04055.16 gi|325969715|ref|YP_004245907.1| - 5.7e-22 78.6 0.1 7.6e-22 78.2 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|325969715|ref|YP_004245907.1| - 6e-05 23.0 0.0 9.2e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|325969715|ref|YP_004245907.1| - 0.0048 17.0 0.1 0.012 15.6 0.1 1.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain DUF336 PF03928.9 gi|325969717|ref|YP_004245909.1| - 8.2e-46 155.0 0.0 6.7e-26 90.6 0.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF336) DAO PF01266.19 gi|325969718|ref|YP_004245910.1| - 8e-48 163.1 0.0 1e-47 162.8 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|325969718|ref|YP_004245910.1| - 1.4e-09 37.7 0.1 3.9e-09 36.3 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|325969718|ref|YP_004245910.1| - 5.3e-09 36.3 0.4 0.00083 19.7 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|325969718|ref|YP_004245910.1| - 8.2e-07 29.0 0.0 3e-05 24.0 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|325969718|ref|YP_004245910.1| - 1.5e-06 27.3 0.3 0.00019 20.4 0.1 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|325969718|ref|YP_004245910.1| - 2.8e-06 26.6 0.0 0.00013 21.1 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|325969718|ref|YP_004245910.1| - 1.5e-05 23.7 0.8 0.0087 14.5 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|325969718|ref|YP_004245910.1| - 0.00012 22.2 0.0 0.026 14.5 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|325969718|ref|YP_004245910.1| - 0.00031 19.7 0.5 0.0024 16.7 0.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A TrkA_N PF02254.13 gi|325969718|ref|YP_004245910.1| - 0.00051 20.0 0.2 0.0011 18.9 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain Trp_halogenase PF04820.9 gi|325969718|ref|YP_004245910.1| - 0.00092 17.9 0.6 0.32 9.5 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase CPSase_L_chain PF00289.17 gi|325969718|ref|YP_004245910.1| - 0.0022 18.1 0.8 0.01 15.9 0.0 2.3 3 0 0 3 3 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_9 PF13454.1 gi|325969718|ref|YP_004245910.1| - 0.0025 17.6 0.7 0.047 13.4 0.1 2.5 3 0 0 3 3 3 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|325969718|ref|YP_004245910.1| - 0.0025 16.9 0.1 0.0094 15.0 0.0 1.9 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|325969718|ref|YP_004245910.1| - 0.0058 15.5 0.4 0.017 13.9 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|325969718|ref|YP_004245910.1| - 0.0075 15.3 0.0 3 6.8 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|325969718|ref|YP_004245910.1| - 0.01 15.4 0.3 0.052 13.1 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDI PF00996.13 gi|325969718|ref|YP_004245910.1| - 0.045 12.0 0.0 0.075 11.3 0.0 1.4 1 0 0 1 1 1 0 GDP dissociation inhibitor LigB PF02900.13 gi|325969718|ref|YP_004245910.1| - 0.13 11.1 0.0 0.46 9.4 0.0 1.8 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Radical_SAM PF04055.16 gi|325969719|ref|YP_004245911.1| - 2.9e-21 76.3 0.2 7.9e-21 74.9 0.1 1.8 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|325969719|ref|YP_004245911.1| - 2.5e-07 30.7 0.0 5.4e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|325969719|ref|YP_004245911.1| - 4.4e-06 26.8 0.0 9.5e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_27 PF13463.1 gi|325969721|ref|YP_004245913.1| - 0.00051 20.3 0.0 0.00068 19.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|325969721|ref|YP_004245913.1| - 0.065 13.3 0.0 0.092 12.8 0.0 1.2 1 0 0 1 1 1 0 Mrr N-terminal domain BPD_transp_1 PF00528.17 gi|325969722|ref|YP_004245914.1| - 3.4e-18 65.8 50.9 3.4e-12 46.2 15.2 4.3 1 1 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|325969723|ref|YP_004245915.1| - 4.9e-15 56.0 0.3 1.2e-14 54.7 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|325969723|ref|YP_004245915.1| - 1.4e-09 38.1 0.3 3.1e-09 36.9 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|325969723|ref|YP_004245915.1| - 0.017 14.7 0.3 0.63 9.6 0.0 2.5 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Lactamase_B_2 PF12706.2 gi|325969724|ref|YP_004245916.1| - 4.7e-33 114.3 0.1 5.7e-33 114.0 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|325969724|ref|YP_004245916.1| - 9.6e-17 61.2 1.5 7.2e-16 58.4 1.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|325969724|ref|YP_004245916.1| - 4.6e-11 42.7 0.0 6.3e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.1 gi|325969724|ref|YP_004245916.1| - 0.0078 15.6 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease TctB PF07331.6 gi|325969725|ref|YP_004245917.1| - 0.1 12.2 12.5 0.15 11.6 8.7 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF1345 PF07077.6 gi|325969725|ref|YP_004245917.1| - 0.15 11.5 6.0 0.2 11.1 4.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1345) DUF2231 PF09990.4 gi|325969725|ref|YP_004245917.1| - 4.2 7.7 11.6 7.9 6.8 7.6 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2231) DUF485 PF04341.7 gi|325969725|ref|YP_004245917.1| - 5.1 6.8 10.6 0.38 10.4 3.6 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF485 Epimerase PF01370.16 gi|325969726|ref|YP_004245918.1| - 5e-18 65.3 0.0 6.8e-18 64.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|325969726|ref|YP_004245918.1| - 9.7e-08 31.2 0.0 1.4e-07 30.6 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|325969726|ref|YP_004245918.1| - 2.4e-07 29.9 0.0 8.4e-07 28.1 0.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|325969726|ref|YP_004245918.1| - 6.8e-06 26.2 0.0 9.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|325969726|ref|YP_004245918.1| - 0.002 18.2 0.0 0.01 15.9 0.0 2.0 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|325969726|ref|YP_004245918.1| - 0.009 15.0 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|325969726|ref|YP_004245918.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase MFS_1 PF07690.11 gi|325969727|ref|YP_004245919.1| - 1.9e-45 155.1 98.1 1.6e-38 132.3 47.4 3.5 2 1 1 3 3 3 3 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325969727|ref|YP_004245919.1| - 9.3e-06 24.4 33.5 0.00015 20.4 12.0 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|325969727|ref|YP_004245919.1| - 6.5e-05 21.2 9.1 6.5e-05 21.2 6.3 2.6 2 0 0 2 2 2 2 Transmembrane secretion effector ENTH PF01417.15 gi|325969728|ref|YP_004245920.1| - 0.037 13.9 0.1 0.037 13.9 0.0 1.1 1 0 0 1 1 1 0 ENTH domain WG_beta_rep PF14903.1 gi|325969728|ref|YP_004245920.1| - 0.037 14.2 0.2 0.046 13.9 0.1 1.3 1 0 0 1 1 1 0 WG containing repeat FMN_dh PF01070.13 gi|325969729|ref|YP_004245921.1| - 2.8e-28 98.7 0.0 1.7e-17 63.3 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|325969729|ref|YP_004245921.1| - 3.1e-07 29.6 0.8 8.2e-06 24.9 0.3 2.2 2 0 0 2 2 2 1 Conserved region in glutamate synthase IMPDH PF00478.20 gi|325969729|ref|YP_004245921.1| - 0.00018 20.5 4.2 0.00069 18.5 1.8 2.4 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain CW_binding_2 PF04122.7 gi|325969729|ref|YP_004245921.1| - 0.0065 16.6 0.1 0.08 13.1 0.0 2.7 2 2 0 2 2 2 1 Putative cell wall binding repeat 2 DHO_dh PF01180.16 gi|325969729|ref|YP_004245921.1| - 0.31 9.9 5.3 0.26 10.1 2.3 1.9 2 1 0 2 2 2 0 Dihydroorotate dehydrogenase Zn_Tnp_IS1595 PF12760.2 gi|325969730|ref|YP_004245922.1| - 0.00035 20.3 0.1 0.007 16.1 0.1 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|325969730|ref|YP_004245922.1| - 0.00094 18.7 3.5 0.13 11.9 2.5 2.3 1 1 0 1 1 1 1 Transcription factor S-II (TFIIS) DUF2387 PF09526.5 gi|325969730|ref|YP_004245922.1| - 0.0019 18.0 0.1 0.0035 17.2 0.0 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Cpn60_TCP1 PF00118.19 gi|325969730|ref|YP_004245922.1| - 0.013 14.1 0.1 0.015 13.9 0.1 1.1 1 0 0 1 1 1 0 TCP-1/cpn60 chaperonin family OrfB_Zn_ribbon PF07282.6 gi|325969730|ref|YP_004245922.1| - 0.018 14.7 0.1 0.048 13.3 0.1 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|325969730|ref|YP_004245922.1| - 0.038 13.2 1.3 0.098 11.9 0.9 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding DUF87 PF01935.12 gi|325969730|ref|YP_004245922.1| - 0.062 13.1 0.1 0.074 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 Zn-ribbon_8 PF09723.5 gi|325969730|ref|YP_004245922.1| - 0.073 13.0 0.9 3.9 7.5 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|325969730|ref|YP_004245922.1| - 0.098 12.9 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar HypA PF01155.14 gi|325969730|ref|YP_004245922.1| - 0.099 12.3 0.9 4.6 6.9 0.8 2.8 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|325969730|ref|YP_004245922.1| - 0.14 12.0 0.7 5.8 6.8 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin zf-HYPF PF07503.7 gi|325969730|ref|YP_004245922.1| - 0.28 10.6 0.1 0.28 10.6 0.1 2.2 3 0 0 3 3 3 0 HypF finger DUF2752 PF10825.3 gi|325969730|ref|YP_004245922.1| - 0.29 11.1 2.5 0.48 10.4 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2752) Ribosomal_L2_C PF03947.13 gi|325969731|ref|YP_004245923.1| - 9.4e-39 132.1 0.5 1.6e-38 131.4 0.3 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|325969731|ref|YP_004245923.1| - 9.5e-12 44.7 0.0 2e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain tRNA_int_endo PF01974.12 gi|325969732|ref|YP_004245924.1| - 3.1e-08 33.2 0.0 5e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain Radical_SAM PF04055.16 gi|325969734|ref|YP_004245926.1| - 2.4e-12 47.3 0.0 9.5e-12 45.3 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|325969734|ref|YP_004245926.1| - 5.3e-07 29.8 0.0 9e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|325969734|ref|YP_004245926.1| - 2.3e-06 27.6 0.0 4.1e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rhomboid PF01694.17 gi|325969735|ref|YP_004245927.1| - 4.5e-21 75.4 12.1 4.5e-21 75.4 8.4 1.5 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|325969735|ref|YP_004245927.1| - 0.00012 22.3 0.5 0.00012 22.3 0.4 2.1 3 0 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) Romo1 PF10247.4 gi|325969735|ref|YP_004245927.1| - 0.073 13.2 4.1 4.3 7.6 0.1 2.5 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Ilm1 PF10311.4 gi|325969735|ref|YP_004245927.1| - 0.48 9.9 3.3 1.3 8.5 2.2 1.7 1 1 0 1 1 1 0 Increased loss of mitochondrial DNA protein 1 DUF1361 PF07099.6 gi|325969736|ref|YP_004245928.1| - 0.004 16.9 0.5 0.01 15.6 0.4 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1361) JHBP PF06585.6 gi|325969736|ref|YP_004245928.1| - 0.044 12.5 4.6 1.2 7.8 0.2 2.8 3 0 0 3 3 3 0 Haemolymph juvenile hormone binding protein (JHBP) Rep_3 PF01051.16 gi|325969736|ref|YP_004245928.1| - 0.39 10.2 9.7 0.018 14.6 1.7 2.4 2 1 0 2 2 2 0 Initiator Replication protein DUF72 PF01904.13 gi|325969740|ref|YP_004245932.1| - 3.9e-56 190.3 0.1 4.4e-56 190.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Sugar_tr PF00083.19 gi|325969741|ref|YP_004245933.1| - 5.5e-18 64.7 13.1 5.5e-18 64.7 9.1 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|325969741|ref|YP_004245933.1| - 1.8e-14 53.2 54.3 1.8e-14 53.2 37.6 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily ETRAMP PF09716.5 gi|325969741|ref|YP_004245933.1| - 1.6 8.7 4.9 1 9.3 0.8 2.7 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) UbiA PF01040.13 gi|325969742|ref|YP_004245934.1| - 1.9e-34 119.0 33.3 4.1e-34 117.9 23.0 1.5 1 1 0 1 1 1 1 UbiA prenyltransferase family UbiD PF01977.11 gi|325969743|ref|YP_004245935.1| - 2.5e-110 368.7 0.0 3e-110 368.4 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NAD_binding_2 PF03446.10 gi|325969744|ref|YP_004245936.1| - 1.1e-24 87.1 0.1 1.6e-24 86.5 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|325969744|ref|YP_004245936.1| - 1.6e-10 41.1 0.0 2.5e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|325969744|ref|YP_004245936.1| - 4.4e-06 27.0 0.0 9.8e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|325969744|ref|YP_004245936.1| - 3.3e-05 23.1 0.1 5e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|325969744|ref|YP_004245936.1| - 0.001 18.7 0.5 0.0022 17.6 0.3 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|325969744|ref|YP_004245936.1| - 0.0022 17.9 0.6 0.013 15.4 0.0 2.4 2 1 1 3 3 3 1 TrkA-N domain IlvN PF07991.7 gi|325969744|ref|YP_004245936.1| - 0.0063 15.8 0.1 0.017 14.5 0.0 1.7 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain UDPG_MGDP_dh_N PF03721.9 gi|325969744|ref|YP_004245936.1| - 0.047 13.0 1.4 0.1 11.9 0.4 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LYTB PF02401.13 gi|325969744|ref|YP_004245936.1| - 0.067 12.0 0.0 0.087 11.7 0.0 1.1 1 0 0 1 1 1 0 LytB protein PDH PF02153.12 gi|325969744|ref|YP_004245936.1| - 0.08 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase RHH_1 PF01402.16 gi|325969746|ref|YP_004245938.1| - 1.2e-06 28.1 1.5 3.6e-06 26.6 0.1 2.5 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RBD PF02196.10 gi|325969746|ref|YP_004245938.1| - 0.045 13.4 0.0 0.17 11.6 0.0 1.8 2 0 0 2 2 2 0 Raf-like Ras-binding domain polyprenyl_synt PF00348.12 gi|325969747|ref|YP_004245939.1| - 1e-37 129.4 0.6 1.3e-37 129.0 0.4 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase FAD_binding_3 PF01494.14 gi|325969748|ref|YP_004245940.1| - 1.1e-14 54.2 1.0 1.3e-05 24.4 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|325969748|ref|YP_004245940.1| - 1.5e-06 27.4 0.1 0.00055 18.9 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|325969748|ref|YP_004245940.1| - 3.6e-05 23.6 0.4 0.00031 20.6 0.0 2.7 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|325969748|ref|YP_004245940.1| - 6.1e-05 22.2 1.0 0.052 12.6 0.1 2.6 2 0 0 2 2 2 2 Thi4 family Pyr_redox_2 PF07992.9 gi|325969748|ref|YP_004245940.1| - 0.00031 20.7 0.9 0.0006 19.7 0.2 2.0 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|325969748|ref|YP_004245940.1| - 0.0016 17.4 0.2 0.009 14.9 0.0 1.9 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|325969748|ref|YP_004245940.1| - 0.0016 17.1 0.0 0.054 12.1 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase ThiF PF00899.16 gi|325969748|ref|YP_004245940.1| - 0.0049 16.6 0.1 0.0093 15.7 0.0 1.4 1 0 0 1 1 1 1 ThiF family HI0933_like PF03486.9 gi|325969748|ref|YP_004245940.1| - 0.016 13.6 0.0 0.024 13.0 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_9 PF13454.1 gi|325969748|ref|YP_004245940.1| - 0.031 14.0 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|325969748|ref|YP_004245940.1| - 0.043 13.8 0.1 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_3 PF13738.1 gi|325969748|ref|YP_004245940.1| - 0.091 12.8 0.1 0.43 10.6 0.0 2.3 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Ribosomal_L38e PF01781.13 gi|325969749|ref|YP_004245941.1| - 0.001 18.7 0.4 0.0012 18.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family PX PF00787.19 gi|325969749|ref|YP_004245941.1| - 0.017 14.9 0.6 0.023 14.4 0.4 1.4 1 1 0 1 1 1 0 PX domain Pab87_oct PF13969.1 gi|325969749|ref|YP_004245941.1| - 0.092 12.8 0.0 0.097 12.7 0.0 1.1 1 0 0 1 1 1 0 Pab87 octamerisation domain LUC7 PF03194.10 gi|325969750|ref|YP_004245942.1| - 0.047 13.2 1.6 0.063 12.7 1.1 1.3 1 1 0 1 1 1 0 LUC7 N_terminus DUF1955 PF09205.5 gi|325969750|ref|YP_004245942.1| - 0.098 12.1 0.1 0.13 11.8 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1955) TPR_14 PF13428.1 gi|325969750|ref|YP_004245942.1| - 0.11 13.2 0.0 0.29 11.8 0.0 1.7 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.1 gi|325969750|ref|YP_004245942.1| - 0.11 13.2 0.0 0.19 12.4 0.0 1.6 1 1 0 1 1 1 0 Tetratricopeptide repeat SPO22 PF08631.5 gi|325969751|ref|YP_004245943.1| - 0.021 13.9 0.1 0.024 13.7 0.1 1.0 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like CRF PF00473.12 gi|325969751|ref|YP_004245943.1| - 0.049 13.7 1.2 0.049 13.7 0.8 2.0 2 0 0 2 2 2 0 Corticotropin-releasing factor family TPR_7 PF13176.1 gi|325969751|ref|YP_004245943.1| - 0.13 12.0 1.2 6.3 6.8 0.1 3.0 1 1 1 2 2 2 0 Tetratricopeptide repeat PPR PF01535.15 gi|325969751|ref|YP_004245943.1| - 0.2 11.7 1.1 11 6.1 0.0 2.6 2 0 0 2 2 2 0 PPR repeat Hydrolase_6 PF13344.1 gi|325969752|ref|YP_004245944.1| - 3e-20 71.9 0.0 5.7e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|325969752|ref|YP_004245944.1| - 2e-18 65.8 0.0 4.5e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|325969752|ref|YP_004245944.1| - 1.7e-09 38.4 0.0 6.1e-08 33.3 0.0 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|325969752|ref|YP_004245944.1| - 4.6e-09 36.7 0.0 0.00046 20.4 0.0 2.4 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|325969752|ref|YP_004245944.1| - 3.4e-05 23.2 0.0 8.1e-05 22.0 0.0 1.6 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase DRTGG PF07085.7 gi|325969752|ref|YP_004245944.1| - 0.0038 16.7 0.1 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 DRTGG domain RibD_C PF01872.12 gi|325969752|ref|YP_004245944.1| - 0.0085 15.7 0.0 0.019 14.5 0.0 1.6 2 0 0 2 2 2 1 RibD C-terminal domain Sugar_tr PF00083.19 gi|325969753|ref|YP_004245945.1| - 2.2e-46 158.3 27.2 2.9e-46 157.9 18.8 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|325969753|ref|YP_004245945.1| - 3.6e-38 131.1 79.9 5.4e-33 114.1 29.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|325969753|ref|YP_004245945.1| - 0.0016 16.8 5.1 0.0016 16.8 3.5 3.6 3 1 1 4 4 4 2 MFS/sugar transport protein Polyketide_cyc PF03364.15 gi|325969754|ref|YP_004245946.1| - 8e-06 25.8 0.0 9.4e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|325969754|ref|YP_004245946.1| - 1.4e-05 25.3 0.0 1.7e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|325969754|ref|YP_004245946.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein MFS_1 PF07690.11 gi|325969755|ref|YP_004245947.1| - 9.7e-27 93.5 33.9 9.7e-27 93.5 23.5 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325969755|ref|YP_004245947.1| - 0.0034 16.0 18.1 0.021 13.3 5.6 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter DUF1228 PF06779.9 gi|325969755|ref|YP_004245947.1| - 0.13 12.3 0.3 0.13 12.3 0.2 3.6 3 1 1 4 4 4 0 Protein of unknown function (DUF1228) 4HBT_2 PF13279.1 gi|325969756|ref|YP_004245948.1| - 9e-15 55.1 0.0 9.9e-15 55.0 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|325969756|ref|YP_004245948.1| - 1.2e-14 54.1 0.0 1.5e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|325969756|ref|YP_004245948.1| - 2.7e-05 23.2 0.1 3e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Acyl-ACP thioesterase DUF4367 PF14285.1 gi|325969756|ref|YP_004245948.1| - 0.07 12.4 0.7 0.11 11.7 0.5 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4367) Penicil_amidase PF01804.13 gi|325969757|ref|YP_004245949.1| - 4.8e-97 326.7 4.0 5.7e-97 326.5 2.8 1.0 1 0 0 1 1 1 1 Penicillin amidase AMP-binding PF00501.23 gi|325969758|ref|YP_004245950.1| - 1.9e-52 178.0 0.0 2.5e-52 177.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325969758|ref|YP_004245950.1| - 7.3e-14 52.4 0.0 1.6e-13 51.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HpaB_N PF11794.3 gi|325969759|ref|YP_004245951.1| - 1.4e-70 237.7 0.2 1.8e-70 237.3 0.1 1.1 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|325969759|ref|YP_004245951.1| - 2.9e-36 124.2 0.0 4.8e-36 123.5 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acetyltransf_3 PF13302.1 gi|325969759|ref|YP_004245951.1| - 0.12 12.5 0.0 0.34 11.0 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain AMP-binding PF00501.23 gi|325969760|ref|YP_004245952.1| - 7.6e-104 347.3 0.0 9.1e-104 347.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325969760|ref|YP_004245952.1| - 6.4e-16 59.0 0.3 1.7e-15 57.7 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain PTE PF02126.13 gi|325969761|ref|YP_004245953.1| - 5.2e-78 262.1 0.0 5.9e-78 261.9 0.0 1.0 1 0 0 1 1 1 1 Phosphotriesterase family Radical_SAM PF04055.16 gi|325969761|ref|YP_004245953.1| - 0.16 12.1 0.7 39 4.3 0.0 3.2 1 1 1 2 2 2 0 Radical SAM superfamily Imm32 PF15579.1 gi|325969762|ref|YP_004245954.1| - 0.016 14.7 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 32 NurA PF09376.5 gi|325969763|ref|YP_004245955.1| - 5.2e-06 26.1 1.0 3.8e-05 23.3 0.7 2.0 1 1 0 1 1 1 1 NurA domain adh_short PF00106.20 gi|325969765|ref|YP_004245957.1| - 4.5e-16 59.2 0.5 5.2e-16 59.0 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|325969765|ref|YP_004245957.1| - 3.5e-07 30.2 0.0 4e-07 30.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|325969765|ref|YP_004245957.1| - 3.1e-06 26.9 0.2 3.9e-06 26.6 0.2 1.1 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|325969765|ref|YP_004245957.1| - 0.00051 19.7 0.3 0.0006 19.5 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|325969765|ref|YP_004245957.1| - 0.0023 17.4 0.1 0.0026 17.2 0.1 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Methyltransf_25 PF13649.1 gi|325969765|ref|YP_004245957.1| - 0.025 14.9 0.0 0.028 14.7 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Eno-Rase_NADH_b PF12242.3 gi|325969765|ref|YP_004245957.1| - 0.027 14.2 0.7 0.047 13.4 0.5 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2-Hacid_dh_C PF02826.14 gi|325969765|ref|YP_004245957.1| - 0.078 12.1 0.2 0.099 11.7 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.1 gi|325969766|ref|YP_004245958.1| - 1.1e-20 74.4 0.2 1.2e-20 74.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|325969766|ref|YP_004245958.1| - 5.7e-07 29.5 0.0 8.9e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase PD-C2-AF1 PF09310.5 gi|325969766|ref|YP_004245958.1| - 0.13 11.3 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 POU domain, class 2, associating factor 1 MFS_1 PF07690.11 gi|325969767|ref|YP_004245959.1| - 2.1e-15 56.3 49.1 3e-10 39.3 6.9 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF423 PF04241.10 gi|325969767|ref|YP_004245959.1| - 0.69 9.8 8.1 0.16 11.8 2.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF423) NUDIX PF00293.23 gi|325969769|ref|YP_004245961.1| - 4.7e-18 65.1 0.1 5.8e-18 64.8 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Sugar_tr PF00083.19 gi|325969770|ref|YP_004245962.1| - 2.9e-33 115.1 32.1 1e-23 83.6 6.6 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|325969770|ref|YP_004245962.1| - 2.5e-22 79.0 70.9 9e-21 73.9 30.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF4231 PF14015.1 gi|325969770|ref|YP_004245962.1| - 0.029 14.3 0.5 0.029 14.3 0.4 3.6 4 0 0 4 4 4 0 Protein of unknown function (DUF4231) PepSY_TM PF03929.11 gi|325969770|ref|YP_004245962.1| - 1.4 9.4 0.1 1.4 9.4 0.0 7.7 8 0 0 8 8 8 0 PepSY-associated TM helix RTC PF01137.16 gi|325969771|ref|YP_004245963.1| - 5.4e-88 293.6 0.3 6.4e-88 293.3 0.2 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|325969771|ref|YP_004245963.1| - 2.8e-32 110.7 0.1 4.9e-32 110.0 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain AhpC-TSA PF00578.16 gi|325969773|ref|YP_004245965.1| - 2.7e-41 140.1 0.0 3.1e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|325969773|ref|YP_004245965.1| - 2.2e-27 95.4 0.0 2.6e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin GSHPx PF00255.14 gi|325969773|ref|YP_004245965.1| - 0.00064 19.0 0.0 0.0012 18.2 0.0 1.4 1 1 0 1 1 1 1 Glutathione peroxidase AhpC-TSA_2 PF13911.1 gi|325969773|ref|YP_004245965.1| - 0.00076 19.3 0.0 0.00091 19.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.9 gi|325969773|ref|YP_004245965.1| - 0.0076 15.8 0.0 0.025 14.2 0.0 1.8 1 1 0 1 1 1 1 SCO1/SenC DUF899 PF05988.7 gi|325969773|ref|YP_004245965.1| - 0.019 14.3 0.0 0.02 14.3 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Lipocalin_2 PF08212.7 gi|325969773|ref|YP_004245965.1| - 0.05 13.3 0.0 0.063 13.0 0.0 1.5 1 1 0 1 1 1 0 Lipocalin-like domain DUF3801 PF12687.2 gi|325969773|ref|YP_004245965.1| - 0.093 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) Peptidase_A4 PF01828.12 gi|325969774|ref|YP_004245966.1| - 6.6e-27 93.9 4.1 7.5e-27 93.7 2.8 1.1 1 0 0 1 1 1 1 Peptidase A4 family RelA_SpoT PF04607.12 gi|325969777|ref|YP_004245969.1| - 0.028 14.4 0.4 0.033 14.2 0.3 1.2 1 0 0 1 1 1 0 Region found in RelA / SpoT proteins YflT PF11181.3 gi|325969777|ref|YP_004245969.1| - 0.045 13.8 0.1 0.051 13.7 0.1 1.2 1 0 0 1 1 1 0 Heat induced stress protein YflT DUF2025 PF09634.5 gi|325969777|ref|YP_004245969.1| - 0.049 13.3 0.1 0.056 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2025) DAO PF01266.19 gi|325969779|ref|YP_004245971.1| - 2e-10 40.1 0.0 2.3e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase AA_permease_2 PF13520.1 gi|325969780|ref|YP_004245972.1| - 2e-34 118.8 61.7 2e-34 118.8 42.7 1.9 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|325969780|ref|YP_004245972.1| - 3.5e-29 101.4 38.8 3.5e-29 101.4 26.9 2.1 2 0 0 2 2 2 1 Amino acid permease DUF1405 PF07187.6 gi|325969783|ref|YP_004245975.1| - 0.0047 16.6 2.5 0.0058 16.3 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) Claudin_3 PF06653.6 gi|325969783|ref|YP_004245975.1| - 0.76 9.4 8.2 1.4 8.6 5.7 1.5 1 1 0 1 1 1 0 Tight junction protein, Claudin-like ABC_tran PF00005.22 gi|325969784|ref|YP_004245976.1| - 1.3e-30 106.4 0.0 1.8e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|325969784|ref|YP_004245976.1| - 1.2e-17 64.8 1.2 7.5e-11 42.5 0.1 2.0 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|325969784|ref|YP_004245976.1| - 0.00012 22.1 1.8 0.0003 20.8 0.8 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|325969784|ref|YP_004245976.1| - 0.0008 19.5 0.0 0.0016 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|325969784|ref|YP_004245976.1| - 0.00086 18.8 0.0 0.0017 17.8 0.0 1.5 2 0 0 2 2 1 1 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|325969784|ref|YP_004245976.1| - 0.0011 18.1 0.0 0.041 12.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|325969784|ref|YP_004245976.1| - 0.0022 17.8 0.0 0.33 10.8 0.0 2.2 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.14 gi|325969784|ref|YP_004245976.1| - 0.0059 15.8 0.1 0.3 10.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|325969784|ref|YP_004245976.1| - 0.006 16.4 0.0 0.028 14.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325969784|ref|YP_004245976.1| - 0.007 15.8 0.1 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|325969784|ref|YP_004245976.1| - 0.016 14.6 0.3 1.3 8.4 0.0 2.8 2 1 0 3 3 3 0 AAA-like domain AAA_30 PF13604.1 gi|325969784|ref|YP_004245976.1| - 0.017 14.7 0.2 0.1 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|325969784|ref|YP_004245976.1| - 0.022 14.9 0.2 0.087 13.0 0.0 2.3 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|325969784|ref|YP_004245976.1| - 0.023 14.4 0.2 0.08 12.7 0.0 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_23 PF13476.1 gi|325969784|ref|YP_004245976.1| - 0.028 14.7 0.0 0.034 14.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|325969784|ref|YP_004245976.1| - 0.032 12.6 0.0 0.048 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|325969784|ref|YP_004245976.1| - 0.033 15.0 0.0 0.21 12.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|325969784|ref|YP_004245976.1| - 0.042 14.1 0.1 0.28 11.5 0.1 2.2 1 1 0 1 1 1 0 AAA domain Orthopox_A43R PF06517.6 gi|325969784|ref|YP_004245976.1| - 0.048 13.2 0.0 0.07 12.6 0.0 1.3 1 1 0 1 1 1 0 Orthopoxvirus A43R protein NACHT PF05729.7 gi|325969784|ref|YP_004245976.1| - 0.063 12.9 0.1 0.088 12.4 0.1 1.6 1 1 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|325969784|ref|YP_004245976.1| - 0.12 12.3 0.0 0.31 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|325969784|ref|YP_004245976.1| - 0.12 12.2 0.0 0.26 11.2 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.3 gi|325969784|ref|YP_004245976.1| - 0.12 9.6 0.1 0.16 9.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rieske PF00355.21 gi|325969786|ref|YP_004245978.1| - 4.5e-16 58.1 0.0 7.5e-16 57.4 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.14 gi|325969786|ref|YP_004245978.1| - 0.00026 20.7 0.0 0.00037 20.1 0.0 1.2 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) gag-asp_proteas PF13975.1 gi|325969787|ref|YP_004245979.1| - 1.1e-05 25.1 0.0 2.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.1 gi|325969787|ref|YP_004245979.1| - 3.8e-05 24.0 0.0 4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease RRXRR PF14239.1 gi|325969788|ref|YP_004245980.1| - 0.034 13.5 0.2 0.044 13.1 0.1 1.1 1 0 0 1 1 1 0 RRXRR protein Beta-Casp PF10996.3 gi|325969789|ref|YP_004245981.1| - 2.8e-31 108.0 0.0 9.1e-30 103.1 0.0 2.8 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|325969789|ref|YP_004245981.1| - 2.9e-20 72.7 1.1 1.2e-19 70.7 0.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|325969789|ref|YP_004245981.1| - 6.3e-13 48.3 0.1 5.4e-11 42.1 0.0 2.9 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|325969789|ref|YP_004245981.1| - 1.2e-11 44.5 0.1 3e-11 43.2 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Pox_H7 PF04787.7 gi|325969789|ref|YP_004245981.1| - 0.0075 16.0 0.2 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 Late protein H7 Lactamase_B_3 PF13483.1 gi|325969789|ref|YP_004245981.1| - 0.015 15.0 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain EB_dh PF09459.5 gi|325969789|ref|YP_004245981.1| - 0.21 10.9 0.0 0.33 10.3 0.0 1.2 1 0 0 1 1 1 0 Ethylbenzene dehydrogenase YolD PF08863.5 gi|325969789|ref|YP_004245981.1| - 0.51 10.2 5.0 12 5.7 0.0 4.0 5 1 1 6 6 6 0 YolD-like protein Glyco_hydro_15 PF00723.16 gi|325969790|ref|YP_004245982.1| - 2.7e-11 42.6 0.4 4e-08 32.2 0.1 3.0 1 1 1 3 3 3 2 Glycosyl hydrolases family 15 DUF2154 PF09922.4 gi|325969790|ref|YP_004245982.1| - 0.032 13.9 0.1 0.062 12.9 0.1 1.4 1 0 0 1 1 1 0 Cell wall-active antibiotics response protein (DUF2154) IncA PF04156.9 gi|325969790|ref|YP_004245982.1| - 0.26 10.8 3.1 3.3 7.2 0.2 2.2 2 0 0 2 2 2 0 IncA protein CcmH PF03918.9 gi|325969790|ref|YP_004245982.1| - 0.48 9.4 2.6 2.2 7.2 0.4 2.3 2 0 0 2 2 2 0 Cytochrome C biogenesis protein DUF3995 PF13160.1 gi|325969790|ref|YP_004245982.1| - 1.7 8.7 6.6 0.14 12.2 0.4 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3995) EamA PF00892.15 gi|325969791|ref|YP_004245983.1| - 3e-08 33.7 46.0 1.8e-07 31.2 9.0 3.7 1 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|325969791|ref|YP_004245983.1| - 9.8e-06 25.7 9.1 9.8e-06 25.7 6.3 4.1 2 1 2 4 4 4 1 Multidrug resistance efflux transporter Sugar_transport PF06800.7 gi|325969791|ref|YP_004245983.1| - 0.07 12.1 23.1 0.097 11.7 12.1 2.9 1 1 0 2 2 2 0 Sugar transport protein Grp1_Fun34_YaaH PF01184.14 gi|325969792|ref|YP_004245984.1| - 0.013 14.8 20.8 0.06 12.6 14.4 1.8 1 1 0 1 1 1 0 GPR1/FUN34/yaaH family AMP-binding PF00501.23 gi|325969793|ref|YP_004245985.1| - 1.3e-80 270.8 0.0 1.6e-80 270.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|325969793|ref|YP_004245985.1| - 1.4e-15 57.9 0.0 2.4e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain KaiC PF06745.8 gi|325969794|ref|YP_004245986.1| - 6.7e-30 103.8 0.2 7.7e-29 100.4 0.2 2.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|325969794|ref|YP_004245986.1| - 2.9e-11 43.1 0.2 3.1e-09 36.5 0.1 3.1 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|325969794|ref|YP_004245986.1| - 6.5e-05 22.4 0.1 0.025 14.0 0.0 2.4 2 1 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|325969794|ref|YP_004245986.1| - 0.00018 21.5 0.0 0.00063 19.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain GvpD PF07088.6 gi|325969794|ref|YP_004245986.1| - 0.00035 19.0 0.0 0.00066 18.1 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|325969794|ref|YP_004245986.1| - 0.0062 15.6 0.0 0.58 9.1 0.0 2.3 2 0 0 2 2 2 1 recA bacterial DNA recombination protein DUF2075 PF09848.4 gi|325969794|ref|YP_004245986.1| - 0.013 14.5 0.0 0.019 13.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.1 gi|325969794|ref|YP_004245986.1| - 0.014 16.1 0.0 0.049 14.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|325969794|ref|YP_004245986.1| - 0.035 13.9 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|325969794|ref|YP_004245986.1| - 0.036 13.5 0.2 0.15 11.5 0.1 2.0 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|325969794|ref|YP_004245986.1| - 0.036 14.2 0.0 1.5 9.0 0.0 2.9 2 1 1 3 3 3 0 RNA helicase Elong_Iki1 PF10483.4 gi|325969794|ref|YP_004245986.1| - 0.05 12.9 0.0 0.097 12.0 0.0 1.6 1 1 0 1 1 1 0 Elongator subunit Iki1 AAA_22 PF13401.1 gi|325969794|ref|YP_004245986.1| - 0.055 13.6 0.1 0.2 11.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|325969794|ref|YP_004245986.1| - 0.076 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|325969794|ref|YP_004245986.1| - 0.11 12.4 0.1 0.21 11.5 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|325969794|ref|YP_004245986.1| - 0.12 11.8 0.1 3.8 6.8 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain rRNA_processing PF08524.6 gi|325969794|ref|YP_004245986.1| - 0.13 12.0 1.5 0.18 11.6 0.3 1.6 2 0 0 2 2 2 0 rRNA processing AAA_29 PF13555.1 gi|325969794|ref|YP_004245986.1| - 0.13 11.7 0.0 0.35 10.4 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF35 PF01796.12 gi|325969796|ref|YP_004245988.1| - 3.1e-11 43.3 0.1 4.6e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|325969796|ref|YP_004245988.1| - 4.6e-09 35.9 4.2 6.6e-09 35.4 2.9 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_C PF02803.13 gi|325969797|ref|YP_004245989.1| - 2.9e-05 23.4 0.1 0.00021 20.7 0.0 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|325969797|ref|YP_004245989.1| - 0.0027 16.7 0.0 0.0053 15.7 0.0 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.5 gi|325969797|ref|YP_004245989.1| - 0.017 14.7 0.6 0.065 12.8 0.1 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG-CoA_red PF00368.13 gi|325969798|ref|YP_004245990.1| - 6.9e-145 482.3 1.7 7.8e-145 482.2 1.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Fic PF02661.13 gi|325969798|ref|YP_004245990.1| - 0.11 13.2 0.0 0.27 11.9 0.0 1.7 1 0 0 1 1 1 0 Fic/DOC family Isochorismatase PF00857.15 gi|325969799|ref|YP_004245991.1| - 8.7e-42 143.0 0.0 9.8e-42 142.8 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DEAD PF00270.24 gi|325969801|ref|YP_004245993.1| - 2.2e-26 92.3 0.0 5.2e-26 91.1 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|325969801|ref|YP_004245993.1| - 3.8e-17 61.9 0.0 6.7e-15 54.7 0.0 2.9 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|325969801|ref|YP_004245993.1| - 7.5e-13 48.8 0.1 5e-12 46.2 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.10 gi|325969801|ref|YP_004245993.1| - 0.00037 20.3 0.0 0.00061 19.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|325969801|ref|YP_004245993.1| - 0.014 14.1 0.0 0.021 13.6 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain HemN_C PF06969.11 gi|325969801|ref|YP_004245993.1| - 0.02 14.9 0.0 0.13 12.3 0.0 2.3 2 0 0 2 2 2 0 HemN C-terminal domain Flavi_DEAD PF07652.9 gi|325969801|ref|YP_004245993.1| - 0.027 14.2 0.3 0.67 9.7 0.0 2.9 4 0 0 4 4 4 0 Flavivirus DEAD domain Helicase_C_2 PF13307.1 gi|325969801|ref|YP_004245993.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Helicase C-terminal domain HypA PF01155.14 gi|325969802|ref|YP_004245994.1| - 0.029 14.0 0.1 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family PGM_PMM_I PF02878.11 gi|325969803|ref|YP_004245995.1| - 1.1e-33 115.6 0.0 2.1e-33 114.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|325969803|ref|YP_004245995.1| - 6e-24 84.3 0.1 1.2e-23 83.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|325969803|ref|YP_004245995.1| - 2.3e-17 63.0 0.0 8.9e-17 61.1 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|325969803|ref|YP_004245995.1| - 1e-12 47.8 0.0 2.4e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PNP_UDP_1 PF01048.15 gi|325969804|ref|YP_004245996.1| - 1.4e-38 132.1 1.0 1.7e-38 131.8 0.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Transp_cyt_pur PF02133.10 gi|325969805|ref|YP_004245997.1| - 4.7e-08 32.0 38.0 8.4e-08 31.1 26.3 1.4 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin MFS_1 PF07690.11 gi|325969806|ref|YP_004245998.1| - 2.2e-39 135.2 67.7 2.2e-39 135.2 46.9 4.0 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|325969806|ref|YP_004245998.1| - 9.1e-11 40.9 12.5 9.1e-11 40.9 8.7 3.8 2 1 2 4 4 4 2 Sugar (and other) transporter PCMT PF01135.14 gi|325969807|ref|YP_004245999.1| - 4.9e-66 222.2 0.0 5.7e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|325969807|ref|YP_004245999.1| - 4.2e-07 30.5 0.0 6.4e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|325969807|ref|YP_004245999.1| - 2.7e-06 27.0 0.0 5.1e-06 26.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain GCD14 PF08704.5 gi|325969807|ref|YP_004245999.1| - 4e-06 26.5 0.0 5.4e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_3 PF01596.12 gi|325969807|ref|YP_004245999.1| - 2.7e-05 23.3 0.0 4.8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_26 PF13659.1 gi|325969807|ref|YP_004245999.1| - 5e-05 23.2 0.0 7.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|325969807|ref|YP_004245999.1| - 0.00015 22.5 0.0 0.00024 21.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|325969807|ref|YP_004245999.1| - 0.0055 15.8 0.0 0.0066 15.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|325969807|ref|YP_004245999.1| - 0.017 14.6 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Fibrillarin PF01269.12 gi|325969807|ref|YP_004245999.1| - 0.024 13.5 0.0 0.052 12.4 0.0 1.6 2 0 0 2 2 2 0 Fibrillarin MTS PF05175.9 gi|325969807|ref|YP_004245999.1| - 0.042 13.2 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|325969807|ref|YP_004245999.1| - 0.049 13.3 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain ACP_syn_III_C PF08541.5 gi|325969807|ref|YP_004245999.1| - 0.14 12.2 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF779 PF05610.6 gi|325969808|ref|YP_004246000.1| - 7.5e-15 54.7 0.0 9.6e-15 54.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF779) Aldedh PF00171.17 gi|325969810|ref|YP_004246002.1| - 7.6e-164 545.4 0.1 9.1e-164 545.1 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.6 gi|325969810|ref|YP_004246002.1| - 0.094 11.9 0.0 2.7 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) Peripla_BP_2 PF01497.13 gi|325969813|ref|YP_004246005.1| - 1.3e-11 44.1 0.0 2.1e-11 43.4 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein MFS_1 PF07690.11 gi|325969814|ref|YP_004246006.1| - 6.4e-21 74.4 45.6 6.4e-21 74.4 31.6 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily DUF2250 PF10007.4 gi|325969815|ref|YP_004246007.1| - 0.00021 21.1 0.0 0.00079 19.2 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.1 gi|325969815|ref|YP_004246007.1| - 0.12 11.9 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MarR_2 PF12802.2 gi|325969815|ref|YP_004246007.1| - 0.14 11.8 0.2 8.4 6.1 0.0 2.2 2 0 0 2 2 2 0 MarR family MR_MLE_C PF13378.1 gi|325969816|ref|YP_004246008.1| - 2.5e-25 88.5 0.0 4.7e-25 87.7 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|325969816|ref|YP_004246008.1| - 3e-16 59.4 0.0 5.3e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|325969816|ref|YP_004246008.1| - 2.8e-14 53.4 0.2 1.3e-13 51.2 0.0 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AP_endonuc_2 PF01261.19 gi|325969816|ref|YP_004246008.1| - 0.0057 15.9 0.0 0.041 13.1 0.0 2.1 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.11 gi|325969817|ref|YP_004246009.1| - 6.4e-44 150.1 58.1 8e-35 120.1 14.1 2.6 3 0 0 3 3 3 2 Major Facilitator Superfamily DUF3601 PF12208.3 gi|325969818|ref|YP_004246010.1| - 0.0055 16.6 0.0 0.007 16.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3601) SUR7 PF06687.7 gi|325969818|ref|YP_004246010.1| - 0.0063 16.0 7.4 0.0069 15.9 5.1 1.0 1 0 0 1 1 1 1 SUR7/PalI family NicO PF03824.11 gi|325969818|ref|YP_004246010.1| - 0.04 13.2 2.7 0.044 13.0 1.9 1.0 1 0 0 1 1 1 0 High-affinity nickel-transport protein DUF373 PF04123.8 gi|325969818|ref|YP_004246010.1| - 0.11 11.5 3.0 0.12 11.4 2.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF326 PF03860.11 gi|325969818|ref|YP_004246010.1| - 0.34 10.7 4.3 0.5 10.2 3.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF326) PrgI PF12666.2 gi|325969818|ref|YP_004246010.1| - 1.7 8.8 5.0 2 8.6 3.4 1.1 1 0 0 1 1 1 0 PrgI family protein NB-ARC PF00931.17 gi|325969819|ref|YP_004246011.1| - 0.0012 17.7 0.0 0.0027 16.6 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain ABC_tran PF00005.22 gi|325969819|ref|YP_004246011.1| - 0.0021 18.3 0.0 0.0043 17.3 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_24 PF13479.1 gi|325969819|ref|YP_004246011.1| - 0.0021 17.6 0.1 0.0068 16.0 0.0 1.9 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|325969819|ref|YP_004246011.1| - 0.0067 16.0 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|325969819|ref|YP_004246011.1| - 0.014 14.7 0.0 0.03 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|325969819|ref|YP_004246011.1| - 0.017 15.0 0.0 0.029 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|325969819|ref|YP_004246011.1| - 0.018 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Pox_A32 PF04665.7 gi|325969819|ref|YP_004246011.1| - 0.025 13.8 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_22 PF13401.1 gi|325969819|ref|YP_004246011.1| - 0.035 14.2 0.5 0.12 12.4 0.3 2.2 2 1 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|325969819|ref|YP_004246011.1| - 0.035 13.3 0.0 0.088 12.0 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.7 gi|325969819|ref|YP_004246011.1| - 0.05 13.2 1.1 0.13 11.9 0.8 2.1 1 1 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|325969819|ref|YP_004246011.1| - 0.061 13.0 1.1 0.15 11.7 0.2 2.0 2 1 0 2 2 2 0 Part of AAA domain AAA_15 PF13175.1 gi|325969819|ref|YP_004246011.1| - 0.063 12.3 0.0 0.15 11.0 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_21 PF13304.1 gi|325969819|ref|YP_004246011.1| - 0.099 12.5 0.1 0.15 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|325969819|ref|YP_004246011.1| - 0.17 11.3 1.1 1.2 8.6 0.0 2.6 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Abhydrolase_6 PF12697.2 gi|325969821|ref|YP_004246013.1| - 1.4e-22 80.7 0.0 1e-10 41.8 0.0 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|325969821|ref|YP_004246013.1| - 3.5e-14 52.7 0.0 4.3e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|325969821|ref|YP_004246013.1| - 2.5e-13 50.1 0.0 5.1e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.13 gi|325969821|ref|YP_004246013.1| - 0.0087 15.3 0.0 0.012 14.9 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family UPF0227 PF05728.7 gi|325969821|ref|YP_004246013.1| - 0.023 14.3 0.0 0.033 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) RNA_POL_M_15KD PF02150.11 gi|325969822|ref|YP_004246014.1| - 0.0081 15.8 0.1 0.0081 15.8 0.1 1.9 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit rRNA_methylase PF06962.7 gi|325969822|ref|YP_004246014.1| - 0.049 13.3 0.1 0.06 13.0 0.1 1.2 1 0 0 1 1 1 0 Putative rRNA methylase DUF2387 PF09526.5 gi|325969822|ref|YP_004246014.1| - 0.069 13.0 1.6 0.12 12.3 1.1 1.7 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_methylase PF00145.12 gi|325969823|ref|YP_004246015.1| - 1.6e-49 168.8 0.0 4e-34 118.2 0.0 2.1 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|325969823|ref|YP_004246015.1| - 0.00031 20.7 0.0 0.00052 20.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|325969823|ref|YP_004246015.1| - 0.0037 16.8 0.1 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase FBPase_3 PF01950.11 gi|325969824|ref|YP_004246016.1| - 3.9e-178 592.0 0.0 4.5e-178 591.8 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Peptidase_M19 PF01244.16 gi|325969825|ref|YP_004246017.1| - 2.3e-79 266.6 0.0 2.6e-79 266.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.9 gi|325969825|ref|YP_004246017.1| - 0.045 13.3 0.0 0.089 12.3 0.0 1.5 1 1 0 1 1 1 0 Amidohydrolase tRNA-synt_1b PF00579.20 gi|325969826|ref|YP_004246018.1| - 2.8e-26 92.3 0.0 2.1e-25 89.4 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) PUA PF01472.15 gi|325969827|ref|YP_004246019.1| - 6.8e-17 60.9 1.1 9.6e-17 60.4 0.8 1.2 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.1 gi|325969827|ref|YP_004246019.1| - 5.5e-12 45.3 0.1 1.4e-11 44.0 0.0 1.7 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TruB-C_2 PF09157.6 gi|325969827|ref|YP_004246019.1| - 0.00025 20.8 0.7 0.00053 19.7 0.2 1.9 2 1 0 2 2 2 1 Pseudouridine synthase II TruB, C-terminal UDG PF03167.14 gi|325969828|ref|YP_004246020.1| - 2.4e-30 105.0 0.0 3.1e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Acyl-CoA_dh_1 PF00441.19 gi|325969829|ref|YP_004246021.1| - 3.6e-39 134.2 2.2 5.4e-39 133.6 1.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|325969829|ref|YP_004246021.1| - 9.3e-21 74.5 0.0 1.7e-20 73.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|325969829|ref|YP_004246021.1| - 1.3e-20 72.5 0.1 2.3e-20 71.8 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|325969829|ref|YP_004246021.1| - 1.4e-15 57.7 0.2 2.2e-15 57.0 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain IDEAL PF08858.5 gi|325969829|ref|YP_004246021.1| - 0.027 13.9 0.3 0.084 12.3 0.2 1.9 1 0 0 1 1 1 0 IDEAL domain Acyl-CoA_dh_1 PF00441.19 gi|325969830|ref|YP_004246022.1| - 1.5e-47 161.4 0.1 2.2e-47 160.9 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|325969830|ref|YP_004246022.1| - 2.1e-26 92.7 0.0 4.6e-26 91.6 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|325969830|ref|YP_004246022.1| - 9.8e-22 76.2 0.1 1.7e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|325969830|ref|YP_004246022.1| - 5.7e-16 58.9 0.0 8.8e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF58 PF01882.13 gi|325969832|ref|YP_004246024.1| - 9.9e-05 22.4 0.0 0.00025 21.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF2007 PF09413.5 gi|325969832|ref|YP_004246024.1| - 0.028 14.2 0.0 0.089 12.6 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2007) AAA_3 PF07726.6 gi|325969833|ref|YP_004246025.1| - 3.2e-64 214.4 0.0 4.6e-64 213.9 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|325969833|ref|YP_004246025.1| - 2.2e-14 53.3 0.0 3.7e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|325969833|ref|YP_004246025.1| - 1.4e-06 27.3 0.0 3.7e-05 22.6 0.0 2.7 2 1 0 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|325969833|ref|YP_004246025.1| - 4.6e-05 23.6 0.0 0.00017 21.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|325969833|ref|YP_004246025.1| - 0.00044 19.3 0.0 0.0025 16.8 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|325969833|ref|YP_004246025.1| - 0.00092 18.7 0.0 0.002 17.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|325969833|ref|YP_004246025.1| - 0.0019 17.4 0.2 1.5 7.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|325969833|ref|YP_004246025.1| - 0.03 14.3 0.1 0.11 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AD PF09793.4 gi|325969833|ref|YP_004246025.1| - 0.093 12.5 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Anticodon-binding domain Transglut_core PF01841.14 gi|325969834|ref|YP_004246026.1| - 7.8e-09 35.7 0.0 1.2e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|325969835|ref|YP_004246027.1| - 0.037 13.9 0.0 0.059 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) RNase_HII PF01351.13 gi|325969836|ref|YP_004246028.1| - 3.7e-37 127.8 0.0 4.2e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Herpes_LMP2 PF07415.6 gi|325969837|ref|YP_004246029.1| - 0.0031 16.1 2.0 0.0033 16.0 1.4 1.0 1 0 0 1 1 1 1 Gammaherpesvirus latent membrane protein (LMP2) protein DUF973 PF06157.6 gi|325969837|ref|YP_004246029.1| - 0.011 14.6 9.8 0.012 14.5 6.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) IncA PF04156.9 gi|325969837|ref|YP_004246029.1| - 0.014 14.9 0.3 0.017 14.7 0.2 1.1 1 0 0 1 1 1 0 IncA protein BacA PF02673.13 gi|325969837|ref|YP_004246029.1| - 0.016 14.4 1.0 0.016 14.4 0.7 1.0 1 0 0 1 1 1 0 Bacitracin resistance protein BacA PMP22_Claudin PF00822.15 gi|325969837|ref|YP_004246029.1| - 0.14 11.8 2.5 0.15 11.7 1.8 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family NfeD PF01957.13 gi|325969837|ref|YP_004246029.1| - 0.15 12.1 3.9 0.17 11.9 2.7 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding PGPGW PF09656.5 gi|325969837|ref|YP_004246029.1| - 0.28 10.5 9.4 3.5 7.0 2.7 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) Papilloma_E5A PF05776.7 gi|325969837|ref|YP_004246029.1| - 1.9 8.6 7.5 2.2 8.5 5.2 1.1 1 0 0 1 1 1 0 Papillomavirus E5A protein DUF3098 PF11297.3 gi|325969837|ref|YP_004246029.1| - 3.6 7.3 10.3 2.2e+02 1.6 7.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) DUF3040 PF11239.3 gi|325969837|ref|YP_004246029.1| - 9 6.4 8.1 13 5.8 5.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) CbiA PF01656.18 gi|325969838|ref|YP_004246030.1| - 3.1e-14 52.8 0.1 4.5e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|325969838|ref|YP_004246030.1| - 1.6e-09 37.9 0.0 2.3e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|325969838|ref|YP_004246030.1| - 0.0072 15.4 0.3 0.016 14.3 0.1 1.7 2 0 0 2 2 2 1 ATPase MipZ ParA PF10609.4 gi|325969838|ref|YP_004246030.1| - 0.037 13.8 0.5 0.067 13.0 0.3 1.4 1 0 0 1 1 1 0 ParA/MinD ATPase like ArsA_ATPase PF02374.10 gi|325969838|ref|YP_004246030.1| - 0.091 11.7 2.2 0.11 11.4 0.4 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase Chorismate_bind PF00425.13 gi|325969838|ref|YP_004246030.1| - 0.18 11.0 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 chorismate binding enzyme T2SF PF00482.18 gi|325969839|ref|YP_004246031.1| - 1.7e-12 47.3 1.8 1.6e-08 34.4 0.0 3.6 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF677 PF05055.7 gi|325969839|ref|YP_004246031.1| - 0.032 12.9 2.1 0.035 12.7 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF677) LysE PF01810.13 gi|325969840|ref|YP_004246032.1| - 3e-25 88.6 17.2 3.5e-25 88.4 12.0 1.1 1 0 0 1 1 1 1 LysE type translocator Paf67 PF10255.4 gi|325969840|ref|YP_004246032.1| - 1.6 7.4 4.1 2.2 7.0 2.8 1.1 1 0 0 1 1 1 0 RNA polymerase I-associated factor PAF67 Fer4_8 PF13183.1 gi|325969841|ref|YP_004246033.1| - 9.5e-10 38.3 4.8 1.5e-09 37.7 3.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325969841|ref|YP_004246033.1| - 6.9e-09 35.9 5.4 1.1e-08 35.2 3.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|325969841|ref|YP_004246033.1| - 3.1e-07 30.5 5.4 6.8e-07 29.4 3.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325969841|ref|YP_004246033.1| - 8.9e-06 25.3 9.6 0.001 18.8 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|325969841|ref|YP_004246033.1| - 5.7e-05 22.8 9.5 0.00029 20.5 6.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|325969841|ref|YP_004246033.1| - 7e-05 23.1 9.6 0.00082 19.7 7.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|325969841|ref|YP_004246033.1| - 0.00032 21.0 4.1 0.3 11.5 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|325969841|ref|YP_004246033.1| - 0.00034 21.3 6.0 0.083 13.6 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|325969841|ref|YP_004246033.1| - 0.00046 19.6 12.5 0.022 14.3 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325969841|ref|YP_004246033.1| - 0.011 15.5 4.0 0.61 9.9 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|325969841|ref|YP_004246033.1| - 0.049 13.9 11.1 0.51 10.8 1.7 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|325969841|ref|YP_004246033.1| - 0.22 11.5 12.2 0.17 11.8 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|325969841|ref|YP_004246033.1| - 0.5 10.0 3.7 6.4 6.4 0.1 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|325969841|ref|YP_004246033.1| - 0.95 10.0 5.5 3.6 8.2 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|325969841|ref|YP_004246033.1| - 9.2 7.1 16.8 0.75 10.5 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_9 PF08221.6 gi|325969842|ref|YP_004246034.1| - 4.1e-07 29.7 0.0 6.8e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.15 gi|325969842|ref|YP_004246034.1| - 3e-06 26.8 0.0 6.9e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|325969842|ref|YP_004246034.1| - 2e-05 23.8 0.0 7.4e-05 22.0 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|325969842|ref|YP_004246034.1| - 3.5e-05 24.0 0.0 7.2e-05 23.0 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|325969842|ref|YP_004246034.1| - 5e-05 22.9 0.0 0.00018 21.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|325969842|ref|YP_004246034.1| - 0.0012 18.3 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|325969842|ref|YP_004246034.1| - 0.0075 15.9 0.0 0.017 14.8 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|325969842|ref|YP_004246034.1| - 0.014 15.0 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF2582 PF10771.4 gi|325969842|ref|YP_004246034.1| - 0.016 15.0 0.0 0.3 10.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2582) Cullin PF00888.17 gi|325969842|ref|YP_004246034.1| - 0.017 13.6 0.0 0.02 13.4 0.0 1.1 1 0 0 1 1 1 0 Cullin family Rrf2 PF02082.15 gi|325969842|ref|YP_004246034.1| - 0.032 14.3 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.12 gi|325969842|ref|YP_004246034.1| - 0.039 13.4 0.0 0.083 12.3 0.0 1.5 1 1 1 2 2 2 0 TFIIE alpha subunit HTH_Mga PF08280.6 gi|325969842|ref|YP_004246034.1| - 0.041 13.6 0.0 3.3 7.5 0.0 2.2 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain DUF977 PF06163.6 gi|325969842|ref|YP_004246034.1| - 0.049 13.3 0.0 0.059 13.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Sulfolobus_pRN PF05584.6 gi|325969842|ref|YP_004246034.1| - 0.077 12.9 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2250 PF10007.4 gi|325969842|ref|YP_004246034.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.2 gi|325969842|ref|YP_004246034.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain Fer4_6 PF12837.2 gi|325969843|ref|YP_004246035.1| - 1.3e-13 50.1 14.0 1.2e-05 24.9 1.5 3.6 3 0 0 3 3 3 3 4Fe-4S binding domain Pyr_redox_2 PF07992.9 gi|325969843|ref|YP_004246035.1| - 1.4e-13 51.2 0.0 1e-08 35.2 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|325969843|ref|YP_004246035.1| - 4.7e-13 48.1 18.2 3.3e-06 26.4 2.7 3.9 4 0 0 4 4 3 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|325969843|ref|YP_004246035.1| - 3e-12 46.7 14.6 1.3e-10 41.5 4.8 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|325969843|ref|YP_004246035.1| - 4e-10 39.3 0.0 6.3e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_10 PF13237.1 gi|325969843|ref|YP_004246035.1| - 2e-09 37.1 9.9 4.5e-08 32.7 3.2 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|325969843|ref|YP_004246035.1| - 4e-09 35.8 15.3 0.0023 17.7 2.1 3.7 3 0 0 3 3 3 3 4Fe-4S binding domain DAO PF01266.19 gi|325969843|ref|YP_004246035.1| - 1.8e-08 33.6 1.0 4.4e-08 32.4 0.5 1.8 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|325969843|ref|YP_004246035.1| - 1.1e-07 31.1 2.0 1.1e-07 31.0 0.5 1.6 2 0 0 2 2 2 1 FAD binding domain Fer4_9 PF13187.1 gi|325969843|ref|YP_004246035.1| - 1.9e-07 31.2 5.5 1.9e-07 31.2 3.8 3.2 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|325969843|ref|YP_004246035.1| - 2.5e-07 30.4 9.2 3.9e-07 29.8 2.3 3.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|325969843|ref|YP_004246035.1| - 2.8e-07 31.0 13.5 0.004 17.6 0.5 4.4 4 0 0 4 4 4 2 4Fe-4S single cluster domain Pyr_redox PF00070.22 gi|325969843|ref|YP_004246035.1| - 1.8e-06 28.2 5.2 0.00056 20.2 1.8 3.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|325969843|ref|YP_004246035.1| - 2.4e-06 26.2 0.3 0.007 14.8 0.1 2.2 1 1 1 2 2 2 2 HI0933-like protein Fer4_16 PF13484.1 gi|325969843|ref|YP_004246035.1| - 2.6e-06 28.0 7.4 0.0014 19.3 4.3 3.6 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain NAD_binding_8 PF13450.1 gi|325969843|ref|YP_004246035.1| - 3.7e-06 26.8 0.4 1.9e-05 24.5 0.1 2.4 3 0 0 3 3 1 1 NAD(P)-binding Rossmann-like domain Fer4_8 PF13183.1 gi|325969843|ref|YP_004246035.1| - 2e-05 24.5 8.2 9.4e-05 22.3 3.0 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|325969843|ref|YP_004246035.1| - 9.7e-05 22.6 9.3 0.13 12.6 0.9 3.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|325969843|ref|YP_004246035.1| - 0.00048 19.2 0.2 0.00096 18.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.17 gi|325969843|ref|YP_004246035.1| - 0.00082 18.3 0.0 0.0014 17.6 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|325969843|ref|YP_004246035.1| - 0.0012 19.0 0.7 0.051 13.8 0.0 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.12 gi|325969843|ref|YP_004246035.1| - 0.0027 16.8 0.0 0.0074 15.4 0.0 1.7 1 0 0 1 1 1 1 Thi4 family Fer4_3 PF12798.2 gi|325969843|ref|YP_004246035.1| - 0.0047 17.4 27.4 0.014 15.9 6.0 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Pyr_redox_3 PF13738.1 gi|325969843|ref|YP_004246035.1| - 0.0052 16.8 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_4 PF12800.2 gi|325969843|ref|YP_004246035.1| - 0.0052 17.0 1.8 0.0052 17.0 1.2 4.2 4 0 0 4 4 3 1 4Fe-4S binding domain Lycopene_cycl PF05834.7 gi|325969843|ref|YP_004246035.1| - 0.017 14.0 0.0 0.026 13.4 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein ANF_receptor PF01094.23 gi|325969843|ref|YP_004246035.1| - 0.033 12.9 0.0 0.093 11.4 0.0 1.6 1 1 0 1 1 1 0 Receptor family ligand binding region Amino_oxidase PF01593.19 gi|325969843|ref|YP_004246035.1| - 0.12 11.3 0.2 0.23 10.4 0.1 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Fer4_18 PF13746.1 gi|325969843|ref|YP_004246035.1| - 0.84 10.1 14.2 0.45 10.9 3.0 3.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|325969843|ref|YP_004246035.1| - 1.9 8.9 16.2 6 7.3 1.9 4.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|325969843|ref|YP_004246035.1| - 2 8.3 11.4 0.045 13.6 1.5 2.9 3 1 0 3 3 3 0 4Fe-4S dicluster domain Pyr_redox_2 PF07992.9 gi|325969844|ref|YP_004246036.1| - 7.6e-19 68.3 0.0 1.1e-17 64.6 0.0 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.22 gi|325969844|ref|YP_004246036.1| - 1.5e-12 46.5 23.7 2.8e-07 29.8 2.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|325969844|ref|YP_004246036.1| - 9e-11 41.9 10.1 6.5e-05 23.2 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|325969844|ref|YP_004246036.1| - 1.2e-10 41.0 25.5 1.4e-09 37.6 6.6 3.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|325969844|ref|YP_004246036.1| - 3.4e-10 39.8 16.7 4.3e-09 36.2 3.5 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|325969844|ref|YP_004246036.1| - 3.4e-10 39.3 21.3 3.7e-06 26.5 3.2 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain DAO PF01266.19 gi|325969844|ref|YP_004246036.1| - 1.1e-09 37.7 0.5 1.4e-06 27.4 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|325969844|ref|YP_004246036.1| - 2.7e-09 36.3 0.3 4.3e-08 32.4 0.1 2.4 3 0 0 3 3 3 1 FAD binding domain Fer4_9 PF13187.1 gi|325969844|ref|YP_004246036.1| - 1.5e-08 34.7 35.1 2.2e-06 27.8 8.7 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain FAD_oxidored PF12831.2 gi|325969844|ref|YP_004246036.1| - 1.5e-08 34.1 0.4 9.4e-08 31.5 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_17 PF13534.1 gi|325969844|ref|YP_004246036.1| - 7e-08 32.7 4.4 7e-08 32.7 3.1 2.4 2 1 0 2 2 1 1 4Fe-4S dicluster domain GIDA PF01134.17 gi|325969844|ref|YP_004246036.1| - 8.1e-08 31.5 0.5 3.2e-07 29.5 0.2 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.22 gi|325969844|ref|YP_004246036.1| - 4.9e-07 30.0 0.5 3.4e-05 24.1 0.3 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_15 PF13459.1 gi|325969844|ref|YP_004246036.1| - 1.1e-06 29.0 10.8 0.0022 18.4 0.3 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|325969844|ref|YP_004246036.1| - 1.3e-06 28.0 14.0 3e-05 23.6 2.1 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Thi4 PF01946.12 gi|325969844|ref|YP_004246036.1| - 1.5e-06 27.5 0.1 2.5e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Fer4_16 PF13484.1 gi|325969844|ref|YP_004246036.1| - 4.1e-06 27.4 13.6 0.00028 21.5 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain HI0933_like PF03486.9 gi|325969844|ref|YP_004246036.1| - 4.6e-06 25.3 0.5 9.8e-06 24.2 0.3 1.5 1 1 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|325969844|ref|YP_004246036.1| - 5e-06 26.4 0.1 1.2e-05 25.2 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|325969844|ref|YP_004246036.1| - 2.3e-05 24.5 0.2 0.0015 18.6 0.1 2.6 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.1 gi|325969844|ref|YP_004246036.1| - 0.00028 21.2 14.8 0.0061 16.9 0.6 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain FAD_binding_3 PF01494.14 gi|325969844|ref|YP_004246036.1| - 0.00032 19.8 0.3 0.00045 19.3 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.7 gi|325969844|ref|YP_004246036.1| - 0.00041 19.3 0.1 0.00086 18.3 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein Fer4_4 PF12800.2 gi|325969844|ref|YP_004246036.1| - 0.0012 18.9 10.3 0.0028 17.8 1.1 3.9 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|325969844|ref|YP_004246036.1| - 0.0017 18.2 24.8 0.019 14.7 1.4 3.4 3 1 0 3 3 3 2 4Fe-4S dicluster domain Amino_oxidase PF01593.19 gi|325969844|ref|YP_004246036.1| - 0.012 14.7 0.7 0.22 10.5 0.0 2.5 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Fer4_13 PF13370.1 gi|325969844|ref|YP_004246036.1| - 0.018 15.4 14.5 0.021 15.1 0.2 3.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain Trp_halogenase PF04820.9 gi|325969844|ref|YP_004246036.1| - 0.026 13.1 1.6 0.64 8.5 0.2 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|325969844|ref|YP_004246036.1| - 0.032 13.9 0.4 1.6 8.5 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Fer4_3 PF12798.2 gi|325969844|ref|YP_004246036.1| - 0.064 13.8 34.8 0.14 12.7 5.3 4.0 4 0 0 4 4 3 0 4Fe-4S binding domain GDI PF00996.13 gi|325969844|ref|YP_004246036.1| - 0.1 10.9 0.0 0.16 10.2 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor FlpD PF02662.11 gi|325969845|ref|YP_004246037.1| - 1.7e-21 76.1 0.0 1.9e-21 76.0 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit zf-IS66 PF13005.2 gi|325969845|ref|YP_004246037.1| - 0.048 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 TusA PF01206.12 gi|325969846|ref|YP_004246038.1| - 1.9e-23 81.8 0.0 2.4e-23 81.4 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|325969846|ref|YP_004246038.1| - 0.14 11.7 0.0 1.5 8.4 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|325969847|ref|YP_004246039.1| - 5.3e-13 48.9 0.1 5.5e-12 45.6 0.0 1.9 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|325969847|ref|YP_004246039.1| - 3e-06 27.3 0.1 1.6e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family ABC_tran PF00005.22 gi|325969848|ref|YP_004246040.1| - 1.4e-06 28.6 0.0 1.6e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.1 gi|325969848|ref|YP_004246040.1| - 5.4e-05 23.6 0.0 5.7e-05 23.5 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|325969848|ref|YP_004246040.1| - 0.0034 16.8 0.0 0.0035 16.8 0.0 1.1 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|325969848|ref|YP_004246040.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_21 PF13304.1 gi|325969848|ref|YP_004246040.1| - 0.048 13.6 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain