# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- PLDc_2 PF13091.6 gi|325967529|ref|YP_004243721.1| - 1.6e-26 92.8 0.1 7e-15 55.1 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|325967529|ref|YP_004243721.1| - 8.1e-06 25.8 4.6 0.0035 17.4 0.4 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif PP_kinase_C PF13090.6 gi|325967529|ref|YP_004243721.1| - 0.0023 17.5 0.5 0.25 10.8 0.1 2.2 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 Regulator_TrmB PF11495.8 gi|325967529|ref|YP_004243721.1| - 0.0041 16.3 0.1 0.0086 15.3 0.0 1.7 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB DUF1848 PF08902.11 gi|325967529|ref|YP_004243721.1| - 0.0072 16.1 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) DUF2615 PF11027.8 gi|325967529|ref|YP_004243721.1| - 0.015 15.4 0.1 0.028 14.6 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2615) Glucos_trans_II PF14264.6 gi|325967529|ref|YP_004243721.1| - 0.019 14.3 0.1 0.019 14.3 0.1 1.5 2 0 0 2 2 2 0 Glucosyl transferase GtrII PP_kinase_C_1 PF17941.1 gi|325967529|ref|YP_004243721.1| - 0.027 14.0 0.2 0.2 11.2 0.0 2.1 2 0 0 2 2 2 0 Polyphosphate kinase C-terminal domain 1 RIFIN PF02009.16 gi|325967529|ref|YP_004243721.1| - 0.049 13.5 1.0 0.074 12.9 1.0 1.3 1 0 0 1 1 1 0 Rifin FixQ PF05545.11 gi|325967529|ref|YP_004243721.1| - 0.064 13.2 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Cbb3-type cytochrome oxidase component FixQ FbpA PF05833.11 gi|325967531|ref|YP_004243723.1| - 0.12 11.1 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Aminotran_1_2 PF00155.21 gi|325967532|ref|YP_004243724.1| - 2.5e-78 263.8 0.0 2.9e-78 263.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|325967532|ref|YP_004243724.1| - 4.9e-14 52.4 0.0 8.9e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|325967532|ref|YP_004243724.1| - 1.8e-09 37.0 0.0 5.3e-09 35.5 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|325967532|ref|YP_004243724.1| - 3.7e-08 32.3 0.0 6.7e-08 31.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|325967532|ref|YP_004243724.1| - 0.00044 19.6 0.0 0.00098 18.5 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase Radical_SAM PF04055.21 gi|325967532|ref|YP_004243724.1| - 0.028 14.8 0.0 5.2 7.4 0.0 3.0 2 1 1 3 3 3 0 Radical SAM superfamily OKR_DC_1 PF01276.20 gi|325967532|ref|YP_004243724.1| - 0.035 12.9 0.0 0.056 12.2 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Phage_T7_Capsid PF05396.11 gi|325967532|ref|YP_004243724.1| - 0.078 13.3 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Phage T7 capsid assembly protein AP_endonuc_2 PF01261.24 gi|325967532|ref|YP_004243724.1| - 0.13 11.6 0.0 1.1 8.6 0.0 2.5 3 1 0 3 3 3 0 Xylose isomerase-like TIM barrel Cupin_2 PF07883.11 gi|325967533|ref|YP_004243725.1| - 1.4e-14 53.5 0.0 1.8e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|325967533|ref|YP_004243725.1| - 1.1e-08 35.1 0.0 1.5e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|325967533|ref|YP_004243725.1| - 1.3e-06 28.4 0.0 1.4e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|325967533|ref|YP_004243725.1| - 3.1e-06 26.9 0.0 4.3e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|325967533|ref|YP_004243725.1| - 0.0008 19.3 0.0 0.00099 19.0 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain Ectoine_synth PF06339.12 gi|325967533|ref|YP_004243725.1| - 0.0014 18.8 0.0 0.0016 18.6 0.0 1.0 1 0 0 1 1 1 1 Ectoine synthase PCO_ADO PF07847.12 gi|325967533|ref|YP_004243725.1| - 0.007 15.8 0.0 0.0078 15.7 0.0 1.3 1 0 0 1 1 1 1 PCO_ADO Cupin_3 PF05899.12 gi|325967533|ref|YP_004243725.1| - 0.015 15.0 0.0 0.027 14.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|325967533|ref|YP_004243725.1| - 0.029 14.0 0.0 0.04 13.6 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_6 PF12852.7 gi|325967533|ref|YP_004243725.1| - 0.067 12.9 0.0 0.076 12.7 0.0 1.1 1 0 0 1 1 1 0 Cupin CENP-C_C PF11699.8 gi|325967533|ref|YP_004243725.1| - 0.13 12.5 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Mif2/CENP-C like Beta-lactamase PF00144.24 gi|325967534|ref|YP_004243726.1| - 1.6e-64 218.3 0.0 2.4e-64 217.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|325967534|ref|YP_004243726.1| - 6.5e-26 90.2 0.2 1.3e-25 89.3 0.2 1.5 1 0 0 1 1 1 1 Pab87 octamerisation domain Lactamase_B PF00753.27 gi|325967535|ref|YP_004243727.1| - 1.5e-24 87.2 0.0 2.3e-24 86.5 0.0 1.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|325967535|ref|YP_004243727.1| - 0.028 14.0 0.0 0.046 13.2 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Methyltransf_21 PF05050.12 gi|325967536|ref|YP_004243728.1| - 9.4e-09 35.5 0.0 1.6e-08 34.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|325967536|ref|YP_004243728.1| - 0.00012 21.8 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|325967536|ref|YP_004243728.1| - 0.079 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|325967536|ref|YP_004243728.1| - 0.12 13.0 0.0 0.23 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Transp_cyt_pur PF02133.15 gi|325967537|ref|YP_004243729.1| - 3e-35 121.9 45.7 7.1e-35 120.6 45.7 1.6 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AA_permease PF00324.21 gi|325967538|ref|YP_004243730.1| - 2.1e-31 109.1 54.4 1.4e-30 106.3 54.4 1.9 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|325967538|ref|YP_004243730.1| - 3.2e-28 98.7 52.4 5e-28 98.1 52.4 1.2 1 0 0 1 1 1 1 Amino acid permease ODV-E18 PF10717.9 gi|325967538|ref|YP_004243730.1| - 0.15 12.0 0.1 0.15 12.0 0.1 4.1 5 0 0 5 5 5 0 Occlusion-derived virus envelope protein ODV-E18 MFS_1 PF07690.16 gi|325967539|ref|YP_004243731.1| - 5.7e-39 134.0 72.1 2.5e-35 122.1 47.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|325967539|ref|YP_004243731.1| - 0.00067 18.6 16.9 0.00067 18.6 16.9 2.5 1 1 1 2 2 2 1 MFS_1 like family Thermopsin PF05317.11 gi|325967540|ref|YP_004243732.1| - 1.3e-64 218.2 20.1 1.3e-64 218.2 20.1 3.2 2 2 1 3 3 3 1 Thermopsin DUF2651 PF10852.8 gi|325967540|ref|YP_004243732.1| - 0.77 10.4 13.2 0.044 14.4 4.3 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2651) Asp_protease_2 PF13650.6 gi|325967541|ref|YP_004243733.1| - 3.6e-05 24.3 0.1 0.00011 22.8 0.1 1.7 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|325967541|ref|YP_004243733.1| - 0.00014 22.4 0.0 0.00021 21.8 0.0 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease TAXi_N PF14543.6 gi|325967541|ref|YP_004243733.1| - 0.092 13.0 0.0 0.092 13.0 0.0 1.2 1 0 0 1 1 1 0 Xylanase inhibitor N-terminal Abhydrolase_6 PF12697.7 gi|325967542|ref|YP_004243734.1| - 1.8e-07 32.0 0.3 2.4e-07 31.6 0.3 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|325967542|ref|YP_004243734.1| - 1.8e-07 30.7 0.1 9.6e-07 28.3 0.0 2.1 3 1 0 3 3 3 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|325967542|ref|YP_004243734.1| - 6.4e-07 29.3 0.0 1.1e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold PGAP1 PF07819.13 gi|325967542|ref|YP_004243734.1| - 0.017 14.9 0.1 0.04 13.6 0.1 1.6 1 0 0 1 1 1 0 PGAP1-like protein Ndr PF03096.14 gi|325967542|ref|YP_004243734.1| - 0.11 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Ndr family DUF2070 PF09843.9 gi|325967543|ref|YP_004243735.1| - 0.12 10.7 4.8 0.13 10.5 4.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ECH_1 PF00378.20 gi|325967544|ref|YP_004243736.1| - 2.1e-43 148.5 0.0 2.5e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|325967544|ref|YP_004243736.1| - 1.3e-13 51.2 0.0 1.8e-12 47.4 0.0 2.3 1 1 1 2 2 2 1 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|325967544|ref|YP_004243736.1| - 0.2 11.6 0.0 4.1 7.3 0.0 2.1 2 0 0 2 2 2 0 Peptidase family S49 MazE_antitoxin PF04014.18 gi|325967545|ref|YP_004243737.1| - 1.6e-12 47.1 0.3 2e-12 46.7 0.3 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325967545|ref|YP_004243737.1| - 0.00038 20.8 0.2 0.00039 20.8 0.2 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin CDC48_N PF02359.18 gi|325967545|ref|YP_004243737.1| - 0.012 15.8 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain eIF-1a PF01176.19 gi|325967545|ref|YP_004243737.1| - 0.021 14.6 1.3 0.028 14.2 1.3 1.3 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 PSD2 PF07624.11 gi|325967545|ref|YP_004243737.1| - 0.033 14.0 0.0 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1585) PIN PF01850.21 gi|325967546|ref|YP_004243738.1| - 1e-11 45.4 0.3 1.1e-11 45.3 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|325967546|ref|YP_004243738.1| - 0.0009 19.5 0.1 0.012 15.9 0.1 2.2 1 1 0 1 1 1 1 PIN like domain EpuA PF11772.8 gi|325967547|ref|YP_004243739.1| - 0.39 10.4 0.1 0.39 10.4 0.1 3.2 4 0 0 4 4 4 0 DNA-directed RNA polymerase subunit beta HemY_N PF07219.13 gi|325967547|ref|YP_004243739.1| - 8.1 6.7 9.8 5.2 7.3 2.7 2.3 2 0 0 2 2 2 0 HemY protein N-terminus Penicil_amidase PF01804.18 gi|325967548|ref|YP_004243740.1| - 2.5e-157 525.8 0.0 3.1e-157 525.5 0.0 1.0 1 0 0 1 1 1 1 Penicillin amidase Sugar_tr PF00083.24 gi|325967549|ref|YP_004243741.1| - 3e-52 178.0 24.9 4e-52 177.6 24.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325967549|ref|YP_004243741.1| - 8.2e-34 117.1 57.9 5.5e-23 81.5 22.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|325967549|ref|YP_004243741.1| - 0.00031 20.2 26.0 0.0011 18.3 8.1 2.3 2 0 0 2 2 2 2 Uncharacterised MFS-type transporter YbfB Abhydrolase_1 PF00561.20 gi|325967550|ref|YP_004243742.1| - 5.2e-25 88.6 0.0 8e-17 61.7 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|325967550|ref|YP_004243742.1| - 2e-21 76.3 0.0 2.7e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|325967550|ref|YP_004243742.1| - 1.8e-16 61.4 0.0 2.1e-16 61.2 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|325967550|ref|YP_004243742.1| - 2.5e-07 30.4 0.0 0.0041 16.6 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Ndr PF03096.14 gi|325967550|ref|YP_004243742.1| - 3.8e-07 29.1 0.0 7.1e-07 28.2 0.0 1.5 1 1 0 1 1 1 1 Ndr family Abhydrolase_5 PF12695.7 gi|325967550|ref|YP_004243742.1| - 0.00011 22.0 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|325967550|ref|YP_004243742.1| - 0.00019 21.5 0.0 0.00034 20.7 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein FSH1 PF03959.13 gi|325967550|ref|YP_004243742.1| - 0.013 15.2 0.0 0.02 14.5 0.0 1.3 2 0 0 2 2 2 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.16 gi|325967550|ref|YP_004243742.1| - 0.031 14.1 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Esterase PF00756.20 gi|325967550|ref|YP_004243742.1| - 0.051 13.2 0.0 0.081 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Esterase_phd PF10503.9 gi|325967550|ref|YP_004243742.1| - 0.068 12.7 0.0 0.3 10.6 0.0 1.8 2 0 0 2 2 2 0 Esterase PHB depolymerase Abhydrolase_3 PF07859.13 gi|325967550|ref|YP_004243742.1| - 0.23 11.3 0.0 0.41 10.5 0.0 1.4 1 1 0 1 1 1 0 alpha/beta hydrolase fold AMP-binding PF00501.28 gi|325967551|ref|YP_004243743.1| - 2.5e-77 260.3 0.0 2.1e-76 257.2 0.0 1.9 1 1 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325967551|ref|YP_004243743.1| - 1.4e-20 74.0 2.3 2.4e-20 73.3 2.3 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF5402 PF17393.2 gi|325967551|ref|YP_004243743.1| - 0.085 12.8 0.1 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5402) ACP_syn_III_C PF08541.10 gi|325967552|ref|YP_004243744.1| - 1.5e-19 69.9 0.0 3.7e-19 68.7 0.0 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|325967552|ref|YP_004243744.1| - 1.6e-12 47.1 0.4 2.8e-12 46.3 0.4 1.4 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FAE1_CUT1_RppA PF08392.12 gi|325967552|ref|YP_004243744.1| - 0.00028 20.3 1.0 0.002 17.5 0.3 2.2 1 1 0 2 2 2 1 FAE1/Type III polyketide synthase-like protein Thiolase_N PF00108.23 gi|325967552|ref|YP_004243744.1| - 0.038 13.4 1.3 1.5 8.1 0.0 3.0 2 1 1 3 3 3 0 Thiolase, N-terminal domain TetR_N PF00440.23 gi|325967553|ref|YP_004243745.1| - 1.5e-16 59.9 0.2 3e-16 58.9 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_9 PF14514.6 gi|325967553|ref|YP_004243745.1| - 0.0058 16.8 0.1 0.012 15.7 0.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain HTH_Tnp_1_2 PF13022.6 gi|325967553|ref|YP_004243745.1| - 0.01 16.0 0.1 0.035 14.2 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix of insertion element transposase BLUF PF04940.12 gi|325967553|ref|YP_004243745.1| - 0.063 13.4 0.2 0.16 12.1 0.0 1.8 2 0 0 2 2 2 0 Sensors of blue-light using FAD DUF4108 PF13390.6 gi|325967553|ref|YP_004243745.1| - 0.074 13.0 0.3 0.074 13.0 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4108) Acyl-CoA_dh_1 PF00441.24 gi|325967554|ref|YP_004243746.1| - 4.4e-42 143.8 1.2 7.3e-42 143.1 0.3 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|325967554|ref|YP_004243746.1| - 3.5e-18 65.6 0.0 8.6e-18 64.3 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|325967554|ref|YP_004243746.1| - 7.6e-11 42.4 0.1 3.1e-10 40.5 0.0 2.1 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, C-terminal domain AidB_N PF18158.1 gi|325967554|ref|YP_004243746.1| - 1.2e-08 35.0 0.0 4.5e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 Adaptive response protein AidB N-terminal domain AMP-binding PF00501.28 gi|325967555|ref|YP_004243747.1| - 3.2e-78 263.2 0.0 4e-78 262.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325967555|ref|YP_004243747.1| - 7.2e-16 58.9 0.0 1.5e-15 57.9 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.12 gi|325967555|ref|YP_004243747.1| - 0.17 11.7 0.0 0.63 9.9 0.0 2.0 1 0 0 1 1 1 0 HTH DNA binding domain CBS PF00571.28 gi|325967556|ref|YP_004243748.1| - 2.3e-20 72.8 1.4 7.6e-09 35.9 0.0 2.2 2 0 0 2 2 2 2 CBS domain DUF3659 PF12396.8 gi|325967556|ref|YP_004243748.1| - 0.17 11.8 1.4 21 5.1 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) POR PF01558.18 gi|325967557|ref|YP_004243749.1| - 2e-21 76.9 0.0 2.5e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|325967558|ref|YP_004243750.1| - 6.4e-12 44.8 13.4 3.9e-06 26.4 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325967558|ref|YP_004243750.1| - 2.1e-09 37.8 30.2 6.2e-06 26.7 10.9 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325967558|ref|YP_004243750.1| - 1.4e-08 34.5 12.2 0.00049 20.1 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325967558|ref|YP_004243750.1| - 8.8e-08 31.8 9.5 0.0012 18.8 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325967558|ref|YP_004243750.1| - 1.1e-07 31.8 7.0 0.00047 20.2 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325967558|ref|YP_004243750.1| - 1.2e-07 31.8 6.6 3.1e-07 30.4 6.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325967558|ref|YP_004243750.1| - 3.8e-06 27.0 9.8 0.0014 18.9 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|325967558|ref|YP_004243750.1| - 7.6e-06 26.0 9.6 8.3e-05 22.6 10.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|325967558|ref|YP_004243750.1| - 5.3e-05 23.6 5.7 0.05 14.1 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325967558|ref|YP_004243750.1| - 9.3e-05 23.3 10.8 0.21 12.6 11.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|325967558|ref|YP_004243750.1| - 0.00031 21.4 9.0 0.019 15.7 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|325967558|ref|YP_004243750.1| - 0.00062 20.3 8.9 0.086 13.4 1.6 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|325967558|ref|YP_004243750.1| - 0.00086 20.1 5.8 0.16 12.9 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325967558|ref|YP_004243750.1| - 0.0021 18.6 11.9 0.44 11.1 12.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325967558|ref|YP_004243750.1| - 0.016 16.1 13.9 0.68 11.0 4.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|325967558|ref|YP_004243750.1| - 0.045 13.9 2.5 0.076 13.2 2.5 1.5 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|325967558|ref|YP_004243750.1| - 0.1 12.8 7.1 2.2 8.5 1.4 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain TPP_enzyme_C PF02775.21 gi|325967559|ref|YP_004243751.1| - 3.3e-31 108.2 0.0 4.3e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Phage_holin_3_2 PF04550.12 gi|325967559|ref|YP_004243751.1| - 0.04 14.4 0.1 0.1 13.2 0.1 1.7 1 0 0 1 1 1 0 Phage holin family 2 POR_N PF01855.19 gi|325967560|ref|YP_004243752.1| - 1.6e-63 214.5 0.2 2.1e-63 214.2 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|325967560|ref|YP_004243752.1| - 5.7e-19 68.3 0.0 1e-18 67.5 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|325967560|ref|YP_004243752.1| - 1.4e-09 37.8 0.3 3e-09 36.7 0.2 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|325967560|ref|YP_004243752.1| - 2.7e-06 27.3 0.0 5.1e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain Met_synt_B12 PF02965.17 gi|325967560|ref|YP_004243752.1| - 0.091 12.2 0.1 0.16 11.4 0.1 1.3 1 0 0 1 1 1 0 Vitamin B12 dependent methionine synthase, activation domain SDH_sah PF01972.16 gi|325967561|ref|YP_004243753.1| - 2.4e-124 414.0 0.7 2.7e-124 413.8 0.7 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|325967561|ref|YP_004243753.1| - 1.9e-06 27.9 0.2 4.9e-06 26.6 0.1 1.7 2 0 0 2 2 2 1 Clp protease Peptidase_S49 PF01343.18 gi|325967561|ref|YP_004243753.1| - 0.00038 20.4 0.0 0.0006 19.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 Dak1_2 PF13684.6 gi|325967561|ref|YP_004243753.1| - 0.041 12.9 2.0 0.25 10.4 0.1 2.0 2 0 0 2 2 2 0 Dihydroxyacetone kinase family ECH_1 PF00378.20 gi|325967561|ref|YP_004243753.1| - 0.096 12.0 0.1 0.17 11.1 0.1 1.4 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF4064 PF13273.6 gi|325967562|ref|YP_004243754.1| - 0.77 10.1 10.1 4.5 7.6 2.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Orf78 PF06024.12 gi|325967562|ref|YP_004243754.1| - 3.5 8.0 10.0 2.1 8.7 1.1 2.3 2 0 0 2 2 2 0 Orf78 (ac78) Plant_vir_prot PF01307.17 gi|325967562|ref|YP_004243754.1| - 5 7.4 7.0 2.1 8.6 0.6 2.4 2 1 0 2 2 2 0 Plant viral movement protein Peptidase_M20 PF01546.28 gi|325967563|ref|YP_004243755.1| - 1.5e-34 119.5 0.0 1.9e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|325967563|ref|YP_004243755.1| - 1.1e-16 60.7 0.0 4.3e-16 58.8 0.0 2.0 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|325967563|ref|YP_004243755.1| - 1.3e-06 28.3 0.0 1.9e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 AAA_5 PF07728.14 gi|325967564|ref|YP_004243756.1| - 1.2e-13 51.2 0.0 1.1e-12 48.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|325967564|ref|YP_004243756.1| - 1.9e-05 25.1 0.1 0.00035 21.0 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|325967564|ref|YP_004243756.1| - 3e-05 24.4 0.0 0.00023 21.6 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|325967564|ref|YP_004243756.1| - 0.0032 17.6 0.0 0.0094 16.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain TIP49 PF06068.13 gi|325967564|ref|YP_004243756.1| - 0.0092 15.2 0.0 0.014 14.6 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 gi|325967564|ref|YP_004243756.1| - 0.0098 15.6 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|325967564|ref|YP_004243756.1| - 0.012 15.3 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|325967564|ref|YP_004243756.1| - 0.015 14.8 0.0 0.53 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.11 gi|325967564|ref|YP_004243756.1| - 0.022 14.6 0.0 1.6 8.6 0.0 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|325967564|ref|YP_004243756.1| - 0.023 14.1 0.0 0.05 13.0 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_8 PF12780.7 gi|325967564|ref|YP_004243756.1| - 0.025 13.9 0.1 0.18 11.1 0.1 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 AAA_18 PF13238.6 gi|325967564|ref|YP_004243756.1| - 0.044 14.3 0.0 0.13 12.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|325967564|ref|YP_004243756.1| - 0.088 12.9 0.0 0.5 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) AAA_24 PF13479.6 gi|325967564|ref|YP_004243756.1| - 0.12 12.1 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|325967564|ref|YP_004243756.1| - 0.18 12.1 0.1 0.96 9.7 0.1 2.3 1 1 0 1 1 1 0 AAA domain DUF3919 PF13057.6 gi|325967564|ref|YP_004243756.1| - 0.22 11.1 3.6 0.079 12.5 0.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3919) BLYB PF05289.11 gi|325967565|ref|YP_004243757.1| - 0.025 14.8 0.2 0.025 14.8 0.2 2.7 3 0 0 3 3 3 0 Borrelia hemolysin accessory protein OmpH PF03938.14 gi|325967565|ref|YP_004243757.1| - 0.03 14.7 0.8 1.2 9.5 0.1 3.0 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) Cep57_MT_bd PF06657.13 gi|325967565|ref|YP_004243757.1| - 0.047 14.1 0.2 0.13 12.8 0.2 1.7 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 TMF_DNA_bd PF12329.8 gi|325967565|ref|YP_004243757.1| - 0.15 12.1 0.8 0.29 11.1 0.8 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding LcrG PF07216.12 gi|325967565|ref|YP_004243757.1| - 0.16 11.9 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 LcrG protein Pterin_4a PF01329.19 gi|325967566|ref|YP_004243758.1| - 3.4e-26 91.2 0.1 3.7e-26 91.1 0.1 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Glycos_transf_2 PF00535.26 gi|325967567|ref|YP_004243759.1| - 7e-14 52.0 0.1 1.1e-13 51.3 0.1 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325967567|ref|YP_004243759.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_hydro_1 PF00232.18 gi|325967568|ref|YP_004243760.1| - 4.6e-66 223.1 5.2 6.3e-58 196.3 1.8 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 PIN PF01850.21 gi|325967569|ref|YP_004243761.1| - 8.6e-07 29.5 0.1 1e-06 29.2 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF615 PF04751.14 gi|325967570|ref|YP_004243762.1| - 0.02 14.9 0.1 0.025 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF615) OrfB_Zn_ribbon PF07282.11 gi|325967571|ref|YP_004243763.1| - 6.6e-11 42.0 0.0 1.3e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|325967571|ref|YP_004243763.1| - 0.0046 16.9 0.2 0.0081 16.1 0.2 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon CEP63 PF17045.5 gi|325967571|ref|YP_004243763.1| - 0.061 13.2 0.2 0.093 12.6 0.2 1.2 1 0 0 1 1 1 0 Centrosomal protein of 63 kDa DUF4776 PF16003.5 gi|325967571|ref|YP_004243763.1| - 0.076 12.0 0.4 0.11 11.5 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) Prok-RING_1 PF14446.6 gi|325967571|ref|YP_004243763.1| - 0.085 12.8 0.6 0.17 11.8 0.6 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DNA_ligase_ZBD PF03119.16 gi|325967571|ref|YP_004243763.1| - 0.12 12.4 0.3 0.26 11.4 0.3 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Auto_anti-p27 PF06677.12 gi|325967571|ref|YP_004243763.1| - 0.13 12.4 1.6 0.22 11.7 1.6 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) YhfH PF14149.6 gi|325967571|ref|YP_004243763.1| - 0.13 12.2 1.1 0.33 11.0 0.1 1.9 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.10 gi|325967571|ref|YP_004243763.1| - 0.16 12.1 0.4 1.1 9.4 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|325967571|ref|YP_004243763.1| - 0.2 11.7 0.3 0.32 11.0 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|325967571|ref|YP_004243763.1| - 0.22 11.0 3.0 0.73 9.3 3.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|325967571|ref|YP_004243763.1| - 1.3 8.6 2.8 4.4 6.9 2.8 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|325967571|ref|YP_004243763.1| - 1.9 8.3 4.2 58 3.6 4.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain NTP_transf_2 PF01909.23 gi|325967572|ref|YP_004243764.1| - 5.4e-09 36.2 0.3 6.7e-09 35.9 0.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|325967572|ref|YP_004243764.1| - 0.00032 20.7 0.1 0.00038 20.5 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|325967572|ref|YP_004243764.1| - 0.042 14.0 0.0 0.049 13.8 0.0 1.1 1 0 0 1 1 1 0 DNA polymerase beta palm HTH_48 PF17906.1 gi|325967572|ref|YP_004243764.1| - 0.15 12.2 0.0 0.59 10.3 0.0 1.9 2 0 0 2 2 2 0 HTH domain in Mos1 transposase RseC_MucC PF04246.12 gi|325967573|ref|YP_004243765.1| - 0.6 10.1 2.1 1.5 8.8 0.2 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Cupin_2 PF07883.11 gi|325967575|ref|YP_004243767.1| - 1.2e-18 66.6 0.0 1.6e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|325967575|ref|YP_004243767.1| - 3.4e-12 46.5 0.0 3.7e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|325967575|ref|YP_004243767.1| - 2.4e-07 30.6 0.1 8.2e-07 28.8 0.1 1.7 1 1 0 1 1 1 1 Auxin binding protein AraC_binding PF02311.19 gi|325967575|ref|YP_004243767.1| - 2.8e-07 30.5 0.0 3.7e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|325967575|ref|YP_004243767.1| - 7.7e-06 25.6 0.0 8.8e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Cupin DMSP_lyase PF16867.5 gi|325967575|ref|YP_004243767.1| - 0.0013 18.4 0.0 0.0016 18.1 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Ectoine_synth PF06339.12 gi|325967575|ref|YP_004243767.1| - 0.0018 18.5 0.0 0.002 18.3 0.0 1.0 1 0 0 1 1 1 1 Ectoine synthase Cupin_7 PF12973.7 gi|325967575|ref|YP_004243767.1| - 0.018 14.9 0.0 0.028 14.3 0.0 1.4 1 1 0 1 1 1 0 ChrR Cupin-like domain GPI PF06560.11 gi|325967575|ref|YP_004243767.1| - 0.035 13.4 0.1 0.051 12.8 0.1 1.3 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) JmjC PF02373.22 gi|325967575|ref|YP_004243767.1| - 0.1 13.1 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 JmjC domain, hydroxylase Cupin_3 PF05899.12 gi|325967575|ref|YP_004243767.1| - 0.16 11.7 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) PaREP1 PF05942.11 gi|325967576|ref|YP_004243768.1| - 8.1e-27 93.4 1.8 1.1e-26 93.0 1.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HTH_45 PF14947.6 gi|325967576|ref|YP_004243768.1| - 0.14 12.1 0.1 0.34 10.9 0.1 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix OFeT_1 PF16955.5 gi|325967577|ref|YP_004243769.1| - 2.9e-103 344.0 15.1 3.3e-103 343.8 15.1 1.0 1 0 0 1 1 1 1 Ferrous iron uptake permease, iron-lead transporter DUF3185 PF11381.8 gi|325967577|ref|YP_004243769.1| - 0.0078 16.2 0.4 0.3 11.1 0.0 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF3185) UPF0016 PF01169.19 gi|325967577|ref|YP_004243769.1| - 0.2 12.0 14.7 1.1 9.7 2.2 2.5 2 1 0 2 2 2 0 Uncharacterized protein family UPF0016 YbjM PF11045.8 gi|325967577|ref|YP_004243769.1| - 0.36 11.0 5.1 0.2 11.8 1.6 2.1 2 0 0 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae MNHE PF01899.16 gi|325967577|ref|YP_004243769.1| - 0.75 9.5 12.7 0.4 10.4 3.5 2.2 1 1 1 2 2 2 0 Na+/H+ ion antiporter subunit Nitro_FeMo-Co PF02579.17 gi|325967578|ref|YP_004243770.1| - 1e-16 61.0 0.0 1.3e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor LVIVD PF08309.11 gi|325967578|ref|YP_004243770.1| - 0.075 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 LVIVD repeat Band_7 PF01145.25 gi|325967580|ref|YP_004243772.1| - 5.6e-18 65.6 1.4 8.8e-18 64.9 1.4 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|325967580|ref|YP_004243772.1| - 1.3e-15 57.7 0.4 2.5e-15 56.8 0.4 1.5 1 1 0 1 1 1 1 SPFH domain-Band 7 family FAA_hydrolase_N PF09298.11 gi|325967580|ref|YP_004243772.1| - 0.14 12.3 0.0 1 9.6 0.0 2.1 2 0 0 2 2 2 0 Fumarylacetoacetase N-terminal DUF2427 PF10348.9 gi|325967581|ref|YP_004243773.1| - 0.022 14.5 4.9 0.038 13.8 4.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) Thioredoxin_3 PF13192.6 gi|325967582|ref|YP_004243774.1| - 0.00011 22.1 0.0 0.00023 21.1 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin domain PRMT5 PF05185.16 gi|325967582|ref|YP_004243774.1| - 0.062 13.1 0.1 0.076 12.9 0.1 1.1 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase AA_permease_2 PF13520.6 gi|325967583|ref|YP_004243775.1| - 1.2e-32 113.3 52.2 1.2e-32 113.3 52.2 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|325967583|ref|YP_004243775.1| - 4.8e-30 104.6 43.7 4.8e-30 104.6 43.7 2.1 1 1 1 2 2 2 1 Amino acid permease Endonuclease_5 PF04493.14 gi|325967586|ref|YP_004243778.1| - 4.6e-51 173.3 0.0 5.5e-51 173.1 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V ThiI PF02568.14 gi|325967587|ref|YP_004243779.1| - 4.9e-56 189.5 0.0 7.8e-56 188.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|325967587|ref|YP_004243779.1| - 5.5e-19 68.7 1.6 6.5e-19 68.5 0.4 1.7 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.20 gi|325967587|ref|YP_004243779.1| - 1.2e-06 28.9 0.0 4e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 Rhodanese-like domain QueC PF06508.13 gi|325967587|ref|YP_004243779.1| - 0.0041 16.7 0.0 0.8 9.2 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC Proteasome PF00227.26 gi|325967588|ref|YP_004243780.1| - 2.2e-50 170.8 0.2 2.6e-50 170.6 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF1131 PF06572.12 gi|325967589|ref|YP_004243781.1| - 0.029 14.1 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) OrfB_Zn_ribbon PF07282.11 gi|325967591|ref|YP_004243783.1| - 0.0036 17.2 0.0 2.9 7.9 0.0 2.4 2 0 0 2 2 2 2 Putative transposase DNA-binding domain TAF4 PF05236.14 gi|325967591|ref|YP_004243783.1| - 0.36 10.5 3.6 0.52 10.0 3.6 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID component TAF4 family Carbam_trans_N PF02543.15 gi|325967592|ref|YP_004243784.1| - 7.5e-09 35.7 0.0 7.5e-09 35.7 0.0 1.0 1 0 0 1 1 1 1 Carbamoyltransferase N-terminus MafB19-deam PF14437.6 gi|325967592|ref|YP_004243784.1| - 0.095 12.5 0.0 0.11 12.3 0.0 1.1 1 0 0 1 1 1 0 MafB19-like deaminase Glycos_transf_2 PF00535.26 gi|325967593|ref|YP_004243785.1| - 8.4e-11 42.0 1.4 1.2e-09 38.2 0.2 2.6 3 0 0 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325967593|ref|YP_004243785.1| - 8.9e-06 25.8 0.0 3.1e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|325967594|ref|YP_004243786.1| - 1.3e-20 73.7 0.1 2.1e-20 72.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325967594|ref|YP_004243786.1| - 3.1e-14 53.5 0.0 4.8e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325967594|ref|YP_004243786.1| - 0.00077 19.5 0.6 0.0033 17.4 0.1 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|325967594|ref|YP_004243786.1| - 0.045 14.1 0.0 0.089 13.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|325967595|ref|YP_004243787.1| - 2.6e-16 60.1 0.1 4.2e-16 59.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|325967595|ref|YP_004243787.1| - 2e-05 24.5 0.3 3e-05 23.9 0.3 1.4 1 1 0 1 1 1 1 Met-10+ like-protein V_cholerae_RfbT PF05575.11 gi|325967595|ref|YP_004243787.1| - 0.0003 20.2 1.4 0.00047 19.5 1.4 1.3 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein DUF2079 PF09852.9 gi|325967596|ref|YP_004243788.1| - 2.2e-27 96.1 42.9 2.2e-27 96.1 42.9 2.4 2 1 0 2 2 2 1 Predicted membrane protein (DUF2079) Glycos_transf_1 PF00534.20 gi|325967599|ref|YP_004243791.1| - 4.9e-16 58.7 0.0 8.2e-16 58.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325967599|ref|YP_004243791.1| - 2e-11 44.5 0.0 3.8e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325967599|ref|YP_004243791.1| - 2.9e-09 37.2 0.0 1.1e-08 35.2 0.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|325967599|ref|YP_004243791.1| - 0.0007 20.1 0.0 0.0012 19.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain PaREP1 PF05942.11 gi|325967600|ref|YP_004243792.1| - 3.8e-31 107.4 0.5 3.8e-31 107.4 0.5 1.9 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Phage_holin_6_1 PF09682.10 gi|325967600|ref|YP_004243792.1| - 0.21 12.0 1.3 1.6 9.2 0.1 2.3 3 0 0 3 3 3 0 Bacteriophage holin of superfamily 6 (Holin_LLH) LprI PF07007.12 gi|325967600|ref|YP_004243792.1| - 0.21 12.2 2.9 4.3 8.0 0.0 2.3 2 0 0 2 2 2 0 Lysozyme inhibitor LprI Surfac_D-trimer PF09006.11 gi|325967601|ref|YP_004243793.1| - 0.0017 18.2 0.0 0.22 11.4 0.0 2.2 2 0 0 2 2 2 1 Lung surfactant protein D coiled-coil trimerisation DUF1664 PF07889.12 gi|325967601|ref|YP_004243793.1| - 0.013 15.6 0.0 0.027 14.5 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) TolA_bind_tri PF16331.5 gi|325967601|ref|YP_004243793.1| - 0.014 15.5 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 TolA binding protein trimerisation DUF2730 PF10805.8 gi|325967601|ref|YP_004243793.1| - 0.017 15.2 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) FlaC_arch PF05377.11 gi|325967601|ref|YP_004243793.1| - 0.021 15.2 0.1 0.064 13.6 0.1 1.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Phage_tail_NK PF16532.5 gi|325967601|ref|YP_004243793.1| - 0.023 14.3 0.0 0.55 9.8 0.0 2.1 1 1 1 2 2 2 0 Sf6-type phage tail needle knob or tip of some Caudovirales XhlA PF10779.9 gi|325967601|ref|YP_004243793.1| - 0.034 14.3 0.9 0.072 13.3 0.0 1.9 2 0 0 2 2 2 0 Haemolysin XhlA PEARLI-4 PF05278.12 gi|325967601|ref|YP_004243793.1| - 0.04 13.5 0.0 0.11 12.1 0.0 1.4 1 1 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) ABC_tran_CTD PF16326.5 gi|325967601|ref|YP_004243793.1| - 0.064 13.5 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF4988 PF16378.5 gi|325967601|ref|YP_004243793.1| - 0.11 12.2 0.0 0.26 10.9 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function CLZ PF16526.5 gi|325967601|ref|YP_004243793.1| - 0.2 12.0 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Kre28 PF17097.5 gi|325967601|ref|YP_004243793.1| - 0.23 10.4 0.0 0.31 9.9 0.0 1.1 1 0 0 1 1 1 0 Spindle pole body component WASH_WAHD PF11945.8 gi|325967601|ref|YP_004243793.1| - 0.24 10.9 0.0 0.3 10.6 0.0 1.1 1 0 0 1 1 1 0 WAHD domain of WASH complex PDDEXK_10 PF07788.11 gi|325967602|ref|YP_004243794.1| - 1e-26 92.6 0.9 2e-26 91.7 0.9 1.5 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|325967602|ref|YP_004243794.1| - 9.4e-25 86.6 19.8 3.4e-21 75.2 19.7 3.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) DUF1664 PF07889.12 gi|325967602|ref|YP_004243794.1| - 0.00026 21.0 5.9 0.06 13.4 1.6 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) SHE3 PF17078.5 gi|325967602|ref|YP_004243794.1| - 0.00077 19.2 11.2 0.0011 18.7 11.2 1.2 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 DUF948 PF06103.11 gi|325967602|ref|YP_004243794.1| - 0.0013 18.9 1.1 1.6 9.1 0.1 3.2 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) GAS PF13851.6 gi|325967602|ref|YP_004243794.1| - 0.0014 18.0 20.9 0.002 17.5 20.9 1.1 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding YabA PF06156.13 gi|325967602|ref|YP_004243794.1| - 0.0032 18.1 7.3 0.0032 18.1 7.3 2.7 1 1 1 2 2 2 2 Initiation control protein YabA Cauli_AT PF03233.13 gi|325967602|ref|YP_004243794.1| - 0.0038 17.2 5.8 0.0078 16.2 1.5 2.2 1 1 1 2 2 2 1 Aphid transmission protein Snapin_Pallidin PF14712.6 gi|325967602|ref|YP_004243794.1| - 0.0045 17.4 10.9 0.096 13.1 2.1 3.3 1 1 2 3 3 3 1 Snapin/Pallidin Taxilin PF09728.9 gi|325967602|ref|YP_004243794.1| - 0.006 15.8 15.0 0.0091 15.2 15.0 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein Rab5-bind PF09311.11 gi|325967602|ref|YP_004243794.1| - 0.0086 15.5 7.1 0.0086 15.5 7.1 1.8 1 1 0 1 1 1 1 Rabaptin-like protein Golgin_A5 PF09787.9 gi|325967602|ref|YP_004243794.1| - 0.016 14.7 12.8 0.023 14.2 12.8 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 NPV_P10 PF05531.12 gi|325967602|ref|YP_004243794.1| - 0.016 15.7 0.1 33 5.0 0.0 3.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein TMPIT PF07851.13 gi|325967602|ref|YP_004243794.1| - 0.018 14.3 7.8 0.027 13.7 7.8 1.4 1 0 0 1 1 1 0 TMPIT-like protein RasGAP_C PF03836.15 gi|325967602|ref|YP_004243794.1| - 0.023 14.9 8.4 0.27 11.4 2.7 2.2 1 1 1 2 2 2 0 RasGAP C-terminus V_ATPase_I PF01496.19 gi|325967602|ref|YP_004243794.1| - 0.024 12.6 3.0 0.031 12.2 3.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Baculo_PEP_C PF04513.12 gi|325967602|ref|YP_004243794.1| - 0.042 13.9 2.0 9.8 6.2 0.0 2.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin PF00804.25 gi|325967602|ref|YP_004243794.1| - 0.044 13.5 10.0 0.044 13.4 4.8 2.2 1 1 2 3 3 3 0 Syntaxin Sec34 PF04136.15 gi|325967602|ref|YP_004243794.1| - 0.059 13.3 5.4 1.1 9.2 3.9 2.3 1 1 2 3 3 3 0 Sec34-like family DUF4407 PF14362.6 gi|325967602|ref|YP_004243794.1| - 0.067 12.5 3.9 0.088 12.1 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) BRE1 PF08647.11 gi|325967602|ref|YP_004243794.1| - 0.069 13.2 18.2 0.51 10.4 14.9 2.2 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase EzrA PF06160.12 gi|325967602|ref|YP_004243794.1| - 0.075 11.2 14.8 0.68 8.0 1.9 2.1 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA FUSC PF04632.12 gi|325967602|ref|YP_004243794.1| - 0.079 11.5 0.9 0.098 11.2 0.9 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family APG6_N PF17675.1 gi|325967602|ref|YP_004243794.1| - 0.09 13.3 29.0 0.55 10.8 28.5 2.3 1 1 1 2 2 2 0 Apg6 coiled-coil region Allexi_40kDa PF05549.11 gi|325967602|ref|YP_004243794.1| - 0.093 12.2 4.0 1 8.8 0.3 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein Nup88 PF10168.9 gi|325967602|ref|YP_004243794.1| - 0.093 10.5 11.6 0.13 10.1 11.6 1.1 1 0 0 1 1 1 0 Nuclear pore component Dor1 PF04124.12 gi|325967602|ref|YP_004243794.1| - 0.12 11.1 7.3 0.28 9.8 7.1 1.7 1 1 0 1 1 1 0 Dor1-like family DUF4795 PF16043.5 gi|325967602|ref|YP_004243794.1| - 0.12 11.9 15.0 1 8.9 15.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) ERM PF00769.19 gi|325967602|ref|YP_004243794.1| - 0.17 11.7 19.3 0.23 11.2 19.3 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Exonuc_VII_L PF02601.15 gi|325967602|ref|YP_004243794.1| - 0.17 11.5 7.3 0.23 11.0 7.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Ntox28 PF15605.6 gi|325967602|ref|YP_004243794.1| - 0.21 11.8 8.3 3.9 7.8 3.4 2.6 1 1 1 2 2 2 0 Bacterial toxin 28 Mod_r PF07200.13 gi|325967602|ref|YP_004243794.1| - 0.22 11.6 20.9 0.13 12.3 13.0 2.3 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein LMBR1 PF04791.16 gi|325967602|ref|YP_004243794.1| - 0.24 10.2 5.8 0.33 9.8 5.8 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Occludin_ELL PF07303.13 gi|325967602|ref|YP_004243794.1| - 0.44 11.3 12.0 1.8 9.3 4.7 2.5 1 1 1 2 2 2 0 Occludin homology domain YkyA PF10368.9 gi|325967602|ref|YP_004243794.1| - 0.5 10.0 16.0 0.7 9.5 9.4 2.0 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein KxDL PF10241.9 gi|325967602|ref|YP_004243794.1| - 0.75 10.1 8.1 0.24 11.7 2.8 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein ArAE_2_N PF10337.9 gi|325967602|ref|YP_004243794.1| - 0.8 8.7 1.9 4.4 6.2 0.1 2.0 1 1 1 2 2 2 0 Putative ER transporter, 6TM, N-terminal JIP_LZII PF16471.5 gi|325967602|ref|YP_004243794.1| - 1.2 9.4 15.6 0.19 11.9 7.8 3.1 1 1 3 4 4 4 0 JNK-interacting protein leucine zipper II KASH_CCD PF14662.6 gi|325967602|ref|YP_004243794.1| - 1.3 8.8 19.9 5.3 6.8 20.0 1.8 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH DUF16 PF01519.16 gi|325967602|ref|YP_004243794.1| - 1.4 9.4 13.3 8.8e+02 0.4 13.3 2.8 1 1 0 1 1 1 0 Protein of unknown function DUF16 Prominin PF05478.11 gi|325967602|ref|YP_004243794.1| - 1.4 6.8 7.0 1.6 6.6 4.2 1.7 1 1 1 2 2 2 0 Prominin TolA_bind_tri PF16331.5 gi|325967602|ref|YP_004243794.1| - 1.5 8.9 7.4 0.77 9.9 3.7 2.2 1 1 0 2 2 2 0 TolA binding protein trimerisation Peptidase_S46 PF10459.9 gi|325967602|ref|YP_004243794.1| - 1.8 7.1 10.6 2.4 6.7 10.6 1.1 1 0 0 1 1 1 0 Peptidase S46 DUF3461 PF11944.8 gi|325967602|ref|YP_004243794.1| - 2.4 8.3 8.7 11 6.2 0.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3461) DASH_Dad4 PF08650.10 gi|325967602|ref|YP_004243794.1| - 3.1 7.9 8.3 1.8 8.6 2.8 3.0 2 1 2 4 4 4 0 DASH complex subunit Dad4 Seryl_tRNA_N PF02403.22 gi|325967602|ref|YP_004243794.1| - 3.2 8.0 16.2 10 6.4 14.8 2.2 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Phage_GPO PF05929.11 gi|325967602|ref|YP_004243794.1| - 3.6 7.1 6.4 10 5.6 6.4 1.7 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Com_YlbF PF06133.11 gi|325967602|ref|YP_004243794.1| - 3.6 8.2 13.0 12 6.6 11.6 2.5 2 1 0 2 2 1 0 Control of competence regulator ComK, YlbF/YmcA Prefoldin_2 PF01920.20 gi|325967602|ref|YP_004243794.1| - 3.8 7.5 21.0 3.3 7.7 3.1 3.2 1 1 2 3 3 3 0 Prefoldin subunit JAKMIP_CC3 PF16034.5 gi|325967602|ref|YP_004243794.1| - 3.9 7.4 17.0 0.068 13.1 7.0 2.2 1 1 1 2 2 2 0 JAKMIP CC3 domain Jnk-SapK_ap_N PF09744.9 gi|325967602|ref|YP_004243794.1| - 4 7.7 24.1 45 4.2 24.3 2.2 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 UPF0242 PF06785.11 gi|325967602|ref|YP_004243794.1| - 4.3 7.4 21.1 9.8 6.2 21.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CREPT PF16566.5 gi|325967602|ref|YP_004243794.1| - 4.4 7.5 12.3 1.2 9.3 1.8 2.2 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour DUF745 PF05335.13 gi|325967602|ref|YP_004243794.1| - 4.5 6.9 7.3 9.9 5.8 7.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF745) DUF5347 PF17282.2 gi|325967602|ref|YP_004243794.1| - 4.8 7.5 7.5 9.4 6.6 1.2 2.8 1 1 1 2 2 2 0 Family of unknown function (DUF5347) COG2 PF06148.11 gi|325967602|ref|YP_004243794.1| - 5 7.2 10.4 5.6 7.1 3.5 3.0 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 HMMR_N PF15905.5 gi|325967602|ref|YP_004243794.1| - 5 6.5 17.1 7.4 5.9 17.1 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Cytochrom_C_2 PF01322.20 gi|325967602|ref|YP_004243794.1| - 5.4 7.9 8.5 1.4 9.9 3.0 2.2 1 1 1 2 2 2 0 Cytochrome C' OmpH PF03938.14 gi|325967602|ref|YP_004243794.1| - 6.4 7.1 15.8 29 5.0 16.0 1.8 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Mito_fiss_reg PF05308.11 gi|325967602|ref|YP_004243794.1| - 7 6.7 7.7 4.4 7.3 5.8 1.6 1 1 1 2 2 2 0 Mitochondrial fission regulator zf-C4H2 PF10146.9 gi|325967602|ref|YP_004243794.1| - 7.8 6.7 12.2 14 5.9 12.2 1.4 1 1 0 1 1 1 0 Zinc finger-containing protein Fib_alpha PF08702.10 gi|325967602|ref|YP_004243794.1| - 8 6.6 8.6 14 5.8 3.5 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4081 PF13312.6 gi|325967602|ref|YP_004243794.1| - 8.9 6.6 10.3 22 5.3 0.4 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4081) DUF4200 PF13863.6 gi|325967602|ref|YP_004243794.1| - 9.2 6.7 23.3 7.1 7.1 20.6 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Phage_holin_3_6 PF07332.11 gi|325967603|ref|YP_004243795.1| - 0.00049 20.1 0.4 0.00057 19.9 0.4 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III AgrB PF04647.15 gi|325967603|ref|YP_004243795.1| - 0.01 15.1 2.2 0.013 14.9 2.2 1.1 1 0 0 1 1 1 0 Accessory gene regulator B DUF4131 PF13567.6 gi|325967603|ref|YP_004243795.1| - 0.011 15.4 0.1 0.012 15.3 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Halogen_Hydrol PF10112.9 gi|325967603|ref|YP_004243795.1| - 0.015 15.3 0.2 0.018 15.1 0.2 1.1 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein Wzy_C PF04932.15 gi|325967603|ref|YP_004243795.1| - 0.015 14.9 0.2 0.018 14.7 0.2 1.1 1 0 0 1 1 1 0 O-Antigen ligase H_PPase PF03030.16 gi|325967603|ref|YP_004243795.1| - 0.025 13.2 0.0 0.026 13.1 0.0 1.0 1 0 0 1 1 1 0 Inorganic H+ pyrophosphatase SieB PF14163.6 gi|325967603|ref|YP_004243795.1| - 0.031 13.8 0.8 0.056 12.9 0.8 1.4 1 1 0 1 1 1 0 Super-infection exclusion protein B DUF2207 PF09972.9 gi|325967603|ref|YP_004243795.1| - 0.033 12.9 0.4 0.035 12.9 0.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4307 PF14155.6 gi|325967603|ref|YP_004243795.1| - 0.087 12.7 1.1 0.52 10.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF2614 PF11023.8 gi|325967603|ref|YP_004243795.1| - 0.15 12.2 1.5 0.16 12.1 1.5 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain GDP_Man_Dehyd PF16363.5 gi|325967604|ref|YP_004243796.1| - 5e-71 239.8 0.0 5.7e-71 239.6 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|325967604|ref|YP_004243796.1| - 1.1e-63 214.9 0.0 1.4e-63 214.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|325967604|ref|YP_004243796.1| - 8.1e-22 77.6 0.0 9.6e-22 77.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|325967604|ref|YP_004243796.1| - 8.6e-16 57.8 0.0 1.2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|325967604|ref|YP_004243796.1| - 2.2e-13 50.0 0.1 6.4e-12 45.2 0.1 2.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|325967604|ref|YP_004243796.1| - 2.1e-12 46.8 0.2 3.9e-11 42.6 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|325967604|ref|YP_004243796.1| - 0.00021 21.3 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|325967604|ref|YP_004243796.1| - 0.00031 20.2 0.0 0.058 12.8 0.0 2.5 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.13 gi|325967604|ref|YP_004243796.1| - 0.035 13.7 0.0 0.25 10.9 0.0 2.3 2 1 1 3 3 3 0 NmrA-like family HGD-D PF06050.13 gi|325967604|ref|YP_004243796.1| - 0.11 12.2 0.0 0.36 10.5 0.0 1.8 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component IMS PF00817.20 gi|325967604|ref|YP_004243796.1| - 0.13 12.3 0.0 5.3 7.0 0.0 2.5 2 1 0 2 2 2 0 impB/mucB/samB family NTP_transferase PF00483.23 gi|325967605|ref|YP_004243797.1| - 8.2e-43 146.8 0.0 9.7e-43 146.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|325967605|ref|YP_004243797.1| - 1.1e-10 42.1 0.0 1.4e-10 41.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Bactofilin PF04519.13 gi|325967605|ref|YP_004243797.1| - 7.6e-05 22.9 3.1 0.00016 21.9 3.1 1.4 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|325967605|ref|YP_004243797.1| - 0.022 14.5 11.4 0.12 12.1 1.1 4.3 2 2 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) RNase_Zc3h12a PF11977.8 gi|325967605|ref|YP_004243797.1| - 0.11 12.3 0.0 3.1 7.6 0.0 2.2 2 0 0 2 2 2 0 Zc3h12a-like Ribonuclease NYN domain CTP_transf_3 PF02348.19 gi|325967605|ref|YP_004243797.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase Polysacc_synt PF01943.17 gi|325967606|ref|YP_004243798.1| - 0.00043 19.8 34.6 0.00043 19.8 34.6 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Thy1 PF02511.15 gi|325967607|ref|YP_004243799.1| - 1.7e-39 135.6 0.0 2e-39 135.3 0.0 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein ABC_tran PF00005.27 gi|325967608|ref|YP_004243800.1| - 4.4e-33 114.7 0.0 5.9e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|325967608|ref|YP_004243800.1| - 1.6e-19 70.2 0.1 3.1e-19 69.3 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|325967608|ref|YP_004243800.1| - 1.1e-07 32.0 0.8 0.00024 21.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|325967608|ref|YP_004243800.1| - 2.3e-05 24.7 0.1 5.4e-05 23.5 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325967608|ref|YP_004243800.1| - 0.0005 20.5 0.1 0.001 19.5 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|325967608|ref|YP_004243800.1| - 0.0045 16.5 0.4 0.053 12.9 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|325967608|ref|YP_004243800.1| - 0.0056 16.9 0.2 0.095 13.0 0.1 2.7 1 1 1 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|325967608|ref|YP_004243800.1| - 0.0096 15.6 0.1 0.018 14.8 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|325967608|ref|YP_004243800.1| - 0.01 14.5 0.0 1.7 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|325967608|ref|YP_004243800.1| - 0.015 15.3 0.1 0.34 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|325967608|ref|YP_004243800.1| - 0.045 13.3 0.2 8.5 5.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|325967608|ref|YP_004243800.1| - 0.19 11.9 0.0 0.51 10.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|325967608|ref|YP_004243800.1| - 0.26 11.0 0.0 0.59 9.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|325967609|ref|YP_004243801.1| - 2e-26 93.1 0.0 2.9e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|325967609|ref|YP_004243801.1| - 3.1e-17 62.8 0.0 5.4e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|325967609|ref|YP_004243801.1| - 6e-08 32.8 0.5 0.0021 17.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325967609|ref|YP_004243801.1| - 7.3e-06 25.6 0.7 4.4e-05 23.0 0.7 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|325967609|ref|YP_004243801.1| - 2.1e-05 24.2 0.1 4.2e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|325967609|ref|YP_004243801.1| - 0.00051 20.3 0.2 0.0038 17.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|325967609|ref|YP_004243801.1| - 0.0012 19.4 0.0 0.0017 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|325967609|ref|YP_004243801.1| - 0.0028 17.1 0.2 0.31 10.4 0.2 2.2 2 0 0 2 2 2 1 Bacterial TniB protein PRK PF00485.18 gi|325967609|ref|YP_004243801.1| - 0.0063 16.3 0.1 0.012 15.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|325967609|ref|YP_004243801.1| - 0.011 16.2 0.0 0.021 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Cytidylate_kin2 PF13189.6 gi|325967609|ref|YP_004243801.1| - 0.012 15.7 0.0 0.018 15.2 0.0 1.2 1 0 0 1 1 1 0 Cytidylate kinase-like family MMR_HSR1 PF01926.23 gi|325967609|ref|YP_004243801.1| - 0.013 15.6 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|325967609|ref|YP_004243801.1| - 0.019 15.5 0.0 0.058 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|325967609|ref|YP_004243801.1| - 0.047 13.4 0.5 1.8 8.3 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|325967609|ref|YP_004243801.1| - 0.069 12.3 0.1 0.13 11.4 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|325967609|ref|YP_004243801.1| - 0.072 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|325967609|ref|YP_004243801.1| - 0.079 11.6 0.9 3.5 6.2 0.2 2.0 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|325967609|ref|YP_004243801.1| - 0.081 12.2 0.7 0.38 10.1 0.1 2.1 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.6 gi|325967609|ref|YP_004243801.1| - 0.099 12.8 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|325967609|ref|YP_004243801.1| - 0.11 12.2 0.5 0.64 9.7 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|325967609|ref|YP_004243801.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.22 gi|325967610|ref|YP_004243802.1| - 5e-27 94.8 18.3 5e-27 94.8 18.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|325967611|ref|YP_004243803.1| - 2.7e-38 131.6 14.1 2.7e-38 131.6 14.1 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component AMP-binding PF00501.28 gi|325967612|ref|YP_004243804.1| - 6e-95 318.3 0.0 7.2e-95 318.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325967612|ref|YP_004243804.1| - 1.2e-28 99.9 1.4 7.1e-28 97.4 0.4 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|325967612|ref|YP_004243804.1| - 2.6e-19 68.9 0.6 2.6e-19 68.9 0.6 1.9 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus ADPrib_exo_Tox PF03496.14 gi|325967612|ref|YP_004243804.1| - 0.15 11.4 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme DASH_Dad1 PF08649.10 gi|325967613|ref|YP_004243805.1| - 0.13 12.5 1.4 0.29 11.4 0.1 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad1 TusA PF01206.17 gi|325967614|ref|YP_004243806.1| - 2.5e-07 30.4 0.0 2.7e-07 30.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Peptidase_S24 PF00717.23 gi|325967614|ref|YP_004243806.1| - 0.0012 18.7 0.0 0.0015 18.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase S24-like Peptidase_M1 PF01433.20 gi|325967615|ref|YP_004243807.1| - 2.2e-53 181.1 0.4 3.8e-53 180.3 0.4 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|325967615|ref|YP_004243807.1| - 8.3e-34 115.8 3.2 1.5e-14 54.1 0.1 5.1 2 2 4 6 6 6 4 HEAT repeats Peptidase_M1_N PF17900.1 gi|325967615|ref|YP_004243807.1| - 2.4e-15 57.2 0.0 4.2e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|325967615|ref|YP_004243807.1| - 2.3e-10 40.1 14.4 0.00023 21.5 0.5 6.8 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|325967615|ref|YP_004243807.1| - 1.9e-09 37.0 2.0 1.1 9.7 0.0 5.9 6 0 0 6 6 6 2 HEAT repeat Vitellogenin_N PF01347.22 gi|325967615|ref|YP_004243807.1| - 3.1e-06 25.9 0.0 0.00049 18.6 0.0 2.5 2 1 1 3 3 3 2 Lipoprotein amino terminal region HEAT_EZ PF13513.6 gi|325967615|ref|YP_004243807.1| - 0.023 15.2 2.6 0.31 11.6 1.2 3.5 3 1 1 4 4 4 0 HEAT-like repeat TAF6_C PF07571.13 gi|325967615|ref|YP_004243807.1| - 0.058 13.7 0.0 0.54 10.6 0.0 2.7 1 1 0 1 1 1 0 TAF6 C-terminal HEAT repeat domain ERAP1_C PF11838.8 gi|325967615|ref|YP_004243807.1| - 0.11 12.1 1.1 0.34 10.4 0.0 2.3 2 1 0 3 3 3 0 ERAP1-like C-terminal domain Peptidase_M61 PF05299.12 gi|325967615|ref|YP_004243807.1| - 1.3 9.4 4.0 12 6.3 4.0 2.5 1 1 0 1 1 1 0 M61 glycyl aminopeptidase BMFP PF04380.13 gi|325967615|ref|YP_004243807.1| - 1.5 9.3 4.5 2.8 8.5 3.4 2.0 2 0 0 2 2 2 0 Membrane fusogenic activity HalX PF08663.10 gi|325967615|ref|YP_004243807.1| - 6.1 7.2 9.0 0.74 10.2 3.5 2.4 2 1 1 3 3 3 0 HalX domain MTS PF05175.14 gi|325967616|ref|YP_004243808.1| - 4.2e-40 137.1 0.0 4.9e-40 136.8 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|325967616|ref|YP_004243808.1| - 1.5e-13 50.8 0.2 1.8e-13 50.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|325967616|ref|YP_004243808.1| - 1.4e-12 47.7 0.0 1.7e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325967616|ref|YP_004243808.1| - 5.4e-08 33.4 0.0 8.5e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|325967616|ref|YP_004243808.1| - 1.1e-06 28.5 0.1 1.5e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_12 PF08242.12 gi|325967616|ref|YP_004243808.1| - 4.8e-06 27.2 0.0 7.8e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|325967616|ref|YP_004243808.1| - 8.3e-06 25.7 0.1 1e-05 25.4 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|325967616|ref|YP_004243808.1| - 1.6e-05 24.8 0.0 2.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|325967616|ref|YP_004243808.1| - 2.1e-05 24.5 0.1 2.9e-05 24.0 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|325967616|ref|YP_004243808.1| - 9.9e-05 22.9 0.0 0.00017 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|325967616|ref|YP_004243808.1| - 0.00091 18.3 0.1 0.0017 17.4 0.1 1.5 1 1 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase PCMT PF01135.19 gi|325967616|ref|YP_004243808.1| - 0.002 17.9 0.0 0.0025 17.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|325967616|ref|YP_004243808.1| - 0.023 14.7 0.0 0.032 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|325967616|ref|YP_004243808.1| - 0.072 12.4 0.2 0.11 11.8 0.2 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family TRM PF02005.16 gi|325967616|ref|YP_004243808.1| - 0.072 12.2 0.1 0.089 11.9 0.1 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase N6_Mtase PF02384.16 gi|325967616|ref|YP_004243808.1| - 0.083 12.1 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_4 PF02390.17 gi|325967616|ref|YP_004243808.1| - 0.11 12.0 0.3 0.18 11.2 0.1 1.5 2 0 0 2 2 2 0 Putative methyltransferase TehB PF03848.14 gi|325967616|ref|YP_004243808.1| - 0.11 11.9 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltr_RsmB-F PF01189.17 gi|325967616|ref|YP_004243808.1| - 0.11 12.1 0.1 0.18 11.4 0.1 1.4 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F EamA PF00892.20 gi|325967617|ref|YP_004243809.1| - 3.9e-32 111.3 42.9 1.4e-16 60.9 15.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF4538 PF15061.6 gi|325967617|ref|YP_004243809.1| - 3.4 7.5 5.7 4.2 7.2 0.2 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4538) Ribosomal_L26 PF16906.5 gi|325967618|ref|YP_004243810.1| - 1.1e-29 102.7 0.4 2e-29 101.9 0.4 1.4 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|325967618|ref|YP_004243810.1| - 4.1e-07 29.7 1.6 4.1e-07 29.7 1.6 1.9 2 0 0 2 2 2 1 KOW motif Ribosomal_S4e PF00900.20 gi|325967619|ref|YP_004243811.1| - 3.9e-27 93.9 0.1 9.4e-27 92.7 0.0 1.7 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|325967619|ref|YP_004243811.1| - 4.1e-13 49.2 4.3 6.6e-13 48.5 4.3 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|325967619|ref|YP_004243811.1| - 2.7e-08 33.4 0.9 6e-08 32.3 0.2 2.0 2 0 0 2 2 2 1 S4 domain KOW PF00467.29 gi|325967619|ref|YP_004243811.1| - 0.027 14.4 0.6 0.065 13.2 0.2 1.8 2 0 0 2 2 2 0 KOW motif MAF_flag10 PF01973.18 gi|325967620|ref|YP_004243812.1| - 4.3e-07 29.8 0.0 6.7e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 SHMT PF00464.19 gi|325967621|ref|YP_004243813.1| - 4e-76 256.2 0.0 5.1e-76 255.8 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|325967621|ref|YP_004243813.1| - 7e-10 38.6 0.0 1.4e-09 37.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|325967621|ref|YP_004243813.1| - 6.4e-08 32.2 0.0 1.3e-07 31.2 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|325967621|ref|YP_004243813.1| - 3.4e-05 23.0 0.0 5.4e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|325967621|ref|YP_004243813.1| - 0.0056 15.3 0.4 0.057 11.9 0.1 2.1 1 1 1 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|325967621|ref|YP_004243813.1| - 0.028 13.7 0.0 0.17 11.2 0.0 2.0 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.13 gi|325967621|ref|YP_004243813.1| - 0.044 12.8 0.0 0.14 11.1 0.1 1.8 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase DNA_ligase_A_M PF01068.21 gi|325967622|ref|YP_004243814.1| - 2.2e-66 223.4 0.1 4e-66 222.5 0.1 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|325967622|ref|YP_004243814.1| - 5.7e-39 134.2 0.0 2.1e-38 132.4 0.0 1.9 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|325967622|ref|YP_004243814.1| - 1.9e-21 76.5 0.0 2.1e-20 73.1 0.0 2.5 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|325967622|ref|YP_004243814.1| - 1.6e-08 35.0 0.2 2.7e-08 34.3 0.2 1.4 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|325967622|ref|YP_004243814.1| - 0.038 14.0 0.9 0.17 11.9 0.0 2.6 4 0 0 4 4 4 0 DNA ligase OB-like domain PfkB PF00294.24 gi|325967624|ref|YP_004243816.1| - 1.5e-49 169.0 0.1 1.8e-49 168.7 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|325967624|ref|YP_004243816.1| - 0.032 13.6 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase MoCF_biosynth PF00994.24 gi|325967624|ref|YP_004243816.1| - 0.091 12.4 0.5 0.17 11.5 0.3 1.4 1 1 0 1 1 1 0 Probable molybdopterin binding domain HTH_5 PF01022.20 gi|325967625|ref|YP_004243817.1| - 0.083 12.8 0.1 0.75 9.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family NTP_transferase PF00483.23 gi|325967626|ref|YP_004243818.1| - 3.7e-22 79.1 0.0 4.3e-22 78.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|325967626|ref|YP_004243818.1| - 0.00026 21.4 0.0 0.00029 21.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transf_4 PF13562.6 gi|325967626|ref|YP_004243818.1| - 0.0018 18.5 0.2 0.0032 17.7 0.0 1.5 2 0 0 2 2 2 1 Sugar nucleotidyl transferase IspD PF01128.19 gi|325967626|ref|YP_004243818.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CdvA PF18822.1 gi|325967627|ref|YP_004243819.1| - 4.6e-06 26.5 13.9 0.0062 16.4 6.6 2.6 1 1 0 2 2 2 2 CdvA-like coiled-coil domain Phage_int_SAM_2 PF12834.7 gi|325967627|ref|YP_004243819.1| - 0.017 15.8 1.7 0.16 12.7 0.6 2.3 1 1 1 2 2 2 0 Phage integrase, N-terminal SHOCT PF09851.9 gi|325967627|ref|YP_004243819.1| - 0.02 14.6 11.3 0.6 9.9 3.2 3.5 3 0 0 3 3 3 0 Short C-terminal domain Spectrin PF00435.21 gi|325967627|ref|YP_004243819.1| - 0.025 15.1 9.8 0.11 13.0 2.0 2.4 1 1 1 2 2 2 0 Spectrin repeat NPV_P10 PF05531.12 gi|325967627|ref|YP_004243819.1| - 0.028 14.9 0.7 0.028 14.9 0.7 3.2 1 1 3 4 4 4 0 Nucleopolyhedrovirus P10 protein Cep57_MT_bd PF06657.13 gi|325967627|ref|YP_004243819.1| - 0.032 14.7 2.7 5.8 7.4 0.2 2.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF922 PF06037.11 gi|325967627|ref|YP_004243819.1| - 0.032 14.0 0.8 0.032 14.0 0.8 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF922) DUF948 PF06103.11 gi|325967627|ref|YP_004243819.1| - 0.12 12.7 3.3 9.8 6.5 0.1 2.8 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4238 PF14022.6 gi|325967627|ref|YP_004243819.1| - 0.27 10.7 4.1 0.35 10.4 4.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4238) Baculo_PEP_C PF04513.12 gi|325967627|ref|YP_004243819.1| - 0.3 11.1 3.4 1.3 9.0 0.2 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin_2 PF14523.6 gi|325967627|ref|YP_004243819.1| - 0.37 11.2 15.5 1.4 9.3 3.8 2.8 1 1 1 2 2 2 0 Syntaxin-like protein WXG100 PF06013.12 gi|325967627|ref|YP_004243819.1| - 0.42 10.9 7.1 1.5 9.1 0.1 3.1 3 0 0 3 3 3 0 Proteins of 100 residues with WXG FliD_C PF07195.12 gi|325967627|ref|YP_004243819.1| - 0.47 9.8 11.5 0.11 11.9 0.9 2.4 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus CLZ PF16526.5 gi|325967627|ref|YP_004243819.1| - 0.56 10.6 7.4 4 7.9 2.5 3.5 2 2 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FAM76 PF16046.5 gi|325967627|ref|YP_004243819.1| - 0.82 9.0 6.9 1.2 8.5 6.9 1.2 1 0 0 1 1 1 0 FAM76 protein ApoO PF09769.9 gi|325967627|ref|YP_004243819.1| - 0.83 9.6 4.0 4.8 7.2 0.1 2.7 2 1 0 2 2 2 0 Apolipoprotein O ING PF12998.7 gi|325967627|ref|YP_004243819.1| - 0.92 10.1 10.1 0.054 14.1 2.6 2.5 2 1 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding ZnuA PF01297.17 gi|325967627|ref|YP_004243819.1| - 1.5 8.2 7.4 0.23 10.9 0.7 2.5 1 1 3 4 4 4 0 Zinc-uptake complex component A periplasmic DUF1943 PF09172.11 gi|325967627|ref|YP_004243819.1| - 1.8 7.7 8.8 0.12 11.5 3.6 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1943) DUF883 PF05957.13 gi|325967627|ref|YP_004243819.1| - 2 9.1 5.8 1.8 9.2 0.2 3.3 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) GrpE PF01025.19 gi|325967627|ref|YP_004243819.1| - 3 7.5 13.0 0.53 9.9 1.1 3.1 2 2 1 3 3 3 0 GrpE GvpG PF05120.12 gi|325967627|ref|YP_004243819.1| - 3 7.9 7.9 5.4 7.1 0.1 2.7 3 0 0 3 3 2 0 Gas vesicle protein G Laminin_II PF06009.12 gi|325967627|ref|YP_004243819.1| - 3.4 7.7 10.8 1.2 9.2 0.8 2.8 2 1 1 3 3 3 0 Laminin Domain II FliJ PF02050.16 gi|325967627|ref|YP_004243819.1| - 6.2 7.1 16.8 2.9 8.1 6.1 3.1 2 2 0 2 2 2 0 Flagellar FliJ protein DUF1366 PF07104.11 gi|325967627|ref|YP_004243819.1| - 7.3 6.3 8.9 0.82 9.4 1.7 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1366) COG2 PF06148.11 gi|325967627|ref|YP_004243819.1| - 9.7 6.3 8.2 2.7 8.1 1.2 2.7 1 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 CdvA PF18822.1 gi|325967628|ref|YP_004243820.1| - 2.3e-06 27.4 8.2 0.0027 17.5 6.5 3.0 1 1 1 2 2 2 2 CdvA-like coiled-coil domain DUF948 PF06103.11 gi|325967628|ref|YP_004243820.1| - 1e-05 25.7 4.9 0.025 14.8 0.2 3.2 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF948) GvpG PF05120.12 gi|325967628|ref|YP_004243820.1| - 0.0078 16.2 2.6 0.009 16.0 0.5 2.1 3 0 0 3 3 3 1 Gas vesicle protein G DUF2524 PF10732.9 gi|325967628|ref|YP_004243820.1| - 0.034 14.4 0.6 2.3 8.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2524) T3SSipB PF16535.5 gi|325967628|ref|YP_004243820.1| - 0.037 14.5 0.2 2.8 8.4 0.1 2.4 2 1 0 2 2 2 0 Type III cell invasion protein SipB Nas2_N PF18265.1 gi|325967628|ref|YP_004243820.1| - 0.09 12.7 0.6 0.31 11.0 0.3 2.1 2 0 0 2 2 2 0 Nas2 N_terminal domain DUF4363 PF14276.6 gi|325967628|ref|YP_004243820.1| - 0.14 12.3 7.2 1.7 8.8 5.1 3.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4363) SLATT_6 PF18169.1 gi|325967628|ref|YP_004243820.1| - 0.14 11.7 0.9 0.58 9.7 0.1 2.0 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 TSNAXIP1_N PF15739.5 gi|325967628|ref|YP_004243820.1| - 0.16 12.4 3.8 0.24 11.8 0.9 2.3 1 1 2 3 3 3 0 Translin-associated factor X-interacting N-terminus Syntaxin-6_N PF09177.11 gi|325967628|ref|YP_004243820.1| - 0.17 12.5 6.7 11 6.7 6.7 2.9 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Imm3 PF14425.6 gi|325967628|ref|YP_004243820.1| - 0.17 11.9 4.7 0.38 10.8 3.4 2.2 1 1 1 2 2 2 0 Immunity protein Imm3 Fib_alpha PF08702.10 gi|325967628|ref|YP_004243820.1| - 0.18 12.0 5.6 2.4 8.4 0.5 2.6 2 2 0 2 2 2 0 Fibrinogen alpha/beta chain family YkyA PF10368.9 gi|325967628|ref|YP_004243820.1| - 0.24 11.1 9.8 2.5 7.8 4.7 2.6 2 1 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF2443 PF10398.9 gi|325967628|ref|YP_004243820.1| - 0.63 10.1 9.3 1.5 8.9 0.9 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF2443) APG6_N PF17675.1 gi|325967628|ref|YP_004243820.1| - 0.74 10.3 4.8 2.8 8.5 0.3 2.6 2 1 0 3 3 3 0 Apg6 coiled-coil region Osmo_CC PF08946.10 gi|325967628|ref|YP_004243820.1| - 1.4 9.2 6.4 9 6.6 0.1 3.6 4 0 0 4 4 4 0 Osmosensory transporter coiled coil FlaC_arch PF05377.11 gi|325967628|ref|YP_004243820.1| - 2.1 8.8 10.5 12 6.4 1.2 4.3 3 1 2 5 5 4 0 Flagella accessory protein C (FlaC) SHOCT PF09851.9 gi|325967628|ref|YP_004243820.1| - 4.8 7.0 7.5 0.64 9.8 0.6 3.2 4 0 0 4 4 4 0 Short C-terminal domain LysE PF01810.18 gi|325967629|ref|YP_004243821.1| - 0.0069 15.9 1.3 0.0069 15.9 1.3 2.5 3 0 0 3 3 3 1 LysE type translocator Cation_efflux PF01545.21 gi|325967630|ref|YP_004243822.1| - 8.4e-39 133.4 16.7 1.1e-38 132.9 16.7 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|325967630|ref|YP_004243822.1| - 2.8e-36 123.5 20.4 4.4e-21 74.8 3.5 3.2 2 1 1 3 3 3 3 Dimerisation domain of Zinc Transporter HisG_C PF08029.11 gi|325967630|ref|YP_004243822.1| - 0.048 13.8 0.3 0.19 11.9 0.3 2.1 1 0 0 1 1 1 0 HisG, C-terminal domain DUF4897 PF16238.5 gi|325967630|ref|YP_004243822.1| - 0.058 13.2 1.6 0.16 11.8 1.6 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) AMP-binding_C_2 PF14535.6 gi|325967630|ref|YP_004243822.1| - 0.066 13.5 0.2 0.066 13.5 0.2 2.5 3 0 0 3 3 3 0 AMP-binding enzyme C-terminal domain ACT_4 PF13291.6 gi|325967630|ref|YP_004243822.1| - 1.3 9.7 9.9 10 6.8 0.2 3.5 3 0 0 3 3 3 0 ACT domain Rtt106_N PF18215.1 gi|325967630|ref|YP_004243822.1| - 2.6 7.9 7.0 3.2 7.6 0.1 3.9 5 0 0 5 5 5 0 Histone chaperone Rtt106 N-terminal domain PAP2 PF01569.21 gi|325967630|ref|YP_004243822.1| - 7.8 6.3 8.3 3.6 7.3 0.5 2.8 3 0 0 3 3 3 0 PAP2 superfamily DUF2067 PF09840.9 gi|325967631|ref|YP_004243823.1| - 2.4e-44 151.1 3.5 2.8e-44 150.9 3.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) ARPC4 PF05856.12 gi|325967631|ref|YP_004243823.1| - 0.052 13.2 1.0 0.25 10.9 0.8 2.1 1 1 1 2 2 2 0 ARP2/3 complex 20 kDa subunit (ARPC4) Glycos_transf_2 PF00535.26 gi|325967632|ref|YP_004243824.1| - 5.5e-19 68.6 0.1 1e-18 67.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|325967632|ref|YP_004243824.1| - 4.9e-17 62.5 12.2 4.9e-17 62.5 12.2 3.0 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|325967632|ref|YP_004243824.1| - 3.4e-13 50.0 0.0 4.4e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|325967632|ref|YP_004243824.1| - 7.1e-10 38.6 0.0 1.2e-09 37.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|325967632|ref|YP_004243824.1| - 0.00035 20.2 0.0 0.0006 19.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Anp1 PF03452.14 gi|325967632|ref|YP_004243824.1| - 0.13 11.6 0.1 0.2 11.0 0.1 1.2 1 0 0 1 1 1 0 Anp1 FAD_binding_3 PF01494.19 gi|325967633|ref|YP_004243825.1| - 1.6e-16 60.5 0.0 3e-15 56.3 0.0 2.3 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.14 gi|325967633|ref|YP_004243825.1| - 4.1e-08 32.5 0.0 0.00024 20.1 0.0 2.9 2 1 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.7 gi|325967633|ref|YP_004243825.1| - 3.6e-07 29.9 0.2 1.3e-06 28.1 0.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|325967633|ref|YP_004243825.1| - 2.7e-06 26.4 0.1 4e-06 25.8 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|325967633|ref|YP_004243825.1| - 2.8e-06 26.6 0.0 0.0018 17.4 0.0 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|325967633|ref|YP_004243825.1| - 6.1e-06 26.0 0.2 0.00066 19.4 0.2 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|325967633|ref|YP_004243825.1| - 2.6e-05 24.4 0.1 9.1e-05 22.6 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|325967633|ref|YP_004243825.1| - 3.3e-05 23.2 0.1 7.4e-05 22.0 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|325967633|ref|YP_004243825.1| - 6.2e-05 22.2 0.1 9.3e-05 21.7 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|325967633|ref|YP_004243825.1| - 9.4e-05 21.8 0.1 0.00013 21.3 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|325967633|ref|YP_004243825.1| - 0.00022 20.6 0.0 0.00037 19.8 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|325967633|ref|YP_004243825.1| - 0.0014 17.9 0.2 0.005 16.1 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325967633|ref|YP_004243825.1| - 0.0072 16.9 0.1 0.018 15.6 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|325967633|ref|YP_004243825.1| - 0.011 15.0 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|325967633|ref|YP_004243825.1| - 0.029 14.9 0.0 0.057 13.9 0.0 1.5 1 1 0 1 1 1 0 XdhC Rossmann domain TRAM PF01938.20 gi|325967634|ref|YP_004243826.1| - 1.5e-11 44.1 0.4 2e-11 43.7 0.4 1.1 1 0 0 1 1 1 1 TRAM domain IF3_C PF00707.22 gi|325967634|ref|YP_004243826.1| - 0.0046 16.9 0.1 0.0046 16.9 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain CSD2 PF17876.1 gi|325967634|ref|YP_004243826.1| - 0.018 15.2 0.1 0.022 14.9 0.1 1.2 1 0 0 1 1 1 0 Cold shock domain Metallophos PF00149.28 gi|325967635|ref|YP_004243827.1| - 3.4e-31 109.4 0.5 4.4e-31 109.0 0.5 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|325967635|ref|YP_004243827.1| - 0.0021 18.2 0.0 0.0031 17.7 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CDtoxinA PF03498.14 gi|325967636|ref|YP_004243828.1| - 0.13 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Cytolethal distending toxin A/C domain T2SSE PF00437.20 gi|325967637|ref|YP_004243829.1| - 3.7e-05 22.9 0.0 5.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA PF00004.29 gi|325967637|ref|YP_004243829.1| - 9.8e-05 22.8 0.1 0.00017 22.0 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|325967637|ref|YP_004243829.1| - 0.0002 21.7 0.7 0.0038 17.5 0.1 2.4 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|325967637|ref|YP_004243829.1| - 0.00036 20.5 0.0 0.00058 19.9 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_7 PF12775.7 gi|325967637|ref|YP_004243829.1| - 0.001 18.6 0.0 0.0017 17.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|325967637|ref|YP_004243829.1| - 0.0011 19.4 0.9 0.015 15.7 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|325967637|ref|YP_004243829.1| - 0.0019 17.8 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|325967637|ref|YP_004243829.1| - 0.002 18.2 0.2 0.057 13.5 0.2 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ResIII PF04851.15 gi|325967637|ref|YP_004243829.1| - 0.0035 17.4 0.0 0.0056 16.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|325967637|ref|YP_004243829.1| - 0.0036 17.0 0.1 0.0085 15.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|325967637|ref|YP_004243829.1| - 0.0038 17.8 0.2 0.0087 16.6 0.2 1.5 1 0 0 1 1 1 1 ABC transporter DEAD PF00270.29 gi|325967637|ref|YP_004243829.1| - 0.0041 16.9 0.1 0.0066 16.2 0.1 1.7 1 1 0 1 1 1 1 DEAD/DEAH box helicase NACHT PF05729.12 gi|325967637|ref|YP_004243829.1| - 0.0047 16.9 0.3 0.02 14.8 0.0 1.9 2 0 0 2 2 2 1 NACHT domain NTPase_1 PF03266.15 gi|325967637|ref|YP_004243829.1| - 0.0058 16.5 0.3 0.025 14.5 0.1 2.0 1 1 1 2 2 2 1 NTPase AAA_30 PF13604.6 gi|325967637|ref|YP_004243829.1| - 0.0076 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|325967637|ref|YP_004243829.1| - 0.011 16.1 0.3 0.019 15.3 0.2 1.5 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|325967637|ref|YP_004243829.1| - 0.011 14.7 0.1 0.017 14.1 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|325967637|ref|YP_004243829.1| - 0.015 14.7 0.1 0.025 13.9 0.1 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|325967637|ref|YP_004243829.1| - 0.02 15.4 0.1 0.036 14.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|325967637|ref|YP_004243829.1| - 0.029 14.2 0.0 0.037 13.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|325967637|ref|YP_004243829.1| - 0.031 14.3 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF853 PF05872.12 gi|325967637|ref|YP_004243829.1| - 0.031 12.9 0.0 0.038 12.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF853) Sigma54_activat PF00158.26 gi|325967637|ref|YP_004243829.1| - 0.032 13.9 0.0 0.05 13.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Rad17 PF03215.15 gi|325967637|ref|YP_004243829.1| - 0.039 13.9 0.2 0.63 9.9 0.0 2.1 1 1 0 2 2 2 0 Rad17 P-loop domain ATP_bind_1 PF03029.17 gi|325967637|ref|YP_004243829.1| - 0.043 13.6 0.1 0.074 12.8 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Pox_A32 PF04665.12 gi|325967637|ref|YP_004243829.1| - 0.047 13.1 0.1 0.094 12.2 0.1 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein IstB_IS21 PF01695.17 gi|325967637|ref|YP_004243829.1| - 0.051 13.3 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|325967637|ref|YP_004243829.1| - 0.094 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain DLIC PF05783.11 gi|325967637|ref|YP_004243829.1| - 0.099 11.5 0.2 0.085 11.7 0.2 1.2 1 1 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|325967637|ref|YP_004243829.1| - 0.11 13.1 0.6 1.4 9.5 0.3 2.5 2 1 0 2 2 2 0 AAA domain MobB PF03205.14 gi|325967637|ref|YP_004243829.1| - 0.12 12.3 0.1 0.2 11.6 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.9 gi|325967637|ref|YP_004243829.1| - 0.16 11.1 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Flavin_Reduct PF01613.18 gi|325967638|ref|YP_004243830.1| - 2.9e-19 69.6 0.0 3.6e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain GFO_IDH_MocA PF01408.22 gi|325967639|ref|YP_004243831.1| - 4.9e-18 66.1 0.0 7.9e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|325967639|ref|YP_004243831.1| - 3.2e-05 23.9 0.0 5.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain COXG PF06240.13 gi|325967640|ref|YP_004243832.1| - 4.8e-16 58.8 0.0 5.9e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|325967640|ref|YP_004243832.1| - 0.0047 17.2 0.0 0.0057 16.9 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DAO PF01266.24 gi|325967641|ref|YP_004243833.1| - 8.9e-45 153.8 1.3 1e-44 153.6 1.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|325967641|ref|YP_004243833.1| - 7.7e-06 25.5 9.3 0.00014 21.4 9.3 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|325967641|ref|YP_004243833.1| - 0.0003 20.1 1.6 0.0023 17.2 1.6 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|325967641|ref|YP_004243833.1| - 0.00053 19.3 0.3 0.00053 19.3 0.3 2.1 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|325967641|ref|YP_004243833.1| - 0.0022 17.2 1.8 0.0037 16.4 1.8 1.5 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|325967641|ref|YP_004243833.1| - 0.004 15.9 2.0 0.0051 15.6 1.4 1.4 1 1 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|325967641|ref|YP_004243833.1| - 0.0059 16.8 3.3 0.0083 16.3 2.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|325967641|ref|YP_004243833.1| - 0.027 13.7 5.7 0.26 10.5 5.6 2.4 1 1 0 1 1 1 0 FAD binding domain GIDA PF01134.22 gi|325967641|ref|YP_004243833.1| - 0.12 11.4 4.1 0.091 11.8 1.5 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A GDPD PF03009.17 gi|325967642|ref|YP_004243834.1| - 1.6e-47 162.4 0.0 2.3e-47 161.9 0.0 1.2 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|325967642|ref|YP_004243834.1| - 1.7e-10 41.0 0.4 3e-08 33.8 0.2 2.6 2 0 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family PreAtp-grasp PF18604.1 gi|325967642|ref|YP_004243834.1| - 0.15 11.7 0.0 0.43 10.2 0.0 1.7 2 0 0 2 2 2 0 Pre ATP-grasp domain Sugar_tr PF00083.24 gi|325967643|ref|YP_004243835.1| - 1.5e-65 221.8 29.1 1.8e-65 221.6 29.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325967643|ref|YP_004243835.1| - 4.3e-31 108.1 48.7 4.3e-31 108.1 48.7 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily FGGY_N PF00370.21 gi|325967644|ref|YP_004243836.1| - 9.1e-72 241.6 0.0 1.2e-71 241.2 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|325967644|ref|YP_004243836.1| - 1e-58 198.4 0.0 3.7e-58 196.5 0.0 1.8 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|325967644|ref|YP_004243836.1| - 0.19 11.2 0.0 0.61 9.5 0.0 1.8 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family Aminotran_1_2 PF00155.21 gi|325967645|ref|YP_004243837.1| - 4.9e-13 49.0 0.0 1.1e-12 47.9 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II ATP-synt_8 PF00895.20 gi|325967646|ref|YP_004243838.1| - 0.18 12.3 1.4 0.29 11.6 1.4 1.4 1 0 0 1 1 1 0 ATP synthase protein 8 Methyltransf_31 PF13847.6 gi|325967647|ref|YP_004243839.1| - 8.2e-18 64.6 0.0 1.1e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325967647|ref|YP_004243839.1| - 5.2e-15 55.9 0.1 9.4e-15 55.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|325967647|ref|YP_004243839.1| - 3.9e-14 52.6 0.0 5.7e-14 52.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|325967647|ref|YP_004243839.1| - 8.3e-11 41.8 0.1 1.1e-10 41.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|325967647|ref|YP_004243839.1| - 1.2e-10 41.9 0.0 2.3e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|325967647|ref|YP_004243839.1| - 1.1e-09 38.2 0.0 1.5e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|325967647|ref|YP_004243839.1| - 4.3e-09 36.3 0.2 4.2e-08 33.1 0.2 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|325967647|ref|YP_004243839.1| - 8e-08 32.9 0.0 2e-07 31.7 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|325967647|ref|YP_004243839.1| - 4.2e-07 29.7 0.1 5.9e-07 29.2 0.1 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|325967647|ref|YP_004243839.1| - 5.6e-07 29.5 0.0 6.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.16 gi|325967647|ref|YP_004243839.1| - 5.8e-06 25.7 0.0 7.2e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain TehB PF03848.14 gi|325967647|ref|YP_004243839.1| - 1.1e-05 24.9 0.0 1.7e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|325967647|ref|YP_004243839.1| - 4.1e-05 23.0 0.0 6.2e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.19 gi|325967647|ref|YP_004243839.1| - 0.00011 22.1 0.0 0.00017 21.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.11 gi|325967647|ref|YP_004243839.1| - 0.00017 21.3 0.0 0.00028 20.5 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Met_10 PF02475.16 gi|325967647|ref|YP_004243839.1| - 0.00019 21.3 0.1 0.00023 21.0 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|325967647|ref|YP_004243839.1| - 0.0012 18.3 1.1 0.0023 17.4 0.0 1.8 2 0 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.19 gi|325967647|ref|YP_004243839.1| - 0.0018 18.4 0.0 0.002 18.3 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_16 PF10294.9 gi|325967647|ref|YP_004243839.1| - 0.0032 17.2 0.7 0.12 12.1 0.1 2.6 2 1 0 2 2 2 1 Lysine methyltransferase Methyltransf_18 PF12847.7 gi|325967647|ref|YP_004243839.1| - 0.0037 17.2 0.0 0.0057 16.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.9 gi|325967647|ref|YP_004243839.1| - 0.011 15.0 0.0 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|325967647|ref|YP_004243839.1| - 0.017 14.0 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|325967647|ref|YP_004243839.1| - 0.02 14.0 0.1 0.027 13.6 0.1 1.2 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_32 PF13679.6 gi|325967647|ref|YP_004243839.1| - 0.022 14.7 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|325967647|ref|YP_004243839.1| - 0.035 14.1 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Methyltransf_3 PF01596.17 gi|325967647|ref|YP_004243839.1| - 0.038 13.1 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase GidB PF02527.15 gi|325967647|ref|YP_004243839.1| - 0.083 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G CMAS PF02353.20 gi|325967647|ref|YP_004243839.1| - 0.1 11.9 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PhoU PF01895.19 gi|325967648|ref|YP_004243840.1| - 3.5e-11 43.4 1.4 3.5e-11 43.4 1.4 2.7 1 1 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|325967648|ref|YP_004243840.1| - 1.4e-05 24.9 1.6 3.7e-05 23.5 1.6 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin GAT PF03127.14 gi|325967648|ref|YP_004243840.1| - 0.023 15.0 1.8 0.036 14.4 0.5 1.9 2 0 0 2 2 2 0 GAT domain Synaptonemal_3 PF15191.6 gi|325967648|ref|YP_004243840.1| - 0.14 12.0 0.1 0.14 12.0 0.1 2.0 3 0 0 3 3 3 0 Synaptonemal complex central element protein 3 CTP_transf_like PF01467.26 gi|325967649|ref|YP_004243841.1| - 2.3e-14 53.8 0.0 2.7e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|325967649|ref|YP_004243841.1| - 0.035 14.0 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase Peptidase_M28 PF04389.17 gi|325967650|ref|YP_004243842.1| - 2.4e-16 60.0 0.1 3.1e-15 56.4 0.1 2.1 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|325967650|ref|YP_004243842.1| - 0.00011 22.2 0.0 0.00018 21.5 0.0 1.3 1 0 0 1 1 1 1 PA domain DUF2811 PF10929.8 gi|325967650|ref|YP_004243842.1| - 0.014 15.6 0.0 0.037 14.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2811) DUF1852 PF08908.11 gi|325967650|ref|YP_004243842.1| - 0.016 14.2 0.1 0.025 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1852) CEP170_C PF15308.6 gi|325967650|ref|YP_004243842.1| - 0.3 9.6 0.2 0.42 9.1 0.2 1.1 1 0 0 1 1 1 0 CEP170 C-terminus FOP_dimer PF09398.10 gi|325967651|ref|YP_004243843.1| - 0.021 15.1 0.1 0.03 14.6 0.1 1.2 1 0 0 1 1 1 0 FOP N terminal dimerisation domain LAB_N PF07578.11 gi|325967652|ref|YP_004243844.1| - 0.0022 18.1 0.7 0.0022 18.1 0.7 2.4 3 0 0 3 3 3 1 Lipid A Biosynthesis N-terminal domain DUF4064 PF13273.6 gi|325967652|ref|YP_004243844.1| - 0.8 10.0 24.6 0.029 14.6 14.8 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF4064) DUF4231 PF14015.6 gi|325967652|ref|YP_004243844.1| - 2.8 8.5 6.4 0.3 11.6 0.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF4231) UPF0182 PF03699.13 gi|325967652|ref|YP_004243844.1| - 4.7 5.2 8.0 5.9 4.9 8.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) Acyl-CoA_dh_1 PF00441.24 gi|325967653|ref|YP_004243845.1| - 4.5e-37 127.5 1.3 7.5e-37 126.8 1.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|325967653|ref|YP_004243845.1| - 2.1e-19 70.3 0.2 7.4e-19 68.5 0.0 2.0 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|325967653|ref|YP_004243845.1| - 5.2e-18 65.6 0.0 8e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|325967653|ref|YP_004243845.1| - 2e-13 50.4 0.1 3.5e-13 49.6 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF763 PF05559.11 gi|325967654|ref|YP_004243846.1| - 2.5e-117 391.5 0.0 3e-117 391.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Methyltransf_19 PF04672.12 gi|325967654|ref|YP_004243846.1| - 0.14 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl methyltransferase nsp8 PF08717.10 gi|325967655|ref|YP_004243847.1| - 0.011 15.6 1.1 0.015 15.2 1.1 1.2 1 0 0 1 1 1 0 nsp8 replicase PCI PF01399.27 gi|325967655|ref|YP_004243847.1| - 0.21 12.1 1.7 0.4 11.2 0.6 2.1 2 1 0 2 2 2 0 PCI domain Orthopox_F14 PF06076.12 gi|325967655|ref|YP_004243847.1| - 1.1 9.5 6.0 1.3 9.3 2.2 2.6 2 1 1 3 3 3 0 Orthopoxvirus F14 protein zf-C2H2_4 PF13894.6 gi|325967656|ref|YP_004243848.1| - 0.011 16.5 0.5 0.011 16.5 0.5 1.9 3 0 0 3 3 3 0 C2H2-type zinc finger zf_CopZ PF18423.1 gi|325967656|ref|YP_004243848.1| - 0.024 14.6 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 Zinc binding domain zf-C2H2_9 PF16293.5 gi|325967656|ref|YP_004243848.1| - 0.031 14.1 0.1 0.036 13.9 0.1 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger (1 copy) zf-C2H2_2 PF12756.7 gi|325967656|ref|YP_004243848.1| - 0.057 13.8 0.3 0.059 13.7 0.3 1.1 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) Zn_Tnp_IS1595 PF12760.7 gi|325967656|ref|YP_004243848.1| - 0.08 12.9 0.6 0.08 12.9 0.6 1.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain ARS2 PF04959.13 gi|325967656|ref|YP_004243848.1| - 0.2 12.0 0.2 0.21 11.9 0.2 1.1 1 0 0 1 1 1 0 Arsenite-resistance protein 2 zf-ribbon_3 PF13248.6 gi|325967656|ref|YP_004243848.1| - 0.28 10.6 3.3 0.83 9.1 0.8 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Phosphorylase PF00343.20 gi|325967657|ref|YP_004243849.1| - 7.2e-16 57.6 0.0 5.8e-15 54.6 0.0 2.3 1 1 1 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|325967657|ref|YP_004243849.1| - 1.2e-06 28.2 0.0 3.4e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325967657|ref|YP_004243849.1| - 5.1e-05 23.7 0.0 0.00023 21.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|325967657|ref|YP_004243849.1| - 0.019 14.6 0.0 0.073 12.8 0.0 2.0 2 0 0 2 2 2 0 Starch synthase catalytic domain Glyco_transf_4 PF13439.6 gi|325967657|ref|YP_004243849.1| - 0.032 14.2 0.3 0.26 11.3 0.1 2.4 2 0 0 2 2 2 0 Glycosyltransferase Family 4 CobS PF02654.15 gi|325967658|ref|YP_004243850.1| - 2.5e-31 109.5 14.6 2.9e-31 109.3 14.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CitMHS PF03600.16 gi|325967659|ref|YP_004243851.1| - 1.1e-38 133.1 28.6 1.9e-36 125.8 29.1 2.1 1 1 1 2 2 2 2 Citrate transporter DUF3397 PF11877.8 gi|325967659|ref|YP_004243851.1| - 0.047 13.9 0.1 0.047 13.9 0.1 4.6 5 1 1 6 6 6 0 Protein of unknown function (DUF3397) AAA_18 PF13238.6 gi|325967661|ref|YP_004243853.1| - 4.6e-14 53.1 0.0 7.2e-14 52.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Hydin_ADK PF17213.3 gi|325967661|ref|YP_004243853.1| - 3.6e-06 27.4 0.0 5.4e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Hydin Adenylate kinase-like domain SKI PF01202.22 gi|325967661|ref|YP_004243853.1| - 0.00012 22.2 0.0 0.0004 20.5 0.0 1.9 1 1 0 1 1 1 1 Shikimate kinase AAA_24 PF13479.6 gi|325967661|ref|YP_004243853.1| - 0.0008 19.2 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|325967661|ref|YP_004243853.1| - 0.0024 18.3 0.1 0.0044 17.4 0.1 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325967661|ref|YP_004243853.1| - 0.0033 17.8 0.2 0.018 15.4 0.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.6 gi|325967661|ref|YP_004243853.1| - 0.004 17.6 0.0 0.016 15.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|325967661|ref|YP_004243853.1| - 0.0078 16.5 0.0 0.013 15.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|325967661|ref|YP_004243853.1| - 0.0098 16.1 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|325967661|ref|YP_004243853.1| - 0.012 15.6 1.3 0.027 14.4 0.3 2.0 2 1 1 3 3 3 0 NTPase KTI12 PF08433.10 gi|325967661|ref|YP_004243853.1| - 0.014 14.9 0.0 0.024 14.1 0.0 1.4 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|325967661|ref|YP_004243853.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|325967661|ref|YP_004243853.1| - 0.03 14.2 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain CoaE PF01121.20 gi|325967661|ref|YP_004243853.1| - 0.097 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Dephospho-CoA kinase AAA_25 PF13481.6 gi|325967661|ref|YP_004243853.1| - 0.1 12.2 0.4 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|325967661|ref|YP_004243853.1| - 0.11 12.7 0.2 0.43 10.9 0.1 1.9 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|325967661|ref|YP_004243853.1| - 0.16 11.3 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|325967661|ref|YP_004243853.1| - 0.28 11.5 0.7 0.61 10.4 0.4 1.7 1 1 1 2 2 2 0 AAA domain tRNA-synt_2 PF00152.20 gi|325967662|ref|YP_004243854.1| - 3.2e-91 305.7 0.0 3.8e-91 305.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|325967662|ref|YP_004243854.1| - 2.4e-10 40.3 0.3 5.3e-10 39.1 0.3 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|325967662|ref|YP_004243854.1| - 0.00066 19.2 0.7 0.051 13.0 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) FGFR3_TM PF18123.1 gi|325967662|ref|YP_004243854.1| - 0.04 13.4 0.3 0.078 12.5 0.3 1.5 1 0 0 1 1 1 0 Fibroblast growth factor receptor 3 transmembrane domain BOF PF04076.13 gi|325967662|ref|YP_004243854.1| - 0.078 13.0 0.2 0.12 12.5 0.2 1.3 1 0 0 1 1 1 0 Bacterial OB fold (BOF) protein 7tm_1 PF00001.21 gi|325967663|ref|YP_004243855.1| - 0.046 13.0 0.0 0.046 13.0 0.0 1.1 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) CpXC PF14353.6 gi|325967663|ref|YP_004243855.1| - 0.13 12.3 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 CpXC protein DUF1512 PF07431.12 gi|325967664|ref|YP_004243856.1| - 1.1e-123 412.8 0.6 1.2e-123 412.6 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) SSPI PF14098.6 gi|325967664|ref|YP_004243856.1| - 0.0042 17.2 0.1 0.014 15.5 0.1 1.9 1 0 0 1 1 1 1 Small, acid-soluble spore protein I Radical_SAM PF04055.21 gi|325967665|ref|YP_004243857.1| - 1.7e-12 48.1 0.0 3.5e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|325967665|ref|YP_004243857.1| - 2.4e-05 24.6 0.0 4.4e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325967665|ref|YP_004243857.1| - 0.0032 17.6 0.0 0.0054 16.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|325967665|ref|YP_004243857.1| - 0.061 13.8 0.3 0.22 12.1 0.3 2.1 1 1 0 1 1 1 0 Iron-sulfur cluster-binding domain RecG_wedge PF17191.4 gi|325967665|ref|YP_004243857.1| - 0.07 12.7 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 RecG wedge domain Laminin_II PF06009.12 gi|325967666|ref|YP_004243858.1| - 0.00057 19.9 2.0 0.019 15.0 1.3 2.4 2 0 0 2 2 2 1 Laminin Domain II DUF2262 PF10020.9 gi|325967666|ref|YP_004243858.1| - 0.019 15.3 9.9 3.7 7.9 0.0 3.5 3 2 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2262) zf-C4H2 PF10146.9 gi|325967666|ref|YP_004243858.1| - 0.067 13.5 3.5 0.14 12.4 3.5 1.5 1 0 0 1 1 1 0 Zinc finger-containing protein DUF1908 PF08926.11 gi|325967666|ref|YP_004243858.1| - 0.092 11.8 1.0 0.16 11.0 1.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) PPR_2 PF13041.6 gi|325967666|ref|YP_004243858.1| - 0.18 12.0 1.0 3.1 8.1 0.0 2.9 3 0 0 3 3 3 0 PPR repeat family FliS PF02561.14 gi|325967666|ref|YP_004243858.1| - 0.36 11.1 4.1 0.2 11.9 1.1 2.2 2 0 0 2 2 2 0 Flagellar protein FliS CR6_interact PF10147.9 gi|325967666|ref|YP_004243858.1| - 1 9.0 11.0 0.16 11.7 6.1 2.0 2 0 0 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Na_Ca_ex_C PF16494.5 gi|325967666|ref|YP_004243858.1| - 2.4 8.7 5.4 8.6 6.8 3.2 2.9 2 1 0 2 2 2 0 C-terminal extension of sodium/calcium exchanger domain Vir_act_alpha_C PF10400.9 gi|325967666|ref|YP_004243858.1| - 4.3 8.1 10.0 38 5.1 0.4 3.9 2 1 1 3 3 3 0 Virulence activator alpha C-term MFS_1 PF07690.16 gi|325967667|ref|YP_004243859.1| - 4.7e-43 147.5 42.8 4.7e-43 147.5 42.8 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF4396 PF14342.6 gi|325967667|ref|YP_004243859.1| - 0.0012 19.2 0.5 0.0012 19.2 0.5 4.3 5 1 1 6 6 6 1 Domain of unknown function (DUF4396) Cren7 PF11520.8 gi|325967669|ref|YP_004243861.1| - 4.7e-13 48.8 0.9 5.8e-13 48.5 0.9 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 ANAPC4_WD40 PF12894.7 gi|325967669|ref|YP_004243861.1| - 0.045 14.1 0.0 0.053 13.8 0.0 1.1 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain DHBP_synthase PF00926.19 gi|325967670|ref|YP_004243862.1| - 3.8e-47 160.3 0.0 4.4e-47 160.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase NTP_transferase PF00483.23 gi|325967671|ref|YP_004243863.1| - 3.8e-35 121.6 0.0 4.3e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|325967671|ref|YP_004243863.1| - 2.3e-13 50.8 0.0 4.2e-13 49.9 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|325967671|ref|YP_004243863.1| - 1.5e-05 24.9 0.0 3.1e-05 23.8 0.0 1.6 2 1 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|325967671|ref|YP_004243863.1| - 0.021 14.7 0.1 0.037 13.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) MoaC PF01967.21 gi|325967672|ref|YP_004243864.1| - 2.4e-60 202.5 1.9 3.1e-33 114.7 0.3 2.1 2 0 0 2 2 2 2 MoaC family Big_6 PF17936.1 gi|325967672|ref|YP_004243864.1| - 1.5 9.1 0.0 1.5 9.1 0.0 2.9 4 0 0 4 4 4 0 Bacterial Ig domain Thymidylate_kin PF02223.17 gi|325967673|ref|YP_004243865.1| - 1.1e-45 155.7 0.0 1.2e-45 155.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|325967673|ref|YP_004243865.1| - 3.5e-07 30.3 0.2 3.2e-05 23.9 0.2 2.1 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|325967673|ref|YP_004243865.1| - 7.7e-06 26.5 0.0 0.00012 22.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|325967673|ref|YP_004243865.1| - 0.00062 18.8 0.0 0.00081 18.4 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|325967673|ref|YP_004243865.1| - 0.0023 18.3 0.0 0.0037 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|325967673|ref|YP_004243865.1| - 0.0026 17.5 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|325967673|ref|YP_004243865.1| - 0.0059 17.0 0.0 1 9.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|325967673|ref|YP_004243865.1| - 0.0067 16.3 0.1 0.035 14.0 0.0 2.0 2 0 0 2 2 2 1 NTPase AAA_28 PF13521.6 gi|325967673|ref|YP_004243865.1| - 0.012 15.9 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Ploopntkinase1 PF18748.1 gi|325967673|ref|YP_004243865.1| - 0.019 14.5 0.0 0.74 9.3 0.0 2.1 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 AAA_22 PF13401.6 gi|325967673|ref|YP_004243865.1| - 0.031 14.6 0.0 0.056 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain PPK2 PF03976.14 gi|325967673|ref|YP_004243865.1| - 0.09 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) APS_kinase PF01583.20 gi|325967673|ref|YP_004243865.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|325967673|ref|YP_004243865.1| - 0.12 12.5 0.0 0.4 10.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF3185 PF11381.8 gi|325967674|ref|YP_004243866.1| - 0.0028 17.6 20.4 0.04 13.9 5.0 3.0 3 0 0 3 3 3 2 Protein of unknown function (DUF3185) CRPA PF05745.11 gi|325967674|ref|YP_004243866.1| - 0.056 13.5 0.7 0.056 13.5 0.7 2.2 2 0 0 2 2 2 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF2207 PF09972.9 gi|325967674|ref|YP_004243866.1| - 0.069 11.9 0.3 0.11 11.3 0.3 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Neurensin PF14927.6 gi|325967674|ref|YP_004243866.1| - 0.42 10.3 5.3 5 6.8 0.8 2.2 2 0 0 2 2 2 0 Neurensin Tetraspanin PF00335.20 gi|325967674|ref|YP_004243866.1| - 0.63 9.7 6.6 2.6 7.7 0.7 2.2 2 0 0 2 2 2 0 Tetraspanin family PorA PF11271.8 gi|325967674|ref|YP_004243866.1| - 1 8.6 6.6 9.6 5.4 0.1 2.1 2 0 0 2 2 2 0 Porin PorA DUF3784 PF12650.7 gi|325967674|ref|YP_004243866.1| - 1.2 9.4 11.3 3.8 7.8 0.5 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Inos-1-P_synth PF01658.17 gi|325967675|ref|YP_004243867.1| - 1.1e-21 77.1 0.0 3.1e-21 75.7 0.0 1.7 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase Plavaka PF18759.1 gi|325967675|ref|YP_004243867.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Plavaka transposase Pox_F11 PF04943.12 gi|325967675|ref|YP_004243867.1| - 0.16 11.0 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Poxvirus F11 protein Corona_S2 PF01601.16 gi|325967675|ref|YP_004243867.1| - 0.25 9.8 0.0 0.35 9.3 0.0 1.1 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein ATPase PF06745.13 gi|325967676|ref|YP_004243868.1| - 1.7e-63 214.1 0.1 1.9e-63 213.9 0.1 1.0 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|325967676|ref|YP_004243868.1| - 0.0002 20.9 0.0 0.0004 19.9 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|325967676|ref|YP_004243868.1| - 0.00031 20.4 0.0 0.00053 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|325967676|ref|YP_004243868.1| - 0.0012 17.6 0.8 0.0029 16.3 0.8 1.5 1 1 0 1 1 1 1 GvpD gas vesicle protein DEAD PF00270.29 gi|325967676|ref|YP_004243868.1| - 0.0046 16.7 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Rad51 PF08423.11 gi|325967676|ref|YP_004243868.1| - 0.014 14.7 0.1 0.021 14.1 0.1 1.2 1 0 0 1 1 1 0 Rad51 DnaB_C PF03796.15 gi|325967676|ref|YP_004243868.1| - 0.024 14.0 0.0 0.056 12.8 0.0 1.3 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain ResIII PF04851.15 gi|325967676|ref|YP_004243868.1| - 0.037 14.0 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit PAXNEB PF05625.11 gi|325967676|ref|YP_004243868.1| - 0.059 12.5 0.3 0.083 12.0 0.3 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.9 gi|325967676|ref|YP_004243868.1| - 0.087 12.1 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|325967676|ref|YP_004243868.1| - 0.18 12.2 0.1 0.25 11.7 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|325967676|ref|YP_004243868.1| - 0.18 12.1 0.4 1.2 9.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain TPP_enzyme_C PF02775.21 gi|325967677|ref|YP_004243869.1| - 2.2e-28 99.0 0.1 4.6e-28 97.9 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|325967677|ref|YP_004243869.1| - 2.8e-19 69.0 0.1 6e-19 67.9 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|325967678|ref|YP_004243870.1| - 5.6e-61 206.2 0.0 8.4e-61 205.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|325967678|ref|YP_004243870.1| - 7.3e-36 123.9 0.0 3.3e-35 121.7 0.0 2.1 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|325967678|ref|YP_004243870.1| - 8.4e-09 35.7 0.0 2.4e-08 34.2 0.0 1.9 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|325967678|ref|YP_004243870.1| - 3e-05 23.9 0.0 9.3e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|325967678|ref|YP_004243870.1| - 4e-05 23.3 0.0 9.6e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PaREP1 PF05942.11 gi|325967680|ref|YP_004243872.1| - 0.0037 17.2 0.1 0.0045 16.9 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF2250 PF10007.9 gi|325967684|ref|YP_004243876.1| - 1.2e-33 115.1 0.2 1.4e-33 114.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|325967684|ref|YP_004243876.1| - 0.00018 21.3 0.1 0.00036 20.4 0.1 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|325967684|ref|YP_004243876.1| - 0.00045 20.1 0.1 0.0032 17.3 0.1 2.1 1 1 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|325967684|ref|YP_004243876.1| - 0.00053 19.7 0.0 0.00057 19.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|325967684|ref|YP_004243876.1| - 0.0019 18.5 0.1 0.0029 17.9 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|325967684|ref|YP_004243876.1| - 0.0041 17.0 0.2 0.39 10.7 0.1 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|325967684|ref|YP_004243876.1| - 0.0044 16.6 0.0 0.1 12.2 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|325967684|ref|YP_004243876.1| - 0.0049 17.0 0.1 0.0084 16.2 0.1 1.3 1 0 0 1 1 1 1 DprA winged helix domain HTH_27 PF13463.6 gi|325967684|ref|YP_004243876.1| - 0.038 14.5 0.1 0.064 13.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|325967684|ref|YP_004243876.1| - 0.041 13.9 0.1 0.87 9.6 0.1 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|325967684|ref|YP_004243876.1| - 0.068 12.9 0.1 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Sigma-70, region 4 PAPS_reduct PF01507.19 gi|325967684|ref|YP_004243876.1| - 0.076 13.0 0.0 0.081 13.0 0.0 1.1 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family HTH_47 PF16221.5 gi|325967684|ref|YP_004243876.1| - 0.12 12.0 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix DUF3394 PF11874.8 gi|325967684|ref|YP_004243876.1| - 0.16 11.6 0.0 0.19 11.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3394) CcdA PF07362.12 gi|325967685|ref|YP_004243877.1| - 1.3e-07 32.0 0.7 1.6e-07 31.6 0.7 1.1 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.11 gi|325967685|ref|YP_004243877.1| - 0.003 18.3 1.2 0.0035 18.1 1.2 1.1 1 0 0 1 1 1 1 Rv0623-like transcription factor RHH_3 PF12651.7 gi|325967685|ref|YP_004243877.1| - 0.0035 17.3 3.2 0.29 11.1 0.1 2.4 1 1 1 2 2 2 2 Ribbon-helix-helix domain Nup84_Nup100 PF04121.13 gi|325967685|ref|YP_004243877.1| - 0.0098 14.0 0.2 0.01 14.0 0.2 1.0 1 0 0 1 1 1 1 Nuclear pore protein 84 / 107 DUF2067 PF09840.9 gi|325967685|ref|YP_004243877.1| - 0.01 15.4 1.4 0.013 15.1 1.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) eIF3_N PF09440.10 gi|325967685|ref|YP_004243877.1| - 0.02 15.4 0.4 0.031 14.7 0.4 1.4 1 1 0 1 1 1 0 eIF3 subunit 6 N terminal domain YtxC PF08812.11 gi|325967685|ref|YP_004243877.1| - 0.026 14.2 0.5 0.031 13.9 0.5 1.3 1 0 0 1 1 1 0 YtxC-like family RHH_1 PF01402.21 gi|325967685|ref|YP_004243877.1| - 0.03 14.3 0.4 0.03 14.3 0.4 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Mistic PF11458.8 gi|325967685|ref|YP_004243877.1| - 0.033 14.1 0.2 0.075 13.0 0.1 1.5 1 1 0 1 1 1 0 Membrane-integrating protein Mistic PIN_2 PF10130.9 gi|325967686|ref|YP_004243878.1| - 6.5e-08 32.9 0.2 7.9e-08 32.6 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN PF01850.21 gi|325967686|ref|YP_004243878.1| - 0.00024 21.6 0.8 0.00029 21.3 0.8 1.1 1 0 0 1 1 1 1 PIN domain DUF1048 PF06304.11 gi|325967686|ref|YP_004243878.1| - 0.044 14.2 0.0 0.065 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1048) EamA PF00892.20 gi|325967687|ref|YP_004243879.1| - 1e-28 100.2 44.5 9.6e-15 55.0 16.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family CRT-like PF08627.10 gi|325967687|ref|YP_004243879.1| - 0.1 11.5 14.9 0.0087 15.0 8.5 2.2 2 0 0 2 2 2 0 CRT-like, chloroquine-resistance transporter-like UPF0640 PF15114.6 gi|325967687|ref|YP_004243879.1| - 0.11 12.4 0.1 3.2 7.6 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0640 NIR_SIR PF01077.22 gi|325967688|ref|YP_004243880.1| - 1.2e-24 86.6 0.0 9.6e-17 60.9 0.0 2.4 2 1 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|325967688|ref|YP_004243880.1| - 1.7e-11 43.8 0.0 9.6e-05 22.2 0.0 2.5 2 0 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Radical_SAM PF04055.21 gi|325967689|ref|YP_004243881.1| - 0.00016 22.1 1.4 0.00098 19.5 1.4 2.3 1 1 0 1 1 1 1 Radical SAM superfamily ATPase_2 PF01637.18 gi|325967690|ref|YP_004243882.1| - 2.1e-13 50.8 0.0 3.4e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|325967690|ref|YP_004243882.1| - 3.8e-07 30.5 0.0 2e-06 28.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325967690|ref|YP_004243882.1| - 4.8e-07 30.3 0.1 1.2e-06 29.1 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|325967690|ref|YP_004243882.1| - 8.4e-07 29.1 0.2 0.00014 21.9 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|325967690|ref|YP_004243882.1| - 0.0042 16.6 0.0 0.0076 15.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF4423 PF14394.6 gi|325967690|ref|YP_004243882.1| - 0.01 15.6 0.1 0.18 11.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) AAA PF00004.29 gi|325967690|ref|YP_004243882.1| - 0.03 14.8 0.0 0.37 11.2 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MscS_TM PF12794.7 gi|325967691|ref|YP_004243883.1| - 0.0072 15.2 1.3 0.0072 15.2 1.3 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 YqzM PF14141.6 gi|325967691|ref|YP_004243883.1| - 0.027 14.5 1.1 0.027 14.5 1.1 2.1 2 0 0 2 2 2 0 YqzM-like protein DUF420 PF04238.12 gi|325967691|ref|YP_004243883.1| - 0.03 14.6 1.1 0.035 14.4 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF420) DUF202 PF02656.15 gi|325967691|ref|YP_004243883.1| - 0.41 11.1 5.0 1.1 9.8 5.3 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF202) TMEM208_SND2 PF05620.11 gi|325967692|ref|YP_004243884.1| - 0.18 11.6 0.8 0.21 11.3 0.8 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 DUF3784 PF12650.7 gi|325967692|ref|YP_004243884.1| - 0.38 11.0 5.1 0.51 10.6 5.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF2207 PF09972.9 gi|325967692|ref|YP_004243884.1| - 0.91 8.2 5.4 0.97 8.1 5.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PilO PF04350.13 gi|325967693|ref|YP_004243885.1| - 0.15 12.2 0.0 0.26 11.5 0.0 1.5 1 1 0 1 1 1 0 Pilus assembly protein, PilO RmlD_sub_bind PF04321.17 gi|325967694|ref|YP_004243886.1| - 7.2e-57 192.7 0.0 8.1e-57 192.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|325967694|ref|YP_004243886.1| - 5.6e-18 65.3 0.1 7.8e-18 64.8 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|325967694|ref|YP_004243886.1| - 8.6e-13 48.4 0.1 1.5e-12 47.6 0.1 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|325967694|ref|YP_004243886.1| - 1e-10 41.3 0.0 1.1e-09 37.8 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|325967694|ref|YP_004243886.1| - 6.4e-07 28.8 0.0 1.7e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|325967694|ref|YP_004243886.1| - 7.6e-06 25.1 0.0 1.2e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family PNP_UDP_1 PF01048.20 gi|325967694|ref|YP_004243886.1| - 0.08 12.2 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Phosphorylase superfamily Copper-bind PF00127.20 gi|325967695|ref|YP_004243887.1| - 1.2e-06 28.9 0.0 2.9e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family SoxE PF06525.11 gi|325967695|ref|YP_004243887.1| - 2.2e-06 27.2 3.3 5.8e-06 25.9 2.4 2.3 1 1 0 1 1 1 1 Sulfocyanin (SoxE) domain Cu-oxidase_3 PF07732.15 gi|325967695|ref|YP_004243887.1| - 0.00073 19.5 2.3 0.0014 18.6 0.8 2.1 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|325967695|ref|YP_004243887.1| - 0.071 12.9 0.1 0.91 9.3 0.0 2.2 2 0 0 2 2 2 0 Multicopper oxidase HemY_N PF07219.13 gi|325967696|ref|YP_004243888.1| - 0.11 12.7 2.3 0.14 12.4 2.3 1.1 1 0 0 1 1 1 0 HemY protein N-terminus WSS_VP PF12175.8 gi|325967696|ref|YP_004243888.1| - 0.12 11.9 0.2 0.12 11.8 0.2 1.0 1 0 0 1 1 1 0 White spot syndrome virus structural envelope protein VP DUF2162 PF09930.9 gi|325967696|ref|YP_004243888.1| - 0.13 11.6 7.0 0.21 11.0 7.0 1.3 1 1 0 1 1 1 0 Predicted transporter (DUF2162) DUF4811 PF16069.5 gi|325967696|ref|YP_004243888.1| - 0.35 10.7 0.9 0.4 10.5 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4811) DUF2244 PF10003.9 gi|325967696|ref|YP_004243888.1| - 0.36 10.5 5.5 0.41 10.3 5.5 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) PhoR PF11808.8 gi|325967696|ref|YP_004243888.1| - 0.43 11.0 6.9 0.51 10.8 6.7 1.3 1 1 0 1 1 1 0 Phosphate regulon sensor protein PhoR FA_desaturase PF00487.24 gi|325967696|ref|YP_004243888.1| - 0.49 10.2 7.3 0.52 10.1 7.3 1.1 1 0 0 1 1 1 0 Fatty acid desaturase EphA2_TM PF14575.6 gi|325967696|ref|YP_004243888.1| - 0.6 11.0 2.3 0.76 10.7 2.3 1.1 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain Syndecan PF01034.20 gi|325967696|ref|YP_004243888.1| - 1 9.3 6.3 1.5 8.8 6.3 1.2 1 0 0 1 1 1 0 Syndecan domain MarR_2 PF12802.7 gi|325967697|ref|YP_004243889.1| - 2.4e-06 27.3 0.0 3.5e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|325967697|ref|YP_004243889.1| - 0.006 16.4 0.1 0.0094 15.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|325967697|ref|YP_004243889.1| - 0.031 14.1 0.0 0.054 13.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|325967697|ref|YP_004243889.1| - 0.037 14.0 0.0 0.087 12.8 0.0 1.5 2 0 0 2 2 2 0 MarR family AbiEi_4 PF13338.6 gi|325967697|ref|YP_004243889.1| - 0.068 13.3 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_11 PF08279.12 gi|325967697|ref|YP_004243889.1| - 0.074 13.0 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|325967697|ref|YP_004243889.1| - 0.091 12.8 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|325967697|ref|YP_004243889.1| - 0.099 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sigma_reg_N PF13800.6 gi|325967697|ref|YP_004243889.1| - 0.56 10.5 3.1 11 6.3 0.6 2.3 2 0 0 2 2 2 0 Sigma factor regulator N-terminal FAA_hydrolase PF01557.18 gi|325967698|ref|YP_004243890.1| - 2.8e-69 233.1 0.0 3.4e-69 232.8 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family GAPES1 PF17155.4 gi|325967698|ref|YP_004243890.1| - 0.12 11.6 0.0 0.54 9.5 0.0 1.8 2 0 0 2 2 2 0 Gammaproteobacterial periplasmic sensor domain Pyr_redox_2 PF07992.14 gi|325967699|ref|YP_004243891.1| - 2.1e-34 119.1 0.6 2.7e-34 118.8 0.6 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|325967699|ref|YP_004243891.1| - 2.7e-10 40.0 2.5 9.8e-07 28.3 0.1 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|325967699|ref|YP_004243891.1| - 1.3e-08 34.9 4.1 0.012 15.2 0.0 3.1 3 0 0 3 3 3 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|325967699|ref|YP_004243891.1| - 8.1e-08 32.4 1.0 1.2e-05 25.4 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|325967699|ref|YP_004243891.1| - 4.4e-06 27.2 8.2 0.0068 16.9 1.9 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|325967699|ref|YP_004243891.1| - 7e-06 25.4 5.4 0.14 11.2 0.3 3.7 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.14 gi|325967699|ref|YP_004243891.1| - 0.00017 20.5 2.7 0.003 16.3 0.1 2.6 3 0 0 3 3 3 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|325967699|ref|YP_004243891.1| - 0.00018 20.9 0.1 0.52 9.6 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|325967699|ref|YP_004243891.1| - 0.0003 20.3 1.1 0.12 11.7 0.7 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|325967699|ref|YP_004243891.1| - 0.0003 20.1 0.7 0.024 13.9 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain Shikimate_DH PF01488.20 gi|325967699|ref|YP_004243891.1| - 0.0015 18.6 0.6 0.45 10.6 0.1 2.6 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.17 gi|325967699|ref|YP_004243891.1| - 0.0039 16.5 0.3 0.012 14.8 0.0 1.8 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|325967699|ref|YP_004243891.1| - 0.0058 16.5 2.0 0.15 12.0 0.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|325967699|ref|YP_004243891.1| - 0.015 14.4 7.7 0.19 10.8 0.6 2.8 2 1 0 3 3 3 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|325967699|ref|YP_004243891.1| - 0.12 11.7 0.0 6 6.0 0.0 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|325967699|ref|YP_004243891.1| - 0.16 11.9 2.1 0.31 11.0 0.1 2.3 3 0 0 3 3 3 0 FAD-NAD(P)-binding F420_oxidored PF03807.17 gi|325967699|ref|YP_004243891.1| - 0.91 10.2 3.7 12 6.5 0.4 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF89 PF01937.19 gi|325967700|ref|YP_004243892.1| - 1.9e-20 73.1 1.0 1.6e-19 70.1 1.0 1.9 1 1 0 1 1 1 1 Protein of unknown function DUF89 Glyco_trans_4_4 PF13579.6 gi|325967700|ref|YP_004243892.1| - 0.088 13.2 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain IF-2B PF01008.17 gi|325967701|ref|YP_004243893.1| - 3e-22 79.2 0.1 1e-20 74.1 0.1 2.3 1 1 0 1 1 1 1 Initiation factor 2 subunit family CxxCxxCC PF03692.15 gi|325967702|ref|YP_004243894.1| - 5.9e-11 42.9 0.7 8.6e-11 42.4 0.7 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DegT_DnrJ_EryC1 PF01041.17 gi|325967703|ref|YP_004243895.1| - 4.9e-122 407.7 0.0 5.7e-122 407.5 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|325967703|ref|YP_004243895.1| - 2.8e-06 26.8 0.0 4.5e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|325967703|ref|YP_004243895.1| - 3.6e-06 26.2 0.3 6.4e-05 22.1 0.1 2.1 2 0 0 2 2 2 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|325967703|ref|YP_004243895.1| - 5.5e-06 25.8 0.2 1.3e-05 24.5 0.0 1.8 2 1 0 2 2 2 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|325967703|ref|YP_004243895.1| - 5.4e-05 21.9 0.1 8.6e-05 21.2 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Cren7 PF11520.8 gi|325967704|ref|YP_004243896.1| - 4.7e-13 48.8 0.9 5.8e-13 48.5 0.9 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 ANAPC4_WD40 PF12894.7 gi|325967704|ref|YP_004243896.1| - 0.045 14.1 0.0 0.053 13.8 0.0 1.1 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 4 WD40 domain PRC PF05239.16 gi|325967705|ref|YP_004243897.1| - 2.1e-05 24.5 1.4 4.6e-05 23.4 1.4 1.6 1 0 0 1 1 1 1 PRC-barrel domain ISG65-75 PF11727.8 gi|325967705|ref|YP_004243897.1| - 0.00013 21.3 0.3 0.00016 21.0 0.3 1.1 1 0 0 1 1 1 1 Invariant surface glycoprotein CdvA PF18822.1 gi|325967705|ref|YP_004243897.1| - 0.00084 19.2 9.4 0.033 14.0 7.2 2.2 1 1 1 2 2 2 1 CdvA-like coiled-coil domain SesA PF17107.5 gi|325967705|ref|YP_004243897.1| - 0.019 15.1 1.6 0.16 12.2 0.8 2.1 1 1 1 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases CorA PF01544.18 gi|325967705|ref|YP_004243897.1| - 0.023 14.0 6.1 0.033 13.5 6.1 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4140 PF13600.6 gi|325967705|ref|YP_004243897.1| - 0.03 14.8 3.5 3.2 8.3 0.0 3.0 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) TBK1_CCD1 PF18394.1 gi|325967705|ref|YP_004243897.1| - 0.032 13.8 2.7 0.056 13.0 0.8 2.0 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 Glycoprot_B_PH2 PF17417.2 gi|325967705|ref|YP_004243897.1| - 0.035 14.4 0.0 0.076 13.4 0.0 1.6 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B PH-like domain Rx_N PF18052.1 gi|325967705|ref|YP_004243897.1| - 0.035 14.4 5.8 0.65 10.3 4.3 3.0 1 1 1 2 2 2 0 Rx N-terminal domain NPV_P10 PF05531.12 gi|325967705|ref|YP_004243897.1| - 0.036 14.5 4.4 13 6.4 4.4 3.1 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Arch_flagellin PF01917.16 gi|325967705|ref|YP_004243897.1| - 0.04 14.1 1.6 0.054 13.7 1.2 1.5 1 1 0 1 1 1 0 Archaebacterial flagellin V_ATPase_I PF01496.19 gi|325967705|ref|YP_004243897.1| - 0.045 11.7 1.3 0.056 11.4 1.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Spc7 PF08317.11 gi|325967705|ref|YP_004243897.1| - 0.05 12.5 5.0 0.05 12.5 3.7 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF948 PF06103.11 gi|325967705|ref|YP_004243897.1| - 0.062 13.6 0.6 5.9 7.2 0.1 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) MlaD PF02470.20 gi|325967705|ref|YP_004243897.1| - 0.063 13.6 0.3 0.1 12.9 0.3 1.4 1 0 0 1 1 1 0 MlaD protein TolA_bind_tri PF16331.5 gi|325967705|ref|YP_004243897.1| - 0.076 13.1 5.5 2.8 8.1 0.0 3.4 2 1 2 4 4 4 0 TolA binding protein trimerisation Tnp_22_trimer PF17489.2 gi|325967705|ref|YP_004243897.1| - 0.099 12.6 2.3 0.17 11.9 1.1 2.0 1 1 0 1 1 1 0 L1 transposable element trimerization domain Snapin_Pallidin PF14712.6 gi|325967705|ref|YP_004243897.1| - 0.15 12.5 8.1 0.37 11.2 0.1 3.0 3 0 0 3 3 3 0 Snapin/Pallidin Stathmin PF00836.19 gi|325967705|ref|YP_004243897.1| - 0.21 11.6 1.9 0.47 10.4 1.0 2.0 2 0 0 2 2 2 0 Stathmin family MukB PF04310.12 gi|325967705|ref|YP_004243897.1| - 0.22 11.3 2.5 0.094 12.5 0.4 1.4 2 0 0 2 2 2 0 MukB N-terminal Ribosomal_L29 PF00831.23 gi|325967705|ref|YP_004243897.1| - 0.29 11.1 3.1 1.9 8.5 1.6 2.7 1 1 1 2 2 2 0 Ribosomal L29 protein Baculo_p24 PF05073.12 gi|325967705|ref|YP_004243897.1| - 0.31 10.8 4.1 1.7 8.4 0.5 2.2 1 1 1 2 2 2 0 Baculovirus P24 capsid protein Latarcin PF10279.9 gi|325967705|ref|YP_004243897.1| - 0.57 10.6 3.5 11 6.5 0.2 2.6 2 1 0 2 2 2 0 Latarcin precursor FliX PF10768.9 gi|325967705|ref|YP_004243897.1| - 0.75 10.3 5.0 0.33 11.5 2.0 1.9 1 1 1 2 2 2 0 Class II flagellar assembly regulator V-SNARE_C PF12352.8 gi|325967705|ref|YP_004243897.1| - 2.6 8.4 5.9 5.8 7.3 0.1 2.9 3 0 0 3 3 3 0 Snare region anchored in the vesicle membrane C-terminus CCDC-167 PF15188.6 gi|325967705|ref|YP_004243897.1| - 4.9 7.6 11.3 2.9 8.3 5.0 2.6 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 Nnf1 PF03980.14 gi|325967705|ref|YP_004243897.1| - 5.3 7.5 9.0 7.8 6.9 1.5 2.6 1 1 1 2 2 2 0 Nnf1 Lar_restr_allev PF14354.6 gi|325967706|ref|YP_004243898.1| - 0.0017 18.7 0.1 0.002 18.5 0.1 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-trcl PF13451.6 gi|325967706|ref|YP_004243898.1| - 0.0039 17.0 1.6 0.11 12.4 0.0 2.1 2 0 0 2 2 2 1 Probable zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|325967706|ref|YP_004243898.1| - 0.0063 16.3 0.9 1.1 9.2 0.1 2.2 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS A2L_zn_ribbon PF08792.10 gi|325967706|ref|YP_004243898.1| - 0.098 12.4 1.8 2.5 7.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF3797 PF12677.7 gi|325967706|ref|YP_004243898.1| - 0.13 12.2 1.7 2 8.3 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Cys_rich_KTR PF14205.6 gi|325967706|ref|YP_004243898.1| - 0.31 10.9 2.4 1.2 9.0 2.4 1.9 1 1 0 1 1 1 0 Cysteine-rich KTR RimK PF08443.11 gi|325967707|ref|YP_004243899.1| - 3.6e-25 88.7 0.0 4.5e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|325967707|ref|YP_004243899.1| - 2.1e-15 56.5 0.2 1.1e-14 54.3 0.1 1.9 2 0 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|325967707|ref|YP_004243899.1| - 1e-09 38.7 0.1 1.5e-09 38.1 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|325967707|ref|YP_004243899.1| - 3e-08 33.3 0.4 5.2e-05 22.7 0.0 3.0 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|325967707|ref|YP_004243899.1| - 3.3e-06 26.5 0.1 0.0065 15.7 0.0 2.9 1 1 1 2 2 2 2 YheC/D like ATP-grasp FtsL PF04999.13 gi|325967708|ref|YP_004243900.1| - 0.72 9.9 6.6 3.4 7.7 0.1 3.2 3 0 0 3 3 3 0 Cell division protein FtsL Voltage_CLC PF00654.20 gi|325967708|ref|YP_004243900.1| - 0.82 8.8 15.9 1.1 8.5 15.9 1.0 1 0 0 1 1 1 0 Voltage gated chloride channel SirB PF04247.12 gi|325967708|ref|YP_004243900.1| - 5.1 7.2 14.5 2.3 8.3 8.2 2.7 2 1 0 2 2 2 0 Invasion gene expression up-regulator, SirB DUF1129 PF06570.11 gi|325967708|ref|YP_004243900.1| - 8.4 5.8 14.8 0.93 8.9 9.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) zf-ribbon_3 PF13248.6 gi|325967709|ref|YP_004243901.1| - 0.00092 18.5 1.8 0.49 9.9 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF3797 PF12677.7 gi|325967709|ref|YP_004243901.1| - 0.0053 16.6 1.0 1.8 8.5 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3797) IBR PF01485.21 gi|325967709|ref|YP_004243901.1| - 0.0059 16.8 0.2 0.0076 16.5 0.2 1.1 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain NRDD PF13597.6 gi|325967709|ref|YP_004243901.1| - 0.009 14.8 0.2 0.0096 14.7 0.2 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_2 PF13240.6 gi|325967709|ref|YP_004243901.1| - 0.0096 15.6 1.6 1.3 8.9 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|325967709|ref|YP_004243901.1| - 0.02 14.8 0.8 0.21 11.5 0.8 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 gi|325967709|ref|YP_004243901.1| - 0.024 14.6 0.9 2.6 8.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|325967709|ref|YP_004243901.1| - 0.03 14.3 0.6 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|325967709|ref|YP_004243901.1| - 0.038 14.1 0.3 6.2 7.0 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|325967709|ref|YP_004243901.1| - 0.045 13.9 1.0 4.3 7.6 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf_Rg PF17915.1 gi|325967709|ref|YP_004243901.1| - 0.051 13.0 0.7 0.95 8.9 0.0 2.1 2 0 0 2 2 2 0 Reverse gyrase zinc finger UPF0547 PF10571.9 gi|325967709|ref|YP_004243901.1| - 0.057 13.5 3.0 2.1 8.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin PF00301.20 gi|325967709|ref|YP_004243901.1| - 0.059 13.4 0.6 3.1 7.9 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.7 gi|325967709|ref|YP_004243901.1| - 0.065 13.3 1.6 1.3 9.1 1.7 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-ACC PF17848.1 gi|325967709|ref|YP_004243901.1| - 0.086 12.9 2.6 1.9 8.6 0.2 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 gi|325967709|ref|YP_004243901.1| - 0.11 12.6 1.3 0.46 10.6 0.0 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.6 gi|325967709|ref|YP_004243901.1| - 0.11 11.8 0.9 8.5 5.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-H2C2_2 PF13465.6 gi|325967709|ref|YP_004243901.1| - 0.27 11.7 3.0 9.7 6.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.12 gi|325967709|ref|YP_004243901.1| - 0.3 10.7 2.8 3.8 7.1 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|325967709|ref|YP_004243901.1| - 6 6.6 8.3 18 5.1 0.2 3.1 2 2 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Tic22 PF04278.12 gi|325967711|ref|YP_004243903.1| - 0.0061 16.0 0.2 0.007 15.8 0.2 1.1 1 0 0 1 1 1 1 Tic22-like family SspH PF08141.12 gi|325967711|ref|YP_004243903.1| - 0.018 15.2 0.6 0.082 13.0 0.5 2.0 2 0 0 2 2 2 0 Small acid-soluble spore protein H family PHB_acc_N PF07879.11 gi|325967711|ref|YP_004243903.1| - 0.039 14.0 1.7 0.83 9.8 0.2 2.7 3 1 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain FRG1 PF06229.12 gi|325967711|ref|YP_004243903.1| - 0.079 12.7 0.3 0.09 12.5 0.3 1.1 1 0 0 1 1 1 0 FRG1-like domain PfkB PF00294.24 gi|325967713|ref|YP_004243905.1| - 5.5e-14 52.2 0.0 2.1e-13 50.2 0.0 1.8 1 1 0 1 1 1 1 pfkB family carbohydrate kinase NleF_casp_inhib PF16809.5 gi|325967713|ref|YP_004243905.1| - 0.024 14.6 0.1 0.046 13.6 0.1 1.4 1 0 0 1 1 1 0 NleF caspase inhibitor Peptidase_M24 PF00557.24 gi|325967715|ref|YP_004243907.1| - 2.3e-60 203.8 0.3 2.9e-60 203.5 0.3 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|325967715|ref|YP_004243907.1| - 2.2e-06 28.4 0.0 4.4e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain HD PF01966.22 gi|325967716|ref|YP_004243908.1| - 2.8e-09 37.2 0.3 8.5e-09 35.7 0.3 1.9 1 0 0 1 1 1 1 HD domain NUC130_3NT PF08158.12 gi|325967716|ref|YP_004243908.1| - 0.66 10.3 2.7 7.9 6.9 0.2 3.3 3 0 0 3 3 3 0 NUC130/3NT domain Lycopene_cycl PF05834.12 gi|325967717|ref|YP_004243909.1| - 1e-07 31.3 0.1 0.011 14.7 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|325967717|ref|YP_004243909.1| - 1.6e-06 27.7 1.2 0.00063 19.1 0.0 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|325967717|ref|YP_004243909.1| - 2.2e-06 27.5 0.1 0.027 14.1 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|325967717|ref|YP_004243909.1| - 0.00018 20.8 0.2 0.00047 19.5 0.0 1.7 2 0 0 2 2 2 1 Thi4 family SE PF08491.10 gi|325967717|ref|YP_004243909.1| - 0.0039 16.3 0.1 0.006 15.7 0.1 1.3 1 0 0 1 1 1 1 Squalene epoxidase NAD_binding_8 PF13450.6 gi|325967717|ref|YP_004243909.1| - 0.0046 17.2 0.0 0.018 15.2 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|325967717|ref|YP_004243909.1| - 0.0048 15.6 0.0 0.0084 14.9 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|325967717|ref|YP_004243909.1| - 0.0091 15.3 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|325967717|ref|YP_004243909.1| - 0.011 14.6 0.0 1.9 7.2 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase TrkA_N PF02254.18 gi|325967717|ref|YP_004243909.1| - 0.091 13.0 0.1 0.21 11.8 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_3 PF13738.6 gi|325967717|ref|YP_004243909.1| - 0.13 11.5 0.1 0.24 10.6 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|325967717|ref|YP_004243909.1| - 0.15 12.0 0.0 0.35 10.8 0.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding SeqA_N PF17206.3 gi|325967717|ref|YP_004243909.1| - 0.17 11.2 0.5 2.2 7.7 0.1 2.6 2 0 0 2 2 2 0 SeqA protein N-terminal domain tRNA-synt_1b PF00579.25 gi|325967718|ref|YP_004243910.1| - 1.8e-39 135.9 0.0 2.5e-39 135.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Methyltrn_RNA_2 PF04013.12 gi|325967718|ref|YP_004243910.1| - 0.048 13.4 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase DUF371 PF04027.13 gi|325967719|ref|YP_004243911.1| - 3.3e-50 169.5 0.3 3.8e-50 169.3 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) ERGIC_N PF13850.6 gi|325967720|ref|YP_004243912.1| - 0.054 13.9 1.3 0.23 11.8 0.2 2.3 2 0 0 2 2 2 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) HemY_N PF07219.13 gi|325967720|ref|YP_004243912.1| - 8.5 6.6 7.7 8.9 6.6 1.8 2.7 2 0 0 2 2 2 0 HemY protein N-terminus IlvN PF07991.12 gi|325967721|ref|YP_004243913.1| - 3.5e-56 189.3 0.0 5.3e-56 188.7 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|325967721|ref|YP_004243913.1| - 3.2e-33 115.0 0.0 4.8e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|325967721|ref|YP_004243913.1| - 3.2e-09 37.2 0.0 5.4e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|325967721|ref|YP_004243913.1| - 2.9e-07 31.0 0.0 6.1e-07 29.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|325967721|ref|YP_004243913.1| - 5.4e-06 25.9 0.0 1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|325967721|ref|YP_004243913.1| - 7.5e-06 26.1 0.1 1.8e-05 24.8 0.1 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Rossmann-like PF10727.9 gi|325967721|ref|YP_004243913.1| - 0.0016 18.3 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Rossmann-like domain CoA_binding PF02629.19 gi|325967721|ref|YP_004243913.1| - 0.031 14.9 0.1 0.076 13.7 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|325967721|ref|YP_004243913.1| - 0.22 11.5 0.3 17 5.4 0.1 2.4 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Porphobil_deam PF01379.20 gi|325967722|ref|YP_004243914.1| - 5e-67 225.4 0.0 6.1e-67 225.1 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|325967722|ref|YP_004243914.1| - 8.2e-15 55.0 0.0 1.4e-14 54.2 0.0 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.20 gi|325967722|ref|YP_004243914.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 AAA_18 PF13238.6 gi|325967723|ref|YP_004243915.1| - 3.7e-05 24.3 0.4 0.00013 22.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|325967723|ref|YP_004243915.1| - 0.00018 21.9 0.0 0.0011 19.4 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325967723|ref|YP_004243915.1| - 0.00083 19.8 0.0 0.006 17.0 0.0 2.3 2 1 1 3 3 3 1 AAA ATPase domain ATPase_2 PF01637.18 gi|325967723|ref|YP_004243915.1| - 0.015 15.2 5.1 0.11 12.4 0.0 2.8 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|325967723|ref|YP_004243915.1| - 0.06 13.6 0.0 0.27 11.5 0.0 2.1 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|325967723|ref|YP_004243915.1| - 0.075 13.1 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain CAMSAP_CKK PF08683.11 gi|325967723|ref|YP_004243915.1| - 0.095 12.8 0.2 1.2 9.3 0.1 2.3 2 0 0 2 2 2 0 Microtubule-binding calmodulin-regulated spectrin-associated HTH_23 PF13384.6 gi|325967724|ref|YP_004243916.1| - 2e-07 30.6 0.0 3.6e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|325967724|ref|YP_004243916.1| - 1.3e-06 28.0 0.2 3.5e-06 26.6 0.0 1.9 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|325967724|ref|YP_004243916.1| - 1.6e-05 24.9 0.0 2.8e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|325967724|ref|YP_004243916.1| - 5.6e-05 23.5 0.1 0.00012 22.4 0.0 1.6 1 1 1 2 2 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|325967724|ref|YP_004243916.1| - 0.00011 22.0 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.6 gi|325967724|ref|YP_004243916.1| - 0.0002 20.8 0.1 0.0011 18.4 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|325967724|ref|YP_004243916.1| - 0.00049 20.0 0.1 0.0016 18.3 0.0 1.9 2 0 0 2 2 2 1 HTH domain DUF3688 PF12461.8 gi|325967724|ref|YP_004243916.1| - 0.00074 18.1 1.0 0.00074 18.1 1.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3688) HTH_17 PF12728.7 gi|325967724|ref|YP_004243916.1| - 0.00091 19.4 0.0 0.0022 18.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|325967724|ref|YP_004243916.1| - 0.0026 17.5 0.1 0.0077 16.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain GerE PF00196.19 gi|325967724|ref|YP_004243916.1| - 0.0027 17.2 0.0 0.0055 16.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TnsD PF15978.5 gi|325967724|ref|YP_004243916.1| - 0.0029 16.7 0.1 0.0034 16.4 0.1 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_Tnp_1 PF01527.20 gi|325967724|ref|YP_004243916.1| - 0.0042 17.4 0.0 0.0078 16.5 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_30 PF13556.6 gi|325967724|ref|YP_004243916.1| - 0.0048 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.6 gi|325967724|ref|YP_004243916.1| - 0.0051 16.8 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|325967724|ref|YP_004243916.1| - 0.0065 16.0 0.0 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 UPF0122 PF04297.14 gi|325967724|ref|YP_004243916.1| - 0.0087 16.3 2.1 0.011 16.0 0.3 1.9 1 1 1 2 2 2 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_22 PF13309.6 gi|325967724|ref|YP_004243916.1| - 0.0087 16.1 0.1 0.05 13.7 0.0 2.2 2 0 0 2 2 2 1 HTH domain RPA_C PF08784.11 gi|325967724|ref|YP_004243916.1| - 0.012 16.3 0.3 0.068 13.8 0.0 2.3 2 1 1 3 3 3 0 Replication protein A C terminal Sigma70_ECF PF07638.11 gi|325967724|ref|YP_004243916.1| - 0.014 15.3 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_3 PF01381.22 gi|325967724|ref|YP_004243916.1| - 0.021 14.9 0.5 0.08 13.0 0.0 2.2 3 0 0 3 3 1 0 Helix-turn-helix HTH_7 PF02796.15 gi|325967724|ref|YP_004243916.1| - 0.028 14.5 0.0 0.064 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_36 PF13730.6 gi|325967724|ref|YP_004243916.1| - 0.031 14.2 0.0 0.094 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|325967724|ref|YP_004243916.1| - 0.033 14.4 0.1 0.2 11.9 0.1 2.4 1 0 0 1 1 1 0 NUMOD1 domain HTH_8 PF02954.19 gi|325967724|ref|YP_004243916.1| - 0.034 13.9 0.0 0.068 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF5012 PF16404.5 gi|325967724|ref|YP_004243916.1| - 0.041 14.0 0.1 0.079 13.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5012) DUF746 PF05344.11 gi|325967724|ref|YP_004243916.1| - 0.044 13.6 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) Wtap PF17098.5 gi|325967724|ref|YP_004243916.1| - 0.055 13.4 0.1 0.2 11.6 0.0 1.8 2 0 0 2 2 2 0 WTAP/Mum2p family HTH_Tnp_1_2 PF13022.6 gi|325967724|ref|YP_004243916.1| - 0.057 13.6 0.2 0.11 12.6 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TPR_MLP1_2 PF07926.12 gi|325967724|ref|YP_004243916.1| - 0.062 13.4 1.6 0.56 10.3 0.1 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Mga PF05043.13 gi|325967724|ref|YP_004243916.1| - 0.063 13.9 0.1 0.14 12.8 0.1 1.6 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_10 PF04967.12 gi|325967724|ref|YP_004243916.1| - 0.071 12.9 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain POTRA_1 PF08478.10 gi|325967724|ref|YP_004243916.1| - 0.078 13.3 0.1 0.54 10.6 0.0 2.3 2 0 0 2 2 2 0 POTRA domain, FtsQ-type TrmB PF01978.19 gi|325967724|ref|YP_004243916.1| - 0.098 12.6 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Asparaginase_2 PF01112.18 gi|325967725|ref|YP_004243917.1| - 4.2e-85 285.5 4.1 4.9e-85 285.2 4.1 1.0 1 0 0 1 1 1 1 Asparaginase Spc42p PF11544.8 gi|325967725|ref|YP_004243917.1| - 0.064 13.3 1.7 0.12 12.4 1.7 1.3 1 0 0 1 1 1 0 Spindle pole body component Spc42p Amidohydro_1 PF01979.20 gi|325967726|ref|YP_004243918.1| - 8.8e-56 189.7 0.0 1e-55 189.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|325967726|ref|YP_004243918.1| - 1.2e-14 54.7 0.1 3.6e-10 39.9 0.0 2.4 2 1 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|325967726|ref|YP_004243918.1| - 0.00018 20.9 0.0 0.00028 20.3 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Diphthami_syn_2 PF01902.17 gi|325967727|ref|YP_004243919.1| - 4.7e-53 179.9 0.0 5.3e-53 179.8 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|325967727|ref|YP_004243919.1| - 0.017 14.6 0.0 0.044 13.3 0.0 1.8 2 1 0 2 2 2 0 Queuosine biosynthesis protein QueC RNA_pol_Rpb1_3 PF04983.18 gi|325967727|ref|YP_004243919.1| - 0.15 12.0 0.0 0.53 10.2 0.0 1.9 2 1 0 2 2 2 0 RNA polymerase Rpb1, domain 3 zinc_ribbon_4 PF13717.6 gi|325967728|ref|YP_004243920.1| - 1.3e-06 28.2 0.4 0.019 14.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|325967728|ref|YP_004243920.1| - 2.9e-05 23.3 1.3 0.16 11.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|325967728|ref|YP_004243920.1| - 6.9e-05 22.9 0.1 0.16 12.0 0.0 2.1 2 0 0 2 2 2 2 CpXC protein Cys_rich_CPXG PF14255.6 gi|325967728|ref|YP_004243920.1| - 0.00015 21.6 1.6 0.03 14.2 0.2 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf_UBZ PF18439.1 gi|325967728|ref|YP_004243920.1| - 0.0002 20.8 0.9 0.019 14.5 0.1 2.4 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-H2C2_2 PF13465.6 gi|325967728|ref|YP_004243920.1| - 0.00036 20.8 0.3 0.43 11.1 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Zn-ribbon_8 PF09723.10 gi|325967728|ref|YP_004243920.1| - 0.00054 20.0 1.0 0.0013 18.8 1.0 1.6 1 1 0 1 1 1 1 Zinc ribbon domain UPF0547 PF10571.9 gi|325967728|ref|YP_004243920.1| - 0.00057 19.9 2.4 0.096 12.8 0.6 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.6 gi|325967728|ref|YP_004243920.1| - 0.0011 18.9 3.9 0.24 11.4 0.4 2.3 2 0 0 2 2 2 2 zinc-finger of a C2HC-type zf-Di19 PF05605.12 gi|325967728|ref|YP_004243920.1| - 0.0011 19.3 1.1 0.62 10.4 0.2 2.1 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_9 PF14369.6 gi|325967728|ref|YP_004243920.1| - 0.0013 18.9 0.3 1.3 9.3 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon zf-BED PF02892.15 gi|325967728|ref|YP_004243920.1| - 0.0018 18.3 0.5 1.7 8.7 0.0 2.2 2 0 0 2 2 2 2 BED zinc finger HypA PF01155.19 gi|325967728|ref|YP_004243920.1| - 0.0024 17.9 0.1 0.0033 17.4 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA YacG PF03884.14 gi|325967728|ref|YP_004243920.1| - 0.0031 17.2 0.6 1.2 9.0 0.1 2.2 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG TerY_C PF15616.6 gi|325967728|ref|YP_004243920.1| - 0.004 17.3 0.2 0.0083 16.2 0.2 1.5 1 1 0 1 1 1 1 TerY-C metal binding domain zf-AN1 PF01428.16 gi|325967728|ref|YP_004243920.1| - 0.0041 17.2 1.0 2.1 8.6 0.1 2.1 2 0 0 2 2 2 1 AN1-like Zinc finger FYDLN_acid PF09538.10 gi|325967728|ref|YP_004243920.1| - 0.0042 17.7 0.5 1.7 9.4 0.1 2.1 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) zf-CHCC PF10276.9 gi|325967728|ref|YP_004243920.1| - 0.0045 17.0 2.1 0.34 11.0 0.3 2.3 2 0 0 2 2 2 1 Zinc-finger domain Zn_Tnp_IS1595 PF12760.7 gi|325967728|ref|YP_004243920.1| - 0.0049 16.8 3.7 0.42 10.6 0.1 2.2 1 1 1 2 2 2 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|325967728|ref|YP_004243920.1| - 0.006 16.9 0.8 0.0079 16.6 0.8 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.7 gi|325967728|ref|YP_004243920.1| - 0.006 16.6 0.1 0.0094 16.0 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_5 PF13719.6 gi|325967728|ref|YP_004243920.1| - 0.0064 16.2 1.0 0.022 14.5 1.0 1.8 1 1 0 1 1 1 1 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|325967728|ref|YP_004243920.1| - 0.0064 17.2 2.4 2.4 9.2 0.2 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger ADK_lid PF05191.14 gi|325967728|ref|YP_004243920.1| - 0.01 15.8 0.4 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.12 gi|325967728|ref|YP_004243920.1| - 0.011 15.6 0.7 0.51 10.3 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon IBR PF01485.21 gi|325967728|ref|YP_004243920.1| - 0.013 15.7 1.2 0.023 14.9 1.2 1.6 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain DUF983 PF06170.12 gi|325967728|ref|YP_004243920.1| - 0.013 15.9 0.1 2.1 8.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zinc_ribbon_2 PF13240.6 gi|325967728|ref|YP_004243920.1| - 0.014 15.1 7.1 0.67 9.7 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|325967728|ref|YP_004243920.1| - 0.014 15.7 0.2 4.3 7.8 0.0 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.19 gi|325967728|ref|YP_004243920.1| - 0.016 15.0 1.0 0.99 9.2 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|325967728|ref|YP_004243920.1| - 0.016 15.9 0.2 5.3 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TFIIS_C PF01096.18 gi|325967728|ref|YP_004243920.1| - 0.016 15.1 1.7 2 8.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) E7 PF00527.18 gi|325967728|ref|YP_004243920.1| - 0.016 15.4 0.2 4.4 7.6 0.0 2.1 1 1 1 2 2 2 0 E7 protein, Early protein zf-TFIIB PF13453.6 gi|325967728|ref|YP_004243920.1| - 0.016 14.5 0.1 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|325967728|ref|YP_004243920.1| - 0.017 14.6 4.5 0.12 11.9 4.5 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zf-DNL PF05180.12 gi|325967728|ref|YP_004243920.1| - 0.02 14.8 0.3 0.026 14.5 0.3 1.2 1 0 0 1 1 1 0 DNL zinc finger Prok-RING_1 PF14446.6 gi|325967728|ref|YP_004243920.1| - 0.023 14.6 1.1 0.077 12.9 1.1 1.8 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_7 PF02591.15 gi|325967728|ref|YP_004243920.1| - 0.024 14.8 0.6 5.1 7.4 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF3268 PF11672.8 gi|325967728|ref|YP_004243920.1| - 0.028 14.8 0.5 0.037 14.4 0.5 1.3 1 0 0 1 1 1 0 zinc-finger-containing domain Elf1 PF05129.13 gi|325967728|ref|YP_004243920.1| - 0.029 14.4 0.0 0.046 13.8 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Ogr_Delta PF04606.12 gi|325967728|ref|YP_004243920.1| - 0.03 14.3 1.3 5.7 7.0 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Nudix_N_2 PF14803.6 gi|325967728|ref|YP_004243920.1| - 0.031 14.2 1.5 2.2 8.3 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Anti-TRAP PF15777.5 gi|325967728|ref|YP_004243920.1| - 0.035 14.1 0.1 0.048 13.6 0.1 1.3 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C2H2 PF00096.26 gi|325967728|ref|YP_004243920.1| - 0.038 14.5 6.2 1.6 9.4 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type XPA_N PF01286.18 gi|325967728|ref|YP_004243920.1| - 0.039 14.0 0.2 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 XPA protein N-terminal CxC7 PF18866.1 gi|325967728|ref|YP_004243920.1| - 0.04 14.1 1.3 0.74 10.0 0.2 2.1 1 1 1 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases Rad50_zn_hook PF04423.14 gi|325967728|ref|YP_004243920.1| - 0.043 13.7 0.1 4.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif YhfH PF14149.6 gi|325967728|ref|YP_004243920.1| - 0.052 13.5 2.2 5.4 7.1 0.2 2.3 2 0 0 2 2 2 0 YhfH-like protein T4_baseplate PF12322.8 gi|325967728|ref|YP_004243920.1| - 0.059 12.8 0.2 1.9 7.9 0.1 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein DNA_ligase_ZBD PF03119.16 gi|325967728|ref|YP_004243920.1| - 0.07 13.2 0.9 11 6.1 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Sgf11 PF08209.11 gi|325967728|ref|YP_004243920.1| - 0.084 12.5 1.0 1.1 8.9 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) NRDD PF13597.6 gi|325967728|ref|YP_004243920.1| - 0.092 11.5 0.3 0.11 11.3 0.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-C2H2_12 PF18112.1 gi|325967728|ref|YP_004243920.1| - 0.13 12.8 5.0 2.8 8.5 0.5 2.4 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain DUF35_N PF12172.8 gi|325967728|ref|YP_004243920.1| - 0.14 12.1 2.0 8.2 6.4 0.1 2.6 3 0 0 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2256 PF10013.9 gi|325967728|ref|YP_004243920.1| - 0.15 12.2 1.5 14 5.9 0.2 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Acetone_carb_G PF08882.11 gi|325967728|ref|YP_004243920.1| - 0.15 12.2 1.2 1.5 9.0 0.1 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit DUF4379 PF14311.6 gi|325967728|ref|YP_004243920.1| - 0.28 11.6 3.0 3 8.3 4.2 2.1 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zf-tcix PF14952.6 gi|325967728|ref|YP_004243920.1| - 0.3 10.7 4.0 5.2 6.8 0.3 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.11 gi|325967728|ref|YP_004243920.1| - 0.6 10.1 3.4 6.3 6.8 0.2 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|325967728|ref|YP_004243920.1| - 0.65 9.5 5.1 4.9 6.7 0.3 2.2 1 1 0 2 2 2 0 Mu-like prophage protein Com zf-C2H2_6 PF13912.6 gi|325967728|ref|YP_004243920.1| - 0.75 9.9 5.9 8.4 6.5 0.8 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2770 PF10968.8 gi|325967729|ref|YP_004243921.1| - 1.8 8.6 10.0 48 4.0 0.6 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF2770) Ldh_1_N PF00056.23 gi|325967730|ref|YP_004243922.1| - 3.2e-39 134.3 0.4 4.4e-39 133.8 0.4 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|325967730|ref|YP_004243922.1| - 6.1e-22 78.3 0.0 1.3e-21 77.3 0.0 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|325967730|ref|YP_004243922.1| - 0.00017 21.2 0.4 0.00034 20.2 0.4 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_hydro_4 PF02056.16 gi|325967730|ref|YP_004243922.1| - 0.00047 19.7 0.4 0.0017 17.9 0.1 2.0 1 1 1 2 2 2 1 Family 4 glycosyl hydrolase Anthrax_toxA PF03497.16 gi|325967730|ref|YP_004243922.1| - 0.013 15.6 0.0 2 8.5 0.0 2.3 2 0 0 2 2 2 0 Anthrax toxin LF subunit DUF2785 PF10978.8 gi|325967730|ref|YP_004243922.1| - 0.092 12.5 0.0 0.41 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2785) Sua5_yciO_yrdC PF01300.18 gi|325967731|ref|YP_004243923.1| - 8.3e-53 178.5 0.0 1.4e-52 177.8 0.0 1.4 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|325967731|ref|YP_004243923.1| - 5e-28 98.3 0.0 7e-28 97.9 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding FeS_assembly_P PF01883.19 gi|325967732|ref|YP_004243924.1| - 2.9e-17 62.6 0.2 3.7e-17 62.3 0.2 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|325967732|ref|YP_004243924.1| - 0.14 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 NifU-like domain NolV PF06635.12 gi|325967733|ref|YP_004243925.1| - 0.052 12.9 0.0 0.054 12.9 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein NolV TrmB PF01978.19 gi|325967734|ref|YP_004243926.1| - 2.2e-09 37.1 1.9 3.1e-09 36.6 0.4 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|325967734|ref|YP_004243926.1| - 1.1e-08 34.8 0.5 2.6e-08 33.6 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|325967734|ref|YP_004243926.1| - 5.2e-08 32.6 0.1 1.7e-07 31.0 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|325967734|ref|YP_004243926.1| - 9.6e-07 28.5 0.1 2.4e-06 27.2 0.1 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|325967734|ref|YP_004243926.1| - 1.3e-06 28.2 0.9 2.7e-06 27.2 0.1 1.9 2 0 0 2 2 1 1 HTH domain MarR PF01047.22 gi|325967734|ref|YP_004243926.1| - 1.5e-05 24.8 0.1 2.7e-05 24.0 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|325967734|ref|YP_004243926.1| - 1.6e-05 24.6 0.0 3.1e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|325967734|ref|YP_004243926.1| - 2.6e-05 24.1 0.1 5.2e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|325967734|ref|YP_004243926.1| - 2.7e-05 24.4 2.0 8e-05 22.9 0.2 2.4 2 1 1 3 3 2 1 Transcriptional regulator HTH_24 PF13412.6 gi|325967734|ref|YP_004243926.1| - 5.3e-05 22.7 0.1 0.00017 21.1 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|325967734|ref|YP_004243926.1| - 5.7e-05 22.7 1.4 8.9e-05 22.1 0.3 1.9 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|325967734|ref|YP_004243926.1| - 7.6e-05 22.7 0.2 0.00016 21.7 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|325967734|ref|YP_004243926.1| - 0.0003 20.7 0.1 0.00066 19.6 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|325967734|ref|YP_004243926.1| - 0.00033 20.1 0.4 0.00061 19.3 0.1 1.7 2 0 0 2 2 1 1 Sigma-70, region 4 Dimerisation2 PF16864.5 gi|325967734|ref|YP_004243926.1| - 0.00038 20.4 0.0 0.00088 19.2 0.0 1.6 2 0 0 2 2 1 1 Dimerisation domain Penicillinase_R PF03965.16 gi|325967734|ref|YP_004243926.1| - 0.00087 19.6 0.2 0.0012 19.2 0.2 1.2 1 0 0 1 1 1 1 Penicillinase repressor HrcA_DNA-bdg PF03444.15 gi|325967734|ref|YP_004243926.1| - 0.001 18.7 0.8 0.0074 15.9 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_40 PF14493.6 gi|325967734|ref|YP_004243926.1| - 0.0014 19.0 0.0 0.0032 17.9 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|325967734|ref|YP_004243926.1| - 0.0015 18.2 3.1 0.01 15.5 1.2 2.9 2 1 0 2 2 2 1 Sigma-70, region 4 Phage_rep_org_N PF09681.10 gi|325967734|ref|YP_004243926.1| - 0.002 18.0 1.4 0.96 9.4 0.1 2.2 1 1 1 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) Fe_dep_repress PF01325.19 gi|325967734|ref|YP_004243926.1| - 0.0025 18.0 0.1 0.0054 16.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.6 gi|325967734|ref|YP_004243926.1| - 0.0033 17.4 0.0 0.0056 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_9 PF08221.11 gi|325967734|ref|YP_004243926.1| - 0.0046 17.0 0.2 0.016 15.3 0.1 2.0 2 0 0 2 2 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_23 PF13384.6 gi|325967734|ref|YP_004243926.1| - 0.0061 16.3 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain RuvB_C PF05491.13 gi|325967734|ref|YP_004243926.1| - 0.0079 16.0 1.2 0.6 10.0 0.1 2.5 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_27 PF13463.6 gi|325967734|ref|YP_004243926.1| - 0.0098 16.4 0.1 0.026 15.0 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|325967734|ref|YP_004243926.1| - 0.016 14.9 0.0 0.061 13.1 0.0 2.0 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TnsD PF15978.5 gi|325967734|ref|YP_004243926.1| - 0.017 14.2 0.1 0.018 14.0 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D KorB PF08535.10 gi|325967734|ref|YP_004243926.1| - 0.019 15.0 0.2 0.057 13.5 0.1 1.7 1 1 1 2 2 2 0 KorB domain LexA_DNA_bind PF01726.16 gi|325967734|ref|YP_004243926.1| - 0.02 14.7 0.2 0.053 13.3 0.1 1.8 2 0 0 2 2 1 0 LexA DNA binding domain Sigma70_ECF PF07638.11 gi|325967734|ref|YP_004243926.1| - 0.034 14.1 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 ECF sigma factor DUF4423 PF14394.6 gi|325967734|ref|YP_004243926.1| - 0.039 13.7 0.2 0.077 12.7 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Phage_antitermQ PF06530.12 gi|325967734|ref|YP_004243926.1| - 0.039 13.8 0.9 0.06 13.3 0.2 1.6 2 0 0 2 2 2 0 Phage antitermination protein Q Replic_Relax PF13814.6 gi|325967734|ref|YP_004243926.1| - 0.044 13.8 0.1 0.055 13.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation RP-C PF03428.13 gi|325967734|ref|YP_004243926.1| - 0.052 13.2 0.1 0.1 12.3 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain IF2_N PF04760.15 gi|325967734|ref|YP_004243926.1| - 0.061 13.1 0.6 0.66 9.8 0.1 2.5 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF2250 PF10007.9 gi|325967734|ref|YP_004243926.1| - 0.068 13.3 1.9 2.2 8.5 0.1 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_CodY PF08222.11 gi|325967734|ref|YP_004243926.1| - 0.069 12.7 0.1 0.33 10.5 0.0 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain PCI PF01399.27 gi|325967734|ref|YP_004243926.1| - 0.56 10.7 3.6 0.52 10.9 1.1 2.0 2 0 0 2 2 2 0 PCI domain OCD_Mu_crystall PF02423.15 gi|325967735|ref|YP_004243927.1| - 1.7e-72 244.0 3.3 2.1e-72 243.8 3.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|325967735|ref|YP_004243927.1| - 3e-12 46.8 0.5 5.1e-12 46.0 0.5 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|325967735|ref|YP_004243927.1| - 0.0044 16.3 1.2 0.0044 16.3 1.2 1.9 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Semialdhyde_dh PF01118.24 gi|325967735|ref|YP_004243927.1| - 0.019 15.4 0.0 0.036 14.5 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DUF3027 PF11228.8 gi|325967736|ref|YP_004243928.1| - 0.011 15.8 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3027) HPIP_like PF18524.1 gi|325967736|ref|YP_004243928.1| - 0.014 15.1 0.4 0.014 15.1 0.4 1.9 2 1 0 2 2 2 0 High potential iron-sulfur protein like Prok-RING_1 PF14446.6 gi|325967736|ref|YP_004243928.1| - 0.035 14.0 3.7 2.9 7.9 0.6 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-B_box PF00643.24 gi|325967736|ref|YP_004243928.1| - 0.2 11.8 0.1 0.2 11.8 0.1 2.4 2 1 0 2 2 2 0 B-box zinc finger C1_2 PF03107.16 gi|325967736|ref|YP_004243928.1| - 0.23 11.8 0.5 0.23 11.8 0.5 3.2 3 0 0 3 3 3 0 C1 domain Peptidase_S9 PF00326.21 gi|325967737|ref|YP_004243929.1| - 1.5e-11 44.2 0.0 2.2e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|325967737|ref|YP_004243929.1| - 1.5e-10 40.8 0.0 0.00012 21.4 0.0 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|325967737|ref|YP_004243929.1| - 2.7e-08 34.7 0.0 2.2e-07 31.7 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|325967737|ref|YP_004243929.1| - 6.4e-08 32.5 0.0 3.8e-05 23.5 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_5 PF12695.7 gi|325967737|ref|YP_004243929.1| - 9.4e-08 32.0 0.0 0.0032 17.3 0.1 2.1 1 1 0 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|325967737|ref|YP_004243929.1| - 2.7e-07 30.6 0.4 0.0023 17.8 0.0 2.7 2 1 1 3 3 3 2 Phospholipase/Carboxylesterase Abhydrolase_3 PF07859.13 gi|325967737|ref|YP_004243929.1| - 2.9e-06 27.3 0.0 6.5e-06 26.1 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold FSH1 PF03959.13 gi|325967737|ref|YP_004243929.1| - 4.4e-06 26.5 0.0 9.2e-06 25.5 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Lipase_3 PF01764.25 gi|325967737|ref|YP_004243929.1| - 6.1e-06 26.1 0.0 9.5e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 3) DLH PF01738.18 gi|325967737|ref|YP_004243929.1| - 1.2e-05 24.9 0.0 6.2e-05 22.6 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|325967737|ref|YP_004243929.1| - 1.3e-05 25.3 0.1 5.6e-05 23.2 0.1 1.9 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal UPF0227 PF05728.12 gi|325967737|ref|YP_004243929.1| - 0.00011 22.2 0.1 0.0007 19.6 0.1 2.1 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0227) Ser_hydrolase PF06821.13 gi|325967737|ref|YP_004243929.1| - 0.0002 21.2 0.0 0.00032 20.6 0.0 1.4 1 1 0 1 1 1 1 Serine hydrolase Esterase PF00756.20 gi|325967737|ref|YP_004243929.1| - 0.00028 20.6 0.0 0.00044 20.0 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Peptidase_S15 PF02129.18 gi|325967737|ref|YP_004243929.1| - 0.00039 20.1 0.0 0.76 9.3 0.0 2.1 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DUF2974 PF11187.8 gi|325967737|ref|YP_004243929.1| - 0.00051 19.7 0.0 0.00066 19.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Thioesterase PF00975.20 gi|325967737|ref|YP_004243929.1| - 0.00073 19.7 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain PGAP1 PF07819.13 gi|325967737|ref|YP_004243929.1| - 0.0027 17.5 0.0 0.0083 15.9 0.0 1.7 2 0 0 2 2 2 1 PGAP1-like protein Palm_thioest PF02089.15 gi|325967737|ref|YP_004243929.1| - 0.0068 16.3 0.0 0.34 10.7 0.0 2.1 2 0 0 2 2 2 1 Palmitoyl protein thioesterase PhoPQ_related PF10142.9 gi|325967737|ref|YP_004243929.1| - 0.0077 14.9 0.0 0.011 14.4 0.0 1.3 1 1 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein Asparaginase PF00710.20 gi|325967737|ref|YP_004243929.1| - 0.087 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Asparaginase, N-terminal LIP PF03583.14 gi|325967737|ref|YP_004243929.1| - 0.11 11.9 0.1 0.2 11.0 0.0 1.5 2 0 0 2 2 2 0 Secretory lipase DUF2048 PF09752.9 gi|325967737|ref|YP_004243929.1| - 0.14 11.2 0.1 0.22 10.6 0.1 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 LIDHydrolase PF10230.9 gi|325967737|ref|YP_004243929.1| - 0.15 11.5 0.0 5.6 6.4 0.0 2.1 2 0 0 2 2 2 0 Lipid-droplet associated hydrolase DUF829 PF05705.14 gi|325967737|ref|YP_004243929.1| - 0.2 11.5 0.0 0.96 9.3 0.0 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) MgtE PF01769.16 gi|325967738|ref|YP_004243930.1| - 1.9 8.9 6.5 2 8.8 0.6 2.3 1 1 1 2 2 2 0 Divalent cation transporter AA_kinase PF00696.28 gi|325967739|ref|YP_004243931.1| - 6.1e-32 111.1 0.0 7.2e-32 110.9 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.17 gi|325967740|ref|YP_004243932.1| - 8.7e-53 179.0 0.1 1.1e-52 178.6 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase RNase_PH_C PF03725.15 gi|325967740|ref|YP_004243932.1| - 0.069 13.2 0.4 0.17 11.9 0.4 1.6 1 0 0 1 1 1 0 3' exoribonuclease family, domain 2 Thiolase_N PF00108.23 gi|325967741|ref|YP_004243933.1| - 4.3e-77 259.0 0.0 5.4e-77 258.7 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|325967741|ref|YP_004243933.1| - 2.4e-42 143.4 0.6 7.1e-42 141.9 0.1 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|325967741|ref|YP_004243933.1| - 2.2e-05 24.1 0.3 4.9e-05 23.0 0.3 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain eRF1_2 PF03464.15 gi|325967742|ref|YP_004243934.1| - 9.7e-32 110.1 0.0 1.6e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|325967742|ref|YP_004243934.1| - 2.6e-12 47.2 0.0 4.4e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|325967742|ref|YP_004243934.1| - 2e-10 41.0 0.0 3.1e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_3 PF03465.15 gi|325967742|ref|YP_004243934.1| - 3e-06 27.7 1.5 5.9e-05 23.5 1.5 2.6 1 1 0 1 1 1 1 eRF1 domain 3 Ribosomal_L7Ae PF01248.26 gi|325967742|ref|YP_004243934.1| - 3.4e-05 23.5 0.1 7.9e-05 22.3 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_1 PF03463.15 gi|325967742|ref|YP_004243934.1| - 0.0058 16.6 0.0 0.016 15.2 0.0 1.7 1 1 0 1 1 1 1 eRF1 domain 1 SpoU_sub_bind PF08032.12 gi|325967742|ref|YP_004243934.1| - 0.013 15.7 0.1 0.36 11.1 0.0 2.8 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding Ribosomal_S8 PF00410.19 gi|325967742|ref|YP_004243934.1| - 0.085 12.8 0.7 0.68 9.9 0.4 2.7 2 1 0 2 2 2 0 Ribosomal protein S8 ThiS PF02597.20 gi|325967743|ref|YP_004243935.1| - 1.2e-14 54.6 0.0 1.5e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|325967743|ref|YP_004243935.1| - 1.1e-06 28.9 0.2 1.2e-06 28.8 0.2 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS PF02597.20 gi|325967744|ref|YP_004243936.1| - 1.7e-08 35.0 0.0 1.9e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|325967744|ref|YP_004243936.1| - 0.00098 19.4 0.0 0.001 19.4 0.0 1.0 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TGS PF02824.21 gi|325967744|ref|YP_004243936.1| - 0.059 13.4 0.0 5.3 7.2 0.0 2.2 2 0 0 2 2 2 0 TGS domain DUF1641 PF07849.11 gi|325967745|ref|YP_004243937.1| - 1.4e-16 60.0 4.0 1.5e-16 59.9 2.8 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) ATP-synt PF00231.19 gi|325967745|ref|YP_004243937.1| - 0.029 14.1 0.0 0.033 13.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase HisKA PF00512.25 gi|325967745|ref|YP_004243937.1| - 0.2 11.7 0.8 0.58 10.2 0.2 2.0 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Pyr_redox_2 PF07992.14 gi|325967746|ref|YP_004243938.1| - 6.2e-15 55.2 0.0 7.5e-15 54.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Myosin_N PF02736.19 gi|325967746|ref|YP_004243938.1| - 0.098 12.5 0.2 0.26 11.1 0.2 1.7 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain MacB_PCD PF12704.7 gi|325967747|ref|YP_004243939.1| - 8.4e-13 49.1 5.8 8.4e-13 49.1 5.8 1.9 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|325967747|ref|YP_004243939.1| - 1.1e-10 41.9 13.5 1.1e-10 41.9 13.5 3.1 3 1 0 3 3 3 1 FtsX-like permease family Radical_SAM PF04055.21 gi|325967748|ref|YP_004243940.1| - 1.4e-22 80.9 0.0 2.6e-22 80.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|325967748|ref|YP_004243940.1| - 1.1e-21 76.6 0.0 2.1e-21 75.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|325967748|ref|YP_004243940.1| - 0.026 14.5 0.0 0.07 13.1 0.0 1.7 1 0 0 1 1 1 0 TRAM domain TRAM_2 PF18693.1 gi|325967748|ref|YP_004243940.1| - 0.06 13.5 0.1 0.25 11.5 0.1 2.1 1 1 0 1 1 1 0 TRAM domain Big_3_5 PF16640.5 gi|325967749|ref|YP_004243941.1| - 6.4e-12 45.5 33.1 5e-05 23.4 1.8 6.4 6 0 0 6 6 6 5 Bacterial Ig-like domain (group 3) DUF1921 PF09081.10 gi|325967749|ref|YP_004243941.1| - 0.03 14.5 0.1 0.099 12.9 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1921) ATP_bind_1 PF03029.17 gi|325967750|ref|YP_004243942.1| - 5.1e-60 203.2 0.2 6e-60 203.0 0.2 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|325967750|ref|YP_004243942.1| - 2.9e-08 33.5 0.1 0.0061 16.2 0.1 2.2 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|325967750|ref|YP_004243942.1| - 1e-06 28.6 0.1 0.0001 22.0 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain GTP_EFTU PF00009.27 gi|325967750|ref|YP_004243942.1| - 3e-06 26.9 0.3 0.00017 21.2 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|325967750|ref|YP_004243942.1| - 3.3e-06 27.6 0.0 9.9e-06 26.0 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain PduV-EutP PF10662.9 gi|325967750|ref|YP_004243942.1| - 2.3e-05 24.2 0.0 0.4 10.4 0.1 3.3 3 0 0 3 3 3 2 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|325967750|ref|YP_004243942.1| - 4.1e-05 23.6 0.5 0.0094 15.9 0.0 2.3 2 0 0 2 2 2 1 NTPase CbiA PF01656.23 gi|325967750|ref|YP_004243942.1| - 0.00013 22.0 0.0 0.00019 21.5 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|325967750|ref|YP_004243942.1| - 0.00021 20.4 0.0 0.0012 17.8 0.0 2.1 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|325967750|ref|YP_004243942.1| - 0.00021 21.3 0.1 0.0023 18.0 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase CLP1_P PF16575.5 gi|325967750|ref|YP_004243942.1| - 0.00024 21.0 0.3 0.039 13.7 0.0 2.9 1 1 1 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ArsA_ATPase PF02374.15 gi|325967750|ref|YP_004243942.1| - 0.00028 20.2 0.0 0.00038 19.7 0.0 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_22 PF13401.6 gi|325967750|ref|YP_004243942.1| - 0.0003 21.1 0.0 0.00069 19.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|325967750|ref|YP_004243942.1| - 0.00036 20.5 0.5 3.6 7.5 0.0 3.7 3 1 0 3 3 3 1 RsgA GTPase DUF87 PF01935.17 gi|325967750|ref|YP_004243942.1| - 0.00058 20.0 0.6 0.0038 17.4 0.0 2.1 2 1 0 2 2 2 1 Helicase HerA, central domain MobB PF03205.14 gi|325967750|ref|YP_004243942.1| - 0.00062 19.7 0.0 0.0017 18.3 0.0 1.7 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|325967750|ref|YP_004243942.1| - 0.00084 19.3 0.0 0.0021 18.0 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_30 PF13604.6 gi|325967750|ref|YP_004243942.1| - 0.0011 18.8 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|325967750|ref|YP_004243942.1| - 0.0014 18.6 0.0 0.014 15.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|325967750|ref|YP_004243942.1| - 0.0025 17.4 0.1 0.0072 15.9 0.0 1.8 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_18 PF13238.6 gi|325967750|ref|YP_004243942.1| - 0.0025 18.3 0.0 0.0062 17.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain KTI12 PF08433.10 gi|325967750|ref|YP_004243942.1| - 0.0028 17.1 0.1 0.076 12.4 0.0 2.2 2 0 0 2 2 2 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.12 gi|325967750|ref|YP_004243942.1| - 0.004 16.5 0.0 0.0069 15.7 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|325967750|ref|YP_004243942.1| - 0.0042 16.8 0.0 0.0066 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.6 gi|325967750|ref|YP_004243942.1| - 0.0044 17.0 0.0 0.082 12.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|325967750|ref|YP_004243942.1| - 0.0047 16.4 0.1 0.09 12.2 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein T2SSE PF00437.20 gi|325967750|ref|YP_004243942.1| - 0.0068 15.5 0.0 0.016 14.3 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|325967750|ref|YP_004243942.1| - 0.0077 16.7 0.0 0.022 15.3 0.0 1.8 2 0 0 2 2 2 1 ABC transporter NB-ARC PF00931.22 gi|325967750|ref|YP_004243942.1| - 0.0078 15.4 0.0 0.018 14.2 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain SRPRB PF09439.10 gi|325967750|ref|YP_004243942.1| - 0.011 15.2 0.1 3.3 7.1 0.1 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ATPase_2 PF01637.18 gi|325967750|ref|YP_004243942.1| - 0.012 15.6 0.0 0.032 14.1 0.0 1.7 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|325967750|ref|YP_004243942.1| - 0.014 15.7 0.2 0.056 13.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain Ras PF00071.22 gi|325967750|ref|YP_004243942.1| - 0.018 14.7 0.2 1.8 8.2 0.0 2.3 2 0 0 2 2 2 0 Ras family MMR_HSR1_Xtn PF16897.5 gi|325967750|ref|YP_004243942.1| - 0.021 14.8 0.4 8.3 6.5 0.1 2.7 2 1 1 3 3 2 0 C-terminal region of MMR_HSR1 domain Septin PF00735.18 gi|325967750|ref|YP_004243942.1| - 0.022 14.0 0.3 0.038 13.3 0.3 1.5 1 1 0 1 1 1 0 Septin ATPase PF06745.13 gi|325967750|ref|YP_004243942.1| - 0.025 13.9 1.0 0.13 11.6 0.6 2.2 1 1 0 1 1 1 0 KaiC TrwB_AAD_bind PF10412.9 gi|325967750|ref|YP_004243942.1| - 0.031 13.2 0.0 0.048 12.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.6 gi|325967750|ref|YP_004243942.1| - 0.035 14.4 0.1 0.15 12.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|325967750|ref|YP_004243942.1| - 0.051 13.3 0.0 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain PIN PF01850.21 gi|325967750|ref|YP_004243942.1| - 0.052 14.1 0.1 0.4 11.2 0.0 2.1 2 0 0 2 2 2 0 PIN domain AAA_33 PF13671.6 gi|325967750|ref|YP_004243942.1| - 0.054 13.7 0.0 0.078 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|325967750|ref|YP_004243942.1| - 0.065 13.3 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|325967750|ref|YP_004243942.1| - 0.065 13.5 0.0 0.59 10.4 0.0 2.1 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase TsaE PF02367.17 gi|325967750|ref|YP_004243942.1| - 0.077 13.0 0.1 0.43 10.6 0.0 2.0 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activ_2 PF14532.6 gi|325967750|ref|YP_004243942.1| - 0.082 13.0 0.1 0.95 9.6 0.0 2.2 2 1 0 2 2 2 0 Sigma-54 interaction domain APS_kinase PF01583.20 gi|325967750|ref|YP_004243942.1| - 0.089 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF2075 PF09848.9 gi|325967750|ref|YP_004243942.1| - 0.09 12.0 0.1 0.47 9.6 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Arf PF00025.21 gi|325967750|ref|YP_004243942.1| - 0.1 12.0 1.3 8.1 5.9 0.3 2.5 2 1 0 2 2 2 0 ADP-ribosylation factor family MFS_1 PF07690.16 gi|325967751|ref|YP_004243943.1| - 5.9e-09 35.3 34.7 9.6e-07 28.0 1.6 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily CoA_trans PF01144.23 gi|325967754|ref|YP_004243946.1| - 1.7e-15 57.0 0.0 4.6e-15 55.6 0.0 1.6 1 1 0 1 1 1 1 Coenzyme A transferase CoA_trans PF01144.23 gi|325967755|ref|YP_004243947.1| - 1.3e-27 96.6 0.0 1.7e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 Coenzyme A transferase AcetylCoA_hydro PF02550.15 gi|325967755|ref|YP_004243947.1| - 0.031 14.2 0.0 0.065 13.2 0.0 1.6 2 0 0 2 2 2 0 Acetyl-CoA hydrolase/transferase N-terminal domain Mal_decarbox_Al PF16957.5 gi|325967755|ref|YP_004243947.1| - 0.16 10.3 0.0 0.21 9.9 0.0 1.1 1 0 0 1 1 1 0 Malonate decarboxylase, alpha subunit, transporter ThiS PF02597.20 gi|325967756|ref|YP_004243948.1| - 8.3e-13 48.8 0.0 9.7e-13 48.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|325967756|ref|YP_004243948.1| - 0.033 14.2 0.0 0.4 10.8 0.1 2.1 2 0 0 2 2 2 0 TGS domain BRAP2 PF07576.12 gi|325967756|ref|YP_004243948.1| - 0.052 13.8 0.0 0.059 13.6 0.0 1.1 1 0 0 1 1 1 0 BRCA1-associated protein 2 SLBB PF10531.9 gi|325967756|ref|YP_004243948.1| - 0.054 13.4 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 SLBB domain CARD PF00619.21 gi|325967757|ref|YP_004243949.1| - 0.14 12.2 0.0 3.5 7.7 0.0 2.0 2 0 0 2 2 2 0 Caspase recruitment domain NUDIX PF00293.28 gi|325967758|ref|YP_004243950.1| - 2.8e-20 72.7 0.0 3.4e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|325967758|ref|YP_004243950.1| - 0.039 13.9 0.0 0.046 13.7 0.0 1.3 1 1 0 1 1 1 0 NUDIX domain Acylphosphatase PF00708.18 gi|325967759|ref|YP_004243951.1| - 7.2e-30 103.2 0.1 8e-30 103.1 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Cuticle_1 PF08140.11 gi|325967759|ref|YP_004243951.1| - 0.081 13.0 0.1 8.6 6.5 0.0 2.2 2 0 0 2 2 2 0 Crustacean cuticle protein repeat DUF1115 PF06544.12 gi|325967759|ref|YP_004243951.1| - 0.19 11.8 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Pkinase PF00069.25 gi|325967760|ref|YP_004243952.1| - 8.3e-37 127.0 0.0 1.2e-36 126.4 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|325967760|ref|YP_004243952.1| - 3.3e-22 79.0 0.0 4.3e-22 78.6 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|325967760|ref|YP_004243952.1| - 0.16 11.3 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Kinase-like Kdo PF06293.14 gi|325967760|ref|YP_004243952.1| - 0.17 11.2 0.0 0.26 10.6 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|325967760|ref|YP_004243952.1| - 0.17 11.8 0.1 2.5 8.0 0.1 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family FHA PF00498.26 gi|325967761|ref|YP_004243953.1| - 4.6e-16 58.9 0.1 6.7e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|325967761|ref|YP_004243953.1| - 1.6e-07 31.5 0.0 2.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Ribosomal_S26e PF01283.19 gi|325967762|ref|YP_004243954.1| - 6e-30 103.9 3.8 7.5e-30 103.6 3.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.17 gi|325967762|ref|YP_004243954.1| - 0.01 15.8 0.2 6.3 6.8 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.6 gi|325967762|ref|YP_004243954.1| - 0.052 13.0 0.1 0.052 13.0 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|325967762|ref|YP_004243954.1| - 0.054 13.9 0.9 0.5 10.8 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RING_7 PF02591.15 gi|325967762|ref|YP_004243954.1| - 0.1 12.8 0.1 0.27 11.5 0.1 1.7 1 0 0 1 1 1 0 C4-type zinc ribbon domain Radical_SAM PF04055.21 gi|325967763|ref|YP_004243955.1| - 1.5e-17 64.5 0.3 3.6e-16 60.0 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|325967763|ref|YP_004243955.1| - 0.0013 19.0 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.12 gi|325967763|ref|YP_004243955.1| - 0.039 13.5 0.5 3.1 7.4 0.0 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.7 gi|325967763|ref|YP_004243955.1| - 0.74 9.9 0.1 0.74 9.9 0.1 2.9 3 1 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|325967763|ref|YP_004243955.1| - 2.5 7.7 7.8 1.3 8.6 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Molybdopterin PF00384.22 gi|325967765|ref|YP_004243957.1| - 2.4e-10 40.0 0.0 4.5e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|325967765|ref|YP_004243957.1| - 4.4e-06 26.7 0.0 0.00016 21.6 0.0 2.4 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain DAO PF01266.24 gi|325967766|ref|YP_004243958.1| - 1.2e-48 166.5 0.0 1.4e-48 166.3 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|325967766|ref|YP_004243958.1| - 3e-08 33.2 0.2 8.7e-08 31.7 0.0 1.8 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|325967766|ref|YP_004243958.1| - 4.4e-08 32.6 0.3 1.4e-07 30.9 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|325967766|ref|YP_004243958.1| - 8.7e-07 28.5 0.0 4.2e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325967766|ref|YP_004243958.1| - 1.4e-06 28.4 0.6 3.2e-06 27.3 0.6 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|325967766|ref|YP_004243958.1| - 2.7e-06 26.9 1.0 1.6e-05 24.3 0.3 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|325967766|ref|YP_004243958.1| - 7.8e-06 25.5 0.0 1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|325967766|ref|YP_004243958.1| - 0.00028 19.7 0.8 0.0027 16.5 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|325967766|ref|YP_004243958.1| - 0.00029 20.0 1.0 0.00073 18.7 0.2 1.8 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.16 gi|325967766|ref|YP_004243958.1| - 0.00087 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|325967766|ref|YP_004243958.1| - 0.0014 19.1 0.1 0.17 12.4 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|325967766|ref|YP_004243958.1| - 0.0032 16.8 0.1 0.013 14.7 0.1 1.8 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|325967766|ref|YP_004243958.1| - 0.0063 16.5 0.3 0.022 14.7 0.0 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|325967766|ref|YP_004243958.1| - 0.0098 15.8 0.2 0.016 15.1 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|325967766|ref|YP_004243958.1| - 0.015 15.8 3.6 0.056 14.0 0.4 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|325967766|ref|YP_004243958.1| - 0.021 14.9 0.1 0.055 13.5 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|325967766|ref|YP_004243958.1| - 0.024 14.9 0.1 0.067 13.5 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|325967766|ref|YP_004243958.1| - 0.032 13.6 0.3 1.2 8.5 0.1 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GDI PF00996.18 gi|325967766|ref|YP_004243958.1| - 0.034 12.7 0.2 0.065 11.7 0.0 1.5 2 0 0 2 2 2 0 GDP dissociation inhibitor DUF5488 PF17590.2 gi|325967766|ref|YP_004243958.1| - 0.067 12.9 0.5 0.73 9.6 0.0 3.0 4 0 0 4 4 3 0 Family of unknown function (DUF5488) UDPG_MGDP_dh_N PF03721.14 gi|325967766|ref|YP_004243958.1| - 0.077 12.6 0.3 0.16 11.6 0.3 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|325967766|ref|YP_004243958.1| - 0.083 13.1 0.7 0.16 12.2 0.3 1.7 2 0 0 2 2 1 0 Saccharopine dehydrogenase NADP binding domain NinD PF17466.2 gi|325967766|ref|YP_004243958.1| - 0.14 12.3 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function Lycopene_cycl PF05834.12 gi|325967766|ref|YP_004243958.1| - 0.14 11.2 0.1 0.23 10.5 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein adh_short PF00106.25 gi|325967766|ref|YP_004243958.1| - 0.15 11.5 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Amidohydro_3 PF07969.11 gi|325967767|ref|YP_004243959.1| - 2.7e-103 347.0 0.0 3.1e-103 346.8 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|325967767|ref|YP_004243959.1| - 8.9e-13 48.3 0.0 1.4e-08 34.4 0.0 2.7 2 1 0 2 2 2 2 Amidohydrolase family DUF1435 PF07256.12 gi|325967768|ref|YP_004243960.1| - 0.043 13.9 1.5 0.068 13.3 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1435) Acetyltransf_1 PF00583.25 gi|325967769|ref|YP_004243961.1| - 1.8e-15 57.2 0.0 4.1e-15 56.1 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|325967769|ref|YP_004243961.1| - 2.5e-08 34.7 0.1 4.2e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|325967769|ref|YP_004243961.1| - 7.9e-08 32.3 0.0 2.2e-07 30.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|325967769|ref|YP_004243961.1| - 3.9e-07 30.4 0.0 1.6e-06 28.5 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|325967769|ref|YP_004243961.1| - 5.9e-07 29.6 0.0 2e-06 27.9 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|325967769|ref|YP_004243961.1| - 8e-06 25.7 0.0 1.5e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|325967769|ref|YP_004243961.1| - 9.5e-06 25.8 0.0 2.1e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|325967769|ref|YP_004243961.1| - 9.8e-05 22.0 0.0 0.00075 19.1 0.0 2.0 2 0 0 2 2 2 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|325967769|ref|YP_004243961.1| - 0.00012 22.2 0.0 0.0027 17.8 0.0 2.2 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|325967769|ref|YP_004243961.1| - 0.0024 17.6 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|325967769|ref|YP_004243961.1| - 0.0036 17.4 0.0 0.0054 16.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain CLP1_P PF16575.5 gi|325967770|ref|YP_004243962.1| - 1.3e-32 113.1 0.0 2.2e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|325967770|ref|YP_004243962.1| - 0.0085 16.1 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.27 gi|325967770|ref|YP_004243962.1| - 0.031 13.8 0.3 0.062 12.8 0.3 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain MobB PF03205.14 gi|325967770|ref|YP_004243962.1| - 0.048 13.6 0.0 0.074 12.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|325967770|ref|YP_004243962.1| - 0.05 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|325967770|ref|YP_004243962.1| - 0.088 12.9 0.0 6.3 6.9 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF4147 PF13660.6 gi|325967771|ref|YP_004243963.1| - 6.6e-71 238.5 0.1 9.5e-71 238.0 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|325967771|ref|YP_004243963.1| - 1.2e-27 96.2 3.0 4.7e-27 94.3 1.6 2.2 2 0 0 2 2 2 1 MOFRL family Enolase_like_N PF18374.1 gi|325967771|ref|YP_004243963.1| - 0.084 12.3 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Enolase N-terminal domain-like Translin PF01997.16 gi|325967772|ref|YP_004243964.1| - 1.2e-15 58.1 1.9 3.9e-14 53.1 1.9 2.1 1 1 0 1 1 1 1 Translin family Seryl_tRNA_N PF02403.22 gi|325967772|ref|YP_004243964.1| - 0.067 13.4 3.1 1.7 8.9 0.1 2.4 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Nitroreductase PF00881.24 gi|325967773|ref|YP_004243965.1| - 4.6e-21 75.6 0.0 5.6e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family DUF2258 PF10015.9 gi|325967774|ref|YP_004243966.1| - 3.9e-24 84.6 3.9 2.1e-23 82.2 2.0 2.1 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2258) Spc29 PF17082.5 gi|325967774|ref|YP_004243966.1| - 0.02 14.7 0.3 0.024 14.5 0.3 1.1 1 0 0 1 1 1 0 Spindle Pole Component 29 DUF211 PF02680.14 gi|325967775|ref|YP_004243967.1| - 3.8e-31 107.1 4.2 4.2e-31 107.0 4.2 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 BRCT PF00533.26 gi|325967775|ref|YP_004243967.1| - 0.048 14.0 0.0 0.071 13.5 0.0 1.3 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain DUF3042 PF11240.8 gi|325967776|ref|YP_004243968.1| - 0.073 13.1 0.1 0.25 11.4 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3042) Tmemb_14 PF03647.13 gi|325967776|ref|YP_004243968.1| - 0.086 13.6 9.5 0.14 12.9 4.4 2.1 2 0 0 2 2 2 0 Transmembrane proteins 14C PrgI PF12666.7 gi|325967776|ref|YP_004243968.1| - 6.6 7.5 9.2 39 5.0 3.5 2.7 2 1 1 3 3 3 0 PrgI family protein Trm112p PF03966.16 gi|325967777|ref|YP_004243969.1| - 4.4e-13 49.6 1.9 4.4e-13 49.6 1.9 1.5 2 0 0 2 2 2 1 Trm112p-like protein Stc1 PF12898.7 gi|325967777|ref|YP_004243969.1| - 0.064 13.8 0.6 0.1 13.2 0.6 1.4 1 0 0 1 1 1 0 Stc1 domain FAD_binding_2 PF00890.24 gi|325967778|ref|YP_004243970.1| - 1.1e-108 364.0 0.0 1.3e-108 363.7 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|325967778|ref|YP_004243970.1| - 9.2e-42 142.1 0.1 1.5e-41 141.3 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|325967778|ref|YP_004243970.1| - 1.9e-05 24.1 0.2 0.0056 16.0 0.1 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|325967778|ref|YP_004243970.1| - 0.0037 16.5 0.7 0.79 8.9 0.1 3.1 3 0 0 3 3 3 1 Thi4 family DAO PF01266.24 gi|325967778|ref|YP_004243970.1| - 0.038 13.6 0.0 0.077 12.6 0.0 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|325967778|ref|YP_004243970.1| - 0.095 12.0 0.1 13 5.0 0.0 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|325967778|ref|YP_004243970.1| - 0.097 11.7 0.5 1.2 8.1 0.5 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A MscS_porin PF12795.7 gi|325967779|ref|YP_004243971.1| - 0.00043 19.9 7.6 0.00043 19.9 7.6 3.1 2 1 1 3 3 3 1 Mechanosensitive ion channel porin domain Nup54 PF13874.6 gi|325967779|ref|YP_004243971.1| - 0.00047 20.3 2.5 0.00047 20.3 2.5 3.7 1 1 2 3 3 3 2 Nucleoporin complex subunit 54 DUF3618 PF12277.8 gi|325967779|ref|YP_004243971.1| - 0.0016 18.6 0.7 1.5 9.1 0.1 4.3 3 0 0 3 3 3 1 Protein of unknown function (DUF3618) Seryl_tRNA_N PF02403.22 gi|325967779|ref|YP_004243971.1| - 0.0017 18.5 12.2 0.0017 18.5 12.2 5.0 2 2 3 5 5 5 2 Seryl-tRNA synthetase N-terminal domain ATG16 PF08614.11 gi|325967779|ref|YP_004243971.1| - 0.0027 18.0 48.0 0.32 11.2 15.5 3.4 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) Jnk-SapK_ap_N PF09744.9 gi|325967779|ref|YP_004243971.1| - 0.003 17.8 17.1 0.003 17.8 17.1 3.2 2 1 1 3 3 3 1 JNK_SAPK-associated protein-1 APG6_N PF17675.1 gi|325967779|ref|YP_004243971.1| - 0.003 18.1 61.2 0.12 12.9 3.1 4.8 1 1 4 5 5 5 4 Apg6 coiled-coil region Tup_N PF08581.10 gi|325967779|ref|YP_004243971.1| - 0.0036 17.6 0.9 0.0036 17.6 0.9 5.4 4 2 3 7 7 5 1 Tup N-terminal FliJ PF02050.16 gi|325967779|ref|YP_004243971.1| - 0.006 16.8 39.6 0.028 14.6 8.9 3.8 2 2 2 4 4 4 2 Flagellar FliJ protein DUF148 PF02520.17 gi|325967779|ref|YP_004243971.1| - 0.0064 16.6 5.8 0.0064 16.6 5.8 4.2 2 1 2 4 4 4 2 Domain of unknown function DUF148 Baculo_PEP_C PF04513.12 gi|325967779|ref|YP_004243971.1| - 0.011 15.8 20.0 0.15 12.1 4.4 3.8 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus RasGEF_N_2 PF14663.6 gi|325967779|ref|YP_004243971.1| - 0.016 15.6 1.6 0.016 15.6 1.6 2.6 2 2 0 2 2 2 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Sec34 PF04136.15 gi|325967779|ref|YP_004243971.1| - 0.017 15.0 3.5 0.017 15.0 3.5 3.6 2 1 2 4 4 3 0 Sec34-like family DUF1192 PF06698.11 gi|325967779|ref|YP_004243971.1| - 0.018 15.1 2.7 0.018 15.1 2.7 6.6 6 2 1 7 7 5 0 Protein of unknown function (DUF1192) DUF3584 PF12128.8 gi|325967779|ref|YP_004243971.1| - 0.024 12.2 43.8 0.007 14.0 13.0 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) BORCS8 PF10167.9 gi|325967779|ref|YP_004243971.1| - 0.028 14.4 0.4 0.028 14.4 0.4 3.3 2 2 1 3 3 3 0 BLOC-1-related complex sub-unit 8 TPR_MLP1_2 PF07926.12 gi|325967779|ref|YP_004243971.1| - 0.03 14.4 52.5 0.11 12.6 15.3 4.5 2 2 1 3 3 3 0 TPR/MLP1/MLP2-like protein MtrB PF05440.12 gi|325967779|ref|YP_004243971.1| - 0.057 13.8 2.2 5.4 7.5 0.1 3.3 2 2 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Rab5-bind PF09311.11 gi|325967779|ref|YP_004243971.1| - 0.058 12.8 45.9 0.028 13.8 8.9 3.1 2 1 1 3 3 3 0 Rabaptin-like protein DinB_2 PF12867.7 gi|325967779|ref|YP_004243971.1| - 0.068 13.7 0.7 17 5.9 0.0 3.7 1 1 2 3 3 3 0 DinB superfamily Rsm22 PF09243.10 gi|325967779|ref|YP_004243971.1| - 0.078 12.2 2.0 0.23 10.7 2.0 1.7 1 0 0 1 1 1 0 Mitochondrial small ribosomal subunit Rsm22 Atg14 PF10186.9 gi|325967779|ref|YP_004243971.1| - 0.082 12.0 52.0 0.53 9.3 14.5 3.5 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF948 PF06103.11 gi|325967779|ref|YP_004243971.1| - 0.085 13.1 16.0 2.8 8.3 1.3 4.5 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF2937 PF11157.8 gi|325967779|ref|YP_004243971.1| - 0.12 12.1 0.2 0.12 12.1 0.2 2.8 2 1 2 4 4 4 0 Protein of unknown function (DUF2937) STAT_alpha PF01017.20 gi|325967779|ref|YP_004243971.1| - 0.17 11.8 41.4 0.12 12.3 11.2 3.8 1 1 2 3 3 3 0 STAT protein, all-alpha domain AAA_13 PF13166.6 gi|325967779|ref|YP_004243971.1| - 0.17 10.5 40.8 0.88 8.1 13.1 2.2 1 1 1 2 2 2 0 AAA domain ApoO PF09769.9 gi|325967779|ref|YP_004243971.1| - 0.19 11.7 5.7 1.5 8.8 0.6 2.6 2 0 0 2 2 2 0 Apolipoprotein O HAUS-augmin3 PF14932.6 gi|325967779|ref|YP_004243971.1| - 0.21 11.1 41.6 0.21 11.2 16.6 3.0 1 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 DUF4407 PF14362.6 gi|325967779|ref|YP_004243971.1| - 0.22 10.9 28.6 0.19 11.0 6.3 2.7 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) CENP-F_leu_zip PF10473.9 gi|325967779|ref|YP_004243971.1| - 0.23 11.5 64.4 0.29 11.2 17.9 4.7 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_II PF06009.12 gi|325967779|ref|YP_004243971.1| - 0.29 11.1 38.5 0.65 10.0 11.6 3.4 2 1 1 3 3 3 0 Laminin Domain II NPV_P10 PF05531.12 gi|325967779|ref|YP_004243971.1| - 0.36 11.3 18.4 2.7 8.5 2.2 4.5 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein OmpH PF03938.14 gi|325967779|ref|YP_004243971.1| - 0.39 11.0 47.3 0.034 14.5 8.0 3.8 2 1 1 3 3 2 0 Outer membrane protein (OmpH-like) Spc7 PF08317.11 gi|325967779|ref|YP_004243971.1| - 0.41 9.5 56.6 0.081 11.8 16.5 3.2 1 1 2 4 4 4 0 Spc7 kinetochore protein DUF4201 PF13870.6 gi|325967779|ref|YP_004243971.1| - 0.44 10.3 60.4 0.3 10.8 12.4 4.2 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) Metal_resist PF13801.6 gi|325967779|ref|YP_004243971.1| - 0.48 10.6 5.8 21 5.3 0.1 4.3 2 1 2 4 4 4 0 Heavy-metal resistance HBD PF18534.1 gi|325967779|ref|YP_004243971.1| - 0.52 10.5 6.8 1.4 9.1 0.2 3.5 2 1 0 3 3 2 0 Helical bundle domain Mod_r PF07200.13 gi|325967779|ref|YP_004243971.1| - 0.56 10.3 47.3 0.35 11.0 15.8 4.0 1 1 4 5 5 5 0 Modifier of rudimentary (Mod(r)) protein APG17 PF04108.12 gi|325967779|ref|YP_004243971.1| - 0.73 8.9 30.1 0.043 12.9 7.2 2.9 2 1 0 2 2 2 0 Autophagy protein Apg17 Gon7 PF08738.10 gi|325967779|ref|YP_004243971.1| - 0.82 9.8 13.1 0.12 12.4 4.0 2.8 2 1 0 2 2 2 0 Gon7 family YtxH PF12732.7 gi|325967779|ref|YP_004243971.1| - 0.95 10.0 23.8 7.2 7.2 0.0 5.0 2 2 1 3 3 2 0 YtxH-like protein Fez1 PF06818.15 gi|325967779|ref|YP_004243971.1| - 1.1 9.7 50.8 0.059 13.8 13.7 3.2 1 1 2 3 3 3 0 Fez1 Lectin_N PF03954.14 gi|325967779|ref|YP_004243971.1| - 1.1 9.1 15.5 2.3 7.9 3.8 2.9 2 1 0 2 2 2 0 Hepatic lectin, N-terminal domain HalX PF08663.10 gi|325967779|ref|YP_004243971.1| - 1.3 9.4 20.3 0.48 10.8 6.4 5.2 2 2 4 6 6 5 0 HalX domain DUF1664 PF07889.12 gi|325967779|ref|YP_004243971.1| - 1.9 8.5 32.0 3.4 7.7 2.7 4.7 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Filament PF00038.21 gi|325967779|ref|YP_004243971.1| - 2 7.9 51.7 1.2e+02 2.0 51.7 3.0 1 1 0 1 1 1 0 Intermediate filament protein Golgin_A5 PF09787.9 gi|325967779|ref|YP_004243971.1| - 2.1 7.7 50.0 1.3 8.4 15.1 2.3 1 1 1 2 2 2 0 Golgin subfamily A member 5 GAS PF13851.6 gi|325967779|ref|YP_004243971.1| - 2.3 7.5 57.1 0.027 13.8 15.3 3.4 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding RTBV_P46 PF06216.11 gi|325967779|ref|YP_004243971.1| - 2.8 6.7 14.3 3.1 6.6 3.1 2.2 2 0 0 2 2 2 0 Rice tungro bacilliform virus P46 protein CEP63 PF17045.5 gi|325967779|ref|YP_004243971.1| - 4.9 7.0 51.6 4.4 7.1 13.9 3.2 1 1 0 2 2 2 0 Centrosomal protein of 63 kDa TMPIT PF07851.13 gi|325967779|ref|YP_004243971.1| - 5.7 6.1 38.4 0.4 9.9 7.4 3.3 2 2 1 3 3 3 0 TMPIT-like protein DUF4140 PF13600.6 gi|325967779|ref|YP_004243971.1| - 7.4 7.1 34.1 3.6e+03 -1.5 15.6 5.8 2 2 0 2 2 0 0 N-terminal domain of unknown function (DUF4140) GLE1 PF07817.13 gi|325967779|ref|YP_004243971.1| - 7.9 5.6 20.5 0.06 12.5 3.6 3.3 2 2 1 3 3 3 0 GLE1-like protein DUF373 PF04123.13 gi|325967780|ref|YP_004243972.1| - 3.1e-84 283.3 15.7 3.8e-84 283.0 15.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) UPF0020 PF01170.18 gi|325967781|ref|YP_004243973.1| - 3.3e-13 49.8 0.0 4.4e-07 29.8 0.0 2.1 1 1 0 2 2 2 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|325967781|ref|YP_004243973.1| - 2.7e-11 43.6 0.0 1.2e-08 34.9 0.0 2.2 2 0 0 2 2 2 2 DNA methylase MethyltransfD12 PF02086.15 gi|325967781|ref|YP_004243973.1| - 0.00061 19.6 0.3 0.0025 17.5 0.0 1.9 1 1 1 2 2 2 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_11 PF08241.12 gi|325967781|ref|YP_004243973.1| - 0.0014 19.2 0.0 0.0071 17.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|325967781|ref|YP_004243973.1| - 0.013 15.2 0.0 0.059 13.0 0.0 1.9 1 1 0 1 1 1 0 Conserved hypothetical protein 95 N6_Mtase PF02384.16 gi|325967781|ref|YP_004243973.1| - 0.029 13.7 0.0 1.1 8.5 0.0 2.1 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_23 PF13489.6 gi|325967781|ref|YP_004243973.1| - 0.12 12.2 0.0 0.75 9.6 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain OMPdecase PF00215.24 gi|325967782|ref|YP_004243974.1| - 1.4e-20 73.9 0.9 1.8e-20 73.5 0.9 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|325967782|ref|YP_004243974.1| - 0.032 13.6 0.9 0.087 12.2 0.9 1.9 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family Prefoldin PF02996.17 gi|325967783|ref|YP_004243975.1| - 0.0024 17.8 2.3 0.47 10.4 0.6 2.1 2 0 0 2 2 2 2 Prefoldin subunit BLOC1_2 PF10046.9 gi|325967783|ref|YP_004243975.1| - 0.011 16.0 0.6 0.7 10.2 0.3 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran_CTD PF16326.5 gi|325967783|ref|YP_004243975.1| - 0.029 14.6 0.6 0.054 13.7 0.1 1.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain MAD PF05557.13 gi|325967783|ref|YP_004243975.1| - 0.033 12.6 0.3 0.039 12.3 0.3 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein PKcGMP_CC PF16808.5 gi|325967783|ref|YP_004243975.1| - 0.047 13.5 0.2 0.11 12.4 0.2 1.6 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF3755 PF12579.8 gi|325967783|ref|YP_004243975.1| - 0.067 12.8 0.6 0.18 11.4 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3755) TMF_TATA_bd PF12325.8 gi|325967783|ref|YP_004243975.1| - 0.072 13.3 0.8 2.4 8.4 0.3 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding STAT_alpha PF01017.20 gi|325967783|ref|YP_004243975.1| - 0.093 12.6 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 STAT protein, all-alpha domain NPV_P10 PF05531.12 gi|325967783|ref|YP_004243975.1| - 0.12 12.9 1.6 0.91 10.0 0.3 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Chordopox_A30L PF06015.12 gi|325967783|ref|YP_004243975.1| - 0.63 9.9 3.1 0.71 9.7 0.3 2.3 2 1 1 3 3 3 0 Chordopoxvirus A30L protein tRNA_NucTransf2 PF09249.11 gi|325967784|ref|YP_004243976.1| - 4.2e-41 139.7 0.0 8.5e-41 138.7 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|325967784|ref|YP_004243976.1| - 4.3e-10 39.7 0.0 1.1e-09 38.4 0.0 1.8 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|325967784|ref|YP_004243976.1| - 7.4e-06 26.2 0.1 1.3e-05 25.4 0.1 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain RPN7 PF10602.9 gi|325967785|ref|YP_004243977.1| - 0.00082 19.1 0.3 0.0051 16.5 0.1 2.5 3 0 0 3 3 3 1 26S proteasome subunit RPN7 TPR_12 PF13424.6 gi|325967785|ref|YP_004243977.1| - 0.13 12.6 0.5 4.4 7.7 0.1 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat NTP_transferase PF00483.23 gi|325967786|ref|YP_004243978.1| - 1.3e-41 142.8 0.0 1.6e-41 142.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|325967786|ref|YP_004243978.1| - 3.4e-14 51.9 13.1 6.2e-07 28.9 4.5 3.5 1 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|325967786|ref|YP_004243978.1| - 5.6e-07 30.0 0.0 7.6e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|325967786|ref|YP_004243978.1| - 4e-06 26.5 7.4 0.0056 16.4 0.1 3.2 2 2 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|325967786|ref|YP_004243978.1| - 0.00053 18.3 0.3 0.00082 17.6 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Ribosomal_S13 PF00416.22 gi|325967787|ref|YP_004243979.1| - 8.5e-35 119.9 0.0 1e-34 119.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Acetyltransf_1 PF00583.25 gi|325967788|ref|YP_004243980.1| - 2e-12 47.4 0.0 2.5e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|325967788|ref|YP_004243980.1| - 6.7e-09 35.8 0.0 9.3e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|325967788|ref|YP_004243980.1| - 4.9e-06 26.9 0.1 1e-05 25.8 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|325967788|ref|YP_004243980.1| - 0.00011 22.9 0.0 0.00014 22.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|325967788|ref|YP_004243980.1| - 0.00022 21.1 0.0 0.00058 19.8 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|325967788|ref|YP_004243980.1| - 0.00023 21.3 0.0 0.00075 19.6 0.0 1.8 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|325967788|ref|YP_004243980.1| - 0.0025 17.9 0.0 0.019 15.0 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|325967788|ref|YP_004243980.1| - 0.018 14.6 0.3 0.033 13.8 0.3 1.5 1 1 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_4 PF13420.7 gi|325967788|ref|YP_004243980.1| - 0.031 14.4 0.0 0.047 13.8 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain EMG1 PF03587.14 gi|325967789|ref|YP_004243981.1| - 7.7e-40 136.6 0.0 9.3e-40 136.4 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase SIS PF01380.22 gi|325967790|ref|YP_004243982.1| - 2.1e-44 150.6 0.4 1e-28 99.8 0.6 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|325967790|ref|YP_004243982.1| - 1.9e-24 86.3 0.0 3.7e-24 85.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|325967790|ref|YP_004243982.1| - 7.4e-20 71.1 0.0 1.5e-19 70.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|325967790|ref|YP_004243982.1| - 9.7e-05 22.4 0.7 0.00036 20.6 0.5 2.0 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|325967790|ref|YP_004243982.1| - 0.033 13.1 0.0 0.056 12.3 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Hexapep PF00132.24 gi|325967791|ref|YP_004243983.1| - 3.2e-15 55.2 17.1 5.9e-06 25.8 0.1 6.0 6 1 1 7 7 7 5 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.23 gi|325967791|ref|YP_004243983.1| - 1.6e-14 54.1 0.0 2.2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|325967791|ref|YP_004243983.1| - 1.9e-06 28.3 0.0 2.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|325967791|ref|YP_004243983.1| - 7.4e-06 25.6 18.3 0.0054 16.5 0.1 5.1 5 0 0 5 5 5 3 Hexapeptide repeat of succinyl-transferase Not1 PF04054.15 gi|325967792|ref|YP_004243984.1| - 0.011 14.6 0.4 0.015 14.2 0.4 1.1 1 0 0 1 1 1 0 CCR4-Not complex component, Not1 RPT PF13446.6 gi|325967792|ref|YP_004243984.1| - 0.031 14.2 0.8 0.076 13.0 0.1 2.1 3 0 0 3 3 3 0 A repeated domain in UCH-protein PCNA_N PF00705.18 gi|325967793|ref|YP_004243985.1| - 2.5e-14 53.1 0.0 1.2e-13 50.9 0.0 2.0 1 1 1 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|325967793|ref|YP_004243985.1| - 1.1e-06 28.8 0.8 5e-06 26.7 0.2 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|325967793|ref|YP_004243985.1| - 0.015 14.8 0.2 0.025 14.1 0.2 1.3 1 1 0 1 1 1 0 Rad9 Phage_DsbA PF11126.8 gi|325967793|ref|YP_004243985.1| - 0.072 13.3 0.1 0.2 11.9 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator DsbA Pectinesterase PF01095.19 gi|325967793|ref|YP_004243985.1| - 0.1 11.3 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 Pectinesterase DUF1743 PF08489.11 gi|325967794|ref|YP_004243986.1| - 4.7e-26 91.1 0.0 8.7e-26 90.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Zn_Tnp_IS1595 PF12760.7 gi|325967794|ref|YP_004243986.1| - 0.006 16.5 0.5 0.013 15.5 0.5 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|325967794|ref|YP_004243986.1| - 0.056 12.8 2.5 0.11 11.8 2.5 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger IBR PF01485.21 gi|325967794|ref|YP_004243986.1| - 0.18 12.0 0.3 0.38 11.0 0.0 1.6 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain DNA_RNApol_7kD PF03604.13 gi|325967794|ref|YP_004243986.1| - 0.23 11.2 2.6 0.59 9.9 2.6 1.7 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|325967794|ref|YP_004243986.1| - 0.26 11.2 1.6 0.55 10.2 1.6 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|325967794|ref|YP_004243986.1| - 7.5 6.3 6.9 0.27 10.9 1.0 1.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Trehalose_PPase PF02358.16 gi|325967795|ref|YP_004243987.1| - 2.5e-10 39.9 0.0 3.9e-10 39.3 0.0 1.3 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|325967795|ref|YP_004243987.1| - 1.9e-05 24.5 0.1 7.4e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|325967795|ref|YP_004243987.1| - 0.023 15.1 0.0 0.42 11.0 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase DUF521 PF04412.13 gi|325967796|ref|YP_004243988.1| - 1.6e-101 339.9 0.0 1.8e-101 339.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Acid_phosphat_B PF03767.14 gi|325967797|ref|YP_004243989.1| - 1e-08 35.1 0.0 1.3e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase PF00702.26 gi|325967797|ref|YP_004243989.1| - 1.6e-06 28.6 0.0 0.0046 17.3 0.0 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|325967797|ref|YP_004243989.1| - 5.6e-05 23.2 0.0 0.00011 22.2 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|325967797|ref|YP_004243989.1| - 0.0011 19.1 0.0 0.15 12.1 0.0 2.3 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PNK3P PF08645.11 gi|325967797|ref|YP_004243989.1| - 0.0032 17.2 0.0 0.0043 16.8 0.0 1.2 1 0 0 1 1 1 1 Polynucleotide kinase 3 phosphatase HAD_SAK_2 PF18143.1 gi|325967797|ref|YP_004243989.1| - 0.007 16.7 0.0 0.013 15.8 0.0 1.5 1 1 0 1 1 1 1 HAD domain in Swiss Army Knife RNA repair proteins Hydrolase_3 PF08282.12 gi|325967797|ref|YP_004243989.1| - 0.0086 15.8 0.0 0.1 12.3 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF910 PF06014.11 gi|325967797|ref|YP_004243989.1| - 0.0093 16.0 0.0 2.3 8.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF910) DUF2608 PF11019.8 gi|325967797|ref|YP_004243989.1| - 0.013 15.1 0.0 0.14 11.6 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2608) 5-nucleotidase PF06189.12 gi|325967797|ref|YP_004243989.1| - 0.018 14.0 0.0 0.85 8.5 0.0 2.4 2 1 0 2 2 2 0 5'-nucleotidase GATase_3 PF07685.14 gi|325967798|ref|YP_004243990.1| - 1.9e-10 40.6 0.0 3.4e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|325967798|ref|YP_004243990.1| - 4.3e-07 30.0 0.0 7.6e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|325967798|ref|YP_004243990.1| - 9.2e-06 25.6 0.5 0.0013 18.6 0.5 2.3 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|325967798|ref|YP_004243990.1| - 0.014 14.9 0.2 0.014 14.9 0.2 1.6 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase GATase_5 PF13507.6 gi|325967798|ref|YP_004243990.1| - 0.04 13.0 0.0 0.13 11.3 0.0 1.7 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|325967798|ref|YP_004243990.1| - 0.053 13.4 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family DNA_pol_B PF00136.21 gi|325967799|ref|YP_004243991.1| - 4e-50 170.9 0.0 8.8e-50 169.7 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|325967799|ref|YP_004243991.1| - 4.4e-30 105.0 0.1 8.8e-30 104.0 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|325967799|ref|YP_004243991.1| - 4e-05 23.7 0.1 0.0001 22.3 0.1 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|325967799|ref|YP_004243991.1| - 0.0001 22.1 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB BRE PF06113.12 gi|325967799|ref|YP_004243991.1| - 0.0034 16.3 0.0 0.0072 15.2 0.0 1.4 1 0 0 1 1 1 1 Brain and reproductive organ-expressed protein (BRE) DNA_pol_B_2 PF03175.13 gi|325967799|ref|YP_004243991.1| - 0.03 13.2 0.0 0.06 12.2 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral Peptidase_M1_N PF17900.1 gi|325967799|ref|YP_004243991.1| - 0.12 12.5 0.8 0.23 11.6 0.1 1.7 2 0 0 2 2 2 0 Peptidase M1 N-terminal domain DUF2286 PF10051.9 gi|325967800|ref|YP_004243992.1| - 2.4e-43 147.2 5.7 2.7e-43 147.0 5.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) Pox_ser-thr_kin PF05445.11 gi|325967800|ref|YP_004243992.1| - 0.053 12.5 1.5 0.26 10.2 0.2 1.8 1 1 1 2 2 2 0 Poxvirus serine/threonine protein kinase CDP-OH_P_transf PF01066.21 gi|325967801|ref|YP_004243993.1| - 3.4e-12 46.9 1.7 3.4e-12 46.9 1.7 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF5423 PF17461.2 gi|325967801|ref|YP_004243993.1| - 7.3 5.3 5.3 10 4.8 5.3 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5423) PadR PF03551.14 gi|325967802|ref|YP_004243994.1| - 1e-09 38.2 0.1 1.6e-09 37.6 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|325967802|ref|YP_004243994.1| - 0.017 15.0 0.3 0.044 13.7 0.3 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RTP PF02334.16 gi|325967802|ref|YP_004243994.1| - 0.018 15.7 0.2 0.03 14.9 0.2 1.5 1 1 0 1 1 1 0 Replication terminator protein HTH_12 PF08461.10 gi|325967802|ref|YP_004243994.1| - 0.025 14.5 0.1 0.041 13.8 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain ELFV_dehydrog PF00208.21 gi|325967803|ref|YP_004243995.1| - 1.4e-72 244.3 0.4 1.8e-72 244.0 0.4 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|325967803|ref|YP_004243995.1| - 2.9e-54 182.5 0.0 4.9e-54 181.7 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|325967803|ref|YP_004243995.1| - 0.0034 16.8 0.2 0.0058 16.0 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|325967803|ref|YP_004243995.1| - 0.048 13.7 0.6 0.11 12.5 0.5 1.5 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Lactamase_B PF00753.27 gi|325967804|ref|YP_004243996.1| - 6.2e-05 23.1 0.1 0.00013 22.0 0.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|325967804|ref|YP_004243996.1| - 9e-05 22.1 0.0 0.00098 18.7 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Peripla_BP_6 PF13458.6 gi|325967804|ref|YP_004243996.1| - 0.0051 16.5 0.0 0.026 14.2 0.0 1.8 1 1 1 2 2 2 1 Periplasmic binding protein Flavodoxin_1 PF00258.25 gi|325967804|ref|YP_004243996.1| - 0.12 12.6 0.0 0.28 11.4 0.0 1.7 1 1 0 1 1 1 0 Flavodoxin CTP_transf_like PF01467.26 gi|325967805|ref|YP_004243997.1| - 6e-11 42.7 0.0 1.9e-10 41.1 0.0 1.8 2 1 0 2 2 2 1 Cytidylyltransferase-like Citrate_synt PF00285.21 gi|325967806|ref|YP_004243998.1| - 5.4e-128 427.1 0.0 6.2e-128 426.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain NucS PF01939.16 gi|325967809|ref|YP_004244001.1| - 4.8e-57 193.0 0.0 5.9e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS UPF0102 PF02021.17 gi|325967809|ref|YP_004244001.1| - 0.00075 19.7 0.1 0.002 18.3 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 PDDEXK_9 PF08011.11 gi|325967809|ref|YP_004244001.1| - 0.0015 18.4 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_4 PF14281.6 gi|325967809|ref|YP_004244001.1| - 0.0018 18.5 0.1 0.0027 17.9 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|325967809|ref|YP_004244001.1| - 0.0022 18.1 0.0 0.0036 17.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 HSDR_N PF04313.14 gi|325967809|ref|YP_004244001.1| - 0.005 16.8 0.0 0.011 15.7 0.0 1.4 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Mrr_cat PF04471.12 gi|325967809|ref|YP_004244001.1| - 0.0057 16.7 0.0 0.0095 15.9 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease HSDR_N_2 PF13588.6 gi|325967809|ref|YP_004244001.1| - 0.016 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) SpoIIM PF01944.17 gi|325967810|ref|YP_004244002.1| - 0.0052 16.8 10.9 0.0075 16.3 10.9 1.2 1 0 0 1 1 1 1 Stage II sporulation protein M KASH PF10541.9 gi|325967810|ref|YP_004244002.1| - 0.16 12.3 0.3 0.16 12.3 0.3 2.5 3 0 0 3 3 3 0 Nuclear envelope localisation domain DHHC PF01529.20 gi|325967810|ref|YP_004244002.1| - 5.9 7.0 7.2 1.9 8.6 0.3 2.1 1 1 1 2 2 2 0 DHHC palmitoyltransferase Pribosyltran PF00156.27 gi|325967811|ref|YP_004244003.1| - 2.5e-16 59.6 0.0 3.5e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|325967811|ref|YP_004244003.1| - 0.0024 17.3 0.0 0.0036 16.8 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Yqai PF09466.10 gi|325967811|ref|YP_004244003.1| - 0.14 12.5 0.0 0.51 10.7 0.0 1.9 2 0 0 2 2 2 0 Hypothetical protein Yqai EamA PF00892.20 gi|325967812|ref|YP_004244004.1| - 6.5e-26 91.1 46.0 1.3e-14 54.6 21.2 2.0 2 0 0 2 2 2 2 EamA-like transporter family ERCC4 PF02732.15 gi|325967813|ref|YP_004244005.1| - 3.6e-16 59.8 0.0 8.4e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|325967813|ref|YP_004244005.1| - 0.0001 22.8 0.1 0.00045 20.8 0.0 2.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|325967813|ref|YP_004244005.1| - 0.00038 20.2 0.0 0.001 18.8 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|325967813|ref|YP_004244005.1| - 0.014 15.7 0.0 0.081 13.3 0.0 2.4 1 0 0 1 1 1 0 IMS family HHH motif 5_3_exonuc PF01367.20 gi|325967813|ref|YP_004244005.1| - 0.051 14.2 0.0 0.14 12.8 0.0 1.9 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Transposase_20 PF02371.16 gi|325967813|ref|YP_004244005.1| - 0.19 12.1 0.0 12 6.3 0.0 2.5 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family TFIIS_C PF01096.18 gi|325967814|ref|YP_004244006.1| - 1.2e-05 25.1 1.2 1.5e-05 24.8 1.2 1.1 1 0 0 1 1 1 1 Transcription factor S-II (TFIIS) DUF929 PF06053.11 gi|325967814|ref|YP_004244006.1| - 0.0059 15.9 0.1 0.0059 15.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF929) DUF35_N PF12172.8 gi|325967814|ref|YP_004244006.1| - 0.0072 16.2 0.7 0.28 11.1 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Elf1 PF05129.13 gi|325967814|ref|YP_004244006.1| - 0.013 15.5 0.5 0.014 15.4 0.5 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like CpXC PF14353.6 gi|325967814|ref|YP_004244006.1| - 0.013 15.5 0.8 0.27 11.3 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-ribbon_3 PF13248.6 gi|325967814|ref|YP_004244006.1| - 0.014 14.7 8.2 0.12 11.8 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|325967814|ref|YP_004244006.1| - 0.042 13.8 1.5 0.17 11.8 1.5 1.9 1 1 0 1 1 1 0 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.6 gi|325967814|ref|YP_004244006.1| - 0.053 13.5 5.4 1.5 8.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|325967814|ref|YP_004244006.1| - 0.064 13.0 5.6 0.85 9.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF1_Zn_bind PF09416.10 gi|325967814|ref|YP_004244006.1| - 0.078 12.9 1.0 0.082 12.9 1.0 1.1 1 0 0 1 1 1 0 RNA helicase (UPF2 interacting domain) DUF951 PF06107.11 gi|325967814|ref|YP_004244006.1| - 0.1 12.5 0.6 0.37 10.7 0.6 1.9 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF951) zf-C2H2 PF00096.26 gi|325967814|ref|YP_004244006.1| - 0.14 12.7 5.2 2.4 8.8 0.7 2.4 2 1 0 2 2 2 0 Zinc finger, C2H2 type zf-RING_7 PF02591.15 gi|325967814|ref|YP_004244006.1| - 0.2 11.9 6.5 1.8 8.8 0.9 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|325967814|ref|YP_004244006.1| - 0.32 10.8 4.6 5.3 6.9 0.5 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.11 gi|325967814|ref|YP_004244006.1| - 1.7 8.3 6.6 5.5 6.6 1.8 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) CBFD_NFYB_HMF PF00808.23 gi|325967815|ref|YP_004244007.1| - 1.4e-13 50.9 0.1 1.6e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|325967815|ref|YP_004244007.1| - 1.6e-08 34.9 0.1 1.8e-08 34.8 0.1 1.1 1 0 0 1 1 1 1 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|325967815|ref|YP_004244007.1| - 1.8e-05 24.8 0.0 1.8e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Centromere kinetochore component CENP-T histone fold TAF PF02969.17 gi|325967815|ref|YP_004244007.1| - 3.8e-05 23.8 0.1 4e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 TATA box binding protein associated factor (TAF) CENP-S PF15630.6 gi|325967815|ref|YP_004244007.1| - 3.9e-05 24.0 0.1 4.6e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 CENP-S protein TFIID-31kDa PF02291.15 gi|325967815|ref|YP_004244007.1| - 0.00015 21.8 0.0 0.00018 21.5 0.0 1.0 1 0 0 1 1 1 1 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.16 gi|325967815|ref|YP_004244007.1| - 0.0056 16.7 0.0 0.0063 16.5 0.0 1.1 1 0 0 1 1 1 1 Transcription initiation factor IID, 18kD subunit Bromo_TP PF07524.13 gi|325967815|ref|YP_004244007.1| - 0.023 14.7 0.0 0.029 14.4 0.0 1.1 1 0 0 1 1 1 0 Bromodomain associated Bromo_TP_like PF17027.5 gi|325967815|ref|YP_004244007.1| - 0.029 14.5 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Histone-fold protein PCP_red PF08369.10 gi|325967815|ref|YP_004244007.1| - 0.038 14.2 0.2 0.37 11.0 0.1 2.0 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit GATase_6 PF13522.6 gi|325967815|ref|YP_004244007.1| - 0.054 13.7 0.0 0.062 13.5 0.0 1.1 1 0 0 1 1 1 0 Glutamine amidotransferase domain DUF1931 PF09123.11 gi|325967815|ref|YP_004244007.1| - 0.061 13.4 0.2 0.067 13.3 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) LepA_C PF06421.12 gi|325967815|ref|YP_004244007.1| - 0.12 12.5 0.0 0.15 12.3 0.0 1.1 1 0 0 1 1 1 0 GTP-binding protein LepA C-terminus AdoMet_dc PF02675.15 gi|325967816|ref|YP_004244008.1| - 2.1e-32 111.5 0.0 2.4e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|325967816|ref|YP_004244008.1| - 0.0052 16.5 0.0 0.0085 15.9 0.0 1.4 1 0 0 1 1 1 1 Stage VI sporulation protein F CMAS PF02353.20 gi|325967817|ref|YP_004244009.1| - 0.0027 17.1 0.0 0.003 16.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|325967817|ref|YP_004244009.1| - 0.0094 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Diphthamide_syn PF01866.17 gi|325967818|ref|YP_004244010.1| - 5e-35 121.4 0.0 7.2e-35 120.9 0.0 1.2 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Cpn60_TCP1 PF00118.24 gi|325967819|ref|YP_004244011.1| - 6.6e-177 589.0 11.3 7.5e-177 588.8 11.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4191 PF13829.6 gi|325967820|ref|YP_004244012.1| - 7.9 5.7 7.5 1.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) T2SSE PF00437.20 gi|325967821|ref|YP_004244013.1| - 2.8e-18 66.0 0.3 4.4e-18 65.3 0.3 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|325967821|ref|YP_004244013.1| - 0.00028 20.6 0.0 0.00067 19.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|325967821|ref|YP_004244013.1| - 0.0029 17.0 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|325967821|ref|YP_004244013.1| - 0.0089 15.8 0.1 0.046 13.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|325967821|ref|YP_004244013.1| - 0.009 16.3 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|325967821|ref|YP_004244013.1| - 0.012 16.2 0.0 0.025 15.1 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|325967821|ref|YP_004244013.1| - 0.012 16.0 0.0 0.03 14.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|325967821|ref|YP_004244013.1| - 0.012 16.1 0.2 0.056 13.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|325967821|ref|YP_004244013.1| - 0.013 15.8 0.2 0.046 14.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|325967821|ref|YP_004244013.1| - 0.023 14.8 0.0 0.084 13.0 0.0 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|325967821|ref|YP_004244013.1| - 0.025 15.1 0.1 0.51 10.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain SRPRB PF09439.10 gi|325967821|ref|YP_004244013.1| - 0.03 13.8 0.5 0.35 10.3 0.0 2.5 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit KTI12 PF08433.10 gi|325967821|ref|YP_004244013.1| - 0.032 13.7 0.1 0.46 9.9 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_14 PF13173.6 gi|325967821|ref|YP_004244013.1| - 0.087 12.9 0.1 0.43 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain TF_Zn_Ribbon PF08271.12 gi|325967822|ref|YP_004244014.1| - 3.6e-08 32.8 2.0 9.3e-08 31.5 2.0 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|325967822|ref|YP_004244014.1| - 0.0002 21.0 1.5 0.00036 20.2 1.5 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain TFIIB PF00382.19 gi|325967822|ref|YP_004244014.1| - 0.00048 20.1 0.2 0.05 13.6 0.0 2.5 2 1 0 2 2 2 1 Transcription factor TFIIB repeat HEPN PF05168.14 gi|325967822|ref|YP_004244014.1| - 0.0066 16.6 0.6 1.2 9.2 0.0 3.0 1 1 1 2 2 2 1 HEPN domain zf-RRN7 PF11781.8 gi|325967822|ref|YP_004244014.1| - 0.0071 16.0 0.9 0.013 15.1 0.9 1.5 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HTH_12 PF08461.10 gi|325967822|ref|YP_004244014.1| - 0.035 14.1 1.6 3.8 7.5 0.0 3.3 3 1 0 3 3 3 0 Ribonuclease R winged-helix domain HTH_23 PF13384.6 gi|325967822|ref|YP_004244014.1| - 0.038 13.8 0.3 0.73 9.7 0.2 2.5 2 0 0 2 2 2 0 Homeodomain-like domain zinc_ribbon_2 PF13240.6 gi|325967822|ref|YP_004244014.1| - 0.37 10.6 1.7 9.9 6.0 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|325967822|ref|YP_004244014.1| - 1.1 8.7 4.5 5.5 6.5 4.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|325967822|ref|YP_004244014.1| - 1.7 8.8 3.5 1 9.6 1.4 1.7 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_RpbG PF16992.5 gi|325967823|ref|YP_004244015.1| - 8.2e-05 22.6 0.9 9.8e-05 22.4 0.9 1.1 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G Lsm_C PF14894.6 gi|325967824|ref|YP_004244016.1| - 4.2e-24 84.1 1.0 9.8e-24 82.9 0.6 1.8 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.22 gi|325967824|ref|YP_004244016.1| - 7.3e-08 32.0 0.7 1.4e-07 31.1 0.7 1.5 1 0 0 1 1 1 1 LSM domain Gemin6 PF06372.12 gi|325967824|ref|YP_004244016.1| - 1.1e-05 25.1 0.1 1.4e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 Gemin6 protein SM-ATX PF14438.6 gi|325967824|ref|YP_004244016.1| - 0.00037 20.6 0.1 0.0006 19.9 0.1 1.4 1 0 0 1 1 1 1 Ataxin 2 SM domain BPL_C PF02237.17 gi|325967824|ref|YP_004244016.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 Biotin protein ligase C terminal domain FAM70 PF14967.6 gi|325967824|ref|YP_004244016.1| - 0.025 14.1 0.2 0.051 13.0 0.2 1.4 1 1 0 1 1 1 0 FAM70 protein LSM14 PF12701.7 gi|325967824|ref|YP_004244016.1| - 0.054 13.6 0.3 0.093 12.8 0.3 1.7 1 1 0 1 1 1 0 Scd6-like Sm domain TGT PF01702.18 gi|325967825|ref|YP_004244017.1| - 2.1e-72 244.2 0.0 3.1e-72 243.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|325967825|ref|YP_004244017.1| - 8.4e-13 48.4 0.1 1.4e-12 47.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|325967826|ref|YP_004244018.1| - 3.7e-36 125.2 0.0 4.2e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family BLOC1_2 PF10046.9 gi|325967826|ref|YP_004244018.1| - 0.1 12.9 1.2 0.17 12.2 1.2 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Ribosomal_S17e PF00833.18 gi|325967827|ref|YP_004244019.1| - 3.1e-20 72.3 0.0 3.4e-20 72.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4290 PF14123.6 gi|325967827|ref|YP_004244019.1| - 0.011 15.3 0.1 0.015 14.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) CSD2 PF17876.1 gi|325967827|ref|YP_004244019.1| - 0.043 14.0 0.0 0.045 13.9 0.0 1.2 1 0 0 1 1 1 0 Cold shock domain HSP20 PF00011.21 gi|325967828|ref|YP_004244020.1| - 3.1e-11 43.3 3.9 3.3e-10 40.0 1.8 2.4 2 1 0 2 2 2 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|325967828|ref|YP_004244020.1| - 1.2e-10 40.8 0.1 1.7e-10 40.3 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|325967828|ref|YP_004244020.1| - 0.00024 22.1 0.4 0.00037 21.5 0.4 1.4 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|325967828|ref|YP_004244020.1| - 0.032 14.3 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 GvpH Plk4_PB1 PF18190.1 gi|325967828|ref|YP_004244020.1| - 0.047 13.8 0.2 0.082 13.1 0.2 1.4 1 0 0 1 1 1 0 Polo-like Kinase 4 Polo Box 1 TAFII55_N PF04658.13 gi|325967828|ref|YP_004244020.1| - 0.071 12.8 0.8 0.11 12.2 0.1 1.7 2 0 0 2 2 2 0 TAFII55 protein conserved region DPCD PF14913.6 gi|325967828|ref|YP_004244020.1| - 0.082 12.3 1.5 0.11 11.8 1.5 1.5 1 1 0 1 1 1 0 DPCD protein family tRNA-synt_1g PF09334.11 gi|325967829|ref|YP_004244021.1| - 5e-151 502.9 0.0 6.4e-151 502.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|325967829|ref|YP_004244021.1| - 1.1e-12 47.1 0.2 3.5e-06 25.6 0.0 4.0 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|325967829|ref|YP_004244021.1| - 7.7e-05 22.7 0.4 0.00032 20.7 0.2 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|325967829|ref|YP_004244021.1| - 0.0017 17.8 0.0 0.057 12.8 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain zf-RING_7 PF02591.15 gi|325967829|ref|YP_004244021.1| - 0.085 13.1 5.2 2 8.7 0.4 3.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain tRNA-synt_1f PF01921.18 gi|325967829|ref|YP_004244021.1| - 0.1 11.5 0.0 2.2 7.1 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|325967829|ref|YP_004244021.1| - 0.23 11.5 2.9 0.48 10.5 2.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|325967829|ref|YP_004244021.1| - 1.2 8.8 3.3 4.3 6.9 2.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding dUTPase PF00692.19 gi|325967830|ref|YP_004244022.1| - 3.2e-14 52.7 0.1 6.9e-13 48.4 0.0 2.0 1 1 1 2 2 2 1 dUTPase DCD PF06559.11 gi|325967830|ref|YP_004244022.1| - 0.03 13.1 0.0 2.7 6.7 0.0 2.8 2 1 0 2 2 2 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Arabinose_Isome PF02610.15 gi|325967831|ref|YP_004244023.1| - 0.008 15.4 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 L-arabinose isomerase AhpC-TSA PF00578.21 gi|325967832|ref|YP_004244024.1| - 8.8e-36 122.6 0.0 1e-35 122.3 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|325967832|ref|YP_004244024.1| - 1.8e-21 76.4 0.0 2e-21 76.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|325967832|ref|YP_004244024.1| - 0.0019 18.1 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.6 gi|325967832|ref|YP_004244024.1| - 0.01 16.0 0.0 0.099 12.8 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|325967832|ref|YP_004244024.1| - 0.023 15.0 0.0 0.043 14.1 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like DUF899 PF05988.12 gi|325967832|ref|YP_004244024.1| - 0.14 11.7 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Oxidored_molyb PF00174.19 gi|325967833|ref|YP_004244025.1| - 7.2e-41 139.7 0.1 1.5e-40 138.6 0.1 1.5 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TAT_signal PF10518.9 gi|325967833|ref|YP_004244025.1| - 0.00084 19.1 1.3 0.0018 18.0 1.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Spo0A_C PF08769.11 gi|325967833|ref|YP_004244025.1| - 0.0061 16.6 0.0 0.024 14.7 0.0 2.0 2 0 0 2 2 2 1 Sporulation initiation factor Spo0A C terminal Ni_hydr_CYTB PF01292.20 gi|325967834|ref|YP_004244026.1| - 0.0004 20.0 2.2 0.0004 20.0 2.2 1.5 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 DUF3325 PF11804.8 gi|325967834|ref|YP_004244026.1| - 0.15 12.2 7.8 0.061 13.5 4.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3325) DnaGprimase_HBD PF16730.5 gi|325967835|ref|YP_004244027.1| - 0.0069 16.5 0.1 0.012 15.7 0.1 1.4 1 1 0 1 1 1 1 DnaG-primase C-terminal, helicase-binding domain GerD PF17898.1 gi|325967835|ref|YP_004244027.1| - 0.029 14.3 0.0 0.072 13.0 0.0 1.7 1 1 0 1 1 1 0 Spore germination GerD central core domain UNC45-central PF11701.8 gi|325967836|ref|YP_004244028.1| - 0.026 14.5 0.0 0.032 14.2 0.0 1.1 1 0 0 1 1 1 0 Myosin-binding striated muscle assembly central PAPS_reduct PF01507.19 gi|325967837|ref|YP_004244029.1| - 1.9e-40 138.7 0.0 6.6e-40 137.0 0.0 1.8 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Fer4_10 PF13237.6 gi|325967837|ref|YP_004244029.1| - 3e-07 30.4 5.5 0.00069 19.7 0.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325967837|ref|YP_004244029.1| - 3.6e-06 26.6 10.1 6.5e-05 22.6 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325967837|ref|YP_004244029.1| - 1.5e-05 25.5 7.4 3.4e-05 24.4 7.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325967837|ref|YP_004244029.1| - 1.8e-05 24.5 11.5 0.00031 20.7 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325967837|ref|YP_004244029.1| - 0.00012 22.1 7.6 0.0003 20.9 7.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325967837|ref|YP_004244029.1| - 0.00013 22.0 10.1 0.014 15.5 2.1 2.2 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325967837|ref|YP_004244029.1| - 0.0004 21.3 8.9 0.0093 16.9 0.6 2.9 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|325967837|ref|YP_004244029.1| - 0.001 19.0 1.2 0.001 19.0 1.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|325967837|ref|YP_004244029.1| - 0.0041 17.5 8.1 0.075 13.5 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|325967837|ref|YP_004244029.1| - 0.0046 17.1 2.4 0.0091 16.2 2.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325967837|ref|YP_004244029.1| - 0.017 15.7 6.4 0.77 10.3 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325967837|ref|YP_004244029.1| - 0.037 15.0 14.2 0.88 10.7 3.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|325967837|ref|YP_004244029.1| - 0.051 14.1 1.2 0.051 14.1 1.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Aminotran_5 PF00266.19 gi|325967839|ref|YP_004244031.1| - 3.6e-34 118.3 0.0 1.5e-33 116.3 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|325967839|ref|YP_004244031.1| - 2.9e-09 36.6 0.0 5.4e-08 32.4 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|325967839|ref|YP_004244031.1| - 1.2e-06 28.1 0.0 2e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|325967839|ref|YP_004244031.1| - 0.0031 16.1 0.0 0.0046 15.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme QueC PF06508.13 gi|325967840|ref|YP_004244032.1| - 7.7e-47 159.5 0.0 8.9e-47 159.3 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|325967840|ref|YP_004244032.1| - 7.9e-11 41.9 0.0 5.9e-10 39.1 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) ATP_bind_3 PF01171.20 gi|325967840|ref|YP_004244032.1| - 4.1e-06 26.7 0.0 7.3e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|325967840|ref|YP_004244032.1| - 7.3e-06 25.3 0.0 0.0069 15.5 0.0 2.1 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|325967840|ref|YP_004244032.1| - 2e-05 23.5 0.0 6.3e-05 21.9 0.0 1.8 2 1 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|325967840|ref|YP_004244032.1| - 4e-05 23.4 0.0 5.4e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase Arginosuc_synth PF00764.19 gi|325967840|ref|YP_004244032.1| - 0.0032 16.8 0.0 0.0071 15.7 0.0 1.5 2 0 0 2 2 2 1 Arginosuccinate synthase Mu-like_Com PF10122.9 gi|325967840|ref|YP_004244032.1| - 0.0085 15.5 0.5 0.021 14.3 0.1 1.7 2 0 0 2 2 2 1 Mu-like prophage protein Com Diphthami_syn_2 PF01902.17 gi|325967840|ref|YP_004244032.1| - 0.014 14.9 0.0 0.95 8.9 0.0 2.6 1 1 0 2 2 2 0 Diphthamide synthase IU_nuc_hydro PF01156.19 gi|325967840|ref|YP_004244032.1| - 0.055 13.0 0.0 0.091 12.3 0.0 1.3 1 1 0 1 1 1 0 Inosine-uridine preferring nucleoside hydrolase PAPS_reduct PF01507.19 gi|325967840|ref|YP_004244032.1| - 0.072 13.1 0.0 0.41 10.7 0.0 2.0 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family MmgE_PrpD PF03972.14 gi|325967841|ref|YP_004244033.1| - 3.4e-137 457.6 0.0 4.2e-137 457.3 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family SDH_alpha PF03313.15 gi|325967841|ref|YP_004244033.1| - 0.059 13.0 1.0 0.31 10.7 0.4 2.2 2 0 0 2 2 2 0 Serine dehydratase alpha chain Topo-VIb_trans PF09239.11 gi|325967842|ref|YP_004244034.1| - 6.4e-62 208.1 0.1 1.1e-61 207.4 0.1 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|325967842|ref|YP_004244034.1| - 3.3e-12 46.9 0.0 6e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|325967842|ref|YP_004244034.1| - 4.1e-09 36.4 0.0 1.3e-08 34.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Trypan_glycop PF00913.19 gi|325967842|ref|YP_004244034.1| - 0.33 10.2 0.4 0.49 9.6 0.4 1.1 1 0 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) DUF123 PF01986.16 gi|325967844|ref|YP_004244036.1| - 1.9e-12 47.5 0.0 2.6e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 TruB_N PF01509.18 gi|325967846|ref|YP_004244038.1| - 4.8e-24 85.4 0.0 1.9e-14 54.3 0.0 3.3 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|325967846|ref|YP_004244038.1| - 2.1e-20 72.6 0.3 4.5e-20 71.5 0.1 1.7 2 0 0 2 2 2 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|325967846|ref|YP_004244038.1| - 2.2e-18 66.0 0.1 4.5e-18 65.0 0.1 1.6 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|325967846|ref|YP_004244038.1| - 5.5e-15 55.2 0.0 1.4e-14 53.9 0.0 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3173 PF11372.8 gi|325967846|ref|YP_004244038.1| - 0.054 13.4 0.1 0.099 12.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3173) UPF0113 PF03657.13 gi|325967846|ref|YP_004244038.1| - 0.12 12.7 0.1 0.35 11.1 0.0 1.9 2 0 0 2 2 2 0 UPF0113 PUA domain Radical_SAM PF04055.21 gi|325967847|ref|YP_004244039.1| - 4e-23 82.6 0.0 7.3e-23 81.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|325967847|ref|YP_004244039.1| - 7.1e-09 36.1 0.3 1.9e-08 34.7 0.3 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|325967847|ref|YP_004244039.1| - 5.6e-08 33.1 0.0 1.1e-07 32.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325967847|ref|YP_004244039.1| - 8e-06 26.0 0.0 1.8e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain FR47 PF08445.10 gi|325967848|ref|YP_004244040.1| - 1.3e-12 47.5 0.0 2.2e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|325967848|ref|YP_004244040.1| - 2.8e-10 40.5 0.1 7.5e-10 39.1 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|325967848|ref|YP_004244040.1| - 6.6e-06 26.1 0.0 1.1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|325967848|ref|YP_004244040.1| - 6.7e-06 25.8 0.0 1.1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_7 PF13508.7 gi|325967848|ref|YP_004244040.1| - 1.9e-05 25.0 0.0 4.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|325967848|ref|YP_004244040.1| - 0.02 15.6 0.0 0.036 14.7 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|325967848|ref|YP_004244040.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region FGGY_N PF00370.21 gi|325967849|ref|YP_004244041.1| - 5.7e-42 144.0 0.0 1.7e-41 142.4 0.0 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|325967849|ref|YP_004244041.1| - 4.8e-23 81.9 0.0 7.3e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|325967849|ref|YP_004244041.1| - 0.00022 20.8 0.4 0.34 10.4 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family Pyridoxal_deC PF00282.19 gi|325967850|ref|YP_004244042.1| - 2.7e-26 92.2 0.0 7.2e-26 90.8 0.0 1.7 2 1 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|325967850|ref|YP_004244042.1| - 3e-14 52.7 0.0 5.8e-14 51.8 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|325967850|ref|YP_004244042.1| - 3.6e-08 33.1 0.0 5.5e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|325967850|ref|YP_004244042.1| - 1.6e-05 23.8 0.5 5.1e-05 22.1 0.1 1.8 2 0 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Cys_Met_Meta_PP PF01053.20 gi|325967850|ref|YP_004244042.1| - 0.014 14.0 0.0 0.022 13.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|325967850|ref|YP_004244042.1| - 0.15 11.3 0.1 0.25 10.6 0.1 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase MFS_1 PF07690.16 gi|325967851|ref|YP_004244043.1| - 7.6e-18 64.5 11.4 8.5e-18 64.4 11.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|325967851|ref|YP_004244043.1| - 0.0063 15.4 1.8 0.0063 15.4 1.8 1.8 1 1 1 2 2 2 1 MFS_1 like family Sugar_tr PF00083.24 gi|325967851|ref|YP_004244043.1| - 0.18 10.7 7.6 0.64 8.8 7.6 1.7 1 1 0 1 1 1 0 Sugar (and other) transporter DUF2207 PF09972.9 gi|325967851|ref|YP_004244043.1| - 0.89 8.2 4.1 0.16 10.7 0.2 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF2085 PF09858.9 gi|325967851|ref|YP_004244043.1| - 1.2 9.7 4.7 2.1 8.9 0.6 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2085) UNC-93 PF05978.16 gi|325967851|ref|YP_004244043.1| - 1.2 8.8 6.5 0.17 11.6 2.8 1.5 2 0 0 2 2 2 0 Ion channel regulatory protein UNC-93 TraG_N PF07916.11 gi|325967851|ref|YP_004244043.1| - 6 5.6 9.8 7.7 5.2 9.8 1.2 1 0 0 1 1 1 0 TraG-like protein, N-terminal region ABC_tran PF00005.27 gi|325967853|ref|YP_004244045.1| - 1.3e-25 90.5 0.0 1.9e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325967853|ref|YP_004244045.1| - 1.5e-11 44.7 0.2 0.00015 21.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|325967853|ref|YP_004244045.1| - 0.00026 21.4 0.1 0.0023 18.3 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325967853|ref|YP_004244045.1| - 0.00035 21.0 0.0 0.00048 20.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|325967853|ref|YP_004244045.1| - 0.00041 20.1 0.1 0.0039 16.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|325967853|ref|YP_004244045.1| - 0.00041 20.9 0.0 0.00066 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|325967853|ref|YP_004244045.1| - 0.0019 17.9 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|325967853|ref|YP_004244045.1| - 0.0041 17.4 0.1 0.013 15.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain Arm-DNA-bind_3 PF13356.6 gi|325967853|ref|YP_004244045.1| - 0.0044 17.4 0.1 0.011 16.0 0.1 1.7 1 0 0 1 1 1 1 Arm DNA-binding domain DLIC PF05783.11 gi|325967853|ref|YP_004244045.1| - 0.0089 14.9 0.0 0.013 14.4 0.0 1.1 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) SMC_N PF02463.19 gi|325967853|ref|YP_004244045.1| - 0.0098 15.4 0.0 0.85 9.0 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|325967853|ref|YP_004244045.1| - 0.011 15.3 0.1 0.033 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|325967853|ref|YP_004244045.1| - 0.013 15.1 0.0 0.074 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|325967853|ref|YP_004244045.1| - 0.024 14.8 0.1 0.1 12.8 0.1 2.0 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|325967853|ref|YP_004244045.1| - 0.027 14.1 0.1 0.14 11.8 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|325967853|ref|YP_004244045.1| - 0.029 14.3 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|325967853|ref|YP_004244045.1| - 0.031 14.3 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_8 PF12780.7 gi|325967853|ref|YP_004244045.1| - 0.031 13.6 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 IstB_IS21 PF01695.17 gi|325967853|ref|YP_004244045.1| - 0.033 13.9 0.1 6.5 6.4 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein MukB PF04310.12 gi|325967853|ref|YP_004244045.1| - 0.052 13.3 0.0 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal NTPase_1 PF03266.15 gi|325967853|ref|YP_004244045.1| - 0.056 13.4 0.1 0.2 11.6 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_15 PF13175.6 gi|325967853|ref|YP_004244045.1| - 0.057 13.1 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|325967853|ref|YP_004244045.1| - 0.065 12.8 0.4 0.14 11.7 0.4 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|325967853|ref|YP_004244045.1| - 0.07 13.2 0.1 0.21 11.6 0.1 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|325967853|ref|YP_004244045.1| - 0.081 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|325967853|ref|YP_004244045.1| - 0.087 11.9 0.0 0.23 10.5 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|325967853|ref|YP_004244045.1| - 0.089 12.1 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|325967853|ref|YP_004244045.1| - 0.13 12.0 0.1 0.28 10.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|325967853|ref|YP_004244045.1| - 0.13 9.8 0.0 0.17 9.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rad17 PF03215.15 gi|325967853|ref|YP_004244045.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|325967853|ref|YP_004244045.1| - 0.14 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|325967853|ref|YP_004244045.1| - 0.17 11.8 0.2 0.34 10.8 0.2 1.5 1 0 0 1 1 1 0 NACHT domain ABC_ATPase PF09818.9 gi|325967853|ref|YP_004244045.1| - 0.2 10.4 0.5 0.39 9.4 0.2 1.6 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|325967853|ref|YP_004244045.1| - 0.34 9.5 0.0 3.2 6.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.24 gi|325967854|ref|YP_004244046.1| - 4.1e-15 55.8 29.2 4.1e-15 55.8 29.2 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|325967854|ref|YP_004244046.1| - 9.7e-11 41.4 32.3 9.7e-11 41.4 32.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein MFS_1 PF07690.16 gi|325967855|ref|YP_004244047.1| - 1.6e-25 89.8 57.5 2.2e-21 76.2 35.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|325967855|ref|YP_004244047.1| - 4e-08 32.3 32.7 2.5e-06 26.4 12.4 2.1 1 1 1 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|325967855|ref|YP_004244047.1| - 0.00087 18.2 22.6 0.28 10.0 22.6 2.2 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|325967855|ref|YP_004244047.1| - 2.8 6.7 28.8 0.0068 15.3 15.2 2.7 2 1 1 3 3 3 0 Sugar (and other) transporter adh_short_C2 PF13561.6 gi|325967856|ref|YP_004244048.1| - 7.2e-65 218.8 0.1 8.8e-65 218.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|325967856|ref|YP_004244048.1| - 1.4e-47 161.7 0.2 1.6e-47 161.5 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|325967856|ref|YP_004244048.1| - 9.9e-18 64.7 0.1 1.5e-17 64.1 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|325967856|ref|YP_004244048.1| - 3.6e-06 26.6 0.1 2.6e-05 23.8 0.1 2.0 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|325967856|ref|YP_004244048.1| - 0.0046 16.5 0.0 0.022 14.3 0.1 1.8 2 0 0 2 2 2 1 NmrA-like family Polysacc_synt_2 PF02719.15 gi|325967856|ref|YP_004244048.1| - 0.0056 15.8 0.2 0.01 15.0 0.1 1.4 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein 2-Hacid_dh_C PF02826.19 gi|325967856|ref|YP_004244048.1| - 0.06 12.7 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LDcluster4 PF18306.1 gi|325967856|ref|YP_004244048.1| - 0.062 12.9 0.1 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 SLOG cluster4 family DUF3104 PF11302.8 gi|325967856|ref|YP_004244048.1| - 0.12 12.1 0.0 14 5.5 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3104) PEP_mutase PF13714.6 gi|325967858|ref|YP_004244050.1| - 1e-58 198.6 0.0 1.2e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|325967858|ref|YP_004244050.1| - 1.7e-14 53.2 0.1 2.8e-14 52.5 0.1 1.4 1 0 0 1 1 1 1 Isocitrate lyase family Pantoate_transf PF02548.15 gi|325967858|ref|YP_004244050.1| - 0.042 13.2 0.0 0.17 11.2 0.0 1.9 1 1 1 2 2 2 0 Ketopantoate hydroxymethyltransferase 3HCDH_N PF02737.18 gi|325967859|ref|YP_004244051.1| - 9.6e-67 224.4 0.2 1.4e-66 223.9 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|325967859|ref|YP_004244051.1| - 3.6e-64 216.5 0.0 5.8e-64 215.8 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|325967859|ref|YP_004244051.1| - 1.4e-51 173.1 0.0 1.8e-26 92.6 0.0 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|325967859|ref|YP_004244051.1| - 8.4e-43 147.1 0.1 5.7e-39 134.5 0.1 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|325967859|ref|YP_004244051.1| - 4.6e-06 26.7 0.0 1.1e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|325967859|ref|YP_004244051.1| - 3.7e-05 23.9 0.0 7.9e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|325967859|ref|YP_004244051.1| - 0.0023 17.2 0.1 0.0042 16.3 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|325967859|ref|YP_004244051.1| - 0.01 16.4 0.2 0.044 14.4 0.2 2.1 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Peptidase_S49 PF01343.18 gi|325967859|ref|YP_004244051.1| - 0.027 14.4 0.0 0.065 13.2 0.0 1.6 1 0 0 1 1 1 0 Peptidase family S49 UDPG_MGDP_dh_N PF03721.14 gi|325967859|ref|YP_004244051.1| - 0.042 13.4 0.1 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|325967859|ref|YP_004244051.1| - 0.057 14.0 0.3 0.22 12.1 0.3 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|325967859|ref|YP_004244051.1| - 0.083 13.3 0.1 0.23 11.9 0.1 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding SDH_sah PF01972.16 gi|325967859|ref|YP_004244051.1| - 0.11 11.5 0.1 0.88 8.5 0.1 2.3 1 1 0 1 1 1 0 Serine dehydrogenase proteinase BPD_transp_1 PF00528.22 gi|325967860|ref|YP_004244052.1| - 6.6e-12 45.5 16.3 6.6e-12 45.5 16.3 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|325967861|ref|YP_004244053.1| - 6.8e-18 65.2 0.0 9.2e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TYW3 PF02676.14 gi|325967862|ref|YP_004244054.1| - 1.9e-32 112.4 0.0 2.9e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase TYW3 ABC_tran PF00005.27 gi|325967863|ref|YP_004244055.1| - 1.4e-28 100.1 0.0 2.1e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325967863|ref|YP_004244055.1| - 1.5e-06 28.3 0.0 0.033 14.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|325967863|ref|YP_004244055.1| - 0.0028 17.9 0.1 0.021 15.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|325967863|ref|YP_004244055.1| - 0.003 18.0 0.6 0.046 14.1 0.6 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|325967863|ref|YP_004244055.1| - 0.0052 17.3 0.3 0.013 16.0 0.2 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|325967863|ref|YP_004244055.1| - 0.018 15.5 0.0 0.028 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|325967863|ref|YP_004244055.1| - 0.029 14.1 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|325967863|ref|YP_004244055.1| - 0.042 13.3 0.0 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain PhoH PF02562.16 gi|325967863|ref|YP_004244055.1| - 0.14 11.6 0.0 0.34 10.3 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein AAA_19 PF13245.6 gi|325967863|ref|YP_004244055.1| - 0.19 12.1 0.0 0.5 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|325967864|ref|YP_004244056.1| - 4.8e-22 78.6 39.7 3e-14 53.2 14.0 3.4 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Ribosomal_L14 PF00238.19 gi|325967866|ref|YP_004244058.1| - 1.3e-32 112.4 0.1 1.6e-32 112.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|325967866|ref|YP_004244058.1| - 0.0052 17.0 0.1 0.013 15.8 0.0 1.6 2 0 0 2 2 2 1 PAS fold HGTP_anticodon PF03129.20 gi|325967867|ref|YP_004244059.1| - 1.5e-17 63.5 0.2 4.7e-17 61.9 0.2 1.9 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|325967867|ref|YP_004244059.1| - 6.5e-07 29.5 0.1 2.3e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Zn-ribbon_8 PF09723.10 gi|325967867|ref|YP_004244059.1| - 0.036 14.2 1.1 4.8 7.4 0.0 2.8 3 0 0 3 3 3 0 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|325967867|ref|YP_004244059.1| - 0.057 13.3 4.5 0.075 13.0 0.1 2.7 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Rad50_zn_hook PF04423.14 gi|325967867|ref|YP_004244059.1| - 0.17 11.7 4.0 0.74 9.7 0.1 2.8 3 0 0 3 3 3 0 Rad50 zinc hook motif zf-C2H2_4 PF13894.6 gi|325967867|ref|YP_004244059.1| - 0.19 12.7 0.8 23 6.1 0.0 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger Arginase PF00491.21 gi|325967868|ref|YP_004244060.1| - 1.9e-53 181.8 0.0 2.3e-53 181.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family POR PF01558.18 gi|325967870|ref|YP_004244062.1| - 6.9e-36 123.9 0.1 8.2e-36 123.7 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|325967871|ref|YP_004244063.1| - 1.3e-14 53.3 16.2 3.9e-08 32.8 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325967871|ref|YP_004244063.1| - 2.2e-11 43.7 6.9 3.2e-11 43.2 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325967871|ref|YP_004244063.1| - 8.2e-10 38.2 12.1 3.8e-05 23.5 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|325967871|ref|YP_004244063.1| - 1.1e-08 35.1 21.6 8.7e-07 29.0 11.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325967871|ref|YP_004244063.1| - 2.1e-08 34.9 9.1 0.00071 20.5 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|325967871|ref|YP_004244063.1| - 3.3e-08 34.0 8.2 6.7e-08 33.0 8.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325967871|ref|YP_004244063.1| - 3.4e-08 33.2 16.7 0.00062 19.7 4.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325967871|ref|YP_004244063.1| - 1.7e-07 31.3 18.0 1.3e-06 28.5 8.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|325967871|ref|YP_004244063.1| - 5.4e-06 26.8 6.7 8.5e-06 26.1 6.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|325967871|ref|YP_004244063.1| - 2.5e-05 24.9 12.3 0.015 16.0 0.5 2.9 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|325967871|ref|YP_004244063.1| - 0.00057 20.4 15.2 0.0095 16.5 3.7 2.4 2 1 1 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|325967871|ref|YP_004244063.1| - 0.0017 18.9 11.6 0.028 14.9 12.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325967871|ref|YP_004244063.1| - 0.0052 17.2 11.5 0.049 14.2 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|325967871|ref|YP_004244063.1| - 0.01 16.7 9.0 0.026 15.4 0.9 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|325967872|ref|YP_004244064.1| - 7.5e-72 241.8 0.9 9.9e-72 241.4 0.9 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|325967872|ref|YP_004244064.1| - 1.4e-25 89.5 0.1 2.5e-25 88.7 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|325967872|ref|YP_004244064.1| - 0.00089 19.1 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain SHOCT PF09851.9 gi|325967872|ref|YP_004244064.1| - 0.05 13.4 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 Short C-terminal domain TPP_enzyme_C PF02775.21 gi|325967873|ref|YP_004244065.1| - 1.4e-24 86.6 0.3 4e-24 85.1 0.3 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LexA_DNA_bind PF01726.16 gi|325967873|ref|YP_004244065.1| - 0.062 13.1 0.1 0.25 11.1 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain PaREP1 PF05942.11 gi|325967876|ref|YP_004244068.1| - 1.5e-10 41.0 0.4 1.6e-10 40.9 0.4 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family LTD PF00932.19 gi|325967877|ref|YP_004244069.1| - 0.0048 17.2 0.0 0.0048 17.2 0.0 1.1 1 0 0 1 1 1 1 Lamin Tail Domain CAAD PF14159.6 gi|325967878|ref|YP_004244070.1| - 0.017 14.9 4.6 0.017 14.9 4.6 2.6 3 0 0 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase PrgI PF12666.7 gi|325967878|ref|YP_004244070.1| - 8.7 7.1 19.8 0.17 12.6 3.8 2.7 1 1 1 2 2 2 0 PrgI family protein DUF58 PF01882.18 gi|325967879|ref|YP_004244071.1| - 3.6e-23 81.6 0.0 6.3e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 BatD PF13584.6 gi|325967879|ref|YP_004244071.1| - 0.0084 15.0 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 Oxygen tolerance AAA_3 PF07726.11 gi|325967880|ref|YP_004244072.1| - 1.2e-63 212.8 0.0 1.9e-63 212.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|325967880|ref|YP_004244072.1| - 4.1e-17 61.8 0.0 7.5e-17 60.9 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|325967880|ref|YP_004244072.1| - 6.5e-12 45.6 0.0 1.1e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|325967880|ref|YP_004244072.1| - 0.00018 21.2 0.0 0.0012 18.6 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|325967880|ref|YP_004244072.1| - 0.00068 19.4 0.0 0.0072 16.1 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|325967880|ref|YP_004244072.1| - 0.0044 16.4 0.0 2 7.7 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|325967880|ref|YP_004244072.1| - 0.0044 17.4 0.0 0.029 14.8 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.14 gi|325967880|ref|YP_004244072.1| - 0.041 14.0 0.0 0.55 10.3 0.0 2.3 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) MCM PF00493.23 gi|325967880|ref|YP_004244072.1| - 0.057 12.5 0.0 0.15 11.2 0.0 1.7 1 1 0 1 1 1 0 MCM P-loop domain Wzy_C PF04932.15 gi|325967881|ref|YP_004244073.1| - 0.086 12.5 0.1 0.086 12.5 0.1 3.0 2 1 0 2 2 2 0 O-Antigen ligase FtsL PF04999.13 gi|325967881|ref|YP_004244073.1| - 1.1 9.3 6.8 1.9 8.5 0.1 2.7 3 0 0 3 3 3 0 Cell division protein FtsL DUF4129 PF13559.6 gi|325967882|ref|YP_004244074.1| - 0.0041 17.3 0.0 0.0068 16.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) SP_C-Propep PF08999.10 gi|325967882|ref|YP_004244074.1| - 0.018 14.8 0.0 0.044 13.6 0.0 1.7 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide FtsX PF02687.21 gi|325967882|ref|YP_004244074.1| - 0.093 13.2 4.6 2.8 8.5 0.3 2.4 2 0 0 2 2 2 0 FtsX-like permease family Cation_efflux PF01545.21 gi|325967882|ref|YP_004244074.1| - 0.1 12.3 0.2 0.1 12.3 0.2 1.8 2 0 0 2 2 2 0 Cation efflux family Shisa PF13908.6 gi|325967882|ref|YP_004244074.1| - 0.16 12.2 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF4064 PF13273.6 gi|325967882|ref|YP_004244074.1| - 0.16 12.2 5.2 3.3 8.0 5.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Lactamase_B PF00753.27 gi|325967884|ref|YP_004244076.1| - 1.6e-10 41.3 0.1 2.4e-10 40.7 0.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|325967884|ref|YP_004244076.1| - 2.9e-05 23.7 0.0 4.4e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.28 gi|325967885|ref|YP_004244077.1| - 5e-83 279.0 0.0 5.8e-83 278.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325967885|ref|YP_004244077.1| - 1.4e-20 74.0 0.0 2.9e-20 73.0 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Exo_endo_phos PF03372.23 gi|325967886|ref|YP_004244078.1| - 1.2e-11 44.6 0.0 2.3e-11 43.7 0.0 1.5 1 1 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|325967886|ref|YP_004244078.1| - 1.2e-05 25.1 0.0 2.1e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Sulf_transp PF04143.14 gi|325967887|ref|YP_004244079.1| - 2.7e-27 96.2 18.1 2.7e-27 96.2 18.1 1.8 2 0 0 2 2 2 1 Sulphur transport Ribosomal_S6e PF01092.19 gi|325967888|ref|YP_004244080.1| - 5.1e-28 97.6 0.0 6.8e-28 97.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e Cren7 PF11520.8 gi|325967889|ref|YP_004244081.1| - 1.5e-17 63.2 3.8 1.8e-17 63.0 3.8 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 AceK PF06315.11 gi|325967889|ref|YP_004244081.1| - 0.052 12.0 0.0 0.052 12.0 0.0 1.0 1 0 0 1 1 1 0 Isocitrate dehydrogenase kinase/phosphatase (AceK) UDG PF03167.19 gi|325967890|ref|YP_004244082.1| - 3e-46 157.2 0.0 3.7e-46 156.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Glyco_trans_2_3 PF13632.6 gi|325967891|ref|YP_004244083.1| - 1.6e-16 60.8 3.3 2.9e-16 60.0 3.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|325967891|ref|YP_004244083.1| - 2.8e-11 43.5 0.0 3.9e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325967891|ref|YP_004244083.1| - 1.6e-10 41.3 0.0 2.3e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|325967891|ref|YP_004244083.1| - 1.6e-06 27.7 0.0 2.4e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Pribosyltran PF00156.27 gi|325967892|ref|YP_004244084.1| - 3.2e-10 39.7 0.1 5.1e-10 39.1 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|325967892|ref|YP_004244084.1| - 0.00014 21.3 0.0 0.00024 20.6 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_31 PF13560.6 gi|325967892|ref|YP_004244084.1| - 0.012 15.9 0.0 3.2 8.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain PRTase_2 PF15609.6 gi|325967892|ref|YP_004244084.1| - 0.019 14.5 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Resolvase PF00239.21 gi|325967892|ref|YP_004244084.1| - 0.13 12.4 0.2 0.3 11.2 0.2 1.8 1 1 0 1 1 1 0 Resolvase, N terminal domain ssDBP_DBD PF18361.1 gi|325967893|ref|YP_004244085.1| - 9e-51 171.6 0.8 1.3e-50 171.1 0.8 1.2 1 0 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain ZapB PF06005.12 gi|325967893|ref|YP_004244085.1| - 3.8e-05 24.1 1.7 8e-05 23.0 1.7 1.5 1 0 0 1 1 1 1 Cell division protein ZapB Cep57_CLD_2 PF14197.6 gi|325967893|ref|YP_004244085.1| - 7.8e-05 22.7 4.0 0.00013 21.9 4.0 1.4 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 YabA PF06156.13 gi|325967893|ref|YP_004244085.1| - 0.00025 21.6 0.8 0.00058 20.5 0.8 1.6 1 0 0 1 1 1 1 Initiation control protein YabA bZIP_1 PF00170.21 gi|325967893|ref|YP_004244085.1| - 0.00046 20.2 5.9 0.001 19.1 5.9 1.6 1 0 0 1 1 1 1 bZIP transcription factor DUF3450 PF11932.8 gi|325967893|ref|YP_004244085.1| - 0.0017 17.7 0.1 0.0026 17.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF4164 PF13747.6 gi|325967893|ref|YP_004244085.1| - 0.0055 17.0 2.3 0.012 15.9 2.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4164) TSC22 PF01166.18 gi|325967893|ref|YP_004244085.1| - 0.007 16.6 2.6 0.017 15.4 2.6 1.6 1 0 0 1 1 1 1 TSC-22/dip/bun family JIP_LZII PF16471.5 gi|325967893|ref|YP_004244085.1| - 0.0093 16.1 2.3 0.019 15.1 2.3 1.5 1 0 0 1 1 1 1 JNK-interacting protein leucine zipper II UPF0242 PF06785.11 gi|325967893|ref|YP_004244085.1| - 0.01 16.0 0.9 0.017 15.3 0.9 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus HAP1_N PF04849.13 gi|325967893|ref|YP_004244085.1| - 0.015 14.5 0.8 0.022 14.0 0.8 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region bZIP_2 PF07716.15 gi|325967893|ref|YP_004244085.1| - 0.017 15.2 6.5 0.037 14.1 6.5 1.6 1 0 0 1 1 1 0 Basic region leucine zipper TMF_TATA_bd PF12325.8 gi|325967893|ref|YP_004244085.1| - 0.021 15.0 1.2 0.041 14.1 1.2 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding APG6_N PF17675.1 gi|325967893|ref|YP_004244085.1| - 0.024 15.2 1.9 0.038 14.5 1.9 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region KASH_CCD PF14662.6 gi|325967893|ref|YP_004244085.1| - 0.032 14.1 4.9 0.044 13.6 3.7 1.7 1 1 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH UPF0449 PF15136.6 gi|325967893|ref|YP_004244085.1| - 0.034 14.6 0.1 0.065 13.7 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0449 Shugoshin_N PF07558.11 gi|325967893|ref|YP_004244085.1| - 0.052 13.4 3.0 0.12 12.2 3.0 1.7 1 0 0 1 1 1 0 Shugoshin N-terminal coiled-coil region Cnn_1N PF07989.11 gi|325967893|ref|YP_004244085.1| - 0.061 13.5 4.8 0.18 12.0 4.8 1.8 1 1 0 1 1 1 0 Centrosomin N-terminal motif 1 TMF_DNA_bd PF12329.8 gi|325967893|ref|YP_004244085.1| - 0.064 13.3 4.9 0.13 12.3 4.9 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding HALZ PF02183.18 gi|325967893|ref|YP_004244085.1| - 0.098 12.9 5.5 0.63 10.3 5.5 2.3 1 1 0 1 1 1 0 Homeobox associated leucine zipper DUF4156 PF13698.6 gi|325967893|ref|YP_004244085.1| - 0.1 12.9 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4156) Herpes_BLRF2 PF05812.12 gi|325967893|ref|YP_004244085.1| - 0.11 12.7 2.2 0.19 11.9 2.2 1.5 1 0 0 1 1 1 0 Herpesvirus BLRF2 protein DivIC PF04977.15 gi|325967893|ref|YP_004244085.1| - 0.12 12.2 4.3 0.31 10.9 4.3 1.7 1 1 0 1 1 1 0 Septum formation initiator DUF3552 PF12072.8 gi|325967893|ref|YP_004244085.1| - 0.12 11.7 3.4 0.17 11.3 3.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) SlyX PF04102.12 gi|325967893|ref|YP_004244085.1| - 0.12 13.0 0.2 0.28 11.8 0.2 1.7 1 0 0 1 1 1 0 SlyX NRBF2 PF08961.10 gi|325967893|ref|YP_004244085.1| - 0.13 11.8 1.1 0.19 11.3 1.1 1.3 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator PikAIV_N PF18605.1 gi|325967893|ref|YP_004244085.1| - 6.1 6.5 11.5 1.7 8.3 0.8 2.4 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain PBP PF01161.20 gi|325967894|ref|YP_004244086.1| - 1.1e-25 90.5 0.0 1.4e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF347 PF03988.12 gi|325967894|ref|YP_004244086.1| - 0.046 13.9 1.2 0.046 13.9 1.2 1.8 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) HRG PF16954.5 gi|325967894|ref|YP_004244086.1| - 0.11 12.9 0.3 0.21 12.0 0.3 1.5 1 0 0 1 1 1 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene tRNA_synthFbeta PF17759.1 gi|325967895|ref|YP_004244087.1| - 1.8e-36 125.6 0.0 3.2e-36 124.8 0.0 1.4 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|325967895|ref|YP_004244087.1| - 3.6e-15 56.0 0.0 1e-11 45.0 0.1 2.8 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|325967895|ref|YP_004244087.1| - 2.2e-13 50.2 0.0 4.9e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|325967895|ref|YP_004244087.1| - 0.011 15.9 0.0 0.52 10.6 0.0 2.9 2 1 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain tRNA_deacylase PF04414.12 gi|325967896|ref|YP_004244088.1| - 3.5e-52 176.9 0.0 4.2e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF429 PF04250.13 gi|325967897|ref|YP_004244089.1| - 0.00015 21.7 0.0 0.0019 18.0 0.0 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF429) DUF35_N PF12172.8 gi|325967900|ref|YP_004244092.1| - 1.6e-16 59.9 1.3 2.2e-16 59.4 1.3 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|325967900|ref|YP_004244092.1| - 2.7e-12 46.5 0.1 4.1e-12 45.9 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated HypA PF01155.19 gi|325967900|ref|YP_004244092.1| - 0.0034 17.4 0.1 0.0058 16.6 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|325967900|ref|YP_004244092.1| - 0.0086 16.1 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|325967900|ref|YP_004244092.1| - 0.03 14.1 3.1 0.057 13.1 3.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|325967900|ref|YP_004244092.1| - 0.083 12.4 0.6 3.9 7.1 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|325967900|ref|YP_004244092.1| - 0.2 11.8 5.8 0.75 10.0 5.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|325967900|ref|YP_004244092.1| - 0.63 9.5 5.0 2.7 7.5 0.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Thiolase_N PF00108.23 gi|325967901|ref|YP_004244093.1| - 2.3e-19 69.8 0.6 1.3e-18 67.3 0.6 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|325967901|ref|YP_004244093.1| - 6e-13 48.5 3.3 3.8e-11 42.7 0.0 3.4 4 0 0 4 4 4 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|325967901|ref|YP_004244093.1| - 3.8e-06 26.7 6.2 0.00066 19.3 2.2 2.7 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|325967901|ref|YP_004244093.1| - 9.2e-06 25.4 1.9 0.00029 20.6 0.7 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|325967901|ref|YP_004244093.1| - 0.00028 20.9 0.3 0.17 11.9 0.1 3.4 3 0 0 3 3 3 1 Beta-ketoacyl synthase, C-terminal domain DUF348 PF03990.14 gi|325967901|ref|YP_004244093.1| - 0.074 12.8 0.2 3.5 7.5 0.1 2.7 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Presenilin PF01080.17 gi|325967903|ref|YP_004244095.1| - 3.3e-10 39.3 37.7 2.9e-05 23.0 9.0 2.1 1 1 1 2 2 2 2 Presenilin SPP PF06550.11 gi|325967903|ref|YP_004244095.1| - 0.0013 18.3 29.6 0.0094 15.4 19.1 2.2 2 0 0 2 2 2 2 Signal-peptide peptidase, presenilin aspartyl protease Gemini_mov PF01708.16 gi|325967903|ref|YP_004244095.1| - 0.48 10.2 6.5 7.7 6.4 0.7 3.0 2 1 0 2 2 2 0 Geminivirus putative movement protein Ceramidase PF05875.12 gi|325967903|ref|YP_004244095.1| - 1.3 8.4 17.2 2.2 7.6 10.9 2.3 2 0 0 2 2 2 0 Ceramidase DUF2723 PF11028.8 gi|325967903|ref|YP_004244095.1| - 7 6.5 16.0 0.42 10.5 9.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2723) tRNA-synt_2d PF01409.20 gi|325967904|ref|YP_004244096.1| - 8e-82 274.4 0.0 1.1e-81 274.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|325967904|ref|YP_004244096.1| - 2.8e-06 26.7 0.5 0.07 12.2 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|325967904|ref|YP_004244096.1| - 2.2e-05 24.0 0.0 7e-05 22.4 0.0 1.8 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain HTH_Crp_2 PF13545.6 gi|325967904|ref|YP_004244096.1| - 4.5e-05 23.3 4.1 0.038 14.0 0.0 4.1 4 0 0 4 4 4 2 Crp-like helix-turn-helix domain MarR PF01047.22 gi|325967904|ref|YP_004244096.1| - 0.00082 19.3 1.3 0.017 15.0 0.0 3.5 4 0 0 4 4 4 1 MarR family MarR_2 PF12802.7 gi|325967904|ref|YP_004244096.1| - 0.0033 17.3 2.7 0.027 14.4 0.0 3.3 4 0 0 4 4 4 1 MarR family Rrf2 PF02082.20 gi|325967904|ref|YP_004244096.1| - 0.0058 16.9 0.1 0.27 11.6 0.1 2.6 2 0 0 2 2 2 1 Transcriptional regulator DprA_WH PF17782.1 gi|325967904|ref|YP_004244096.1| - 0.0072 16.4 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 DprA winged helix domain TrmB PF01978.19 gi|325967904|ref|YP_004244096.1| - 0.022 14.7 0.2 0.21 11.5 0.0 2.6 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|325967904|ref|YP_004244096.1| - 0.023 14.3 0.0 1.3 8.7 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|325967904|ref|YP_004244096.1| - 0.03 14.1 0.0 0.54 10.1 0.0 2.9 3 0 0 3 3 3 0 IclR helix-turn-helix domain AAA_assoc_C PF09821.9 gi|325967904|ref|YP_004244096.1| - 0.03 14.8 0.0 0.076 13.6 0.0 1.7 1 0 0 1 1 1 0 C-terminal AAA-associated domain HTH_27 PF13463.6 gi|325967904|ref|YP_004244096.1| - 0.035 14.6 0.0 0.082 13.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|325967904|ref|YP_004244096.1| - 0.055 13.0 0.1 0.72 9.5 0.1 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Dimerisation2 PF16864.5 gi|325967904|ref|YP_004244096.1| - 0.059 13.4 0.0 0.21 11.6 0.0 1.8 2 0 0 2 2 2 0 Dimerisation domain HTH_20 PF12840.7 gi|325967904|ref|YP_004244096.1| - 0.062 13.4 0.0 2.4 8.3 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|325967904|ref|YP_004244096.1| - 0.11 12.4 0.0 0.38 10.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain ETF PF01012.21 gi|325967905|ref|YP_004244097.1| - 4e-45 153.9 3.0 5.5e-45 153.5 3.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TPR_10 PF13374.6 gi|325967905|ref|YP_004244097.1| - 1.9 8.5 6.2 2.7 8.0 0.4 3.2 4 0 0 4 4 4 0 Tetratricopeptide repeat ETF_alpha PF00766.19 gi|325967906|ref|YP_004244098.1| - 8e-31 105.9 0.0 1.6e-30 105.0 0.0 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|325967906|ref|YP_004244098.1| - 1.5e-11 44.5 0.1 2.8e-11 43.6 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain CCG PF02754.16 gi|325967907|ref|YP_004244099.1| - 4.1e-27 94.2 0.3 3.7e-13 49.5 0.3 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|325967907|ref|YP_004244099.1| - 4.3e-11 43.1 3.9 1.2e-10 41.7 3.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325967907|ref|YP_004244099.1| - 2.5e-09 37.1 6.4 2.5e-09 37.1 6.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325967907|ref|YP_004244099.1| - 4.9e-09 36.2 5.8 4.9e-09 36.2 5.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325967907|ref|YP_004244099.1| - 8.7e-08 33.0 5.5 8.7e-08 33.0 5.5 2.2 3 0 0 3 3 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|325967907|ref|YP_004244099.1| - 1e-05 26.0 6.2 1e-05 26.0 6.2 2.7 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325967907|ref|YP_004244099.1| - 3.3e-05 24.4 10.6 0.00026 21.5 10.8 2.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325967907|ref|YP_004244099.1| - 0.00039 20.3 13.0 0.13 12.4 2.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325967907|ref|YP_004244099.1| - 0.0013 19.0 10.6 0.035 14.6 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325967907|ref|YP_004244099.1| - 0.0085 16.2 5.8 0.22 11.7 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|325967907|ref|YP_004244099.1| - 0.028 14.6 2.6 2 8.6 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325967907|ref|YP_004244099.1| - 0.044 13.9 20.4 0.33 11.1 5.1 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|325967907|ref|YP_004244099.1| - 0.061 13.1 1.8 2.6 7.9 0.0 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|325967907|ref|YP_004244099.1| - 0.17 12.8 8.4 2.9 8.8 0.2 3.1 4 0 0 4 4 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325967907|ref|YP_004244099.1| - 0.61 10.0 18.7 0.12 12.3 4.9 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|325967907|ref|YP_004244099.1| - 0.87 10.7 19.6 0.36 11.9 5.2 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|325967907|ref|YP_004244099.1| - 0.88 10.4 7.5 3 8.6 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|325967907|ref|YP_004244099.1| - 6 7.5 10.9 7.3 7.2 2.3 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I RIO1 PF01163.22 gi|325967908|ref|YP_004244100.1| - 8.6e-11 41.8 0.0 1.4e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|325967908|ref|YP_004244100.1| - 3.3e-09 36.5 0.1 8.2e-09 35.2 0.0 1.6 1 1 1 2 2 2 1 Protein kinase domain APH PF01636.23 gi|325967908|ref|YP_004244100.1| - 1.9e-08 34.6 0.0 1.9e-05 24.7 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|325967908|ref|YP_004244100.1| - 9.9e-06 25.1 0.0 5.3e-05 22.7 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.17 gi|325967908|ref|YP_004244100.1| - 0.0029 16.9 0.0 0.0033 16.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|325967908|ref|YP_004244100.1| - 0.006 16.2 0.3 0.0095 15.6 0.3 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Ribosomal_S13_N PF08069.12 gi|325967909|ref|YP_004244101.1| - 5.4e-25 87.2 0.2 9.1e-25 86.5 0.2 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|325967909|ref|YP_004244101.1| - 1.8e-14 53.7 0.0 2.5e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 MFS_5 PF05631.14 gi|325967909|ref|YP_004244101.1| - 0.094 11.6 0.0 0.1 11.5 0.0 1.0 1 0 0 1 1 1 0 Sugar-tranasporters, 12 TM UPF0179 PF03684.13 gi|325967910|ref|YP_004244102.1| - 8.6e-30 103.5 0.8 9.9e-30 103.3 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Peptidase_M42 PF05343.14 gi|325967911|ref|YP_004244103.1| - 1.1e-87 293.7 0.0 1.3e-87 293.5 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|325967911|ref|YP_004244103.1| - 1.7e-07 31.2 0.0 3.9e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 gi|325967911|ref|YP_004244103.1| - 8.4e-06 25.6 0.0 1.3e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Gp_dh_C PF02800.20 gi|325967912|ref|YP_004244104.1| - 1.7e-17 63.4 0.0 2.7e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|325967912|ref|YP_004244104.1| - 3.4e-11 43.3 0.3 6.4e-11 42.4 0.3 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|325967912|ref|YP_004244104.1| - 0.00033 21.0 1.7 0.0029 17.9 1.0 2.8 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|325967912|ref|YP_004244104.1| - 0.002 19.0 0.0 0.0041 18.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|325967912|ref|YP_004244104.1| - 0.012 15.0 3.0 0.073 12.4 0.6 2.6 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|325967912|ref|YP_004244104.1| - 0.023 15.3 0.1 0.087 13.5 0.0 2.0 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|325967912|ref|YP_004244104.1| - 0.042 14.4 0.5 0.46 11.1 0.5 2.4 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|325967912|ref|YP_004244104.1| - 0.12 12.6 0.1 0.28 11.4 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PGK PF00162.19 gi|325967913|ref|YP_004244105.1| - 5.3e-101 338.3 0.1 7.1e-101 337.9 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase SBP_bac_8 PF13416.6 gi|325967913|ref|YP_004244105.1| - 0.057 13.2 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein KH_1 PF00013.29 gi|325967914|ref|YP_004244106.1| - 9.5e-06 25.4 4.6 0.044 13.6 0.7 2.3 2 0 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|325967914|ref|YP_004244106.1| - 0.016 15.3 0.1 0.031 14.4 0.1 1.5 1 0 0 1 1 1 0 Krr1 KH1 domain HTH_23 PF13384.6 gi|325967914|ref|YP_004244106.1| - 0.054 13.3 2.0 0.098 12.5 0.7 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Pox_vIL-18BP PF05566.12 gi|325967914|ref|YP_004244106.1| - 0.058 13.6 0.1 0.092 13.0 0.1 1.3 1 0 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein HTH_1 PF00126.27 gi|325967914|ref|YP_004244106.1| - 0.067 13.2 0.0 0.18 11.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF4974 PF16344.5 gi|325967914|ref|YP_004244106.1| - 0.52 10.4 4.2 0.28 11.2 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) Pcc1 PF09341.10 gi|325967915|ref|YP_004244107.1| - 0.06 13.5 0.1 0.11 12.6 0.1 1.5 1 1 0 1 1 1 0 Transcription factor Pcc1 DUF1617 PF07761.12 gi|325967916|ref|YP_004244108.1| - 0.0071 16.4 0.2 3.8 7.6 0.1 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF1617) Radical_SAM PF04055.21 gi|325967917|ref|YP_004244109.1| - 1.5e-22 80.8 0.6 5.4e-22 78.9 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|325967917|ref|YP_004244109.1| - 3.7e-06 27.1 0.1 1.5e-05 25.1 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|325967917|ref|YP_004244109.1| - 3.4e-05 24.1 0.0 7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ComA PF02679.15 gi|325967917|ref|YP_004244109.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) zf-Di19 PF05605.12 gi|325967917|ref|YP_004244109.1| - 2.7 8.4 5.6 11 6.5 0.2 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding TrmB PF01978.19 gi|325967918|ref|YP_004244110.1| - 2.9e-19 68.7 0.2 6e-19 67.7 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|325967918|ref|YP_004244110.1| - 4.7e-05 23.1 0.0 0.0015 18.3 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|325967918|ref|YP_004244110.1| - 0.054 13.1 0.0 0.38 10.3 0.0 2.4 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|325967918|ref|YP_004244110.1| - 0.088 12.9 0.0 0.4 10.8 0.0 2.1 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|325967918|ref|YP_004244110.1| - 0.11 12.8 0.0 0.27 11.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator tRNA-synt_2b PF00587.25 gi|325967919|ref|YP_004244111.1| - 9.8e-37 126.6 0.0 1.9e-36 125.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|325967919|ref|YP_004244111.1| - 8.4e-23 80.7 8.0 1.5e-22 79.9 8.0 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain APG6_N PF17675.1 gi|325967919|ref|YP_004244111.1| - 0.007 16.9 5.3 0.014 15.9 5.3 1.4 1 0 0 1 1 1 1 Apg6 coiled-coil region HCMV_UL139 PF12507.8 gi|325967919|ref|YP_004244111.1| - 0.03 14.7 0.9 0.067 13.6 0.9 1.6 1 0 0 1 1 1 0 Human Cytomegalovirus UL139 protein DUF4407 PF14362.6 gi|325967919|ref|YP_004244111.1| - 0.089 12.1 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF948 PF06103.11 gi|325967919|ref|YP_004244111.1| - 0.17 12.2 0.3 0.4 11.0 0.3 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) ZapB PF06005.12 gi|325967919|ref|YP_004244111.1| - 0.57 10.7 10.1 7.2 7.1 10.1 2.3 1 1 0 1 1 1 0 Cell division protein ZapB CRA PF06589.11 gi|325967919|ref|YP_004244111.1| - 1.4 9.1 5.8 2.3 8.3 5.8 1.3 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) DivIC PF04977.15 gi|325967919|ref|YP_004244111.1| - 3.6 7.4 7.8 2.2 8.1 0.1 2.5 1 1 1 2 2 2 0 Septum formation initiator FlaC_arch PF05377.11 gi|325967919|ref|YP_004244111.1| - 3.6 8.0 6.5 33 5.0 0.1 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) eIF-4B PF06273.11 gi|325967919|ref|YP_004244111.1| - 6.1 5.8 6.3 8.8 5.3 6.3 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B TPP_enzyme_C PF02775.21 gi|325967920|ref|YP_004244112.1| - 2.9e-22 79.1 0.2 4.4e-22 78.5 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|325967920|ref|YP_004244112.1| - 0.0028 16.9 0.0 0.0036 16.6 0.0 1.1 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|325967920|ref|YP_004244112.1| - 0.075 12.0 0.3 0.11 11.5 0.3 1.1 1 0 0 1 1 1 0 Dehydrogenase E1 component POR_N PF01855.19 gi|325967921|ref|YP_004244113.1| - 1.5e-63 214.7 0.2 1.8e-63 214.4 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|325967921|ref|YP_004244113.1| - 2.2e-24 85.7 0.0 7.3e-24 84.0 0.0 2.0 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|325967921|ref|YP_004244113.1| - 0.0006 19.7 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|325967921|ref|YP_004244113.1| - 0.0049 16.5 0.8 0.0077 15.9 0.8 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.27 gi|325967922|ref|YP_004244114.1| - 1.7e-16 59.2 17.7 1.2e-08 34.4 6.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325967922|ref|YP_004244114.1| - 2.7e-13 50.3 19.5 1.6e-09 38.2 9.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325967922|ref|YP_004244114.1| - 4.7e-11 42.3 13.9 1.3e-05 25.1 4.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325967922|ref|YP_004244114.1| - 6.3e-11 42.2 9.1 7.9e-11 41.9 9.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325967922|ref|YP_004244114.1| - 3.9e-10 40.5 8.1 1.8e-05 25.5 1.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|325967922|ref|YP_004244114.1| - 6.2e-09 35.8 21.8 6.1e-06 26.3 11.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325967922|ref|YP_004244114.1| - 9.9e-09 34.8 12.2 4.3e-05 23.3 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325967922|ref|YP_004244114.1| - 6.1e-08 32.7 9.4 1.2e-07 31.8 9.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325967922|ref|YP_004244114.1| - 9.3e-07 29.3 3.1 0.016 15.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|325967922|ref|YP_004244114.1| - 6.1e-05 23.4 10.1 0.01 16.3 1.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|325967922|ref|YP_004244114.1| - 0.00033 21.3 10.2 0.16 12.7 0.4 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|325967922|ref|YP_004244114.1| - 0.00077 20.0 10.2 0.02 15.4 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|325967922|ref|YP_004244114.1| - 0.0013 19.1 13.8 0.03 14.8 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|325967922|ref|YP_004244114.1| - 0.016 16.1 10.5 0.073 13.9 1.5 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain DUF5412 PF17428.2 gi|325967922|ref|YP_004244114.1| - 0.033 14.0 0.1 0.044 13.6 0.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5412) MerT PF02411.15 gi|325967922|ref|YP_004244114.1| - 0.057 13.5 0.1 0.08 13.0 0.1 1.2 1 0 0 1 1 1 0 MerT mercuric transport protein Fer4_3 PF12798.7 gi|325967922|ref|YP_004244114.1| - 0.093 13.7 6.0 0.093 13.7 6.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF3343 PF11823.8 gi|325967922|ref|YP_004244114.1| - 0.37 10.3 4.3 5.5 6.5 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3343) Fer4_18 PF13746.6 gi|325967922|ref|YP_004244114.1| - 0.82 9.9 10.2 2.8 8.1 2.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|325967922|ref|YP_004244114.1| - 3.4 7.9 8.7 12 6.1 8.9 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR PF01558.18 gi|325967923|ref|YP_004244115.1| - 5.1e-27 95.1 0.1 1.3e-26 93.8 0.1 1.5 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF711 PF05167.12 gi|325967923|ref|YP_004244115.1| - 0.074 11.9 0.4 0.24 10.2 0.3 1.8 2 0 0 2 2 2 0 Uncharacterised ACR (DUF711) CxxCxxCC PF03692.15 gi|325967924|ref|YP_004244116.1| - 1.3e-17 64.2 1.5 1.9e-17 63.7 1.5 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|325967924|ref|YP_004244116.1| - 1.7 8.4 5.8 15 5.3 5.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3109) Thiamine_BP PF01910.17 gi|325967925|ref|YP_004244117.1| - 4.6e-26 90.6 0.4 5.2e-26 90.4 0.4 1.0 1 0 0 1 1 1 1 Thiamine-binding protein E1-E2_ATPase PF00122.20 gi|325967926|ref|YP_004244118.1| - 1e-47 162.0 1.2 1e-47 162.0 1.2 2.5 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|325967926|ref|YP_004244118.1| - 1.2e-43 149.8 0.7 2.2e-43 149.0 0.7 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|325967926|ref|YP_004244118.1| - 1.9e-19 69.9 2.6 4.8e-15 55.7 0.1 3.4 4 0 0 4 4 4 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|325967926|ref|YP_004244118.1| - 4.4e-06 26.6 0.8 0.00018 21.4 0.5 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|325967926|ref|YP_004244118.1| - 5.8e-06 26.8 0.0 1.8e-05 25.2 0.0 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HepII_C PF18675.1 gi|325967926|ref|YP_004244118.1| - 0.00076 19.5 0.0 0.13 12.3 0.0 2.5 2 0 0 2 2 2 1 Heparinase II C-terminal domain Hydrolase_6 PF13344.6 gi|325967926|ref|YP_004244118.1| - 0.13 12.4 0.0 0.64 10.2 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Cupin_3 PF05899.12 gi|325967926|ref|YP_004244118.1| - 0.14 11.9 0.1 2 8.2 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF861) YHS PF04945.13 gi|325967927|ref|YP_004244119.1| - 9.6e-19 67.2 1.2 1.2e-18 67.0 1.2 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|325967927|ref|YP_004244119.1| - 0.00025 21.3 1.9 0.00039 20.7 1.9 1.4 1 1 0 1 1 1 1 Archaeal TRASH domain FAP206 PF12018.8 gi|325967927|ref|YP_004244119.1| - 0.0093 15.5 0.1 0.012 15.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function zf-FCS PF06467.14 gi|325967927|ref|YP_004244119.1| - 0.014 15.3 0.6 0.023 14.6 0.5 1.4 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif HTH_24 PF13412.6 gi|325967928|ref|YP_004244120.1| - 2.8e-14 52.4 0.6 6.3e-14 51.3 0.6 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Arc_trans_TRASH PF08394.10 gi|325967928|ref|YP_004244120.1| - 5.9e-14 52.1 7.4 1.1e-13 51.3 7.4 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_AsnC-type PF13404.6 gi|325967928|ref|YP_004244120.1| - 8.9e-10 38.2 1.2 1.6e-09 37.4 1.2 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|325967928|ref|YP_004244120.1| - 9.7e-10 38.2 0.0 1.8e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|325967928|ref|YP_004244120.1| - 1.1e-09 38.0 0.4 2.5e-09 36.9 0.1 1.7 2 0 0 2 2 1 1 MarR family TrmB PF01978.19 gi|325967928|ref|YP_004244120.1| - 7.6e-09 35.3 0.0 1.3e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|325967928|ref|YP_004244120.1| - 1.4e-08 34.6 0.6 4.2e-08 33.0 0.1 2.1 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|325967928|ref|YP_004244120.1| - 3.8e-07 29.8 0.0 7.1e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|325967928|ref|YP_004244120.1| - 2.6e-06 27.0 0.5 5.9e-06 25.9 0.5 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|325967928|ref|YP_004244120.1| - 3e-06 27.1 0.0 6.5e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|325967928|ref|YP_004244120.1| - 7.4e-06 25.9 0.1 1.6e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|325967928|ref|YP_004244120.1| - 8e-06 25.6 0.0 1.7e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|325967928|ref|YP_004244120.1| - 1.6e-05 24.9 0.0 3.3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|325967928|ref|YP_004244120.1| - 4.4e-05 23.0 0.1 8.4e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|325967928|ref|YP_004244120.1| - 4.6e-05 23.3 0.0 8.8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.6 gi|325967928|ref|YP_004244120.1| - 5.8e-05 22.8 1.2 5.8e-05 22.8 1.2 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|325967928|ref|YP_004244120.1| - 9.4e-05 21.8 0.4 0.0002 20.8 0.4 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|325967928|ref|YP_004244120.1| - 0.00049 20.1 0.2 0.0036 17.3 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_17 PF12728.7 gi|325967928|ref|YP_004244120.1| - 0.00055 20.1 0.3 0.0045 17.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain RPA_C PF08784.11 gi|325967928|ref|YP_004244120.1| - 0.00067 20.3 0.0 0.001 19.7 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal LacI PF00356.21 gi|325967928|ref|YP_004244120.1| - 0.00085 19.1 0.4 0.0019 17.9 0.4 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_10 PF04967.12 gi|325967928|ref|YP_004244120.1| - 0.00098 18.9 0.5 0.0026 17.5 0.1 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_3 PF01381.22 gi|325967928|ref|YP_004244120.1| - 0.0011 19.0 0.2 0.0027 17.7 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_27 PF13463.6 gi|325967928|ref|YP_004244120.1| - 0.0011 19.4 0.0 0.0019 18.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TetR_N PF00440.23 gi|325967928|ref|YP_004244120.1| - 0.0011 18.7 0.1 0.0024 17.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_31 PF13560.6 gi|325967928|ref|YP_004244120.1| - 0.0011 19.2 0.5 0.002 18.4 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|325967928|ref|YP_004244120.1| - 0.0015 18.2 0.1 0.0026 17.5 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_22 PF13309.6 gi|325967928|ref|YP_004244120.1| - 0.0021 18.1 0.5 0.0047 17.0 0.1 1.8 2 0 0 2 2 1 1 HTH domain HTH_6 PF01418.17 gi|325967928|ref|YP_004244120.1| - 0.0025 17.7 0.3 0.005 16.8 0.1 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family Cys_rich_CPXG PF14255.6 gi|325967928|ref|YP_004244120.1| - 0.0026 17.6 0.2 0.0057 16.5 0.2 1.6 1 0 0 1 1 1 1 Cysteine-rich CPXCG HTH_28 PF13518.6 gi|325967928|ref|YP_004244120.1| - 0.0027 17.8 0.0 0.0059 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|325967928|ref|YP_004244120.1| - 0.0028 17.0 1.4 0.0046 16.3 0.5 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.19 gi|325967928|ref|YP_004244120.1| - 0.0032 17.6 0.0 0.0057 16.8 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF977 PF06163.11 gi|325967928|ref|YP_004244120.1| - 0.0041 17.1 0.3 0.0072 16.3 0.3 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) Mga PF05043.13 gi|325967928|ref|YP_004244120.1| - 0.005 17.4 0.0 0.0095 16.5 0.0 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain GerE PF00196.19 gi|325967928|ref|YP_004244120.1| - 0.0064 16.0 0.1 0.014 14.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Penicillinase_R PF03965.16 gi|325967928|ref|YP_004244120.1| - 0.0069 16.7 0.0 0.017 15.4 0.0 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_CodY PF08222.11 gi|325967928|ref|YP_004244120.1| - 0.0085 15.6 0.6 0.018 14.6 0.6 1.5 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_8 PF02954.19 gi|325967928|ref|YP_004244120.1| - 0.0099 15.6 0.1 0.019 14.8 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family FeoC PF09012.10 gi|325967928|ref|YP_004244120.1| - 0.01 15.9 0.0 0.79 9.8 0.0 2.4 2 0 0 2 2 2 0 FeoC like transcriptional regulator Zn_ribbon_recom PF13408.6 gi|325967928|ref|YP_004244120.1| - 0.011 16.2 4.1 0.018 15.5 4.1 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Sigma70_r4_2 PF08281.12 gi|325967928|ref|YP_004244120.1| - 0.015 14.9 0.7 0.03 14.0 0.1 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|325967928|ref|YP_004244120.1| - 0.016 15.2 0.1 0.03 14.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|325967928|ref|YP_004244120.1| - 0.018 15.3 0.0 0.04 14.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Trp_repressor PF01371.19 gi|325967928|ref|YP_004244120.1| - 0.022 14.9 0.3 0.043 13.9 0.3 1.5 1 0 0 1 1 1 0 Trp repressor protein Crp PF00325.20 gi|325967928|ref|YP_004244120.1| - 0.027 14.1 0.2 0.088 12.5 0.1 2.0 2 0 0 2 2 1 0 Bacterial regulatory proteins, crp family HU-CCDC81_euk_2 PF18289.1 gi|325967928|ref|YP_004244120.1| - 0.044 13.9 0.2 1.9 8.7 0.0 2.3 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 HTH_Tnp_4 PF13613.6 gi|325967928|ref|YP_004244120.1| - 0.076 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease HTH_9 PF08221.11 gi|325967928|ref|YP_004244120.1| - 0.083 13.0 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Phage_pRha PF09669.10 gi|325967928|ref|YP_004244120.1| - 0.12 13.0 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) Spo0A_C PF08769.11 gi|325967928|ref|YP_004244120.1| - 0.12 12.4 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Sporulation initiation factor Spo0A C terminal Phage_CI_repr PF07022.13 gi|325967928|ref|YP_004244120.1| - 0.16 12.0 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_AraC PF00165.23 gi|325967928|ref|YP_004244120.1| - 0.17 12.0 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family Glyco_hydro_57 PF03065.15 gi|325967930|ref|YP_004244122.1| - 6.4e-46 157.1 1.2 3e-43 148.3 1.2 2.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 BPD_transp_1 PF00528.22 gi|325967931|ref|YP_004244123.1| - 9.9e-16 58.0 24.5 9.9e-16 58.0 24.5 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4500 PF14937.6 gi|325967931|ref|YP_004244123.1| - 0.65 10.0 3.5 6.7 6.8 0.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4500) BPD_transp_1 PF00528.22 gi|325967932|ref|YP_004244124.1| - 1.2e-15 57.7 23.6 1.2e-15 57.7 23.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|325967932|ref|YP_004244124.1| - 0.092 12.9 2.6 0.27 11.4 2.6 1.8 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_8 PF13416.6 gi|325967933|ref|YP_004244125.1| - 5.5e-20 72.3 4.1 5.5e-20 72.3 4.1 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein VSP PF03302.13 gi|325967933|ref|YP_004244125.1| - 0.017 14.0 4.5 0.027 13.4 4.5 1.2 1 0 0 1 1 1 0 Giardia variant-specific surface protein Pilin_N PF07790.11 gi|325967933|ref|YP_004244125.1| - 0.43 11.5 6.2 1.4 9.9 6.2 2.0 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Podoplanin PF05808.11 gi|325967933|ref|YP_004244125.1| - 7.8 6.6 5.9 15 5.6 5.9 1.5 1 0 0 1 1 1 0 Podoplanin Alpha-amylase PF00128.24 gi|325967934|ref|YP_004244126.1| - 2.4e-44 152.3 0.4 2.9e-28 99.4 0.3 2.9 1 1 1 2 2 2 2 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|325967934|ref|YP_004244126.1| - 4.2e-07 30.1 0.0 1.1e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 Glycogen recognition site of AMP-activated protein kinase ThiS PF02597.20 gi|325967935|ref|YP_004244127.1| - 2e-12 47.6 0.1 2.4e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|325967935|ref|YP_004244127.1| - 0.00064 20.0 0.0 0.00071 19.9 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) PB1 PF00564.24 gi|325967935|ref|YP_004244127.1| - 0.12 12.3 0.0 0.79 9.7 0.0 2.0 2 0 0 2 2 2 0 PB1 domain tRNA-synt_1f PF01921.18 gi|325967936|ref|YP_004244128.1| - 1e-99 333.9 0.1 1.5e-99 333.4 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) DUF1474 PF07342.11 gi|325967936|ref|YP_004244128.1| - 0.058 13.9 0.4 0.8 10.3 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1474) zinc_ribbon_10 PF10058.9 gi|325967936|ref|YP_004244128.1| - 0.087 12.6 0.3 0.2 11.4 0.3 1.6 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-RING_7 PF02591.15 gi|325967936|ref|YP_004244128.1| - 0.26 11.5 1.0 1.5 9.1 0.2 2.4 2 0 0 2 2 2 0 C4-type zinc ribbon domain DUF1211 PF06736.11 gi|325967937|ref|YP_004244129.1| - 0.049 14.1 3.9 0.099 13.1 3.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1211) TMEM169 PF15052.6 gi|325967937|ref|YP_004244129.1| - 0.88 9.7 11.8 0.091 12.9 3.0 2.1 2 0 0 2 2 2 0 TMEM169 protein family Spc7 PF08317.11 gi|325967938|ref|YP_004244130.1| - 7.6e-10 38.2 93.2 0.0013 17.7 11.5 4.7 1 1 4 5 5 5 4 Spc7 kinetochore protein DUF3552 PF12072.8 gi|325967938|ref|YP_004244130.1| - 2.9e-07 30.1 106.5 0.0032 16.9 18.8 6.2 2 2 4 6 6 6 4 Domain of unknown function (DUF3552) AAA_13 PF13166.6 gi|325967938|ref|YP_004244130.1| - 2.3e-06 26.6 72.0 0.0058 15.3 18.0 3.8 1 1 3 4 4 4 4 AAA domain TACC_C PF05010.14 gi|325967938|ref|YP_004244130.1| - 3e-05 23.9 8.0 3e-05 23.9 8.0 4.2 1 1 0 3 3 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal FPP PF05911.11 gi|325967938|ref|YP_004244130.1| - 0.00049 18.4 51.1 0.00049 18.4 51.1 2.3 1 1 1 2 2 2 1 Filament-like plant protein, long coiled-coil DUF948 PF06103.11 gi|325967938|ref|YP_004244130.1| - 0.0005 20.3 42.3 0.045 14.0 2.2 6.7 4 2 3 7 7 7 3 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|325967938|ref|YP_004244130.1| - 0.00051 20.4 47.9 1 9.9 2.8 7.5 3 2 3 6 6 6 2 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|325967938|ref|YP_004244130.1| - 0.00057 19.9 58.5 0.5 10.4 14.9 6.3 1 1 3 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus MscS_porin PF12795.7 gi|325967938|ref|YP_004244130.1| - 0.0012 18.4 86.6 0.14 11.7 9.2 5.8 1 1 4 5 5 5 3 Mechanosensitive ion channel porin domain YkyA PF10368.9 gi|325967938|ref|YP_004244130.1| - 0.0013 18.4 4.9 0.0013 18.4 4.9 6.0 1 1 4 5 5 5 1 Putative cell-wall binding lipoprotein LXG PF04740.12 gi|325967938|ref|YP_004244130.1| - 0.0014 18.4 15.7 0.0014 18.4 15.7 5.2 2 1 1 3 3 1 1 LXG domain of WXG superfamily Sec34 PF04136.15 gi|325967938|ref|YP_004244130.1| - 0.0017 18.2 59.8 0.071 13.0 5.2 6.4 2 1 1 6 6 6 4 Sec34-like family OmpH PF03938.14 gi|325967938|ref|YP_004244130.1| - 0.0025 18.2 79.5 0.12 12.7 8.6 6.1 1 1 5 6 6 6 3 Outer membrane protein (OmpH-like) Laminin_I PF06008.14 gi|325967938|ref|YP_004244130.1| - 0.0027 17.4 17.4 0.0027 17.4 17.4 3.5 1 1 2 3 3 2 1 Laminin Domain I ATG16 PF08614.11 gi|325967938|ref|YP_004244130.1| - 0.0031 17.8 94.0 2.6 8.2 40.7 5.2 1 1 3 4 4 4 1 Autophagy protein 16 (ATG16) Fez1 PF06818.15 gi|325967938|ref|YP_004244130.1| - 0.0041 17.6 80.3 1.1 9.7 21.2 5.1 1 1 4 5 5 5 2 Fez1 HAUS-augmin3 PF14932.6 gi|325967938|ref|YP_004244130.1| - 0.0054 16.3 79.6 0.014 15.0 6.1 5.2 1 1 3 5 5 5 2 HAUS augmin-like complex subunit 3 Atg14 PF10186.9 gi|325967938|ref|YP_004244130.1| - 0.0057 15.8 79.5 0.062 12.4 13.0 4.3 1 1 3 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 Occludin_ELL PF07303.13 gi|325967938|ref|YP_004244130.1| - 0.035 14.8 2.2 0.035 14.8 2.2 7.2 1 1 9 10 10 9 0 Occludin homology domain DUF4200 PF13863.6 gi|325967938|ref|YP_004244130.1| - 0.055 13.9 96.7 0.046 14.1 4.0 6.5 2 1 4 6 6 6 0 Domain of unknown function (DUF4200) Syntaxin_2 PF14523.6 gi|325967938|ref|YP_004244130.1| - 0.12 12.8 64.8 0.028 14.8 7.4 6.4 3 2 2 5 5 4 0 Syntaxin-like protein IFT57 PF10498.9 gi|325967938|ref|YP_004244130.1| - 0.32 9.9 75.7 0.086 11.8 6.4 6.1 1 1 6 7 7 7 0 Intra-flagellar transport protein 57 CHASE9 PF17153.4 gi|325967938|ref|YP_004244130.1| - 0.34 11.1 11.8 0.4 10.9 1.2 3.7 3 1 0 3 3 3 0 Periplasmic sensor domain, extracellular DUF812 PF05667.11 gi|325967938|ref|YP_004244130.1| - 0.47 9.3 82.9 0.63 8.9 42.9 3.7 1 1 3 4 4 4 0 Protein of unknown function (DUF812) DUF4407 PF14362.6 gi|325967938|ref|YP_004244130.1| - 0.48 9.7 50.9 0.24 10.7 4.7 4.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) DUF1664 PF07889.12 gi|325967938|ref|YP_004244130.1| - 0.53 10.3 60.3 0.41 10.7 2.5 7.1 1 1 6 8 8 8 0 Protein of unknown function (DUF1664) Exonuc_VII_L PF02601.15 gi|325967938|ref|YP_004244130.1| - 0.6 9.6 72.5 1.6 8.2 11.1 4.1 1 1 2 4 4 4 0 Exonuclease VII, large subunit WXG100 PF06013.12 gi|325967938|ref|YP_004244130.1| - 0.71 10.2 35.5 0.17 12.2 2.1 8.2 4 3 3 7 7 7 0 Proteins of 100 residues with WXG Laminin_II PF06009.12 gi|325967938|ref|YP_004244130.1| - 0.94 9.5 72.9 0.06 13.4 11.7 5.9 1 1 7 8 8 8 0 Laminin Domain II ApoO PF09769.9 gi|325967938|ref|YP_004244130.1| - 1.5 8.8 20.2 5.9 6.9 0.4 5.9 3 2 4 7 7 7 0 Apolipoprotein O MCPsignal PF00015.21 gi|325967938|ref|YP_004244130.1| - 1.5 8.6 32.9 0.15 11.9 5.9 5.1 3 1 2 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FliD_N PF02465.18 gi|325967938|ref|YP_004244130.1| - 1.7 9.4 49.4 0.4 11.4 0.5 7.0 3 2 1 4 4 3 0 Flagellar hook-associated protein 2 N-terminus DUF3584 PF12128.8 gi|325967938|ref|YP_004244130.1| - 1.8 6.0 71.9 1.8 6.0 6.9 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3584) Mce4_CUP1 PF11887.8 gi|325967938|ref|YP_004244130.1| - 1.8 8.0 21.0 0.082 12.3 4.5 3.9 3 2 1 5 5 5 0 Cholesterol uptake porter CUP1 of Mce4, putative Jnk-SapK_ap_N PF09744.9 gi|325967938|ref|YP_004244130.1| - 3.3 7.9 90.5 0.07 13.4 4.0 5.9 1 1 6 7 7 6 0 JNK_SAPK-associated protein-1 ALIX_LYPXL_bnd PF13949.6 gi|325967938|ref|YP_004244130.1| - 8.5 5.6 74.1 0.092 12.0 29.4 3.5 1 1 2 3 3 2 0 ALIX V-shaped domain binding to HIV DUF2203 PF09969.9 gi|325967938|ref|YP_004244130.1| - 8.6 7.1 57.6 1.5 9.5 1.6 6.6 1 1 5 6 6 5 0 Uncharacterized conserved protein (DUF2203) AI-2E_transport PF01594.16 gi|325967938|ref|YP_004244130.1| - 10 5.2 20.4 5.7 6.0 2.2 4.0 2 1 2 4 4 4 0 AI-2E family transporter Laminin_II PF06009.12 gi|325967939|ref|YP_004244131.1| - 4.5e-06 26.7 6.4 0.0026 17.8 1.6 2.1 2 0 0 2 2 2 2 Laminin Domain II Baculo_PEP_C PF04513.12 gi|325967939|ref|YP_004244131.1| - 1.3e-05 25.3 13.2 0.00035 20.6 2.7 2.6 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|325967939|ref|YP_004244131.1| - 3.6e-05 24.0 6.9 0.02 15.2 0.2 3.2 2 1 1 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|325967939|ref|YP_004244131.1| - 5.6e-05 23.2 6.4 0.0051 16.9 0.2 2.4 2 1 0 2 2 2 2 Protein of unknown function (DUF1664) HSBP1 PF06825.12 gi|325967939|ref|YP_004244131.1| - 0.00049 19.9 3.8 0.053 13.4 1.6 3.1 2 1 0 2 2 2 1 Heat shock factor binding protein 1 AAA_13 PF13166.6 gi|325967939|ref|YP_004244131.1| - 0.00058 18.6 3.5 0.0023 16.7 3.1 1.8 1 1 1 2 2 2 2 AAA domain Spectrin PF00435.21 gi|325967939|ref|YP_004244131.1| - 0.001 19.5 1.2 1.1 9.8 0.3 2.6 2 1 0 2 2 2 1 Spectrin repeat COG2 PF06148.11 gi|325967939|ref|YP_004244131.1| - 0.0014 18.8 7.6 0.29 11.2 0.5 2.5 1 1 1 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 NPV_P10 PF05531.12 gi|325967939|ref|YP_004244131.1| - 0.0014 19.0 10.7 0.057 13.9 0.7 3.0 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|325967939|ref|YP_004244131.1| - 0.0014 17.5 5.7 0.0049 15.8 5.9 1.7 1 1 0 1 1 1 1 Spc7 kinetochore protein MtrB PF05440.12 gi|325967939|ref|YP_004244131.1| - 0.0018 18.6 1.3 0.029 14.8 0.1 2.8 1 1 3 4 4 4 1 Tetrahydromethanopterin S-methyltransferase subunit B HsbA PF12296.8 gi|325967939|ref|YP_004244131.1| - 0.0023 18.3 0.4 2.3 8.7 0.0 3.0 1 1 0 3 3 3 0 Hydrophobic surface binding protein A Uds1 PF15456.6 gi|325967939|ref|YP_004244131.1| - 0.0069 16.6 3.8 0.64 10.2 0.2 2.5 1 1 1 2 2 2 1 Up-regulated During Septation Snapin_Pallidin PF14712.6 gi|325967939|ref|YP_004244131.1| - 0.0073 16.7 8.6 0.18 12.2 0.5 2.9 1 1 2 3 3 3 1 Snapin/Pallidin XhlA PF10779.9 gi|325967939|ref|YP_004244131.1| - 0.0094 16.1 8.0 0.022 14.9 1.1 3.1 2 1 2 4 4 4 1 Haemolysin XhlA MCPsignal PF00015.21 gi|325967939|ref|YP_004244131.1| - 0.011 15.6 5.1 0.73 9.6 0.1 2.6 1 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DHR10 PF18595.1 gi|325967939|ref|YP_004244131.1| - 0.011 15.8 5.5 1.3 9.1 1.4 2.7 2 1 1 3 3 3 0 Designed helical repeat protein 10 domain DUF3450 PF11932.8 gi|325967939|ref|YP_004244131.1| - 0.012 15.0 4.5 0.53 9.5 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) TBK1_CCD1 PF18394.1 gi|325967939|ref|YP_004244131.1| - 0.012 15.2 8.4 0.21 11.1 4.2 2.1 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 IFT57 PF10498.9 gi|325967939|ref|YP_004244131.1| - 0.013 14.5 6.7 0.52 9.2 1.3 2.5 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|325967939|ref|YP_004244131.1| - 0.014 15.6 2.1 0.014 15.6 2.1 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Sec34 PF04136.15 gi|325967939|ref|YP_004244131.1| - 0.017 15.0 6.2 0.27 11.1 0.4 2.4 1 1 0 2 2 2 0 Sec34-like family MscS_porin PF12795.7 gi|325967939|ref|YP_004244131.1| - 0.018 14.6 8.7 0.71 9.4 2.2 2.9 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain FliJ PF02050.16 gi|325967939|ref|YP_004244131.1| - 0.02 15.1 0.7 0.26 11.5 0.0 2.4 1 1 1 2 2 2 0 Flagellar FliJ protein Tweety PF04906.13 gi|325967939|ref|YP_004244131.1| - 0.021 13.5 3.7 0.033 12.9 1.8 1.9 1 1 1 2 2 2 0 Tweety STAT_alpha PF01017.20 gi|325967939|ref|YP_004244131.1| - 0.023 14.6 1.9 0.048 13.6 1.7 1.8 1 1 0 1 1 1 0 STAT protein, all-alpha domain DUF4665 PF15679.5 gi|325967939|ref|YP_004244131.1| - 0.034 14.8 1.2 8.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4665) CENP-Q PF13094.6 gi|325967939|ref|YP_004244131.1| - 0.042 14.0 2.4 7.7 6.7 0.0 2.9 2 1 1 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2034 PF10356.9 gi|325967939|ref|YP_004244131.1| - 0.043 13.2 0.1 0.16 11.3 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2034) AIP3 PF03915.13 gi|325967939|ref|YP_004244131.1| - 0.045 12.8 3.3 0.057 12.5 3.3 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 ApoC-I PF04691.12 gi|325967939|ref|YP_004244131.1| - 0.051 13.5 0.9 8 6.5 0.1 2.8 2 1 1 3 3 2 0 Apolipoprotein C-I (ApoC-1) YgaB PF14182.6 gi|325967939|ref|YP_004244131.1| - 0.051 14.0 3.5 0.14 12.6 0.6 2.5 2 1 0 2 2 2 0 YgaB-like protein Matrilin_ccoil PF10393.9 gi|325967939|ref|YP_004244131.1| - 0.055 13.3 3.1 2.1 8.3 0.1 3.2 2 1 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF4559 PF15112.6 gi|325967939|ref|YP_004244131.1| - 0.057 13.1 5.8 0.46 10.1 1.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) HxlR PF01638.17 gi|325967939|ref|YP_004244131.1| - 0.058 13.3 2.3 2.9 7.8 0.3 3.0 1 1 1 3 3 3 0 HxlR-like helix-turn-helix TetR PF13972.6 gi|325967939|ref|YP_004244131.1| - 0.059 13.1 0.1 1.1 8.9 0.0 2.1 1 1 0 2 2 2 0 Bacterial transcriptional repressor DUF2408 PF10303.9 gi|325967939|ref|YP_004244131.1| - 0.065 13.8 6.7 2.8 8.5 6.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) DUF812 PF05667.11 gi|325967939|ref|YP_004244131.1| - 0.067 12.1 6.3 0.25 10.2 6.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Occludin_ELL PF07303.13 gi|325967939|ref|YP_004244131.1| - 0.071 13.8 1.1 7.2 7.4 0.1 2.5 1 1 2 3 3 3 0 Occludin homology domain YPEB PF14620.6 gi|325967939|ref|YP_004244131.1| - 0.071 12.4 3.8 0.78 9.0 0.2 2.1 1 1 0 2 2 2 0 YpeB sporulation DUF4927 PF16279.5 gi|325967939|ref|YP_004244131.1| - 0.074 14.1 0.0 0.18 12.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4927) Vps5 PF09325.10 gi|325967939|ref|YP_004244131.1| - 0.074 12.6 5.0 0.24 10.9 1.2 2.4 1 1 1 2 2 2 0 Vps5 C terminal like Filo_VP35 PF02097.15 gi|325967939|ref|YP_004244131.1| - 0.093 11.8 4.7 0.38 9.8 0.4 2.2 1 1 0 2 2 2 0 Filoviridae VP35 Tektin PF03148.14 gi|325967939|ref|YP_004244131.1| - 0.095 11.4 4.6 1.2 7.8 0.3 2.2 2 0 0 2 2 2 0 Tektin family HSCB_C PF07743.13 gi|325967939|ref|YP_004244131.1| - 0.11 13.1 1.9 0.26 11.8 0.2 2.3 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain Med8 PF10232.9 gi|325967939|ref|YP_004244131.1| - 0.11 12.1 3.3 0.27 10.8 0.4 2.3 1 1 1 2 2 2 0 Mediator of RNA polymerase II transcription complex subunit 8 Troponin PF00992.20 gi|325967939|ref|YP_004244131.1| - 0.11 12.8 1.0 0.57 10.5 0.1 2.1 2 0 0 2 2 2 0 Troponin DUF2400 PF09674.10 gi|325967939|ref|YP_004244131.1| - 0.12 12.4 0.4 1.5 8.7 0.0 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF2400) APG17 PF04108.12 gi|325967939|ref|YP_004244131.1| - 0.12 11.4 7.0 0.61 9.1 7.0 2.0 1 1 0 1 1 1 0 Autophagy protein Apg17 CorA PF01544.18 gi|325967939|ref|YP_004244131.1| - 0.13 11.6 5.7 0.33 10.2 5.5 1.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4988 PF16378.5 gi|325967939|ref|YP_004244131.1| - 0.13 11.9 4.7 0.29 10.8 0.3 2.3 2 1 0 2 2 2 0 Domain of unknown function RmuC PF02646.16 gi|325967939|ref|YP_004244131.1| - 0.14 11.3 3.7 1.5 7.9 0.3 2.3 1 1 1 2 2 2 0 RmuC family DUF2203 PF09969.9 gi|325967939|ref|YP_004244131.1| - 0.15 12.8 3.4 9.6 6.9 0.4 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|325967939|ref|YP_004244131.1| - 0.18 11.0 1.6 0.57 9.4 0.2 1.9 1 1 1 2 2 2 0 TMPIT-like protein ABC_tran_CTD PF16326.5 gi|325967939|ref|YP_004244131.1| - 0.19 12.0 2.6 4.2 7.7 0.2 3.1 1 1 1 2 2 2 0 ABC transporter C-terminal domain Nup54 PF13874.6 gi|325967939|ref|YP_004244131.1| - 0.21 11.7 5.2 2.6 8.2 4.5 2.1 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 HMMR_N PF15905.5 gi|325967939|ref|YP_004244131.1| - 0.22 11.0 7.1 0.41 10.1 7.1 1.4 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal TBCC_N PF16752.5 gi|325967939|ref|YP_004244131.1| - 0.22 11.9 3.7 3.8 8.0 0.5 2.7 1 1 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain FlaC_arch PF05377.11 gi|325967939|ref|YP_004244131.1| - 0.24 11.8 15.6 0.31 11.5 2.6 4.1 3 2 0 3 3 3 0 Flagella accessory protein C (FlaC) Syntaxin_2 PF14523.6 gi|325967939|ref|YP_004244131.1| - 0.25 11.7 9.6 23 5.5 9.4 2.5 1 1 0 1 1 1 0 Syntaxin-like protein Noelin-1 PF12308.8 gi|325967939|ref|YP_004244131.1| - 0.27 11.3 7.2 0.9 9.6 0.6 2.4 1 1 0 2 2 2 0 Neurogenesis glycoprotein Prefoldin_2 PF01920.20 gi|325967939|ref|YP_004244131.1| - 0.27 11.2 7.1 2.4 8.2 0.4 3.0 2 1 1 3 3 3 0 Prefoldin subunit DUF948 PF06103.11 gi|325967939|ref|YP_004244131.1| - 0.28 11.5 6.0 4.7 7.5 0.4 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) UPF0184 PF03670.13 gi|325967939|ref|YP_004244131.1| - 0.31 11.5 6.3 0.18 12.2 1.2 2.8 2 2 1 3 3 2 0 Uncharacterised protein family (UPF0184) DUF4795 PF16043.5 gi|325967939|ref|YP_004244131.1| - 0.34 10.5 6.3 9.8 5.7 6.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF4349 PF14257.6 gi|325967939|ref|YP_004244131.1| - 0.38 10.2 9.9 11 5.3 0.5 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) DUF2730 PF10805.8 gi|325967939|ref|YP_004244131.1| - 0.41 10.8 5.1 0.88 9.7 0.7 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) CLZ PF16526.5 gi|325967939|ref|YP_004244131.1| - 0.45 10.9 5.3 0.95 9.9 0.3 3.1 1 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF16 PF01519.16 gi|325967939|ref|YP_004244131.1| - 0.48 10.9 6.6 11 6.6 0.4 2.8 1 1 1 2 2 2 0 Protein of unknown function DUF16 bZIP_1 PF00170.21 gi|325967939|ref|YP_004244131.1| - 0.58 10.3 3.9 4.3 7.5 0.2 3.0 2 1 1 3 3 3 0 bZIP transcription factor LRRFIP PF09738.9 gi|325967939|ref|YP_004244131.1| - 0.58 9.6 6.7 1.9 7.9 1.0 2.2 1 1 0 2 2 2 0 LRRFIP family Spc24 PF08286.11 gi|325967939|ref|YP_004244131.1| - 0.6 10.4 9.0 13 6.1 0.5 2.9 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 MetOD2 PF18548.1 gi|325967939|ref|YP_004244131.1| - 0.65 10.1 5.3 0.78 9.9 0.3 2.9 2 1 1 3 3 2 0 Metanogen output domain 2 CENP-F_leu_zip PF10473.9 gi|325967939|ref|YP_004244131.1| - 0.96 9.5 9.6 0.26 11.3 2.3 2.4 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 SKA1 PF07160.12 gi|325967939|ref|YP_004244131.1| - 0.96 9.2 6.8 3.1 7.6 0.6 2.5 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 ACCA PF03255.14 gi|325967939|ref|YP_004244131.1| - 1.1 9.1 3.2 32 4.4 0.2 2.5 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit YojJ PF10372.9 gi|325967939|ref|YP_004244131.1| - 1.1 9.4 3.8 14 5.9 0.2 3.0 2 2 1 3 3 3 0 Bacterial membrane-spanning protein N-terminus Nsp1_C PF05064.13 gi|325967939|ref|YP_004244131.1| - 1.1 9.0 5.2 0.71 9.7 0.4 2.5 1 1 0 2 2 2 0 Nsp1-like C-terminal region Vps52 PF04129.12 gi|325967939|ref|YP_004244131.1| - 1.2 7.8 7.3 0.63 8.7 3.6 1.7 1 1 1 2 2 2 0 Vps52 / Sac2 family Vps53_N PF04100.12 gi|325967939|ref|YP_004244131.1| - 1.3 7.9 6.8 9.6 5.1 6.8 1.9 1 1 0 1 1 1 0 Vps53-like, N-terminal DASH_Dad4 PF08650.10 gi|325967939|ref|YP_004244131.1| - 1.7 8.6 6.1 0.33 10.9 1.0 2.4 2 1 1 3 3 2 0 DASH complex subunit Dad4 YabA PF06156.13 gi|325967939|ref|YP_004244131.1| - 2.1 9.1 5.4 15 6.3 0.4 2.6 1 1 2 3 3 3 0 Initiation control protein YabA Csm1_N PF18504.1 gi|325967939|ref|YP_004244131.1| - 3 8.3 7.8 1.1 9.6 0.2 2.7 2 1 0 2 2 2 0 Csm1 N-terminal domain EMP24_GP25L PF01105.24 gi|325967939|ref|YP_004244131.1| - 3.6 7.5 5.7 12 5.8 0.5 2.7 2 2 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Hexapep PF00132.24 gi|325967940|ref|YP_004244132.1| - 4.5e-36 121.3 38.8 2.6e-09 36.4 5.1 5.3 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|325967940|ref|YP_004244132.1| - 5.4e-21 74.1 38.6 1.5e-11 43.8 5.1 5.3 4 1 1 5 5 5 4 Hexapeptide repeat of succinyl-transferase AAA PF00004.29 gi|325967941|ref|YP_004244133.1| - 3.2e-99 328.5 0.0 7.1e-50 168.8 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|325967941|ref|YP_004244133.1| - 5.1e-32 109.4 3.0 4.1e-16 58.5 0.1 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|325967941|ref|YP_004244133.1| - 1.9e-31 108.1 0.1 1.9e-30 104.9 0.4 2.6 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|325967941|ref|YP_004244133.1| - 1.7e-15 57.1 0.0 2.5e-07 30.6 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|325967941|ref|YP_004244133.1| - 1.8e-13 51.2 0.0 1.1e-05 25.9 0.0 3.8 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|325967941|ref|YP_004244133.1| - 2.4e-13 50.6 0.0 4.6e-07 30.1 0.0 2.6 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|325967941|ref|YP_004244133.1| - 4e-12 46.3 0.8 9.6e-05 22.4 0.1 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|325967941|ref|YP_004244133.1| - 5.1e-12 46.2 0.1 0.001 19.4 0.0 4.3 3 1 1 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|325967941|ref|YP_004244133.1| - 2.7e-11 43.8 0.0 6.8e-05 23.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|325967941|ref|YP_004244133.1| - 4.6e-11 42.9 0.0 4.9e-05 23.4 0.0 3.1 2 1 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|325967941|ref|YP_004244133.1| - 3e-10 39.9 0.6 0.00036 19.9 0.0 3.2 4 0 0 4 4 3 2 TIP49 P-loop domain Vps4_C PF09336.10 gi|325967941|ref|YP_004244133.1| - 2.1e-09 37.3 1.1 0.0022 17.9 0.0 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.17 gi|325967941|ref|YP_004244133.1| - 7.6e-09 35.5 0.0 0.004 16.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|325967941|ref|YP_004244133.1| - 8.5e-09 36.0 0.0 0.0065 17.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.17 gi|325967941|ref|YP_004244133.1| - 1.9e-08 34.0 0.0 8.9e-08 31.8 0.0 2.1 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_28 PF13521.6 gi|325967941|ref|YP_004244133.1| - 7.8e-08 32.7 1.7 0.004 17.4 0.0 3.3 4 0 0 4 4 2 2 AAA domain Mg_chelatase PF01078.21 gi|325967941|ref|YP_004244133.1| - 1.1e-06 28.2 2.6 0.027 13.8 0.1 2.8 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|325967941|ref|YP_004244133.1| - 1.3e-06 28.2 0.1 0.082 12.6 0.0 3.3 2 2 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.6 gi|325967941|ref|YP_004244133.1| - 5.9e-06 26.2 0.1 0.072 12.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|325967941|ref|YP_004244133.1| - 6.2e-06 26.6 0.0 0.24 11.8 0.0 3.0 3 0 0 3 3 2 2 RNA helicase PhoH PF02562.16 gi|325967941|ref|YP_004244133.1| - 6.5e-06 25.7 0.1 0.11 12.0 0.1 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_7 PF12775.7 gi|325967941|ref|YP_004244133.1| - 6.7e-06 25.7 0.0 0.079 12.5 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|325967941|ref|YP_004244133.1| - 1.2e-05 24.6 0.0 0.056 12.6 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|325967941|ref|YP_004244133.1| - 1.5e-05 24.4 0.3 0.32 10.3 0.0 3.4 4 0 0 4 4 4 2 Zeta toxin ATPase PF06745.13 gi|325967941|ref|YP_004244133.1| - 2.1e-05 24.0 0.5 0.33 10.2 0.1 3.3 2 1 1 3 3 3 2 KaiC ABC_tran PF00005.27 gi|325967941|ref|YP_004244133.1| - 2.3e-05 24.9 0.0 0.21 12.1 0.0 2.8 2 0 0 2 2 2 2 ABC transporter TsaE PF02367.17 gi|325967941|ref|YP_004244133.1| - 0.0001 22.3 0.0 0.74 9.8 0.0 2.8 2 1 1 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|325967941|ref|YP_004244133.1| - 0.00014 21.5 6.0 1.6 8.3 0.0 4.5 3 1 2 5 5 4 2 AAA domain Guanylate_kin PF00625.21 gi|325967941|ref|YP_004244133.1| - 0.00017 21.3 0.2 11 5.6 0.0 4.4 2 2 2 4 4 4 0 Guanylate kinase NACHT PF05729.12 gi|325967941|ref|YP_004244133.1| - 0.00021 21.3 0.2 0.6 10.0 0.0 3.2 3 0 0 3 3 3 1 NACHT domain AAA_3 PF07726.11 gi|325967941|ref|YP_004244133.1| - 0.00037 20.4 0.0 0.84 9.5 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.18 gi|325967941|ref|YP_004244133.1| - 0.00049 20.0 0.1 0.73 9.6 0.0 3.7 3 1 0 4 4 3 1 Bacterial dnaA protein AAA_30 PF13604.6 gi|325967941|ref|YP_004244133.1| - 0.00052 19.8 1.7 0.75 9.5 0.0 3.6 4 0 0 4 4 3 1 AAA domain DUF2075 PF09848.9 gi|325967941|ref|YP_004244133.1| - 0.00058 19.2 0.1 0.26 10.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|325967941|ref|YP_004244133.1| - 0.001 19.4 3.7 1.4 9.3 1.3 3.7 3 1 0 3 3 2 1 AAA domain AAA_11 PF13086.6 gi|325967941|ref|YP_004244133.1| - 0.0015 18.3 0.0 1.2 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.17 gi|325967941|ref|YP_004244133.1| - 0.002 17.3 0.0 1.9 7.5 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.6 gi|325967941|ref|YP_004244133.1| - 0.0025 17.9 0.0 0.81 9.8 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|325967941|ref|YP_004244133.1| - 0.0034 17.8 1.0 2.2 8.7 0.1 3.4 3 1 0 3 3 2 1 AAA domain NB-ARC PF00931.22 gi|325967941|ref|YP_004244133.1| - 0.0053 16.0 0.0 5.2 6.2 0.0 3.0 3 0 0 3 3 3 0 NB-ARC domain ATPase_2 PF01637.18 gi|325967941|ref|YP_004244133.1| - 0.0068 16.4 0.4 3.5 7.5 0.1 3.3 2 2 1 3 3 2 0 ATPase domain predominantly from Archaea PduV-EutP PF10662.9 gi|325967941|ref|YP_004244133.1| - 0.0095 15.7 0.0 2.6 7.8 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation ATP-synt_ab PF00006.25 gi|325967941|ref|YP_004244133.1| - 0.013 15.1 0.0 1.9 8.1 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain UFD1 PF03152.14 gi|325967941|ref|YP_004244133.1| - 0.014 14.9 0.0 0.12 11.8 0.0 2.5 2 1 1 3 3 3 0 Ubiquitin fusion degradation protein UFD1 T2SSE PF00437.20 gi|325967941|ref|YP_004244133.1| - 0.018 14.1 0.0 7.3 5.6 0.0 2.8 2 1 0 2 2 2 0 Type II/IV secretion system protein AAA_29 PF13555.6 gi|325967941|ref|YP_004244133.1| - 0.023 14.4 0.0 7.5 6.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|325967941|ref|YP_004244133.1| - 0.026 14.3 0.0 0.55 9.9 0.0 2.5 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin PF02224.18 gi|325967941|ref|YP_004244133.1| - 0.03 14.1 0.3 11 5.6 0.0 2.9 3 0 0 3 3 2 0 Cytidylate kinase ResIII PF04851.15 gi|325967941|ref|YP_004244133.1| - 0.035 14.1 0.0 14 5.7 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|325967941|ref|YP_004244133.1| - 0.043 12.7 0.0 19 4.0 0.0 3.3 4 0 0 4 4 3 0 AFG1-like ATPase HEPN_SAV_6107 PF18726.1 gi|325967941|ref|YP_004244133.1| - 0.044 14.3 1.6 0.75 10.3 0.4 2.6 2 0 0 2 2 2 0 SAV_6107-like HEPN SRPRB PF09439.10 gi|325967941|ref|YP_004244133.1| - 0.045 13.2 0.0 3.7 7.0 0.0 2.5 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit NTPase_1 PF03266.15 gi|325967941|ref|YP_004244133.1| - 0.051 13.5 4.7 9.3 6.1 0.0 4.3 4 1 1 5 5 4 0 NTPase MCM PF00493.23 gi|325967941|ref|YP_004244133.1| - 0.13 11.4 0.0 11 5.0 0.0 2.8 3 0 0 3 3 2 0 MCM P-loop domain SKI PF01202.22 gi|325967941|ref|YP_004244133.1| - 0.13 12.4 0.0 29 4.7 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase Roc PF08477.13 gi|325967941|ref|YP_004244133.1| - 0.21 11.8 0.0 15 5.8 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ACP_syn_III_C PF08541.10 gi|325967942|ref|YP_004244134.1| - 7.5e-15 54.9 0.0 2.2e-14 53.4 0.0 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|325967942|ref|YP_004244134.1| - 1.3e-08 34.6 0.0 2.9e-08 33.4 0.0 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|325967942|ref|YP_004244134.1| - 0.00012 21.9 0.2 0.0029 17.3 0.1 2.1 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|325967942|ref|YP_004244134.1| - 0.00098 19.0 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|325967942|ref|YP_004244134.1| - 0.0095 15.8 1.0 0.036 13.9 0.2 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 gi|325967942|ref|YP_004244134.1| - 0.075 12.6 0.1 0.91 9.0 0.0 2.3 1 1 1 2 2 2 0 Beta-ketoacyl synthase, N-terminal domain HTH_24 PF13412.6 gi|325967943|ref|YP_004244135.1| - 2e-08 33.7 0.3 2e-08 33.7 0.3 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|325967943|ref|YP_004244135.1| - 1.1e-06 28.6 0.0 1.6e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain FaeA PF04703.12 gi|325967943|ref|YP_004244135.1| - 8.5e-06 26.1 0.0 1.2e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.19 gi|325967943|ref|YP_004244135.1| - 3.3e-05 23.7 0.1 6.1e-05 22.8 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.11 gi|325967943|ref|YP_004244135.1| - 4.1e-05 23.5 0.4 5.8e-05 23.0 0.4 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_5 PF01022.20 gi|325967943|ref|YP_004244135.1| - 6.8e-05 22.7 0.2 6.8e-05 22.7 0.2 1.6 3 0 0 3 3 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|325967943|ref|YP_004244135.1| - 8.4e-05 22.4 0.0 0.00013 21.8 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|325967943|ref|YP_004244135.1| - 0.0013 18.5 0.0 0.0021 17.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|325967943|ref|YP_004244135.1| - 0.0016 18.9 0.1 0.0038 17.7 0.0 1.7 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|325967943|ref|YP_004244135.1| - 0.0018 18.2 0.2 0.0022 17.9 0.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.6 gi|325967943|ref|YP_004244135.1| - 0.0028 17.6 0.0 0.0042 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_micro PF17007.5 gi|325967943|ref|YP_004244135.1| - 0.0032 16.4 0.2 0.0034 16.3 0.2 1.0 1 0 0 1 1 1 1 HTH-like GntR PF00392.21 gi|325967943|ref|YP_004244135.1| - 0.0036 16.9 0.5 0.066 12.9 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|325967943|ref|YP_004244135.1| - 0.0037 17.3 0.1 0.0067 16.5 0.0 1.4 2 0 0 2 2 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|325967943|ref|YP_004244135.1| - 0.0041 17.5 0.5 0.0053 17.1 0.5 1.1 1 0 0 1 1 1 1 Penicillinase repressor TFIIE_alpha PF02002.17 gi|325967943|ref|YP_004244135.1| - 0.0053 16.6 1.6 0.013 15.4 1.6 1.7 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_41 PF14502.6 gi|325967943|ref|YP_004244135.1| - 0.0056 16.3 2.3 0.056 13.1 0.1 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|325967943|ref|YP_004244135.1| - 0.0058 16.5 0.6 0.009 15.9 0.2 1.5 2 0 0 2 2 2 1 MarR family HTH_46 PF15977.5 gi|325967943|ref|YP_004244135.1| - 0.0063 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA binding PheRS_DBD1 PF18552.1 gi|325967943|ref|YP_004244135.1| - 0.008 15.9 0.3 0.017 14.9 0.1 1.6 2 0 0 2 2 2 1 PheRS DNA binding domain 1 HTH_11 PF08279.12 gi|325967943|ref|YP_004244135.1| - 0.011 15.6 0.2 0.017 15.0 0.2 1.3 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 gi|325967943|ref|YP_004244135.1| - 0.02 14.7 0.0 0.38 10.6 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_DeoR PF08220.12 gi|325967943|ref|YP_004244135.1| - 0.022 14.5 0.1 0.04 13.7 0.1 1.5 1 1 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF4423 PF14394.6 gi|325967943|ref|YP_004244135.1| - 0.042 13.5 0.3 0.071 12.8 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) FeoB_Cyto PF17910.1 gi|325967943|ref|YP_004244135.1| - 0.048 14.2 1.1 0.061 13.9 1.1 1.3 1 0 0 1 1 1 0 FeoB cytosolic helical domain B-block_TFIIIC PF04182.12 gi|325967943|ref|YP_004244135.1| - 0.071 13.3 0.0 0.086 13.0 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|325967943|ref|YP_004244135.1| - 0.076 13.4 0.1 0.11 12.9 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator CTP-dep_RFKase PF01982.16 gi|325967944|ref|YP_004244136.1| - 4.6e-44 149.4 0.0 7.8e-44 148.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_Crp_2 PF13545.6 gi|325967944|ref|YP_004244136.1| - 0.0079 16.1 0.0 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|325967944|ref|YP_004244136.1| - 0.01 15.7 0.0 0.019 14.9 0.0 1.4 1 0 0 1 1 1 0 MarR family B-block_TFIIIC PF04182.12 gi|325967944|ref|YP_004244136.1| - 0.012 15.7 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|325967944|ref|YP_004244136.1| - 0.059 12.9 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MazE_antitoxin PF04014.18 gi|325967944|ref|YP_004244136.1| - 0.076 13.0 0.0 4.7 7.2 0.0 2.7 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin Aldolase_II PF00596.21 gi|325967945|ref|YP_004244137.1| - 1.5e-44 152.2 0.0 1.6e-44 152.0 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain Amidohydro_2 PF04909.14 gi|325967946|ref|YP_004244138.1| - 8.7e-29 101.2 0.1 1.1e-28 100.9 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase AP_endonuc_2 PF01261.24 gi|325967946|ref|YP_004244138.1| - 0.00063 19.2 0.0 0.003 17.0 0.0 1.9 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Pox_A3L PF05288.11 gi|325967946|ref|YP_004244138.1| - 0.0035 17.3 0.1 0.0069 16.3 0.1 1.4 1 0 0 1 1 1 1 Poxvirus A3L Protein Amidohydro_1 PF01979.20 gi|325967946|ref|YP_004244138.1| - 0.087 12.1 0.0 0.09 12.1 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase family TM_helix PF05552.12 gi|325967947|ref|YP_004244139.1| - 4.3e-08 33.0 21.5 3.8e-07 30.0 7.7 5.8 5 2 1 6 6 6 2 Conserved TM helix NADH-u_ox-rdase PF10785.9 gi|325967947|ref|YP_004244139.1| - 0.35 11.6 6.0 6.2 7.6 0.0 3.8 3 2 1 4 4 4 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit SNARE_assoc PF09335.11 gi|325967948|ref|YP_004244140.1| - 8.3e-05 23.1 4.8 0.00023 21.6 4.8 1.8 1 1 0 1 1 1 1 SNARE associated Golgi protein Lon_C PF05362.13 gi|325967949|ref|YP_004244141.1| - 2.7e-10 40.1 0.1 4.4e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|325967949|ref|YP_004244141.1| - 0.023 14.5 0.0 0.1 12.5 0.0 2.1 2 0 0 2 2 2 0 Subunit ChlI of Mg-chelatase OTCace PF00185.24 gi|325967950|ref|YP_004244142.1| - 5.9e-56 188.9 0.0 1.3e-54 184.5 0.0 2.1 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|325967950|ref|YP_004244142.1| - 7.3e-47 159.1 0.0 1e-46 158.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XdhC_C PF13478.6 gi|325967950|ref|YP_004244142.1| - 0.0011 19.4 0.1 0.0094 16.4 0.0 2.0 2 0 0 2 2 2 1 XdhC Rossmann domain TP6A_N PF04406.14 gi|325967951|ref|YP_004244143.1| - 1.7e-21 76.0 0.1 3e-21 75.1 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Radical_SAM PF04055.21 gi|325967952|ref|YP_004244144.1| - 1.1e-23 84.4 0.0 1.5e-23 84.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|325967952|ref|YP_004244144.1| - 9.6e-23 80.5 0.0 1.5e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|325967952|ref|YP_004244144.1| - 6.2e-06 26.3 0.0 1.2e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|325967952|ref|YP_004244144.1| - 8.4e-06 26.1 0.0 1.5e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF2950 PF11453.8 gi|325967953|ref|YP_004244145.1| - 0.18 11.0 0.3 0.34 10.1 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2950) NAD_synthase PF02540.17 gi|325967954|ref|YP_004244146.1| - 7.6e-81 270.8 0.0 8.8e-81 270.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|325967954|ref|YP_004244146.1| - 3.1e-09 36.1 0.0 3.4e-07 29.4 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|325967954|ref|YP_004244146.1| - 0.00036 20.1 0.0 0.00065 19.3 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|325967954|ref|YP_004244146.1| - 0.0028 17.4 0.0 0.0031 17.2 0.0 1.3 1 1 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|325967954|ref|YP_004244146.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CN_hydrolase PF00795.22 gi|325967955|ref|YP_004244147.1| - 3.9e-49 167.3 0.0 4.4e-49 167.2 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Iso_dh PF00180.20 gi|325967956|ref|YP_004244148.1| - 1.1e-103 347.1 0.0 1.3e-103 346.8 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TAF PF02969.17 gi|325967956|ref|YP_004244148.1| - 0.24 11.6 0.5 1.2 9.4 0.1 2.2 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TP_methylase PF00590.20 gi|325967957|ref|YP_004244149.1| - 1.4e-26 93.7 0.1 1.8e-26 93.5 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases UPRTase PF14681.6 gi|325967957|ref|YP_004244149.1| - 0.014 14.8 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase MJ1316 PF04457.12 gi|325967958|ref|YP_004244150.1| - 9.2e-15 55.2 0.3 1.1e-14 55.0 0.3 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain YcxB PF14317.6 gi|325967958|ref|YP_004244150.1| - 0.0085 15.8 0.1 0.17 11.6 0.0 2.1 1 1 1 2 2 2 2 YcxB-like protein 2-Hacid_dh_C PF02826.19 gi|325967959|ref|YP_004244151.1| - 1.8e-64 216.3 0.0 2.4e-64 215.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|325967959|ref|YP_004244151.1| - 7e-28 96.9 0.0 8.7e-28 96.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|325967959|ref|YP_004244151.1| - 6.8e-09 36.1 0.0 1.9e-08 34.7 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|325967959|ref|YP_004244151.1| - 0.00043 20.8 0.0 0.0011 19.5 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|325967959|ref|YP_004244151.1| - 0.024 15.1 0.0 0.05 14.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.12 gi|325967959|ref|YP_004244151.1| - 0.048 13.2 0.0 0.14 11.7 0.0 1.7 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_Gly3P_dh_N PF01210.23 gi|325967959|ref|YP_004244151.1| - 0.09 12.8 0.1 0.74 9.8 0.0 2.2 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|325967959|ref|YP_004244151.1| - 0.12 12.9 0.0 0.49 10.9 0.0 2.0 1 1 0 1 1 1 0 XdhC Rossmann domain Mur_ligase PF01225.25 gi|325967959|ref|YP_004244151.1| - 0.13 12.6 0.0 0.43 10.9 0.0 1.9 1 1 1 2 2 2 0 Mur ligase family, catalytic domain NUDIX PF00293.28 gi|325967960|ref|YP_004244152.1| - 1.8e-13 50.6 0.0 2.4e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.6 gi|325967960|ref|YP_004244152.1| - 0.086 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 DBC1 DUF3665 PF12427.8 gi|325967960|ref|YP_004244152.1| - 3.5 7.4 5.1 0.81 9.4 1.7 1.7 2 0 0 2 2 2 0 Branched-chain amino acid aminotransferase Cyclase PF04199.13 gi|325967961|ref|YP_004244153.1| - 2.3e-29 102.4 0.0 3.1e-29 101.9 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Glu_dehyd_C PF16912.5 gi|325967963|ref|YP_004244155.1| - 7.7e-63 211.8 0.0 9.9e-63 211.4 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|325967963|ref|YP_004244155.1| - 1e-12 47.9 0.0 1.7e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|325967963|ref|YP_004244155.1| - 1.9e-07 31.1 0.1 3.3e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|325967963|ref|YP_004244155.1| - 1.6e-05 25.0 0.0 3.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|325967963|ref|YP_004244155.1| - 0.17 12.3 0.0 0.36 11.3 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Arch_flagellin PF01917.16 gi|325967964|ref|YP_004244156.1| - 0.044 14.0 4.7 0.1 12.7 4.7 1.6 1 0 0 1 1 1 0 Archaebacterial flagellin DUF3172 PF11371.8 gi|325967964|ref|YP_004244156.1| - 0.18 11.5 1.1 1.8 8.3 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3172) NDK PF00334.19 gi|325967965|ref|YP_004244157.1| - 4.5e-42 143.3 0.0 3.5e-22 78.9 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Aminotran_3 PF00202.21 gi|325967966|ref|YP_004244158.1| - 6.6e-67 225.9 0.0 8.5e-67 225.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|325967966|ref|YP_004244158.1| - 0.00052 19.3 0.0 0.0007 18.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II GlutR_N PF05201.15 gi|325967967|ref|YP_004244159.1| - 2e-23 82.7 0.0 7.9e-23 80.8 0.0 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|325967967|ref|YP_004244159.1| - 1.8e-16 60.4 0.7 3e-16 59.7 0.1 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|325967967|ref|YP_004244159.1| - 1.9e-12 47.5 2.4 5e-12 46.1 2.4 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|325967967|ref|YP_004244159.1| - 2.5e-05 24.8 0.1 0.00021 21.8 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|325967967|ref|YP_004244159.1| - 7e-05 23.1 0.1 0.0003 21.1 0.0 2.1 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|325967967|ref|YP_004244159.1| - 0.00031 21.1 0.0 0.00068 20.0 0.0 1.8 1 1 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|325967967|ref|YP_004244159.1| - 0.001 19.3 0.3 0.0047 17.2 0.0 2.3 2 0 0 2 2 2 1 TrkA-N domain SpoIIAA-like PF11964.8 gi|325967967|ref|YP_004244159.1| - 0.0041 18.1 0.6 0.034 15.2 0.3 2.4 2 1 0 2 2 2 1 SpoIIAA-like ThiF PF00899.21 gi|325967967|ref|YP_004244159.1| - 0.018 14.4 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 ThiF family Fimbrial_PilY2 PF14481.6 gi|325967967|ref|YP_004244159.1| - 0.048 13.3 0.1 0.12 12.1 0.1 1.6 1 1 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 Pyr_redox_3 PF13738.6 gi|325967967|ref|YP_004244159.1| - 0.056 12.7 0.0 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ins_allergen_rp PF06757.13 gi|325967967|ref|YP_004244159.1| - 0.062 13.3 0.6 0.49 10.3 0.0 2.5 2 0 0 2 2 2 0 Insect allergen related repeat, nitrile-specifier detoxification 3HCDH_N PF02737.18 gi|325967967|ref|YP_004244159.1| - 0.11 12.3 0.5 5.1 7.0 0.0 2.8 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peptidase_M20 PF01546.28 gi|325967968|ref|YP_004244160.1| - 3.3e-31 108.6 0.0 4.1e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|325967968|ref|YP_004244160.1| - 9.1e-19 67.4 0.0 1.6e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|325967968|ref|YP_004244160.1| - 0.00094 18.9 0.0 0.0014 18.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 THUMP PF02926.17 gi|325967969|ref|YP_004244161.1| - 6.5e-15 55.5 0.0 1.1e-14 54.7 0.0 1.4 1 0 0 1 1 1 1 THUMP domain DUF5552 PF17706.1 gi|325967970|ref|YP_004244162.1| - 0.12 12.1 0.0 2 8.1 0.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5552) Ribosomal_L15e PF00827.17 gi|325967971|ref|YP_004244163.1| - 7.6e-63 211.7 8.0 8.5e-63 211.5 8.0 1.0 1 0 0 1 1 1 1 Ribosomal L15 Rpn9_C PF18261.1 gi|325967971|ref|YP_004244163.1| - 0.021 14.4 0.1 0.04 13.5 0.1 1.4 1 0 0 1 1 1 0 Rpn9 C-terminal helix RNA_binding PF01877.17 gi|325967972|ref|YP_004244164.1| - 5.3e-27 94.5 0.1 6.1e-27 94.3 0.1 1.0 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.16 gi|325967973|ref|YP_004244165.1| - 4.1e-13 49.3 0.2 2.5e-12 46.8 0.4 1.8 2 0 0 2 2 2 1 RNase P subunit p30 Peptidase_C47 PF05543.13 gi|325967973|ref|YP_004244165.1| - 0.024 14.2 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Staphopain peptidase C47 RNase_P_Rpp14 PF01900.19 gi|325967974|ref|YP_004244166.1| - 0.0047 17.2 0.1 0.0055 16.9 0.1 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Flavin_Reduct PF01613.18 gi|325967975|ref|YP_004244167.1| - 2.9e-41 141.1 0.0 3.3e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain ABC_tran PF00005.27 gi|325967976|ref|YP_004244168.1| - 3.6e-31 108.5 0.0 4.8e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|325967976|ref|YP_004244168.1| - 6e-20 71.5 0.5 1e-19 70.8 0.5 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|325967976|ref|YP_004244168.1| - 0.00084 19.6 0.5 0.0031 17.8 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325967976|ref|YP_004244168.1| - 0.0064 16.9 0.0 0.012 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|325967976|ref|YP_004244168.1| - 0.0066 16.2 0.1 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|325967976|ref|YP_004244168.1| - 0.0086 15.5 0.1 0.18 11.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|325967976|ref|YP_004244168.1| - 0.018 14.9 0.2 0.49 10.2 0.0 2.2 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 gi|325967976|ref|YP_004244168.1| - 0.027 14.4 0.1 0.059 13.3 0.1 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|325967976|ref|YP_004244168.1| - 0.029 14.2 0.1 0.051 13.5 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.21 gi|325967976|ref|YP_004244168.1| - 0.032 13.6 0.0 0.054 12.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|325967976|ref|YP_004244168.1| - 0.035 13.8 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.6 gi|325967976|ref|YP_004244168.1| - 0.083 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 gi|325967976|ref|YP_004244168.1| - 0.084 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Septin DUF3987 PF13148.6 gi|325967976|ref|YP_004244168.1| - 0.095 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_33 PF13671.6 gi|325967976|ref|YP_004244168.1| - 0.095 12.9 0.0 0.13 12.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|325967976|ref|YP_004244168.1| - 0.12 12.9 0.0 0.21 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Fe_bilin_red PF05996.12 gi|325967976|ref|YP_004244168.1| - 0.16 11.6 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Ferredoxin-dependent bilin reductase APS_kinase PF01583.20 gi|325967976|ref|YP_004244168.1| - 0.17 11.8 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.6 gi|325967976|ref|YP_004244168.1| - 0.18 12.3 0.0 0.32 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|325967976|ref|YP_004244168.1| - 0.19 11.8 0.5 0.38 10.8 0.4 1.4 1 1 0 1 1 1 0 Helicase HerA, central domain NB-ARC PF00931.22 gi|325967976|ref|YP_004244168.1| - 0.21 10.8 0.0 0.34 10.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_13 PF13166.6 gi|325967976|ref|YP_004244168.1| - 0.29 9.7 0.3 12 4.4 0.3 2.0 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|325967976|ref|YP_004244168.1| - 0.31 10.5 1.1 0.34 10.3 0.1 1.5 2 0 0 2 2 2 0 Poxvirus A32 protein ABC_tran PF00005.27 gi|325967977|ref|YP_004244169.1| - 4.2e-31 108.3 0.0 5.9e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|325967977|ref|YP_004244169.1| - 3.8e-19 69.0 0.0 6.8e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|325967977|ref|YP_004244169.1| - 1.6e-08 34.7 0.1 2.8e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325967977|ref|YP_004244169.1| - 8.3e-05 22.1 0.1 0.036 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|325967977|ref|YP_004244169.1| - 9.7e-05 22.7 0.0 0.008 16.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|325967977|ref|YP_004244169.1| - 0.00039 20.8 0.0 0.00062 20.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|325967977|ref|YP_004244169.1| - 0.00042 20.3 0.0 0.00077 19.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|325967977|ref|YP_004244169.1| - 0.00059 19.5 0.1 0.0014 18.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TniB PF05621.11 gi|325967977|ref|YP_004244169.1| - 0.0013 18.2 0.1 0.17 11.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein NACHT PF05729.12 gi|325967977|ref|YP_004244169.1| - 0.0017 18.3 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|325967977|ref|YP_004244169.1| - 0.0024 17.8 0.0 0.028 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|325967977|ref|YP_004244169.1| - 0.0025 17.4 0.1 0.0065 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|325967977|ref|YP_004244169.1| - 0.0028 17.4 0.1 0.45 10.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF87 PF01935.17 gi|325967977|ref|YP_004244169.1| - 0.0033 17.6 0.1 0.0076 16.4 0.0 1.6 2 0 0 2 2 1 1 Helicase HerA, central domain AAA_30 PF13604.6 gi|325967977|ref|YP_004244169.1| - 0.0041 16.9 0.0 0.067 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|325967977|ref|YP_004244169.1| - 0.017 15.5 0.0 0.055 13.9 0.0 1.9 1 0 0 1 1 1 0 RNA helicase APS_kinase PF01583.20 gi|325967977|ref|YP_004244169.1| - 0.018 14.9 0.0 0.12 12.2 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_13 PF13166.6 gi|325967977|ref|YP_004244169.1| - 0.019 13.6 0.0 0.65 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|325967977|ref|YP_004244169.1| - 0.028 15.0 0.0 0.23 12.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|325967977|ref|YP_004244169.1| - 0.043 13.6 0.0 0.069 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|325967977|ref|YP_004244169.1| - 0.053 13.2 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_15 PF13175.6 gi|325967977|ref|YP_004244169.1| - 0.058 13.1 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|325967977|ref|YP_004244169.1| - 0.064 13.4 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|325967977|ref|YP_004244169.1| - 0.075 13.5 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|325967977|ref|YP_004244169.1| - 0.076 12.2 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ATP-synt_ab PF00006.25 gi|325967977|ref|YP_004244169.1| - 0.088 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|325967977|ref|YP_004244169.1| - 0.099 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma54_activ_2 PF14532.6 gi|325967977|ref|YP_004244169.1| - 0.14 12.2 0.0 0.52 10.4 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_10 PF12846.7 gi|325967977|ref|YP_004244169.1| - 0.15 10.9 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.29 gi|325967977|ref|YP_004244169.1| - 0.16 12.4 0.0 1 9.8 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|325967977|ref|YP_004244169.1| - 0.2 11.4 0.0 0.28 10.9 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family BPD_transp_1 PF00528.22 gi|325967978|ref|YP_004244170.1| - 1.3e-22 80.4 22.4 1.3e-22 80.4 22.4 2.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|325967979|ref|YP_004244171.1| - 1.9e-28 99.5 16.6 1.9e-28 99.5 16.6 2.5 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|325967980|ref|YP_004244172.1| - 2.2e-12 46.7 8.6 6.3e-08 32.0 0.4 3.3 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle FtsX PF02687.21 gi|325967980|ref|YP_004244172.1| - 0.11 13.0 3.4 2.3 8.8 0.2 3.8 3 0 0 3 3 3 0 FtsX-like permease family PRIMA1 PF16101.5 gi|325967980|ref|YP_004244172.1| - 0.21 11.6 10.0 0.47 10.5 10.0 1.5 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 Mito_fiss_reg PF05308.11 gi|325967980|ref|YP_004244172.1| - 1.5 8.9 5.2 2.4 8.2 5.2 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator Tad PF13400.6 gi|325967980|ref|YP_004244172.1| - 9.2 6.7 13.6 2.2 8.7 2.2 2.4 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Herpes_U15 PF05613.11 gi|325967981|ref|YP_004244173.1| - 0.97 10.2 5.6 0.44 11.3 0.4 2.2 2 0 0 2 2 2 0 Human herpesvirus U15 protein Ribosomal_L39 PF00832.20 gi|325967982|ref|YP_004244174.1| - 2.5e-18 65.4 9.2 3.4e-18 65.0 9.2 1.2 1 0 0 1 1 1 1 Ribosomal L39 protein dsDNA_bind PF01984.20 gi|325967983|ref|YP_004244175.1| - 1.7e-23 83.0 11.1 2.3e-23 82.6 11.1 1.3 1 0 0 1 1 1 1 Double-stranded DNA-binding domain DUF4142 PF13628.6 gi|325967983|ref|YP_004244175.1| - 0.0046 17.2 2.9 1.3 9.3 2.1 2.2 2 1 0 2 2 2 2 Domain of unknown function (DUF4142) RE_XamI PF09572.10 gi|325967983|ref|YP_004244175.1| - 0.026 14.2 1.7 0.04 13.6 1.4 1.5 1 1 1 2 2 2 0 XamI restriction endonuclease IL1_propep PF02394.16 gi|325967983|ref|YP_004244175.1| - 0.14 13.1 1.7 0.34 11.8 1.7 1.6 1 1 0 1 1 1 0 Interleukin-1 propeptide Ribosomal_S19e PF01090.19 gi|325967984|ref|YP_004244176.1| - 4.5e-49 165.7 0.0 5.3e-49 165.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|325967984|ref|YP_004244176.1| - 0.00013 21.7 0.0 0.0098 15.7 0.0 2.4 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|325967984|ref|YP_004244176.1| - 0.0072 16.3 0.1 0.016 15.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1028 PF06267.12 gi|325967985|ref|YP_004244177.1| - 2.3e-67 226.5 0.4 3.2e-67 226.1 0.4 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PG_binding_2 PF08823.11 gi|325967985|ref|YP_004244177.1| - 3.5e-24 84.9 0.1 7.8e-24 83.8 0.1 1.6 1 0 0 1 1 1 1 Putative peptidoglycan binding domain PG_binding_1 PF01471.18 gi|325967985|ref|YP_004244177.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 Putative peptidoglycan binding domain TFIIS_C PF01096.18 gi|325967986|ref|YP_004244178.1| - 1.1e-20 73.2 9.8 2.5e-19 68.8 4.9 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|325967986|ref|YP_004244178.1| - 4.7e-08 32.9 4.3 6.3e-05 22.9 2.3 2.2 2 0 0 2 2 2 2 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|325967986|ref|YP_004244178.1| - 1.1e-06 28.6 6.8 0.13 12.4 0.3 3.3 3 0 0 3 3 3 3 Uncharacterised protein family UPF0547 RNA_POL_M_15KD PF02150.16 gi|325967986|ref|YP_004244178.1| - 1.2e-05 25.1 6.0 0.048 13.5 0.1 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|325967986|ref|YP_004244178.1| - 3e-05 23.8 2.4 0.016 15.1 0.8 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|325967986|ref|YP_004244178.1| - 0.00025 21.3 3.5 0.027 14.9 1.6 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|325967986|ref|YP_004244178.1| - 0.00028 20.9 3.5 3.7 7.7 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|325967986|ref|YP_004244178.1| - 0.00038 20.3 1.8 0.66 10.0 0.0 2.6 2 1 0 2 2 2 2 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|325967986|ref|YP_004244178.1| - 0.00084 18.8 3.1 0.11 12.1 0.5 2.8 2 1 0 2 2 2 1 TFIIB zinc-binding Mu-like_Com PF10122.9 gi|325967986|ref|YP_004244178.1| - 0.0012 18.3 2.1 5.5 6.5 0.1 3.1 3 0 0 3 3 3 0 Mu-like prophage protein Com Ribosomal_L37e PF01907.19 gi|325967986|ref|YP_004244178.1| - 0.0017 18.5 4.2 0.59 10.3 0.0 3.2 3 0 0 3 3 3 1 Ribosomal protein L37e T4_baseplate PF12322.8 gi|325967986|ref|YP_004244178.1| - 0.0036 16.8 1.5 1.4 8.4 0.1 2.1 1 1 1 2 2 2 2 T4 bacteriophage base plate protein zinc_ribbon_4 PF13717.6 gi|325967986|ref|YP_004244178.1| - 0.0037 17.1 6.5 1.6 8.8 0.2 3.3 3 0 0 3 3 3 1 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|325967986|ref|YP_004244178.1| - 0.0069 16.1 3.3 2.3 8.0 0.1 3.1 3 0 0 3 3 3 1 Predicted integral membrane zinc-ribbon metal-binding protein Zn_Tnp_IS91 PF14319.6 gi|325967986|ref|YP_004244178.1| - 0.0089 16.0 3.8 2.5 8.2 0.0 2.8 2 1 1 3 3 3 2 Transposase zinc-binding domain HalOD2 PF18547.1 gi|325967986|ref|YP_004244178.1| - 0.0091 15.9 5.3 0.22 11.4 0.1 3.0 3 0 0 3 3 3 1 Halobacterial output domain 2 DUF2387 PF09526.10 gi|325967986|ref|YP_004244178.1| - 0.0098 16.0 3.5 1.3 9.2 0.0 2.3 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.6 gi|325967986|ref|YP_004244178.1| - 0.01 15.5 14.4 0.17 11.7 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DUF4379 PF14311.6 gi|325967986|ref|YP_004244178.1| - 0.013 15.9 0.5 0.013 15.9 0.5 3.2 1 1 2 3 3 3 0 Probable Zinc-ribbon domain zf-tcix PF14952.6 gi|325967986|ref|YP_004244178.1| - 0.015 14.9 9.2 1.1 8.9 0.3 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Zn_ribbon_SprT PF17283.2 gi|325967986|ref|YP_004244178.1| - 0.016 15.1 6.6 1.3 9.0 0.1 2.5 2 1 0 2 2 2 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|325967986|ref|YP_004244178.1| - 0.021 14.9 6.2 0.86 9.7 6.2 2.5 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|325967986|ref|YP_004244178.1| - 0.023 14.7 2.9 0.24 11.4 3.0 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin PF00301.20 gi|325967986|ref|YP_004244178.1| - 0.027 14.5 11.5 2 8.5 0.6 3.2 3 0 0 3 3 3 0 Rubredoxin Baculo_LEF5_C PF11792.8 gi|325967986|ref|YP_004244178.1| - 0.034 13.8 2.1 1.4 8.7 0.0 3.0 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zinc_ribbon_13 PF09855.9 gi|325967986|ref|YP_004244178.1| - 0.05 13.8 7.0 3.2 8.0 0.1 3.1 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) YhfH PF14149.6 gi|325967986|ref|YP_004244178.1| - 0.053 13.5 6.7 1.7 8.7 0.5 3.2 3 0 0 3 3 3 0 YhfH-like protein zn-ribbon_14 PF16503.5 gi|325967986|ref|YP_004244178.1| - 0.079 12.5 10.1 2.4 7.8 0.5 3.3 3 0 0 3 3 3 0 Zinc-ribbon Elf1 PF05129.13 gi|325967986|ref|YP_004244178.1| - 0.081 13.0 5.2 1.3 9.1 0.1 2.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-ACC PF17848.1 gi|325967986|ref|YP_004244178.1| - 0.089 12.9 8.6 6.6 6.9 0.7 3.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-ISL3 PF14690.6 gi|325967986|ref|YP_004244178.1| - 0.095 13.4 3.7 6.4 7.5 0.0 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ADK_lid PF05191.14 gi|325967986|ref|YP_004244178.1| - 0.098 12.7 4.7 2.6 8.1 0.2 3.2 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf-H2C2_2 PF13465.6 gi|325967986|ref|YP_004244178.1| - 0.12 12.9 9.5 4.6 7.8 0.3 3.2 3 0 0 3 3 3 0 Zinc-finger double domain GFA PF04828.14 gi|325967986|ref|YP_004244178.1| - 0.15 12.4 2.2 0.65 10.4 0.2 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.10 gi|325967986|ref|YP_004244178.1| - 0.19 11.5 7.2 4.1 7.2 0.2 3.1 3 0 0 3 3 3 0 A2L zinc ribbon domain Terminase_GpA PF05876.12 gi|325967986|ref|YP_004244178.1| - 0.2 10.2 5.0 0.5 8.9 1.3 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) Rubredoxin_2 PF18073.1 gi|325967986|ref|YP_004244178.1| - 0.21 11.3 14.5 1.1 9.1 1.1 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain zf-Mss51 PF13824.6 gi|325967986|ref|YP_004244178.1| - 0.22 11.7 9.9 7.9 6.7 0.3 3.1 1 1 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 FdhE PF04216.12 gi|325967986|ref|YP_004244178.1| - 0.23 11.3 4.6 0.071 13.0 0.8 1.7 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-ribbon_3 PF13248.6 gi|325967986|ref|YP_004244178.1| - 0.23 10.9 13.7 1.1 8.8 0.6 3.2 3 0 0 3 3 3 0 zinc-ribbon domain CpXC PF14353.6 gi|325967986|ref|YP_004244178.1| - 0.24 11.5 7.3 1.3 9.1 0.1 2.9 1 1 0 2 2 2 0 CpXC protein IBR PF01485.21 gi|325967986|ref|YP_004244178.1| - 0.26 11.5 5.3 32 4.9 0.1 2.7 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain DUF2072 PF09845.9 gi|325967986|ref|YP_004244178.1| - 0.42 10.9 5.6 1.2 9.4 0.1 2.7 1 1 2 3 3 3 0 Zn-ribbon containing protein zf_C2H2_10 PF18414.1 gi|325967986|ref|YP_004244178.1| - 0.52 9.9 13.0 1.6 8.3 0.6 3.0 3 0 0 3 3 3 0 C2H2 type zinc-finger DUF1610 PF07754.11 gi|325967986|ref|YP_004244178.1| - 0.64 10.0 7.8 2.7 8.1 0.1 2.6 3 0 0 3 3 2 0 Domain of unknown function (DUF1610) zf-HIT PF04438.16 gi|325967986|ref|YP_004244178.1| - 0.66 9.9 10.5 13 5.7 0.2 3.1 3 0 0 3 3 3 0 HIT zinc finger Ogr_Delta PF04606.12 gi|325967986|ref|YP_004244178.1| - 1 9.4 5.8 19 5.3 0.0 2.5 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2_3 PF13878.6 gi|325967986|ref|YP_004244178.1| - 1.1 9.2 5.2 31 4.5 0.2 3.1 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO zf-NADH-PPase PF09297.11 gi|325967986|ref|YP_004244178.1| - 1.2 8.9 8.1 14 5.4 0.1 3.2 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Gmx_para_CXXCG PF09535.10 gi|325967986|ref|YP_004244178.1| - 1.3 8.2 3.9 7.3 5.8 0.0 2.6 2 1 1 3 3 3 0 Protein of unknown function (Gmx_para_CXXCG) zf-RanBP PF00641.18 gi|325967986|ref|YP_004244178.1| - 1.6 8.2 11.1 0.5 9.7 0.6 3.0 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others Nudix_N_2 PF14803.6 gi|325967986|ref|YP_004244178.1| - 1.7 8.6 7.9 33 4.5 3.6 3.1 2 1 0 2 2 2 0 Nudix N-terminal zf_UBZ PF18439.1 gi|325967986|ref|YP_004244178.1| - 1.9 8.2 9.0 20 4.8 0.3 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Desulfoferrod_N PF06397.12 gi|325967986|ref|YP_004244178.1| - 1.9 8.2 7.2 6 6.6 0.2 2.6 3 0 0 3 3 2 0 Desulfoferrodoxin, N-terminal domain zf-TFIIB PF13453.6 gi|325967986|ref|YP_004244178.1| - 2.3 7.6 9.2 4.2 6.8 0.0 3.0 2 1 0 2 2 2 0 Transcription factor zinc-finger zf-C4_Topoisom PF01396.19 gi|325967986|ref|YP_004244178.1| - 2.8 7.8 10.9 4.7 7.1 0.4 2.9 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF983 PF06170.12 gi|325967986|ref|YP_004244178.1| - 4.1 7.9 5.5 9.1 6.8 0.3 3.2 3 1 1 4 4 3 0 Protein of unknown function (DUF983) PCNA_N PF00705.18 gi|325967987|ref|YP_004244179.1| - 1.7e-13 50.3 0.1 1.8e-11 43.8 0.0 2.2 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|325967987|ref|YP_004244179.1| - 4.4e-10 39.8 0.5 1.1e-08 35.3 0.2 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|325967987|ref|YP_004244179.1| - 0.00044 19.8 0.0 0.00052 19.5 0.0 1.3 1 0 0 1 1 1 1 Rad9 Amidase PF01425.21 gi|325967987|ref|YP_004244179.1| - 0.13 11.1 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Amidase DNA_primase_S PF01896.19 gi|325967988|ref|YP_004244180.1| - 2.9e-24 86.1 0.0 4.6e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 DNA primase small subunit DUF4826 PF16108.5 gi|325967989|ref|YP_004244181.1| - 0.19 12.0 0.0 0.31 11.3 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4826) Ribosomal_L44 PF00935.19 gi|325967990|ref|YP_004244182.1| - 6.5e-27 93.8 4.6 9.5e-27 93.3 4.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 RNA_POL_M_15KD PF02150.16 gi|325967990|ref|YP_004244182.1| - 0.0081 16.0 1.6 0.06 13.2 0.1 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Ribosomal_S27e PF01667.17 gi|325967990|ref|YP_004244182.1| - 0.012 15.3 0.4 0.64 9.8 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 Rubredoxin_2 PF18073.1 gi|325967990|ref|YP_004244182.1| - 0.018 14.7 1.5 0.63 9.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-IS66 PF13005.7 gi|325967990|ref|YP_004244182.1| - 0.023 15.1 0.3 0.86 10.0 0.1 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|325967990|ref|YP_004244182.1| - 0.094 12.6 3.0 3.3 7.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|325967990|ref|YP_004244182.1| - 0.17 11.3 1.4 4.4 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RecR PF02132.15 gi|325967990|ref|YP_004244182.1| - 0.37 10.4 2.8 0.75 9.4 0.2 2.2 2 0 0 2 2 2 0 RecR protein zf-Mss51 PF13824.6 gi|325967990|ref|YP_004244182.1| - 0.49 10.5 2.2 12 6.1 2.7 2.2 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ribosomal_L33 PF00471.20 gi|325967990|ref|YP_004244182.1| - 0.71 10.4 6.5 2.1 8.9 0.2 2.8 2 1 0 2 2 2 0 Ribosomal protein L33 Ribosomal_S27e PF01667.17 gi|325967991|ref|YP_004244183.1| - 3.5e-21 74.6 0.6 4.3e-21 74.4 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|325967991|ref|YP_004244183.1| - 8.2e-05 22.0 0.7 0.0001 21.7 0.7 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|325967991|ref|YP_004244183.1| - 0.0022 17.3 0.5 0.3 10.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|325967991|ref|YP_004244183.1| - 0.0046 16.6 3.3 1.1 8.9 0.2 2.3 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain RNA_POL_M_15KD PF02150.16 gi|325967991|ref|YP_004244183.1| - 0.017 15.0 0.7 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HypA PF01155.19 gi|325967991|ref|YP_004244183.1| - 0.025 14.6 0.1 0.03 14.3 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_10 PF16685.5 gi|325967991|ref|YP_004244183.1| - 0.051 13.7 0.2 0.29 11.3 0.0 1.9 2 0 0 2 2 2 0 zinc RING finger of MSL2 Zn-ribbon_8 PF09723.10 gi|325967991|ref|YP_004244183.1| - 0.062 13.4 0.2 0.1 12.7 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|325967991|ref|YP_004244183.1| - 0.067 13.1 0.3 2 8.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TackOD1 PF18551.1 gi|325967991|ref|YP_004244183.1| - 0.098 12.3 0.2 0.12 12.0 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_4 PF13717.6 gi|325967991|ref|YP_004244183.1| - 0.12 12.3 4.6 2.7 8.0 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|325967991|ref|YP_004244183.1| - 0.42 10.3 5.1 4.3 7.1 1.0 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF3797 PF12677.7 gi|325967991|ref|YP_004244183.1| - 1.8 8.5 5.9 8.9 6.3 1.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) EIF_2_alpha PF07541.12 gi|325967992|ref|YP_004244184.1| - 1.1e-22 80.3 0.0 2.4e-22 79.2 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|325967992|ref|YP_004244184.1| - 3.7e-08 33.6 1.1 3.9e-07 30.3 0.0 2.6 3 0 0 3 3 3 1 S1 RNA binding domain Nop10p PF04135.12 gi|325967993|ref|YP_004244185.1| - 8.2e-22 77.0 2.0 1e-21 76.7 2.0 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|325967993|ref|YP_004244185.1| - 0.00011 22.0 1.5 0.0002 21.2 1.5 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 gi|325967993|ref|YP_004244185.1| - 0.018 15.3 0.9 0.03 14.6 0.9 1.4 1 0 0 1 1 1 0 Ribosomal L32p protein family RecR PF02132.15 gi|325967993|ref|YP_004244185.1| - 0.034 13.7 1.0 0.048 13.2 1.0 1.2 1 0 0 1 1 1 0 RecR protein HypA PF01155.19 gi|325967993|ref|YP_004244185.1| - 0.038 14.0 0.5 0.056 13.5 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1272 PF06906.11 gi|325967993|ref|YP_004244185.1| - 0.042 13.9 1.5 0.059 13.5 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DUF1258 PF06869.12 gi|325967993|ref|YP_004244185.1| - 0.043 13.3 0.2 0.058 12.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) NRDD PF13597.6 gi|325967993|ref|YP_004244185.1| - 0.066 12.0 1.1 0.08 11.7 1.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase PolC_DP2 PF03833.13 gi|325967993|ref|YP_004244185.1| - 0.098 10.5 0.0 0.098 10.5 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ribbon_3 PF13248.6 gi|325967993|ref|YP_004244185.1| - 0.11 12.0 6.2 0.51 9.8 6.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|325967993|ref|YP_004244185.1| - 0.24 10.9 3.3 4.1 7.0 0.5 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|325967993|ref|YP_004244185.1| - 0.69 9.7 6.4 3 7.7 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain STT3 PF02516.14 gi|325967994|ref|YP_004244186.1| - 4.7e-17 62.1 49.3 9.6e-17 61.1 49.3 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Aldose_epim PF01263.20 gi|325967995|ref|YP_004244187.1| - 4e-37 128.1 0.0 5.2e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Aldose 1-epimerase PaREP1 PF05942.11 gi|325967996|ref|YP_004244188.1| - 8.3e-08 32.2 0.6 1.3e-07 31.5 0.6 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|325967996|ref|YP_004244188.1| - 0.00051 20.2 0.2 0.0019 18.4 0.2 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF5618) HEPN PF05168.14 gi|325967996|ref|YP_004244188.1| - 0.0023 18.1 0.4 0.0031 17.6 0.4 1.2 1 0 0 1 1 1 1 HEPN domain rOmpB PF12334.8 gi|325967997|ref|YP_004244189.1| - 0.013 14.9 0.8 0.016 14.7 0.8 1.0 1 0 0 1 1 1 0 Rickettsia outer membrane protein B DUF2626 PF11117.8 gi|325967997|ref|YP_004244189.1| - 4 8.2 6.9 1 10.1 2.3 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF2626) TauE PF01925.19 gi|325967998|ref|YP_004244190.1| - 7.5e-34 117.4 35.4 9.9e-34 117.0 35.4 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1634 PF07843.11 gi|325968000|ref|YP_004244192.1| - 0.0027 17.7 10.8 0.0038 17.3 10.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) TctB PF07331.11 gi|325968000|ref|YP_004244192.1| - 0.031 14.6 8.3 0.044 14.0 8.3 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF1435 PF07256.12 gi|325968000|ref|YP_004244192.1| - 1 9.5 8.7 0.44 10.7 5.7 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1435) LGT PF01790.18 gi|325968000|ref|YP_004244192.1| - 1.2 8.3 14.3 9.2 5.4 14.3 1.9 1 1 0 1 1 1 0 Prolipoprotein diacylglyceryl transferase TauE PF01925.19 gi|325968001|ref|YP_004244193.1| - 8.4e-39 133.6 36.2 1.1e-38 133.2 36.2 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE TauE PF01925.19 gi|325968002|ref|YP_004244194.1| - 2.4e-41 141.9 28.0 2.4e-41 141.9 28.0 1.7 2 0 0 2 2 2 1 Sulfite exporter TauE/SafE TauE PF01925.19 gi|325968003|ref|YP_004244195.1| - 4.4e-41 141.1 33.3 4.4e-41 141.1 33.3 2.4 2 1 0 2 2 2 1 Sulfite exporter TauE/SafE DUF1634 PF07843.11 gi|325968003|ref|YP_004244195.1| - 6.7e-23 80.7 14.5 6.7e-23 80.7 14.5 3.7 4 1 1 5 5 5 1 Protein of unknown function (DUF1634) E1-E2_ATPase PF00122.20 gi|325968004|ref|YP_004244196.1| - 3e-51 173.5 2.9 3e-51 173.5 2.9 3.6 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|325968004|ref|YP_004244196.1| - 5.2e-22 79.2 0.1 9.9e-22 78.3 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|325968004|ref|YP_004244196.1| - 5.1e-08 33.0 0.0 8.1e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|325968004|ref|YP_004244196.1| - 0.007 16.8 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF1848 PF08902.11 gi|325968005|ref|YP_004244197.1| - 0.037 13.8 0.1 0.052 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) TrmB PF01978.19 gi|325968007|ref|YP_004244199.1| - 0.0039 17.1 0.3 1.4 8.8 0.1 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB ORC_WH_C PF18137.1 gi|325968007|ref|YP_004244199.1| - 0.087 12.9 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Origin recognition complex winged helix C-terminal PI-PLC-X PF00388.19 gi|325968007|ref|YP_004244199.1| - 0.1 12.2 0.0 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Phosphatidylinositol-specific phospholipase C, X domain GATase_3 PF07685.14 gi|325968008|ref|YP_004244200.1| - 1.5e-28 99.7 0.1 2.6e-28 99.0 0.1 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|325968008|ref|YP_004244200.1| - 4.1e-14 52.7 0.5 7.2e-14 52.0 0.1 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|325968008|ref|YP_004244200.1| - 1.7e-12 47.6 2.5 3.4e-09 36.8 2.5 2.4 1 1 0 1 1 1 1 AAA domain VirC1 PF07015.11 gi|325968008|ref|YP_004244200.1| - 0.0063 15.8 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_31 PF13614.6 gi|325968008|ref|YP_004244200.1| - 0.0068 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain IncF PF17626.2 gi|325968008|ref|YP_004244200.1| - 0.011 16.0 0.1 0.018 15.4 0.1 1.4 1 0 0 1 1 1 0 Inclusion membrane protein F ParA PF10609.9 gi|325968008|ref|YP_004244200.1| - 0.06 12.8 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase TP_methylase PF00590.20 gi|325968009|ref|YP_004244201.1| - 2.6e-37 128.8 0.0 3.3e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TrmB PF01978.19 gi|325968010|ref|YP_004244202.1| - 0.032 14.1 0.1 0.062 13.2 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SMC_ScpB PF04079.16 gi|325968010|ref|YP_004244202.1| - 0.064 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB PUB PF09409.10 gi|325968011|ref|YP_004244203.1| - 0.14 12.1 0.2 0.43 10.6 0.2 1.7 2 0 0 2 2 2 0 PUB domain DUF1652 PF07865.11 gi|325968011|ref|YP_004244203.1| - 0.19 11.6 1.3 0.25 11.2 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1652) DUF4953 PF16313.5 gi|325968012|ref|YP_004244204.1| - 0.036 13.3 0.0 0.043 13.0 0.0 1.1 1 0 0 1 1 1 0 Met-zincin NitrOD2 PF18550.1 gi|325968012|ref|YP_004244204.1| - 0.14 12.3 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Nitrososphaera output domain 2 ATP-sulfurylase PF01747.17 gi|325968013|ref|YP_004244205.1| - 2.7e-73 245.9 0.0 3.8e-73 245.5 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|325968013|ref|YP_004244205.1| - 9.4e-40 135.9 0.0 1.4e-39 135.3 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain DUF309 PF03745.14 gi|325968013|ref|YP_004244205.1| - 0.019 14.6 0.1 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF309) KH_10 PF17905.1 gi|325968013|ref|YP_004244205.1| - 0.051 14.0 0.0 0.09 13.2 0.0 1.4 1 0 0 1 1 1 0 GLD-3 KH domain 5 FAD_binding_2 PF00890.24 gi|325968014|ref|YP_004244206.1| - 1.4e-14 54.1 0.2 2.5e-13 49.9 0.0 2.5 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|325968014|ref|YP_004244206.1| - 3.9e-07 30.1 0.0 8.6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|325968014|ref|YP_004244206.1| - 0.00021 21.0 1.3 0.0012 18.5 1.3 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|325968014|ref|YP_004244206.1| - 0.0081 16.4 1.5 0.05 13.8 0.3 2.8 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|325968014|ref|YP_004244206.1| - 0.018 14.1 0.7 0.14 11.2 0.4 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|325968014|ref|YP_004244206.1| - 0.042 13.1 0.4 0.094 11.9 0.1 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|325968014|ref|YP_004244206.1| - 0.18 11.1 0.1 0.3 10.4 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain APS-reductase_C PF12139.8 gi|325968015|ref|YP_004244207.1| - 4.3e-24 84.5 0.0 5.7e-24 84.1 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4_7 PF12838.7 gi|325968015|ref|YP_004244207.1| - 4.7e-12 46.3 10.9 8.6e-12 45.5 10.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968015|ref|YP_004244207.1| - 1.4e-11 43.7 13.1 2.1e-06 27.3 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325968015|ref|YP_004244207.1| - 6e-11 42.3 10.0 1.1e-10 41.5 10.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968015|ref|YP_004244207.1| - 1.9e-10 40.7 21.6 5.2e-08 32.9 12.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325968015|ref|YP_004244207.1| - 8.1e-09 35.2 13.6 4.3e-06 26.6 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|325968015|ref|YP_004244207.1| - 8.6e-08 33.0 3.8 0.0017 19.2 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|325968015|ref|YP_004244207.1| - 2.9e-07 30.9 4.5 0.0059 17.0 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325968015|ref|YP_004244207.1| - 4.2e-06 26.8 7.5 0.005 17.0 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968015|ref|YP_004244207.1| - 8.5e-06 25.6 14.8 0.00015 21.7 4.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|325968015|ref|YP_004244207.1| - 2.9e-05 24.7 18.4 0.0044 17.9 5.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325968015|ref|YP_004244207.1| - 3.2e-05 24.1 14.4 0.0015 18.8 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|325968015|ref|YP_004244207.1| - 0.00012 22.6 13.8 0.0045 17.5 13.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|325968015|ref|YP_004244207.1| - 0.00063 19.9 9.9 0.1 12.8 3.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|325968015|ref|YP_004244207.1| - 0.042 14.7 7.3 0.11 13.4 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|325968015|ref|YP_004244207.1| - 0.086 13.6 4.5 0.52 11.1 0.6 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain SPEG_u2 PF16650.5 gi|325968015|ref|YP_004244207.1| - 0.09 13.0 0.4 0.88 9.8 0.5 2.1 2 0 0 2 2 2 0 Unstructured region on SPEG complex protein Fer4_13 PF13370.6 gi|325968015|ref|YP_004244207.1| - 0.093 13.3 12.8 0.26 11.9 2.9 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Nitrate_red_gam PF02665.14 gi|325968016|ref|YP_004244208.1| - 0.011 15.3 14.0 0.075 12.6 3.0 2.8 1 1 1 2 2 2 0 Nitrate reductase gamma subunit Oxidored_q3 PF00499.20 gi|325968016|ref|YP_004244208.1| - 0.83 9.4 15.7 1.6 8.4 8.1 2.7 2 1 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2070 PF09843.9 gi|325968016|ref|YP_004244208.1| - 6.2 5.0 8.0 2.6 6.2 6.0 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) pP_pnuc_2 PF18166.1 gi|325968017|ref|YP_004244209.1| - 0.12 12.4 0.8 0.25 11.4 0.8 1.4 1 0 0 1 1 1 0 Predicted pPIWI-associating nuclease Fer4_8 PF13183.6 gi|325968018|ref|YP_004244210.1| - 1.4e-11 44.6 1.0 3.6e-11 43.3 1.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|325968018|ref|YP_004244210.1| - 4.8e-10 39.5 0.4 1.5e-08 34.7 0.0 2.8 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_7 PF12838.7 gi|325968018|ref|YP_004244210.1| - 1.4e-09 38.4 12.7 2e-07 31.5 3.6 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968018|ref|YP_004244210.1| - 4.4e-08 33.6 12.7 1.7e-06 28.4 4.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968018|ref|YP_004244210.1| - 4e-07 30.1 2.7 0.0015 18.7 0.5 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968018|ref|YP_004244210.1| - 1.2e-06 28.5 6.1 7.2e-06 26.0 6.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325968018|ref|YP_004244210.1| - 0.0001 23.1 11.7 0.0015 19.4 7.2 3.2 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|325968018|ref|YP_004244210.1| - 0.00094 19.5 9.9 0.0017 18.7 2.1 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|325968018|ref|YP_004244210.1| - 0.0018 19.1 4.8 0.016 16.0 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968018|ref|YP_004244210.1| - 0.0025 17.6 3.7 0.0025 17.6 3.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968018|ref|YP_004244210.1| - 0.0055 16.8 6.3 0.08 13.1 1.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968018|ref|YP_004244210.1| - 0.0086 16.1 4.0 0.0086 16.1 4.0 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|325968018|ref|YP_004244210.1| - 0.0087 16.1 3.0 0.0087 16.1 3.0 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|325968018|ref|YP_004244210.1| - 0.011 16.0 3.4 0.061 13.5 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325968018|ref|YP_004244210.1| - 0.034 15.1 5.1 0.034 15.1 5.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|325968018|ref|YP_004244210.1| - 0.42 11.4 2.0 0.92 10.3 0.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Nitrate_red_gam PF02665.14 gi|325968019|ref|YP_004244211.1| - 3e-28 98.9 17.7 4.2e-27 95.1 17.7 2.1 1 1 0 1 1 1 1 Nitrate reductase gamma subunit DrsE_2 PF13686.6 gi|325968021|ref|YP_004244213.1| - 1.5e-10 41.2 1.7 5e-10 39.5 0.7 1.8 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|325968021|ref|YP_004244213.1| - 4e-09 36.9 0.1 4.8e-09 36.6 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family NIR_SIR PF01077.22 gi|325968022|ref|YP_004244214.1| - 1.7e-19 69.8 0.0 2.5e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|325968022|ref|YP_004244214.1| - 0.00012 21.9 0.0 0.00022 21.0 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.7 gi|325968022|ref|YP_004244214.1| - 0.032 14.8 0.5 0.097 13.3 0.1 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain NIR_SIR PF01077.22 gi|325968023|ref|YP_004244215.1| - 8e-32 110.0 0.0 1.2e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|325968023|ref|YP_004244215.1| - 6.6e-08 32.3 0.0 1.1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|325968023|ref|YP_004244215.1| - 4.8e-05 23.0 11.5 0.0013 18.4 5.5 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325968023|ref|YP_004244215.1| - 9.7e-05 22.9 1.2 9.7e-05 22.9 1.2 2.2 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|325968023|ref|YP_004244215.1| - 0.00014 22.5 3.4 0.1 13.4 0.2 3.2 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|325968023|ref|YP_004244215.1| - 0.00046 20.7 9.3 0.0081 16.7 0.5 2.6 3 0 0 3 3 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|325968023|ref|YP_004244215.1| - 0.006 16.6 4.5 0.006 16.6 4.5 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325968023|ref|YP_004244215.1| - 0.012 15.8 1.1 0.012 15.8 1.1 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968023|ref|YP_004244215.1| - 0.016 15.3 3.8 0.016 15.3 3.8 2.8 4 0 0 4 4 3 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968023|ref|YP_004244215.1| - 0.021 15.0 0.8 0.021 15.0 0.8 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|325968023|ref|YP_004244215.1| - 0.044 14.2 0.1 0.044 14.2 0.1 2.4 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968023|ref|YP_004244215.1| - 3.8 7.7 12.0 0.062 13.4 3.1 2.5 3 1 1 4 4 3 0 4Fe-4S dicluster domain DsrC PF04358.13 gi|325968025|ref|YP_004244217.1| - 2.1e-35 121.5 0.0 2.4e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein HEPN PF05168.14 gi|325968026|ref|YP_004244218.1| - 1.1e-22 80.4 0.0 1.3e-22 80.1 0.0 1.0 1 0 0 1 1 1 1 HEPN domain MIT PF04212.18 gi|325968026|ref|YP_004244218.1| - 0.04 14.0 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain TPR_10 PF13374.6 gi|325968026|ref|YP_004244218.1| - 0.11 12.4 0.1 3.6 7.6 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.6 gi|325968026|ref|YP_004244218.1| - 0.45 10.8 4.1 1.9 8.9 0.1 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|325968026|ref|YP_004244218.1| - 1.1 9.6 3.3 22 5.5 0.0 3.3 2 1 0 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|325968027|ref|YP_004244219.1| - 2e-08 34.4 0.1 3.6e-08 33.6 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|325968027|ref|YP_004244219.1| - 5.1e-07 29.7 0.0 7.8e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|325968027|ref|YP_004244219.1| - 0.0047 16.7 0.0 0.029 14.2 0.0 1.9 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 Ku_N PF03731.15 gi|325968027|ref|YP_004244219.1| - 0.045 13.5 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Ku70/Ku80 N-terminal alpha/beta domain DUF4364 PF14277.6 gi|325968028|ref|YP_004244220.1| - 0.041 13.6 0.0 0.05 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Cdc6_C PF09079.11 gi|325968028|ref|YP_004244220.1| - 0.042 13.8 0.1 0.11 12.5 0.1 1.8 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain DUF3116 PF11313.8 gi|325968028|ref|YP_004244220.1| - 0.18 11.7 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) Aldo_ket_red PF00248.21 gi|325968029|ref|YP_004244221.1| - 9.9e-57 192.4 0.0 1.6e-54 185.1 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DUF1664 PF07889.12 gi|325968031|ref|YP_004244223.1| - 0.0011 19.0 0.5 0.0012 18.9 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) HSBP1 PF06825.12 gi|325968031|ref|YP_004244223.1| - 0.039 13.8 0.1 0.045 13.6 0.1 1.2 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Methyltransf_14 PF08484.11 gi|325968031|ref|YP_004244223.1| - 0.051 13.4 0.3 0.051 13.4 0.3 1.0 1 0 0 1 1 1 0 C-methyltransferase C-terminal domain YtxH PF12732.7 gi|325968031|ref|YP_004244223.1| - 0.1 13.1 1.7 0.12 12.9 1.7 1.1 1 0 0 1 1 1 0 YtxH-like protein vATP-synt_AC39 PF01992.16 gi|325968032|ref|YP_004244224.1| - 5.4e-33 114.9 0.1 7.1e-33 114.5 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ApoLp-III PF07464.11 gi|325968033|ref|YP_004244225.1| - 0.00037 20.6 4.9 0.0014 18.8 4.9 1.7 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) Apolipoprotein PF01442.18 gi|325968033|ref|YP_004244225.1| - 0.0045 16.9 3.4 0.0064 16.4 3.4 1.4 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain V-ATPase_G_2 PF16999.5 gi|325968033|ref|YP_004244225.1| - 0.0058 17.0 3.7 0.017 15.5 3.7 1.6 1 1 1 2 2 2 1 Vacuolar (H+)-ATPase G subunit DUF3510 PF12022.8 gi|325968033|ref|YP_004244225.1| - 0.0062 16.9 1.2 0.0088 16.4 0.8 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF3510) OmpH PF03938.14 gi|325968033|ref|YP_004244225.1| - 0.0065 16.8 5.3 0.012 16.0 5.3 1.4 1 1 0 1 1 1 1 Outer membrane protein (OmpH-like) ARGLU PF15346.6 gi|325968033|ref|YP_004244225.1| - 0.008 16.1 11.5 0.011 15.7 11.5 1.1 1 0 0 1 1 1 1 Arginine and glutamate-rich 1 Fib_alpha PF08702.10 gi|325968033|ref|YP_004244225.1| - 0.0094 16.1 7.7 0.025 14.8 6.0 1.9 1 1 1 2 2 2 1 Fibrinogen alpha/beta chain family DUF445 PF04286.12 gi|325968033|ref|YP_004244225.1| - 0.013 15.3 6.5 3.1 7.5 0.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF445) Mer2 PF09074.10 gi|325968033|ref|YP_004244225.1| - 0.013 15.3 4.3 0.017 14.9 4.3 1.1 1 0 0 1 1 1 0 Mer2 V-ATPase_G PF03179.15 gi|325968033|ref|YP_004244225.1| - 0.027 15.0 7.5 0.035 14.6 7.1 1.4 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit REF PF05755.12 gi|325968033|ref|YP_004244225.1| - 0.03 14.2 2.4 0.04 13.7 2.4 1.3 1 1 0 1 1 1 0 Rubber elongation factor protein (REF) Mis12 PF05859.12 gi|325968033|ref|YP_004244225.1| - 0.033 14.2 1.6 0.05 13.6 1.6 1.3 1 0 0 1 1 1 0 Mis12 protein LtuB PF17455.2 gi|325968033|ref|YP_004244225.1| - 0.037 14.6 1.8 0.046 14.3 1.2 1.5 1 1 0 1 1 1 0 Late transcription unit B Mitofilin PF09731.9 gi|325968033|ref|YP_004244225.1| - 0.044 12.6 6.4 0.048 12.5 6.4 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein IMD PF08397.11 gi|325968033|ref|YP_004244225.1| - 0.046 13.1 3.0 0.061 12.7 2.6 1.3 1 1 0 1 1 1 0 IRSp53/MIM homology domain Phasin PF05597.11 gi|325968033|ref|YP_004244225.1| - 0.052 13.5 6.6 0.11 12.5 2.8 2.0 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Leuk-A4-hydro_C PF09127.11 gi|325968033|ref|YP_004244225.1| - 0.058 13.5 0.6 0.25 11.4 0.1 1.9 1 1 1 2 2 2 0 Leukotriene A4 hydrolase, C-terminal Ribosomal_S13 PF00416.22 gi|325968033|ref|YP_004244225.1| - 0.064 13.7 3.2 0.077 13.4 2.6 1.4 1 1 0 1 1 1 0 Ribosomal protein S13/S18 Sld5 PF05916.11 gi|325968033|ref|YP_004244225.1| - 0.075 13.5 0.9 0.11 13.0 0.8 1.4 1 1 0 1 1 1 0 GINS complex protein Spore_II_R PF09551.10 gi|325968033|ref|YP_004244225.1| - 0.14 12.6 3.0 0.18 12.3 3.0 1.3 1 0 0 1 1 1 0 Stage II sporulation protein R (spore_II_R) CBFD_NFYB_HMF PF00808.23 gi|325968033|ref|YP_004244225.1| - 0.14 12.4 1.3 0.6 10.4 1.1 2.1 1 1 1 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Taeniidae_ag PF05596.11 gi|325968033|ref|YP_004244225.1| - 0.22 11.5 3.7 0.42 10.6 0.3 2.6 2 2 1 3 3 3 0 Taeniidae antigen AAA_32 PF13654.6 gi|325968033|ref|YP_004244225.1| - 0.22 10.2 7.4 0.58 8.9 4.0 2.0 1 1 1 2 2 2 0 AAA domain DUF1542 PF07564.11 gi|325968033|ref|YP_004244225.1| - 0.23 11.6 3.3 3.3 7.9 0.1 2.3 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1542) POTRA_TamA_1 PF17243.2 gi|325968033|ref|YP_004244225.1| - 0.4 10.8 3.7 3.2 7.9 1.2 2.4 1 1 1 2 2 2 0 POTRA domain TamA domain 1 RNase_J_C PF17770.1 gi|325968033|ref|YP_004244225.1| - 0.58 11.2 5.6 1.6 9.9 2.3 2.3 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain cwf21 PF08312.12 gi|325968033|ref|YP_004244225.1| - 0.69 10.1 15.0 0.88 9.8 5.8 3.4 1 1 1 2 2 2 0 cwf21 domain YtxH PF12732.7 gi|325968033|ref|YP_004244225.1| - 0.75 10.4 8.3 46 4.6 8.3 2.6 1 1 0 1 1 1 0 YtxH-like protein Selenoprotein_S PF06936.11 gi|325968033|ref|YP_004244225.1| - 0.94 9.3 5.3 1.2 8.9 5.3 1.2 1 0 0 1 1 1 0 Selenoprotein S (SelS) dCache_2 PF08269.11 gi|325968033|ref|YP_004244225.1| - 0.97 8.5 9.3 0.56 9.3 4.5 1.6 1 1 1 2 2 2 0 Cache domain PdaC PF13739.6 gi|325968033|ref|YP_004244225.1| - 1.5 9.9 5.0 5.1 8.1 3.7 2.0 1 1 1 2 2 2 0 Deacetylase PdaC DUF826 PF05696.11 gi|325968033|ref|YP_004244225.1| - 1.7 8.8 7.1 1.5 9.0 1.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF826) LMBR1 PF04791.16 gi|325968033|ref|YP_004244225.1| - 2.6 6.9 4.5 2.8 6.8 4.5 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein PsiE PF06146.12 gi|325968034|ref|YP_004244226.1| - 1.2e-10 41.6 8.5 1.2e-10 41.6 8.5 1.9 2 1 0 2 2 2 1 Phosphate-starvation-inducible E AsnC_trans_reg2 PF17805.1 gi|325968035|ref|YP_004244227.1| - 4.8e-34 116.4 0.3 4e-16 58.9 0.1 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain Methyltr_RsmB-F PF01189.17 gi|325968037|ref|YP_004244229.1| - 2.1e-42 145.0 0.0 2.9e-42 144.6 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|325968037|ref|YP_004244229.1| - 7.6e-17 61.1 2.3 2.3e-16 59.5 2.2 1.9 2 0 0 2 2 2 1 PUA domain FtsJ PF01728.19 gi|325968037|ref|YP_004244229.1| - 3.7e-06 27.2 0.0 7.7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|325968037|ref|YP_004244229.1| - 4.3e-06 26.6 0.0 7.3e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0113 PF03657.13 gi|325968037|ref|YP_004244229.1| - 0.0026 18.0 0.4 0.0056 16.9 0.4 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain Methyltransf_25 PF13649.6 gi|325968037|ref|YP_004244229.1| - 0.0082 16.8 0.0 0.22 12.2 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|325968037|ref|YP_004244229.1| - 0.0096 16.6 0.0 0.11 13.1 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|325968037|ref|YP_004244229.1| - 0.011 16.2 0.0 0.056 14.0 0.0 2.0 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF GCD14 PF08704.10 gi|325968037|ref|YP_004244229.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_12 PF08242.12 gi|325968037|ref|YP_004244229.1| - 0.023 15.4 0.0 0.058 14.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|325968037|ref|YP_004244229.1| - 0.025 13.7 0.0 0.11 11.6 0.0 2.0 2 0 0 2 2 2 0 Fibrillarin RXLR_WY PF18634.1 gi|325968037|ref|YP_004244229.1| - 0.17 11.8 1.7 0.21 11.5 0.2 1.9 2 0 0 2 2 2 0 RXLR phytopathogen effector protein WY-domain tRNA_edit PF04073.15 gi|325968038|ref|YP_004244230.1| - 1.9e-08 34.4 0.0 2.2e-08 34.2 0.0 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain GHMP_kinases_C PF08544.13 gi|325968039|ref|YP_004244231.1| - 3.2e-13 49.9 0.0 8.1e-13 48.5 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|325968039|ref|YP_004244231.1| - 6.4e-12 45.5 0.4 6.4e-12 45.5 0.4 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.9 gi|325968039|ref|YP_004244231.1| - 9e-12 44.4 0.0 1.7e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature GalP_UDP_tr_C PF02744.17 gi|325968040|ref|YP_004244232.1| - 9.7e-19 67.7 0.0 1.4e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain GalP_UDP_transf PF01087.22 gi|325968040|ref|YP_004244232.1| - 2.6e-16 60.6 0.1 9.9e-16 58.7 0.1 1.9 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain DUF4921 PF16268.5 gi|325968040|ref|YP_004244232.1| - 4e-05 22.6 0.0 5.3e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4921) DcpS_C PF11969.8 gi|325968040|ref|YP_004244232.1| - 5.9e-05 23.5 1.0 0.00025 21.5 0.5 2.0 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.23 gi|325968040|ref|YP_004244232.1| - 9.7e-05 23.0 0.1 0.018 15.8 0.1 2.2 2 0 0 2 2 2 1 HIT domain DUF4931 PF16285.5 gi|325968040|ref|YP_004244232.1| - 0.016 14.6 0.4 0.076 12.3 0.0 2.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4931) DUF5078 PF16877.5 gi|325968040|ref|YP_004244232.1| - 0.11 13.0 0.1 0.25 11.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5078) Pyr_redox_2 PF07992.14 gi|325968041|ref|YP_004244233.1| - 7e-46 156.8 0.1 8.8e-46 156.5 0.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|325968041|ref|YP_004244233.1| - 8.6e-27 94.2 1.3 5.2e-20 71.9 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325968041|ref|YP_004244233.1| - 1.2e-17 64.2 1.3 2.6e-13 50.3 0.0 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|325968041|ref|YP_004244233.1| - 1.2e-09 37.8 5.1 1.8e-05 24.0 1.1 3.6 4 0 0 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|325968041|ref|YP_004244233.1| - 2.6e-08 33.6 2.8 8.4e-07 28.7 0.1 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|325968041|ref|YP_004244233.1| - 5.8e-08 32.4 0.7 0.00021 20.7 0.5 2.1 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|325968041|ref|YP_004244233.1| - 2.8e-07 29.6 2.7 0.00019 20.3 0.9 3.3 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|325968041|ref|YP_004244233.1| - 1.8e-06 27.3 5.8 6.1e-06 25.6 0.9 2.6 3 0 0 3 3 3 1 FAD binding domain K_oxygenase PF13434.6 gi|325968041|ref|YP_004244233.1| - 6.6e-06 25.5 0.1 0.0021 17.2 0.0 2.4 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|325968041|ref|YP_004244233.1| - 1.1e-05 24.8 0.9 0.00051 19.4 0.2 2.3 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|325968041|ref|YP_004244233.1| - 1.3e-05 25.3 3.8 0.013 15.7 1.5 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|325968041|ref|YP_004244233.1| - 0.00021 21.0 10.0 0.0019 17.8 4.3 2.6 3 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|325968041|ref|YP_004244233.1| - 0.00034 21.0 0.1 0.1 13.0 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|325968041|ref|YP_004244233.1| - 0.0042 16.4 0.7 0.11 11.7 0.2 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|325968041|ref|YP_004244233.1| - 0.0047 16.9 0.4 12 5.8 0.0 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|325968041|ref|YP_004244233.1| - 0.017 14.2 0.6 0.16 11.0 0.3 2.4 2 1 1 3 3 3 0 Lycopene cyclase protein PALP PF00291.25 gi|325968041|ref|YP_004244233.1| - 0.028 13.8 0.6 2.8 7.3 0.1 2.8 3 0 0 3 3 3 0 Pyridoxal-phosphate dependent enzyme FMO-like PF00743.19 gi|325968041|ref|YP_004244233.1| - 0.11 10.9 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like DUF5510 PF17629.2 gi|325968041|ref|YP_004244233.1| - 0.25 11.3 0.2 0.25 11.3 0.2 2.4 3 0 0 3 3 3 0 Family of unknown function (DUF5510) Trp_halogenase PF04820.14 gi|325968041|ref|YP_004244233.1| - 0.41 9.4 4.3 1.7 7.4 1.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase HTH_11 PF08279.12 gi|325968042|ref|YP_004244234.1| - 0.0026 17.7 0.1 0.0084 16.0 0.1 1.9 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.12 gi|325968042|ref|YP_004244234.1| - 0.024 14.4 0.2 0.069 12.9 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_36 PF13730.6 gi|325968042|ref|YP_004244234.1| - 0.028 14.4 0.1 0.053 13.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|325968042|ref|YP_004244234.1| - 0.032 13.8 0.1 0.094 12.3 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF1641 PF07849.11 gi|325968043|ref|YP_004244235.1| - 0.0011 18.8 0.4 0.0011 18.8 0.4 3.4 2 1 1 3 3 3 1 Protein of unknown function (DUF1641) Mod_r PF07200.13 gi|325968043|ref|YP_004244235.1| - 0.034 14.3 1.8 1.9 8.6 0.1 2.6 2 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Pyr_redox_2 PF07992.14 gi|325968044|ref|YP_004244236.1| - 1.7e-16 60.4 0.0 6e-15 55.2 0.0 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|325968044|ref|YP_004244236.1| - 3.6e-05 23.8 0.0 0.23 11.4 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|325968044|ref|YP_004244236.1| - 0.00023 21.7 0.0 0.12 12.9 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325968044|ref|YP_004244236.1| - 0.00055 20.1 0.0 0.0014 18.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|325968044|ref|YP_004244236.1| - 0.0015 17.4 0.0 0.012 14.3 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|325968044|ref|YP_004244236.1| - 0.0033 16.6 0.0 0.14 11.2 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|325968044|ref|YP_004244236.1| - 0.0049 16.5 0.0 0.24 10.9 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|325968044|ref|YP_004244236.1| - 0.0064 15.8 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|325968044|ref|YP_004244236.1| - 0.032 13.5 0.0 0.076 12.3 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF1188 PF06690.11 gi|325968044|ref|YP_004244236.1| - 0.072 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) TrkA_N PF02254.18 gi|325968044|ref|YP_004244236.1| - 0.076 13.3 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain GIDA PF01134.22 gi|325968044|ref|YP_004244236.1| - 0.089 11.9 0.0 4.3 6.3 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A TusA PF01206.17 gi|325968045|ref|YP_004244237.1| - 8.5e-19 67.2 0.0 9.8e-19 67.0 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.6 gi|325968046|ref|YP_004244238.1| - 2.9e-15 56.5 0.9 4.5e-07 29.9 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|325968046|ref|YP_004244238.1| - 4.6e-09 36.7 0.0 6.1e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.10 gi|325968046|ref|YP_004244238.1| - 0.068 13.0 2.0 1.2 8.9 0.0 2.9 3 0 0 3 3 3 0 Anti-repressor SinI Pyr_redox_2 PF07992.14 gi|325968049|ref|YP_004244241.1| - 1.2e-12 47.7 1.1 0.00064 19.0 0.2 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|325968049|ref|YP_004244241.1| - 8.4e-10 37.9 0.0 1.8e-05 23.6 0.0 2.4 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|325968049|ref|YP_004244241.1| - 1.3e-09 38.2 0.3 0.00018 21.2 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|325968049|ref|YP_004244241.1| - 4.1e-09 36.0 1.5 0.00054 19.2 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|325968049|ref|YP_004244241.1| - 1.5e-08 34.3 0.2 0.03 13.6 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|325968049|ref|YP_004244241.1| - 6.5e-06 25.5 0.2 0.00049 19.3 0.0 2.8 3 0 0 3 3 3 1 FAD binding domain Lycopene_cycl PF05834.12 gi|325968049|ref|YP_004244241.1| - 1.6e-05 24.1 0.0 0.00024 20.3 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|325968049|ref|YP_004244241.1| - 8.8e-05 22.7 0.0 0.0048 17.1 0.0 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|325968049|ref|YP_004244241.1| - 0.00033 21.1 0.0 5.1 7.7 0.0 3.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|325968049|ref|YP_004244241.1| - 0.00048 19.4 0.1 0.0042 16.4 0.0 2.4 3 0 0 3 3 3 1 Thi4 family NAD_binding_9 PF13454.6 gi|325968049|ref|YP_004244241.1| - 0.00072 19.6 0.0 0.015 15.3 0.0 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|325968049|ref|YP_004244241.1| - 0.012 14.9 0.3 0.023 14.0 0.0 1.6 2 0 0 2 2 2 0 FAD binding domain FAD_oxidored PF12831.7 gi|325968049|ref|YP_004244241.1| - 0.033 13.5 0.2 0.061 12.7 0.2 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|325968049|ref|YP_004244241.1| - 0.063 12.1 0.0 0.098 11.5 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Adenylsucc_synt PF00709.21 gi|325968050|ref|YP_004244242.1| - 4.2e-73 246.7 0.7 6.9e-37 127.4 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Lyase_1 PF00206.20 gi|325968051|ref|YP_004244243.1| - 1.3e-37 129.9 0.0 1.8e-37 129.4 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|325968051|ref|YP_004244243.1| - 5.8e-30 103.8 0.1 1.6e-29 102.3 0.0 1.8 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal MazE_antitoxin PF04014.18 gi|325968054|ref|YP_004244246.1| - 2.4e-11 43.3 0.5 4.2e-11 42.5 0.5 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325968054|ref|YP_004244246.1| - 2.1e-05 24.9 0.5 2.8e-05 24.5 0.4 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin ADC PF06314.11 gi|325968055|ref|YP_004244247.1| - 9.8e-45 152.9 0.0 1.2e-44 152.7 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) MFS_1 PF07690.16 gi|325968056|ref|YP_004244248.1| - 3.5e-55 187.4 47.7 3.5e-55 187.4 47.7 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Phage_holin_3_6 PF07332.11 gi|325968056|ref|YP_004244248.1| - 0.0081 16.2 0.5 0.0081 16.2 0.5 4.8 2 2 1 3 3 3 1 Putative Actinobacterial Holin-X, holin superfamily III Sugar_tr PF00083.24 gi|325968056|ref|YP_004244248.1| - 0.0092 14.9 36.3 0.025 13.4 34.7 2.1 1 1 0 1 1 1 1 Sugar (and other) transporter TMEM100 PF16311.5 gi|325968056|ref|YP_004244248.1| - 6 6.5 5.1 1.2 8.7 0.8 2.0 2 0 0 2 2 2 0 Transmembrane protein 100 ILVD_EDD PF00920.21 gi|325968057|ref|YP_004244249.1| - 4.4e-220 731.7 0.2 4.9e-220 731.5 0.2 1.0 1 0 0 1 1 1 1 Dehydratase family Iso_dh PF00180.20 gi|325968058|ref|YP_004244250.1| - 1.4e-70 238.2 0.0 1.7e-70 237.9 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase NotI PF12183.8 gi|325968058|ref|YP_004244250.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease NotI adh_short_C2 PF13561.6 gi|325968059|ref|YP_004244251.1| - 3.1e-65 220.0 0.8 3.5e-65 219.8 0.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|325968059|ref|YP_004244251.1| - 8.6e-47 159.1 1.9 1e-46 158.9 1.9 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|325968059|ref|YP_004244251.1| - 9.5e-15 55.0 0.1 1.3e-14 54.5 0.1 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|325968059|ref|YP_004244251.1| - 0.0042 17.0 1.0 0.024 14.5 0.2 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|325968059|ref|YP_004244251.1| - 0.11 13.2 0.1 0.67 10.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain PdxA PF04166.12 gi|325968060|ref|YP_004244252.1| - 3.9e-93 311.9 0.0 4.7e-93 311.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Iso_dh PF00180.20 gi|325968060|ref|YP_004244252.1| - 0.032 13.4 0.0 0.17 11.0 0.0 1.9 2 0 0 2 2 2 0 Isocitrate/isopropylmalate dehydrogenase SBD_N PF07005.11 gi|325968061|ref|YP_004244253.1| - 2.5e-16 60.1 0.0 5.4e-14 52.5 0.0 2.1 1 1 1 2 2 2 2 Sugar-binding N-terminal domain NBD_C PF17042.5 gi|325968061|ref|YP_004244253.1| - 6.4e-06 26.8 1.0 0.0034 17.9 0.2 2.7 3 1 0 3 3 3 2 Nucleotide-binding C-terminal domain CCG PF02754.16 gi|325968062|ref|YP_004244254.1| - 1.3e-05 25.3 0.0 0.0012 19.0 0.2 2.7 2 1 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|325968063|ref|YP_004244255.1| - 1.4e-10 41.4 1.3 1.9e-10 41.0 1.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968063|ref|YP_004244255.1| - 7.7e-08 32.8 1.7 1.1e-07 32.3 1.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968063|ref|YP_004244255.1| - 2e-07 31.0 2.9 0.001 19.1 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968063|ref|YP_004244255.1| - 5.4e-05 23.7 10.9 0.00053 20.5 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968063|ref|YP_004244255.1| - 0.0018 18.4 9.5 0.088 13.0 10.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968063|ref|YP_004244255.1| - 0.0077 16.0 12.7 0.045 13.6 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968063|ref|YP_004244255.1| - 0.013 15.6 7.1 0.84 9.8 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|325968063|ref|YP_004244255.1| - 0.025 14.4 5.6 0.077 12.8 0.7 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|325968063|ref|YP_004244255.1| - 0.11 12.8 4.9 0.45 10.7 1.0 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|325968063|ref|YP_004244255.1| - 0.24 12.3 7.8 3.2 8.7 1.4 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968063|ref|YP_004244255.1| - 0.56 10.4 13.3 1.3 9.2 4.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|325968063|ref|YP_004244255.1| - 0.62 11.0 11.4 7.7 7.5 11.6 2.0 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain FAD-oxidase_C PF02913.19 gi|325968064|ref|YP_004244256.1| - 2.6e-42 145.2 0.0 4e-42 144.6 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|325968064|ref|YP_004244256.1| - 2e-36 124.8 0.1 4.9e-36 123.5 0.1 1.7 1 0 0 1 1 1 1 FAD binding domain UbiA PF01040.18 gi|325968065|ref|YP_004244257.1| - 8.9e-31 107.1 26.2 1.4e-30 106.4 26.2 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family PepSY_TM PF03929.16 gi|325968065|ref|YP_004244257.1| - 1 9.0 6.7 0.23 11.1 0.6 2.5 2 0 0 2 2 2 0 PepSY-associated TM region MazE_antitoxin PF04014.18 gi|325968066|ref|YP_004244258.1| - 1e-05 25.3 0.1 0.0025 17.7 0.0 2.5 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325968066|ref|YP_004244258.1| - 0.15 12.5 0.2 1.5 9.3 0.0 2.4 2 1 1 3 3 3 0 prlF antitoxin for toxin YhaV_toxin DUF3040 PF11239.8 gi|325968068|ref|YP_004244260.1| - 0.018 15.3 1.4 0.018 15.3 1.4 4.9 3 1 1 4 4 4 0 Protein of unknown function (DUF3040) Radical_SAM PF04055.21 gi|325968069|ref|YP_004244261.1| - 2.7e-13 50.6 0.0 5e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily eIF-5_eIF-2B PF01873.17 gi|325968070|ref|YP_004244262.1| - 4.1e-30 104.1 0.0 5e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|325968070|ref|YP_004244262.1| - 0.002 17.6 0.6 0.0032 17.0 0.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|325968070|ref|YP_004244262.1| - 0.0048 17.2 0.3 0.0076 16.6 0.3 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar USP7_ICP0_bdg PF12436.8 gi|325968070|ref|YP_004244262.1| - 0.0076 15.6 0.0 0.0092 15.3 0.0 1.2 1 0 0 1 1 1 1 ICP0-binding domain of Ubiquitin-specific protease 7 Rubredoxin_2 PF18073.1 gi|325968070|ref|YP_004244262.1| - 0.02 14.6 0.1 7.3 6.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|325968070|ref|YP_004244262.1| - 0.065 13.4 0.1 11 6.2 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain HTH_38 PF13936.6 gi|325968070|ref|YP_004244262.1| - 0.07 12.9 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Elf1 PF05129.13 gi|325968070|ref|YP_004244262.1| - 0.11 12.6 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|325968070|ref|YP_004244262.1| - 0.48 10.4 3.6 0.57 10.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) CCG PF02754.16 gi|325968072|ref|YP_004244264.1| - 3.2e-09 36.9 0.0 3.3e-06 27.2 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain NT5C PF06941.12 gi|325968072|ref|YP_004244264.1| - 0.08 12.8 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) PAC2 PF09754.9 gi|325968072|ref|YP_004244264.1| - 0.13 12.3 0.0 2.8 7.9 0.0 2.1 1 1 1 2 2 2 0 PAC2 family sCache_2 PF17200.4 gi|325968073|ref|YP_004244265.1| - 0.016 15.1 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Single Cache domain 2 DUF4596 PF15363.6 gi|325968073|ref|YP_004244265.1| - 0.08 13.2 0.1 0.14 12.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4596) Peptidase_M24 PF00557.24 gi|325968074|ref|YP_004244266.1| - 2.4e-38 131.9 0.0 3.1e-38 131.6 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|325968074|ref|YP_004244266.1| - 1.6e-16 61.2 0.0 2.6e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain DUF998 PF06197.13 gi|325968075|ref|YP_004244267.1| - 4.6e-26 91.5 19.1 5.4e-26 91.3 19.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) L6_membrane PF05805.12 gi|325968075|ref|YP_004244267.1| - 0.0086 15.7 1.0 0.0086 15.7 1.0 1.5 2 0 0 2 2 2 1 L6 membrane protein Thioredoxin_4 PF13462.6 gi|325968076|ref|YP_004244268.1| - 1.7e-09 38.1 0.0 2.5e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|325968076|ref|YP_004244268.1| - 2.9e-06 27.7 0.0 9.1e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|325968076|ref|YP_004244268.1| - 0.0018 18.1 0.2 0.45 10.3 0.0 2.3 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Proton_antipo_M PF00361.20 gi|325968078|ref|YP_004244270.1| - 3.3e-24 85.6 35.0 3.3e-24 85.6 35.0 3.5 1 1 1 2 2 2 1 Proton-conducting membrane transporter DUF2537 PF10801.8 gi|325968078|ref|YP_004244270.1| - 0.0088 16.3 1.1 0.0088 16.3 1.1 5.1 5 2 2 7 7 7 1 Protein of unknown function (DUF2537) ATP1G1_PLM_MAT8 PF02038.16 gi|325968078|ref|YP_004244270.1| - 2.4 7.7 5.9 0.46 10.0 0.9 2.6 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Oxidored_q2 PF00420.24 gi|325968079|ref|YP_004244271.1| - 7.5e-06 25.5 10.6 1.5e-05 24.5 10.6 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Fun_ATP-synt_8 PF05933.13 gi|325968079|ref|YP_004244271.1| - 0.008 16.3 8.2 0.014 15.5 1.1 2.4 2 0 0 2 2 2 2 Fungal ATP synthase protein 8 (A6L) NapE PF06796.11 gi|325968079|ref|YP_004244271.1| - 0.63 9.6 4.5 0.87 9.2 3.2 1.9 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE Oxidored_q3 PF00499.20 gi|325968080|ref|YP_004244272.1| - 0.0036 17.0 20.4 0.0036 17.0 20.4 1.8 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CobA_CobO_BtuR PF02572.15 gi|325968081|ref|YP_004244273.1| - 4.5e-41 141.0 0.0 7.1e-41 140.3 0.0 1.3 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TniB PF05621.11 gi|325968081|ref|YP_004244273.1| - 0.012 15.0 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial TniB protein AAA PF00004.29 gi|325968081|ref|YP_004244273.1| - 0.2 12.1 0.2 0.99 9.8 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BtpA PF03437.15 gi|325968082|ref|YP_004244274.1| - 2.1e-72 243.6 1.1 2.4e-72 243.5 1.1 1.0 1 0 0 1 1 1 1 BtpA family CinA_KH PF18146.1 gi|325968082|ref|YP_004244274.1| - 0.12 12.5 0.1 0.52 10.5 0.0 2.0 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain HTH_5 PF01022.20 gi|325968084|ref|YP_004244276.1| - 3e-08 33.4 0.6 4.6e-08 32.8 0.6 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|325968084|ref|YP_004244276.1| - 3.4e-05 23.8 0.1 5e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|325968084|ref|YP_004244276.1| - 0.00064 19.6 0.4 0.0012 18.8 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|325968084|ref|YP_004244276.1| - 0.00091 19.0 0.0 0.0088 15.8 0.0 2.2 1 1 1 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|325968084|ref|YP_004244276.1| - 0.0011 19.0 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|325968084|ref|YP_004244276.1| - 0.0024 17.7 0.0 0.0053 16.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|325968084|ref|YP_004244276.1| - 0.0056 16.6 0.5 0.011 15.7 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|325968084|ref|YP_004244276.1| - 0.0077 15.8 0.1 0.015 14.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|325968084|ref|YP_004244276.1| - 0.041 14.4 0.1 0.075 13.5 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|325968084|ref|YP_004244276.1| - 0.05 13.5 0.1 0.082 12.9 0.1 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_28 PF13518.6 gi|325968084|ref|YP_004244276.1| - 0.052 13.7 0.0 0.095 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|325968084|ref|YP_004244276.1| - 0.11 12.3 0.0 0.35 10.7 0.0 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain HALZ PF02183.18 gi|325968085|ref|YP_004244277.1| - 6.9e-06 26.2 6.1 0.00021 21.4 1.3 1.9 1 1 1 2 2 2 2 Homeobox associated leucine zipper BBP1_C PF15272.6 gi|325968085|ref|YP_004244277.1| - 0.005 16.7 0.9 0.0073 16.2 0.9 1.1 1 0 0 1 1 1 1 Spindle pole body component BBP1, C-terminal BLOC1_2 PF10046.9 gi|325968085|ref|YP_004244277.1| - 0.0061 16.8 3.8 0.0096 16.2 3.8 1.3 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliD_N PF02465.18 gi|325968085|ref|YP_004244277.1| - 0.008 16.8 1.7 0.02 15.6 1.7 1.6 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 N-terminus HemX PF04375.14 gi|325968085|ref|YP_004244277.1| - 0.0081 15.5 0.8 0.011 15.0 0.8 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase Biotin_lipoyl_2 PF13533.6 gi|325968085|ref|YP_004244277.1| - 0.034 14.0 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Biotin-lipoyl like Spc7 PF08317.11 gi|325968085|ref|YP_004244277.1| - 0.055 12.4 0.0 0.077 11.9 0.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein ZapB PF06005.12 gi|325968085|ref|YP_004244277.1| - 0.093 13.2 0.2 0.15 12.5 0.2 1.2 1 0 0 1 1 1 0 Cell division protein ZapB IFT57 PF10498.9 gi|325968085|ref|YP_004244277.1| - 0.1 11.6 1.8 0.14 11.1 1.8 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF4472 PF14739.6 gi|325968085|ref|YP_004244277.1| - 0.14 12.9 0.4 0.25 12.1 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) DivIC PF04977.15 gi|325968085|ref|YP_004244277.1| - 0.22 11.3 0.4 0.37 10.6 0.4 1.4 1 0 0 1 1 1 0 Septum formation initiator DUF3450 PF11932.8 gi|325968085|ref|YP_004244277.1| - 0.23 10.8 1.4 0.35 10.2 1.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Mod_r PF07200.13 gi|325968085|ref|YP_004244277.1| - 0.24 11.5 3.0 0.35 11.0 3.0 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Wzz PF02706.15 gi|325968085|ref|YP_004244277.1| - 0.28 11.5 1.3 0.86 9.9 1.3 1.8 1 0 0 1 1 1 0 Chain length determinant protein Fer4 PF00037.27 gi|325968086|ref|YP_004244278.1| - 5.3e-19 67.2 38.3 1e-07 31.5 3.8 4.9 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325968086|ref|YP_004244278.1| - 5.9e-18 65.2 28.5 8.8e-07 29.4 11.9 3.8 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325968086|ref|YP_004244278.1| - 3.3e-15 56.0 27.2 5.3e-08 32.9 6.4 4.3 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325968086|ref|YP_004244278.1| - 4.9e-15 54.9 45.2 2.6e-06 27.3 2.2 5.6 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|325968086|ref|YP_004244278.1| - 4.3e-13 49.1 33.4 1e-06 28.8 9.5 4.4 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968086|ref|YP_004244278.1| - 3.7e-12 46.2 35.3 1.8e-07 31.2 8.1 3.9 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325968086|ref|YP_004244278.1| - 6.4e-12 46.2 26.8 0.0018 19.2 0.6 5.0 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|325968086|ref|YP_004244278.1| - 3.9e-09 36.0 36.0 0.0001 22.2 3.0 5.5 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|325968086|ref|YP_004244278.1| - 2.9e-07 30.8 23.2 0.0064 16.9 0.6 4.6 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325968086|ref|YP_004244278.1| - 0.00021 22.0 49.2 0.027 15.4 4.5 5.4 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_15 PF13459.6 gi|325968086|ref|YP_004244278.1| - 0.007 17.1 26.1 0.16 12.7 0.4 4.5 3 1 1 4 4 4 3 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|325968086|ref|YP_004244278.1| - 0.01 16.7 26.3 0.048 14.5 1.1 4.7 4 1 3 7 7 6 1 4Fe-4S dicluster domain FlpD PF02662.16 gi|325968086|ref|YP_004244278.1| - 0.014 15.4 0.7 0.049 13.6 0.0 2.1 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_4 PF12800.7 gi|325968086|ref|YP_004244278.1| - 0.016 15.6 3.2 0.016 15.6 3.2 5.6 7 0 0 7 7 4 0 4Fe-4S binding domain ETF_QO PF05187.13 gi|325968086|ref|YP_004244278.1| - 0.017 15.3 8.8 0.71 10.0 0.9 2.4 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|325968086|ref|YP_004244278.1| - 0.02 15.4 32.3 0.25 11.9 1.6 5.2 4 1 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|325968086|ref|YP_004244278.1| - 0.023 15.3 39.9 16 6.1 11.4 5.3 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|325968086|ref|YP_004244278.1| - 8.5 6.6 28.5 0.31 11.2 2.2 4.0 3 2 1 4 4 4 0 4Fe-4S dicluster domain Nitrate_red_del PF02613.15 gi|325968087|ref|YP_004244279.1| - 3.3e-13 49.8 0.1 6.6e-13 48.9 0.0 1.5 2 0 0 2 2 2 1 Nitrate reductase delta subunit Fer4_11 PF13247.6 gi|325968088|ref|YP_004244280.1| - 1e-20 73.7 7.3 1e-20 73.7 7.3 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968088|ref|YP_004244280.1| - 1.5e-14 54.3 20.6 5.7e-07 30.0 7.4 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968088|ref|YP_004244280.1| - 6.4e-13 47.9 30.5 2e-06 27.4 6.0 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|325968088|ref|YP_004244280.1| - 1.3e-11 44.4 21.2 1e-07 32.0 9.7 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325968088|ref|YP_004244280.1| - 6.1e-11 41.9 31.0 1.3e-05 25.1 4.4 4.5 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325968088|ref|YP_004244280.1| - 2.1e-09 37.4 23.6 3.9e-06 26.9 10.4 3.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325968088|ref|YP_004244280.1| - 7.2e-08 33.3 17.9 0.012 16.6 0.6 4.2 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|325968088|ref|YP_004244280.1| - 5.2e-07 29.4 34.7 8.2e-05 22.5 3.3 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|325968088|ref|YP_004244280.1| - 8.8e-06 26.3 35.7 0.065 14.2 3.8 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325968088|ref|YP_004244280.1| - 1.3e-05 25.3 35.7 0.0031 17.9 3.6 4.5 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968088|ref|YP_004244280.1| - 0.0016 18.5 9.6 0.0016 18.5 9.6 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968088|ref|YP_004244280.1| - 0.0018 18.8 24.2 0.13 12.8 3.7 4.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|325968088|ref|YP_004244280.1| - 0.0071 16.8 28.6 1.3 9.6 13.7 3.8 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|325968088|ref|YP_004244280.1| - 6.4 7.7 19.6 3.2 8.7 1.6 3.4 2 1 1 3 3 3 0 4Fe-4S dicluster domain DoxD PF04173.13 gi|325968089|ref|YP_004244281.1| - 2.6e-49 167.3 3.3 2.9e-49 167.2 3.3 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|325968089|ref|YP_004244281.1| - 0.0089 16.6 5.6 0.0089 16.6 5.6 1.8 2 0 0 2 2 2 1 DoxX DoxA PF07680.11 gi|325968090|ref|YP_004244282.1| - 4e-39 133.5 0.0 4.8e-39 133.3 0.0 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA PaREP1 PF05942.11 gi|325968091|ref|YP_004244283.1| - 3.2e-27 94.8 0.4 3.9e-27 94.5 0.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Mg296 PF09644.10 gi|325968091|ref|YP_004244283.1| - 0.13 12.4 0.1 0.65 10.1 0.0 1.9 1 1 1 2 2 2 0 Mg296 protein Ntox28 PF15605.6 gi|325968091|ref|YP_004244283.1| - 0.14 12.4 0.0 0.67 10.2 0.0 1.9 1 1 0 1 1 1 0 Bacterial toxin 28 Lysozyme_like PF13702.6 gi|325968091|ref|YP_004244283.1| - 0.2 11.4 0.0 0.69 9.6 0.0 1.7 1 1 1 2 2 2 0 Lysozyme-like TatC PF00902.18 gi|325968092|ref|YP_004244284.1| - 2.8e-44 151.4 23.9 3.9e-44 151.0 23.9 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DUF3040 PF11239.8 gi|325968092|ref|YP_004244284.1| - 0.76 10.1 3.8 4.4 7.7 0.0 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) HTH_1 PF00126.27 gi|325968093|ref|YP_004244285.1| - 2e-14 53.3 0.0 3.5e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.6 gi|325968093|ref|YP_004244285.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_23 PF13384.6 gi|325968093|ref|YP_004244285.1| - 0.0018 18.0 0.0 0.0041 16.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|325968093|ref|YP_004244285.1| - 0.044 13.7 0.0 0.086 12.8 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.6 gi|325968093|ref|YP_004244285.1| - 0.05 13.6 0.0 0.096 12.7 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix Rho_N PF07498.12 gi|325968094|ref|YP_004244286.1| - 9.5e-05 22.2 0.1 0.00094 19.1 0.1 2.1 2 0 0 2 2 2 1 Rho termination factor, N-terminal domain MttA_Hcf106 PF02416.16 gi|325968095|ref|YP_004244287.1| - 1.2e-13 50.1 0.4 5.3e-13 48.1 0.4 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family Rho_N PF07498.12 gi|325968095|ref|YP_004244287.1| - 0.00048 20.0 0.1 0.095 12.6 0.0 2.4 2 0 0 2 2 2 2 Rho termination factor, N-terminal domain Hom_end PF05204.14 gi|325968095|ref|YP_004244287.1| - 0.0014 18.7 0.1 2.8 8.1 0.0 2.9 1 1 2 3 3 3 2 Homing endonuclease SAP PF02037.27 gi|325968095|ref|YP_004244287.1| - 0.022 14.5 0.2 0.51 10.1 0.0 2.2 2 0 0 2 2 2 0 SAP domain CcdA PF07362.12 gi|325968095|ref|YP_004244287.1| - 0.077 13.4 0.0 3.1 8.3 0.0 2.3 1 1 0 2 2 2 0 Post-segregation antitoxin CcdA HTH_Tnp_1 PF01527.20 gi|325968095|ref|YP_004244287.1| - 0.11 12.9 0.0 2.7 8.4 0.0 2.3 2 0 0 2 2 2 0 Transposase AhpC-TSA PF00578.21 gi|325968097|ref|YP_004244289.1| - 2.3e-27 95.4 0.0 4.9e-27 94.3 0.0 1.5 2 0 0 2 2 2 1 AhpC/TSA family Redoxin PF08534.10 gi|325968097|ref|YP_004244289.1| - 1.6e-14 53.8 0.0 2.2e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|325968097|ref|YP_004244289.1| - 2.8e-10 39.9 0.0 4.8e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF126 PF01989.16 gi|325968098|ref|YP_004244290.1| - 5.7e-25 86.9 0.8 8.7e-25 86.3 0.8 1.3 1 0 0 1 1 1 1 Aconitase X swivel domain AGOG PF09171.10 gi|325968099|ref|YP_004244291.1| - 2.1e-72 243.5 0.0 2.4e-72 243.2 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase Peptidase_M50 PF02163.22 gi|325968101|ref|YP_004244293.1| - 3.3e-19 69.2 6.7 7.1e-19 68.0 6.7 1.6 1 0 0 1 1 1 1 Peptidase family M50 PDZ_1 PF12812.7 gi|325968101|ref|YP_004244293.1| - 0.038 14.0 0.1 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 PDZ-like domain DUF2208 PF09973.9 gi|325968103|ref|YP_004244295.1| - 2.4e-23 83.0 21.3 9.2e-23 81.1 21.3 1.7 1 1 0 1 1 1 1 Predicted membrane protein (DUF2208) CitMHS PF03600.16 gi|325968103|ref|YP_004244295.1| - 0.00043 19.6 0.1 0.003 16.8 0.1 1.9 1 1 0 1 1 1 1 Citrate transporter Phage_holin_3_6 PF07332.11 gi|325968103|ref|YP_004244295.1| - 0.002 18.2 1.9 0.67 10.0 0.2 2.3 2 0 0 2 2 2 2 Putative Actinobacterial Holin-X, holin superfamily III RseC_MucC PF04246.12 gi|325968103|ref|YP_004244295.1| - 0.0048 16.9 0.1 0.0048 16.9 0.1 2.4 3 0 0 3 3 3 1 Positive regulator of sigma(E), RseC/MucC DUF3278 PF11683.8 gi|325968103|ref|YP_004244295.1| - 0.022 14.9 15.9 0.043 13.9 0.8 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF3278) HemY_N PF07219.13 gi|325968103|ref|YP_004244295.1| - 0.35 11.1 0.0 0.35 11.1 0.0 3.1 2 1 1 3 3 3 0 HemY protein N-terminus DUF2207 PF09972.9 gi|325968103|ref|YP_004244295.1| - 0.47 9.2 16.7 0.12 11.1 5.1 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Ribosomal_60s PF00428.19 gi|325968104|ref|YP_004244296.1| - 2.5e-16 60.0 23.4 5.5e-16 58.9 23.4 1.5 1 1 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|325968104|ref|YP_004244296.1| - 0.012 15.9 0.0 0.019 15.3 0.0 1.3 1 0 0 1 1 1 0 EF-hand domain DSBA PF01323.20 gi|325968104|ref|YP_004244296.1| - 0.039 13.7 0.9 0.049 13.4 0.9 1.1 1 0 0 1 1 1 0 DSBA-like thioredoxin domain PepSY_2 PF13670.6 gi|325968104|ref|YP_004244296.1| - 0.041 13.9 8.0 0.77 9.8 0.0 2.2 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DUF4820 PF16091.5 gi|325968104|ref|YP_004244296.1| - 1 8.7 3.1 19 4.5 3.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4820) Abhydrolase_3 PF07859.13 gi|325968105|ref|YP_004244297.1| - 0.18 11.7 0.0 0.21 11.4 0.0 1.1 1 0 0 1 1 1 0 alpha/beta hydrolase fold ECH_1 PF00378.20 gi|325968106|ref|YP_004244298.1| - 4.2e-55 186.8 0.0 5.3e-55 186.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|325968106|ref|YP_004244298.1| - 5.8e-30 104.9 0.0 6.4e-27 94.9 0.0 2.2 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase AFOR_C PF01314.18 gi|325968107|ref|YP_004244299.1| - 2.5e-99 332.9 0.0 3.2e-99 332.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|325968107|ref|YP_004244299.1| - 2.8e-70 236.2 0.0 4.5e-70 235.5 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Ubie_methyltran PF01209.18 gi|325968108|ref|YP_004244300.1| - 6e-13 48.7 0.0 8.3e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|325968108|ref|YP_004244300.1| - 7.3e-07 29.8 0.0 1.2e-06 29.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968108|ref|YP_004244300.1| - 0.00054 20.6 0.0 0.00087 19.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325968108|ref|YP_004244300.1| - 0.001 19.0 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325968108|ref|YP_004244300.1| - 0.0077 16.0 0.0 0.065 13.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PTH2 PF01981.16 gi|325968109|ref|YP_004244301.1| - 1.7e-41 141.2 0.0 1.9e-41 141.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 FAD_oxidored PF12831.7 gi|325968110|ref|YP_004244302.1| - 5.2e-07 29.4 0.4 7.1e-06 25.6 0.4 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|325968110|ref|YP_004244302.1| - 1.1e-06 28.1 2.6 0.00011 21.5 1.1 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|325968110|ref|YP_004244302.1| - 1e-05 24.9 1.4 0.0013 18.0 0.5 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325968110|ref|YP_004244302.1| - 1.2e-05 25.5 0.6 2.9e-05 24.2 0.6 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|325968110|ref|YP_004244302.1| - 3.9e-05 23.1 1.3 6.3e-05 22.4 1.3 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|325968110|ref|YP_004244302.1| - 4.9e-05 22.2 0.8 8.4e-05 21.4 0.6 1.4 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|325968110|ref|YP_004244302.1| - 0.0001 21.5 9.5 0.00053 19.2 1.1 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|325968110|ref|YP_004244302.1| - 0.00011 21.6 1.0 0.00011 21.6 1.0 2.5 3 0 0 3 3 2 1 Thi4 family DAO PF01266.24 gi|325968110|ref|YP_004244302.1| - 0.0011 18.6 8.4 0.096 12.2 8.4 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|325968110|ref|YP_004244302.1| - 0.021 13.7 1.4 1.9 7.2 0.2 2.2 2 0 0 2 2 2 0 Tryptophan halogenase UDPG_MGDP_dh_N PF03721.14 gi|325968110|ref|YP_004244302.1| - 0.024 14.2 2.1 0.037 13.6 2.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|325968110|ref|YP_004244302.1| - 0.089 11.8 4.1 1.4 7.8 1.4 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|325968110|ref|YP_004244302.1| - 0.12 11.6 0.4 0.19 11.0 0.4 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ROK PF00480.20 gi|325968111|ref|YP_004244303.1| - 5.3e-60 203.4 0.6 6e-60 203.2 0.6 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|325968111|ref|YP_004244303.1| - 0.086 12.3 1.2 0.55 9.7 0.4 2.3 2 1 0 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|325968111|ref|YP_004244303.1| - 0.14 11.7 0.1 0.22 11.1 0.1 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Cas_Cas4 PF01930.17 gi|325968112|ref|YP_004244304.1| - 5.6e-10 39.6 0.3 8.6e-10 39.0 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|325968112|ref|YP_004244304.1| - 0.00032 20.7 0.3 0.00072 19.5 0.1 1.7 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|325968112|ref|YP_004244304.1| - 0.0059 16.6 0.0 0.021 14.8 0.0 1.8 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_9 PF08011.11 gi|325968112|ref|YP_004244304.1| - 0.067 13.1 0.2 0.17 11.8 0.1 1.7 1 1 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Usp PF00582.26 gi|325968113|ref|YP_004244305.1| - 3.5e-35 121.6 0.1 4.2e-35 121.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|325968113|ref|YP_004244305.1| - 0.008 16.9 0.2 0.011 16.4 0.2 1.3 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase AP_endonuc_2 PF01261.24 gi|325968113|ref|YP_004244305.1| - 0.044 13.2 0.0 2.1 7.7 0.0 2.2 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel AAA_26 PF13500.6 gi|325968113|ref|YP_004244305.1| - 0.07 12.9 0.2 0.11 12.3 0.0 1.5 2 0 0 2 2 2 0 AAA domain MS_channel PF00924.18 gi|325968114|ref|YP_004244306.1| - 1.9e-08 34.1 0.3 1.9e-08 34.1 0.3 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel BCD PF15461.6 gi|325968114|ref|YP_004244306.1| - 0.0022 17.6 3.6 0.0028 17.2 3.6 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase YwiC PF14256.6 gi|325968114|ref|YP_004244306.1| - 0.17 12.2 4.7 0.28 11.5 4.7 1.2 1 0 0 1 1 1 0 YwiC-like protein DUF3810 PF12725.7 gi|325968114|ref|YP_004244306.1| - 1.5 8.1 5.6 2.8 7.2 5.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3810) TrkA_N PF02254.18 gi|325968115|ref|YP_004244307.1| - 1.1e-23 83.6 0.3 1.8e-23 83.0 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|325968115|ref|YP_004244307.1| - 0.00031 21.1 0.1 0.00053 20.4 0.1 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_C PF02080.21 gi|325968115|ref|YP_004244307.1| - 0.00036 20.3 0.2 0.00079 19.2 0.2 1.6 1 0 0 1 1 1 1 TrkA-C domain PixA PF12306.8 gi|325968115|ref|YP_004244307.1| - 0.044 14.0 0.0 0.086 13.0 0.0 1.5 1 1 0 1 1 1 0 Inclusion body protein DUF577 PF04510.12 gi|325968115|ref|YP_004244307.1| - 0.09 12.7 0.1 0.3 11.0 0.0 1.9 3 0 0 3 3 3 0 Family of unknown function (DUF577) dCMP_cyt_deam_1 PF00383.23 gi|325968116|ref|YP_004244308.1| - 6.3e-15 54.9 0.0 7.6e-15 54.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|325968116|ref|YP_004244308.1| - 1.2e-06 28.7 0.0 1.7e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|325968116|ref|YP_004244308.1| - 0.0031 17.2 1.0 0.9 9.1 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF1610 PF07754.11 gi|325968117|ref|YP_004244309.1| - 4.2e-12 45.8 4.0 4.2e-12 45.8 4.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) DZR PF12773.7 gi|325968117|ref|YP_004244309.1| - 0.00045 20.2 11.6 0.035 14.1 11.6 2.1 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|325968117|ref|YP_004244309.1| - 0.0018 17.9 19.9 0.0018 17.9 4.9 3.5 2 2 0 2 2 2 1 zinc-ribbon domain Rhodanese_C PF12368.8 gi|325968117|ref|YP_004244309.1| - 0.0018 18.6 3.6 0.0022 18.3 3.6 1.2 1 0 0 1 1 1 1 Rhodanase C-terminal zf-CHY PF05495.12 gi|325968117|ref|YP_004244309.1| - 0.0028 18.1 7.1 0.12 12.9 8.3 2.0 1 1 1 2 2 2 2 CHY zinc finger C1_2 PF03107.16 gi|325968117|ref|YP_004244309.1| - 0.004 17.4 9.5 0.03 14.7 2.0 2.2 1 1 1 2 2 2 2 C1 domain zf_UBZ PF18439.1 gi|325968117|ref|YP_004244309.1| - 0.007 15.9 13.0 0.036 13.7 0.1 3.9 3 1 1 4 4 4 2 Ubiquitin-Binding Zinc Finger HscB_4_cys PF18256.1 gi|325968117|ref|YP_004244309.1| - 0.0079 16.0 1.7 0.0079 16.0 1.7 3.0 1 1 2 3 3 3 1 Co-chaperone HscB tetracysteine metal binding motif Zn_Tnp_IS91 PF14319.6 gi|325968117|ref|YP_004244309.1| - 0.011 15.8 0.3 0.011 15.8 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-binding domain PhnA_Zn_Ribbon PF08274.12 gi|325968117|ref|YP_004244309.1| - 0.013 15.5 11.6 0.45 10.5 0.1 4.0 2 1 2 4 4 4 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|325968117|ref|YP_004244309.1| - 0.015 15.3 10.5 0.017 15.2 0.6 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|325968117|ref|YP_004244309.1| - 0.045 13.4 2.5 0.045 13.4 2.5 3.4 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-RING_5 PF14634.6 gi|325968117|ref|YP_004244309.1| - 0.05 13.6 11.5 2.8 8.0 11.5 2.6 1 1 0 1 1 1 0 zinc-RING finger domain zf_C2H2_13 PF18508.1 gi|325968117|ref|YP_004244309.1| - 0.054 13.1 1.0 0.054 13.1 1.0 2.8 2 2 1 3 3 3 0 Zinc finger domain OrfB_Zn_ribbon PF07282.11 gi|325968117|ref|YP_004244309.1| - 0.06 13.3 1.1 0.06 13.3 1.1 2.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|325968117|ref|YP_004244309.1| - 0.074 12.5 18.6 0.21 11.0 0.2 3.7 4 0 0 4 4 4 0 zinc-ribbon domain zf-MYND PF01753.18 gi|325968117|ref|YP_004244309.1| - 0.078 13.1 7.0 0.85 9.8 0.2 2.2 1 1 0 2 2 2 0 MYND finger zf-H2C2_2 PF13465.6 gi|325968117|ref|YP_004244309.1| - 0.079 13.4 15.5 0.89 10.1 1.1 4.1 3 1 1 4 4 4 0 Zinc-finger double domain Zn-ribbon_8 PF09723.10 gi|325968117|ref|YP_004244309.1| - 0.089 12.9 1.9 0.089 12.9 1.9 3.2 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|325968117|ref|YP_004244309.1| - 0.16 11.9 22.5 3.4 7.7 14.7 3.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-UBP PF02148.19 gi|325968117|ref|YP_004244309.1| - 0.17 12.2 6.0 1.9 8.9 0.7 2.5 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Desulfoferrod_N PF06397.12 gi|325968117|ref|YP_004244309.1| - 0.24 11.1 12.4 0.92 9.2 0.3 3.6 2 1 2 4 4 4 0 Desulfoferrodoxin, N-terminal domain NRDD PF13597.6 gi|325968117|ref|YP_004244309.1| - 0.43 9.3 11.3 0.94 8.2 5.7 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase NMD3 PF04981.13 gi|325968117|ref|YP_004244309.1| - 0.51 9.8 7.7 0.61 9.5 7.7 1.0 1 0 0 1 1 1 0 NMD3 family Ribosomal_L32p PF01783.23 gi|325968117|ref|YP_004244309.1| - 0.52 10.6 10.3 0.39 11.0 5.3 2.7 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-TFIIB PF13453.6 gi|325968117|ref|YP_004244309.1| - 0.63 9.4 13.4 2.8 7.3 8.0 3.3 2 1 0 2 2 2 0 Transcription factor zinc-finger NOB1_Zn_bind PF08772.11 gi|325968117|ref|YP_004244309.1| - 1.3 9.2 8.9 0.17 12.1 3.5 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-C2HC5 PF06221.13 gi|325968117|ref|YP_004244309.1| - 1.4 9.0 10.7 81 3.3 10.7 2.5 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-C2H2 PF00096.26 gi|325968117|ref|YP_004244309.1| - 2 9.1 16.6 11 6.7 0.6 4.1 3 1 1 4 4 4 0 Zinc finger, C2H2 type PolC_DP2 PF03833.13 gi|325968117|ref|YP_004244309.1| - 2.3 5.9 4.9 2.6 5.8 4.9 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 A2L_zn_ribbon PF08792.10 gi|325968117|ref|YP_004244309.1| - 2.6 7.9 11.6 1.5 8.7 1.2 3.2 1 1 2 3 3 3 0 A2L zinc ribbon domain DUF2321 PF10083.9 gi|325968117|ref|YP_004244309.1| - 3.3 7.3 5.8 1 9.0 1.8 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) TF_Zn_Ribbon PF08271.12 gi|325968117|ref|YP_004244309.1| - 3.4 7.2 16.5 1.9 8.1 4.8 3.1 2 1 1 3 3 3 0 TFIIB zinc-binding zf-C2H2_4 PF13894.6 gi|325968117|ref|YP_004244309.1| - 3.6 8.7 14.9 14 6.8 0.4 4.1 4 0 0 4 4 4 0 C2H2-type zinc finger zf-dskA_traR PF01258.17 gi|325968117|ref|YP_004244309.1| - 7.7 6.5 13.2 1 9.4 0.2 3.7 2 2 1 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Rubredoxin_2 PF18073.1 gi|325968117|ref|YP_004244309.1| - 8.8 6.1 21.0 9.8 6.0 0.3 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain zf-FPG_IleRS PF06827.14 gi|325968117|ref|YP_004244309.1| - 9.1 6.2 20.3 0.2 11.5 2.0 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS SpoIIM PF01944.17 gi|325968119|ref|YP_004244311.1| - 2.9e-11 43.6 24.8 8.8e-11 42.1 24.1 1.8 1 1 1 2 2 2 1 Stage II sporulation protein M ATP-synt_D PF01813.17 gi|325968120|ref|YP_004244312.1| - 5.7e-30 104.6 0.9 6.3e-30 104.5 0.9 1.0 1 0 0 1 1 1 1 ATP synthase subunit D MMR_HSR1 PF01926.23 gi|325968121|ref|YP_004244313.1| - 5.7e-19 68.3 0.1 1.2e-13 51.1 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|325968121|ref|YP_004244313.1| - 5.1e-10 39.1 0.3 2.5e-06 27.1 0.1 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|325968121|ref|YP_004244313.1| - 2e-09 37.6 0.0 4.7e-09 36.4 0.0 1.6 1 1 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|325968121|ref|YP_004244313.1| - 3.8e-07 30.3 0.2 0.024 14.7 0.0 3.1 3 0 0 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|325968121|ref|YP_004244313.1| - 4.7e-07 29.5 0.1 3.8e-05 23.3 0.0 3.2 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|325968121|ref|YP_004244313.1| - 6.8e-05 22.4 0.1 0.018 14.5 0.0 2.3 1 1 0 2 2 2 2 ADP-ribosylation factor family cobW PF02492.19 gi|325968121|ref|YP_004244313.1| - 0.0014 18.3 0.0 0.019 14.5 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AIG1 PF04548.16 gi|325968121|ref|YP_004244313.1| - 0.0016 17.8 0.0 0.021 14.2 0.0 2.1 2 0 0 2 2 2 1 AIG1 family MMR_HSR1_Xtn PF16897.5 gi|325968121|ref|YP_004244313.1| - 0.002 18.1 0.0 0.0038 17.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|325968121|ref|YP_004244313.1| - 0.04 14.5 0.0 0.095 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|325968121|ref|YP_004244313.1| - 0.059 12.3 0.1 0.29 10.1 0.0 2.0 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|325968121|ref|YP_004244313.1| - 0.086 12.7 0.3 12 5.8 0.1 2.3 2 0 0 2 2 2 0 NTPase Roc PF08477.13 gi|325968121|ref|YP_004244313.1| - 0.13 12.5 0.0 1.9 8.8 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|325968121|ref|YP_004244313.1| - 0.19 12.0 0.0 27 5.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|325968121|ref|YP_004244313.1| - 0.22 11.2 0.1 19 4.9 0.0 2.9 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein Transposon_TraM PF12508.8 gi|325968122|ref|YP_004244314.1| - 0.074 12.7 0.1 0.66 9.6 0.0 2.0 2 0 0 2 2 2 0 Conjugative transposon, TraM MLANA PF14991.6 gi|325968123|ref|YP_004244315.1| - 0.18 12.1 0.1 0.18 12.1 0.1 2.0 2 0 0 2 2 2 0 Protein melan-A Mrr_cat PF04471.12 gi|325968125|ref|YP_004244317.1| - 0.0094 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Hjc PF01870.18 gi|325968125|ref|YP_004244317.1| - 0.013 15.4 0.1 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|325968125|ref|YP_004244317.1| - 0.11 12.9 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 Nuclease-related domain Aldedh PF00171.22 gi|325968126|ref|YP_004244318.1| - 9.1e-135 449.7 0.0 1.1e-134 449.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family CBS PF00571.28 gi|325968127|ref|YP_004244319.1| - 7.6e-41 138.4 12.3 3.5e-13 49.8 0.2 4.1 4 0 0 4 4 4 4 CBS domain PTS_IIA PF02255.16 gi|325968127|ref|YP_004244319.1| - 0.3 11.1 1.9 1.8 8.6 0.2 2.8 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit Fumerase_C PF05683.12 gi|325968128|ref|YP_004244320.1| - 1.4e-50 171.5 0.1 1.6e-50 171.3 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|325968129|ref|YP_004244321.1| - 4e-81 272.4 0.0 4.6e-81 272.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) ATPgrasp_N PF18130.1 gi|325968129|ref|YP_004244321.1| - 0.1 13.2 0.1 0.38 11.3 0.1 1.9 2 0 0 2 2 2 0 ATP-grasp N-terminal domain TauE PF01925.19 gi|325968130|ref|YP_004244322.1| - 1.7e-28 99.8 27.6 2.1e-28 99.6 27.6 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE ADH_N PF08240.12 gi|325968131|ref|YP_004244323.1| - 1.1e-27 96.0 0.9 3.8e-27 94.3 0.4 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|325968131|ref|YP_004244323.1| - 1.9e-23 82.9 0.3 3.1e-23 82.2 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|325968131|ref|YP_004244323.1| - 4.2e-12 47.2 0.0 8e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|325968131|ref|YP_004244323.1| - 0.0014 18.4 0.1 0.0019 18.0 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Epimerase PF01370.21 gi|325968131|ref|YP_004244323.1| - 0.0062 16.0 0.2 0.0085 15.6 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_N_2 PF16884.5 gi|325968131|ref|YP_004244323.1| - 0.008 16.1 0.0 0.04 13.8 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of oxidoreductase NmrA PF05368.13 gi|325968131|ref|YP_004244323.1| - 0.009 15.6 1.1 0.013 15.1 0.4 1.6 2 0 0 2 2 2 1 NmrA-like family DUF927 PF06048.11 gi|325968131|ref|YP_004244323.1| - 0.015 14.9 0.2 0.13 11.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF927) Semialdhyde_dh PF01118.24 gi|325968131|ref|YP_004244323.1| - 0.045 14.2 0.2 9.7 6.7 0.0 2.4 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|325968131|ref|YP_004244323.1| - 0.076 12.9 0.4 0.12 12.2 0.4 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Ribosomal_L19e PF01280.20 gi|325968132|ref|YP_004244324.1| - 4.3e-47 159.8 5.3 4.8e-47 159.6 5.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L5e PF17144.4 gi|325968133|ref|YP_004244325.1| - 8.3e-37 126.7 4.1 1e-23 84.1 2.3 2.6 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|325968133|ref|YP_004244325.1| - 3.8e-11 43.8 1.2 8e-11 42.7 1.2 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|325968133|ref|YP_004244325.1| - 3.6e-09 37.0 0.1 5.8e-09 36.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Sugar_tr PF00083.24 gi|325968134|ref|YP_004244326.1| - 2e-22 79.7 33.1 1.6e-21 76.8 32.9 2.2 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325968134|ref|YP_004244326.1| - 7.5e-19 67.9 44.6 7.5e-19 67.9 44.6 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily EMC3_TMCO1 PF01956.16 gi|325968134|ref|YP_004244326.1| - 0.11 12.2 0.0 0.11 12.2 0.0 3.0 3 2 0 3 3 3 0 Integral membrane protein EMC3/TMCO1-like EamA PF00892.20 gi|325968135|ref|YP_004244327.1| - 2.2e-07 31.2 34.2 0.00016 21.8 13.8 2.3 2 0 0 2 2 2 2 EamA-like transporter family tRNA-synt_2 PF00152.20 gi|325968136|ref|YP_004244328.1| - 5.3e-82 275.4 0.1 6.3e-82 275.2 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|325968136|ref|YP_004244328.1| - 1.4e-09 37.8 0.4 2.8e-09 36.8 0.4 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|325968136|ref|YP_004244328.1| - 0.0043 16.6 0.4 0.36 10.3 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) B12-binding_2 PF02607.17 gi|325968136|ref|YP_004244328.1| - 0.008 16.6 0.1 0.024 15.1 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain HET-S PF17108.5 gi|325968136|ref|YP_004244328.1| - 0.25 11.1 0.4 0.42 10.4 0.4 1.3 1 0 0 1 1 1 0 N-terminal small S protein of HET, non-prionic KH_5 PF13184.6 gi|325968137|ref|YP_004244329.1| - 3.6e-05 23.7 0.3 0.00049 20.1 0.2 2.3 2 0 0 2 2 2 1 NusA-like KH domain ABC_tran PF00005.27 gi|325968138|ref|YP_004244330.1| - 2.2e-25 89.7 0.0 4.7e-25 88.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325968138|ref|YP_004244330.1| - 4.8e-13 49.6 1.1 1.5e-08 34.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|325968138|ref|YP_004244330.1| - 0.00043 20.9 0.2 0.0011 19.6 0.2 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA PF00004.29 gi|325968138|ref|YP_004244330.1| - 0.0012 19.3 0.0 0.0098 16.3 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|325968138|ref|YP_004244330.1| - 0.003 17.5 0.0 0.0044 17.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|325968138|ref|YP_004244330.1| - 0.006 16.3 0.1 0.3 10.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|325968138|ref|YP_004244330.1| - 0.0068 16.1 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|325968138|ref|YP_004244330.1| - 0.0072 16.1 0.1 1.3 8.6 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_5 PF07728.14 gi|325968138|ref|YP_004244330.1| - 0.0073 16.3 0.1 0.022 14.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MukB PF04310.12 gi|325968138|ref|YP_004244330.1| - 0.012 15.5 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal SRP54 PF00448.22 gi|325968138|ref|YP_004244330.1| - 0.012 15.2 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|325968138|ref|YP_004244330.1| - 0.016 14.5 0.1 3.9 6.7 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_16 PF13191.6 gi|325968138|ref|YP_004244330.1| - 0.044 14.2 0.0 0.085 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|325968138|ref|YP_004244330.1| - 0.055 14.0 0.0 0.27 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|325968138|ref|YP_004244330.1| - 0.058 13.9 0.5 0.16 12.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|325968138|ref|YP_004244330.1| - 0.067 13.1 0.3 21 5.0 0.0 3.1 3 0 0 3 3 3 0 NTPase DUF1947 PF09183.10 gi|325968138|ref|YP_004244330.1| - 0.076 13.3 0.4 0.42 11.0 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1947) AAA_28 PF13521.6 gi|325968138|ref|YP_004244330.1| - 0.11 12.8 0.0 0.25 11.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain SMC_N PF02463.19 gi|325968138|ref|YP_004244330.1| - 0.11 11.9 0.0 14 5.0 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|325968138|ref|YP_004244330.1| - 0.15 11.8 0.1 0.57 9.9 0.0 1.9 3 0 0 3 3 2 0 AAA domain ABC2_membrane PF01061.24 gi|325968139|ref|YP_004244331.1| - 4.1e-12 46.0 25.4 4.1e-12 46.0 25.4 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|325968139|ref|YP_004244331.1| - 0.00033 19.9 30.9 0.00033 19.9 30.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein PPC PF04151.15 gi|325968141|ref|YP_004244333.1| - 0.64 11.2 11.3 80 4.4 11.3 3.7 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain Fer4_6 PF12837.7 gi|325968142|ref|YP_004244334.1| - 1.8e-07 30.9 12.7 0.0021 18.0 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325968142|ref|YP_004244334.1| - 4.5e-07 29.6 9.3 0.00031 20.7 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|325968142|ref|YP_004244334.1| - 3.8e-05 23.3 14.8 0.00021 21.0 4.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325968142|ref|YP_004244334.1| - 0.00043 20.8 3.1 0.17 12.5 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968142|ref|YP_004244334.1| - 0.002 18.2 13.1 0.14 12.3 2.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968142|ref|YP_004244334.1| - 0.0081 16.3 10.2 0.026 14.7 10.4 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325968142|ref|YP_004244334.1| - 0.29 11.3 14.9 0.43 10.8 13.1 2.2 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968142|ref|YP_004244334.1| - 0.49 11.0 5.9 5.5 7.6 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325968142|ref|YP_004244334.1| - 7.5 7.7 12.5 2.9 9.0 4.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain MFS_1 PF07690.16 gi|325968144|ref|YP_004244336.1| - 1.4e-27 96.6 48.9 3.9e-17 62.2 29.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|325968144|ref|YP_004244336.1| - 7.8e-06 25.0 5.7 7.8e-06 25.0 5.7 3.1 2 1 1 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|325968144|ref|YP_004244336.1| - 4.1e-05 22.2 19.4 4.1e-05 22.2 19.4 1.5 1 1 1 2 2 2 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|325968144|ref|YP_004244336.1| - 0.00035 19.6 33.0 0.006 15.5 33.0 2.1 1 1 0 1 1 1 1 MFS_1 like family S_100 PF01023.19 gi|325968144|ref|YP_004244336.1| - 0.047 13.4 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 S-100/ICaBP type calcium binding domain DUF2583 PF10762.9 gi|325968144|ref|YP_004244336.1| - 0.12 12.8 0.3 0.12 12.8 0.3 3.8 3 1 2 5 5 5 0 Protein of unknown function (DUF2583) GHMP_kinases_N PF00288.26 gi|325968145|ref|YP_004244337.1| - 1.9e-15 56.8 0.1 5.7e-14 52.1 0.0 2.5 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|325968145|ref|YP_004244337.1| - 7.2e-14 51.9 2.3 1.3e-13 51.1 0.5 2.2 3 0 0 3 3 3 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|325968145|ref|YP_004244337.1| - 4.5e-05 22.9 0.3 0.00019 20.9 0.3 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature SH3_19 PF18597.1 gi|325968145|ref|YP_004244337.1| - 0.048 13.5 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 Myosin X N-terminal SH3 domain Nif11 PF07862.11 gi|325968145|ref|YP_004244337.1| - 0.078 13.3 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Nif11 domain T2SSE PF00437.20 gi|325968146|ref|YP_004244338.1| - 1.2e-11 44.2 0.1 2.1e-11 43.4 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|325968146|ref|YP_004244338.1| - 2.7e-05 24.7 0.0 9.4e-05 23.0 0.0 1.9 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|325968146|ref|YP_004244338.1| - 0.00068 19.4 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|325968146|ref|YP_004244338.1| - 0.0007 20.0 0.0 0.0013 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|325968146|ref|YP_004244338.1| - 0.00074 19.7 0.0 0.026 14.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|325968146|ref|YP_004244338.1| - 0.00091 19.7 0.0 0.0019 18.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|325968146|ref|YP_004244338.1| - 0.0016 18.2 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|325968146|ref|YP_004244338.1| - 0.0036 17.3 0.0 0.0099 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|325968146|ref|YP_004244338.1| - 0.0038 17.2 0.0 0.0084 16.1 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Thymidylate_kin PF02223.17 gi|325968146|ref|YP_004244338.1| - 0.0051 16.5 0.0 0.015 15.0 0.0 1.9 2 0 0 2 2 1 1 Thymidylate kinase Rad17 PF03215.15 gi|325968146|ref|YP_004244338.1| - 0.0055 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|325968146|ref|YP_004244338.1| - 0.0055 16.3 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|325968146|ref|YP_004244338.1| - 0.0068 16.7 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|325968146|ref|YP_004244338.1| - 0.0081 15.9 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|325968146|ref|YP_004244338.1| - 0.0098 15.6 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|325968146|ref|YP_004244338.1| - 0.013 15.5 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|325968146|ref|YP_004244338.1| - 0.016 15.5 0.0 0.059 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain KH_1 PF00013.29 gi|325968146|ref|YP_004244338.1| - 0.017 14.9 0.7 0.058 13.2 0.1 2.3 2 0 0 2 2 2 0 KH domain Zeta_toxin PF06414.12 gi|325968146|ref|YP_004244338.1| - 0.018 14.4 0.0 0.031 13.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|325968146|ref|YP_004244338.1| - 0.019 15.4 0.0 0.1 13.0 0.0 2.1 2 0 0 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|325968146|ref|YP_004244338.1| - 0.025 14.3 0.1 0.066 12.9 0.1 1.7 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|325968146|ref|YP_004244338.1| - 0.025 14.0 0.0 0.18 11.2 0.0 2.2 2 0 0 2 2 2 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 gi|325968146|ref|YP_004244338.1| - 0.026 15.0 0.0 0.072 13.6 0.0 1.7 1 0 0 1 1 1 0 ABC transporter NTPase_1 PF03266.15 gi|325968146|ref|YP_004244338.1| - 0.03 14.2 0.0 0.071 13.0 0.0 1.6 1 0 0 1 1 1 0 NTPase SRP54 PF00448.22 gi|325968146|ref|YP_004244338.1| - 0.031 13.9 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|325968146|ref|YP_004244338.1| - 0.038 14.3 0.0 0.065 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|325968146|ref|YP_004244338.1| - 0.046 13.7 0.0 0.21 11.6 0.0 1.8 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|325968146|ref|YP_004244338.1| - 0.047 13.6 0.0 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.6 gi|325968146|ref|YP_004244338.1| - 0.062 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DnaB_C PF03796.15 gi|325968146|ref|YP_004244338.1| - 0.099 12.0 0.0 0.2 10.9 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_17 PF13207.6 gi|325968146|ref|YP_004244338.1| - 0.1 13.0 0.0 0.25 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|325968146|ref|YP_004244338.1| - 0.1 12.3 0.0 0.29 10.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|325968146|ref|YP_004244338.1| - 0.12 11.8 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.18 gi|325968146|ref|YP_004244338.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|325968146|ref|YP_004244338.1| - 0.19 11.5 0.0 0.39 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|325968147|ref|YP_004244339.1| - 6.5e-61 205.6 0.0 7.8e-61 205.4 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|325968147|ref|YP_004244339.1| - 1.7e-05 24.5 0.0 2.4e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325968147|ref|YP_004244339.1| - 0.0011 19.2 0.0 0.0022 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Caleosin PF05042.13 gi|325968147|ref|YP_004244339.1| - 0.0022 17.9 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 Caleosin related protein GvpD PF07088.11 gi|325968147|ref|YP_004244339.1| - 0.0026 16.5 0.4 0.083 11.5 0.1 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|325968147|ref|YP_004244339.1| - 0.0036 16.7 0.0 0.0052 16.1 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain Rad51 PF08423.11 gi|325968147|ref|YP_004244339.1| - 0.021 14.1 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Rad51 DUF2075 PF09848.9 gi|325968147|ref|YP_004244339.1| - 0.057 12.7 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|325968147|ref|YP_004244339.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|325968148|ref|YP_004244340.1| - 3.1e-63 213.0 0.2 4.7e-63 212.4 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|325968148|ref|YP_004244340.1| - 1.8e-25 89.5 2.9 1e-24 87.0 1.4 2.5 1 1 1 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|325968148|ref|YP_004244340.1| - 4.6e-12 46.0 0.2 4.6e-12 46.0 0.2 3.0 3 1 0 3 3 3 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|325968148|ref|YP_004244340.1| - 1.3e-07 32.0 0.2 9e-07 29.2 0.0 2.4 3 0 0 3 3 3 1 AAA domain CbiA PF01656.23 gi|325968148|ref|YP_004244340.1| - 3.6e-06 27.1 0.0 8.4e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|325968148|ref|YP_004244340.1| - 0.00042 20.1 0.1 0.0016 18.2 0.0 2.1 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|325968148|ref|YP_004244340.1| - 0.00042 19.9 0.9 0.0066 16.1 0.9 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|325968148|ref|YP_004244340.1| - 0.00091 19.3 0.0 0.0033 17.5 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|325968148|ref|YP_004244340.1| - 0.0013 18.9 0.0 0.0034 17.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain G-alpha PF00503.20 gi|325968148|ref|YP_004244340.1| - 0.0029 16.8 0.1 0.0078 15.4 0.1 1.9 1 1 0 1 1 1 1 G-protein alpha subunit MobB PF03205.14 gi|325968148|ref|YP_004244340.1| - 0.01 15.8 0.1 0.037 13.9 0.1 2.0 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.6 gi|325968148|ref|YP_004244340.1| - 0.013 15.5 2.3 0.021 14.8 0.2 2.4 2 1 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|325968148|ref|YP_004244340.1| - 0.013 15.5 1.3 0.33 10.9 0.3 2.8 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|325968148|ref|YP_004244340.1| - 0.014 14.9 0.8 1.1 8.7 0.4 2.8 2 1 0 2 2 1 0 AAA domain Zeta_toxin PF06414.12 gi|325968148|ref|YP_004244340.1| - 0.016 14.5 0.0 0.037 13.3 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|325968148|ref|YP_004244340.1| - 0.017 15.7 0.5 0.25 11.9 0.0 2.5 2 1 0 2 2 2 0 ABC transporter AAA_17 PF13207.6 gi|325968148|ref|YP_004244340.1| - 0.017 15.5 2.4 0.031 14.7 0.4 2.5 2 1 0 2 2 1 0 AAA domain Thymidylate_kin PF02223.17 gi|325968148|ref|YP_004244340.1| - 0.023 14.4 0.4 0.14 11.9 0.1 2.5 2 0 0 2 2 2 0 Thymidylate kinase AAA_5 PF07728.14 gi|325968148|ref|YP_004244340.1| - 0.029 14.4 0.1 0.097 12.7 0.1 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.9 gi|325968148|ref|YP_004244340.1| - 0.029 14.1 0.9 0.61 9.8 0.1 2.5 1 1 1 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MeaB PF03308.16 gi|325968148|ref|YP_004244340.1| - 0.069 12.1 0.3 0.64 8.9 0.0 2.3 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ParA PF10609.9 gi|325968148|ref|YP_004244340.1| - 0.077 12.4 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_16 PF13191.6 gi|325968148|ref|YP_004244340.1| - 0.085 13.2 0.0 0.28 11.6 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.20 gi|325968148|ref|YP_004244340.1| - 0.092 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase PFOR_II PF17147.4 gi|325968148|ref|YP_004244340.1| - 0.094 13.0 0.0 0.46 10.8 0.0 2.3 2 1 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II AAA_28 PF13521.6 gi|325968148|ref|YP_004244340.1| - 0.12 12.6 0.3 0.32 11.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain SLT_2 PF13406.6 gi|325968148|ref|YP_004244340.1| - 0.13 11.5 0.0 0.44 9.7 0.0 1.8 1 1 1 2 2 2 0 Transglycosylase SLT domain AAA PF00004.29 gi|325968148|ref|YP_004244340.1| - 0.14 12.5 1.1 0.8 10.1 0.2 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|325968148|ref|YP_004244340.1| - 0.19 11.8 1.8 0.36 10.9 0.3 2.2 2 1 0 2 2 2 0 AAA domain Phosphodiest PF01663.22 gi|325968149|ref|YP_004244341.1| - 1.8e-20 73.8 1.8 9.4e-19 68.2 1.8 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|325968149|ref|YP_004244341.1| - 5.4e-06 26.6 0.3 0.0065 16.6 0.2 2.2 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.18 gi|325968149|ref|YP_004244341.1| - 0.0014 18.0 0.0 0.0025 17.2 0.0 1.3 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase PF00884.23 gi|325968149|ref|YP_004244341.1| - 0.043 13.2 0.2 2.2 7.6 0.0 2.2 2 0 0 2 2 2 0 Sulfatase Nramp PF01566.18 gi|325968149|ref|YP_004244341.1| - 0.17 10.8 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein Trypsin_2 PF13365.6 gi|325968150|ref|YP_004244342.1| - 2.8e-32 112.7 0.2 4.1e-32 112.1 0.2 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|325968150|ref|YP_004244342.1| - 2.4e-16 60.2 0.0 4e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|325968150|ref|YP_004244342.1| - 2e-10 40.8 0.0 4.1e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|325968150|ref|YP_004244342.1| - 3.7e-10 39.5 0.9 7e-10 38.6 0.1 2.0 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|325968150|ref|YP_004244342.1| - 3.7e-08 33.6 0.1 1.4e-07 31.7 0.0 2.0 2 0 0 2 2 2 1 PDZ domain Peptidase_S32 PF05579.13 gi|325968150|ref|YP_004244342.1| - 0.0093 15.2 0.4 0.28 10.4 0.1 2.2 2 0 0 2 2 2 1 Equine arteritis virus serine endopeptidase S32 Tricorn_PDZ PF14685.6 gi|325968150|ref|YP_004244342.1| - 0.031 14.2 0.0 0.093 12.7 0.0 1.8 1 0 0 1 1 1 0 Tricorn protease PDZ domain Peptidase_S46 PF10459.9 gi|325968150|ref|YP_004244342.1| - 0.22 10.1 0.3 0.33 9.6 0.3 1.1 1 0 0 1 1 1 0 Peptidase S46 NMD3 PF04981.13 gi|325968151|ref|YP_004244343.1| - 4e-37 128.0 0.3 4e-37 128.0 0.3 1.6 2 0 0 2 2 2 1 NMD3 family DZR PF12773.7 gi|325968151|ref|YP_004244343.1| - 0.0011 18.9 0.8 0.15 12.1 0.4 2.6 2 1 0 2 2 2 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|325968151|ref|YP_004244343.1| - 0.0026 17.8 2.6 0.19 11.9 0.5 3.3 2 1 1 3 3 3 1 Zinc ribbon domain zf-ACC PF17848.1 gi|325968151|ref|YP_004244343.1| - 0.017 15.2 0.0 0.017 15.2 0.0 3.0 3 0 0 3 3 2 0 Acetyl-coA carboxylase zinc finger domain zf-RING_7 PF02591.15 gi|325968151|ref|YP_004244343.1| - 0.02 15.1 0.2 0.02 15.1 0.2 2.7 3 0 0 3 3 2 0 C4-type zinc ribbon domain Ribosomal_L37ae PF01780.19 gi|325968151|ref|YP_004244343.1| - 0.043 13.9 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-TFIIB PF13453.6 gi|325968151|ref|YP_004244343.1| - 0.051 12.9 1.4 1.7 8.0 0.2 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger baeRF_family7 PF18849.1 gi|325968151|ref|YP_004244343.1| - 0.11 12.7 0.2 0.18 12.0 0.2 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 7 baeRF_family6 PF18848.1 gi|325968151|ref|YP_004244343.1| - 0.13 12.6 0.1 0.22 11.9 0.1 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 6 zf-CCHC_5 PF14787.6 gi|325968151|ref|YP_004244343.1| - 0.15 11.8 8.8 0.52 10.1 0.1 3.3 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger zf-ribbon_3 PF13248.6 gi|325968151|ref|YP_004244343.1| - 0.24 10.9 0.1 0.24 10.9 0.1 3.1 4 0 0 4 4 4 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|325968151|ref|YP_004244343.1| - 0.64 10.0 5.0 4.9 7.2 0.3 3.1 2 1 1 3 3 3 0 zinc-ribbons Zn_ribbon_SprT PF17283.2 gi|325968151|ref|YP_004244343.1| - 1.1 9.3 9.7 0.42 10.6 2.2 2.9 3 1 0 3 3 3 0 SprT-like zinc ribbon domain Prok-RING_1 PF14446.6 gi|325968151|ref|YP_004244343.1| - 2.9 7.9 9.8 35 4.4 0.1 3.4 2 1 1 3 3 3 0 Prokaryotic RING finger family 1 zf-RING_4 PF14570.6 gi|325968151|ref|YP_004244343.1| - 6.3 6.7 7.7 27 4.7 0.0 3.0 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain eIF-1a PF01176.19 gi|325968152|ref|YP_004244344.1| - 1.9e-18 66.0 0.1 2.9e-18 65.4 0.1 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 ETF PF01012.21 gi|325968153|ref|YP_004244345.1| - 1.4e-43 148.9 0.0 1.8e-43 148.5 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|325968154|ref|YP_004244346.1| - 3.4e-31 108.5 0.0 5e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|325968154|ref|YP_004244346.1| - 9.5e-19 67.2 0.0 1.6e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain CCG PF02754.16 gi|325968155|ref|YP_004244347.1| - 6.1e-27 93.7 3.0 6.2e-17 61.6 0.0 2.8 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|325968155|ref|YP_004244347.1| - 1.3e-08 35.2 5.1 1.3e-08 35.2 5.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968155|ref|YP_004244347.1| - 1.3e-06 28.9 9.9 3.2e-06 27.6 7.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968155|ref|YP_004244347.1| - 2.3e-06 27.6 9.6 4.9e-06 26.6 7.8 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968155|ref|YP_004244347.1| - 4.8e-06 26.6 9.1 9.8e-06 25.6 7.4 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968155|ref|YP_004244347.1| - 1.8e-05 25.2 7.2 1.8e-05 25.2 7.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968155|ref|YP_004244347.1| - 0.0021 17.8 16.3 0.043 13.6 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325968155|ref|YP_004244347.1| - 0.023 15.2 7.0 1.4 9.6 0.7 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325968155|ref|YP_004244347.1| - 0.19 11.9 21.0 0.07 13.3 2.8 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|325968155|ref|YP_004244347.1| - 0.26 12.3 16.8 1.8 9.6 14.7 2.8 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|325968155|ref|YP_004244347.1| - 0.31 11.2 15.6 1.1 9.5 12.8 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325968155|ref|YP_004244347.1| - 1.3 9.2 11.6 1.5 9.0 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|325968155|ref|YP_004244347.1| - 2.6 8.3 12.9 0.2 11.9 1.9 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|325968155|ref|YP_004244347.1| - 6 6.7 8.6 1.4 8.7 0.9 2.4 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FlpD PF02662.16 gi|325968156|ref|YP_004244348.1| - 1.1e-36 125.5 0.1 4.4e-36 123.6 0.1 2.2 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Pyr_redox_2 PF07992.14 gi|325968156|ref|YP_004244348.1| - 5.3e-34 117.8 8.6 9e-07 28.4 0.0 5.3 4 1 1 5 5 5 5 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|325968156|ref|YP_004244348.1| - 3.2e-20 71.0 34.3 4.2e-09 35.9 1.5 4.7 4 0 0 4 4 4 3 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|325968156|ref|YP_004244348.1| - 6.3e-14 52.2 7.8 2.1e-07 30.7 0.9 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|325968156|ref|YP_004244348.1| - 8e-14 51.6 3.3 1.4e-06 28.4 0.1 3.6 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain Fer4_17 PF13534.6 gi|325968156|ref|YP_004244348.1| - 3e-12 46.9 16.5 0.0013 19.2 3.1 4.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain Pyr_redox PF00070.27 gi|325968156|ref|YP_004244348.1| - 3.2e-12 46.8 7.4 8.1e-07 29.5 0.1 4.4 4 1 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_6 PF12837.7 gi|325968156|ref|YP_004244348.1| - 8.2e-12 44.7 33.6 7e-06 25.9 1.3 4.9 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325968156|ref|YP_004244348.1| - 2.2e-11 44.2 34.4 1.6e-07 31.8 11.8 4.6 3 2 2 5 5 4 4 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|325968156|ref|YP_004244348.1| - 1.7e-10 40.6 11.3 3.3e-05 23.2 1.2 3.3 4 0 0 4 4 4 2 FAD binding domain HI0933_like PF03486.14 gi|325968156|ref|YP_004244348.1| - 1.7e-10 40.2 12.0 0.00047 19.0 1.4 3.4 2 1 1 3 3 3 3 HI0933-like protein Fer4_21 PF14697.6 gi|325968156|ref|YP_004244348.1| - 1.9e-10 40.7 25.7 3.7e-08 33.4 6.6 4.5 4 0 0 4 4 4 2 4Fe-4S dicluster domain GIDA PF01134.22 gi|325968156|ref|YP_004244348.1| - 3.1e-10 39.7 14.1 5e-06 25.9 0.1 4.8 5 0 0 5 5 5 2 Glucose inhibited division protein A Fer4_9 PF13187.6 gi|325968156|ref|YP_004244348.1| - 3.4e-10 39.9 31.8 2.2e-07 30.9 11.8 4.1 2 2 3 5 5 5 4 4Fe-4S dicluster domain DAO PF01266.24 gi|325968156|ref|YP_004244348.1| - 4e-10 39.8 11.1 0.00065 19.4 1.0 4.4 5 0 0 5 5 5 3 FAD dependent oxidoreductase Fer4_16 PF13484.6 gi|325968156|ref|YP_004244348.1| - 7.4e-10 39.6 30.0 0.0018 19.2 1.5 4.8 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|325968156|ref|YP_004244348.1| - 1.7e-08 34.4 34.2 8.7e-07 29.0 12.1 4.3 4 1 1 5 5 4 3 4Fe-4S dicluster domain FAD_binding_3 PF01494.19 gi|325968156|ref|YP_004244348.1| - 2.4e-08 33.6 5.4 9.4e-05 21.8 0.3 2.8 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|325968156|ref|YP_004244348.1| - 5.6e-08 32.4 6.3 0.04 13.2 1.7 4.9 4 1 1 5 5 5 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_2 PF12797.7 gi|325968156|ref|YP_004244348.1| - 1.3e-06 28.1 35.4 0.0013 18.7 1.0 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Amino_oxidase PF01593.24 gi|325968156|ref|YP_004244348.1| - 5.6e-06 25.9 5.1 0.012 15.0 0.1 3.2 4 0 0 4 4 3 2 Flavin containing amine oxidoreductase Fer4_8 PF13183.6 gi|325968156|ref|YP_004244348.1| - 7e-06 26.4 23.8 0.0098 16.3 0.3 4.5 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325968156|ref|YP_004244348.1| - 1.1e-05 25.5 35.8 0.016 15.6 3.1 4.8 4 0 0 4 4 4 3 4Fe-4S binding domain AlaDh_PNT_C PF01262.21 gi|325968156|ref|YP_004244348.1| - 1.2e-05 24.7 0.5 0.0015 17.9 0.0 2.7 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|325968156|ref|YP_004244348.1| - 4.2e-05 22.9 2.9 0.053 12.8 0.1 2.5 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.6 gi|325968156|ref|YP_004244348.1| - 0.00077 19.9 0.5 18 5.8 0.0 4.2 4 0 0 4 4 3 0 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|325968156|ref|YP_004244348.1| - 0.0056 16.7 6.1 1.3 9.0 0.0 3.9 3 0 0 3 3 3 1 FAD-NAD(P)-binding Fer4_15 PF13459.6 gi|325968156|ref|YP_004244348.1| - 0.0085 16.8 21.7 0.96 10.2 0.6 5.6 5 0 0 5 5 4 2 4Fe-4S single cluster domain Lycopene_cycl PF05834.12 gi|325968156|ref|YP_004244348.1| - 0.013 14.6 8.6 0.56 9.2 1.8 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein Fer4_3 PF12798.7 gi|325968156|ref|YP_004244348.1| - 0.014 16.3 4.5 0.014 16.3 4.5 5.5 6 0 0 6 6 4 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|325968156|ref|YP_004244348.1| - 0.028 15.3 18.0 2.3 9.1 0.1 4.7 4 0 0 4 4 4 0 4Fe-4S dicluster domain Trp_halogenase PF04820.14 gi|325968156|ref|YP_004244348.1| - 0.057 12.3 6.2 0.032 13.1 0.7 2.2 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|325968156|ref|YP_004244348.1| - 0.075 12.9 2.6 1.5 8.7 0.3 2.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|325968156|ref|YP_004244348.1| - 0.076 13.3 1.4 11 6.3 0.1 3.3 3 0 0 3 3 2 0 TrkA-N domain K_oxygenase PF13434.6 gi|325968156|ref|YP_004244348.1| - 0.13 11.4 0.0 1.3 8.1 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) ThiF PF00899.21 gi|325968156|ref|YP_004244348.1| - 0.17 11.2 2.7 1.3 8.3 0.2 2.6 2 0 0 2 2 2 0 ThiF family POR PF01558.18 gi|325968157|ref|YP_004244349.1| - 1e-29 103.8 0.1 1.2e-29 103.6 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|325968158|ref|YP_004244350.1| - 1.9e-34 118.7 0.2 2.7e-34 118.2 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FmrO PF07091.11 gi|325968158|ref|YP_004244350.1| - 0.077 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DUF2752 PF10825.8 gi|325968158|ref|YP_004244350.1| - 0.22 11.6 0.2 0.22 11.6 0.2 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) POR_N PF01855.19 gi|325968159|ref|YP_004244351.1| - 2.3e-66 223.8 0.0 3.1e-66 223.4 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|325968159|ref|YP_004244351.1| - 2e-16 60.1 0.0 4.2e-16 59.1 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|325968159|ref|YP_004244351.1| - 0.0019 18.1 0.0 0.0035 17.2 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain RIO1 PF01163.22 gi|325968160|ref|YP_004244352.1| - 1.7e-51 174.5 0.0 2.6e-51 173.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|325968160|ref|YP_004244352.1| - 0.03 14.3 0.0 0.53 10.2 0.0 2.3 2 0 0 2 2 2 0 Phosphotransferase enzyme family Topoisom_bac PF01131.20 gi|325968164|ref|YP_004244356.1| - 5.2e-81 272.8 0.0 6.9e-81 272.4 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|325968164|ref|YP_004244356.1| - 1.3e-20 73.5 0.4 9.6e-20 70.7 0.0 2.7 3 0 0 3 3 2 1 Toprim domain zf_Rg PF17915.1 gi|325968164|ref|YP_004244356.1| - 6.2e-16 57.5 0.3 1.5e-15 56.3 0.3 1.6 1 0 0 1 1 1 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|325968164|ref|YP_004244356.1| - 1e-13 51.4 0.0 3.2e-13 49.8 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|325968164|ref|YP_004244356.1| - 9.9e-07 28.9 0.0 2.5e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|325968164|ref|YP_004244356.1| - 2.3e-05 24.7 0.4 0.15 12.4 0.3 4.6 4 1 0 4 4 4 1 Helicase conserved C-terminal domain AAA_25 PF13481.6 gi|325968164|ref|YP_004244356.1| - 0.0068 16.0 0.0 0.021 14.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain FAM35_C PF15793.5 gi|325968164|ref|YP_004244356.1| - 0.048 13.1 0.1 0.1 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein family FAM35, C-terminal Glyco_hydro_57 PF03065.15 gi|325968164|ref|YP_004244356.1| - 0.054 12.7 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 PhoH PF02562.16 gi|325968164|ref|YP_004244356.1| - 0.067 12.6 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein PIN_2 PF10130.9 gi|325968164|ref|YP_004244356.1| - 0.068 13.4 0.2 0.6 10.3 0.0 2.6 2 0 0 2 2 2 0 PIN domain AAA_19 PF13245.6 gi|325968164|ref|YP_004244356.1| - 0.12 12.8 0.0 0.35 11.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|325968164|ref|YP_004244356.1| - 0.12 11.7 2.6 1.2 8.4 0.0 3.1 2 1 1 3 3 3 0 KaiC DUF87 PF01935.17 gi|325968164|ref|YP_004244356.1| - 0.21 11.6 1.7 1.4 9.0 1.7 2.4 1 1 0 1 1 1 0 Helicase HerA, central domain DUF2540 PF10802.8 gi|325968164|ref|YP_004244356.1| - 0.37 10.9 3.5 0.29 11.2 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2540) DUF2067 PF09840.9 gi|325968164|ref|YP_004244356.1| - 5.6 6.5 10.2 0.43 10.1 0.7 3.8 5 0 0 5 5 5 0 Uncharacterized protein conserved in archaea (DUF2067) AAA_23 PF13476.6 gi|325968164|ref|YP_004244356.1| - 6.4 7.2 7.5 6.8 7.1 0.5 3.1 3 0 0 3 3 2 0 AAA domain Ribonuc_red_lgC PF02867.15 gi|325968165|ref|YP_004244357.1| - 5.2e-148 493.8 0.0 6.2e-148 493.6 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|325968165|ref|YP_004244357.1| - 1.4e-23 82.7 0.2 4.9e-23 80.9 0.1 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain LAGLIDADG_3 PF14528.6 gi|325968165|ref|YP_004244357.1| - 9.7e-23 80.3 1.1 7.1e-20 71.1 0.4 3.3 3 0 0 3 3 3 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|325968165|ref|YP_004244357.1| - 2e-14 53.7 0.0 2.8e-12 46.7 0.0 3.2 3 1 0 3 3 3 1 Intein splicing domain ATP-cone PF03477.16 gi|325968165|ref|YP_004244357.1| - 0.003 18.1 0.0 0.0097 16.5 0.0 2.0 1 0 0 1 1 1 1 ATP cone domain Hom_end PF05204.14 gi|325968165|ref|YP_004244357.1| - 0.038 14.1 0.1 1.4 9.1 0.0 2.4 2 0 0 2 2 2 0 Homing endonuclease AOX PF01786.17 gi|325968165|ref|YP_004244357.1| - 0.041 13.4 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Alternative oxidase LAGLIDADG_WhiA PF14527.6 gi|325968165|ref|YP_004244357.1| - 0.1 12.7 0.0 1.2 9.2 0.0 2.6 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain DUF1922 PF09082.10 gi|325968166|ref|YP_004244358.1| - 2.7e-06 27.6 0.4 3e-06 27.4 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) TF_Zn_Ribbon PF08271.12 gi|325968166|ref|YP_004244358.1| - 6.7e-06 25.5 2.5 1.2e-05 24.7 2.5 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|325968166|ref|YP_004244358.1| - 4.5e-05 23.3 0.6 0.16 11.9 0.2 2.2 1 1 1 2 2 2 2 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.6 gi|325968166|ref|YP_004244358.1| - 8.5e-05 21.8 3.3 0.0005 19.4 3.3 1.9 1 1 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|325968166|ref|YP_004244358.1| - 0.00091 19.1 0.4 0.0012 18.8 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain CpXC PF14353.6 gi|325968166|ref|YP_004244358.1| - 0.0057 16.7 3.3 0.016 15.3 0.1 2.1 1 1 1 2 2 2 1 CpXC protein RNA_POL_M_15KD PF02150.16 gi|325968166|ref|YP_004244358.1| - 0.0071 16.2 1.4 0.014 15.3 1.4 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Ribosomal_L37ae PF01780.19 gi|325968166|ref|YP_004244358.1| - 0.0075 16.3 0.6 0.0077 16.3 0.6 1.2 1 0 0 1 1 1 1 Ribosomal L37ae protein family zf-ISL3 PF14690.6 gi|325968166|ref|YP_004244358.1| - 0.0098 16.5 5.0 0.5 11.1 0.5 2.5 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf_C2H2_10 PF18414.1 gi|325968166|ref|YP_004244358.1| - 0.01 15.4 3.6 1.1 8.8 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger NOB1_Zn_bind PF08772.11 gi|325968166|ref|YP_004244358.1| - 0.011 15.9 1.2 0.13 12.5 1.2 2.0 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|325968166|ref|YP_004244358.1| - 0.021 14.8 1.2 0.033 14.2 1.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|325968166|ref|YP_004244358.1| - 0.03 14.0 8.3 0.36 10.6 8.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain FYDLN_acid PF09538.10 gi|325968166|ref|YP_004244358.1| - 0.035 14.8 0.7 0.12 13.1 0.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS1595 PF12760.7 gi|325968166|ref|YP_004244358.1| - 0.039 13.9 5.2 0.22 11.5 5.7 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-IS66 PF13005.7 gi|325968166|ref|YP_004244358.1| - 0.046 14.1 2.2 2.9 8.4 0.1 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS91 PF14319.6 gi|325968166|ref|YP_004244358.1| - 0.048 13.7 0.4 0.049 13.7 0.4 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain UPF0547 PF10571.9 gi|325968166|ref|YP_004244358.1| - 0.064 13.4 4.9 0.26 11.4 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Cys_rich_CPXG PF14255.6 gi|325968166|ref|YP_004244358.1| - 0.086 12.8 1.2 1.4 8.9 0.2 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG RecR PF02132.15 gi|325968166|ref|YP_004244358.1| - 0.11 12.1 2.1 0.59 9.7 2.0 2.0 1 1 0 1 1 1 0 RecR protein Cys_rich_CPCC PF14206.6 gi|325968166|ref|YP_004244358.1| - 0.12 12.2 3.5 0.77 9.6 4.0 1.8 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-Di19 PF05605.12 gi|325968166|ref|YP_004244358.1| - 0.13 12.6 2.5 0.9 9.9 0.2 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn_ribbon_SprT PF17283.2 gi|325968166|ref|YP_004244358.1| - 0.14 12.1 3.6 0.22 11.5 3.6 1.3 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|325968166|ref|YP_004244358.1| - 0.17 12.1 4.0 1.5 9.0 4.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|325968166|ref|YP_004244358.1| - 0.18 12.2 1.9 0.29 11.5 1.9 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-LITAF-like PF10601.9 gi|325968166|ref|YP_004244358.1| - 0.18 12.1 4.4 5.9 7.2 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-C2HC_2 PF13913.6 gi|325968166|ref|YP_004244358.1| - 0.28 11.2 6.4 1.3 9.0 1.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HypA PF01155.19 gi|325968166|ref|YP_004244358.1| - 0.3 11.1 2.1 0.4 10.7 1.9 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|325968166|ref|YP_004244358.1| - 0.63 10.6 7.0 0.65 10.5 1.1 2.2 1 1 1 2 2 2 0 Zinc-finger double domain DUF1610 PF07754.11 gi|325968166|ref|YP_004244358.1| - 0.94 9.5 7.7 5.3 7.1 2.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF3797 PF12677.7 gi|325968166|ref|YP_004244358.1| - 1 9.3 7.3 0.73 9.8 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-Mss51 PF13824.6 gi|325968166|ref|YP_004244358.1| - 1.3 9.2 4.9 6.7 6.9 4.9 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-tcix PF14952.6 gi|325968166|ref|YP_004244358.1| - 1.6 8.4 8.2 1.9 8.2 1.5 2.4 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-TFIIB PF13453.6 gi|325968166|ref|YP_004244358.1| - 1.7 8.0 4.4 11 5.5 4.5 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger Ribosomal_L32p PF01783.23 gi|325968166|ref|YP_004244358.1| - 3.6 7.9 6.0 4 7.8 3.5 2.2 2 1 0 2 2 1 0 Ribosomal L32p protein family Thiolase_N PF00108.23 gi|325968167|ref|YP_004244359.1| - 8.2e-59 199.1 0.0 1.2e-58 198.6 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|325968167|ref|YP_004244359.1| - 3.3e-48 162.4 0.6 9.6e-48 160.9 0.5 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|325968167|ref|YP_004244359.1| - 3.4e-08 33.4 0.4 6.8e-06 25.9 0.1 2.7 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|325968167|ref|YP_004244359.1| - 0.031 13.0 0.0 0.1 11.3 0.0 1.7 2 0 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) ACP_syn_III_C PF08541.10 gi|325968167|ref|YP_004244359.1| - 0.099 12.8 0.1 0.57 10.4 0.0 2.2 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Ketoacyl-synt_C PF02801.22 gi|325968167|ref|YP_004244359.1| - 0.12 12.3 0.1 35 4.5 0.1 3.0 2 1 0 2 2 2 0 Beta-ketoacyl synthase, C-terminal domain FUR PF01475.19 gi|325968168|ref|YP_004244360.1| - 1.1e-24 86.8 0.0 1.3e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.10 gi|325968168|ref|YP_004244360.1| - 0.027 14.3 0.0 0.074 12.9 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_23 PF13384.6 gi|325968168|ref|YP_004244360.1| - 0.066 13.0 0.1 1.5 8.7 0.0 2.7 2 2 1 3 3 3 0 Homeodomain-like domain DUF2551 PF10826.8 gi|325968168|ref|YP_004244360.1| - 0.071 13.3 0.3 0.13 12.5 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2551) HTH_32 PF13565.6 gi|325968168|ref|YP_004244360.1| - 0.09 13.4 0.0 0.26 11.9 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.7 gi|325968168|ref|YP_004244360.1| - 0.14 12.3 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|325968168|ref|YP_004244360.1| - 0.14 12.3 0.7 2 8.6 0.7 2.7 1 1 0 1 1 1 0 HTH domain HTH_29 PF13551.6 gi|325968168|ref|YP_004244360.1| - 0.14 12.2 0.0 0.77 9.8 0.0 2.1 1 1 0 1 1 1 0 Winged helix-turn helix Rubrerythrin PF02915.17 gi|325968169|ref|YP_004244361.1| - 3.4e-26 92.3 9.5 2.1e-19 70.3 4.0 2.0 1 1 1 2 2 2 2 Rubrerythrin Ferritin PF00210.24 gi|325968169|ref|YP_004244361.1| - 1.4e-06 28.3 2.4 1.1e-05 25.4 2.4 2.0 1 1 0 1 1 1 1 Ferritin-like domain Ferritin_2 PF13668.6 gi|325968169|ref|YP_004244361.1| - 0.011 15.9 0.3 0.018 15.3 0.2 1.4 1 1 0 1 1 1 0 Ferritin-like domain DUF892 PF05974.12 gi|325968169|ref|YP_004244361.1| - 0.026 14.6 0.7 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF892) Tex_N PF09371.10 gi|325968169|ref|YP_004244361.1| - 0.099 12.3 0.1 6.5 6.4 0.0 2.1 2 0 0 2 2 2 0 Tex-like protein N-terminal domain DUF3501 PF12007.8 gi|325968170|ref|YP_004244362.1| - 5.7e-47 160.1 0.1 6.8e-47 159.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) GatB_N PF02934.15 gi|325968171|ref|YP_004244363.1| - 5.1e-66 222.9 0.0 7.2e-66 222.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|325968171|ref|YP_004244363.1| - 1.9e-10 40.8 3.4 4.3e-10 39.6 3.4 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|325968171|ref|YP_004244363.1| - 9.6e-10 38.6 0.0 3.3e-09 36.9 0.0 1.9 1 0 0 1 1 1 1 GAD domain RtcB PF01139.17 gi|325968173|ref|YP_004244365.1| - 8e-156 519.4 0.0 1.1e-155 518.9 0.0 1.2 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Complex1_LYR PF05347.15 gi|325968173|ref|YP_004244365.1| - 0.015 15.3 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 Complex 1 protein (LYR family) Ribosomal_S7 PF00177.21 gi|325968174|ref|YP_004244366.1| - 3.1e-43 147.0 0.2 3.9e-43 146.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Rep_fac_C PF08542.11 gi|325968175|ref|YP_004244367.1| - 3.7e-21 75.3 0.1 1.1e-20 73.8 0.1 1.9 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|325968175|ref|YP_004244367.1| - 1.1e-17 64.8 0.0 2e-17 63.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|325968175|ref|YP_004244367.1| - 1.8e-16 60.3 0.0 1.9e-11 44.0 0.1 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|325968175|ref|YP_004244367.1| - 4.3e-09 36.3 0.0 1.2e-08 34.8 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|325968175|ref|YP_004244367.1| - 4.3e-07 30.5 0.0 0.00021 21.7 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|325968175|ref|YP_004244367.1| - 4.8e-07 30.0 0.1 2e-06 28.1 0.0 2.1 2 0 0 2 2 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|325968175|ref|YP_004244367.1| - 7.4e-07 29.3 0.0 1.6e-06 28.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325968175|ref|YP_004244367.1| - 1.2e-06 28.9 0.1 0.002 18.4 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|325968175|ref|YP_004244367.1| - 2e-06 27.6 0.0 4.7e-06 26.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.6 gi|325968175|ref|YP_004244367.1| - 1.5e-05 24.7 0.0 2.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|325968175|ref|YP_004244367.1| - 2.1e-05 24.5 0.0 6.3e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|325968175|ref|YP_004244367.1| - 2.4e-05 23.8 0.0 0.00092 18.6 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|325968175|ref|YP_004244367.1| - 3.7e-05 23.8 0.0 0.00024 21.2 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|325968175|ref|YP_004244367.1| - 0.00012 22.1 0.0 0.0004 20.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|325968175|ref|YP_004244367.1| - 0.00013 21.7 0.0 0.0013 18.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein T2SSE PF00437.20 gi|325968175|ref|YP_004244367.1| - 0.00014 21.1 0.0 0.01 14.9 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein PhoH PF02562.16 gi|325968175|ref|YP_004244367.1| - 0.00017 21.1 0.0 0.069 12.6 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|325968175|ref|YP_004244367.1| - 0.00021 21.1 0.4 0.00085 19.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|325968175|ref|YP_004244367.1| - 0.00051 20.6 0.0 0.0019 18.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|325968175|ref|YP_004244367.1| - 0.00053 19.3 0.0 0.00089 18.6 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_3 PF07726.11 gi|325968175|ref|YP_004244367.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|325968175|ref|YP_004244367.1| - 0.0014 18.5 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|325968175|ref|YP_004244367.1| - 0.0017 18.2 0.2 0.076 12.8 0.0 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|325968175|ref|YP_004244367.1| - 0.0026 17.3 0.0 0.0043 16.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region TniB PF05621.11 gi|325968175|ref|YP_004244367.1| - 0.0032 16.9 0.1 0.45 9.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein NB-ARC PF00931.22 gi|325968175|ref|YP_004244367.1| - 0.0051 16.0 0.0 0.0087 15.3 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|325968175|ref|YP_004244367.1| - 0.0057 16.6 0.0 0.015 15.2 0.0 1.6 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|325968175|ref|YP_004244367.1| - 0.0063 16.9 0.0 0.013 15.9 0.0 1.7 1 1 0 1 1 1 1 RNA helicase AAA_19 PF13245.6 gi|325968175|ref|YP_004244367.1| - 0.0072 16.7 0.3 0.08 13.3 0.3 2.2 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|325968175|ref|YP_004244367.1| - 0.0073 15.5 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|325968175|ref|YP_004244367.1| - 0.0089 16.2 0.0 0.022 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|325968175|ref|YP_004244367.1| - 0.0097 15.6 0.0 0.64 9.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|325968175|ref|YP_004244367.1| - 0.01 14.9 0.0 0.021 13.9 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATPase PF06745.13 gi|325968175|ref|YP_004244367.1| - 0.012 15.0 0.0 0.028 13.8 0.0 1.6 1 0 0 1 1 1 0 KaiC MeaB PF03308.16 gi|325968175|ref|YP_004244367.1| - 0.019 14.0 0.1 0.54 9.2 0.0 2.3 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|325968175|ref|YP_004244367.1| - 0.03 14.6 0.0 0.11 12.7 0.0 2.1 2 0 0 2 2 1 0 AAA domain DUF2075 PF09848.9 gi|325968175|ref|YP_004244367.1| - 0.033 13.4 0.0 0.48 9.6 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|325968175|ref|YP_004244367.1| - 0.035 13.8 0.0 0.052 13.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MCM PF00493.23 gi|325968175|ref|YP_004244367.1| - 0.04 13.0 0.0 0.089 11.9 0.0 1.6 1 0 0 1 1 1 0 MCM P-loop domain AAA_23 PF13476.6 gi|325968175|ref|YP_004244367.1| - 0.044 14.3 0.0 0.14 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|325968175|ref|YP_004244367.1| - 0.049 13.5 0.0 1.1 9.2 0.0 2.2 1 1 0 1 1 1 0 NACHT domain DNA_pol3_delta PF06144.13 gi|325968175|ref|YP_004244367.1| - 0.064 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit TsaE PF02367.17 gi|325968175|ref|YP_004244367.1| - 0.093 12.7 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|325968175|ref|YP_004244367.1| - 0.098 12.6 0.0 0.9 9.4 0.0 2.4 1 1 0 2 2 2 0 NTPase SNF2_N PF00176.23 gi|325968175|ref|YP_004244367.1| - 0.21 10.3 0.0 0.36 9.5 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA PF00004.29 gi|325968176|ref|YP_004244368.1| - 1.3e-14 54.8 0.1 5.4e-13 49.5 0.0 2.7 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) RFC1 PF08519.12 gi|325968176|ref|YP_004244368.1| - 9.5e-10 38.9 0.1 1.5e-09 38.2 0.1 1.3 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain RuvB_N PF05496.12 gi|325968176|ref|YP_004244368.1| - 4.5e-08 33.0 0.0 9.9e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta PF06144.13 gi|325968176|ref|YP_004244368.1| - 2.4e-06 27.4 0.0 5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|325968176|ref|YP_004244368.1| - 3.8e-06 26.9 0.0 1.1e-05 25.5 0.0 1.8 2 0 0 2 2 1 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|325968176|ref|YP_004244368.1| - 5.1e-06 26.7 0.2 1.1e-05 25.6 0.2 1.6 1 0 0 1 1 1 1 AAA C-terminal domain TIP49 PF06068.13 gi|325968176|ref|YP_004244368.1| - 8.6e-06 25.2 0.0 1.5e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain DUF815 PF05673.13 gi|325968176|ref|YP_004244368.1| - 1.6e-05 24.2 0.0 4.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_33 PF13671.6 gi|325968176|ref|YP_004244368.1| - 1.9e-05 24.8 0.0 3.4e-05 24.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|325968176|ref|YP_004244368.1| - 5e-05 23.3 0.2 0.0005 20.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|325968176|ref|YP_004244368.1| - 8.4e-05 22.9 0.0 0.00021 21.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325968176|ref|YP_004244368.1| - 0.0002 21.8 0.1 0.0012 19.3 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_7 PF12775.7 gi|325968176|ref|YP_004244368.1| - 0.00032 20.3 0.0 0.00053 19.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|325968176|ref|YP_004244368.1| - 0.00032 20.0 0.0 0.00067 19.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.12 gi|325968176|ref|YP_004244368.1| - 0.00033 20.6 0.0 0.41 10.5 0.0 2.6 2 0 0 2 2 2 2 NACHT domain IstB_IS21 PF01695.17 gi|325968176|ref|YP_004244368.1| - 0.00048 19.9 0.0 0.0014 18.4 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|325968176|ref|YP_004244368.1| - 0.00079 20.0 0.1 0.004 17.7 0.1 2.2 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.6 gi|325968176|ref|YP_004244368.1| - 0.0013 18.8 0.0 0.0024 17.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325968176|ref|YP_004244368.1| - 0.0015 18.8 1.6 0.018 15.3 0.5 3.1 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|325968176|ref|YP_004244368.1| - 0.0044 16.6 0.0 0.011 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|325968176|ref|YP_004244368.1| - 0.0055 16.1 0.0 0.014 14.7 0.0 1.7 2 0 0 2 2 1 1 KaiC Mg_chelatase PF01078.21 gi|325968176|ref|YP_004244368.1| - 0.014 14.8 0.0 0.028 13.8 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|325968176|ref|YP_004244368.1| - 0.015 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|325968176|ref|YP_004244368.1| - 0.015 14.5 0.1 0.068 12.3 0.0 2.1 2 1 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.6 gi|325968176|ref|YP_004244368.1| - 0.019 15.4 1.0 0.11 12.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|325968176|ref|YP_004244368.1| - 0.021 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Sigma54_activat PF00158.26 gi|325968176|ref|YP_004244368.1| - 0.038 13.7 0.0 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|325968176|ref|YP_004244368.1| - 0.044 14.3 0.1 0.15 12.6 0.0 1.8 2 0 0 2 2 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|325968176|ref|YP_004244368.1| - 0.047 12.8 0.0 0.1 11.6 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|325968176|ref|YP_004244368.1| - 0.05 13.1 0.0 0.11 11.9 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.22 gi|325968176|ref|YP_004244368.1| - 0.06 13.7 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.18 gi|325968176|ref|YP_004244368.1| - 0.07 13.0 0.1 0.34 10.7 0.0 2.1 2 1 0 2 2 1 0 Bacterial dnaA protein MMR_HSR1 PF01926.23 gi|325968176|ref|YP_004244368.1| - 0.08 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|325968176|ref|YP_004244368.1| - 0.085 12.6 0.1 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|325968176|ref|YP_004244368.1| - 0.087 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|325968176|ref|YP_004244368.1| - 0.091 11.8 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein PT-TG PF14449.6 gi|325968176|ref|YP_004244368.1| - 0.11 12.4 0.0 0.37 10.7 0.0 1.8 1 0 0 1 1 1 0 Pre-toxin TG TsaE PF02367.17 gi|325968176|ref|YP_004244368.1| - 0.12 12.4 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|325968176|ref|YP_004244368.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_2 PF07724.14 gi|325968176|ref|YP_004244368.1| - 0.15 12.2 0.0 0.4 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) ResIII PF04851.15 gi|325968176|ref|YP_004244368.1| - 0.16 11.9 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TyeA PF09059.10 gi|325968177|ref|YP_004244369.1| - 0.036 14.2 0.0 0.041 14.0 0.0 1.1 1 0 0 1 1 1 0 TyeA UPF0126 PF03458.13 gi|325968178|ref|YP_004244370.1| - 3.3e-40 135.8 25.1 1.9e-23 82.1 9.0 2.6 3 0 0 3 3 3 2 UPF0126 domain Oxidored_molyb PF00174.19 gi|325968179|ref|YP_004244371.1| - 1.2e-34 119.4 0.0 1.5e-34 119.1 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF89 PF01937.19 gi|325968180|ref|YP_004244372.1| - 6.7e-19 68.1 0.9 5.6e-17 61.7 0.9 2.1 1 1 0 1 1 1 1 Protein of unknown function DUF89 Pox_H7 PF04787.12 gi|325968180|ref|YP_004244372.1| - 0.08 13.5 0.0 0.16 12.5 0.0 1.5 1 0 0 1 1 1 0 Late protein H7 TruD PF01142.18 gi|325968183|ref|YP_004244375.1| - 1.6e-126 422.5 0.0 1.8e-126 422.4 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Prok-RING_2 PF14445.6 gi|325968184|ref|YP_004244376.1| - 0.0084 16.3 2.4 0.014 15.6 0.2 2.0 2 0 0 2 2 2 1 Prokaryotic RING finger family 2 DUF359 PF04019.12 gi|325968186|ref|YP_004244378.1| - 3.2e-29 101.1 0.0 4e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) RibD_C PF01872.17 gi|325968187|ref|YP_004244379.1| - 8.8e-54 182.4 0.0 9.9e-54 182.2 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Asp_protease_2 PF13650.6 gi|325968189|ref|YP_004244381.1| - 8.3e-07 29.6 0.0 1.3e-06 29.0 0.0 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|325968189|ref|YP_004244381.1| - 0.00081 19.9 0.0 0.0011 19.5 0.0 1.4 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease DUF72 PF01904.18 gi|325968193|ref|YP_004244385.1| - 4e-31 108.8 0.0 5.1e-31 108.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF364 PF04016.12 gi|325968194|ref|YP_004244386.1| - 2e-29 102.0 0.0 3.2e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|325968194|ref|YP_004244386.1| - 2.8e-08 33.9 0.0 5.2e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF473 PF04322.12 gi|325968194|ref|YP_004244386.1| - 0.028 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF473) PAE PF03283.13 gi|325968194|ref|YP_004244386.1| - 0.24 10.5 0.0 0.32 10.1 0.0 1.1 1 0 0 1 1 1 0 Pectinacetylesterase AA_permease PF00324.21 gi|325968196|ref|YP_004244388.1| - 1.3e-26 93.3 49.1 2e-26 92.7 49.1 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|325968196|ref|YP_004244388.1| - 7.2e-15 54.7 50.9 9.6e-15 54.3 50.9 1.2 1 0 0 1 1 1 1 Amino acid permease HCV_NS4a PF01006.20 gi|325968196|ref|YP_004244388.1| - 1.4 8.7 4.3 6.4 6.6 4.3 2.1 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a MFS_1 PF07690.16 gi|325968197|ref|YP_004244389.1| - 1e-24 87.1 60.0 1e-24 87.1 60.0 2.7 1 1 1 2 2 2 1 Major Facilitator Superfamily Amidohydro_2 PF04909.14 gi|325968199|ref|YP_004244391.1| - 1.8e-13 50.9 0.0 2.5e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase AMP-binding PF00501.28 gi|325968200|ref|YP_004244392.1| - 6e-88 295.3 0.0 7.1e-88 295.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325968200|ref|YP_004244392.1| - 3.5e-20 72.8 1.0 5.7e-20 72.1 0.2 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|325968201|ref|YP_004244393.1| - 2e-44 151.4 0.4 3e-44 150.8 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|325968201|ref|YP_004244393.1| - 5.9e-28 97.8 0.0 1.2e-27 96.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|325968201|ref|YP_004244393.1| - 8.9e-25 86.7 0.0 1.5e-24 86.0 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|325968201|ref|YP_004244393.1| - 5.6e-24 84.9 0.0 7.9e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|325968201|ref|YP_004244393.1| - 0.0005 19.8 0.0 0.0022 17.7 0.0 1.9 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB_N PF11794.8 gi|325968202|ref|YP_004244394.1| - 1e-79 268.1 1.7 1.5e-79 267.5 1.7 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|325968202|ref|YP_004244394.1| - 4.3e-51 172.9 1.5 5.9e-51 172.4 1.5 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|325968202|ref|YP_004244394.1| - 0.00035 20.7 0.0 0.00066 19.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain PALP PF00291.25 gi|325968203|ref|YP_004244395.1| - 7.9e-36 124.0 0.1 9.4e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme GTP_EFTU_D4 PF14578.6 gi|325968204|ref|YP_004244396.1| - 7.5e-39 131.5 3.6 2.2e-38 130.0 3.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|325968204|ref|YP_004244396.1| - 5.5e-28 97.8 0.0 4e-27 95.0 0.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|325968204|ref|YP_004244396.1| - 2.3e-18 66.2 1.0 7.1e-18 64.7 0.4 2.0 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|325968204|ref|YP_004244396.1| - 2.9e-08 34.0 7.3 3.4e-07 30.6 0.1 3.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|325968204|ref|YP_004244396.1| - 9.4e-05 22.5 0.0 0.00022 21.3 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|325968204|ref|YP_004244396.1| - 0.014 15.6 0.0 0.033 14.4 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|325968204|ref|YP_004244396.1| - 0.021 14.4 0.0 0.26 10.9 0.0 2.3 1 1 0 1 1 1 0 Ras family ATP_bind_1 PF03029.17 gi|325968204|ref|YP_004244396.1| - 0.11 12.2 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DUF58 PF01882.18 gi|325968205|ref|YP_004244397.1| - 3.1e-06 27.4 0.0 6.3e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Transglut_core PF01841.19 gi|325968206|ref|YP_004244398.1| - 3.3e-10 40.4 0.0 5.1e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily Cpta_toxin PF07254.12 gi|325968206|ref|YP_004244398.1| - 0.27 11.2 1.0 0.66 10.0 1.0 1.6 1 0 0 1 1 1 0 Membrane-bound toxin component of toxin-antitoxin system DUF308 PF03729.13 gi|325968206|ref|YP_004244398.1| - 2.3 8.6 8.3 0.22 11.9 0.7 2.7 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF4129 PF13559.6 gi|325968207|ref|YP_004244399.1| - 0.0066 16.7 0.0 0.0095 16.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) Ribosomal_L24e PF01246.20 gi|325968208|ref|YP_004244400.1| - 4.7e-22 78.0 0.9 5.1e-22 77.9 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|325968208|ref|YP_004244400.1| - 0.0003 20.7 0.1 0.0004 20.3 0.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|325968208|ref|YP_004244400.1| - 0.023 14.2 0.2 0.037 13.5 0.2 1.3 1 0 0 1 1 1 0 zinc-finger of the FCS-type, C2-C2 YHS PF04945.13 gi|325968208|ref|YP_004244400.1| - 0.098 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 YHS domain DUF2116 PF09889.9 gi|325968208|ref|YP_004244400.1| - 0.71 9.9 4.7 2.2 8.3 0.2 2.3 2 1 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NUDIX PF00293.28 gi|325968209|ref|YP_004244401.1| - 1.7e-16 60.5 0.0 2e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain HhH-GPD PF00730.25 gi|325968210|ref|YP_004244402.1| - 1e-19 71.0 0.0 1.3e-19 70.6 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|325968210|ref|YP_004244402.1| - 4e-05 23.2 0.2 0.00013 21.7 0.2 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|325968210|ref|YP_004244402.1| - 0.00095 19.4 2.8 0.0019 18.5 2.8 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|325968210|ref|YP_004244402.1| - 0.0013 19.3 1.2 0.0048 17.5 0.1 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|325968210|ref|YP_004244402.1| - 0.0026 18.1 0.1 0.1 12.9 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|325968210|ref|YP_004244402.1| - 0.025 14.6 0.0 0.055 13.5 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) DUF1677 PF07911.13 gi|325968210|ref|YP_004244402.1| - 0.11 12.9 0.2 0.22 11.9 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1677) Proteasome PF00227.26 gi|325968211|ref|YP_004244403.1| - 2.8e-48 164.0 0.1 3.1e-48 163.8 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit FKBP26_C PF18046.1 gi|325968212|ref|YP_004244404.1| - 1.5e-23 82.7 6.5 2.3e-23 82.1 5.4 1.9 2 0 0 2 2 2 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|325968212|ref|YP_004244404.1| - 5.3e-07 29.9 0.0 1.5e-06 28.5 0.0 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase DUF3553 PF12073.8 gi|325968212|ref|YP_004244404.1| - 0.062 13.0 2.2 0.071 12.8 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) MS_channel PF00924.18 gi|325968212|ref|YP_004244404.1| - 0.08 12.5 1.5 1.3 8.5 0.3 2.5 1 1 1 2 2 2 0 Mechanosensitive ion channel DUF131 PF01998.17 gi|325968213|ref|YP_004244405.1| - 1.1e-21 76.3 1.7 1.1e-21 76.3 1.7 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF898 PF05987.13 gi|325968213|ref|YP_004244405.1| - 0.012 14.7 0.4 0.014 14.5 0.4 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) TctB PF07331.11 gi|325968213|ref|YP_004244405.1| - 0.016 15.5 5.1 0.3 11.4 5.1 2.0 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Ninjurin PF04923.12 gi|325968213|ref|YP_004244405.1| - 0.024 14.5 1.9 0.043 13.8 1.9 1.4 1 1 0 1 1 1 0 Ninjurin DUF2976 PF11190.8 gi|325968213|ref|YP_004244405.1| - 0.026 14.3 0.1 0.026 14.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) DUF2207 PF09972.9 gi|325968213|ref|YP_004244405.1| - 0.062 12.1 3.9 0.082 11.7 3.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF1980 PF09323.10 gi|325968213|ref|YP_004244405.1| - 0.079 12.9 0.9 0.31 11.0 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) DUF1673 PF07895.11 gi|325968213|ref|YP_004244405.1| - 0.12 12.1 3.1 0.14 11.9 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) KASH PF10541.9 gi|325968213|ref|YP_004244405.1| - 0.13 12.5 4.5 5.8 7.3 3.0 2.1 2 0 0 2 2 2 0 Nuclear envelope localisation domain MRAP PF15183.6 gi|325968213|ref|YP_004244405.1| - 0.2 11.6 0.9 5.6 7.0 1.0 2.0 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family FixS PF03597.15 gi|325968213|ref|YP_004244405.1| - 0.26 11.0 0.0 0.26 11.0 0.0 2.4 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Saf_2TM PF18303.1 gi|325968213|ref|YP_004244405.1| - 0.35 10.5 4.7 0.71 9.5 0.1 2.1 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain EphA2_TM PF14575.6 gi|325968213|ref|YP_004244405.1| - 0.35 11.8 5.7 0.78 10.7 0.0 2.2 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain OSTbeta PF15048.6 gi|325968213|ref|YP_004244405.1| - 0.54 10.4 2.3 2.5 8.2 0.0 2.0 2 0 0 2 2 2 0 Organic solute transporter subunit beta protein DUF3784 PF12650.7 gi|325968213|ref|YP_004244405.1| - 0.77 10.0 8.5 5.4 7.3 8.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) IncE PF17627.2 gi|325968213|ref|YP_004244405.1| - 2 8.4 6.9 0.6 10.1 0.5 2.1 2 0 0 2 2 2 0 Inclusion membrane protein E DUF5305 PF17231.2 gi|325968213|ref|YP_004244405.1| - 2.1 7.7 4.5 0.93 8.9 0.1 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5305) Syndecan PF01034.20 gi|325968213|ref|YP_004244405.1| - 2.1 8.3 8.6 1.7 8.6 0.8 2.3 2 0 0 2 2 2 0 Syndecan domain ECSCR PF15820.5 gi|325968213|ref|YP_004244405.1| - 2.1 8.2 7.4 2.9 7.8 0.2 2.1 2 0 0 2 2 2 0 Endothelial cell-specific chemotaxis regulator Sigma_reg_N PF13800.6 gi|325968213|ref|YP_004244405.1| - 2.2 8.6 9.5 6.4 7.1 0.1 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Tad PF13400.6 gi|325968213|ref|YP_004244405.1| - 2.9 8.3 9.3 0.86 10.0 0.2 2.4 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Baculo_11_kDa PF06143.11 gi|325968213|ref|YP_004244405.1| - 5.8 6.6 6.5 28 4.4 0.0 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family SecG PF03840.14 gi|325968213|ref|YP_004244405.1| - 8.5 6.5 14.0 5.1 7.3 1.3 2.5 2 1 0 2 2 2 0 Preprotein translocase SecG subunit CcmD PF04995.14 gi|325968214|ref|YP_004244406.1| - 0.004 17.2 0.1 0.004 17.2 0.1 2.2 2 0 0 2 2 2 1 Heme exporter protein D (CcmD) DUF2207 PF09972.9 gi|325968214|ref|YP_004244406.1| - 0.018 13.8 6.8 0.026 13.3 6.8 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Pox_P21 PF05313.12 gi|325968214|ref|YP_004244406.1| - 0.034 13.7 6.9 0.043 13.4 6.9 1.0 1 0 0 1 1 1 0 Poxvirus P21 membrane protein DUF2370 PF10176.9 gi|325968214|ref|YP_004244406.1| - 0.041 13.5 0.1 0.059 13.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) YtpI PF14007.6 gi|325968214|ref|YP_004244406.1| - 0.052 13.7 0.1 0.052 13.7 0.1 2.7 2 1 0 2 2 2 0 YtpI-like protein DUF4231 PF14015.6 gi|325968214|ref|YP_004244406.1| - 0.091 13.2 7.5 0.67 10.4 7.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) DUF3290 PF11694.8 gi|325968214|ref|YP_004244406.1| - 0.11 12.4 0.9 0.11 12.4 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3290) DUF4282 PF14110.6 gi|325968214|ref|YP_004244406.1| - 0.32 11.8 16.0 2 9.2 1.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) LapA_dom PF06305.11 gi|325968214|ref|YP_004244406.1| - 0.45 10.4 0.1 0.45 10.4 0.1 2.4 2 1 0 2 2 2 0 Lipopolysaccharide assembly protein A domain TPPK_C PF12555.8 gi|325968214|ref|YP_004244406.1| - 1.1 9.3 11.3 0.1 12.7 6.2 2.0 2 1 0 2 2 2 0 Thiamine pyrophosphokinase C terminal SseC PF04888.12 gi|325968214|ref|YP_004244406.1| - 1.6 8.3 6.3 2.1 7.9 6.3 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family DHHC PF01529.20 gi|325968214|ref|YP_004244406.1| - 2 8.5 6.1 3.9 7.6 6.1 1.5 1 1 0 1 1 1 0 DHHC palmitoyltransferase Herpes_glycop PF01528.16 gi|325968214|ref|YP_004244406.1| - 2.5 6.9 9.5 3.7 6.3 4.2 2.0 2 0 0 2 2 2 0 Herpesvirus glycoprotein M Tad PF13400.6 gi|325968214|ref|YP_004244406.1| - 3 8.2 0.0 3 8.2 0.0 2.9 3 0 0 3 3 3 0 Putative Flp pilus-assembly TadE/G-like DUF3139 PF11337.8 gi|325968214|ref|YP_004244406.1| - 3.4 8.4 7.4 5.9 7.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) Aminotran_1_2 PF00155.21 gi|325968215|ref|YP_004244407.1| - 3.3e-23 82.5 0.0 4.1e-23 82.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|325968215|ref|YP_004244407.1| - 0.00027 19.9 0.0 0.00036 19.5 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|325968215|ref|YP_004244407.1| - 0.0063 15.8 0.0 0.0095 15.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase CTP_synth_N PF06418.14 gi|325968217|ref|YP_004244409.1| - 1.1e-120 401.9 0.1 1.9e-120 401.1 0.1 1.4 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|325968217|ref|YP_004244409.1| - 4.5e-55 186.4 0.0 6.6e-55 185.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|325968217|ref|YP_004244409.1| - 5.1e-08 32.9 0.0 1.3e-07 31.6 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|325968217|ref|YP_004244409.1| - 0.00018 21.5 0.0 0.00023 21.2 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain HGD-D PF06050.13 gi|325968217|ref|YP_004244409.1| - 0.0046 16.8 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 2-hydroxyglutaryl-CoA dehydratase, D-component TRF PF08558.10 gi|325968218|ref|YP_004244410.1| - 0.0099 15.5 0.4 0.011 15.4 0.4 1.1 1 0 0 1 1 1 1 Telomere repeat binding factor (TRF) ODV-E18 PF10717.9 gi|325968219|ref|YP_004244411.1| - 0.081 12.8 2.7 0.1 12.5 2.7 1.1 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DS PF01916.17 gi|325968220|ref|YP_004244412.1| - 4.9e-99 331.2 0.0 5.6e-99 331.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CMAS PF02353.20 gi|325968221|ref|YP_004244413.1| - 4.3e-07 29.5 0.0 5.4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase HTH_47 PF16221.5 gi|325968221|ref|YP_004244413.1| - 1.9e-06 27.3 0.1 6e-06 25.7 0.0 1.8 2 0 0 2 2 2 1 winged helix-turn-helix Methyltransf_25 PF13649.6 gi|325968221|ref|YP_004244413.1| - 5.3e-06 27.1 0.0 9.1e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325968221|ref|YP_004244413.1| - 9e-06 25.6 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|325968221|ref|YP_004244413.1| - 3e-05 24.0 0.0 5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|325968221|ref|YP_004244413.1| - 3.2e-05 23.3 0.0 4.7e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain DOT1 PF08123.13 gi|325968221|ref|YP_004244413.1| - 6.3e-05 22.6 0.0 0.00013 21.6 0.0 1.5 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_4 PF02390.17 gi|325968221|ref|YP_004244413.1| - 0.0041 16.6 0.0 0.0071 15.8 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase TFIIE_alpha PF02002.17 gi|325968221|ref|YP_004244413.1| - 0.0042 16.9 1.3 0.012 15.5 1.3 1.8 1 0 0 1 1 1 1 TFIIE alpha subunit UPF0020 PF01170.18 gi|325968221|ref|YP_004244413.1| - 0.0043 16.8 0.0 0.0069 16.1 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|325968221|ref|YP_004244413.1| - 0.005 16.8 0.0 0.008 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|325968221|ref|YP_004244413.1| - 0.0063 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MarR_2 PF12802.7 gi|325968221|ref|YP_004244413.1| - 0.0088 15.9 0.1 0.088 12.7 0.0 2.1 2 0 0 2 2 2 1 MarR family N6_Mtase PF02384.16 gi|325968221|ref|YP_004244413.1| - 0.02 14.2 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_12 PF08242.12 gi|325968221|ref|YP_004244413.1| - 0.032 15.0 0.0 0.056 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF742 PF05331.11 gi|325968221|ref|YP_004244413.1| - 0.033 14.0 0.0 0.059 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) RrnaAD PF00398.20 gi|325968221|ref|YP_004244413.1| - 0.038 13.0 0.0 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|325968221|ref|YP_004244413.1| - 0.045 13.3 0.0 0.081 12.5 0.0 1.5 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase HTH_24 PF13412.6 gi|325968221|ref|YP_004244413.1| - 0.048 13.2 0.9 0.1 12.2 0.4 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MTS PF05175.14 gi|325968221|ref|YP_004244413.1| - 0.051 13.1 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|325968221|ref|YP_004244413.1| - 0.059 14.0 0.0 0.093 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TrmB PF01978.19 gi|325968221|ref|YP_004244413.1| - 0.06 13.2 0.2 0.12 12.2 0.2 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PqqD PF05402.12 gi|325968221|ref|YP_004244413.1| - 0.098 13.0 0.1 0.46 10.8 0.1 2.1 1 1 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) Methyltransf_8 PF05148.15 gi|325968221|ref|YP_004244413.1| - 0.1 12.4 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_23 PF13489.6 gi|325968221|ref|YP_004244413.1| - 0.12 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain BLOC1_2 PF10046.9 gi|325968222|ref|YP_004244414.1| - 0.073 13.4 0.1 1.7 9.0 0.0 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Peptidase_M48 PF01435.18 gi|325968223|ref|YP_004244415.1| - 2e-24 86.5 0.0 3.4e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 DUF3188 PF11384.8 gi|325968223|ref|YP_004244415.1| - 0.056 13.2 0.4 0.056 13.2 0.4 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3188) Reprolysin_3 PF13582.6 gi|325968223|ref|YP_004244415.1| - 0.13 12.8 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF2207 PF09972.9 gi|325968223|ref|YP_004244415.1| - 1.9 7.2 11.3 0.46 9.2 0.0 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF87 PF01935.17 gi|325968225|ref|YP_004244417.1| - 1.2e-09 38.6 0.7 4.1e-09 36.9 0.0 2.1 2 0 0 2 2 2 1 Helicase HerA, central domain ATPase_2 PF01637.18 gi|325968225|ref|YP_004244417.1| - 0.0037 17.2 0.1 2.2 8.1 0.0 2.5 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|325968225|ref|YP_004244417.1| - 0.04 14.2 1.2 10 6.4 0.1 2.5 2 1 0 2 2 2 0 AAA domain PspB PF06667.12 gi|325968225|ref|YP_004244417.1| - 0.28 11.3 1.4 0.8 9.8 0.3 2.2 2 0 0 2 2 2 0 Phage shock protein B SapB_1 PF05184.15 gi|325968225|ref|YP_004244417.1| - 3.9 7.6 5.5 0.51 10.4 0.1 2.4 3 0 0 3 3 3 0 Saposin-like type B, region 1 Helicase_C_2 PF13307.6 gi|325968226|ref|YP_004244418.1| - 2.2e-21 76.8 0.0 7.1e-21 75.1 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|325968226|ref|YP_004244418.1| - 4.4e-05 23.2 0.5 8.8e-05 22.2 0.5 1.5 1 1 0 1 1 1 1 DEAD_2 AAA_19 PF13245.6 gi|325968226|ref|YP_004244418.1| - 0.017 15.5 0.0 0.034 14.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|325968226|ref|YP_004244418.1| - 0.056 13.2 0.0 0.9 9.3 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|325968226|ref|YP_004244418.1| - 0.074 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|325968226|ref|YP_004244418.1| - 0.14 11.6 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.6 gi|325968226|ref|YP_004244418.1| - 0.15 11.6 0.0 0.5 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain SesA PF17107.5 gi|325968227|ref|YP_004244419.1| - 0.047 13.9 0.2 0.083 13.1 0.1 1.4 1 1 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases TatD_DNase PF01026.21 gi|325968228|ref|YP_004244420.1| - 2e-45 155.2 0.0 2.5e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase CBM_3 PF00942.18 gi|325968229|ref|YP_004244421.1| - 0.019 15.4 0.2 8.4 6.9 0.1 2.4 2 0 0 2 2 2 0 Cellulose binding domain CH PF00307.31 gi|325968229|ref|YP_004244421.1| - 0.073 13.3 0.9 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 Calponin homology (CH) domain zf-ISL3 PF14690.6 gi|325968229|ref|YP_004244421.1| - 0.28 11.9 2.1 0.38 11.4 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Auto_anti-p27 PF06677.12 gi|325968229|ref|YP_004244421.1| - 0.54 10.5 4.3 0.28 11.4 0.6 2.0 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_recom PF13408.6 gi|325968229|ref|YP_004244421.1| - 0.72 10.4 3.0 1.5 9.4 3.0 1.5 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain AAA_assoc_C PF09821.9 gi|325968230|ref|YP_004244422.1| - 4e-29 101.6 0.1 5.4e-29 101.1 0.1 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain E3_UFM1_ligase PF09743.9 gi|325968231|ref|YP_004244423.1| - 0.0044 16.7 0.5 0.0054 16.4 0.5 1.1 1 0 0 1 1 1 1 E3 UFM1-protein ligase 1 ThiP_synth PF10120.9 gi|325968233|ref|YP_004244425.1| - 3.1e-43 147.3 0.3 4.3e-43 146.8 0.3 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|325968233|ref|YP_004244425.1| - 8.6e-05 22.5 0.1 0.00051 20.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_23 PF13384.6 gi|325968233|ref|YP_004244425.1| - 0.00014 21.5 0.0 0.0041 16.9 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.6 gi|325968233|ref|YP_004244425.1| - 0.01 15.4 0.0 0.03 13.9 0.0 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_7 PF02796.15 gi|325968233|ref|YP_004244425.1| - 0.012 15.7 0.0 0.026 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_37 PF13744.6 gi|325968233|ref|YP_004244425.1| - 0.028 14.4 0.0 0.07 13.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|325968233|ref|YP_004244425.1| - 0.048 13.5 0.0 0.6 10.0 0.0 2.6 2 1 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT KORA PF16509.5 gi|325968233|ref|YP_004244425.1| - 0.058 13.7 0.1 1.4 9.2 0.0 2.5 1 1 1 2 2 2 0 TrfB plasmid transcriptional repressor RepB PF07506.11 gi|325968233|ref|YP_004244425.1| - 0.098 12.7 0.0 0.33 11.0 0.0 1.7 1 1 1 2 2 2 0 RepB plasmid partitioning protein P22_Cro PF14549.6 gi|325968233|ref|YP_004244425.1| - 0.11 12.3 0.0 0.32 10.9 0.0 1.7 1 1 0 1 1 1 0 DNA-binding transcriptional regulator Cro RimK PF08443.11 gi|325968234|ref|YP_004244426.1| - 2.4e-33 115.3 0.0 3.1e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|325968234|ref|YP_004244426.1| - 2.5e-14 53.0 0.0 3.7e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|325968234|ref|YP_004244426.1| - 2.1e-06 27.9 0.0 6.3e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|325968234|ref|YP_004244426.1| - 0.00015 21.1 0.0 0.37 10.0 0.0 2.3 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|325968234|ref|YP_004244426.1| - 0.0049 16.1 0.0 1.6 7.9 0.0 2.1 2 0 0 2 2 2 2 YheC/D like ATP-grasp UbiD PF01977.16 gi|325968235|ref|YP_004244427.1| - 2.6e-95 319.7 0.1 3e-95 319.5 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MR_MLE_C PF13378.6 gi|325968236|ref|YP_004244428.1| - 3.8e-64 216.3 0.0 4.9e-64 215.9 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|325968236|ref|YP_004244428.1| - 2.3e-13 50.4 0.0 4.2e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Ribosomal_S27 PF01599.19 gi|325968237|ref|YP_004244429.1| - 6.3e-14 51.9 0.8 7.5e-14 51.6 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.11 gi|325968237|ref|YP_004244429.1| - 0.00036 20.4 0.3 0.0004 20.2 0.3 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|325968237|ref|YP_004244429.1| - 0.00055 19.9 2.0 0.00083 19.3 2.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain ADK_lid PF05191.14 gi|325968237|ref|YP_004244429.1| - 0.00094 19.1 4.4 0.16 11.9 0.7 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid YhfH PF14149.6 gi|325968237|ref|YP_004244429.1| - 0.0014 18.5 0.0 0.46 10.5 0.0 2.2 2 0 0 2 2 2 1 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|325968237|ref|YP_004244429.1| - 0.0028 17.1 1.3 0.19 11.3 0.1 2.7 2 1 0 2 2 2 1 TFIIB zinc-binding Ribosomal_L37e PF01907.19 gi|325968237|ref|YP_004244429.1| - 0.0043 17.2 1.1 0.0043 17.2 1.1 1.6 2 0 0 2 2 2 1 Ribosomal protein L37e GFA PF04828.14 gi|325968237|ref|YP_004244429.1| - 0.0078 16.5 1.1 1.6 9.2 0.1 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|325968237|ref|YP_004244429.1| - 0.0086 15.6 0.5 0.97 9.1 0.1 2.2 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger PriA_CRR PF18319.1 gi|325968237|ref|YP_004244429.1| - 0.014 15.4 1.2 0.054 13.5 1.2 1.9 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain zf-ISL3 PF14690.6 gi|325968237|ref|YP_004244429.1| - 0.023 15.4 5.2 0.22 12.2 0.5 2.4 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 gi|325968237|ref|YP_004244429.1| - 0.031 13.7 2.8 0.56 9.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|325968237|ref|YP_004244429.1| - 0.038 13.5 0.3 2.4 7.8 0.0 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger RNA_POL_M_15KD PF02150.16 gi|325968237|ref|YP_004244429.1| - 0.042 13.7 0.3 0.11 12.4 0.3 1.7 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|325968237|ref|YP_004244429.1| - 0.044 13.8 0.5 0.076 13.1 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|325968237|ref|YP_004244429.1| - 0.045 13.7 6.0 0.41 10.6 5.6 2.2 1 1 1 2 2 2 0 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|325968237|ref|YP_004244429.1| - 0.049 13.3 3.7 0.32 10.7 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|325968237|ref|YP_004244429.1| - 0.1 12.3 3.6 3 7.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|325968237|ref|YP_004244429.1| - 0.12 12.6 1.7 0.14 12.3 1.4 1.4 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ACC PF17848.1 gi|325968237|ref|YP_004244429.1| - 0.15 12.1 1.6 6.2 7.0 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Ribosomal_L32p PF01783.23 gi|325968237|ref|YP_004244429.1| - 0.2 11.9 2.0 3.2 8.1 2.0 2.2 1 1 0 1 1 1 0 Ribosomal L32p protein family zinc_ribbon_10 PF10058.9 gi|325968237|ref|YP_004244429.1| - 0.23 11.2 2.0 0.83 9.4 2.0 1.8 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1936 PF09151.10 gi|325968237|ref|YP_004244429.1| - 0.3 11.0 5.6 9.1 6.3 0.4 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Zn_ribbon_recom PF13408.6 gi|325968237|ref|YP_004244429.1| - 0.93 10.1 5.6 14 6.3 6.4 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF4147 PF13660.6 gi|325968238|ref|YP_004244430.1| - 1.6e-06 27.8 0.0 1.8e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) DUF3710 PF12502.8 gi|325968238|ref|YP_004244430.1| - 0.15 11.7 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3710) Glycos_transf_1 PF00534.20 gi|325968239|ref|YP_004244431.1| - 3.3e-44 150.5 0.0 4.8e-44 149.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968239|ref|YP_004244431.1| - 2.2e-29 102.6 1.0 5.9e-29 101.2 1.0 1.8 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|325968239|ref|YP_004244431.1| - 1.7e-28 99.7 0.0 3.2e-28 98.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|325968239|ref|YP_004244431.1| - 1.1e-19 71.5 0.0 1.9e-19 70.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|325968239|ref|YP_004244431.1| - 2.2e-19 70.1 0.8 2.6e-10 40.4 0.2 2.4 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|325968239|ref|YP_004244431.1| - 7.3e-12 45.5 0.0 1.4e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|325968239|ref|YP_004244431.1| - 7.2e-05 22.8 0.0 0.00015 21.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glycogen_syn PF05693.13 gi|325968239|ref|YP_004244431.1| - 0.066 11.8 0.1 4.3 5.8 0.0 2.7 2 1 0 2 2 2 0 Glycogen synthase AAA_17 PF13207.6 gi|325968240|ref|YP_004244432.1| - 5.6e-32 111.0 0.1 7.2e-32 110.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|325968240|ref|YP_004244432.1| - 2.9e-06 27.8 0.0 5.8e-06 26.9 0.0 1.5 1 1 1 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|325968240|ref|YP_004244432.1| - 0.0045 16.7 0.3 0.62 9.7 0.1 2.4 1 1 2 3 3 3 2 Thymidylate kinase AAA_33 PF13671.6 gi|325968240|ref|YP_004244432.1| - 0.006 16.7 0.0 0.013 15.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325968240|ref|YP_004244432.1| - 0.053 13.8 0.0 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|325968240|ref|YP_004244432.1| - 0.068 13.4 0.0 0.29 11.4 0.0 1.8 1 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|325968240|ref|YP_004244432.1| - 0.16 11.7 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DJ-1_PfpI PF01965.24 gi|325968241|ref|YP_004244433.1| - 7e-09 35.7 0.2 9.2e-08 32.1 0.2 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family Fe-ADH_2 PF13685.6 gi|325968242|ref|YP_004244434.1| - 1.1e-54 185.7 0.0 1.4e-54 185.4 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|325968242|ref|YP_004244434.1| - 7.7e-22 77.6 0.1 3.1e-21 75.6 0.1 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|325968242|ref|YP_004244434.1| - 3.3e-07 29.7 0.3 2.5e-06 26.9 0.3 2.2 1 1 0 1 1 1 1 3-dehydroquinate synthase PHO4 PF01384.20 gi|325968243|ref|YP_004244435.1| - 7.3e-19 68.0 31.9 1.2e-17 63.9 31.9 2.0 1 1 0 1 1 1 1 Phosphate transporter family Thi4 PF01946.17 gi|325968244|ref|YP_004244436.1| - 3.9e-72 242.3 0.7 4.6e-72 242.1 0.7 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|325968244|ref|YP_004244436.1| - 6.5e-13 49.0 4.2 6.1e-08 32.6 2.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|325968244|ref|YP_004244436.1| - 1.3e-10 41.2 0.2 1.8e-10 40.7 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|325968244|ref|YP_004244436.1| - 7.1e-10 39.0 0.2 1.3e-09 38.1 0.2 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|325968244|ref|YP_004244436.1| - 1.6e-09 37.4 3.6 8.8e-07 28.3 0.9 2.3 2 1 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|325968244|ref|YP_004244436.1| - 2.8e-07 30.1 0.1 4.1e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|325968244|ref|YP_004244436.1| - 9e-07 28.4 0.2 2.6e-06 26.9 0.2 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|325968244|ref|YP_004244436.1| - 4.8e-05 22.3 1.2 8.8e-05 21.4 1.2 1.4 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|325968244|ref|YP_004244436.1| - 0.00023 20.4 0.9 0.00043 19.5 0.9 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|325968244|ref|YP_004244436.1| - 0.00029 20.2 0.7 0.00042 19.7 0.2 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325968244|ref|YP_004244436.1| - 0.00044 20.8 1.4 0.0017 18.9 0.2 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|325968244|ref|YP_004244436.1| - 0.0009 18.6 0.1 0.0019 17.6 0.1 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase LSDAT_prok PF18171.1 gi|325968244|ref|YP_004244436.1| - 0.014 14.7 0.1 0.023 13.9 0.1 1.3 1 0 0 1 1 1 0 SLOG in TRPM, prokaryote Trp_halogenase PF04820.14 gi|325968244|ref|YP_004244436.1| - 0.019 13.9 0.1 0.038 12.8 0.2 1.4 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.21 gi|325968244|ref|YP_004244436.1| - 0.02 14.2 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.20 gi|325968244|ref|YP_004244436.1| - 0.023 14.8 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Lycopene_cycl PF05834.12 gi|325968244|ref|YP_004244436.1| - 0.095 11.7 0.0 0.29 10.1 0.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|325968244|ref|YP_004244436.1| - 0.098 11.8 0.0 0.21 10.7 0.0 1.5 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|325968244|ref|YP_004244436.1| - 0.11 12.4 0.4 0.35 10.9 0.2 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding Thioredoxin PF00085.20 gi|325968245|ref|YP_004244437.1| - 1.5e-23 82.7 0.0 2.1e-23 82.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|325968245|ref|YP_004244437.1| - 2.3e-06 28.0 0.2 0.00061 20.2 0.2 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|325968245|ref|YP_004244437.1| - 2.7e-05 24.4 0.1 0.02 15.2 0.0 2.4 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|325968245|ref|YP_004244437.1| - 0.0014 18.7 0.0 0.0031 17.5 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|325968245|ref|YP_004244437.1| - 0.0019 18.0 0.1 0.0022 17.8 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_5 PF13743.6 gi|325968245|ref|YP_004244437.1| - 0.048 13.3 1.2 1.1 8.9 0.6 2.3 2 0 0 2 2 2 0 Thioredoxin OST3_OST6 PF04756.13 gi|325968245|ref|YP_004244437.1| - 0.08 12.3 0.0 0.14 11.5 0.0 1.4 1 1 0 1 1 1 0 OST3 / OST6 family, transporter family Aminotran_3 PF00202.21 gi|325968246|ref|YP_004244438.1| - 5.6e-94 315.1 0.0 6.7e-94 314.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|325968246|ref|YP_004244438.1| - 0.063 12.4 0.0 0.076 12.2 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Succ_CoA_lig PF13607.6 gi|325968247|ref|YP_004244439.1| - 3.9e-47 159.5 0.8 7.8e-46 155.3 0.1 2.9 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|325968247|ref|YP_004244439.1| - 3.7e-22 79.0 0.6 1.4e-21 77.2 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|325968247|ref|YP_004244439.1| - 2.2e-15 57.1 0.5 7.1e-15 55.5 0.5 2.0 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|325968247|ref|YP_004244439.1| - 0.17 12.3 0.5 2.2 8.7 0.3 2.8 3 1 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.6 gi|325968248|ref|YP_004244440.1| - 6.6e-77 257.9 0.0 7.5e-77 257.7 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|325968248|ref|YP_004244440.1| - 0.00012 21.7 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|325968248|ref|YP_004244440.1| - 0.00077 19.1 0.0 0.0017 18.0 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|325968248|ref|YP_004244440.1| - 0.0023 17.6 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 gi|325968248|ref|YP_004244440.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Peptidase_M48 PF01435.18 gi|325968249|ref|YP_004244441.1| - 1.3e-33 116.4 0.0 2.1e-33 115.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Amastin PF07344.11 gi|325968249|ref|YP_004244441.1| - 0.0027 17.6 0.5 0.0027 17.6 0.5 1.7 2 0 0 2 2 2 1 Amastin surface glycoprotein Peptidase_M56 PF05569.11 gi|325968249|ref|YP_004244441.1| - 0.035 13.3 0.0 0.12 11.6 0.0 1.9 2 0 0 2 2 2 0 BlaR1 peptidase M56 Zn_peptidase_2 PF04298.12 gi|325968249|ref|YP_004244441.1| - 3.5 7.0 5.3 3.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase DUF1152 PF06626.12 gi|325968252|ref|YP_004244444.1| - 4.4e-100 334.7 1.4 5.2e-100 334.5 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) FtsH_ext PF06480.15 gi|325968253|ref|YP_004244445.1| - 4.1 7.8 8.3 6.1 7.2 0.4 3.0 2 2 0 2 2 2 0 FtsH Extracellular Internalin_N PF12354.8 gi|325968255|ref|YP_004244447.1| - 0.76 9.9 4.6 0.87 9.7 4.6 1.4 1 1 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal Helicase_C PF00271.31 gi|325968256|ref|YP_004244448.1| - 1.5e-19 70.4 1.0 5.1e-19 68.7 0.4 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|325968256|ref|YP_004244448.1| - 7.2e-16 58.1 0.1 1.2e-15 57.4 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|325968256|ref|YP_004244448.1| - 1.3e-11 44.8 0.0 3.5e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Intein_splicing PF14890.6 gi|325968256|ref|YP_004244448.1| - 2.6e-09 37.1 0.0 2e-08 34.3 0.0 2.4 1 1 0 1 1 1 1 Intein splicing domain Helicase_C_2 PF13307.6 gi|325968256|ref|YP_004244448.1| - 0.00012 22.3 0.3 0.027 14.6 0.0 2.5 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD PF00270.29 gi|325968256|ref|YP_004244448.1| - 0.00035 20.4 0.1 0.0011 18.7 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase SH3_2 PF07653.17 gi|325968256|ref|YP_004244448.1| - 0.034 13.8 0.0 0.32 10.7 0.0 2.7 2 0 0 2 2 2 0 Variant SH3 domain bact-PGI_C PF10432.9 gi|325968258|ref|YP_004244450.1| - 9e-31 107.0 0.0 1.2e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|325968258|ref|YP_004244450.1| - 6.6e-07 29.2 0.1 6.3e-06 26.1 0.0 2.4 3 0 0 3 3 3 1 SIS domain SIS_2 PF13580.6 gi|325968258|ref|YP_004244450.1| - 0.0064 16.5 0.0 0.02 14.9 0.0 1.8 2 0 0 2 2 2 1 SIS domain Aminotran_4 PF01063.19 gi|325968259|ref|YP_004244451.1| - 9.6e-44 149.9 0.0 1.1e-43 149.6 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV Fe_dep_repr_C PF02742.15 gi|325968260|ref|YP_004244452.1| - 7.9e-21 73.9 0.0 2.4e-20 72.4 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain TrmB PF01978.19 gi|325968260|ref|YP_004244452.1| - 1.6e-05 24.7 0.0 3.2e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|325968260|ref|YP_004244452.1| - 0.0019 17.9 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_IclR PF09339.10 gi|325968260|ref|YP_004244452.1| - 0.0038 17.0 0.0 0.011 15.5 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|325968260|ref|YP_004244452.1| - 0.0048 17.1 0.1 0.011 16.0 0.0 1.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain RuvB_C PF05491.13 gi|325968260|ref|YP_004244452.1| - 0.0055 16.6 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|325968260|ref|YP_004244452.1| - 0.0063 16.5 0.0 0.0084 16.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HemN_C PF06969.16 gi|325968260|ref|YP_004244452.1| - 0.014 15.5 0.0 0.16 12.0 0.0 2.1 2 0 0 2 2 2 0 HemN C-terminal domain DUF4423 PF14394.6 gi|325968260|ref|YP_004244452.1| - 0.018 14.8 0.0 0.52 10.0 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) MotA_activ PF09114.10 gi|325968260|ref|YP_004244452.1| - 0.019 15.1 0.1 0.062 13.4 0.1 1.8 1 1 0 1 1 1 0 Transcription factor MotA, activation domain HTH_27 PF13463.6 gi|325968260|ref|YP_004244452.1| - 0.026 15.0 0.0 0.049 14.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain IF2_N PF04760.15 gi|325968260|ref|YP_004244452.1| - 0.028 14.3 0.1 16 5.4 0.1 3.4 2 1 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region MarR PF01047.22 gi|325968260|ref|YP_004244452.1| - 0.058 13.3 0.0 0.092 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.7 gi|325968260|ref|YP_004244452.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family SpoU_sub_bind PF08032.12 gi|325968260|ref|YP_004244452.1| - 0.11 12.8 0.0 5.1 7.4 0.0 2.2 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding Nramp PF01566.18 gi|325968261|ref|YP_004244453.1| - 6.5e-41 140.5 30.9 8.2e-41 140.2 30.9 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein MFS_1 PF07690.16 gi|325968262|ref|YP_004244454.1| - 4.3e-25 88.4 47.2 4e-16 58.9 17.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|325968262|ref|YP_004244454.1| - 3.1e-08 32.9 0.0 1.2e-07 30.9 0.0 2.2 1 1 0 1 1 1 1 MFS_1 like family Menin PF05053.13 gi|325968262|ref|YP_004244454.1| - 0.29 9.5 0.7 0.39 9.0 0.7 1.1 1 0 0 1 1 1 0 Menin Pro-kuma_activ PF09286.11 gi|325968263|ref|YP_004244455.1| - 0.0034 17.7 0.0 0.0078 16.5 0.0 1.5 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|325968263|ref|YP_004244455.1| - 0.014 14.7 0.0 0.066 12.5 0.0 1.9 1 1 0 1 1 1 0 Subtilase family MarC PF01914.17 gi|325968264|ref|YP_004244456.1| - 2.2e-31 108.9 21.2 2.8e-31 108.5 21.2 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein MazE_antitoxin PF04014.18 gi|325968265|ref|YP_004244457.1| - 3e-08 33.4 0.2 0.00028 20.7 0.0 2.5 2 1 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325968265|ref|YP_004244457.1| - 0.0071 16.8 0.0 1.8 9.0 0.0 2.2 1 1 1 2 2 2 2 prlF antitoxin for toxin YhaV_toxin Ribosomal_L40e PF01020.17 gi|325968266|ref|YP_004244458.1| - 2.2e-07 30.7 1.6 2.8e-07 30.3 1.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zf-RanBP PF00641.18 gi|325968266|ref|YP_004244458.1| - 3.2e-06 26.3 2.6 3.7e-06 26.1 2.6 1.1 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|325968266|ref|YP_004244458.1| - 0.0048 16.9 3.0 0.0066 16.4 3.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|325968266|ref|YP_004244458.1| - 0.0065 16.2 4.8 0.0091 15.7 4.8 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|325968266|ref|YP_004244458.1| - 0.0067 16.4 0.3 0.0077 16.2 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|325968266|ref|YP_004244458.1| - 0.0084 16.0 1.1 0.01 15.7 1.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_C2H2_13 PF18508.1 gi|325968266|ref|YP_004244458.1| - 0.04 13.5 0.1 0.074 12.6 0.1 1.4 1 0 0 1 1 1 0 Zinc finger domain zf-ribbon_3 PF13248.6 gi|325968266|ref|YP_004244458.1| - 0.072 12.5 3.7 0.11 12.0 3.7 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|325968266|ref|YP_004244458.1| - 1.6 8.5 7.2 0.54 10.0 0.7 1.9 1 1 1 2 2 2 0 Rubredoxin metal binding domain DUF1965 PF09248.10 gi|325968267|ref|YP_004244459.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) Phos_pyr_kin PF08543.12 gi|325968268|ref|YP_004244460.1| - 2.2e-93 312.2 0.0 2.8e-93 311.8 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|325968268|ref|YP_004244460.1| - 9.9e-66 220.4 0.0 2e-65 219.4 0.0 1.5 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|325968268|ref|YP_004244460.1| - 2.7e-12 46.6 0.0 4e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Tape_meas_lam_C PF09718.10 gi|325968269|ref|YP_004244461.1| - 0.13 12.4 1.8 0.2 11.8 1.8 1.3 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) TrbC PF04956.13 gi|325968269|ref|YP_004244461.1| - 0.6 10.4 9.4 0.55 10.5 0.5 2.4 1 1 1 2 2 2 0 TrbC/VIRB2 family SRP19 PF01922.17 gi|325968271|ref|YP_004244463.1| - 7.2e-20 71.7 0.0 8.4e-20 71.5 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.22 gi|325968272|ref|YP_004244464.1| - 1.9e-27 96.1 0.6 2.4e-27 95.8 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e Fer4_8 PF13183.6 gi|325968273|ref|YP_004244465.1| - 5e-12 46.1 0.9 5e-12 46.1 0.9 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968273|ref|YP_004244465.1| - 1.3e-09 38.4 1.6 1.3e-09 38.4 1.6 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968273|ref|YP_004244465.1| - 2.4e-09 37.7 1.6 2.4e-09 37.7 1.6 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|325968273|ref|YP_004244465.1| - 1e-08 35.3 0.3 4.7e-08 33.1 0.2 2.1 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|325968273|ref|YP_004244465.1| - 8.5e-08 32.2 2.9 8.5e-08 32.2 2.9 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968273|ref|YP_004244465.1| - 2.8e-07 30.1 12.1 6.3e-05 22.6 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|325968273|ref|YP_004244465.1| - 5.8e-06 26.2 16.9 9.7e-05 22.3 1.0 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|325968273|ref|YP_004244465.1| - 1.5e-05 25.8 5.3 1.5e-05 25.8 5.3 2.3 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|325968273|ref|YP_004244465.1| - 3.3e-05 24.0 5.5 0.034 14.3 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968273|ref|YP_004244465.1| - 0.00018 21.5 10.6 0.00018 21.5 10.6 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968273|ref|YP_004244465.1| - 0.00027 20.8 2.2 0.00027 20.8 2.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|325968273|ref|YP_004244465.1| - 0.00064 20.5 6.6 0.016 16.0 0.1 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325968273|ref|YP_004244465.1| - 0.00099 19.2 11.0 0.0081 16.3 0.4 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325968273|ref|YP_004244465.1| - 0.0041 18.0 16.7 0.11 13.5 5.0 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Secapin PF17521.2 gi|325968273|ref|YP_004244465.1| - 0.02 14.7 0.0 0.093 12.5 0.0 2.1 2 0 0 2 2 2 0 Honey bee peptides Fer4_4 PF12800.7 gi|325968273|ref|YP_004244465.1| - 0.021 15.3 16.0 0.031 14.8 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain HydF_tetramer PF18133.1 gi|325968273|ref|YP_004244465.1| - 0.087 12.6 2.5 4.2 7.2 0.2 3.7 3 1 2 5 5 5 0 Hydrogen maturase F tetramerization domain Fer4_15 PF13459.6 gi|325968273|ref|YP_004244465.1| - 0.39 11.5 3.0 0.98 10.2 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|325968273|ref|YP_004244465.1| - 0.75 10.4 8.9 2.9 8.5 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Ta0938 PF11494.8 gi|325968275|ref|YP_004244467.1| - 1.2e-15 57.6 2.9 2e-10 40.9 0.3 2.1 1 1 1 2 2 2 2 Ta0938 Zn_ribbon_recom PF13408.6 gi|325968275|ref|YP_004244467.1| - 0.049 14.1 0.6 0.049 14.1 0.6 1.8 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S8 PF00410.19 gi|325968276|ref|YP_004244468.1| - 9.5e-25 87.0 0.0 1.3e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Peptidase_S9 PF00326.21 gi|325968277|ref|YP_004244469.1| - 2.7e-56 190.4 0.0 4.2e-56 189.8 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|325968277|ref|YP_004244469.1| - 6.2e-09 35.9 0.1 1.5e-07 31.4 0.1 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|325968277|ref|YP_004244469.1| - 2.6e-08 33.8 0.0 0.00045 19.9 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.12 gi|325968277|ref|YP_004244469.1| - 2.7e-07 29.6 0.0 2e-05 23.5 0.0 2.3 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|325968277|ref|YP_004244469.1| - 1e-05 24.9 0.1 0.027 13.7 0.1 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|325968277|ref|YP_004244469.1| - 0.00063 19.4 0.0 0.002 17.7 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|325968277|ref|YP_004244469.1| - 0.0058 15.8 0.1 0.65 9.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) DPPIV_N PF00930.21 gi|325968277|ref|YP_004244469.1| - 0.0059 15.4 0.0 0.015 14.1 0.0 1.6 1 0 0 1 1 1 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_6 PF12697.7 gi|325968277|ref|YP_004244469.1| - 0.0069 17.0 0.0 0.012 16.2 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family DUF5050 PF16472.5 gi|325968277|ref|YP_004244469.1| - 0.014 14.6 0.0 0.054 12.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF5050) PD40 PF07676.12 gi|325968277|ref|YP_004244469.1| - 0.035 14.0 0.4 8.4 6.5 0.0 4.2 4 0 0 4 4 4 0 WD40-like Beta Propeller Repeat PGAP1 PF07819.13 gi|325968277|ref|YP_004244469.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein FSH1 PF03959.13 gi|325968277|ref|YP_004244469.1| - 0.22 11.2 0.0 0.43 10.2 0.0 1.5 1 0 0 1 1 1 0 Serine hydrolase (FSH1) STE3 PF02076.15 gi|325968278|ref|YP_004244470.1| - 2.1 7.5 11.3 2.5 7.2 11.3 1.0 1 0 0 1 1 1 0 Pheromone A receptor Ribosomal_S28e PF01200.18 gi|325968279|ref|YP_004244471.1| - 1.8e-29 101.5 5.5 2e-29 101.3 5.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e NOP5NT PF08156.13 gi|325968279|ref|YP_004244471.1| - 0.2 12.1 0.0 0.42 11.0 0.0 1.4 2 0 0 2 2 2 0 NOP5NT (NUC127) domain Ribosomal_L7Ae PF01248.26 gi|325968280|ref|YP_004244472.1| - 1.6e-30 104.7 0.1 2.3e-30 104.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|325968280|ref|YP_004244472.1| - 7e-05 22.6 0.1 0.00012 21.9 0.1 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|325968280|ref|YP_004244472.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 RNase P subunit Pop3 Ribosomal_S19 PF00203.21 gi|325968281|ref|YP_004244473.1| - 1.1e-28 98.9 0.2 2.2e-28 98.0 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S19 EutB PF06751.11 gi|325968281|ref|YP_004244473.1| - 0.013 14.3 2.6 0.033 13.0 2.6 1.5 1 1 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) AMP-binding PF00501.28 gi|325968282|ref|YP_004244474.1| - 8.4e-49 166.3 0.0 1.1e-48 165.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|325968282|ref|YP_004244474.1| - 3.9e-12 45.9 0.3 1.6e-11 43.9 0.3 2.2 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|325968282|ref|YP_004244474.1| - 1.5e-05 25.9 0.2 4.7e-05 24.3 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Pilin_PilX PF11530.8 gi|325968282|ref|YP_004244474.1| - 0.057 13.3 0.1 0.18 11.7 0.0 1.8 2 0 0 2 2 2 0 Minor type IV pilin, PilX 4HBT PF03061.22 gi|325968284|ref|YP_004244476.1| - 5.2e-11 42.8 0.3 3e-10 40.3 0.1 2.0 2 0 0 2 2 2 1 Thioesterase superfamily DUF4442 PF14539.6 gi|325968284|ref|YP_004244476.1| - 8.5e-06 25.9 0.3 1.1e-05 25.6 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) DUF3806 PF12713.7 gi|325968284|ref|YP_004244476.1| - 0.011 15.5 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3806) DUF1256 PF06866.11 gi|325968284|ref|YP_004244476.1| - 0.093 12.1 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1256) 4HBT_3 PF13622.6 gi|325968284|ref|YP_004244476.1| - 0.14 12.4 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Glyco_hydro_38N PF01074.22 gi|325968285|ref|YP_004244477.1| - 7.1e-62 209.4 0.0 1e-61 208.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|325968285|ref|YP_004244477.1| - 7e-43 147.2 0.0 9.9e-43 146.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|325968285|ref|YP_004244477.1| - 2.2e-12 47.0 0.0 4.3e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|325968285|ref|YP_004244477.1| - 0.023 14.8 0.0 0.064 13.4 0.0 1.8 1 0 0 1 1 1 0 Glycosyl hydrolases family 38 C-terminal beta sandwich domain OrfB_IS605 PF01385.19 gi|325968286|ref|YP_004244478.1| - 4.2e-34 117.4 0.4 1.2e-33 115.9 0.0 1.9 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|325968286|ref|YP_004244478.1| - 2.2e-18 65.9 0.1 4.1e-18 65.1 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|325968286|ref|YP_004244478.1| - 0.0026 18.1 0.0 0.0056 17.1 0.0 1.6 1 0 0 1 1 1 1 Holliday junction resolvase LSM PF01423.22 gi|325968287|ref|YP_004244479.1| - 2.1e-20 72.2 0.9 2.3e-20 72.0 0.9 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|325968287|ref|YP_004244479.1| - 0.0098 16.0 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|325968287|ref|YP_004244479.1| - 0.011 15.4 0.1 0.015 15.0 0.1 1.2 1 0 0 1 1 1 0 Hfq protein Ribosomal_L37e PF01907.19 gi|325968288|ref|YP_004244480.1| - 4.8e-21 74.7 9.9 5.4e-21 74.5 9.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|325968288|ref|YP_004244480.1| - 0.013 15.5 0.9 0.018 15.1 0.9 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF2752 PF10825.8 gi|325968288|ref|YP_004244480.1| - 0.028 14.5 2.5 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Mu-like_Com PF10122.9 gi|325968288|ref|YP_004244480.1| - 0.29 10.6 2.9 0.43 10.1 2.9 1.4 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-ribbon_3 PF13248.6 gi|325968288|ref|YP_004244480.1| - 0.32 10.5 4.8 0.43 10.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|325968288|ref|YP_004244480.1| - 2.7 7.8 6.6 13 5.6 6.6 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Lactamase_B PF00753.27 gi|325968289|ref|YP_004244481.1| - 0.015 15.3 0.0 0.032 14.3 0.0 1.5 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|325968289|ref|YP_004244481.1| - 0.023 14.6 0.0 0.034 14.1 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|325968289|ref|YP_004244481.1| - 0.098 12.2 0.0 0.39 10.2 0.0 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain zf-4CXXC_R1 PF10497.9 gi|325968291|ref|YP_004244483.1| - 0.073 13.3 0.1 0.08 13.2 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 HypA PF01155.19 gi|325968291|ref|YP_004244483.1| - 0.075 13.1 0.1 0.079 13.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rad50_zn_hook PF04423.14 gi|325968291|ref|YP_004244483.1| - 0.089 12.7 0.1 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Rad50 zinc hook motif Lar_restr_allev PF14354.6 gi|325968291|ref|YP_004244483.1| - 0.092 13.1 0.7 0.73 10.3 0.0 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|325968291|ref|YP_004244483.1| - 0.093 12.9 1.9 0.29 11.3 1.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|325968291|ref|YP_004244483.1| - 0.24 11.9 3.0 2.6 8.7 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF354 PF04007.12 gi|325968292|ref|YP_004244484.1| - 7.6e-46 156.7 0.0 8.9e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_9 PF01075.17 gi|325968292|ref|YP_004244484.1| - 0.11 11.8 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) Epimerase PF01370.21 gi|325968293|ref|YP_004244485.1| - 8.4e-40 136.7 0.0 1e-39 136.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|325968293|ref|YP_004244485.1| - 7.1e-39 134.1 0.0 1.6e-37 129.7 0.0 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|325968293|ref|YP_004244485.1| - 1.4e-18 67.0 0.0 1.8e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|325968293|ref|YP_004244485.1| - 1.5e-10 40.5 0.0 4.5e-10 39.0 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|325968293|ref|YP_004244485.1| - 4.9e-09 35.7 0.0 2.3e-06 27.0 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|325968293|ref|YP_004244485.1| - 1.2e-05 24.6 0.0 0.00091 18.4 0.0 3.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Glycos_transf_4 PF00953.21 gi|325968294|ref|YP_004244486.1| - 8.1e-25 87.7 24.2 8.1e-25 87.7 24.2 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 4 DUF4287 PF14117.6 gi|325968295|ref|YP_004244487.1| - 0.0016 18.5 0.0 0.0027 17.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4287) DUF4974 PF16344.5 gi|325968295|ref|YP_004244487.1| - 0.029 14.4 0.6 0.076 13.0 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) Endonuclease_5 PF04493.14 gi|325968295|ref|YP_004244487.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 Endonuclease V Amidohydro_3 PF07969.11 gi|325968296|ref|YP_004244488.1| - 3.6e-19 69.6 0.0 1.1e-15 58.1 0.0 2.2 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|325968296|ref|YP_004244488.1| - 8.9e-14 51.5 0.0 7.3e-13 48.5 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family vATP-synt_AC39 PF01992.16 gi|325968296|ref|YP_004244488.1| - 0.043 13.3 0.0 0.062 12.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase (C/AC39) subunit tRNA-synt_1c PF00749.21 gi|325968297|ref|YP_004244489.1| - 4.3e-62 209.8 0.0 6.4e-62 209.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|325968297|ref|YP_004244489.1| - 1e-29 103.6 0.2 2.1e-29 102.6 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain PALP PF00291.25 gi|325968298|ref|YP_004244490.1| - 1.7e-65 221.3 0.0 2e-65 221.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Rubredoxin_2 PF18073.1 gi|325968298|ref|YP_004244490.1| - 2.7e-05 23.8 6.8 5.3e-05 22.9 6.8 1.5 1 0 0 1 1 1 1 Rubredoxin metal binding domain HypA PF01155.19 gi|325968298|ref|YP_004244490.1| - 0.00076 19.5 0.0 0.0036 17.3 0.0 1.9 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|325968298|ref|YP_004244490.1| - 0.00084 19.4 0.1 0.0015 18.6 0.1 1.4 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|325968298|ref|YP_004244490.1| - 0.018 14.6 0.5 2.9 7.5 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|325968298|ref|YP_004244490.1| - 0.02 14.8 0.7 0.041 13.8 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|325968298|ref|YP_004244490.1| - 0.03 14.0 1.6 0.089 12.5 1.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|325968298|ref|YP_004244490.1| - 0.096 12.4 1.0 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|325968298|ref|YP_004244490.1| - 0.11 12.4 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF3145 PF11343.8 gi|325968298|ref|YP_004244490.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3145) zf-ribbon_3 PF13248.6 gi|325968298|ref|YP_004244490.1| - 0.15 11.5 2.2 7.2 6.2 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|325968298|ref|YP_004244490.1| - 0.39 10.6 8.2 2.6 8.0 1.0 2.3 1 1 1 2 2 2 0 SprT-like zinc ribbon domain zf_UBZ PF18439.1 gi|325968298|ref|YP_004244490.1| - 2.1 8.0 3.4 6.1 6.5 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_10 PF10058.9 gi|325968298|ref|YP_004244490.1| - 4.1 7.2 4.5 19 5.1 0.5 2.3 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Aminotran_1_2 PF00155.21 gi|325968299|ref|YP_004244491.1| - 3.7e-51 174.4 0.0 4.4e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|325968299|ref|YP_004244491.1| - 0.0002 20.8 0.0 0.00034 20.0 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family UPF0154 PF03672.13 gi|325968299|ref|YP_004244491.1| - 0.0058 16.6 0.0 0.99 9.5 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0154) Cys_Met_Meta_PP PF01053.20 gi|325968299|ref|YP_004244491.1| - 0.0071 14.9 0.0 0.0099 14.5 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|325968299|ref|YP_004244491.1| - 0.021 13.7 0.0 0.029 13.2 0.0 1.2 1 0 0 1 1 1 0 Allinase Lyase_aromatic PF00221.19 gi|325968300|ref|YP_004244492.1| - 6.3e-144 480.1 4.1 7.2e-144 479.9 4.1 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Rib_5-P_isom_A PF06026.14 gi|325968301|ref|YP_004244493.1| - 1e-57 194.5 0.0 1.3e-57 194.2 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|325968301|ref|YP_004244493.1| - 0.0012 18.7 0.1 0.054 13.4 0.1 2.1 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|325968301|ref|YP_004244493.1| - 0.0027 16.9 0.0 0.47 9.5 0.0 2.2 2 0 0 2 2 2 2 Putative sugar-binding domain Pterin_bind PF00809.22 gi|325968302|ref|YP_004244494.1| - 9.1e-58 195.8 4.0 6.9e-47 160.2 1.3 2.0 2 0 0 2 2 2 2 Pterin binding enzyme DUF2683 PF10884.8 gi|325968302|ref|YP_004244494.1| - 0.036 14.3 0.1 0.091 13.0 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2683) LysR_substrate PF03466.20 gi|325968302|ref|YP_004244494.1| - 0.11 11.8 0.0 0.54 9.6 0.0 2.0 2 0 0 2 2 2 0 LysR substrate binding domain Phage_rep_org_N PF09681.10 gi|325968303|ref|YP_004244495.1| - 0.033 14.1 0.0 0.045 13.7 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) SepF PF04472.12 gi|325968303|ref|YP_004244495.1| - 0.041 14.2 0.0 0.1 12.9 0.0 1.7 1 1 1 2 2 2 0 Cell division protein SepF MarR_2 PF12802.7 gi|325968303|ref|YP_004244495.1| - 0.062 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|325968303|ref|YP_004244495.1| - 0.062 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|325968303|ref|YP_004244495.1| - 0.074 13.0 0.1 0.16 11.9 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Na_Ca_ex PF01699.24 gi|325968304|ref|YP_004244496.1| - 1.9e-18 66.8 40.8 1.2e-12 48.1 18.0 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Sod_Fe_C PF02777.18 gi|325968305|ref|YP_004244497.1| - 3.8e-29 100.9 0.0 5.6e-29 100.3 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|325968305|ref|YP_004244497.1| - 1.2e-28 99.4 0.3 1.2e-28 99.4 0.3 2.3 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Arginase PF00491.21 gi|325968306|ref|YP_004244498.1| - 3.3e-59 200.7 0.0 4e-59 200.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family PIN PF01850.21 gi|325968307|ref|YP_004244499.1| - 1.1e-12 48.5 0.0 1.3e-12 48.3 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|325968307|ref|YP_004244499.1| - 0.012 15.9 0.0 0.24 11.7 0.0 2.0 1 1 0 1 1 1 0 PIN like domain MazE_antitoxin PF04014.18 gi|325968308|ref|YP_004244500.1| - 3.1e-15 55.7 0.9 4.9e-15 55.0 0.9 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325968308|ref|YP_004244500.1| - 3.7e-05 24.1 0.1 4.3e-05 23.9 0.1 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF4954 PF16314.5 gi|325968308|ref|YP_004244500.1| - 0.041 12.0 0.1 0.042 12.0 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Cons_hypoth698 PF03601.14 gi|325968309|ref|YP_004244501.1| - 1.7e-21 76.4 19.7 1.7e-21 76.4 19.7 2.3 2 1 0 2 2 2 1 Conserved hypothetical protein 698 Deltameth_res PF16020.5 gi|325968309|ref|YP_004244501.1| - 0.41 10.6 2.4 7.4 6.5 0.3 3.5 2 0 0 2 2 2 0 Deltamethrin resistance Radical_SAM PF04055.21 gi|325968310|ref|YP_004244502.1| - 5.3e-14 52.9 0.0 1.1e-13 51.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|325968310|ref|YP_004244502.1| - 7.3e-13 48.8 1.0 2.6e-12 47.1 1.0 2.0 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|325968310|ref|YP_004244502.1| - 0.00034 20.7 0.0 0.00091 19.4 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Urocanase_C PF17392.2 gi|325968311|ref|YP_004244503.1| - 1.9e-82 275.5 0.0 3.4e-82 274.6 0.0 1.4 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|325968311|ref|YP_004244503.1| - 3.9e-81 271.7 0.1 5.5e-81 271.2 0.1 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|325968311|ref|YP_004244503.1| - 5.9e-43 145.6 0.0 1.2e-42 144.6 0.0 1.4 1 0 0 1 1 1 1 Urocanase N-terminal domain ATPase_2 PF01637.18 gi|325968312|ref|YP_004244504.1| - 3.8e-09 36.8 0.0 4.1e-09 36.7 0.0 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|325968312|ref|YP_004244504.1| - 0.00063 19.8 0.0 0.0024 17.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|325968313|ref|YP_004244505.1| - 5.2e-06 26.6 0.1 5.5e-06 26.5 0.1 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|325968313|ref|YP_004244505.1| - 0.0009 19.7 0.0 0.00096 19.6 0.0 1.0 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|325968313|ref|YP_004244505.1| - 0.0048 16.9 0.0 0.0058 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|325968313|ref|YP_004244505.1| - 0.021 15.2 0.0 0.053 13.9 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) VIT1 PF01988.19 gi|325968316|ref|YP_004244508.1| - 2.9e-37 128.6 8.1 5.1e-37 127.8 8.1 1.4 1 0 0 1 1 1 1 VIT family Rubrerythrin PF02915.17 gi|325968316|ref|YP_004244508.1| - 3.5e-06 27.4 1.9 3.5e-06 27.4 1.9 1.6 2 0 0 2 2 2 1 Rubrerythrin DUF1700 PF08006.11 gi|325968316|ref|YP_004244508.1| - 0.014 14.9 0.8 0.014 14.9 0.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) Ribosomal_S13 PF00416.22 gi|325968316|ref|YP_004244508.1| - 0.26 11.7 0.1 0.26 11.7 0.1 2.3 3 0 0 3 3 3 0 Ribosomal protein S13/S18 DUF3042 PF11240.8 gi|325968316|ref|YP_004244508.1| - 0.49 10.5 4.5 0.88 9.6 1.0 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) DUF4781 PF16013.5 gi|325968316|ref|YP_004244508.1| - 2.1 7.0 5.6 0.18 10.6 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4781) Acyl-CoA_dh_1 PF00441.24 gi|325968317|ref|YP_004244509.1| - 3.1e-40 137.8 5.3 4.6e-40 137.3 5.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|325968317|ref|YP_004244509.1| - 2.5e-33 115.1 0.0 1.2e-32 112.9 0.0 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|325968317|ref|YP_004244509.1| - 2.1e-25 88.7 0.0 4.4e-25 87.7 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|325968317|ref|YP_004244509.1| - 3.2e-20 72.7 1.4 4.7e-20 72.2 1.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|325968317|ref|YP_004244509.1| - 0.041 13.5 0.0 0.093 12.4 0.0 1.7 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Pollen_allerg_2 PF01620.16 gi|325968317|ref|YP_004244509.1| - 0.13 12.4 1.0 0.22 11.7 1.0 1.3 1 0 0 1 1 1 0 Ribonuclease (pollen allergen) CN_hydrolase PF00795.22 gi|325968318|ref|YP_004244510.1| - 1.3e-18 67.3 0.0 1.7e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Radical_SAM PF04055.21 gi|325968319|ref|YP_004244511.1| - 1.7e-23 83.8 0.0 4.8e-23 82.4 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|325968319|ref|YP_004244511.1| - 5e-22 77.7 0.1 1.2e-21 76.5 0.1 1.7 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_10 PF13673.7 gi|325968319|ref|YP_004244511.1| - 0.00048 20.1 0.0 0.0012 18.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|325968319|ref|YP_004244511.1| - 0.00069 19.8 0.1 0.0016 18.7 0.1 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Helicase_C_2 PF13307.6 gi|325968320|ref|YP_004244512.1| - 1.1e-24 87.6 0.0 2.2e-24 86.6 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|325968320|ref|YP_004244512.1| - 1.1e-22 80.4 0.7 1.9e-22 79.8 0.7 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|325968320|ref|YP_004244512.1| - 2.1e-09 37.6 0.0 5.1e-06 26.6 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit HBB PF06777.11 gi|325968320|ref|YP_004244512.1| - 5e-09 36.1 0.2 2.2e-08 34.0 0.2 2.1 1 1 0 1 1 1 1 Helical and beta-bridge domain DEAD PF00270.29 gi|325968320|ref|YP_004244512.1| - 6.1e-06 26.1 0.0 0.0043 16.8 0.0 2.8 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|325968320|ref|YP_004244512.1| - 0.0015 18.8 0.1 3.3 8.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|325968320|ref|YP_004244512.1| - 0.0018 17.7 0.2 0.021 14.3 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|325968320|ref|YP_004244512.1| - 0.012 15.4 0.0 0.053 13.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|325968320|ref|YP_004244512.1| - 0.014 15.0 0.0 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|325968320|ref|YP_004244512.1| - 0.03 14.7 0.1 0.22 11.9 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain Terminase_6 PF03237.15 gi|325968320|ref|YP_004244512.1| - 0.069 12.8 0.0 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Terminase-like family DUF2972 PF11186.8 gi|325968320|ref|YP_004244512.1| - 0.13 12.1 2.7 0.28 11.1 2.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2972) VirB3 PF05101.13 gi|325968321|ref|YP_004244513.1| - 0.0061 16.8 0.8 0.011 15.9 0.8 1.4 1 0 0 1 1 1 1 Type IV secretory pathway, VirB3-like protein DUF973 PF06157.11 gi|325968321|ref|YP_004244513.1| - 0.018 14.1 0.7 0.027 13.6 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF5392 PF17370.2 gi|325968321|ref|YP_004244513.1| - 0.089 12.9 1.8 0.14 12.2 1.8 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5392) DUF2207 PF09972.9 gi|325968321|ref|YP_004244513.1| - 1.8 7.3 3.5 2.8 6.6 3.5 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Cadherin_C_2 PF16492.5 gi|325968321|ref|YP_004244513.1| - 5.3 7.9 5.6 24 5.7 5.7 2.1 1 1 0 1 1 1 0 Cadherin cytoplasmic C-terminal Topoisom_bac PF01131.20 gi|325968322|ref|YP_004244514.1| - 1.6e-105 353.5 0.0 1.9e-105 353.2 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|325968322|ref|YP_004244514.1| - 1e-15 57.8 0.1 4.4e-15 55.8 0.0 2.1 2 0 0 2 2 2 1 Toprim domain TENA_THI-4 PF03070.16 gi|325968323|ref|YP_004244515.1| - 2.9e-47 161.2 0.0 3.3e-47 161.0 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family adh_short_C2 PF13561.6 gi|325968324|ref|YP_004244516.1| - 1.3e-61 208.1 2.2 1.6e-61 207.8 2.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|325968324|ref|YP_004244516.1| - 3.2e-57 193.2 1.8 4.2e-57 192.8 1.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|325968324|ref|YP_004244516.1| - 1.5e-11 44.6 0.2 1.9e-11 44.2 0.2 1.1 1 0 0 1 1 1 1 KR domain DUF1776 PF08643.10 gi|325968324|ref|YP_004244516.1| - 6.1e-06 25.8 0.1 7.8e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 Fungal family of unknown function (DUF1776) Radical_SAM PF04055.21 gi|325968325|ref|YP_004244517.1| - 3.5e-21 76.3 0.0 1.9e-20 73.9 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily TRAM PF01938.20 gi|325968325|ref|YP_004244517.1| - 0.041 13.9 0.7 2.5 8.2 0.0 3.2 3 0 0 3 3 3 0 TRAM domain HTH_5 PF01022.20 gi|325968326|ref|YP_004244518.1| - 2.3e-09 37.0 0.0 3.5e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|325968326|ref|YP_004244518.1| - 6.2e-08 32.6 0.0 1e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|325968326|ref|YP_004244518.1| - 8.3e-07 28.7 0.0 1.3e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|325968326|ref|YP_004244518.1| - 4e-05 23.4 0.0 6.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|325968326|ref|YP_004244518.1| - 0.0001 22.2 0.0 0.00021 21.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|325968326|ref|YP_004244518.1| - 0.00014 21.3 0.0 0.00026 20.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|325968326|ref|YP_004244518.1| - 0.00061 19.7 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|325968326|ref|YP_004244518.1| - 0.0027 17.5 0.0 0.0059 16.5 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|325968326|ref|YP_004244518.1| - 0.087 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Lactamase_B_2 PF12706.7 gi|325968328|ref|YP_004244520.1| - 2.8e-16 59.6 0.1 3.5e-14 52.8 0.1 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|325968328|ref|YP_004244520.1| - 1.1e-13 51.7 1.1 2.7e-11 43.9 0.3 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|325968328|ref|YP_004244520.1| - 7.1e-06 25.6 0.0 2e-05 24.2 0.0 1.7 2 0 0 2 2 2 1 tRNase Z endonuclease RrnaAD PF00398.20 gi|325968329|ref|YP_004244521.1| - 1.2e-44 152.3 0.0 1.4e-44 152.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|325968329|ref|YP_004244521.1| - 5.5e-08 33.4 0.0 9.7e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|325968329|ref|YP_004244521.1| - 3.3e-06 27.6 0.0 6.6e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|325968329|ref|YP_004244521.1| - 5.2e-06 26.1 0.0 8.4e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|325968329|ref|YP_004244521.1| - 6.2e-06 26.1 0.0 9.6e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325968329|ref|YP_004244521.1| - 0.00032 20.6 0.0 0.00042 20.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|325968329|ref|YP_004244521.1| - 0.00057 19.4 0.2 0.00086 18.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|325968329|ref|YP_004244521.1| - 0.0012 18.6 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|325968329|ref|YP_004244521.1| - 0.0037 16.8 0.1 0.0072 15.8 0.1 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|325968329|ref|YP_004244521.1| - 0.005 16.8 0.0 0.0081 16.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|325968329|ref|YP_004244521.1| - 0.018 14.7 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|325968329|ref|YP_004244521.1| - 0.02 15.6 0.0 0.043 14.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF43 PF01861.16 gi|325968329|ref|YP_004244521.1| - 0.072 12.3 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain NodS PF05401.11 gi|325968329|ref|YP_004244521.1| - 0.1 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) AA_kinase PF00696.28 gi|325968330|ref|YP_004244522.1| - 4.8e-26 91.8 0.0 1e-25 90.7 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family Hydrolase_6 PF13344.6 gi|325968330|ref|YP_004244522.1| - 0.034 14.3 0.0 0.077 13.1 0.0 1.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF4259 PF14078.6 gi|325968331|ref|YP_004244523.1| - 0.0087 16.8 0.0 0.016 15.9 0.0 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4259) DUF4168 PF13767.6 gi|325968331|ref|YP_004244523.1| - 0.027 15.6 0.2 0.058 14.6 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4168) Cren7 PF11520.8 gi|325968332|ref|YP_004244524.1| - 5.2e-17 61.5 0.8 5.7e-17 61.4 0.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DapB_N PF01113.20 gi|325968333|ref|YP_004244525.1| - 6e-07 29.6 0.2 1e-06 28.9 0.2 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|325968333|ref|YP_004244525.1| - 0.0012 19.7 0.0 0.0025 18.7 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|325968333|ref|YP_004244525.1| - 0.0051 17.5 1.2 0.0085 16.8 0.5 1.8 2 0 0 2 2 2 1 CoA binding domain CENP-B_N PF04218.13 gi|325968333|ref|YP_004244525.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain Gp_dh_N PF00044.24 gi|325968333|ref|YP_004244525.1| - 0.018 15.4 0.4 0.78 10.1 0.3 2.5 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|325968333|ref|YP_004244525.1| - 0.092 13.3 0.5 1 10.0 0.3 2.5 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ADH_zinc_N PF00107.26 gi|325968333|ref|YP_004244525.1| - 0.094 12.7 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase OppC_N PF12911.7 gi|325968334|ref|YP_004244526.1| - 0.13 12.2 11.0 0.053 13.5 1.7 3.2 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C TPR_19 PF14559.6 gi|325968334|ref|YP_004244526.1| - 0.13 12.8 0.0 19 5.9 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Protocadherin PF08374.11 gi|325968334|ref|YP_004244526.1| - 2.6 8.0 7.7 0.15 12.0 1.4 1.9 1 1 1 2 2 2 0 Protocadherin Molybdopterin PF00384.22 gi|325968335|ref|YP_004244527.1| - 2.9e-91 306.6 0.0 3.6e-91 306.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|325968335|ref|YP_004244527.1| - 1e-23 83.4 0.0 2.3e-23 82.3 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|325968335|ref|YP_004244527.1| - 1.2e-15 57.2 1.1 1.2e-15 57.2 1.1 2.6 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|325968335|ref|YP_004244527.1| - 5.6e-15 55.2 0.2 5.6e-15 55.2 0.2 1.9 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|325968335|ref|YP_004244527.1| - 3.7e-08 33.2 0.3 3.7e-08 33.2 0.3 2.3 3 1 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_6 PF12837.7 gi|325968335|ref|YP_004244527.1| - 2.1e-07 30.7 21.7 0.00026 20.9 3.6 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|325968335|ref|YP_004244527.1| - 1e-05 25.2 25.9 1.1e-05 25.1 3.8 3.4 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968335|ref|YP_004244527.1| - 0.00011 22.2 9.8 0.00011 22.2 9.8 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968335|ref|YP_004244527.1| - 0.00018 21.6 17.5 0.0013 18.9 12.2 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968335|ref|YP_004244527.1| - 0.00025 21.1 12.7 0.00025 21.1 12.7 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968335|ref|YP_004244527.1| - 0.00054 20.4 8.9 0.18 12.4 0.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968335|ref|YP_004244527.1| - 0.001 19.6 13.2 0.001 19.6 13.2 3.1 2 1 2 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968335|ref|YP_004244527.1| - 0.0018 18.2 2.1 0.0018 18.2 2.1 3.9 5 0 0 5 5 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|325968335|ref|YP_004244527.1| - 0.0046 17.9 4.8 0.0046 17.9 4.8 3.3 4 0 0 4 4 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|325968335|ref|YP_004244527.1| - 0.014 15.9 8.4 0.014 15.9 8.4 2.6 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325968335|ref|YP_004244527.1| - 0.025 15.0 20.7 0.041 14.4 4.4 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer2_3 PF13085.6 gi|325968335|ref|YP_004244527.1| - 0.038 14.0 0.1 0.038 14.0 0.1 2.1 3 0 0 3 3 1 0 2Fe-2S iron-sulfur cluster binding domain DUF4350 PF14258.6 gi|325968335|ref|YP_004244527.1| - 0.065 13.7 0.0 0.31 11.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) Fer4_3 PF12798.7 gi|325968335|ref|YP_004244527.1| - 0.069 14.1 18.4 0.21 12.6 6.1 3.1 2 0 0 2 2 2 0 4Fe-4S binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|325968335|ref|YP_004244527.1| - 1.7 8.3 3.9 9.7 5.8 3.0 2.9 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_22 PF17179.4 gi|325968335|ref|YP_004244527.1| - 3.1 8.7 13.4 1.1 10.1 0.8 3.5 3 0 0 3 3 3 0 4Fe-4S dicluster domain Complex1_51K PF01512.17 gi|325968336|ref|YP_004244528.1| - 1.3e-28 99.8 0.0 2.2e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|325968336|ref|YP_004244528.1| - 1.2e-27 95.8 0.1 2.2e-27 94.9 0.1 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 2Fe-2S_thioredx PF01257.19 gi|325968336|ref|YP_004244528.1| - 3.9e-10 39.8 0.1 3.1e-09 36.8 0.1 2.1 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin SLBB PF10531.9 gi|325968336|ref|YP_004244528.1| - 0.00012 21.9 0.1 0.00025 20.8 0.1 1.6 1 0 0 1 1 1 1 SLBB domain Sigma70_r4 PF04545.16 gi|325968336|ref|YP_004244528.1| - 0.031 13.8 1.0 0.061 12.8 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 PIN PF01850.21 gi|325968338|ref|YP_004244530.1| - 7.1e-18 65.3 0.2 8e-18 65.1 0.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|325968338|ref|YP_004244530.1| - 0.01 16.3 0.5 0.025 15.1 0.5 1.6 1 1 0 1 1 1 0 PIN domain PIN_3 PF13470.6 gi|325968338|ref|YP_004244530.1| - 0.078 13.7 0.1 0.32 11.8 0.1 1.8 1 1 0 1 1 1 0 PIN domain MazE_antitoxin PF04014.18 gi|325968339|ref|YP_004244531.1| - 5.8e-11 42.0 0.8 1e-10 41.3 0.8 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PUA PF01472.20 gi|325968339|ref|YP_004244531.1| - 0.0041 17.1 0.2 0.0052 16.7 0.2 1.1 1 0 0 1 1 1 1 PUA domain PrlF_antitoxin PF15937.5 gi|325968339|ref|YP_004244531.1| - 0.0059 17.0 0.0 0.0071 16.8 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin SymE_toxin PF08845.10 gi|325968339|ref|YP_004244531.1| - 0.045 13.8 0.1 1 9.5 0.0 2.2 2 0 0 2 2 2 0 Toxin SymE, type I toxin-antitoxin system AbrB-like PF14250.6 gi|325968339|ref|YP_004244531.1| - 0.064 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 AbrB-like transcriptional regulator DUF771 PF05595.11 gi|325968339|ref|YP_004244531.1| - 0.078 13.0 0.3 0.11 12.5 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF771) HMD PF03201.16 gi|325968339|ref|YP_004244531.1| - 0.098 12.9 0.0 0.12 12.6 0.0 1.1 1 0 0 1 1 1 0 H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase Molydop_binding PF01568.21 gi|325968339|ref|YP_004244531.1| - 0.14 12.2 0.1 0.22 11.6 0.1 1.4 1 1 0 1 1 1 0 Molydopterin dinucleotide binding domain Asparaginase PF00710.20 gi|325968340|ref|YP_004244532.1| - 2.1e-56 190.5 0.1 3.3e-56 189.9 0.0 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|325968340|ref|YP_004244532.1| - 5.1e-35 120.1 0.0 4e-34 117.2 0.0 2.4 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|325968340|ref|YP_004244532.1| - 2e-18 65.4 0.7 5.5e-18 64.0 0.7 1.8 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|325968340|ref|YP_004244532.1| - 0.025 14.2 0.0 3 7.4 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein domain SfsA PF03749.13 gi|325968341|ref|YP_004244533.1| - 2.9e-41 140.6 0.0 4.4e-41 140.0 0.0 1.3 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|325968341|ref|YP_004244533.1| - 3.3e-11 43.2 0.0 6.2e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 SfsA N-terminal OB domain NucS PF01939.16 gi|325968341|ref|YP_004244533.1| - 0.011 15.1 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Endonuclease NucS DUF2079 PF09852.9 gi|325968342|ref|YP_004244534.1| - 7.4e-51 173.4 48.0 7.4e-51 173.4 48.0 1.5 2 0 0 2 2 2 1 Predicted membrane protein (DUF2079) YbgT_YccB PF08173.11 gi|325968342|ref|YP_004244534.1| - 4.6 7.5 10.3 2.3 8.4 3.4 3.0 2 0 0 2 2 2 0 Membrane bound YbgT-like protein MFS_1 PF07690.16 gi|325968343|ref|YP_004244535.1| - 8.4e-31 107.2 45.7 5.5e-17 61.7 18.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|325968343|ref|YP_004244535.1| - 0.4 8.9 22.3 0.47 8.7 2.6 3.5 2 2 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family DUF2530 PF10745.9 gi|325968343|ref|YP_004244535.1| - 1.2 9.4 5.1 0.56 10.5 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) DUF3834 PF12916.7 gi|325968344|ref|YP_004244536.1| - 3.6e-70 235.3 0.0 4.1e-70 235.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) CitMHS PF03600.16 gi|325968345|ref|YP_004244537.1| - 9.2e-45 153.1 18.4 9.2e-45 153.1 18.4 2.1 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|325968345|ref|YP_004244537.1| - 3.3e-13 49.5 45.3 1.4e-07 31.0 16.1 2.5 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|325968345|ref|YP_004244537.1| - 1.5e-10 40.7 0.5 3.3e-08 33.2 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain adh_short_C2 PF13561.6 gi|325968346|ref|YP_004244538.1| - 3.9e-62 209.9 1.0 5.1e-62 209.5 1.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|325968346|ref|YP_004244538.1| - 3.2e-52 176.8 0.8 4e-52 176.5 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|325968346|ref|YP_004244538.1| - 2.2e-13 50.5 0.1 2.9e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|325968346|ref|YP_004244538.1| - 1.4e-06 28.0 0.1 5.6e-06 26.0 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|325968346|ref|YP_004244538.1| - 2.1e-05 24.5 0.9 3.7e-05 23.7 0.9 1.7 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|325968346|ref|YP_004244538.1| - 0.00023 20.8 0.6 0.00056 19.5 0.4 1.7 2 0 0 2 2 2 1 NmrA-like family 3Beta_HSD PF01073.19 gi|325968346|ref|YP_004244538.1| - 0.00028 20.0 0.1 0.00043 19.4 0.1 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family LDcluster4 PF18306.1 gi|325968346|ref|YP_004244538.1| - 0.032 13.8 1.8 0.17 11.5 0.0 2.5 2 1 0 3 3 3 0 SLOG cluster4 family TrkA_N PF02254.18 gi|325968346|ref|YP_004244538.1| - 0.051 13.8 0.3 0.13 12.5 0.3 1.7 1 0 0 1 1 1 0 TrkA-N domain DSRB PF10781.9 gi|325968346|ref|YP_004244538.1| - 0.093 12.4 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 Dextransucrase DSRB CRS1_YhbY PF01985.21 gi|325968346|ref|YP_004244538.1| - 0.13 12.4 0.1 0.2 11.8 0.1 1.6 1 1 0 1 1 1 0 CRS1 / YhbY (CRM) domain Ribosomal_L37e PF01907.19 gi|325968348|ref|YP_004244540.1| - 0.052 13.7 0.7 0.11 12.7 0.7 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Aminotran_3 PF00202.21 gi|325968349|ref|YP_004244541.1| - 5.1e-59 200.0 0.0 6.8e-59 199.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Isochorismatase PF00857.20 gi|325968350|ref|YP_004244542.1| - 1.5e-33 116.5 0.0 1.7e-33 116.3 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF4065 PF13274.6 gi|325968351|ref|YP_004244543.1| - 0.13 13.2 0.1 0.22 12.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4065) Peptidase_M22 PF00814.25 gi|325968352|ref|YP_004244544.1| - 2.9e-73 246.9 0.0 3.4e-73 246.7 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family DUF2204 PF09970.9 gi|325968354|ref|YP_004244546.1| - 7.1e-05 22.5 0.9 0.00017 21.3 0.9 1.5 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) HSBP1 PF06825.12 gi|325968356|ref|YP_004244548.1| - 0.00079 19.2 0.5 0.15 12.0 0.1 2.4 1 1 0 2 2 2 2 Heat shock factor binding protein 1 COG5 PF10392.9 gi|325968356|ref|YP_004244548.1| - 0.035 14.3 0.1 0.039 14.1 0.1 1.1 1 0 0 1 1 1 0 Golgi transport complex subunit 5 AIP3 PF03915.13 gi|325968356|ref|YP_004244548.1| - 0.1 11.6 0.0 0.1 11.6 0.0 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 DUF5014 PF16406.5 gi|325968357|ref|YP_004244549.1| - 0.1 12.9 0.0 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5014) PaREP1 PF05942.11 gi|325968357|ref|YP_004244549.1| - 0.12 12.3 0.6 6.9 6.6 0.1 2.1 1 1 1 2 2 2 0 Archaeal PaREP1/PaREP8 family Pilin_N PF07790.11 gi|325968358|ref|YP_004244550.1| - 0.00037 21.4 5.8 0.00037 21.4 5.8 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Flp1_like PF16982.5 gi|325968358|ref|YP_004244550.1| - 0.022 14.2 0.8 0.033 13.6 0.8 1.3 1 0 0 1 1 1 0 Putative Flagellin, Flp1-like, domain ADH_zinc_N PF00107.26 gi|325968360|ref|YP_004244552.1| - 2.4e-21 76.1 0.1 3.5e-21 75.5 0.1 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|325968360|ref|YP_004244552.1| - 4.5e-21 74.8 0.0 6.8e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|325968360|ref|YP_004244552.1| - 4.1e-12 47.3 0.1 7.5e-12 46.4 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase SIS_2 PF13580.6 gi|325968360|ref|YP_004244552.1| - 0.0012 18.9 0.1 0.39 10.7 0.0 2.2 2 0 0 2 2 2 2 SIS domain Radical_SAM PF04055.21 gi|325968360|ref|YP_004244552.1| - 0.0048 17.3 0.8 0.012 16.0 0.8 1.8 1 1 0 1 1 1 1 Radical SAM superfamily CPBP PF02517.16 gi|325968361|ref|YP_004244553.1| - 3.7e-11 43.3 1.8 3.7e-11 43.3 1.8 2.4 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease UbiA PF01040.18 gi|325968362|ref|YP_004244554.1| - 2.5e-30 105.6 25.1 3.4e-30 105.2 24.6 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Linocin_M18 PF04454.12 gi|325968363|ref|YP_004244555.1| - 4e-31 108.2 0.0 6.3e-31 107.6 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|325968363|ref|YP_004244555.1| - 1.3e-08 35.3 0.4 3e-08 34.1 0.1 1.7 2 0 0 2 2 2 1 Rubrerythrin Ferritin PF00210.24 gi|325968363|ref|YP_004244555.1| - 0.0035 17.3 0.1 0.0079 16.1 0.1 1.6 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|325968363|ref|YP_004244555.1| - 0.0036 17.6 0.2 0.0082 16.5 0.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) DUF2202 PF09968.9 gi|325968363|ref|YP_004244555.1| - 0.0048 16.8 0.0 0.0085 15.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein domain (DUF2202) COQ7 PF03232.13 gi|325968363|ref|YP_004244555.1| - 0.082 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 DUF1641 PF07849.11 gi|325968364|ref|YP_004244556.1| - 4.6e-09 36.0 1.7 5.9e-09 35.7 0.4 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|325968365|ref|YP_004244557.1| - 3.3e-16 59.4 0.0 1.3e-11 44.3 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|325968365|ref|YP_004244557.1| - 0.011 15.7 0.0 0.35 10.9 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|325968365|ref|YP_004244557.1| - 0.15 12.7 0.1 0.86 10.2 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TPR_1 PF00515.28 gi|325968366|ref|YP_004244558.1| - 1.1e-11 44.0 3.8 0.00012 21.7 0.1 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|325968366|ref|YP_004244558.1| - 2.5e-11 42.8 3.9 0.00023 21.0 0.3 3.6 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|325968366|ref|YP_004244558.1| - 2.6e-08 33.7 1.5 0.011 16.1 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|325968366|ref|YP_004244558.1| - 1.4e-07 31.6 0.6 0.11 13.2 0.0 3.7 3 0 0 3 3 3 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|325968366|ref|YP_004244558.1| - 6.6e-07 29.5 0.2 1.6e-06 28.2 0.1 1.8 1 1 1 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 gi|325968366|ref|YP_004244558.1| - 7.1e-07 28.8 1.1 0.00034 20.2 0.1 2.5 2 0 0 2 2 2 2 TPR repeat TPR_8 PF13181.6 gi|325968366|ref|YP_004244558.1| - 5.5e-06 26.2 0.8 0.16 12.3 0.0 3.2 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|325968366|ref|YP_004244558.1| - 6.7e-06 26.3 1.2 0.011 16.0 1.0 3.0 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|325968366|ref|YP_004244558.1| - 4.8e-05 23.8 0.2 0.19 12.6 0.1 3.2 2 1 2 4 4 3 2 Tetratricopeptide repeat TPR_19 PF14559.6 gi|325968366|ref|YP_004244558.1| - 6.3e-05 23.4 0.2 0.017 15.6 0.0 2.8 1 1 2 3 3 3 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|325968366|ref|YP_004244558.1| - 0.00031 21.3 0.3 0.0098 16.5 0.1 2.5 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|325968366|ref|YP_004244558.1| - 0.00085 19.2 0.4 4.4 7.6 0.1 3.5 3 1 0 3 3 3 1 Tetratricopeptide repeat Coatomer_E PF04733.14 gi|325968366|ref|YP_004244558.1| - 0.068 12.6 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Coatomer epsilon subunit RVT_3 PF13456.6 gi|325968368|ref|YP_004244560.1| - 1e-17 64.1 0.0 1.3e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|325968368|ref|YP_004244560.1| - 1.2e-09 38.5 0.0 1.9e-09 37.8 0.0 1.4 1 1 0 1 1 1 1 RNase H ArsC PF03960.15 gi|325968368|ref|YP_004244560.1| - 0.041 13.9 0.1 0.13 12.3 0.1 1.8 1 1 1 2 2 2 0 ArsC family PAH PF02671.21 gi|325968368|ref|YP_004244560.1| - 0.11 12.7 0.5 19 5.5 0.1 2.4 2 0 0 2 2 2 0 Paired amphipathic helix repeat Orthopox_F14 PF06076.12 gi|325968369|ref|YP_004244561.1| - 0.0026 18.0 0.3 0.01 16.1 0.1 2.1 2 0 0 2 2 2 1 Orthopoxvirus F14 protein YozE_SAM_like PF06855.12 gi|325968369|ref|YP_004244561.1| - 0.012 15.8 0.0 0.093 12.9 0.0 2.4 2 0 0 2 2 2 0 YozE SAM-like fold CoA_transf_3 PF02515.17 gi|325968370|ref|YP_004244562.1| - 1.1e-112 376.8 0.0 1.3e-112 376.6 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III SAM_4 PF18017.1 gi|325968370|ref|YP_004244562.1| - 0.0032 17.4 0.0 0.0071 16.3 0.0 1.6 1 0 0 1 1 1 1 SAM domain (Sterile alpha motif) 4HBT_2 PF13279.6 gi|325968371|ref|YP_004244563.1| - 1.2e-06 29.0 0.0 1.8e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|325968371|ref|YP_004244563.1| - 0.00016 21.9 0.0 0.00023 21.5 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Polbeta PF18765.1 gi|325968372|ref|YP_004244564.1| - 0.0025 17.9 0.4 0.047 13.8 0.1 2.7 1 1 1 2 2 2 1 Polymerase beta, Nucleotidyltransferase RE_AccI PF09545.10 gi|325968372|ref|YP_004244564.1| - 0.0025 16.8 0.0 0.0047 16.0 0.0 1.3 1 1 0 1 1 1 1 AccI restriction endonuclease FOXO-TAD PF16676.5 gi|325968372|ref|YP_004244564.1| - 0.14 12.6 1.9 0.54 10.7 0.3 2.6 2 1 0 2 2 2 0 Transactivation domain of FOXO protein family ACT PF01842.25 gi|325968373|ref|YP_004244565.1| - 1.7e-05 24.5 0.1 5.9e-05 22.8 0.1 1.9 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|325968373|ref|YP_004244565.1| - 0.0012 19.3 5.3 0.033 14.8 2.9 2.8 2 1 1 3 3 3 1 ACT domain Vps51 PF08700.11 gi|325968373|ref|YP_004244565.1| - 0.096 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 Vps51/Vps67 RBD-FIP PF09457.10 gi|325968373|ref|YP_004244565.1| - 0.14 12.0 0.1 0.34 10.9 0.1 1.7 1 1 0 1 1 1 0 FIP domain DUF169 PF02596.15 gi|325968374|ref|YP_004244566.1| - 3.1e-19 69.7 0.0 3.6e-19 69.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AMP-binding_C PF13193.6 gi|325968374|ref|YP_004244566.1| - 0.0013 19.7 0.0 0.005 17.8 0.0 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Ribosomal_L14e PF01929.17 gi|325968375|ref|YP_004244567.1| - 5.8e-05 23.5 0.1 8.5e-05 23.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.29 gi|325968375|ref|YP_004244567.1| - 0.00051 19.9 2.1 0.00096 19.0 2.1 1.5 1 0 0 1 1 1 1 KOW motif Ribosomal_L27e PF01777.18 gi|325968375|ref|YP_004244567.1| - 0.017 15.5 0.1 0.024 15.0 0.1 1.3 1 0 0 1 1 1 0 Ribosomal L27e protein family MR_MLE_C PF13378.6 gi|325968376|ref|YP_004244568.1| - 1.8e-61 207.5 0.0 2.7e-61 206.9 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|325968376|ref|YP_004244568.1| - 2.8e-12 46.9 0.0 5.7e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DUF4015 PF13200.6 gi|325968376|ref|YP_004244568.1| - 0.00043 19.5 0.1 0.00059 19.0 0.1 1.1 1 0 0 1 1 1 1 Putative glycosyl hydrolase domain DeoC PF01791.9 gi|325968377|ref|YP_004244569.1| - 7.3e-07 29.0 0.1 9.8e-07 28.6 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase Glyco_hydro_101 PF12905.7 gi|325968377|ref|YP_004244569.1| - 0.12 11.7 0.0 1 8.7 0.0 2.2 2 1 0 2 2 2 0 Endo-alpha-N-acetylgalactosaminidase Ribosomal_S11 PF00411.19 gi|325968378|ref|YP_004244570.1| - 4.4e-44 149.4 2.3 6e-44 149.0 2.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Acetyltransf_1 PF00583.25 gi|325968379|ref|YP_004244571.1| - 3.3e-09 37.0 0.2 2.9e-08 34.0 0.1 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|325968379|ref|YP_004244571.1| - 9.1e-09 35.6 0.1 1.6e-08 34.8 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|325968379|ref|YP_004244571.1| - 4.4e-06 26.6 0.0 6.7e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|325968379|ref|YP_004244571.1| - 3.4e-05 23.7 0.0 5.9e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Rad51 PF08423.11 gi|325968380|ref|YP_004244572.1| - 2.4e-96 321.9 0.0 3.7e-96 321.3 0.0 1.3 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|325968380|ref|YP_004244572.1| - 3e-12 46.6 0.1 8.2e-12 45.1 0.1 1.6 1 1 1 2 2 2 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|325968380|ref|YP_004244572.1| - 2.4e-09 36.9 2.4 1.7e-08 34.1 2.4 2.8 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.6 gi|325968380|ref|YP_004244572.1| - 1.2e-08 35.4 2.0 2.8e-08 34.3 0.5 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|325968380|ref|YP_004244572.1| - 1.8e-08 34.2 0.0 4e-08 33.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain DNA_pol_lambd_f PF10391.9 gi|325968380|ref|YP_004244572.1| - 0.006 16.4 0.0 0.031 14.1 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_18 PF13238.6 gi|325968380|ref|YP_004244572.1| - 0.013 16.1 0.0 0.048 14.2 0.0 2.0 1 1 0 1 1 1 0 AAA domain BAF PF02961.14 gi|325968380|ref|YP_004244572.1| - 0.016 15.6 0.0 0.044 14.2 0.0 1.7 1 0 0 1 1 1 0 Barrier to autointegration factor PAXNEB PF05625.11 gi|325968380|ref|YP_004244572.1| - 0.026 13.7 1.5 0.7 9.0 0.2 2.2 1 1 1 2 2 2 0 PAXNEB protein HHH PF00633.23 gi|325968380|ref|YP_004244572.1| - 0.032 14.1 0.1 0.58 10.1 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_24 PF13479.6 gi|325968380|ref|YP_004244572.1| - 0.048 13.4 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain HhH-GPD PF00730.25 gi|325968380|ref|YP_004244572.1| - 0.057 13.9 0.0 0.1 13.1 0.0 1.7 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein ABC_tran PF00005.27 gi|325968380|ref|YP_004244572.1| - 0.068 13.7 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 ABC transporter DUF1485 PF07364.12 gi|325968380|ref|YP_004244572.1| - 0.081 12.2 0.4 0.13 11.5 0.4 1.3 1 0 0 1 1 1 0 Metallopeptidase family M81 AAA_22 PF13401.6 gi|325968380|ref|YP_004244572.1| - 0.095 13.0 0.3 0.31 11.3 0.3 2.0 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|325968380|ref|YP_004244572.1| - 0.18 11.6 0.0 0.45 10.3 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Asp_protease_2 PF13650.6 gi|325968381|ref|YP_004244573.1| - 0.0056 17.3 0.1 0.007 17.0 0.1 1.2 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|325968381|ref|YP_004244573.1| - 0.019 15.5 0.0 0.029 14.9 0.0 1.2 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease Radical_SAM PF04055.21 gi|325968382|ref|YP_004244574.1| - 3.8e-14 53.4 0.0 4.4e-11 43.4 0.0 2.9 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|325968382|ref|YP_004244574.1| - 0.00049 20.4 0.0 0.001 19.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325968382|ref|YP_004244574.1| - 0.0076 16.4 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain TrmB PF01978.19 gi|325968383|ref|YP_004244575.1| - 0.018 14.9 0.0 0.02 14.7 0.0 1.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|325968383|ref|YP_004244575.1| - 0.12 12.1 0.0 0.12 12.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DMRL_synthase PF00885.19 gi|325968384|ref|YP_004244576.1| - 1.8e-36 125.0 1.0 2.1e-36 124.9 1.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase MapZ_EC1 PF18041.1 gi|325968384|ref|YP_004244576.1| - 0.092 13.0 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 MapZ extracellular domain 1 NTPase_I-T PF01931.18 gi|325968385|ref|YP_004244577.1| - 7e-43 146.2 0.0 7.9e-43 146.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 SWIM PF04434.17 gi|325968388|ref|YP_004244580.1| - 0.0063 16.2 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 SWIM zinc finger DUF973 PF06157.11 gi|325968389|ref|YP_004244581.1| - 2.2e-05 23.7 15.6 2.2e-05 23.7 15.6 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF973) DHDPS PF00701.22 gi|325968390|ref|YP_004244582.1| - 2.3e-37 128.3 0.0 2.7e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family AFOR_N PF02730.15 gi|325968391|ref|YP_004244583.1| - 1.7e-39 135.7 0.1 2.6e-39 135.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|325968391|ref|YP_004244583.1| - 1.5e-14 53.8 0.0 3.9e-14 52.5 0.0 1.5 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 RRM_9 PF18444.1 gi|325968391|ref|YP_004244583.1| - 0.069 13.0 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 RNA recognition motif CBS PF00571.28 gi|325968392|ref|YP_004244584.1| - 9.3e-27 93.2 3.3 3.5e-14 53.0 0.3 2.2 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|325968392|ref|YP_004244584.1| - 0.12 12.7 0.3 18 5.7 0.0 2.5 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain RNA_pol_Rpc82 PF05645.13 gi|325968392|ref|YP_004244584.1| - 0.14 11.9 0.0 12 5.6 0.0 2.0 1 1 1 2 2 2 0 RNA polymerase III subunit RPC82 DUF1495 PF07381.11 gi|325968393|ref|YP_004244585.1| - 0.00032 20.4 0.0 0.00036 20.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Lipoprotein_Ltp PF07553.11 gi|325968393|ref|YP_004244585.1| - 0.0011 19.1 0.0 0.0021 18.3 0.0 1.4 1 0 0 1 1 1 1 Host cell surface-exposed lipoprotein DsrD PF08679.11 gi|325968393|ref|YP_004244585.1| - 0.012 15.9 0.5 0.015 15.6 0.5 1.1 1 0 0 1 1 1 0 Dissimilatory sulfite reductase D (DsrD) Trans_reg_C PF00486.28 gi|325968393|ref|YP_004244585.1| - 0.012 15.7 0.0 0.014 15.5 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal LexA_DNA_bind PF01726.16 gi|325968393|ref|YP_004244585.1| - 0.019 14.7 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain z-alpha PF02295.17 gi|325968393|ref|YP_004244585.1| - 0.029 14.4 0.3 0.036 14.1 0.3 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_20 PF12840.7 gi|325968393|ref|YP_004244585.1| - 0.047 13.8 0.0 0.052 13.6 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain RNA_pol_Rpc34 PF05158.12 gi|325968393|ref|YP_004244585.1| - 0.054 12.9 0.0 0.058 12.8 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DUF3253 PF11625.8 gi|325968393|ref|YP_004244585.1| - 0.058 13.6 0.0 0.093 13.0 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3253) ANAPC2 PF08672.11 gi|325968393|ref|YP_004244585.1| - 0.097 13.2 0.1 0.17 12.4 0.0 1.4 1 1 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 TrmB PF01978.19 gi|325968393|ref|YP_004244585.1| - 0.11 12.3 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|325968393|ref|YP_004244585.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.3 1 1 0 1 1 1 0 MarR family HemN_C PF06969.16 gi|325968393|ref|YP_004244585.1| - 0.14 12.2 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 HemN C-terminal domain Lactamase_B_2 PF12706.7 gi|325968394|ref|YP_004244586.1| - 2.8e-07 30.2 0.0 5.1e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|325968394|ref|YP_004244586.1| - 2.4e-06 27.5 0.0 3.9e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|325968394|ref|YP_004244586.1| - 0.00073 19.6 2.8 0.75 9.8 0.0 2.6 2 1 0 2 2 2 2 Metallo-beta-lactamase superfamily SAM_adeno_trans PF01887.16 gi|325968395|ref|YP_004244587.1| - 3.4e-81 272.1 0.0 3.8e-81 272.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DNA_binding_1 PF01035.20 gi|325968396|ref|YP_004244588.1| - 1.3e-22 79.7 0.0 2.3e-22 78.9 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Phage_Cox PF10743.9 gi|325968396|ref|YP_004244588.1| - 0.082 13.0 0.0 0.2 11.7 0.0 1.6 2 0 0 2 2 2 0 Regulatory phage protein cox HTH_17 PF12728.7 gi|325968396|ref|YP_004244588.1| - 0.13 12.5 0.0 0.39 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain ThiS PF02597.20 gi|325968397|ref|YP_004244589.1| - 1.4e-09 38.5 0.1 1.5e-09 38.3 0.1 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|325968397|ref|YP_004244589.1| - 1.2e-07 32.0 0.2 1.2e-07 31.9 0.2 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) QRPTase_C PF01729.19 gi|325968399|ref|YP_004244591.1| - 1.3e-17 64.1 0.0 1.7e-17 63.7 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|325968399|ref|YP_004244591.1| - 2.4e-06 27.5 0.0 4.5e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|325968399|ref|YP_004244591.1| - 0.00025 21.5 0.0 0.034 14.5 0.0 2.2 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase_C PF17956.1 gi|325968399|ref|YP_004244591.1| - 0.0036 17.7 0.0 0.008 16.6 0.0 1.6 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain PDDEXK_10 PF07788.11 gi|325968399|ref|YP_004244591.1| - 0.062 13.2 0.0 8.6 6.4 0.0 2.4 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily THUMP PF02926.17 gi|325968400|ref|YP_004244592.1| - 3.6e-16 59.6 0.4 4.6e-16 59.2 0.4 1.2 1 0 0 1 1 1 1 THUMP domain NAD_binding_2 PF03446.15 gi|325968401|ref|YP_004244593.1| - 2.7e-20 73.1 0.1 7.9e-20 71.6 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|325968401|ref|YP_004244593.1| - 1.4e-14 54.3 0.0 2.4e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|325968401|ref|YP_004244593.1| - 4.4e-06 27.2 0.0 1.5e-05 25.5 0.0 1.9 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|325968401|ref|YP_004244593.1| - 7.7e-05 22.1 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|325968401|ref|YP_004244593.1| - 9.5e-05 22.5 0.0 0.00022 21.3 0.0 1.6 2 0 0 2 2 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|325968401|ref|YP_004244593.1| - 0.00013 21.9 0.0 0.0002 21.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|325968401|ref|YP_004244593.1| - 0.00038 20.5 0.0 0.00076 19.5 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|325968401|ref|YP_004244593.1| - 0.00051 19.7 0.0 0.00088 18.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.6 gi|325968401|ref|YP_004244593.1| - 0.0019 18.1 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding Rossmann-like PF10727.9 gi|325968401|ref|YP_004244593.1| - 0.0097 15.8 0.0 0.025 14.5 0.0 1.7 1 1 0 1 1 1 1 Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|325968401|ref|YP_004244593.1| - 0.015 15.6 0.0 0.025 14.9 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|325968401|ref|YP_004244593.1| - 0.042 14.1 0.0 0.088 13.1 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain adh_short PF00106.25 gi|325968401|ref|YP_004244593.1| - 0.046 13.2 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.13 gi|325968401|ref|YP_004244593.1| - 0.05 13.2 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family DapB_N PF01113.20 gi|325968401|ref|YP_004244593.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|325968401|ref|YP_004244593.1| - 0.096 12.1 0.0 0.18 11.3 0.0 1.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family Oberon_cc PF16312.5 gi|325968401|ref|YP_004244593.1| - 0.25 11.3 0.0 0.47 10.4 0.0 1.4 1 0 0 1 1 1 0 Coiled-coil region of Oberon Ribosomal_L31e PF01198.19 gi|325968402|ref|YP_004244594.1| - 1.4e-16 60.5 0.7 2.1e-16 59.9 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L31e AAA PF00004.29 gi|325968403|ref|YP_004244595.1| - 4.3e-81 269.9 0.0 1.9e-41 141.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|325968403|ref|YP_004244595.1| - 6.6e-24 83.5 0.1 4.9e-13 48.7 0.0 2.5 2 0 0 2 2 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|325968403|ref|YP_004244595.1| - 2.3e-12 47.0 0.0 8.6e-06 25.6 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|325968403|ref|YP_004244595.1| - 4.6e-12 46.4 0.0 2.4e-05 24.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|325968403|ref|YP_004244595.1| - 2.4e-11 43.8 1.8 7.6e-05 22.7 0.2 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|325968403|ref|YP_004244595.1| - 6.3e-11 42.7 0.2 0.022 15.0 0.0 4.2 3 2 2 5 5 4 3 AAA domain AAA_16 PF13191.6 gi|325968403|ref|YP_004244595.1| - 1.1e-09 38.9 0.1 0.09 13.2 0.0 4.3 2 2 2 4 4 4 2 AAA ATPase domain Mg_chelatase PF01078.21 gi|325968403|ref|YP_004244595.1| - 8.3e-09 35.1 1.6 0.0018 17.7 0.3 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|325968403|ref|YP_004244595.1| - 1.1e-07 31.9 0.0 0.012 15.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|325968403|ref|YP_004244595.1| - 1.3e-07 31.6 0.0 0.0016 18.2 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|325968403|ref|YP_004244595.1| - 1.6e-07 32.0 0.0 0.017 15.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|325968403|ref|YP_004244595.1| - 9.5e-07 29.1 0.0 0.0052 16.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|325968403|ref|YP_004244595.1| - 6.4e-06 26.1 0.0 0.0055 16.7 0.0 2.6 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.6 gi|325968403|ref|YP_004244595.1| - 1.6e-05 24.7 0.0 0.29 10.8 0.0 3.2 3 0 0 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|325968403|ref|YP_004244595.1| - 2.7e-05 24.5 0.0 0.27 11.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|325968403|ref|YP_004244595.1| - 7.4e-05 22.3 0.0 0.18 11.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region TsaE PF02367.17 gi|325968403|ref|YP_004244595.1| - 0.00014 21.9 0.1 0.19 11.7 0.0 2.7 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TIP49 PF06068.13 gi|325968403|ref|YP_004244595.1| - 0.00014 21.2 0.0 0.24 10.6 0.0 2.2 2 0 0 2 2 2 2 TIP49 P-loop domain NACHT PF05729.12 gi|325968403|ref|YP_004244595.1| - 0.0002 21.3 0.3 0.14 12.0 0.1 3.4 2 1 1 3 3 3 1 NACHT domain AAA_17 PF13207.6 gi|325968403|ref|YP_004244595.1| - 0.00025 21.5 0.0 0.13 12.7 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_3 PF07726.11 gi|325968403|ref|YP_004244595.1| - 0.00027 20.8 0.1 0.67 9.8 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|325968403|ref|YP_004244595.1| - 0.00041 20.3 0.2 5.8 6.8 0.0 3.6 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|325968403|ref|YP_004244595.1| - 0.00048 19.9 0.0 0.78 9.4 0.0 2.7 3 0 0 3 3 2 2 Sigma-54 interaction domain ABC_tran PF00005.27 gi|325968403|ref|YP_004244595.1| - 0.00061 20.3 0.0 0.38 11.3 0.1 2.4 2 0 0 2 2 2 1 ABC transporter AAA_28 PF13521.6 gi|325968403|ref|YP_004244595.1| - 0.001 19.4 0.0 0.3 11.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|325968403|ref|YP_004244595.1| - 0.0011 18.6 1.5 0.97 9.0 0.1 3.3 4 0 0 4 4 3 1 AAA domain TniB PF05621.11 gi|325968403|ref|YP_004244595.1| - 0.0032 16.9 0.1 21 4.4 0.0 3.7 3 1 1 4 4 4 0 Bacterial TniB protein DUF815 PF05673.13 gi|325968403|ref|YP_004244595.1| - 0.0036 16.5 0.0 1.7 7.7 0.0 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|325968403|ref|YP_004244595.1| - 0.0056 17.0 0.8 3.1 8.1 0.0 3.2 2 1 1 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|325968403|ref|YP_004244595.1| - 0.0076 16.2 3.8 0.97 9.3 0.0 3.3 4 1 0 4 4 2 1 NTPase MCM PF00493.23 gi|325968403|ref|YP_004244595.1| - 0.011 14.8 0.0 4.3 6.4 0.0 2.8 3 0 0 3 3 3 0 MCM P-loop domain SKI PF01202.22 gi|325968403|ref|YP_004244595.1| - 0.012 15.7 0.0 1.8 8.6 0.0 2.3 2 0 0 2 2 2 0 Shikimate kinase Zeta_toxin PF06414.12 gi|325968403|ref|YP_004244595.1| - 0.013 14.8 0.0 0.94 8.7 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin Bac_DnaA PF00308.18 gi|325968403|ref|YP_004244595.1| - 0.013 15.3 0.5 51 3.6 0.0 3.9 4 0 0 4 4 4 0 Bacterial dnaA protein AAA_30 PF13604.6 gi|325968403|ref|YP_004244595.1| - 0.056 13.2 1.7 4.7 6.9 0.0 2.9 3 1 0 3 3 2 0 AAA domain NB-ARC PF00931.22 gi|325968403|ref|YP_004244595.1| - 0.057 12.6 0.1 5.5 6.1 0.1 2.6 3 0 0 3 3 3 0 NB-ARC domain PhoH PF02562.16 gi|325968403|ref|YP_004244595.1| - 0.061 12.8 0.2 12 5.3 0.1 2.4 2 0 0 2 2 2 0 PhoH-like protein Cytidylate_kin PF02224.18 gi|325968403|ref|YP_004244595.1| - 0.098 12.4 0.0 17 5.1 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase Rad17 PF03215.15 gi|325968403|ref|YP_004244595.1| - 0.1 12.5 0.0 9.9 6.0 0.0 2.6 2 0 0 2 2 2 0 Rad17 P-loop domain Sigma54_activ_2 PF14532.6 gi|325968403|ref|YP_004244595.1| - 0.11 12.6 0.0 20 5.3 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain ATPase PF06745.13 gi|325968403|ref|YP_004244595.1| - 0.11 11.8 0.2 29 3.9 0.0 3.0 3 0 0 3 3 3 0 KaiC AFG1_ATPase PF03969.16 gi|325968403|ref|YP_004244595.1| - 0.16 10.9 0.0 12 4.7 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.10 gi|325968403|ref|YP_004244595.1| - 0.16 11.4 0.0 21 4.5 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Parvo_NS1 PF01057.17 gi|325968403|ref|YP_004244595.1| - 0.21 10.6 0.2 3.3 6.7 0.1 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 HTH_7 PF02796.15 gi|325968404|ref|YP_004244596.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DMRL_synthase PF00885.19 gi|325968406|ref|YP_004244598.1| - 5.1e-12 45.8 0.0 6.1e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Glyco_hydro_57 PF03065.15 gi|325968408|ref|YP_004244600.1| - 6.4e-49 166.9 0.0 8.8e-49 166.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Cdc6_C PF09079.11 gi|325968410|ref|YP_004244602.1| - 1.4e-18 66.7 0.0 3.2e-18 65.5 0.0 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|325968410|ref|YP_004244602.1| - 3.8e-09 36.9 0.0 1.2e-08 35.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|325968410|ref|YP_004244602.1| - 2.8e-06 27.8 0.2 8.5e-05 23.0 0.0 2.5 1 1 1 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|325968410|ref|YP_004244602.1| - 0.0017 17.6 0.0 0.012 14.8 0.0 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA PF00004.29 gi|325968410|ref|YP_004244602.1| - 0.0067 16.9 0.0 0.014 15.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) 6PF2K PF01591.18 gi|325968410|ref|YP_004244602.1| - 0.013 14.8 0.1 0.029 13.7 0.1 1.5 1 1 0 1 1 1 0 6-phosphofructo-2-kinase Bac_DnaA PF00308.18 gi|325968410|ref|YP_004244602.1| - 0.021 14.7 0.0 0.16 11.8 0.0 2.3 3 0 0 3 3 3 0 Bacterial dnaA protein IstB_IS21 PF01695.17 gi|325968410|ref|YP_004244602.1| - 0.023 14.4 0.0 0.046 13.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein CooC_C PF15976.5 gi|325968410|ref|YP_004244602.1| - 0.024 14.7 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 CS1-pili formation C-terminal AAA_24 PF13479.6 gi|325968410|ref|YP_004244602.1| - 0.046 13.5 0.0 0.079 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain PadR PF03551.14 gi|325968410|ref|YP_004244602.1| - 0.065 13.2 0.3 0.77 9.8 0.1 2.3 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Zeta_toxin PF06414.12 gi|325968410|ref|YP_004244602.1| - 0.15 11.3 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|325968410|ref|YP_004244602.1| - 0.15 11.4 0.1 2.6 7.3 0.0 2.2 1 1 0 2 2 2 0 KaiC AAA_19 PF13245.6 gi|325968410|ref|YP_004244602.1| - 0.19 12.0 0.0 0.32 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|325968410|ref|YP_004244602.1| - 0.2 11.1 0.0 0.37 10.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 HpcH_HpaI PF03328.14 gi|325968411|ref|YP_004244603.1| - 2.5e-37 128.1 0.2 4.5e-18 65.2 0.0 2.1 2 0 0 2 2 2 2 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|325968411|ref|YP_004244603.1| - 2.4e-14 53.3 0.0 1.6e-08 34.1 0.0 2.1 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold BH4 PF02180.17 gi|325968411|ref|YP_004244603.1| - 0.053 13.3 0.2 0.12 12.2 0.2 1.5 1 0 0 1 1 1 0 Bcl-2 homology region 4 ADH_N PF08240.12 gi|325968412|ref|YP_004244604.1| - 6.9e-21 74.2 0.1 8.7e-20 70.6 0.1 2.2 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|325968412|ref|YP_004244604.1| - 3e-17 62.8 0.0 4.6e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|325968412|ref|YP_004244604.1| - 5.5e-10 40.4 0.3 9.3e-10 39.7 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|325968412|ref|YP_004244604.1| - 7.7e-05 22.3 0.1 0.00011 21.8 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Epimerase PF01370.21 gi|325968412|ref|YP_004244604.1| - 0.042 13.3 0.1 0.077 12.4 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family LDcluster4 PF18306.1 gi|325968412|ref|YP_004244604.1| - 0.048 13.3 0.5 0.09 12.4 0.5 1.4 1 0 0 1 1 1 0 SLOG cluster4 family Glycos_transf_2 PF00535.26 gi|325968413|ref|YP_004244605.1| - 4e-26 91.8 0.0 7.1e-26 91.0 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968413|ref|YP_004244605.1| - 9.1e-06 25.7 0.0 1.4e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 YlaC PF10777.9 gi|325968413|ref|YP_004244605.1| - 1.8 8.4 6.3 0.16 11.8 0.8 1.9 1 1 1 2 2 2 0 Inner membrane protein YlaC UPF0020 PF01170.18 gi|325968414|ref|YP_004244606.1| - 1.9e-28 99.5 0.0 5.7e-28 98.0 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|325968414|ref|YP_004244606.1| - 2.6e-08 33.6 0.0 3.7e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|325968414|ref|YP_004244606.1| - 6e-05 23.0 0.0 0.086 12.8 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325968414|ref|YP_004244606.1| - 0.00016 21.5 0.0 0.00033 20.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968414|ref|YP_004244606.1| - 0.00043 20.9 0.0 0.00081 20.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|325968414|ref|YP_004244606.1| - 0.00068 19.7 0.0 0.0012 18.9 0.0 1.5 1 0 0 1 1 1 1 THUMP domain N6_N4_Mtase PF01555.18 gi|325968414|ref|YP_004244606.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.6 2 0 0 2 2 2 1 DNA methylase Methyltransf_4 PF02390.17 gi|325968414|ref|YP_004244606.1| - 0.016 14.7 0.0 0.029 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Cons_hypoth95 PF03602.15 gi|325968414|ref|YP_004244606.1| - 0.044 13.4 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PrmA PF06325.13 gi|325968414|ref|YP_004244606.1| - 0.094 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2192 PF09958.9 gi|325968415|ref|YP_004244607.1| - 6.4e-76 254.9 3.6 7.2e-76 254.7 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_L16 PF00252.18 gi|325968416|ref|YP_004244608.1| - 1.3e-31 109.4 0.1 1.6e-31 109.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e HTH_45 PF14947.6 gi|325968417|ref|YP_004244609.1| - 7.1e-07 29.1 0.0 8.1e-07 28.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Phage_holin_3_6 PF07332.11 gi|325968418|ref|YP_004244610.1| - 0.0043 17.1 5.3 0.0043 17.1 5.3 2.3 2 0 0 2 2 2 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4395 PF14340.6 gi|325968418|ref|YP_004244610.1| - 1.2 9.4 13.4 0.38 11.1 7.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4395) YwpF PF14183.6 gi|325968419|ref|YP_004244611.1| - 0.18 11.8 0.1 9.9 6.2 0.0 2.1 2 0 0 2 2 2 0 YwpF-like protein NAC PF01849.18 gi|325968420|ref|YP_004244612.1| - 4.1e-09 36.3 0.2 8.7e-09 35.2 0.2 1.6 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|325968420|ref|YP_004244612.1| - 0.00032 20.4 0.0 0.0009 19.0 0.0 1.7 2 0 0 2 2 2 1 UBA-like domain HOIP-UBA PF16678.5 gi|325968420|ref|YP_004244612.1| - 0.08 12.9 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair TPP_enzyme_C PF02775.21 gi|325968420|ref|YP_004244612.1| - 0.097 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DUF1296 PF06972.11 gi|325968420|ref|YP_004244612.1| - 0.12 12.5 0.9 0.25 11.5 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1296) RNA_pol_Rpb5_C PF01191.19 gi|325968420|ref|YP_004244612.1| - 0.12 12.3 0.9 2.4 8.1 0.1 2.8 2 1 1 3 3 3 0 RNA polymerase Rpb5, C-terminal domain Thioredoxin_4 PF13462.6 gi|325968421|ref|YP_004244613.1| - 1.2e-09 38.5 0.1 1e-08 35.5 0.0 2.2 2 1 0 2 2 2 1 Thioredoxin Pilin_N PF07790.11 gi|325968421|ref|YP_004244613.1| - 0.013 16.4 0.1 0.034 15.1 0.1 1.8 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal tRNA-synt_2c PF01411.19 gi|325968423|ref|YP_004244615.1| - 1.9e-116 389.8 0.0 2.9e-116 389.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|325968423|ref|YP_004244615.1| - 2e-13 50.2 0.4 4e-13 49.2 0.4 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|325968423|ref|YP_004244615.1| - 4e-05 24.0 0.1 8.1e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|325968423|ref|YP_004244615.1| - 0.00099 18.4 0.1 0.002 17.4 0.1 1.5 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Phage_pRha PF09669.10 gi|325968423|ref|YP_004244615.1| - 0.17 12.5 0.1 0.48 11.0 0.1 1.7 1 0 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) Lactamase_B PF00753.27 gi|325968424|ref|YP_004244616.1| - 1e-16 61.5 3.7 1.6e-16 60.9 3.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|325968424|ref|YP_004244616.1| - 1.6e-07 31.1 0.1 2.5e-07 30.4 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RL10P_insert PF17777.1 gi|325968425|ref|YP_004244617.1| - 2.4e-21 75.5 0.1 8.6e-20 70.5 0.0 2.4 1 1 1 2 2 2 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|325968425|ref|YP_004244617.1| - 2.8e-21 75.5 0.1 1.4e-20 73.3 0.0 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 7TMR-HDED PF07697.11 gi|325968425|ref|YP_004244617.1| - 0.0072 16.5 0.6 0.0072 16.5 0.6 3.4 4 0 0 4 4 4 1 7TM-HD extracellular U1snRNP70_N PF12220.8 gi|325968425|ref|YP_004244617.1| - 0.025 15.2 3.4 0.055 14.1 3.4 1.6 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal Arc_PepC PF06819.11 gi|325968425|ref|YP_004244617.1| - 0.053 13.7 0.7 0.053 13.7 0.7 2.7 3 0 0 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain DUF982 PF06169.12 gi|325968425|ref|YP_004244617.1| - 0.11 12.6 0.3 0.24 11.5 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF982) Ribosomal_L1 PF00687.21 gi|325968426|ref|YP_004244618.1| - 1.7e-39 135.7 2.7 2.1e-39 135.4 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.19 gi|325968427|ref|YP_004244619.1| - 1.7e-15 57.3 0.2 3.6e-15 56.2 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|325968427|ref|YP_004244619.1| - 6e-10 38.8 1.0 1e-09 38.1 1.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Sec3_C_2 PF15278.6 gi|325968427|ref|YP_004244619.1| - 0.051 13.9 0.6 1.4 9.3 0.1 2.3 1 1 1 2 2 2 0 Sec3 exocyst complex subunit ArgoMid PF16487.5 gi|325968427|ref|YP_004244619.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Mid domain of argonaute Spt5-NGN PF03439.13 gi|325968428|ref|YP_004244620.1| - 1e-15 57.4 0.1 1.2e-14 54.0 0.0 2.0 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|325968428|ref|YP_004244620.1| - 5.1e-05 23.1 2.5 0.00015 21.6 2.5 1.9 1 0 0 1 1 1 1 KOW motif MnhB PF04039.13 gi|325968429|ref|YP_004244621.1| - 0.003 17.8 3.3 0.0037 17.6 3.3 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter FtsX PF02687.21 gi|325968429|ref|YP_004244621.1| - 0.01 16.3 8.0 0.015 15.8 8.0 1.2 1 0 0 1 1 1 0 FtsX-like permease family MIG-14_Wnt-bd PF06664.12 gi|325968429|ref|YP_004244621.1| - 0.043 13.0 6.9 0.054 12.7 6.9 1.2 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion Coiled-coil_56 PF09813.9 gi|325968429|ref|YP_004244621.1| - 0.13 12.4 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 DUF2207 PF09972.9 gi|325968429|ref|YP_004244621.1| - 0.52 9.0 6.6 0.55 8.9 6.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DHHC PF01529.20 gi|325968429|ref|YP_004244621.1| - 0.53 10.4 4.7 0.62 10.2 4.7 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Saf_2TM PF18303.1 gi|325968429|ref|YP_004244621.1| - 0.57 9.8 4.9 0.68 9.5 4.9 1.1 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain DUF5527 PF17665.1 gi|325968429|ref|YP_004244621.1| - 8.7 5.9 6.7 11 5.5 6.5 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5527) SRP54 PF00448.22 gi|325968430|ref|YP_004244622.1| - 5.9e-67 225.1 0.0 7.8e-67 224.7 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|325968430|ref|YP_004244622.1| - 2e-06 27.9 0.2 4.4e-06 26.8 0.2 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|325968430|ref|YP_004244622.1| - 0.00014 21.6 0.0 0.00022 21.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|325968430|ref|YP_004244622.1| - 0.002 18.4 0.0 0.003 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|325968430|ref|YP_004244622.1| - 0.004 16.8 0.1 0.021 14.4 0.1 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|325968430|ref|YP_004244622.1| - 0.0041 17.4 0.0 0.02 15.2 0.0 2.1 1 1 1 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|325968430|ref|YP_004244622.1| - 0.014 15.3 0.2 0.16 11.8 0.1 2.6 1 1 1 2 2 2 0 NTPase AAA_7 PF12775.7 gi|325968430|ref|YP_004244622.1| - 0.018 14.6 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|325968430|ref|YP_004244622.1| - 0.018 15.6 0.0 0.035 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|325968430|ref|YP_004244622.1| - 0.018 15.4 0.0 0.03 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain PPK2 PF03976.14 gi|325968430|ref|YP_004244622.1| - 0.02 14.4 0.0 0.051 13.1 0.0 1.6 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) Rad17 PF03215.15 gi|325968430|ref|YP_004244622.1| - 0.028 14.3 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|325968430|ref|YP_004244622.1| - 0.03 13.6 0.0 0.052 12.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|325968430|ref|YP_004244622.1| - 0.03 14.7 0.0 0.052 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|325968430|ref|YP_004244622.1| - 0.041 14.0 0.0 0.12 12.4 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MMR_HSR1 PF01926.23 gi|325968430|ref|YP_004244622.1| - 0.044 13.9 0.0 0.23 11.5 0.0 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase Helicase_RecD PF05127.14 gi|325968430|ref|YP_004244622.1| - 0.066 13.1 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Helicase ResIII PF04851.15 gi|325968430|ref|YP_004244622.1| - 0.086 12.8 0.2 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|325968430|ref|YP_004244622.1| - 0.094 13.2 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 gi|325968430|ref|YP_004244622.1| - 0.15 12.5 0.1 0.38 11.2 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF507 PF04368.13 gi|325968430|ref|YP_004244622.1| - 0.15 12.0 0.2 1.6 8.6 0.2 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF507) AAA_11 PF13086.6 gi|325968430|ref|YP_004244622.1| - 0.23 11.2 0.0 0.41 10.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain Prefoldin PF02996.17 gi|325968431|ref|YP_004244623.1| - 8.4e-16 58.0 0.1 1.4e-15 57.2 0.0 1.4 1 1 0 1 1 1 1 Prefoldin subunit DUF3584 PF12128.8 gi|325968431|ref|YP_004244623.1| - 0.0012 16.4 0.7 0.18 9.3 0.4 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) DUF5082 PF16888.5 gi|325968431|ref|YP_004244623.1| - 0.0015 18.8 4.0 0.59 10.4 0.3 2.8 2 1 1 3 3 3 2 Domain of unknown function (DUF5082) Prefoldin_2 PF01920.20 gi|325968431|ref|YP_004244623.1| - 0.017 15.1 0.5 5.3 7.1 0.1 2.4 1 1 1 2 2 2 0 Prefoldin subunit APG17 PF04108.12 gi|325968431|ref|YP_004244623.1| - 0.017 14.3 0.2 0.018 14.2 0.2 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 Tektin PF03148.14 gi|325968431|ref|YP_004244623.1| - 0.02 13.7 2.7 0.24 10.1 0.1 2.0 2 0 0 2 2 2 0 Tektin family NPV_P10 PF05531.12 gi|325968431|ref|YP_004244623.1| - 0.026 15.0 4.0 0.3 11.6 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|325968431|ref|YP_004244623.1| - 0.036 14.4 3.2 2.6 8.4 0.2 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|325968431|ref|YP_004244623.1| - 0.11 11.4 2.5 1.7 7.5 0.6 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein ANAPC_CDC26 PF10471.9 gi|325968431|ref|YP_004244623.1| - 0.11 13.3 1.2 0.25 12.2 0.2 2.0 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit CDC26 MerR-DNA-bind PF09278.11 gi|325968431|ref|YP_004244623.1| - 0.43 11.2 5.8 6.3 7.4 2.7 2.6 2 1 0 2 2 2 0 MerR, DNA binding Ribosomal_L18A PF01775.17 gi|325968432|ref|YP_004244624.1| - 4.2e-11 43.0 0.1 5.7e-11 42.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A HTH_3 PF01381.22 gi|325968433|ref|YP_004244625.1| - 3.4e-12 46.2 0.7 6.6e-12 45.3 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|325968433|ref|YP_004244625.1| - 3.3e-08 33.7 0.1 1.1e-07 32.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|325968433|ref|YP_004244625.1| - 2.8e-06 27.3 0.5 6e-06 26.2 0.5 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|325968433|ref|YP_004244625.1| - 9.7e-06 25.4 0.3 2.2e-05 24.2 0.3 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|325968433|ref|YP_004244625.1| - 0.024 15.0 0.7 0.065 13.6 0.7 1.8 1 0 0 1 1 1 0 Archaeal TRASH domain zf-FPG_IleRS PF06827.14 gi|325968433|ref|YP_004244625.1| - 0.064 13.1 0.8 0.53 10.2 0.8 2.2 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS DUF4428 PF14471.6 gi|325968433|ref|YP_004244625.1| - 0.13 12.2 1.0 0.68 9.9 1.0 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) GTP-bdg_N PF13167.6 gi|325968434|ref|YP_004244626.1| - 9.7e-23 80.7 0.0 2.1e-22 79.6 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 gi|325968434|ref|YP_004244626.1| - 3.9e-16 59.4 3.2 6.9e-16 58.6 3.2 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 gi|325968434|ref|YP_004244626.1| - 6.9e-16 58.3 0.0 1.6e-15 57.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|325968434|ref|YP_004244626.1| - 2.7e-06 27.0 0.4 6.8e-06 25.7 0.4 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|325968434|ref|YP_004244626.1| - 0.00039 20.4 0.0 0.00092 19.2 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|325968434|ref|YP_004244626.1| - 0.00044 20.0 0.2 0.33 10.7 0.1 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|325968434|ref|YP_004244626.1| - 0.0014 18.1 0.2 0.004 16.6 0.1 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|325968434|ref|YP_004244626.1| - 0.0028 17.6 0.0 2.9 7.8 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase Ras PF00071.22 gi|325968434|ref|YP_004244626.1| - 0.0031 17.1 0.0 0.0059 16.2 0.0 1.5 1 1 0 1 1 1 1 Ras family cobW PF02492.19 gi|325968434|ref|YP_004244626.1| - 0.013 15.1 0.8 0.39 10.3 0.1 2.3 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.10 gi|325968434|ref|YP_004244626.1| - 0.024 14.1 0.0 0.046 13.1 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MnmE_helical PF12631.7 gi|325968434|ref|YP_004244626.1| - 0.042 14.0 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 MnmE helical domain GTP_EFTU PF00009.27 gi|325968434|ref|YP_004244626.1| - 0.058 12.9 0.0 6.8 6.2 0.0 2.4 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|325968434|ref|YP_004244626.1| - 0.059 13.6 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|325968434|ref|YP_004244626.1| - 0.13 12.4 0.1 0.35 11.1 0.0 1.7 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase TFIIE_alpha PF02002.17 gi|325968435|ref|YP_004244627.1| - 2.8e-08 33.5 0.5 4.5e-08 32.9 0.5 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|325968435|ref|YP_004244627.1| - 0.0024 17.7 0.0 0.0046 16.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|325968435|ref|YP_004244627.1| - 0.01 16.2 0.1 0.023 15.0 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.21 gi|325968435|ref|YP_004244627.1| - 0.07 12.8 1.1 0.15 11.7 0.6 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|325968435|ref|YP_004244627.1| - 0.094 12.6 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|325968435|ref|YP_004244627.1| - 0.095 12.7 0.7 0.29 11.1 0.2 1.9 2 0 0 2 2 2 0 HTH domain HTH_9 PF08221.11 gi|325968435|ref|YP_004244627.1| - 0.15 12.1 0.3 0.41 10.8 0.1 1.8 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Pyr_redox_2 PF07992.14 gi|325968436|ref|YP_004244628.1| - 7.5e-63 212.5 2.4 9.3e-63 212.2 2.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325968436|ref|YP_004244628.1| - 3.2e-23 82.1 6.0 2.2e-21 76.2 0.5 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|325968436|ref|YP_004244628.1| - 8.9e-15 54.9 0.1 5.8e-14 52.3 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|325968436|ref|YP_004244628.1| - 8.2e-14 51.6 3.3 1.4e-11 44.2 0.4 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325968436|ref|YP_004244628.1| - 8.5e-09 35.5 0.8 0.0013 18.9 0.3 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|325968436|ref|YP_004244628.1| - 1.2e-08 35.0 8.8 0.0093 15.6 0.1 3.8 3 1 1 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|325968436|ref|YP_004244628.1| - 1.6e-07 30.4 6.5 0.067 11.9 0.4 4.3 4 1 1 5 5 5 4 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|325968436|ref|YP_004244628.1| - 1.1e-05 24.8 1.7 0.041 13.2 0.5 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|325968436|ref|YP_004244628.1| - 7.8e-05 22.0 0.2 0.0081 15.3 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|325968436|ref|YP_004244628.1| - 0.00012 21.3 4.8 0.073 12.1 0.9 3.7 4 0 0 4 4 4 2 FAD binding domain NAD_binding_7 PF13241.6 gi|325968436|ref|YP_004244628.1| - 0.0009 19.6 0.7 1.6 9.2 0.0 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|325968436|ref|YP_004244628.1| - 0.0012 18.3 0.2 0.084 12.2 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.22 gi|325968436|ref|YP_004244628.1| - 0.0021 17.2 8.1 0.17 10.9 0.6 3.9 4 1 0 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|325968436|ref|YP_004244628.1| - 0.0024 17.3 5.8 0.3 10.4 1.2 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|325968436|ref|YP_004244628.1| - 0.023 14.7 4.7 8.9 6.3 0.1 4.0 3 1 1 4 4 4 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|325968436|ref|YP_004244628.1| - 0.025 13.7 0.6 0.36 9.8 0.2 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein TrkA_N PF02254.18 gi|325968436|ref|YP_004244628.1| - 0.038 14.3 0.8 1.3 9.3 0.0 2.6 3 0 0 3 3 2 0 TrkA-N domain FAD_binding_3 PF01494.19 gi|325968436|ref|YP_004244628.1| - 0.47 9.6 2.8 7.5 5.7 0.3 2.5 2 1 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.14 gi|325968436|ref|YP_004244628.1| - 1.6 7.5 4.6 0.48 9.2 0.1 2.2 3 0 0 3 3 3 0 Tryptophan halogenase G_glu_transpept PF01019.21 gi|325968438|ref|YP_004244630.1| - 1.6e-116 390.1 0.0 2.2e-116 389.6 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peripla_BP_2 PF01497.18 gi|325968439|ref|YP_004244631.1| - 2.4e-26 92.8 0.0 3.2e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|325968440|ref|YP_004244632.1| - 6.9e-69 232.2 42.5 8.1e-69 232.0 42.5 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|325968440|ref|YP_004244632.1| - 0.00013 21.6 31.4 0.00035 20.2 31.1 1.9 1 1 0 1 1 1 1 ABC 3 transport family Gly-zipper_YMGG PF13441.6 gi|325968440|ref|YP_004244632.1| - 0.042 13.6 0.2 0.042 13.6 0.2 2.1 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 gi|325968440|ref|YP_004244632.1| - 0.14 11.9 2.2 0.91 9.4 0.4 2.3 2 0 0 2 2 2 0 Glycine-zipper domain RPW8 PF05659.11 gi|325968440|ref|YP_004244632.1| - 0.81 9.4 3.9 3.1 7.5 0.2 2.6 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ABC_tran PF00005.27 gi|325968441|ref|YP_004244633.1| - 1.4e-25 90.4 0.0 1.9e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325968441|ref|YP_004244633.1| - 5.4e-14 52.7 0.1 8.9e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968441|ref|YP_004244633.1| - 7.4e-09 35.4 0.0 0.0015 18.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|325968441|ref|YP_004244633.1| - 4.7e-07 29.8 0.0 0.0014 18.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|325968441|ref|YP_004244633.1| - 2.3e-06 28.2 0.2 4.8e-06 27.2 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|325968441|ref|YP_004244633.1| - 0.0001 22.4 0.0 0.0025 17.9 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|325968441|ref|YP_004244633.1| - 0.00012 22.3 0.6 0.0013 19.0 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325968441|ref|YP_004244633.1| - 0.00031 21.2 0.0 0.00066 20.1 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|325968441|ref|YP_004244633.1| - 0.00056 19.6 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|325968441|ref|YP_004244633.1| - 0.0024 18.3 0.1 0.017 15.5 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|325968441|ref|YP_004244633.1| - 0.0025 16.7 0.1 0.08 11.7 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|325968441|ref|YP_004244633.1| - 0.0028 16.9 0.0 0.0091 15.2 0.0 1.7 1 1 0 1 1 1 1 NB-ARC domain AAA_27 PF13514.6 gi|325968441|ref|YP_004244633.1| - 0.003 17.2 0.0 0.0052 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|325968441|ref|YP_004244633.1| - 0.0081 16.1 0.4 0.02 14.8 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|325968441|ref|YP_004244633.1| - 0.011 15.4 0.1 0.12 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|325968441|ref|YP_004244633.1| - 0.013 15.5 0.1 0.023 14.6 0.1 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|325968441|ref|YP_004244633.1| - 0.014 14.9 0.2 0.03 13.9 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|325968441|ref|YP_004244633.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|325968441|ref|YP_004244633.1| - 0.024 14.1 0.2 0.71 9.3 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_25 PF13481.6 gi|325968441|ref|YP_004244633.1| - 0.032 13.8 0.0 0.61 9.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_35 PF14516.6 gi|325968441|ref|YP_004244633.1| - 0.036 12.9 0.0 0.049 12.5 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.6 gi|325968441|ref|YP_004244633.1| - 0.07 13.5 0.2 0.27 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain RecA PF00154.21 gi|325968441|ref|YP_004244633.1| - 0.079 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_10 PF12846.7 gi|325968441|ref|YP_004244633.1| - 0.13 11.1 0.0 0.46 9.4 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain DUF3584 PF12128.8 gi|325968441|ref|YP_004244633.1| - 0.14 9.7 0.1 0.19 9.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.6 gi|325968441|ref|YP_004244633.1| - 0.17 12.1 0.1 0.41 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|325968441|ref|YP_004244633.1| - 0.17 11.2 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.6 gi|325968441|ref|YP_004244633.1| - 0.2 11.4 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AFOR_C PF01314.18 gi|325968442|ref|YP_004244634.1| - 1.6e-110 369.7 0.1 1.9e-110 369.4 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|325968442|ref|YP_004244634.1| - 1.7e-72 243.5 0.0 3.5e-72 242.4 0.0 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Cob_adeno_trans PF01923.18 gi|325968443|ref|YP_004244635.1| - 0.0045 17.1 0.0 0.0066 16.6 0.0 1.2 1 0 0 1 1 1 1 Cobalamin adenosyltransferase MM_CoA_mutase PF01642.22 gi|325968444|ref|YP_004244636.1| - 2.2e-208 693.0 0.0 2.5e-208 692.8 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase KorB PF08535.10 gi|325968444|ref|YP_004244636.1| - 0.12 12.4 0.1 0.61 10.2 0.1 2.2 2 0 0 2 2 2 0 KorB domain B12-binding PF02310.19 gi|325968445|ref|YP_004244637.1| - 6.9e-25 87.4 0.2 8.2e-25 87.2 0.2 1.0 1 0 0 1 1 1 1 B12 binding domain PGM_PMM_I PF02878.16 gi|325968445|ref|YP_004244637.1| - 0.0019 17.9 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CBS PF00571.28 gi|325968445|ref|YP_004244637.1| - 0.0066 16.9 0.1 0.39 11.2 0.0 2.9 3 0 0 3 3 3 1 CBS domain LpxI_N PF17930.1 gi|325968445|ref|YP_004244637.1| - 0.034 14.0 0.2 0.12 12.3 0.1 1.8 1 1 0 1 1 1 0 LpxI N-terminal domain Nitro_FeMo-Co PF02579.17 gi|325968445|ref|YP_004244637.1| - 0.11 12.9 0.2 7.1 7.0 0.0 2.2 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Antimicrobial20 PF08256.11 gi|325968445|ref|YP_004244637.1| - 5.4 7.8 7.1 1.5 9.5 2.7 2.6 2 0 0 2 2 2 0 Aurein-like antibiotic peptide MeaB PF03308.16 gi|325968446|ref|YP_004244638.1| - 4e-72 242.4 0.0 5.6e-71 238.6 0.0 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Glyoxalase_4 PF13669.6 gi|325968446|ref|YP_004244638.1| - 5.7e-21 74.8 0.0 1.1e-20 73.9 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|325968446|ref|YP_004244638.1| - 3.8e-11 43.4 0.0 6e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|325968446|ref|YP_004244638.1| - 1.2e-09 38.4 0.0 2.4e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily cobW PF02492.19 gi|325968446|ref|YP_004244638.1| - 7.5e-08 32.1 0.0 3.6e-07 29.9 0.0 2.1 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|325968446|ref|YP_004244638.1| - 9.7e-05 22.9 0.0 0.00019 22.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter T2SSE PF00437.20 gi|325968446|ref|YP_004244638.1| - 0.00022 20.4 0.0 0.0004 19.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF87 PF01935.17 gi|325968446|ref|YP_004244638.1| - 0.00096 19.3 0.0 0.0017 18.5 0.0 1.8 2 1 0 2 2 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|325968446|ref|YP_004244638.1| - 0.0018 18.5 0.0 0.0047 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|325968446|ref|YP_004244638.1| - 0.0026 17.8 0.0 0.0069 16.5 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|325968446|ref|YP_004244638.1| - 0.0029 18.1 0.2 0.038 14.5 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|325968446|ref|YP_004244638.1| - 0.0037 17.7 0.0 0.0099 16.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|325968446|ref|YP_004244638.1| - 0.0039 16.9 0.2 0.011 15.4 0.2 1.8 1 1 0 1 1 1 1 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|325968446|ref|YP_004244638.1| - 0.0044 16.8 0.0 0.016 15.0 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein KAP_NTPase PF07693.14 gi|325968446|ref|YP_004244638.1| - 0.0059 15.9 0.0 0.0092 15.3 0.0 1.3 1 0 0 1 1 1 1 KAP family P-loop domain NTPase_1 PF03266.15 gi|325968446|ref|YP_004244638.1| - 0.0064 16.4 0.1 0.015 15.2 0.1 1.6 1 0 0 1 1 1 1 NTPase AAA_24 PF13479.6 gi|325968446|ref|YP_004244638.1| - 0.0089 15.8 0.1 0.023 14.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain RNA_helicase PF00910.22 gi|325968446|ref|YP_004244638.1| - 0.013 15.8 0.1 0.039 14.3 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_14 PF13173.6 gi|325968446|ref|YP_004244638.1| - 0.017 15.1 0.0 0.041 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|325968446|ref|YP_004244638.1| - 0.018 15.4 0.1 0.03 14.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|325968446|ref|YP_004244638.1| - 0.026 14.6 0.0 0.043 13.9 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|325968446|ref|YP_004244638.1| - 0.028 14.2 0.0 0.063 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|325968446|ref|YP_004244638.1| - 0.046 13.7 0.1 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|325968446|ref|YP_004244638.1| - 0.058 13.0 0.0 0.2 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|325968446|ref|YP_004244638.1| - 0.062 13.7 0.0 0.23 11.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|325968446|ref|YP_004244638.1| - 0.069 12.5 0.0 0.16 11.4 0.0 1.6 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI DUF1338 PF07063.13 gi|325968446|ref|YP_004244638.1| - 0.076 12.2 0.0 11 5.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1338) AAA_7 PF12775.7 gi|325968446|ref|YP_004244638.1| - 0.077 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|325968446|ref|YP_004244638.1| - 0.084 13.0 0.0 0.18 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|325968446|ref|YP_004244638.1| - 0.098 11.8 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_11 PF13086.6 gi|325968446|ref|YP_004244638.1| - 0.11 12.3 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|325968446|ref|YP_004244638.1| - 0.11 11.4 0.0 0.19 10.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.12 gi|325968446|ref|YP_004244638.1| - 0.12 12.3 0.0 0.4 10.6 0.0 1.9 1 0 0 1 1 1 0 NACHT domain PRK PF00485.18 gi|325968446|ref|YP_004244638.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.6 gi|325968446|ref|YP_004244638.1| - 0.13 12.7 0.0 0.44 11.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|325968446|ref|YP_004244638.1| - 0.15 11.7 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|325968446|ref|YP_004244638.1| - 0.17 11.1 0.3 0.39 10.0 0.0 1.6 2 0 0 2 2 1 0 Zeta toxin AAA_23 PF13476.6 gi|325968446|ref|YP_004244638.1| - 0.21 12.1 0.1 0.41 11.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF2070 PF09843.9 gi|325968447|ref|YP_004244639.1| - 3e-113 379.1 10.5 3.4e-113 378.9 10.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2153 PF09921.9 gi|325968448|ref|YP_004244640.1| - 1e-44 151.3 1.4 1.2e-44 151.0 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Penicillinase_R PF03965.16 gi|325968449|ref|YP_004244641.1| - 3.5e-11 43.5 0.1 4.4e-11 43.2 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor PadR PF03551.14 gi|325968449|ref|YP_004244641.1| - 0.015 15.3 0.1 0.024 14.6 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Sulfolobus_pRN PF05584.11 gi|325968449|ref|YP_004244641.1| - 0.025 14.6 0.5 0.046 13.8 0.1 1.7 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein FUR PF01475.19 gi|325968449|ref|YP_004244641.1| - 0.03 14.4 0.2 0.038 14.1 0.2 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|325968449|ref|YP_004244641.1| - 0.061 13.2 0.1 0.11 12.4 0.1 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Met_10 PF02475.16 gi|325968450|ref|YP_004244642.1| - 3.5e-49 167.3 0.0 4.3e-49 167.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.16 gi|325968450|ref|YP_004244642.1| - 0.0021 17.3 0.0 0.0028 16.9 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|325968450|ref|YP_004244642.1| - 0.0055 16.3 0.0 0.0081 15.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase ATP-synt_ab PF00006.25 gi|325968451|ref|YP_004244643.1| - 1.7e-65 220.6 0.0 2.3e-65 220.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|325968451|ref|YP_004244643.1| - 3.3e-07 30.7 1.8 5.7e-07 30.0 1.8 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Phage-MuB_C PF09077.11 gi|325968451|ref|YP_004244643.1| - 0.041 13.8 0.0 0.53 10.2 0.0 2.3 2 0 0 2 2 2 0 Mu B transposition protein, C terminal RHH_1 PF01402.21 gi|325968452|ref|YP_004244644.1| - 5.9e-11 41.9 0.1 1.2e-10 40.9 0.0 1.5 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|325968452|ref|YP_004244644.1| - 0.0014 18.8 0.0 0.0015 18.7 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family Flavoprotein PF02441.19 gi|325968453|ref|YP_004244645.1| - 5.1e-30 104.3 0.1 6.3e-30 104.0 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein ATP_bind_3 PF01171.20 gi|325968454|ref|YP_004244646.1| - 1.2e-10 41.5 0.0 2.2e-10 40.6 0.0 1.4 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|325968454|ref|YP_004244646.1| - 0.00013 22.0 0.0 0.00023 21.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|325968454|ref|YP_004244646.1| - 0.0035 16.9 2.0 0.0044 16.5 0.1 2.1 2 0 0 2 2 2 1 RecR protein zn-ribbon_14 PF16503.5 gi|325968454|ref|YP_004244646.1| - 0.027 14.0 1.5 0.027 14.0 1.5 2.4 2 0 0 2 2 2 0 Zinc-ribbon tRNA_Me_trans PF03054.16 gi|325968454|ref|YP_004244646.1| - 0.094 11.5 0.0 0.15 10.8 0.0 1.3 1 1 0 1 1 1 0 tRNA methyl transferase DZR PF12773.7 gi|325968454|ref|YP_004244646.1| - 0.18 11.9 6.8 4.4 7.4 1.2 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-C4pol PF14260.6 gi|325968454|ref|YP_004244646.1| - 0.41 11.1 3.2 21 5.7 0.5 2.6 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-B_box PF00643.24 gi|325968454|ref|YP_004244646.1| - 1.2 9.3 4.0 2.3 8.4 0.1 2.4 2 0 0 2 2 2 0 B-box zinc finger zf-ribbon_3 PF13248.6 gi|325968454|ref|YP_004244646.1| - 8.9 5.9 9.5 18 4.9 2.5 3.4 3 0 0 3 3 3 0 zinc-ribbon domain tRNA-synt_1 PF00133.22 gi|325968455|ref|YP_004244647.1| - 5.7e-118 394.8 0.0 1.2e-116 390.3 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|325968455|ref|YP_004244647.1| - 5.2e-28 97.9 0.0 1e-27 97.0 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|325968455|ref|YP_004244647.1| - 2.3e-27 95.7 0.0 1.4e-15 57.0 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|325968455|ref|YP_004244647.1| - 0.0053 16.3 0.0 0.11 12.0 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|325968455|ref|YP_004244647.1| - 0.057 12.3 0.0 1.9 7.3 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) EF1_GNE PF00736.19 gi|325968457|ref|YP_004244649.1| - 2.5e-14 53.2 0.1 2.8e-14 53.1 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain Peptidase_M10 PF00413.24 gi|325968457|ref|YP_004244649.1| - 0.11 12.3 0.0 0.13 12.1 0.0 1.0 1 0 0 1 1 1 0 Matrixin AAA PF00004.29 gi|325968458|ref|YP_004244650.1| - 3.3e-99 328.5 0.0 7.1e-49 165.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|325968458|ref|YP_004244650.1| - 1.8e-30 105.0 0.9 6.3e-29 100.0 1.3 2.8 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|325968458|ref|YP_004244650.1| - 5.2e-30 103.0 8.9 3.3e-16 58.8 0.2 3.4 3 1 0 3 3 2 2 AAA+ lid domain RuvB_N PF05496.12 gi|325968458|ref|YP_004244650.1| - 2.1e-15 56.8 0.0 3.4e-07 30.1 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|325968458|ref|YP_004244650.1| - 1.9e-13 51.1 0.2 1.5e-05 25.4 0.0 4.1 3 1 1 4 4 4 2 AAA ATPase domain AAA_2 PF07724.14 gi|325968458|ref|YP_004244650.1| - 7.8e-13 48.9 0.0 3.6e-06 27.2 0.0 3.3 3 1 0 3 3 3 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|325968458|ref|YP_004244650.1| - 8.2e-13 48.5 0.7 3.7e-05 23.7 0.2 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|325968458|ref|YP_004244650.1| - 3.1e-12 46.9 0.2 0.00027 21.2 0.0 4.1 3 1 1 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|325968458|ref|YP_004244650.1| - 7.2e-11 42.4 0.0 0.00011 22.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|325968458|ref|YP_004244650.1| - 7.7e-11 42.2 0.0 8.7e-05 22.6 0.0 2.9 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.17 gi|325968458|ref|YP_004244650.1| - 1.7e-10 40.5 0.3 6.4e-10 38.7 0.3 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 UFD1 PF03152.14 gi|325968458|ref|YP_004244650.1| - 2e-09 37.2 0.2 3.8e-09 36.3 0.2 1.4 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 TIP49 PF06068.13 gi|325968458|ref|YP_004244650.1| - 4.7e-09 35.9 4.4 0.00082 18.7 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|325968458|ref|YP_004244650.1| - 1.8e-08 34.4 0.0 0.0092 15.7 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|325968458|ref|YP_004244650.1| - 4.1e-08 33.8 0.0 0.017 15.7 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|325968458|ref|YP_004244650.1| - 9.4e-08 32.5 0.0 0.007 16.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|325968458|ref|YP_004244650.1| - 2.4e-07 30.6 0.0 0.00089 19.2 0.0 3.1 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain Mg_chelatase PF01078.21 gi|325968458|ref|YP_004244650.1| - 4.4e-07 29.5 0.9 0.027 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|325968458|ref|YP_004244650.1| - 1.3e-06 28.2 0.0 0.05 13.3 0.0 3.4 4 0 0 4 4 3 2 AAA domain Sigma54_activat PF00158.26 gi|325968458|ref|YP_004244650.1| - 1.8e-06 27.8 0.1 0.12 12.0 0.0 3.4 2 2 0 2 2 2 2 Sigma-54 interaction domain PhoH PF02562.16 gi|325968458|ref|YP_004244650.1| - 5.5e-06 26.0 0.5 0.099 12.1 0.1 2.8 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.22 gi|325968458|ref|YP_004244650.1| - 1.3e-05 25.6 0.0 0.23 11.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.6 gi|325968458|ref|YP_004244650.1| - 1.4e-05 24.7 2.3 1.1 8.8 0.0 4.2 4 0 0 4 4 4 2 AAA domain AAA_7 PF12775.7 gi|325968458|ref|YP_004244650.1| - 1.4e-05 24.6 0.1 0.15 11.5 0.1 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|325968458|ref|YP_004244650.1| - 1.5e-05 24.3 0.0 0.1 11.7 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|325968458|ref|YP_004244650.1| - 1.7e-05 24.2 0.3 0.26 10.5 0.0 3.1 3 0 0 3 3 3 2 Zeta toxin ABC_tran PF00005.27 gi|325968458|ref|YP_004244650.1| - 2.2e-05 25.0 0.0 0.21 12.1 0.0 2.6 2 0 0 2 2 2 2 ABC transporter ATPase PF06745.13 gi|325968458|ref|YP_004244650.1| - 3.1e-05 23.4 3.4 0.23 10.8 0.0 3.8 2 2 1 3 3 3 2 KaiC TsaE PF02367.17 gi|325968458|ref|YP_004244650.1| - 9.7e-05 22.4 0.0 0.78 9.7 0.0 2.7 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Guanylate_kin PF00625.21 gi|325968458|ref|YP_004244650.1| - 0.00023 20.9 0.2 20 4.8 0.0 4.6 2 2 2 4 4 4 0 Guanylate kinase AAA_3 PF07726.11 gi|325968458|ref|YP_004244650.1| - 0.00029 20.7 0.0 1 9.2 0.0 2.9 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|325968458|ref|YP_004244650.1| - 0.00054 20.3 1.2 1.3 9.4 0.1 3.1 3 0 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|325968458|ref|YP_004244650.1| - 0.00068 19.6 1.0 1.1 9.1 0.1 3.1 3 0 0 3 3 3 1 NACHT domain Parvo_NS1 PF01057.17 gi|325968458|ref|YP_004244650.1| - 0.00082 18.5 0.2 1.1 8.2 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|325968458|ref|YP_004244650.1| - 0.00098 18.9 0.4 1.3 8.7 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|325968458|ref|YP_004244650.1| - 0.0017 18.2 0.1 2.1 8.1 0.0 2.7 3 0 0 3 3 2 1 AAA domain Bac_DnaA PF00308.18 gi|325968458|ref|YP_004244650.1| - 0.0017 18.2 0.0 1.2 8.9 0.0 3.5 4 1 0 4 4 3 1 Bacterial dnaA protein DUF2075 PF09848.9 gi|325968458|ref|YP_004244650.1| - 0.0028 16.9 0.1 1.4 8.0 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|325968458|ref|YP_004244650.1| - 0.0038 17.3 0.0 1.6 8.9 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain PduV-EutP PF10662.9 gi|325968458|ref|YP_004244650.1| - 0.011 15.5 0.0 2.6 7.8 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.6 gi|325968458|ref|YP_004244650.1| - 0.013 15.9 0.5 12 6.3 0.0 3.5 4 0 0 4 4 2 0 AAA domain ATP-synt_ab PF00006.25 gi|325968458|ref|YP_004244650.1| - 0.015 14.9 0.0 7.6 6.1 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SSE PF00437.20 gi|325968458|ref|YP_004244650.1| - 0.017 14.2 0.0 4.7 6.2 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|325968458|ref|YP_004244650.1| - 0.017 14.3 0.0 10 5.2 0.0 3.0 3 0 0 3 3 3 0 NB-ARC domain AAA_29 PF13555.6 gi|325968458|ref|YP_004244650.1| - 0.022 14.5 0.0 7.2 6.4 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain ResIII PF04851.15 gi|325968458|ref|YP_004244650.1| - 0.028 14.4 0.0 12 5.9 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit SRPRB PF09439.10 gi|325968458|ref|YP_004244650.1| - 0.031 13.7 0.0 3.6 7.0 0.0 2.7 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Cytidylate_kin PF02224.18 gi|325968458|ref|YP_004244650.1| - 0.039 13.7 0.5 11 5.7 0.0 3.0 3 0 0 3 3 3 0 Cytidylate kinase DUF4175 PF13779.6 gi|325968458|ref|YP_004244650.1| - 0.039 11.9 1.2 0.06 11.3 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Viral_helicase1 PF01443.18 gi|325968458|ref|YP_004244650.1| - 0.042 13.6 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase MCM PF00493.23 gi|325968458|ref|YP_004244650.1| - 0.052 12.6 0.0 8.2 5.4 0.0 2.5 2 0 0 2 2 2 0 MCM P-loop domain cobW PF02492.19 gi|325968458|ref|YP_004244650.1| - 0.055 13.1 0.0 14 5.3 0.0 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AFG1_ATPase PF03969.16 gi|325968458|ref|YP_004244650.1| - 0.13 11.1 0.1 9.4 5.0 0.0 2.6 3 0 0 3 3 2 0 AFG1-like ATPase SKI PF01202.22 gi|325968458|ref|YP_004244650.1| - 0.13 12.4 0.0 22 5.1 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase IPT PF01745.16 gi|325968458|ref|YP_004244650.1| - 0.15 11.5 0.3 14 4.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Roc PF08477.13 gi|325968458|ref|YP_004244650.1| - 0.16 12.2 0.0 12 6.1 0.0 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|325968458|ref|YP_004244650.1| - 0.74 9.7 8.7 16 5.4 0.0 4.6 4 1 1 5 5 5 0 NTPase CARD_2 PF16739.5 gi|325968459|ref|YP_004244651.1| - 0.11 12.6 0.3 0.19 11.7 0.1 1.5 1 1 1 2 2 2 0 Caspase recruitment domain XPG_I PF00867.18 gi|325968460|ref|YP_004244652.1| - 1.6e-23 82.9 0.0 2.6e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|325968460|ref|YP_004244652.1| - 2.3e-19 69.7 0.0 4.6e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|325968460|ref|YP_004244652.1| - 3.7e-07 30.6 0.0 1.2e-06 29.0 0.0 1.8 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|325968460|ref|YP_004244652.1| - 0.0024 18.5 0.0 0.0078 16.8 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|325968460|ref|YP_004244652.1| - 0.02 15.0 0.0 0.08 13.1 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif DUF2671 PF10877.8 gi|325968460|ref|YP_004244652.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2671) NADHdh PF00146.21 gi|325968461|ref|YP_004244653.1| - 2.3e-84 283.2 22.8 3.4e-84 282.7 22.8 1.2 1 0 0 1 1 1 1 NADH dehydrogenase zf-C2H2_4 PF13894.6 gi|325968462|ref|YP_004244654.1| - 9.6e-05 22.9 0.1 0.00023 21.7 0.1 1.7 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2HC_2 PF13913.6 gi|325968462|ref|YP_004244654.1| - 0.00023 21.0 0.0 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 zinc-finger of a C2HC-type zf-C2H2 PF00096.26 gi|325968462|ref|YP_004244654.1| - 0.00031 21.0 0.0 0.00067 20.0 0.0 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_9 PF16293.5 gi|325968462|ref|YP_004244654.1| - 0.0039 17.0 0.2 0.0045 16.8 0.2 1.2 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) zf-C2H2_jaz PF12171.8 gi|325968462|ref|YP_004244654.1| - 0.0061 16.8 0.1 0.013 15.8 0.0 1.5 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf-Di19 PF05605.12 gi|325968462|ref|YP_004244654.1| - 0.011 16.0 0.1 0.016 15.5 0.1 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn-C2H2_12 PF18112.1 gi|325968462|ref|YP_004244654.1| - 0.1 13.1 0.1 0.26 11.8 0.1 1.7 1 0 0 1 1 1 0 Autophagy receptor zinc finger-C2H2 domain RE_MjaI PF09568.10 gi|325968463|ref|YP_004244655.1| - 0.055 13.3 2.2 0.095 12.5 2.0 1.4 1 1 0 1 1 1 0 MjaI restriction endonuclease DUF5102 PF17104.5 gi|325968464|ref|YP_004244656.1| - 0.011 15.8 1.1 0.012 15.6 1.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5102) DUF3581 PF12119.8 gi|325968464|ref|YP_004244656.1| - 0.019 14.3 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3581) CHD5 PF04420.14 gi|325968464|ref|YP_004244656.1| - 0.04 13.8 1.3 0.057 13.3 1.3 1.2 1 0 0 1 1 1 0 CHD5-like protein WHEP-TRS PF00458.20 gi|325968464|ref|YP_004244656.1| - 0.044 14.0 0.8 0.084 13.0 0.8 1.5 1 0 0 1 1 1 0 WHEP-TRS domain TBPIP PF07106.13 gi|325968464|ref|YP_004244656.1| - 0.051 13.5 0.6 0.097 12.6 0.3 1.7 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain Lip_prot_lig_C PF10437.9 gi|325968464|ref|YP_004244656.1| - 0.051 13.6 0.5 9.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus DUF1818 PF08848.11 gi|325968464|ref|YP_004244656.1| - 0.054 13.6 1.7 5.1 7.2 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1818) Snapin_Pallidin PF14712.6 gi|325968464|ref|YP_004244656.1| - 0.14 12.6 7.0 0.16 12.4 4.7 2.0 1 1 0 2 2 2 0 Snapin/Pallidin FlaC_arch PF05377.11 gi|325968464|ref|YP_004244656.1| - 0.42 11.0 3.3 0.3 11.5 0.8 2.0 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) BRE1 PF08647.11 gi|325968464|ref|YP_004244656.1| - 0.5 10.5 8.9 0.1 12.7 1.5 2.1 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase AAA_23 PF13476.6 gi|325968464|ref|YP_004244656.1| - 0.59 10.6 5.8 0.63 10.5 5.8 1.1 1 0 0 1 1 1 0 AAA domain AA_permease_2 PF13520.6 gi|325968465|ref|YP_004244657.1| - 2.5e-34 118.8 52.7 2.5e-34 118.8 52.7 2.4 1 1 0 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|325968465|ref|YP_004244657.1| - 3.7e-20 72.0 40.0 3.7e-20 72.0 40.0 3.0 2 1 1 3 3 3 1 Amino acid permease AA_permease_2 PF13520.6 gi|325968466|ref|YP_004244658.1| - 6.6e-39 133.9 65.4 6.6e-39 133.9 65.4 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|325968466|ref|YP_004244658.1| - 1.3e-19 70.2 69.7 1.3e-19 70.2 69.7 2.3 1 1 2 3 3 3 1 Amino acid permease DUF5090 PF17009.5 gi|325968466|ref|YP_004244658.1| - 0.02 14.8 1.9 0.02 14.8 1.9 3.9 3 1 1 4 4 4 0 Domain of unknown function (DUF5090) ENOD93 PF03386.14 gi|325968466|ref|YP_004244658.1| - 1.6 8.7 4.4 1.5 8.8 0.7 2.9 2 0 0 2 2 2 0 Early nodulin 93 ENOD93 protein Pyr_redox_2 PF07992.14 gi|325968467|ref|YP_004244659.1| - 5.1e-54 183.5 2.5 6.4e-54 183.2 2.5 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|325968467|ref|YP_004244659.1| - 1.2e-27 96.3 0.1 2.2e-27 95.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|325968467|ref|YP_004244659.1| - 6e-20 71.6 6.9 3.3e-19 69.2 0.7 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|325968467|ref|YP_004244659.1| - 4.1e-16 59.1 0.7 7.9e-16 58.2 0.7 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|325968467|ref|YP_004244659.1| - 1.4e-12 47.4 8.3 3.3e-09 36.3 0.1 3.5 2 1 1 3 3 3 3 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|325968467|ref|YP_004244659.1| - 5.7e-07 29.2 3.2 3.6e-05 23.3 0.0 3.2 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|325968467|ref|YP_004244659.1| - 1.3e-06 27.8 1.7 0.0012 18.2 0.2 2.5 2 0 0 2 2 2 2 Thi4 family HI0933_like PF03486.14 gi|325968467|ref|YP_004244659.1| - 1.7e-06 27.0 9.1 0.002 16.9 0.5 3.8 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|325968467|ref|YP_004244659.1| - 6.1e-06 25.6 10.5 1.6e-05 24.2 0.6 4.0 3 1 1 4 4 4 1 FAD binding domain FAD_binding_3 PF01494.19 gi|325968467|ref|YP_004244659.1| - 1.3e-05 24.6 7.2 0.014 14.7 1.4 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|325968467|ref|YP_004244659.1| - 0.0014 18.8 5.9 0.1 12.8 2.4 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|325968467|ref|YP_004244659.1| - 0.0022 17.2 1.0 0.021 14.0 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|325968467|ref|YP_004244659.1| - 0.0027 17.3 16.9 0.13 11.8 0.0 3.6 3 1 1 4 4 4 2 FAD dependent oxidoreductase ThiF PF00899.21 gi|325968467|ref|YP_004244659.1| - 0.0043 16.5 0.6 0.98 8.7 0.1 2.4 2 0 0 2 2 2 2 ThiF family UDPG_MGDP_dh_N PF03721.14 gi|325968467|ref|YP_004244659.1| - 0.04 13.5 0.5 0.04 13.5 0.5 2.2 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|325968467|ref|YP_004244659.1| - 0.044 12.8 6.7 1.5 7.8 0.3 2.8 2 1 1 3 3 3 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|325968467|ref|YP_004244659.1| - 0.12 12.8 1.1 10 6.6 0.1 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|325968467|ref|YP_004244659.1| - 0.79 9.6 6.0 0.22 11.4 0.2 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|325968467|ref|YP_004244659.1| - 0.88 8.8 5.0 0.33 10.2 0.4 2.2 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AAA_5 PF07728.14 gi|325968468|ref|YP_004244660.1| - 5.1e-27 94.6 0.2 2.5e-26 92.3 0.0 2.2 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|325968468|ref|YP_004244660.1| - 3.2e-06 27.6 0.1 2.4e-05 24.8 0.0 2.4 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|325968468|ref|YP_004244660.1| - 2.8e-05 24.0 0.0 6.8e-05 22.7 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF4363 PF14276.6 gi|325968468|ref|YP_004244660.1| - 0.0002 21.5 0.8 0.00047 20.2 0.8 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4363) IstB_IS21 PF01695.17 gi|325968468|ref|YP_004244660.1| - 0.00038 20.2 0.0 0.00062 19.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|325968468|ref|YP_004244660.1| - 0.0011 19.4 0.0 0.0058 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain T2SSE PF00437.20 gi|325968468|ref|YP_004244660.1| - 0.016 14.3 0.0 0.041 12.9 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|325968468|ref|YP_004244660.1| - 0.019 15.3 0.1 1.7 8.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|325968468|ref|YP_004244660.1| - 0.02 14.7 0.0 0.05 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|325968468|ref|YP_004244660.1| - 0.022 14.3 0.0 0.039 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Ribonuc_L-PSP PF01042.21 gi|325968468|ref|YP_004244660.1| - 0.032 14.3 0.0 0.39 10.7 0.0 2.6 3 0 0 3 3 3 0 Endoribonuclease L-PSP AAA_30 PF13604.6 gi|325968468|ref|YP_004244660.1| - 0.032 13.9 0.0 0.095 12.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|325968468|ref|YP_004244660.1| - 0.042 13.2 0.0 0.098 12.0 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|325968468|ref|YP_004244660.1| - 0.042 13.6 0.3 0.42 10.3 0.0 2.5 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_29 PF13555.6 gi|325968468|ref|YP_004244660.1| - 0.047 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|325968468|ref|YP_004244660.1| - 0.056 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|325968468|ref|YP_004244660.1| - 0.14 12.5 3.3 2 8.7 0.2 3.2 2 1 0 2 2 2 0 AAA domain Glycos_transf_2 PF00535.26 gi|325968470|ref|YP_004244662.1| - 2.1e-15 57.0 0.0 3e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|325968470|ref|YP_004244662.1| - 3.7e-15 55.8 0.0 6.1e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|325968470|ref|YP_004244662.1| - 2.5e-14 53.7 0.0 3.6e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|325968470|ref|YP_004244662.1| - 0.083 12.8 10.6 0.2 11.5 10.6 1.8 1 1 0 1 1 1 0 Glycosyl transferase family group 2 NAD_binding_2 PF03446.15 gi|325968471|ref|YP_004244663.1| - 4.3e-37 127.7 0.2 5.9e-37 127.3 0.2 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|325968471|ref|YP_004244663.1| - 4.9e-26 91.4 0.0 7.5e-26 90.8 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|325968471|ref|YP_004244663.1| - 7.7e-05 22.1 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|325968471|ref|YP_004244663.1| - 9.6e-05 22.5 0.0 0.00018 21.6 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|325968471|ref|YP_004244663.1| - 0.00018 22.0 0.0 0.0008 20.0 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|325968471|ref|YP_004244663.1| - 0.00022 20.8 0.0 0.00033 20.3 0.0 1.5 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|325968471|ref|YP_004244663.1| - 0.016 16.1 0.0 0.03 15.1 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|325968471|ref|YP_004244663.1| - 0.039 14.4 1.0 1.3 9.5 0.2 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding Raffinose_syn PF05691.12 gi|325968473|ref|YP_004244665.1| - 4.1e-45 153.8 1.4 4.5e-27 94.2 0.0 3.2 1 1 2 4 4 4 2 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.18 gi|325968473|ref|YP_004244665.1| - 3.1e-06 26.4 0.2 5.5e-06 25.6 0.2 1.3 1 0 0 1 1 1 1 Melibiase Melibiase_2 PF16499.5 gi|325968473|ref|YP_004244665.1| - 0.0026 17.0 0.0 0.0053 16.0 0.0 1.5 1 0 0 1 1 1 1 Alpha galactosidase A MS_channel PF00924.18 gi|325968474|ref|YP_004244666.1| - 4.8e-16 58.9 2.8 4.8e-16 58.9 2.8 2.2 3 0 0 3 3 3 1 Mechanosensitive ion channel FtsK_4TM PF13491.6 gi|325968474|ref|YP_004244666.1| - 1.2 8.8 11.9 0.054 13.2 3.3 2.1 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE AFOR_C PF01314.18 gi|325968475|ref|YP_004244667.1| - 4.5e-121 404.4 0.0 5.5e-121 404.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|325968475|ref|YP_004244667.1| - 1e-68 231.1 0.0 1.7e-68 230.4 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DSPc PF00782.20 gi|325968476|ref|YP_004244668.1| - 3.7e-19 68.9 0.0 4.3e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PTPlike_phytase PF14566.6 gi|325968476|ref|YP_004244668.1| - 1e-05 25.7 0.0 1.4e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase PF00102.27 gi|325968476|ref|YP_004244668.1| - 1.6e-05 24.6 0.0 2.3e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|325968476|ref|YP_004244668.1| - 0.00075 19.2 0.0 0.00095 18.9 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) DUF442 PF04273.13 gi|325968476|ref|YP_004244668.1| - 0.043 13.9 0.0 0.076 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative phosphatase (DUF442) Sugar_tr PF00083.24 gi|325968477|ref|YP_004244669.1| - 2.6e-15 56.2 37.7 3.7e-14 52.5 14.4 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|325968477|ref|YP_004244669.1| - 2.6e-12 46.3 53.5 2.6e-12 46.3 53.5 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily OATP PF03137.20 gi|325968477|ref|YP_004244669.1| - 0.97 7.6 10.3 0.04 12.2 4.7 1.5 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family HKR_ArcB_TM PF18415.1 gi|325968477|ref|YP_004244669.1| - 2.3 9.1 6.1 1.8 9.4 2.0 3.2 2 0 0 2 2 2 0 Histidine kinase receptor ArcB trans-membrane domain RIO1 PF01163.22 gi|325968478|ref|YP_004244670.1| - 4.6e-45 153.5 0.0 6.5e-45 153.0 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|325968478|ref|YP_004244670.1| - 5.5e-23 81.0 0.1 1.3e-22 79.8 0.1 1.7 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|325968478|ref|YP_004244670.1| - 4.4e-08 33.4 0.6 0.0014 18.6 0.3 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_fungal PF17667.1 gi|325968478|ref|YP_004244670.1| - 0.0014 17.5 0.0 0.0021 16.9 0.0 1.3 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|325968478|ref|YP_004244670.1| - 0.015 14.7 0.1 0.2 11.0 0.1 2.2 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|325968478|ref|YP_004244670.1| - 0.021 14.2 0.0 0.033 13.5 0.0 1.4 1 1 0 1 1 1 0 Protein kinase domain HrcA_DNA-bdg PF03444.15 gi|325968478|ref|YP_004244670.1| - 0.089 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|325968478|ref|YP_004244670.1| - 0.11 12.9 0.0 0.34 11.3 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|325968478|ref|YP_004244670.1| - 0.14 12.1 0.4 1.2 9.1 0.0 2.6 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF460 PF04312.13 gi|325968479|ref|YP_004244671.1| - 4.2e-47 159.4 1.8 4.2e-47 159.4 1.8 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) AAA_13 PF13166.6 gi|325968479|ref|YP_004244671.1| - 0.0051 15.5 3.1 0.0072 15.0 3.1 1.1 1 0 0 1 1 1 1 AAA domain Fib_alpha PF08702.10 gi|325968479|ref|YP_004244671.1| - 0.0069 16.6 3.1 0.02 15.1 3.1 1.8 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family acVLRF1 PF18859.1 gi|325968479|ref|YP_004244671.1| - 0.013 15.8 0.1 0.053 13.8 0.0 2.0 2 1 1 3 3 2 0 Actinobacteria/chloroflexi VLRF1 release factor CALCOCO1 PF07888.11 gi|325968479|ref|YP_004244671.1| - 0.014 14.2 3.1 0.025 13.5 3.1 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF1664 PF07889.12 gi|325968479|ref|YP_004244671.1| - 0.08 13.0 3.6 11 6.1 0.9 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF1664) Cep57_MT_bd PF06657.13 gi|325968479|ref|YP_004244671.1| - 0.1 13.1 1.2 7.5 7.1 0.2 2.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 FliD_C PF07195.12 gi|325968479|ref|YP_004244671.1| - 0.11 11.9 0.1 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Prefoldin PF02996.17 gi|325968479|ref|YP_004244671.1| - 0.15 12.0 4.0 6.6 6.7 0.6 2.6 1 1 1 2 2 2 0 Prefoldin subunit Tropomyosin_1 PF12718.7 gi|325968479|ref|YP_004244671.1| - 0.16 12.1 6.1 0.13 12.4 1.2 2.4 1 1 1 2 2 2 0 Tropomyosin like TRAF_BIRC3_bd PF16673.5 gi|325968479|ref|YP_004244671.1| - 0.18 11.6 2.9 0.52 10.1 1.9 2.3 1 1 1 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain TMF_DNA_bd PF12329.8 gi|325968479|ref|YP_004244671.1| - 0.18 11.8 3.9 11 6.1 0.1 3.3 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Phasin PF05597.11 gi|325968479|ref|YP_004244671.1| - 0.2 11.7 2.0 0.76 9.8 2.0 2.1 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Fzo_mitofusin PF04799.13 gi|325968479|ref|YP_004244671.1| - 0.23 11.0 1.0 0.87 9.1 0.3 2.2 1 1 1 2 2 2 0 fzo-like conserved region DUF5082 PF16888.5 gi|325968479|ref|YP_004244671.1| - 0.26 11.6 5.0 5 7.4 0.9 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) TMF_TATA_bd PF12325.8 gi|325968479|ref|YP_004244671.1| - 0.57 10.4 5.6 20 5.4 0.0 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding Prefoldin_2 PF01920.20 gi|325968479|ref|YP_004244671.1| - 0.63 10.0 6.8 6.9 6.7 0.1 3.5 3 1 1 4 4 4 0 Prefoldin subunit Phage_Mu_Gam PF07352.12 gi|325968479|ref|YP_004244671.1| - 0.81 9.6 5.6 5 7.0 1.9 3.0 2 1 0 2 2 2 0 Bacteriophage Mu Gam like protein Prefoldin_3 PF13758.6 gi|325968479|ref|YP_004244671.1| - 0.97 9.5 7.5 1.1 9.4 5.3 2.3 2 1 0 2 2 2 0 Prefoldin subunit TolA_bind_tri PF16331.5 gi|325968479|ref|YP_004244671.1| - 1.3 9.2 3.4 9.1 6.4 0.6 2.8 1 1 1 2 2 2 0 TolA binding protein trimerisation FlaC_arch PF05377.11 gi|325968479|ref|YP_004244671.1| - 1.4 9.4 6.4 6.4 7.3 0.1 3.6 2 1 0 3 3 3 0 Flagella accessory protein C (FlaC) AdoMet_Synthase PF01941.19 gi|325968480|ref|YP_004244672.1| - 1.2e-173 577.5 3.0 1.3e-173 577.3 3.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.22 gi|325968481|ref|YP_004244673.1| - 6.6e-18 64.2 3.3 7.4e-18 64.0 3.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|325968481|ref|YP_004244673.1| - 1.9e-05 24.7 0.1 2.2e-05 24.5 0.1 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF2642 PF10842.8 gi|325968481|ref|YP_004244673.1| - 0.0079 16.0 0.9 0.033 14.0 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2642) RNA_pol_N PF01194.17 gi|325968482|ref|YP_004244674.1| - 2.7e-27 94.8 0.2 3.1e-27 94.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|325968482|ref|YP_004244674.1| - 0.00042 20.5 0.0 0.00056 20.1 0.0 1.2 1 0 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) HscB_4_cys PF18256.1 gi|325968482|ref|YP_004244674.1| - 0.0071 16.1 1.2 0.014 15.2 1.2 1.4 1 0 0 1 1 1 1 Co-chaperone HscB tetracysteine metal binding motif Ribosomal_S14 PF00253.21 gi|325968482|ref|YP_004244674.1| - 0.13 12.0 1.6 2.9 7.7 0.4 2.5 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e Ribosomal_S9 PF00380.19 gi|325968483|ref|YP_004244675.1| - 2.9e-32 111.7 0.1 3.4e-32 111.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|325968484|ref|YP_004244676.1| - 2e-12 47.4 0.3 1.3e-08 35.1 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|325968485|ref|YP_004244677.1| - 2.2e-06 27.2 0.0 2.6e-06 27.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|325968485|ref|YP_004244677.1| - 1.4e-05 25.7 0.1 2.2e-05 25.1 0.1 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A PUA_3 PF17785.1 gi|325968485|ref|YP_004244677.1| - 0.029 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 PUA-like domain RNA_pol_A_bac PF01000.26 gi|325968486|ref|YP_004244678.1| - 1.1e-26 93.4 0.0 2.6e-26 92.2 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|325968486|ref|YP_004244678.1| - 3.8e-13 48.7 0.0 5.6e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Stomagen PF16851.5 gi|325968486|ref|YP_004244678.1| - 0.075 13.0 0.1 0.24 11.5 0.1 1.8 1 0 0 1 1 1 0 Stomagen DUF3311 PF11755.8 gi|325968488|ref|YP_004244680.1| - 4.2e-10 39.4 11.7 4.9e-10 39.2 11.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Saf_2TM PF18303.1 gi|325968488|ref|YP_004244680.1| - 0.05 13.2 1.2 0.052 13.1 1.2 1.0 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain ATP1G1_PLM_MAT8 PF02038.16 gi|325968488|ref|YP_004244680.1| - 5.1 6.6 6.1 9.9 5.7 6.1 1.6 1 1 0 1 1 1 0 ATP1G1/PLM/MAT8 family Metallophos_2 PF12850.7 gi|325968489|ref|YP_004244681.1| - 3.7e-20 72.8 0.0 4.6e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|325968489|ref|YP_004244681.1| - 2.5e-16 59.8 0.2 2e-12 47.0 0.0 2.4 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|325968489|ref|YP_004244681.1| - 4.7e-13 50.1 2.5 1.3e-11 45.4 2.5 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase EndIII_4Fe-2S PF10576.9 gi|325968491|ref|YP_004244683.1| - 0.39 11.1 1.6 0.73 10.2 1.6 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III adh_short_C2 PF13561.6 gi|325968492|ref|YP_004244684.1| - 2.1e-52 178.0 0.0 3e-52 177.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|325968492|ref|YP_004244684.1| - 1.2e-40 139.1 0.0 1.4e-40 138.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|325968492|ref|YP_004244684.1| - 9.7e-11 41.9 0.2 1.8e-10 41.1 0.0 1.5 2 0 0 2 2 2 1 KR domain NAD_binding_10 PF13460.6 gi|325968492|ref|YP_004244684.1| - 8e-05 22.6 0.0 0.00013 22.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|325968492|ref|YP_004244684.1| - 0.0047 16.8 0.1 0.0079 16.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2621 PF11084.8 gi|325968492|ref|YP_004244684.1| - 0.016 15.2 0.0 0.047 13.7 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2621) Virulence_fact PF13769.6 gi|325968492|ref|YP_004244684.1| - 0.16 12.2 0.4 0.54 10.5 0.0 1.9 2 0 0 2 2 2 0 Virulence factor PAC2 PF09754.9 gi|325968493|ref|YP_004244685.1| - 3.9e-34 118.5 0.1 3.3e-33 115.5 0.1 1.9 1 1 0 1 1 1 1 PAC2 family VHS PF00790.19 gi|325968494|ref|YP_004244686.1| - 0.0026 17.6 1.0 0.9 9.4 0.1 2.7 2 0 0 2 2 2 2 VHS domain DUF3884 PF13024.6 gi|325968494|ref|YP_004244686.1| - 0.0083 15.7 0.1 0.065 12.8 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3884) Ald_Xan_dh_C2 PF02738.18 gi|325968495|ref|YP_004244687.1| - 3.3e-96 322.9 0.0 3.8e-96 322.7 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|325968495|ref|YP_004244687.1| - 1.9e-19 70.1 0.0 3.2e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Hexapep PF00132.24 gi|325968496|ref|YP_004244688.1| - 4e-18 64.4 35.3 6.7e-09 35.1 2.8 4.9 5 1 1 6 6 6 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|325968496|ref|YP_004244688.1| - 3.9e-09 36.1 34.2 7.6e-05 22.4 2.2 4.8 3 2 2 6 6 6 4 Hexapeptide repeat of succinyl-transferase Macro PF01661.21 gi|325968496|ref|YP_004244688.1| - 0.11 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Macro domain Glycos_transf_1 PF00534.20 gi|325968497|ref|YP_004244689.1| - 3.3e-21 75.6 0.0 1.4e-20 73.5 0.0 2.0 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968497|ref|YP_004244689.1| - 1.3e-15 58.0 0.0 2.6e-15 57.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325968497|ref|YP_004244689.1| - 1.7e-05 25.1 0.0 3.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968497|ref|YP_004244689.1| - 0.0066 16.5 0.1 0.12 12.3 0.1 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycogen_syn PF05693.13 gi|325968497|ref|YP_004244689.1| - 0.05 12.1 0.1 0.082 11.4 0.1 1.2 1 0 0 1 1 1 0 Glycogen synthase PGM_PMM_I PF02878.16 gi|325968498|ref|YP_004244690.1| - 2.9e-33 114.5 0.0 6.3e-33 113.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|325968498|ref|YP_004244690.1| - 2.7e-22 79.1 0.2 9.2e-22 77.4 0.1 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|325968498|ref|YP_004244690.1| - 3.4e-22 79.0 0.0 1.9e-21 76.6 0.0 2.3 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|325968498|ref|YP_004244690.1| - 5.5e-11 42.5 0.0 1.2e-10 41.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Peptidase_M42 PF05343.14 gi|325968499|ref|YP_004244691.1| - 2.4e-102 341.9 0.0 2.8e-102 341.7 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|325968499|ref|YP_004244691.1| - 3.5e-11 43.2 0.1 1e-10 41.7 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|325968499|ref|YP_004244691.1| - 2.1e-07 30.8 0.0 4.6e-06 26.5 0.0 2.3 2 0 0 2 2 2 1 Peptidase family M28 AIRC PF00731.20 gi|325968499|ref|YP_004244691.1| - 0.11 12.1 0.0 0.3 10.7 0.0 1.8 1 0 0 1 1 1 0 AIR carboxylase Peptidase_M18 PF02127.15 gi|325968499|ref|YP_004244691.1| - 0.17 10.6 0.0 0.31 9.8 0.0 1.4 1 1 0 1 1 1 0 Aminopeptidase I zinc metalloprotease (M18) Xan_ur_permease PF00860.20 gi|325968500|ref|YP_004244692.1| - 2.7e-25 88.9 52.7 2.7e-25 88.9 52.7 2.6 1 1 1 2 2 2 1 Permease family Peptidase_M1 PF01433.20 gi|325968501|ref|YP_004244693.1| - 1.6e-82 276.3 0.1 2.2e-82 275.9 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain ERAP1_C PF11838.8 gi|325968501|ref|YP_004244693.1| - 5.4e-27 95.2 0.0 9.1e-27 94.4 0.0 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Peptidase_M1_N PF17900.1 gi|325968501|ref|YP_004244693.1| - 2.4e-24 86.5 0.0 7.3e-24 85.0 0.0 1.8 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain GPAT_N PF14829.6 gi|325968501|ref|YP_004244693.1| - 0.0095 15.9 0.0 0.029 14.3 0.0 1.8 1 0 0 1 1 1 1 Glycerol-3-phosphate acyltransferase N-terminal Aminopep PF10023.9 gi|325968501|ref|YP_004244693.1| - 0.097 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative aminopeptidase Peptidase_M48 PF01435.18 gi|325968501|ref|YP_004244693.1| - 0.11 12.2 0.2 0.68 9.7 0.0 2.2 2 1 1 3 3 3 0 Peptidase family M48 NLE PF08154.12 gi|325968502|ref|YP_004244694.1| - 0.029 14.9 0.1 4.3 7.9 0.0 2.4 2 0 0 2 2 2 0 NLE (NUC135) domain SPOR PF05036.13 gi|325968502|ref|YP_004244694.1| - 0.15 12.4 0.0 0.5 10.8 0.0 1.9 1 0 0 1 1 1 0 Sporulation related domain ATP-synt_C PF00137.21 gi|325968503|ref|YP_004244695.1| - 8.2e-16 58.1 18.3 8.2e-16 58.1 18.3 1.8 2 0 0 2 2 2 1 ATP synthase subunit C CrgA PF06781.12 gi|325968503|ref|YP_004244695.1| - 0.14 12.3 0.4 0.14 12.3 0.4 2.0 2 0 0 2 2 2 0 Cell division protein CrgA Tetraspanin PF00335.20 gi|325968503|ref|YP_004244695.1| - 3.5 7.3 9.6 4 7.1 9.6 1.0 1 0 0 1 1 1 0 Tetraspanin family ATPase PF06745.13 gi|325968504|ref|YP_004244696.1| - 3e-16 59.5 0.0 4.7e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|325968504|ref|YP_004244696.1| - 0.00035 19.3 0.1 0.00075 18.2 0.0 1.5 1 1 0 2 2 2 1 GvpD gas vesicle protein PAXNEB PF05625.11 gi|325968504|ref|YP_004244696.1| - 0.0026 17.0 0.0 0.18 10.9 0.0 2.1 2 0 0 2 2 2 1 PAXNEB protein DUF835 PF05763.12 gi|325968504|ref|YP_004244696.1| - 0.022 14.5 0.4 2.2 8.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF835) AAA_14 PF13173.6 gi|325968504|ref|YP_004244696.1| - 0.024 14.7 0.0 0.044 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain CSTF2_hinge PF14327.6 gi|325968504|ref|YP_004244696.1| - 0.035 14.6 0.3 0.34 11.4 0.0 2.5 2 0 0 2 2 2 0 Hinge domain of cleavage stimulation factor subunit 2 AAA PF00004.29 gi|325968504|ref|YP_004244696.1| - 0.064 13.7 0.1 0.27 11.6 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) GPHR_N PF12537.8 gi|325968504|ref|YP_004244696.1| - 0.067 13.3 0.1 6.3 7.0 0.0 2.3 2 0 0 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal ATP-cone PF03477.16 gi|325968504|ref|YP_004244696.1| - 0.075 13.6 0.1 9.6 6.9 0.0 3.0 3 0 0 3 3 3 0 ATP cone domain Elong_Iki1 PF10483.9 gi|325968504|ref|YP_004244696.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Elongator subunit Iki1 DUF4271 PF14093.6 gi|325968507|ref|YP_004244699.1| - 0.0096 15.9 2.6 0.0099 15.8 2.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) cEGF PF12662.7 gi|325968508|ref|YP_004244700.1| - 0.059 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Complement Clr-like EGF-like LAGLIDADG_WhiA PF14527.6 gi|325968508|ref|YP_004244700.1| - 0.11 12.6 2.1 15 5.8 0.1 3.2 3 0 0 3 3 3 0 WhiA LAGLIDADG-like domain WEMBL PF05701.11 gi|325968509|ref|YP_004244701.1| - 0.077 11.7 0.3 0.097 11.4 0.3 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light ResIII PF04851.15 gi|325968510|ref|YP_004244702.1| - 7.7e-05 22.8 0.0 0.065 13.2 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|325968510|ref|YP_004244702.1| - 0.00019 21.3 0.1 0.49 10.1 0.0 3.2 3 0 0 3 3 3 2 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|325968510|ref|YP_004244702.1| - 0.03 14.6 0.0 5.1 7.4 0.0 3.0 3 0 0 3 3 3 0 AAA domain DEAD_2 PF06733.15 gi|325968510|ref|YP_004244702.1| - 0.15 11.6 0.0 0.41 10.2 0.0 1.7 1 0 0 1 1 1 0 DEAD_2 FliL PF03748.14 gi|325968510|ref|YP_004244702.1| - 0.17 12.5 0.0 2.2 8.9 0.0 2.2 2 0 0 2 2 2 0 Flagellar basal body-associated protein FliL DUF2207 PF09972.9 gi|325968511|ref|YP_004244703.1| - 0.0012 17.7 0.0 0.0013 17.5 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) EzrA PF06160.12 gi|325968511|ref|YP_004244703.1| - 0.064 11.4 1.7 0.081 11.1 1.7 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4795 PF16043.5 gi|325968511|ref|YP_004244703.1| - 0.068 12.8 4.9 0.13 11.8 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) ARGLU PF15346.6 gi|325968511|ref|YP_004244703.1| - 0.13 12.2 7.1 0.22 11.4 7.0 1.5 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 Zw10 PF06248.13 gi|325968511|ref|YP_004244703.1| - 0.13 10.8 0.3 0.15 10.6 0.3 1.1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 Erythro-docking PF09277.11 gi|325968511|ref|YP_004244703.1| - 0.38 10.7 5.1 0.29 11.0 0.6 2.5 2 0 0 2 2 2 0 Erythronolide synthase, docking DUF1451 PF07295.11 gi|325968511|ref|YP_004244703.1| - 0.7 9.9 2.4 1.4 9.0 0.8 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain HSCB_C PF07743.13 gi|325968511|ref|YP_004244703.1| - 1 9.9 6.2 8.9 6.9 1.1 2.7 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain DUF3618 PF12277.8 gi|325968511|ref|YP_004244703.1| - 1.2 9.5 6.3 40 4.6 0.5 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3618) SpoOE-like PF09388.10 gi|325968511|ref|YP_004244703.1| - 1.5 8.8 5.7 1.8 8.5 0.2 3.5 4 0 0 4 4 4 0 Spo0E like sporulation regulatory protein DUF5345 PF17280.2 gi|325968511|ref|YP_004244703.1| - 3.8 7.6 9.3 10 6.2 3.1 2.7 2 1 0 2 2 2 0 Family of unknown function (DUF5345) DUF4349 PF14257.6 gi|325968511|ref|YP_004244703.1| - 5.7 6.3 12.4 2.6 7.4 1.5 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4349) Prominin PF05478.11 gi|325968511|ref|YP_004244703.1| - 5.8 4.7 5.3 1.6 6.6 0.1 1.9 1 1 1 2 2 2 0 Prominin TrwB_AAD_bind PF10412.9 gi|325968514|ref|YP_004244706.1| - 4.8e-06 25.7 0.0 5.4e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|325968514|ref|YP_004244706.1| - 7e-06 26.3 0.0 1.8e-05 25.0 0.0 1.6 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_16 PF13191.6 gi|325968514|ref|YP_004244706.1| - 0.00015 22.2 0.0 0.0004 20.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|325968514|ref|YP_004244706.1| - 0.00053 20.3 0.0 0.076 13.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|325968514|ref|YP_004244706.1| - 0.002 17.1 0.0 0.061 12.2 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain DUF853 PF05872.12 gi|325968514|ref|YP_004244706.1| - 0.012 14.3 0.2 0.94 8.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) AAA_7 PF12775.7 gi|325968514|ref|YP_004244706.1| - 0.018 14.6 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|325968514|ref|YP_004244706.1| - 0.031 14.7 0.2 0.54 10.7 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|325968514|ref|YP_004244706.1| - 0.063 13.4 0.0 0.25 11.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|325968514|ref|YP_004244706.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|325968514|ref|YP_004244706.1| - 0.19 11.7 0.0 0.37 10.8 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE cobW PF02492.19 gi|325968514|ref|YP_004244706.1| - 0.26 10.8 0.3 0.55 9.8 0.1 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RHH_1 PF01402.21 gi|325968515|ref|YP_004244707.1| - 0.048 13.6 1.1 2.7 8.0 0.1 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family CorA PF01544.18 gi|325968516|ref|YP_004244708.1| - 0.021 14.1 0.0 0.053 12.8 0.0 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein LexA_DNA_bind PF01726.16 gi|325968516|ref|YP_004244708.1| - 0.088 12.6 0.1 0.44 10.4 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain DUF3759 PF12585.8 gi|325968516|ref|YP_004244708.1| - 0.21 11.7 0.1 0.49 10.4 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3759) YqhG PF11079.8 gi|325968517|ref|YP_004244709.1| - 0.034 13.1 0.1 0.072 12.0 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein YqhG of unknown function DUF3870 PF12986.7 gi|325968517|ref|YP_004244709.1| - 0.055 13.7 0.1 0.24 11.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3870) DUF87 PF01935.17 gi|325968518|ref|YP_004244710.1| - 2.4e-13 50.7 0.0 4.5e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|325968518|ref|YP_004244710.1| - 4.6e-07 29.1 0.0 0.00018 20.6 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|325968518|ref|YP_004244710.1| - 1.8e-06 27.1 0.0 1.7e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|325968518|ref|YP_004244710.1| - 9.6e-06 25.1 0.0 1.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|325968518|ref|YP_004244710.1| - 1e-05 25.8 0.0 0.0067 16.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain DUF853 PF05872.12 gi|325968518|ref|YP_004244710.1| - 0.0007 18.3 0.0 0.06 11.9 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DEAD PF00270.29 gi|325968518|ref|YP_004244710.1| - 0.001 18.9 0.1 0.085 12.6 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|325968518|ref|YP_004244710.1| - 0.0037 17.3 0.0 0.008 16.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|325968518|ref|YP_004244710.1| - 0.021 14.3 0.0 0.038 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|325968518|ref|YP_004244710.1| - 0.065 13.6 0.0 0.18 12.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|325968518|ref|YP_004244710.1| - 0.066 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|325968518|ref|YP_004244710.1| - 0.085 12.6 0.0 0.67 9.7 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein T2SSE PF00437.20 gi|325968518|ref|YP_004244710.1| - 0.13 11.3 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|325968518|ref|YP_004244710.1| - 0.16 12.4 0.0 0.57 10.5 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain Slx4 PF09494.10 gi|325968519|ref|YP_004244711.1| - 0.016 15.2 0.0 0.37 10.8 0.0 2.3 2 0 0 2 2 2 0 Slx4 endonuclease CbiA PF01656.23 gi|325968522|ref|YP_004244714.1| - 4.1e-10 39.8 0.0 4.8e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|325968522|ref|YP_004244714.1| - 6.4e-08 32.7 0.1 1e-07 32.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|325968522|ref|YP_004244714.1| - 9.2e-06 25.3 0.0 2.1e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|325968522|ref|YP_004244714.1| - 0.00019 21.0 0.2 0.00033 20.2 0.2 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|325968522|ref|YP_004244714.1| - 0.0016 17.7 0.3 0.0034 16.6 0.3 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|325968522|ref|YP_004244714.1| - 0.039 13.2 0.1 0.11 11.7 0.1 1.6 2 0 0 2 2 2 0 ATPase MipZ AAA_25 PF13481.6 gi|325968522|ref|YP_004244714.1| - 0.09 12.3 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|325968522|ref|YP_004244714.1| - 0.14 12.6 0.1 0.39 11.1 0.1 1.8 1 0 0 1 1 1 0 RNA helicase Fer4_NifH PF00142.18 gi|325968522|ref|YP_004244714.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family T2SSE PF00437.20 gi|325968523|ref|YP_004244715.1| - 5.8e-22 78.0 0.0 9.4e-22 77.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|325968523|ref|YP_004244715.1| - 0.0025 18.3 0.0 0.0045 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|325968523|ref|YP_004244715.1| - 0.0026 17.5 0.0 0.0056 16.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|325968523|ref|YP_004244715.1| - 0.0041 16.6 0.0 0.0073 15.8 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|325968523|ref|YP_004244715.1| - 0.021 15.3 0.0 0.043 14.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|325968523|ref|YP_004244715.1| - 0.031 13.8 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|325968523|ref|YP_004244715.1| - 0.037 14.6 0.0 0.088 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|325968523|ref|YP_004244715.1| - 0.038 14.4 0.0 0.067 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|325968523|ref|YP_004244715.1| - 0.064 13.2 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|325968523|ref|YP_004244715.1| - 0.075 12.8 0.0 0.2 11.4 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|325968523|ref|YP_004244715.1| - 0.14 12.0 0.0 0.38 10.6 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|325968523|ref|YP_004244715.1| - 0.16 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SRPRB PF09439.10 gi|325968523|ref|YP_004244715.1| - 0.19 11.2 0.0 0.42 10.0 0.0 1.6 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RNA12 PF10443.9 gi|325968523|ref|YP_004244715.1| - 0.25 10.1 0.0 0.52 9.0 0.0 1.6 2 0 0 2 2 2 0 RNA12 protein DUF4006 PF13179.6 gi|325968527|ref|YP_004244719.1| - 0.095 12.6 0.4 0.16 11.9 0.4 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF4006) OppC_N PF12911.7 gi|325968529|ref|YP_004244721.1| - 1.2 9.2 6.9 0.18 11.8 1.1 2.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C P3A PF08727.11 gi|325968530|ref|YP_004244722.1| - 0.063 12.7 0.0 0.3 10.5 0.0 2.2 1 0 0 1 1 1 0 Poliovirus 3A protein like Rad51 PF08423.11 gi|325968532|ref|YP_004244724.1| - 3.8e-37 128.0 0.0 4.9e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|325968532|ref|YP_004244724.1| - 6.3e-19 68.2 0.0 8.9e-19 67.7 0.0 1.2 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|325968532|ref|YP_004244724.1| - 3.4e-09 36.6 0.0 4.7e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.15 gi|325968532|ref|YP_004244724.1| - 4.8e-05 22.8 0.0 7.1e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|325968532|ref|YP_004244724.1| - 0.00033 20.5 0.2 0.00073 19.3 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|325968532|ref|YP_004244724.1| - 0.00036 20.2 0.0 0.00067 19.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|325968532|ref|YP_004244724.1| - 0.0015 18.9 0.0 0.0036 17.7 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SAM_2 PF07647.17 gi|325968532|ref|YP_004244724.1| - 0.016 15.3 0.2 0.061 13.4 0.0 2.0 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) DUF787 PF05619.11 gi|325968532|ref|YP_004244724.1| - 0.062 12.4 0.1 0.091 11.9 0.1 1.1 1 0 0 1 1 1 0 Borrelia burgdorferi protein of unknown function (DUF787) PhoH PF02562.16 gi|325968532|ref|YP_004244724.1| - 0.07 12.6 0.1 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein RHH_1 PF01402.21 gi|325968535|ref|YP_004244727.1| - 3.6e-08 33.1 0.8 1.3e-07 31.3 0.4 2.1 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|325968535|ref|YP_004244727.1| - 0.0004 20.2 0.1 0.00077 19.3 0.1 1.5 1 1 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 VAPB_antitox PF02697.14 gi|325968535|ref|YP_004244727.1| - 0.00098 19.8 0.3 0.0013 19.5 0.3 1.2 1 0 0 1 1 1 1 Putative antitoxin TetR_C_11 PF16859.5 gi|325968535|ref|YP_004244727.1| - 0.0019 18.5 0.1 0.0027 18.0 0.1 1.2 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain RHH_4 PF13467.6 gi|325968535|ref|YP_004244727.1| - 0.012 15.5 0.1 0.91 9.4 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix domain PSK_trans_fac PF07704.11 gi|325968535|ref|YP_004244727.1| - 0.023 15.4 0.1 0.055 14.2 0.1 1.7 1 1 0 1 1 1 0 Rv0623-like transcription factor Rep_fac_C PF08542.11 gi|325968535|ref|YP_004244727.1| - 0.04 14.3 0.2 1.7 9.1 0.1 2.1 1 1 1 2 2 2 0 Replication factor C C-terminal domain SWIM PF04434.17 gi|325968536|ref|YP_004244728.1| - 0.048 13.3 0.8 0.16 11.7 0.8 1.9 1 1 0 1 1 1 0 SWIM zinc finger DUF4427 PF14468.6 gi|325968536|ref|YP_004244728.1| - 0.13 12.3 0.0 2.7 8.1 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4427) Polbeta PF18765.1 gi|325968542|ref|YP_004244734.1| - 2e-10 40.6 0.0 3e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase AIM24 PF01987.17 gi|325968543|ref|YP_004244735.1| - 2.1e-48 164.8 0.0 2.3e-48 164.6 0.0 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Thermopsin PF05317.11 gi|325968544|ref|YP_004244736.1| - 1.8e-34 119.4 1.6 2.5e-32 112.4 1.6 2.1 1 1 0 1 1 1 1 Thermopsin ScsC_N PF18312.1 gi|325968545|ref|YP_004244737.1| - 0.0032 17.2 7.7 0.07 13.0 1.0 3.3 2 1 1 3 3 3 2 Copper resistance protein ScsC N-terminal domain Ehrlichia_rpt PF09528.10 gi|325968545|ref|YP_004244737.1| - 0.0043 16.5 1.2 0.92 9.0 0.0 2.8 3 1 0 3 3 3 2 Ehrlichia tandem repeat (Ehrlichia_rpt) XPC-binding PF09280.11 gi|325968545|ref|YP_004244737.1| - 0.08 12.7 0.2 0.08 12.7 0.2 1.6 2 0 0 2 2 2 0 XPC-binding domain TENA_THI-4 PF03070.16 gi|325968547|ref|YP_004244739.1| - 2e-25 89.9 0.0 2.5e-25 89.5 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family NTP_transf_5 PF14907.6 gi|325968548|ref|YP_004244740.1| - 4.5e-06 26.5 0.2 6.7e-06 25.9 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase PTRF_SDPR PF15237.6 gi|325968549|ref|YP_004244741.1| - 9.8e-05 22.1 7.5 0.024 14.2 2.8 2.2 1 1 1 2 2 2 2 PTRF/SDPR family Laminin_I PF06008.14 gi|325968549|ref|YP_004244741.1| - 0.00075 19.3 9.4 0.0011 18.8 9.4 1.2 1 0 0 1 1 1 1 Laminin Domain I APG6_N PF17675.1 gi|325968549|ref|YP_004244741.1| - 0.00082 19.9 14.7 0.04 14.5 15.5 2.1 1 1 1 2 2 2 1 Apg6 coiled-coil region ERM PF00769.19 gi|325968549|ref|YP_004244741.1| - 0.0012 18.7 6.1 0.0015 18.4 6.1 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family YabA PF06156.13 gi|325968549|ref|YP_004244741.1| - 0.0018 18.9 14.5 0.013 16.1 2.0 2.5 1 1 1 2 2 2 1 Initiation control protein YabA KASH_CCD PF14662.6 gi|325968549|ref|YP_004244741.1| - 0.0026 17.6 11.7 0.0039 17.0 11.7 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Herpes_U30 PF04523.13 gi|325968549|ref|YP_004244741.1| - 0.0035 15.3 0.3 0.0052 14.8 0.3 1.2 1 0 0 1 1 1 1 Herpes virus tegument protein U30 DUF1664 PF07889.12 gi|325968549|ref|YP_004244741.1| - 0.0066 16.5 6.9 0.085 12.9 2.9 3.1 2 1 2 4 4 4 2 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|325968549|ref|YP_004244741.1| - 0.008 15.1 11.2 0.011 14.6 11.2 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF948 PF06103.11 gi|325968549|ref|YP_004244741.1| - 0.0098 16.1 5.2 0.62 10.4 0.4 2.9 2 1 2 4 4 3 2 Bacterial protein of unknown function (DUF948) Sec34 PF04136.15 gi|325968549|ref|YP_004244741.1| - 0.012 15.6 3.9 0.22 11.4 0.3 2.3 1 1 1 2 2 2 0 Sec34-like family Mod_r PF07200.13 gi|325968549|ref|YP_004244741.1| - 0.015 15.4 8.8 0.055 13.6 8.3 2.1 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF3450 PF11932.8 gi|325968549|ref|YP_004244741.1| - 0.029 13.7 9.4 0.023 14.0 6.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Dor1 PF04124.12 gi|325968549|ref|YP_004244741.1| - 0.036 12.7 2.9 0.18 10.4 2.7 2.2 2 1 0 2 2 2 0 Dor1-like family COG6 PF06419.11 gi|325968549|ref|YP_004244741.1| - 0.039 12.2 6.0 0.021 13.1 1.9 1.9 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 TPR_MLP1_2 PF07926.12 gi|325968549|ref|YP_004244741.1| - 0.053 13.6 10.1 0.11 12.6 0.2 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein AAA_13 PF13166.6 gi|325968549|ref|YP_004244741.1| - 0.06 12.0 5.6 0.074 11.7 5.6 1.1 1 0 0 1 1 1 0 AAA domain BRE1 PF08647.11 gi|325968549|ref|YP_004244741.1| - 0.093 12.8 6.8 0.18 11.9 6.8 1.6 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase GlnE PF03710.15 gi|325968549|ref|YP_004244741.1| - 0.13 11.6 5.2 2.6 7.4 0.1 2.4 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase DUF4795 PF16043.5 gi|325968549|ref|YP_004244741.1| - 0.15 11.6 4.3 8.4 5.9 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4795) DUF1394 PF07159.12 gi|325968549|ref|YP_004244741.1| - 0.16 11.2 3.4 0.33 10.2 3.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1394) BAR_3 PF16746.5 gi|325968549|ref|YP_004244741.1| - 0.18 11.5 2.1 0.35 10.5 2.1 1.4 1 1 0 1 1 1 0 BAR domain of APPL family UPF0449 PF15136.6 gi|325968549|ref|YP_004244741.1| - 0.23 12.0 7.6 2.6 8.5 0.2 2.5 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 Exonuc_VII_L PF02601.15 gi|325968549|ref|YP_004244741.1| - 0.23 11.0 2.2 0.37 10.3 2.2 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF4735 PF15882.5 gi|325968549|ref|YP_004244741.1| - 0.24 10.8 4.8 1.9 7.8 1.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4735) NAPRTase_C PF17956.1 gi|325968549|ref|YP_004244741.1| - 0.25 11.8 1.2 18 5.8 0.1 2.8 1 1 2 3 3 3 0 Nicotinate phosphoribosyltransferase C-terminal domain DUF4709 PF15821.5 gi|325968549|ref|YP_004244741.1| - 0.26 11.6 6.2 1.2 9.4 1.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4709) LMBR1 PF04791.16 gi|325968549|ref|YP_004244741.1| - 0.28 10.1 4.3 0.43 9.4 4.3 1.3 1 0 0 1 1 1 0 LMBR1-like membrane protein Serine_rich PF08824.10 gi|325968549|ref|YP_004244741.1| - 0.29 11.1 7.1 1.8 8.5 0.2 2.6 2 1 0 2 2 2 0 Serine rich protein interaction domain FapA PF03961.13 gi|325968549|ref|YP_004244741.1| - 0.32 9.5 8.3 0.57 8.7 7.9 1.6 1 1 1 2 2 2 0 Flagellar Assembly Protein A Fungal_TACC PF12709.7 gi|325968549|ref|YP_004244741.1| - 0.33 11.4 7.8 0.71 10.3 0.6 2.8 1 1 2 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins Rootletin PF15035.6 gi|325968549|ref|YP_004244741.1| - 0.34 10.9 18.9 0.74 9.8 18.9 1.4 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion XRCC4 PF06632.12 gi|325968549|ref|YP_004244741.1| - 0.36 9.6 14.8 0.8 8.5 6.0 2.2 1 1 1 2 2 2 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 DinB PF05163.12 gi|325968549|ref|YP_004244741.1| - 0.38 10.7 6.3 0.37 10.7 0.3 2.2 1 1 1 2 2 2 0 DinB family DUF2312 PF10073.9 gi|325968549|ref|YP_004244741.1| - 0.38 10.4 8.8 1.7 8.4 1.8 3.7 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF16 PF01519.16 gi|325968549|ref|YP_004244741.1| - 0.39 11.2 10.0 54 4.3 9.5 3.0 2 1 0 2 2 1 0 Protein of unknown function DUF16 Cauli_AT PF03233.13 gi|325968549|ref|YP_004244741.1| - 0.43 10.5 3.4 8.2 6.3 3.2 2.4 2 1 0 2 2 1 0 Aphid transmission protein Allexi_40kDa PF05549.11 gi|325968549|ref|YP_004244741.1| - 0.48 9.9 3.7 1.6 8.1 0.2 2.2 1 1 1 2 2 2 0 Allexivirus 40kDa protein Snapin_Pallidin PF14712.6 gi|325968549|ref|YP_004244741.1| - 0.52 10.8 7.3 2.1 8.8 0.2 3.0 2 1 2 4 4 3 0 Snapin/Pallidin Atg14 PF10186.9 gi|325968549|ref|YP_004244741.1| - 0.54 9.3 5.8 0.74 8.8 5.8 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 COG2 PF06148.11 gi|325968549|ref|YP_004244741.1| - 0.58 10.2 8.1 9.2 6.4 1.0 3.1 2 1 1 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Prominin PF05478.11 gi|325968549|ref|YP_004244741.1| - 0.76 7.7 5.8 1.8 6.4 5.5 1.5 1 1 0 1 1 1 0 Prominin TMPIT PF07851.13 gi|325968549|ref|YP_004244741.1| - 0.93 8.7 6.8 0.58 9.4 0.5 1.8 1 1 1 2 2 2 0 TMPIT-like protein BLOC1_2 PF10046.9 gi|325968549|ref|YP_004244741.1| - 1 9.7 7.9 2 8.8 0.4 3.0 2 1 2 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LOH1CR12 PF10158.9 gi|325968549|ref|YP_004244741.1| - 1.1 9.2 4.4 6.4 6.8 0.9 2.6 1 1 1 2 2 2 0 Tumour suppressor protein FlgN PF05130.12 gi|325968549|ref|YP_004244741.1| - 1.2 9.6 10.9 2.4 8.7 10.9 1.6 1 0 0 1 1 1 0 FlgN protein Laminin_II PF06009.12 gi|325968549|ref|YP_004244741.1| - 1.6 8.8 8.5 1.9 8.5 0.5 2.3 1 1 2 3 3 3 0 Laminin Domain II DUF4446 PF14584.6 gi|325968549|ref|YP_004244741.1| - 2.6 8.0 7.3 14 5.6 1.1 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) DUF1640 PF07798.11 gi|325968549|ref|YP_004244741.1| - 2.9 7.9 11.1 4.5 7.3 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) Fib_alpha PF08702.10 gi|325968549|ref|YP_004244741.1| - 2.9 8.1 7.3 4.6 7.4 6.4 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family YbfN PF13982.6 gi|325968549|ref|YP_004244741.1| - 3.2 8.1 5.8 35 4.8 0.2 3.6 2 2 1 3 3 3 0 YbfN-like lipoprotein ZapB PF06005.12 gi|325968549|ref|YP_004244741.1| - 3.2 8.3 23.9 3.3 8.2 5.8 2.8 1 1 1 2 2 2 0 Cell division protein ZapB Phage_HK97_TLTM PF06120.11 gi|325968549|ref|YP_004244741.1| - 3.6 6.7 11.3 8.1 5.5 11.3 1.5 1 1 0 1 1 1 0 Tail length tape measure protein Flagellar_rod PF05149.12 gi|325968549|ref|YP_004244741.1| - 7.9 5.8 14.2 0.65 9.4 5.6 2.3 2 1 1 3 3 2 0 Paraflagellar rod protein zf-C4H2 PF10146.9 gi|325968549|ref|YP_004244741.1| - 8.7 6.6 11.1 20 5.4 11.2 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein DivIC PF04977.15 gi|325968549|ref|YP_004244741.1| - 8.7 6.2 13.6 3.8 7.3 2.1 2.7 1 1 1 2 2 2 0 Septum formation initiator IstB_IS21 PF01695.17 gi|325968550|ref|YP_004244742.1| - 0.001 18.8 0.0 0.0022 17.8 0.0 1.5 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA PF00004.29 gi|325968550|ref|YP_004244742.1| - 0.0019 18.7 0.0 0.0038 17.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CLP1_P PF16575.5 gi|325968550|ref|YP_004244742.1| - 0.0019 18.0 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC_tran PF00005.27 gi|325968550|ref|YP_004244742.1| - 0.0021 18.6 0.0 0.0031 18.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|325968550|ref|YP_004244742.1| - 0.0044 17.6 0.0 0.011 16.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|325968550|ref|YP_004244742.1| - 0.0054 17.1 0.0 0.0099 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|325968550|ref|YP_004244742.1| - 0.0062 16.5 0.0 0.013 15.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|325968550|ref|YP_004244742.1| - 0.0081 16.4 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|325968550|ref|YP_004244742.1| - 0.012 16.0 0.0 0.021 15.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|325968550|ref|YP_004244742.1| - 0.012 15.7 0.0 0.037 14.1 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_28 PF13521.6 gi|325968550|ref|YP_004244742.1| - 0.021 15.1 0.0 0.07 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|325968550|ref|YP_004244742.1| - 0.044 13.5 0.0 0.068 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|325968550|ref|YP_004244742.1| - 0.057 13.5 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Cytidylate_kin PF02224.18 gi|325968550|ref|YP_004244742.1| - 0.078 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase AAA_29 PF13555.6 gi|325968550|ref|YP_004244742.1| - 0.08 12.7 0.0 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|325968550|ref|YP_004244742.1| - 0.083 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|325968550|ref|YP_004244742.1| - 0.13 12.5 0.0 0.22 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|325968550|ref|YP_004244742.1| - 0.14 11.8 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Thymidylate_kin PF02223.17 gi|325968550|ref|YP_004244742.1| - 0.17 11.5 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase AAA_13 PF13166.6 gi|325968550|ref|YP_004244742.1| - 0.18 10.4 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|325968550|ref|YP_004244742.1| - 0.18 11.0 0.0 0.31 10.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin DUF58 PF01882.18 gi|325968551|ref|YP_004244743.1| - 4.3e-07 30.1 0.0 9.1e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|325968552|ref|YP_004244744.1| - 8.5e-33 113.0 0.0 1.7e-32 112.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|325968552|ref|YP_004244744.1| - 5.2e-16 58.9 0.0 1e-15 57.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|325968552|ref|YP_004244744.1| - 5.4e-16 58.2 0.1 9.9e-16 57.4 0.1 1.4 1 0 0 1 1 1 1 AAA lid domain AAA PF00004.29 gi|325968552|ref|YP_004244744.1| - 2.4e-08 34.5 0.0 4.4e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|325968552|ref|YP_004244744.1| - 5.7e-06 26.1 0.1 1.4e-05 24.9 0.1 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|325968552|ref|YP_004244744.1| - 1.4e-05 25.6 0.7 0.00031 21.2 0.2 2.2 1 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|325968552|ref|YP_004244744.1| - 0.00014 21.6 0.1 0.00043 20.1 0.1 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|325968552|ref|YP_004244744.1| - 0.00023 21.7 0.0 0.00044 20.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|325968552|ref|YP_004244744.1| - 0.00024 21.4 0.0 0.00055 20.3 0.0 1.7 1 0 0 1 1 1 1 RNA helicase MCM_lid PF17855.1 gi|325968552|ref|YP_004244744.1| - 0.00036 20.9 0.0 0.001 19.5 0.0 1.7 1 1 0 1 1 1 1 MCM AAA-lid domain AAA_23 PF13476.6 gi|325968552|ref|YP_004244744.1| - 0.00045 20.8 0.1 0.00064 20.3 0.1 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|325968552|ref|YP_004244744.1| - 0.00045 19.7 0.2 0.077 12.4 0.1 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|325968552|ref|YP_004244744.1| - 0.00047 19.5 0.2 0.014 14.6 0.1 2.1 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_2 PF07724.14 gi|325968552|ref|YP_004244744.1| - 0.00056 20.1 0.0 0.0008 19.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|325968552|ref|YP_004244744.1| - 0.00058 20.1 0.1 0.0012 19.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|325968552|ref|YP_004244744.1| - 0.00059 19.8 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|325968552|ref|YP_004244744.1| - 0.0021 18.0 0.4 0.0053 16.7 0.2 1.8 2 0 0 2 2 1 1 NTPase AAA_29 PF13555.6 gi|325968552|ref|YP_004244744.1| - 0.0025 17.5 0.1 0.0058 16.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_PrkA PF08298.11 gi|325968552|ref|YP_004244744.1| - 0.0025 16.8 0.2 0.2 10.5 0.0 2.1 2 0 0 2 2 2 1 PrkA AAA domain T2SSE PF00437.20 gi|325968552|ref|YP_004244744.1| - 0.0031 16.6 0.7 0.0072 15.4 0.2 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|325968552|ref|YP_004244744.1| - 0.0037 17.4 0.0 0.0055 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|325968552|ref|YP_004244744.1| - 0.0074 16.8 0.2 0.087 13.3 0.2 2.1 2 0 0 2 2 2 1 ABC transporter AAA_7 PF12775.7 gi|325968552|ref|YP_004244744.1| - 0.011 15.2 0.0 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|325968552|ref|YP_004244744.1| - 0.015 15.2 0.1 0.036 14.0 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_lid_8 PF17868.1 gi|325968552|ref|YP_004244744.1| - 0.028 14.3 0.0 0.057 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA lid domain Sigma54_activ_2 PF14532.6 gi|325968552|ref|YP_004244744.1| - 0.028 14.5 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_14 PF13173.6 gi|325968552|ref|YP_004244744.1| - 0.035 14.1 0.0 0.086 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|325968552|ref|YP_004244744.1| - 0.039 13.5 0.0 0.23 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|325968552|ref|YP_004244744.1| - 0.039 13.5 0.2 0.082 12.5 0.2 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|325968552|ref|YP_004244744.1| - 0.054 13.2 0.3 0.12 12.1 0.3 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|325968552|ref|YP_004244744.1| - 0.059 13.3 0.2 0.14 12.0 0.0 1.7 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea dNK PF01712.19 gi|325968552|ref|YP_004244744.1| - 0.06 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Deoxynucleoside kinase FtsK_SpoIIIE PF01580.18 gi|325968552|ref|YP_004244744.1| - 0.067 12.5 0.0 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family NB-ARC PF00931.22 gi|325968552|ref|YP_004244744.1| - 0.08 12.1 0.0 0.14 11.3 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain Polyoma_lg_T_C PF06431.11 gi|325968552|ref|YP_004244744.1| - 0.095 11.6 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Polyomavirus large T antigen C-terminus AAA_28 PF13521.6 gi|325968552|ref|YP_004244744.1| - 0.098 12.9 0.2 0.18 12.0 0.2 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|325968552|ref|YP_004244744.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin PF02224.18 gi|325968552|ref|YP_004244744.1| - 0.16 11.6 1.0 0.31 10.8 0.1 1.8 2 0 0 2 2 2 0 Cytidylate kinase CarboxypepD_reg PF13620.6 gi|325968554|ref|YP_004244746.1| - 0.00017 21.8 5.0 0.048 13.9 0.4 3.1 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain Big_7 PF17957.1 gi|325968554|ref|YP_004244746.1| - 0.0032 18.2 1.4 0.0032 18.2 1.4 3.6 4 0 0 4 4 4 1 Bacterial Ig domain Big_3_5 PF16640.5 gi|325968554|ref|YP_004244746.1| - 0.038 14.2 0.0 0.038 14.2 0.0 2.8 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) ETRAMP PF09716.10 gi|325968554|ref|YP_004244746.1| - 3.7 7.7 7.9 12 6.1 2.6 3.0 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) Big_1 PF02369.16 gi|325968554|ref|YP_004244746.1| - 6.5 6.8 6.3 1.5 8.9 0.1 3.0 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 1) DUF3792 PF12670.7 gi|325968555|ref|YP_004244747.1| - 0.019 15.1 8.8 0.022 14.9 8.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3792) TssN PF17555.2 gi|325968555|ref|YP_004244747.1| - 0.88 8.9 12.7 1 8.7 12.7 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN L6_membrane PF05805.12 gi|325968556|ref|YP_004244748.1| - 0.21 11.2 0.2 0.21 11.2 0.2 1.6 2 0 0 2 2 2 0 L6 membrane protein DUF1616 PF07760.11 gi|325968557|ref|YP_004244749.1| - 1.3e-19 70.7 13.4 1.7e-19 70.3 13.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Glycos_transf_2 PF00535.26 gi|325968558|ref|YP_004244750.1| - 9.8e-27 93.8 0.0 1.3e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968558|ref|YP_004244750.1| - 1.1e-11 45.1 0.0 1.4e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|325968558|ref|YP_004244750.1| - 0.04 14.4 0.0 0.084 13.4 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 NTP_transferase PF00483.23 gi|325968558|ref|YP_004244750.1| - 0.061 12.9 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase Endothelin PF00322.17 gi|325968559|ref|YP_004244751.1| - 0.038 13.6 0.2 0.066 12.8 0.2 1.4 1 0 0 1 1 1 0 Endothelin family Glyco_trans_1_4 PF13692.6 gi|325968560|ref|YP_004244752.1| - 1.5e-10 41.6 0.0 4.1e-09 37.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|325968560|ref|YP_004244752.1| - 1.2e-07 31.5 0.0 6.3e-07 29.1 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968560|ref|YP_004244752.1| - 5.5e-07 29.7 0.0 1.1e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 GFO_IDH_MocA PF01408.22 gi|325968561|ref|YP_004244753.1| - 5.8e-14 52.9 0.0 9e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|325968561|ref|YP_004244753.1| - 6.5e-05 22.9 0.0 0.00013 22.0 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|325968561|ref|YP_004244753.1| - 0.00022 21.8 0.3 0.00048 20.7 0.1 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|325968561|ref|YP_004244753.1| - 0.0056 16.3 1.9 0.011 15.3 0.8 2.0 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|325968561|ref|YP_004244753.1| - 0.0098 15.2 0.1 0.032 13.5 0.1 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|325968561|ref|YP_004244753.1| - 0.024 14.7 0.1 0.041 14.0 0.1 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|325968561|ref|YP_004244753.1| - 0.05 13.9 0.1 0.11 12.8 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain IlvN PF07991.12 gi|325968561|ref|YP_004244753.1| - 0.062 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Omega_Repress PF07764.11 gi|325968561|ref|YP_004244753.1| - 0.11 13.0 0.2 0.63 10.7 0.1 2.1 1 1 1 2 2 2 0 Omega Transcriptional Repressor 3HCDH_N PF02737.18 gi|325968561|ref|YP_004244753.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_1 PF00534.20 gi|325968563|ref|YP_004244755.1| - 3.5e-32 111.3 0.0 5e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968563|ref|YP_004244755.1| - 5.3e-27 94.9 1.1 2e-26 93.0 0.3 2.3 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|325968563|ref|YP_004244755.1| - 5.8e-25 88.3 0.0 9.8e-25 87.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|325968563|ref|YP_004244755.1| - 6.2e-17 62.5 0.1 2.8e-15 57.1 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|325968563|ref|YP_004244755.1| - 8.6e-10 38.9 0.0 1.8e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|325968563|ref|YP_004244755.1| - 2.2e-07 30.8 0.0 0.00029 20.6 0.0 2.6 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|325968563|ref|YP_004244755.1| - 0.00047 20.2 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|325968564|ref|YP_004244756.1| - 1.7e-21 76.9 3.3 2.6e-21 76.4 1.6 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|325968564|ref|YP_004244756.1| - 1.6e-17 64.4 0.6 2.9e-16 60.3 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|325968564|ref|YP_004244756.1| - 6e-17 61.7 0.0 9.4e-17 61.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968564|ref|YP_004244756.1| - 6.1e-14 52.6 0.1 1.3e-13 51.6 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|325968564|ref|YP_004244756.1| - 1.5e-06 28.3 0.0 2.9e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|325968564|ref|YP_004244756.1| - 0.0018 18.0 0.8 0.012 15.4 0.4 2.2 1 1 1 2 2 2 1 Starch synthase catalytic domain DLIC PF05783.11 gi|325968564|ref|YP_004244756.1| - 0.14 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Glyco_trans_1_2 PF13524.6 gi|325968564|ref|YP_004244756.1| - 0.16 12.4 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|325968565|ref|YP_004244757.1| - 8.1e-13 48.5 0.0 1.1e-12 48.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|325968565|ref|YP_004244757.1| - 0.00016 22.1 0.0 0.00032 21.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|325968565|ref|YP_004244757.1| - 0.0055 16.2 0.0 0.0082 15.7 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|325968565|ref|YP_004244757.1| - 0.15 11.9 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|325968568|ref|YP_004244760.1| - 3.1e-22 79.2 0.0 4.6e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968568|ref|YP_004244760.1| - 4.4e-11 43.1 0.0 5.8e-08 32.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|325968568|ref|YP_004244760.1| - 9.8e-07 28.9 0.3 1.8e-06 28.0 0.3 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|325968568|ref|YP_004244760.1| - 0.00016 21.3 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|325968568|ref|YP_004244760.1| - 0.012 16.2 0.0 0.03 14.8 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase family 2 DUF2012 PF09430.10 gi|325968568|ref|YP_004244760.1| - 0.021 14.9 0.1 0.04 14.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2012) Glyco_transf_49 PF13896.6 gi|325968568|ref|YP_004244760.1| - 0.085 12.2 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Glycosyl-transferase for dystroglycan Glycos_transf_2 PF00535.26 gi|325968569|ref|YP_004244761.1| - 9.7e-11 41.8 0.2 1.9e-10 40.8 0.1 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Phage_Gp111 PF07410.11 gi|325968569|ref|YP_004244761.1| - 0.041 14.4 0.0 0.09 13.3 0.0 1.5 1 0 0 1 1 1 0 Streptococcus thermophilus bacteriophage Gp111 protein Methyltransf_21 PF05050.12 gi|325968570|ref|YP_004244762.1| - 5.8e-06 26.4 0.0 1e-05 25.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|325968570|ref|YP_004244762.1| - 0.083 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Glycos_transf_2 PF00535.26 gi|325968571|ref|YP_004244763.1| - 6.1e-11 42.4 0.2 8.8e-11 41.9 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968571|ref|YP_004244763.1| - 0.00044 20.2 0.0 0.00064 19.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.20 gi|325968572|ref|YP_004244764.1| - 4.2e-14 52.5 0.0 4.5e-14 52.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968572|ref|YP_004244764.1| - 2.1e-13 50.9 0.0 2.2e-13 50.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325968572|ref|YP_004244764.1| - 0.00015 22.1 0.0 0.00018 21.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Nse4-Nse3_bdg PF15412.6 gi|325968572|ref|YP_004244764.1| - 0.13 12.4 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE Pilin_N PF07790.11 gi|325968574|ref|YP_004244766.1| - 1.2e-06 29.3 0.0 3.5e-06 27.8 0.0 1.8 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Polysacc_synt_3 PF13440.6 gi|325968575|ref|YP_004244767.1| - 5.1e-15 55.5 22.7 5.1e-15 55.5 22.7 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|325968575|ref|YP_004244767.1| - 3.5e-13 49.6 32.5 3.5e-13 49.6 32.5 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein YjcB PF15940.5 gi|325968575|ref|YP_004244767.1| - 2.6 8.3 7.8 0.85 9.8 3.5 2.4 2 0 0 2 2 2 0 Family of unknown function Glycos_transf_1 PF00534.20 gi|325968576|ref|YP_004244768.1| - 1.2e-22 80.3 0.0 1.6e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968576|ref|YP_004244768.1| - 1.2e-12 48.4 0.0 2e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968576|ref|YP_004244768.1| - 1.8e-09 37.9 0.0 3.4e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|325968576|ref|YP_004244768.1| - 4.3e-06 27.0 0.0 1.1e-05 25.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Zeta_toxin PF06414.12 gi|325968577|ref|YP_004244769.1| - 0.016 14.5 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|325968577|ref|YP_004244769.1| - 0.074 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|325968577|ref|YP_004244769.1| - 0.076 13.6 0.2 0.3 11.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|325968577|ref|YP_004244769.1| - 0.084 11.8 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain Thymidylate_kin PF02223.17 gi|325968577|ref|YP_004244769.1| - 0.11 12.1 0.0 0.88 9.2 0.0 2.2 1 1 0 1 1 1 0 Thymidylate kinase AAA_16 PF13191.6 gi|325968577|ref|YP_004244769.1| - 0.11 12.8 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|325968577|ref|YP_004244769.1| - 0.15 12.5 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Glyco_transf_4 PF13439.6 gi|325968578|ref|YP_004244770.1| - 8.3e-11 42.2 0.0 1.2e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 TMEM214 PF10151.9 gi|325968578|ref|YP_004244770.1| - 0.022 13.3 0.0 0.031 12.8 0.0 1.2 1 0 0 1 1 1 0 TMEM214, C-terminal, caspase 4 activator Glyco_trans_4_4 PF13579.6 gi|325968578|ref|YP_004244770.1| - 0.05 14.0 0.0 0.077 13.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DUF2482 PF10655.9 gi|325968578|ref|YP_004244770.1| - 0.072 13.6 0.1 2.4 8.7 0.0 2.9 3 0 0 3 3 3 0 Hypothetical protein of unknown function (DUF2482) Glycos_transf_1 PF00534.20 gi|325968579|ref|YP_004244771.1| - 9.3e-18 64.3 0.0 1.4e-17 63.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968579|ref|YP_004244771.1| - 2e-12 47.7 0.0 3.3e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycogen_syn PF05693.13 gi|325968579|ref|YP_004244771.1| - 0.00027 19.7 0.1 0.00044 18.9 0.1 1.3 1 0 0 1 1 1 1 Glycogen synthase Glyco_trans_1_4 PF13692.6 gi|325968580|ref|YP_004244772.1| - 6.4e-07 29.9 0.0 1.2e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 NB-LRR PF12061.8 gi|325968580|ref|YP_004244772.1| - 0.02 14.3 0.7 0.032 13.6 0.7 1.4 1 0 0 1 1 1 0 Late blight resistance protein R1 Glycos_transf_1 PF00534.20 gi|325968580|ref|YP_004244772.1| - 0.037 13.6 0.0 0.084 12.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Cys_Met_Meta_PP PF01053.20 gi|325968580|ref|YP_004244772.1| - 0.1 11.1 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Sulfatase PF00884.23 gi|325968581|ref|YP_004244773.1| - 7.6e-36 124.1 0.0 1.1e-35 123.5 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|325968581|ref|YP_004244773.1| - 4.1e-16 59.5 0.1 8.1e-15 55.3 0.1 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|325968581|ref|YP_004244773.1| - 0.00092 17.9 0.0 0.0016 17.2 0.0 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Rad50_zn_hook PF04423.14 gi|325968581|ref|YP_004244773.1| - 0.4 10.6 2.0 5.8 6.8 0.1 2.8 3 0 0 3 3 3 0 Rad50 zinc hook motif Glyco_tranf_2_3 PF13641.6 gi|325968582|ref|YP_004244774.1| - 7e-14 52.3 2.1 6.8e-12 45.8 2.1 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|325968582|ref|YP_004244774.1| - 1.4e-10 41.3 0.3 2.3e-10 40.5 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|325968582|ref|YP_004244774.1| - 9.9e-10 38.6 3.0 2.9e-09 37.1 3.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|325968582|ref|YP_004244774.1| - 1.6e-05 24.5 0.0 9.6e-05 21.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 21 Polysacc_deac_1 PF01522.21 gi|325968583|ref|YP_004244775.1| - 1.3e-15 57.4 0.0 1.8e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|325968583|ref|YP_004244775.1| - 0.0041 16.8 0.1 0.0069 16.1 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Glyco_hydro_57 PF03065.15 gi|325968583|ref|YP_004244775.1| - 0.087 12.0 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 Glycos_transf_2 PF00535.26 gi|325968584|ref|YP_004244776.1| - 7.1e-14 52.0 0.0 2.5e-13 50.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968584|ref|YP_004244776.1| - 4.3e-11 43.1 0.1 2.5e-10 40.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|325968584|ref|YP_004244776.1| - 0.00074 20.0 0.0 0.0013 19.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Asp_protease_2 PF13650.6 gi|325968585|ref|YP_004244777.1| - 0.0035 17.9 0.1 0.0044 17.6 0.1 1.1 1 0 0 1 1 1 1 Aspartyl protease PAPS_reduct PF01507.19 gi|325968586|ref|YP_004244778.1| - 3.3e-34 118.4 0.0 7.1e-34 117.3 0.0 1.5 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.20 gi|325968586|ref|YP_004244778.1| - 3.7e-06 26.8 0.0 5.7e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|325968586|ref|YP_004244778.1| - 0.0025 17.3 0.0 0.0036 16.8 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC Diphthami_syn_2 PF01902.17 gi|325968586|ref|YP_004244778.1| - 0.0061 16.1 0.1 0.016 14.7 0.1 1.6 1 1 0 1 1 1 1 Diphthamide synthase NAD_synthase PF02540.17 gi|325968586|ref|YP_004244778.1| - 0.0062 15.7 0.0 0.012 14.8 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|325968586|ref|YP_004244778.1| - 0.0066 16.1 0.0 0.0092 15.7 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase NIR_SIR PF01077.22 gi|325968586|ref|YP_004244778.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain Sulfatase PF00884.23 gi|325968587|ref|YP_004244779.1| - 2.1e-13 50.3 0.0 5.4e-12 45.7 0.0 2.4 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|325968587|ref|YP_004244779.1| - 1.3e-06 28.3 0.3 3.4e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PaREP1 PF05942.11 gi|325968588|ref|YP_004244780.1| - 6.6e-32 109.8 0.2 9.6e-32 109.3 0.2 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF3701 PF12482.8 gi|325968588|ref|YP_004244780.1| - 0.0025 17.9 0.9 0.98 9.5 0.1 2.6 3 0 0 3 3 3 2 Phage integrase protein Methyltransf_21 PF05050.12 gi|325968590|ref|YP_004244782.1| - 3.5e-09 36.9 0.0 4.4e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|325968590|ref|YP_004244782.1| - 0.0047 16.7 0.3 0.022 14.5 0.1 1.9 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_22 PF13383.6 gi|325968590|ref|YP_004244782.1| - 0.031 13.8 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.26 gi|325968592|ref|YP_004244784.1| - 2.4e-20 73.0 0.0 4.1e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968592|ref|YP_004244784.1| - 5.2e-10 39.6 0.0 8.6e-10 38.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|325968592|ref|YP_004244784.1| - 0.048 13.6 0.0 7.2 6.5 0.0 2.3 2 0 0 2 2 2 0 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|325968592|ref|YP_004244784.1| - 0.053 13.0 0.0 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|325968592|ref|YP_004244784.1| - 0.066 13.7 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glycos_transf_1 PF00534.20 gi|325968593|ref|YP_004244785.1| - 3.1e-15 56.1 0.0 4.2e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968593|ref|YP_004244785.1| - 9.2e-07 29.4 0.0 1.6e-06 28.6 0.0 1.3 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|325968593|ref|YP_004244785.1| - 0.11 11.2 0.0 0.48 9.0 0.0 1.7 1 1 1 2 2 2 0 Glycosyltransferase family 20 Glycos_transf_2 PF00535.26 gi|325968595|ref|YP_004244787.1| - 3.4e-09 36.7 0.0 4.1e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.6 gi|325968595|ref|YP_004244787.1| - 0.00016 22.1 0.1 0.00037 21.0 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glycos_transf_2 PF00535.26 gi|325968596|ref|YP_004244788.1| - 5.5e-19 68.6 0.0 7.7e-19 68.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968596|ref|YP_004244788.1| - 2.6e-14 53.7 0.0 6.4e-14 52.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|325968596|ref|YP_004244788.1| - 0.0006 19.4 0.0 0.0021 17.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|325968596|ref|YP_004244788.1| - 0.00078 19.4 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|325968596|ref|YP_004244788.1| - 0.00089 19.0 0.0 0.045 13.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.6 gi|325968596|ref|YP_004244788.1| - 0.044 14.3 0.0 0.12 12.9 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|325968596|ref|YP_004244788.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 NPHI_C PF08469.10 gi|325968596|ref|YP_004244788.1| - 0.16 12.0 0.1 16 5.4 0.0 2.5 3 0 0 3 3 3 0 Nucleoside triphosphatase I C-terminal AAA_18 PF13238.6 gi|325968597|ref|YP_004244789.1| - 5e-06 27.1 0.0 0.00018 22.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|325968597|ref|YP_004244789.1| - 8.9e-06 25.9 0.1 0.00057 20.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|325968597|ref|YP_004244789.1| - 0.00016 22.0 0.0 0.00041 20.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain MobB PF03205.14 gi|325968597|ref|YP_004244789.1| - 0.00016 21.5 0.0 0.00027 20.9 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_7 PF12775.7 gi|325968597|ref|YP_004244789.1| - 0.00018 21.1 0.0 0.03 13.8 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA PF00004.29 gi|325968597|ref|YP_004244789.1| - 0.00045 20.7 0.0 0.0013 19.2 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|325968597|ref|YP_004244789.1| - 0.0013 18.7 0.1 0.005 16.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|325968597|ref|YP_004244789.1| - 0.0018 18.2 0.1 0.0099 15.8 0.0 1.9 2 0 0 2 2 2 1 NTPase CLP1_P PF16575.5 gi|325968597|ref|YP_004244789.1| - 0.0019 18.0 0.0 0.0037 17.1 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|325968597|ref|YP_004244789.1| - 0.0023 17.6 0.0 0.0041 16.8 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|325968597|ref|YP_004244789.1| - 0.0024 17.8 0.0 0.0045 16.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_28 PF13521.6 gi|325968597|ref|YP_004244789.1| - 0.0027 18.0 0.0 0.0052 17.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325968597|ref|YP_004244789.1| - 0.0029 18.0 0.0 0.0049 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|325968597|ref|YP_004244789.1| - 0.0034 17.9 0.1 0.0057 17.2 0.1 1.3 1 0 0 1 1 1 1 ABC transporter Thymidylate_kin PF02223.17 gi|325968597|ref|YP_004244789.1| - 0.0062 16.2 0.1 0.015 15.0 0.0 1.7 2 0 0 2 2 1 1 Thymidylate kinase AAA_24 PF13479.6 gi|325968597|ref|YP_004244789.1| - 0.0098 15.6 0.0 0.038 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|325968597|ref|YP_004244789.1| - 0.012 15.5 0.1 0.066 13.1 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_21 PF13304.6 gi|325968597|ref|YP_004244789.1| - 0.017 15.0 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system ATPase_2 PF01637.18 gi|325968597|ref|YP_004244789.1| - 0.02 14.8 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|325968597|ref|YP_004244789.1| - 0.028 14.8 0.0 0.057 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase TsaE PF02367.17 gi|325968597|ref|YP_004244789.1| - 0.03 14.3 0.2 0.082 12.9 0.1 1.8 1 1 1 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|325968597|ref|YP_004244789.1| - 0.052 13.3 0.0 0.082 12.7 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TrwB_AAD_bind PF10412.9 gi|325968597|ref|YP_004244789.1| - 0.054 12.4 0.0 0.075 11.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|325968597|ref|YP_004244789.1| - 0.054 13.2 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|325968597|ref|YP_004244789.1| - 0.062 13.3 0.1 0.11 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|325968597|ref|YP_004244789.1| - 0.064 12.3 0.1 0.1 11.6 0.1 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase Zeta_toxin PF06414.12 gi|325968597|ref|YP_004244789.1| - 0.067 12.5 0.1 0.14 11.4 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin PduV-EutP PF10662.9 gi|325968597|ref|YP_004244789.1| - 0.078 12.7 0.1 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.6 gi|325968597|ref|YP_004244789.1| - 0.081 13.4 0.2 0.24 11.8 0.1 1.8 2 1 1 3 3 1 0 AAA domain RuvB_N PF05496.12 gi|325968597|ref|YP_004244789.1| - 0.086 12.6 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|325968597|ref|YP_004244789.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Roc PF08477.13 gi|325968597|ref|YP_004244789.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Cytidylate_kin PF02224.18 gi|325968597|ref|YP_004244789.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Cytidylate kinase dNK PF01712.19 gi|325968597|ref|YP_004244789.1| - 0.15 11.9 0.1 0.53 10.1 0.0 1.8 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_15 PF13175.6 gi|325968597|ref|YP_004244789.1| - 0.18 11.5 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|325968597|ref|YP_004244789.1| - 0.2 11.0 0.1 0.3 10.5 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|325968597|ref|YP_004244789.1| - 0.2 11.4 0.1 0.4 10.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.19 gi|325968597|ref|YP_004244789.1| - 0.21 11.1 0.0 0.31 10.6 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Glyco_transf_4 PF13439.6 gi|325968598|ref|YP_004244790.1| - 5.8e-05 23.2 0.4 0.00011 22.3 0.2 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|325968598|ref|YP_004244790.1| - 8e-05 23.1 0.3 0.00012 22.6 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DBD_HTH PF18430.1 gi|325968598|ref|YP_004244790.1| - 0.082 12.7 0.4 3 7.7 0.2 2.9 3 0 0 3 3 3 0 Putative DNA-binding domain Glycos_transf_1 PF00534.20 gi|325968599|ref|YP_004244791.1| - 3.1e-17 62.7 0.0 5e-16 58.7 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968599|ref|YP_004244791.1| - 3.5e-14 53.4 0.0 6.7e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968599|ref|YP_004244791.1| - 1.3e-09 38.3 2.2 3.1e-09 37.1 2.2 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|325968599|ref|YP_004244791.1| - 3.5e-06 27.6 3.4 6.5e-06 26.7 3.4 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|325968599|ref|YP_004244791.1| - 0.0096 16.3 0.0 0.019 15.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|325968600|ref|YP_004244792.1| - 2.9e-09 37.0 0.0 5.7e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF61 PF01886.16 gi|325968600|ref|YP_004244792.1| - 0.0032 17.5 0.1 0.0064 16.5 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF61 CAP59_mtransfer PF11735.8 gi|325968600|ref|YP_004244792.1| - 0.065 12.9 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 Methyltransf_21 PF05050.12 gi|325968601|ref|YP_004244793.1| - 1.4e-19 70.8 0.0 2e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|325968601|ref|YP_004244793.1| - 6.4e-07 29.3 1.1 1.5e-06 28.1 1.1 1.7 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|325968601|ref|YP_004244793.1| - 4.7e-05 22.9 0.1 9.8e-05 21.9 0.1 1.5 2 0 0 2 2 2 1 Putative methyltransferase V_cholerae_RfbT PF05575.11 gi|325968601|ref|YP_004244793.1| - 6.7e-05 22.3 1.2 0.00011 21.6 1.2 1.3 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_12 PF08242.12 gi|325968601|ref|YP_004244793.1| - 0.0055 17.4 0.0 0.0081 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968601|ref|YP_004244793.1| - 0.011 16.4 0.0 0.057 14.1 0.0 1.9 1 1 1 2 2 2 0 Methyltransferase domain MTS PF05175.14 gi|325968601|ref|YP_004244793.1| - 0.019 14.5 0.0 0.029 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF4845 PF16137.5 gi|325968601|ref|YP_004244793.1| - 0.13 13.1 0.2 0.27 12.1 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4845) LpxC PF03331.13 gi|325968601|ref|YP_004244793.1| - 0.15 11.5 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 UDP-3-O-acyl N-acetylglycosamine deacetylase Glyco_trans_1_4 PF13692.6 gi|325968602|ref|YP_004244794.1| - 0.0002 21.8 0.0 0.00038 20.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|325968602|ref|YP_004244794.1| - 0.043 13.3 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 TMEM71 PF15121.6 gi|325968602|ref|YP_004244794.1| - 0.062 13.0 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 TMEM71 protein family Polysacc_deac_1 PF01522.21 gi|325968603|ref|YP_004244795.1| - 1.3e-23 83.2 0.0 1.8e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2194 PF09960.9 gi|325968603|ref|YP_004244795.1| - 0.0069 14.8 0.1 0.0096 14.3 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein conserved in bacteria (DUF2194) LCIB_C_CA PF18599.1 gi|325968603|ref|YP_004244795.1| - 0.035 13.4 0.0 0.054 12.8 0.0 1.2 1 0 0 1 1 1 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases DUF2334 PF10096.9 gi|325968603|ref|YP_004244795.1| - 0.099 12.3 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Glyco_trans_1_4 PF13692.6 gi|325968604|ref|YP_004244796.1| - 2.5e-13 50.6 0.0 4.3e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|325968604|ref|YP_004244796.1| - 3.1e-12 46.4 0.0 4.6e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325968604|ref|YP_004244796.1| - 4.4e-05 23.8 0.0 0.00012 22.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968604|ref|YP_004244796.1| - 7.2e-05 22.9 0.3 0.00013 22.1 0.3 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|325968605|ref|YP_004244797.1| - 2.6e-20 72.7 0.0 3.8e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968605|ref|YP_004244797.1| - 3.4e-16 59.9 0.0 6.5e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325968605|ref|YP_004244797.1| - 2.9e-06 27.6 0.0 5.1e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968605|ref|YP_004244797.1| - 0.00028 20.9 0.1 0.0014 18.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 EpsG PF14897.6 gi|325968606|ref|YP_004244798.1| - 7.8e-05 22.1 31.3 7.8e-05 22.1 31.3 2.2 2 0 0 2 2 2 2 EpsG family DUF515 PF04415.12 gi|325968606|ref|YP_004244798.1| - 0.4 9.0 1.7 0.56 8.5 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF515) Epimerase PF01370.21 gi|325968607|ref|YP_004244799.1| - 2.1e-59 200.9 0.2 3.2e-59 200.3 0.0 1.3 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|325968607|ref|YP_004244799.1| - 7.7e-55 186.6 0.0 1e-54 186.2 0.0 1.2 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|325968607|ref|YP_004244799.1| - 3.3e-27 95.2 0.0 4.1e-27 94.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|325968607|ref|YP_004244799.1| - 1.5e-23 83.4 0.0 8.3e-23 80.9 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|325968607|ref|YP_004244799.1| - 1.6e-18 66.8 0.0 2e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|325968607|ref|YP_004244799.1| - 5.9e-14 52.4 0.0 1e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|325968607|ref|YP_004244799.1| - 1.9e-12 46.9 0.5 3.2e-10 39.6 0.5 2.7 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.25 gi|325968607|ref|YP_004244799.1| - 8.1e-10 38.5 0.5 2.2e-08 33.8 0.5 2.5 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|325968607|ref|YP_004244799.1| - 7.9e-09 35.4 0.0 1.7e-08 34.4 0.0 1.7 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|325968607|ref|YP_004244799.1| - 3.1e-06 27.2 0.1 9.1e-06 25.7 0.1 1.8 1 1 0 1 1 1 1 KR domain NAD_binding_2 PF03446.15 gi|325968607|ref|YP_004244799.1| - 0.0086 16.3 0.0 0.025 14.8 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase PHB_acc_N PF07879.11 gi|325968607|ref|YP_004244799.1| - 0.043 13.9 0.0 6.6 6.9 0.0 2.6 2 1 1 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain TrkA_N PF02254.18 gi|325968607|ref|YP_004244799.1| - 0.064 13.5 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain adh_short_C2 PF13561.6 gi|325968607|ref|YP_004244799.1| - 0.066 12.8 0.1 0.72 9.4 0.1 2.2 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Glycos_transf_1 PF00534.20 gi|325968608|ref|YP_004244800.1| - 5.1e-31 107.5 0.0 1.4e-30 106.1 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968608|ref|YP_004244800.1| - 6.8e-26 91.3 0.5 2e-25 89.8 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968608|ref|YP_004244800.1| - 4.7e-15 56.0 0.8 4.7e-15 56.0 0.8 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|325968608|ref|YP_004244800.1| - 4.8e-14 53.1 0.2 8.5e-14 52.3 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|325968608|ref|YP_004244800.1| - 3e-07 30.4 0.1 2.9e-06 27.2 0.2 2.0 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|325968608|ref|YP_004244800.1| - 0.0029 17.7 0.5 0.0058 16.7 0.5 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like PIGA PF08288.12 gi|325968608|ref|YP_004244800.1| - 0.0032 18.0 0.1 0.012 16.2 0.1 2.0 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) DUF4257 PF14074.6 gi|325968608|ref|YP_004244800.1| - 0.051 13.8 0.1 8.9 6.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4257) Glyco_trans_1_2 PF13524.6 gi|325968608|ref|YP_004244800.1| - 0.17 12.3 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|325968609|ref|YP_004244801.1| - 6.4e-16 58.6 0.1 8.9e-16 58.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968609|ref|YP_004244801.1| - 3.9e-12 46.5 0.0 5.5e-11 42.8 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|325968609|ref|YP_004244801.1| - 0.0022 17.5 0.1 0.0031 17.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|325968609|ref|YP_004244801.1| - 0.0051 17.3 0.1 0.011 16.2 0.1 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|325968609|ref|YP_004244801.1| - 0.024 14.6 0.1 0.082 12.8 0.1 1.8 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|325968609|ref|YP_004244801.1| - 0.035 13.6 0.0 0.14 11.6 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|325968610|ref|YP_004244802.1| - 7e-26 90.8 0.1 8.6e-26 90.5 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968610|ref|YP_004244802.1| - 4.3e-15 56.3 0.0 5.6e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325968610|ref|YP_004244802.1| - 0.00015 22.1 0.0 0.00024 21.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Tox-URI2 PF15653.6 gi|325968610|ref|YP_004244802.1| - 0.024 14.9 0.8 0.091 13.0 0.1 2.1 2 0 0 2 2 2 0 URI fold toxin 2 Glyco_transf_4 PF13439.6 gi|325968611|ref|YP_004244803.1| - 2.9e-21 76.2 2.2 4.5e-21 75.6 2.2 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|325968611|ref|YP_004244803.1| - 7.6e-21 74.4 0.0 1.1e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968611|ref|YP_004244803.1| - 1.9e-16 60.7 0.0 3.7e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|325968611|ref|YP_004244803.1| - 1.3e-13 51.7 0.0 2.3e-13 50.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|325968611|ref|YP_004244803.1| - 2.7e-05 24.2 0.3 0.00016 21.7 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|325968611|ref|YP_004244803.1| - 0.0021 17.8 2.9 0.022 14.5 2.8 2.1 1 1 1 2 2 2 1 Starch synthase catalytic domain Glyco_trans_1_2 PF13524.6 gi|325968611|ref|YP_004244803.1| - 0.0057 17.0 0.0 0.0099 16.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 ATPase_2 PF01637.18 gi|325968613|ref|YP_004244805.1| - 1.1e-53 182.6 0.0 1.5e-53 182.1 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|325968613|ref|YP_004244805.1| - 0.005 17.1 0.0 0.0091 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|325968613|ref|YP_004244805.1| - 0.024 15.1 0.0 0.11 12.9 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|325968613|ref|YP_004244805.1| - 0.041 14.1 0.0 0.13 12.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|325968613|ref|YP_004244805.1| - 0.15 12.5 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain PGK PF00162.19 gi|325968614|ref|YP_004244806.1| - 0.013 14.4 0.0 0.016 14.2 0.0 1.1 1 0 0 1 1 1 0 Phosphoglycerate kinase DUF2070 PF09843.9 gi|325968615|ref|YP_004244807.1| - 6.4 4.9 9.7 7.6 4.7 9.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Polysacc_synt PF01943.17 gi|325968617|ref|YP_004244809.1| - 3.1e-08 33.3 32.2 3.1e-08 33.3 32.2 2.6 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein DUF1616 PF07760.11 gi|325968619|ref|YP_004244811.1| - 4.1e-14 52.6 0.2 1.2e-13 51.2 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) ECD PF18432.1 gi|325968619|ref|YP_004244811.1| - 0.078 12.9 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 Extracellular Cadherin domain LRR19-TM PF15176.6 gi|325968619|ref|YP_004244811.1| - 0.14 12.1 1.4 2.7 8.0 0.4 2.4 2 0 0 2 2 2 0 Leucine-rich repeat family 19 TM domain DUF4577 PF15145.6 gi|325968619|ref|YP_004244811.1| - 0.6 10.2 2.9 5.3 7.1 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4577) TraD_N PF12615.8 gi|325968619|ref|YP_004244811.1| - 7 7.5 11.2 0.75 10.6 5.8 2.1 2 0 0 2 2 2 0 F sex factor protein N terminal DUF1616 PF07760.11 gi|325968620|ref|YP_004244812.1| - 4.5e-33 114.9 10.7 6.6e-33 114.3 10.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) PIG-U PF06728.13 gi|325968622|ref|YP_004244814.1| - 0.71 8.9 9.5 0.82 8.7 9.5 1.1 1 0 0 1 1 1 0 GPI transamidase subunit PIG-U DUF5527 PF17665.1 gi|325968622|ref|YP_004244814.1| - 0.79 9.3 2.7 1.2 8.7 2.7 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5527) CarboxypepD_reg PF13620.6 gi|325968623|ref|YP_004244815.1| - 2.3e-06 27.8 2.1 1.1e-05 25.6 0.2 2.7 2 1 1 3 3 3 1 Carboxypeptidase regulatory-like domain Big_3_5 PF16640.5 gi|325968623|ref|YP_004244815.1| - 3.4e-05 23.9 1.3 3.4e-05 23.9 1.3 3.7 3 1 1 4 4 4 1 Bacterial Ig-like domain (group 3) Big_6 PF17936.1 gi|325968623|ref|YP_004244815.1| - 0.012 15.9 0.1 0.035 14.4 0.1 1.8 1 0 0 1 1 1 0 Bacterial Ig domain DUF4129 PF13559.6 gi|325968623|ref|YP_004244815.1| - 0.03 14.6 0.0 0.056 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) CarbopepD_reg_2 PF13715.6 gi|325968623|ref|YP_004244815.1| - 0.06 13.4 0.2 0.19 11.7 0.2 1.9 1 0 0 1 1 1 0 CarboxypepD_reg-like domain DUF824 PF05688.11 gi|325968623|ref|YP_004244815.1| - 0.12 12.2 3.9 2.4 8.1 0.1 3.5 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) bMG3 PF11974.8 gi|325968623|ref|YP_004244815.1| - 0.14 12.2 0.0 0.35 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial alpha-2-macroglobulin MG3 domain Dioxygenase_C PF00775.21 gi|325968623|ref|YP_004244815.1| - 0.14 11.6 0.0 0.29 10.5 0.0 1.5 1 0 0 1 1 1 0 Dioxygenase Big_1 PF02369.16 gi|325968623|ref|YP_004244815.1| - 6.9 6.8 10.3 0.24 11.4 0.5 3.1 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) DUF4350 PF14258.6 gi|325968624|ref|YP_004244816.1| - 0.018 15.4 0.0 0.059 13.8 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4350) HTH_46 PF15977.5 gi|325968624|ref|YP_004244816.1| - 0.02 14.9 0.1 0.047 13.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding AAA_3 PF07726.11 gi|325968625|ref|YP_004244817.1| - 9.8e-38 129.0 0.1 1.5e-37 128.4 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|325968625|ref|YP_004244817.1| - 4.1e-15 55.4 0.0 6.9e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|325968625|ref|YP_004244817.1| - 4.2e-15 55.9 0.1 1.7e-14 54.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|325968625|ref|YP_004244817.1| - 1.4e-05 24.6 0.5 0.0048 16.3 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|325968625|ref|YP_004244817.1| - 4.5e-05 23.9 1.0 0.00017 22.0 0.1 2.4 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|325968625|ref|YP_004244817.1| - 6.1e-05 22.8 0.2 0.00028 20.7 0.2 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|325968625|ref|YP_004244817.1| - 0.00045 20.5 0.0 0.0012 19.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|325968625|ref|YP_004244817.1| - 0.00047 20.7 0.1 0.0008 20.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|325968625|ref|YP_004244817.1| - 0.00087 19.0 0.2 1.7 8.4 0.1 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_25 PF13481.6 gi|325968625|ref|YP_004244817.1| - 0.00096 18.8 0.2 0.45 10.1 0.1 2.3 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|325968625|ref|YP_004244817.1| - 0.0047 17.3 0.0 0.015 15.7 0.0 1.9 2 0 0 2 2 2 1 RNA helicase AAA_16 PF13191.6 gi|325968625|ref|YP_004244817.1| - 0.0049 17.3 0.7 0.064 13.6 0.4 2.2 1 1 1 2 2 2 1 AAA ATPase domain MCM PF00493.23 gi|325968625|ref|YP_004244817.1| - 0.0052 15.9 0.1 0.027 13.5 0.1 2.0 1 1 0 1 1 1 1 MCM P-loop domain Pes-10 PF07149.11 gi|325968625|ref|YP_004244817.1| - 0.0053 15.9 0.1 0.0072 15.4 0.1 1.1 1 0 0 1 1 1 1 Pes-10 AAA_PrkA PF08298.11 gi|325968625|ref|YP_004244817.1| - 0.0071 15.3 0.2 0.91 8.4 0.0 2.1 2 0 0 2 2 2 1 PrkA AAA domain AAA_29 PF13555.6 gi|325968625|ref|YP_004244817.1| - 0.0086 15.8 0.1 0.019 14.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain TsaE PF02367.17 gi|325968625|ref|YP_004244817.1| - 0.016 15.2 0.3 0.028 14.4 0.3 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|325968625|ref|YP_004244817.1| - 0.017 15.6 0.4 0.056 14.0 0.2 1.9 2 0 0 2 2 2 0 ABC transporter AAA_2 PF07724.14 gi|325968625|ref|YP_004244817.1| - 0.036 14.2 0.0 0.26 11.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) MCM_lid PF17855.1 gi|325968625|ref|YP_004244817.1| - 0.047 14.1 0.0 0.14 12.6 0.0 1.7 1 1 0 1 1 1 0 MCM AAA-lid domain AAA_7 PF12775.7 gi|325968625|ref|YP_004244817.1| - 0.048 13.2 0.3 0.1 12.1 0.1 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region AAA_lid_8 PF17868.1 gi|325968625|ref|YP_004244817.1| - 0.049 13.5 0.2 0.11 12.5 0.2 1.6 1 0 0 1 1 1 0 AAA lid domain AAA_18 PF13238.6 gi|325968625|ref|YP_004244817.1| - 0.05 14.2 0.0 0.18 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_8 PF12780.7 gi|325968625|ref|YP_004244817.1| - 0.054 12.8 0.4 0.1 11.9 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region D4 FtsK_SpoIIIE PF01580.18 gi|325968625|ref|YP_004244817.1| - 0.059 12.7 0.1 1.6 8.0 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.18 gi|325968625|ref|YP_004244817.1| - 0.059 13.1 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|325968625|ref|YP_004244817.1| - 0.073 13.0 1.4 0.16 11.9 1.1 1.7 2 0 0 2 2 1 0 NACHT domain G-alpha PF00503.20 gi|325968625|ref|YP_004244817.1| - 0.077 12.1 0.1 0.17 11.0 0.1 1.7 1 1 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|325968625|ref|YP_004244817.1| - 0.11 12.3 0.3 0.83 9.3 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|325968625|ref|YP_004244817.1| - 0.11 12.5 0.1 1.7 8.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|325968625|ref|YP_004244817.1| - 0.13 12.0 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968625|ref|YP_004244817.1| - 0.24 10.8 0.0 0.44 9.9 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Rad51 PF08423.11 gi|325968625|ref|YP_004244817.1| - 0.61 9.3 2.6 3 7.0 0.1 2.1 2 0 0 2 2 2 0 Rad51 cobW PF02492.19 gi|325968625|ref|YP_004244817.1| - 0.89 9.1 3.5 0.4 10.2 0.5 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF58 PF01882.18 gi|325968626|ref|YP_004244818.1| - 1.6e-11 44.3 0.0 3.5e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 Glycos_transf_2 PF00535.26 gi|325968627|ref|YP_004244819.1| - 1.6e-34 119.2 0.2 2.2e-34 118.7 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|325968627|ref|YP_004244819.1| - 3.2e-23 82.8 0.0 4.9e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|325968627|ref|YP_004244819.1| - 1.3e-14 54.6 1.2 2e-14 54.0 1.2 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|325968627|ref|YP_004244819.1| - 7.9e-11 41.7 0.9 1.4e-10 40.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|325968627|ref|YP_004244819.1| - 5e-09 36.0 0.0 7.6e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|325968627|ref|YP_004244819.1| - 0.00043 20.7 0.1 0.0011 19.5 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family 2 DUF2207 PF09972.9 gi|325968627|ref|YP_004244819.1| - 0.52 9.0 4.0 0.73 8.5 4.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_5_2 PF16079.5 gi|325968627|ref|YP_004244819.1| - 0.71 10.2 5.8 1.5 9.2 5.8 1.6 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V ABC_tran PF00005.27 gi|325968629|ref|YP_004244821.1| - 1e-29 103.8 0.0 1.3e-29 103.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325968629|ref|YP_004244821.1| - 1e-13 51.8 0.4 8.8e-08 32.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968629|ref|YP_004244821.1| - 7.6e-11 41.9 0.0 7.3e-09 35.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|325968629|ref|YP_004244821.1| - 0.00018 21.1 0.0 0.00031 20.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|325968629|ref|YP_004244821.1| - 0.0003 21.2 0.0 0.00037 20.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|325968629|ref|YP_004244821.1| - 0.00047 20.1 0.0 0.00073 19.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|325968629|ref|YP_004244821.1| - 0.00067 20.2 0.0 0.0012 19.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|325968629|ref|YP_004244821.1| - 0.00098 18.9 0.0 0.0053 16.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|325968629|ref|YP_004244821.1| - 0.0012 19.4 0.0 0.0063 17.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325968629|ref|YP_004244821.1| - 0.0021 18.3 0.4 0.0085 16.4 0.4 1.9 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|325968629|ref|YP_004244821.1| - 0.0035 17.3 0.0 0.0058 16.6 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_15 PF13175.6 gi|325968629|ref|YP_004244821.1| - 0.0047 16.7 0.0 0.28 10.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain Cytidylate_kin PF02224.18 gi|325968629|ref|YP_004244821.1| - 0.0059 16.4 0.6 0.054 13.2 0.6 2.2 1 1 0 1 1 1 1 Cytidylate kinase SbcCD_C PF13558.6 gi|325968629|ref|YP_004244821.1| - 0.0067 16.6 0.1 0.11 12.8 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|325968629|ref|YP_004244821.1| - 0.0094 15.0 0.0 0.017 14.2 0.0 1.4 1 1 0 1 1 1 1 Type II/IV secretion system protein AAA PF00004.29 gi|325968629|ref|YP_004244821.1| - 0.015 15.7 0.0 0.048 14.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|325968629|ref|YP_004244821.1| - 0.019 14.3 0.0 0.058 12.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin ATPase_2 PF01637.18 gi|325968629|ref|YP_004244821.1| - 0.033 14.1 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|325968629|ref|YP_004244821.1| - 0.049 13.2 0.1 0.16 11.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|325968629|ref|YP_004244821.1| - 0.073 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|325968629|ref|YP_004244821.1| - 0.076 13.2 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|325968629|ref|YP_004244821.1| - 0.078 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.9 gi|325968629|ref|YP_004244821.1| - 0.085 11.6 0.2 0.25 10.1 0.0 1.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.18 gi|325968629|ref|YP_004244821.1| - 0.12 11.7 0.1 0.24 10.7 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_19 PF13245.6 gi|325968629|ref|YP_004244821.1| - 0.15 12.4 0.1 0.6 10.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|325968629|ref|YP_004244821.1| - 0.16 11.0 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_14 PF13173.6 gi|325968629|ref|YP_004244821.1| - 0.18 11.9 0.0 0.57 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|325968629|ref|YP_004244821.1| - 0.24 10.1 0.0 0.33 9.7 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein MacB_PCD PF12704.7 gi|325968630|ref|YP_004244822.1| - 5e-07 30.3 2.5 5e-07 30.3 2.5 2.6 3 0 0 3 3 3 1 MacB-like periplasmic core domain Archease PF01951.16 gi|325968632|ref|YP_004244824.1| - 7.9e-40 136.3 0.0 8.8e-40 136.1 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Pox_A14 PF05767.12 gi|325968633|ref|YP_004244825.1| - 0.0028 17.8 2.2 0.0037 17.4 2.2 1.2 1 0 0 1 1 1 1 Poxvirus virion envelope protein A14 DUF2207 PF09972.9 gi|325968633|ref|YP_004244825.1| - 1.7 7.3 4.1 1.7 7.3 4.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PIN PF01850.21 gi|325968634|ref|YP_004244826.1| - 0.00011 22.7 0.1 0.00012 22.6 0.1 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|325968634|ref|YP_004244826.1| - 0.048 14.0 0.0 0.048 14.0 0.0 1.0 1 0 0 1 1 1 0 PIN like domain Glycos_transf_1 PF00534.20 gi|325968637|ref|YP_004244829.1| - 2.1e-29 102.3 0.0 3e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325968637|ref|YP_004244829.1| - 2.8e-19 69.9 0.1 5.3e-19 69.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325968637|ref|YP_004244829.1| - 4e-07 30.3 0.0 9.2e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968637|ref|YP_004244829.1| - 6.1e-07 29.6 0.1 2.8e-06 27.4 0.1 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|325968637|ref|YP_004244829.1| - 4.6e-06 27.2 0.1 2.4e-05 24.9 0.0 2.1 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain TM_helix PF05552.12 gi|325968638|ref|YP_004244830.1| - 3.4e-09 36.5 11.2 3.7e-05 23.6 0.1 3.1 4 0 0 4 4 4 2 Conserved TM helix Colicin_V PF02674.16 gi|325968638|ref|YP_004244830.1| - 0.0012 18.8 19.3 0.12 12.3 6.0 3.1 1 1 2 3 3 3 3 Colicin V production protein Xan_ur_permease PF00860.20 gi|325968638|ref|YP_004244830.1| - 0.0026 16.5 3.8 0.0026 16.5 3.8 1.6 2 0 0 2 2 2 1 Permease family SepA PF17080.5 gi|325968638|ref|YP_004244830.1| - 5 7.5 16.0 1.3 9.4 11.3 2.0 1 1 1 2 2 2 0 Multidrug Resistance efflux pump MscL PF01741.18 gi|325968638|ref|YP_004244830.1| - 7.9 6.8 8.2 5.6 7.3 1.1 2.3 1 1 1 2 2 2 0 Large-conductance mechanosensitive channel, MscL FAD_binding_5 PF00941.21 gi|325968639|ref|YP_004244831.1| - 4.3e-51 173.0 0.0 6.9e-51 172.4 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase Fer2_2 PF01799.20 gi|325968639|ref|YP_004244831.1| - 2.4e-22 78.7 0.1 5e-22 77.7 0.1 1.5 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|325968639|ref|YP_004244831.1| - 1.2e-06 28.3 0.1 3.4e-06 26.9 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain CO_deh_flav_C PF03450.17 gi|325968639|ref|YP_004244831.1| - 3.7e-05 23.8 0.0 0.00012 22.2 0.0 2.0 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_3 PF13085.6 gi|325968639|ref|YP_004244831.1| - 0.00012 22.0 0.1 0.00029 20.8 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain HHH_2 PF12826.7 gi|325968639|ref|YP_004244831.1| - 0.09 12.9 0.0 0.57 10.3 0.0 2.4 3 0 0 3 3 3 0 Helix-hairpin-helix motif Fer2_4 PF13510.6 gi|325968639|ref|YP_004244831.1| - 0.15 12.1 0.4 0.34 11.0 0.4 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|325968640|ref|YP_004244832.1| - 1.4e-129 433.1 0.0 1.6e-129 432.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|325968640|ref|YP_004244832.1| - 4.9e-17 62.3 0.0 8.9e-17 61.4 0.0 1.4 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Ribo_biogen_C PF04034.13 gi|325968641|ref|YP_004244833.1| - 1.6e-36 124.8 0.0 2.1e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|325968641|ref|YP_004244833.1| - 0.0011 18.7 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI HhH-GPD PF00730.25 gi|325968642|ref|YP_004244834.1| - 9.1e-09 35.7 0.0 1.4e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|325968642|ref|YP_004244834.1| - 0.0045 16.8 0.0 0.012 15.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|325968642|ref|YP_004244834.1| - 1.6 9.2 7.4 2.4 8.6 7.4 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Spt4 PF06093.13 gi|325968643|ref|YP_004244835.1| - 3.3e-16 59.2 0.3 4e-16 58.9 0.3 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger UPF0547 PF10571.9 gi|325968643|ref|YP_004244835.1| - 0.00019 21.4 2.7 0.00027 21.0 2.7 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|325968643|ref|YP_004244835.1| - 0.0026 18.5 0.3 0.0031 18.2 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbon family DZR PF12773.7 gi|325968643|ref|YP_004244835.1| - 0.0052 16.8 0.7 0.0076 16.3 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|325968643|ref|YP_004244835.1| - 0.0082 15.5 3.9 0.012 15.0 3.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RRN7 PF11781.8 gi|325968643|ref|YP_004244835.1| - 0.016 14.8 0.2 0.016 14.8 0.2 2.0 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|325968643|ref|YP_004244835.1| - 0.018 14.6 1.4 0.059 12.9 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|325968643|ref|YP_004244835.1| - 0.031 14.3 0.3 0.041 13.9 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|325968643|ref|YP_004244835.1| - 0.046 13.6 1.2 0.07 13.0 1.2 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|325968643|ref|YP_004244835.1| - 0.047 13.4 2.3 0.065 13.0 2.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-P11 PF03854.14 gi|325968643|ref|YP_004244835.1| - 0.072 12.8 1.0 0.15 11.7 0.5 1.7 1 1 1 2 2 2 0 P-11 zinc finger DUF1451 PF07295.11 gi|325968643|ref|YP_004244835.1| - 0.1 12.6 0.4 0.14 12.2 0.4 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|325968643|ref|YP_004244835.1| - 0.33 11.1 3.0 1.3 9.2 3.0 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|325968643|ref|YP_004244835.1| - 1.1 9.7 6.2 0.8 10.0 1.8 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Ribosomal_S24e PF01282.19 gi|325968644|ref|YP_004244836.1| - 6.6e-19 67.6 0.0 6.6e-19 67.6 0.0 1.7 2 0 0 2 2 2 1 Ribosomal protein S24e HTH_40 PF14493.6 gi|325968644|ref|YP_004244836.1| - 0.032 14.7 0.4 0.073 13.5 0.3 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|325968644|ref|YP_004244836.1| - 0.076 12.8 0.1 2.9 7.8 0.0 2.5 1 1 1 2 2 2 0 Homeodomain-like domain T2SSE_N PF05157.15 gi|325968644|ref|YP_004244836.1| - 0.12 12.6 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein E, N-terminal domain B12-binding PF02310.19 gi|325968646|ref|YP_004244838.1| - 5.5e-29 100.7 0.0 1.1e-27 96.4 0.0 2.3 2 0 0 2 2 2 1 B12 binding domain Radical_SAM PF04055.21 gi|325968646|ref|YP_004244838.1| - 2.4e-25 89.8 0.1 9.3e-24 84.7 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|325968646|ref|YP_004244838.1| - 0.00036 20.8 0.2 0.00094 19.5 0.1 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325968646|ref|YP_004244838.1| - 0.0056 16.8 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glyco_hydro_129 PF11308.8 gi|325968646|ref|YP_004244838.1| - 0.013 14.6 0.1 0.019 14.2 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases related to GH101 family, GH129 Peripla_BP_6 PF13458.6 gi|325968646|ref|YP_004244838.1| - 0.066 12.9 0.0 0.29 10.8 0.0 2.0 1 1 1 2 2 2 0 Periplasmic binding protein Radical_SAM PF04055.21 gi|325968647|ref|YP_004244839.1| - 8.9e-25 88.0 0.0 1e-23 84.5 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|325968647|ref|YP_004244839.1| - 2e-10 41.0 0.1 5.6e-10 39.6 0.1 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|325968647|ref|YP_004244839.1| - 9.4e-08 32.4 0.0 2.9e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325968647|ref|YP_004244839.1| - 4.9e-05 23.4 0.0 0.00012 22.2 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_22 PF13309.6 gi|325968647|ref|YP_004244839.1| - 0.011 15.8 0.0 0.034 14.2 0.0 1.8 1 0 0 1 1 1 0 HTH domain AP_endonuc_2 PF01261.24 gi|325968647|ref|YP_004244839.1| - 0.018 14.5 0.0 0.04 13.3 0.0 1.7 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel HMGL-like PF00682.19 gi|325968647|ref|YP_004244839.1| - 0.068 12.7 0.0 0.17 11.4 0.0 1.7 1 1 0 1 1 1 0 HMGL-like DAO PF01266.24 gi|325968648|ref|YP_004244840.1| - 5.7e-14 52.5 1.1 1.5e-08 34.6 0.2 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|325968648|ref|YP_004244840.1| - 1.4e-11 44.1 1.1 4.8e-08 32.5 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|325968648|ref|YP_004244840.1| - 1.6e-11 43.6 0.4 5.9e-11 41.7 0.4 1.8 1 1 0 1 1 1 1 HI0933-like protein Thi4 PF01946.17 gi|325968648|ref|YP_004244840.1| - 4.4e-10 39.2 1.7 2.9e-09 36.5 1.6 2.0 1 1 0 1 1 1 1 Thi4 family Pyr_redox_2 PF07992.14 gi|325968648|ref|YP_004244840.1| - 2.8e-09 36.7 0.1 5.7e-09 35.6 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325968648|ref|YP_004244840.1| - 1.3e-08 34.9 0.3 3.6e-08 33.5 0.1 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|325968648|ref|YP_004244840.1| - 2.5e-08 33.6 0.0 3.4e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|325968648|ref|YP_004244840.1| - 3.1e-08 33.4 0.2 4.6e-08 32.8 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|325968648|ref|YP_004244840.1| - 5.7e-07 28.9 0.1 7.6e-07 28.5 0.1 1.1 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|325968648|ref|YP_004244840.1| - 5e-06 25.6 0.1 0.0073 15.2 0.1 2.2 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 gi|325968648|ref|YP_004244840.1| - 7e-06 25.4 0.5 0.00016 20.9 0.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|325968648|ref|YP_004244840.1| - 1.3e-05 24.6 0.2 2.5e-05 23.7 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325968648|ref|YP_004244840.1| - 3e-05 24.5 0.1 0.00015 22.2 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|325968648|ref|YP_004244840.1| - 3.7e-05 23.8 0.3 0.00012 22.1 0.3 1.8 1 1 0 1 1 1 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|325968648|ref|YP_004244840.1| - 8.7e-05 22.0 0.2 0.00021 20.7 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GMC_oxred_N PF00732.19 gi|325968648|ref|YP_004244840.1| - 0.00049 19.6 0.0 0.072 12.4 0.0 2.2 2 0 0 2 2 2 1 GMC oxidoreductase NAD_binding_7 PF13241.6 gi|325968648|ref|YP_004244840.1| - 0.018 15.4 0.0 0.055 13.9 0.0 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|325968648|ref|YP_004244840.1| - 0.038 14.3 0.0 0.1 12.9 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|325968648|ref|YP_004244840.1| - 0.074 12.3 0.3 0.2 10.9 0.2 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|325968648|ref|YP_004244840.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ETF_QO PF05187.13 gi|325968649|ref|YP_004244841.1| - 4.6e-08 33.1 1.4 6.2e-08 32.7 1.4 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_7 PF12838.7 gi|325968649|ref|YP_004244841.1| - 4.4e-07 30.4 7.0 0.0014 19.2 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|325968649|ref|YP_004244841.1| - 8.7e-07 29.0 4.7 1.1e-06 28.7 4.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968649|ref|YP_004244841.1| - 4.4e-06 26.4 11.3 0.0029 17.6 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325968649|ref|YP_004244841.1| - 2.9e-05 24.2 12.8 4.4e-05 23.6 12.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968649|ref|YP_004244841.1| - 0.00057 19.9 15.3 0.0026 17.8 1.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968649|ref|YP_004244841.1| - 0.00081 19.1 2.0 0.00081 19.1 2.0 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325968649|ref|YP_004244841.1| - 0.0018 18.6 1.0 0.0018 18.6 1.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968649|ref|YP_004244841.1| - 0.002 18.2 11.6 0.0048 17.0 11.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325968649|ref|YP_004244841.1| - 0.019 15.9 1.1 0.019 15.9 1.1 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|325968649|ref|YP_004244841.1| - 0.046 14.2 1.8 0.046 14.2 1.8 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325968649|ref|YP_004244841.1| - 0.23 11.6 17.5 0.38 10.9 3.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|325968649|ref|YP_004244841.1| - 0.92 9.3 7.4 0.68 9.7 1.6 2.1 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.6 gi|325968649|ref|YP_004244841.1| - 2.9 8.5 15.0 0.15 12.6 2.7 2.2 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|325968649|ref|YP_004244841.1| - 7.5 7.2 13.6 0.62 10.6 2.7 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|325968649|ref|YP_004244841.1| - 7.5 7.7 17.5 0.43 11.6 4.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain ETF PF01012.21 gi|325968650|ref|YP_004244842.1| - 5.6e-37 127.4 0.0 7.6e-37 127.0 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|325968651|ref|YP_004244843.1| - 1.8e-44 151.8 0.0 2.3e-44 151.4 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|325968651|ref|YP_004244843.1| - 8.9e-32 109.0 1.0 2e-31 107.9 1.0 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.22 gi|325968651|ref|YP_004244843.1| - 0.0059 16.3 0.6 1.2 8.8 0.8 3.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DFP PF04127.15 gi|325968652|ref|YP_004244844.1| - 6.7e-41 140.2 0.0 1.9e-40 138.7 0.0 1.7 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|325968652|ref|YP_004244844.1| - 5.2e-33 114.0 0.4 7.9e-33 113.4 0.4 1.3 1 0 0 1 1 1 1 Flavoprotein MazE_antitoxin PF04014.18 gi|325968653|ref|YP_004244845.1| - 3e-06 27.0 0.0 0.0013 18.6 0.0 2.5 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325968653|ref|YP_004244845.1| - 0.044 14.2 0.1 0.28 11.6 0.1 1.9 2 0 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin PDDEXK_10 PF07788.11 gi|325968654|ref|YP_004244846.1| - 0.017 15.0 0.5 0.044 13.7 0.1 1.8 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily MqsR_toxin PF15723.5 gi|325968654|ref|YP_004244846.1| - 0.15 12.4 0.1 0.62 10.5 0.1 1.9 1 1 1 2 2 2 0 Motility quorum-sensing regulator, toxin of MqsA PDDEXK_10 PF07788.11 gi|325968655|ref|YP_004244847.1| - 6.2e-15 54.9 0.1 7.5e-15 54.6 0.1 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|325968655|ref|YP_004244847.1| - 0.028 14.6 0.1 0.053 13.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) AHJR-like PF18743.1 gi|325968655|ref|YP_004244847.1| - 0.069 12.7 0.0 0.079 12.5 0.0 1.1 1 0 0 1 1 1 0 REase_AHJR-like Phage_holin_3_6 PF07332.11 gi|325968656|ref|YP_004244848.1| - 0.0024 17.9 2.7 0.0027 17.7 2.2 1.3 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF3169 PF11368.8 gi|325968656|ref|YP_004244848.1| - 0.0025 17.4 0.2 0.0031 17.1 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3169) DUF2254 PF10011.9 gi|325968656|ref|YP_004244848.1| - 0.009 14.9 1.3 0.016 14.1 1.3 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2254) DUF4574 PF15141.6 gi|325968656|ref|YP_004244848.1| - 0.011 15.7 0.5 0.017 15.0 0.1 1.6 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 Wzy_C PF04932.15 gi|325968656|ref|YP_004244848.1| - 0.015 14.9 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 O-Antigen ligase CLN3 PF02487.17 gi|325968656|ref|YP_004244848.1| - 0.019 14.1 0.2 0.021 13.9 0.2 1.1 1 0 0 1 1 1 0 CLN3 protein DUF4131 PF13567.6 gi|325968656|ref|YP_004244848.1| - 0.026 14.2 0.0 0.031 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3784 PF12650.7 gi|325968656|ref|YP_004244848.1| - 0.13 12.5 7.0 0.23 11.7 7.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) SARAF PF06682.12 gi|325968656|ref|YP_004244848.1| - 0.32 10.6 4.2 2.4 7.7 4.2 2.0 1 1 0 1 1 1 0 SOCE-associated regulatory factor of calcium homoeostasis DUF417 PF04224.12 gi|325968656|ref|YP_004244848.1| - 1.1 8.8 6.7 7.7 6.0 6.7 2.1 1 1 0 1 1 1 0 Protein of unknown function, DUF417 DUF3987 PF13148.6 gi|325968656|ref|YP_004244848.1| - 1.8 7.5 5.1 2.3 7.1 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) PQQ PF01011.21 gi|325968658|ref|YP_004244850.1| - 7.6e-13 47.7 11.1 0.023 14.6 0.1 6.5 5 1 0 5 5 5 4 PQQ enzyme repeat PQQ_2 PF13360.6 gi|325968658|ref|YP_004244850.1| - 2.5e-11 43.6 5.4 2.7e-07 30.4 0.5 2.5 2 1 1 3 3 3 2 PQQ-like domain WD40 PF00400.32 gi|325968658|ref|YP_004244850.1| - 3.9e-05 24.3 1.0 4.6 8.3 0.1 5.7 4 1 0 4 4 4 1 WD domain, G-beta repeat PD40 PF07676.12 gi|325968658|ref|YP_004244850.1| - 0.0049 16.8 1.1 2.4 8.2 0.0 3.8 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat PQQ_3 PF13570.6 gi|325968658|ref|YP_004244850.1| - 0.08 13.5 26.6 19 5.9 0.3 8.3 7 2 0 7 7 7 0 PQQ-like domain T2SS-T3SS_pil_N PF13629.6 gi|325968658|ref|YP_004244850.1| - 0.19 11.5 1.2 12 5.7 0.1 3.3 3 0 0 3 3 3 0 Pilus formation protein N terminal region SHP PF03579.13 gi|325968659|ref|YP_004244851.1| - 0.056 13.4 5.0 0.059 13.3 2.8 1.9 2 0 0 2 2 2 0 Small hydrophobic protein Acetyltransf_1 PF00583.25 gi|325968660|ref|YP_004244852.1| - 4e-07 30.3 0.0 4.2e-07 30.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|325968660|ref|YP_004244852.1| - 2e-05 24.6 0.0 2.1e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|325968660|ref|YP_004244852.1| - 5.4e-05 23.5 0.0 5.7e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|325968660|ref|YP_004244852.1| - 0.00011 22.1 0.0 0.00012 22.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|325968660|ref|YP_004244852.1| - 0.0014 18.5 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|325968660|ref|YP_004244852.1| - 0.0049 17.5 0.0 0.0053 17.4 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain HALZ PF02183.18 gi|325968662|ref|YP_004244854.1| - 9.6e-07 28.9 12.3 0.012 15.9 1.9 3.3 1 1 2 3 3 3 3 Homeobox associated leucine zipper ZapB PF06005.12 gi|325968662|ref|YP_004244854.1| - 0.00025 21.4 0.7 0.00059 20.2 0.5 1.6 1 1 1 2 2 2 1 Cell division protein ZapB Sec34 PF04136.15 gi|325968662|ref|YP_004244854.1| - 0.00032 20.6 3.7 0.00051 19.9 3.7 1.3 1 0 0 1 1 1 1 Sec34-like family Spc7 PF08317.11 gi|325968662|ref|YP_004244854.1| - 0.0004 19.4 0.2 0.00058 18.8 0.2 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein SHE3 PF17078.5 gi|325968662|ref|YP_004244854.1| - 0.0005 19.9 5.0 0.00087 19.1 5.0 1.4 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 Jnk-SapK_ap_N PF09744.9 gi|325968662|ref|YP_004244854.1| - 0.00065 20.0 0.6 0.00089 19.5 0.6 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 GAS PF13851.6 gi|325968662|ref|YP_004244854.1| - 0.0011 18.3 0.9 0.002 17.5 0.9 1.3 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding HemX PF04375.14 gi|325968662|ref|YP_004244854.1| - 0.0037 16.6 0.1 0.0048 16.2 0.1 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase EzrA PF06160.12 gi|325968662|ref|YP_004244854.1| - 0.0063 14.8 0.9 0.0082 14.4 0.9 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA SKA2 PF16740.5 gi|325968662|ref|YP_004244854.1| - 0.0097 15.7 0.4 0.016 15.0 0.4 1.2 1 0 0 1 1 1 1 Spindle and kinetochore-associated protein 2 Taxilin PF09728.9 gi|325968662|ref|YP_004244854.1| - 0.014 14.6 0.1 0.02 14.1 0.1 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Prefoldin_2 PF01920.20 gi|325968662|ref|YP_004244854.1| - 0.018 15.0 0.3 0.035 14.1 0.2 1.5 1 1 0 1 1 1 0 Prefoldin subunit HAUS-augmin3 PF14932.6 gi|325968662|ref|YP_004244854.1| - 0.018 14.6 4.4 0.058 13.0 4.4 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 FapA PF03961.13 gi|325968662|ref|YP_004244854.1| - 0.023 13.3 0.1 0.031 12.9 0.1 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A APG6_N PF17675.1 gi|325968662|ref|YP_004244854.1| - 0.024 15.2 0.0 0.034 14.7 0.0 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region IFT57 PF10498.9 gi|325968662|ref|YP_004244854.1| - 0.026 13.5 3.4 0.036 13.0 3.4 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 CLZ PF16526.5 gi|325968662|ref|YP_004244854.1| - 0.029 14.7 0.9 0.51 10.7 0.7 2.2 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Mod_r PF07200.13 gi|325968662|ref|YP_004244854.1| - 0.037 14.1 6.4 0.083 13.0 6.4 1.5 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Bap31_Bap29_C PF18035.1 gi|325968662|ref|YP_004244854.1| - 0.039 14.0 5.6 1.2 9.2 1.2 2.5 1 1 1 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF4472 PF14739.6 gi|325968662|ref|YP_004244854.1| - 0.046 14.4 0.5 0.091 13.5 0.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4472) Macoilin PF09726.9 gi|325968662|ref|YP_004244854.1| - 0.054 12.1 0.2 0.073 11.6 0.2 1.1 1 0 0 1 1 1 0 Macoilin family FliD_N PF02465.18 gi|325968662|ref|YP_004244854.1| - 0.056 14.1 8.5 0.49 11.1 8.5 2.3 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 N-terminus STAT_alpha PF01017.20 gi|325968662|ref|YP_004244854.1| - 0.057 13.3 0.9 0.086 12.7 0.9 1.2 1 0 0 1 1 1 0 STAT protein, all-alpha domain TMF_TATA_bd PF12325.8 gi|325968662|ref|YP_004244854.1| - 0.062 13.5 0.5 0.18 12.0 0.2 1.6 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding OmpH PF03938.14 gi|325968662|ref|YP_004244854.1| - 0.12 12.8 0.1 0.18 12.1 0.1 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) BLOC1_2 PF10046.9 gi|325968662|ref|YP_004244854.1| - 0.16 12.3 5.5 0.29 11.4 5.5 1.4 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BRE1 PF08647.11 gi|325968662|ref|YP_004244854.1| - 0.17 12.0 1.1 0.44 10.6 1.1 1.6 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase Cep57_MT_bd PF06657.13 gi|325968662|ref|YP_004244854.1| - 0.19 12.2 1.4 0.78 10.2 0.2 2.3 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 DivIC PF04977.15 gi|325968662|ref|YP_004244854.1| - 0.2 11.5 2.0 0.54 10.1 0.8 2.0 1 1 1 2 2 2 0 Septum formation initiator FtsL PF04999.13 gi|325968662|ref|YP_004244854.1| - 0.2 11.6 0.8 0.87 9.6 0.1 2.0 1 1 1 2 2 2 0 Cell division protein FtsL bZIP_1 PF00170.21 gi|325968662|ref|YP_004244854.1| - 0.6 10.3 3.1 17 5.6 0.3 2.1 1 1 1 2 2 2 0 bZIP transcription factor Dynactin_p22 PF07426.11 gi|325968662|ref|YP_004244854.1| - 0.63 9.9 8.6 2.9 7.7 5.0 2.1 1 1 1 2 2 2 0 Dynactin subunit p22 DUF4407 PF14362.6 gi|325968662|ref|YP_004244854.1| - 0.87 8.9 8.1 0.049 13.0 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) LemA PF04011.12 gi|325968662|ref|YP_004244854.1| - 0.89 9.4 5.3 1.4 8.8 5.3 1.2 1 0 0 1 1 1 0 LemA family DUF1033 PF06279.11 gi|325968662|ref|YP_004244854.1| - 0.96 9.6 4.0 8.5 6.6 0.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1033) AI-2E_transport PF01594.16 gi|325968662|ref|YP_004244854.1| - 2 7.5 6.9 3.5 6.7 0.4 2.4 2 0 0 2 2 2 0 AI-2E family transporter T4SS PF07996.11 gi|325968662|ref|YP_004244854.1| - 2.6 8.4 6.4 5.4 7.4 5.9 1.7 1 1 0 1 1 1 0 Type IV secretion system proteins DUF5344 PF17279.2 gi|325968662|ref|YP_004244854.1| - 3.1 8.4 9.3 17 6.0 0.4 3.0 1 1 1 2 2 2 0 Family of unknown function (DUF5344) Adeno_hexon_C PF03678.14 gi|325968663|ref|YP_004244855.1| - 0.097 12.1 0.2 0.15 11.5 0.2 1.2 1 0 0 1 1 1 0 Hexon, adenovirus major coat protein, C-terminal domain zf-RING_7 PF02591.15 gi|325968664|ref|YP_004244856.1| - 0.00051 20.2 3.1 0.26 11.5 0.0 2.2 2 0 0 2 2 2 2 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|325968664|ref|YP_004244856.1| - 0.00062 19.7 4.1 0.00093 19.1 4.1 1.3 1 1 0 1 1 1 1 Transposase zinc-ribbon domain DUF3268 PF11672.8 gi|325968664|ref|YP_004244856.1| - 0.0015 18.9 1.6 0.0019 18.5 1.6 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain zf-C2HC_2 PF13913.6 gi|325968664|ref|YP_004244856.1| - 0.045 13.7 7.2 1.2 9.1 0.6 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Cys_rich_CPXG PF14255.6 gi|325968664|ref|YP_004244856.1| - 0.046 13.6 0.4 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-C2H2 PF00096.26 gi|325968664|ref|YP_004244856.1| - 0.046 14.2 3.4 5 7.8 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Lar_restr_allev PF14354.6 gi|325968664|ref|YP_004244856.1| - 0.09 13.2 1.5 0.26 11.7 1.5 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar Terminase_GpA PF05876.12 gi|325968664|ref|YP_004244856.1| - 0.13 10.8 0.1 0.15 10.6 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.6 gi|325968664|ref|YP_004244856.1| - 0.14 11.6 2.0 0.89 9.1 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.11 gi|325968664|ref|YP_004244856.1| - 0.14 11.7 4.6 2.7 7.6 0.8 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Desulfoferrod_N PF06397.12 gi|325968664|ref|YP_004244856.1| - 0.43 10.2 2.5 1.3 8.7 0.4 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-C2H2_4 PF13894.6 gi|325968664|ref|YP_004244856.1| - 1.1 10.3 5.1 14 6.8 0.3 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger MR_MLE_C PF13378.6 gi|325968665|ref|YP_004244857.1| - 8.7e-43 146.4 0.0 1.2e-42 146.0 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|325968665|ref|YP_004244857.1| - 3.1e-11 43.5 0.0 5.4e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GD_AH_C PF04295.13 gi|325968666|ref|YP_004244858.1| - 2.6e-119 398.6 0.0 2.9e-119 398.4 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus WHEP-TRS PF00458.20 gi|325968666|ref|YP_004244858.1| - 0.0031 17.6 0.2 0.0075 16.4 0.2 1.5 1 0 0 1 1 1 1 WHEP-TRS domain SAF PF08666.12 gi|325968667|ref|YP_004244859.1| - 2.8e-16 59.9 1.3 3.5e-16 59.6 1.3 1.1 1 0 0 1 1 1 1 SAF domain DUF2190 PF09956.9 gi|325968667|ref|YP_004244859.1| - 0.0025 18.3 0.8 0.9 10.1 0.1 2.1 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2190) PT-HINT PF07591.11 gi|325968667|ref|YP_004244859.1| - 0.06 13.6 0.6 18 5.6 0.0 3.0 1 1 2 3 3 3 0 Pretoxin HINT domain FCD PF07729.12 gi|325968668|ref|YP_004244860.1| - 8e-27 94.1 1.7 8e-27 94.1 1.7 1.5 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 gi|325968668|ref|YP_004244860.1| - 1.6e-17 62.9 0.9 3.9e-17 61.6 0.9 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|325968668|ref|YP_004244860.1| - 3.4e-05 23.3 0.0 8.8e-05 22.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|325968668|ref|YP_004244860.1| - 0.00017 21.5 0.2 0.00038 20.4 0.2 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|325968668|ref|YP_004244860.1| - 0.00027 20.8 0.1 0.00064 19.6 0.1 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|325968668|ref|YP_004244860.1| - 0.00078 19.6 0.0 0.0015 18.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|325968668|ref|YP_004244860.1| - 0.0024 18.3 0.2 0.014 15.8 0.1 2.4 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|325968668|ref|YP_004244860.1| - 0.0024 17.8 0.1 0.0067 16.4 0.1 1.7 1 0 0 1 1 1 1 HTH domain HemN_C PF06969.16 gi|325968668|ref|YP_004244860.1| - 0.0036 17.3 0.2 0.049 13.7 0.0 2.3 2 0 0 2 2 2 1 HemN C-terminal domain MarR_2 PF12802.7 gi|325968668|ref|YP_004244860.1| - 0.0098 15.8 0.2 0.029 14.2 0.2 1.8 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|325968668|ref|YP_004244860.1| - 0.012 15.6 0.1 0.03 14.3 0.1 1.7 2 0 0 2 2 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|325968668|ref|YP_004244860.1| - 0.014 15.2 0.5 0.038 13.8 0.5 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|325968668|ref|YP_004244860.1| - 0.02 14.8 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family PaaX PF07848.12 gi|325968668|ref|YP_004244860.1| - 0.027 14.7 0.7 1.1 9.5 0.1 2.5 2 0 0 2 2 2 0 PaaX-like protein HTH_54 PF18607.1 gi|325968668|ref|YP_004244860.1| - 0.083 13.0 0.0 0.32 11.1 0.0 1.9 2 0 0 2 2 2 0 ParA helix turn helix domain TFIIE_alpha PF02002.17 gi|325968668|ref|YP_004244860.1| - 0.087 12.7 0.8 0.21 11.4 0.1 2.2 2 2 0 2 2 2 0 TFIIE alpha subunit MDMPI_N PF11716.8 gi|325968668|ref|YP_004244860.1| - 1.4 9.6 6.5 2.2 8.9 0.2 2.5 2 1 1 3 3 3 0 Mycothiol maleylpyruvate isomerase N-terminal domain Sugar_tr PF00083.24 gi|325968669|ref|YP_004244861.1| - 1.8e-16 60.1 43.7 3.9e-12 45.8 14.7 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|325968669|ref|YP_004244861.1| - 4.5e-14 52.1 60.6 4.5e-14 52.1 60.6 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily Abhydrolase_9_N PF15420.6 gi|325968669|ref|YP_004244861.1| - 2.2 8.2 9.9 0.042 13.9 1.2 2.4 2 1 0 2 2 2 0 Alpha/beta-hydrolase family N-terminus Amidohydro_3 PF07969.11 gi|325968671|ref|YP_004244863.1| - 2.1e-57 195.7 0.0 2.4e-57 195.5 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|325968671|ref|YP_004244863.1| - 2.6e-15 56.6 0.5 5.6e-12 45.6 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family DUF3991 PF13154.6 gi|325968671|ref|YP_004244863.1| - 0.054 13.9 0.0 0.14 12.5 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3991) Peptidase_M20 PF01546.28 gi|325968672|ref|YP_004244864.1| - 6.4e-27 94.6 0.0 8.8e-27 94.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|325968672|ref|YP_004244864.1| - 5.9e-07 29.4 0.0 8.8e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 gi|325968672|ref|YP_004244864.1| - 0.0016 18.3 0.0 0.0039 17.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|325968672|ref|YP_004244864.1| - 0.12 11.4 0.0 4.2 6.3 0.0 2.5 2 1 0 2 2 2 0 M42 glutamyl aminopeptidase Sugar_tr PF00083.24 gi|325968673|ref|YP_004244865.1| - 1.4e-19 70.3 22.5 1.2e-14 54.1 6.9 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|325968673|ref|YP_004244865.1| - 1.2e-18 67.1 49.1 2.2e-11 43.3 20.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily AA_permease PF00324.21 gi|325968674|ref|YP_004244866.1| - 4.3e-23 81.7 43.0 6.5e-23 81.1 43.0 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|325968674|ref|YP_004244866.1| - 8.5e-20 71.0 50.3 1.3e-19 70.4 50.3 1.2 1 0 0 1 1 1 1 Amino acid permease DUF4006 PF13179.6 gi|325968674|ref|YP_004244866.1| - 0.13 12.2 0.2 0.81 9.6 0.2 2.4 1 0 0 1 1 1 0 Family of unknown function (DUF4006) FmdA_AmdA PF03069.15 gi|325968675|ref|YP_004244867.1| - 1.3e-55 188.8 0.0 2.7e-31 108.8 0.1 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family RBD PF02196.15 gi|325968675|ref|YP_004244867.1| - 0.21 11.7 0.0 7.3 6.8 0.0 2.6 2 0 0 2 2 2 0 Raf-like Ras-binding domain 2-oxoacid_dh PF00198.23 gi|325968676|ref|YP_004244868.1| - 7.2e-31 107.4 0.0 1.3e-30 106.6 0.0 1.3 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) OsmC PF02566.19 gi|325968676|ref|YP_004244868.1| - 9.9e-23 80.5 0.0 1.8e-22 79.7 0.0 1.4 1 0 0 1 1 1 1 OsmC-like protein CAT PF00302.18 gi|325968676|ref|YP_004244868.1| - 0.00064 19.7 0.0 0.00089 19.2 0.0 1.2 1 0 0 1 1 1 1 Chloramphenicol acetyltransferase MFS_1 PF07690.16 gi|325968677|ref|YP_004244869.1| - 1.2e-21 77.1 43.7 6.1e-18 64.9 34.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2970 PF11174.8 gi|325968677|ref|YP_004244869.1| - 0.81 9.6 5.6 9.2 6.2 0.1 4.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2970) AFOR_C PF01314.18 gi|325968678|ref|YP_004244870.1| - 4.1e-100 335.4 0.0 5.5e-100 335.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|325968678|ref|YP_004244870.1| - 1.4e-67 227.5 0.1 2.4e-67 226.7 0.1 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CoA_trans PF01144.23 gi|325968680|ref|YP_004244872.1| - 7.3e-27 94.2 0.1 4.9e-22 78.4 0.0 3.1 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|325968680|ref|YP_004244872.1| - 0.0026 16.2 0.0 0.0039 15.6 0.0 1.2 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter Hydrolase_4 PF12146.8 gi|325968681|ref|YP_004244873.1| - 6.4e-10 38.7 0.1 1.4e-09 37.6 0.1 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|325968681|ref|YP_004244873.1| - 3e-08 34.5 0.5 5.8e-08 33.6 0.3 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.12 gi|325968681|ref|YP_004244873.1| - 3e-07 29.4 0.0 0.00026 19.8 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Peptidase_S15 PF02129.18 gi|325968681|ref|YP_004244873.1| - 3.3e-07 30.2 0.1 5.7e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|325968681|ref|YP_004244873.1| - 7.1e-06 25.9 0.3 1.2e-05 25.1 0.3 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.18 gi|325968681|ref|YP_004244873.1| - 6.6e-05 22.6 0.0 0.018 14.6 0.0 2.3 2 0 0 2 2 2 2 Dienelactone hydrolase family Peptidase_S9 PF00326.21 gi|325968681|ref|YP_004244873.1| - 0.0004 19.9 0.2 0.00089 18.8 0.2 1.6 1 1 0 1 1 1 1 Prolyl oligopeptidase family BAAT_C PF08840.11 gi|325968681|ref|YP_004244873.1| - 0.064 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.20 gi|325968681|ref|YP_004244873.1| - 0.17 11.5 0.4 0.8 9.3 0.4 1.9 1 1 0 1 1 1 0 Putative esterase Aldedh PF00171.22 gi|325968682|ref|YP_004244874.1| - 1.3e-156 521.7 0.0 1.6e-156 521.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family RHH_3 PF12651.7 gi|325968682|ref|YP_004244874.1| - 0.01 15.8 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix domain OmdA PF13376.6 gi|325968682|ref|YP_004244874.1| - 0.031 14.3 0.4 0.083 12.9 0.4 1.6 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Aminotran_3 PF00202.21 gi|325968683|ref|YP_004244875.1| - 1.2e-107 360.0 0.0 1.4e-107 359.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Spermine_synth PF01564.17 gi|325968684|ref|YP_004244876.1| - 9e-51 172.0 0.0 1.2e-50 171.5 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|325968684|ref|YP_004244876.1| - 5.9e-10 38.9 0.0 1.1e-09 38.0 0.0 1.4 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|325968684|ref|YP_004244876.1| - 1.8e-05 25.3 0.0 4.1e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|325968684|ref|YP_004244876.1| - 0.00027 20.8 0.0 0.0005 20.0 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_12 PF08242.12 gi|325968684|ref|YP_004244876.1| - 0.0009 19.9 0.0 0.0015 19.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|325968684|ref|YP_004244876.1| - 0.035 13.7 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF43 PF01861.16 gi|325968684|ref|YP_004244876.1| - 0.038 13.2 0.1 0.06 12.6 0.1 1.5 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Methyltransf_5 PF01795.19 gi|325968684|ref|YP_004244876.1| - 0.2 11.1 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 MraW methylase family Aminotran_3 PF00202.21 gi|325968685|ref|YP_004244877.1| - 8.8e-63 212.3 0.0 1.1e-62 212.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III DUF4972 PF16342.5 gi|325968685|ref|YP_004244877.1| - 0.081 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4972) Arginase PF00491.21 gi|325968686|ref|YP_004244878.1| - 2.4e-79 266.8 0.0 3.1e-79 266.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family AA_permease_2 PF13520.6 gi|325968687|ref|YP_004244879.1| - 2.9e-30 105.4 69.7 3.6e-30 105.1 69.7 1.1 1 0 0 1 1 1 1 Amino acid permease DAO PF01266.24 gi|325968688|ref|YP_004244880.1| - 1.8e-11 44.2 0.0 2.2e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase GGGtGRT PF14057.6 gi|325968688|ref|YP_004244880.1| - 0.011 14.8 0.1 0.82 8.6 0.0 2.1 1 1 1 2 2 2 0 GGGtGRT protein FAO_M PF16350.5 gi|325968688|ref|YP_004244880.1| - 0.03 14.6 0.0 0.062 13.7 0.0 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase central domain Sacchrp_dh_NADP PF03435.18 gi|325968689|ref|YP_004244881.1| - 3e-12 46.9 0.2 1.2e-11 45.0 0.2 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Sacchrp_dh_C PF16653.5 gi|325968689|ref|YP_004244881.1| - 3.3e-09 37.2 0.0 1.3e-08 35.3 0.0 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Epimerase PF01370.21 gi|325968689|ref|YP_004244881.1| - 1.8e-07 30.9 0.1 3.2e-07 30.0 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|325968689|ref|YP_004244881.1| - 0.0003 20.8 0.0 0.00049 20.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|325968689|ref|YP_004244881.1| - 0.00038 19.6 0.2 0.00069 18.7 0.2 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family K_oxygenase PF13434.6 gi|325968689|ref|YP_004244881.1| - 0.028 13.6 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_4 PF07993.12 gi|325968689|ref|YP_004244881.1| - 0.076 12.2 0.1 0.16 11.1 0.0 1.5 2 0 0 2 2 2 0 Male sterility protein RmlD_sub_bind PF04321.17 gi|325968689|ref|YP_004244881.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain AFOR_C PF01314.18 gi|325968690|ref|YP_004244882.1| - 8e-117 390.5 0.0 9.6e-117 390.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|325968690|ref|YP_004244882.1| - 4.3e-69 232.3 0.0 6.3e-69 231.8 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AA_permease PF00324.21 gi|325968691|ref|YP_004244883.1| - 2.7e-23 82.3 48.5 3.5e-23 81.9 48.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|325968691|ref|YP_004244883.1| - 6.4e-18 64.8 50.9 8.9e-18 64.3 50.7 1.3 1 1 0 1 1 1 1 Amino acid permease Aminotran_3 PF00202.21 gi|325968692|ref|YP_004244884.1| - 3.5e-96 322.3 0.0 4.2e-96 322.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aldedh PF00171.22 gi|325968693|ref|YP_004244885.1| - 4.9e-119 397.9 0.0 5.6e-119 397.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1256 PF06866.11 gi|325968693|ref|YP_004244885.1| - 0.0013 18.2 0.0 0.0027 17.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1256) Methyltransf_11 PF08241.12 gi|325968694|ref|YP_004244886.1| - 3e-19 69.4 0.0 5e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968694|ref|YP_004244886.1| - 1.3e-16 61.0 0.0 2.4e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325968694|ref|YP_004244886.1| - 1.6e-15 57.3 0.0 2.1e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325968694|ref|YP_004244886.1| - 1.7e-12 47.4 0.0 2.4e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|325968694|ref|YP_004244886.1| - 5.7e-08 32.4 0.0 8.2e-08 31.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|325968694|ref|YP_004244886.1| - 6.2e-08 33.3 0.0 1.1e-07 32.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|325968694|ref|YP_004244886.1| - 2.9e-06 27.0 0.0 8.2e-06 25.5 0.0 1.6 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW FtsJ PF01728.19 gi|325968694|ref|YP_004244886.1| - 0.00091 19.4 0.0 0.0014 18.8 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase TehB PF03848.14 gi|325968694|ref|YP_004244886.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB UPF0180 PF03698.13 gi|325968694|ref|YP_004244886.1| - 0.0069 16.5 0.0 16 5.8 0.0 3.3 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0180) MTS PF05175.14 gi|325968694|ref|YP_004244886.1| - 0.031 13.8 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain DUF3081 PF11280.8 gi|325968694|ref|YP_004244886.1| - 0.088 12.6 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3081) PCMT PF01135.19 gi|325968694|ref|YP_004244886.1| - 0.1 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Metallophos PF00149.28 gi|325968695|ref|YP_004244887.1| - 1.7e-05 25.5 0.3 0.00017 22.2 0.3 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|325968695|ref|YP_004244887.1| - 0.00017 21.9 0.0 0.014 15.6 0.0 2.3 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain NTP_transf_5 PF14907.6 gi|325968696|ref|YP_004244888.1| - 2.8e-05 23.9 0.0 3.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase DUF996 PF06195.13 gi|325968697|ref|YP_004244889.1| - 1.9e-29 102.7 19.1 1.9e-29 102.7 19.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF308 PF03729.13 gi|325968697|ref|YP_004244889.1| - 0.096 13.0 38.9 0.23 11.8 14.1 3.3 2 1 0 2 2 2 0 Short repeat of unknown function (DUF308) Claudin_2 PF13903.6 gi|325968697|ref|YP_004244889.1| - 0.16 11.7 16.6 0.6 9.8 4.2 2.3 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DHHC PF01529.20 gi|325968697|ref|YP_004244889.1| - 0.18 11.9 14.8 0.23 11.6 3.5 2.1 2 0 0 2 2 2 0 DHHC palmitoyltransferase DUF973 PF06157.11 gi|325968697|ref|YP_004244889.1| - 0.21 10.6 31.4 0.85 8.6 20.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF973) Colicin_V PF02674.16 gi|325968697|ref|YP_004244889.1| - 0.66 9.9 21.0 0.95 9.4 6.6 2.3 2 0 0 2 2 2 0 Colicin V production protein Claudin_3 PF06653.11 gi|325968697|ref|YP_004244889.1| - 2.2 8.2 17.3 5.2 7.0 5.6 2.4 2 0 0 2 2 2 0 Tight junction protein, Claudin-like Clc-like PF07062.12 gi|325968699|ref|YP_004244891.1| - 3.7 7.0 13.0 1.1 8.7 9.8 1.6 1 1 0 1 1 1 0 Clc-like DUF4173 PF13777.6 gi|325968699|ref|YP_004244891.1| - 4.4 6.7 21.3 2.6 7.5 7.6 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4173) DUF86 PF01934.17 gi|325968702|ref|YP_004244894.1| - 1.1e-18 67.2 0.1 1.3e-18 66.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|325968703|ref|YP_004244895.1| - 0.19 11.8 0.0 0.31 11.1 0.0 1.4 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Ribosomal_S30 PF04758.14 gi|325968704|ref|YP_004244896.1| - 6.6e-06 26.2 4.0 8.7e-06 25.8 4.0 1.2 1 1 0 1 1 1 1 Ribosomal protein S30 LytR_C PF13399.6 gi|325968705|ref|YP_004244897.1| - 0.014 16.3 0.0 1.3 10.0 0.0 2.5 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator LAGLIDADG_3 PF14528.6 gi|325968705|ref|YP_004244897.1| - 0.029 14.7 0.9 1.2 9.5 0.0 3.7 4 1 0 4 4 4 0 LAGLIDADG-like domain Sld5 PF05916.11 gi|325968709|ref|YP_004244901.1| - 4.8e-05 23.8 0.3 6.1e-05 23.4 0.3 1.1 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 gi|325968710|ref|YP_004244902.1| - 1e-102 342.0 0.0 1.6e-102 341.4 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|325968710|ref|YP_004244902.1| - 7.2e-36 122.8 0.0 1.5e-35 121.8 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|325968710|ref|YP_004244902.1| - 1.6e-29 102.2 2.3 1.6e-29 102.2 2.3 2.1 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|325968710|ref|YP_004244902.1| - 4.1e-10 40.2 0.1 1.1e-09 38.8 0.1 1.7 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|325968710|ref|YP_004244902.1| - 2.6e-09 36.8 0.1 3.7e-06 26.5 0.0 2.4 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|325968710|ref|YP_004244902.1| - 6.5e-08 32.5 0.0 1.5e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|325968710|ref|YP_004244902.1| - 1.7e-05 24.8 0.0 4.4e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.10 gi|325968710|ref|YP_004244902.1| - 0.00032 20.8 1.6 0.00062 19.8 1.6 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|325968710|ref|YP_004244902.1| - 0.002 17.8 3.7 0.37 10.6 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin metal binding domain Sigma54_activat PF00158.26 gi|325968710|ref|YP_004244902.1| - 0.0048 16.6 0.1 0.024 14.4 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|325968710|ref|YP_004244902.1| - 0.0091 16.4 0.1 0.065 13.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325968710|ref|YP_004244902.1| - 0.011 16.2 0.7 0.077 13.4 0.7 2.6 1 1 0 1 1 1 0 AAA ATPase domain HypA PF01155.19 gi|325968710|ref|YP_004244902.1| - 0.015 15.3 0.2 0.031 14.3 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AbiEi_4 PF13338.6 gi|325968710|ref|YP_004244902.1| - 0.015 15.5 0.0 0.078 13.1 0.0 2.3 2 0 0 2 2 1 0 Transcriptional regulator, AbiEi antitoxin NTPase_1 PF03266.15 gi|325968710|ref|YP_004244902.1| - 0.034 14.0 0.8 2.3 8.1 0.5 2.7 1 1 1 2 2 2 0 NTPase RuvB_N PF05496.12 gi|325968710|ref|YP_004244902.1| - 0.037 13.8 0.5 0.17 11.6 0.5 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|325968710|ref|YP_004244902.1| - 0.039 14.2 0.5 6 7.1 0.2 3.4 2 1 0 2 2 2 0 AAA domain DZR PF12773.7 gi|325968710|ref|YP_004244902.1| - 0.04 13.9 0.4 0.071 13.1 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|325968710|ref|YP_004244902.1| - 0.11 12.0 0.4 21 4.7 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|325968710|ref|YP_004244902.1| - 0.34 10.7 4.2 7.5 6.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|325968710|ref|YP_004244902.1| - 0.34 10.8 3.1 0.38 10.7 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|325968710|ref|YP_004244902.1| - 0.38 10.2 3.9 2.7 7.5 0.9 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|325968710|ref|YP_004244902.1| - 0.75 9.5 2.1 1.7 8.3 0.5 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding AAA_30 PF13604.6 gi|325968710|ref|YP_004244902.1| - 1.8 8.3 5.7 0.41 10.3 1.9 1.8 2 0 0 2 2 2 0 AAA domain YhfH PF14149.6 gi|325968710|ref|YP_004244902.1| - 5.7 7.0 5.0 16 5.6 1.0 2.5 2 0 0 2 2 2 0 YhfH-like protein DNA_pol3_finger PF17657.1 gi|325968711|ref|YP_004244903.1| - 0.087 12.2 0.0 0.097 12.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial DNA polymerase III alpha subunit finger domain LnmK_N_HDF PF18238.1 gi|325968711|ref|YP_004244903.1| - 0.091 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 LnmK N-terminal Hot Dog Fold domain Fer4_21 PF14697.6 gi|325968712|ref|YP_004244904.1| - 7.2e-11 42.1 6.8 1.1e-10 41.5 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968712|ref|YP_004244904.1| - 4.1e-09 35.9 16.7 2.5e-05 23.9 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325968712|ref|YP_004244904.1| - 2.2e-06 27.7 7.2 3.5e-06 27.1 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968712|ref|YP_004244904.1| - 1.1e-05 25.9 2.0 0.066 13.8 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968712|ref|YP_004244904.1| - 2.5e-05 24.7 9.6 7.3e-05 23.3 9.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968712|ref|YP_004244904.1| - 0.0003 20.7 13.6 0.061 13.5 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|325968712|ref|YP_004244904.1| - 0.0003 20.8 11.9 0.0039 17.3 12.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325968712|ref|YP_004244904.1| - 0.00032 21.6 9.8 0.077 13.9 2.8 2.4 1 1 2 3 3 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|325968712|ref|YP_004244904.1| - 0.001 19.6 11.9 0.0014 19.1 1.6 2.9 3 0 0 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|325968712|ref|YP_004244904.1| - 0.0026 18.2 10.5 0.22 12.0 1.9 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325968712|ref|YP_004244904.1| - 0.0031 17.5 14.1 0.19 11.9 5.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|325968712|ref|YP_004244904.1| - 0.011 16.5 5.5 0.42 11.4 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|325968712|ref|YP_004244904.1| - 0.02 15.7 1.7 1.7 9.6 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325968712|ref|YP_004244904.1| - 0.21 12.2 9.5 1.2 9.9 1.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|325968712|ref|YP_004244904.1| - 2.5 9.2 15.2 2.1 9.5 5.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|325968713|ref|YP_004244905.1| - 7.4e-51 173.1 0.1 1.1e-50 172.6 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|325968713|ref|YP_004244905.1| - 6.8e-34 116.2 0.1 1.6e-33 115.1 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|325968713|ref|YP_004244905.1| - 5.8e-05 23.0 0.0 0.00023 21.0 0.0 2.0 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|325968713|ref|YP_004244905.1| - 0.0076 15.9 0.1 0.018 14.6 0.1 1.7 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|325968714|ref|YP_004244906.1| - 1.6e-15 57.2 0.5 2.1e-15 56.8 0.5 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|325968714|ref|YP_004244906.1| - 0.01 15.1 0.3 0.017 14.3 0.3 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase DUF4992 PF16383.5 gi|325968714|ref|YP_004244906.1| - 0.08 12.5 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function MFS_1 PF07690.16 gi|325968715|ref|YP_004244907.1| - 2.1e-24 86.1 61.2 1.8e-17 63.3 31.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|325968715|ref|YP_004244907.1| - 3.7 6.3 28.9 0.78 8.5 10.2 3.8 2 1 0 3 3 3 0 MFS_1 like family FAD-oxidase_C PF02913.19 gi|325968716|ref|YP_004244908.1| - 8.6e-64 215.6 0.0 1.2e-63 215.1 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|325968716|ref|YP_004244908.1| - 9.5e-39 132.3 0.6 5.7e-38 129.8 0.6 2.2 1 1 0 1 1 1 1 FAD binding domain PH_17 PF18012.1 gi|325968716|ref|YP_004244908.1| - 0.15 11.8 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 PH domain FAD_binding_4 PF01565.23 gi|325968717|ref|YP_004244909.1| - 7.7e-20 71.1 0.0 1.1e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|325968717|ref|YP_004244909.1| - 3.7e-05 23.5 0.1 0.00014 21.6 0.0 1.9 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain WYL PF13280.6 gi|325968717|ref|YP_004244909.1| - 0.047 13.7 0.0 0.071 13.2 0.0 1.3 1 0 0 1 1 1 0 WYL domain CCG PF02754.16 gi|325968718|ref|YP_004244910.1| - 1e-20 73.7 0.0 2e-09 37.5 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|325968718|ref|YP_004244910.1| - 8.9e-12 45.3 4.2 2.4e-11 43.9 4.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968718|ref|YP_004244910.1| - 1.5e-11 44.7 5.1 3.9e-11 43.4 5.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968718|ref|YP_004244910.1| - 1.5e-11 44.6 3.9 4.2e-11 43.2 3.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968718|ref|YP_004244910.1| - 4.2e-07 30.0 2.3 0.0037 17.3 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325968718|ref|YP_004244910.1| - 3.3e-06 26.7 11.3 0.004 16.9 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|325968718|ref|YP_004244910.1| - 3.5e-05 23.7 11.8 0.015 15.3 1.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968718|ref|YP_004244910.1| - 0.0001 22.4 3.3 0.28 11.4 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968718|ref|YP_004244910.1| - 0.00014 22.0 9.3 0.0052 16.9 10.6 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325968718|ref|YP_004244910.1| - 0.00077 19.8 13.1 0.15 12.6 2.8 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325968718|ref|YP_004244910.1| - 0.003 17.6 15.5 0.037 14.1 2.7 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|325968718|ref|YP_004244910.1| - 0.0042 18.0 9.5 0.019 15.9 9.7 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|325968718|ref|YP_004244910.1| - 0.85 9.8 8.1 6.4 7.0 1.0 2.5 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|325968718|ref|YP_004244910.1| - 1.1 10.1 11.4 3.9 8.4 1.8 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325968718|ref|YP_004244910.1| - 3.5 8.8 17.4 6.3 8.0 4.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Lactate_perm PF02652.14 gi|325968719|ref|YP_004244911.1| - 5.1e-111 372.0 42.0 8e-111 371.3 42.0 1.2 1 0 0 1 1 1 1 L-lactate permease GHMP_kinases_N PF00288.26 gi|325968720|ref|YP_004244912.1| - 1e-15 57.7 1.4 1.9e-15 56.8 1.4 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|325968720|ref|YP_004244912.1| - 3.6e-08 33.6 0.0 1e-07 32.2 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal DAO PF01266.24 gi|325968721|ref|YP_004244913.1| - 3.9e-17 62.9 0.0 5.8e-17 62.3 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|325968721|ref|YP_004244913.1| - 0.0042 16.4 0.1 0.013 14.7 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|325968721|ref|YP_004244913.1| - 0.0048 16.2 0.1 0.0085 15.4 0.0 1.4 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|325968721|ref|YP_004244913.1| - 0.021 15.4 1.6 0.054 14.1 0.6 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325968721|ref|YP_004244913.1| - 0.036 14.3 1.1 0.036 14.3 1.1 1.8 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DEAD PF00270.29 gi|325968722|ref|YP_004244914.1| - 4.3e-27 95.0 0.0 1.2e-26 93.6 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|325968722|ref|YP_004244914.1| - 1.2e-13 51.4 0.2 4.8e-13 49.5 0.2 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|325968722|ref|YP_004244914.1| - 1.3e-09 38.3 0.0 2e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|325968722|ref|YP_004244914.1| - 1.1e-08 35.4 0.0 1.9e-07 31.4 0.0 2.8 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_2 PF12826.7 gi|325968722|ref|YP_004244914.1| - 0.00011 22.2 0.1 0.00058 19.9 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.23 gi|325968722|ref|YP_004244914.1| - 0.00065 18.5 0.1 0.0011 17.7 0.1 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain DNA_pol_lambd_f PF10391.9 gi|325968722|ref|YP_004244914.1| - 0.0014 18.4 0.0 0.0044 16.8 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF818 PF05677.12 gi|325968722|ref|YP_004244914.1| - 0.062 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Chlamydia CHLPS protein (DUF818) NTP_transferase PF00483.23 gi|325968723|ref|YP_004244915.1| - 8.7e-30 104.1 0.0 1e-29 103.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|325968723|ref|YP_004244915.1| - 1.2e-05 25.7 0.0 1.6e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_trans_1_4 PF13692.6 gi|325968724|ref|YP_004244916.1| - 8.8e-15 55.3 0.0 1.5e-14 54.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|325968724|ref|YP_004244916.1| - 3.1e-14 52.9 0.1 7.7e-14 51.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325968724|ref|YP_004244916.1| - 8.1e-07 29.4 0.0 1.3e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325968724|ref|YP_004244916.1| - 0.01 15.8 0.0 0.87 9.6 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Peptidase_M20 PF01546.28 gi|325968725|ref|YP_004244917.1| - 3e-33 115.3 0.0 3.6e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|325968725|ref|YP_004244917.1| - 5.2e-13 48.9 0.0 7.6e-12 45.1 0.0 2.3 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|325968725|ref|YP_004244917.1| - 3.2e-05 23.7 0.0 0.00017 21.4 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|325968725|ref|YP_004244917.1| - 0.0021 17.2 0.0 0.017 14.1 0.0 2.0 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase Ribosomal_L22 PF00237.19 gi|325968726|ref|YP_004244918.1| - 9.4e-24 83.6 0.0 1.3e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Formyl_trans_C PF02911.18 gi|325968726|ref|YP_004244918.1| - 0.042 14.1 0.9 2.1 8.6 0.1 2.4 2 1 0 2 2 2 0 Formyl transferase, C-terminal domain PIN_6 PF17146.4 gi|325968727|ref|YP_004244919.1| - 6.4e-05 23.4 1.3 0.00029 21.3 1.3 1.9 1 1 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|325968727|ref|YP_004244919.1| - 0.055 12.9 0.3 0.12 11.7 0.1 1.6 2 0 0 2 2 2 0 PINc domain ribonuclease NAD_kinase PF01513.21 gi|325968728|ref|YP_004244920.1| - 1.2e-33 116.5 2.9 1.8e-33 116.0 2.9 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|325968728|ref|YP_004244920.1| - 0.0012 18.4 0.1 0.0022 17.6 0.1 1.4 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain eIF-5a PF01287.20 gi|325968729|ref|YP_004244921.1| - 4e-10 39.6 0.1 6.8e-10 38.9 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|325968729|ref|YP_004244921.1| - 1.4e-06 28.2 0.1 3.3e-06 27.0 0.1 1.6 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|325968729|ref|YP_004244921.1| - 0.00019 21.4 0.0 0.00077 19.4 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) OB domain DUF655 PF04919.12 gi|325968730|ref|YP_004244922.1| - 3.6e-59 199.7 0.3 4.2e-59 199.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|325968730|ref|YP_004244922.1| - 1.8e-05 24.9 0.0 9.2e-05 22.6 0.0 2.0 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|325968730|ref|YP_004244922.1| - 0.0036 17.5 0.0 0.0084 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif mIF3 PF14877.6 gi|325968730|ref|YP_004244922.1| - 0.038 13.6 0.0 0.058 13.1 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial translation initiation factor RNA_pol_Rpb4 PF03874.16 gi|325968731|ref|YP_004244923.1| - 6.5e-16 58.8 0.7 9.2e-16 58.3 0.7 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 KorB PF08535.10 gi|325968731|ref|YP_004244923.1| - 0.0047 16.9 0.0 0.008 16.2 0.0 1.4 1 0 0 1 1 1 1 KorB domain Ribosomal_L21e PF01157.18 gi|325968732|ref|YP_004244924.1| - 5.3e-29 100.0 0.3 6e-29 99.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e CSD2 PF17876.1 gi|325968732|ref|YP_004244924.1| - 0.016 15.4 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 Cold shock domain THUMP PF02926.17 gi|325968733|ref|YP_004244925.1| - 5.8e-09 36.2 0.2 1.9e-08 34.5 0.2 1.9 2 0 0 2 2 2 1 THUMP domain DBB PF14545.6 gi|325968733|ref|YP_004244925.1| - 0.15 12.0 0.0 0.34 10.8 0.0 1.6 1 0 0 1 1 1 0 Dof, BCAP, and BANK (DBB) motif, LAGLIDADG_3 PF14528.6 gi|325968734|ref|YP_004244926.1| - 0.018 15.3 0.0 0.04 14.2 0.0 1.6 1 0 0 1 1 1 0 LAGLIDADG-like domain dTDP_sugar_isom PF00908.17 gi|325968735|ref|YP_004244927.1| - 1.1e-67 227.0 0.0 1.2e-67 226.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase HTH_5 PF01022.20 gi|325968736|ref|YP_004244928.1| - 1.4e-05 24.8 0.1 3.8e-05 23.5 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|325968736|ref|YP_004244928.1| - 0.0014 18.2 0.2 0.0039 16.7 0.2 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|325968736|ref|YP_004244928.1| - 0.0024 17.7 0.0 0.0089 15.9 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|325968736|ref|YP_004244928.1| - 0.013 15.1 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain HTH_28 PF13518.6 gi|325968736|ref|YP_004244928.1| - 0.024 14.8 0.8 0.36 11.0 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|325968736|ref|YP_004244928.1| - 0.026 14.3 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|325968736|ref|YP_004244928.1| - 0.047 13.6 0.4 0.5 10.3 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_45 PF14947.6 gi|325968736|ref|YP_004244928.1| - 0.091 12.8 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|325968736|ref|YP_004244928.1| - 0.12 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family UPF0179 PF03684.13 gi|325968736|ref|YP_004244928.1| - 0.14 12.1 0.2 0.25 11.2 0.2 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0179) Robl_LC7 PF03259.17 gi|325968737|ref|YP_004244929.1| - 1.6e-10 40.6 0.3 2.2e-10 40.2 0.3 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|325968737|ref|YP_004244929.1| - 0.00037 20.3 0.6 0.00042 20.1 0.6 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting UPF0047 PF01894.17 gi|325968738|ref|YP_004244930.1| - 3.2e-36 124.0 0.0 4.4e-36 123.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF296 PF03479.15 gi|325968738|ref|YP_004244930.1| - 0.023 15.1 0.0 0.032 14.6 0.0 1.2 1 0 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain DNase-RNase PF02577.14 gi|325968739|ref|YP_004244931.1| - 7.4e-30 103.2 0.4 9.5e-30 102.9 0.4 1.1 1 0 0 1 1 1 1 Bifunctional nuclease tRNA-synt_His PF13393.6 gi|325968740|ref|YP_004244932.1| - 3.2e-65 220.4 0.0 3.9e-65 220.1 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|325968740|ref|YP_004244932.1| - 1.3e-09 38.1 0.0 3.9e-09 36.5 0.0 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|325968740|ref|YP_004244932.1| - 1.7e-06 28.1 0.0 1.1e-05 25.5 0.0 2.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|325968740|ref|YP_004244932.1| - 0.0082 15.7 0.0 0.024 14.1 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|325968740|ref|YP_004244932.1| - 0.081 12.0 0.1 2 7.4 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class II (D, K and N) Peptidase_A24 PF01478.18 gi|325968741|ref|YP_004244933.1| - 3.7e-09 36.9 10.8 3.7e-09 36.9 10.8 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|325968741|ref|YP_004244933.1| - 4.3e-05 23.9 2.1 5.2e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Thiolase_N PF00108.23 gi|325968742|ref|YP_004244934.1| - 0.001 18.5 0.2 0.0023 17.3 0.2 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|325968742|ref|YP_004244934.1| - 0.024 14.3 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|325968743|ref|YP_004244935.1| - 1.2e-09 37.9 0.1 3.4e-08 33.2 0.1 2.3 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|325968743|ref|YP_004244935.1| - 3e-06 26.9 0.0 0.0087 15.7 0.0 2.5 2 0 0 2 2 2 2 Thiolase, C-terminal domain Peptidase_M22 PF00814.25 gi|325968743|ref|YP_004244935.1| - 0.098 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Glycoprotease family PTE PF02126.18 gi|325968744|ref|YP_004244936.1| - 0.0043 16.5 0.0 0.0062 16.0 0.0 1.2 1 0 0 1 1 1 1 Phosphotriesterase family Raf1_HTH PF18579.1 gi|325968744|ref|YP_004244936.1| - 0.19 11.4 0.0 0.53 10.0 0.0 1.7 2 0 0 2 2 2 0 Rubisco accumulation factor 1 helix turn helix domain Hydantoinase_A PF01968.18 gi|325968745|ref|YP_004244937.1| - 8.1e-98 327.3 2.9 2.5e-97 325.7 0.1 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|325968745|ref|YP_004244937.1| - 3.5e-47 160.4 0.0 7e-47 159.4 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|325968745|ref|YP_004244937.1| - 0.0031 17.1 0.1 1.1 8.6 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|325968745|ref|YP_004244937.1| - 0.0054 15.4 0.5 0.58 8.7 0.0 2.9 2 1 1 3 3 3 1 MutL protein SHE3 PF17078.5 gi|325968746|ref|YP_004244938.1| - 0.0078 16.0 8.8 0.01 15.5 7.6 1.9 2 0 0 2 2 2 1 SWI5-dependent HO expression protein 3 DUF1394 PF07159.12 gi|325968746|ref|YP_004244938.1| - 0.0079 15.5 4.0 0.014 14.6 4.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1394) ADIP PF11559.8 gi|325968746|ref|YP_004244938.1| - 0.07 13.2 16.3 0.27 11.3 11.2 2.8 2 1 1 3 3 3 0 Afadin- and alpha -actinin-Binding Peptidase_S46 PF10459.9 gi|325968746|ref|YP_004244938.1| - 0.074 11.7 7.2 0.12 11.1 7.2 1.2 1 0 0 1 1 1 0 Peptidase S46 Snapin_Pallidin PF14712.6 gi|325968746|ref|YP_004244938.1| - 0.085 13.3 10.0 0.69 10.4 1.4 3.4 2 1 2 4 4 4 0 Snapin/Pallidin Tweety PF04906.13 gi|325968746|ref|YP_004244938.1| - 0.12 11.1 0.9 0.2 10.3 0.9 1.3 1 0 0 1 1 1 0 Tweety GlnE PF03710.15 gi|325968746|ref|YP_004244938.1| - 0.18 11.2 4.6 0.47 9.8 0.2 2.6 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase DUF948 PF06103.11 gi|325968746|ref|YP_004244938.1| - 0.2 11.9 1.8 0.85 9.9 0.5 2.5 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) APG6_N PF17675.1 gi|325968746|ref|YP_004244938.1| - 0.2 12.2 32.2 0.28 11.7 18.0 3.8 2 1 2 4 4 4 0 Apg6 coiled-coil region Exonuc_VII_L PF02601.15 gi|325968746|ref|YP_004244938.1| - 0.42 10.1 5.5 0.75 9.3 5.5 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit Atg14 PF10186.9 gi|325968746|ref|YP_004244938.1| - 0.51 9.4 8.4 0.77 8.8 8.4 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FapA PF03961.13 gi|325968746|ref|YP_004244938.1| - 1.1 7.7 6.1 1.8 7.1 6.1 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A TMF_DNA_bd PF12329.8 gi|325968746|ref|YP_004244938.1| - 1.4 9.0 11.9 0.12 12.4 5.1 2.5 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding RE_AlwI PF09491.10 gi|325968746|ref|YP_004244938.1| - 1.6 7.5 12.6 0.89 8.3 10.5 1.6 1 1 0 1 1 1 0 AlwI restriction endonuclease zf-C4H2 PF10146.9 gi|325968746|ref|YP_004244938.1| - 1.6 9.0 11.3 0.23 11.7 7.5 1.5 2 0 0 2 2 2 0 Zinc finger-containing protein Sec34 PF04136.15 gi|325968746|ref|YP_004244938.1| - 1.7 8.5 5.5 1.7 8.5 2.4 2.5 2 1 0 2 2 2 0 Sec34-like family RNA_binding PF01877.17 gi|325968746|ref|YP_004244938.1| - 2.5 8.4 5.5 3.8 7.8 2.9 2.2 2 0 0 2 2 2 0 RNA binding DUF4709 PF15821.5 gi|325968746|ref|YP_004244938.1| - 2.8 8.3 7.5 8.3 6.7 3.5 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4709) Mod_r PF07200.13 gi|325968746|ref|YP_004244938.1| - 2.8 8.0 21.1 0.37 10.9 10.9 3.0 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Fib_alpha PF08702.10 gi|325968746|ref|YP_004244938.1| - 3.2 7.9 6.7 1.7 8.8 4.6 1.7 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family YabA PF06156.13 gi|325968746|ref|YP_004244938.1| - 5.7 7.6 17.0 0.56 10.9 7.3 2.7 2 1 1 3 3 2 0 Initiation control protein YabA HK PF02110.15 gi|325968747|ref|YP_004244939.1| - 9e-85 284.0 1.6 1e-84 283.8 1.6 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|325968747|ref|YP_004244939.1| - 4e-07 29.8 0.5 4.7e-07 29.5 0.5 1.0 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|325968747|ref|YP_004244939.1| - 0.00027 20.4 0.2 0.00036 20.0 0.2 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ADH_zinc_N PF00107.26 gi|325968748|ref|YP_004244940.1| - 2.1e-28 98.9 0.0 3.5e-28 98.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|325968748|ref|YP_004244940.1| - 1.3e-23 83.0 0.0 2.9e-23 81.8 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|325968748|ref|YP_004244940.1| - 1.2e-13 52.2 0.0 2e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|325968748|ref|YP_004244940.1| - 2.3e-07 30.7 0.0 5.7e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Glu_dehyd_C PF16912.5 gi|325968748|ref|YP_004244940.1| - 3.2e-06 26.8 0.2 4.6e-06 26.3 0.2 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|325968748|ref|YP_004244940.1| - 1.9e-05 24.1 1.0 3e-05 23.4 1.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|325968748|ref|YP_004244940.1| - 5.4e-05 22.7 0.9 8.6e-05 22.1 0.5 1.5 1 1 1 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|325968748|ref|YP_004244940.1| - 9.7e-05 22.3 0.3 0.00015 21.7 0.3 1.3 1 0 0 1 1 1 1 NAD(P)H-binding ELFV_dehydrog PF00208.21 gi|325968748|ref|YP_004244940.1| - 0.0019 17.9 0.2 0.0038 17.0 0.1 1.5 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Epimerase PF01370.21 gi|325968748|ref|YP_004244940.1| - 0.0027 17.2 0.1 0.0053 16.2 0.1 1.5 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family LDcluster4 PF18306.1 gi|325968748|ref|YP_004244940.1| - 0.0073 15.9 0.9 0.011 15.3 0.9 1.3 1 0 0 1 1 1 1 SLOG cluster4 family THF_DHG_CYH_C PF02882.19 gi|325968748|ref|YP_004244940.1| - 0.0079 15.5 1.0 0.17 11.2 0.9 2.1 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 2-Hacid_dh_C PF02826.19 gi|325968748|ref|YP_004244940.1| - 0.011 15.1 0.1 0.018 14.4 0.1 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NmrA PF05368.13 gi|325968748|ref|YP_004244940.1| - 0.021 14.4 0.2 0.032 13.8 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family Met_10 PF02475.16 gi|325968748|ref|YP_004244940.1| - 0.027 14.2 0.0 0.058 13.1 0.0 1.7 2 0 0 2 2 2 0 Met-10+ like-protein TrkA_N PF02254.18 gi|325968748|ref|YP_004244940.1| - 0.034 14.4 0.0 0.086 13.1 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain DapB_N PF01113.20 gi|325968748|ref|YP_004244940.1| - 0.047 13.8 0.2 0.092 12.9 0.2 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus CbiJ PF02571.14 gi|325968748|ref|YP_004244940.1| - 0.13 11.7 0.1 0.19 11.1 0.1 1.2 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK CMAS PF02353.20 gi|325968748|ref|YP_004244940.1| - 0.19 11.0 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase E1-N PF14463.6 gi|325968748|ref|YP_004244940.1| - 0.25 11.1 1.3 0.33 10.8 0.3 1.7 2 0 0 2 2 2 0 E1 N-terminal domain POR_N PF01855.19 gi|325968749|ref|YP_004244941.1| - 1.1e-56 192.2 0.0 1.6e-56 191.6 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|325968749|ref|YP_004244941.1| - 9.3e-35 120.3 0.0 2.8e-34 118.7 0.0 1.8 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|325968749|ref|YP_004244941.1| - 2e-10 40.9 0.0 6e-09 36.1 0.0 2.9 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|325968749|ref|YP_004244941.1| - 0.00012 21.8 0.2 0.00027 20.6 0.2 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|325968749|ref|YP_004244941.1| - 0.00014 21.8 0.2 0.00066 19.6 0.0 2.3 2 0 0 2 2 2 1 Transketolase, C-terminal domain Glu_dehyd_C PF16912.5 gi|325968750|ref|YP_004244942.1| - 2.6e-68 229.7 0.2 3.3e-68 229.3 0.2 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|325968750|ref|YP_004244942.1| - 9.4e-14 51.2 0.6 2.1e-13 50.1 0.6 1.6 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|325968750|ref|YP_004244942.1| - 3.6e-10 39.9 0.1 6.7e-10 39.1 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|325968750|ref|YP_004244942.1| - 0.00021 21.4 0.0 0.00045 20.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|325968750|ref|YP_004244942.1| - 0.066 12.5 0.1 0.099 11.9 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain NTP_transf_2 PF01909.23 gi|325968751|ref|YP_004244943.1| - 1.7e-09 37.8 0.0 1.8e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|325968751|ref|YP_004244943.1| - 5.9e-09 35.9 0.0 7.8e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|325968751|ref|YP_004244943.1| - 0.007 16.2 0.0 0.0086 15.9 0.0 1.1 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|325968752|ref|YP_004244944.1| - 2.1e-12 47.2 0.0 2.3e-12 47.1 0.0 1.0 1 0 0 1 1 1 1 HEPN domain MR_MLE_C PF13378.6 gi|325968753|ref|YP_004244945.1| - 2.2e-61 207.2 0.0 5.2e-61 206.0 0.0 1.5 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|325968753|ref|YP_004244945.1| - 1.2e-17 64.2 0.0 8.7e-17 61.4 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FAA_hydrolase PF01557.18 gi|325968754|ref|YP_004244946.1| - 3.4e-25 89.0 0.0 1.7e-24 86.7 0.0 1.8 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Aldedh PF00171.22 gi|325968755|ref|YP_004244947.1| - 5.1e-170 565.9 0.1 5.7e-170 565.8 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|325968755|ref|YP_004244947.1| - 0.028 13.5 0.0 0.062 12.3 0.0 1.8 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) UxuA PF03786.13 gi|325968756|ref|YP_004244948.1| - 3.7e-89 299.0 0.5 7.5e-63 212.5 0.1 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|325968756|ref|YP_004244948.1| - 3.7e-19 69.0 0.0 4.9e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel TubC_N PF18563.1 gi|325968756|ref|YP_004244948.1| - 0.17 11.8 0.3 10 6.2 0.1 2.6 2 0 0 2 2 2 0 TubC N-terminal docking domain Dor1 PF04124.12 gi|325968756|ref|YP_004244948.1| - 0.25 10.0 0.0 0.32 9.6 0.0 1.2 1 0 0 1 1 1 0 Dor1-like family AFOR_C PF01314.18 gi|325968757|ref|YP_004244949.1| - 8.1e-112 374.0 0.0 1.4e-111 373.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|325968757|ref|YP_004244949.1| - 1.6e-68 230.5 0.1 2.3e-68 230.0 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Hormone_3 PF00159.18 gi|325968757|ref|YP_004244949.1| - 0.0065 16.5 0.0 0.012 15.7 0.0 1.4 1 0 0 1 1 1 1 Pancreatic hormone peptide DndE PF08870.11 gi|325968757|ref|YP_004244949.1| - 0.22 11.8 0.0 0.41 10.9 0.0 1.4 1 0 0 1 1 1 0 DNA sulphur modification protein DndE NAD_binding_2 PF03446.15 gi|325968758|ref|YP_004244950.1| - 1.1e-26 93.8 0.0 1.6e-26 93.4 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|325968758|ref|YP_004244950.1| - 1.8e-18 67.0 0.0 2.6e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|325968758|ref|YP_004244950.1| - 8.5e-07 28.5 0.0 1.3e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|325968758|ref|YP_004244950.1| - 1.1e-06 29.1 0.0 1.9e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|325968758|ref|YP_004244950.1| - 0.00028 20.8 0.0 0.00038 20.4 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|325968758|ref|YP_004244950.1| - 0.0047 16.6 0.0 0.0076 15.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|325968758|ref|YP_004244950.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|325968758|ref|YP_004244950.1| - 0.092 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 gi|325968758|ref|YP_004244950.1| - 0.12 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase HTH_10 PF04967.12 gi|325968759|ref|YP_004244951.1| - 9.4e-19 67.0 0.0 1.5e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|325968759|ref|YP_004244951.1| - 0.00066 19.2 0.0 0.0025 17.3 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|325968759|ref|YP_004244951.1| - 0.002 17.6 0.5 0.0044 16.5 0.5 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|325968759|ref|YP_004244951.1| - 0.0026 17.4 0.1 0.036 13.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|325968759|ref|YP_004244951.1| - 0.062 12.9 0.2 0.19 11.3 0.2 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sugar_tr PF00083.24 gi|325968760|ref|YP_004244952.1| - 9.2e-27 94.0 34.1 1.3e-26 93.5 34.1 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325968760|ref|YP_004244952.1| - 1.9e-22 79.7 45.6 1.9e-22 79.7 45.6 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily UPF0139 PF03669.13 gi|325968760|ref|YP_004244952.1| - 0.5 10.3 4.1 2.6 8.0 0.4 2.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0139) DUF697 PF05128.12 gi|325968760|ref|YP_004244952.1| - 0.55 9.9 6.6 2.2 8.0 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF697) T2SSF PF00482.23 gi|325968760|ref|YP_004244952.1| - 0.6 10.1 0.0 0.6 10.1 0.0 3.7 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein F DASH_Ask1 PF08655.10 gi|325968761|ref|YP_004244953.1| - 0.066 13.1 0.2 0.074 13.0 0.2 1.1 1 0 0 1 1 1 0 DASH complex subunit Ask1 GDP_Man_Dehyd PF16363.5 gi|325968762|ref|YP_004244954.1| - 4.9e-38 131.4 0.0 6.2e-38 131.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|325968762|ref|YP_004244954.1| - 7.8e-38 130.3 0.0 9.3e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|325968762|ref|YP_004244954.1| - 2.6e-21 75.8 0.0 4e-21 75.3 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|325968762|ref|YP_004244954.1| - 1.8e-12 47.0 0.0 2.9e-12 46.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|325968762|ref|YP_004244954.1| - 3.2e-11 42.9 0.0 1.6e-09 37.3 0.0 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|325968762|ref|YP_004244954.1| - 4.8e-11 42.9 0.0 7.3e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|325968762|ref|YP_004244954.1| - 2.9e-09 36.4 0.0 4.2e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain adh_short PF00106.25 gi|325968762|ref|YP_004244954.1| - 4.5e-05 23.0 0.0 7.4e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|325968762|ref|YP_004244954.1| - 0.0001 22.0 0.1 0.00014 21.5 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|325968762|ref|YP_004244954.1| - 0.00036 20.5 0.1 0.00087 19.2 0.1 1.7 1 1 0 1 1 1 1 KR domain DUF5010 PF16402.5 gi|325968762|ref|YP_004244954.1| - 0.02 13.7 0.0 0.03 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) TrkA_N PF02254.18 gi|325968762|ref|YP_004244954.1| - 0.11 12.8 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain BPD_transp_2 PF02653.16 gi|325968763|ref|YP_004244955.1| - 3.5e-42 144.4 40.9 4.4e-42 144.1 40.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|325968764|ref|YP_004244956.1| - 3.4e-51 173.3 0.0 9.9e-28 97.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|325968764|ref|YP_004244956.1| - 2.2e-10 40.8 3.0 0.00034 20.5 0.1 3.4 3 1 0 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|325968764|ref|YP_004244956.1| - 0.00024 20.8 0.3 0.013 15.2 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|325968764|ref|YP_004244956.1| - 0.0012 18.8 0.0 0.051 13.5 0.0 2.6 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 gi|325968764|ref|YP_004244956.1| - 0.0043 16.5 0.1 0.84 9.0 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|325968764|ref|YP_004244956.1| - 0.0045 17.5 0.2 0.92 10.1 0.1 2.9 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|325968764|ref|YP_004244956.1| - 0.014 15.5 2.6 1.2 9.2 0.1 3.3 2 2 0 2 2 2 0 50S ribosome-binding GTPase TsaE PF02367.17 gi|325968764|ref|YP_004244956.1| - 0.019 14.9 0.3 3.2 7.8 0.1 2.8 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP-synt_F PF01990.17 gi|325968764|ref|YP_004244956.1| - 0.027 14.8 2.4 10 6.5 0.0 3.9 4 0 0 4 4 4 0 ATP synthase (F/14-kDa) subunit AAA_30 PF13604.6 gi|325968764|ref|YP_004244956.1| - 0.054 13.2 0.3 2.8 7.6 0.0 3.2 4 0 0 4 4 4 0 AAA domain AAA_22 PF13401.6 gi|325968764|ref|YP_004244956.1| - 0.076 13.3 4.2 27 5.0 0.1 4.0 4 0 0 4 4 4 0 AAA domain AAA_23 PF13476.6 gi|325968764|ref|YP_004244956.1| - 0.084 13.4 4.2 0.05 14.1 1.1 2.5 3 1 0 3 3 3 0 AAA domain Sec-ASP3 PF15432.6 gi|325968764|ref|YP_004244956.1| - 0.1 12.8 0.0 9.2 6.4 0.0 2.6 2 0 0 2 2 2 0 Accessory Sec secretory system ASP3 AAA_16 PF13191.6 gi|325968764|ref|YP_004244956.1| - 0.12 12.8 0.1 1.5 9.2 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|325968764|ref|YP_004244956.1| - 0.95 9.6 2.7 37 4.5 0.1 3.4 3 1 0 3 3 3 0 AAA domain Peripla_BP_4 PF13407.6 gi|325968765|ref|YP_004244957.1| - 1.4e-34 119.8 2.6 1.8e-34 119.5 2.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain SBP_bac_8 PF13416.6 gi|325968766|ref|YP_004244958.1| - 4.6e-22 79.1 0.0 5.9e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|325968766|ref|YP_004244958.1| - 1.2e-12 48.4 0.0 1.7e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein GFO_IDH_MocA PF01408.22 gi|325968767|ref|YP_004244959.1| - 3.9e-24 85.8 0.2 1.3e-23 84.1 0.2 1.9 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|325968767|ref|YP_004244959.1| - 0.00012 22.6 0.1 0.00027 21.5 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|325968767|ref|YP_004244959.1| - 0.0051 16.9 0.1 0.01 15.9 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase KGG PF10685.9 gi|325968767|ref|YP_004244959.1| - 0.011 16.0 0.1 0.024 14.9 0.1 1.6 1 0 0 1 1 1 0 Stress-induced bacterial acidophilic repeat motif GFO_IDH_MocA_C PF02894.17 gi|325968767|ref|YP_004244959.1| - 0.046 13.7 0.0 0.081 12.9 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Cys_Met_Meta_PP PF01053.20 gi|325968767|ref|YP_004244959.1| - 0.11 10.9 0.1 0.18 10.3 0.1 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DXP_reductoisom PF02670.16 gi|325968767|ref|YP_004244959.1| - 0.15 12.8 0.0 0.3 11.8 0.0 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase MoCF_biosynth PF00994.24 gi|325968768|ref|YP_004244960.1| - 2.9e-18 65.9 0.1 5.5e-18 65.0 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain ANF_receptor PF01094.28 gi|325968768|ref|YP_004244960.1| - 0.04 13.0 0.0 0.061 12.4 0.0 1.2 1 0 0 1 1 1 0 Receptor family ligand binding region DUF3391 PF11871.8 gi|325968768|ref|YP_004244960.1| - 0.19 12.2 0.0 0.33 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) NAD_binding_2 PF03446.15 gi|325968769|ref|YP_004244961.1| - 1.3e-46 158.7 0.5 2.2e-46 157.9 0.1 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|325968769|ref|YP_004244961.1| - 3.5e-35 120.9 0.9 4.9e-35 120.4 0.9 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|325968769|ref|YP_004244961.1| - 0.0053 16.1 0.0 0.012 15.0 0.0 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|325968769|ref|YP_004244961.1| - 0.1 12.8 0.1 0.36 11.1 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain GD_AH_C PF04295.13 gi|325968770|ref|YP_004244962.1| - 1.7e-151 504.5 0.5 1.9e-151 504.4 0.5 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 gi|325968771|ref|YP_004244963.1| - 4.5e-20 72.0 0.3 5.8e-20 71.7 0.3 1.1 1 0 0 1 1 1 1 SAF domain SET PF00856.28 gi|325968771|ref|YP_004244963.1| - 0.026 14.9 0.0 1.6 9.1 0.0 2.1 1 1 1 2 2 2 0 SET domain DUF2190 PF09956.9 gi|325968771|ref|YP_004244963.1| - 0.084 13.4 0.1 8.5 6.9 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2190) SBP_bac_1 PF01547.25 gi|325968772|ref|YP_004244964.1| - 2.4e-10 40.9 5.8 4.5e-10 40.0 5.8 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|325968773|ref|YP_004244965.1| - 4.7e-11 42.7 28.6 4.7e-11 42.7 28.6 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|325968774|ref|YP_004244966.1| - 1.7e-17 63.8 21.8 1.7e-17 63.8 21.8 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|325968775|ref|YP_004244967.1| - 1.1e-32 113.4 0.0 2.4e-32 112.3 0.0 1.6 2 0 0 2 2 1 1 ABC transporter GlcV_C_terminal PF17847.1 gi|325968775|ref|YP_004244967.1| - 1.4e-22 79.9 1.9 2.1e-22 79.3 0.6 1.9 2 0 0 2 2 2 1 Glucose ABC transporter C-terminal domain AAA_21 PF13304.6 gi|325968775|ref|YP_004244967.1| - 3.1e-07 30.5 0.0 0.00076 19.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968775|ref|YP_004244967.1| - 0.0024 17.4 0.0 0.019 14.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|325968775|ref|YP_004244967.1| - 0.015 15.7 0.0 1.7 9.0 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|325968775|ref|YP_004244967.1| - 0.018 15.3 0.2 0.072 13.3 0.2 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit OB_MalK PF17912.1 gi|325968775|ref|YP_004244967.1| - 0.072 13.9 0.1 0.21 12.4 0.1 1.9 1 0 0 1 1 1 0 MalK OB fold domain AAA_16 PF13191.6 gi|325968775|ref|YP_004244967.1| - 0.074 13.4 0.1 0.53 10.6 0.0 2.2 2 1 1 3 3 3 0 AAA ATPase domain CysA_C_terminal PF17850.1 gi|325968775|ref|YP_004244967.1| - 0.083 13.5 0.0 0.24 12.0 0.0 1.9 2 0 0 2 2 1 0 CysA C-terminal regulatory domain AAA_29 PF13555.6 gi|325968775|ref|YP_004244967.1| - 0.091 12.5 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|325968775|ref|YP_004244967.1| - 0.1 12.8 0.0 0.35 11.1 0.0 1.9 1 1 1 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|325968775|ref|YP_004244967.1| - 0.13 12.1 0.1 0.54 10.1 0.1 2.2 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|325968775|ref|YP_004244967.1| - 0.18 12.0 1.2 2.8 8.2 1.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|325968775|ref|YP_004244967.1| - 0.19 12.2 0.3 0.41 11.1 0.3 1.5 1 0 0 1 1 1 0 AAA domain DUF309 PF03745.14 gi|325968776|ref|YP_004244968.1| - 2.2e-16 59.3 0.7 3.7e-16 58.6 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Creatininase PF02633.14 gi|325968777|ref|YP_004244969.1| - 8.6e-46 156.4 0.0 9.5e-46 156.2 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DeoC PF01791.9 gi|325968778|ref|YP_004244970.1| - 3e-40 138.3 0.0 3.5e-40 138.1 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PFK PF00365.20 gi|325968779|ref|YP_004244971.1| - 3.9e-90 302.0 0.1 4.5e-90 301.8 0.1 1.0 1 0 0 1 1 1 1 Phosphofructokinase Glyco_transf_4 PF13439.6 gi|325968779|ref|YP_004244971.1| - 0.0013 18.8 0.0 1.5 8.8 0.0 2.7 2 1 0 2 2 2 2 Glycosyltransferase Family 4 DAGK_cat PF00781.24 gi|325968779|ref|YP_004244971.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.21 gi|325968779|ref|YP_004244971.1| - 0.034 13.3 0.2 0.048 12.8 0.2 1.2 1 0 0 1 1 1 0 ATP-NAD kinase Bmp PF02608.14 gi|325968779|ref|YP_004244971.1| - 0.15 11.0 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like Glyco_hydro_15 PF00723.21 gi|325968780|ref|YP_004244972.1| - 5.8e-19 68.2 0.3 3.7e-11 42.5 0.2 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 Bac_rhamnosid6H PF17389.2 gi|325968780|ref|YP_004244972.1| - 0.00022 20.6 0.4 0.00048 19.5 0.4 1.5 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF608 PF04685.13 gi|325968780|ref|YP_004244972.1| - 0.00035 19.9 0.6 0.00055 19.2 0.6 1.2 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydro_36 PF17167.4 gi|325968780|ref|YP_004244972.1| - 0.041 12.6 0.2 0.077 11.7 0.2 1.5 1 1 0 1 1 1 0 Glycosyl hydrolase 36 superfamily, catalytic domain TPR_12 PF13424.6 gi|325968780|ref|YP_004244972.1| - 0.19 12.0 0.6 3 8.2 0.2 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat tRNA-synt_1e PF01406.19 gi|325968781|ref|YP_004244973.1| - 6.5e-113 377.1 0.0 1e-112 376.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|325968781|ref|YP_004244973.1| - 1.4e-10 40.5 0.1 1.7e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|325968781|ref|YP_004244973.1| - 1.6e-09 36.6 0.1 6.9e-08 31.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|325968781|ref|YP_004244973.1| - 3.7e-09 36.0 0.1 3e-05 23.1 0.1 2.5 2 1 1 3 3 3 2 tRNA synthetases class I (K) DALR_2 PF09190.11 gi|325968781|ref|YP_004244973.1| - 1.3e-07 32.0 1.0 5.1e-07 30.1 0.5 2.1 2 0 0 2 2 2 1 DALR domain Cir_Bir_Yir PF06022.11 gi|325968781|ref|YP_004244973.1| - 0.0017 17.9 0.2 0.0028 17.2 0.2 1.3 1 0 0 1 1 1 1 Plasmodium variant antigen protein Cir/Yir/Bir Helicase_C_3 PF13625.6 gi|325968781|ref|YP_004244973.1| - 0.071 13.3 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Helicase conserved C-terminal domain SOG2 PF10428.9 gi|325968781|ref|YP_004244973.1| - 0.15 11.2 0.1 0.59 9.3 0.1 1.9 1 1 0 1 1 1 0 RAM signalling pathway protein Ribosomal_S19e PF01090.19 gi|325968782|ref|YP_004244974.1| - 0.0025 17.5 0.0 0.0049 16.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S19e TrmB PF01978.19 gi|325968782|ref|YP_004244974.1| - 0.0063 16.4 0.1 0.015 15.2 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|325968782|ref|YP_004244974.1| - 0.1 12.6 0.1 0.53 10.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix ATP-synt_ab PF00006.25 gi|325968783|ref|YP_004244975.1| - 4.4e-79 265.0 0.0 5.8e-79 264.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|325968783|ref|YP_004244975.1| - 4.4e-41 139.5 0.0 7.1e-41 138.9 0.0 1.3 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|325968783|ref|YP_004244975.1| - 1.2e-11 44.9 0.6 3.8e-11 43.3 0.6 1.9 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|325968783|ref|YP_004244975.1| - 0.021 15.1 0.0 0.088 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain vATP-synt_E PF01991.18 gi|325968784|ref|YP_004244976.1| - 1.3e-13 50.8 9.3 2.7e-13 49.8 9.3 1.5 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HK97-gp10_like PF04883.12 gi|325968784|ref|YP_004244976.1| - 0.0016 19.3 0.1 0.0034 18.3 0.1 1.6 1 0 0 1 1 1 1 Bacteriophage HK97-gp10, putative tail-component AcylCoA_dehyd_C PF12186.8 gi|325968784|ref|YP_004244976.1| - 0.015 15.4 0.8 0.14 12.3 0.4 2.2 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase C terminal pRN1_helical PF13010.6 gi|325968784|ref|YP_004244976.1| - 0.017 15.1 0.9 0.025 14.5 0.9 1.4 1 0 0 1 1 1 0 Primase helical domain RGS PF00615.19 gi|325968784|ref|YP_004244976.1| - 0.028 14.7 0.6 0.048 13.9 0.6 1.3 1 0 0 1 1 1 0 Regulator of G protein signaling domain Pertus-S5-tox PF09276.10 gi|325968784|ref|YP_004244976.1| - 0.047 13.8 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Pertussis toxin S5 subunit DUF5054 PF16477.5 gi|325968784|ref|YP_004244976.1| - 0.085 12.6 1.9 0.14 11.9 1.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5054) KH_5 PF13184.6 gi|325968784|ref|YP_004244976.1| - 0.2 11.8 1.1 2.2 8.4 0.2 2.8 2 1 0 2 2 2 0 NusA-like KH domain DUF3924 PF13062.6 gi|325968784|ref|YP_004244976.1| - 0.95 9.5 3.1 1.9 8.5 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3924) UPF0086 PF01868.16 gi|325968785|ref|YP_004244977.1| - 8.2e-12 44.9 0.2 9.4e-12 44.7 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|325968786|ref|YP_004244978.1| - 4.5e-15 55.4 2.4 5.8e-15 55.0 2.4 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein DnaB_bind PF10410.9 gi|325968786|ref|YP_004244978.1| - 0.072 13.3 1.4 1.2 9.4 0.4 2.1 1 1 1 2 2 2 0 DnaB-helicase binding domain of primase Ribosomal_S3_C PF00189.20 gi|325968787|ref|YP_004244979.1| - 5.6e-20 71.7 1.2 1e-19 70.8 1.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|325968787|ref|YP_004244979.1| - 5.2e-08 32.6 0.1 1.7e-07 31.0 0.1 2.0 2 0 0 2 2 2 1 KH domain OB_aCoA_assoc PF01796.17 gi|325968788|ref|YP_004244980.1| - 3.5e-11 42.9 0.5 4.7e-11 42.5 0.5 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|325968788|ref|YP_004244980.1| - 1.8e-05 24.5 0.1 2.5e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|325968788|ref|YP_004244980.1| - 0.13 12.3 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon Rad50_zn_hook PF04423.14 gi|325968788|ref|YP_004244980.1| - 0.2 11.5 0.1 0.35 10.7 0.1 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C6H2 PF15801.5 gi|325968788|ref|YP_004244980.1| - 0.22 11.9 0.2 0.33 11.3 0.2 1.2 1 0 0 1 1 1 0 zf-MYND-like zinc finger, mRNA-binding OB_aCoA_assoc PF01796.17 gi|325968789|ref|YP_004244981.1| - 8.7e-15 54.5 0.2 1.2e-14 54.0 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|325968789|ref|YP_004244981.1| - 3.2e-11 42.9 0.8 6.7e-11 41.8 0.5 1.7 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|325968789|ref|YP_004244981.1| - 0.011 15.7 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|325968789|ref|YP_004244981.1| - 0.027 15.2 0.2 0.038 14.7 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|325968789|ref|YP_004244981.1| - 0.51 9.8 6.7 3.6 7.1 6.8 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|325968791|ref|YP_004244983.1| - 2.7e-11 43.3 6.6 0.044 14.6 0.0 4.1 4 0 0 4 4 4 3 C2H2-type zinc finger zf-Di19 PF05605.12 gi|325968791|ref|YP_004244983.1| - 1.3e-10 41.4 5.0 1.9e-06 28.0 0.2 3.1 2 1 1 3 3 3 2 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|325968791|ref|YP_004244983.1| - 5.7e-09 36.0 7.5 0.097 13.2 0.2 4.2 4 0 0 4 4 4 3 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|325968791|ref|YP_004244983.1| - 2.2e-07 31.0 8.4 0.29 11.6 0.1 4.5 4 0 0 4 4 4 2 Zinc-finger double domain zf-C2H2_2 PF12756.7 gi|325968791|ref|YP_004244983.1| - 3.1e-06 27.4 3.4 0.021 15.1 0.1 3.2 1 1 3 4 4 4 2 C2H2 type zinc-finger (2 copies) DZR PF12773.7 gi|325968791|ref|YP_004244983.1| - 5.3e-06 26.4 2.7 0.043 13.9 0.0 2.9 2 1 0 2 2 2 2 Double zinc ribbon zf-C2H2_jaz PF12171.8 gi|325968791|ref|YP_004244983.1| - 7.6e-06 26.1 4.7 0.24 11.7 0.1 4.1 4 0 0 4 4 4 2 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 gi|325968791|ref|YP_004244983.1| - 1.9e-05 24.9 6.6 0.013 15.9 0.0 3.6 4 0 0 4 4 3 2 Zinc-finger of C2H2 type zf-BED PF02892.15 gi|325968791|ref|YP_004244983.1| - 3e-05 23.9 7.6 1.1 9.4 0.1 4.0 4 0 0 4 4 4 3 BED zinc finger Sgf11 PF08209.11 gi|325968791|ref|YP_004244983.1| - 4.7e-05 22.9 6.8 0.0021 17.6 0.0 4.0 4 0 0 4 4 4 1 Sgf11 (transcriptional regulation protein) zinc_ribbon_15 PF17032.5 gi|325968791|ref|YP_004244983.1| - 4.8e-05 24.0 0.9 0.02 15.6 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon family Zn-ribbon_8 PF09723.10 gi|325968791|ref|YP_004244983.1| - 0.00087 19.4 6.9 0.075 13.2 0.3 3.7 3 1 1 4 4 4 1 Zinc ribbon domain zf_UBZ PF18439.1 gi|325968791|ref|YP_004244983.1| - 0.0015 18.1 4.4 0.57 9.8 0.0 3.7 4 0 0 4 4 4 1 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|325968791|ref|YP_004244983.1| - 0.0044 17.0 2.7 5.2 7.1 0.0 3.6 3 1 0 3 3 3 0 CpXC protein Jas PF16135.5 gi|325968791|ref|YP_004244983.1| - 0.0046 17.1 1.9 0.18 12.0 0.1 2.3 1 1 1 2 2 2 1 TPL-binding domain in jasmonate signalling zinc_ribbon_2 PF13240.6 gi|325968791|ref|YP_004244983.1| - 0.0064 16.2 12.0 0.017 14.8 0.5 3.8 4 0 0 4 4 4 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|325968791|ref|YP_004244983.1| - 0.0068 16.3 3.7 0.31 11.0 0.1 3.1 2 2 1 3 3 3 1 Putative transposase DNA-binding domain zf-nanos PF05741.13 gi|325968791|ref|YP_004244983.1| - 0.009 16.2 4.5 11 6.3 0.0 4.0 4 0 0 4 4 4 0 Nanos RNA binding domain zf-Sec23_Sec24 PF04810.15 gi|325968791|ref|YP_004244983.1| - 0.011 15.7 2.6 0.82 9.8 0.6 3.3 3 1 0 3 3 3 0 Sec23/Sec24 zinc finger Desulfoferrod_N PF06397.12 gi|325968791|ref|YP_004244983.1| - 0.011 15.3 6.4 0.28 10.8 0.5 3.4 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-CpG_bind_C PF12269.8 gi|325968791|ref|YP_004244983.1| - 0.014 15.2 3.9 3.7 7.2 0.1 2.9 1 1 1 3 3 3 0 CpG binding protein zinc finger C terminal domain DUF1815 PF08844.10 gi|325968791|ref|YP_004244983.1| - 0.014 15.3 1.0 8 6.5 0.0 3.3 1 1 3 4 4 4 0 Domain of unknown function (DUF1815) zinc-ribbons_6 PF07191.12 gi|325968791|ref|YP_004244983.1| - 0.015 15.3 4.1 0.24 11.4 2.1 2.9 2 1 0 2 2 2 0 zinc-ribbons Elf1 PF05129.13 gi|325968791|ref|YP_004244983.1| - 0.016 15.3 6.1 0.2 11.7 0.7 3.0 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like Prok-RING_1 PF14446.6 gi|325968791|ref|YP_004244983.1| - 0.026 14.4 7.3 35 4.4 0.2 4.0 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 PRP21_like_P PF12230.8 gi|325968791|ref|YP_004244983.1| - 0.03 14.2 0.0 0.05 13.5 0.0 1.5 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein zf-ribbon_3 PF13248.6 gi|325968791|ref|YP_004244983.1| - 0.039 13.4 9.6 0.4 10.2 0.3 3.9 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|325968791|ref|YP_004244983.1| - 0.039 14.2 2.4 26 5.2 0.0 3.7 4 0 0 4 4 4 0 zinc-ribbon Zn_ribbon_SprT PF17283.2 gi|325968791|ref|YP_004244983.1| - 0.055 13.4 7.3 1.2 9.2 0.0 3.8 3 1 0 3 3 3 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|325968791|ref|YP_004244983.1| - 0.082 12.9 4.1 2.9 7.9 4.0 2.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|325968791|ref|YP_004244983.1| - 0.1 12.1 9.5 2.4 7.8 0.1 4.0 4 0 0 4 4 4 0 TFIIB zinc-binding zf-CHY PF05495.12 gi|325968791|ref|YP_004244983.1| - 0.14 12.7 2.1 4 8.0 1.4 2.6 1 1 1 2 2 2 0 CHY zinc finger zf-RING_7 PF02591.15 gi|325968791|ref|YP_004244983.1| - 0.16 12.2 4.3 8 6.7 0.0 3.5 4 0 0 4 4 3 0 C4-type zinc ribbon domain zf-UBP PF02148.19 gi|325968791|ref|YP_004244983.1| - 0.24 11.7 2.7 2.3 8.6 2.0 2.4 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-C2H2_9 PF16293.5 gi|325968791|ref|YP_004244983.1| - 0.29 11.0 2.5 55 3.7 0.0 3.6 4 0 0 4 4 4 0 C2H2 type zinc-finger (1 copy) zf_C2H2_13 PF18508.1 gi|325968791|ref|YP_004244983.1| - 0.37 10.4 3.5 0.94 9.1 0.1 2.8 3 0 0 3 3 3 0 Zinc finger domain zinc_ribbon_4 PF13717.6 gi|325968791|ref|YP_004244983.1| - 0.38 10.7 6.6 2.9 7.9 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|325968791|ref|YP_004244983.1| - 0.39 10.6 7.6 2.4 8.0 0.4 3.8 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.6 gi|325968791|ref|YP_004244983.1| - 0.39 10.7 5.6 5.6 7.0 0.1 3.3 3 0 0 3 3 3 0 YhfH-like protein zf-trcl PF13451.6 gi|325968791|ref|YP_004244983.1| - 0.5 10.3 5.4 35 4.4 0.1 3.3 3 0 0 3 3 3 0 Probable zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|325968791|ref|YP_004244983.1| - 0.52 10.3 7.4 4.1 7.5 1.7 3.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2321 PF10083.9 gi|325968791|ref|YP_004244983.1| - 0.66 9.6 3.7 1.2 8.7 0.4 2.2 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2321) Actin_micro PF17003.5 gi|325968791|ref|YP_004244983.1| - 0.74 8.9 5.2 7.8 5.6 0.3 3.0 1 1 2 3 3 3 0 Putative actin-like family Vps36-NZF-N PF16988.5 gi|325968791|ref|YP_004244983.1| - 1 8.8 7.2 1.2 8.5 0.5 2.9 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-ACC PF17848.1 gi|325968791|ref|YP_004244983.1| - 1.1 9.4 0.1 1.1 9.4 0.1 3.3 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain C1_2 PF03107.16 gi|325968791|ref|YP_004244983.1| - 1.7 9.0 6.6 22 5.5 0.1 3.6 3 1 1 4 4 4 0 C1 domain PhnA_Zn_Ribbon PF08274.12 gi|325968791|ref|YP_004244983.1| - 1.9 8.5 8.5 1.6 8.8 1.1 3.3 3 1 0 3 3 3 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.6 gi|325968791|ref|YP_004244983.1| - 2.1 8.8 10.4 2 8.8 5.0 3.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|325968791|ref|YP_004244983.1| - 2.5 7.5 8.3 17 4.8 0.1 3.1 3 1 0 3 3 3 0 Transcription factor zinc-finger HNH PF01844.23 gi|325968791|ref|YP_004244983.1| - 4.8 7.4 8.0 25 5.2 0.1 3.4 4 0 0 4 4 3 0 HNH endonuclease Zn_ribbon_recom PF13408.6 gi|325968791|ref|YP_004244983.1| - 4.9 7.7 10.7 21 5.7 1.7 3.5 2 1 2 4 4 4 0 Recombinase zinc beta ribbon domain TFIIS_C PF01096.18 gi|325968791|ref|YP_004244983.1| - 5 7.1 6.6 16 5.4 0.1 3.5 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.17 gi|325968791|ref|YP_004244983.1| - 8 6.3 8.2 24 4.7 0.1 3.5 4 0 0 4 4 4 0 Ribosomal protein S27 CarS-like PF01864.17 gi|325968792|ref|YP_004244984.1| - 4.4e-44 150.5 3.0 5.3e-44 150.3 3.0 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|325968792|ref|YP_004244984.1| - 6.9e-06 26.0 1.2 6.9e-06 26.0 1.2 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family PRA1 PF03208.19 gi|325968792|ref|YP_004244984.1| - 0.15 11.7 4.6 0.28 10.8 4.6 1.4 1 0 0 1 1 1 0 PRA1 family protein DUF92 PF01940.16 gi|325968792|ref|YP_004244984.1| - 0.43 9.9 3.3 0.15 11.4 0.4 1.6 2 0 0 2 2 2 0 Integral membrane protein DUF92 ATP-synt_F PF01990.17 gi|325968793|ref|YP_004244985.1| - 7.5e-16 58.2 0.0 8.6e-16 58.0 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit UPF0086 PF01868.16 gi|325968793|ref|YP_004244985.1| - 0.079 12.9 0.0 0.091 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function UPF0086 UbiA PF01040.18 gi|325968794|ref|YP_004244986.1| - 4.5e-25 88.4 27.4 5e-25 88.2 26.7 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Glu_synthase PF01645.17 gi|325968795|ref|YP_004244987.1| - 6.5e-22 78.2 11.2 6.6e-20 71.6 8.5 3.6 1 1 1 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|325968795|ref|YP_004244987.1| - 7.6e-20 71.2 5.5 1.2e-14 54.1 2.6 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|325968795|ref|YP_004244987.1| - 4.1e-06 26.4 1.5 7e-06 25.7 1.5 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase AMP-binding PF00501.28 gi|325968796|ref|YP_004244988.1| - 2e-70 237.5 0.0 2.4e-70 237.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325968796|ref|YP_004244988.1| - 1.6e-16 61.1 2.3 4.8e-16 59.5 0.7 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|325968796|ref|YP_004244988.1| - 1.5e-13 50.5 0.1 2.9e-13 49.5 0.1 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding PF00501.28 gi|325968797|ref|YP_004244989.1| - 4.8e-79 265.9 0.0 6e-79 265.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325968797|ref|YP_004244989.1| - 2.3e-12 47.7 0.0 4.2e-12 46.9 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACP_syn_III_C PF08541.10 gi|325968797|ref|YP_004244989.1| - 0.029 14.5 0.0 0.079 13.1 0.0 1.7 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PBP_like PF12727.7 gi|325968798|ref|YP_004244990.1| - 1.5e-62 210.2 0.0 2.8e-62 209.3 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|325968798|ref|YP_004244990.1| - 2.5e-44 150.8 0.3 4e-44 150.1 0.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|325968798|ref|YP_004244990.1| - 9.8e-26 90.1 0.1 1.9e-25 89.2 0.1 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|325968798|ref|YP_004244990.1| - 4.1e-16 58.9 0.1 3e-15 56.2 0.0 2.4 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|325968798|ref|YP_004244990.1| - 3.9e-07 30.0 0.0 6.9e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|325968798|ref|YP_004244990.1| - 0.0013 18.4 0.0 0.0025 17.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein IF2_N PF04760.15 gi|325968798|ref|YP_004244990.1| - 0.13 12.1 0.1 0.38 10.6 0.1 1.8 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region SBP_bac_3 PF00497.20 gi|325968798|ref|YP_004244990.1| - 0.15 11.4 0.1 0.33 10.3 0.1 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 VKOR PF07884.14 gi|325968799|ref|YP_004244991.1| - 9.9e-25 87.1 12.4 1.2e-24 86.9 12.4 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family HAD PF12710.7 gi|325968800|ref|YP_004244992.1| - 2.9e-06 27.8 0.0 4.3e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|325968800|ref|YP_004244992.1| - 5.6e-06 26.6 0.0 3.2e-05 24.1 0.0 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|325968800|ref|YP_004244992.1| - 0.00032 21.1 0.0 0.0063 16.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|325968800|ref|YP_004244992.1| - 0.0051 16.9 0.5 0.023 14.8 0.5 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF4363 PF14276.6 gi|325968801|ref|YP_004244993.1| - 0.013 15.6 1.2 0.032 14.3 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4363) DUF3347 PF11827.8 gi|325968801|ref|YP_004244993.1| - 0.056 13.6 0.2 0.096 12.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) CSTF2_hinge PF14327.6 gi|325968801|ref|YP_004244993.1| - 0.16 12.5 0.3 0.16 12.5 0.3 2.3 2 1 0 2 2 2 0 Hinge domain of cleavage stimulation factor subunit 2 DUF4175 PF13779.6 gi|325968801|ref|YP_004244993.1| - 0.61 7.9 12.5 0.75 7.6 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4175) HTH_24 PF13412.6 gi|325968802|ref|YP_004244994.1| - 1.2e-07 31.2 0.0 2.2e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|325968802|ref|YP_004244994.1| - 2.5e-06 27.3 0.0 7.9e-06 25.7 0.0 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|325968802|ref|YP_004244994.1| - 1.3e-05 25.0 0.0 2.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|325968802|ref|YP_004244994.1| - 6.6e-05 22.8 0.0 0.00022 21.1 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|325968802|ref|YP_004244994.1| - 0.0029 17.6 0.0 0.0045 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|325968802|ref|YP_004244994.1| - 0.0032 17.6 0.0 0.0087 16.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|325968802|ref|YP_004244994.1| - 0.0048 17.4 0.2 0.018 15.5 0.0 2.1 2 1 0 2 2 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|325968802|ref|YP_004244994.1| - 0.0072 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain RNA_pol_Rpc34 PF05158.12 gi|325968802|ref|YP_004244994.1| - 0.016 14.6 0.3 0.026 13.9 0.0 1.4 2 0 0 2 2 2 0 RNA polymerase Rpc34 subunit TMEM154 PF15102.6 gi|325968802|ref|YP_004244994.1| - 0.026 14.5 2.6 0.046 13.6 2.6 1.3 1 0 0 1 1 1 0 TMEM154 protein family HTH_36 PF13730.6 gi|325968802|ref|YP_004244994.1| - 0.037 14.0 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|325968802|ref|YP_004244994.1| - 0.045 13.6 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|325968802|ref|YP_004244994.1| - 0.053 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_micro PF17007.5 gi|325968802|ref|YP_004244994.1| - 0.071 11.9 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 HTH-like HTH_1 PF00126.27 gi|325968802|ref|YP_004244994.1| - 0.15 12.0 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Viral_Beta_CD PF04530.12 gi|325968802|ref|YP_004244994.1| - 0.41 10.9 4.0 1.2 9.5 4.0 1.8 1 1 0 1 1 1 0 Viral Beta C/D like family GCH_III PF05165.12 gi|325968803|ref|YP_004244995.1| - 4.9e-40 137.3 0.0 1.8e-39 135.5 0.0 1.7 1 1 0 1 1 1 1 GTP cyclohydrolase III HAD_2 PF13419.6 gi|325968804|ref|YP_004244996.1| - 3.2e-14 53.4 0.0 1.7e-13 51.1 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|325968804|ref|YP_004244996.1| - 5.1e-07 30.2 0.0 1.4e-06 28.7 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|325968804|ref|YP_004244996.1| - 0.077 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 HAD-hyrolase-like CxxCxxCC PF03692.15 gi|325968805|ref|YP_004244997.1| - 2.9e-08 34.3 0.0 6e-08 33.3 0.0 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ABC_tran PF00005.27 gi|325968806|ref|YP_004244998.1| - 2.1e-31 109.3 0.0 3.3e-31 108.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter DUF4162 PF13732.6 gi|325968806|ref|YP_004244998.1| - 5.1e-14 52.8 0.1 1.1e-13 51.7 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_21 PF13304.6 gi|325968806|ref|YP_004244998.1| - 1.1e-10 41.9 0.1 1e-06 28.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|325968806|ref|YP_004244998.1| - 0.00073 20.1 0.1 0.0015 19.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|325968806|ref|YP_004244998.1| - 0.012 15.4 0.0 2.1 7.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|325968806|ref|YP_004244998.1| - 0.038 13.6 0.1 0.096 12.3 0.1 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|325968806|ref|YP_004244998.1| - 0.042 14.3 0.1 0.32 11.4 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|325968806|ref|YP_004244998.1| - 0.065 12.8 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|325968806|ref|YP_004244998.1| - 0.079 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|325968806|ref|YP_004244998.1| - 0.1 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|325968806|ref|YP_004244998.1| - 0.11 12.0 0.0 5.1 6.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane PF01061.24 gi|325968807|ref|YP_004244999.1| - 1.6e-33 115.9 20.6 1.6e-33 115.9 20.6 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|325968807|ref|YP_004244999.1| - 1.8e-15 56.9 21.6 1.8e-15 56.9 21.6 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|325968807|ref|YP_004244999.1| - 0.00049 20.1 7.1 0.00049 20.1 7.1 2.8 3 0 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|325968807|ref|YP_004244999.1| - 0.00065 19.1 26.9 0.0069 15.7 26.9 2.6 1 1 0 1 1 1 1 ABC-2 family transporter protein DNA_ligase_C PF17879.1 gi|325968807|ref|YP_004244999.1| - 0.17 11.9 0.1 0.32 11.1 0.1 1.4 1 0 0 1 1 1 0 DNA ligase C-terminal domain EMP70 PF02990.16 gi|325968807|ref|YP_004244999.1| - 0.79 8.3 11.4 0.15 10.7 0.4 2.4 1 1 1 2 2 2 0 Endomembrane protein 70 MARVEL PF01284.23 gi|325968807|ref|YP_004244999.1| - 4 7.5 12.1 0.046 13.8 1.6 2.6 3 0 0 3 3 3 0 Membrane-associating domain PBP PF01161.20 gi|325968808|ref|YP_004245000.1| - 9.8e-40 135.9 0.0 1.1e-39 135.7 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ILVD_EDD PF00920.21 gi|325968809|ref|YP_004245001.1| - 5.2e-209 695.2 0.0 5.8e-209 695.0 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family MazE_antitoxin PF04014.18 gi|325968809|ref|YP_004245001.1| - 0.73 9.8 4.0 7.1 6.7 0.0 3.3 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin RNA_binding PF01877.17 gi|325968810|ref|YP_004245002.1| - 9.4e-31 106.6 0.1 1.2e-30 106.2 0.1 1.1 1 0 0 1 1 1 1 RNA binding GTP_cyclohydroI PF01227.22 gi|325968811|ref|YP_004245003.1| - 1.5e-49 167.8 0.0 1.9e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I CAMP_factor PF07373.11 gi|325968812|ref|YP_004245004.1| - 0.0027 17.3 2.1 0.0027 17.3 2.1 2.2 2 0 0 2 2 2 1 CAMP factor (Cfa) Fzo_mitofusin PF04799.13 gi|325968812|ref|YP_004245004.1| - 0.097 12.2 6.2 1.5 8.4 1.7 3.0 2 1 1 3 3 3 0 fzo-like conserved region SMC_hinge PF06470.13 gi|325968812|ref|YP_004245004.1| - 0.12 12.7 0.2 0.63 10.4 0.1 2.3 2 0 0 2 2 2 0 SMC proteins Flexible Hinge Domain HBM PF16591.5 gi|325968812|ref|YP_004245004.1| - 0.15 11.5 8.7 0.086 12.3 2.6 2.2 1 1 1 2 2 2 0 Helical bimodular sensor domain Syntaxin-6_N PF09177.11 gi|325968812|ref|YP_004245004.1| - 0.15 12.6 5.1 0.84 10.2 2.0 2.6 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Snapin_Pallidin PF14712.6 gi|325968812|ref|YP_004245004.1| - 0.34 11.3 10.0 0.29 11.6 4.7 2.9 2 1 0 2 2 2 0 Snapin/Pallidin APG6_N PF17675.1 gi|325968812|ref|YP_004245004.1| - 0.38 11.3 2.3 0.98 10.0 2.3 1.7 1 0 0 1 1 1 0 Apg6 coiled-coil region H-kinase_dim PF02895.14 gi|325968812|ref|YP_004245004.1| - 0.4 11.1 4.0 2.1 8.8 1.2 3.2 2 1 1 3 3 3 0 Signal transducing histidine kinase, homodimeric domain TRPM_tetra PF16519.5 gi|325968812|ref|YP_004245004.1| - 0.51 10.5 0.1 0.51 10.5 0.1 2.6 3 0 0 3 3 2 0 Tetramerisation domain of TRPM zf-C4H2 PF10146.9 gi|325968812|ref|YP_004245004.1| - 0.78 10.0 2.7 1 9.6 1.2 1.8 2 1 0 2 2 2 0 Zinc finger-containing protein FIVAR PF07554.13 gi|325968812|ref|YP_004245004.1| - 1.3 9.9 26.9 1.5 9.6 0.3 4.6 2 1 2 4 4 4 0 FIVAR domain DASH_Dam1 PF08653.10 gi|325968812|ref|YP_004245004.1| - 1.9 8.4 6.9 50 3.8 0.0 3.7 3 0 0 3 3 3 0 DASH complex subunit Dam1 YlbD_coat PF14071.6 gi|325968812|ref|YP_004245004.1| - 2.6 8.3 5.9 3.3 8.0 1.8 2.4 2 0 0 2 2 2 0 Putative coat protein TBK1_CCD1 PF18394.1 gi|325968812|ref|YP_004245004.1| - 3.1 7.3 6.5 5.6 6.4 3.3 2.5 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 FliJ PF02050.16 gi|325968812|ref|YP_004245004.1| - 3.7 7.8 8.6 13 6.0 3.4 2.8 2 1 0 2 2 2 0 Flagellar FliJ protein Spc24 PF08286.11 gi|325968812|ref|YP_004245004.1| - 5.2 7.4 15.9 30 4.9 0.2 3.7 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 ZapB PF06005.12 gi|325968812|ref|YP_004245004.1| - 5.6 7.5 7.5 1.7 9.1 0.7 2.8 2 1 1 3 3 3 0 Cell division protein ZapB DUF948 PF06103.11 gi|325968812|ref|YP_004245004.1| - 6.3 7.1 14.7 9.5 6.6 2.9 4.1 3 1 1 4 4 4 0 Bacterial protein of unknown function (DUF948) ABC_tran PF00005.27 gi|325968813|ref|YP_004245005.1| - 1.7e-32 112.8 0.1 4.4e-32 111.5 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|325968813|ref|YP_004245005.1| - 9.2e-07 29.0 0.0 0.005 16.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968813|ref|YP_004245005.1| - 0.00024 20.6 0.1 0.049 13.1 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|325968813|ref|YP_004245005.1| - 0.00092 18.4 0.0 0.0018 17.4 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein dNK PF01712.19 gi|325968813|ref|YP_004245005.1| - 0.0016 18.3 0.2 0.0048 16.8 0.0 1.7 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_16 PF13191.6 gi|325968813|ref|YP_004245005.1| - 0.0017 18.8 0.1 0.0032 17.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|325968813|ref|YP_004245005.1| - 0.0021 17.7 0.1 0.0046 16.7 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|325968813|ref|YP_004245005.1| - 0.0022 17.9 0.0 0.0047 16.8 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|325968813|ref|YP_004245005.1| - 0.0061 16.8 0.3 0.02 15.2 0.3 2.1 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|325968813|ref|YP_004245005.1| - 0.0063 16.1 0.2 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|325968813|ref|YP_004245005.1| - 0.0072 15.0 0.1 1 7.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain NTPase_1 PF03266.15 gi|325968813|ref|YP_004245005.1| - 0.028 14.3 0.4 2.2 8.1 0.2 2.8 1 1 1 3 3 3 0 NTPase AAA_30 PF13604.6 gi|325968813|ref|YP_004245005.1| - 0.031 14.0 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|325968813|ref|YP_004245005.1| - 0.037 12.8 0.1 0.081 11.6 0.1 1.5 1 1 1 2 2 2 0 RNA12 protein CbiA PF01656.23 gi|325968813|ref|YP_004245005.1| - 0.048 13.7 0.0 0.08 13.0 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Rad17 PF03215.15 gi|325968813|ref|YP_004245005.1| - 0.049 13.5 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|325968813|ref|YP_004245005.1| - 0.061 12.9 0.2 0.23 11.0 0.0 2.0 3 0 0 3 3 3 0 AAA domain ATP_bind_1 PF03029.17 gi|325968813|ref|YP_004245005.1| - 0.069 12.9 0.1 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|325968813|ref|YP_004245005.1| - 0.092 13.2 0.1 1.3 9.4 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|325968813|ref|YP_004245005.1| - 0.1 13.2 0.0 0.37 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|325968813|ref|YP_004245005.1| - 0.11 12.4 0.3 0.32 10.9 0.1 1.9 1 1 1 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|325968813|ref|YP_004245005.1| - 0.13 12.4 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|325968813|ref|YP_004245005.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|325968813|ref|YP_004245005.1| - 0.17 12.4 1.0 0.75 10.3 0.2 2.0 2 0 0 2 2 2 0 AAA domain MMPL PF03176.15 gi|325968814|ref|YP_004245006.1| - 7.8e-67 225.6 30.4 2.2e-46 158.4 9.6 2.7 3 0 0 3 3 3 2 MMPL family Intein_splicing PF14890.6 gi|325968814|ref|YP_004245006.1| - 0.12 12.3 0.0 0.54 10.2 0.0 2.1 1 1 0 1 1 1 0 Intein splicing domain RMI1_C PF16099.5 gi|325968815|ref|YP_004245007.1| - 0.092 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold CorA PF01544.18 gi|325968816|ref|YP_004245008.1| - 6.1e-12 45.5 0.4 1.8e-11 43.9 0.3 1.7 2 0 0 2 2 2 1 CorA-like Mg2+ transporter protein DUF5633 PF18656.1 gi|325968816|ref|YP_004245008.1| - 0.018 14.9 2.1 0.02 14.8 0.3 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5633) Benyvirus_14KDa PF07255.11 gi|325968816|ref|YP_004245008.1| - 0.088 13.0 0.3 2 8.7 0.0 2.3 1 1 1 2 2 2 0 Benyvirus 14KDa protein DUF1732 PF08340.11 gi|325968817|ref|YP_004245009.1| - 0.042 13.8 0.0 0.072 13.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1732) Ald_Xan_dh_C2 PF02738.18 gi|325968818|ref|YP_004245010.1| - 9.8e-117 390.7 0.1 1.1e-114 383.9 0.1 2.0 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|325968818|ref|YP_004245010.1| - 6.6e-17 61.9 0.0 3.4e-16 59.6 0.0 2.1 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Robl_LC7 PF03259.17 gi|325968819|ref|YP_004245011.1| - 9.2e-07 28.6 0.1 1.2e-06 28.2 0.1 1.2 1 0 0 1 1 1 1 Roadblock/LC7 domain MAPKK1_Int PF08923.10 gi|325968819|ref|YP_004245011.1| - 0.00034 20.4 0.0 0.00045 20.0 0.0 1.2 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting LAMTOR5 PF16672.5 gi|325968819|ref|YP_004245011.1| - 0.061 13.2 0.0 0.088 12.8 0.0 1.3 1 0 0 1 1 1 0 Ragulator complex protein LAMTOR5 Sugar_tr PF00083.24 gi|325968820|ref|YP_004245012.1| - 8.1e-55 186.5 30.5 1.3e-54 185.8 30.5 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325968820|ref|YP_004245012.1| - 1.1e-33 116.6 56.6 2.1e-25 89.4 22.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily COX7B PF05392.11 gi|325968820|ref|YP_004245012.1| - 0.084 12.6 0.1 0.3 10.8 0.1 1.9 1 0 0 1 1 1 0 Cytochrome C oxidase chain VIIB HAD_2 PF13419.6 gi|325968821|ref|YP_004245013.1| - 8.9e-22 78.0 0.0 1.6e-21 77.2 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|325968821|ref|YP_004245013.1| - 3.2e-13 50.5 0.0 1.6e-12 48.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|325968821|ref|YP_004245013.1| - 9.8e-07 28.8 0.0 1.7e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|325968821|ref|YP_004245013.1| - 0.00019 21.9 0.2 0.00041 20.8 0.2 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|325968821|ref|YP_004245013.1| - 0.021 14.4 0.1 2.2 7.9 0.0 2.3 2 1 0 2 2 2 0 Mitochondrial PGP phosphatase 5_nucleotid PF05761.14 gi|325968821|ref|YP_004245013.1| - 0.1 11.5 0.0 1.1 8.1 0.0 2.2 1 1 1 2 2 2 0 5' nucleotidase family PhoU_div PF01865.16 gi|325968822|ref|YP_004245014.1| - 1.1e-19 70.6 7.1 1.4e-19 70.3 7.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 AAA_PrkA PF08298.11 gi|325968822|ref|YP_004245014.1| - 0.064 12.2 1.6 0.075 11.9 0.3 1.7 2 0 0 2 2 2 0 PrkA AAA domain PhoU PF01895.19 gi|325968822|ref|YP_004245014.1| - 1.5 9.3 9.7 2.2 8.8 3.4 2.5 2 1 0 2 2 2 0 PhoU domain zf-C4H2 PF10146.9 gi|325968822|ref|YP_004245014.1| - 1.8 8.9 3.0 12 6.2 0.2 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein TIP49 PF06068.13 gi|325968824|ref|YP_004245016.1| - 3e-131 437.8 0.0 4.1e-131 437.4 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|325968824|ref|YP_004245016.1| - 1.9e-23 82.4 0.4 1.5e-22 79.5 0.5 2.2 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|325968824|ref|YP_004245016.1| - 8.9e-12 45.6 0.3 4e-08 33.7 0.1 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|325968824|ref|YP_004245016.1| - 2.1e-08 34.1 0.1 5.4e-05 23.0 0.0 2.7 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|325968824|ref|YP_004245016.1| - 1.2e-07 32.2 0.0 1.9e-06 28.4 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|325968824|ref|YP_004245016.1| - 3.8e-05 24.0 0.0 0.073 13.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|325968824|ref|YP_004245016.1| - 0.00011 22.2 0.1 0.017 15.1 0.0 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|325968824|ref|YP_004245016.1| - 0.00024 20.8 0.1 0.11 12.2 0.0 2.8 3 0 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|325968824|ref|YP_004245016.1| - 0.00025 20.5 0.1 0.0012 18.2 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI DnaB_C PF03796.15 gi|325968824|ref|YP_004245016.1| - 0.00027 20.4 0.0 0.00067 19.1 0.0 1.6 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_7 PF12775.7 gi|325968824|ref|YP_004245016.1| - 0.00064 19.3 0.1 0.061 12.8 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_25 PF13481.6 gi|325968824|ref|YP_004245016.1| - 0.003 17.2 0.0 0.0053 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|325968824|ref|YP_004245016.1| - 0.0035 17.6 0.2 0.036 14.3 0.0 2.5 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.6 gi|325968824|ref|YP_004245016.1| - 0.0056 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|325968824|ref|YP_004245016.1| - 0.0061 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 gi|325968824|ref|YP_004245016.1| - 0.015 15.2 0.2 0.068 13.1 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_11 PF13086.6 gi|325968824|ref|YP_004245016.1| - 0.039 13.7 0.1 0.087 12.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|325968824|ref|YP_004245016.1| - 0.045 13.5 0.0 0.17 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|325968824|ref|YP_004245016.1| - 0.047 13.0 0.0 0.096 12.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|325968824|ref|YP_004245016.1| - 0.054 13.9 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|325968824|ref|YP_004245016.1| - 0.065 13.8 0.0 0.17 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|325968824|ref|YP_004245016.1| - 0.085 12.3 0.1 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|325968824|ref|YP_004245016.1| - 0.092 13.3 0.0 0.19 12.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.6 gi|325968824|ref|YP_004245016.1| - 0.1 13.0 0.1 2.2 8.7 0.0 2.8 3 0 0 3 3 2 0 AAA domain DUF2075 PF09848.9 gi|325968824|ref|YP_004245016.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|325968824|ref|YP_004245016.1| - 0.16 12.3 3.8 1.4 9.3 1.8 2.6 2 1 0 2 2 2 0 AAA domain DUF3525 PF12039.8 gi|325968824|ref|YP_004245016.1| - 0.17 10.6 0.0 0.34 9.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) AAA_30 PF13604.6 gi|325968824|ref|YP_004245016.1| - 2.1 8.0 4.9 0.96 9.1 0.1 2.7 4 0 0 4 4 4 0 AAA domain Beta-Casp PF10996.8 gi|325968825|ref|YP_004245017.1| - 1.8e-14 54.0 0.0 6.4e-14 52.2 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.27 gi|325968825|ref|YP_004245017.1| - 1.5e-13 51.2 0.1 5.2e-13 49.5 0.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|325968825|ref|YP_004245017.1| - 3.1e-12 46.2 0.4 1e-11 44.6 0.1 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|325968825|ref|YP_004245017.1| - 3.4e-12 46.2 0.0 5.5e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|325968825|ref|YP_004245017.1| - 4.2e-09 36.2 0.0 7.4e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DRMBL PF07522.14 gi|325968825|ref|YP_004245017.1| - 0.081 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase Radical_SAM PF04055.21 gi|325968826|ref|YP_004245018.1| - 2.1e-25 90.0 0.1 5e-25 88.8 0.1 1.7 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|325968826|ref|YP_004245018.1| - 4.5e-11 43.1 0.2 9.5e-11 42.1 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|325968826|ref|YP_004245018.1| - 3.3e-08 33.9 0.1 6.7e-08 32.9 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325968826|ref|YP_004245018.1| - 1.2e-07 31.8 0.0 2.3e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|325968827|ref|YP_004245019.1| - 5e-16 59.5 0.0 8.6e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|325968827|ref|YP_004245019.1| - 2.6e-07 31.0 0.0 4.7e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325968827|ref|YP_004245019.1| - 0.00014 22.0 0.0 0.00072 19.7 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|325968827|ref|YP_004245019.1| - 0.0086 16.6 0.0 0.023 15.2 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain TP_methylase PF00590.20 gi|325968827|ref|YP_004245019.1| - 0.12 12.2 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases His_Phos_1 PF00300.22 gi|325968829|ref|YP_004245021.1| - 2.7e-37 128.4 0.0 3.2e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Peptidase_M24 PF00557.24 gi|325968830|ref|YP_004245022.1| - 2.9e-55 187.2 0.2 3.8e-55 186.8 0.2 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|325968830|ref|YP_004245022.1| - 8.5e-11 42.6 0.0 2.3e-10 41.3 0.0 1.7 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain CRAL_TRIO PF00650.20 gi|325968830|ref|YP_004245022.1| - 0.082 12.6 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 CRAL/TRIO domain JmjN PF02375.17 gi|325968831|ref|YP_004245023.1| - 0.067 13.2 0.1 0.15 12.1 0.1 1.6 1 0 0 1 1 1 0 jmjN domain PAC2 PF09754.9 gi|325968831|ref|YP_004245023.1| - 0.093 12.7 0.0 0.16 11.9 0.0 1.5 1 1 0 1 1 1 0 PAC2 family H_PPase PF03030.16 gi|325968832|ref|YP_004245024.1| - 2.2e-216 720.5 42.2 2.5e-216 720.3 42.2 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase Carboxyl_trans PF01039.22 gi|325968832|ref|YP_004245024.1| - 0.042 12.5 0.3 0.083 11.5 0.1 1.5 2 0 0 2 2 2 0 Carboxyl transferase domain PEP-utilizers_C PF02896.18 gi|325968833|ref|YP_004245025.1| - 5.5e-78 262.1 0.1 9.7e-78 261.2 0.1 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|325968833|ref|YP_004245025.1| - 1e-45 156.5 0.0 2.6e-35 122.2 0.0 3.1 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|325968833|ref|YP_004245025.1| - 8.1e-26 89.6 1.1 3.3e-25 87.6 0.9 2.2 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain RNase_P_p30 PF01876.16 gi|325968833|ref|YP_004245025.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 RNase P subunit p30 TauE PF01925.19 gi|325968834|ref|YP_004245026.1| - 2.9e-48 164.6 39.5 3.3e-48 164.4 39.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1304 PF06993.12 gi|325968834|ref|YP_004245026.1| - 0.031 14.2 0.2 0.031 14.2 0.2 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1304) DUF4418 PF14387.6 gi|325968836|ref|YP_004245028.1| - 5.1 7.3 9.3 2.7 8.2 0.9 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4418) Nop PF01798.18 gi|325968837|ref|YP_004245029.1| - 1.8e-64 217.4 0.0 2.8e-64 216.7 0.0 1.3 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin MTBP_mid PF14919.6 gi|325968837|ref|YP_004245029.1| - 0.022 14.0 0.0 0.036 13.3 0.0 1.3 1 0 0 1 1 1 0 MDM2-binding HAD_2 PF13419.6 gi|325968837|ref|YP_004245029.1| - 0.14 12.2 0.2 5 7.2 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Fibrillarin PF01269.17 gi|325968838|ref|YP_004245030.1| - 1.2e-101 338.6 0.4 1.3e-101 338.5 0.4 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|325968838|ref|YP_004245030.1| - 1.6e-05 24.8 0.0 2.6e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|325968838|ref|YP_004245030.1| - 0.00066 19.4 0.0 0.00093 18.9 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F GCD14 PF08704.10 gi|325968838|ref|YP_004245030.1| - 0.0067 16.1 0.0 0.0084 15.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.18 gi|325968838|ref|YP_004245030.1| - 0.094 12.0 0.0 0.19 11.0 0.0 1.4 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family HTH_3 PF01381.22 gi|325968839|ref|YP_004245031.1| - 3.5e-12 46.2 0.5 1.4e-11 44.2 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|325968839|ref|YP_004245031.1| - 3e-11 43.2 0.5 8.7e-11 41.7 0.5 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|325968839|ref|YP_004245031.1| - 1.1e-09 38.4 0.1 2.6e-09 37.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|325968839|ref|YP_004245031.1| - 7.5e-06 25.8 0.0 2e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|325968839|ref|YP_004245031.1| - 5.6e-05 22.8 0.2 0.00016 21.4 0.1 1.8 2 0 0 2 2 1 1 Homeodomain-like domain MerR PF00376.23 gi|325968839|ref|YP_004245031.1| - 0.00097 18.9 0.2 0.0021 17.8 0.2 1.6 1 0 0 1 1 1 1 MerR family regulatory protein HTH_25 PF13413.6 gi|325968839|ref|YP_004245031.1| - 0.0032 17.3 0.3 0.0069 16.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|325968839|ref|YP_004245031.1| - 0.0036 17.3 0.1 0.02 15.0 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|325968839|ref|YP_004245031.1| - 0.0061 16.6 0.1 0.053 13.5 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn helix HTH_17 PF12728.7 gi|325968839|ref|YP_004245031.1| - 0.015 15.4 1.4 0.033 14.4 0.0 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain MerR_1 PF13411.6 gi|325968839|ref|YP_004245031.1| - 0.015 15.3 0.0 0.036 14.2 0.0 1.7 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_24 PF13412.6 gi|325968839|ref|YP_004245031.1| - 0.019 14.5 0.0 0.061 12.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|325968839|ref|YP_004245031.1| - 0.02 15.3 0.1 0.044 14.2 0.1 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MarR PF01047.22 gi|325968839|ref|YP_004245031.1| - 0.027 14.4 0.0 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.6 gi|325968839|ref|YP_004245031.1| - 0.03 14.1 0.0 0.057 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|325968839|ref|YP_004245031.1| - 0.041 14.0 0.0 0.091 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|325968839|ref|YP_004245031.1| - 0.049 13.4 0.2 0.23 11.2 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family MqsA_antitoxin PF15731.5 gi|325968839|ref|YP_004245031.1| - 0.054 13.6 0.1 2.3 8.3 0.1 2.4 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Sigma70_r4 PF04545.16 gi|325968839|ref|YP_004245031.1| - 0.081 12.5 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|325968839|ref|YP_004245031.1| - 0.092 12.6 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|325968839|ref|YP_004245031.1| - 0.11 12.5 0.0 0.97 9.5 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|325968839|ref|YP_004245031.1| - 0.13 12.1 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain TetR_N PF00440.23 gi|325968839|ref|YP_004245031.1| - 0.13 12.1 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family GP3_package PF16677.5 gi|325968839|ref|YP_004245031.1| - 0.15 12.2 0.0 0.37 10.9 0.0 1.6 2 0 0 2 2 1 0 DNA-packaging protein gp3 TRM PF02005.16 gi|325968840|ref|YP_004245032.1| - 1.4e-85 287.8 0.0 1.6e-85 287.5 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|325968840|ref|YP_004245032.1| - 2.7e-05 24.0 0.0 4.3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|325968840|ref|YP_004245032.1| - 0.00089 18.9 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.6 gi|325968840|ref|YP_004245032.1| - 0.002 17.9 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968840|ref|YP_004245032.1| - 0.004 17.8 0.0 0.0065 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|325968840|ref|YP_004245032.1| - 0.025 15.6 0.0 0.043 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|325968840|ref|YP_004245032.1| - 0.06 12.5 0.0 0.094 11.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase PrmA PF06325.13 gi|325968840|ref|YP_004245032.1| - 0.25 10.7 0.1 0.34 10.3 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) AAA_17 PF13207.6 gi|325968841|ref|YP_004245033.1| - 8.8e-15 55.3 0.0 1.2e-14 54.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|325968841|ref|YP_004245033.1| - 9.8e-09 35.8 0.0 1.9e-08 34.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|325968841|ref|YP_004245033.1| - 2.5e-08 34.2 0.0 4.1e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|325968841|ref|YP_004245033.1| - 0.00093 19.4 0.1 0.018 15.2 0.0 2.3 1 1 0 2 2 2 1 Cytidylate kinase-like family KTI12 PF08433.10 gi|325968841|ref|YP_004245033.1| - 0.0012 18.3 0.0 0.0078 15.7 0.0 2.0 2 1 0 2 2 2 1 Chromatin associated protein KTI12 ADK PF00406.22 gi|325968841|ref|YP_004245033.1| - 0.0024 18.0 0.0 0.011 15.8 0.0 1.9 1 1 0 1 1 1 1 Adenylate kinase CoaE PF01121.20 gi|325968841|ref|YP_004245033.1| - 0.0038 16.9 0.1 0.17 11.6 0.1 2.3 2 1 0 2 2 2 1 Dephospho-CoA kinase ATP_bind_2 PF03668.15 gi|325968841|ref|YP_004245033.1| - 0.022 14.1 1.1 0.1 11.9 1.1 2.0 1 1 0 1 1 1 0 P-loop ATPase protein family Zeta_toxin PF06414.12 gi|325968841|ref|YP_004245033.1| - 0.04 13.2 0.0 0.06 12.6 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|325968841|ref|YP_004245033.1| - 0.044 14.2 0.0 0.097 13.1 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|325968841|ref|YP_004245033.1| - 0.054 13.1 0.1 1.5 8.4 0.1 2.3 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|325968841|ref|YP_004245033.1| - 0.077 12.9 0.4 0.37 10.7 0.4 2.1 1 1 1 2 2 2 0 NTPase APS_kinase PF01583.20 gi|325968841|ref|YP_004245033.1| - 0.084 12.8 0.0 0.15 11.9 0.0 1.6 1 1 0 1 1 1 0 Adenylylsulphate kinase DUF2075 PF09848.9 gi|325968841|ref|YP_004245033.1| - 0.16 11.2 0.3 0.48 9.6 0.3 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) HTH_3 PF01381.22 gi|325968842|ref|YP_004245034.1| - 3.2e-09 36.7 0.0 6.5e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|325968842|ref|YP_004245034.1| - 2.6e-08 33.8 0.0 7e-08 32.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|325968842|ref|YP_004245034.1| - 1.3e-07 31.9 0.0 3e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|325968842|ref|YP_004245034.1| - 0.0023 17.5 0.2 0.11 12.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|325968842|ref|YP_004245034.1| - 0.0073 16.1 0.0 0.022 14.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|325968842|ref|YP_004245034.1| - 0.043 13.7 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_Crp_2 PF13545.6 gi|325968842|ref|YP_004245034.1| - 0.054 13.5 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|325968842|ref|YP_004245034.1| - 0.083 12.6 0.1 0.34 10.6 0.0 2.1 2 1 1 3 3 3 0 Sigma-70, region 4 Fer2_3 PF13085.6 gi|325968843|ref|YP_004245035.1| - 6.7e-35 119.4 0.0 1.4e-34 118.4 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|325968843|ref|YP_004245035.1| - 1.7e-11 44.4 1.1 1.7e-11 44.4 1.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325968843|ref|YP_004245035.1| - 1.3e-08 34.8 0.8 1.3e-08 34.8 0.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325968843|ref|YP_004245035.1| - 6.3e-08 32.7 1.5 6.3e-08 32.7 1.5 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325968843|ref|YP_004245035.1| - 1.2e-07 32.2 3.1 1.3e-07 32.1 1.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325968843|ref|YP_004245035.1| - 1.1e-06 29.1 1.0 1.1e-06 29.1 1.0 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325968843|ref|YP_004245035.1| - 1.2e-05 26.2 0.9 1.2e-05 26.2 0.9 2.1 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|325968843|ref|YP_004245035.1| - 0.00014 21.5 1.1 0.00014 21.5 1.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer2 PF00111.27 gi|325968843|ref|YP_004245035.1| - 0.00025 21.0 0.0 0.00025 21.0 0.0 1.9 3 0 0 3 3 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_13 PF13370.6 gi|325968843|ref|YP_004245035.1| - 0.0012 19.4 0.4 0.0012 19.4 0.4 2.8 3 0 0 3 3 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|325968843|ref|YP_004245035.1| - 0.0023 17.9 1.3 0.0023 17.9 1.3 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325968843|ref|YP_004245035.1| - 0.0029 18.0 0.8 0.0029 18.0 0.8 3.1 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325968843|ref|YP_004245035.1| - 0.0031 17.6 4.5 0.032 14.4 0.7 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|325968843|ref|YP_004245035.1| - 0.012 15.8 3.5 1.4 9.2 0.4 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325968843|ref|YP_004245035.1| - 0.012 15.6 1.0 0.012 15.6 1.0 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|325968843|ref|YP_004245035.1| - 0.27 12.1 5.0 3.5 8.5 1.8 2.7 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|325968843|ref|YP_004245035.1| - 0.32 11.8 1.9 0.38 11.5 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|325968843|ref|YP_004245035.1| - 7 7.8 21.0 1.2 10.2 4.6 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.22 gi|325968844|ref|YP_004245036.1| - 1e-20 74.0 4.2 1.4e-20 73.6 4.2 1.2 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|325968845|ref|YP_004245037.1| - 0.00093 19.2 12.0 0.0011 19.0 11.6 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4405 PF14358.6 gi|325968845|ref|YP_004245037.1| - 0.0084 16.6 1.6 0.0084 16.6 1.6 3.1 3 1 0 3 3 3 1 Domain of unknown function (DUF4405) Aminotran_5 PF00266.19 gi|325968846|ref|YP_004245038.1| - 1.6e-24 86.6 0.0 2.1e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|325968846|ref|YP_004245038.1| - 1.6e-05 23.7 0.0 2.7e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme AAA_15 PF13175.6 gi|325968847|ref|YP_004245039.1| - 0.00015 21.7 0.0 0.00018 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|325968847|ref|YP_004245039.1| - 0.00019 22.0 0.0 0.00027 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325968847|ref|YP_004245039.1| - 0.00072 19.8 0.0 0.29 11.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 gi|325968847|ref|YP_004245039.1| - 0.00095 19.1 0.4 0.0075 16.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|325968847|ref|YP_004245039.1| - 0.0011 19.5 0.0 0.0017 18.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|325968847|ref|YP_004245039.1| - 0.0062 16.0 0.0 0.012 15.1 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.6 gi|325968847|ref|YP_004245039.1| - 0.011 16.2 0.0 0.18 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|325968847|ref|YP_004245039.1| - 0.012 15.4 0.1 0.025 14.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|325968847|ref|YP_004245039.1| - 0.039 14.3 0.0 0.11 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|325968847|ref|YP_004245039.1| - 0.083 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.8 gi|325968847|ref|YP_004245039.1| - 0.17 11.1 0.1 0.27 10.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) cobW PF02492.19 gi|325968847|ref|YP_004245039.1| - 0.18 11.3 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain KTI12 PF08433.10 gi|325968847|ref|YP_004245039.1| - 0.19 11.1 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 PadR PF03551.14 gi|325968848|ref|YP_004245040.1| - 2.4e-19 69.1 0.0 4.3e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|325968848|ref|YP_004245040.1| - 0.00012 21.9 0.5 0.00092 19.0 0.2 2.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4364) RTP PF02334.16 gi|325968848|ref|YP_004245040.1| - 0.00022 21.8 0.0 0.00034 21.2 0.0 1.3 1 0 0 1 1 1 1 Replication terminator protein TrmB PF01978.19 gi|325968848|ref|YP_004245040.1| - 0.00053 19.8 0.3 0.043 13.7 0.1 2.7 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|325968848|ref|YP_004245040.1| - 0.0035 17.2 0.1 0.58 10.1 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_42 PF06224.12 gi|325968848|ref|YP_004245040.1| - 0.0061 16.1 0.0 0.0068 16.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 gi|325968848|ref|YP_004245040.1| - 0.02 13.3 0.0 0.023 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) FUR PF01475.19 gi|325968848|ref|YP_004245040.1| - 0.02 15.0 0.0 0.03 14.5 0.0 1.3 1 1 0 1 1 1 0 Ferric uptake regulator family AphA_like PF14557.6 gi|325968848|ref|YP_004245040.1| - 0.045 13.5 0.0 0.047 13.4 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator Aminotran_1_2 PF00155.21 gi|325968849|ref|YP_004245041.1| - 1.9e-31 109.5 0.0 2.3e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DUF1957 PF09210.11 gi|325968849|ref|YP_004245041.1| - 0.041 14.3 0.0 0.091 13.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1957) Peptidase_M20 PF01546.28 gi|325968850|ref|YP_004245042.1| - 8.8e-37 126.8 0.0 1.2e-36 126.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|325968850|ref|YP_004245042.1| - 9e-22 77.1 0.0 3.5e-21 75.2 0.0 2.0 1 1 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|325968850|ref|YP_004245042.1| - 0.00045 20.0 0.0 0.0012 18.6 0.0 1.6 2 0 0 2 2 2 1 Peptidase family M28 tRNA-synt_2c PF01411.19 gi|325968851|ref|YP_004245043.1| - 3e-11 42.6 0.0 4e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|325968851|ref|YP_004245043.1| - 4.5e-11 42.7 0.1 9.9e-11 41.6 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Yip1 PF04893.17 gi|325968853|ref|YP_004245045.1| - 0.024 14.3 24.0 0.037 13.7 24.0 1.3 1 0 0 1 1 1 0 Yip1 domain Bunya_G2 PF03563.13 gi|325968853|ref|YP_004245045.1| - 8 5.6 10.1 0.073 12.3 1.6 1.9 2 0 0 2 2 2 0 Bunyavirus glycoprotein G2 ABC_tran PF00005.27 gi|325968854|ref|YP_004245046.1| - 1.2e-28 100.3 0.0 1.5e-28 100.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325968854|ref|YP_004245046.1| - 2.4e-10 40.8 2.2 3.3e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968854|ref|YP_004245046.1| - 3.2e-05 23.5 0.2 0.1 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|325968854|ref|YP_004245046.1| - 0.0022 17.7 0.0 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|325968854|ref|YP_004245046.1| - 0.0044 17.2 0.1 0.12 12.6 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|325968854|ref|YP_004245046.1| - 0.0065 16.2 0.1 0.13 11.9 0.1 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|325968854|ref|YP_004245046.1| - 0.0088 16.3 1.0 0.11 12.8 0.2 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|325968854|ref|YP_004245046.1| - 0.018 15.6 0.2 0.029 14.9 0.2 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|325968854|ref|YP_004245046.1| - 0.049 13.2 0.0 0.83 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|325968854|ref|YP_004245046.1| - 0.055 13.6 0.1 0.14 12.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|325968854|ref|YP_004245046.1| - 0.086 12.6 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|325968854|ref|YP_004245046.1| - 0.1 12.3 0.0 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|325968854|ref|YP_004245046.1| - 0.1 13.0 0.1 0.22 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.6 gi|325968854|ref|YP_004245046.1| - 0.11 12.7 0.1 0.32 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|325968854|ref|YP_004245046.1| - 0.11 12.3 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|325968854|ref|YP_004245046.1| - 0.13 12.8 0.0 0.47 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|325968854|ref|YP_004245046.1| - 0.14 11.8 0.1 0.28 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|325968854|ref|YP_004245046.1| - 0.2 11.6 0.1 0.38 10.6 0.1 1.5 1 0 0 1 1 1 0 NACHT domain CARDB PF07705.11 gi|325968855|ref|YP_004245047.1| - 0.00011 22.4 2.2 0.00011 22.4 2.2 4.5 4 2 0 4 4 4 2 CARDB DUF11 PF01345.18 gi|325968855|ref|YP_004245047.1| - 0.0025 18.1 1.5 0.0025 18.1 1.5 4.4 4 2 1 5 5 5 1 Domain of unknown function DUF11 Sec23_BS PF08033.12 gi|325968855|ref|YP_004245047.1| - 0.17 12.7 9.5 0.5 11.1 2.3 3.8 4 0 0 4 4 4 0 Sec23/Sec24 beta-sandwich domain Alpha_adaptinC2 PF02883.20 gi|325968855|ref|YP_004245047.1| - 1.1 9.6 11.5 9.6 6.6 4.6 4.2 3 1 1 4 4 4 0 Adaptin C-terminal domain DUF4064 PF13273.6 gi|325968855|ref|YP_004245047.1| - 5.4 7.4 10.0 0.095 13.0 0.7 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4064) FtsX PF02687.21 gi|325968856|ref|YP_004245048.1| - 6.1e-12 45.9 8.3 6.1e-12 45.9 8.3 3.6 3 1 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 gi|325968856|ref|YP_004245048.1| - 2.1e-08 34.8 9.8 2.1e-08 34.8 9.8 2.4 3 0 0 3 3 3 1 MacB-like periplasmic core domain AAA_22 PF13401.6 gi|325968857|ref|YP_004245049.1| - 0.00015 22.1 0.0 0.00062 20.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|325968857|ref|YP_004245049.1| - 0.00017 21.6 0.0 0.00049 20.1 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|325968857|ref|YP_004245049.1| - 0.0039 17.2 0.0 0.73 9.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|325968857|ref|YP_004245049.1| - 0.0058 17.0 0.1 0.019 15.4 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain YajC PF02699.15 gi|325968858|ref|YP_004245050.1| - 0.016 15.1 0.5 0.016 15.1 0.5 1.8 2 0 0 2 2 2 0 Preprotein translocase subunit Sar8_2 PF03058.14 gi|325968858|ref|YP_004245050.1| - 0.098 13.2 0.2 0.22 12.1 0.2 1.6 1 0 0 1 1 1 0 Sar8.2 family Phage_holin_3_6 PF07332.11 gi|325968858|ref|YP_004245050.1| - 1.9 8.6 12.8 4.8 7.3 3.2 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Polbeta PF18765.1 gi|325968860|ref|YP_004245052.1| - 5.8e-13 48.7 0.0 7.8e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|325968860|ref|YP_004245052.1| - 9.8e-06 25.8 0.0 1.5e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|325968861|ref|YP_004245053.1| - 1.1e-18 67.3 2.4 1.3e-18 67.0 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Colicin PF01024.19 gi|325968861|ref|YP_004245053.1| - 0.061 13.2 0.2 0.093 12.6 0.2 1.3 1 0 0 1 1 1 0 Colicin pore forming domain Sugar_tr PF00083.24 gi|325968862|ref|YP_004245054.1| - 3.1e-48 164.8 25.6 4.1e-48 164.4 25.6 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325968862|ref|YP_004245054.1| - 8.6e-29 100.6 34.9 8.6e-29 100.6 34.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|325968862|ref|YP_004245054.1| - 0.00098 18.1 19.9 0.035 13.0 0.2 3.3 2 2 1 3 3 3 2 MFS_1 like family DUF1129 PF06570.11 gi|325968862|ref|YP_004245054.1| - 0.0086 15.6 0.8 0.0086 15.6 0.8 3.1 2 1 0 2 2 2 1 Protein of unknown function (DUF1129) Ribosomal_L5_C PF00673.21 gi|325968863|ref|YP_004245055.1| - 7e-20 71.0 0.0 1.1e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|325968863|ref|YP_004245055.1| - 1.6e-18 66.7 0.2 3.5e-18 65.7 0.1 1.7 2 0 0 2 2 2 1 Ribosomal protein L5 DUF2862 PF11061.8 gi|325968863|ref|YP_004245055.1| - 0.022 14.6 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2862) SBP_bac_5 PF00496.22 gi|325968864|ref|YP_004245056.1| - 9.5e-61 205.8 2.0 9.5e-61 205.8 2.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Peptidase_S66 PF02016.15 gi|325968865|ref|YP_004245057.1| - 5.9e-32 110.3 0.0 1.1e-31 109.5 0.0 1.4 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|325968865|ref|YP_004245057.1| - 6.2e-24 84.9 0.0 9.1e-24 84.4 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain GATase_6 PF13522.6 gi|325968866|ref|YP_004245058.1| - 2.6e-09 37.4 0.0 4.2e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|325968866|ref|YP_004245058.1| - 0.0082 16.1 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Orn_Arg_deC_N PF02784.16 gi|325968867|ref|YP_004245059.1| - 3.2e-35 121.7 0.0 4.2e-35 121.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|325968867|ref|YP_004245059.1| - 4.5e-26 90.9 0.0 5e-26 90.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 4HBT PF03061.22 gi|325968868|ref|YP_004245060.1| - 5.1e-16 58.8 0.8 9e-16 58.0 0.8 1.4 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|325968868|ref|YP_004245060.1| - 1.6e-05 25.3 0.1 2.1e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily CoA_transf_3 PF02515.17 gi|325968869|ref|YP_004245061.1| - 3.2e-78 263.4 0.0 4.1e-78 263.1 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III VitK2_biosynth PF02621.14 gi|325968870|ref|YP_004245062.1| - 2.4e-77 260.0 0.1 2.7e-77 259.9 0.1 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.14 gi|325968871|ref|YP_004245063.1| - 1.4e-27 96.9 0.0 2.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 Menaquinone biosynthesis Radical_SAM PF04055.21 gi|325968872|ref|YP_004245064.1| - 7.2e-11 42.7 0.0 1.3e-10 41.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF1296 PF06972.11 gi|325968872|ref|YP_004245064.1| - 0.14 12.3 0.0 42 4.4 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1296) Radical_SAM PF04055.21 gi|325968873|ref|YP_004245065.1| - 6e-16 59.3 0.1 1.5e-15 58.0 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DUF4995 PF16386.5 gi|325968873|ref|YP_004245065.1| - 0.016 15.2 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF905 PF06006.12 gi|325968873|ref|YP_004245065.1| - 0.025 14.6 0.0 0.053 13.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF905) AP_endonuc_2 PF01261.24 gi|325968873|ref|YP_004245065.1| - 0.16 11.4 0.1 1.2 8.5 0.0 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Rieske PF00355.26 gi|325968874|ref|YP_004245066.1| - 8.1e-12 44.9 0.0 1e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|325968874|ref|YP_004245066.1| - 2.2e-06 27.5 0.0 3.7e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain FAD_binding_4 PF01565.23 gi|325968875|ref|YP_004245067.1| - 4.4e-37 126.9 0.1 6.9e-37 126.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|325968875|ref|YP_004245067.1| - 5.4e-30 104.8 0.0 8.5e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FGGY_N PF00370.21 gi|325968876|ref|YP_004245068.1| - 1.3e-25 90.4 0.0 1.9e-25 89.9 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|325968876|ref|YP_004245068.1| - 3.3e-22 79.2 0.0 1.2e-21 77.3 0.0 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain Pyr_redox_2 PF07992.14 gi|325968877|ref|YP_004245069.1| - 9.3e-09 34.9 0.4 1.4e-08 34.4 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325968877|ref|YP_004245069.1| - 2.9e-07 30.6 0.4 7.1e-07 29.4 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|325968877|ref|YP_004245069.1| - 5.5e-07 30.1 0.2 1.4e-05 25.5 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|325968877|ref|YP_004245069.1| - 2.2e-05 23.9 0.1 0.13 11.5 0.2 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|325968877|ref|YP_004245069.1| - 0.00022 20.4 0.1 0.00041 19.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|325968877|ref|YP_004245069.1| - 0.00026 20.4 1.1 0.00043 19.6 0.5 1.6 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|325968877|ref|YP_004245069.1| - 0.0022 17.6 2.1 0.0028 17.3 1.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|325968877|ref|YP_004245069.1| - 0.021 13.9 0.1 0.038 13.0 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|325968877|ref|YP_004245069.1| - 0.022 15.2 0.7 0.18 12.2 0.1 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding Glyco_transf_4 PF13439.6 gi|325968877|ref|YP_004245069.1| - 0.026 14.5 0.2 1.4 8.9 0.1 2.3 2 0 0 2 2 2 0 Glycosyltransferase Family 4 GIDA PF01134.22 gi|325968877|ref|YP_004245069.1| - 0.041 13.0 0.1 0.064 12.3 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|325968877|ref|YP_004245069.1| - 0.058 12.7 0.4 0.094 12.0 0.4 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase TrkA_N PF02254.18 gi|325968877|ref|YP_004245069.1| - 0.39 11.0 3.2 14 5.9 0.2 2.9 3 1 0 3 3 3 0 TrkA-N domain DAO PF01266.24 gi|325968878|ref|YP_004245070.1| - 1.4e-51 176.2 0.1 8e-51 173.7 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|325968878|ref|YP_004245070.1| - 6.7e-13 48.8 1.5 1.2e-12 48.0 1.5 1.4 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_3 PF13738.6 gi|325968878|ref|YP_004245070.1| - 8.2e-09 35.1 0.2 7.8e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|325968878|ref|YP_004245070.1| - 8.8e-08 31.7 0.1 0.00097 18.4 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325968878|ref|YP_004245070.1| - 1.5e-07 31.9 0.4 0.0088 16.6 0.3 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|325968878|ref|YP_004245070.1| - 1.9e-07 30.2 0.0 0.0016 17.2 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|325968878|ref|YP_004245070.1| - 1.5e-06 27.7 0.0 0.00026 20.3 0.3 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|325968878|ref|YP_004245070.1| - 6e-06 26.4 0.0 1.8e-05 24.9 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|325968878|ref|YP_004245070.1| - 1.8e-05 24.1 0.6 0.00015 21.1 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|325968878|ref|YP_004245070.1| - 0.00015 21.0 0.0 0.062 12.4 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|325968878|ref|YP_004245070.1| - 0.00035 19.8 0.1 0.00085 18.5 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|325968878|ref|YP_004245070.1| - 0.0012 18.4 0.1 0.0019 17.8 0.1 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|325968878|ref|YP_004245070.1| - 0.018 14.7 0.1 0.032 13.9 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|325968878|ref|YP_004245070.1| - 0.038 13.9 0.1 0.069 13.0 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SO_alpha_A3 PF17806.1 gi|325968878|ref|YP_004245070.1| - 0.055 13.8 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Sarcosine oxidase A3 domain DUF1145 PF06611.12 gi|325968878|ref|YP_004245070.1| - 0.15 12.0 0.0 0.36 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1145) Phosphoesterase PF04185.14 gi|325968879|ref|YP_004245071.1| - 5.7e-67 226.4 0.4 9e-67 225.8 0.4 1.3 1 0 0 1 1 1 1 Phosphoesterase family ADC PF06314.11 gi|325968883|ref|YP_004245075.1| - 3e-42 144.8 0.0 3.8e-42 144.5 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Acyl-CoA_dh_1 PF00441.24 gi|325968884|ref|YP_004245076.1| - 4e-26 92.0 0.5 6.3e-26 91.4 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|325968884|ref|YP_004245076.1| - 3.8e-15 56.3 0.3 6.1e-15 55.7 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|325968884|ref|YP_004245076.1| - 8.8e-12 45.1 0.0 2.2e-11 43.8 0.0 1.7 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|325968884|ref|YP_004245076.1| - 1.5e-11 45.0 0.0 2.8e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain SCP2 PF02036.17 gi|325968885|ref|YP_004245077.1| - 0.00036 21.0 0.1 0.00086 19.8 0.0 1.7 2 0 0 2 2 2 1 SCP-2 sterol transfer family ADH_N PF08240.12 gi|325968886|ref|YP_004245078.1| - 5e-30 103.6 0.0 7.6e-30 103.0 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|325968886|ref|YP_004245078.1| - 2.2e-27 95.6 0.0 5.5e-27 94.3 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|325968886|ref|YP_004245078.1| - 1.3e-09 39.2 0.0 2.6e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|325968886|ref|YP_004245078.1| - 1.2e-06 28.2 0.0 2.6e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|325968886|ref|YP_004245078.1| - 9.4e-06 25.1 0.1 1.5e-05 24.4 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|325968886|ref|YP_004245078.1| - 0.015 14.7 0.1 0.025 13.9 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|325968886|ref|YP_004245078.1| - 0.026 14.8 0.1 0.055 13.7 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain PglD_N PF17836.1 gi|325968886|ref|YP_004245078.1| - 0.07 13.8 0.1 0.16 12.6 0.1 1.6 1 0 0 1 1 1 0 PglD N-terminal domain TPP_enzyme_N PF02776.18 gi|325968887|ref|YP_004245079.1| - 1.1e-50 171.5 0.2 2.6e-49 167.1 0.0 2.8 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|325968887|ref|YP_004245079.1| - 6.4e-40 136.1 0.0 2.4e-39 134.2 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|325968887|ref|YP_004245079.1| - 7.1e-36 123.3 0.1 2.7e-35 121.4 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TP_methylase PF00590.20 gi|325968887|ref|YP_004245079.1| - 0.00032 20.7 1.7 0.14 12.1 0.1 2.7 3 0 0 3 3 3 2 Tetrapyrrole (Corrin/Porphyrin) Methylases 2-Hacid_dh_C PF02826.19 gi|325968888|ref|YP_004245080.1| - 1.2e-53 181.2 0.0 3.3e-53 179.7 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|325968888|ref|YP_004245080.1| - 2e-27 95.5 0.0 2.4e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|325968888|ref|YP_004245080.1| - 3.5e-05 24.2 0.0 0.22 11.9 0.0 2.3 2 0 0 2 2 2 2 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|325968888|ref|YP_004245080.1| - 0.0021 18.2 0.1 0.0055 16.9 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|325968888|ref|YP_004245080.1| - 0.029 14.4 0.4 2.6 8.1 0.0 2.7 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiC_Rad_SAM PF01964.18 gi|325968888|ref|YP_004245080.1| - 0.033 13.0 0.1 13 4.5 0.0 2.9 2 1 1 3 3 3 0 Radical SAM ThiC family NAD_binding_10 PF13460.6 gi|325968888|ref|YP_004245080.1| - 0.066 13.1 0.6 0.16 11.9 0.1 1.8 3 0 0 3 3 3 0 NAD(P)H-binding SCP2 PF02036.17 gi|325968889|ref|YP_004245081.1| - 6.9e-12 45.8 0.0 8.1e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family Alkyl_sulf_C PF14864.6 gi|325968889|ref|YP_004245081.1| - 1.4e-05 25.4 0.1 1.8e-05 25.0 0.1 1.3 1 1 0 1 1 1 1 Alkyl sulfatase C-terminal SCP_3 PF17844.1 gi|325968889|ref|YP_004245081.1| - 0.08 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial SCP ortholog 3HCDH_N PF02737.18 gi|325968890|ref|YP_004245082.1| - 1.2e-70 237.1 0.8 1.6e-70 236.6 0.8 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|325968890|ref|YP_004245082.1| - 8.9e-65 218.5 0.0 1.4e-64 217.9 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|325968890|ref|YP_004245082.1| - 5.2e-50 168.0 0.2 2e-24 86.0 0.0 3.9 4 0 0 4 4 4 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|325968890|ref|YP_004245082.1| - 1.2e-40 140.0 0.1 1.1e-39 136.9 0.0 2.3 2 1 1 3 3 3 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|325968890|ref|YP_004245082.1| - 1e-06 29.0 0.1 2.9e-06 27.5 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|325968890|ref|YP_004245082.1| - 3.3e-05 24.4 0.9 0.00014 22.4 0.8 2.0 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|325968890|ref|YP_004245082.1| - 0.00013 21.6 0.3 0.00022 20.8 0.3 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|325968890|ref|YP_004245082.1| - 0.00038 20.5 0.1 0.00078 19.5 0.1 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|325968890|ref|YP_004245082.1| - 0.0016 17.8 0.8 0.0031 16.8 0.8 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|325968890|ref|YP_004245082.1| - 0.0087 15.3 0.1 0.016 14.5 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.25 gi|325968890|ref|YP_004245082.1| - 0.027 13.9 0.1 0.047 13.2 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|325968890|ref|YP_004245082.1| - 0.072 13.3 0.2 0.13 12.5 0.2 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|325968890|ref|YP_004245082.1| - 0.08 12.3 0.2 0.17 11.2 0.2 1.5 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|325968890|ref|YP_004245082.1| - 0.098 12.9 0.1 0.25 11.6 0.1 1.7 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|325968890|ref|YP_004245082.1| - 0.16 12.5 0.2 0.37 11.3 0.2 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Thiolase_N PF00108.23 gi|325968891|ref|YP_004245083.1| - 1.4e-20 73.8 0.0 7.9e-17 61.5 0.0 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|325968891|ref|YP_004245083.1| - 1.9e-08 34.0 0.1 1.6e-06 27.8 0.1 2.9 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|325968891|ref|YP_004245083.1| - 7.8e-06 25.7 5.7 0.00076 19.1 1.9 2.9 2 1 1 3 3 3 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|325968891|ref|YP_004245083.1| - 0.017 14.9 0.9 0.45 10.4 0.7 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|325968891|ref|YP_004245083.1| - 0.081 12.9 0.0 21 5.2 0.0 2.9 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain SpoVAD PF07451.11 gi|325968891|ref|YP_004245083.1| - 0.13 11.0 0.0 0.25 10.0 0.0 1.4 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) OB_aCoA_assoc PF01796.17 gi|325968892|ref|YP_004245084.1| - 7.3e-15 54.7 0.2 1.1e-14 54.1 0.2 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|325968892|ref|YP_004245084.1| - 2.4e-13 49.7 1.8 4.2e-13 48.9 1.8 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|325968892|ref|YP_004245084.1| - 0.066 13.2 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ECH_1 PF00378.20 gi|325968893|ref|YP_004245085.1| - 3.8e-53 180.4 0.0 4.7e-53 180.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|325968893|ref|YP_004245085.1| - 1.8e-28 100.0 0.0 3.4e-24 86.0 0.0 2.0 2 0 0 2 2 2 2 Enoyl-CoA hydratase/isomerase ABC_transp_aux PF09822.9 gi|325968893|ref|YP_004245085.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 ABC-type uncharacterized transport system Amidohydro_2 PF04909.14 gi|325968894|ref|YP_004245086.1| - 1.6e-18 67.5 0.0 3.9e-18 66.2 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|325968894|ref|YP_004245086.1| - 0.025 13.9 0.0 0.056 12.8 0.0 1.5 1 0 0 1 1 1 0 TatD related DNase Lactamase_B PF00753.27 gi|325968895|ref|YP_004245087.1| - 3.9e-07 30.3 0.0 4.1e-07 30.2 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily AMP-binding PF00501.28 gi|325968896|ref|YP_004245088.1| - 3.9e-80 269.5 0.0 4.6e-80 269.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325968896|ref|YP_004245088.1| - 6.8e-21 75.0 0.1 1.2e-20 74.2 0.1 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Methyltransf_11 PF08241.12 gi|325968897|ref|YP_004245089.1| - 2e-14 54.0 0.0 3.3e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968897|ref|YP_004245089.1| - 2.1e-13 50.8 0.0 3.5e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|325968897|ref|YP_004245089.1| - 8.7e-10 39.2 0.0 1.8e-09 38.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325968897|ref|YP_004245089.1| - 2.9e-09 37.0 0.0 4.1e-09 36.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325968897|ref|YP_004245089.1| - 0.00029 20.7 0.1 0.0014 18.4 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|325968897|ref|YP_004245089.1| - 0.0011 18.9 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|325968897|ref|YP_004245089.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family FtsJ PF01728.19 gi|325968897|ref|YP_004245089.1| - 0.023 14.8 0.0 0.39 10.8 0.0 2.0 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.11 gi|325968897|ref|YP_004245089.1| - 0.03 13.3 0.0 0.72 8.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1698) SWIM PF04434.17 gi|325968900|ref|YP_004245092.1| - 0.005 16.5 0.1 0.0088 15.7 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger DUF5634_N PF18672.1 gi|325968900|ref|YP_004245092.1| - 0.044 13.5 0.0 0.059 13.1 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5634) Lar_restr_allev PF14354.6 gi|325968901|ref|YP_004245093.1| - 1.5e-05 25.2 0.0 1.9e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|325968901|ref|YP_004245093.1| - 5.2e-05 22.7 2.2 7.8e-05 22.1 2.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27 PF01599.19 gi|325968901|ref|YP_004245093.1| - 0.0014 18.7 0.3 0.0022 18.1 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S27a DNA_ligase_ZBD PF03119.16 gi|325968901|ref|YP_004245093.1| - 0.0016 18.4 1.3 0.003 17.5 1.3 1.5 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Auto_anti-p27 PF06677.12 gi|325968901|ref|YP_004245093.1| - 0.005 17.0 0.7 0.0073 16.4 0.7 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.11 gi|325968901|ref|YP_004245093.1| - 0.0093 15.6 1.2 0.086 12.5 1.2 2.0 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|325968901|ref|YP_004245093.1| - 0.015 14.7 1.2 0.023 14.0 1.2 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger Nudix_N_2 PF14803.6 gi|325968901|ref|YP_004245093.1| - 0.019 14.9 0.7 1.8 8.6 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1 PF03811.13 gi|325968901|ref|YP_004245093.1| - 0.023 14.4 0.2 6.3 6.6 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Elf1 PF05129.13 gi|325968901|ref|YP_004245093.1| - 0.031 14.3 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.11 gi|325968901|ref|YP_004245093.1| - 0.08 12.9 0.2 0.12 12.4 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|325968901|ref|YP_004245093.1| - 0.094 12.2 4.4 2.3 7.7 0.5 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com YhfH PF14149.6 gi|325968901|ref|YP_004245093.1| - 0.1 12.6 1.2 0.17 11.9 1.2 1.4 1 0 0 1 1 1 0 YhfH-like protein zf-Mss51 PF13824.6 gi|325968901|ref|YP_004245093.1| - 0.12 12.4 1.0 7.4 6.7 0.1 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|325968901|ref|YP_004245093.1| - 0.14 11.9 2.3 6.1 6.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|325968901|ref|YP_004245093.1| - 0.2 11.7 1.3 2.4 8.3 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|325968901|ref|YP_004245093.1| - 0.22 11.7 1.7 5.3 7.2 0.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|325968901|ref|YP_004245093.1| - 0.24 11.4 3.6 7 6.7 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Inositol_P PF00459.25 gi|325968902|ref|YP_004245094.1| - 8.2e-17 61.6 0.0 5.5e-16 58.9 0.0 1.8 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|325968902|ref|YP_004245094.1| - 0.0019 17.7 0.0 0.0032 17.0 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Metallophos PF00149.28 gi|325968903|ref|YP_004245095.1| - 4.9e-07 30.4 1.4 8.5e-06 26.4 1.4 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|325968903|ref|YP_004245095.1| - 5.7e-06 26.6 0.0 0.00063 20.0 0.0 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|325968903|ref|YP_004245095.1| - 4.8e-05 22.8 1.0 0.32 10.3 0.2 2.8 2 1 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily ATPase_2 PF01637.18 gi|325968904|ref|YP_004245096.1| - 0.11 12.4 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea CRISPR_Cas6 PF10040.9 gi|325968905|ref|YP_004245097.1| - 9.8e-11 42.2 0.1 1.7e-10 41.4 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 HD PF01966.22 gi|325968906|ref|YP_004245098.1| - 5.4e-06 26.6 0.2 9.4e-06 25.9 0.2 1.6 1 1 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|325968906|ref|YP_004245098.1| - 1.3e-05 25.5 0.0 1.6e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|325968906|ref|YP_004245098.1| - 0.066 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 HDOD domain Helicase_C PF00271.31 gi|325968907|ref|YP_004245099.1| - 4.8e-14 52.6 0.3 2.2e-13 50.5 0.2 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|325968907|ref|YP_004245099.1| - 2e-10 40.7 0.0 4.9e-08 32.9 0.0 2.8 2 2 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|325968907|ref|YP_004245099.1| - 1.8e-07 31.3 0.0 4.7e-05 23.5 0.0 2.5 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DevR PF01905.16 gi|325968910|ref|YP_004245102.1| - 3.6e-67 226.3 0.0 4.4e-67 226.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Orthopox_B11R PF07033.11 gi|325968910|ref|YP_004245102.1| - 0.012 15.4 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 Orthopoxvirus B11R protein Penicillinase_R PF03965.16 gi|325968912|ref|YP_004245104.1| - 0.021 15.1 0.1 0.041 14.2 0.1 1.4 1 0 0 1 1 1 0 Penicillinase repressor Rio2_N PF09202.11 gi|325968912|ref|YP_004245104.1| - 0.13 12.5 0.3 0.26 11.5 0.3 1.5 1 0 0 1 1 1 0 Rio2, N-terminal Endotoxin_N PF03945.14 gi|325968912|ref|YP_004245104.1| - 0.13 12.0 0.0 0.27 10.9 0.0 1.6 1 1 0 1 1 1 0 delta endotoxin, N-terminal domain Replic_Relax PF13814.6 gi|325968912|ref|YP_004245104.1| - 0.16 12.0 0.0 0.25 11.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Cas_Cas4 PF01930.17 gi|325968913|ref|YP_004245105.1| - 6e-16 59.0 2.1 8.4e-16 58.5 2.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|325968913|ref|YP_004245105.1| - 5.5e-11 42.9 0.3 1.5e-10 41.4 0.1 1.6 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Csa1 PF06023.12 gi|325968913|ref|YP_004245105.1| - 0.0035 16.7 0.5 0.0063 15.9 0.2 1.5 1 1 0 1 1 1 1 CRISPR-associated exonuclease Csa1 DUF2704 PF10866.8 gi|325968913|ref|YP_004245105.1| - 0.028 14.3 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2704) NERD PF08378.11 gi|325968913|ref|YP_004245105.1| - 0.05 14.1 0.4 0.083 13.4 0.4 1.5 1 0 0 1 1 1 0 Nuclease-related domain CRISPR_Cas2 PF09827.9 gi|325968914|ref|YP_004245106.1| - 2.5e-12 46.8 0.1 2.8e-12 46.7 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|325968915|ref|YP_004245107.1| - 1.9e-62 211.0 0.1 2.3e-62 210.7 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Csa1 PF06023.12 gi|325968916|ref|YP_004245108.1| - 5.5e-60 203.2 0.0 3.6e-58 197.2 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|325968916|ref|YP_004245108.1| - 0.0042 17.2 0.0 0.7 10.0 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 Dna2 PF08696.11 gi|325968916|ref|YP_004245108.1| - 0.029 14.2 0.0 0.067 13.0 0.0 1.6 1 0 0 1 1 1 0 DNA replication factor Dna2 PIN PF01850.21 gi|325968918|ref|YP_004245110.1| - 1.3e-13 51.6 4.4 1.5e-13 51.3 4.4 1.1 1 0 0 1 1 1 1 PIN domain ATPase_2 PF01637.18 gi|325968919|ref|YP_004245111.1| - 3.6e-13 50.0 0.2 1.9e-12 47.6 0.1 2.2 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|325968919|ref|YP_004245111.1| - 3.8e-09 36.7 0.0 1.8e-08 34.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325968919|ref|YP_004245111.1| - 1.2e-05 25.6 0.0 3.3e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325968919|ref|YP_004245111.1| - 0.0058 17.0 0.1 0.023 15.1 0.0 2.0 3 0 0 3 3 3 1 AAA ATPase domain AAA PF00004.29 gi|325968919|ref|YP_004245111.1| - 0.0085 16.5 0.1 0.025 15.0 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|325968920|ref|YP_004245112.1| - 4e-45 153.7 0.1 4.5e-45 153.6 0.1 1.0 1 0 0 1 1 1 1 NTPase AAA PF00004.29 gi|325968920|ref|YP_004245112.1| - 4.4e-07 30.4 0.0 8.3e-07 29.5 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|325968920|ref|YP_004245112.1| - 5.6e-07 29.5 0.1 1.6e-06 28.0 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|325968920|ref|YP_004245112.1| - 5.3e-06 26.5 0.3 0.0043 17.0 0.0 2.6 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|325968920|ref|YP_004245112.1| - 2e-05 24.9 0.0 4.7e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325968920|ref|YP_004245112.1| - 2.1e-05 25.0 0.2 3.9e-05 24.1 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|325968920|ref|YP_004245112.1| - 3.3e-05 24.4 0.0 5.7e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF2478 PF10649.9 gi|325968920|ref|YP_004245112.1| - 6.1e-05 22.7 0.0 0.00012 21.7 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_28 PF13521.6 gi|325968920|ref|YP_004245112.1| - 0.00011 22.4 0.1 0.00054 20.3 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|325968920|ref|YP_004245112.1| - 0.00047 20.5 1.1 0.014 15.8 0.1 2.5 2 1 1 3 3 3 1 AAA domain AAA_17 PF13207.6 gi|325968920|ref|YP_004245112.1| - 0.0005 20.5 0.2 0.038 14.4 0.1 2.3 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|325968920|ref|YP_004245112.1| - 0.0005 20.0 0.0 0.00088 19.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain ATP_bind_1 PF03029.17 gi|325968920|ref|YP_004245112.1| - 0.0009 19.1 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|325968920|ref|YP_004245112.1| - 0.0012 19.0 0.0 0.0019 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|325968920|ref|YP_004245112.1| - 0.0017 18.1 0.0 0.0025 17.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|325968920|ref|YP_004245112.1| - 0.0021 18.2 0.1 0.0026 17.8 0.1 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase RuvB_N PF05496.12 gi|325968920|ref|YP_004245112.1| - 0.0022 17.8 0.2 0.027 14.2 0.0 2.3 2 1 1 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain cobW PF02492.19 gi|325968920|ref|YP_004245112.1| - 0.0041 16.7 0.1 0.0061 16.2 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|325968920|ref|YP_004245112.1| - 0.0068 16.3 0.0 0.014 15.3 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|325968920|ref|YP_004245112.1| - 0.0071 16.1 0.0 0.094 12.4 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein dUTPase_2 PF08761.11 gi|325968920|ref|YP_004245112.1| - 0.014 15.6 0.0 0.019 15.1 0.0 1.2 1 0 0 1 1 1 0 dUTPase MeaB PF03308.16 gi|325968920|ref|YP_004245112.1| - 0.016 14.2 0.6 0.025 13.6 0.6 1.4 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Sigma54_activat PF00158.26 gi|325968920|ref|YP_004245112.1| - 0.016 14.9 0.0 0.28 10.9 0.0 2.1 1 1 0 1 1 1 0 Sigma-54 interaction domain KdpD PF02702.17 gi|325968920|ref|YP_004245112.1| - 0.018 14.5 0.1 0.14 11.6 0.1 2.0 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain ATPase PF06745.13 gi|325968920|ref|YP_004245112.1| - 0.019 14.3 0.0 0.033 13.5 0.0 1.4 1 1 0 1 1 1 0 KaiC Viral_helicase1 PF01443.18 gi|325968920|ref|YP_004245112.1| - 0.02 14.6 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|325968920|ref|YP_004245112.1| - 0.024 13.9 0.0 0.053 12.7 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.6 gi|325968920|ref|YP_004245112.1| - 0.03 14.4 0.0 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|325968920|ref|YP_004245112.1| - 0.045 13.3 0.3 0.1 12.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|325968920|ref|YP_004245112.1| - 0.058 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Roc PF08477.13 gi|325968920|ref|YP_004245112.1| - 0.074 13.3 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DLIC PF05783.11 gi|325968920|ref|YP_004245112.1| - 0.077 11.8 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) KTI12 PF08433.10 gi|325968920|ref|YP_004245112.1| - 0.09 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_29 PF13555.6 gi|325968920|ref|YP_004245112.1| - 0.099 12.4 0.0 0.3 10.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|325968920|ref|YP_004245112.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|325968920|ref|YP_004245112.1| - 0.1 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|325968920|ref|YP_004245112.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) MutS_V PF00488.21 gi|325968920|ref|YP_004245112.1| - 0.13 12.2 0.0 8.1 6.4 0.0 2.3 2 0 0 2 2 2 0 MutS domain V FeoB_N PF02421.18 gi|325968920|ref|YP_004245112.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_7 PF12775.7 gi|325968920|ref|YP_004245112.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|325968920|ref|YP_004245112.1| - 0.14 11.8 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3341 PF11821.8 gi|325968922|ref|YP_004245114.1| - 0.5 10.0 5.8 0.65 9.6 5.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3341) DUF1514 PF07438.11 gi|325968922|ref|YP_004245114.1| - 10 6.1 8.6 10 6.0 1.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) PhoU PF01895.19 gi|325968923|ref|YP_004245115.1| - 2e-19 69.8 6.4 3.8e-15 56.1 0.7 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|325968923|ref|YP_004245115.1| - 2.2e-08 33.8 0.2 9.4e-08 31.8 0.0 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Methyltransf_11 PF08241.12 gi|325968924|ref|YP_004245116.1| - 1.1e-14 54.8 0.0 2.8e-13 50.3 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968924|ref|YP_004245116.1| - 3.1e-07 31.0 0.0 1e-06 29.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325968924|ref|YP_004245116.1| - 6.2e-07 29.4 0.0 1.1e-06 28.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|325968924|ref|YP_004245116.1| - 7e-07 28.8 0.0 1.2e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|325968924|ref|YP_004245116.1| - 0.00013 22.6 0.1 0.00031 21.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325968924|ref|YP_004245116.1| - 0.0004 20.2 0.0 0.00054 19.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|325968924|ref|YP_004245116.1| - 0.0051 16.7 0.0 0.016 15.1 0.0 1.6 1 1 1 2 2 2 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|325968924|ref|YP_004245116.1| - 0.016 13.8 0.0 0.043 12.4 0.0 1.7 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MerR_1 PF13411.6 gi|325968924|ref|YP_004245116.1| - 0.082 13.0 0.0 0.32 11.1 0.0 2.0 1 1 1 2 2 2 0 MerR HTH family regulatory protein MetW PF07021.12 gi|325968924|ref|YP_004245116.1| - 0.11 12.0 0.0 0.27 10.8 0.0 1.7 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0051 PF01458.17 gi|325968925|ref|YP_004245117.1| - 5.7e-31 107.9 0.1 7e-31 107.6 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) TyrRSs_C PF16714.5 gi|325968925|ref|YP_004245117.1| - 0.052 13.4 0.0 0.15 11.9 0.0 1.7 1 1 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain UPF0051 PF01458.17 gi|325968926|ref|YP_004245118.1| - 1.7e-63 214.2 0.0 2.4e-63 213.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|325968927|ref|YP_004245119.1| - 1.4e-60 204.7 0.0 1.7e-60 204.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|325968928|ref|YP_004245120.1| - 5.2e-22 78.8 0.0 7e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325968928|ref|YP_004245120.1| - 1.2e-10 41.7 0.2 6.3e-05 22.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968928|ref|YP_004245120.1| - 7.1e-07 28.9 0.0 0.035 13.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|325968928|ref|YP_004245120.1| - 0.00071 20.1 0.1 0.0011 19.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|325968928|ref|YP_004245120.1| - 0.0015 18.3 0.0 0.0035 17.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|325968928|ref|YP_004245120.1| - 0.002 18.3 0.0 0.0035 17.5 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_25 PF13481.6 gi|325968928|ref|YP_004245120.1| - 0.024 14.2 0.8 0.064 12.8 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|325968928|ref|YP_004245120.1| - 0.029 14.1 0.0 0.048 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|325968928|ref|YP_004245120.1| - 0.034 13.3 0.1 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_13 PF13166.6 gi|325968928|ref|YP_004245120.1| - 0.038 12.6 0.0 2 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|325968928|ref|YP_004245120.1| - 0.04 13.5 0.1 0.15 11.6 0.0 2.0 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain DUF5594 PF18057.1 gi|325968928|ref|YP_004245120.1| - 0.041 13.7 0.2 4.8 7.0 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF5594) AAA_16 PF13191.6 gi|325968928|ref|YP_004245120.1| - 0.042 14.2 0.0 0.052 13.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|325968928|ref|YP_004245120.1| - 0.055 13.4 0.0 0.067 13.1 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|325968928|ref|YP_004245120.1| - 0.085 13.1 0.1 0.21 11.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|325968928|ref|YP_004245120.1| - 0.099 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|325968928|ref|YP_004245120.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_28 PF13521.6 gi|325968928|ref|YP_004245120.1| - 0.14 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|325968928|ref|YP_004245120.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Amidohydro_1 PF01979.20 gi|325968929|ref|YP_004245121.1| - 3.2e-16 59.6 0.0 7.6e-16 58.3 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|325968929|ref|YP_004245121.1| - 6.9e-07 29.1 0.1 0.02 14.4 0.0 3.0 3 0 0 3 3 3 3 Amidohydrolase family MazE_antitoxin PF04014.18 gi|325968930|ref|YP_004245122.1| - 0.00051 19.9 0.5 0.082 12.9 0.0 2.7 3 1 0 3 3 3 2 Antidote-toxin recognition MazE, bacterial antitoxin LysE PF01810.18 gi|325968931|ref|YP_004245123.1| - 3.7e-31 108.1 19.6 4.2e-31 107.9 19.6 1.0 1 0 0 1 1 1 1 LysE type translocator Phtf-FEM1B_bdg PF12129.8 gi|325968931|ref|YP_004245123.1| - 0.068 13.0 2.4 0.13 12.1 2.4 1.4 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor ABC2_membrane_5 PF13346.6 gi|325968931|ref|YP_004245123.1| - 0.17 11.4 19.7 0.24 10.9 19.7 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein GATase PF00117.28 gi|325968932|ref|YP_004245124.1| - 1.1e-52 178.5 0.0 1.3e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|325968932|ref|YP_004245124.1| - 4.1e-15 56.1 0.1 8.3e-15 55.1 0.1 1.5 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.14 gi|325968932|ref|YP_004245124.1| - 0.2 11.2 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Chorismate_bind PF00425.18 gi|325968933|ref|YP_004245125.1| - 5.3e-88 294.9 0.0 6.4e-88 294.6 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|325968933|ref|YP_004245125.1| - 4.7e-06 26.9 0.0 0.00072 19.8 0.0 3.1 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|325968934|ref|YP_004245126.1| - 1.3e-24 87.1 0.0 1.5e-24 86.8 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.21 gi|325968935|ref|YP_004245127.1| - 1.8e-79 266.9 0.0 2.4e-79 266.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|325968935|ref|YP_004245127.1| - 4.4e-11 42.5 0.3 1.9e-10 40.4 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PALP PF00291.25 gi|325968936|ref|YP_004245128.1| - 7.8e-47 160.1 0.1 9.1e-47 159.9 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|325968937|ref|YP_004245129.1| - 5.8e-25 87.6 0.1 1e-24 86.8 0.1 1.3 1 1 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.17 gi|325968937|ref|YP_004245129.1| - 3.7e-05 23.3 0.0 7.6e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 PcrB family NanE PF04131.14 gi|325968937|ref|YP_004245129.1| - 0.00023 20.4 0.1 0.00042 19.5 0.1 1.4 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.21 gi|325968937|ref|YP_004245129.1| - 0.0022 17.5 0.1 0.0043 16.5 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein IMPDH PF00478.25 gi|325968937|ref|YP_004245129.1| - 0.0081 15.2 0.2 0.012 14.7 0.2 1.1 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|325968937|ref|YP_004245129.1| - 0.035 13.5 0.1 0.065 12.7 0.1 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|325968937|ref|YP_004245129.1| - 0.045 12.9 0.0 0.067 12.3 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase IGPS PF00218.21 gi|325968938|ref|YP_004245130.1| - 2.2e-49 167.9 0.0 2.6e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|325968938|ref|YP_004245130.1| - 0.0013 18.3 0.3 0.0021 17.6 0.3 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|325968938|ref|YP_004245130.1| - 0.0017 17.6 0.0 0.0036 16.6 0.0 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase NanE PF04131.14 gi|325968938|ref|YP_004245130.1| - 0.0046 16.2 0.1 0.0081 15.4 0.1 1.3 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|325968938|ref|YP_004245130.1| - 0.022 13.8 0.2 0.029 13.4 0.2 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase POR PF01558.18 gi|325968939|ref|YP_004245131.1| - 8.4e-12 45.5 0.0 8.5e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase EPSP_synthase PF00275.20 gi|325968940|ref|YP_004245132.1| - 1e-75 255.0 0.0 1.2e-75 254.8 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Transketolase_N PF00456.21 gi|325968941|ref|YP_004245133.1| - 1.2e-36 126.4 0.0 1.9e-36 125.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain Transket_pyr PF02779.24 gi|325968941|ref|YP_004245133.1| - 1.4e-34 119.4 0.0 1.6e-33 115.9 0.0 2.4 3 0 0 3 3 3 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|325968941|ref|YP_004245133.1| - 1e-21 77.1 0.0 1.8e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|325968941|ref|YP_004245133.1| - 1.9e-07 31.0 0.5 1.3e-05 25.1 0.2 3.4 3 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|325968941|ref|YP_004245133.1| - 5.7e-07 29.0 0.1 9.4e-05 21.7 0.0 2.4 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase PFOR_II PF17147.4 gi|325968941|ref|YP_004245133.1| - 1.5e-05 25.2 0.0 4.1e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|325968941|ref|YP_004245133.1| - 0.013 14.5 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Radical_SAM PF04055.21 gi|325968941|ref|YP_004245133.1| - 0.16 12.3 0.0 2.1 8.7 0.0 2.5 2 0 0 2 2 2 0 Radical SAM superfamily GHMP_kinases_N PF00288.26 gi|325968942|ref|YP_004245134.1| - 9.1e-12 45.0 2.3 1.4e-11 44.5 1.5 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|325968942|ref|YP_004245134.1| - 0.0012 19.1 0.5 0.0048 17.2 0.1 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal DHquinase_I PF01487.15 gi|325968943|ref|YP_004245135.1| - 7.8e-12 45.9 0.0 2.1e-11 44.5 0.0 1.6 1 1 0 1 1 1 1 Type I 3-dehydroquinase Shikimate_dh_N PF08501.11 gi|325968944|ref|YP_004245136.1| - 1.1e-24 86.5 0.0 1.7e-24 85.8 0.0 1.4 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|325968944|ref|YP_004245136.1| - 3e-08 33.8 0.0 5.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|325968944|ref|YP_004245136.1| - 0.00031 21.0 0.0 0.049 13.9 0.0 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain SDH_C PF18317.1 gi|325968944|ref|YP_004245136.1| - 0.026 14.3 0.0 0.056 13.2 0.0 1.6 1 0 0 1 1 1 0 Shikimate 5'-dehydrogenase C-terminal domain Pyr_redox PF00070.27 gi|325968944|ref|YP_004245136.1| - 0.042 14.4 0.0 0.77 10.4 0.1 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|325968944|ref|YP_004245136.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DHQ_synthase PF01761.20 gi|325968945|ref|YP_004245137.1| - 2.2e-79 266.3 0.0 3e-79 265.9 0.0 1.2 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|325968945|ref|YP_004245137.1| - 3.5e-07 30.2 0.0 6.2e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|325968945|ref|YP_004245137.1| - 0.012 14.5 0.4 0.059 12.2 0.3 2.0 2 1 0 2 2 2 0 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.20 gi|325968946|ref|YP_004245138.1| - 4.5e-74 248.8 0.0 5.5e-74 248.5 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|325968946|ref|YP_004245138.1| - 2.6e-06 27.1 0.0 2.2e-05 24.0 0.0 2.1 1 1 0 1 1 1 1 NeuB family PDH PF02153.17 gi|325968947|ref|YP_004245139.1| - 1.5e-17 63.5 0.0 2.7e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.21 gi|325968947|ref|YP_004245139.1| - 1.9e-16 60.2 0.1 3.5e-16 59.3 0.1 1.5 1 0 0 1 1 1 1 Chorismate mutase type II Rossmann-like PF10727.9 gi|325968947|ref|YP_004245139.1| - 0.061 13.2 0.2 0.13 12.1 0.2 1.6 1 0 0 1 1 1 0 Rossmann-like domain Death PF00531.22 gi|325968948|ref|YP_004245140.1| - 0.15 12.2 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Death domain Chorismate_synt PF01264.21 gi|325968949|ref|YP_004245141.1| - 1.1e-116 389.2 0.0 1.2e-116 389.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Pribosyltran PF00156.27 gi|325968951|ref|YP_004245143.1| - 3.3e-26 91.7 0.0 4.2e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|325968951|ref|YP_004245143.1| - 0.0025 17.3 0.0 0.0035 16.8 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|325968951|ref|YP_004245143.1| - 0.0025 17.9 0.0 0.0039 17.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain Aldedh PF00171.22 gi|325968951|ref|YP_004245143.1| - 0.13 10.8 0.0 0.16 10.4 0.0 1.1 1 0 0 1 1 1 0 Aldehyde dehydrogenase family GMP_synt_C PF00958.22 gi|325968952|ref|YP_004245144.1| - 3.1e-19 68.8 1.7 1.2e-14 54.1 0.1 3.1 2 1 1 3 3 3 2 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|325968952|ref|YP_004245144.1| - 6.2e-11 41.9 0.0 2.6e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.20 gi|325968952|ref|YP_004245144.1| - 5.2e-07 29.6 0.0 7.9e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|325968952|ref|YP_004245144.1| - 0.00044 19.8 0.0 0.83 9.1 0.0 2.2 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|325968952|ref|YP_004245144.1| - 0.0066 16.1 0.0 0.055 13.0 0.0 2.4 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|325968952|ref|YP_004245144.1| - 0.016 14.0 0.0 1.5 7.5 0.0 2.1 2 0 0 2 2 2 0 tRNA methyl transferase GATase PF00117.28 gi|325968953|ref|YP_004245145.1| - 8.5e-31 107.2 0.0 1e-30 106.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|325968953|ref|YP_004245145.1| - 3e-11 43.5 1.1 6.1e-09 35.9 1.5 2.8 1 1 1 2 2 2 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|325968953|ref|YP_004245145.1| - 0.065 13.0 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family AA_permease_2 PF13520.6 gi|325968954|ref|YP_004245146.1| - 2.1e-19 69.7 66.1 2.6e-19 69.4 66.1 1.1 1 0 0 1 1 1 1 Amino acid permease Amidohydro_1 PF01979.20 gi|325968955|ref|YP_004245147.1| - 4.8e-30 105.0 0.0 6.1e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|325968955|ref|YP_004245147.1| - 2.8e-05 23.8 0.1 0.061 12.8 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family TauE PF01925.19 gi|325968956|ref|YP_004245148.1| - 3.8e-40 138.0 23.7 3.8e-40 138.0 23.7 2.0 2 0 0 2 2 2 2 Sulfite exporter TauE/SafE DUF1634 PF07843.11 gi|325968957|ref|YP_004245149.1| - 5.3e-28 97.1 9.1 6.6e-28 96.8 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) EamA PF00892.20 gi|325968958|ref|YP_004245150.1| - 8.7e-19 68.0 48.3 1.3e-14 54.5 18.5 2.7 2 1 0 2 2 2 2 EamA-like transporter family MFS_1 PF07690.16 gi|325968959|ref|YP_004245151.1| - 8.9e-28 97.2 42.2 8.9e-28 97.2 42.2 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily Thermopsin PF05317.11 gi|325968960|ref|YP_004245152.1| - 7.4e-72 241.9 7.5 7.4e-72 241.9 7.5 2.5 3 0 0 3 3 3 1 Thermopsin DUF996 PF06195.13 gi|325968961|ref|YP_004245153.1| - 2.8e-35 121.5 23.2 7.2e-34 117.0 21.3 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF996) MFS_1_like PF12832.7 gi|325968961|ref|YP_004245153.1| - 0.029 13.2 7.9 0.053 12.4 7.9 1.5 1 1 0 1 1 1 0 MFS_1 like family DUF2975 PF11188.8 gi|325968961|ref|YP_004245153.1| - 0.18 11.7 14.3 0.18 11.7 8.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) DUF973 PF06157.11 gi|325968961|ref|YP_004245153.1| - 0.25 10.4 24.0 2.5 7.1 8.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF973) Cation_ATPase_C PF00689.21 gi|325968961|ref|YP_004245153.1| - 0.85 9.3 13.9 0.87 9.3 10.4 2.0 1 1 1 2 2 2 0 Cation transporting ATPase, C-terminus Ni_hydr_CYTB PF01292.20 gi|325968961|ref|YP_004245153.1| - 5.5 6.6 13.3 49 3.5 13.3 2.1 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 tRNA_int_endo PF01974.17 gi|325968962|ref|YP_004245154.1| - 8.5e-24 83.4 0.1 1.3e-23 82.8 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|325968962|ref|YP_004245154.1| - 6.3e-19 67.4 0.1 1e-18 66.8 0.1 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|325968962|ref|YP_004245154.1| - 0.062 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 tRNA-splicing endonuclease subunit sen54 N-term CDC48_N PF02359.18 gi|325968963|ref|YP_004245155.1| - 0.00017 21.7 0.3 0.063 13.5 0.1 2.1 1 1 1 2 2 2 2 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.21 gi|325968963|ref|YP_004245155.1| - 0.012 15.6 1.3 0.63 10.1 0.3 2.1 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain TT_ORF1 PF02956.14 gi|325968963|ref|YP_004245155.1| - 0.14 10.8 0.8 0.17 10.5 0.8 1.1 1 0 0 1 1 1 0 TT viral orf 1 zf-B_box PF00643.24 gi|325968964|ref|YP_004245156.1| - 0.00019 21.5 22.2 0.0033 17.5 2.0 3.9 3 1 1 4 4 4 3 B-box zinc finger FYVE PF01363.21 gi|325968964|ref|YP_004245156.1| - 0.21 11.8 31.4 1.2e+04 -3.5 31.3 3.8 1 1 0 1 1 1 0 FYVE zinc finger Transp_Tc5_C PF04236.15 gi|325968964|ref|YP_004245156.1| - 6 7.3 20.8 26 5.3 7.6 3.1 1 1 1 2 2 2 0 Tc5 transposase C-terminal domain Prok-RING_2 PF14445.6 gi|325968964|ref|YP_004245156.1| - 7.9 6.7 25.1 0.17 12.1 12.2 2.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 CBS PF00571.28 gi|325968965|ref|YP_004245157.1| - 3.1e-29 101.2 1.6 1.8e-13 50.7 0.2 2.8 2 0 0 2 2 2 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|325968965|ref|YP_004245157.1| - 1.4e-26 92.0 0.2 2.7e-26 91.0 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|325968965|ref|YP_004245157.1| - 1.8e-09 37.8 0.0 4.6e-09 36.5 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|325968965|ref|YP_004245157.1| - 2.8e-09 36.8 0.0 1.7e-08 34.2 0.0 2.3 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|325968965|ref|YP_004245157.1| - 1.4e-05 24.9 0.0 5.9e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|325968965|ref|YP_004245157.1| - 0.00045 20.0 0.1 0.0012 18.6 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|325968965|ref|YP_004245157.1| - 0.00078 19.9 0.0 0.0018 18.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|325968965|ref|YP_004245157.1| - 0.0012 18.6 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|325968965|ref|YP_004245157.1| - 0.0014 18.8 0.1 0.004 17.3 0.1 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|325968965|ref|YP_004245157.1| - 0.003 17.1 0.1 0.013 15.1 0.1 2.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|325968965|ref|YP_004245157.1| - 0.0048 17.2 0.1 0.034 14.5 0.0 2.3 3 0 0 3 3 2 1 FaeA-like protein GntR PF00392.21 gi|325968965|ref|YP_004245157.1| - 0.031 13.9 0.0 0.077 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|325968965|ref|YP_004245157.1| - 0.038 13.7 0.2 0.33 10.7 0.1 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 Phage_terminase PF10668.9 gi|325968965|ref|YP_004245157.1| - 0.054 13.5 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Phage terminase small subunit HTH_IclR PF09339.10 gi|325968965|ref|YP_004245157.1| - 0.1 12.4 0.0 0.34 10.7 0.0 2.0 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|325968965|ref|YP_004245157.1| - 0.12 12.6 0.0 0.38 11.0 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|325968965|ref|YP_004245157.1| - 0.16 12.1 0.0 0.59 10.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain PALP PF00291.25 gi|325968966|ref|YP_004245158.1| - 8.5e-23 81.2 0.7 4.6e-19 68.9 0.7 3.1 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.6 gi|325968966|ref|YP_004245158.1| - 0.0024 17.5 3.3 0.0041 16.8 3.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain TrmB PF01978.19 gi|325968966|ref|YP_004245158.1| - 0.0077 16.1 0.0 0.043 13.7 0.1 2.2 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|325968966|ref|YP_004245158.1| - 0.035 14.4 0.0 0.063 13.6 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor DZR PF12773.7 gi|325968966|ref|YP_004245158.1| - 0.25 11.4 1.2 0.42 10.7 1.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zn-ribbon_14 PF16503.5 gi|325968966|ref|YP_004245158.1| - 0.28 10.7 0.7 0.53 9.8 0.7 1.5 1 0 0 1 1 1 0 Zinc-ribbon DUF87 PF01935.17 gi|325968967|ref|YP_004245159.1| - 1.6e-35 123.3 0.1 4.3e-35 121.9 0.1 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|325968967|ref|YP_004245159.1| - 8.9e-06 24.8 0.0 0.00046 19.2 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|325968967|ref|YP_004245159.1| - 0.00011 21.6 0.0 0.23 10.8 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family T4SS-DNA_transf PF02534.14 gi|325968967|ref|YP_004245159.1| - 0.00028 19.8 0.0 0.00041 19.3 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_10 PF12846.7 gi|325968967|ref|YP_004245159.1| - 0.00031 19.8 0.6 0.0093 14.9 1.1 2.6 2 1 0 2 2 2 1 AAA-like domain ResIII PF04851.15 gi|325968967|ref|YP_004245159.1| - 0.00033 20.7 0.0 0.0054 16.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF853 PF05872.12 gi|325968967|ref|YP_004245159.1| - 0.0013 17.4 0.0 0.4 9.2 0.0 2.4 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.6 gi|325968967|ref|YP_004245159.1| - 0.011 16.0 0.1 0.61 10.4 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|325968967|ref|YP_004245159.1| - 0.028 14.9 0.1 0.22 11.9 0.0 2.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) DUF2782 PF11191.8 gi|325968967|ref|YP_004245159.1| - 0.043 14.0 0.1 0.1 12.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2782) CbiA PF01656.23 gi|325968967|ref|YP_004245159.1| - 0.05 13.7 0.6 0.1 12.6 0.1 1.8 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.29 gi|325968967|ref|YP_004245159.1| - 0.051 13.3 0.0 0.3 10.8 0.0 2.2 3 0 0 3 3 3 0 DEAD/DEAH box helicase Metallophos PF00149.28 gi|325968968|ref|YP_004245160.1| - 7.9e-12 46.1 0.2 1.3e-11 45.4 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|325968968|ref|YP_004245160.1| - 1.2e-09 38.5 0.0 3.4e-09 37.1 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.19 gi|325968969|ref|YP_004245161.1| - 2.7e-24 85.9 0.1 2.2e-12 46.9 0.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|325968969|ref|YP_004245161.1| - 3.7e-20 73.3 9.3 3.7e-20 73.3 9.3 5.1 3 1 1 4 4 3 1 AAA domain AAA_15 PF13175.6 gi|325968969|ref|YP_004245161.1| - 2.4e-14 53.8 14.2 3.6e-07 30.2 10.3 4.2 3 1 0 3 3 3 2 AAA ATPase domain AAA_13 PF13166.6 gi|325968969|ref|YP_004245161.1| - 1.4e-12 47.1 34.4 1.4e-05 24.0 1.6 5.4 2 1 2 4 4 4 3 AAA domain Baculo_PEP_C PF04513.12 gi|325968969|ref|YP_004245161.1| - 1.7e-10 41.1 21.2 0.035 14.2 0.1 5.9 3 2 3 6 6 6 4 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_21 PF13304.6 gi|325968969|ref|YP_004245161.1| - 6.3e-10 39.3 18.4 7.3e-05 22.7 8.4 3.5 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system BLOC1_2 PF10046.9 gi|325968969|ref|YP_004245161.1| - 2.6e-08 34.0 37.9 0.03 14.6 10.6 7.7 3 3 6 9 9 9 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran PF00005.27 gi|325968969|ref|YP_004245161.1| - 9.1e-07 29.5 13.0 0.018 15.6 0.1 4.9 3 2 0 3 3 3 2 ABC transporter NPV_P10 PF05531.12 gi|325968969|ref|YP_004245161.1| - 1.1e-05 25.8 19.0 0.055 13.9 2.0 7.6 3 3 4 7 7 7 2 Nucleopolyhedrovirus P10 protein Rad50_zn_hook PF04423.14 gi|325968969|ref|YP_004245161.1| - 1.2e-05 25.0 0.1 1.2e-05 25.0 0.1 7.3 8 2 1 9 9 6 1 Rad50 zinc hook motif AAA_29 PF13555.6 gi|325968969|ref|YP_004245161.1| - 1.9e-05 24.3 0.0 3.4e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|325968969|ref|YP_004245161.1| - 2.3e-05 23.4 60.4 0.14 11.0 1.7 5.8 2 2 4 7 7 7 6 Spc7 kinetochore protein Atg14 PF10186.9 gi|325968969|ref|YP_004245161.1| - 0.00014 21.0 1.6 0.00014 21.0 1.6 4.4 1 1 4 5 5 5 1 Vacuolar sorting 38 and autophagy-related subunit 14 APG6_N PF17675.1 gi|325968969|ref|YP_004245161.1| - 0.00016 22.2 70.2 0.085 13.4 11.0 6.4 2 2 2 4 4 4 2 Apg6 coiled-coil region Fez1 PF06818.15 gi|325968969|ref|YP_004245161.1| - 0.00024 21.6 57.7 0.015 15.7 20.8 4.3 1 1 3 4 4 4 2 Fez1 IFT57 PF10498.9 gi|325968969|ref|YP_004245161.1| - 0.00079 18.5 39.9 0.055 12.4 8.9 4.2 2 2 2 4 4 4 3 Intra-flagellar transport protein 57 DUF4407 PF14362.6 gi|325968969|ref|YP_004245161.1| - 0.001 18.5 26.4 3.6 6.9 0.0 4.3 1 1 1 4 4 4 0 Domain of unknown function (DUF4407) DUF948 PF06103.11 gi|325968969|ref|YP_004245161.1| - 0.0018 18.5 14.7 1.9 8.8 0.0 7.2 5 2 3 8 8 6 1 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 gi|325968969|ref|YP_004245161.1| - 0.0086 15.6 4.2 0.0086 15.6 4.2 4.7 1 1 4 5 5 5 1 Mechanosensitive ion channel porin domain AAA_27 PF13514.6 gi|325968969|ref|YP_004245161.1| - 0.011 15.3 0.0 0.011 15.3 0.0 4.9 4 1 2 6 6 6 0 AAA domain AAA_30 PF13604.6 gi|325968969|ref|YP_004245161.1| - 0.021 14.6 0.4 0.33 10.7 0.1 3.1 2 1 0 2 2 2 0 AAA domain GAS PF13851.6 gi|325968969|ref|YP_004245161.1| - 0.024 14.0 59.0 0.078 12.3 9.7 6.0 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding Sec34 PF04136.15 gi|325968969|ref|YP_004245161.1| - 0.028 14.3 22.6 0.35 10.7 6.0 5.2 2 2 2 5 5 5 0 Sec34-like family DUF641 PF04859.12 gi|325968969|ref|YP_004245161.1| - 0.028 14.7 0.1 0.028 14.7 0.1 7.0 3 2 3 7 7 5 0 Plant protein of unknown function (DUF641) AAA PF00004.29 gi|325968969|ref|YP_004245161.1| - 0.028 14.8 0.0 0.27 11.7 0.0 2.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325968969|ref|YP_004245161.1| - 0.034 14.5 0.0 0.034 14.5 0.0 4.3 2 1 0 2 2 1 0 AAA ATPase domain NACHT PF05729.12 gi|325968969|ref|YP_004245161.1| - 0.049 13.5 0.1 0.85 9.5 0.0 2.9 2 1 0 2 2 2 0 NACHT domain OmpH PF03938.14 gi|325968969|ref|YP_004245161.1| - 0.055 13.8 30.9 0.4 11.0 4.9 5.9 2 2 3 5 5 4 0 Outer membrane protein (OmpH-like) FliD_N PF02465.18 gi|325968969|ref|YP_004245161.1| - 0.074 13.8 9.2 19 6.0 2.2 5.2 3 3 1 4 4 4 0 Flagellar hook-associated protein 2 N-terminus DHR10 PF18595.1 gi|325968969|ref|YP_004245161.1| - 0.093 12.8 73.3 0.71 10.0 16.2 6.7 2 2 5 7 7 6 0 Designed helical repeat protein 10 domain FlaC_arch PF05377.11 gi|325968969|ref|YP_004245161.1| - 0.13 12.7 58.6 0.31 11.5 1.0 10.6 4 4 7 11 11 11 0 Flagella accessory protein C (FlaC) Acetyltransf_16 PF05301.11 gi|325968969|ref|YP_004245161.1| - 0.19 11.5 0.6 2.7 7.7 0.2 3.0 2 1 1 3 3 2 0 GNAT acetyltransferase, Mec-17 DUF1664 PF07889.12 gi|325968969|ref|YP_004245161.1| - 0.23 11.5 30.7 1.2 9.2 3.3 7.1 2 2 6 8 8 7 0 Protein of unknown function (DUF1664) FlxA PF14282.6 gi|325968969|ref|YP_004245161.1| - 0.29 11.1 11.6 2.3 8.3 0.4 4.3 3 1 0 4 4 4 0 FlxA-like protein bZIP_1 PF00170.21 gi|325968969|ref|YP_004245161.1| - 0.34 11.0 0.1 0.34 11.0 0.1 8.9 7 1 2 9 9 8 0 bZIP transcription factor CENP-F_leu_zip PF10473.9 gi|325968969|ref|YP_004245161.1| - 0.36 10.8 77.2 0.12 12.4 5.0 6.6 2 2 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|325968969|ref|YP_004245161.1| - 0.41 10.9 75.9 0.4 10.9 6.0 5.6 2 2 3 5 5 5 0 Autophagy protein 16 (ATG16) Exonuc_VII_L PF02601.15 gi|325968969|ref|YP_004245161.1| - 0.61 9.6 43.6 0.6 9.6 13.4 4.1 1 1 1 3 3 3 0 Exonuclease VII, large subunit Laminin_II PF06009.12 gi|325968969|ref|YP_004245161.1| - 0.9 9.6 40.7 0.35 10.9 2.4 5.6 2 2 3 6 6 5 0 Laminin Domain II DUF2730 PF10805.8 gi|325968969|ref|YP_004245161.1| - 0.93 9.6 38.5 3.7 7.7 0.8 7.4 2 2 5 7 7 7 0 Protein of unknown function (DUF2730) DUF16 PF01519.16 gi|325968969|ref|YP_004245161.1| - 1.3 9.6 30.7 8 7.0 2.2 6.2 2 2 3 5 5 5 0 Protein of unknown function DUF16 KASH_CCD PF14662.6 gi|325968969|ref|YP_004245161.1| - 1.4 8.7 62.0 0.12 12.1 11.5 4.9 1 1 4 5 5 3 0 Coiled-coil region of CCDC155 or KASH PCRF PF03462.18 gi|325968969|ref|YP_004245161.1| - 1.4 8.7 39.1 1.8 8.4 1.1 5.6 2 2 2 4 4 3 0 PCRF domain Filament PF00038.21 gi|325968969|ref|YP_004245161.1| - 1.7 8.1 66.2 0.76 9.3 28.5 5.0 1 1 4 5 5 5 0 Intermediate filament protein TMF_TATA_bd PF12325.8 gi|325968969|ref|YP_004245161.1| - 2.5 8.3 76.8 2.2 8.5 16.9 7.8 1 1 6 7 7 7 0 TATA element modulatory factor 1 TATA binding Seryl_tRNA_N PF02403.22 gi|325968969|ref|YP_004245161.1| - 2.7 8.3 56.4 0.23 11.7 2.7 6.6 3 2 4 7 7 6 0 Seryl-tRNA synthetase N-terminal domain FapA PF03961.13 gi|325968969|ref|YP_004245161.1| - 2.8 6.4 46.5 0.64 8.6 1.8 5.2 1 1 5 6 6 6 0 Flagellar Assembly Protein A MAD PF05557.13 gi|325968969|ref|YP_004245161.1| - 2.9 6.1 63.6 0.12 10.7 35.5 2.9 2 2 0 2 2 2 0 Mitotic checkpoint protein TPR_MLP1_2 PF07926.12 gi|325968969|ref|YP_004245161.1| - 3.3 7.8 57.2 1 9.5 4.1 6.2 2 2 4 6 6 6 0 TPR/MLP1/MLP2-like protein HMMR_N PF15905.5 gi|325968969|ref|YP_004245161.1| - 3.4 7.1 53.2 0.14 11.6 0.5 4.3 2 2 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal PRKG1_interact PF15898.5 gi|325968969|ref|YP_004245161.1| - 3.4 8.6 64.0 0.24 12.3 8.3 6.7 1 1 5 6 6 6 0 cGMP-dependent protein kinase interacting domain BRE1 PF08647.11 gi|325968969|ref|YP_004245161.1| - 4.3 7.5 39.3 35 4.5 8.3 6.0 2 2 4 6 6 6 0 BRE1 E3 ubiquitin ligase AAA_11 PF13086.6 gi|325968969|ref|YP_004245161.1| - 4.4 7.0 0.0 4.4 7.0 0.0 4.6 2 1 0 2 2 1 0 AAA domain LOH1CR12 PF10158.9 gi|325968969|ref|YP_004245161.1| - 5 7.2 13.8 18 5.4 1.3 4.4 3 2 2 5 5 4 0 Tumour suppressor protein DUF3251 PF11622.8 gi|325968969|ref|YP_004245161.1| - 5.4 6.6 5.7 9.1 5.9 0.7 3.1 3 0 0 3 3 2 0 Protein of unknown function (DUF3251) AAA_33 PF13671.6 gi|325968969|ref|YP_004245161.1| - 5.5 7.1 6.9 4 7.6 0.0 3.1 3 1 0 3 3 2 0 AAA domain DUF4391 PF14335.6 gi|325968969|ref|YP_004245161.1| - 5.8 6.6 22.6 0.077 12.7 3.9 3.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4391) DUF4201 PF13870.6 gi|325968969|ref|YP_004245161.1| - 6.3 6.5 59.3 0.26 11.0 21.0 5.9 1 1 5 6 6 6 0 Domain of unknown function (DUF4201) AAA_22 PF13401.6 gi|325968969|ref|YP_004245161.1| - 8.9 6.6 10.2 2.9 8.1 0.0 4.0 4 1 0 4 4 3 0 AAA domain Succ_CoA_lig PF13607.6 gi|325968971|ref|YP_004245163.1| - 1.6e-46 157.5 1.5 7.8e-46 155.3 0.3 2.4 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|325968971|ref|YP_004245163.1| - 1.7e-22 80.1 0.8 1.6e-21 76.9 0.1 2.8 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|325968971|ref|YP_004245163.1| - 3.5e-12 46.8 0.1 2.5e-11 44.1 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|325968971|ref|YP_004245163.1| - 0.058 14.2 0.0 3.1 8.7 0.0 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Na_H_Exchanger PF00999.21 gi|325968972|ref|YP_004245164.1| - 6.7e-48 163.4 58.1 8.7e-48 163.0 58.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family YhfC PF10086.9 gi|325968973|ref|YP_004245165.1| - 5.2e-05 22.7 15.4 0.0043 16.4 15.2 2.7 1 1 0 1 1 1 1 YhfC intramembrane metalloprotease Vac7 PF12751.7 gi|325968973|ref|YP_004245165.1| - 3.3 7.0 3.7 5.1 6.4 3.7 1.2 1 0 0 1 1 1 0 Vacuolar segregation subunit 7 Voltage_CLC PF00654.20 gi|325968974|ref|YP_004245166.1| - 3.3e-68 230.5 35.2 4.5e-68 230.1 28.7 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel DUF485 PF04341.12 gi|325968974|ref|YP_004245166.1| - 1.7 8.6 6.1 0.3 11.0 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function, DUF485 PaREP1 PF05942.11 gi|325968975|ref|YP_004245167.1| - 5.9e-29 100.3 0.1 1.3e-28 99.2 0.0 1.5 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family Methyltransf_11 PF08241.12 gi|325968976|ref|YP_004245168.1| - 1.9e-10 41.2 0.0 2.8e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325968976|ref|YP_004245168.1| - 1.1e-08 35.6 0.0 1.6e-08 35.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325968976|ref|YP_004245168.1| - 0.00018 21.4 0.0 0.00022 21.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|325968976|ref|YP_004245168.1| - 0.0015 19.2 0.1 0.0025 18.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325968976|ref|YP_004245168.1| - 0.0033 17.3 0.0 0.004 17.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|325968976|ref|YP_004245168.1| - 0.029 14.0 0.2 0.049 13.2 0.2 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|325968976|ref|YP_004245168.1| - 0.18 11.5 0.6 0.23 11.2 0.6 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_24 PF13412.6 gi|325968977|ref|YP_004245169.1| - 1.9e-14 52.9 0.2 3.3e-14 52.1 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|325968977|ref|YP_004245169.1| - 4.1e-13 48.9 0.9 7.1e-13 48.2 0.3 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|325968977|ref|YP_004245169.1| - 4.2e-05 23.4 0.0 6.4e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.6 gi|325968977|ref|YP_004245169.1| - 8.2e-05 22.3 0.4 0.00036 20.2 0.2 2.1 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|325968977|ref|YP_004245169.1| - 0.00013 21.9 0.2 0.00019 21.5 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|325968977|ref|YP_004245169.1| - 0.00057 19.8 0.4 0.0016 18.4 0.1 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|325968977|ref|YP_004245169.1| - 0.00087 19.1 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|325968977|ref|YP_004245169.1| - 0.0021 17.7 0.0 0.0057 16.3 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HrcA_DNA-bdg PF03444.15 gi|325968977|ref|YP_004245169.1| - 0.0024 17.5 0.0 0.0033 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Sigma70_r4 PF04545.16 gi|325968977|ref|YP_004245169.1| - 0.003 17.1 0.1 0.008 15.7 0.1 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|325968977|ref|YP_004245169.1| - 0.0031 17.3 0.3 0.016 15.0 0.3 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|325968977|ref|YP_004245169.1| - 0.0035 17.3 0.0 0.0086 16.1 0.0 1.7 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_DeoR PF08220.12 gi|325968977|ref|YP_004245169.1| - 0.006 16.3 0.1 0.026 14.3 0.1 2.0 1 1 1 2 2 2 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|325968977|ref|YP_004245169.1| - 0.0089 16.2 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|325968977|ref|YP_004245169.1| - 0.0093 15.7 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain MarR PF01047.22 gi|325968977|ref|YP_004245169.1| - 0.011 15.7 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|325968977|ref|YP_004245169.1| - 0.013 15.8 0.0 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.6 gi|325968977|ref|YP_004245169.1| - 0.018 15.0 0.0 0.029 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|325968977|ref|YP_004245169.1| - 0.027 14.4 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|325968977|ref|YP_004245169.1| - 0.028 14.8 0.0 0.049 14.0 0.0 1.4 1 1 0 1 1 1 0 FaeA-like protein HTH_29 PF13551.6 gi|325968977|ref|YP_004245169.1| - 0.063 13.3 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Myb_DNA-bind_6 PF13921.6 gi|325968977|ref|YP_004245169.1| - 0.076 13.3 0.0 0.099 12.9 0.0 1.3 1 0 0 1 1 1 0 Myb-like DNA-binding domain HTH_30 PF13556.6 gi|325968977|ref|YP_004245169.1| - 0.086 12.6 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain ABC_tran PF00005.27 gi|325968978|ref|YP_004245170.1| - 8.2e-23 81.4 0.0 1.2e-22 80.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325968978|ref|YP_004245170.1| - 3.1e-12 46.9 0.7 3.2e-07 30.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325968978|ref|YP_004245170.1| - 0.00046 19.7 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|325968978|ref|YP_004245170.1| - 0.0038 17.4 0.0 0.02 15.1 0.0 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|325968978|ref|YP_004245170.1| - 0.015 15.6 0.0 0.033 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|325968978|ref|YP_004245170.1| - 0.023 15.1 0.5 0.05 14.0 0.5 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|325968978|ref|YP_004245170.1| - 0.064 13.7 0.2 0.1 13.1 0.2 1.2 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|325968978|ref|YP_004245170.1| - 0.091 12.4 0.0 0.11 12.1 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|325968978|ref|YP_004245170.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|325968978|ref|YP_004245170.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain SHS2_Rpb7-N PF03876.17 gi|325968980|ref|YP_004245172.1| - 2.4e-14 53.4 0.2 5.1e-14 52.4 0.2 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|325968980|ref|YP_004245172.1| - 1.4e-10 41.3 2.7 1.4e-10 41.3 2.7 2.3 2 1 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|325968980|ref|YP_004245172.1| - 0.013 15.7 0.0 0.019 15.2 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 SUI1 PF01253.22 gi|325968982|ref|YP_004245174.1| - 7.5e-16 58.4 0.3 1.3e-15 57.7 0.3 1.4 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|325968982|ref|YP_004245174.1| - 0.0038 17.5 0.4 0.0069 16.7 0.4 1.7 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) PNP_UDP_1 PF01048.20 gi|325968984|ref|YP_004245176.1| - 4.6e-37 127.5 0.0 5.2e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily SIS PF01380.22 gi|325968985|ref|YP_004245177.1| - 2.3e-40 137.5 0.5 7.1e-29 100.3 0.3 2.1 2 0 0 2 2 2 2 SIS domain SIS_2 PF13580.6 gi|325968985|ref|YP_004245177.1| - 0.00015 21.8 0.1 0.00088 19.3 0.1 2.2 2 0 0 2 2 2 1 SIS domain bact-PGI_C PF10432.9 gi|325968985|ref|YP_004245177.1| - 0.0065 16.5 0.0 0.017 15.1 0.0 1.8 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain NurA PF09376.10 gi|325968986|ref|YP_004245178.1| - 2.6e-09 37.1 0.0 4.4e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 NurA domain DUF853 PF05872.12 gi|325968987|ref|YP_004245179.1| - 1.5e-09 37.0 0.5 8.9e-05 21.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|325968987|ref|YP_004245179.1| - 2.8e-09 37.4 0.0 5.9e-09 36.4 0.0 1.6 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|325968987|ref|YP_004245179.1| - 6.4e-07 29.7 0.2 0.0013 19.0 0.0 2.6 2 1 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|325968987|ref|YP_004245179.1| - 2.3e-05 23.9 0.6 0.00014 21.3 0.1 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.29 gi|325968987|ref|YP_004245179.1| - 0.00013 22.3 0.7 0.13 12.7 0.1 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|325968987|ref|YP_004245179.1| - 0.00042 19.5 0.0 0.0008 18.5 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF2075 PF09848.9 gi|325968987|ref|YP_004245179.1| - 0.00048 19.5 0.3 0.37 10.0 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) TrwB_AAD_bind PF10412.9 gi|325968987|ref|YP_004245179.1| - 0.00076 18.5 0.0 0.0021 17.0 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.22 gi|325968987|ref|YP_004245179.1| - 0.00082 19.1 0.4 0.0017 18.0 0.4 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|325968987|ref|YP_004245179.1| - 0.0014 19.2 0.4 0.0043 17.6 0.1 2.0 2 0 0 2 2 1 1 AAA domain ABC_tran PF00005.27 gi|325968987|ref|YP_004245179.1| - 0.0017 18.8 0.0 0.004 17.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_25 PF13481.6 gi|325968987|ref|YP_004245179.1| - 0.0032 17.1 0.6 0.25 10.9 0.1 2.3 2 0 0 2 2 2 1 AAA domain Pox_A32 PF04665.12 gi|325968987|ref|YP_004245179.1| - 0.0037 16.8 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Poxvirus A32 protein HTH_23 PF13384.6 gi|325968987|ref|YP_004245179.1| - 0.0042 16.8 0.1 0.018 14.8 0.1 2.0 1 0 0 1 1 1 1 Homeodomain-like domain AAA_16 PF13191.6 gi|325968987|ref|YP_004245179.1| - 0.0044 17.4 0.2 0.016 15.6 0.1 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.7 gi|325968987|ref|YP_004245179.1| - 0.0047 15.9 0.4 0.15 10.9 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.12 gi|325968987|ref|YP_004245179.1| - 0.0048 16.8 0.2 0.0088 16.0 0.2 1.4 1 0 0 1 1 1 1 NACHT domain Zeta_toxin PF06414.12 gi|325968987|ref|YP_004245179.1| - 0.0048 16.2 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_7 PF12775.7 gi|325968987|ref|YP_004245179.1| - 0.0059 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_33 PF13671.6 gi|325968987|ref|YP_004245179.1| - 0.006 16.7 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|325968987|ref|YP_004245179.1| - 0.0061 16.3 0.1 1.7 8.4 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|325968987|ref|YP_004245179.1| - 0.0067 16.5 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit MeaB PF03308.16 gi|325968987|ref|YP_004245179.1| - 0.015 14.3 0.3 0.031 13.2 0.1 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|325968987|ref|YP_004245179.1| - 0.016 15.2 0.0 0.028 14.5 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zot PF05707.12 gi|325968987|ref|YP_004245179.1| - 0.017 14.7 0.1 0.051 13.2 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_29 PF13555.6 gi|325968987|ref|YP_004245179.1| - 0.018 14.8 0.1 0.034 13.9 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|325968987|ref|YP_004245179.1| - 0.022 15.0 0.2 0.062 13.5 0.2 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|325968987|ref|YP_004245179.1| - 0.025 14.6 0.5 0.65 10.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|325968987|ref|YP_004245179.1| - 0.035 13.7 0.4 0.076 12.6 0.2 1.7 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|325968987|ref|YP_004245179.1| - 0.037 13.9 0.3 0.065 13.1 0.3 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|325968987|ref|YP_004245179.1| - 0.037 13.8 0.1 0.06 13.1 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|325968987|ref|YP_004245179.1| - 0.05 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation CLP1_P PF16575.5 gi|325968987|ref|YP_004245179.1| - 0.05 13.4 0.1 0.085 12.6 0.1 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop FeoB_N PF02421.18 gi|325968987|ref|YP_004245179.1| - 0.057 13.0 0.2 0.1 12.2 0.2 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B HTH_Tnp_4 PF13613.6 gi|325968987|ref|YP_004245179.1| - 0.059 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease SRPRB PF09439.10 gi|325968987|ref|YP_004245179.1| - 0.075 12.5 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Mg_chelatase PF01078.21 gi|325968987|ref|YP_004245179.1| - 0.085 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|325968987|ref|YP_004245179.1| - 0.099 13.1 0.0 0.17 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|325968987|ref|YP_004245179.1| - 0.12 12.2 0.1 0.25 11.1 0.1 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|325968987|ref|YP_004245179.1| - 0.12 12.3 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE G-alpha PF00503.20 gi|325968987|ref|YP_004245179.1| - 0.15 11.2 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_14 PF13173.6 gi|325968987|ref|YP_004245179.1| - 0.15 12.1 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|325968987|ref|YP_004245179.1| - 0.16 11.7 0.3 0.43 10.3 0.1 1.7 2 0 0 2 2 1 0 AAA domain DUF3584 PF12128.8 gi|325968987|ref|YP_004245179.1| - 0.17 9.4 0.4 0.22 9.0 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) UvrD-helicase PF00580.21 gi|325968987|ref|YP_004245179.1| - 0.23 10.9 0.1 0.42 10.1 0.1 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain AAA_31 PF13614.6 gi|325968987|ref|YP_004245179.1| - 0.24 11.3 0.2 2.6 7.9 0.3 2.1 2 0 0 2 2 2 0 AAA domain Cas_APE2256 PF09651.10 gi|325968988|ref|YP_004245180.1| - 1.8e-16 60.3 0.0 2.6e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) DUF2689 PF10894.8 gi|325968988|ref|YP_004245180.1| - 0.22 11.3 0.3 0.93 9.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2689) Cas_DxTHG PF09455.10 gi|325968989|ref|YP_004245181.1| - 5.9e-16 59.0 0.0 2.3e-13 50.5 0.0 2.4 2 1 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family GP120 PF00516.18 gi|325968989|ref|YP_004245181.1| - 0.11 11.1 0.0 0.17 10.4 0.0 1.2 1 0 0 1 1 1 0 Envelope glycoprotein GP120 Cas_Cmr3 PF09700.10 gi|325968990|ref|YP_004245182.1| - 0.00043 19.8 0.0 0.047 13.1 0.0 2.2 1 1 1 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) Cas_Cas5d PF09704.10 gi|325968990|ref|YP_004245182.1| - 0.045 13.6 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) DUF3692 PF12469.8 gi|325968991|ref|YP_004245183.1| - 1.1e-26 93.3 0.0 2.3e-26 92.2 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein RAMPs PF03787.15 gi|325968992|ref|YP_004245184.1| - 5.2e-22 78.9 0.0 7.7e-22 78.4 0.0 1.3 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.10 gi|325968993|ref|YP_004245185.1| - 8.7e-08 32.5 0.2 5.4e-07 29.9 0.2 2.0 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) RAMPs PF03787.15 gi|325968994|ref|YP_004245186.1| - 2.3e-05 24.5 0.6 7.2e-05 22.9 0.6 1.9 1 1 0 1 1 1 1 RAMP superfamily Molydop_binding PF01568.21 gi|325968994|ref|YP_004245186.1| - 0.0084 16.1 0.1 0.083 12.9 0.1 2.2 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|325968994|ref|YP_004245186.1| - 0.026 14.7 1.4 0.05 13.8 0.5 2.0 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain RAMPs PF03787.15 gi|325968995|ref|YP_004245187.1| - 1.2e-07 32.0 0.1 1.4e-06 28.5 0.1 2.2 1 1 0 1 1 1 1 RAMP superfamily AAA_21 PF13304.6 gi|325968996|ref|YP_004245188.1| - 9.6e-17 61.7 0.2 2.8e-15 56.9 0.2 2.1 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|325968996|ref|YP_004245188.1| - 2.4e-12 47.3 0.0 7.3e-06 25.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|325968996|ref|YP_004245188.1| - 3.6e-12 47.2 0.0 4.8e-12 46.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|325968996|ref|YP_004245188.1| - 1.1e-10 41.3 0.2 1.9e-09 37.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|325968996|ref|YP_004245188.1| - 2.7e-06 27.5 0.5 0.048 13.6 0.0 2.6 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|325968996|ref|YP_004245188.1| - 7.5e-06 26.0 0.1 0.0077 16.2 0.0 2.6 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|325968996|ref|YP_004245188.1| - 8.7e-06 25.4 0.2 1.9e-05 24.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|325968996|ref|YP_004245188.1| - 1.8e-05 25.1 0.0 0.0003 21.2 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325968996|ref|YP_004245188.1| - 0.0001 22.7 0.0 0.00065 20.1 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|325968996|ref|YP_004245188.1| - 0.00015 22.1 0.1 0.0078 16.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|325968996|ref|YP_004245188.1| - 0.00017 21.2 0.0 0.00025 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|325968996|ref|YP_004245188.1| - 0.00025 21.6 0.1 0.00047 20.7 0.1 1.4 1 1 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|325968996|ref|YP_004245188.1| - 0.00064 19.5 0.1 0.0013 18.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|325968996|ref|YP_004245188.1| - 0.0018 18.3 0.0 0.097 12.6 0.0 2.6 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|325968996|ref|YP_004245188.1| - 0.0018 18.8 0.1 0.005 17.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain RNA_helicase PF00910.22 gi|325968996|ref|YP_004245188.1| - 0.003 17.9 0.0 0.018 15.4 0.0 2.1 2 0 0 2 2 2 1 RNA helicase CbiA PF01656.23 gi|325968996|ref|YP_004245188.1| - 0.0041 17.2 0.0 0.02 14.9 0.0 2.1 2 2 1 3 3 3 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.6 gi|325968996|ref|YP_004245188.1| - 0.0079 16.4 0.0 0.049 13.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|325968996|ref|YP_004245188.1| - 0.0089 15.8 0.2 0.088 12.5 0.0 2.1 2 1 1 3 3 3 1 IstB-like ATP binding protein CPT PF07931.12 gi|325968996|ref|YP_004245188.1| - 0.017 15.0 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein TsaE PF02367.17 gi|325968996|ref|YP_004245188.1| - 0.037 14.0 0.0 0.077 13.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|325968996|ref|YP_004245188.1| - 0.037 13.9 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|325968996|ref|YP_004245188.1| - 0.038 14.0 0.2 0.77 9.8 0.0 2.7 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|325968996|ref|YP_004245188.1| - 0.045 13.3 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|325968996|ref|YP_004245188.1| - 0.055 12.1 0.0 0.088 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|325968996|ref|YP_004245188.1| - 0.055 13.3 0.1 7.1 6.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein DUF2813 PF11398.8 gi|325968996|ref|YP_004245188.1| - 0.065 12.5 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) DUF815 PF05673.13 gi|325968996|ref|YP_004245188.1| - 0.07 12.3 0.0 0.15 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Cytidylate_kin PF02224.18 gi|325968996|ref|YP_004245188.1| - 0.077 12.7 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase AAA_33 PF13671.6 gi|325968996|ref|YP_004245188.1| - 0.078 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|325968996|ref|YP_004245188.1| - 0.084 12.7 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 MukB N-terminal Mg_chelatase PF01078.21 gi|325968996|ref|YP_004245188.1| - 0.15 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|325968996|ref|YP_004245188.1| - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Cas_APE2256 PF09651.10 gi|325968998|ref|YP_004245190.1| - 2.4e-37 127.9 0.0 3.3e-37 127.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) CRISPR_Cas6 PF10040.9 gi|325968999|ref|YP_004245191.1| - 1.2e-13 51.4 0.0 3.2e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 Cas6_N PF17952.1 gi|325968999|ref|YP_004245191.1| - 0.17 12.2 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 Cas6 N-terminal domain Cas_DxTHG PF09455.10 gi|325969000|ref|YP_004245192.1| - 9.1e-09 35.4 0.1 9.6e-09 35.3 0.1 1.0 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Cas_DxTHG PF09455.10 gi|325969001|ref|YP_004245193.1| - 0.1 12.2 0.2 0.1 12.2 0.2 1.3 1 1 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family Csm1_B PF18211.1 gi|325969002|ref|YP_004245194.1| - 4.2e-08 32.9 0.0 2.1e-07 30.7 0.0 2.1 2 0 0 2 2 2 1 Csm1 subunit domain B RAMPs PF03787.15 gi|325969003|ref|YP_004245195.1| - 0.025 14.6 0.1 0.044 13.8 0.1 1.6 1 1 0 1 1 1 0 RAMP superfamily RAMPs PF03787.15 gi|325969005|ref|YP_004245197.1| - 1.3e-08 35.2 0.0 2.5e-08 34.2 0.0 1.4 1 1 0 1 1 1 1 RAMP superfamily Csm2_III-A PF03750.13 gi|325969006|ref|YP_004245198.1| - 8.9e-05 23.3 0.0 0.00013 22.8 0.0 1.2 1 0 0 1 1 1 1 Csm2 Type III-A AAA_15 PF13175.6 gi|325969007|ref|YP_004245199.1| - 1.9e-12 47.6 0.2 6.7e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|325969007|ref|YP_004245199.1| - 0.0002 21.3 2.5 0.0037 17.1 0.0 2.6 2 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system DUF4276 PF14103.6 gi|325969007|ref|YP_004245199.1| - 0.0011 19.2 0.1 0.0016 18.7 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4276) AAA_23 PF13476.6 gi|325969007|ref|YP_004245199.1| - 0.019 15.5 3.6 0.061 13.8 3.6 1.7 1 1 0 1 1 1 0 AAA domain Kinocilin PF15033.6 gi|325969007|ref|YP_004245199.1| - 0.024 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 Kinocilin protein NYD-SP28 PF14772.6 gi|325969007|ref|YP_004245199.1| - 0.095 12.8 0.4 0.19 11.8 0.4 1.4 1 0 0 1 1 1 0 Sperm tail Spore_YhcN_YlaJ PF09580.10 gi|325969007|ref|YP_004245199.1| - 0.11 12.6 0.5 0.19 11.8 0.5 1.3 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AAA_25 PF13481.6 gi|325969007|ref|YP_004245199.1| - 0.18 11.3 0.0 0.54 9.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF5615 PF18480.1 gi|325969009|ref|YP_004245201.1| - 0.16 11.7 0.2 0.54 10.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) DUF5110 PF17137.4 gi|325969010|ref|YP_004245202.1| - 0.071 13.4 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5110) Cas_DxTHG PF09455.10 gi|325969011|ref|YP_004245203.1| - 1.1e-13 51.5 0.1 1.4e-13 51.2 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family TPR_11 PF13414.6 gi|325969011|ref|YP_004245203.1| - 0.035 13.8 3.4 0.92 9.2 0.2 2.8 3 0 0 3 3 3 0 TPR repeat MalF_P2 PF14785.6 gi|325969011|ref|YP_004245203.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Maltose transport system permease protein MalF P2 domain EVE PF01878.18 gi|325969012|ref|YP_004245204.1| - 0.0074 16.3 0.0 0.0099 15.9 0.0 1.2 1 0 0 1 1 1 1 EVE domain DEAD PF00270.29 gi|325969013|ref|YP_004245205.1| - 9.2e-31 107.0 0.0 2.5e-30 105.5 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|325969013|ref|YP_004245205.1| - 4.4e-23 82.1 0.0 1.8e-22 80.1 0.0 2.1 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.31 gi|325969013|ref|YP_004245205.1| - 1.4e-19 70.5 0.1 6.2e-17 61.9 0.1 2.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|325969013|ref|YP_004245205.1| - 1.2e-07 31.8 0.0 3.1e-07 30.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|325969013|ref|YP_004245205.1| - 0.00041 20.3 0.1 0.00096 19.2 0.1 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_19 PF13245.6 gi|325969013|ref|YP_004245205.1| - 0.0022 18.4 0.8 0.019 15.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain HEM4 PF02602.15 gi|325969013|ref|YP_004245205.1| - 0.0098 15.3 0.0 0.2 11.0 0.0 2.8 1 1 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF4776 PF16003.5 gi|325969013|ref|YP_004245205.1| - 0.021 13.8 0.5 0.031 13.3 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) AAA_22 PF13401.6 gi|325969013|ref|YP_004245205.1| - 0.057 13.7 2.6 0.65 10.3 0.5 3.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|325969013|ref|YP_004245205.1| - 0.064 13.0 0.4 0.27 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain LPD22 PF18834.1 gi|325969013|ref|YP_004245205.1| - 0.72 10.1 4.0 33 4.8 0.0 3.7 5 0 0 5 5 4 0 Large polyvalent protein associated domain 22 CbiA PF01656.23 gi|325969014|ref|YP_004245206.1| - 2.6e-05 24.3 0.4 4.6e-05 23.5 0.4 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|325969014|ref|YP_004245206.1| - 0.00045 19.8 0.5 0.00088 18.8 0.5 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|325969014|ref|YP_004245206.1| - 0.022 14.0 0.1 0.047 13.0 0.1 1.4 1 0 0 1 1 1 0 ATPase MipZ AAA_31 PF13614.6 gi|325969014|ref|YP_004245206.1| - 0.043 13.7 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|325969014|ref|YP_004245206.1| - 0.091 12.0 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 VirC1 protein CbiA PF01656.23 gi|325969016|ref|YP_004245208.1| - 2.8e-05 24.2 0.0 3.4e-05 23.9 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|325969016|ref|YP_004245208.1| - 0.012 15.6 4.2 0.18 11.7 4.0 2.2 1 1 0 1 1 1 0 AAA domain ParA PF10609.9 gi|325969016|ref|YP_004245208.1| - 0.053 13.0 0.1 0.12 11.9 0.0 1.6 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|325969016|ref|YP_004245208.1| - 0.15 11.5 0.2 0.21 11.0 0.2 1.5 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ BLOC1_2 PF10046.9 gi|325969017|ref|YP_004245209.1| - 0.0005 20.3 1.8 0.0012 19.0 1.0 1.8 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.12 gi|325969017|ref|YP_004245209.1| - 0.0025 18.2 0.7 0.0044 17.5 0.6 1.5 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein TolA_bind_tri PF16331.5 gi|325969017|ref|YP_004245209.1| - 0.0051 16.9 2.3 0.14 12.2 0.1 2.3 1 1 1 2 2 2 1 TolA binding protein trimerisation DASH_Duo1 PF08651.10 gi|325969017|ref|YP_004245209.1| - 0.015 15.1 0.9 0.032 14.0 0.7 1.7 1 1 1 2 2 2 0 DASH complex subunit Duo1 Baculo_PEP_C PF04513.12 gi|325969017|ref|YP_004245209.1| - 0.021 14.9 1.2 0.031 14.3 1.2 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_23 PF13476.6 gi|325969017|ref|YP_004245209.1| - 0.026 15.0 5.9 0.031 14.8 5.9 1.0 1 0 0 1 1 1 0 AAA domain Effector_1 PF04518.12 gi|325969017|ref|YP_004245209.1| - 0.026 13.6 0.4 0.042 12.9 0.3 1.3 1 1 0 1 1 1 0 Effector from type III secretion system Snapin_Pallidin PF14712.6 gi|325969017|ref|YP_004245209.1| - 0.028 14.8 1.0 0.1 13.1 1.0 1.9 1 1 0 1 1 1 0 Snapin/Pallidin PCRF PF03462.18 gi|325969017|ref|YP_004245209.1| - 0.055 13.3 0.1 0.08 12.8 0.1 1.3 1 0 0 1 1 1 0 PCRF domain DASH_Dad1 PF08649.10 gi|325969017|ref|YP_004245209.1| - 0.055 13.7 1.1 2 8.6 0.0 2.3 2 0 0 2 2 2 0 DASH complex subunit Dad1 Prefoldin PF02996.17 gi|325969017|ref|YP_004245209.1| - 0.062 13.2 1.6 4.7 7.2 0.1 2.3 1 1 1 2 2 2 0 Prefoldin subunit NYD-SP28_assoc PF14775.6 gi|325969017|ref|YP_004245209.1| - 1.7 8.8 4.9 0.5 10.5 1.5 1.9 2 1 1 3 3 3 0 Sperm tail C-terminal domain FlaC_arch PF05377.11 gi|325969017|ref|YP_004245209.1| - 3.5 8.1 7.1 5 7.6 0.1 2.8 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) T2SSE PF00437.20 gi|325969018|ref|YP_004245210.1| - 1.4e-17 63.7 0.0 2.3e-17 62.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|325969018|ref|YP_004245210.1| - 0.00091 18.8 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|325969018|ref|YP_004245210.1| - 0.0019 18.3 0.0 0.0032 17.6 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|325969018|ref|YP_004245210.1| - 0.0055 17.1 0.0 0.0088 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|325969018|ref|YP_004245210.1| - 0.029 14.1 0.3 0.061 13.1 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|325969018|ref|YP_004245210.1| - 0.043 13.2 0.1 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|325969018|ref|YP_004245210.1| - 0.07 13.3 0.1 0.13 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|325969018|ref|YP_004245210.1| - 0.072 13.5 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|325969018|ref|YP_004245210.1| - 0.088 12.8 0.0 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|325969018|ref|YP_004245210.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|325969018|ref|YP_004245210.1| - 0.14 12.7 0.0 0.24 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|325969018|ref|YP_004245210.1| - 0.21 11.9 0.0 0.52 10.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain ATP_bind_1 PF03029.17 gi|325969018|ref|YP_004245210.1| - 0.24 11.2 0.2 0.35 10.6 0.2 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Gtr1_RagA PF04670.12 gi|325969018|ref|YP_004245210.1| - 0.26 10.6 0.0 0.46 9.8 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_31 PF13614.6 gi|325969019|ref|YP_004245211.1| - 3e-14 53.3 0.0 4e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|325969019|ref|YP_004245211.1| - 1.1e-13 51.3 0.0 1.3e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|325969019|ref|YP_004245211.1| - 2.6e-06 26.9 0.0 4.2e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|325969019|ref|YP_004245211.1| - 3.4e-06 26.7 0.1 6.1e-06 25.9 0.1 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|325969019|ref|YP_004245211.1| - 0.00082 18.9 0.0 0.0016 17.9 0.0 1.5 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|325969019|ref|YP_004245211.1| - 0.0015 17.9 0.0 0.0078 15.5 0.1 1.9 2 0 0 2 2 2 1 ATPase MipZ VirC1 PF07015.11 gi|325969019|ref|YP_004245211.1| - 0.014 14.7 0.0 0.026 13.8 0.0 1.4 1 0 0 1 1 1 0 VirC1 protein Fer4_NifH PF00142.18 gi|325969019|ref|YP_004245211.1| - 0.051 13.0 0.0 0.069 12.6 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MeaB PF03308.16 gi|325969019|ref|YP_004245211.1| - 0.15 11.0 0.0 0.24 10.3 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_5 PF07728.14 gi|325969019|ref|YP_004245211.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Big_7 PF17957.1 gi|325969021|ref|YP_004245213.1| - 0.29 11.9 4.9 0.68 10.7 4.9 1.8 1 1 0 1 1 1 0 Bacterial Ig domain Pterin_4a PF01329.19 gi|325969022|ref|YP_004245214.1| - 1.5e-27 95.6 0.0 1.7e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase DUF5098 PF17023.5 gi|325969023|ref|YP_004245215.1| - 9.8e-05 21.5 3.6 0.00014 21.0 3.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5098) DUF948 PF06103.11 gi|325969023|ref|YP_004245215.1| - 0.00079 19.6 4.7 0.24 11.7 1.1 2.6 1 1 2 3 3 3 3 Bacterial protein of unknown function (DUF948) APG6_N PF17675.1 gi|325969023|ref|YP_004245215.1| - 0.00083 19.9 8.6 0.0047 17.5 9.1 1.8 1 1 1 2 2 2 2 Apg6 coiled-coil region zf-C4H2 PF10146.9 gi|325969023|ref|YP_004245215.1| - 0.00094 19.6 1.8 0.0011 19.3 1.8 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein DUF4709 PF15821.5 gi|325969023|ref|YP_004245215.1| - 0.0011 19.2 1.8 0.42 10.9 0.1 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4709) EzrA PF06160.12 gi|325969023|ref|YP_004245215.1| - 0.0018 16.5 6.7 0.003 15.8 6.7 1.4 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|325969023|ref|YP_004245215.1| - 0.0035 17.4 8.0 0.033 14.2 2.5 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Prominin PF05478.11 gi|325969023|ref|YP_004245215.1| - 0.0036 15.3 1.5 0.0045 15.0 1.5 1.1 1 0 0 1 1 1 1 Prominin DUF724 PF05266.14 gi|325969023|ref|YP_004245215.1| - 0.0046 16.8 3.8 0.0065 16.3 3.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF724) KASH_CCD PF14662.6 gi|325969023|ref|YP_004245215.1| - 0.0071 16.2 7.1 0.012 15.5 7.1 1.3 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Snapin_Pallidin PF14712.6 gi|325969023|ref|YP_004245215.1| - 0.01 16.2 6.0 2 8.9 2.1 2.7 1 1 2 3 3 3 0 Snapin/Pallidin UPF0242 PF06785.11 gi|325969023|ref|YP_004245215.1| - 0.013 15.7 3.0 0.016 15.3 3.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Pyr_redox PF00070.27 gi|325969023|ref|YP_004245215.1| - 0.015 15.8 0.1 0.044 14.3 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF2408 PF10303.9 gi|325969023|ref|YP_004245215.1| - 0.019 15.5 2.4 0.032 14.8 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) Phage_HK97_TLTM PF06120.11 gi|325969023|ref|YP_004245215.1| - 0.021 14.0 5.0 0.03 13.5 5.0 1.1 1 0 0 1 1 1 0 Tail length tape measure protein YhzD PF14120.6 gi|325969023|ref|YP_004245215.1| - 0.025 14.7 0.0 0.067 13.3 0.0 1.7 1 0 0 1 1 1 0 YhzD-like protein TMPIT PF07851.13 gi|325969023|ref|YP_004245215.1| - 0.028 13.7 0.9 0.028 13.7 0.9 1.6 1 1 1 2 2 2 0 TMPIT-like protein Baculo_PEP_C PF04513.12 gi|325969023|ref|YP_004245215.1| - 0.036 14.1 7.6 0.48 10.5 6.6 2.6 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Peptidase_M32 PF02074.15 gi|325969023|ref|YP_004245215.1| - 0.036 12.8 2.6 0.049 12.4 2.6 1.1 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase BAR_3 PF16746.5 gi|325969023|ref|YP_004245215.1| - 0.046 13.4 0.5 0.069 12.8 0.5 1.2 1 0 0 1 1 1 0 BAR domain of APPL family CENP-F_leu_zip PF10473.9 gi|325969023|ref|YP_004245215.1| - 0.048 13.7 8.6 0.095 12.7 8.3 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4735 PF15882.5 gi|325969023|ref|YP_004245215.1| - 0.069 12.6 0.3 0.098 12.1 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4735) YabA PF06156.13 gi|325969023|ref|YP_004245215.1| - 0.1 13.2 8.3 0.58 10.8 7.6 2.1 1 1 1 2 2 2 0 Initiation control protein YabA TssO PF17561.2 gi|325969023|ref|YP_004245215.1| - 0.11 12.6 3.8 0.17 12.0 3.8 1.3 1 0 0 1 1 1 0 Type VI secretion system, TssO Atg14 PF10186.9 gi|325969023|ref|YP_004245215.1| - 0.12 11.5 4.7 0.16 11.0 4.7 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FUSC PF04632.12 gi|325969023|ref|YP_004245215.1| - 0.13 10.7 0.1 0.16 10.5 0.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family SKA2 PF16740.5 gi|325969023|ref|YP_004245215.1| - 0.14 12.0 4.5 6.1 6.7 0.3 2.4 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF3450 PF11932.8 gi|325969023|ref|YP_004245215.1| - 0.14 11.4 7.4 0.03 13.6 1.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Rx_N PF18052.1 gi|325969023|ref|YP_004245215.1| - 0.16 12.3 5.3 4.5 7.6 0.1 2.9 3 0 0 3 3 3 0 Rx N-terminal domain Sec34 PF04136.15 gi|325969023|ref|YP_004245215.1| - 0.18 11.7 2.2 0.71 9.7 1.9 1.9 1 1 1 2 2 2 0 Sec34-like family DUF1394 PF07159.12 gi|325969023|ref|YP_004245215.1| - 0.2 10.9 2.5 0.26 10.5 0.9 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1394) DUF16 PF01519.16 gi|325969023|ref|YP_004245215.1| - 0.22 12.0 8.7 0.69 10.4 4.7 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 Mod_r PF07200.13 gi|325969023|ref|YP_004245215.1| - 0.27 11.3 6.1 0.76 9.9 6.1 1.7 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Nup88 PF10168.9 gi|325969023|ref|YP_004245215.1| - 0.3 8.8 6.0 0.38 8.5 6.0 1.1 1 0 0 1 1 1 0 Nuclear pore component LMBR1 PF04791.16 gi|325969023|ref|YP_004245215.1| - 0.33 9.8 1.5 0.39 9.6 1.5 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3461 PF11944.8 gi|325969023|ref|YP_004245215.1| - 0.42 10.8 8.3 3.6 7.7 0.4 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF3461) Cauli_AT PF03233.13 gi|325969023|ref|YP_004245215.1| - 0.71 9.8 5.3 2.1 8.2 5.3 1.7 1 1 0 1 1 1 0 Aphid transmission protein FlaC_arch PF05377.11 gi|325969023|ref|YP_004245215.1| - 1.1 9.7 9.4 8.5 6.9 0.9 3.3 1 1 1 3 3 3 0 Flagella accessory protein C (FlaC) FeoB_Cyto PF17910.1 gi|325969023|ref|YP_004245215.1| - 1.3 9.6 5.9 9.1 6.9 5.9 2.4 1 1 0 1 1 1 0 FeoB cytosolic helical domain UPF0449 PF15136.6 gi|325969023|ref|YP_004245215.1| - 1.4 9.4 4.2 14 6.2 4.2 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0449 Sec2p PF06428.11 gi|325969023|ref|YP_004245215.1| - 2.1 8.4 7.3 0.47 10.5 0.2 2.7 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p AHD PF17793.1 gi|325969023|ref|YP_004245215.1| - 2.2 8.2 4.3 1.3 8.9 1.0 2.3 2 0 0 2 2 2 0 ANC1 homology domain (AHD) KxDL PF10241.9 gi|325969023|ref|YP_004245215.1| - 2.4 8.5 5.3 1.7 9.0 0.9 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein ZapB PF06005.12 gi|325969023|ref|YP_004245215.1| - 3.6 8.1 13.7 12 6.4 11.9 2.5 1 1 1 2 2 2 0 Cell division protein ZapB Fib_alpha PF08702.10 gi|325969023|ref|YP_004245215.1| - 4.3 7.5 7.7 7.9 6.7 7.7 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Cyt_bd_oxida_I PF01654.17 gi|325969024|ref|YP_004245216.1| - 5e-14 51.7 14.6 5e-14 51.7 14.6 2.3 1 1 1 2 2 2 1 Cytochrome bd terminal oxidase subunit I COX7C PF02935.16 gi|325969024|ref|YP_004245216.1| - 0.23 11.8 1.4 0.97 9.7 1.4 2.1 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc DUF2981 PF11200.8 gi|325969024|ref|YP_004245216.1| - 6.4 6.4 6.4 12 5.5 6.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) Cyt_bd_oxida_I PF01654.17 gi|325969025|ref|YP_004245217.1| - 4.3e-73 246.3 28.4 7.3e-73 245.6 28.4 1.3 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I EVE PF01878.18 gi|325969026|ref|YP_004245218.1| - 2.1e-06 27.8 0.0 4.5e-06 26.7 0.0 1.5 2 0 0 2 2 2 1 EVE domain BTAD PF03704.17 gi|325969026|ref|YP_004245218.1| - 0.015 15.8 0.4 0.03 14.8 0.4 1.4 1 0 0 1 1 1 0 Bacterial transcriptional activator domain Plant_NMP1 PF06694.11 gi|325969026|ref|YP_004245218.1| - 0.018 14.2 0.0 0.35 9.9 0.0 2.0 2 0 0 2 2 2 0 Plant nuclear matrix protein 1 (NMP1) PI-PLC-C1 PF16670.5 gi|325969026|ref|YP_004245218.1| - 0.086 11.9 0.0 0.12 11.4 0.0 1.1 1 0 0 1 1 1 0 Phosphoinositide phospholipase C, Ca2+-dependent MFS_1 PF07690.16 gi|325969027|ref|YP_004245219.1| - 1.1e-22 80.4 56.5 1.1e-22 80.4 56.5 2.6 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|325969027|ref|YP_004245219.1| - 1.3e-16 60.5 38.5 2.5e-16 59.6 10.2 3.1 1 1 2 3 3 3 3 Sugar (and other) transporter PLDc_2 PF13091.6 gi|325969028|ref|YP_004245220.1| - 1.1e-11 44.7 0.0 2.1e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|325969028|ref|YP_004245220.1| - 0.018 14.4 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 NgoFVII restriction endonuclease EVE PF01878.18 gi|325969029|ref|YP_004245221.1| - 1.7e-05 24.9 0.0 2.6e-05 24.3 0.0 1.3 1 1 0 1 1 1 1 EVE domain CDP-OH_P_transf PF01066.21 gi|325969030|ref|YP_004245222.1| - 1.9 9.3 4.6 15 6.5 0.2 2.8 2 1 0 2 2 2 0 CDP-alcohol phosphatidyltransferase ABC2_membrane_2 PF12679.7 gi|325969030|ref|YP_004245222.1| - 2.9 7.1 15.2 3.4 6.9 2.7 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein PDT PF00800.18 gi|325969031|ref|YP_004245223.1| - 2.4e-42 144.8 0.0 3.1e-42 144.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|325969031|ref|YP_004245223.1| - 5.9e-06 25.9 0.0 1.6e-05 24.6 0.0 1.7 1 0 0 1 1 1 1 ACT domain Iso_dh PF00180.20 gi|325969032|ref|YP_004245224.1| - 1.3e-99 333.7 0.1 1.5e-99 333.4 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|325969032|ref|YP_004245224.1| - 0.0038 16.7 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA Cupin_2 PF07883.11 gi|325969033|ref|YP_004245225.1| - 9.4e-15 54.1 0.4 1.3e-14 53.7 0.4 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|325969033|ref|YP_004245225.1| - 2.8e-11 43.5 0.4 4.8e-11 42.7 0.1 1.5 1 1 1 2 2 2 1 AraC-like ligand binding domain ARD PF03079.14 gi|325969033|ref|YP_004245225.1| - 1.2e-08 35.2 0.1 1.4e-08 35.0 0.1 1.1 1 0 0 1 1 1 1 ARD/ARD' family Cupin_1 PF00190.22 gi|325969033|ref|YP_004245225.1| - 2.8e-07 30.2 0.5 3.9e-07 29.8 0.5 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|325969033|ref|YP_004245225.1| - 0.00096 19.1 0.2 0.0011 18.9 0.2 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Ribosomal_S17 PF00366.20 gi|325969033|ref|YP_004245225.1| - 0.0027 17.8 0.2 0.0052 16.9 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein S17 Cupin_8 PF13621.6 gi|325969033|ref|YP_004245225.1| - 0.0031 17.3 0.4 0.27 10.9 0.1 2.0 1 1 1 2 2 2 1 Cupin-like domain Lyx_isomer PF07385.12 gi|325969033|ref|YP_004245225.1| - 0.0038 16.5 0.0 0.0045 16.3 0.0 1.0 1 0 0 1 1 1 1 D-lyxose isomerase Cupin_3 PF05899.12 gi|325969033|ref|YP_004245225.1| - 0.0051 16.5 0.0 0.007 16.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|325969033|ref|YP_004245225.1| - 0.035 13.8 0.1 0.04 13.6 0.1 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase PCO_ADO PF07847.12 gi|325969033|ref|YP_004245225.1| - 0.041 13.3 0.4 0.76 9.2 0.5 1.9 1 1 1 2 2 2 0 PCO_ADO AraC_binding_2 PF14525.6 gi|325969033|ref|YP_004245225.1| - 0.046 13.4 0.0 0.054 13.2 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_4 PF08007.12 gi|325969033|ref|YP_004245225.1| - 0.051 13.0 0.0 0.06 12.8 0.0 1.1 1 0 0 1 1 1 0 Cupin superfamily protein CBM39 PF15886.5 gi|325969033|ref|YP_004245225.1| - 0.11 12.4 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate binding domain (family 32) HMGL-like PF00682.19 gi|325969034|ref|YP_004245226.1| - 2e-78 263.6 2.4 2.8e-78 263.1 2.4 1.2 1 0 0 1 1 1 1 HMGL-like TPP_enzyme_N PF02776.18 gi|325969035|ref|YP_004245227.1| - 6.3e-54 182.2 0.1 4.8e-53 179.3 0.1 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|325969035|ref|YP_004245227.1| - 7.3e-45 152.1 0.0 1.6e-44 150.9 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|325969035|ref|YP_004245227.1| - 7.4e-43 146.0 0.0 6.6e-42 142.9 0.0 2.6 2 1 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACT_5 PF13710.6 gi|325969036|ref|YP_004245228.1| - 2e-11 43.5 0.2 2.9e-11 43.0 0.2 1.2 1 0 0 1 1 1 1 ACT domain DUF2067 PF09840.9 gi|325969036|ref|YP_004245228.1| - 0.036 13.7 0.1 0.039 13.5 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2067) IlvN PF07991.12 gi|325969037|ref|YP_004245229.1| - 4e-66 221.6 0.1 7.3e-66 220.8 0.0 1.4 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|325969037|ref|YP_004245229.1| - 4.9e-51 172.8 0.7 6.5e-51 172.4 0.7 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|325969037|ref|YP_004245229.1| - 2e-06 27.3 0.3 1.2e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|325969037|ref|YP_004245229.1| - 3.2e-05 24.1 0.0 7e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|325969037|ref|YP_004245229.1| - 4.5e-05 24.0 0.0 0.00012 22.6 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|325969037|ref|YP_004245229.1| - 0.0004 20.6 0.0 0.00076 19.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.19 gi|325969037|ref|YP_004245229.1| - 0.0063 17.2 0.0 0.018 15.7 0.0 1.8 1 0 0 1 1 1 1 CoA binding domain ApbA PF02558.16 gi|325969037|ref|YP_004245229.1| - 0.007 16.0 0.0 0.016 14.8 0.0 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|325969037|ref|YP_004245229.1| - 0.13 12.6 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain PolyA_pol_RNAbd PF12627.7 gi|325969037|ref|YP_004245229.1| - 0.37 10.6 1.4 6.7 6.6 0.2 3.4 5 0 0 5 5 5 0 Probable RNA and SrmB- binding site of polymerase A Aconitase PF00330.20 gi|325969038|ref|YP_004245230.1| - 9.7e-83 278.7 0.9 1.9e-51 175.5 0.0 2.6 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|325969038|ref|YP_004245230.1| - 8.2e-05 21.5 0.0 0.00012 20.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) PGM_PMM_I PF02878.16 gi|325969038|ref|YP_004245230.1| - 0.044 13.5 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Dimerisation PF08100.11 gi|325969038|ref|YP_004245230.1| - 0.088 12.8 0.0 2.9 8.0 0.0 2.6 2 0 0 2 2 2 0 Dimerisation domain Sde2_N_Ubi PF13019.6 gi|325969039|ref|YP_004245231.1| - 0.0013 18.6 0.1 0.0042 16.9 0.1 1.8 2 0 0 2 2 2 1 Silencing defective 2 N-terminal ubiquitin domain Aconitase_C PF00694.19 gi|325969040|ref|YP_004245232.1| - 1.2e-19 71.0 0.0 1.6e-19 70.5 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|325969040|ref|YP_004245232.1| - 0.0083 15.8 0.5 0.19 11.4 0.5 2.3 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus HMGL-like PF00682.19 gi|325969041|ref|YP_004245233.1| - 1.6e-41 142.6 0.1 2.1e-41 142.2 0.1 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|325969041|ref|YP_004245233.1| - 4.1e-22 78.5 0.1 1.4e-21 76.8 0.0 1.9 2 0 0 2 2 2 1 LeuA allosteric (dimerisation) domain Bac_luciferase PF00296.20 gi|325969041|ref|YP_004245233.1| - 0.029 13.8 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 Luciferase-like monooxygenase EF-hand_14 PF17959.1 gi|325969041|ref|YP_004245233.1| - 0.18 12.1 0.0 0.43 10.9 0.0 1.7 1 0 0 1 1 1 0 EF-hand domain AA_kinase PF00696.28 gi|325969042|ref|YP_004245234.1| - 6e-35 121.0 0.0 8.1e-35 120.5 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family Chlorophyllase PF07224.11 gi|325969042|ref|YP_004245234.1| - 0.095 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase Chlorophyllase2 PF12740.7 gi|325969042|ref|YP_004245234.1| - 0.16 10.8 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Semialdhyde_dh PF01118.24 gi|325969043|ref|YP_004245235.1| - 9.5e-29 100.3 0.0 1.4e-28 99.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|325969043|ref|YP_004245235.1| - 1.2e-22 80.8 0.0 1.9e-22 80.2 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Homoserine_dh PF00742.19 gi|325969044|ref|YP_004245236.1| - 2.9e-44 151.0 0.0 4e-44 150.6 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|325969044|ref|YP_004245236.1| - 1.6e-07 31.9 0.0 3.4e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|325969044|ref|YP_004245236.1| - 0.00043 20.5 0.0 0.0015 18.8 0.0 2.0 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|325969044|ref|YP_004245236.1| - 0.13 13.1 0.0 0.53 11.1 0.0 2.0 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold PALP PF00291.25 gi|325969045|ref|YP_004245237.1| - 5.6e-67 226.2 0.8 6.6e-67 226.0 0.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.12 gi|325969045|ref|YP_004245237.1| - 0.0026 17.3 1.5 0.0042 16.6 0.4 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|325969045|ref|YP_004245237.1| - 0.0044 16.9 0.1 0.008 16.1 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|325969045|ref|YP_004245237.1| - 0.0071 15.7 0.4 1.1 8.8 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|325969045|ref|YP_004245237.1| - 0.012 15.6 0.1 0.022 14.8 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|325969045|ref|YP_004245237.1| - 0.013 15.2 3.5 0.14 11.9 3.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|325969045|ref|YP_004245237.1| - 0.021 14.8 0.7 0.04 13.8 0.7 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Mu-like_Com PF10122.9 gi|325969045|ref|YP_004245237.1| - 0.023 14.1 1.5 5.4 6.5 0.2 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com PK_C PF02887.16 gi|325969045|ref|YP_004245237.1| - 0.024 14.9 0.2 0.5 10.6 0.1 2.3 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain DZR PF12773.7 gi|325969045|ref|YP_004245237.1| - 0.029 14.4 0.2 0.051 13.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HalOD2 PF18547.1 gi|325969045|ref|YP_004245237.1| - 0.036 14.0 0.1 5.5 7.0 0.1 2.7 1 1 1 2 2 2 0 Halobacterial output domain 2 Zn-ribbon_8 PF09723.10 gi|325969045|ref|YP_004245237.1| - 0.12 12.5 1.4 0.25 11.5 1.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|325969045|ref|YP_004245237.1| - 0.13 11.9 1.9 0.34 10.6 1.9 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|325969045|ref|YP_004245237.1| - 0.24 11.4 0.2 0.39 10.7 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ACC PF17848.1 gi|325969045|ref|YP_004245237.1| - 0.3 11.2 1.0 14 5.8 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain UPF0547 PF10571.9 gi|325969045|ref|YP_004245237.1| - 0.85 9.8 2.4 6.3 7.0 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|325969045|ref|YP_004245237.1| - 0.85 9.6 3.7 17 5.5 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|325969045|ref|YP_004245237.1| - 1.3 9.0 3.0 20 5.2 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain MFS_1 PF07690.16 gi|325969046|ref|YP_004245238.1| - 4.9e-21 75.0 52.7 4.9e-21 75.0 52.7 1.9 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|325969046|ref|YP_004245238.1| - 3.9e-13 49.1 31.5 6.5e-13 48.3 15.3 3.1 2 1 1 3 3 3 3 Sugar (and other) transporter Semialdhyde_dh PF01118.24 gi|325969047|ref|YP_004245239.1| - 4.7e-34 117.4 0.0 7.2e-34 116.8 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|325969047|ref|YP_004245239.1| - 7.2e-15 55.5 0.0 1.6e-14 54.4 0.0 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|325969047|ref|YP_004245239.1| - 0.0035 17.5 0.0 0.0063 16.6 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|325969047|ref|YP_004245239.1| - 0.18 11.2 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF4021 PF13213.6 gi|325969047|ref|YP_004245239.1| - 0.26 11.3 0.1 11 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4021) RimK PF08443.11 gi|325969049|ref|YP_004245241.1| - 2.1e-33 115.5 0.0 2.8e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|325969049|ref|YP_004245241.1| - 2.6e-12 46.5 0.0 8.2e-12 44.9 0.0 1.7 2 1 0 2 2 2 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|325969049|ref|YP_004245241.1| - 1.2e-09 38.4 0.0 2.7e-09 37.3 0.0 1.5 1 1 1 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|325969049|ref|YP_004245241.1| - 8.4e-05 22.2 0.0 0.0097 15.5 0.0 2.2 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.6 gi|325969049|ref|YP_004245241.1| - 0.028 13.7 0.0 0.84 8.8 0.0 2.3 2 1 0 2 2 2 0 Sugar-transfer associated ATP-grasp HMGL-like PF00682.19 gi|325969050|ref|YP_004245242.1| - 7.8e-36 124.0 0.0 1.1e-35 123.5 0.0 1.3 1 0 0 1 1 1 1 HMGL-like Peptidase_M20 PF01546.28 gi|325969051|ref|YP_004245243.1| - 1.7e-26 93.2 0.0 2.2e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|325969051|ref|YP_004245243.1| - 1.8e-13 50.3 0.0 3.4e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|325969051|ref|YP_004245243.1| - 0.016 14.9 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 RimK PF08443.11 gi|325969052|ref|YP_004245244.1| - 9.8e-35 119.9 0.0 1.3e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|325969052|ref|YP_004245244.1| - 3e-11 43.0 0.0 4.8e-11 42.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|325969052|ref|YP_004245244.1| - 4.8e-09 36.5 0.0 7.5e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|325969052|ref|YP_004245244.1| - 0.00057 19.4 0.0 0.0024 17.4 0.0 1.9 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|325969052|ref|YP_004245244.1| - 0.00072 18.9 0.0 0.24 10.6 0.0 2.4 1 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|325969052|ref|YP_004245244.1| - 0.0071 15.9 0.0 0.026 14.1 0.0 1.8 2 0 0 2 2 2 1 ATP-grasp domain R2K_3 PF14243.6 gi|325969052|ref|YP_004245244.1| - 0.029 14.4 0.2 0.041 13.9 0.2 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 zinc_ribbon_4 PF13717.6 gi|325969053|ref|YP_004245245.1| - 3.9e-05 23.5 0.8 0.043 13.7 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|325969053|ref|YP_004245245.1| - 0.00083 19.4 0.1 0.00086 19.3 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|325969053|ref|YP_004245245.1| - 0.0011 18.9 0.3 0.0014 18.6 0.3 1.1 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|325969053|ref|YP_004245245.1| - 0.0014 18.7 0.7 0.0023 18.0 0.7 1.5 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|325969053|ref|YP_004245245.1| - 0.0042 16.4 1.9 0.18 11.3 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-HYPF PF07503.12 gi|325969053|ref|YP_004245245.1| - 0.0047 16.7 0.7 0.49 10.2 0.0 2.1 2 0 0 2 2 2 1 HypF finger Prok-RING_1 PF14446.6 gi|325969053|ref|YP_004245245.1| - 0.0072 16.2 4.0 0.016 15.2 4.0 1.5 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 Cys_rich_CPXG PF14255.6 gi|325969053|ref|YP_004245245.1| - 0.0074 16.2 1.6 0.49 10.3 0.1 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG zinc_ribbon_2 PF13240.6 gi|325969053|ref|YP_004245245.1| - 0.016 14.9 0.9 1.9 8.3 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|325969053|ref|YP_004245245.1| - 0.029 14.4 0.7 0.089 12.8 0.7 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-Sec23_Sec24 PF04810.15 gi|325969053|ref|YP_004245245.1| - 0.033 14.2 0.0 0.07 13.2 0.0 1.5 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger PHD PF00628.29 gi|325969053|ref|YP_004245245.1| - 0.033 14.1 0.8 0.046 13.6 0.8 1.2 1 0 0 1 1 1 0 PHD-finger OrfB_Zn_ribbon PF07282.11 gi|325969053|ref|YP_004245245.1| - 0.046 13.7 0.1 0.069 13.1 0.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|325969053|ref|YP_004245245.1| - 0.046 13.7 0.6 0.1 12.6 0.6 1.6 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_5 PF13719.6 gi|325969053|ref|YP_004245245.1| - 0.048 13.4 0.1 0.82 9.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|325969053|ref|YP_004245245.1| - 0.08 12.9 0.3 0.84 9.7 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid CpXC PF14353.6 gi|325969053|ref|YP_004245245.1| - 0.088 12.9 1.0 0.72 9.9 0.0 2.0 1 1 1 2 2 2 0 CpXC protein YhfH PF14149.6 gi|325969053|ref|YP_004245245.1| - 0.17 11.9 2.4 6.6 6.8 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein ADD_ATRX PF17981.1 gi|325969053|ref|YP_004245245.1| - 0.19 11.6 2.7 1.8 8.5 0.1 2.1 1 1 1 2 2 2 0 Cysteine Rich ADD domain zf-C2HC_2 PF13913.6 gi|325969053|ref|YP_004245245.1| - 0.22 11.5 3.1 0.51 10.3 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-RING_7 PF02591.15 gi|325969053|ref|YP_004245245.1| - 0.41 10.9 0.3 0.41 10.9 0.3 2.1 1 1 1 2 2 2 0 C4-type zinc ribbon domain DUF3797 PF12677.7 gi|325969053|ref|YP_004245245.1| - 0.56 10.1 3.4 0.35 10.8 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF983 PF06170.12 gi|325969053|ref|YP_004245245.1| - 0.7 10.3 2.1 22 5.5 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-UDP PF14569.6 gi|325969053|ref|YP_004245245.1| - 1.2 9.3 4.6 10 6.3 4.5 1.9 1 1 1 2 2 2 0 Zinc-binding RING-finger AA_kinase PF00696.28 gi|325969054|ref|YP_004245246.1| - 4.9e-38 131.1 0.6 5.5e-38 130.9 0.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family PrpR_N PF06506.11 gi|325969054|ref|YP_004245246.1| - 0.021 14.4 0.0 7.6 6.1 0.0 2.4 2 0 0 2 2 2 0 Propionate catabolism activator Glyco_trans_1_4 PF13692.6 gi|325969054|ref|YP_004245246.1| - 0.088 13.2 0.2 0.43 11.0 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferases group 1 Aminotran_1_2 PF00155.21 gi|325969055|ref|YP_004245247.1| - 2.5e-56 191.4 0.0 2.8e-56 191.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|325969055|ref|YP_004245247.1| - 8.3e-08 31.1 0.0 1.3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|325969055|ref|YP_004245247.1| - 7e-05 22.3 0.0 0.00012 21.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|325969055|ref|YP_004245247.1| - 0.00013 21.1 0.0 0.00026 20.1 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V CPSase_sm_chain PF00988.22 gi|325969056|ref|YP_004245248.1| - 6.2e-45 152.2 0.0 1e-44 151.4 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|325969056|ref|YP_004245248.1| - 3.2e-40 137.9 0.0 4.4e-40 137.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|325969056|ref|YP_004245248.1| - 2e-08 34.2 0.3 3.2e-06 27.0 0.2 2.6 1 1 1 2 2 2 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|325969057|ref|YP_004245249.1| - 2.6e-90 301.6 0.0 5.7e-59 199.1 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|325969057|ref|YP_004245249.1| - 4.2e-21 75.6 0.0 8.9e-21 74.5 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|325969057|ref|YP_004245249.1| - 3.9e-13 49.3 0.1 3.4e-06 26.8 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|325969057|ref|YP_004245249.1| - 1.5e-10 41.0 0.0 0.00036 20.1 0.0 2.7 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|325969057|ref|YP_004245249.1| - 1.7e-09 37.5 0.0 5.7e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|325969057|ref|YP_004245249.1| - 1.7e-07 31.5 0.0 0.0005 20.2 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|325969057|ref|YP_004245249.1| - 3.9e-06 26.6 0.0 0.0019 17.8 0.0 3.4 4 0 0 4 4 4 1 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|325969057|ref|YP_004245249.1| - 7.6e-05 22.3 0.0 0.003 17.0 0.0 2.6 3 0 0 3 3 3 1 ATP-grasp domain Lyase_1 PF00206.20 gi|325969058|ref|YP_004245250.1| - 2.2e-32 112.7 0.0 3.1e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Lyase PaREP1 PF05942.11 gi|325969059|ref|YP_004245251.1| - 0.0023 17.8 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Tenui_N PF05733.11 gi|325969059|ref|YP_004245251.1| - 0.13 11.8 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Tenuivirus/Phlebovirus nucleocapsid protein PaREP1 PF05942.11 gi|325969060|ref|YP_004245252.1| - 3.8e-16 59.1 0.4 5.4e-16 58.5 0.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Arginosuc_synth PF00764.19 gi|325969061|ref|YP_004245253.1| - 1.7e-128 429.2 0.0 2e-128 429.0 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Peptidase_M16_C PF05193.21 gi|325969062|ref|YP_004245254.1| - 3.9e-10 40.0 0.0 6.8e-10 39.2 0.0 1.5 1 1 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 gi|325969062|ref|YP_004245254.1| - 0.047 13.7 0.0 0.14 12.1 0.0 1.8 2 1 0 2 2 2 0 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|325969063|ref|YP_004245255.1| - 1.8e-17 63.9 0.0 4e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase M16 inactive domain Peptidase_M16 PF00675.20 gi|325969063|ref|YP_004245255.1| - 4.4e-15 56.0 0.0 6.3e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Ribosomal_S10 PF00338.22 gi|325969064|ref|YP_004245256.1| - 1e-25 89.8 0.0 1.1e-25 89.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GDPD_2 PF13653.6 gi|325969064|ref|YP_004245256.1| - 0.011 16.2 0.1 2.9 8.5 0.0 2.3 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family PriA_C PF18074.1 gi|325969064|ref|YP_004245256.1| - 0.017 15.9 0.0 0.039 14.8 0.0 1.5 2 0 0 2 2 2 0 Primosomal protein N C-terminal domain GTP_EFTU PF00009.27 gi|325969065|ref|YP_004245257.1| - 6.7e-53 179.1 0.0 1.1e-52 178.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|325969065|ref|YP_004245257.1| - 3.9e-36 123.7 0.0 3.1e-35 120.9 0.0 2.4 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|325969065|ref|YP_004245257.1| - 1.9e-17 63.4 4.2 1.9e-17 63.4 4.2 2.5 2 1 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|325969065|ref|YP_004245257.1| - 2.3e-06 27.4 1.7 2.3e-06 27.4 1.7 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|325969065|ref|YP_004245257.1| - 5.4e-05 23.2 0.0 0.00046 20.2 0.0 2.5 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|325969065|ref|YP_004245257.1| - 0.00036 20.1 0.1 0.02 14.5 0.0 3.1 2 1 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|325969065|ref|YP_004245257.1| - 0.015 15.2 0.0 0.36 10.7 0.0 2.3 1 1 1 2 2 2 0 RsgA GTPase Dynamin_N PF00350.23 gi|325969065|ref|YP_004245257.1| - 0.12 12.4 0.2 3.3 7.7 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Septin PF00735.18 gi|325969065|ref|YP_004245257.1| - 0.13 11.5 0.0 0.34 10.1 0.0 1.7 1 1 0 1 1 1 0 Septin COXG PF06240.13 gi|325969066|ref|YP_004245258.1| - 8e-34 116.4 0.0 8.9e-34 116.2 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|325969066|ref|YP_004245258.1| - 4.5e-08 33.5 0.0 5.5e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|325969066|ref|YP_004245258.1| - 0.00072 19.8 0.0 0.00098 19.3 0.0 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Sugar_tr PF00083.24 gi|325969068|ref|YP_004245260.1| - 3.3e-07 29.6 4.9 3.6e-07 29.4 4.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325969068|ref|YP_004245260.1| - 1.2e-05 24.4 8.4 2.1e-05 23.6 8.4 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily SLATT_6 PF18169.1 gi|325969068|ref|YP_004245260.1| - 0.068 12.8 4.5 0.13 11.9 4.4 1.5 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 GPHR_N PF12537.8 gi|325969068|ref|YP_004245260.1| - 1.9 8.6 4.9 12 6.1 4.9 2.2 1 1 0 1 1 1 0 The Golgi pH Regulator (GPHR) Family N-terminal DUF2070 PF09843.9 gi|325969068|ref|YP_004245260.1| - 2.6 6.2 6.2 2.8 6.1 6.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) VKOR PF07884.14 gi|325969069|ref|YP_004245261.1| - 0.013 15.7 18.2 0.19 11.9 18.2 2.0 1 1 0 1 1 1 0 Vitamin K epoxide reductase family NCE101 PF11654.8 gi|325969069|ref|YP_004245261.1| - 0.51 10.1 2.6 5.2 6.9 0.2 2.5 2 0 0 2 2 2 0 Non-classical export protein 1 MoCF_biosynth PF00994.24 gi|325969070|ref|YP_004245262.1| - 7.2e-33 113.3 0.2 8.8e-33 113.0 0.2 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain XdhC_C PF13478.6 gi|325969071|ref|YP_004245263.1| - 4.2e-23 82.2 0.0 5.9e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain PglD_N PF17836.1 gi|325969071|ref|YP_004245263.1| - 0.72 10.5 3.2 0.58 10.8 0.8 1.9 2 0 0 2 2 2 0 PglD N-terminal domain Fer2_2 PF01799.20 gi|325969072|ref|YP_004245264.1| - 1.5e-33 114.7 0.9 2.7e-33 113.8 0.0 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|325969072|ref|YP_004245264.1| - 8e-06 25.7 0.4 8e-06 25.7 0.4 1.8 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|325969072|ref|YP_004245264.1| - 0.00014 21.8 0.1 0.00024 21.1 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_M60_C PF18630.1 gi|325969072|ref|YP_004245264.1| - 0.017 15.3 0.1 0.027 14.6 0.1 1.3 1 0 0 1 1 1 0 Peptidase M60 C-terminal domain NIF3 PF01784.18 gi|325969072|ref|YP_004245264.1| - 0.14 11.7 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) FAD_binding_5 PF00941.21 gi|325969073|ref|YP_004245265.1| - 1.5e-47 161.5 0.0 2.2e-47 161.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|325969073|ref|YP_004245265.1| - 2.3e-27 95.1 0.4 3.9e-27 94.4 0.4 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain LPD7 PF18821.1 gi|325969073|ref|YP_004245265.1| - 0.12 12.5 0.1 0.21 11.7 0.1 1.4 1 0 0 1 1 1 0 Large polyvalent protein-associated domain 7 Ald_Xan_dh_C2 PF02738.18 gi|325969074|ref|YP_004245266.1| - 5.3e-153 510.4 0.0 7.4e-153 509.9 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|325969074|ref|YP_004245266.1| - 9e-30 103.3 0.0 2.1e-29 102.1 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Lactococcin_972 PF09683.10 gi|325969074|ref|YP_004245266.1| - 0.12 13.0 0.2 0.27 11.8 0.2 1.6 1 0 0 1 1 1 0 Bacteriocin (Lactococcin_972) tRNA-synt_1 PF00133.22 gi|325969075|ref|YP_004245267.1| - 3.8e-66 223.6 0.0 9.3e-65 219.0 0.0 2.6 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|325969075|ref|YP_004245267.1| - 4.8e-20 72.0 1.1 1.2e-19 70.8 1.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|325969075|ref|YP_004245267.1| - 2.3e-19 69.4 1.0 3.9e-11 42.3 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|325969075|ref|YP_004245267.1| - 4.2e-09 36.2 0.1 2.4e-08 33.7 0.0 2.3 2 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|325969075|ref|YP_004245267.1| - 5.8e-09 35.7 0.0 0.00021 20.7 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|325969075|ref|YP_004245267.1| - 0.013 14.4 0.0 4 6.2 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) CBS PF00571.28 gi|325969076|ref|YP_004245268.1| - 6e-21 74.7 5.8 4.4e-11 43.1 0.7 2.1 2 0 0 2 2 2 2 CBS domain PDDEXK_1 PF12705.7 gi|325969078|ref|YP_004245270.1| - 0.01 15.8 0.0 0.014 15.3 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily COMM_domain PF07258.14 gi|325969078|ref|YP_004245270.1| - 0.12 12.5 0.3 0.49 10.6 0.0 2.0 2 0 0 2 2 2 0 COMM domain PK PF00224.21 gi|325969079|ref|YP_004245271.1| - 6.6e-84 281.8 0.8 8.2e-84 281.4 0.8 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|325969079|ref|YP_004245271.1| - 3.1e-16 59.7 0.0 1.6e-15 57.4 0.0 2.1 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|325969079|ref|YP_004245271.1| - 0.0021 17.2 0.6 0.0094 15.1 0.1 2.0 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family Yip1 PF04893.17 gi|325969080|ref|YP_004245272.1| - 0.0053 16.5 2.2 0.0077 16.0 2.2 1.2 1 0 0 1 1 1 1 Yip1 domain DUF2244 PF10003.9 gi|325969080|ref|YP_004245272.1| - 1.7 8.3 4.8 0.84 9.3 3.0 1.5 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Orf78 PF06024.12 gi|325969081|ref|YP_004245273.1| - 0.037 14.3 1.1 0.069 13.5 1.1 1.4 1 0 0 1 1 1 0 Orf78 (ac78) Insulin_TMD PF17870.1 gi|325969081|ref|YP_004245273.1| - 0.14 12.2 4.8 0.32 11.1 4.8 1.5 1 0 0 1 1 1 0 Insulin receptor trans-membrane segment PRA1 PF03208.19 gi|325969081|ref|YP_004245273.1| - 0.4 10.3 5.8 0.44 10.2 5.3 1.4 1 1 0 1 1 1 0 PRA1 family protein FeoB_associated PF12669.7 gi|325969081|ref|YP_004245273.1| - 1.5 9.3 3.1 3.6 8.0 3.1 1.6 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein DUF2207 PF09972.9 gi|325969081|ref|YP_004245273.1| - 1.5 7.5 3.7 2.1 7.0 3.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4349 PF14257.6 gi|325969081|ref|YP_004245273.1| - 1.8 8.0 4.8 2.6 7.4 4.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) GTP_EFTU PF00009.27 gi|325969082|ref|YP_004245274.1| - 2.4e-25 89.2 0.5 3.2e-24 85.5 0.5 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|325969082|ref|YP_004245274.1| - 8.1e-16 58.1 0.1 1.7e-15 57.0 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|325969082|ref|YP_004245274.1| - 5.9e-08 33.0 1.7 1.5e-07 31.7 1.7 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|325969082|ref|YP_004245274.1| - 0.00027 20.9 0.1 0.0043 17.0 0.2 2.3 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|325969082|ref|YP_004245274.1| - 0.00096 19.2 0.0 0.0021 18.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|325969082|ref|YP_004245274.1| - 0.0063 16.3 0.2 1.4 8.7 0.1 2.3 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|325969082|ref|YP_004245274.1| - 0.035 13.6 0.3 6.6 6.3 0.3 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|325969082|ref|YP_004245274.1| - 0.12 12.4 0.3 0.72 9.9 0.2 2.1 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain PIN_9 PF18477.1 gi|325969083|ref|YP_004245275.1| - 8.9e-14 51.8 0.0 9.8e-14 51.7 0.0 1.0 1 0 0 1 1 1 1 PIN like domain DnaB_bind PF10410.9 gi|325969083|ref|YP_004245275.1| - 0.16 12.2 0.2 1.4 9.1 0.1 2.2 2 0 0 2 2 2 0 DnaB-helicase binding domain of primase Gln-synt_C PF00120.24 gi|325969084|ref|YP_004245276.1| - 2.2e-97 326.1 0.0 2.8e-97 325.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|325969084|ref|YP_004245276.1| - 7e-12 44.9 1.4 1.5e-11 43.9 0.2 2.0 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Beta-TrCP_D PF12125.8 gi|325969084|ref|YP_004245276.1| - 0.09 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 D domain of beta-TrCP DUF2281 PF10047.9 gi|325969085|ref|YP_004245277.1| - 0.059 14.1 0.0 0.085 13.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2281) Thioredoxin PF00085.20 gi|325969086|ref|YP_004245278.1| - 3.3e-21 75.2 0.0 4e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|325969086|ref|YP_004245278.1| - 1.8e-05 25.0 0.0 0.14 12.5 0.0 2.5 1 1 1 2 2 2 2 Thioredoxin-like OST3_OST6 PF04756.13 gi|325969086|ref|YP_004245278.1| - 0.00011 21.7 0.0 0.00014 21.3 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_2 PF13098.6 gi|325969086|ref|YP_004245278.1| - 0.0003 21.2 0.3 0.0092 16.4 0.3 2.3 1 1 1 2 2 2 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|325969086|ref|YP_004245278.1| - 0.0017 18.1 0.3 0.0048 16.7 0.3 1.8 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|325969086|ref|YP_004245278.1| - 0.0083 16.2 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain TraF PF13728.6 gi|325969086|ref|YP_004245278.1| - 0.028 14.3 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Spt5-NGN PF03439.13 gi|325969086|ref|YP_004245278.1| - 0.056 13.4 0.1 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section Thioredoxin_7 PF13899.6 gi|325969086|ref|YP_004245278.1| - 0.057 13.6 0.0 0.093 12.9 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like AhpC-TSA PF00578.21 gi|325969086|ref|YP_004245278.1| - 0.069 13.1 0.1 0.24 11.3 0.1 1.8 1 1 0 1 1 1 0 AhpC/TSA family DUF2456 PF10445.9 gi|325969086|ref|YP_004245278.1| - 0.12 12.5 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2456) TatD_DNase PF01026.21 gi|325969087|ref|YP_004245279.1| - 2.8e-21 76.1 0.0 3.2e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase RNA_Me_trans PF04252.13 gi|325969088|ref|YP_004245280.1| - 0.014 15.0 0.0 0.02 14.4 0.0 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase Ribosomal_L34e PF01199.18 gi|325969089|ref|YP_004245281.1| - 1.2e-17 63.9 2.6 1.7e-17 63.5 2.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L34e zf-C4_ClpX PF06689.13 gi|325969089|ref|YP_004245281.1| - 0.0045 16.8 0.0 0.54 10.2 0.0 2.2 2 0 0 2 2 2 1 ClpX C4-type zinc finger zf-P11 PF03854.14 gi|325969089|ref|YP_004245281.1| - 0.017 14.7 0.6 1.7 8.4 0.1 2.2 2 0 0 2 2 2 0 P-11 zinc finger DUF2197 PF09963.9 gi|325969089|ref|YP_004245281.1| - 0.11 12.8 1.1 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Gin PF10764.9 gi|325969089|ref|YP_004245281.1| - 0.11 12.5 0.0 0.55 10.2 0.0 2.0 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin DUF4428 PF14471.6 gi|325969089|ref|YP_004245281.1| - 0.17 11.8 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Zn_ribbon_recom PF13408.6 gi|325969089|ref|YP_004245281.1| - 1.5 9.4 5.8 0.31 11.6 2.0 1.8 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-CCHC_2 PF13696.6 gi|325969089|ref|YP_004245281.1| - 5.4 6.9 9.0 1 9.2 2.5 2.2 2 0 0 2 2 2 0 Zinc knuckle Cytidylate_kin2 PF13189.6 gi|325969090|ref|YP_004245282.1| - 5.5e-23 82.0 5.2 2.6e-21 76.5 5.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|325969090|ref|YP_004245282.1| - 3e-16 59.8 5.3 3.1e-08 33.6 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|325969090|ref|YP_004245282.1| - 8.3e-13 49.0 0.6 1.2e-12 48.6 0.6 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|325969090|ref|YP_004245282.1| - 2.7e-12 47.3 0.2 4.2e-12 46.6 0.2 1.4 1 0 0 1 1 1 1 AAA domain PRK PF00485.18 gi|325969090|ref|YP_004245282.1| - 5.5e-06 26.3 2.1 0.0042 16.8 0.1 2.2 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family SKI PF01202.22 gi|325969090|ref|YP_004245282.1| - 3.5e-05 24.0 0.8 0.00014 22.0 0.8 1.9 1 1 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|325969090|ref|YP_004245282.1| - 5e-05 23.3 0.1 0.022 14.6 0.0 2.3 1 1 0 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|325969090|ref|YP_004245282.1| - 5.8e-05 23.4 0.3 0.00014 22.2 0.3 1.7 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|325969090|ref|YP_004245282.1| - 0.00016 21.4 1.2 0.084 12.5 0.0 2.2 1 1 1 2 2 2 2 Dephospho-CoA kinase AAA_16 PF13191.6 gi|325969090|ref|YP_004245282.1| - 0.00042 20.7 0.1 0.00067 20.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|325969090|ref|YP_004245282.1| - 0.00053 20.2 0.1 0.0011 19.1 0.1 1.8 2 1 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|325969090|ref|YP_004245282.1| - 0.0053 17.0 0.0 0.01 16.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain ADK PF00406.22 gi|325969090|ref|YP_004245282.1| - 0.0053 16.9 0.0 0.01 15.9 0.0 1.6 1 1 0 1 1 1 1 Adenylate kinase Zeta_toxin PF06414.12 gi|325969090|ref|YP_004245282.1| - 0.0082 15.4 0.1 0.022 14.0 0.0 1.7 1 1 0 1 1 1 1 Zeta toxin KTI12 PF08433.10 gi|325969090|ref|YP_004245282.1| - 0.011 15.3 0.0 0.014 14.9 0.0 1.4 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA PF00004.29 gi|325969090|ref|YP_004245282.1| - 0.012 16.0 0.0 0.021 15.2 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|325969090|ref|YP_004245282.1| - 0.05 13.5 0.2 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase TsaE PF02367.17 gi|325969090|ref|YP_004245282.1| - 0.1 12.6 0.0 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE TMEM206 PF15122.6 gi|325969092|ref|YP_004245284.1| - 0.022 13.9 1.3 0.022 13.9 1.3 1.2 1 1 0 1 1 1 0 TMEM206 protein family Memo PF01875.17 gi|325969093|ref|YP_004245285.1| - 5.8e-78 261.8 0.0 6.6e-78 261.6 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein Ribosomal_S2 PF00318.20 gi|325969094|ref|YP_004245286.1| - 7.5e-22 77.6 0.0 2.7e-14 52.9 0.1 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|325969094|ref|YP_004245286.1| - 0.038 13.6 0.2 0.057 13.0 0.2 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain Enolase_C PF00113.22 gi|325969095|ref|YP_004245287.1| - 3.4e-62 210.4 0.0 4.4e-62 210.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|325969095|ref|YP_004245287.1| - 4.6e-33 114.2 0.0 1e-32 113.1 0.0 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|325969095|ref|YP_004245287.1| - 5e-11 42.6 0.0 9.8e-11 41.6 0.0 1.4 2 0 0 2 2 2 1 Enolase C-terminal domain-like Hydrolase_3 PF08282.12 gi|325969096|ref|YP_004245288.1| - 1.9e-09 37.6 0.1 7.2e-09 35.7 0.1 1.7 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|325969096|ref|YP_004245288.1| - 1.7e-06 28.6 0.1 4.4e-06 27.2 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|325969096|ref|YP_004245288.1| - 3.4e-06 27.5 0.0 0.00023 21.5 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase YmgB PF10798.8 gi|325969096|ref|YP_004245288.1| - 0.048 13.5 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 Biofilm development protein YmgB/AriR ArsA_HSP20 PF17886.1 gi|325969097|ref|YP_004245289.1| - 3e-05 23.5 0.1 4.8e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|325969097|ref|YP_004245289.1| - 0.0032 17.6 0.2 0.086 13.0 0.2 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family TfoX_N PF04993.13 gi|325969097|ref|YP_004245289.1| - 0.13 12.5 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 TfoX N-terminal domain Carb_kinase PF01256.17 gi|325969098|ref|YP_004245290.1| - 1.2e-50 172.3 1.3 1.6e-50 171.8 1.3 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|325969098|ref|YP_004245290.1| - 1.6e-41 142.1 0.0 3.4e-41 141.0 0.0 1.6 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|325969098|ref|YP_004245290.1| - 6.5e-07 29.0 1.1 1.4e-06 27.9 1.1 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|325969098|ref|YP_004245290.1| - 0.0029 17.0 0.1 0.0053 16.2 0.1 1.4 1 1 0 1 1 1 1 Phosphomethylpyrimidine kinase YwiC PF14256.6 gi|325969100|ref|YP_004245292.1| - 0.012 15.9 4.4 0.012 15.9 4.4 2.9 2 2 1 3 3 3 0 YwiC-like protein DUF2570 PF10828.8 gi|325969101|ref|YP_004245293.1| - 0.011 15.5 6.5 0.016 15.0 1.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2570) Viral_Beta_CD PF04530.12 gi|325969101|ref|YP_004245293.1| - 0.015 15.6 9.1 0.46 10.8 1.2 2.9 1 1 1 3 3 3 0 Viral Beta C/D like family Mer2 PF09074.10 gi|325969101|ref|YP_004245293.1| - 0.033 14.0 2.0 0.051 13.4 2.0 1.3 1 0 0 1 1 1 0 Mer2 LRAT PF04970.13 gi|325969101|ref|YP_004245293.1| - 0.034 14.5 0.9 0.058 13.7 0.9 1.3 1 0 0 1 1 1 0 Lecithin retinol acyltransferase PEPCK_GTP PF00821.18 gi|325969102|ref|YP_004245294.1| - 2.3e-110 368.8 0.0 2.9e-110 368.5 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|325969102|ref|YP_004245294.1| - 2e-63 213.9 0.0 2.7e-63 213.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain DEAD PF00270.29 gi|325969103|ref|YP_004245295.1| - 4e-42 143.9 0.0 9.1e-42 142.8 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|325969103|ref|YP_004245295.1| - 6.5e-30 103.7 0.0 4.9e-27 94.5 0.1 2.3 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|325969103|ref|YP_004245295.1| - 1.9e-05 24.8 0.0 3.2e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|325969103|ref|YP_004245295.1| - 0.042 13.1 0.0 0.087 12.0 0.0 1.5 2 0 0 2 2 2 0 ERCC3/RAD25/XPB C-terminal helicase Flavi_DEAD PF07652.14 gi|325969103|ref|YP_004245295.1| - 0.078 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Flavivirus DEAD domain OrfB_Zn_ribbon PF07282.11 gi|325969104|ref|YP_004245296.1| - 1.9e-10 40.5 0.0 4.5e-10 39.3 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF4776 PF16003.5 gi|325969104|ref|YP_004245296.1| - 0.00063 18.9 0.6 0.00086 18.4 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4776) zinc_ribbon_2 PF13240.6 gi|325969104|ref|YP_004245296.1| - 0.0016 18.1 2.7 0.02 14.6 2.7 2.1 1 1 0 1 1 1 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|325969104|ref|YP_004245296.1| - 0.014 15.4 1.2 2.7 8.1 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.6 gi|325969104|ref|YP_004245296.1| - 0.022 14.7 0.7 0.036 14.0 0.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|325969104|ref|YP_004245296.1| - 0.025 14.2 1.3 0.046 13.4 1.3 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|325969104|ref|YP_004245296.1| - 0.033 14.2 0.6 0.054 13.5 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon RPA_interact_C PF14768.6 gi|325969104|ref|YP_004245296.1| - 0.055 14.0 0.5 0.099 13.2 0.5 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal NB-ARC PF00931.22 gi|325969104|ref|YP_004245296.1| - 0.069 12.3 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DNA_RNApol_7kD PF03604.13 gi|325969104|ref|YP_004245296.1| - 0.069 12.8 0.7 0.17 11.6 0.7 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|325969104|ref|YP_004245296.1| - 0.11 12.7 1.9 0.52 10.5 1.9 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Polyoma_agno PF01736.16 gi|325969104|ref|YP_004245296.1| - 0.11 12.2 0.2 0.33 10.7 0.2 1.8 2 0 0 2 2 2 0 Polyomavirus agnoprotein HypA PF01155.19 gi|325969104|ref|YP_004245296.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_IS605 PF01385.19 gi|325969104|ref|YP_004245296.1| - 0.21 11.8 1.5 0.47 10.7 1.5 1.5 1 0 0 1 1 1 0 Probable transposase zf-Mss51 PF13824.6 gi|325969104|ref|YP_004245296.1| - 0.26 11.4 0.7 0.52 10.5 0.7 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|325969104|ref|YP_004245296.1| - 0.32 10.5 4.4 0.87 9.1 4.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.6 gi|325969104|ref|YP_004245296.1| - 0.33 11.0 3.8 4.3 7.4 3.3 2.2 1 1 1 2 2 2 0 YhfH-like protein zf-IS66 PF13005.7 gi|325969104|ref|YP_004245296.1| - 0.86 10.1 2.5 16 6.0 0.1 2.6 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Auto_anti-p27 PF06677.12 gi|325969104|ref|YP_004245296.1| - 0.97 9.6 3.1 1.7 8.9 3.1 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|325969104|ref|YP_004245296.1| - 1.3 9.0 3.6 16 5.6 3.5 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|325969104|ref|YP_004245296.1| - 2 7.8 4.8 11 5.5 4.8 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger OrfB_Zn_ribbon PF07282.11 gi|325969105|ref|YP_004245297.1| - 2.9e-19 68.7 0.0 3.9e-19 68.3 0.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain CpXC PF14353.6 gi|325969105|ref|YP_004245297.1| - 0.0095 16.0 0.1 0.83 9.7 0.0 2.1 2 0 0 2 2 2 1 CpXC protein C1_2 PF03107.16 gi|325969105|ref|YP_004245297.1| - 0.066 13.5 0.0 0.086 13.2 0.0 1.3 1 0 0 1 1 1 0 C1 domain Glycos_transf_1 PF00534.20 gi|325969105|ref|YP_004245297.1| - 0.08 12.5 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferases group 1 zinc_ribbon_4 PF13717.6 gi|325969105|ref|YP_004245297.1| - 0.23 11.4 5.0 3.8 7.5 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon domain NTP_transf_2 PF01909.23 gi|325969106|ref|YP_004245298.1| - 3.5e-10 40.0 0.0 3.9e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|325969106|ref|YP_004245298.1| - 1.1e-07 31.9 0.0 1.4e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|325969106|ref|YP_004245298.1| - 0.012 15.5 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MFS_1 PF07690.16 gi|325969109|ref|YP_004245301.1| - 6.2e-29 101.0 70.0 1e-18 67.4 29.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|325969109|ref|YP_004245301.1| - 2.2e-07 30.1 15.7 2.2e-07 30.1 15.7 2.9 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|325969109|ref|YP_004245301.1| - 0.0015 17.4 0.6 0.0015 17.4 0.6 5.0 2 2 3 5 5 5 3 MFS_1 like family ThiF PF00899.21 gi|325969110|ref|YP_004245302.1| - 1.4e-61 208.0 0.1 1.7e-61 207.7 0.1 1.0 1 0 0 1 1 1 1 ThiF family Shikimate_DH PF01488.20 gi|325969110|ref|YP_004245302.1| - 0.0054 16.8 0.2 0.014 15.5 0.1 1.7 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase DHH PF01368.20 gi|325969111|ref|YP_004245303.1| - 0.01 16.0 0.0 0.04 14.1 0.0 1.9 1 1 0 1 1 1 0 DHH family DHHA1 PF02272.19 gi|325969111|ref|YP_004245303.1| - 0.015 15.7 0.0 0.043 14.2 0.0 1.9 2 0 0 2 2 2 0 DHHA1 domain UPRTase PF14681.6 gi|325969112|ref|YP_004245304.1| - 3.9e-49 166.9 0.2 4.7e-49 166.6 0.2 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|325969112|ref|YP_004245304.1| - 6e-09 35.6 0.7 1.1e-08 34.8 0.7 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain NAD_binding_7 PF13241.6 gi|325969113|ref|YP_004245305.1| - 2.9e-24 85.5 0.1 5.6e-24 84.6 0.0 1.5 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|325969113|ref|YP_004245305.1| - 3.3e-07 30.6 0.1 7.1e-07 29.5 0.1 1.5 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|325969113|ref|YP_004245305.1| - 0.00034 20.0 0.0 0.00057 19.2 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3Beta_HSD PF01073.19 gi|325969113|ref|YP_004245305.1| - 0.00059 18.9 0.0 0.00087 18.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|325969113|ref|YP_004245305.1| - 0.001 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family NAD_binding_10 PF13460.6 gi|325969113|ref|YP_004245305.1| - 0.0021 18.0 0.0 0.0029 17.5 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding PrkA PF06798.12 gi|325969113|ref|YP_004245305.1| - 0.0026 17.4 0.2 0.0072 16.0 0.1 1.6 1 1 0 1 1 1 1 PrkA serine protein kinase C-terminal domain FAD_binding_2 PF00890.24 gi|325969113|ref|YP_004245305.1| - 0.0079 15.3 0.1 0.011 14.9 0.1 1.3 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.18 gi|325969113|ref|YP_004245305.1| - 0.1 12.4 0.3 0.27 11.1 0.3 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ThiI PF02568.14 gi|325969113|ref|YP_004245305.1| - 0.11 12.0 0.0 0.47 10.0 0.0 1.9 1 1 1 2 2 2 0 Thiamine biosynthesis protein (ThiI) Pyr_redox_3 PF13738.6 gi|325969113|ref|YP_004245305.1| - 0.14 11.4 0.0 0.26 10.5 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Abhydrolase_5 PF12695.7 gi|325969114|ref|YP_004245306.1| - 0.16 11.7 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family ECH_1 PF00378.20 gi|325969115|ref|YP_004245307.1| - 7.1e-26 91.0 0.0 1e-25 90.5 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|325969115|ref|YP_004245307.1| - 9.9e-13 48.3 0.0 1.9e-12 47.3 0.0 1.4 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase CLP_protease PF00574.23 gi|325969115|ref|YP_004245307.1| - 0.16 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 Clp protease Transp_cyt_pur PF02133.15 gi|325969116|ref|YP_004245308.1| - 4e-61 207.1 48.5 5.1e-61 206.8 48.5 1.1 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AA_kinase PF00696.28 gi|325969117|ref|YP_004245309.1| - 4.1e-28 98.6 0.0 9.3e-28 97.4 0.0 1.5 1 1 0 1 1 1 1 Amino acid kinase family LysR_substrate PF03466.20 gi|325969117|ref|YP_004245309.1| - 0.16 11.3 0.1 0.32 10.3 0.1 1.4 1 0 0 1 1 1 0 LysR substrate binding domain Gar1 PF04410.14 gi|325969118|ref|YP_004245310.1| - 1.8e-06 27.8 0.0 1.9e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TF_Zn_Ribbon PF08271.12 gi|325969119|ref|YP_004245311.1| - 5.6e-19 67.4 0.4 9.9e-19 66.6 0.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|325969119|ref|YP_004245311.1| - 5.5e-14 52.0 0.3 7.4e-08 32.3 0.1 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Ribosomal_S27e PF01667.17 gi|325969119|ref|YP_004245311.1| - 0.00067 19.3 0.3 0.0013 18.4 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 zf-ribbon_3 PF13248.6 gi|325969119|ref|YP_004245311.1| - 0.0012 18.2 0.4 0.74 9.3 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Cyclin_N PF00134.23 gi|325969119|ref|YP_004245311.1| - 0.014 15.2 1.0 0.39 10.5 0.1 2.2 1 1 0 2 2 2 0 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|325969119|ref|YP_004245311.1| - 0.021 14.7 0.3 0.043 13.7 0.3 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|325969119|ref|YP_004245311.1| - 0.022 14.7 0.8 0.073 13.1 0.8 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|325969119|ref|YP_004245311.1| - 0.03 14.1 0.6 1.1 9.1 0.8 2.4 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|325969119|ref|YP_004245311.1| - 0.035 13.8 1.1 5.6 6.7 0.1 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 SBDS_C PF09377.10 gi|325969119|ref|YP_004245311.1| - 0.055 13.5 0.0 0.1 12.6 0.0 1.5 1 1 0 1 1 1 0 SBDS protein C-terminal domain Zn_ribbon_SprT PF17283.2 gi|325969119|ref|YP_004245311.1| - 0.064 13.2 0.2 0.21 11.5 0.2 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Trm112p PF03966.16 gi|325969119|ref|YP_004245311.1| - 0.12 13.0 2.1 12 6.5 0.1 2.8 2 1 1 3 3 3 0 Trm112p-like protein DUF35_N PF12172.8 gi|325969119|ref|YP_004245311.1| - 0.14 12.1 1.1 2.3 8.2 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|325969119|ref|YP_004245311.1| - 0.15 11.8 0.8 3.9 7.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|325969119|ref|YP_004245311.1| - 0.3 11.2 2.0 3.4 7.9 2.1 2.3 1 1 2 3 3 3 0 Zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|325969119|ref|YP_004245311.1| - 1.1 9.6 3.2 5.2 7.4 3.2 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase RNA_pol_Rpc34 PF05158.12 gi|325969120|ref|YP_004245312.1| - 1.6e-06 27.7 0.2 0.0011 18.4 0.2 2.1 1 1 0 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.22 gi|325969120|ref|YP_004245312.1| - 4.4e-05 23.3 0.0 7.7e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|325969120|ref|YP_004245312.1| - 0.0044 17.5 0.0 0.013 15.9 0.0 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|325969120|ref|YP_004245312.1| - 0.024 14.5 0.0 0.074 13.0 0.0 1.8 2 0 0 2 2 2 0 MarR family B-block_TFIIIC PF04182.12 gi|325969120|ref|YP_004245312.1| - 0.034 14.3 0.0 0.079 13.1 0.0 1.8 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC MBOAT PF03062.19 gi|325969120|ref|YP_004245312.1| - 0.19 11.0 0.0 0.24 10.7 0.0 1.1 1 0 0 1 1 1 0 MBOAT, membrane-bound O-acyltransferase family LigT_PEase PF02834.16 gi|325969121|ref|YP_004245313.1| - 1.6e-29 101.9 0.0 8.7e-20 70.7 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|325969121|ref|YP_004245313.1| - 2.1e-12 47.2 0.0 2.5e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|325969121|ref|YP_004245313.1| - 4.2e-09 36.6 0.0 9.9e-09 35.4 0.0 1.6 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain NPCBM_assoc PF10633.9 gi|325969124|ref|YP_004245316.1| - 3e-14 53.0 0.1 0.00081 19.6 0.0 6.3 6 0 0 6 6 6 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|325969124|ref|YP_004245316.1| - 3e-06 27.4 9.6 0.011 16.0 0.0 4.5 5 0 0 5 5 5 2 CARDB DUF11 PF01345.18 gi|325969124|ref|YP_004245316.1| - 0.02 15.2 14.2 0.13 12.6 0.2 4.1 3 2 0 3 3 3 0 Domain of unknown function DUF11 DUF5305 PF17231.2 gi|325969124|ref|YP_004245316.1| - 0.031 13.7 0.0 0.031 13.7 0.0 2.9 4 0 0 4 4 4 0 Family of unknown function (DUF5305) Mycobact_memb PF05423.13 gi|325969124|ref|YP_004245316.1| - 0.034 14.1 0.0 0.1 12.6 0.0 1.8 1 0 0 1 1 1 0 Mycobacterium membrane protein NS3_envE PF02723.14 gi|325969124|ref|YP_004245316.1| - 0.098 12.8 4.7 0.29 11.2 4.7 1.8 1 0 0 1 1 1 0 Non-structural protein NS3/Small envelope protein E DUF4834 PF16118.5 gi|325969124|ref|YP_004245316.1| - 0.21 12.6 0.6 0.36 11.8 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4834) MFS_1 PF07690.16 gi|325969125|ref|YP_004245317.1| - 3.5e-47 161.0 43.6 3.5e-47 161.0 43.6 2.1 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|325969125|ref|YP_004245317.1| - 1.1e-12 47.6 7.9 1.1e-12 47.6 7.9 3.7 2 1 0 3 3 3 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|325969125|ref|YP_004245317.1| - 0.00024 19.6 20.8 0.0099 14.3 12.2 2.5 2 1 0 2 2 2 2 Transmembrane secretion effector DUF2243 PF10002.9 gi|325969125|ref|YP_004245317.1| - 0.011 15.9 0.6 0.011 15.9 0.6 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2243) UPF0444 PF15475.6 gi|325969125|ref|YP_004245317.1| - 0.014 15.7 0.9 0.057 13.7 0.9 2.1 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 MFS_2 PF13347.6 gi|325969125|ref|YP_004245317.1| - 1.9 6.9 52.5 0.015 13.9 5.8 4.0 2 1 2 4 4 4 0 MFS/sugar transport protein AIRS PF00586.24 gi|325969126|ref|YP_004245318.1| - 1.8e-10 41.3 0.0 3.1e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HTH_56 PF18662.1 gi|325969127|ref|YP_004245319.1| - 0.098 12.7 0.1 0.18 11.9 0.1 1.6 1 1 0 1 1 1 0 Cch helix turn helix domain DUF92 PF01940.16 gi|325969128|ref|YP_004245320.1| - 9.5e-57 192.1 3.0 1.2e-56 191.8 3.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF92 zf-HIT PF04438.16 gi|325969128|ref|YP_004245320.1| - 0.015 15.2 0.2 0.024 14.5 0.2 1.3 1 0 0 1 1 1 0 HIT zinc finger Elf1 PF05129.13 gi|325969129|ref|YP_004245321.1| - 2e-19 69.4 0.0 2.8e-19 68.9 0.0 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-RING_7 PF02591.15 gi|325969129|ref|YP_004245321.1| - 0.0023 18.1 0.4 0.19 11.9 0.0 2.4 2 0 0 2 2 2 1 C4-type zinc ribbon domain Lar_restr_allev PF14354.6 gi|325969129|ref|YP_004245321.1| - 0.0035 17.7 0.3 0.0064 16.8 0.3 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|325969129|ref|YP_004245321.1| - 0.019 14.4 1.6 0.051 13.1 1.6 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|325969129|ref|YP_004245321.1| - 0.032 13.6 5.4 0.21 11.0 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|325969129|ref|YP_004245321.1| - 0.034 14.0 0.4 0.25 11.2 0.5 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|325969129|ref|YP_004245321.1| - 0.053 13.6 0.2 0.087 12.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|325969129|ref|YP_004245321.1| - 0.065 13.0 4.2 0.14 11.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|325969129|ref|YP_004245321.1| - 0.11 12.7 1.5 0.21 11.8 1.5 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.6 gi|325969129|ref|YP_004245321.1| - 0.13 12.2 0.4 0.27 11.2 0.4 1.5 1 1 0 1 1 1 0 Nudix N-terminal zinc_ribbon_5 PF13719.6 gi|325969129|ref|YP_004245321.1| - 0.13 12.0 0.4 0.25 11.1 0.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Vps36-NZF-N PF16988.5 gi|325969129|ref|YP_004245321.1| - 0.26 10.7 0.9 0.65 9.4 0.9 1.7 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Zn_ribbon_recom PF13408.6 gi|325969129|ref|YP_004245321.1| - 0.42 11.2 2.6 3.8 8.1 2.0 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.6 gi|325969129|ref|YP_004245321.1| - 0.44 11.2 0.1 0.44 11.2 0.1 2.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Rubredoxin PF00301.20 gi|325969129|ref|YP_004245321.1| - 0.45 10.6 0.3 0.45 10.6 0.3 2.4 3 0 0 3 3 3 0 Rubredoxin zf-Mss51 PF13824.6 gi|325969129|ref|YP_004245321.1| - 0.69 10.1 2.9 2.3 8.4 0.4 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2HC5 PF06221.13 gi|325969129|ref|YP_004245321.1| - 0.98 9.5 3.6 3.9 7.5 0.1 2.3 1 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.10 gi|325969129|ref|YP_004245321.1| - 1.1 9.4 3.5 2 8.6 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|325969129|ref|YP_004245321.1| - 1.5 8.8 4.1 16 5.5 4.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain PcrB PF01884.17 gi|325969130|ref|YP_004245322.1| - 7.6e-57 192.3 0.0 9.3e-57 192.1 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|325969130|ref|YP_004245322.1| - 1.9e-11 43.9 0.0 4e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|325969130|ref|YP_004245322.1| - 3.4e-05 22.8 0.1 6e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Dus PF01207.17 gi|325969130|ref|YP_004245322.1| - 0.00012 21.3 0.1 0.00032 19.9 0.0 1.7 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|325969130|ref|YP_004245322.1| - 0.00031 20.1 0.1 0.041 13.2 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IMPDH PF00478.25 gi|325969130|ref|YP_004245322.1| - 0.0014 17.7 0.0 0.019 14.0 0.0 2.0 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|325969130|ref|YP_004245322.1| - 0.004 16.6 0.0 0.0074 15.7 0.0 1.4 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator NanE PF04131.14 gi|325969130|ref|YP_004245322.1| - 0.02 14.1 0.0 0.16 11.1 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|325969130|ref|YP_004245322.1| - 0.029 13.7 0.0 0.063 12.6 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|325969130|ref|YP_004245322.1| - 0.045 13.0 0.0 0.062 12.5 0.0 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Sec61_beta PF03911.16 gi|325969131|ref|YP_004245323.1| - 1.3e-12 47.5 1.6 1.5e-12 47.3 1.6 1.1 1 0 0 1 1 1 1 Sec61beta family EFF-AFF PF14884.6 gi|325969131|ref|YP_004245323.1| - 0.19 9.8 0.5 0.18 9.9 0.5 1.0 1 0 0 1 1 1 0 Type I membrane glycoproteins cell-cell fusogen zf-ZPR1 PF03367.13 gi|325969132|ref|YP_004245324.1| - 1.8e-32 112.4 0.0 2.1e-32 112.2 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain CpXC PF14353.6 gi|325969132|ref|YP_004245324.1| - 0.16 12.0 0.3 1.1 9.3 0.3 2.0 1 1 0 1 1 1 0 CpXC protein zf-C2HC_2 PF13913.6 gi|325969132|ref|YP_004245324.1| - 9.7 6.2 5.9 7.6 6.6 0.5 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TraQ PF09679.10 gi|325969133|ref|YP_004245325.1| - 0.19 11.6 2.6 0.16 11.9 0.9 1.7 1 1 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) HIT PF01230.23 gi|325969134|ref|YP_004245326.1| - 1.5e-28 99.4 0.5 2e-28 99.0 0.5 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|325969134|ref|YP_004245326.1| - 2.3e-16 60.3 0.4 2.9e-16 60.0 0.4 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|325969134|ref|YP_004245326.1| - 0.013 15.3 1.4 0.024 14.5 1.4 1.4 1 1 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 PrgI PF12666.7 gi|325969135|ref|YP_004245327.1| - 0.24 12.1 12.2 0.4 11.4 12.0 1.6 1 1 0 1 1 1 0 PrgI family protein Oxidored_q2 PF00420.24 gi|325969135|ref|YP_004245327.1| - 1.1 8.9 12.2 1.7 8.3 12.2 1.4 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF883 PF05957.13 gi|325969135|ref|YP_004245327.1| - 1.4 9.5 3.7 3 8.5 0.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF2626 PF11117.8 gi|325969135|ref|YP_004245327.1| - 1.5 9.6 6.4 1.8 9.4 5.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2626) DUF1700 PF08006.11 gi|325969135|ref|YP_004245327.1| - 2.6 7.5 12.7 3.3 7.2 12.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF3487 PF11990.8 gi|325969135|ref|YP_004245327.1| - 7.3 6.5 10.8 2.9 7.8 7.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) TINF2_N PF14973.6 gi|325969136|ref|YP_004245328.1| - 0.044 14.1 0.0 0.092 13.1 0.0 1.5 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus MoeA_N PF03453.17 gi|325969137|ref|YP_004245329.1| - 1.4e-32 112.6 0.2 2.6e-31 108.5 0.0 2.2 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|325969137|ref|YP_004245329.1| - 4.5e-23 81.5 0.2 8.4e-23 80.6 0.2 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|325969137|ref|YP_004245329.1| - 0.00013 22.1 0.0 0.00032 20.8 0.0 1.7 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) S4_2 PF13275.6 gi|325969137|ref|YP_004245329.1| - 0.073 12.9 0.0 0.28 11.0 0.0 2.0 1 0 0 1 1 1 0 S4 domain Herpes_teg_N PF04843.12 gi|325969138|ref|YP_004245330.1| - 0.064 13.0 0.0 0.074 12.7 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus tegument protein, N-terminal conserved region DUF4417 PF14386.6 gi|325969139|ref|YP_004245331.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4417) HmuY PF14064.6 gi|325969140|ref|YP_004245332.1| - 0.048 13.9 0.2 0.097 12.9 0.2 1.4 1 0 0 1 1 1 0 HmuY protein ABC2_membrane_3 PF12698.7 gi|325969140|ref|YP_004245332.1| - 4.2 6.4 5.7 0.83 8.7 2.0 1.7 2 0 0 2 2 2 0 ABC-2 family transporter protein Cren7 PF11520.8 gi|325969141|ref|YP_004245333.1| - 3.8e-13 49.1 1.5 4.7e-13 48.9 1.5 1.1 1 0 0 1 1 1 1 Chromatin protein Cren7 Sugar_tr PF00083.24 gi|325969142|ref|YP_004245334.1| - 3.6e-10 39.3 2.5 4.2e-10 39.1 2.5 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325969142|ref|YP_004245334.1| - 5.6e-07 28.8 9.6 6.4e-07 28.6 9.6 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily PrsW-protease PF13367.6 gi|325969144|ref|YP_004245336.1| - 0.028 13.9 0.9 0.03 13.8 0.9 1.1 1 0 0 1 1 1 0 PrsW family intramembrane metalloprotease POR PF01558.18 gi|325969145|ref|YP_004245337.1| - 1.7e-33 116.2 0.3 2e-33 116.0 0.3 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase IstB_IS21 PF01695.17 gi|325969145|ref|YP_004245337.1| - 0.14 11.8 0.1 0.21 11.3 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TPP_enzyme_C PF02775.21 gi|325969146|ref|YP_004245338.1| - 2.9e-22 79.1 0.6 8.9e-22 77.5 0.6 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|325969146|ref|YP_004245338.1| - 6.2e-14 52.3 0.1 1.4e-13 51.1 0.0 1.6 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|325969146|ref|YP_004245338.1| - 5.5e-11 41.8 12.4 1.2e-07 31.2 4.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325969146|ref|YP_004245338.1| - 1.3e-09 37.6 14.5 1.6e-05 24.7 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|325969146|ref|YP_004245338.1| - 4.3e-07 29.7 16.3 7.1e-05 22.7 4.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|325969146|ref|YP_004245338.1| - 2.1e-06 27.5 0.2 0.051 13.2 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|325969146|ref|YP_004245338.1| - 3.2e-06 27.0 0.3 1.5e-05 24.9 0.1 2.1 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4_21 PF14697.6 gi|325969146|ref|YP_004245338.1| - 1.5e-05 25.0 9.6 3.3e-05 23.9 9.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325969146|ref|YP_004245338.1| - 0.00019 21.4 12.8 0.0039 17.3 2.9 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325969146|ref|YP_004245338.1| - 0.00038 21.0 12.9 0.022 15.3 12.4 2.7 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325969146|ref|YP_004245338.1| - 0.0015 19.4 6.5 0.0028 18.6 0.9 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|325969146|ref|YP_004245338.1| - 0.0016 18.6 10.8 0.0052 16.9 10.7 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain SAM_adeno_trans PF01887.16 gi|325969146|ref|YP_004245338.1| - 0.029 13.8 0.0 0.048 13.1 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl-l-methionine hydroxide adenosyltransferase Fer4_15 PF13459.6 gi|325969146|ref|YP_004245338.1| - 0.12 13.1 4.2 1.7 9.5 0.5 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|325969146|ref|YP_004245338.1| - 1.7 9.3 13.3 1 10.0 4.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|325969146|ref|YP_004245338.1| - 2.2 8.9 10.8 0.73 10.4 1.9 2.5 1 1 3 4 4 4 0 4Fe-4S dicluster domain CarboxypepD_reg PF13620.6 gi|325969147|ref|YP_004245339.1| - 3.2e-09 36.9 9.9 0.00065 19.9 1.3 5.4 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain Alpha_adaptinC2 PF02883.20 gi|325969147|ref|YP_004245339.1| - 0.0024 18.1 0.7 0.12 12.6 0.1 2.7 2 0 0 2 2 2 1 Adaptin C-terminal domain Big_1 PF02369.16 gi|325969147|ref|YP_004245339.1| - 0.007 16.3 0.5 0.007 16.3 0.5 3.4 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 1) SdrD_B PF17210.3 gi|325969147|ref|YP_004245339.1| - 0.039 14.2 2.6 0.44 10.8 0.4 3.2 3 0 0 3 3 3 0 SdrD B-like domain DUF2135 PF09906.9 gi|325969147|ref|YP_004245339.1| - 1.3 9.4 5.2 30 5.0 0.1 3.4 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2135) DUF5516 PF17637.2 gi|325969148|ref|YP_004245340.1| - 0.19 11.5 1.7 4.1 7.2 0.4 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5516) Myc-LZ PF02344.15 gi|325969148|ref|YP_004245340.1| - 0.21 11.7 4.5 7.2 6.8 0.9 3.0 3 0 0 3 3 3 0 Myc leucine zipper domain RHH_1 PF01402.21 gi|325969150|ref|YP_004245342.1| - 0.00019 21.3 0.3 0.0034 17.2 0.0 3.1 4 0 0 4 4 4 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|325969150|ref|YP_004245342.1| - 0.017 15.9 0.0 0.031 15.0 0.0 1.4 1 0 0 1 1 1 0 Rv0623-like transcription factor GFO_IDH_MocA PF01408.22 gi|325969151|ref|YP_004245343.1| - 1.4e-15 58.1 0.0 2.5e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|325969151|ref|YP_004245343.1| - 0.0012 19.1 0.5 0.015 15.6 0.1 2.2 2 0 0 2 2 2 1 TrkA-N domain ADH_zinc_N PF00107.26 gi|325969151|ref|YP_004245343.1| - 0.015 15.3 0.0 0.04 13.9 0.0 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase CoA_binding PF02629.19 gi|325969151|ref|YP_004245343.1| - 0.04 14.6 0.0 0.1 13.3 0.0 1.7 1 0 0 1 1 1 0 CoA binding domain GFO_IDH_MocA_C PF02894.17 gi|325969151|ref|YP_004245343.1| - 0.088 12.8 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain MazE_antitoxin PF04014.18 gi|325969153|ref|YP_004245345.1| - 0.0003 20.6 0.9 0.0083 16.0 0.1 2.4 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325969153|ref|YP_004245345.1| - 0.044 14.2 0.0 0.64 10.5 0.0 2.0 1 1 1 2 2 2 0 prlF antitoxin for toxin YhaV_toxin Sacchrp_dh_C PF16653.5 gi|325969155|ref|YP_004245347.1| - 1.6e-24 87.5 0.0 2.1e-24 87.1 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain NAD_binding_2 PF03446.15 gi|325969155|ref|YP_004245347.1| - 6.6e-07 29.6 0.1 1.4e-06 28.6 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|325969155|ref|YP_004245347.1| - 1.9e-06 28.1 0.2 1.3e-05 25.5 0.1 2.3 2 0 0 2 2 2 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|325969155|ref|YP_004245347.1| - 3.6e-05 24.0 0.1 7.9e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|325969155|ref|YP_004245347.1| - 3.7e-05 24.2 0.3 9.3e-05 22.9 0.1 1.8 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|325969155|ref|YP_004245347.1| - 3.8e-05 23.6 0.2 0.00011 22.2 0.2 1.8 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|325969155|ref|YP_004245347.1| - 0.0005 20.5 0.0 0.00088 19.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|325969155|ref|YP_004245347.1| - 0.0024 17.8 0.0 0.0072 16.3 0.0 1.8 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DapB_N PF01113.20 gi|325969155|ref|YP_004245347.1| - 0.0063 16.6 0.2 0.013 15.6 0.2 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_8 PF13450.6 gi|325969155|ref|YP_004245347.1| - 0.0091 16.2 0.1 6.9 7.0 0.0 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Rossmann-like PF10727.9 gi|325969155|ref|YP_004245347.1| - 0.015 15.1 0.3 0.034 14.0 0.3 1.6 1 0 0 1 1 1 0 Rossmann-like domain PDH PF02153.17 gi|325969155|ref|YP_004245347.1| - 0.018 14.1 0.2 0.14 11.1 0.1 2.2 2 0 0 2 2 2 0 Prephenate dehydrogenase ApbA PF02558.16 gi|325969155|ref|YP_004245347.1| - 0.031 13.9 0.3 0.062 13.0 0.1 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|325969155|ref|YP_004245347.1| - 0.049 13.2 0.0 0.12 12.0 0.0 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LpxI_N PF17930.1 gi|325969155|ref|YP_004245347.1| - 0.063 13.2 0.1 0.19 11.7 0.0 1.8 2 0 0 2 2 2 0 LpxI N-terminal domain 2-Hacid_dh_C PF02826.19 gi|325969155|ref|YP_004245347.1| - 0.067 12.5 0.1 0.13 11.6 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ABC_tran PF00005.27 gi|325969156|ref|YP_004245348.1| - 1.1e-37 129.6 0.0 9.4e-18 65.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|325969156|ref|YP_004245348.1| - 1.7e-12 46.9 3.8 1.7e-12 46.9 3.8 1.9 2 0 0 2 2 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|325969156|ref|YP_004245348.1| - 7.8e-12 45.6 0.3 0.0024 17.8 0.0 4.2 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325969156|ref|YP_004245348.1| - 3.8e-09 36.3 4.9 0.0004 19.9 0.3 3.4 2 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|325969156|ref|YP_004245348.1| - 1.3e-06 28.0 3.2 1.3e-06 28.0 3.2 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain AAA PF00004.29 gi|325969156|ref|YP_004245348.1| - 1.4e-05 25.5 0.0 0.069 13.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325969156|ref|YP_004245348.1| - 1.9e-05 25.1 0.1 0.0028 18.1 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain Fer4_21 PF14697.6 gi|325969156|ref|YP_004245348.1| - 1.9e-05 24.7 7.9 3.3e-05 23.9 7.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain RuvB_N PF05496.12 gi|325969156|ref|YP_004245348.1| - 0.00017 21.3 0.1 0.9 9.3 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain Fer4_6 PF12837.7 gi|325969156|ref|YP_004245348.1| - 0.00037 20.4 12.6 0.0061 16.6 3.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_24 PF13479.6 gi|325969156|ref|YP_004245348.1| - 0.00046 20.0 0.1 0.12 12.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|325969156|ref|YP_004245348.1| - 0.00057 19.7 0.0 0.48 10.1 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain RecA PF00154.21 gi|325969156|ref|YP_004245348.1| - 0.001 18.6 0.0 0.053 13.0 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein RNA_helicase PF00910.22 gi|325969156|ref|YP_004245348.1| - 0.0012 19.2 0.0 0.44 11.0 0.0 2.5 2 0 0 2 2 2 1 RNA helicase AAA_33 PF13671.6 gi|325969156|ref|YP_004245348.1| - 0.0023 18.1 0.0 0.73 10.0 0.0 2.9 2 1 0 2 2 2 1 AAA domain Lactococcin PF04369.13 gi|325969156|ref|YP_004245348.1| - 0.0024 18.0 0.1 1 9.6 0.0 2.5 2 0 0 2 2 2 1 Lactococcin-like family AAA_18 PF13238.6 gi|325969156|ref|YP_004245348.1| - 0.0028 18.2 0.1 1.2 9.7 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|325969156|ref|YP_004245348.1| - 0.0039 17.5 0.0 0.24 11.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|325969156|ref|YP_004245348.1| - 0.0051 16.8 0.3 5.8 7.0 0.0 3.1 3 0 0 3 3 2 0 AAA domain NACHT PF05729.12 gi|325969156|ref|YP_004245348.1| - 0.0052 16.7 0.0 0.32 10.9 0.0 2.4 2 0 0 2 2 2 1 NACHT domain Fer4_10 PF13237.6 gi|325969156|ref|YP_004245348.1| - 0.0063 16.6 10.1 0.018 15.1 10.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain ATP-synt_ab PF00006.25 gi|325969156|ref|YP_004245348.1| - 0.0063 16.2 0.3 11 5.6 0.0 3.2 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.17 gi|325969156|ref|YP_004245348.1| - 0.01 15.9 0.0 0.2 11.7 0.0 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|325969156|ref|YP_004245348.1| - 0.011 16.3 0.2 4.9 7.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|325969156|ref|YP_004245348.1| - 0.016 15.0 0.1 1.1 9.1 0.0 2.7 3 0 0 3 3 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop TsaE PF02367.17 gi|325969156|ref|YP_004245348.1| - 0.034 14.1 0.1 1.6 8.8 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PRK PF00485.18 gi|325969156|ref|YP_004245348.1| - 0.058 13.1 0.0 1.4 8.6 0.0 2.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|325969156|ref|YP_004245348.1| - 0.06 13.3 0.6 13 5.7 0.0 2.9 4 0 0 4 4 2 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|325969156|ref|YP_004245348.1| - 0.061 12.9 0.0 0.54 9.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|325969156|ref|YP_004245348.1| - 0.067 12.4 1.4 2 7.5 0.1 2.6 2 1 0 2 2 2 0 NB-ARC domain Fer4_9 PF13187.6 gi|325969156|ref|YP_004245348.1| - 0.084 13.1 8.7 0.054 13.7 2.7 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Zeta_toxin PF06414.12 gi|325969156|ref|YP_004245348.1| - 0.1 11.8 0.1 24 4.1 0.0 3.1 3 0 0 3 3 3 0 Zeta toxin RsgA_GTPase PF03193.16 gi|325969156|ref|YP_004245348.1| - 0.13 12.2 0.1 11 5.9 0.0 2.8 3 0 0 3 3 3 0 RsgA GTPase MobB PF03205.14 gi|325969156|ref|YP_004245348.1| - 0.14 12.1 0.3 21 5.0 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.6 gi|325969156|ref|YP_004245348.1| - 0.19 12.0 0.0 10 6.4 0.0 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Fer4_2 PF12797.7 gi|325969156|ref|YP_004245348.1| - 0.75 10.0 12.9 0.048 13.8 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325969156|ref|YP_004245348.1| - 1.4 9.6 10.4 0.14 12.8 2.4 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325969156|ref|YP_004245348.1| - 1.8 9.2 10.9 1.2 9.9 2.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|325969156|ref|YP_004245348.1| - 7.5 7.2 8.8 42 4.8 8.8 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain GCD14 PF08704.10 gi|325969157|ref|YP_004245349.1| - 4e-36 124.9 0.0 1.6e-35 122.9 0.0 1.7 1 1 1 2 2 2 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|325969157|ref|YP_004245349.1| - 1.2e-10 41.4 0.0 1.6e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|325969157|ref|YP_004245349.1| - 1.9e-08 34.3 0.1 3.1e-08 33.6 0.1 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|325969157|ref|YP_004245349.1| - 9e-07 29.5 0.0 1.5e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|325969157|ref|YP_004245349.1| - 2.5e-05 25.2 0.0 4.4e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.6 gi|325969157|ref|YP_004245349.1| - 0.0001 22.1 0.1 0.00019 21.2 0.1 1.5 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_11 PF08241.12 gi|325969157|ref|YP_004245349.1| - 0.00013 22.6 0.0 0.00027 21.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|325969157|ref|YP_004245349.1| - 0.00024 20.7 0.0 0.0014 18.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain AviRa PF11599.8 gi|325969157|ref|YP_004245349.1| - 0.024 14.1 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_32 PF13679.6 gi|325969157|ref|YP_004245349.1| - 0.048 13.6 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|325969157|ref|YP_004245349.1| - 0.1 11.7 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_12 PF08242.12 gi|325969157|ref|YP_004245349.1| - 0.12 13.1 0.0 0.23 12.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|325969157|ref|YP_004245349.1| - 0.17 11.5 0.0 0.31 10.7 0.0 1.4 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 CxxCxxCC PF03692.15 gi|325969158|ref|YP_004245350.1| - 6.1e-10 39.7 0.0 1.2e-09 38.7 0.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Proteasome PF00227.26 gi|325969159|ref|YP_004245351.1| - 2.8e-59 199.8 0.0 4.9e-59 199.0 0.0 1.3 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|325969159|ref|YP_004245351.1| - 8.4e-10 38.2 0.1 8.4e-10 38.2 0.1 2.6 4 0 0 4 4 4 1 Proteasome subunit A N-terminal signature Methyltransf_11 PF08241.12 gi|325969160|ref|YP_004245352.1| - 5.5e-21 75.0 0.0 1.1e-20 74.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325969160|ref|YP_004245352.1| - 5.8e-17 62.2 0.0 9.3e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325969160|ref|YP_004245352.1| - 3e-16 59.6 0.0 4.2e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|325969160|ref|YP_004245352.1| - 8.8e-15 55.3 0.0 1.3e-14 54.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325969160|ref|YP_004245352.1| - 5e-12 46.0 0.0 9.3e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Nitro_FeMo-Co PF02579.17 gi|325969160|ref|YP_004245352.1| - 1.5e-08 34.9 0.0 4.2e-08 33.4 0.0 1.7 2 0 0 2 2 1 1 Dinitrogenase iron-molybdenum cofactor Ubie_methyltran PF01209.18 gi|325969160|ref|YP_004245352.1| - 3.4e-08 33.1 0.0 4.7e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|325969160|ref|YP_004245352.1| - 1.6e-07 31.0 0.0 2.5e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|325969160|ref|YP_004245352.1| - 3.3e-07 30.1 0.0 4.8e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|325969160|ref|YP_004245352.1| - 9.7e-06 25.0 0.0 1.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_8 PF05148.15 gi|325969160|ref|YP_004245352.1| - 5.6e-05 23.1 0.0 0.00016 21.6 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase TPMT PF05724.11 gi|325969160|ref|YP_004245352.1| - 0.0003 20.5 0.0 0.0035 17.0 0.0 2.1 1 1 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PCMT PF01135.19 gi|325969160|ref|YP_004245352.1| - 0.0015 18.3 0.0 0.55 10.0 0.0 2.2 2 0 0 2 2 2 2 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|325969160|ref|YP_004245352.1| - 0.0016 17.5 0.0 0.0023 17.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|325969160|ref|YP_004245352.1| - 0.0035 16.8 0.0 0.0048 16.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MetW PF07021.12 gi|325969160|ref|YP_004245352.1| - 0.0067 16.1 0.0 0.0099 15.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|325969160|ref|YP_004245352.1| - 0.014 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|325969160|ref|YP_004245352.1| - 0.017 16.1 0.0 0.034 15.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|325969160|ref|YP_004245352.1| - 0.029 13.9 0.1 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TehB PF03848.14 gi|325969160|ref|YP_004245352.1| - 0.055 12.9 0.0 0.077 12.4 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Hydrolase_3 PF08282.12 gi|325969162|ref|YP_004245354.1| - 3.2e-25 89.4 0.1 5.9e-17 62.3 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|325969162|ref|YP_004245354.1| - 4.4e-15 55.9 0.0 6.5e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Trehalose_PPase PF02358.16 gi|325969162|ref|YP_004245354.1| - 1.1e-06 28.0 0.0 3.9e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Trehalose-phosphatase Hydrolase PF00702.26 gi|325969162|ref|YP_004245354.1| - 0.00055 20.3 0.6 0.076 13.3 0.6 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|325969162|ref|YP_004245354.1| - 0.0023 18.0 0.1 0.02 15.0 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|325969162|ref|YP_004245354.1| - 0.022 14.8 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like HAD PF12710.7 gi|325969162|ref|YP_004245354.1| - 0.91 9.9 6.4 31 4.9 0.6 3.2 2 2 1 3 3 3 0 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|325969164|ref|YP_004245356.1| - 4.1e-17 63.1 0.0 1.1e-16 61.7 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily DUF1957 PF09210.11 gi|325969164|ref|YP_004245356.1| - 0.054 13.9 0.0 3.3 8.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1957) Pribosyltran PF00156.27 gi|325969165|ref|YP_004245357.1| - 1.4e-20 73.4 0.0 1.7e-20 73.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain LapA_dom PF06305.11 gi|325969166|ref|YP_004245358.1| - 0.034 14.0 0.7 7.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain Band_7 PF01145.25 gi|325969167|ref|YP_004245359.1| - 3.5e-34 118.4 1.8 4.6e-34 118.0 1.8 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|325969167|ref|YP_004245359.1| - 0.00013 21.7 0.2 0.00046 20.0 0.1 2.0 2 1 0 2 2 2 1 SPFH domain-Band 7 family pPIWI_RE_REase PF18154.1 gi|325969167|ref|YP_004245359.1| - 0.0019 18.1 0.9 0.0065 16.4 0.2 2.1 1 1 2 3 3 3 1 REase associating with pPIWI_RE Glyco_hydro_80 PF13647.6 gi|325969167|ref|YP_004245359.1| - 0.089 12.3 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A OppC_N PF12911.7 gi|325969167|ref|YP_004245359.1| - 0.97 9.5 5.0 2.4 8.2 5.0 1.6 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C NfeD PF01957.18 gi|325969168|ref|YP_004245360.1| - 1.4e-10 41.3 1.2 3e-10 40.3 0.4 2.0 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.23 gi|325969168|ref|YP_004245360.1| - 0.00025 21.0 0.0 0.00037 20.4 0.0 1.3 1 0 0 1 1 1 1 Clp protease Aspzincin_M35 PF14521.6 gi|325969168|ref|YP_004245360.1| - 0.038 14.5 0.0 0.068 13.7 0.0 1.4 1 0 0 1 1 1 0 Lysine-specific metallo-endopeptidase DUF2190 PF09956.9 gi|325969168|ref|YP_004245360.1| - 0.068 13.7 0.5 0.2 12.1 0.2 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) SDH_sah PF01972.16 gi|325969168|ref|YP_004245360.1| - 0.099 11.6 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Serine dehydrogenase proteinase DUF1614 PF07758.11 gi|325969169|ref|YP_004245361.1| - 1.1e-37 129.6 18.3 1.1e-37 129.6 18.3 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF3754 PF12576.8 gi|325969169|ref|YP_004245361.1| - 0.23 11.4 1.9 0.63 10.0 1.9 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3754) HAD_2 PF13419.6 gi|325969170|ref|YP_004245362.1| - 8.1e-40 136.8 0.0 9.6e-40 136.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|325969170|ref|YP_004245362.1| - 5.9e-21 75.7 0.6 5.3e-20 72.6 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|325969170|ref|YP_004245362.1| - 5.5e-09 36.7 0.1 1.2e-08 35.6 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|325969170|ref|YP_004245362.1| - 4.2e-06 26.7 0.0 8.9e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_phosphat_B PF03767.14 gi|325969170|ref|YP_004245362.1| - 1.3e-05 24.9 0.1 0.076 12.6 0.0 2.3 2 0 0 2 2 2 2 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 gi|325969170|ref|YP_004245362.1| - 2.2e-05 24.5 0.0 0.001 19.1 0.1 2.8 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|325969170|ref|YP_004245362.1| - 5.3e-05 23.0 0.0 0.0005 19.9 0.0 2.0 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.12 gi|325969170|ref|YP_004245362.1| - 0.00044 20.1 1.2 0.47 10.2 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase PHP_C PF13263.6 gi|325969172|ref|YP_004245364.1| - 2.3e-13 49.7 0.0 4e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|325969172|ref|YP_004245364.1| - 1.1e-06 29.1 0.0 1.7e-06 28.4 0.0 1.5 1 1 0 1 1 1 1 PHP domain AMMECR1 PF01871.17 gi|325969173|ref|YP_004245365.1| - 1e-43 148.8 0.0 1.2e-43 148.6 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Cytochrom_B561 PF03188.16 gi|325969174|ref|YP_004245366.1| - 0.0048 17.0 0.6 0.006 16.7 0.6 1.1 1 0 0 1 1 1 1 Eukaryotic cytochrome b561 TssO PF17561.2 gi|325969174|ref|YP_004245366.1| - 0.18 11.9 5.5 0.73 9.9 0.1 2.0 1 1 1 2 2 2 0 Type VI secretion system, TssO SPC25 PF06703.11 gi|325969174|ref|YP_004245366.1| - 0.19 11.5 4.0 0.33 10.7 1.5 1.9 1 1 1 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) ASFV_J13L PF05568.11 gi|325969174|ref|YP_004245366.1| - 0.42 10.3 0.1 0.42 10.3 0.1 2.0 1 1 1 2 2 2 0 African swine fever virus J13L protein DHHC PF01529.20 gi|325969174|ref|YP_004245366.1| - 0.44 10.6 2.7 0.48 10.5 2.7 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Spo7 PF03907.13 gi|325969174|ref|YP_004245366.1| - 0.76 9.2 2.6 0.83 9.1 2.6 1.1 1 0 0 1 1 1 0 Spo7-like protein ATP1G1_PLM_MAT8 PF02038.16 gi|325969174|ref|YP_004245366.1| - 2 7.9 4.0 5.3 6.6 2.3 2.1 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Cob_adeno_trans PF01923.18 gi|325969175|ref|YP_004245367.1| - 3.3e-11 43.6 0.0 9e-11 42.2 0.0 1.6 1 1 0 1 1 1 1 Cobalamin adenosyltransferase Pyr_redox_2 PF07992.14 gi|325969176|ref|YP_004245368.1| - 3.2e-14 52.9 0.0 4.2e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SO_alpha_A3 PF17806.1 gi|325969176|ref|YP_004245368.1| - 2.5e-08 34.1 0.0 5e-06 26.8 0.0 2.6 2 0 0 2 2 2 1 Sarcosine oxidase A3 domain FAD_binding_2 PF00890.24 gi|325969176|ref|YP_004245368.1| - 8.5e-08 31.7 0.7 1.2e-07 31.2 0.7 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|325969176|ref|YP_004245368.1| - 1.6e-07 31.8 2.3 0.00011 22.7 0.7 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|325969176|ref|YP_004245368.1| - 4.9e-07 29.3 0.2 0.014 14.7 1.9 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325969176|ref|YP_004245368.1| - 9.8e-07 28.9 0.5 2.2e-06 27.8 0.5 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|325969176|ref|YP_004245368.1| - 3.1e-06 26.5 0.4 4.7e-06 25.9 0.4 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|325969176|ref|YP_004245368.1| - 2.9e-05 23.5 0.4 4.5e-05 22.8 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|325969176|ref|YP_004245368.1| - 0.0001 21.8 0.1 0.00014 21.4 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|325969176|ref|YP_004245368.1| - 0.00013 21.3 0.9 0.00031 20.1 0.4 1.8 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|325969176|ref|YP_004245368.1| - 0.00027 20.6 1.5 0.00047 19.8 1.5 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|325969176|ref|YP_004245368.1| - 0.0007 19.9 0.5 0.02 15.2 0.5 2.6 1 1 0 1 1 1 1 BFD-like [2Fe-2S] binding domain GIDA PF01134.22 gi|325969176|ref|YP_004245368.1| - 0.0025 16.9 0.1 0.0036 16.4 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|325969176|ref|YP_004245368.1| - 0.0027 16.5 0.2 0.0038 16.0 0.2 1.2 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|325969176|ref|YP_004245368.1| - 0.007 16.8 0.5 2.5 8.6 0.1 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|325969176|ref|YP_004245368.1| - 0.013 14.8 0.6 0.07 12.4 0.2 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|325969176|ref|YP_004245368.1| - 0.016 14.5 0.0 0.028 13.7 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase TrkA_N PF02254.18 gi|325969176|ref|YP_004245368.1| - 0.061 13.6 0.9 0.38 11.0 0.5 2.2 2 0 0 2 2 2 0 TrkA-N domain DAO PF01266.24 gi|325969177|ref|YP_004245369.1| - 8.1e-59 200.0 0.1 9.4e-59 199.8 0.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|325969177|ref|YP_004245369.1| - 1.1e-08 35.1 0.4 2.9e-08 33.8 0.4 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|325969177|ref|YP_004245369.1| - 2.4e-08 33.5 0.4 5.3e-08 32.4 0.4 1.5 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|325969177|ref|YP_004245369.1| - 1.1e-06 28.1 0.9 1.6e-05 24.3 0.5 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|325969177|ref|YP_004245369.1| - 7.6e-05 22.1 1.5 0.0057 15.9 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|325969177|ref|YP_004245369.1| - 0.00011 21.1 0.1 0.0083 14.9 0.1 2.1 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|325969177|ref|YP_004245369.1| - 0.0012 18.0 2.6 0.03 13.4 0.3 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|325969177|ref|YP_004245369.1| - 0.0021 17.4 0.7 0.0033 16.7 0.7 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|325969177|ref|YP_004245369.1| - 0.0023 17.2 0.8 0.0036 16.6 0.8 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325969177|ref|YP_004245369.1| - 0.0053 17.3 3.8 0.019 15.5 1.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|325969177|ref|YP_004245369.1| - 0.0065 16.4 0.1 0.0097 15.8 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|325969177|ref|YP_004245369.1| - 0.015 14.7 0.2 0.025 13.9 0.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase ApbA PF02558.16 gi|325969177|ref|YP_004245369.1| - 0.035 13.8 0.1 0.057 13.1 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.24 gi|325969177|ref|YP_004245369.1| - 0.038 13.3 0.3 0.11 11.8 0.0 1.8 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|325969177|ref|YP_004245369.1| - 0.04 13.5 0.8 0.077 12.6 0.8 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|325969177|ref|YP_004245369.1| - 0.044 13.1 0.2 0.08 12.2 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|325969177|ref|YP_004245369.1| - 0.052 12.6 0.2 0.09 11.8 0.2 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Shikimate_DH PF01488.20 gi|325969177|ref|YP_004245369.1| - 0.24 11.5 0.4 1.9 8.5 0.1 2.1 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase PGF-CTERM PF18204.1 gi|325969177|ref|YP_004245369.1| - 0.39 10.8 3.3 0.86 9.7 3.3 1.6 1 0 0 1 1 1 0 PGF-CTERM motif HSP20 PF00011.21 gi|325969178|ref|YP_004245370.1| - 3.8e-10 39.8 0.0 4.7e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|325969178|ref|YP_004245370.1| - 0.00065 19.2 0.2 0.0028 17.2 0.2 2.1 1 1 0 1 1 1 1 HSP20-like domain found in ArsA MMR_HSR1 PF01926.23 gi|325969178|ref|YP_004245370.1| - 0.017 15.2 0.0 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 50S ribosome-binding GTPase GvpH PF05455.11 gi|325969178|ref|YP_004245370.1| - 0.14 12.3 0.1 0.18 11.8 0.1 1.3 1 0 0 1 1 1 0 GvpH PhoU PF01895.19 gi|325969179|ref|YP_004245371.1| - 2.4e-19 69.6 5.3 1.9e-16 60.3 0.3 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|325969179|ref|YP_004245371.1| - 1.6e-10 40.7 0.1 5.6e-10 38.9 0.1 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|325969179|ref|YP_004245371.1| - 0.068 13.0 0.0 0.19 11.5 0.0 1.7 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 TOBE PF03459.17 gi|325969179|ref|YP_004245371.1| - 0.1 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 TOBE domain MTS PF05175.14 gi|325969180|ref|YP_004245372.1| - 1.1e-08 34.8 0.0 1.7e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|325969180|ref|YP_004245372.1| - 5.3e-06 26.0 0.2 7.8e-06 25.5 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|325969180|ref|YP_004245372.1| - 0.036 13.7 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_16 PF10294.9 gi|325969180|ref|YP_004245372.1| - 0.047 13.4 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 Lysine methyltransferase Cons_hypoth95 PF03602.15 gi|325969180|ref|YP_004245372.1| - 0.051 13.2 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|325969180|ref|YP_004245372.1| - 0.095 13.4 0.0 0.17 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain HTH_5 PF01022.20 gi|325969181|ref|YP_004245373.1| - 6.8e-05 22.7 0.0 0.00015 21.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|325969181|ref|YP_004245373.1| - 0.0027 17.6 0.1 0.006 16.5 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_34 PF13601.6 gi|325969181|ref|YP_004245373.1| - 0.0058 16.8 0.1 0.027 14.6 0.1 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|325969181|ref|YP_004245373.1| - 0.013 15.3 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|325969181|ref|YP_004245373.1| - 0.056 13.2 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|325969181|ref|YP_004245373.1| - 0.15 12.6 0.0 0.26 11.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|325969181|ref|YP_004245373.1| - 0.18 11.9 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Trypan_glycop PF00913.19 gi|325969182|ref|YP_004245374.1| - 0.19 10.9 2.6 0.27 10.5 2.6 1.1 1 0 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) PPL5 PF18168.1 gi|325969182|ref|YP_004245374.1| - 0.21 10.8 2.2 0.29 10.4 2.2 1.2 1 0 0 1 1 1 0 Prim-pol family 5 Ribosomal_S25 PF03297.15 gi|325969183|ref|YP_004245375.1| - 9.6e-20 70.7 1.0 1.2e-19 70.4 1.0 1.1 1 0 0 1 1 1 1 S25 ribosomal protein TBP PF00352.21 gi|325969184|ref|YP_004245376.1| - 3.7e-63 209.5 0.0 4.4e-31 106.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|325969184|ref|YP_004245376.1| - 0.00038 20.5 0.0 0.033 14.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Hjc PF01870.18 gi|325969186|ref|YP_004245378.1| - 1.6e-27 95.3 0.0 2e-27 95.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|325969186|ref|YP_004245378.1| - 0.028 14.9 0.0 0.06 13.8 0.0 1.6 1 1 0 1 1 1 0 Nuclease-related domain UPF0102 PF02021.17 gi|325969186|ref|YP_004245378.1| - 0.05 13.8 0.0 0.094 13.0 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Lactamase_B_2 PF12706.7 gi|325969188|ref|YP_004245380.1| - 3.1e-26 92.1 0.0 4.1e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|325969188|ref|YP_004245380.1| - 7.1e-25 87.8 0.0 9.1e-25 87.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|325969188|ref|YP_004245380.1| - 1.1e-08 35.3 0.5 6.1e-08 32.9 0.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DAO PF01266.24 gi|325969189|ref|YP_004245381.1| - 4.5e-12 46.2 1.0 3.8e-05 23.4 0.0 2.8 1 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|325969189|ref|YP_004245381.1| - 6e-12 45.5 0.0 7.7e-05 22.1 0.0 3.2 3 0 0 3 3 3 2 FAD binding domain FAD_binding_2 PF00890.24 gi|325969189|ref|YP_004245381.1| - 5.7e-11 42.1 0.1 3.4e-05 23.1 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|325969189|ref|YP_004245381.1| - 7.9e-10 38.7 1.1 0.00034 20.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|325969189|ref|YP_004245381.1| - 3.6e-09 36.0 0.1 0.00024 20.1 0.0 2.8 2 1 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.22 gi|325969189|ref|YP_004245381.1| - 6.3e-06 25.5 0.2 9.5e-06 24.9 0.2 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|325969189|ref|YP_004245381.1| - 2.1e-05 23.9 0.8 7.6e-05 22.1 0.8 2.0 2 1 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|325969189|ref|YP_004245381.1| - 3.1e-05 24.1 2.3 4.1e-05 23.7 0.3 2.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|325969189|ref|YP_004245381.1| - 5.5e-05 22.0 0.1 0.00055 18.7 0.1 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|325969189|ref|YP_004245381.1| - 6.2e-05 22.4 0.3 0.00042 19.6 0.1 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|325969189|ref|YP_004245381.1| - 0.00065 18.9 2.4 0.22 10.5 2.1 2.9 2 1 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.16 gi|325969189|ref|YP_004245381.1| - 0.0038 16.9 0.0 0.0059 16.3 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|325969189|ref|YP_004245381.1| - 0.0064 16.4 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|325969189|ref|YP_004245381.1| - 0.011 16.2 0.2 0.31 11.6 0.1 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase IF-2B PF01008.17 gi|325969190|ref|YP_004245382.1| - 6.7e-76 255.2 0.0 8.2e-76 254.9 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF1869 PF08956.10 gi|325969190|ref|YP_004245382.1| - 0.085 12.8 0.2 16 5.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1869) Peptidase_M32 PF02074.15 gi|325969191|ref|YP_004245383.1| - 3.8e-155 517.4 0.0 4.3e-155 517.2 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF1493 PF07377.12 gi|325969191|ref|YP_004245383.1| - 0.031 14.7 0.2 0.45 11.0 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1493) SEP PF08059.13 gi|325969191|ref|YP_004245383.1| - 0.11 13.0 0.0 0.31 11.7 0.0 1.7 1 0 0 1 1 1 0 SEP domain 4HB_MCP_1 PF12729.7 gi|325969191|ref|YP_004245383.1| - 0.17 11.4 0.1 0.35 10.4 0.1 1.4 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Mrr_cat PF04471.12 gi|325969192|ref|YP_004245384.1| - 2.4e-08 34.0 0.2 3.5e-08 33.5 0.2 1.2 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|325969192|ref|YP_004245384.1| - 4.5e-05 23.6 0.2 7.4e-05 22.9 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NucS PF01939.16 gi|325969192|ref|YP_004245384.1| - 5e-05 22.8 0.3 6.8e-05 22.3 0.3 1.2 1 0 0 1 1 1 1 Endonuclease NucS DUF4143 PF13635.6 gi|325969192|ref|YP_004245384.1| - 0.0015 18.7 0.1 0.0028 17.8 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) MTES_1575 PF18741.1 gi|325969192|ref|YP_004245384.1| - 0.038 14.2 0.0 0.069 13.3 0.0 1.5 1 0 0 1 1 1 0 REase_MTES_1575 RNase_PH PF01138.21 gi|325969193|ref|YP_004245385.1| - 2.6e-32 112.1 0.0 3.9e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|325969193|ref|YP_004245385.1| - 2.6e-06 27.3 0.1 1.2e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|325969194|ref|YP_004245386.1| - 7e-36 123.6 0.0 9.7e-36 123.2 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|325969194|ref|YP_004245386.1| - 2.3e-14 53.2 0.0 4.2e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Acetyltransf_1 PF00583.25 gi|325969195|ref|YP_004245387.1| - 8.8e-19 67.9 0.0 1.1e-18 67.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|325969195|ref|YP_004245387.1| - 1.2e-14 54.4 0.0 1.7e-14 54.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|325969195|ref|YP_004245387.1| - 2.1e-14 53.6 0.0 2.8e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|325969195|ref|YP_004245387.1| - 8.4e-11 42.2 0.0 1e-10 42.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|325969195|ref|YP_004245387.1| - 1.1e-09 38.5 0.1 1.9e-09 37.7 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|325969195|ref|YP_004245387.1| - 1.7e-08 34.3 0.0 2.6e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|325969195|ref|YP_004245387.1| - 2.6e-05 24.9 0.0 3.5e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|325969195|ref|YP_004245387.1| - 0.00083 18.9 0.2 0.0036 16.8 0.2 1.7 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_16 PF05301.11 gi|325969195|ref|YP_004245387.1| - 0.0029 17.4 0.0 0.0046 16.7 0.0 1.5 1 1 0 1 1 1 1 GNAT acetyltransferase, Mec-17 Acetyltransf_CG PF14542.6 gi|325969195|ref|YP_004245387.1| - 0.0045 17.1 0.0 0.0072 16.4 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|325969195|ref|YP_004245387.1| - 0.0057 16.3 0.0 0.0082 15.7 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_8 PF13523.6 gi|325969195|ref|YP_004245387.1| - 0.01 15.5 0.0 0.014 15.1 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GTP_cyclohydro2 PF00925.20 gi|325969195|ref|YP_004245387.1| - 0.029 14.0 0.0 0.038 13.6 0.0 1.4 1 1 0 1 1 1 0 GTP cyclohydrolase II AstA PF04958.12 gi|325969195|ref|YP_004245387.1| - 0.09 11.3 0.2 2 6.9 0.0 2.1 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit MOZ_SAS PF01853.18 gi|325969195|ref|YP_004245387.1| - 0.11 12.1 0.0 0.19 11.4 0.0 1.3 1 1 0 1 1 1 0 MOZ/SAS family Ish1 PF10281.9 gi|325969196|ref|YP_004245388.1| - 0.24 11.7 0.3 0.57 10.5 0.1 1.7 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein Glyco_tranf_2_3 PF13641.6 gi|325969197|ref|YP_004245389.1| - 1.8e-23 83.6 0.0 2.4e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|325969197|ref|YP_004245389.1| - 8.3e-18 64.8 0.0 1.4e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|325969197|ref|YP_004245389.1| - 2e-16 60.5 2.8 3e-16 59.9 2.8 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|325969197|ref|YP_004245389.1| - 3.1e-05 23.5 0.0 5.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|325969197|ref|YP_004245389.1| - 0.0052 15.5 0.1 0.0052 15.5 0.1 2.1 2 0 0 2 2 2 1 Chitin synthase UvrA_inter PF17760.1 gi|325969197|ref|YP_004245389.1| - 0.12 12.4 0.1 0.45 10.6 0.1 1.9 1 1 0 1 1 1 0 UvrA interaction domain Mg_trans_NIPA PF05653.14 gi|325969197|ref|YP_004245389.1| - 0.52 9.4 12.7 0.61 9.2 10.3 2.0 2 0 0 2 2 2 0 Magnesium transporter NIPA DUF983 PF06170.12 gi|325969197|ref|YP_004245389.1| - 1.3 9.5 8.3 4.1 7.9 8.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF983) AAA_21 PF13304.6 gi|325969198|ref|YP_004245390.1| - 1e-11 45.2 0.0 5.1e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|325969198|ref|YP_004245390.1| - 2.7e-10 40.5 0.0 1.3e-07 31.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|325969198|ref|YP_004245390.1| - 3.3e-08 34.3 0.0 4.3e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|325969198|ref|YP_004245390.1| - 1.2e-06 28.1 0.1 1.1e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|325969198|ref|YP_004245390.1| - 2e-06 27.5 0.0 4.2e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|325969198|ref|YP_004245390.1| - 0.00039 20.7 0.0 0.043 14.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF2813 PF11398.8 gi|325969198|ref|YP_004245390.1| - 0.00063 19.1 0.7 0.0012 18.2 0.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2813) ABC_tran PF00005.27 gi|325969198|ref|YP_004245390.1| - 0.001 19.6 0.0 0.0018 18.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|325969198|ref|YP_004245390.1| - 0.0059 17.0 0.0 0.011 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|325969198|ref|YP_004245390.1| - 0.0073 16.2 0.3 0.028 14.3 0.1 1.9 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|325969198|ref|YP_004245390.1| - 0.01 15.6 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|325969198|ref|YP_004245390.1| - 0.019 14.6 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.14 gi|325969198|ref|YP_004245390.1| - 0.026 14.5 0.0 0.072 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.20 gi|325969198|ref|YP_004245390.1| - 0.036 14.0 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.14 gi|325969198|ref|YP_004245390.1| - 0.038 13.9 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.18 gi|325969198|ref|YP_004245390.1| - 0.043 13.2 0.1 0.082 12.2 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family RsgA_GTPase PF03193.16 gi|325969198|ref|YP_004245390.1| - 0.054 13.4 0.2 0.16 11.8 0.1 1.7 2 0 0 2 2 2 0 RsgA GTPase DUF3987 PF13148.6 gi|325969198|ref|YP_004245390.1| - 0.091 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) TrwB_AAD_bind PF10412.9 gi|325969198|ref|YP_004245390.1| - 0.12 11.2 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|325969198|ref|YP_004245390.1| - 0.14 12.7 0.0 0.31 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|325969198|ref|YP_004245390.1| - 0.19 12.0 0.0 0.41 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain T4SS PF07996.11 gi|325969199|ref|YP_004245391.1| - 0.098 13.1 0.0 0.1 13.0 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion system proteins HIT PF01230.23 gi|325969200|ref|YP_004245392.1| - 4.3e-11 43.4 0.1 8.4e-11 42.5 0.0 1.5 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|325969200|ref|YP_004245392.1| - 2.1e-08 34.6 0.0 3.4e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|325969200|ref|YP_004245392.1| - 1.3e-07 31.6 2.4 4.6e-07 29.7 2.4 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 UvrD_C PF13361.6 gi|325969201|ref|YP_004245393.1| - 0.053 12.9 0.1 0.074 12.4 0.1 1.2 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain Hist_deacetyl PF00850.19 gi|325969202|ref|YP_004245394.1| - 3.5e-72 243.5 0.0 4.8e-72 243.0 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain Zn_Tnp_IS1595 PF12760.7 gi|325969203|ref|YP_004245395.1| - 9.2e-05 22.3 0.3 0.068 13.2 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|325969203|ref|YP_004245395.1| - 0.00037 20.1 4.0 0.00085 18.9 4.0 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|325969203|ref|YP_004245395.1| - 0.0028 17.7 0.3 0.0047 17.0 0.3 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|325969203|ref|YP_004245395.1| - 0.0051 16.8 0.1 0.0066 16.4 0.1 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|325969203|ref|YP_004245395.1| - 0.011 15.8 0.2 0.018 15.1 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2 PF00096.26 gi|325969203|ref|YP_004245395.1| - 0.025 15.0 1.1 4.4 8.0 0.0 2.3 2 1 0 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.6 gi|325969203|ref|YP_004245395.1| - 0.033 13.6 2.0 0.071 12.5 0.7 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|325969203|ref|YP_004245395.1| - 0.043 14.1 0.3 0.064 13.5 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbon HypA PF01155.19 gi|325969203|ref|YP_004245395.1| - 0.064 13.3 0.1 0.069 13.2 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1451 PF07295.11 gi|325969203|ref|YP_004245395.1| - 0.074 13.1 0.3 0.092 12.8 0.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf_UBZ PF18439.1 gi|325969203|ref|YP_004245395.1| - 0.093 12.3 0.5 0.7 9.5 0.0 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2_4 PF13894.6 gi|325969203|ref|YP_004245395.1| - 0.18 12.7 2.0 7.4 7.7 0.0 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Ribosomal_L37e PF01907.19 gi|325969203|ref|YP_004245395.1| - 0.24 11.6 2.1 1 9.5 2.1 1.8 1 1 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.6 gi|325969203|ref|YP_004245395.1| - 0.31 10.8 3.2 0.78 9.5 0.6 2.1 2 0 0 2 2 2 0 zinc-ribbon domain CTP_transf_like PF01467.26 gi|325969204|ref|YP_004245396.1| - 1.3e-12 48.1 0.0 2.2e-12 47.4 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|325969204|ref|YP_004245396.1| - 0.00023 20.7 0.0 0.17 11.4 0.1 2.2 2 1 0 2 2 2 2 ATP-sulfurylase FAD_syn PF06574.12 gi|325969204|ref|YP_004245396.1| - 0.21 11.5 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 FAD synthetase 4HBT PF03061.22 gi|325969205|ref|YP_004245397.1| - 5.1e-30 103.6 2.0 4.8e-14 52.5 0.3 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.6 gi|325969205|ref|YP_004245397.1| - 0.0022 18.5 0.0 0.0088 16.5 0.0 1.9 2 0 0 2 2 2 1 Thioesterase-like superfamily SBDS PF01172.18 gi|325969206|ref|YP_004245398.1| - 3.7e-22 78.2 0.0 5.7e-22 77.6 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|325969206|ref|YP_004245398.1| - 1.6e-16 60.4 0.3 2.4e-16 59.8 0.3 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|325969206|ref|YP_004245398.1| - 0.01 15.9 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G C-terminus DUF1949 PF09186.11 gi|325969206|ref|YP_004245398.1| - 0.019 14.8 0.2 0.082 12.8 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1949) KorB PF08535.10 gi|325969206|ref|YP_004245398.1| - 0.11 12.5 0.1 0.29 11.2 0.1 1.7 1 0 0 1 1 1 0 KorB domain ABC2_membrane PF01061.24 gi|325969207|ref|YP_004245399.1| - 0.02 14.3 30.4 0.014 14.8 29.0 1.4 1 1 0 1 1 1 0 ABC-2 type transporter YbjM PF11045.8 gi|325969207|ref|YP_004245399.1| - 0.52 10.5 17.8 0.32 11.2 0.5 3.0 2 1 1 3 3 3 0 Putative inner membrane protein of Enterobacteriaceae ABC_tran PF00005.27 gi|325969208|ref|YP_004245400.1| - 8.2e-27 94.4 0.0 1.6e-26 93.5 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|325969208|ref|YP_004245400.1| - 1.6e-14 54.4 0.0 4.4e-08 33.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|325969208|ref|YP_004245400.1| - 0.0021 17.8 0.0 1.7 8.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|325969208|ref|YP_004245400.1| - 0.0026 18.3 0.0 0.0041 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|325969208|ref|YP_004245400.1| - 0.0033 17.8 0.1 0.024 15.0 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|325969208|ref|YP_004245400.1| - 0.0037 17.0 0.0 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|325969208|ref|YP_004245400.1| - 0.0067 15.9 0.0 2.9 7.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|325969208|ref|YP_004245400.1| - 0.012 15.2 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|325969208|ref|YP_004245400.1| - 0.013 15.8 0.0 0.021 15.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|325969208|ref|YP_004245400.1| - 0.029 14.7 0.0 0.057 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|325969208|ref|YP_004245400.1| - 0.033 14.4 0.0 0.11 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|325969208|ref|YP_004245400.1| - 0.075 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RsgA_GTPase PF03193.16 gi|325969208|ref|YP_004245400.1| - 0.083 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|325969208|ref|YP_004245400.1| - 0.083 11.5 0.0 0.98 8.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|325969208|ref|YP_004245400.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|325969208|ref|YP_004245400.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 2 0 0 2 2 2 0 Adenylylsulphate kinase Rad17 PF03215.15 gi|325969208|ref|YP_004245400.1| - 0.24 11.3 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain S4 PF01479.25 gi|325969209|ref|YP_004245401.1| - 5.3e-17 61.3 0.2 1.2e-16 60.2 0.2 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|325969209|ref|YP_004245401.1| - 0.0035 18.2 0.6 0.0055 17.6 0.5 1.4 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain RmuC PF02646.16 gi|325969210|ref|YP_004245402.1| - 0.0021 17.2 0.7 0.0034 16.5 0.2 1.7 2 0 0 2 2 2 1 RmuC family Vac_Fusion PF02346.16 gi|325969210|ref|YP_004245402.1| - 0.0029 17.2 2.1 0.014 15.0 1.6 2.5 2 1 0 2 2 2 1 Chordopoxvirus multifunctional envelope protein A27 DUF3552 PF12072.8 gi|325969210|ref|YP_004245402.1| - 0.0032 16.9 2.4 0.0032 16.9 2.4 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF3552) TMPIT PF07851.13 gi|325969210|ref|YP_004245402.1| - 0.0048 16.2 0.3 0.0085 15.4 0.3 1.4 1 0 0 1 1 1 1 TMPIT-like protein KxDL PF10241.9 gi|325969210|ref|YP_004245402.1| - 0.0054 17.0 0.5 0.016 15.5 0.5 1.8 1 0 0 1 1 1 1 Uncharacterized conserved protein YkyA PF10368.9 gi|325969210|ref|YP_004245402.1| - 0.0066 16.1 4.2 0.0066 16.1 4.2 2.1 1 1 1 2 2 2 1 Putative cell-wall binding lipoprotein DUF4795 PF16043.5 gi|325969210|ref|YP_004245402.1| - 0.0069 16.0 1.5 0.0069 16.0 1.5 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4795) FAM92 PF06730.11 gi|325969210|ref|YP_004245402.1| - 0.0081 15.6 1.2 0.0081 15.6 1.2 1.6 1 1 0 2 2 2 1 FAM92 protein CLZ PF16526.5 gi|325969210|ref|YP_004245402.1| - 0.012 15.9 4.9 0.048 14.0 1.0 3.0 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3029 PF11230.8 gi|325969210|ref|YP_004245402.1| - 0.02 13.3 0.1 0.023 13.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3029) Exonuc_VII_L PF02601.15 gi|325969210|ref|YP_004245402.1| - 0.023 14.3 2.3 0.02 14.5 1.2 1.3 1 1 0 1 1 1 0 Exonuclease VII, large subunit Occludin_ELL PF07303.13 gi|325969210|ref|YP_004245402.1| - 0.038 14.7 6.1 0.039 14.7 3.0 2.5 1 1 1 2 2 2 0 Occludin homology domain DUF1664 PF07889.12 gi|325969210|ref|YP_004245402.1| - 0.052 13.6 1.1 0.19 11.8 0.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Phage_GPO PF05929.11 gi|325969210|ref|YP_004245402.1| - 0.055 13.1 0.3 0.13 11.8 0.0 1.7 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase FapA PF03961.13 gi|325969210|ref|YP_004245402.1| - 0.085 11.5 1.3 0.098 11.2 0.6 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A TRPM_tetra PF16519.5 gi|325969210|ref|YP_004245402.1| - 0.12 12.5 2.3 0.3 11.2 2.3 1.8 1 0 0 1 1 1 0 Tetramerisation domain of TRPM ABATE PF07336.11 gi|325969210|ref|YP_004245402.1| - 0.3 11.7 1.4 1.3 9.7 1.4 2.0 1 1 0 1 1 1 0 Putative stress-induced transcription regulator FlaC_arch PF05377.11 gi|325969210|ref|YP_004245402.1| - 0.46 10.9 2.9 0.57 10.6 0.3 2.3 2 1 2 4 4 3 0 Flagella accessory protein C (FlaC) V_ATPase_I PF01496.19 gi|325969210|ref|YP_004245402.1| - 0.76 7.6 5.1 1 7.2 5.1 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Tsc35 PF15079.6 gi|325969210|ref|YP_004245402.1| - 1.2 8.6 12.5 4.4 6.8 0.2 2.2 2 0 0 2 2 2 0 Testis-specific protein 35 gag-asp_proteas PF13975.6 gi|325969211|ref|YP_004245403.1| - 6e-09 36.3 0.1 9.3e-09 35.7 0.1 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|325969211|ref|YP_004245403.1| - 1.5e-07 32.0 0.1 1.2e-06 29.1 0.1 2.0 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.20 gi|325969211|ref|YP_004245403.1| - 0.011 16.0 0.2 0.04 14.2 0.2 1.8 1 1 0 1 1 1 0 Retroviral aspartyl protease Polbeta PF18765.1 gi|325969212|ref|YP_004245404.1| - 3.2e-10 40.0 0.1 3.8e-10 39.7 0.1 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|325969212|ref|YP_004245404.1| - 2.2e-07 31.0 0.1 2.7e-07 30.8 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.9 gi|325969212|ref|YP_004245404.1| - 0.0016 18.3 0.0 0.0021 17.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG DUF2007 PF09413.10 gi|325969212|ref|YP_004245404.1| - 0.041 14.1 0.0 0.085 13.0 0.0 1.7 1 1 0 1 1 1 0 Putative prokaryotic signal transducing protein HEPN PF05168.14 gi|325969213|ref|YP_004245405.1| - 0.00089 19.4 0.0 0.00089 19.4 0.0 1.0 1 0 0 1 1 1 1 HEPN domain gag-asp_proteas PF13975.6 gi|325969214|ref|YP_004245406.1| - 8.1e-10 39.1 0.3 1.1e-09 38.7 0.3 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|325969214|ref|YP_004245406.1| - 2.9e-09 37.4 0.4 4.6e-09 36.8 0.4 1.4 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.20 gi|325969214|ref|YP_004245406.1| - 0.0018 18.5 0.0 0.0027 18.0 0.0 1.4 1 1 0 1 1 1 1 Retroviral aspartyl protease Asp_protease PF09668.10 gi|325969214|ref|YP_004245406.1| - 0.066 13.0 0.1 0.1 12.4 0.1 1.4 1 1 0 1 1 1 0 Aspartyl protease DUF2505 PF10698.9 gi|325969214|ref|YP_004245406.1| - 0.12 12.5 1.9 0.17 12.0 0.8 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2505) AAA_16 PF13191.6 gi|325969215|ref|YP_004245407.1| - 2.3e-05 24.9 0.0 3.2e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|325969215|ref|YP_004245407.1| - 0.0004 20.4 0.0 0.00052 20.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|325969215|ref|YP_004245407.1| - 0.0016 18.4 0.1 0.0017 18.3 0.1 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|325969215|ref|YP_004245407.1| - 0.011 14.9 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA PF00004.29 gi|325969215|ref|YP_004245407.1| - 0.035 14.5 0.0 0.048 14.1 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|325969215|ref|YP_004245407.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain PolyA_pol_RNAbd PF12627.7 gi|325969215|ref|YP_004245407.1| - 0.15 11.8 0.0 0.62 9.9 0.0 1.9 2 0 0 2 2 2 0 Probable RNA and SrmB- binding site of polymerase A DUF3391 PF11871.8 gi|325969215|ref|YP_004245407.1| - 0.18 12.3 0.0 0.26 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) OrfB_IS605 PF01385.19 gi|325969216|ref|YP_004245408.1| - 6.5e-36 123.2 0.1 1.3e-35 122.3 0.1 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|325969216|ref|YP_004245408.1| - 5.1e-19 68.0 0.0 1.3e-18 66.7 0.0 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF3782 PF12644.7 gi|325969220|ref|YP_004245412.1| - 5.3e-25 87.4 1.9 5.3e-25 87.4 1.9 3.0 2 1 0 2 2 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|325969220|ref|YP_004245412.1| - 1.7e-20 72.7 2.3 5e-20 71.2 2.3 1.8 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Sec34 PF04136.15 gi|325969220|ref|YP_004245412.1| - 2.2e-05 24.4 0.1 0.016 15.1 0.0 3.3 1 1 2 3 3 3 1 Sec34-like family EzrA PF06160.12 gi|325969220|ref|YP_004245412.1| - 0.00065 18.0 3.2 0.27 9.4 0.5 2.2 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA DUF948 PF06103.11 gi|325969220|ref|YP_004245412.1| - 0.00085 19.5 4.5 0.025 14.8 2.2 2.6 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) APG6_N PF17675.1 gi|325969220|ref|YP_004245412.1| - 0.0018 18.8 13.6 0.002 18.7 5.5 2.6 1 1 1 2 2 2 1 Apg6 coiled-coil region Uds1 PF15456.6 gi|325969220|ref|YP_004245412.1| - 0.0034 17.5 1.2 0.5 10.5 0.0 2.7 2 1 0 2 2 2 1 Up-regulated During Septation HapK PF11639.8 gi|325969220|ref|YP_004245412.1| - 0.012 16.1 0.2 0.082 13.4 0.0 2.2 2 0 0 2 2 2 0 REDY-like protein HapK Dor1 PF04124.12 gi|325969220|ref|YP_004245412.1| - 0.013 14.3 2.8 1.4 7.5 0.1 2.6 1 1 1 2 2 2 0 Dor1-like family Mod_r PF07200.13 gi|325969220|ref|YP_004245412.1| - 0.016 15.3 9.4 2.9 8.0 2.7 3.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Baculo_PEP_C PF04513.12 gi|325969220|ref|YP_004245412.1| - 0.019 15.0 5.7 0.29 11.2 3.9 2.8 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|325969220|ref|YP_004245412.1| - 0.02 15.0 7.8 0.58 10.2 0.9 3.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1664) IncF PF17626.2 gi|325969220|ref|YP_004245412.1| - 0.022 15.1 0.0 0.047 14.0 0.0 1.6 1 0 0 1 1 1 0 Inclusion membrane protein F Cluap1 PF10234.9 gi|325969220|ref|YP_004245412.1| - 0.024 14.0 10.0 0.57 9.5 1.8 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 EMP24_GP25L PF01105.24 gi|325969220|ref|YP_004245412.1| - 0.025 14.5 0.5 0.025 14.5 0.5 2.7 1 1 1 3 3 3 0 emp24/gp25L/p24 family/GOLD Syntaxin_2 PF14523.6 gi|325969220|ref|YP_004245412.1| - 0.032 14.6 3.6 0.15 12.5 0.8 2.7 2 1 1 3 3 3 0 Syntaxin-like protein ApoLp-III PF07464.11 gi|325969220|ref|YP_004245412.1| - 0.034 14.2 4.3 0.7 10.0 1.6 2.5 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) BAR_3 PF16746.5 gi|325969220|ref|YP_004245412.1| - 0.035 13.8 2.1 0.19 11.4 0.7 2.3 1 1 0 2 2 2 0 BAR domain of APPL family DUF16 PF01519.16 gi|325969220|ref|YP_004245412.1| - 0.038 14.5 11.2 0.24 11.9 0.8 3.3 1 1 2 3 3 3 0 Protein of unknown function DUF16 DASH_Duo1 PF08651.10 gi|325969220|ref|YP_004245412.1| - 0.04 13.7 3.2 0.6 9.9 0.3 2.7 1 1 1 2 2 2 0 DASH complex subunit Duo1 Fib_alpha PF08702.10 gi|325969220|ref|YP_004245412.1| - 0.073 13.2 4.1 0.18 12.0 1.2 2.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family WXG100 PF06013.12 gi|325969220|ref|YP_004245412.1| - 0.08 13.2 3.9 2 8.7 0.0 3.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF2312 PF10073.9 gi|325969220|ref|YP_004245412.1| - 0.096 12.3 6.3 5.3 6.8 0.6 3.7 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2312) TFA2_Winged_2 PF18121.1 gi|325969220|ref|YP_004245412.1| - 0.1 12.3 2.0 0.22 11.2 0.1 2.5 2 1 0 2 2 2 0 TFA2 Winged helix domain 2 IMD PF08397.11 gi|325969220|ref|YP_004245412.1| - 0.11 11.8 4.9 0.094 12.1 1.4 2.1 1 1 1 2 2 2 0 IRSp53/MIM homology domain V_ATPase_I PF01496.19 gi|325969220|ref|YP_004245412.1| - 0.13 10.1 3.6 1.1 7.1 0.6 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family UPF0449 PF15136.6 gi|325969220|ref|YP_004245412.1| - 0.16 12.4 3.8 2 8.9 0.7 2.8 2 1 0 2 2 2 0 Uncharacterised protein family UPF0449 Snapin_Pallidin PF14712.6 gi|325969220|ref|YP_004245412.1| - 0.22 12.0 10.5 21 5.6 0.1 4.2 2 2 2 4 4 4 0 Snapin/Pallidin NPV_P10 PF05531.12 gi|325969220|ref|YP_004245412.1| - 0.26 11.8 1.8 2.8 8.5 1.2 2.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF5344 PF17279.2 gi|325969220|ref|YP_004245412.1| - 0.29 11.8 3.1 3.6 8.2 0.3 3.2 2 1 1 3 3 3 0 Family of unknown function (DUF5344) Spc7 PF08317.11 gi|325969220|ref|YP_004245412.1| - 0.33 9.8 7.7 0.39 9.5 5.2 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein CDC73_N PF16050.5 gi|325969220|ref|YP_004245412.1| - 0.34 10.2 3.3 3.8 6.7 0.0 2.4 2 1 0 2 2 2 0 Paf1 complex subunit CDC73 N-terminal Tweety PF04906.13 gi|325969220|ref|YP_004245412.1| - 0.39 9.3 3.1 0.68 8.5 2.1 1.9 1 1 1 2 2 2 0 Tweety Exonuc_VII_L PF02601.15 gi|325969220|ref|YP_004245412.1| - 0.43 10.1 3.9 0.96 9.0 3.9 1.6 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF4795 PF16043.5 gi|325969220|ref|YP_004245412.1| - 0.45 10.1 7.9 11 5.6 0.1 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Prominin PF05478.11 gi|325969220|ref|YP_004245412.1| - 0.66 7.9 6.3 2.5 6.0 1.1 2.1 1 1 1 2 2 2 0 Prominin BLOC1_2 PF10046.9 gi|325969220|ref|YP_004245412.1| - 0.71 10.2 6.2 11 6.4 1.8 3.1 2 2 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.11 gi|325969220|ref|YP_004245412.1| - 0.94 9.6 8.5 7.9 6.6 0.6 3.0 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4164 PF13747.6 gi|325969220|ref|YP_004245412.1| - 1.4 9.3 15.7 9.7 6.5 3.0 3.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4164) MCPsignal PF00015.21 gi|325969220|ref|YP_004245412.1| - 1.5 8.6 6.5 1.2 8.9 4.0 2.0 2 0 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain YabA PF06156.13 gi|325969220|ref|YP_004245412.1| - 1.9 9.2 9.5 1.5 9.5 1.0 3.0 1 1 1 3 3 3 0 Initiation control protein YabA DUF812 PF05667.11 gi|325969220|ref|YP_004245412.1| - 2.2 7.0 9.5 3.7 6.3 9.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF2205 PF10224.9 gi|325969220|ref|YP_004245412.1| - 2.7 8.1 9.4 1.2 9.1 1.5 3.4 2 1 1 4 4 4 0 Short coiled-coil protein DegS PF05384.11 gi|325969220|ref|YP_004245412.1| - 2.9 7.4 10.1 3.4 7.1 0.4 2.8 1 1 1 2 2 2 0 Sensor protein DegS DUF724 PF05266.14 gi|325969220|ref|YP_004245412.1| - 5.5 6.8 6.5 19 5.0 1.5 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF724) GAS PF13851.6 gi|325969220|ref|YP_004245412.1| - 8.2 5.7 9.6 12 5.2 1.0 2.5 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding DUF86 PF01934.17 gi|325969221|ref|YP_004245413.1| - 9.7e-14 51.3 0.1 2.3e-13 50.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|325969221|ref|YP_004245413.1| - 1.2e-12 47.7 0.1 2.4e-12 46.8 0.1 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|325969221|ref|YP_004245413.1| - 0.075 13.3 0.1 0.17 12.2 0.1 1.7 1 1 0 1 1 1 0 Nucleotidyltransferase domain PaREP1 PF05942.11 gi|325969222|ref|YP_004245414.1| - 3.4e-09 36.6 0.0 4.6e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PaREP1 PF05942.11 gi|325969224|ref|YP_004245416.1| - 2.1e-36 124.3 2.1 3.2e-36 123.7 2.1 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|325969224|ref|YP_004245416.1| - 0.0017 18.5 0.5 0.0032 17.6 0.5 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5618) DUF357 PF04010.13 gi|325969224|ref|YP_004245416.1| - 0.045 13.8 0.6 0.15 12.2 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF357) RGS PF00615.19 gi|325969224|ref|YP_004245416.1| - 0.088 13.1 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Regulator of G protein signaling domain HEPN PF05168.14 gi|325969224|ref|YP_004245416.1| - 0.14 12.3 3.9 0.23 11.6 3.9 1.7 1 1 0 1 1 1 0 HEPN domain Peptidase_S29 PF02907.15 gi|325969224|ref|YP_004245416.1| - 0.15 11.8 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease PaREP1 PF05942.11 gi|325969225|ref|YP_004245417.1| - 3.1e-27 94.8 0.0 3.7e-27 94.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Glycos_transf_1 PF00534.20 gi|325969226|ref|YP_004245418.1| - 6.4e-17 61.6 0.0 8.3e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325969226|ref|YP_004245418.1| - 2e-08 34.7 0.0 2.8e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|325969226|ref|YP_004245418.1| - 0.00073 19.9 0.0 0.0014 19.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|325969231|ref|YP_004245423.1| - 0.0002 21.4 0.1 0.25 11.4 0.0 2.2 1 1 1 2 2 2 2 Methyltransferase FkbM domain Methyltransf_9 PF08003.11 gi|325969231|ref|YP_004245423.1| - 0.019 13.9 0.0 0.026 13.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_23 PF13489.6 gi|325969231|ref|YP_004245423.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_1 PF00534.20 gi|325969232|ref|YP_004245424.1| - 1.9e-25 89.4 0.0 3.7e-25 88.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|325969232|ref|YP_004245424.1| - 2.8e-20 73.1 0.2 5e-20 72.3 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325969232|ref|YP_004245424.1| - 5.2e-05 23.3 0.2 5.2e-05 23.3 0.2 2.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|325969232|ref|YP_004245424.1| - 0.00032 21.0 0.0 0.00067 20.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Papo_T_antigen PF02380.15 gi|325969232|ref|YP_004245424.1| - 0.0032 17.6 0.1 0.0059 16.7 0.1 1.3 1 0 0 1 1 1 1 T-antigen specific domain eRF1_2 PF03464.15 gi|325969232|ref|YP_004245424.1| - 0.032 14.5 0.0 4 7.8 0.0 2.2 2 0 0 2 2 2 0 eRF1 domain 2 Epimerase_2 PF02350.19 gi|325969232|ref|YP_004245424.1| - 0.11 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase PaREP1 PF05942.11 gi|325969233|ref|YP_004245425.1| - 6.7e-35 119.5 1.0 9.4e-35 119.0 1.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|325969233|ref|YP_004245425.1| - 0.0049 16.9 0.6 0.012 15.6 0.2 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF357) FliS PF02561.14 gi|325969233|ref|YP_004245425.1| - 0.075 13.3 0.1 0.13 12.6 0.1 1.3 1 0 0 1 1 1 0 Flagellar protein FliS APG6_N PF17675.1 gi|325969234|ref|YP_004245426.1| - 0.001 19.6 2.6 0.0016 19.0 2.6 1.3 1 0 0 1 1 1 1 Apg6 coiled-coil region COG2 PF06148.11 gi|325969234|ref|YP_004245426.1| - 0.0091 16.1 3.8 2.4 8.3 1.5 2.9 2 1 1 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 Atg14 PF10186.9 gi|325969234|ref|YP_004245426.1| - 0.0097 15.0 0.4 0.012 14.7 0.4 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 PTRF_SDPR PF15237.6 gi|325969234|ref|YP_004245426.1| - 0.017 14.8 2.7 0.033 13.8 2.7 1.5 1 0 0 1 1 1 0 PTRF/SDPR family Hemerythrin PF01814.23 gi|325969234|ref|YP_004245426.1| - 0.017 15.7 0.8 0.09 13.4 0.6 2.2 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain Mod_r PF07200.13 gi|325969234|ref|YP_004245426.1| - 0.058 13.5 3.9 0.12 12.5 3.9 1.4 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein PDDEXK_10 PF07788.11 gi|325969234|ref|YP_004245426.1| - 0.066 13.2 1.0 0.18 11.7 1.0 1.8 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily GlnE PF03710.15 gi|325969234|ref|YP_004245426.1| - 0.11 11.8 2.9 0.31 10.4 0.2 2.2 1 1 1 2 2 2 0 Glutamate-ammonia ligase adenylyltransferase DUF948 PF06103.11 gi|325969234|ref|YP_004245426.1| - 0.14 12.4 1.9 1.3 9.3 0.6 2.7 2 1 0 3 3 3 0 Bacterial protein of unknown function (DUF948) YabA PF06156.13 gi|325969234|ref|YP_004245426.1| - 0.17 12.6 5.8 0.96 10.1 0.6 2.4 1 1 1 2 2 2 0 Initiation control protein YabA betaPIX_CC PF16523.5 gi|325969234|ref|YP_004245426.1| - 0.27 11.1 7.3 2.9 7.8 0.3 3.0 2 1 1 3 3 3 0 betaPIX coiled coil ZapB PF06005.12 gi|325969234|ref|YP_004245426.1| - 2.3 8.7 11.3 10 6.6 10.2 2.5 1 1 1 2 2 2 0 Cell division protein ZapB NTP_transf_3 PF12804.7 gi|325969235|ref|YP_004245427.1| - 3.5e-16 60.0 0.0 4e-16 59.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|325969235|ref|YP_004245427.1| - 5.3e-07 29.8 0.0 7.5e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase IspD PF01128.19 gi|325969235|ref|YP_004245427.1| - 0.00018 21.3 0.0 0.00041 20.2 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|325969235|ref|YP_004245427.1| - 0.0014 18.2 0.0 0.002 17.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CofC PF01983.16 gi|325969235|ref|YP_004245427.1| - 0.0018 17.5 0.0 0.0026 17.0 0.0 1.3 1 0 0 1 1 1 1 Guanylyl transferase CofC like PucR PF07905.11 gi|325969235|ref|YP_004245427.1| - 0.15 12.3 0.0 0.37 11.1 0.0 1.7 1 1 0 1 1 1 0 Purine catabolism regulatory protein-like family NTP_transf_3 PF12804.7 gi|325969236|ref|YP_004245428.1| - 2.1e-22 80.2 0.0 2.9e-22 79.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.16 gi|325969236|ref|YP_004245428.1| - 0.025 13.8 0.3 0.15 11.3 0.0 2.0 2 0 0 2 2 2 0 Guanylyl transferase CofC like LRRC37AB_C PF14914.6 gi|325969237|ref|YP_004245429.1| - 0.15 12.0 1.8 0.34 10.8 1.8 1.5 1 0 0 1 1 1 0 LRRC37A/B like protein 1 C-terminal domain SPT_ssu-like PF11779.8 gi|325969237|ref|YP_004245429.1| - 1.1 8.9 5.9 9 6.0 0.3 2.4 2 0 0 2 2 2 0 Small subunit of serine palmitoyltransferase-like TMEM154 PF15102.6 gi|325969237|ref|YP_004245429.1| - 1.8 8.5 5.3 4.1 7.3 5.3 1.5 1 0 0 1 1 1 0 TMEM154 protein family Sm_multidrug_ex PF06695.11 gi|325969237|ref|YP_004245429.1| - 2.3 8.9 11.4 0.18 12.4 1.6 2.7 1 1 1 2 2 2 0 Putative small multi-drug export protein Vpu PF00558.19 gi|325969237|ref|YP_004245429.1| - 3.2 7.6 9.3 0.18 11.6 3.8 1.7 2 0 0 2 2 2 0 Vpu protein Sid-5 PF17204.3 gi|325969237|ref|YP_004245429.1| - 5.9 7.1 8.4 9.4 6.5 0.6 2.3 2 0 0 2 2 2 0 Sid-5 family Tad PF13400.6 gi|325969237|ref|YP_004245429.1| - 6.3 7.2 9.2 1 9.8 0.8 2.5 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Chordopox_A13L PF05961.11 gi|325969237|ref|YP_004245429.1| - 10 6.5 7.5 0.82 10.0 1.2 2.3 3 0 0 3 3 3 0 Chordopoxvirus A13L protein Hist_deacetyl PF00850.19 gi|325969238|ref|YP_004245430.1| - 4.6e-85 285.8 0.0 7.9e-85 285.0 0.0 1.3 1 1 0 1 1 1 1 Histone deacetylase domain DUF3073 PF11273.8 gi|325969239|ref|YP_004245431.1| - 0.14 12.9 1.4 0.19 12.5 0.5 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3073) FbpA PF05833.11 gi|325969240|ref|YP_004245432.1| - 3.2e-37 128.4 0.2 4.2e-37 128.0 0.2 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|325969240|ref|YP_004245432.1| - 2.2e-25 89.4 0.0 4e-25 88.6 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain Apolipoprotein PF01442.18 gi|325969240|ref|YP_004245432.1| - 0.0039 17.1 0.2 0.011 15.7 0.2 1.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain NFACT-R_2 PF18297.1 gi|325969240|ref|YP_004245432.1| - 0.019 15.1 0.0 0.05 13.8 0.0 1.7 1 0 0 1 1 1 0 NFACT protein RNA binding domain Prefoldin_2 PF01920.20 gi|325969240|ref|YP_004245432.1| - 0.02 14.9 5.9 0.18 11.8 0.4 2.6 3 0 0 3 3 2 0 Prefoldin subunit DUF2203 PF09969.9 gi|325969240|ref|YP_004245432.1| - 0.051 14.3 0.5 6.9 7.4 0.0 2.6 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) DHR10 PF18595.1 gi|325969240|ref|YP_004245432.1| - 0.058 13.5 6.0 1.3 9.1 0.7 2.3 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Apo-CIII PF05778.12 gi|325969240|ref|YP_004245432.1| - 0.078 12.6 0.1 0.27 10.9 0.1 1.9 1 0 0 1 1 1 0 Apolipoprotein CIII (Apo-CIII) TPR_MLP1_2 PF07926.12 gi|325969240|ref|YP_004245432.1| - 0.1 12.7 1.7 8.9 6.4 0.3 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.9 gi|325969240|ref|YP_004245432.1| - 0.16 12.3 1.9 6.9 7.0 0.2 2.5 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HalX PF08663.10 gi|325969240|ref|YP_004245432.1| - 0.31 11.4 2.8 1.9 8.9 0.3 2.8 3 0 0 3 3 2 0 HalX domain GrpE PF01025.19 gi|325969240|ref|YP_004245432.1| - 0.97 9.1 7.0 1.9 8.1 0.2 2.9 3 0 0 3 3 3 0 GrpE FlaC_arch PF05377.11 gi|325969240|ref|YP_004245432.1| - 0.98 9.9 8.0 3.3 8.2 1.2 2.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) CENP-F_leu_zip PF10473.9 gi|325969240|ref|YP_004245432.1| - 0.99 9.4 6.5 9.9 6.2 0.2 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CENP-H PF05837.12 gi|325969240|ref|YP_004245432.1| - 1 9.8 3.3 5.4 7.5 0.1 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) ZapB PF06005.12 gi|325969240|ref|YP_004245432.1| - 1.1 9.8 6.3 0.39 11.2 0.8 2.4 2 0 0 2 2 2 0 Cell division protein ZapB bZIP_1 PF00170.21 gi|325969240|ref|YP_004245432.1| - 1.2 9.3 5.1 1.2 9.3 1.1 2.4 2 0 0 2 2 2 0 bZIP transcription factor Tup_N PF08581.10 gi|325969240|ref|YP_004245432.1| - 2.2 8.6 7.7 11 6.4 0.8 2.7 3 0 0 3 3 3 0 Tup N-terminal APG6_N PF17675.1 gi|325969240|ref|YP_004245432.1| - 4.8 7.7 7.5 18 5.9 0.4 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region Mut7-C PF01927.16 gi|325969241|ref|YP_004245433.1| - 2.8e-28 98.9 0.0 3.3e-28 98.6 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DNA_ligase_ZBD PF03119.16 gi|325969241|ref|YP_004245433.1| - 0.014 15.4 0.3 0.035 14.1 0.3 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain MqsA_antitoxin PF15731.5 gi|325969241|ref|YP_004245433.1| - 0.034 14.3 0.0 0.051 13.7 0.0 1.2 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA ADK_lid PF05191.14 gi|325969241|ref|YP_004245433.1| - 0.044 13.8 0.3 9 6.4 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.12 gi|325969241|ref|YP_004245433.1| - 0.08 12.5 1.9 0.78 9.3 1.9 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding DUF3268 PF11672.8 gi|325969241|ref|YP_004245433.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|325969241|ref|YP_004245433.1| - 0.14 12.3 0.3 1 9.5 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain AMMECR1 PF01871.17 gi|325969242|ref|YP_004245434.1| - 5.3e-22 78.2 0.0 6.6e-22 77.9 0.0 1.2 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.6 gi|325969243|ref|YP_004245435.1| - 0.00033 20.6 0.5 0.00069 19.6 0.0 1.8 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_4 PF13462.6 gi|325969243|ref|YP_004245435.1| - 0.019 15.1 0.0 0.027 14.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Ribosomal_L35Ae PF01247.18 gi|325969244|ref|YP_004245436.1| - 5.3e-06 26.5 0.0 9.4e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L35Ae V_ATPase_I PF01496.19 gi|325969245|ref|YP_004245437.1| - 1.6e-22 79.3 18.8 1.8e-16 59.3 0.7 4.4 4 1 0 4 4 4 2 V-type ATPase 116kDa subunit family Laminin_I PF06008.14 gi|325969245|ref|YP_004245437.1| - 0.019 14.7 0.0 5.9 6.5 0.0 3.0 3 0 0 3 3 3 0 Laminin Domain I Tup_N PF08581.10 gi|325969245|ref|YP_004245437.1| - 0.019 15.3 1.4 3.9 7.9 0.2 3.7 4 0 0 4 4 4 0 Tup N-terminal CCDC144C PF14915.6 gi|325969245|ref|YP_004245437.1| - 0.029 13.5 0.2 0.97 8.5 0.0 2.1 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region Spectrin_like PF18373.1 gi|325969245|ref|YP_004245437.1| - 0.07 13.2 0.1 2.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Spectrin like domain GAS PF13851.6 gi|325969245|ref|YP_004245437.1| - 0.079 12.3 0.0 1.7 7.9 0.0 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Vac_Fusion PF02346.16 gi|325969245|ref|YP_004245437.1| - 0.099 12.3 0.8 25 4.6 0.1 3.5 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 MnmE_helical PF12631.7 gi|325969245|ref|YP_004245437.1| - 0.14 12.4 0.0 0.34 11.1 0.0 1.6 1 1 0 1 1 1 0 MnmE helical domain DUF4732 PF15876.5 gi|325969245|ref|YP_004245437.1| - 0.15 12.2 0.0 0.34 11.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4732) COG2 PF06148.11 gi|325969245|ref|YP_004245437.1| - 0.17 12.0 0.2 31 4.6 0.0 2.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Lipoprotein_7 PF01540.16 gi|325969245|ref|YP_004245437.1| - 0.17 11.1 1.0 0.67 9.2 0.4 1.9 2 0 0 2 2 2 0 Adhesin lipoprotein Spc24 PF08286.11 gi|325969245|ref|YP_004245437.1| - 0.29 11.4 1.6 7 6.9 0.1 2.8 3 0 0 3 3 2 0 Spc24 subunit of Ndc80 BLOC1_2 PF10046.9 gi|325969245|ref|YP_004245437.1| - 1 9.7 2.5 36 4.7 0.0 3.6 4 0 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HalX PF08663.10 gi|325969245|ref|YP_004245437.1| - 1.4 9.3 5.1 14 6.1 0.4 3.1 3 0 0 3 3 3 0 HalX domain CBS PF00571.28 gi|325969246|ref|YP_004245438.1| - 8e-30 103.1 12.3 6.2e-16 58.6 2.0 2.3 2 0 0 2 2 2 2 CBS domain Acetyltransf_10 PF13673.7 gi|325969246|ref|YP_004245438.1| - 0.0022 17.9 0.1 0.038 13.9 0.1 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF3659 PF12396.8 gi|325969246|ref|YP_004245438.1| - 0.02 14.8 1.2 2.2 8.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Ral PF11058.8 gi|325969246|ref|YP_004245438.1| - 0.064 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Antirestriction protein Ral DUF2283 PF10049.9 gi|325969246|ref|YP_004245438.1| - 0.81 10.0 4.5 12 6.2 0.5 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2283) Lys_export PF03956.13 gi|325969247|ref|YP_004245439.1| - 7.8e-43 146.2 20.3 7.8e-43 146.2 20.3 2.0 2 0 0 2 2 2 2 Lysine exporter LysO NADH-u_ox-rdase PF10785.9 gi|325969247|ref|YP_004245439.1| - 0.58 10.9 5.1 0.6 10.8 0.7 3.1 2 1 1 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Rad51 PF08423.11 gi|325969248|ref|YP_004245440.1| - 3.8e-72 242.6 0.1 4.7e-72 242.3 0.1 1.1 1 0 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|325969248|ref|YP_004245440.1| - 7.6e-10 39.3 0.1 1.9e-09 38.0 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|325969248|ref|YP_004245440.1| - 2.3e-09 37.0 0.1 3.8e-09 36.2 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|325969248|ref|YP_004245440.1| - 6.2e-07 29.2 0.0 1e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF4332 PF14229.6 gi|325969248|ref|YP_004245440.1| - 7.2e-05 23.0 0.1 0.00049 20.3 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4332) HHH PF00633.23 gi|325969248|ref|YP_004245440.1| - 0.0013 18.5 0.0 0.0078 16.0 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|325969248|ref|YP_004245440.1| - 0.016 15.5 0.0 0.03 14.6 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus AAA_24 PF13479.6 gi|325969248|ref|YP_004245440.1| - 0.044 13.5 0.1 0.1 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|325969248|ref|YP_004245440.1| - 0.063 13.6 0.0 0.15 12.4 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif AAA_18 PF13238.6 gi|325969248|ref|YP_004245440.1| - 0.064 13.8 0.1 0.43 11.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain Sigma70_r3 PF04539.16 gi|325969248|ref|YP_004245440.1| - 0.09 12.9 0.0 0.26 11.4 0.0 1.8 1 0 0 1 1 1 0 Sigma-70 region 3 ABC_tran PF00005.27 gi|325969248|ref|YP_004245440.1| - 0.17 12.4 0.0 0.29 11.6 0.0 1.3 1 0 0 1 1 1 0 ABC transporter TGS PF02824.21 gi|325969249|ref|YP_004245441.1| - 5.8e-17 61.5 0.0 1.3e-16 60.4 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|325969249|ref|YP_004245441.1| - 2.2e-16 59.8 0.9 3.6e-16 59.1 0.4 1.7 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|325969249|ref|YP_004245441.1| - 1.5e-10 41.2 0.0 3.2e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase YchF-GTPase_C PF06071.13 gi|325969249|ref|YP_004245441.1| - 0.00099 19.3 0.0 0.078 13.2 0.0 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF933) FeoB_N PF02421.18 gi|325969249|ref|YP_004245441.1| - 0.0012 18.4 0.2 0.0039 16.7 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|325969249|ref|YP_004245441.1| - 0.0012 18.4 0.1 1.3 8.5 0.0 3.1 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|325969249|ref|YP_004245441.1| - 0.005 17.1 0.0 0.054 13.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|325969249|ref|YP_004245441.1| - 0.0057 16.3 0.0 1.2 8.7 0.1 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|325969249|ref|YP_004245441.1| - 0.012 15.6 0.1 0.21 11.6 0.0 2.3 2 0 0 2 2 2 0 Dynamin family ABC_tran PF00005.27 gi|325969249|ref|YP_004245441.1| - 0.014 16.0 0.1 0.081 13.4 0.0 2.1 1 1 1 2 2 2 0 ABC transporter AAA_21 PF13304.6 gi|325969249|ref|YP_004245441.1| - 0.018 14.9 0.0 0.038 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|325969249|ref|YP_004245441.1| - 0.027 14.9 0.0 0.068 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Roc PF08477.13 gi|325969249|ref|YP_004245441.1| - 0.031 14.5 0.0 0.095 12.9 0.0 1.9 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase ATPase_2 PF01637.18 gi|325969249|ref|YP_004245441.1| - 0.077 12.9 0.7 0.19 11.6 0.0 2.0 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea SRPRB PF09439.10 gi|325969249|ref|YP_004245441.1| - 0.078 12.4 0.0 0.26 10.7 0.0 2.0 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|325969249|ref|YP_004245441.1| - 0.084 12.8 0.1 5.5 6.9 0.0 2.6 2 0 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|325969249|ref|YP_004245441.1| - 0.11 12.3 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain OrfB_IS605 PF01385.19 gi|325969250|ref|YP_004245442.1| - 5.1e-10 39.6 0.0 7.9e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 Probable transposase DUF4279 PF14106.6 gi|325969251|ref|YP_004245443.1| - 0.13 12.5 0.5 19 5.5 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4279) AAA PF00004.29 gi|325969252|ref|YP_004245444.1| - 5.2e-17 62.5 0.0 1.2e-16 61.3 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|325969252|ref|YP_004245444.1| - 3.8e-14 52.8 0.0 3.1e-10 40.1 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|325969252|ref|YP_004245444.1| - 1.9e-12 47.4 0.0 4.3e-12 46.3 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain RuvB_N PF05496.12 gi|325969252|ref|YP_004245444.1| - 9.4e-08 32.0 0.0 2.2e-07 30.8 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|325969252|ref|YP_004245444.1| - 2.1e-07 31.3 0.1 0.019 15.2 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|325969252|ref|YP_004245444.1| - 2.5e-07 30.8 0.0 4.7e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325969252|ref|YP_004245444.1| - 1.9e-06 28.4 0.0 0.0046 17.4 0.0 2.5 1 1 1 2 2 2 2 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|325969252|ref|YP_004245444.1| - 2.9e-06 27.5 0.1 1e-05 25.7 0.1 2.0 1 1 0 1 1 1 1 AAA C-terminal domain Mg_chelatase PF01078.21 gi|325969252|ref|YP_004245444.1| - 2.3e-05 23.9 0.0 0.00041 19.8 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|325969252|ref|YP_004245444.1| - 7.4e-05 22.8 0.1 0.00028 20.9 0.0 2.0 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|325969252|ref|YP_004245444.1| - 9.3e-05 22.4 0.0 0.00018 21.5 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|325969252|ref|YP_004245444.1| - 9.3e-05 22.1 0.0 0.00021 21.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|325969252|ref|YP_004245444.1| - 0.00011 21.9 0.0 0.00029 20.6 0.0 1.6 2 0 0 2 2 1 1 AAA domain PhoH PF02562.16 gi|325969252|ref|YP_004245444.1| - 0.00015 21.3 0.0 0.057 12.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|325969252|ref|YP_004245444.1| - 0.00015 21.5 0.2 0.00074 19.3 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_3 PF07726.11 gi|325969252|ref|YP_004245444.1| - 0.00017 21.5 0.0 0.00027 20.8 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|325969252|ref|YP_004245444.1| - 0.00023 20.9 0.0 0.00045 20.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein ResIII PF04851.15 gi|325969252|ref|YP_004245444.1| - 0.00031 20.8 0.0 0.0016 18.5 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|325969252|ref|YP_004245444.1| - 0.00069 20.2 0.0 0.0028 18.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|325969252|ref|YP_004245444.1| - 0.0014 17.9 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_11 PF13086.6 gi|325969252|ref|YP_004245444.1| - 0.0054 16.6 0.0 0.017 14.9 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|325969252|ref|YP_004245444.1| - 0.0066 16.0 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_33 PF13671.6 gi|325969252|ref|YP_004245444.1| - 0.01 16.0 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|325969252|ref|YP_004245444.1| - 0.011 16.1 0.1 0.17 12.2 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|325969252|ref|YP_004245444.1| - 0.018 15.3 0.0 0.046 14.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.22 gi|325969252|ref|YP_004245444.1| - 0.02 15.3 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MCM PF00493.23 gi|325969252|ref|YP_004245444.1| - 0.02 14.0 0.0 0.049 12.7 0.0 1.6 1 1 0 1 1 1 0 MCM P-loop domain T2SSE PF00437.20 gi|325969252|ref|YP_004245444.1| - 0.031 13.3 0.0 0.12 11.4 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein MeaB PF03308.16 gi|325969252|ref|YP_004245444.1| - 0.038 13.0 0.8 0.24 10.3 0.1 2.5 3 1 1 4 4 4 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Sigma54_activat PF00158.26 gi|325969252|ref|YP_004245444.1| - 0.048 13.4 0.0 4.2 7.1 0.0 2.6 3 0 0 3 3 2 0 Sigma-54 interaction domain PEPCK_ATP PF01293.20 gi|325969252|ref|YP_004245444.1| - 0.049 12.3 0.0 0.076 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Viral_helicase1 PF01443.18 gi|325969252|ref|YP_004245444.1| - 0.051 13.3 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|325969252|ref|YP_004245444.1| - 0.054 13.4 0.0 0.82 9.6 0.0 2.4 1 1 1 2 2 2 0 NTPase ATPase_2 PF01637.18 gi|325969252|ref|YP_004245444.1| - 0.067 13.1 0.0 0.21 11.5 0.0 1.7 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_23 PF13476.6 gi|325969252|ref|YP_004245444.1| - 0.08 13.4 0.0 0.13 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|325969252|ref|YP_004245444.1| - 0.081 12.7 0.2 1.4 8.7 0.0 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase DNA_pol3_gamma3 PF12169.8 gi|325969252|ref|YP_004245444.1| - 0.11 12.4 0.1 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 DNA polymerase III subunits gamma and tau domain III DUF815 PF05673.13 gi|325969252|ref|YP_004245444.1| - 0.11 11.6 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|325969252|ref|YP_004245444.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain TniB PF05621.11 gi|325969252|ref|YP_004245444.1| - 0.13 11.6 0.0 6.9 6.0 0.0 2.5 3 0 0 3 3 2 0 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|325969252|ref|YP_004245444.1| - 0.13 11.3 0.0 0.33 10.0 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 gi|325969252|ref|YP_004245444.1| - 0.16 11.2 0.0 0.72 9.0 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|325969252|ref|YP_004245444.1| - 0.17 11.8 0.0 1.2 9.0 0.0 2.1 1 1 0 1 1 1 0 NACHT domain tRNA_lig_kinase PF08303.11 gi|325969252|ref|YP_004245444.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 tRNA ligase kinase domain TFIIB PF00382.19 gi|325969253|ref|YP_004245445.1| - 1.7e-34 117.7 2.5 8.5e-17 61.0 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|325969253|ref|YP_004245445.1| - 1e-16 60.1 0.2 1.6e-16 59.5 0.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|325969253|ref|YP_004245445.1| - 5.5e-05 22.7 0.9 9.1e-05 22.1 0.9 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Ribosomal_S27e PF01667.17 gi|325969253|ref|YP_004245445.1| - 5.7e-05 22.7 1.1 0.00011 21.8 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S27 Cyclin_N PF00134.23 gi|325969253|ref|YP_004245445.1| - 8.6e-05 22.3 0.5 0.021 14.6 0.1 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain zf-ribbon_3 PF13248.6 gi|325969253|ref|YP_004245445.1| - 0.0056 16.0 1.5 2.2 7.8 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|325969253|ref|YP_004245445.1| - 0.0088 16.4 0.1 0.019 15.4 0.1 1.6 1 0 0 1 1 1 1 Restriction alleviation protein Lar Sigma70_r4 PF04545.16 gi|325969253|ref|YP_004245445.1| - 0.012 15.1 0.5 0.34 10.4 0.2 3.2 3 0 0 3 3 3 0 Sigma-70, region 4 zf-RING_9 PF13901.6 gi|325969253|ref|YP_004245445.1| - 0.013 15.5 0.2 0.03 14.3 0.2 1.5 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon Cyclin_C PF02984.19 gi|325969253|ref|YP_004245445.1| - 0.016 15.3 0.1 4.2 7.5 0.0 2.9 3 0 0 3 3 3 0 Cyclin, C-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|325969253|ref|YP_004245445.1| - 0.027 14.4 1.0 0.091 12.8 1.1 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HTH_Tnp_ISL3 PF13542.6 gi|325969253|ref|YP_004245445.1| - 0.061 12.8 3.4 0.72 9.3 0.3 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Zn-ribbon_8 PF09723.10 gi|325969253|ref|YP_004245445.1| - 0.064 13.4 0.1 6.6 6.9 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|325969253|ref|YP_004245445.1| - 0.073 12.8 1.9 8.3 6.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Prim_Zn_Ribbon PF08273.12 gi|325969253|ref|YP_004245445.1| - 0.075 13.3 0.2 0.16 12.3 0.2 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_5 PF13719.6 gi|325969253|ref|YP_004245445.1| - 0.088 12.6 0.6 0.088 12.6 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1936 PF09151.10 gi|325969253|ref|YP_004245445.1| - 0.11 12.4 0.2 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) TFIIB_C_1 PF18542.1 gi|325969253|ref|YP_004245445.1| - 0.15 12.1 2.3 1.4 9.0 0.1 2.8 1 1 2 3 3 3 0 Transcription factor IIB C-terminal module 1 Auto_anti-p27 PF06677.12 gi|325969253|ref|YP_004245445.1| - 0.19 11.9 0.9 0.36 11.0 0.9 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF35_N PF12172.8 gi|325969253|ref|YP_004245445.1| - 0.19 11.6 0.5 5.9 6.9 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HIT PF01230.23 gi|325969254|ref|YP_004245446.1| - 0.00046 20.9 0.1 0.0009 19.9 0.0 1.5 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.15 gi|325969254|ref|YP_004245446.1| - 0.0091 15.9 0.9 0.016 15.0 0.7 1.6 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 WYL PF13280.6 gi|325969256|ref|YP_004245448.1| - 0.11 12.5 0.1 0.2 11.7 0.0 1.5 2 0 0 2 2 2 0 WYL domain Aconitase_B_N PF11791.8 gi|325969256|ref|YP_004245448.1| - 0.15 12.1 0.1 1.2 9.2 0.0 2.1 2 0 0 2 2 2 0 Aconitate B N-terminal domain Big_11 PF18200.1 gi|325969256|ref|YP_004245448.1| - 0.19 11.6 0.0 0.36 10.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain PalH PF08733.10 gi|325969258|ref|YP_004245450.1| - 0.64 9.0 14.1 0.8 8.6 14.1 1.3 1 0 0 1 1 1 0 PalH/RIM21 Ribosomal_L13e PF01294.18 gi|325969259|ref|YP_004245451.1| - 9e-10 38.7 0.6 1.8e-09 37.7 0.6 1.7 1 1 0 1 1 1 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|325969259|ref|YP_004245451.1| - 5.4e-05 23.0 0.9 9.2e-05 22.2 0.9 1.3 1 0 0 1 1 1 1 Ribosomal L15 Phage_P2_GpE PF06528.12 gi|325969259|ref|YP_004245451.1| - 1.7 8.3 4.2 0.37 10.4 0.4 1.8 2 0 0 2 2 2 0 Phage P2 GpE HAD_2 PF13419.6 gi|325969260|ref|YP_004245452.1| - 8.9e-14 52.0 0.0 1.6e-13 51.1 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|325969260|ref|YP_004245452.1| - 7.6e-09 36.2 0.0 7.6e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|325969260|ref|YP_004245452.1| - 0.0045 17.0 0.0 0.0085 16.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|325969260|ref|YP_004245452.1| - 0.018 15.2 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase RNA_binding PF01877.17 gi|325969261|ref|YP_004245453.1| - 5.1e-17 62.2 0.1 1.1e-16 61.2 0.1 1.5 1 1 0 1 1 1 1 RNA binding Pribosyltran_N PF13793.6 gi|325969262|ref|YP_004245454.1| - 6e-22 77.8 0.0 1.8e-18 66.6 0.0 2.2 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|325969262|ref|YP_004245454.1| - 1.3e-17 63.7 0.0 7.1e-17 61.4 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|325969262|ref|YP_004245454.1| - 3.5e-10 40.2 0.8 6.9e-10 39.3 0.8 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|325969262|ref|YP_004245454.1| - 4e-05 23.2 0.0 6.9e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase T2SSF PF00482.23 gi|325969263|ref|YP_004245455.1| - 5.1e-09 36.1 3.2 7.9e-05 22.6 0.0 4.2 3 1 0 3 3 3 2 Type II secretion system (T2SS), protein F Rhodanese_C PF12368.8 gi|325969264|ref|YP_004245456.1| - 0.0012 19.2 3.3 0.0014 19.0 3.3 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal DZR PF12773.7 gi|325969264|ref|YP_004245456.1| - 0.0013 18.7 6.7 0.57 10.3 6.8 2.4 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|325969264|ref|YP_004245456.1| - 0.0017 18.0 2.0 0.0017 18.0 2.0 1.8 1 1 0 1 1 1 1 A2L zinc ribbon domain Prok-RING_1 PF14446.6 gi|325969264|ref|YP_004245456.1| - 0.003 17.5 11.2 0.0069 16.3 10.9 1.7 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-C3HC4_3 PF13920.6 gi|325969264|ref|YP_004245456.1| - 0.0058 16.5 7.0 0.044 13.7 7.0 1.9 1 1 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) HscB_4_cys PF18256.1 gi|325969264|ref|YP_004245456.1| - 0.01 15.6 4.4 0.01 15.6 4.4 2.7 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif Nudix_N_2 PF14803.6 gi|325969264|ref|YP_004245456.1| - 0.011 15.7 9.4 0.13 12.2 0.6 3.0 3 0 0 3 3 3 0 Nudix N-terminal C1_2 PF03107.16 gi|325969264|ref|YP_004245456.1| - 0.022 15.1 8.8 0.022 15.1 8.8 1.9 1 1 1 2 2 2 0 C1 domain C1_1 PF00130.22 gi|325969264|ref|YP_004245456.1| - 0.03 14.2 5.2 0.035 14.0 5.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.6 gi|325969264|ref|YP_004245456.1| - 0.037 13.7 3.1 0.037 13.7 3.1 3.1 2 1 0 3 3 3 0 zinc-ribbon domain DUF4428 PF14471.6 gi|325969264|ref|YP_004245456.1| - 0.089 12.7 7.2 0.29 11.1 1.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-AN1 PF01428.16 gi|325969264|ref|YP_004245456.1| - 0.11 12.6 10.4 1.7 8.9 10.6 2.2 1 1 0 1 1 1 0 AN1-like Zinc finger zinc-ribbons_6 PF07191.12 gi|325969264|ref|YP_004245456.1| - 0.13 12.3 6.2 0.45 10.5 6.2 1.9 1 1 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|325969264|ref|YP_004245456.1| - 0.21 11.6 5.1 0.82 9.7 5.1 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|325969264|ref|YP_004245456.1| - 2.4 7.9 13.2 15 5.4 5.3 3.0 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-HIT PF04438.16 gi|325969264|ref|YP_004245456.1| - 2.6 8.0 17.6 15 5.6 10.3 3.1 1 1 1 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.6 gi|325969264|ref|YP_004245456.1| - 2.7 7.5 16.0 5.3 6.6 0.7 3.8 2 1 1 3 3 3 0 zinc-ribbon domain ADK_lid PF05191.14 gi|325969264|ref|YP_004245456.1| - 3.4 7.7 9.6 11 6.1 6.7 2.6 2 1 0 2 2 2 0 Adenylate kinase, active site lid T2SSE PF00437.20 gi|325969268|ref|YP_004245460.1| - 2.5e-41 141.5 0.0 4e-41 140.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|325969268|ref|YP_004245460.1| - 0.00093 18.9 0.3 0.0058 16.3 0.1 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|325969268|ref|YP_004245460.1| - 0.0018 18.2 0.0 0.0056 16.6 0.0 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|325969268|ref|YP_004245460.1| - 0.0029 16.9 0.0 0.0054 16.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|325969268|ref|YP_004245460.1| - 0.0042 17.4 0.1 0.0085 16.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|325969268|ref|YP_004245460.1| - 0.0047 17.5 0.0 0.016 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|325969268|ref|YP_004245460.1| - 0.013 15.8 0.0 0.032 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|325969268|ref|YP_004245460.1| - 0.015 15.7 0.0 0.029 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|325969268|ref|YP_004245460.1| - 0.018 15.1 0.1 0.049 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|325969268|ref|YP_004245460.1| - 0.028 14.9 2.1 0.034 14.7 0.2 2.0 3 0 0 3 3 3 0 AAA domain TsaE PF02367.17 gi|325969268|ref|YP_004245460.1| - 0.032 14.2 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|325969268|ref|YP_004245460.1| - 0.039 13.9 0.0 0.12 12.2 0.0 1.9 1 0 0 1 1 1 0 NTPase Dynamin_N PF00350.23 gi|325969268|ref|YP_004245460.1| - 0.042 13.9 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 Dynamin family ABC_tran PF00005.27 gi|325969268|ref|YP_004245460.1| - 0.042 14.4 0.0 0.093 13.2 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|325969268|ref|YP_004245460.1| - 0.044 12.9 0.0 0.093 11.8 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 cobW PF02492.19 gi|325969268|ref|YP_004245460.1| - 0.072 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.9 gi|325969268|ref|YP_004245460.1| - 0.074 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Lung_7-TM_R PF06814.13 gi|325969269|ref|YP_004245461.1| - 0.0069 15.7 0.2 0.01 15.1 0.2 1.2 1 0 0 1 1 1 1 Lung seven transmembrane receptor LTD PF00932.19 gi|325969270|ref|YP_004245462.1| - 0.0093 16.3 0.1 0.016 15.6 0.1 1.4 1 1 0 1 1 1 1 Lamin Tail Domain Ribosomal_S5 PF00333.20 gi|325969271|ref|YP_004245463.1| - 3.9e-23 81.2 3.1 6.8e-23 80.4 3.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|325969271|ref|YP_004245463.1| - 3.4e-22 77.7 0.0 5.9e-22 76.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|325969272|ref|YP_004245464.1| - 5e-11 42.3 0.0 9.5e-11 41.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|325969273|ref|YP_004245465.1| - 9.4e-21 74.8 1.0 1e-20 74.7 0.2 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ANAPC2 PF08672.11 gi|325969273|ref|YP_004245465.1| - 0.046 14.2 0.0 0.085 13.4 0.0 1.4 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 TrmB PF01978.19 gi|325969273|ref|YP_004245465.1| - 0.047 13.6 0.1 0.1 12.5 0.1 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|325969273|ref|YP_004245465.1| - 0.14 12.1 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix SecY PF00344.20 gi|325969274|ref|YP_004245466.1| - 4.6e-58 196.9 29.2 5.7e-58 196.6 29.2 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|325969274|ref|YP_004245466.1| - 0.0048 16.7 1.1 0.017 15.0 1.1 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p Methyltrn_RNA_3 PF02598.17 gi|325969276|ref|YP_004245468.1| - 1e-53 182.7 0.0 1.3e-53 182.4 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.22 gi|325969277|ref|YP_004245469.1| - 9.3e-69 232.2 0.0 1.4e-68 231.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|325969278|ref|YP_004245470.1| - 2.1e-40 138.5 0.0 2.4e-40 138.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|325969279|ref|YP_004245471.1| - 5.8e-16 58.6 6.4 6.2e-15 55.3 6.4 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 NAD_binding_7 PF13241.6 gi|325969279|ref|YP_004245471.1| - 0.067 13.6 0.2 0.081 13.4 0.2 1.0 1 0 0 1 1 1 0 Putative NAD(P)-binding PIN_12 PF16289.5 gi|325969280|ref|YP_004245472.1| - 0.43 11.1 4.5 0.19 12.2 1.6 1.7 1 1 1 2 2 2 0 PIN domain Thioredoxin_3 PF13192.6 gi|325969281|ref|YP_004245473.1| - 7.6e-16 57.9 1.4 4.6e-09 36.2 0.4 2.7 3 0 0 3 3 3 2 Thioredoxin domain Thioredoxin PF00085.20 gi|325969281|ref|YP_004245473.1| - 6.4e-08 32.5 0.1 0.00028 20.8 0.0 2.7 2 1 0 2 2 2 2 Thioredoxin Thioredoxin_9 PF14595.6 gi|325969281|ref|YP_004245473.1| - 0.0015 18.3 0.0 0.066 13.0 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin RNA_pol_Rpb5_C PF01191.19 gi|325969281|ref|YP_004245473.1| - 0.0021 17.9 0.2 0.0076 16.1 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb5, C-terminal domain TraF PF13728.6 gi|325969281|ref|YP_004245473.1| - 0.0032 17.3 0.0 0.065 13.0 0.0 2.5 3 0 0 3 3 3 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|325969281|ref|YP_004245473.1| - 0.037 14.5 3.7 1 9.8 0.7 3.4 2 2 0 2 2 2 0 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|325969281|ref|YP_004245473.1| - 0.045 14.1 0.6 1.9 8.9 0.0 3.3 2 1 0 2 2 2 0 Thioredoxin-like OST3_OST6 PF04756.13 gi|325969281|ref|YP_004245473.1| - 0.063 12.6 0.0 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 OST3 / OST6 family, transporter family Glutaredoxin PF00462.24 gi|325969281|ref|YP_004245473.1| - 0.096 12.9 5.7 0.3 11.3 0.2 3.6 3 1 0 3 3 3 0 Glutaredoxin Ham1p_like PF01725.16 gi|325969282|ref|YP_004245474.1| - 3.1e-44 151.1 0.0 3.4e-44 151.0 0.0 1.0 1 0 0 1 1 1 1 Ham1 family dCache_2 PF08269.11 gi|325969282|ref|YP_004245474.1| - 0.16 11.2 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 Cache domain DUF4984 PF16372.5 gi|325969283|ref|YP_004245475.1| - 0.035 14.0 0.5 0.055 13.4 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4984) TPP1 PF10341.9 gi|325969283|ref|YP_004245475.1| - 0.048 13.6 0.3 0.18 11.8 0.2 2.0 1 1 1 2 2 2 0 Shelterin complex subunit, TPP1/ACD SMG1 PF15785.5 gi|325969283|ref|YP_004245475.1| - 0.21 9.9 3.0 0.22 9.8 3.0 1.1 1 0 0 1 1 1 0 Serine/threonine-protein kinase smg-1 zf-RRN7 PF11781.8 gi|325969284|ref|YP_004245476.1| - 1.1e-06 28.2 0.0 1.3e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 gi|325969284|ref|YP_004245476.1| - 0.0019 17.9 1.8 0.053 13.2 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|325969284|ref|YP_004245476.1| - 0.002 18.3 0.2 0.0022 18.1 0.2 1.2 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|325969284|ref|YP_004245476.1| - 0.0052 16.1 4.3 0.11 11.9 4.3 2.1 1 1 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|325969284|ref|YP_004245476.1| - 0.027 14.4 0.2 0.036 14.0 0.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2HC5 PF06221.13 gi|325969284|ref|YP_004245476.1| - 0.033 14.2 0.6 0.051 13.6 0.6 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Vps36-NZF-N PF16988.5 gi|325969284|ref|YP_004245476.1| - 0.068 12.6 0.9 3.2 7.2 0.0 2.1 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain C1_1 PF00130.22 gi|325969284|ref|YP_004245476.1| - 0.069 13.0 0.3 7.4 6.5 0.1 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|325969284|ref|YP_004245476.1| - 0.076 13.0 1.3 0.29 11.2 1.5 1.7 1 1 1 2 2 2 0 Double zinc ribbon Herpes_UL49_1 PF03117.14 gi|325969284|ref|YP_004245476.1| - 0.13 11.6 2.3 2.7 7.2 0.1 2.1 1 1 1 2 2 2 0 UL49 family DUF35_N PF12172.8 gi|325969284|ref|YP_004245476.1| - 0.13 12.1 0.5 7.9 6.5 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|325969284|ref|YP_004245476.1| - 0.4 10.2 3.2 2.1 7.9 3.2 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-BED PF02892.15 gi|325969284|ref|YP_004245476.1| - 5.4 7.1 5.9 1.5 8.9 1.4 2.2 1 1 1 2 2 2 0 BED zinc finger DEAD PF00270.29 gi|325969285|ref|YP_004245477.1| - 2e-31 109.1 0.0 6e-31 107.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|325969285|ref|YP_004245477.1| - 1.9e-22 80.0 0.1 5.6e-22 78.5 0.1 1.9 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|325969285|ref|YP_004245477.1| - 3.6e-19 69.1 0.0 7.6e-18 64.9 0.1 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|325969285|ref|YP_004245477.1| - 2.1e-09 37.6 0.0 5.6e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|325969285|ref|YP_004245477.1| - 0.015 15.3 0.1 0.036 14.1 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_19 PF13245.6 gi|325969285|ref|YP_004245477.1| - 0.046 14.1 0.0 0.35 11.2 0.0 2.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|325969285|ref|YP_004245477.1| - 0.07 12.7 0.1 0.22 11.1 0.1 1.9 1 0 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.10 gi|325969285|ref|YP_004245477.1| - 0.071 13.2 0.4 0.15 12.2 0.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|325969285|ref|YP_004245477.1| - 0.13 12.2 0.4 0.64 10.0 0.4 2.2 1 1 0 1 1 1 0 Transposase zinc-ribbon domain CYTH PF01928.21 gi|325969286|ref|YP_004245478.1| - 5.2e-37 127.5 2.5 6.3e-37 127.2 2.5 1.0 1 0 0 1 1 1 1 CYTH domain FA_desaturase_2 PF03405.14 gi|325969286|ref|YP_004245478.1| - 0.012 14.4 0.1 0.02 13.8 0.1 1.3 1 0 0 1 1 1 0 Fatty acid desaturase AA_permease_2 PF13520.6 gi|325969287|ref|YP_004245479.1| - 5.4e-16 58.4 74.1 6.9e-16 58.1 74.1 1.1 1 0 0 1 1 1 1 Amino acid permease SBP_bac_11 PF13531.6 gi|325969288|ref|YP_004245480.1| - 3.8e-34 118.4 0.2 5.4e-34 117.9 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein B277 PF17623.2 gi|325969288|ref|YP_004245480.1| - 0.23 10.5 9.0 0.57 9.2 9.0 1.7 1 0 0 1 1 1 0 Domain of unknown function DUF3487 PF11990.8 gi|325969288|ref|YP_004245480.1| - 5.9 6.8 6.4 25 4.8 4.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3487) YhhN PF07947.14 gi|325969288|ref|YP_004245480.1| - 6.4 6.3 8.2 2.4 7.8 5.3 1.8 2 0 0 2 2 2 0 YhhN family BPD_transp_1 PF00528.22 gi|325969289|ref|YP_004245481.1| - 2.6e-17 63.2 21.8 2.6e-17 63.2 21.8 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|325969290|ref|YP_004245482.1| - 1.9e-31 109.4 0.0 2.6e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325969290|ref|YP_004245482.1| - 1.5e-09 38.1 0.1 0.00013 21.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325969290|ref|YP_004245482.1| - 2e-05 24.1 0.0 0.00016 21.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|325969290|ref|YP_004245482.1| - 0.0016 18.2 0.0 0.005 16.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain TOBE_2 PF08402.10 gi|325969290|ref|YP_004245482.1| - 0.0023 18.1 0.1 0.0098 16.0 0.1 2.2 1 1 0 1 1 1 1 TOBE domain TniB PF05621.11 gi|325969290|ref|YP_004245482.1| - 0.0067 15.9 0.1 0.055 12.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial TniB protein T2SSE PF00437.20 gi|325969290|ref|YP_004245482.1| - 0.0094 15.0 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein SbcCD_C PF13558.6 gi|325969290|ref|YP_004245482.1| - 0.0097 16.1 0.4 0.2 11.9 0.1 2.6 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|325969290|ref|YP_004245482.1| - 0.014 15.2 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|325969290|ref|YP_004245482.1| - 0.022 15.2 0.2 0.039 14.5 0.2 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|325969290|ref|YP_004245482.1| - 0.023 14.6 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF87 PF01935.17 gi|325969290|ref|YP_004245482.1| - 0.028 14.5 0.2 0.05 13.7 0.2 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA PF00004.29 gi|325969290|ref|YP_004245482.1| - 0.039 14.4 0.2 0.5 10.8 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|325969290|ref|YP_004245482.1| - 0.043 14.2 0.0 0.076 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|325969290|ref|YP_004245482.1| - 0.079 13.2 0.7 0.38 11.0 0.7 2.0 1 1 0 1 1 1 0 AAA domain TrkA_C PF02080.21 gi|325969290|ref|YP_004245482.1| - 0.084 12.7 0.1 10 6.0 0.0 2.6 2 0 0 2 2 2 0 TrkA-C domain MMR_HSR1 PF01926.23 gi|325969290|ref|YP_004245482.1| - 0.1 12.7 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|325969290|ref|YP_004245482.1| - 0.1 12.5 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|325969290|ref|YP_004245482.1| - 0.14 12.7 0.0 0.48 11.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|325969290|ref|YP_004245482.1| - 0.18 11.4 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|325969290|ref|YP_004245482.1| - 0.21 10.2 0.0 0.34 9.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Malic_M PF03949.15 gi|325969291|ref|YP_004245483.1| - 2.9e-25 89.0 0.3 8.6e-24 84.2 0.3 2.1 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|325969291|ref|YP_004245483.1| - 2.6e-24 86.0 0.0 4e-21 75.6 0.0 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain ThiF PF00899.21 gi|325969291|ref|YP_004245483.1| - 0.21 10.9 0.3 0.45 9.8 0.3 1.4 1 0 0 1 1 1 0 ThiF family UPF0147 PF03685.13 gi|325969292|ref|YP_004245484.1| - 1.8e-30 104.8 0.1 2.1e-30 104.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HTH_24 PF13412.6 gi|325969293|ref|YP_004245485.1| - 3.2e-15 55.4 1.2 3.2e-15 55.4 1.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|325969293|ref|YP_004245485.1| - 8.4e-12 44.7 0.1 8.4e-12 44.7 0.1 1.7 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|325969293|ref|YP_004245485.1| - 1.3e-11 44.3 0.1 1.9e-11 43.8 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|325969293|ref|YP_004245485.1| - 3.9e-08 33.1 0.5 1.1e-07 31.7 0.5 1.9 1 1 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|325969293|ref|YP_004245485.1| - 1.7e-06 28.0 0.0 3.5e-06 27.0 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.22 gi|325969293|ref|YP_004245485.1| - 5.9e-06 26.1 0.6 1.3e-05 25.1 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|325969293|ref|YP_004245485.1| - 2.7e-05 23.9 0.7 4.9e-05 23.1 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|325969293|ref|YP_004245485.1| - 2.9e-05 24.1 0.0 4.5e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_30 PF13556.6 gi|325969293|ref|YP_004245485.1| - 6.8e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TrmB PF01978.19 gi|325969293|ref|YP_004245485.1| - 0.00012 21.9 0.1 0.00044 20.1 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.12 gi|325969293|ref|YP_004245485.1| - 0.00027 20.6 0.1 0.00054 19.7 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|325969293|ref|YP_004245485.1| - 0.0003 20.5 0.0 0.00063 19.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_WhiA PF02650.14 gi|325969293|ref|YP_004245485.1| - 0.00058 20.1 0.4 0.0013 19.1 0.1 1.7 2 0 0 2 2 1 1 WhiA C-terminal HTH domain HTH_IclR PF09339.10 gi|325969293|ref|YP_004245485.1| - 0.00071 19.3 0.0 0.0023 17.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|325969293|ref|YP_004245485.1| - 0.00084 19.3 0.2 0.0014 18.5 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|325969293|ref|YP_004245485.1| - 0.0026 17.6 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|325969293|ref|YP_004245485.1| - 0.0035 17.1 0.0 0.0063 16.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|325969293|ref|YP_004245485.1| - 0.004 17.2 3.1 0.0065 16.5 3.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.7 gi|325969293|ref|YP_004245485.1| - 0.0051 17.0 0.1 0.011 15.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Mga PF05043.13 gi|325969293|ref|YP_004245485.1| - 0.0053 17.3 0.1 0.011 16.3 0.1 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_8 PF02954.19 gi|325969293|ref|YP_004245485.1| - 0.0098 15.7 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family DDRGK PF09756.9 gi|325969293|ref|YP_004245485.1| - 0.013 15.2 0.2 0.019 14.6 0.2 1.2 1 0 0 1 1 1 0 DDRGK domain HTH_Crp_2 PF13545.6 gi|325969293|ref|YP_004245485.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|325969293|ref|YP_004245485.1| - 0.021 14.9 0.0 0.04 14.1 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_22 PF13309.6 gi|325969293|ref|YP_004245485.1| - 0.032 14.3 0.0 0.072 13.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.19 gi|325969293|ref|YP_004245485.1| - 0.047 13.9 0.1 0.13 12.5 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_6 PF01418.17 gi|325969293|ref|YP_004245485.1| - 0.049 13.6 0.0 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family FUR PF01475.19 gi|325969293|ref|YP_004245485.1| - 0.05 13.8 0.1 0.15 12.2 0.0 1.8 2 0 0 2 2 2 0 Ferric uptake regulator family HTH_38 PF13936.6 gi|325969293|ref|YP_004245485.1| - 0.051 13.4 0.0 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|325969293|ref|YP_004245485.1| - 0.057 13.3 0.3 0.29 11.0 0.2 1.9 2 0 0 2 2 2 0 TFIIE alpha subunit UPF0122 PF04297.14 gi|325969293|ref|YP_004245485.1| - 0.064 13.5 0.2 0.12 12.6 0.0 1.5 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_34 PF13601.6 gi|325969293|ref|YP_004245485.1| - 0.08 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_1_2 PF13022.6 gi|325969293|ref|YP_004245485.1| - 0.098 12.8 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_1 PF00126.27 gi|325969293|ref|YP_004245485.1| - 0.12 12.4 0.0 0.31 11.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.6 gi|325969293|ref|YP_004245485.1| - 0.13 12.8 0.2 0.29 11.7 0.1 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain AsnC_trans_reg2 PF17805.1 gi|325969293|ref|YP_004245485.1| - 0.13 12.4 0.1 0.74 10.0 0.0 2.1 2 0 0 2 2 2 0 AsnC-like ligand binding domain HTH_Tnp_4 PF13613.6 gi|325969293|ref|YP_004245485.1| - 0.16 11.7 0.0 0.92 9.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix of DDE superfamily endonuclease DNA_pol_B PF00136.21 gi|325969294|ref|YP_004245486.1| - 4.5e-67 226.8 0.0 6.6e-67 226.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|325969294|ref|YP_004245486.1| - 1e-39 136.6 0.7 2.3e-38 132.2 0.2 2.5 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|325969294|ref|YP_004245486.1| - 6.1e-11 42.6 0.0 1.1e-10 41.7 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|325969294|ref|YP_004245486.1| - 7e-11 42.2 0.0 1.4e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|325969294|ref|YP_004245486.1| - 0.0094 14.9 0.1 0.028 13.3 0.1 1.7 1 1 0 1 1 1 1 DNA polymerase type B, organellar and viral RPN7 PF10602.9 gi|325969294|ref|YP_004245486.1| - 0.064 13.0 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Toprim_4 PF13662.6 gi|325969295|ref|YP_004245487.1| - 2e-07 31.4 0.1 6.9e-07 29.7 0.1 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|325969295|ref|YP_004245487.1| - 0.0002 21.7 0.0 0.00054 20.3 0.0 1.8 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|325969295|ref|YP_004245487.1| - 0.0033 17.6 0.1 0.017 15.3 0.1 2.3 1 1 0 1 1 1 1 Toprim domain PAT1 PF09770.9 gi|325969295|ref|YP_004245487.1| - 0.0073 14.7 6.2 0.0082 14.5 6.2 1.1 1 0 0 1 1 1 1 Topoisomerase II-associated protein PAT1 PBSX_XtrA PF17356.2 gi|325969295|ref|YP_004245487.1| - 0.018 14.9 0.2 0.75 9.7 0.1 2.9 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA Pex14_N PF04695.13 gi|325969295|ref|YP_004245487.1| - 0.36 11.5 14.0 0.6 10.7 14.0 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region Vps39_2 PF10367.9 gi|325969295|ref|YP_004245487.1| - 0.41 11.1 2.2 1.4 9.4 2.2 1.9 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 Peptidase_M24 PF00557.24 gi|325969296|ref|YP_004245488.1| - 1.3e-37 129.5 0.0 1.6e-37 129.2 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Prenyltransf PF01255.19 gi|325969297|ref|YP_004245489.1| - 7.5e-69 231.7 0.0 8.5e-69 231.5 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Epimerase PF01370.21 gi|325969298|ref|YP_004245490.1| - 1.5e-21 76.9 0.0 2.3e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|325969298|ref|YP_004245490.1| - 1.1e-15 58.0 0.0 1.8e-14 53.9 0.0 2.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|325969298|ref|YP_004245490.1| - 0.00055 19.2 0.0 0.00092 18.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|325969298|ref|YP_004245490.1| - 0.0014 17.8 0.0 0.0025 17.0 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain KR PF08659.10 gi|325969298|ref|YP_004245490.1| - 0.086 12.8 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 KR domain UDPG_MGDP_dh_N PF03721.14 gi|325969298|ref|YP_004245490.1| - 0.14 11.7 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain tRNA-Thr_ED PF08915.11 gi|325969299|ref|YP_004245491.1| - 2.9e-46 156.9 0.0 5.6e-46 156.0 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|325969299|ref|YP_004245491.1| - 1e-20 73.7 1.4 2.3e-20 72.6 0.7 2.0 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|325969299|ref|YP_004245491.1| - 7.8e-17 61.8 0.5 1.6e-16 60.8 0.5 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) INT_SG_DDX_CT_C PF15300.6 gi|325969299|ref|YP_004245491.1| - 0.018 14.9 0.2 0.1 12.4 0.1 2.3 2 0 0 2 2 2 0 INTS6/SAGE1/DDX26B/CT45 C-terminus HGTP_anticodon2 PF12745.7 gi|325969299|ref|YP_004245491.1| - 0.087 12.3 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs DUF981 PF06168.11 gi|325969300|ref|YP_004245492.1| - 1.2e-59 201.4 19.8 1.5e-59 201.0 19.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Nre_N PF04894.12 gi|325969301|ref|YP_004245493.1| - 4e-80 269.5 0.0 5.2e-80 269.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|325969301|ref|YP_004245493.1| - 3.3e-33 113.9 0.1 1.4e-30 105.4 0.1 2.3 2 0 0 2 2 2 2 Archaeal Nre, C-terminal UbiA PF01040.18 gi|325969302|ref|YP_004245494.1| - 8.1e-43 146.5 25.5 1.1e-42 146.1 25.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Bac_export_3 PF01313.19 gi|325969302|ref|YP_004245494.1| - 0.068 13.1 0.1 0.068 13.1 0.1 3.7 5 0 0 5 5 5 0 Bacterial export proteins, family 3 DUF87 PF01935.17 gi|325969303|ref|YP_004245495.1| - 1e-36 127.2 0.0 1.5e-36 126.6 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|325969303|ref|YP_004245495.1| - 0.00012 20.8 0.0 0.0025 16.5 0.0 2.2 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|325969303|ref|YP_004245495.1| - 0.00017 20.6 0.0 0.0037 16.2 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|325969303|ref|YP_004245495.1| - 0.032 14.5 0.0 1.4 9.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain TGT PF01702.18 gi|325969304|ref|YP_004245496.1| - 0.0013 18.0 0.0 0.12 11.5 0.0 2.1 2 0 0 2 2 2 2 Queuine tRNA-ribosyltransferase DUF2848 PF11010.8 gi|325969306|ref|YP_004245498.1| - 1.4e-63 214.1 0.0 1.7e-63 213.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2848) Ribosomal_L37ae PF01780.19 gi|325969308|ref|YP_004245500.1| - 5.8e-30 103.2 3.0 6.5e-30 103.1 3.0 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|325969308|ref|YP_004245500.1| - 0.0006 19.7 3.9 0.001 19.0 3.9 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|325969308|ref|YP_004245500.1| - 0.0012 18.7 6.3 0.16 11.9 1.0 2.3 2 0 0 2 2 2 2 SprT-like zinc ribbon domain zf-TFIIB PF13453.6 gi|325969308|ref|YP_004245500.1| - 0.0017 17.6 0.4 0.0032 16.8 0.4 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-C2H2_3 PF13878.6 gi|325969308|ref|YP_004245500.1| - 0.008 16.0 0.2 4 7.3 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.6 gi|325969308|ref|YP_004245500.1| - 0.0083 15.5 2.3 2 7.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.6 gi|325969308|ref|YP_004245500.1| - 0.0088 16.7 1.7 3.1 8.5 0.3 2.5 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IBR PF01485.21 gi|325969308|ref|YP_004245500.1| - 0.0093 16.2 0.2 0.014 15.6 0.2 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain HypA PF01155.19 gi|325969308|ref|YP_004245500.1| - 0.0099 15.9 0.1 0.013 15.5 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|325969308|ref|YP_004245500.1| - 0.019 15.1 0.3 4.7 7.4 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|325969308|ref|YP_004245500.1| - 0.026 14.6 0.8 0.073 13.1 0.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|325969308|ref|YP_004245500.1| - 0.038 13.9 1.2 0.056 13.3 1.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-LITAF-like PF10601.9 gi|325969308|ref|YP_004245500.1| - 0.04 14.2 0.6 0.72 10.2 0.1 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|325969308|ref|YP_004245500.1| - 0.041 13.8 0.5 0.07 13.1 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|325969308|ref|YP_004245500.1| - 0.068 13.1 3.0 1.9 8.5 0.4 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-ACC PF17848.1 gi|325969308|ref|YP_004245500.1| - 0.069 13.2 1.9 3.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|325969308|ref|YP_004245500.1| - 0.076 12.6 0.9 4.8 6.9 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 gi|325969308|ref|YP_004245500.1| - 0.084 12.8 4.3 1.4 8.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2225 PF09986.9 gi|325969308|ref|YP_004245500.1| - 0.097 12.4 0.4 0.14 11.9 0.4 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) DUF1451 PF07295.11 gi|325969308|ref|YP_004245500.1| - 0.15 12.1 0.2 0.21 11.6 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf_C2H2_10 PF18414.1 gi|325969308|ref|YP_004245500.1| - 0.18 11.3 6.1 0.76 9.4 0.2 2.5 3 0 0 3 3 3 0 C2H2 type zinc-finger zinc_ribbon_5 PF13719.6 gi|325969308|ref|YP_004245500.1| - 0.21 11.4 3.6 4.6 7.1 0.1 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|325969308|ref|YP_004245500.1| - 0.22 11.6 2.3 2.6 8.1 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.6 gi|325969308|ref|YP_004245500.1| - 0.24 11.9 0.6 0.24 11.9 0.6 2.3 1 1 1 2 2 2 0 Zinc-finger double domain zinc_ribbon_10 PF10058.9 gi|325969308|ref|YP_004245500.1| - 0.25 11.1 3.4 8.6 6.2 3.9 2.1 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein CpXC PF14353.6 gi|325969308|ref|YP_004245500.1| - 0.38 10.8 2.2 4.2 7.4 0.2 2.1 1 1 1 2 2 2 0 CpXC protein DUF4379 PF14311.6 gi|325969308|ref|YP_004245500.1| - 0.47 10.9 4.2 1.6 9.2 0.3 2.2 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-tcix PF14952.6 gi|325969308|ref|YP_004245500.1| - 0.49 10.0 0.1 0.49 10.0 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.9 gi|325969308|ref|YP_004245500.1| - 0.5 10.5 7.4 16 5.7 7.4 2.2 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-UDP PF14569.6 gi|325969308|ref|YP_004245500.1| - 0.94 9.6 4.2 0.28 11.3 0.5 1.8 1 1 1 2 2 2 0 Zinc-binding RING-finger Rubredoxin_2 PF18073.1 gi|325969308|ref|YP_004245500.1| - 1.2 8.9 8.5 0.77 9.5 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|325969308|ref|YP_004245500.1| - 1.6 8.3 4.5 9.4 5.8 0.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Pcc1 PF09341.10 gi|325969310|ref|YP_004245502.1| - 2.7e-05 24.2 0.1 2.9e-05 24.1 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|325969311|ref|YP_004245503.1| - 3.7e-22 78.3 16.3 4.1e-22 78.1 16.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|325969311|ref|YP_004245503.1| - 0.00063 19.8 12.0 0.017 15.1 2.1 2.1 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.8 gi|325969311|ref|YP_004245503.1| - 0.00091 16.9 7.1 0.0011 16.6 7.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Enkurin PF13864.6 gi|325969311|ref|YP_004245503.1| - 0.0021 18.4 1.0 0.0021 18.4 1.0 2.3 2 0 0 2 2 2 1 Calmodulin-binding DMPK_coil PF08826.10 gi|325969311|ref|YP_004245503.1| - 0.0034 17.5 5.0 0.0034 17.5 5.0 2.7 2 1 0 2 2 2 1 DMPK coiled coil domain like TMCO5 PF14992.6 gi|325969311|ref|YP_004245503.1| - 0.0042 16.7 9.1 0.0053 16.4 9.1 1.1 1 0 0 1 1 1 1 TMCO5 family DUF2353 PF09789.9 gi|325969311|ref|YP_004245503.1| - 0.0052 16.2 8.1 0.0062 15.9 8.1 1.0 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) IDEAL PF08858.10 gi|325969311|ref|YP_004245503.1| - 0.017 14.8 1.1 0.017 14.8 1.1 2.5 2 1 0 2 2 2 0 IDEAL domain PAF-AH_p_II PF03403.13 gi|325969311|ref|YP_004245503.1| - 0.032 12.8 0.6 0.038 12.5 0.6 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II HlyD_2 PF12700.7 gi|325969311|ref|YP_004245503.1| - 0.04 12.7 9.3 0.051 12.3 9.3 1.0 1 0 0 1 1 1 0 HlyD family secretion protein Fic_N PF13784.6 gi|325969311|ref|YP_004245503.1| - 0.051 13.6 3.6 0.12 12.5 0.2 2.3 2 1 0 2 2 2 0 Fic/DOC family N-terminal TBCC_N PF16752.5 gi|325969311|ref|YP_004245503.1| - 0.056 13.9 5.9 0.28 11.6 1.5 2.2 2 0 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain Prefoldin PF02996.17 gi|325969311|ref|YP_004245503.1| - 0.056 13.4 12.8 6.9 6.6 12.8 2.6 1 1 0 1 1 1 0 Prefoldin subunit DUF3450 PF11932.8 gi|325969311|ref|YP_004245503.1| - 0.061 12.6 11.5 0.46 9.7 1.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) TPR_MLP1_2 PF07926.12 gi|325969311|ref|YP_004245503.1| - 0.063 13.3 16.3 0.2 11.7 3.6 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.22 gi|325969311|ref|YP_004245503.1| - 0.065 13.5 10.9 0.49 10.6 1.9 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|325969311|ref|YP_004245503.1| - 0.1 12.0 14.1 0.32 10.3 14.1 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 gi|325969311|ref|YP_004245503.1| - 0.11 12.3 10.4 0.17 11.7 10.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF724) COG2 PF06148.11 gi|325969311|ref|YP_004245503.1| - 0.12 12.5 7.2 1.1 9.4 2.1 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 YscO-like PF16789.5 gi|325969311|ref|YP_004245503.1| - 0.13 12.3 11.3 0.83 9.7 2.5 2.0 2 0 0 2 2 2 0 YscO-like protein Snf7 PF03357.21 gi|325969311|ref|YP_004245503.1| - 0.16 11.6 9.1 1.4 8.5 9.1 1.9 1 1 0 1 1 1 0 Snf7 Tropomyosin_1 PF12718.7 gi|325969311|ref|YP_004245503.1| - 0.16 12.1 13.1 0.85 9.8 2.4 2.1 2 0 0 2 2 2 0 Tropomyosin like Utp12 PF04003.12 gi|325969311|ref|YP_004245503.1| - 0.17 12.2 3.1 0.19 12.0 0.3 2.1 2 1 0 2 2 2 0 Dip2/Utp12 Family CdvA PF18822.1 gi|325969311|ref|YP_004245503.1| - 0.19 11.6 10.7 1.3 8.9 1.6 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain ATG16 PF08614.11 gi|325969311|ref|YP_004245503.1| - 0.2 11.9 11.2 0.51 10.5 1.5 2.0 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Rogdi_lz PF10259.9 gi|325969311|ref|YP_004245503.1| - 0.2 11.1 5.6 0.2 11.1 1.3 2.2 1 1 0 2 2 2 0 Rogdi leucine zipper containing protein DUF948 PF06103.11 gi|325969311|ref|YP_004245503.1| - 0.2 12.0 5.3 17 5.7 5.3 2.1 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) IL2 PF00715.17 gi|325969311|ref|YP_004245503.1| - 0.2 11.6 7.2 2 8.4 0.8 2.0 1 1 1 2 2 2 0 Interleukin 2 RasGAP_C PF03836.15 gi|325969311|ref|YP_004245503.1| - 0.2 11.8 9.9 0.25 11.5 1.6 2.1 1 1 1 2 2 2 0 RasGAP C-terminus BLOC1_2 PF10046.9 gi|325969311|ref|YP_004245503.1| - 0.26 11.6 7.5 0.23 11.8 1.3 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2408 PF10303.9 gi|325969311|ref|YP_004245503.1| - 0.29 11.7 8.5 0.6 10.7 8.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) FlaC_arch PF05377.11 gi|325969311|ref|YP_004245503.1| - 0.32 11.4 9.7 2.9 8.3 1.9 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4988 PF16378.5 gi|325969311|ref|YP_004245503.1| - 0.32 10.6 3.8 1.1 9.0 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF1664 PF07889.12 gi|325969311|ref|YP_004245503.1| - 0.4 10.7 9.4 0.84 9.7 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) LUC7 PF03194.15 gi|325969311|ref|YP_004245503.1| - 0.43 10.2 5.6 0.55 9.9 1.2 2.0 1 1 1 2 2 2 0 LUC7 N_terminus Spc7 PF08317.11 gi|325969311|ref|YP_004245503.1| - 0.45 9.4 15.7 0.15 10.9 4.2 2.0 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF3086 PF11285.8 gi|325969311|ref|YP_004245503.1| - 0.45 9.6 7.0 0.62 9.1 1.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF4510 PF14971.6 gi|325969311|ref|YP_004245503.1| - 0.45 10.8 5.9 0.23 11.8 0.6 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4510) Nup54 PF13874.6 gi|325969311|ref|YP_004245503.1| - 0.48 10.5 8.4 1.6 8.8 8.4 1.8 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 MscS_porin PF12795.7 gi|325969311|ref|YP_004245503.1| - 0.52 9.8 15.6 5.1 6.6 15.6 1.9 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain JAKMIP_CC3 PF16034.5 gi|325969311|ref|YP_004245503.1| - 0.53 10.2 9.3 0.7 9.8 9.3 1.1 1 0 0 1 1 1 0 JAKMIP CC3 domain YojJ PF10372.9 gi|325969311|ref|YP_004245503.1| - 0.72 10.0 10.7 3.6 7.8 3.4 2.3 2 1 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus Spectrin PF00435.21 gi|325969311|ref|YP_004245503.1| - 0.76 10.3 9.4 1.4 9.4 4.8 2.6 1 1 1 2 2 2 0 Spectrin repeat LPP PF04728.13 gi|325969311|ref|YP_004245503.1| - 0.91 10.0 5.5 7.1 7.1 0.1 2.6 2 1 0 2 2 2 0 Lipoprotein leucine-zipper Cortex-I_coil PF09304.10 gi|325969311|ref|YP_004245503.1| - 0.93 9.7 12.2 0.8 10.0 4.0 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil LMBR1 PF04791.16 gi|325969311|ref|YP_004245503.1| - 0.95 8.3 3.0 1.1 8.0 3.0 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein Fmp27_WPPW PF10359.9 gi|325969311|ref|YP_004245503.1| - 1 8.1 6.8 1.5 7.6 6.8 1.3 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Fzo_mitofusin PF04799.13 gi|325969311|ref|YP_004245503.1| - 1 8.9 10.7 0.14 11.7 1.8 2.1 1 1 1 2 2 2 0 fzo-like conserved region NPV_P10 PF05531.12 gi|325969311|ref|YP_004245503.1| - 1 9.9 7.2 2.7 8.5 1.6 2.6 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein HMMR_N PF15905.5 gi|325969311|ref|YP_004245503.1| - 1.3 8.4 17.0 6.4 6.1 16.8 1.7 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal DivIC PF04977.15 gi|325969311|ref|YP_004245503.1| - 1.6 8.6 15.5 1.9 8.3 2.1 2.5 2 1 0 2 2 2 0 Septum formation initiator DHR10 PF18595.1 gi|325969311|ref|YP_004245503.1| - 1.7 8.7 17.9 8.2 6.5 17.9 1.8 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain WXG100 PF06013.12 gi|325969311|ref|YP_004245503.1| - 2.2 8.5 5.7 7.7 6.8 0.2 2.8 2 1 0 2 2 2 0 Proteins of 100 residues with WXG DUF2203 PF09969.9 gi|325969311|ref|YP_004245503.1| - 2.3 8.9 8.2 2.2e+02 2.6 8.2 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) APG6_N PF17675.1 gi|325969311|ref|YP_004245503.1| - 2.4 8.7 16.3 5.3 7.6 14.8 1.9 1 1 0 1 1 1 0 Apg6 coiled-coil region FlxA PF14282.6 gi|325969311|ref|YP_004245503.1| - 2.4 8.2 13.5 2 8.4 3.9 2.2 2 0 0 2 2 2 0 FlxA-like protein Atg14 PF10186.9 gi|325969311|ref|YP_004245503.1| - 2.5 7.1 10.8 4.1 6.4 10.8 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Spc24 PF08286.11 gi|325969311|ref|YP_004245503.1| - 2.5 8.4 12.8 4.5 7.6 4.3 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 HemX PF04375.14 gi|325969311|ref|YP_004245503.1| - 3.2 7.0 12.1 1.6 8.0 3.1 2.0 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4795 PF16043.5 gi|325969311|ref|YP_004245503.1| - 4.6 6.8 13.7 19 4.8 13.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Laminin_II PF06009.12 gi|325969311|ref|YP_004245503.1| - 5.2 7.1 10.8 15 5.6 10.8 1.6 1 1 0 1 1 1 0 Laminin Domain II YabA PF06156.13 gi|325969311|ref|YP_004245503.1| - 5.3 7.7 9.9 11 6.7 1.6 2.1 1 1 0 2 2 2 0 Initiation control protein YabA XhlA PF10779.9 gi|325969311|ref|YP_004245503.1| - 6.4 7.1 10.5 0.53 10.5 1.6 2.4 2 1 0 2 2 2 0 Haemolysin XhlA DUF4140 PF13600.6 gi|325969311|ref|YP_004245503.1| - 6.7 7.2 11.0 4.7 7.7 1.5 2.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) AAA_23 PF13476.6 gi|325969311|ref|YP_004245503.1| - 6.8 7.1 19.4 5.8 7.4 4.2 2.0 2 0 0 2 2 2 0 AAA domain Swi5 PF07061.11 gi|325969311|ref|YP_004245503.1| - 7.7 6.7 11.5 47 4.2 2.9 3.0 1 1 1 2 2 2 0 Swi5 CENP-Q PF13094.6 gi|325969311|ref|YP_004245503.1| - 8.4 6.6 12.8 81 3.4 12.8 2.1 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit AHD PF17793.1 gi|325969311|ref|YP_004245503.1| - 8.8 6.2 11.3 15 5.4 2.0 3.2 2 1 0 2 2 2 0 ANC1 homology domain (AHD) Mod_r PF07200.13 gi|325969311|ref|YP_004245503.1| - 9.2 6.4 15.5 2.1 8.5 5.1 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein SlyX PF04102.12 gi|325969311|ref|YP_004245503.1| - 9.7 6.9 10.3 5.5 7.7 1.8 2.5 2 0 0 2 2 2 0 SlyX DUF3194 PF11419.8 gi|325969312|ref|YP_004245504.1| - 2e-06 28.1 0.2 9.3e-06 25.9 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3194) DHH PF01368.20 gi|325969313|ref|YP_004245505.1| - 8.6e-10 38.8 0.2 1.5e-09 38.0 0.2 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|325969313|ref|YP_004245505.1| - 2.9e-07 31.0 0.0 5e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain Peptidase_S41 PF03572.18 gi|325969313|ref|YP_004245505.1| - 0.034 13.7 0.0 0.085 12.4 0.0 1.6 1 1 0 1 1 1 0 Peptidase family S41 T2SSE PF00437.20 gi|325969315|ref|YP_004245507.1| - 5.7e-50 169.9 0.0 7.7e-50 169.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|325969315|ref|YP_004245507.1| - 0.0032 18.0 0.0 0.0082 16.7 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|325969315|ref|YP_004245507.1| - 0.0054 17.1 0.0 0.01 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|325969315|ref|YP_004245507.1| - 0.0069 16.1 0.0 0.021 14.6 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain PIF1 PF05970.14 gi|325969315|ref|YP_004245507.1| - 0.024 13.8 0.0 0.053 12.7 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase DUF87 PF01935.17 gi|325969315|ref|YP_004245507.1| - 0.035 14.2 0.2 0.69 10.0 0.0 2.6 3 0 0 3 3 3 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|325969315|ref|YP_004245507.1| - 0.12 12.9 0.9 0.26 11.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|325969315|ref|YP_004245507.1| - 0.15 12.1 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 Dynamin family IFN-gamma PF00714.17 gi|325969316|ref|YP_004245508.1| - 0.035 13.9 0.8 0.047 13.5 0.6 1.4 1 1 0 1 1 1 0 Interferon gamma KIP1 PF07765.12 gi|325969316|ref|YP_004245508.1| - 0.092 12.9 1.3 0.24 11.5 0.2 1.9 1 1 1 2 2 2 0 KIP1-like protein IDO PF01231.18 gi|325969316|ref|YP_004245508.1| - 0.17 10.6 0.1 0.17 10.6 0.1 1.0 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase SNAP-25 PF00835.19 gi|325969317|ref|YP_004245509.1| - 0.093 13.0 0.2 9.6 6.6 0.0 2.3 2 0 0 2 2 2 0 SNAP-25 family ThiD2 PF17792.1 gi|325969319|ref|YP_004245511.1| - 0.043 14.3 0.0 0.094 13.2 0.0 1.6 2 0 0 2 2 2 0 ThiD2 family DUF5344 PF17279.2 gi|325969319|ref|YP_004245511.1| - 0.15 12.7 1.4 0.27 11.8 0.4 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5344) PMBR PF09373.10 gi|325969319|ref|YP_004245511.1| - 0.76 10.1 5.9 1 9.7 0.3 3.0 3 0 0 3 3 3 0 Pseudomurein-binding repeat PurL_C PF16904.5 gi|325969321|ref|YP_004245513.1| - 0.046 14.0 0.4 0.2 12.0 0.1 1.9 1 1 1 2 2 2 0 Phosphoribosylformylglycinamidine synthase II C-terminus BORCS7 PF16088.5 gi|325969321|ref|YP_004245513.1| - 0.16 12.2 0.5 14 6.1 0.0 2.1 2 0 0 2 2 2 0 BLOC-1-related complex sub-unit 7 NPV_P10 PF05531.12 gi|325969321|ref|YP_004245513.1| - 0.47 11.0 3.1 13 6.3 0.1 2.3 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein VAPB_antitox PF02697.14 gi|325969322|ref|YP_004245514.1| - 0.00069 20.3 2.9 0.00096 19.9 2.9 1.2 1 0 0 1 1 1 1 Putative antitoxin RHH_3 PF12651.7 gi|325969322|ref|YP_004245514.1| - 0.028 14.4 0.5 0.66 10.0 0.0 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix domain Helicase_RecD PF05127.14 gi|325969323|ref|YP_004245515.1| - 1.2e-57 194.6 0.0 1.9e-57 194.0 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|325969323|ref|YP_004245515.1| - 1.9e-43 148.5 0.0 4e-29 101.6 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|325969323|ref|YP_004245515.1| - 2.4e-27 94.7 0.0 1e-26 92.7 0.0 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|325969323|ref|YP_004245515.1| - 1.5e-06 28.5 0.0 3.2e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|325969323|ref|YP_004245515.1| - 0.00025 21.4 0.0 0.00081 19.8 0.0 1.9 2 0 0 2 2 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|325969323|ref|YP_004245515.1| - 0.0048 16.8 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain tRNA_bind_2 PF13725.6 gi|325969323|ref|YP_004245515.1| - 0.006 16.3 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_16 PF13191.6 gi|325969323|ref|YP_004245515.1| - 0.046 14.1 0.0 0.17 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|325969323|ref|YP_004245515.1| - 0.078 12.7 0.0 0.32 10.7 0.0 1.9 1 1 1 2 2 2 0 AAA domain FR47 PF08445.10 gi|325969323|ref|YP_004245515.1| - 0.097 12.6 0.1 0.46 10.5 0.0 2.1 2 0 0 2 2 2 0 FR47-like protein TniB PF05621.11 gi|325969323|ref|YP_004245515.1| - 0.11 12.0 0.0 0.29 10.5 0.0 1.7 1 0 0 1 1 1 0 Bacterial TniB protein Acetyltransf_9 PF13527.7 gi|325969323|ref|YP_004245515.1| - 0.11 12.5 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Proton_antipo_M PF00361.20 gi|325969325|ref|YP_004245517.1| - 2.1e-30 106.0 34.5 2.1e-30 106.0 34.5 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|325969326|ref|YP_004245518.1| - 3.5e-27 95.4 39.6 3.1e-25 89.0 26.1 3.8 3 1 0 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|325969326|ref|YP_004245518.1| - 0.00034 20.6 3.5 0.00034 20.6 3.5 3.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2109 PF09882.9 gi|325969326|ref|YP_004245518.1| - 0.014 15.4 0.3 0.014 15.4 0.3 3.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2109) LUD_dom PF02589.15 gi|325969327|ref|YP_004245519.1| - 3.6e-46 157.3 0.1 4.8e-46 156.9 0.1 1.2 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|325969327|ref|YP_004245519.1| - 8.8e-10 38.9 0.7 1.7e-09 38.0 0.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325969327|ref|YP_004245519.1| - 9e-09 35.7 3.0 5.4e-08 33.3 3.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325969327|ref|YP_004245519.1| - 1.3e-07 32.1 3.9 2.3e-07 31.3 3.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325969327|ref|YP_004245519.1| - 1.4e-05 25.1 8.1 0.018 15.2 1.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325969327|ref|YP_004245519.1| - 1.7e-05 24.6 6.4 0.0026 17.7 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|325969327|ref|YP_004245519.1| - 4.9e-05 23.0 8.0 0.0011 18.7 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325969327|ref|YP_004245519.1| - 7.6e-05 22.8 3.0 0.00039 20.5 3.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325969327|ref|YP_004245519.1| - 0.0075 16.3 8.0 0.021 14.9 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.6 gi|325969327|ref|YP_004245519.1| - 0.008 15.9 1.1 0.095 12.5 0.0 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|325969327|ref|YP_004245519.1| - 0.009 16.9 7.0 0.044 14.7 7.0 2.1 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|325969327|ref|YP_004245519.1| - 0.014 15.6 1.0 0.78 10.0 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325969327|ref|YP_004245519.1| - 0.051 13.7 4.6 0.39 10.9 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|325969327|ref|YP_004245519.1| - 0.1 13.4 4.9 0.33 11.8 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325969327|ref|YP_004245519.1| - 0.18 12.4 6.5 0.44 11.2 1.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|325969327|ref|YP_004245519.1| - 1.2 9.7 5.4 1.7 9.2 0.6 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I AIRS_C PF02769.22 gi|325969328|ref|YP_004245520.1| - 9.3e-21 74.6 0.0 1.4e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|325969328|ref|YP_004245520.1| - 4.6e-13 49.6 0.1 1e-12 48.5 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PALP PF00291.25 gi|325969329|ref|YP_004245521.1| - 6.2e-89 298.3 4.0 8.1e-89 297.9 4.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|325969329|ref|YP_004245521.1| - 2.4e-08 33.6 0.0 8.5e-08 31.8 0.0 2.0 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|325969329|ref|YP_004245521.1| - 0.0071 16.3 0.1 0.024 14.6 0.1 1.9 1 1 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|325969329|ref|YP_004245521.1| - 0.01 16.4 0.0 0.046 14.3 0.0 2.1 1 1 0 1 1 1 0 ACT domain M20_dimer PF07687.14 gi|325969329|ref|YP_004245521.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Peptidase dimerisation domain Lactamase_B_3 PF13483.6 gi|325969329|ref|YP_004245521.1| - 0.16 11.8 0.0 0.42 10.5 0.0 1.7 2 0 0 2 2 2 0 Beta-lactamase superfamily domain Ribonuc_L-PSP PF01042.21 gi|325969330|ref|YP_004245522.1| - 2e-40 137.6 0.0 2.2e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Exo5 PF09810.9 gi|325969331|ref|YP_004245523.1| - 1.9e-08 34.2 1.7 0.01 15.3 0.0 3.0 2 1 1 3 3 3 3 Exonuclease V - a 5' deoxyribonuclease Cas_Cas4 PF01930.17 gi|325969331|ref|YP_004245523.1| - 0.00039 20.6 3.3 0.00039 20.5 0.3 2.3 1 1 1 2 2 2 1 Domain of unknown function DUF83 HSDR_N PF04313.14 gi|325969331|ref|YP_004245523.1| - 0.0009 19.2 0.1 0.0015 18.5 0.1 1.4 1 1 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) RC-P840_PscD PF10657.9 gi|325969331|ref|YP_004245523.1| - 0.17 12.0 1.6 0.29 11.2 0.3 1.9 2 0 0 2 2 2 0 Photosystem P840 reaction centre protein PscD MoeA_N PF03453.17 gi|325969333|ref|YP_004245525.1| - 1.9e-39 134.9 0.1 3.2e-39 134.2 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|325969333|ref|YP_004245525.1| - 2.4e-26 92.1 0.0 4e-26 91.4 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|325969333|ref|YP_004245525.1| - 3.2e-15 56.1 0.3 1.1e-14 54.4 0.1 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) NurA PF09376.10 gi|325969335|ref|YP_004245527.1| - 9.8e-20 71.3 7.5 5.5e-19 68.8 7.5 2.2 1 1 0 1 1 1 1 NurA domain Baculo_11_kDa PF06143.11 gi|325969336|ref|YP_004245528.1| - 0.028 14.0 1.4 0.053 13.1 1.4 1.4 1 0 0 1 1 1 0 Baculovirus 11 kDa family Thioredoxin_3 PF13192.6 gi|325969337|ref|YP_004245529.1| - 4.5e-10 39.4 0.1 2.3e-09 37.2 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|325969337|ref|YP_004245529.1| - 8.7e-08 32.3 0.1 1.1e-06 28.7 0.0 2.6 3 0 0 3 3 3 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|325969337|ref|YP_004245529.1| - 0.0015 18.7 0.1 0.036 14.2 0.0 2.7 3 1 0 3 3 3 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|325969337|ref|YP_004245529.1| - 0.12 12.8 0.2 2.9 8.4 0.0 2.8 2 1 0 2 2 2 0 Thioredoxin-like domain AAA_assoc PF14363.6 gi|325969337|ref|YP_004245529.1| - 0.14 12.6 1.2 0.42 11.0 0.2 2.2 2 0 0 2 2 2 0 Domain associated at C-terminal with AAA Radical_SAM PF04055.21 gi|325969338|ref|YP_004245530.1| - 1.1e-12 48.7 0.0 2.9e-12 47.3 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily HHH_3 PF12836.7 gi|325969338|ref|YP_004245530.1| - 6.3e-05 23.1 0.1 0.00019 21.6 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif MarC PF01914.17 gi|325969340|ref|YP_004245532.1| - 2.9e-33 115.0 16.7 3.3e-33 114.8 16.7 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein DUF3810 PF12725.7 gi|325969340|ref|YP_004245532.1| - 0.95 8.7 4.8 0.21 10.9 1.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) DUF2070 PF09843.9 gi|325969340|ref|YP_004245532.1| - 2.7 6.2 8.2 2.8 6.1 7.4 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Meth_synt_2 PF01717.18 gi|325969341|ref|YP_004245533.1| - 8.3e-31 107.4 0.0 8.6e-18 64.7 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|325969341|ref|YP_004245533.1| - 1.5e-07 31.3 0.0 0.0077 15.8 0.0 3.1 3 0 0 3 3 3 3 Cobalamin-independent synthase, N-terminal domain tRNA-synt_2 PF00152.20 gi|325969342|ref|YP_004245534.1| - 2e-57 194.7 0.0 2.3e-57 194.4 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) GATase_3 PF07685.14 gi|325969343|ref|YP_004245535.1| - 1.9e-36 125.6 0.0 3.2e-36 124.8 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|325969343|ref|YP_004245535.1| - 1.8e-19 70.0 0.0 3e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|325969343|ref|YP_004245535.1| - 3e-15 56.6 0.0 2.4e-14 53.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain MobB PF03205.14 gi|325969343|ref|YP_004245535.1| - 0.0015 18.4 0.0 0.0068 16.3 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.28 gi|325969343|ref|YP_004245535.1| - 0.23 11.2 0.0 0.45 10.3 0.0 1.5 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Mit_proteolip PF08039.11 gi|325969344|ref|YP_004245536.1| - 0.036 14.5 0.1 0.076 13.5 0.1 1.5 1 0 0 1 1 1 0 Mitochondrial proteolipid HTH_45 PF14947.6 gi|325969345|ref|YP_004245537.1| - 1.4e-07 31.4 0.0 2e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Sulfolobus_pRN PF05584.11 gi|325969345|ref|YP_004245537.1| - 0.0017 18.3 0.2 0.0035 17.3 0.1 1.6 1 1 1 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_Crp_2 PF13545.6 gi|325969345|ref|YP_004245537.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|325969345|ref|YP_004245537.1| - 0.051 13.5 0.0 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF4382 PF14321.6 gi|325969346|ref|YP_004245538.1| - 2.5e-22 79.6 0.1 3.1e-22 79.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) AA_permease_2 PF13520.6 gi|325969347|ref|YP_004245539.1| - 2.8e-42 145.0 49.4 3.8e-42 144.6 49.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|325969347|ref|YP_004245539.1| - 1.5e-30 106.3 49.9 3.7e-30 104.9 49.9 1.6 1 1 0 1 1 1 1 Amino acid permease DUF3493 PF11998.8 gi|325969347|ref|YP_004245539.1| - 0.097 12.9 2.2 0.31 11.2 0.1 2.7 2 0 0 2 2 2 0 Low psii accumulation1 / Rep27 PfkB PF00294.24 gi|325969348|ref|YP_004245540.1| - 1.9e-52 178.4 0.0 2.2e-52 178.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|325969348|ref|YP_004245540.1| - 0.00087 18.7 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase AMP-binding PF00501.28 gi|325969349|ref|YP_004245541.1| - 1.4e-81 274.3 0.0 1.7e-81 274.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325969349|ref|YP_004245541.1| - 1.6e-17 64.3 0.0 3.6e-17 63.1 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Ion_trans_2 PF07885.16 gi|325969350|ref|YP_004245542.1| - 3.9e-16 58.8 6.8 8.8e-16 57.6 6.8 1.6 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 gi|325969350|ref|YP_004245542.1| - 2.4e-10 40.7 0.1 6.2e-10 39.4 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain Ion_trans PF00520.31 gi|325969350|ref|YP_004245542.1| - 2.6e-09 36.7 7.3 4.6e-09 35.9 7.3 1.3 1 0 0 1 1 1 1 Ion transport protein Castor_Poll_mid PF06241.12 gi|325969350|ref|YP_004245542.1| - 2.1e-05 24.4 2.0 5.6e-05 23.1 0.2 2.5 3 0 0 3 3 3 1 Castor and Pollux, part of voltage-gated ion channel TrkA_C PF02080.21 gi|325969350|ref|YP_004245542.1| - 0.00031 20.5 0.5 0.00087 19.1 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain Lig_chan PF00060.26 gi|325969350|ref|YP_004245542.1| - 0.013 15.3 1.9 0.022 14.6 1.9 1.3 1 0 0 1 1 1 0 Ligand-gated ion channel BK_channel_a PF03493.18 gi|325969350|ref|YP_004245542.1| - 0.021 15.0 0.3 1.2 9.4 0.1 2.5 1 1 0 2 2 2 0 Calcium-activated BK potassium channel alpha subunit DUF3852 PF12963.7 gi|325969350|ref|YP_004245542.1| - 0.03 14.7 4.4 0.05 13.9 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3852) DUF2207 PF09972.9 gi|325969350|ref|YP_004245542.1| - 0.38 9.5 3.3 5.6 5.6 1.6 2.2 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) GDP_Man_Dehyd PF16363.5 gi|325969351|ref|YP_004245543.1| - 1.4e-52 179.2 0.0 1.7e-52 178.9 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|325969351|ref|YP_004245543.1| - 4.4e-52 177.0 0.0 5.5e-52 176.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|325969351|ref|YP_004245543.1| - 4.2e-17 62.0 0.0 5.8e-17 61.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|325969351|ref|YP_004245543.1| - 8e-16 58.0 0.0 7.4e-15 54.9 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|325969351|ref|YP_004245543.1| - 1.5e-13 50.5 0.0 1.9e-13 50.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|325969351|ref|YP_004245543.1| - 2.9e-10 39.8 0.8 2.7e-07 30.0 0.7 2.5 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|325969351|ref|YP_004245543.1| - 1.5e-06 28.2 0.0 2.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|325969351|ref|YP_004245543.1| - 0.00047 19.7 0.0 0.017 14.6 0.0 2.7 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.13 gi|325969351|ref|YP_004245543.1| - 0.0013 18.3 0.0 0.012 15.2 0.0 2.1 2 0 0 2 2 2 1 NmrA-like family UPF0146 PF03686.13 gi|325969351|ref|YP_004245543.1| - 0.0046 16.8 0.0 0.009 15.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) KR PF08659.10 gi|325969351|ref|YP_004245543.1| - 0.072 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 KR domain Ldh_1_N PF00056.23 gi|325969351|ref|YP_004245543.1| - 0.17 12.0 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain ThiF PF00899.21 gi|325969351|ref|YP_004245543.1| - 0.23 10.8 0.2 18 4.6 0.0 2.2 2 0 0 2 2 2 0 ThiF family Frag1 PF10277.9 gi|325969352|ref|YP_004245544.1| - 0.0064 16.0 4.2 0.0079 15.7 4.2 1.2 1 0 0 1 1 1 1 Frag1/DRAM/Sfk1 family DtxR PF18357.1 gi|325969352|ref|YP_004245544.1| - 0.091 12.4 1.8 0.16 11.6 1.8 1.4 1 0 0 1 1 1 0 Diphteria toxin repressor SH3 domain GerA PF03323.13 gi|325969352|ref|YP_004245544.1| - 0.71 8.3 8.6 1.1 7.6 8.6 1.3 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein CbiX PF01903.17 gi|325969354|ref|YP_004245546.1| - 0.058 13.7 0.0 5.3 7.4 0.0 2.3 2 0 0 2 2 2 0 CbiX CobD_Cbib PF03186.13 gi|325969355|ref|YP_004245547.1| - 1.2e-79 267.4 1.5 1.2e-79 267.4 1.5 1.3 1 1 0 1 1 1 1 CobD/Cbib protein AsnC_trans_reg PF01037.21 gi|325969356|ref|YP_004245548.1| - 2.7e-09 36.9 0.2 5e-09 36.0 0.2 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_Crp_2 PF13545.6 gi|325969356|ref|YP_004245548.1| - 1.3e-07 31.5 0.2 2.7e-07 30.4 0.0 1.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|325969356|ref|YP_004245548.1| - 5.5e-07 29.5 0.6 4.4e-06 26.6 0.1 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|325969356|ref|YP_004245548.1| - 1e-06 28.5 0.5 5.9e-06 26.0 0.2 2.5 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|325969356|ref|YP_004245548.1| - 1.6e-06 27.9 0.6 6.4e-06 26.0 0.2 2.2 2 1 1 3 3 3 1 MarR family HTH_24 PF13412.6 gi|325969356|ref|YP_004245548.1| - 1.9e-05 24.1 0.1 0.00014 21.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|325969356|ref|YP_004245548.1| - 0.00067 19.3 0.1 0.0014 18.3 0.1 1.5 1 1 0 1 1 1 1 Replication protein C N-terminal domain LexA_DNA_bind PF01726.16 gi|325969356|ref|YP_004245548.1| - 0.002 17.9 0.7 0.0059 16.4 0.7 1.8 1 1 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.12 gi|325969356|ref|YP_004245548.1| - 0.0025 17.7 3.0 0.011 15.6 0.4 3.1 3 1 0 3 3 3 1 HTH domain MarR PF01047.22 gi|325969356|ref|YP_004245548.1| - 0.0066 16.4 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|325969356|ref|YP_004245548.1| - 0.0075 16.2 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|325969356|ref|YP_004245548.1| - 0.0084 15.9 1.5 0.5 10.2 0.0 2.8 3 0 0 3 3 3 1 HTH DNA binding domain HTH_34 PF13601.6 gi|325969356|ref|YP_004245548.1| - 0.016 15.3 0.0 0.04 14.1 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_8 PF02954.19 gi|325969356|ref|YP_004245548.1| - 0.023 14.5 1.3 0.056 13.2 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_28 PF13518.6 gi|325969356|ref|YP_004245548.1| - 0.053 13.6 0.0 0.12 12.6 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|325969356|ref|YP_004245548.1| - 0.11 12.4 3.2 0.63 10.0 0.2 3.2 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB DUF357 PF04010.13 gi|325969357|ref|YP_004245549.1| - 2.1e-17 63.0 1.0 3.4e-17 62.3 1.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|325969357|ref|YP_004245549.1| - 3.1e-09 37.1 0.0 7.4e-09 35.9 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase-like tRNA-synt_2b PF00587.25 gi|325969359|ref|YP_004245551.1| - 7.8e-29 100.9 0.0 1.3e-28 100.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|325969359|ref|YP_004245551.1| - 1.1e-20 73.6 0.1 2.3e-20 72.5 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|325969359|ref|YP_004245551.1| - 1.6e-10 41.0 0.0 4e-10 39.7 0.0 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal RIO1 PF01163.22 gi|325969361|ref|YP_004245553.1| - 5.5e-05 22.9 0.0 7.4e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Choline_kinase PF01633.20 gi|325969361|ref|YP_004245553.1| - 0.0066 16.1 0.0 0.5 9.9 0.0 2.2 1 1 1 2 2 2 2 Choline/ethanolamine kinase FTA2 PF13095.6 gi|325969361|ref|YP_004245553.1| - 0.024 14.3 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Kinetochore Sim4 complex subunit FTA2 HTH_43 PF09904.9 gi|325969361|ref|YP_004245553.1| - 0.046 13.6 0.0 0.33 10.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix PUA PF01472.20 gi|325969362|ref|YP_004245554.1| - 5.9e-21 74.2 0.1 8.6e-21 73.7 0.1 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|325969362|ref|YP_004245554.1| - 1.5e-07 31.6 0.1 4.4e-07 30.1 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|325969362|ref|YP_004245554.1| - 0.0046 17.2 0.1 0.0069 16.6 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain tRNA_bind PF01588.20 gi|325969363|ref|YP_004245555.1| - 2.2e-26 91.8 0.1 2.5e-26 91.6 0.1 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Peptidase_M16 PF00675.20 gi|325969364|ref|YP_004245556.1| - 3.4e-19 69.3 0.0 1.3e-18 67.4 0.0 1.9 2 0 0 2 2 2 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|325969364|ref|YP_004245556.1| - 1.1e-11 45.1 0.1 2.8e-11 43.8 0.0 1.7 2 0 0 2 2 2 1 Peptidase M16 inactive domain Telomere_reg-2 PF10193.9 gi|325969364|ref|YP_004245556.1| - 0.14 12.6 0.1 0.68 10.4 0.0 2.0 2 0 0 2 2 2 0 Telomere length regulation protein SIR2 PF02146.17 gi|325969365|ref|YP_004245557.1| - 1e-50 172.1 0.0 1.3e-50 171.8 0.0 1.1 1 0 0 1 1 1 1 Sir2 family ADK_lid PF05191.14 gi|325969365|ref|YP_004245557.1| - 0.00014 21.7 0.4 0.00024 21.0 0.4 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid TPP_enzyme_M PF00205.22 gi|325969365|ref|YP_004245557.1| - 0.0044 16.7 0.1 0.47 10.2 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain Glycos_transf_1 PF00534.20 gi|325969365|ref|YP_004245557.1| - 0.034 13.7 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|325969366|ref|YP_004245558.1| - 7.8e-11 42.3 0.3 9.8e-11 41.9 0.3 1.1 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|325969366|ref|YP_004245558.1| - 2.9e-07 31.1 0.0 5.2e-07 30.2 0.0 1.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|325969366|ref|YP_004245558.1| - 3.1e-05 23.8 0.0 0.071 12.8 0.1 2.1 1 1 1 2 2 2 2 Starch synthase catalytic domain HrcA_DNA-bdg PF03444.15 gi|325969367|ref|YP_004245559.1| - 3e-05 23.6 0.7 0.019 14.6 0.1 2.1 1 1 1 2 2 2 2 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|325969367|ref|YP_004245559.1| - 0.0021 18.3 0.2 0.0028 18.0 0.2 1.2 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|325969367|ref|YP_004245559.1| - 0.0091 15.9 0.1 0.012 15.5 0.1 1.1 1 0 0 1 1 1 1 MarR family RPA_C PF08784.11 gi|325969367|ref|YP_004245559.1| - 0.015 15.9 0.1 0.018 15.7 0.1 1.1 1 0 0 1 1 1 0 Replication protein A C terminal AAA_assoc_C PF09821.9 gi|325969367|ref|YP_004245559.1| - 0.034 14.7 0.0 0.056 14.0 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain HTH_27 PF13463.6 gi|325969367|ref|YP_004245559.1| - 0.065 13.7 0.2 0.082 13.4 0.2 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain TRM PF02005.16 gi|325969367|ref|YP_004245559.1| - 0.065 12.4 0.1 0.069 12.3 0.1 1.0 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase HTH_36 PF13730.6 gi|325969367|ref|YP_004245559.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|325969367|ref|YP_004245559.1| - 0.11 12.4 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3659 PF12396.8 gi|325969367|ref|YP_004245559.1| - 0.14 12.1 0.1 0.18 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) Glyco_hydro_57 PF03065.15 gi|325969368|ref|YP_004245560.1| - 3.2e-36 125.2 2.1 3.1e-29 102.2 0.0 2.3 1 1 1 2 2 2 2 Glycosyl hydrolase family 57 Amidohydro_1 PF01979.20 gi|325969369|ref|YP_004245561.1| - 5.8e-11 42.3 0.0 8.2e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|325969369|ref|YP_004245561.1| - 0.22 10.9 0.2 5.1 6.4 0.2 2.3 3 0 0 3 3 3 0 Amidohydrolase family Glyco_transf_4 PF13439.6 gi|325969370|ref|YP_004245562.1| - 0.03 14.3 0.0 0.048 13.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Pyr_redox_2 PF07992.14 gi|325969370|ref|YP_004245562.1| - 0.048 12.9 0.0 0.067 12.4 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase VWA_CoxE PF05762.14 gi|325969371|ref|YP_004245563.1| - 0.0017 17.8 0.5 2.4 7.5 0.0 2.9 3 0 0 3 3 3 2 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|325969371|ref|YP_004245563.1| - 0.014 16.0 0.9 0.045 14.4 0.2 2.3 2 1 0 2 2 2 0 von Willebrand factor type A domain RAI16-like PF10257.9 gi|325969371|ref|YP_004245563.1| - 0.084 11.7 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein PTPS PF01242.19 gi|325969372|ref|YP_004245564.1| - 1.8e-12 47.3 0.0 2.2e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase TP_methylase PF00590.20 gi|325969373|ref|YP_004245565.1| - 3.3e-41 141.6 0.1 3.9e-41 141.3 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_M54 PF07998.11 gi|325969374|ref|YP_004245566.1| - 1.3e-27 97.1 0.0 1.5e-27 96.9 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|325969374|ref|YP_004245566.1| - 9.2e-05 22.3 0.0 0.00017 21.5 0.0 1.3 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 gi|325969374|ref|YP_004245566.1| - 0.00056 20.4 0.0 0.00065 20.2 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|325969374|ref|YP_004245566.1| - 0.0034 17.1 0.0 0.031 13.9 0.0 1.9 1 1 1 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|325969374|ref|YP_004245566.1| - 0.011 14.3 0.2 0.017 13.8 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Reprolysin_5 PF13688.6 gi|325969374|ref|YP_004245566.1| - 0.023 14.9 0.0 0.026 14.7 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M66 PF10462.9 gi|325969374|ref|YP_004245566.1| - 0.035 13.1 0.0 0.047 12.6 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 HEPN_RnaseLS PF18869.1 gi|325969374|ref|YP_004245566.1| - 0.15 12.1 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 RnaseLS-like HEPN Peptidase_M90 PF06167.12 gi|325969374|ref|YP_004245566.1| - 0.18 11.4 0.0 0.25 10.9 0.0 1.4 1 1 0 1 1 1 0 Glucose-regulated metallo-peptidase M90 Reprolysin_2 PF13574.6 gi|325969374|ref|YP_004245566.1| - 0.18 11.6 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like N6_N4_Mtase PF01555.18 gi|325969375|ref|YP_004245567.1| - 8.5e-06 25.6 0.2 4.4e-05 23.3 0.0 2.2 2 0 0 2 2 2 1 DNA methylase N6_Mtase PF02384.16 gi|325969375|ref|YP_004245567.1| - 2.5e-05 23.7 0.0 5.9e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|325969375|ref|YP_004245567.1| - 0.0001 22.1 0.0 0.00018 21.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|325969375|ref|YP_004245567.1| - 0.00058 19.5 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|325969375|ref|YP_004245567.1| - 0.0048 16.5 0.0 0.0085 15.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.16 gi|325969375|ref|YP_004245567.1| - 0.03 14.1 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein MethyltransfD12 PF02086.15 gi|325969375|ref|YP_004245567.1| - 0.046 13.4 0.2 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase PliI PF16743.5 gi|325969375|ref|YP_004245567.1| - 0.061 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Periplasmic lysozyme inhibitor of I-type lysozyme Methyltransf_25 PF13649.6 gi|325969375|ref|YP_004245567.1| - 0.083 13.6 0.0 0.16 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF87 PF01935.17 gi|325969376|ref|YP_004245568.1| - 1.1e-15 58.3 0.1 2.9e-15 57.0 0.1 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|325969376|ref|YP_004245568.1| - 2e-12 46.7 0.0 4.6e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|325969376|ref|YP_004245568.1| - 3.4e-07 29.5 0.0 5.7e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|325969376|ref|YP_004245568.1| - 2.8e-06 27.7 1.9 0.013 15.8 0.0 2.9 3 0 0 3 3 3 2 AAA domain Zot PF05707.12 gi|325969376|ref|YP_004245568.1| - 6.9e-06 25.8 0.1 0.00044 19.9 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.18 gi|325969376|ref|YP_004245568.1| - 1.5e-05 24.5 0.2 8.2e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family ResIII PF04851.15 gi|325969376|ref|YP_004245568.1| - 7.2e-05 22.8 0.0 0.03 14.3 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|325969376|ref|YP_004245568.1| - 0.00028 20.7 0.1 0.6 9.9 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase DUF853 PF05872.12 gi|325969376|ref|YP_004245568.1| - 0.00036 19.3 0.1 0.39 9.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.6 gi|325969376|ref|YP_004245568.1| - 0.0026 18.2 0.2 0.0089 16.4 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain PhoH PF02562.16 gi|325969376|ref|YP_004245568.1| - 0.0033 16.9 0.1 0.057 12.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_14 PF13173.6 gi|325969376|ref|YP_004245568.1| - 0.0035 17.4 0.4 0.27 11.3 0.1 2.7 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|325969376|ref|YP_004245568.1| - 0.0047 17.5 0.0 0.013 16.1 0.0 1.7 1 0 0 1 1 1 1 ABC transporter CLP1_P PF16575.5 gi|325969376|ref|YP_004245568.1| - 0.0071 16.2 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_19 PF13245.6 gi|325969376|ref|YP_004245568.1| - 0.009 16.4 0.2 0.058 13.7 0.6 2.3 2 1 0 2 2 1 1 AAA domain AAA PF00004.29 gi|325969376|ref|YP_004245568.1| - 0.0092 16.4 1.3 1.1 9.7 0.1 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|325969376|ref|YP_004245568.1| - 0.0094 15.0 0.0 0.017 14.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NACHT PF05729.12 gi|325969376|ref|YP_004245568.1| - 0.011 15.7 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain T4SS-DNA_transf PF02534.14 gi|325969376|ref|YP_004245568.1| - 0.013 14.3 0.0 0.023 13.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer ATP_bind_1 PF03029.17 gi|325969376|ref|YP_004245568.1| - 0.017 14.9 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATP-synt_ab PF00006.25 gi|325969376|ref|YP_004245568.1| - 0.023 14.4 0.0 0.054 13.1 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|325969376|ref|YP_004245568.1| - 0.023 14.4 0.1 0.053 13.3 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|325969376|ref|YP_004245568.1| - 0.034 13.9 0.1 0.29 10.8 0.0 2.3 3 0 0 3 3 3 0 AAA domain PduV-EutP PF10662.9 gi|325969376|ref|YP_004245568.1| - 0.035 13.8 0.1 0.1 12.3 0.1 1.8 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|325969376|ref|YP_004245568.1| - 0.045 13.6 0.6 1.4 8.8 0.2 2.8 3 0 0 3 3 2 0 NTPase ATPase_2 PF01637.18 gi|325969376|ref|YP_004245568.1| - 0.051 13.5 0.0 0.17 11.8 0.0 1.8 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Pox_A32 PF04665.12 gi|325969376|ref|YP_004245568.1| - 0.086 12.3 2.1 0.94 8.9 0.2 2.5 2 0 0 2 2 2 0 Poxvirus A32 protein cobW PF02492.19 gi|325969376|ref|YP_004245568.1| - 0.088 12.4 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.6 gi|325969376|ref|YP_004245568.1| - 0.1 13.1 0.2 1.2 9.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|325969376|ref|YP_004245568.1| - 0.12 11.9 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|325969376|ref|YP_004245568.1| - 0.12 11.6 0.1 11 5.1 0.0 2.5 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) MobB PF03205.14 gi|325969376|ref|YP_004245568.1| - 0.13 12.2 0.5 0.43 10.5 0.2 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|325969376|ref|YP_004245568.1| - 0.13 12.6 0.0 0.42 11.0 0.0 1.8 2 0 0 2 2 1 0 RNA helicase Viral_helicase1 PF01443.18 gi|325969376|ref|YP_004245568.1| - 0.19 11.4 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF87 PF01935.17 gi|325969377|ref|YP_004245569.1| - 1.7e-07 31.6 0.0 8e-07 29.4 0.0 2.3 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|325969377|ref|YP_004245569.1| - 6.6e-06 26.5 0.1 0.019 15.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|325969377|ref|YP_004245569.1| - 0.00047 20.7 0.1 0.0012 19.4 0.0 1.6 2 0 0 2 2 1 1 AAA domain TrwB_AAD_bind PF10412.9 gi|325969377|ref|YP_004245569.1| - 0.00052 19.0 0.4 0.0037 16.2 0.0 2.3 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|325969377|ref|YP_004245569.1| - 0.00079 19.5 0.0 0.044 13.8 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|325969377|ref|YP_004245569.1| - 0.00096 19.6 0.0 0.011 16.1 0.0 2.9 4 1 0 4 4 2 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|325969377|ref|YP_004245569.1| - 0.0021 17.5 0.0 0.0036 16.7 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family PhoH PF02562.16 gi|325969377|ref|YP_004245569.1| - 0.0021 17.6 0.0 0.0082 15.6 0.0 2.0 2 0 0 2 2 2 1 PhoH-like protein RuvB_N PF05496.12 gi|325969377|ref|YP_004245569.1| - 0.0024 17.6 0.3 0.0092 15.7 0.1 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_10 PF12846.7 gi|325969377|ref|YP_004245569.1| - 0.0057 15.6 0.0 0.011 14.7 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain ABC_tran PF00005.27 gi|325969377|ref|YP_004245569.1| - 0.0072 16.8 0.8 0.014 15.9 0.1 1.8 2 0 0 2 2 1 1 ABC transporter AAA_16 PF13191.6 gi|325969377|ref|YP_004245569.1| - 0.0077 16.6 0.0 0.018 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|325969377|ref|YP_004245569.1| - 0.012 15.4 0.0 0.03 14.1 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|325969377|ref|YP_004245569.1| - 0.016 15.2 0.0 0.061 13.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|325969377|ref|YP_004245569.1| - 0.017 14.7 0.3 0.063 12.9 0.1 1.9 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.22 gi|325969377|ref|YP_004245569.1| - 0.017 14.7 0.1 0.05 13.2 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|325969377|ref|YP_004245569.1| - 0.018 15.2 0.2 0.7 10.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|325969377|ref|YP_004245569.1| - 0.023 14.4 0.0 0.056 13.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|325969377|ref|YP_004245569.1| - 0.025 14.6 0.0 0.065 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DEAD PF00270.29 gi|325969377|ref|YP_004245569.1| - 0.03 14.1 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|325969377|ref|YP_004245569.1| - 0.036 13.8 0.2 0.43 10.3 0.2 2.2 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|325969377|ref|YP_004245569.1| - 0.088 12.9 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MapZ_C2 PF18708.1 gi|325969377|ref|YP_004245569.1| - 0.1 12.9 0.5 13 6.1 0.0 2.6 2 0 0 2 2 2 0 MapZ extracellular C-terminal domain 2 T2SSE PF00437.20 gi|325969377|ref|YP_004245569.1| - 0.13 11.3 0.0 0.28 10.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|325969377|ref|YP_004245569.1| - 0.15 11.2 0.0 2.4 7.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|325969377|ref|YP_004245569.1| - 0.2 12.0 0.4 1.5 9.1 0.4 2.4 1 1 0 1 1 1 0 AAA domain AdoMet_dc PF02675.15 gi|325969378|ref|YP_004245570.1| - 1.7e-34 118.2 0.2 2e-34 118.0 0.2 1.1 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SIS PF01380.22 gi|325969379|ref|YP_004245571.1| - 5.6e-18 65.0 0.0 9.5e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|325969379|ref|YP_004245571.1| - 2.5e-10 40.5 2.8 3.1e-06 27.3 1.1 2.3 1 1 1 2 2 2 2 SIS domain Glyco_trans_1_4 PF13692.6 gi|325969379|ref|YP_004245571.1| - 0.012 16.1 0.3 0.019 15.4 0.3 1.4 1 1 0 1 1 1 0 Glycosyl transferases group 1 PRMT5 PF05185.16 gi|325969379|ref|YP_004245571.1| - 0.026 14.4 2.4 0.51 10.2 0.1 2.2 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase LigB PF02900.18 gi|325969379|ref|YP_004245571.1| - 0.042 12.9 0.0 0.2 10.7 0.0 1.9 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase CCM2_C PF16545.5 gi|325969379|ref|YP_004245571.1| - 0.17 12.4 0.0 0.35 11.4 0.0 1.5 1 0 0 1 1 1 0 Cerebral cavernous malformation protein, harmonin-homology ThiF PF00899.21 gi|325969379|ref|YP_004245571.1| - 2.2 7.6 3.8 4.5 6.6 0.6 2.1 1 1 1 2 2 2 0 ThiF family PhoH PF02562.16 gi|325969380|ref|YP_004245572.1| - 4.4e-50 170.0 0.0 5.7e-50 169.6 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|325969380|ref|YP_004245572.1| - 1.5e-07 31.1 4.2 6.3e-07 29.1 2.1 2.3 1 1 1 2 2 2 1 KH domain KH_5 PF13184.6 gi|325969380|ref|YP_004245572.1| - 1.1e-05 25.4 0.7 0.029 14.5 0.1 2.7 2 0 0 2 2 2 2 NusA-like KH domain KH_1 PF00013.29 gi|325969380|ref|YP_004245572.1| - 0.00028 20.6 1.0 0.0014 18.4 0.2 2.3 2 0 0 2 2 2 1 KH domain IstB_IS21 PF01695.17 gi|325969380|ref|YP_004245572.1| - 0.015 15.0 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|325969380|ref|YP_004245572.1| - 0.022 14.5 0.0 0.23 11.2 0.0 2.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|325969380|ref|YP_004245572.1| - 0.062 13.8 0.3 0.15 12.6 0.3 1.9 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|325969380|ref|YP_004245572.1| - 0.18 12.1 1.6 2.2 8.5 1.6 2.2 1 1 0 1 1 1 0 AAA domain KH_4 PF13083.6 gi|325969380|ref|YP_004245572.1| - 0.22 11.4 2.4 0.48 10.3 1.2 2.2 2 1 0 2 2 2 0 KH domain LDcluster4 PF18306.1 gi|325969381|ref|YP_004245573.1| - 1.8e-15 56.9 0.0 2e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|325969381|ref|YP_004245573.1| - 0.00021 21.4 0.0 0.00028 21.0 0.0 1.5 1 1 0 1 1 1 1 Possible lysine decarboxylase LSDAT_prok PF18171.1 gi|325969381|ref|YP_004245573.1| - 0.0005 19.4 0.0 0.019 14.2 0.0 2.0 1 1 1 2 2 2 1 SLOG in TRPM, prokaryote Nuc_deoxyrib_tr PF05014.15 gi|325969381|ref|YP_004245573.1| - 0.035 14.1 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase LD_cluster2 PF18163.1 gi|325969381|ref|YP_004245573.1| - 0.23 10.9 0.1 0.68 9.4 0.1 1.7 2 0 0 2 2 2 0 SLOG cluster2 NOG1_N PF17835.1 gi|325969382|ref|YP_004245574.1| - 4.7e-28 98.2 0.1 7.1e-28 97.6 0.1 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|325969382|ref|YP_004245574.1| - 1.8e-21 75.7 0.1 4.2e-21 74.5 0.1 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|325969382|ref|YP_004245574.1| - 1.6e-17 63.6 0.0 3e-17 62.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|325969382|ref|YP_004245574.1| - 1.9e-12 47.0 0.2 2.7e-12 46.5 0.2 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Arf PF00025.21 gi|325969382|ref|YP_004245574.1| - 0.00098 18.6 0.1 0.0023 17.4 0.1 1.7 1 1 0 1 1 1 1 ADP-ribosylation factor family RsgA_GTPase PF03193.16 gi|325969382|ref|YP_004245574.1| - 0.0017 18.3 0.1 0.49 10.3 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase Ras PF00071.22 gi|325969382|ref|YP_004245574.1| - 0.0029 17.2 0.0 0.0071 16.0 0.0 1.6 1 1 0 1 1 1 1 Ras family AIG1 PF04548.16 gi|325969382|ref|YP_004245574.1| - 0.0046 16.3 0.0 0.0076 15.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family PduV-EutP PF10662.9 gi|325969382|ref|YP_004245574.1| - 0.013 15.2 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|325969382|ref|YP_004245574.1| - 0.019 14.5 0.1 0.049 13.2 0.1 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.10 gi|325969382|ref|YP_004245574.1| - 0.02 14.4 0.4 0.036 13.5 0.0 1.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|325969382|ref|YP_004245574.1| - 0.056 13.2 0.6 1.8 8.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|325969382|ref|YP_004245574.1| - 0.091 12.8 2.0 0.67 10.0 0.1 2.3 1 1 1 2 2 2 0 Dynamin family DUF998 PF06197.13 gi|325969383|ref|YP_004245575.1| - 6.7e-19 68.2 21.0 8.2e-19 67.9 21.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Wzy_C_2 PF11846.8 gi|325969383|ref|YP_004245575.1| - 5.8 6.8 5.7 0.89 9.4 0.8 2.0 2 1 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal MazE_antitoxin PF04014.18 gi|325969384|ref|YP_004245576.1| - 4.2e-09 36.1 0.7 1.3e-07 31.4 0.1 2.4 2 1 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325969384|ref|YP_004245576.1| - 0.14 12.7 0.1 0.46 10.9 0.0 1.8 2 0 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin DUF2079 PF09852.9 gi|325969385|ref|YP_004245577.1| - 1e-51 176.3 40.2 2e-51 175.3 40.2 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2079) Metallophos PF00149.28 gi|325969386|ref|YP_004245578.1| - 8.5e-12 46.0 0.0 1.1e-11 45.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|325969386|ref|YP_004245578.1| - 2.1e-08 34.5 0.0 4.4e-08 33.5 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Pyr_redox_2 PF07992.14 gi|325969387|ref|YP_004245579.1| - 1.5e-19 70.4 0.1 1.7e-18 66.9 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325969387|ref|YP_004245579.1| - 3e-05 24.5 4.8 0.024 15.2 0.9 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|325969387|ref|YP_004245579.1| - 7.8e-05 22.7 0.5 0.011 15.7 0.2 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding DAO PF01266.24 gi|325969387|ref|YP_004245579.1| - 0.0004 20.1 4.2 0.0018 17.9 2.2 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|325969387|ref|YP_004245579.1| - 0.0049 15.8 0.9 0.0055 15.6 0.2 1.4 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|325969387|ref|YP_004245579.1| - 0.009 16.2 0.3 0.02 15.1 0.3 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|325969387|ref|YP_004245579.1| - 0.027 13.5 0.4 0.047 12.7 0.4 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|325969387|ref|YP_004245579.1| - 0.029 13.4 0.7 0.066 12.3 0.4 1.6 2 0 0 2 2 2 0 FAD binding domain FAD_binding_3 PF01494.19 gi|325969387|ref|YP_004245579.1| - 0.052 12.8 0.6 0.12 11.5 0.3 1.7 2 0 0 2 2 2 0 FAD binding domain NAD_binding_7 PF13241.6 gi|325969387|ref|YP_004245579.1| - 0.058 13.8 0.2 0.13 12.8 0.2 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|325969387|ref|YP_004245579.1| - 0.067 12.5 1.6 0.14 11.4 0.6 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|325969387|ref|YP_004245579.1| - 0.1 11.7 0.0 0.24 10.5 0.0 1.5 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) TrkA_N PF02254.18 gi|325969387|ref|YP_004245579.1| - 0.88 9.8 3.7 0.37 11.1 0.6 2.0 3 0 0 3 3 3 0 TrkA-N domain RTX PF02382.15 gi|325969389|ref|YP_004245581.1| - 0.47 10.1 1.7 0.71 9.5 1.7 1.2 1 0 0 1 1 1 0 N-terminal domain in RTX protein MFS_1 PF07690.16 gi|325969389|ref|YP_004245581.1| - 1.8 7.4 28.0 3.1 6.6 28.0 1.3 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF4149 PF13664.6 gi|325969389|ref|YP_004245581.1| - 8.3 6.8 13.9 0.87 9.9 7.2 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4149) Lactamase_B PF00753.27 gi|325969390|ref|YP_004245582.1| - 1.1e-28 100.6 0.3 1.4e-28 100.2 0.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|325969390|ref|YP_004245582.1| - 0.00028 20.4 0.0 0.00067 19.2 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|325969390|ref|YP_004245582.1| - 0.071 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Cys_Met_Meta_PP PF01053.20 gi|325969391|ref|YP_004245583.1| - 1.8e-123 411.9 0.0 2e-123 411.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|325969391|ref|YP_004245583.1| - 6.9e-08 31.8 0.1 1.1e-07 31.2 0.1 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|325969391|ref|YP_004245583.1| - 1.2e-05 24.7 0.0 2.4e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|325969391|ref|YP_004245583.1| - 0.0095 15.3 1.6 0.04 13.2 0.1 2.6 3 1 0 3 3 3 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|325969391|ref|YP_004245583.1| - 0.014 14.7 0.0 5.2 6.2 0.0 2.5 3 0 0 3 3 3 0 Beta-eliminating lyase NmrA PF05368.13 gi|325969391|ref|YP_004245583.1| - 0.041 13.4 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 NmrA-like family Met_gamma_lyase PF06838.11 gi|325969391|ref|YP_004245583.1| - 0.097 11.2 0.3 1.1 7.7 0.1 2.0 2 0 0 2 2 2 0 Methionine gamma-lyase HHH_9 PF17674.1 gi|325969391|ref|YP_004245583.1| - 0.1 13.5 0.1 28 5.7 0.0 3.0 2 1 1 3 3 3 0 HHH domain P5CR_dimer PF14748.6 gi|325969392|ref|YP_004245584.1| - 1.5e-28 99.1 0.0 2.6e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|325969392|ref|YP_004245584.1| - 1.3e-18 67.3 0.3 2.5e-18 66.4 0.3 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|325969392|ref|YP_004245584.1| - 5.5e-08 32.6 0.8 1.2e-07 31.5 0.8 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|325969392|ref|YP_004245584.1| - 5e-06 26.8 0.1 4.8e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|325969392|ref|YP_004245584.1| - 1.7e-05 24.9 0.3 5e-05 23.3 0.3 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|325969392|ref|YP_004245584.1| - 0.00036 20.6 0.1 0.00064 19.8 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.9 gi|325969392|ref|YP_004245584.1| - 0.0025 17.7 1.1 0.0054 16.6 0.4 1.8 1 1 1 2 2 2 1 Rossmann-like domain IlvN PF07991.12 gi|325969392|ref|YP_004245584.1| - 0.0037 16.8 0.1 0.0058 16.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|325969392|ref|YP_004245584.1| - 0.0081 15.5 0.1 0.014 14.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|325969392|ref|YP_004245584.1| - 0.017 15.3 0.1 0.031 14.5 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain ThiF PF00899.21 gi|325969392|ref|YP_004245584.1| - 0.018 14.4 0.3 0.092 12.1 0.1 1.9 2 0 0 2 2 2 0 ThiF family PDH PF02153.17 gi|325969392|ref|YP_004245584.1| - 0.018 14.0 0.3 0.025 13.6 0.3 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase DapB_N PF01113.20 gi|325969392|ref|YP_004245584.1| - 0.041 14.0 0.2 0.083 13.0 0.2 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Metallophos_2 PF12850.7 gi|325969393|ref|YP_004245585.1| - 0.0002 21.6 0.6 0.00055 20.2 0.6 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|325969393|ref|YP_004245585.1| - 0.0031 18.0 5.6 0.034 14.7 5.6 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF1538 PF07556.11 gi|325969393|ref|YP_004245585.1| - 0.09 12.1 0.0 0.09 12.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1538) OrfB_Zn_ribbon PF07282.11 gi|325969394|ref|YP_004245586.1| - 3.1e-10 39.8 0.0 1.1e-09 38.0 0.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DUF4776 PF16003.5 gi|325969394|ref|YP_004245586.1| - 0.0046 16.0 0.6 0.0063 15.6 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4776) DNA_ligase_ZBD PF03119.16 gi|325969394|ref|YP_004245586.1| - 0.0098 15.9 2.0 0.65 10.1 0.4 2.4 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|325969394|ref|YP_004245586.1| - 0.014 15.0 0.4 0.025 14.2 0.4 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain RPA_interact_C PF14768.6 gi|325969394|ref|YP_004245586.1| - 0.035 14.7 0.5 0.064 13.8 0.5 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal SRI PF08236.11 gi|325969394|ref|YP_004245586.1| - 0.084 13.1 0.1 0.99 9.6 0.1 2.4 2 0 0 2 2 2 0 SRI (Set2 Rpb1 interacting) domain DZR PF12773.7 gi|325969394|ref|YP_004245586.1| - 0.085 12.9 0.6 0.15 12.1 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|325969394|ref|YP_004245586.1| - 0.089 12.9 2.1 0.56 10.4 2.1 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|325969394|ref|YP_004245586.1| - 0.09 12.5 2.8 0.29 10.9 2.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|325969394|ref|YP_004245586.1| - 0.16 11.9 0.5 0.27 11.2 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.10 gi|325969394|ref|YP_004245586.1| - 0.18 11.5 0.3 0.39 10.5 0.3 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Auto_anti-p27 PF06677.12 gi|325969394|ref|YP_004245586.1| - 0.42 10.8 2.8 0.76 10.0 2.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) YhfH PF14149.6 gi|325969394|ref|YP_004245586.1| - 0.49 10.4 3.7 6.4 6.8 3.3 2.2 1 1 1 2 2 2 0 YhfH-like protein zf-TFIIB PF13453.6 gi|325969394|ref|YP_004245586.1| - 0.75 9.2 3.9 3.7 6.9 3.9 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|325969394|ref|YP_004245586.1| - 1.3 9.1 2.9 15 5.7 2.9 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|325969394|ref|YP_004245586.1| - 1.4 8.7 3.5 9.3 6.1 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.6 gi|325969394|ref|YP_004245586.1| - 2.6 7.6 6.3 27 4.4 6.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain PDDEXK_10 PF07788.11 gi|325969395|ref|YP_004245587.1| - 3.2e-26 91.0 1.5 4.1e-26 90.7 1.5 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|325969395|ref|YP_004245587.1| - 7.8e-13 48.4 0.1 1.5e-12 47.4 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) PriA_3primeBD PF17764.1 gi|325969395|ref|YP_004245587.1| - 0.049 13.5 0.1 0.069 13.0 0.1 1.1 1 0 0 1 1 1 0 3′ DNA-binding domain (3′BD) DUF116 PF01976.17 gi|325969395|ref|YP_004245587.1| - 0.09 12.3 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF116 DUF996 PF06195.13 gi|325969396|ref|YP_004245588.1| - 9.2e-27 94.0 26.2 1.7e-26 93.1 26.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF996) DUF3379 PF11859.8 gi|325969396|ref|YP_004245588.1| - 0.53 9.6 1.5 0.99 8.7 1.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3379) PaREP1 PF05942.11 gi|325969397|ref|YP_004245589.1| - 3.7e-20 72.0 0.1 5.3e-20 71.5 0.1 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family CbiC PF02570.15 gi|325969397|ref|YP_004245589.1| - 0.16 11.6 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 Precorrin-8X methylmutase Aldo_ket_red PF00248.21 gi|325969398|ref|YP_004245590.1| - 1.8e-12 47.0 0.1 2.2e-12 46.8 0.1 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family zf-C4H2 PF10146.9 gi|325969399|ref|YP_004245591.1| - 0.0077 16.6 1.4 0.0077 16.6 1.4 1.7 2 0 0 2 2 2 1 Zinc finger-containing protein CARD_2 PF16739.5 gi|325969399|ref|YP_004245591.1| - 0.061 13.3 2.5 0.16 12.0 2.5 1.8 1 0 0 1 1 1 0 Caspase recruitment domain Hydantoinase_B PF02538.14 gi|325969399|ref|YP_004245591.1| - 0.077 11.4 0.3 0.11 10.9 0.3 1.2 1 0 0 1 1 1 0 Hydantoinase B/oxoprolinase FAM184 PF15665.5 gi|325969399|ref|YP_004245591.1| - 0.15 11.8 3.9 0.36 10.6 3.9 1.6 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B DUF2603 PF10788.9 gi|325969400|ref|YP_004245592.1| - 0.04 13.9 0.0 0.058 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2603) LPD16 PF18830.1 gi|325969401|ref|YP_004245593.1| - 0.00075 19.4 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 Large polyvalent protein-associated domain 16 EAGR_box PF16713.5 gi|325969401|ref|YP_004245593.1| - 0.045 13.4 1.2 0.11 12.2 1.2 1.7 1 0 0 1 1 1 0 Enriched in aromatic and glycine Residues box Aldo_ket_red PF00248.21 gi|325969402|ref|YP_004245594.1| - 8.7e-18 64.5 0.0 1.1e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Lyase_aromatic PF00221.19 gi|325969402|ref|YP_004245594.1| - 1.5e-07 30.5 0.0 2e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Aromatic amino acid lyase PIN PF01850.21 gi|325969403|ref|YP_004245595.1| - 0.00084 19.8 0.0 0.001 19.5 0.0 1.1 1 0 0 1 1 1 1 PIN domain Y1_Tnp PF01797.16 gi|325969404|ref|YP_004245596.1| - 2.3e-36 124.5 0.0 2.7e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_IS605 PF01385.19 gi|325969405|ref|YP_004245597.1| - 2.7e-28 98.6 0.0 5.5e-28 97.6 0.0 1.5 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|325969405|ref|YP_004245597.1| - 5.3e-17 61.5 0.1 9.9e-17 60.6 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvX PF03652.15 gi|325969405|ref|YP_004245597.1| - 0.03 14.7 0.0 0.062 13.7 0.0 1.5 1 0 0 1 1 1 0 Holliday junction resolvase Ribosomal_L37ae PF01780.19 gi|325969405|ref|YP_004245597.1| - 0.25 11.5 4.9 0.57 10.3 0.0 2.8 3 0 0 3 3 3 0 Ribosomal L37ae protein family CcdA PF07362.12 gi|325969406|ref|YP_004245598.1| - 0.00028 21.3 1.1 0.00036 20.9 1.0 1.3 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.11 gi|325969406|ref|YP_004245598.1| - 0.005 17.6 5.4 0.0092 16.7 5.4 1.4 1 1 0 1 1 1 1 Rv0623-like transcription factor TAtT PF16811.5 gi|325969406|ref|YP_004245598.1| - 0.011 15.0 0.3 0.013 14.8 0.3 1.0 1 0 0 1 1 1 0 TRAP transporter T-component Nup84_Nup100 PF04121.13 gi|325969406|ref|YP_004245598.1| - 0.038 12.1 0.3 0.038 12.1 0.3 1.0 1 0 0 1 1 1 0 Nuclear pore protein 84 / 107 RHH_1 PF01402.21 gi|325969406|ref|YP_004245598.1| - 0.06 13.3 1.7 0.06 13.3 1.7 2.7 2 1 1 3 3 3 0 Ribbon-helix-helix protein, copG family Ran-binding PF05508.11 gi|325969406|ref|YP_004245598.1| - 0.066 12.2 0.6 0.077 12.0 0.6 1.0 1 0 0 1 1 1 0 RanGTP-binding protein PI3K_rbd PF00794.18 gi|325969406|ref|YP_004245598.1| - 0.071 13.3 0.0 0.089 13.0 0.0 1.1 1 0 0 1 1 1 0 PI3-kinase family, ras-binding domain DUF2671 PF10877.8 gi|325969408|ref|YP_004245600.1| - 0.03 14.1 0.0 10 6.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2671) TPP_enzyme_C PF02775.21 gi|325969410|ref|YP_004245602.1| - 1.2e-31 109.6 0.2 2.3e-31 108.7 0.2 1.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|325969410|ref|YP_004245602.1| - 4.9e-24 84.2 0.2 9.6e-24 83.3 0.2 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 2_5_RNA_ligase2 PF13563.6 gi|325969411|ref|YP_004245603.1| - 3e-08 33.7 0.0 3.5e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|325969411|ref|YP_004245603.1| - 1.6e-05 25.0 0.0 0.13 12.4 0.0 2.3 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|325969411|ref|YP_004245603.1| - 0.0015 18.4 0.1 0.0052 16.7 0.0 1.7 2 0 0 2 2 2 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.12 gi|325969411|ref|YP_004245603.1| - 0.0019 17.6 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NS2A protein IstB_IS21 PF01695.17 gi|325969414|ref|YP_004245606.1| - 0.0008 19.2 0.9 0.042 13.6 0.0 2.5 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|325969414|ref|YP_004245606.1| - 0.0019 18.5 0.3 0.016 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|325969414|ref|YP_004245606.1| - 0.0063 16.8 0.2 0.02 15.2 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|325969414|ref|YP_004245606.1| - 0.0082 15.9 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|325969414|ref|YP_004245606.1| - 0.011 15.6 0.1 1.7 8.6 0.1 2.5 3 0 0 3 3 3 0 NACHT domain AAA_18 PF13238.6 gi|325969414|ref|YP_004245606.1| - 0.015 15.8 0.3 0.077 13.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|325969414|ref|YP_004245606.1| - 0.02 15.4 0.1 0.54 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|325969414|ref|YP_004245606.1| - 0.033 14.1 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|325969414|ref|YP_004245606.1| - 0.033 14.6 0.0 0.062 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|325969414|ref|YP_004245606.1| - 0.04 13.7 0.2 0.06 13.1 0.2 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|325969414|ref|YP_004245606.1| - 0.056 13.9 0.8 0.1 13.0 0.2 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|325969414|ref|YP_004245606.1| - 0.058 13.2 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|325969414|ref|YP_004245606.1| - 0.093 13.0 0.1 0.16 12.2 0.1 1.3 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|325969414|ref|YP_004245606.1| - 0.097 12.3 0.1 0.16 11.6 0.1 1.3 1 0 0 1 1 1 0 Guanylate kinase AAA_14 PF13173.6 gi|325969414|ref|YP_004245606.1| - 0.1 12.6 0.0 4.8 7.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|325969414|ref|YP_004245606.1| - 0.1 12.1 0.1 0.47 9.9 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|325969414|ref|YP_004245606.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|325969414|ref|YP_004245606.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|325969414|ref|YP_004245606.1| - 0.13 11.7 0.1 0.27 10.6 0.1 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.19 gi|325969414|ref|YP_004245606.1| - 0.13 11.8 0.2 0.31 10.6 0.2 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|325969414|ref|YP_004245606.1| - 0.2 11.3 0.0 0.93 9.2 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase CbiZ PF01955.18 gi|325969415|ref|YP_004245607.1| - 1e-33 117.1 2.7 1.2e-33 116.9 2.7 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DUF2977 PF11192.8 gi|325969415|ref|YP_004245607.1| - 0.027 14.6 0.0 0.065 13.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2977) ABC_tran PF00005.27 gi|325969416|ref|YP_004245608.1| - 3.8e-24 85.7 0.0 5.3e-24 85.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325969416|ref|YP_004245608.1| - 2.7e-15 57.0 0.0 8.4e-11 42.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325969416|ref|YP_004245608.1| - 3.1e-05 23.5 0.0 0.00011 21.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF4162 PF13732.6 gi|325969416|ref|YP_004245608.1| - 0.00027 21.6 0.0 0.00055 20.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|325969416|ref|YP_004245608.1| - 0.0012 19.2 0.0 0.0024 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|325969416|ref|YP_004245608.1| - 0.0048 16.8 0.1 0.0091 15.9 0.1 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|325969416|ref|YP_004245608.1| - 0.0066 17.0 0.1 3.1 8.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|325969416|ref|YP_004245608.1| - 0.0082 16.7 0.0 0.012 16.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|325969416|ref|YP_004245608.1| - 0.0093 15.7 0.0 0.016 14.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|325969416|ref|YP_004245608.1| - 0.01 15.8 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|325969416|ref|YP_004245608.1| - 0.014 14.6 0.0 0.046 12.9 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|325969416|ref|YP_004245608.1| - 0.014 15.5 0.1 0.048 13.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|325969416|ref|YP_004245608.1| - 0.018 15.0 0.1 0.062 13.3 0.0 1.9 2 1 1 3 3 2 0 AAA domain AAA PF00004.29 gi|325969416|ref|YP_004245608.1| - 0.023 15.1 0.0 0.043 14.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|325969416|ref|YP_004245608.1| - 0.033 14.4 0.0 0.12 12.6 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit cobW PF02492.19 gi|325969416|ref|YP_004245608.1| - 0.033 13.8 0.1 0.088 12.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|325969416|ref|YP_004245608.1| - 0.04 13.6 0.0 6.5 6.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|325969416|ref|YP_004245608.1| - 0.043 14.1 0.0 0.094 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain KDGP_aldolase PF07071.11 gi|325969416|ref|YP_004245608.1| - 0.059 13.2 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 KDGP aldolase NTPase_1 PF03266.15 gi|325969416|ref|YP_004245608.1| - 0.074 13.0 0.1 0.17 11.8 0.1 1.6 2 0 0 2 2 1 0 NTPase AAA_29 PF13555.6 gi|325969416|ref|YP_004245608.1| - 0.078 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|325969416|ref|YP_004245608.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 gi|325969416|ref|YP_004245608.1| - 0.12 9.9 0.0 0.15 9.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_7 PF12775.7 gi|325969416|ref|YP_004245608.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|325969416|ref|YP_004245608.1| - 0.14 11.8 0.1 1.7 8.2 0.1 2.1 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|325969416|ref|YP_004245608.1| - 0.15 12.4 0.0 0.25 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|325969416|ref|YP_004245608.1| - 0.18 11.0 0.0 0.29 10.2 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase IstB_IS21 PF01695.17 gi|325969416|ref|YP_004245608.1| - 0.2 11.4 0.0 11 5.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC2_membrane PF01061.24 gi|325969417|ref|YP_004245609.1| - 1.7e-14 53.7 24.0 2.9e-14 53.0 24.0 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|325969417|ref|YP_004245609.1| - 3.4e-08 33.0 23.4 3.4e-08 33.0 23.4 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein HTH_20 PF12840.7 gi|325969418|ref|YP_004245610.1| - 5.3e-11 42.4 0.1 9e-11 41.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|325969418|ref|YP_004245610.1| - 9e-08 31.9 0.1 1.9e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|325969418|ref|YP_004245610.1| - 0.0018 18.1 0.1 0.0028 17.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|325969418|ref|YP_004245610.1| - 0.0032 17.0 0.2 0.039 13.5 0.0 2.5 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|325969418|ref|YP_004245610.1| - 0.0077 16.1 0.4 0.012 15.4 0.1 1.6 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|325969418|ref|YP_004245610.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF948 PF06103.11 gi|325969419|ref|YP_004245611.1| - 0.0078 16.4 0.1 0.0078 16.4 0.1 1.9 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) COMP PF11598.8 gi|325969419|ref|YP_004245611.1| - 0.012 16.0 0.1 0.024 15.1 0.1 1.5 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein DUF3093 PF11292.8 gi|325969419|ref|YP_004245611.1| - 0.038 14.3 0.3 0.047 14.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) DASH_Duo1 PF08651.10 gi|325969419|ref|YP_004245611.1| - 0.17 11.7 0.2 1.4 8.8 0.0 2.0 1 1 1 2 2 2 0 DASH complex subunit Duo1 DUF2852 PF11014.8 gi|325969419|ref|YP_004245611.1| - 0.53 10.4 2.0 0.47 10.6 0.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2852) DUF2070 PF09843.9 gi|325969419|ref|YP_004245611.1| - 1.3 7.2 6.1 2.7 6.2 6.1 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) OCD_Mu_crystall PF02423.15 gi|325969422|ref|YP_004245614.1| - 7.9e-65 218.9 0.7 1.2e-64 218.3 0.7 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|325969422|ref|YP_004245614.1| - 1.3e-07 31.8 0.0 2.3e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|325969422|ref|YP_004245614.1| - 0.0097 16.5 0.2 0.032 14.8 0.0 2.0 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|325969422|ref|YP_004245614.1| - 0.037 14.8 0.0 0.073 13.9 0.0 1.5 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NTP_transf_3 PF12804.7 gi|325969424|ref|YP_004245616.1| - 5.5e-39 134.1 0.0 7e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.16 gi|325969424|ref|YP_004245616.1| - 1.3e-07 31.0 0.1 2.5e-07 30.1 0.1 1.5 1 1 0 1 1 1 1 Guanylyl transferase CofC like IspD PF01128.19 gi|325969424|ref|YP_004245616.1| - 9.1e-07 28.8 0.0 1.4e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF2840 PF11000.8 gi|325969424|ref|YP_004245616.1| - 0.008 16.0 0.1 0.75 9.6 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2840) CTP_transf_3 PF02348.19 gi|325969424|ref|YP_004245616.1| - 0.18 11.7 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase zf-C4_Topoisom PF01396.19 gi|325969425|ref|YP_004245617.1| - 0.092 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger SNARE_assoc PF09335.11 gi|325969426|ref|YP_004245618.1| - 1.6e-19 70.6 10.4 1.6e-19 70.6 10.4 1.6 2 0 0 2 2 2 1 SNARE associated Golgi protein dsDNA_bind PF01984.20 gi|325969427|ref|YP_004245619.1| - 0.013 15.8 3.5 0.8 10.0 0.0 2.3 1 1 1 2 2 2 0 Double-stranded DNA-binding domain MyTH4 PF00784.17 gi|325969427|ref|YP_004245619.1| - 0.027 15.0 0.3 0.038 14.5 0.2 1.4 1 1 0 1 1 1 0 MyTH4 domain SDP_N PF12278.8 gi|325969427|ref|YP_004245619.1| - 0.041 14.0 0.9 0.059 13.5 0.9 1.3 1 0 0 1 1 1 0 Sex determination protein N terminal MazE_antitoxin PF04014.18 gi|325969429|ref|YP_004245621.1| - 4.2e-09 36.1 1.0 4.2e-09 36.1 1.0 1.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin CDC48_N PF02359.18 gi|325969429|ref|YP_004245621.1| - 0.052 13.7 0.1 0.14 12.4 0.0 1.7 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain PIN PF01850.21 gi|325969430|ref|YP_004245622.1| - 1.7e-09 38.2 2.5 0.00021 21.8 0.1 2.1 1 1 1 2 2 2 2 PIN domain TPR_17 PF13431.6 gi|325969432|ref|YP_004245624.1| - 0.017 15.5 0.0 0.026 14.9 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_22 PF13401.6 gi|325969432|ref|YP_004245624.1| - 0.022 15.0 0.1 0.025 14.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain PaREP1 PF05942.11 gi|325969433|ref|YP_004245625.1| - 9.1e-21 73.9 0.0 1.3e-20 73.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF2095 PF09868.9 gi|325969433|ref|YP_004245625.1| - 0.0057 16.6 0.1 0.0089 16.0 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) Polbeta PF18765.1 gi|325969434|ref|YP_004245626.1| - 0.0019 18.3 0.0 0.0029 17.7 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|325969435|ref|YP_004245627.1| - 0.00035 20.4 0.1 0.00036 20.4 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 MazE_antitoxin PF04014.18 gi|325969436|ref|YP_004245628.1| - 0.00032 20.5 0.1 0.0031 17.4 0.1 2.2 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PPS_PS PF02006.16 gi|325969439|ref|YP_004245631.1| - 1.6e-77 259.0 1.2 2e-77 258.7 1.2 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF1852 PF08908.11 gi|325969439|ref|YP_004245631.1| - 0.017 14.2 0.4 0.025 13.6 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1852) GHMP_kinases_N PF00288.26 gi|325969440|ref|YP_004245632.1| - 2.9e-08 33.8 2.0 4.7e-08 33.1 2.0 1.3 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.11 gi|325969440|ref|YP_004245632.1| - 0.048 13.6 1.2 0.1 12.6 1.2 1.4 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus Radical_SAM PF04055.21 gi|325969441|ref|YP_004245633.1| - 4.1e-12 46.8 0.0 4.8e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|325969441|ref|YP_004245633.1| - 1.3e-11 44.7 0.0 2.4e-11 43.8 0.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|325969441|ref|YP_004245633.1| - 5.6e-07 29.9 0.0 8.5e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain QueC PF06508.13 gi|325969442|ref|YP_004245634.1| - 1.2e-55 188.3 0.0 1.6e-55 187.9 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|325969442|ref|YP_004245634.1| - 6.3e-15 55.2 0.0 1.2e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|325969442|ref|YP_004245634.1| - 7.1e-10 39.2 0.0 1.3e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|325969442|ref|YP_004245634.1| - 1.1e-06 28.4 0.0 5.1e-06 26.2 0.0 2.0 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|325969442|ref|YP_004245634.1| - 0.00024 20.0 0.0 0.0012 17.8 0.0 1.9 2 1 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|325969442|ref|YP_004245634.1| - 0.0015 18.4 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 PP-loop family ATP-grasp PF02222.22 gi|325969444|ref|YP_004245636.1| - 2.1e-49 167.4 0.1 2.9e-49 166.9 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|325969444|ref|YP_004245636.1| - 8.3e-17 60.6 0.1 2.9e-16 58.9 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|325969444|ref|YP_004245636.1| - 2.8e-05 23.7 0.0 5.3e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|325969444|ref|YP_004245636.1| - 4e-05 23.7 0.1 6.4e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|325969444|ref|YP_004245636.1| - 5.2e-05 22.7 0.0 0.00046 19.6 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 gi|325969444|ref|YP_004245636.1| - 0.00087 18.8 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain AIRC PF00731.20 gi|325969445|ref|YP_004245637.1| - 1.8e-66 222.3 0.4 2e-66 222.1 0.4 1.0 1 0 0 1 1 1 1 AIR carboxylase PrpR_N PF06506.11 gi|325969445|ref|YP_004245637.1| - 0.014 15.0 0.0 0.035 13.7 0.0 1.7 1 1 1 2 2 2 0 Propionate catabolism activator AIRS_C PF02769.22 gi|325969446|ref|YP_004245638.1| - 1.8e-45 154.9 0.3 3.7e-28 98.6 0.2 2.4 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|325969446|ref|YP_004245638.1| - 6.8e-42 142.1 0.2 1.9e-20 73.3 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|325969446|ref|YP_004245638.1| - 3.3e-08 33.9 0.1 8.2e-08 32.7 0.1 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain DUF3801 PF12687.7 gi|325969446|ref|YP_004245638.1| - 0.22 11.6 0.0 0.51 10.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3801) GATase_7 PF13537.6 gi|325969447|ref|YP_004245639.1| - 2.5e-18 66.2 0.0 4.1e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|325969447|ref|YP_004245639.1| - 1.5e-15 57.6 0.0 2.9e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|325969447|ref|YP_004245639.1| - 0.0044 16.6 0.5 0.0073 15.8 0.1 1.5 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyltran PF00156.27 gi|325969448|ref|YP_004245640.1| - 8.2e-10 38.4 0.4 1.4e-09 37.7 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|325969448|ref|YP_004245640.1| - 0.0052 16.3 0.0 0.023 14.2 0.0 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase AIRS_C PF02769.22 gi|325969449|ref|YP_004245641.1| - 2.7e-20 73.1 0.0 3.8e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|325969449|ref|YP_004245641.1| - 1.6e-12 47.9 0.6 5.5e-12 46.2 0.6 1.9 1 1 1 2 2 2 1 AIR synthase related protein, N-terminal domain SAICAR_synt PF01259.18 gi|325969450|ref|YP_004245642.1| - 5.6e-53 180.1 0.0 6.8e-53 179.9 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase GARS_A PF01071.19 gi|325969451|ref|YP_004245643.1| - 4.8e-42 143.9 0.0 8.5e-42 143.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|325969451|ref|YP_004245643.1| - 4.7e-19 68.9 0.1 1.3e-18 67.5 0.1 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|325969451|ref|YP_004245643.1| - 3.7e-05 23.9 0.0 8.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|325969451|ref|YP_004245643.1| - 0.0061 16.6 0.0 0.08 13.0 0.0 2.7 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|325969451|ref|YP_004245643.1| - 0.0097 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|325969451|ref|YP_004245643.1| - 0.04 13.5 0.4 0.22 11.1 0.0 2.3 3 0 0 3 3 3 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|325969451|ref|YP_004245643.1| - 0.052 13.0 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|325969452|ref|YP_004245644.1| - 3.8e-42 143.8 0.0 5.8e-42 143.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|325969452|ref|YP_004245644.1| - 6.6e-09 35.6 0.0 1.5e-08 34.4 0.0 1.5 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|325969452|ref|YP_004245644.1| - 8.8e-09 35.2 0.0 1.5e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain LAL_C2 PF18603.1 gi|325969452|ref|YP_004245644.1| - 1.2e-05 25.3 0.3 0.00021 21.4 0.3 2.5 1 1 0 1 1 1 1 L-amino acid ligase C-terminal domain 2 Pyr_redox PF00070.27 gi|325969452|ref|YP_004245644.1| - 0.0014 19.2 0.4 0.57 10.8 0.1 3.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|325969452|ref|YP_004245644.1| - 0.0024 17.3 0.0 0.0041 16.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PurK_C PF17769.1 gi|325969452|ref|YP_004245644.1| - 0.0065 16.1 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Epimerase PF01370.21 gi|325969452|ref|YP_004245644.1| - 0.012 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|325969452|ref|YP_004245644.1| - 0.022 13.9 0.1 0.045 12.8 0.0 1.5 2 0 0 2 2 2 0 RmlD substrate binding domain Pyr_redox_2 PF07992.14 gi|325969452|ref|YP_004245644.1| - 0.054 12.7 0.1 0.25 10.5 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ATPgrasp_YheCD PF14398.6 gi|325969452|ref|YP_004245644.1| - 0.058 12.6 0.0 0.65 9.2 0.0 2.1 2 0 0 2 2 2 0 YheC/D like ATP-grasp 3HCDH_N PF02737.18 gi|325969452|ref|YP_004245644.1| - 0.062 13.2 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-grasp_4 PF13535.6 gi|325969452|ref|YP_004245644.1| - 0.065 12.8 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 ATP-grasp domain GATase_5 PF13507.6 gi|325969453|ref|YP_004245645.1| - 4.5e-37 127.6 0.0 7.1e-36 123.6 0.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|325969453|ref|YP_004245645.1| - 2.2e-07 30.9 0.0 2.9e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|325969453|ref|YP_004245645.1| - 3.7e-07 30.1 0.0 5.8e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|325969453|ref|YP_004245645.1| - 5.9e-07 29.3 0.0 9.6e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_C26 PF07722.13 gi|325969453|ref|YP_004245645.1| - 0.017 14.9 0.1 0.027 14.3 0.1 1.2 1 0 0 1 1 1 0 Peptidase C26 PurS PF02700.14 gi|325969454|ref|YP_004245646.1| - 1.1e-13 51.1 0.0 1.3e-13 50.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF1297 PF06973.12 gi|325969455|ref|YP_004245647.1| - 2.6e-60 203.2 0.4 5.5e-60 202.1 0.4 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|325969455|ref|YP_004245647.1| - 3.4e-39 133.6 0.0 5.1e-39 133.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|325969455|ref|YP_004245647.1| - 0.00014 22.0 0.0 0.00023 21.3 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|325969455|ref|YP_004245647.1| - 0.00024 20.8 0.0 0.00064 19.4 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 gi|325969455|ref|YP_004245647.1| - 0.2 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1297 PF06973.12 gi|325969456|ref|YP_004245648.1| - 1.2e-80 269.5 0.0 1.5e-80 269.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|325969456|ref|YP_004245648.1| - 2.7e-47 159.7 0.0 3.9e-47 159.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) Pribosyltran PF00156.27 gi|325969457|ref|YP_004245649.1| - 4.5e-12 45.8 0.1 6.8e-12 45.2 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Glyco_trans_4_2 PF13477.6 gi|325969457|ref|YP_004245649.1| - 0.026 14.6 0.1 0.21 11.6 0.0 2.0 1 1 1 2 2 2 0 Glycosyl transferase 4-like Lactonase PF10282.9 gi|325969458|ref|YP_004245650.1| - 1.9e-06 27.4 3.8 0.11 11.7 0.8 3.5 2 1 1 3 3 3 3 Lactonase, 7-bladed beta-propeller Stevor PF17410.2 gi|325969458|ref|YP_004245650.1| - 0.011 15.2 1.2 0.018 14.6 1.2 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF5370 PF17340.2 gi|325969458|ref|YP_004245650.1| - 0.034 14.0 0.1 0.87 9.5 0.0 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5370) MazE_antitoxin PF04014.18 gi|325969460|ref|YP_004245652.1| - 8.2e-05 22.4 1.0 0.038 13.9 0.0 2.5 3 0 0 3 3 3 2 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|325969460|ref|YP_004245652.1| - 0.066 13.7 0.1 7.6 7.0 0.0 2.1 2 0 0 2 2 2 0 prlF antitoxin for toxin YhaV_toxin DUF4245 PF14030.6 gi|325969461|ref|YP_004245653.1| - 0.23 11.5 0.0 0.4 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) MazE_antitoxin PF04014.18 gi|325969462|ref|YP_004245654.1| - 7.1e-05 22.6 0.3 0.0014 18.5 0.0 2.4 2 1 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin T2SSF PF00482.23 gi|325969463|ref|YP_004245655.1| - 3e-12 46.6 2.9 3e-12 46.6 2.9 2.7 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F DUF4349 PF14257.6 gi|325969463|ref|YP_004245655.1| - 0.89 9.0 3.0 9.1 5.7 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) T2SSE PF00437.20 gi|325969464|ref|YP_004245656.1| - 1.1e-46 159.1 0.0 1.6e-46 158.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|325969464|ref|YP_004245656.1| - 1e-06 29.3 0.0 2.1e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|325969464|ref|YP_004245656.1| - 1.6e-05 24.6 0.0 3.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|325969464|ref|YP_004245656.1| - 2.3e-05 24.4 0.0 4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|325969464|ref|YP_004245656.1| - 5.3e-05 23.8 0.2 9.7e-05 23.0 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|325969464|ref|YP_004245656.1| - 0.00019 21.8 0.0 0.00037 20.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|325969464|ref|YP_004245656.1| - 0.00091 19.2 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase cobW PF02492.19 gi|325969464|ref|YP_004245656.1| - 0.0021 17.7 0.0 0.004 16.8 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|325969464|ref|YP_004245656.1| - 0.0056 16.7 0.0 0.016 15.3 0.0 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|325969464|ref|YP_004245656.1| - 0.0088 15.6 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain FtsK_SpoIIIE PF01580.18 gi|325969464|ref|YP_004245656.1| - 0.013 14.9 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|325969464|ref|YP_004245656.1| - 0.013 15.8 0.0 0.028 14.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|325969464|ref|YP_004245656.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|325969464|ref|YP_004245656.1| - 0.02 15.1 0.0 0.035 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|325969464|ref|YP_004245656.1| - 0.026 14.2 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|325969464|ref|YP_004245656.1| - 0.039 13.4 0.0 0.071 12.5 0.0 1.5 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Pox_A32 PF04665.12 gi|325969464|ref|YP_004245656.1| - 0.044 13.2 0.0 0.096 12.1 0.0 1.5 1 0 0 1 1 1 0 Poxvirus A32 protein IstB_IS21 PF01695.17 gi|325969464|ref|YP_004245656.1| - 0.045 13.5 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_15 PF13175.6 gi|325969464|ref|YP_004245656.1| - 0.055 13.2 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|325969464|ref|YP_004245656.1| - 0.059 13.4 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TrwB_AAD_bind PF10412.9 gi|325969464|ref|YP_004245656.1| - 0.073 12.0 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|325969464|ref|YP_004245656.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|325969464|ref|YP_004245656.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|325969464|ref|YP_004245656.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Septin PF00735.18 gi|325969464|ref|YP_004245656.1| - 0.14 11.4 0.0 0.31 10.3 0.0 1.5 2 0 0 2 2 2 0 Septin Mg_chelatase PF01078.21 gi|325969464|ref|YP_004245656.1| - 0.18 11.2 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SSF PF00482.23 gi|325969465|ref|YP_004245657.1| - 3.9e-05 23.6 2.1 0.00012 22.1 2.1 1.8 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|325969465|ref|YP_004245657.1| - 0.27 9.9 3.2 0.49 9.1 3.2 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Arch_flagellin PF01917.16 gi|325969466|ref|YP_004245658.1| - 0.025 14.8 11.3 0.45 10.7 11.3 2.3 1 1 0 1 1 1 0 Archaebacterial flagellin ACT PF01842.25 gi|325969469|ref|YP_004245661.1| - 2.4e-05 24.0 0.1 4.5e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|325969469|ref|YP_004245661.1| - 0.0037 17.8 0.1 0.0079 16.8 0.1 1.6 1 1 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|325969469|ref|YP_004245661.1| - 0.058 13.4 0.0 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 ACT domain Fer4 PF00037.27 gi|325969470|ref|YP_004245662.1| - 1.5e-11 43.6 12.5 4.1e-06 26.4 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325969470|ref|YP_004245662.1| - 1.9e-10 41.2 5.2 3.5e-10 40.3 5.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325969470|ref|YP_004245662.1| - 6.8e-09 35.7 5.8 1.2e-08 34.9 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325969470|ref|YP_004245662.1| - 1.5e-08 34.6 7.2 2.6e-08 33.9 7.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325969470|ref|YP_004245662.1| - 6.1e-08 33.5 7.3 0.0008 20.3 0.7 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|325969470|ref|YP_004245662.1| - 3.5e-07 30.5 1.8 0.019 15.4 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325969470|ref|YP_004245662.1| - 1.4e-06 28.3 18.2 4.4e-05 23.5 10.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325969470|ref|YP_004245662.1| - 1.7e-06 27.8 13.2 0.0011 18.9 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|325969470|ref|YP_004245662.1| - 1.8e-06 28.4 2.7 0.034 14.7 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325969470|ref|YP_004245662.1| - 2.1e-05 24.3 9.7 0.025 14.7 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|325969470|ref|YP_004245662.1| - 0.00066 20.4 17.7 0.093 13.7 5.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|325969470|ref|YP_004245662.1| - 0.00089 19.0 4.0 0.072 12.9 0.2 2.3 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|325969470|ref|YP_004245662.1| - 0.0011 19.3 12.9 0.045 14.3 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_5 PF12801.7 gi|325969470|ref|YP_004245662.1| - 0.0072 16.3 2.2 0.2 11.6 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|325969470|ref|YP_004245662.1| - 0.0079 16.9 8.0 2.4 9.0 3.9 3.2 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|325969470|ref|YP_004245662.1| - 0.075 13.6 12.5 0.29 11.7 2.5 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|325969470|ref|YP_004245662.1| - 0.16 12.1 13.3 0.24 11.6 2.5 2.8 2 1 0 3 3 3 0 4Fe-4S dicluster domain TrmB PF01978.19 gi|325969471|ref|YP_004245663.1| - 1.4e-08 34.5 0.1 1.1e-05 25.2 0.0 3.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|325969471|ref|YP_004245663.1| - 1.8e-07 30.8 0.0 5.9e-07 29.2 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|325969471|ref|YP_004245663.1| - 4.4e-05 22.9 0.2 0.0029 17.1 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|325969471|ref|YP_004245663.1| - 0.00025 21.0 0.0 0.0017 18.3 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|325969471|ref|YP_004245663.1| - 0.00027 20.7 0.0 0.00064 19.6 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|325969471|ref|YP_004245663.1| - 0.00039 20.3 0.1 0.0041 17.0 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|325969471|ref|YP_004245663.1| - 0.0019 18.0 0.0 0.0064 16.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RP-C PF03428.13 gi|325969471|ref|YP_004245663.1| - 0.0055 16.4 0.0 0.0084 15.8 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain AbiEi_4 PF13338.6 gi|325969471|ref|YP_004245663.1| - 0.011 15.8 0.1 0.02 15.0 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_29 PF13551.6 gi|325969471|ref|YP_004245663.1| - 0.014 15.4 0.1 0.033 14.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn helix Terminase_4 PF05119.12 gi|325969471|ref|YP_004245663.1| - 0.12 12.9 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Phage terminase, small subunit CoA_binding PF02629.19 gi|325969472|ref|YP_004245664.1| - 4.1e-30 104.3 0.6 4.1e-30 104.3 0.6 2.2 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|325969472|ref|YP_004245664.1| - 2.2e-16 60.0 0.1 3.6e-16 59.3 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|325969472|ref|YP_004245664.1| - 1.1e-12 47.9 0.0 2.2e-12 47.0 0.0 1.5 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|325969472|ref|YP_004245664.1| - 6.9e-08 33.0 0.0 1.2e-07 32.2 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|325969473|ref|YP_004245665.1| - 1e-52 178.7 0.4 7.1e-52 175.9 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|325969473|ref|YP_004245665.1| - 8.4e-20 71.1 0.3 1.3e-19 70.5 0.3 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|325969473|ref|YP_004245665.1| - 2.3e-07 30.5 1.8 8e-07 28.7 0.4 2.4 2 1 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|325969473|ref|YP_004245665.1| - 0.02 14.7 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain OKR_DC_1_N PF03709.15 gi|325969473|ref|YP_004245665.1| - 0.04 14.2 0.0 0.088 13.1 0.0 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HrpB1_HrpK PF09613.10 gi|325969475|ref|YP_004245667.1| - 0.014 15.0 0.0 0.11 12.1 0.0 2.1 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB1_HrpK) TrmB PF01978.19 gi|325969476|ref|YP_004245668.1| - 9.2e-10 38.3 0.0 4e-09 36.2 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|325969476|ref|YP_004245668.1| - 2.8e-06 26.8 0.0 6.5e-06 25.6 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|325969476|ref|YP_004245668.1| - 0.00024 20.8 0.5 0.0005 19.8 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|325969476|ref|YP_004245668.1| - 0.00073 19.4 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|325969476|ref|YP_004245668.1| - 0.0019 18.1 0.1 0.0043 17.0 0.1 1.6 1 0 0 1 1 1 1 HTH domain LIFR_N PF18207.1 gi|325969476|ref|YP_004245668.1| - 0.006 16.9 0.0 1.8 9.0 0.0 3.0 3 0 0 3 3 3 1 Leukemia inhibitory factor receptor N-terminal domain HTH_5 PF01022.20 gi|325969476|ref|YP_004245668.1| - 0.012 15.4 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|325969476|ref|YP_004245668.1| - 0.015 15.2 0.1 0.028 14.2 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Orf78 PF06024.12 gi|325969476|ref|YP_004245668.1| - 0.019 15.2 0.4 0.038 14.3 0.4 1.4 1 0 0 1 1 1 0 Orf78 (ac78) HTH_23 PF13384.6 gi|325969476|ref|YP_004245668.1| - 0.027 14.2 0.1 0.048 13.5 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|325969476|ref|YP_004245668.1| - 0.04 14.1 0.0 0.088 13.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|325969476|ref|YP_004245668.1| - 0.061 13.3 0.0 0.38 10.7 0.0 2.3 3 0 0 3 3 3 0 MarR family DUF2250 PF10007.9 gi|325969476|ref|YP_004245668.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.27 gi|325969476|ref|YP_004245668.1| - 0.12 12.3 0.0 0.3 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.7 gi|325969476|ref|YP_004245668.1| - 0.17 12.0 0.0 0.32 11.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|325969476|ref|YP_004245668.1| - 0.2 11.7 1.8 0.26 11.3 0.1 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AdoHcyase PF05221.17 gi|325969477|ref|YP_004245669.1| - 1.5e-74 250.8 0.2 2.1e-74 250.4 0.2 1.1 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|325969477|ref|YP_004245669.1| - 2.9e-51 173.8 0.6 5.8e-51 172.8 0.6 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|325969477|ref|YP_004245669.1| - 2.7e-07 30.1 0.5 5.8e-07 29.0 0.2 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|325969477|ref|YP_004245669.1| - 3e-05 23.6 0.2 7e-05 22.5 0.2 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|325969477|ref|YP_004245669.1| - 0.0042 17.3 0.4 0.062 13.6 0.1 2.4 2 0 0 2 2 2 1 TrkA-N domain Arg_repressor PF01316.21 gi|325969477|ref|YP_004245669.1| - 0.11 12.3 0.0 0.41 10.4 0.0 2.0 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain ABC_tran PF00005.27 gi|325969478|ref|YP_004245670.1| - 3.7e-31 108.5 0.0 6.1e-31 107.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325969478|ref|YP_004245670.1| - 1.1e-06 28.7 0.0 0.0037 17.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|325969478|ref|YP_004245670.1| - 2.7e-06 28.1 0.1 8.6e-06 26.5 0.1 2.0 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|325969478|ref|YP_004245670.1| - 7.8e-06 26.0 0.0 2.3e-05 24.4 0.0 1.9 2 0 0 2 2 1 1 TOBE domain GlcV_C_terminal PF17847.1 gi|325969478|ref|YP_004245670.1| - 1.4e-05 25.5 1.0 3.2e-05 24.3 1.0 1.7 1 0 0 1 1 1 1 Glucose ABC transporter C-terminal domain CysA_C_terminal PF17850.1 gi|325969478|ref|YP_004245670.1| - 0.0011 19.5 0.0 0.024 15.2 0.0 2.5 2 0 0 2 2 2 1 CysA C-terminal regulatory domain ABC_ATPase PF09818.9 gi|325969478|ref|YP_004245670.1| - 0.0025 16.7 0.1 2.9 6.6 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|325969478|ref|YP_004245670.1| - 0.0083 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|325969478|ref|YP_004245670.1| - 0.011 16.0 0.1 0.047 14.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|325969478|ref|YP_004245670.1| - 0.018 15.4 0.0 0.027 14.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|325969478|ref|YP_004245670.1| - 0.02 14.6 0.0 0.052 13.3 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|325969478|ref|YP_004245670.1| - 0.027 14.9 0.1 0.33 11.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|325969478|ref|YP_004245670.1| - 0.035 13.8 0.1 0.091 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|325969478|ref|YP_004245670.1| - 0.06 13.6 0.1 0.48 10.7 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SMC_N PF02463.19 gi|325969478|ref|YP_004245670.1| - 0.062 12.7 0.0 2.9 7.3 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DLIC PF05783.11 gi|325969478|ref|YP_004245670.1| - 0.082 11.7 0.2 0.35 9.6 0.0 1.8 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) Rad17 PF03215.15 gi|325969478|ref|YP_004245670.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain sCache_3_2 PF17203.4 gi|325969478|ref|YP_004245670.1| - 0.11 12.6 0.1 0.23 11.6 0.1 1.4 1 0 0 1 1 1 0 Single cache domain 3 NACHT PF05729.12 gi|325969478|ref|YP_004245670.1| - 0.18 11.7 0.0 0.43 10.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain OTCace_N PF02729.21 gi|325969480|ref|YP_004245672.1| - 2.1e-41 141.4 0.0 2.9e-41 140.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|325969480|ref|YP_004245672.1| - 1.4e-25 90.2 0.0 2.1e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|325969481|ref|YP_004245673.1| - 2.1e-33 114.4 0.7 2.8e-33 114.0 0.7 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|325969481|ref|YP_004245673.1| - 1.2e-18 66.7 0.8 2.4e-18 65.8 0.8 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Vps16_C PF04840.12 gi|325969481|ref|YP_004245673.1| - 0.012 14.7 0.1 0.081 11.9 0.1 1.9 1 1 1 2 2 2 0 Vps16, C-terminal region Pribosyltran PF00156.27 gi|325969482|ref|YP_004245674.1| - 2.4e-18 66.2 0.6 3.3e-18 65.7 0.6 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|325969482|ref|YP_004245674.1| - 0.00065 19.2 0.1 0.00085 18.8 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|325969482|ref|YP_004245674.1| - 0.07 12.6 0.1 0.1 12.1 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase DHO_dh PF01180.21 gi|325969483|ref|YP_004245675.1| - 6.4e-42 143.8 0.0 1.1e-41 143.0 0.0 1.3 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Peptidase_M50 PF02163.22 gi|325969484|ref|YP_004245676.1| - 0.0023 17.2 12.0 0.098 11.9 0.5 3.0 1 1 1 2 2 2 2 Peptidase family M50 PUA PF01472.20 gi|325969485|ref|YP_004245677.1| - 0.075 13.0 0.0 0.21 11.6 0.0 1.7 1 0 0 1 1 1 0 PUA domain DUF4346 PF14251.6 gi|325969485|ref|YP_004245677.1| - 0.099 12.7 0.1 0.26 11.3 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4346) DUF996 PF06195.13 gi|325969486|ref|YP_004245678.1| - 3.1e-08 34.0 15.8 3.1e-08 34.0 15.8 3.6 2 1 1 3 3 3 2 Protein of unknown function (DUF996) HTH_21 PF13276.6 gi|325969487|ref|YP_004245679.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 HTH-like domain PheRS_DBD2 PF18554.1 gi|325969487|ref|YP_004245679.1| - 0.17 11.9 0.6 0.29 11.2 0.6 1.4 1 0 0 1 1 1 0 PheRS DNA binding domain 2 2-Hacid_dh_C PF02826.19 gi|325969488|ref|YP_004245680.1| - 1.3e-35 122.3 0.0 1.9e-35 121.9 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|325969488|ref|YP_004245680.1| - 4.7e-16 58.7 0.0 6.2e-16 58.3 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|325969488|ref|YP_004245680.1| - 5.8e-05 23.6 0.0 0.00035 21.1 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|325969488|ref|YP_004245680.1| - 0.063 13.4 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ribosomal_S14 PF00253.21 gi|325969489|ref|YP_004245681.1| - 3.1e-11 42.9 3.3 3.9e-11 42.5 3.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|325969489|ref|YP_004245681.1| - 0.00096 19.0 3.9 0.0015 18.4 3.9 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-HYPF PF07503.12 gi|325969489|ref|YP_004245681.1| - 0.014 15.1 0.7 0.62 9.9 0.0 2.1 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS91 PF14319.6 gi|325969489|ref|YP_004245681.1| - 0.016 15.3 0.3 0.016 15.3 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DZR PF12773.7 gi|325969489|ref|YP_004245681.1| - 0.032 14.3 0.2 0.039 14.0 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-CCHC_3 PF13917.6 gi|325969489|ref|YP_004245681.1| - 0.044 13.8 1.4 0.87 9.6 0.1 2.4 2 0 0 2 2 2 0 Zinc knuckle zf_UBZ PF18439.1 gi|325969489|ref|YP_004245681.1| - 0.14 11.8 0.5 12 5.6 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-CCHC_2 PF13696.6 gi|325969489|ref|YP_004245681.1| - 0.52 10.2 6.2 1.1 9.2 0.8 2.2 2 0 0 2 2 2 0 Zinc knuckle AGOG PF09171.10 gi|325969490|ref|YP_004245682.1| - 0.00041 19.7 0.1 0.00066 19.1 0.1 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase EndIII_4Fe-2S PF10576.9 gi|325969490|ref|YP_004245682.1| - 0.068 13.5 6.2 0.11 12.9 6.2 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III DUF2400 PF09674.10 gi|325969490|ref|YP_004245682.1| - 0.11 12.5 0.1 0.26 11.3 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2400) DUF711 PF05167.12 gi|325969491|ref|YP_004245683.1| - 2.5e-35 122.1 0.0 9.6e-35 120.2 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised ACR (DUF711) PNP_UDP_1 PF01048.20 gi|325969492|ref|YP_004245684.1| - 4.9e-35 120.9 0.1 5.9e-35 120.6 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Polbeta PF18765.1 gi|325969493|ref|YP_004245685.1| - 9.8e-21 73.7 0.0 1.3e-20 73.2 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|325969493|ref|YP_004245685.1| - 5.8e-09 36.1 0.1 8.8e-09 35.5 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Thg1 PF04446.12 gi|325969496|ref|YP_004245688.1| - 2.6e-17 63.0 0.0 4.2e-17 62.3 0.0 1.4 1 1 0 1 1 1 1 tRNAHis guanylyltransferase TENA_THI-4 PF03070.16 gi|325969497|ref|YP_004245689.1| - 9.8e-28 97.4 0.8 1.2e-27 97.1 0.8 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family adh_short PF00106.25 gi|325969498|ref|YP_004245690.1| - 5.2e-19 68.5 0.0 7e-19 68.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|325969498|ref|YP_004245690.1| - 1.1e-11 44.7 0.0 1.3e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase DUF1776 PF08643.10 gi|325969498|ref|YP_004245690.1| - 0.16 11.3 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) adh_short PF00106.25 gi|325969499|ref|YP_004245691.1| - 1e-18 67.5 0.0 1.1e-18 67.4 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|325969499|ref|YP_004245691.1| - 3.4e-09 36.6 0.0 3.8e-09 36.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|325969499|ref|YP_004245691.1| - 2e-07 31.1 0.1 2.6e-07 30.7 0.1 1.0 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|325969499|ref|YP_004245691.1| - 0.00047 19.7 0.0 0.0005 19.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Ribosomal_L26 PF16906.5 gi|325969499|ref|YP_004245691.1| - 0.0018 18.7 0.0 0.0021 18.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal Polysacc_synt_2 PF02719.15 gi|325969499|ref|YP_004245691.1| - 0.024 13.8 0.0 0.026 13.6 0.0 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|325969499|ref|YP_004245691.1| - 0.051 12.7 0.0 0.059 12.5 0.0 1.1 1 0 0 1 1 1 0 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|325969499|ref|YP_004245691.1| - 0.055 12.9 0.0 0.064 12.7 0.0 1.0 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|325969499|ref|YP_004245691.1| - 0.058 13.3 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding HSBP1 PF06825.12 gi|325969500|ref|YP_004245692.1| - 1.3e-05 24.9 12.3 0.088 12.7 0.9 4.0 1 1 2 3 3 3 3 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.12 gi|325969500|ref|YP_004245692.1| - 0.00071 19.6 0.2 0.001 19.1 0.2 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus LPP PF04728.13 gi|325969500|ref|YP_004245692.1| - 0.001 19.4 0.8 0.11 12.8 0.1 2.7 2 1 0 2 2 2 1 Lipoprotein leucine-zipper NPV_P10 PF05531.12 gi|325969500|ref|YP_004245692.1| - 0.0011 19.4 0.7 0.046 14.2 0.7 2.4 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein UPF0128 PF03673.13 gi|325969500|ref|YP_004245692.1| - 0.0013 18.3 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0128) DUF16 PF01519.16 gi|325969500|ref|YP_004245692.1| - 0.0015 18.9 0.3 0.002 18.6 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|325969500|ref|YP_004245692.1| - 0.0053 17.0 0.6 0.0096 16.2 0.2 1.6 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 CdvA PF18822.1 gi|325969500|ref|YP_004245692.1| - 0.0062 16.3 0.6 0.013 15.4 0.4 1.6 1 1 0 1 1 1 1 CdvA-like coiled-coil domain FlaC_arch PF05377.11 gi|325969500|ref|YP_004245692.1| - 0.0065 16.8 1.1 0.18 12.2 1.1 2.6 1 1 0 1 1 1 1 Flagella accessory protein C (FlaC) YvrJ PF12841.7 gi|325969500|ref|YP_004245692.1| - 0.008 15.7 3.8 2.7 7.6 0.0 3.4 1 1 2 3 3 3 1 YvrJ protein family TraF_2 PF13729.6 gi|325969500|ref|YP_004245692.1| - 0.016 14.6 2.2 0.036 13.4 2.2 1.6 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein Spc29 PF17082.5 gi|325969500|ref|YP_004245692.1| - 0.021 14.7 0.5 0.025 14.4 0.5 1.1 1 0 0 1 1 1 0 Spindle Pole Component 29 DUF1664 PF07889.12 gi|325969500|ref|YP_004245692.1| - 0.025 14.6 0.4 0.079 13.0 0.4 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Hemagglutinin PF00509.18 gi|325969500|ref|YP_004245692.1| - 0.031 12.7 0.8 0.035 12.5 0.8 1.1 1 0 0 1 1 1 0 Haemagglutinin MIP-T3_C PF17749.1 gi|325969500|ref|YP_004245692.1| - 0.052 13.5 1.3 0.077 13.0 1.3 1.3 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 C-terminal region CLZ PF16526.5 gi|325969500|ref|YP_004245692.1| - 0.053 13.9 0.5 6.3 7.2 0.4 2.2 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PhaP_Bmeg PF09602.10 gi|325969500|ref|YP_004245692.1| - 0.053 13.5 0.1 0.066 13.2 0.1 1.1 1 0 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) HCMV_UL139 PF12507.8 gi|325969500|ref|YP_004245692.1| - 0.071 13.5 0.1 0.16 12.4 0.1 1.6 1 1 0 1 1 1 0 Human Cytomegalovirus UL139 protein CagA PF03507.13 gi|325969500|ref|YP_004245692.1| - 0.077 12.9 0.1 0.099 12.6 0.1 1.3 1 0 0 1 1 1 0 CagA exotoxin JIP_LZII PF16471.5 gi|325969500|ref|YP_004245692.1| - 0.092 12.9 2.5 3 8.1 0.1 2.4 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II DUF1515 PF07439.11 gi|325969500|ref|YP_004245692.1| - 0.13 12.3 1.6 7.4 6.7 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) DASH_Dam1 PF08653.10 gi|325969500|ref|YP_004245692.1| - 0.13 12.1 0.3 3.1 7.7 0.1 2.4 1 1 1 2 2 2 0 DASH complex subunit Dam1 DUF3921 PF13060.6 gi|325969500|ref|YP_004245692.1| - 0.19 11.8 1.5 4.7 7.3 0.3 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3921) MtrG PF04210.13 gi|325969500|ref|YP_004245692.1| - 0.21 11.5 1.0 7.7 6.5 0.3 2.8 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4988 PF16378.5 gi|325969500|ref|YP_004245692.1| - 0.21 11.3 1.8 11 5.6 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function Fib_alpha PF08702.10 gi|325969500|ref|YP_004245692.1| - 0.21 11.8 1.2 11 6.2 0.3 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family UPF0184 PF03670.13 gi|325969500|ref|YP_004245692.1| - 1.5 9.3 4.1 53 4.3 3.6 2.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0184) PS_Dcarbxylase PF02666.15 gi|325969501|ref|YP_004245693.1| - 0.02 14.5 0.2 0.034 13.7 0.2 1.3 1 0 0 1 1 1 0 Phosphatidylserine decarboxylase DUF3211 PF11485.8 gi|325969501|ref|YP_004245693.1| - 0.52 10.5 4.3 0.92 9.7 0.3 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF3211) NTP_transf_2 PF01909.23 gi|325969502|ref|YP_004245694.1| - 0.12 12.6 0.1 0.15 12.4 0.1 1.5 1 1 0 1 1 1 0 Nucleotidyltransferase domain Vut_1 PF02592.15 gi|325969503|ref|YP_004245695.1| - 1.4e-23 83.8 14.2 1.4e-23 83.8 14.2 1.8 2 0 0 2 2 2 1 Putative vitamin uptake transporter Lactamase_B PF00753.27 gi|325969505|ref|YP_004245697.1| - 1.5e-29 103.5 1.3 1.8e-29 103.2 1.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|325969505|ref|YP_004245697.1| - 0.036 13.6 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|325969505|ref|YP_004245697.1| - 0.092 12.6 0.0 0.16 11.8 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain eIF2A PF08662.11 gi|325969506|ref|YP_004245698.1| - 0.12 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor eIF2A 5-FTHF_cyc-lig PF01812.20 gi|325969507|ref|YP_004245699.1| - 2.6e-30 105.7 0.0 3.1e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Apolipoprotein PF01442.18 gi|325969508|ref|YP_004245700.1| - 2e-06 27.9 0.5 3.6e-06 27.0 0.5 1.4 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain HSBP1 PF06825.12 gi|325969508|ref|YP_004245700.1| - 1.3e-05 24.9 9.2 0.66 9.9 0.1 4.7 2 2 2 4 4 4 2 Heat shock factor binding protein 1 Baculo_PEP_C PF04513.12 gi|325969508|ref|YP_004245700.1| - 1.8e-05 24.8 1.2 0.051 13.6 0.0 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|325969508|ref|YP_004245700.1| - 2.1e-05 24.5 1.5 0.054 13.5 0.0 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) CdvA PF18822.1 gi|325969508|ref|YP_004245700.1| - 0.00014 21.7 7.9 0.18 11.6 0.2 3.2 1 1 2 3 3 3 2 CdvA-like coiled-coil domain DUF4795 PF16043.5 gi|325969508|ref|YP_004245700.1| - 0.00046 19.9 1.9 0.0014 18.2 1.3 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4795) HalX PF08663.10 gi|325969508|ref|YP_004245700.1| - 0.00051 20.3 3.5 0.049 13.9 0.2 2.6 1 1 1 3 3 3 1 HalX domain NPV_P10 PF05531.12 gi|325969508|ref|YP_004245700.1| - 0.00065 20.1 2.0 0.3 11.6 0.1 3.2 2 1 2 4 4 3 1 Nucleopolyhedrovirus P10 protein TMF_TATA_bd PF12325.8 gi|325969508|ref|YP_004245700.1| - 0.0011 19.2 3.5 0.015 15.5 3.3 2.3 1 1 0 1 1 1 1 TATA element modulatory factor 1 TATA binding DUF4407 PF14362.6 gi|325969508|ref|YP_004245700.1| - 0.0012 18.3 0.2 0.0014 18.1 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) DUF2120 PF09893.9 gi|325969508|ref|YP_004245700.1| - 0.0014 18.7 3.1 0.39 10.8 3.1 2.2 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2120) SHE3 PF17078.5 gi|325969508|ref|YP_004245700.1| - 0.0015 18.3 4.7 0.0028 17.4 4.2 1.6 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 OrfB_IS605 PF01385.19 gi|325969508|ref|YP_004245700.1| - 0.0016 18.7 0.4 0.025 14.8 0.0 2.2 1 1 1 2 2 2 1 Probable transposase AAA_13 PF13166.6 gi|325969508|ref|YP_004245700.1| - 0.0018 17.0 0.9 0.0022 16.7 0.9 1.1 1 0 0 1 1 1 1 AAA domain Tropomyosin_1 PF12718.7 gi|325969508|ref|YP_004245700.1| - 0.002 18.3 4.4 0.21 11.7 0.8 2.5 1 1 1 2 2 2 1 Tropomyosin like Matrilin_ccoil PF10393.9 gi|325969508|ref|YP_004245700.1| - 0.0031 17.3 1.5 0.097 12.5 0.0 3.4 3 1 0 3 3 3 1 Trimeric coiled-coil oligomerisation domain of matrilin Fzo_mitofusin PF04799.13 gi|325969508|ref|YP_004245700.1| - 0.0042 16.6 0.6 1.1 8.8 0.5 2.4 1 1 1 2 2 2 1 fzo-like conserved region DUF2884 PF11101.8 gi|325969508|ref|YP_004245700.1| - 0.0073 15.8 0.2 1.4 8.4 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2884) FliD_C PF07195.12 gi|325969508|ref|YP_004245700.1| - 0.0085 15.5 1.5 1.7 8.0 0.1 2.4 1 1 2 3 3 3 1 Flagellar hook-associated protein 2 C-terminus DUF5098 PF17023.5 gi|325969508|ref|YP_004245700.1| - 0.014 14.4 3.2 1.2 8.0 1.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5098) ABC_tran_CTD PF16326.5 gi|325969508|ref|YP_004245700.1| - 0.014 15.6 1.7 1.9 8.8 0.9 2.7 1 1 1 2 2 2 0 ABC transporter C-terminal domain Phage_Mu_Gam PF07352.12 gi|325969508|ref|YP_004245700.1| - 0.016 15.2 1.7 3.3 7.6 0.0 2.5 1 1 2 3 3 3 0 Bacteriophage Mu Gam like protein SbsC_C PF18058.1 gi|325969508|ref|YP_004245700.1| - 0.017 15.3 0.5 0.37 11.0 0.3 2.6 1 1 1 2 2 2 0 SbsC C-terminal domain OmpH PF03938.14 gi|325969508|ref|YP_004245700.1| - 0.019 15.3 0.2 0.076 13.3 0.2 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF16 PF01519.16 gi|325969508|ref|YP_004245700.1| - 0.026 15.0 1.5 1.7 9.2 1.3 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF948 PF06103.11 gi|325969508|ref|YP_004245700.1| - 0.031 14.5 0.4 2 8.7 0.4 2.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|325969508|ref|YP_004245700.1| - 0.033 13.1 1.7 0.046 12.6 1.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DASH_Spc19 PF08287.11 gi|325969508|ref|YP_004245700.1| - 0.038 13.9 3.2 0.96 9.3 0.5 2.6 1 1 1 2 2 2 0 Spc19 DUF3450 PF11932.8 gi|325969508|ref|YP_004245700.1| - 0.042 13.1 1.3 0.24 10.7 1.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF1351 PF07083.11 gi|325969508|ref|YP_004245700.1| - 0.047 13.5 3.2 0.27 11.0 3.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1351) DUF4351 PF14261.6 gi|325969508|ref|YP_004245700.1| - 0.047 13.8 0.1 7.4 6.7 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4351) Nup54 PF13874.6 gi|325969508|ref|YP_004245700.1| - 0.047 13.8 0.7 0.17 12.0 0.6 1.9 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF2408 PF10303.9 gi|325969508|ref|YP_004245700.1| - 0.053 14.1 1.2 0.12 12.9 1.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) PIN_8 PF18476.1 gi|325969508|ref|YP_004245700.1| - 0.058 13.2 2.0 0.088 12.7 2.0 1.4 1 1 0 1 1 1 0 PIN like domain CLZ PF16526.5 gi|325969508|ref|YP_004245700.1| - 0.063 13.6 4.2 1.4 9.3 0.4 3.1 1 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CorA PF01544.18 gi|325969508|ref|YP_004245700.1| - 0.066 12.5 6.1 0.28 10.5 6.1 1.9 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Spectrin PF00435.21 gi|325969508|ref|YP_004245700.1| - 0.077 13.5 0.3 21 5.7 0.0 2.5 1 1 0 2 2 2 0 Spectrin repeat Hemagglutinin PF00509.18 gi|325969508|ref|YP_004245700.1| - 0.085 11.2 4.9 0.59 8.5 1.7 2.0 1 1 1 2 2 2 0 Haemagglutinin Trimer_CC PF08954.11 gi|325969508|ref|YP_004245700.1| - 0.14 11.7 0.7 3.9 7.1 0.1 3.1 2 2 1 3 3 3 0 Trimerisation motif HTH_1 PF00126.27 gi|325969508|ref|YP_004245700.1| - 0.14 12.1 0.1 5.7 7.0 0.0 2.8 2 2 1 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family ZapA PF05164.13 gi|325969508|ref|YP_004245700.1| - 0.14 12.6 4.2 0.28 11.6 1.4 2.4 1 1 0 2 2 2 0 Cell division protein ZapA V_ATPase_I PF01496.19 gi|325969508|ref|YP_004245700.1| - 0.2 9.5 0.4 0.24 9.3 0.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Syntaxin_2 PF14523.6 gi|325969508|ref|YP_004245700.1| - 0.29 11.5 3.5 5 7.6 3.4 2.3 1 1 0 1 1 1 0 Syntaxin-like protein Fib_alpha PF08702.10 gi|325969508|ref|YP_004245700.1| - 0.4 10.9 1.7 2 8.6 1.4 2.0 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4164 PF13747.6 gi|325969508|ref|YP_004245700.1| - 0.41 11.0 9.0 0.38 11.1 2.1 3.2 2 1 1 3 3 2 0 Domain of unknown function (DUF4164) DUF1640 PF07798.11 gi|325969508|ref|YP_004245700.1| - 0.56 10.2 5.5 25 4.9 4.8 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) MtrG PF04210.13 gi|325969508|ref|YP_004245700.1| - 0.71 9.8 4.1 14 5.6 0.0 3.9 2 1 3 5 5 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G Vut_1 PF02592.15 gi|325969509|ref|YP_004245701.1| - 5.4e-24 85.2 10.7 5.4e-24 85.2 10.7 1.6 2 0 0 2 2 2 1 Putative vitamin uptake transporter Gate PF07670.14 gi|325969509|ref|YP_004245701.1| - 2 8.7 8.2 0.55 10.5 0.4 2.4 2 1 0 2 2 2 0 Nucleoside recognition TPR_1 PF00515.28 gi|325969511|ref|YP_004245703.1| - 0.00071 19.3 1.9 0.051 13.4 0.0 4.1 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_2 PF07719.17 gi|325969511|ref|YP_004245703.1| - 0.0009 19.2 0.0 16 5.9 0.0 5.3 6 1 0 6 6 6 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|325969511|ref|YP_004245703.1| - 0.001 19.3 1.9 1.2 9.5 0.2 4.7 3 2 1 5 5 5 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|325969511|ref|YP_004245703.1| - 0.0023 17.8 0.4 3.1 8.0 0.1 3.7 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|325969511|ref|YP_004245703.1| - 0.0024 17.9 1.5 1.1 9.7 0.1 4.3 4 1 1 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.6 gi|325969511|ref|YP_004245703.1| - 0.0039 17.7 0.1 8.2 7.0 0.0 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_14 PF13428.6 gi|325969511|ref|YP_004245703.1| - 0.0043 17.8 0.4 75 4.5 0.1 5.4 4 2 2 6 6 6 0 Tetratricopeptide repeat RPN7 PF10602.9 gi|325969511|ref|YP_004245703.1| - 0.048 13.4 2.2 8.7 6.0 0.1 3.6 4 0 0 4 4 4 0 26S proteasome subunit RPN7 TPR_10 PF13374.6 gi|325969511|ref|YP_004245703.1| - 0.35 10.8 4.0 3.9 7.5 0.1 3.9 4 1 1 5 5 5 0 Tetratricopeptide repeat PaREP1 PF05942.11 gi|325969513|ref|YP_004245705.1| - 1.3e-21 76.7 0.0 1.6e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Fer4_10 PF13237.6 gi|325969515|ref|YP_004245707.1| - 6.7e-05 22.9 2.5 9.8e-05 22.4 2.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325969515|ref|YP_004245707.1| - 0.011 16.4 5.5 0.61 10.7 7.4 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|325969515|ref|YP_004245707.1| - 0.033 14.3 2.8 0.063 13.4 2.8 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325969515|ref|YP_004245707.1| - 0.19 11.9 9.2 0.11 12.6 3.7 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|325969515|ref|YP_004245707.1| - 0.23 11.3 3.3 0.19 11.5 2.2 1.5 1 1 0 1 1 1 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4 PF00037.27 gi|325969515|ref|YP_004245707.1| - 0.24 11.3 8.0 2.7 7.9 0.5 3.6 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325969515|ref|YP_004245707.1| - 0.6 10.3 6.7 0.74 10.0 3.6 2.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325969515|ref|YP_004245707.1| - 7.2 7.4 8.8 1.1 9.9 3.3 2.2 3 0 0 3 3 3 0 4Fe-4S binding domain AhpC-TSA PF00578.21 gi|325969516|ref|YP_004245708.1| - 2.9e-37 127.4 0.0 3.5e-37 127.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|325969516|ref|YP_004245708.1| - 3.3e-21 75.6 0.0 3.8e-21 75.3 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|325969516|ref|YP_004245708.1| - 0.0011 18.8 0.0 0.0028 17.5 0.0 1.7 1 1 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 gi|325969516|ref|YP_004245708.1| - 0.015 14.9 0.0 0.036 13.6 0.0 1.6 1 1 0 1 1 1 0 Glutathione peroxidase Creatininase PF02633.14 gi|325969517|ref|YP_004245709.1| - 1.3e-61 208.2 0.0 1.4e-61 208.0 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF86 PF01934.17 gi|325969518|ref|YP_004245710.1| - 9.2e-17 61.0 0.0 1.1e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|325969519|ref|YP_004245711.1| - 3.9e-07 30.1 0.1 5.4e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase EamA PF00892.20 gi|325969522|ref|YP_004245714.1| - 1.9e-34 118.8 35.4 4.5e-17 62.5 17.3 2.2 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|325969522|ref|YP_004245714.1| - 0.011 15.1 16.1 0.016 14.5 16.1 1.3 1 0 0 1 1 1 0 Triose-phosphate Transporter family Pilin_N PF07790.11 gi|325969523|ref|YP_004245715.1| - 0.13 13.2 3.1 0.25 12.3 3.1 1.5 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Vpu PF00558.19 gi|325969523|ref|YP_004245715.1| - 0.26 11.1 2.9 0.45 10.3 2.9 1.3 1 0 0 1 1 1 0 Vpu protein PIN PF01850.21 gi|325969525|ref|YP_004245717.1| - 7.6e-06 26.4 0.1 9.1e-06 26.2 0.1 1.1 1 0 0 1 1 1 1 PIN domain 5-FTHF_cyc-lig PF01812.20 gi|325969526|ref|YP_004245718.1| - 3.6e-30 105.2 0.0 4.4e-30 104.9 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family eIF2A PF08662.11 gi|325969527|ref|YP_004245719.1| - 0.12 12.3 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic translation initiation factor eIF2A Piezo_RRas_bdg PF12166.8 gi|325969528|ref|YP_004245720.1| - 0.27 10.5 1.6 0.48 9.6 1.6 1.4 1 0 0 1 1 1 0 Piezo non-specific cation channel, R-Ras-binding domain DUF2418 PF10332.9 gi|325969528|ref|YP_004245720.1| - 5.9 7.5 7.6 1.6 9.3 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) TPPK_C PF12555.8 gi|325969530|ref|YP_004245722.1| - 0.19 11.8 0.4 0.19 11.8 0.4 2.9 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal MFS_1 PF07690.16 gi|325969531|ref|YP_004245723.1| - 8.2e-33 113.8 57.6 2.7e-26 92.3 33.4 3.1 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|325969531|ref|YP_004245723.1| - 4.8e-06 25.6 3.7 4.8e-06 25.6 3.7 2.2 1 1 1 2 2 2 2 LacY proton/sugar symporter MFS_3 PF05977.13 gi|325969531|ref|YP_004245723.1| - 0.0003 19.3 14.8 0.0004 18.9 14.8 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|325969531|ref|YP_004245723.1| - 0.0082 15.1 18.8 0.062 12.2 2.6 3.3 2 1 1 3 3 3 2 Sugar (and other) transporter HEV_ORF1 PF02444.16 gi|325969531|ref|YP_004245723.1| - 0.052 14.1 1.1 0.087 13.4 0.1 1.9 2 0 0 2 2 2 0 Hepatitis E virus ORF-2 (Putative capsid protein) Arg_repressor_C PF02863.18 gi|325969531|ref|YP_004245723.1| - 0.12 12.2 0.5 0.69 9.8 0.0 2.5 4 0 0 4 4 4 0 Arginine repressor, C-terminal domain Hydantoinase_B PF02538.14 gi|325969532|ref|YP_004245724.1| - 5.5e-191 635.5 0.7 6.1e-191 635.3 0.7 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase NTP_transf_2 PF01909.23 gi|325969533|ref|YP_004245725.1| - 3.4e-10 40.1 0.0 4.2e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|325969533|ref|YP_004245725.1| - 6.2e-06 26.2 0.1 8.5e-06 25.8 0.1 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|325969533|ref|YP_004245725.1| - 0.054 13.7 0.0 0.069 13.4 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm TrmB PF01978.19 gi|325969534|ref|YP_004245726.1| - 5.6e-05 22.9 0.1 0.12 12.3 0.0 4.1 2 2 2 4 4 4 1 Sugar-specific transcriptional regulator TrmB Apolipoprotein PF01442.18 gi|325969534|ref|YP_004245726.1| - 0.00012 22.0 0.3 0.00084 19.3 0.0 2.3 2 0 0 2 2 2 1 Apolipoprotein A1/A4/E domain AAA_16 PF13191.6 gi|325969534|ref|YP_004245726.1| - 0.00025 21.5 0.4 0.1 12.9 0.0 3.7 2 2 1 3 3 3 1 AAA ATPase domain Baculo_PEP_C PF04513.12 gi|325969534|ref|YP_004245726.1| - 0.00094 19.2 21.5 0.0034 17.4 6.0 4.0 2 1 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2791 PF10923.8 gi|325969534|ref|YP_004245726.1| - 0.0018 17.2 0.3 0.031 13.1 0.0 3.0 3 0 0 3 3 3 1 P-loop Domain of unknown function (DUF2791) DUF815 PF05673.13 gi|325969534|ref|YP_004245726.1| - 0.0032 16.7 0.3 0.061 12.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Spc7 PF08317.11 gi|325969534|ref|YP_004245726.1| - 0.0043 16.0 3.1 0.005 15.8 0.4 2.1 2 0 0 2 2 2 1 Spc7 kinetochore protein HTH_24 PF13412.6 gi|325969534|ref|YP_004245726.1| - 0.0054 16.3 0.0 0.29 10.7 0.0 2.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF948 PF06103.11 gi|325969534|ref|YP_004245726.1| - 0.0071 16.6 1.9 17 5.7 1.8 3.9 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF2250 PF10007.9 gi|325969534|ref|YP_004245726.1| - 0.011 15.8 0.0 1.5 9.0 0.0 2.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) APG17 PF04108.12 gi|325969534|ref|YP_004245726.1| - 0.015 14.4 2.7 1.4 7.9 0.1 2.9 1 1 1 2 2 2 0 Autophagy protein Apg17 AAA_29 PF13555.6 gi|325969534|ref|YP_004245726.1| - 0.019 14.7 0.0 0.05 13.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain EzrA PF06160.12 gi|325969534|ref|YP_004245726.1| - 0.024 12.9 6.3 0.049 11.8 6.3 1.5 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA MarR_2 PF12802.7 gi|325969534|ref|YP_004245726.1| - 0.038 13.9 0.0 19 5.2 0.0 3.5 2 1 1 3 3 3 0 MarR family DUF1351 PF07083.11 gi|325969534|ref|YP_004245726.1| - 0.044 13.5 0.5 0.54 10.0 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1351) HTH_45 PF14947.6 gi|325969534|ref|YP_004245726.1| - 0.051 13.6 0.4 18 5.4 0.0 3.4 3 0 0 3 3 2 0 Winged helix-turn-helix Prominin PF05478.11 gi|325969534|ref|YP_004245726.1| - 0.071 11.1 3.9 0.08 10.9 2.5 1.6 1 1 0 1 1 1 0 Prominin ApoLp-III PF07464.11 gi|325969534|ref|YP_004245726.1| - 0.14 12.2 0.3 1 9.5 0.4 2.4 2 1 0 2 2 1 0 Apolipophorin-III precursor (apoLp-III) MAP65_ASE1 PF03999.12 gi|325969534|ref|YP_004245726.1| - 0.23 10.1 4.5 0.48 9.1 4.5 1.6 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) HisKA PF00512.25 gi|325969534|ref|YP_004245726.1| - 0.26 11.4 5.8 0.57 10.3 0.4 4.1 4 0 0 4 4 3 0 His Kinase A (phospho-acceptor) domain DUF4795 PF16043.5 gi|325969534|ref|YP_004245726.1| - 0.3 10.6 6.1 0.15 11.7 2.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) DUF5082 PF16888.5 gi|325969534|ref|YP_004245726.1| - 0.33 11.2 4.4 13 6.1 0.3 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) Dynactin_p22 PF07426.11 gi|325969534|ref|YP_004245726.1| - 0.39 10.6 8.6 5.4 6.9 3.2 3.1 1 1 1 2 2 2 0 Dynactin subunit p22 AAA_13 PF13166.6 gi|325969534|ref|YP_004245726.1| - 0.42 9.2 3.8 0.36 9.4 1.8 1.7 1 1 0 1 1 1 0 AAA domain Fib_alpha PF08702.10 gi|325969534|ref|YP_004245726.1| - 0.69 10.1 4.5 1.4 9.1 0.9 2.6 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DegQ PF08181.11 gi|325969534|ref|YP_004245726.1| - 2.3 8.4 5.4 32 4.7 0.4 3.0 2 0 0 2 2 2 0 DegQ (SacQ) family COG2 PF06148.11 gi|325969534|ref|YP_004245726.1| - 3.4 7.7 11.9 2 8.5 0.3 4.4 3 1 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 CdvA PF18822.1 gi|325969534|ref|YP_004245726.1| - 5.8 6.8 7.6 22 4.9 3.6 3.7 2 1 0 2 2 2 0 CdvA-like coiled-coil domain SF-assemblin PF06705.11 gi|325969534|ref|YP_004245726.1| - 8.1 5.7 10.6 1.4 8.2 6.0 2.1 2 1 0 2 2 2 0 SF-assemblin/beta giardin SHE3 PF17078.5 gi|325969534|ref|YP_004245726.1| - 8.1 6.1 11.2 5.3 6.7 4.5 2.9 2 1 0 2 2 2 0 SWI5-dependent HO expression protein 3 HBD PF18534.1 gi|325969534|ref|YP_004245726.1| - 8.1 6.7 9.6 5.1 7.3 0.1 4.9 6 0 0 6 6 5 0 Helical bundle domain NurA PF09376.10 gi|325969536|ref|YP_004245728.1| - 8.8e-06 25.6 0.7 3.7e-05 23.6 0.7 1.8 1 1 0 1 1 1 1 NurA domain Rcd1 PF04078.13 gi|325969537|ref|YP_004245729.1| - 0.0091 15.3 0.1 0.011 15.1 0.1 1.2 1 0 0 1 1 1 1 Cell differentiation family, Rcd1-like DUF99 PF01949.16 gi|325969539|ref|YP_004245731.1| - 1e-61 207.5 0.0 1.2e-61 207.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 HTH_29 PF13551.6 gi|325969539|ref|YP_004245731.1| - 0.042 13.9 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix DUF4418 PF14387.6 gi|325969540|ref|YP_004245732.1| - 0.73 10.1 3.6 0.25 11.6 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4418) DUF5637 PF18687.1 gi|325969541|ref|YP_004245733.1| - 0.049 13.6 1.9 0.14 12.1 0.9 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5637) DHDPS PF00701.22 gi|325969542|ref|YP_004245734.1| - 2.7e-47 160.9 0.0 3.2e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HALZ PF02183.18 gi|325969542|ref|YP_004245734.1| - 0.04 14.1 1.5 9.8 6.5 0.1 3.7 4 0 0 4 4 4 0 Homeobox associated leucine zipper SMC_N PF02463.19 gi|325969543|ref|YP_004245735.1| - 1.2e-17 64.1 0.0 8.3e-17 61.4 0.0 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|325969543|ref|YP_004245735.1| - 2.8e-16 60.6 11.9 2.8e-16 60.6 11.9 4.8 1 1 3 4 4 3 1 AAA domain AAA_13 PF13166.6 gi|325969543|ref|YP_004245735.1| - 6.8e-09 34.9 36.8 0.004 15.9 7.9 4.7 3 1 1 4 4 4 3 AAA domain AAA_15 PF13175.6 gi|325969543|ref|YP_004245735.1| - 8.7e-08 32.3 31.5 0.42 10.3 31.5 4.4 1 1 0 1 1 1 1 AAA ATPase domain Spc7 PF08317.11 gi|325969543|ref|YP_004245735.1| - 3.4e-05 22.9 37.5 0.0021 17.0 2.4 3.8 2 2 0 3 3 3 2 Spc7 kinetochore protein AAA_21 PF13304.6 gi|325969543|ref|YP_004245735.1| - 4.7e-05 23.4 18.8 6.3e-05 22.9 3.9 4.1 3 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF1664 PF07889.12 gi|325969543|ref|YP_004245735.1| - 5.2e-05 23.3 20.7 0.26 11.3 0.5 6.7 3 2 4 7 7 7 2 Protein of unknown function (DUF1664) Rad50_zn_hook PF04423.14 gi|325969543|ref|YP_004245735.1| - 0.00013 21.8 12.7 0.00014 21.6 1.6 4.8 3 0 0 3 3 3 1 Rad50 zinc hook motif NADH-G_4Fe-4S_3 PF10588.9 gi|325969543|ref|YP_004245735.1| - 0.00038 19.9 0.2 0.00093 18.7 0.2 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GAS PF13851.6 gi|325969543|ref|YP_004245735.1| - 0.00088 18.7 36.9 0.091 12.1 5.3 5.1 1 1 4 6 6 6 4 Growth-arrest specific micro-tubule binding AAA_29 PF13555.6 gi|325969543|ref|YP_004245735.1| - 0.0012 18.5 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|325969543|ref|YP_004245735.1| - 0.0012 19.3 7.9 2 8.9 0.1 4.5 3 1 0 3 3 3 1 ABC transporter MscS_porin PF12795.7 gi|325969543|ref|YP_004245735.1| - 0.0021 17.7 6.1 0.0021 17.7 6.1 4.7 3 3 2 5 5 5 1 Mechanosensitive ion channel porin domain BLOC1_2 PF10046.9 gi|325969543|ref|YP_004245735.1| - 0.0024 18.2 28.4 1.4 9.3 0.9 6.5 4 2 2 6 6 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 AAA_27 PF13514.6 gi|325969543|ref|YP_004245735.1| - 0.0044 16.6 2.4 0.017 14.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain Baculo_PEP_C PF04513.12 gi|325969543|ref|YP_004245735.1| - 0.0097 16.0 22.4 0.17 11.9 1.5 6.4 2 1 4 7 7 7 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|325969543|ref|YP_004245735.1| - 0.011 16.0 5.8 8.9 6.6 0.9 5.3 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF5082 PF16888.5 gi|325969543|ref|YP_004245735.1| - 0.018 15.3 1.8 0.018 15.3 1.8 6.7 3 2 4 7 7 6 0 Domain of unknown function (DUF5082) COG2 PF06148.11 gi|325969543|ref|YP_004245735.1| - 0.027 14.6 32.2 0.36 10.9 0.0 8.0 4 3 2 7 7 7 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1967 PF09269.11 gi|325969543|ref|YP_004245735.1| - 0.035 14.0 2.2 0.86 9.6 0.1 3.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1967) Sec34 PF04136.15 gi|325969543|ref|YP_004245735.1| - 0.051 13.4 16.0 0.32 10.9 0.8 4.7 3 1 1 4 4 4 0 Sec34-like family NPV_P10 PF05531.12 gi|325969543|ref|YP_004245735.1| - 0.057 13.9 17.9 67 4.0 0.3 7.3 4 3 1 5 5 5 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.13 gi|325969543|ref|YP_004245735.1| - 0.059 14.1 30.4 2.3 9.0 1.9 6.4 2 2 4 6 6 6 0 Occludin homology domain SKA2 PF16740.5 gi|325969543|ref|YP_004245735.1| - 0.067 13.0 16.2 1.9 8.3 0.3 5.4 4 2 0 5 5 5 0 Spindle and kinetochore-associated protein 2 Vps39_2 PF10367.9 gi|325969543|ref|YP_004245735.1| - 0.088 13.3 0.6 20 5.7 0.1 3.2 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 Mut7-C PF01927.16 gi|325969543|ref|YP_004245735.1| - 0.092 12.8 5.2 0.17 12.0 2.4 2.8 1 1 1 2 2 2 0 Mut7-C RNAse domain MCPsignal PF00015.21 gi|325969543|ref|YP_004245735.1| - 0.12 12.2 4.7 0.91 9.3 0.3 4.0 3 1 1 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Pyr_redox PF00070.27 gi|325969543|ref|YP_004245735.1| - 0.18 12.4 2.3 0.43 11.2 0.4 2.7 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase PKHD_C PF18331.1 gi|325969543|ref|YP_004245735.1| - 0.25 11.4 1.4 3.3 7.8 0.0 3.4 3 1 0 3 3 3 0 PKHD-type hydroxylase C-terminal domain AAA_22 PF13401.6 gi|325969543|ref|YP_004245735.1| - 0.26 11.6 0.0 0.26 11.6 0.0 4.0 4 1 1 5 5 3 0 AAA domain MitMem_reg PF13012.6 gi|325969543|ref|YP_004245735.1| - 0.38 11.2 6.3 2.1 8.8 0.3 4.5 2 1 1 4 4 4 0 Maintenance of mitochondrial structure and function Osmo_CC PF08946.10 gi|325969543|ref|YP_004245735.1| - 0.48 10.7 25.2 2.4 8.5 0.1 6.0 4 1 1 5 5 5 0 Osmosensory transporter coiled coil Syntaxin-6_N PF09177.11 gi|325969543|ref|YP_004245735.1| - 0.53 10.9 30.9 1.1 9.8 1.0 5.8 2 2 3 5 5 4 0 Syntaxin 6, N-terminal FUSC PF04632.12 gi|325969543|ref|YP_004245735.1| - 0.54 8.7 6.9 4.5 5.7 0.1 2.9 2 1 0 2 2 2 0 Fusaric acid resistance protein family EzrA PF06160.12 gi|325969543|ref|YP_004245735.1| - 0.6 8.2 44.3 0.39 8.8 26.3 4.3 2 1 0 3 3 3 0 Septation ring formation regulator, EzrA CSN5_C PF18323.1 gi|325969543|ref|YP_004245735.1| - 0.64 11.0 6.1 4.8 8.2 0.3 4.2 3 2 0 3 3 2 0 Cop9 signalosome subunit 5 C-terminal domain STAT_alpha PF01017.20 gi|325969543|ref|YP_004245735.1| - 0.74 9.7 24.9 0.21 11.4 0.9 4.2 2 1 2 4 4 4 0 STAT protein, all-alpha domain Allexi_40kDa PF05549.11 gi|325969543|ref|YP_004245735.1| - 0.96 8.9 17.2 0.56 9.7 1.9 4.4 3 1 1 4 4 4 0 Allexivirus 40kDa protein HSBP1 PF06825.12 gi|325969543|ref|YP_004245735.1| - 0.97 9.3 13.3 2.8 7.8 2.6 4.2 2 1 1 3 3 3 0 Heat shock factor binding protein 1 AAA_16 PF13191.6 gi|325969543|ref|YP_004245735.1| - 1.1 9.6 10.1 2.1 8.7 3.0 4.0 2 2 0 2 2 2 0 AAA ATPase domain DUF16 PF01519.16 gi|325969543|ref|YP_004245735.1| - 2.9 8.4 25.4 1.8 9.1 0.3 5.9 3 1 2 5 5 4 0 Protein of unknown function DUF16 Prominin PF05478.11 gi|325969543|ref|YP_004245735.1| - 3 5.7 20.9 0.18 9.7 1.0 3.3 1 1 1 3 3 3 0 Prominin TMPIT PF07851.13 gi|325969543|ref|YP_004245735.1| - 3.6 6.7 19.3 1.8 7.7 0.7 4.3 2 1 2 4 4 4 0 TMPIT-like protein IZUMO PF15005.6 gi|325969543|ref|YP_004245735.1| - 4.2 7.9 12.3 0.17 12.4 1.8 3.5 2 2 1 3 3 3 0 Izumo sperm-egg fusion, Ig domain-associated Atg14 PF10186.9 gi|325969543|ref|YP_004245735.1| - 4.6 6.2 33.7 0.43 9.6 10.2 3.6 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 MCU PF04678.13 gi|325969543|ref|YP_004245735.1| - 4.6 7.3 12.5 1.8 8.7 0.3 3.7 4 0 0 4 4 3 0 Mitochondrial calcium uniporter KASH_CCD PF14662.6 gi|325969543|ref|YP_004245735.1| - 5.5 6.8 38.1 0.88 9.4 8.1 3.9 2 1 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH TTRAP PF14203.6 gi|325969544|ref|YP_004245736.1| - 0.038 14.0 0.0 0.071 13.1 0.0 1.5 1 1 1 2 2 2 0 Putative tranposon-transfer assisting protein BLOC1_2 PF10046.9 gi|325969545|ref|YP_004245737.1| - 2.8e-05 24.3 0.5 5.4e-05 23.4 0.5 1.4 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|325969545|ref|YP_004245737.1| - 0.00026 21.1 2.1 0.00042 20.4 2.1 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Phasin PF05597.11 gi|325969545|ref|YP_004245737.1| - 0.0012 18.8 0.4 0.0021 18.1 0.4 1.4 1 0 0 1 1 1 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Snapin_Pallidin PF14712.6 gi|325969545|ref|YP_004245737.1| - 0.0018 18.6 1.4 0.0031 17.9 1.4 1.4 1 0 0 1 1 1 1 Snapin/Pallidin ABC_tran_CTD PF16326.5 gi|325969545|ref|YP_004245737.1| - 0.0025 18.1 0.3 0.0052 17.0 0.3 1.5 1 0 0 1 1 1 1 ABC transporter C-terminal domain DUF4988 PF16378.5 gi|325969545|ref|YP_004245737.1| - 0.0034 17.1 4.4 0.07 12.8 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function EzrA PF06160.12 gi|325969545|ref|YP_004245737.1| - 0.0075 14.5 1.8 0.01 14.0 1.8 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Fmp27_WPPW PF10359.9 gi|325969545|ref|YP_004245737.1| - 0.015 14.2 0.2 0.021 13.7 0.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Laminin_II PF06009.12 gi|325969545|ref|YP_004245737.1| - 0.016 15.2 1.5 0.026 14.5 1.5 1.4 1 0 0 1 1 1 0 Laminin Domain II TolA_bind_tri PF16331.5 gi|325969545|ref|YP_004245737.1| - 0.019 15.0 1.5 0.03 14.4 0.5 1.8 1 1 1 2 2 2 0 TolA binding protein trimerisation CdvA PF18822.1 gi|325969545|ref|YP_004245737.1| - 0.021 14.7 1.8 0.083 12.7 1.8 2.0 1 1 0 1 1 1 0 CdvA-like coiled-coil domain Tmemb_cc2 PF10267.9 gi|325969545|ref|YP_004245737.1| - 0.027 13.7 0.4 0.033 13.3 0.4 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein RRN3 PF05327.11 gi|325969545|ref|YP_004245737.1| - 0.03 12.9 0.2 0.041 12.4 0.2 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Allexi_40kDa PF05549.11 gi|325969545|ref|YP_004245737.1| - 0.055 13.0 0.4 0.077 12.5 0.4 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein TBCC_N PF16752.5 gi|325969545|ref|YP_004245737.1| - 0.062 13.7 0.1 0.13 12.7 0.1 1.5 1 1 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain YvrJ PF12841.7 gi|325969545|ref|YP_004245737.1| - 0.067 12.7 2.9 2.2 7.9 0.5 3.6 3 0 0 3 3 3 0 YvrJ protein family DUF1664 PF07889.12 gi|325969545|ref|YP_004245737.1| - 0.072 13.1 1.1 0.12 12.4 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Focal_AT PF03623.13 gi|325969545|ref|YP_004245737.1| - 0.073 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Focal adhesion targeting region Not3 PF04065.15 gi|325969545|ref|YP_004245737.1| - 0.08 12.4 0.2 0.12 11.8 0.2 1.2 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component Syntaxin_2 PF14523.6 gi|325969545|ref|YP_004245737.1| - 0.083 13.3 1.9 0.2 12.0 1.3 1.9 1 1 1 2 2 2 0 Syntaxin-like protein ApoLp-III PF07464.11 gi|325969545|ref|YP_004245737.1| - 0.088 12.9 0.3 0.17 12.0 0.3 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) FlaC_arch PF05377.11 gi|325969545|ref|YP_004245737.1| - 0.11 12.9 3.3 0.17 12.3 2.0 2.1 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Prefoldin PF02996.17 gi|325969545|ref|YP_004245737.1| - 0.12 12.3 0.7 2.3 8.2 0.3 2.9 3 1 0 3 3 3 0 Prefoldin subunit Latarcin PF10279.9 gi|325969545|ref|YP_004245737.1| - 0.22 11.9 2.1 0.53 10.7 2.1 1.6 1 0 0 1 1 1 0 Latarcin precursor HSBP1 PF06825.12 gi|325969545|ref|YP_004245737.1| - 0.24 11.3 3.9 0.3 11.0 0.2 2.8 3 0 0 3 3 3 0 Heat shock factor binding protein 1 NPV_P10 PF05531.12 gi|325969545|ref|YP_004245737.1| - 0.31 11.5 3.7 0.71 10.4 3.7 1.7 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein XhlA PF10779.9 gi|325969545|ref|YP_004245737.1| - 2.1 8.6 5.3 3.7 7.8 0.5 2.4 1 1 1 2 2 2 0 Haemolysin XhlA Actin PF00022.19 gi|325969546|ref|YP_004245738.1| - 4.3e-10 38.8 0.0 1.5e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 Actin Rad10 PF03834.14 gi|325969546|ref|YP_004245738.1| - 0.056 13.5 0.0 0.28 11.2 0.0 2.0 2 0 0 2 2 2 0 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) Cyclophil_like PF04126.13 gi|325969548|ref|YP_004245740.1| - 0.0066 16.3 0.0 0.0097 15.7 0.0 1.3 1 1 0 1 1 1 1 Cyclophilin-like Alba PF01918.21 gi|325969549|ref|YP_004245741.1| - 1.3e-12 47.3 0.3 1.8e-12 46.9 0.3 1.2 1 0 0 1 1 1 1 Alba DUF3894 PF13033.6 gi|325969549|ref|YP_004245741.1| - 0.038 14.1 0.0 0.061 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3894) SchA_CurD PF04486.12 gi|325969549|ref|YP_004245741.1| - 0.096 12.8 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 SchA/CurD like domain ATP_bind_1 PF03029.17 gi|325969550|ref|YP_004245742.1| - 4.2e-14 52.9 0.1 1.8e-08 34.5 0.0 2.4 1 1 1 2 2 2 2 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|325969550|ref|YP_004245742.1| - 1.5e-11 44.0 0.0 3.7e-11 42.8 0.0 1.6 1 1 0 1 1 1 1 ADP-ribosylation factor family Roc PF08477.13 gi|325969550|ref|YP_004245742.1| - 2e-08 34.5 0.0 3.1e-08 33.9 0.0 1.3 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|325969550|ref|YP_004245742.1| - 3e-06 26.8 0.0 4.9e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_24 PF13479.6 gi|325969550|ref|YP_004245742.1| - 0.00016 21.4 0.1 0.00019 21.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|325969550|ref|YP_004245742.1| - 0.00036 20.6 0.0 0.00053 20.1 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|325969550|ref|YP_004245742.1| - 0.0004 20.0 0.0 0.001 18.7 0.0 1.7 1 1 0 1 1 1 1 Ras family GTP_EFTU PF00009.27 gi|325969550|ref|YP_004245742.1| - 0.0008 19.0 0.0 0.0024 17.5 0.0 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain NTPase_1 PF03266.15 gi|325969550|ref|YP_004245742.1| - 0.0022 17.9 0.1 0.034 14.1 0.1 2.3 2 1 0 2 2 2 1 NTPase TsaE PF02367.17 gi|325969550|ref|YP_004245742.1| - 0.0028 17.6 0.0 0.0048 16.9 0.0 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE dNK PF01712.19 gi|325969550|ref|YP_004245742.1| - 0.0047 16.8 0.0 0.007 16.2 0.0 1.3 1 0 0 1 1 1 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|325969550|ref|YP_004245742.1| - 0.0054 17.0 0.0 0.0086 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|325969550|ref|YP_004245742.1| - 0.0072 16.9 0.0 0.011 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|325969550|ref|YP_004245742.1| - 0.0082 16.1 0.0 0.71 9.8 0.0 2.1 2 0 0 2 2 2 1 NACHT domain ABC_tran PF00005.27 gi|325969550|ref|YP_004245742.1| - 0.0093 16.5 0.0 0.016 15.7 0.0 1.3 1 1 0 1 1 1 1 ABC transporter Septin PF00735.18 gi|325969550|ref|YP_004245742.1| - 0.016 14.5 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Septin RsgA_GTPase PF03193.16 gi|325969550|ref|YP_004245742.1| - 0.018 14.9 0.0 0.063 13.2 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase T2SSE PF00437.20 gi|325969550|ref|YP_004245742.1| - 0.037 13.1 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PRK PF00485.18 gi|325969550|ref|YP_004245742.1| - 0.049 13.4 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Mg_chelatase PF01078.21 gi|325969550|ref|YP_004245742.1| - 0.05 13.0 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.6 gi|325969550|ref|YP_004245742.1| - 0.058 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|325969550|ref|YP_004245742.1| - 0.058 13.7 0.0 0.096 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|325969550|ref|YP_004245742.1| - 0.06 13.3 0.0 0.093 12.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Gtr1_RagA PF04670.12 gi|325969550|ref|YP_004245742.1| - 0.061 12.7 0.0 0.095 12.0 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_33 PF13671.6 gi|325969550|ref|YP_004245742.1| - 0.067 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|325969550|ref|YP_004245742.1| - 0.082 12.5 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|325969550|ref|YP_004245742.1| - 0.1 12.3 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Robl_LC7 PF03259.17 gi|325969551|ref|YP_004245743.1| - 0.031 14.0 0.1 0.095 12.5 0.1 1.8 1 1 0 1 1 1 0 Roadblock/LC7 domain Arcadin_1 PF18653.1 gi|325969552|ref|YP_004245744.1| - 3e-33 114.2 0.3 3.3e-33 114.1 0.3 1.0 1 0 0 1 1 1 1 Arcadin 1 Molydop_binding PF01568.21 gi|325969552|ref|YP_004245744.1| - 0.046 13.7 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain RNA_pol_Rpb6 PF01192.22 gi|325969553|ref|YP_004245745.1| - 7.2e-15 54.7 0.1 1.2e-14 53.9 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 Pox_RNA_Pol_19 PF05320.12 gi|325969553|ref|YP_004245745.1| - 0.0062 16.5 0.0 0.0073 16.3 0.0 1.1 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit Cpn60_TCP1 PF00118.24 gi|325969554|ref|YP_004245746.1| - 8.7e-179 595.2 9.3 9.9e-179 595.0 9.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peptidase_S24 PF00717.23 gi|325969555|ref|YP_004245747.1| - 0.00022 21.1 0.0 0.00036 20.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like Acetyltransf_1 PF00583.25 gi|325969556|ref|YP_004245748.1| - 8.5e-15 55.0 0.1 1.1e-14 54.7 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|325969556|ref|YP_004245748.1| - 2e-07 31.3 0.2 3.5e-07 30.5 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|325969556|ref|YP_004245748.1| - 1.6e-05 24.8 0.0 2.7e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|325969556|ref|YP_004245748.1| - 6e-05 23.1 0.1 8.1e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|325969556|ref|YP_004245748.1| - 9.8e-05 22.3 0.0 0.00019 21.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|325969556|ref|YP_004245748.1| - 0.062 13.0 0.0 0.11 12.2 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Complex1_51K PF01512.17 gi|325969556|ref|YP_004245748.1| - 0.067 13.1 0.2 0.11 12.3 0.2 1.3 1 0 0 1 1 1 0 Respiratory-chain NADH dehydrogenase 51 Kd subunit Acetyltransf_3 PF13302.7 gi|325969556|ref|YP_004245748.1| - 0.12 13.1 0.1 0.21 12.3 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PhosphMutase PF10143.9 gi|325969557|ref|YP_004245749.1| - 1.4e-47 161.7 0.0 2e-47 161.2 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|325969557|ref|YP_004245749.1| - 2.7e-36 125.2 0.0 3.1e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|325969557|ref|YP_004245749.1| - 0.008 15.8 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase CutA1 PF03091.15 gi|325969558|ref|YP_004245750.1| - 1.4e-35 121.1 0.0 1.5e-35 121.0 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Pept_S41_N PF18294.1 gi|325969558|ref|YP_004245750.1| - 0.087 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Peptidase S41 N-terminal domain Sulf_coat_C PF12193.8 gi|325969558|ref|YP_004245750.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus virus coat protein C terminal Aldo_ket_red PF00248.21 gi|325969559|ref|YP_004245751.1| - 2e-72 243.8 0.0 2.3e-72 243.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TMP-TENI PF02581.17 gi|325969560|ref|YP_004245752.1| - 1.6e-54 184.0 0.1 1.8e-54 183.8 0.1 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|325969560|ref|YP_004245752.1| - 3e-05 23.6 0.6 4.2e-05 23.1 0.6 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|325969560|ref|YP_004245752.1| - 0.0052 16.1 1.9 0.0069 15.7 0.6 1.7 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|325969560|ref|YP_004245752.1| - 0.065 12.4 0.2 0.58 9.3 0.1 2.1 2 1 1 3 3 3 0 Protein of unknown function (DUF561) MS_channel PF00924.18 gi|325969561|ref|YP_004245753.1| - 8.3e-19 67.9 4.9 8.3e-19 67.9 4.9 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel Tmpp129 PF10272.9 gi|325969561|ref|YP_004245753.1| - 0.16 11.2 2.6 0.23 10.7 2.6 1.1 1 0 0 1 1 1 0 Putative transmembrane protein precursor Zip PF02535.22 gi|325969561|ref|YP_004245753.1| - 2.8 7.1 9.9 0.32 10.2 3.0 2.0 1 1 0 2 2 2 0 ZIP Zinc transporter FtsK_4TM PF13491.6 gi|325969561|ref|YP_004245753.1| - 4.3 7.0 16.7 0.19 11.4 10.5 1.7 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE MMR_HSR1_C PF08438.10 gi|325969562|ref|YP_004245754.1| - 7.8e-36 123.1 0.1 1.2e-35 122.5 0.1 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|325969562|ref|YP_004245754.1| - 7.6e-19 67.9 0.0 2.7e-18 66.1 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|325969562|ref|YP_004245754.1| - 1.1e-07 31.6 0.1 3.6e-05 23.3 0.0 2.5 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.21 gi|325969562|ref|YP_004245754.1| - 2.7e-06 27.3 0.1 5.3e-06 26.4 0.1 1.5 1 0 0 1 1 1 1 TGS domain GTP_EFTU PF00009.27 gi|325969562|ref|YP_004245754.1| - 0.0013 18.3 0.2 0.14 11.7 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain DUF530 PF04409.12 gi|325969562|ref|YP_004245754.1| - 0.087 11.2 0.0 0.12 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF530) tRNA-synt_1d PF00750.19 gi|325969563|ref|YP_004245755.1| - 4.1e-37 127.9 0.0 1.9e-25 89.6 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|325969563|ref|YP_004245755.1| - 4.4e-24 84.9 0.3 2.8e-23 82.3 0.0 2.4 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1f PF01921.18 gi|325969563|ref|YP_004245755.1| - 0.0068 15.4 0.6 0.32 9.9 0.0 2.7 3 1 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|325969563|ref|YP_004245755.1| - 0.021 14.2 0.3 0.22 10.8 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain TetR_C_5 PF08360.11 gi|325969563|ref|YP_004245755.1| - 0.04 14.1 0.1 0.3 11.3 0.1 2.4 2 0 0 2 2 2 0 QacR-like protein, C-terminal region Seryl_tRNA_N PF02403.22 gi|325969563|ref|YP_004245755.1| - 0.059 13.6 0.1 0.13 12.5 0.1 1.6 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain tRNA-synt_1g PF09334.11 gi|325969563|ref|YP_004245755.1| - 0.098 11.4 0.1 6.8 5.3 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class I (M) Fungal_trans_2 PF11951.8 gi|325969563|ref|YP_004245755.1| - 0.21 10.4 0.0 0.34 9.7 0.0 1.2 1 0 0 1 1 1 0 Fungal specific transcription factor domain RNA_pol_Rpb5_C PF01191.19 gi|325969564|ref|YP_004245756.1| - 1.6e-28 98.3 0.0 2.1e-28 98.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.28 gi|325969565|ref|YP_004245757.1| - 4e-131 437.7 0.0 5.6e-131 437.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|325969565|ref|YP_004245757.1| - 2.1e-57 194.0 0.1 3.1e-57 193.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|325969565|ref|YP_004245757.1| - 7.2e-32 110.6 0.0 1.4e-31 109.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|325969565|ref|YP_004245757.1| - 4e-30 104.0 0.0 7.8e-30 103.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|325969565|ref|YP_004245757.1| - 1.5e-27 95.6 0.1 3.3e-27 94.5 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|325969565|ref|YP_004245757.1| - 8.3e-21 74.0 3.9 1.5e-20 73.2 1.2 2.6 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|325969565|ref|YP_004245757.1| - 2.9e-09 37.4 1.5 1.3e-08 35.3 1.5 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|325969566|ref|YP_004245758.1| - 7e-98 327.8 0.0 1e-97 327.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|325969566|ref|YP_004245758.1| - 9.3e-74 247.2 0.0 1.8e-73 246.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|325969566|ref|YP_004245758.1| - 3.5e-33 114.8 0.0 6.4e-33 113.9 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|325969566|ref|YP_004245758.1| - 4.2e-27 95.2 0.1 8.3e-27 94.3 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.17 gi|325969566|ref|YP_004245758.1| - 1.4e-26 92.6 0.0 2.8e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 DpnD-PcfM PF14207.6 gi|325969566|ref|YP_004245758.1| - 0.077 12.9 0.5 0.32 10.9 0.3 2.2 2 0 0 2 2 2 0 DpnD/PcfM-like protein CpXC PF14353.6 gi|325969566|ref|YP_004245758.1| - 0.092 12.8 0.1 1.2 9.2 0.0 2.6 2 0 0 2 2 2 0 CpXC protein DZR PF12773.7 gi|325969566|ref|YP_004245758.1| - 0.11 12.6 1.9 5.1 7.2 1.9 2.3 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|325969566|ref|YP_004245758.1| - 0.35 11.1 6.1 5.4 7.3 0.5 3.6 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|325969566|ref|YP_004245758.1| - 0.79 9.2 5.9 1.1 8.8 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|325969566|ref|YP_004245758.1| - 1.5 9.0 5.3 2.3 8.4 0.0 3.0 3 0 0 3 3 3 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|325969566|ref|YP_004245758.1| - 3.7 8.3 7.2 4.8 7.9 0.2 3.4 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.6 gi|325969566|ref|YP_004245758.1| - 4.2 7.4 8.7 1.7 8.6 0.2 3.2 3 0 0 3 3 3 0 Nudix N-terminal zf-IS66 PF13005.7 gi|325969566|ref|YP_004245758.1| - 5.5 7.5 7.9 30 5.1 0.0 3.9 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 RNA_pol_Rpb1_5 PF04998.17 gi|325969567|ref|YP_004245759.1| - 2.5e-51 174.7 1.6 4.4e-51 173.9 1.6 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Syntaxin-6_N PF09177.11 gi|325969567|ref|YP_004245759.1| - 0.17 12.5 3.4 12 6.5 0.1 2.9 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Ribosomal_L7Ae PF01248.26 gi|325969568|ref|YP_004245760.1| - 1.9e-19 69.2 0.0 2.3e-19 68.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF993 PF06187.11 gi|325969568|ref|YP_004245760.1| - 0.14 11.0 0.1 0.18 10.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF993) KH_2 PF07650.17 gi|325969569|ref|YP_004245761.1| - 6.2e-17 61.2 3.5 3.2e-10 39.7 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|325969569|ref|YP_004245761.1| - 4.8e-12 45.8 1.6 3.1e-11 43.2 0.2 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.29 gi|325969569|ref|YP_004245761.1| - 1.2e-05 25.0 0.9 0.0029 17.4 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|325969569|ref|YP_004245761.1| - 0.0027 17.5 0.2 0.01 15.7 0.0 1.9 2 0 0 2 2 2 1 KH domain Ribosom_S12_S23 PF00164.25 gi|325969570|ref|YP_004245762.1| - 1.2e-42 144.1 0.4 1.5e-42 143.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DUF5456 PF17539.2 gi|325969570|ref|YP_004245762.1| - 0.19 11.6 0.0 0.28 11.1 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5456) DUF4493 PF14900.6 gi|325969571|ref|YP_004245763.1| - 0.038 13.8 0.1 0.053 13.4 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4493) DUF4886 PF16227.5 gi|325969571|ref|YP_004245763.1| - 0.045 12.9 0.0 0.045 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4886) Macro PF01661.21 gi|325969572|ref|YP_004245764.1| - 1.3e-37 128.4 0.0 1.7e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 Macro domain ATPase_2 PF01637.18 gi|325969573|ref|YP_004245765.1| - 1.2e-20 74.4 0.0 2e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|325969573|ref|YP_004245765.1| - 2.9e-09 37.0 0.3 0.00056 19.9 0.1 2.8 2 1 1 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|325969573|ref|YP_004245765.1| - 3.6e-07 30.7 0.0 7.4e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|325969573|ref|YP_004245765.1| - 4.2e-06 27.1 0.0 9.2e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|325969573|ref|YP_004245765.1| - 0.006 15.8 0.0 0.0098 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) CPT PF07931.12 gi|325969573|ref|YP_004245765.1| - 0.058 13.2 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Lant_dehydr_N PF04738.13 gi|325969573|ref|YP_004245765.1| - 0.09 10.9 0.0 0.12 10.5 0.0 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus AAA PF00004.29 gi|325969573|ref|YP_004245765.1| - 0.099 13.1 0.0 0.27 11.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.20 gi|325969573|ref|YP_004245765.1| - 0.14 11.2 0.1 1.3 8.1 0.0 1.9 1 1 0 2 2 2 0 G-protein alpha subunit MFS_1 PF07690.16 gi|325969574|ref|YP_004245766.1| - 3.9e-31 108.3 57.6 4.3e-18 65.4 33.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|325969574|ref|YP_004245766.1| - 5.5e-05 21.9 15.0 5.5e-05 21.9 15.0 2.4 2 1 1 3 3 3 2 MFS/sugar transport protein Tetraspanin PF00335.20 gi|325969574|ref|YP_004245766.1| - 0.058 13.1 0.2 0.058 13.1 0.2 3.3 3 1 1 4 4 4 0 Tetraspanin family DrsE PF02635.15 gi|325969575|ref|YP_004245767.1| - 0.00092 19.6 0.0 0.0013 19.1 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family zf-CDGSH PF09360.10 gi|325969576|ref|YP_004245768.1| - 0.0022 18.2 0.4 0.0047 17.1 0.2 1.6 2 0 0 2 2 2 1 Iron-binding zinc finger CDGSH type PfkB PF00294.24 gi|325969577|ref|YP_004245769.1| - 1.2e-32 113.5 0.0 1.4e-32 113.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Sugar_tr PF00083.24 gi|325969578|ref|YP_004245770.1| - 1e-15 57.6 6.2 1e-15 57.6 6.2 3.0 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|325969578|ref|YP_004245770.1| - 1.1e-10 41.0 51.8 6.2e-05 22.1 21.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily HCV_NS2 PF01538.18 gi|325969578|ref|YP_004245770.1| - 10 5.8 8.3 5.9 6.5 2.4 2.4 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS2 eRF1_3 PF03465.15 gi|325969579|ref|YP_004245771.1| - 5.5e-17 62.3 0.1 3e-16 59.9 0.1 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|325969579|ref|YP_004245771.1| - 5.3e-14 52.3 0.0 9.2e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Auto_anti-p27 PF06677.12 gi|325969580|ref|YP_004245772.1| - 1.8e-13 50.4 1.8 2.6e-13 49.9 1.8 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) GFA PF04828.14 gi|325969580|ref|YP_004245772.1| - 4e-06 27.1 0.1 0.021 15.2 0.0 2.2 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.11 gi|325969580|ref|YP_004245772.1| - 0.00025 20.9 0.1 0.00043 20.1 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|325969580|ref|YP_004245772.1| - 0.0004 20.2 1.1 0.00056 19.8 1.1 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|325969580|ref|YP_004245772.1| - 0.0011 18.4 2.1 0.002 17.6 2.1 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|325969580|ref|YP_004245772.1| - 0.0011 18.9 0.2 0.0017 18.3 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.14 gi|325969580|ref|YP_004245772.1| - 0.0034 17.2 1.2 0.0057 16.5 1.2 1.4 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS Zn-ribbon_8 PF09723.10 gi|325969580|ref|YP_004245772.1| - 0.0072 16.4 0.6 3.6 7.8 0.1 2.4 2 0 0 2 2 2 1 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|325969580|ref|YP_004245772.1| - 0.014 15.5 2.7 0.032 14.2 2.7 1.8 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|325969580|ref|YP_004245772.1| - 0.023 14.0 0.6 0.046 13.1 0.6 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|325969580|ref|YP_004245772.1| - 0.028 14.4 0.1 0.049 13.6 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons A2L_zn_ribbon PF08792.10 gi|325969580|ref|YP_004245772.1| - 0.036 13.8 0.2 0.069 12.9 0.2 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|325969580|ref|YP_004245772.1| - 0.038 14.0 0.1 0.053 13.5 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|325969580|ref|YP_004245772.1| - 0.041 14.2 0.1 3.1 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Nudix_N_2 PF14803.6 gi|325969580|ref|YP_004245772.1| - 0.044 13.7 0.2 3.4 7.7 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal C1_2 PF03107.16 gi|325969580|ref|YP_004245772.1| - 0.045 14.1 0.1 0.071 13.4 0.1 1.3 1 0 0 1 1 1 0 C1 domain DNA_RNApol_7kD PF03604.13 gi|325969580|ref|YP_004245772.1| - 0.053 13.2 1.1 0.84 9.4 0.3 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|325969580|ref|YP_004245772.1| - 0.054 13.2 2.8 0.68 9.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.11 gi|325969580|ref|YP_004245772.1| - 0.054 13.1 1.4 0.73 9.5 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) CpXC PF14353.6 gi|325969580|ref|YP_004245772.1| - 0.082 13.0 0.6 0.13 12.3 0.6 1.5 1 1 0 1 1 1 0 CpXC protein HHH_6 PF14579.6 gi|325969580|ref|YP_004245772.1| - 0.088 13.1 0.1 0.89 9.9 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif zf-ribbon_3 PF13248.6 gi|325969580|ref|YP_004245772.1| - 0.42 10.1 4.1 2.1 7.9 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|325969580|ref|YP_004245772.1| - 0.61 9.7 1.9 5.7 6.6 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_10 PF10058.9 gi|325969580|ref|YP_004245772.1| - 0.86 9.4 3.5 13 5.6 0.1 2.6 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|325969580|ref|YP_004245772.1| - 1.1 9.2 6.4 10 6.1 6.4 2.0 1 1 0 1 1 1 0 HIT zinc finger Aldo_ket_red PF00248.21 gi|325969581|ref|YP_004245773.1| - 1e-60 205.4 0.0 6e-59 199.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DrsE PF02635.15 gi|325969582|ref|YP_004245774.1| - 9.1e-06 26.0 0.0 2e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|325969582|ref|YP_004245774.1| - 0.0027 17.6 0.1 0.086 12.7 0.1 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family TusA PF01206.17 gi|325969583|ref|YP_004245775.1| - 2.1e-23 81.9 0.0 2.4e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Acylphosphatase PF00708.18 gi|325969584|ref|YP_004245776.1| - 1.6e-23 82.9 0.0 4.1e-23 81.6 0.0 1.7 1 0 0 1 1 1 1 Acylphosphatase TusA PF01206.17 gi|325969585|ref|YP_004245777.1| - 5.7e-14 51.7 0.1 6.5e-14 51.5 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|325969585|ref|YP_004245777.1| - 0.0027 17.5 0.0 0.0065 16.3 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) PseudoU_synth_1 PF01416.20 gi|325969586|ref|YP_004245778.1| - 3.2e-15 56.5 0.0 3.6e-14 53.1 0.0 2.1 2 0 0 2 2 2 1 tRNA pseudouridine synthase DOCK_N PF16172.5 gi|325969587|ref|YP_004245779.1| - 0.03 13.2 0.4 0.034 13.1 0.4 1.2 1 0 0 1 1 1 0 DOCK N-terminus MCD_N PF17408.2 gi|325969587|ref|YP_004245779.1| - 0.1 12.7 0.3 0.56 10.4 0.1 2.3 2 1 1 3 3 3 0 Malonyl-CoA decarboxylase N-terminal domain Radical_SAM PF04055.21 gi|325969588|ref|YP_004245780.1| - 1.1e-15 58.4 0.0 2.3e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.19 gi|325969588|ref|YP_004245780.1| - 0.025 14.6 0.0 0.066 13.3 0.0 1.7 1 0 0 1 1 1 0 B12 binding domain DUF945 PF06097.11 gi|325969588|ref|YP_004245780.1| - 0.15 11.2 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF945) DUF4330 PF14221.6 gi|325969589|ref|YP_004245781.1| - 0.21 11.8 0.1 0.4 10.9 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) ABC_tran PF00005.27 gi|325969590|ref|YP_004245782.1| - 5e-57 192.2 0.0 1.9e-29 103.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|325969590|ref|YP_004245782.1| - 6.4e-19 68.9 7.9 2.9e-07 30.6 0.1 4.2 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|325969590|ref|YP_004245782.1| - 9.6e-12 44.8 5.1 0.00016 21.2 0.1 3.9 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|325969590|ref|YP_004245782.1| - 1.1e-10 41.1 0.1 0.00033 20.3 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|325969590|ref|YP_004245782.1| - 9.7e-09 35.3 0.1 0.0024 17.8 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|325969590|ref|YP_004245782.1| - 2.6e-08 34.6 0.0 0.0068 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|325969590|ref|YP_004245782.1| - 1.4e-07 31.5 0.0 0.048 13.4 0.0 3.2 2 1 0 3 3 3 2 AAA ATPase domain AAA_16 PF13191.6 gi|325969590|ref|YP_004245782.1| - 1.5e-07 31.9 0.0 0.022 15.1 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain T2SSE PF00437.20 gi|325969590|ref|YP_004245782.1| - 4.2e-06 26.0 0.2 0.0062 15.6 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_30 PF13604.6 gi|325969590|ref|YP_004245782.1| - 6.3e-06 26.0 0.5 0.18 11.5 0.1 3.4 3 1 0 3 3 3 2 AAA domain MMR_HSR1 PF01926.23 gi|325969590|ref|YP_004245782.1| - 1.2e-05 25.4 0.7 0.018 15.1 0.1 3.0 3 0 0 3 3 2 1 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|325969590|ref|YP_004245782.1| - 2.3e-05 24.1 0.0 0.12 11.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|325969590|ref|YP_004245782.1| - 3.6e-05 24.1 2.4 0.4 10.9 0.3 3.5 3 1 0 3 3 3 2 AAA domain AAA_5 PF07728.14 gi|325969590|ref|YP_004245782.1| - 0.00016 21.7 0.8 2 8.4 0.0 3.6 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|325969590|ref|YP_004245782.1| - 0.0002 21.2 1.6 18 5.0 0.0 4.2 4 0 0 4 4 4 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|325969590|ref|YP_004245782.1| - 0.00034 19.9 0.2 0.27 10.4 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain NACHT PF05729.12 gi|325969590|ref|YP_004245782.1| - 0.00063 19.7 0.3 1.4 8.8 0.1 2.7 2 0 0 2 2 2 2 NACHT domain AAA_7 PF12775.7 gi|325969590|ref|YP_004245782.1| - 0.00063 19.3 0.0 0.09 12.3 0.0 2.5 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_33 PF13671.6 gi|325969590|ref|YP_004245782.1| - 0.0012 19.1 0.2 0.79 9.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|325969590|ref|YP_004245782.1| - 0.0012 19.0 0.0 8.5 6.7 0.0 3.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DEAD PF00270.29 gi|325969590|ref|YP_004245782.1| - 0.0015 18.3 0.7 4.6 7.0 0.1 3.5 2 2 0 2 2 2 0 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|325969590|ref|YP_004245782.1| - 0.0019 18.5 0.1 1.8 9.0 0.1 2.7 2 0 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.21 gi|325969590|ref|YP_004245782.1| - 0.002 17.5 0.0 0.32 10.3 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.18 gi|325969590|ref|YP_004245782.1| - 0.0028 17.0 0.1 0.073 12.4 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA PF00004.29 gi|325969590|ref|YP_004245782.1| - 0.0034 17.8 3.1 3.2 8.2 0.1 4.4 2 2 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|325969590|ref|YP_004245782.1| - 0.0041 17.1 0.0 1.3 8.9 0.0 2.7 3 0 0 3 3 2 1 Rad17 P-loop domain PduV-EutP PF10662.9 gi|325969590|ref|YP_004245782.1| - 0.0069 16.1 0.1 2.7 7.8 0.0 3.3 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.17 gi|325969590|ref|YP_004245782.1| - 0.0092 15.8 0.2 2.1 8.1 0.0 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 gi|325969590|ref|YP_004245782.1| - 0.013 15.5 0.3 6.4 6.6 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Dynamin_N PF00350.23 gi|325969590|ref|YP_004245782.1| - 0.013 15.6 1.1 0.62 10.1 0.3 2.4 2 0 0 2 2 2 0 Dynamin family AAA_14 PF13173.6 gi|325969590|ref|YP_004245782.1| - 0.014 15.4 0.2 1.6 8.7 0.0 3.2 4 0 0 4 4 2 0 AAA domain AAA_24 PF13479.6 gi|325969590|ref|YP_004245782.1| - 0.018 14.7 0.1 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|325969590|ref|YP_004245782.1| - 0.02 15.0 1.9 1.2 9.2 0.1 2.7 3 0 0 3 3 2 0 Helicase HerA, central domain AAA_13 PF13166.6 gi|325969590|ref|YP_004245782.1| - 0.026 13.2 0.1 12 4.4 0.0 3.7 4 0 0 4 4 4 0 AAA domain G-alpha PF00503.20 gi|325969590|ref|YP_004245782.1| - 0.028 13.6 0.0 1.2 8.2 0.0 2.2 2 0 0 2 2 2 0 G-protein alpha subunit Zeta_toxin PF06414.12 gi|325969590|ref|YP_004245782.1| - 0.028 13.7 0.0 0.63 9.3 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin Ploopntkinase3 PF18751.1 gi|325969590|ref|YP_004245782.1| - 0.033 14.1 0.1 11 5.9 0.0 2.3 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 AAA_27 PF13514.6 gi|325969590|ref|YP_004245782.1| - 0.033 13.8 0.0 6.9 6.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|325969590|ref|YP_004245782.1| - 0.036 13.5 0.0 5.2 6.5 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein cobW PF02492.19 gi|325969590|ref|YP_004245782.1| - 0.057 13.0 0.9 3.8 7.1 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MCM PF00493.23 gi|325969590|ref|YP_004245782.1| - 0.07 12.2 0.1 0.43 9.6 0.0 2.2 3 0 0 3 3 3 0 MCM P-loop domain AAA_28 PF13521.6 gi|325969590|ref|YP_004245782.1| - 0.09 13.0 0.2 2.9 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|325969590|ref|YP_004245782.1| - 0.093 11.5 3.8 4.8 5.9 0.1 2.8 3 0 0 3 3 3 0 Predicted ATPase of the ABC class DLIC PF05783.11 gi|325969590|ref|YP_004245782.1| - 0.1 11.4 0.1 8.9 5.0 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|325969590|ref|YP_004245782.1| - 0.11 13.1 2.5 12 6.4 0.0 3.0 3 1 0 3 3 2 0 AAA domain TniB PF05621.11 gi|325969590|ref|YP_004245782.1| - 0.12 11.8 3.7 1.5 8.2 0.0 3.3 4 0 0 4 4 4 0 Bacterial TniB protein SRP54 PF00448.22 gi|325969590|ref|YP_004245782.1| - 0.14 11.8 0.4 8.9 5.9 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF815 PF05673.13 gi|325969590|ref|YP_004245782.1| - 0.17 11.0 0.2 1 8.5 0.0 2.2 3 0 0 3 3 2 0 Protein of unknown function (DUF815) Roc PF08477.13 gi|325969590|ref|YP_004245782.1| - 0.26 11.5 0.6 16 5.7 0.0 2.8 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase ATPase PF06745.13 gi|325969590|ref|YP_004245782.1| - 0.26 10.6 2.9 16 4.7 0.0 3.3 4 0 0 4 4 4 0 KaiC CbiQ PF02361.16 gi|325969591|ref|YP_004245783.1| - 3.9e-14 52.8 18.3 3.9e-14 52.8 18.3 2.9 2 1 0 2 2 2 1 Cobalt transport protein MrpF_PhaF PF04066.13 gi|325969591|ref|YP_004245783.1| - 0.062 13.7 0.9 0.062 13.7 0.9 5.4 5 2 1 6 6 6 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) eIF-6 PF01912.18 gi|325969592|ref|YP_004245784.1| - 5.2e-60 202.2 2.6 6.1e-60 202.0 2.6 1.0 1 0 0 1 1 1 1 eIF-6 family Nit_Regul_Hom PF10126.9 gi|325969592|ref|YP_004245784.1| - 0.13 12.2 0.7 1.1 9.4 0.1 2.5 1 1 2 3 3 3 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII DUF402 PF04167.13 gi|325969593|ref|YP_004245785.1| - 8.6e-13 48.3 0.7 1.5e-12 47.5 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|325969593|ref|YP_004245785.1| - 0.015 14.7 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease E/G family Acyl_transf_3 PF01757.22 gi|325969594|ref|YP_004245786.1| - 0.028 13.5 13.4 0.035 13.2 13.4 1.0 1 0 0 1 1 1 0 Acyltransferase family Phage_holin_3_6 PF07332.11 gi|325969594|ref|YP_004245786.1| - 2.1 8.4 12.7 2.5 8.2 1.4 2.2 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III gpUL132 PF11359.8 gi|325969594|ref|YP_004245786.1| - 3.2 7.2 6.8 0.59 9.6 1.5 1.9 1 1 1 2 2 2 0 Glycoprotein UL132 SLATT_3 PF18184.1 gi|325969594|ref|YP_004245786.1| - 4.7 7.3 4.4 6.2 6.9 1.6 2.0 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 3 PaREP1 PF05942.11 gi|325969595|ref|YP_004245787.1| - 1.3e-31 108.9 2.1 1.3e-31 108.9 2.1 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|325969595|ref|YP_004245787.1| - 0.011 15.9 0.5 0.019 15.1 0.5 1.5 1 0 0 1 1 1 0 HEPN domain Hydant_A_N PF05378.13 gi|325969595|ref|YP_004245787.1| - 0.049 13.3 0.1 0.076 12.7 0.1 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region AAA_31 PF13614.6 gi|325969596|ref|YP_004245788.1| - 4.8e-10 39.6 0.0 6.6e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|325969596|ref|YP_004245788.1| - 2.2e-07 31.0 0.0 2.7e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|325969596|ref|YP_004245788.1| - 0.00015 21.3 0.1 0.00026 20.5 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|325969596|ref|YP_004245788.1| - 0.015 14.6 0.1 0.024 13.9 0.1 1.5 1 1 0 1 1 1 0 ATPase MipZ CBP_BcsQ PF06564.12 gi|325969596|ref|YP_004245788.1| - 0.022 14.3 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Metallophos_2 PF12850.7 gi|325969597|ref|YP_004245789.1| - 8.3e-08 32.6 0.0 1.4e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|325969597|ref|YP_004245789.1| - 8.6e-08 32.9 0.1 1.1e-05 26.0 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase CbiK PF06180.11 gi|325969597|ref|YP_004245789.1| - 0.062 12.6 0.1 0.095 12.0 0.1 1.2 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) Rol_Rep_N PF18106.1 gi|325969597|ref|YP_004245789.1| - 0.16 12.3 0.0 0.35 11.2 0.0 1.5 1 0 0 1 1 1 0 Rolling Circle replication initiation protein N-terminal domain TIM PF00121.18 gi|325969599|ref|YP_004245791.1| - 9.1e-11 41.6 0.0 2.2e-09 37.1 0.0 2.0 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|325969599|ref|YP_004245791.1| - 7e-08 32.1 0.1 9.2e-08 31.7 0.1 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|325969599|ref|YP_004245791.1| - 4.7e-06 26.0 0.0 1.3e-05 24.5 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|325969599|ref|YP_004245791.1| - 3.8e-05 23.3 0.2 7.9e-05 22.2 0.1 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein Trp_syntA PF00290.20 gi|325969599|ref|YP_004245791.1| - 0.00014 20.8 0.1 0.00023 20.1 0.1 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain NMO PF03060.15 gi|325969599|ref|YP_004245791.1| - 0.00058 19.3 0.2 0.0011 18.5 0.2 1.5 1 0 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.14 gi|325969599|ref|YP_004245791.1| - 0.012 14.8 0.1 0.018 14.2 0.1 1.3 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|325969599|ref|YP_004245791.1| - 0.015 14.3 0.1 0.037 13.1 0.1 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|325969599|ref|YP_004245791.1| - 0.036 13.1 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|325969599|ref|YP_004245791.1| - 0.15 11.5 0.1 0.43 10.0 0.1 1.7 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Aconitase PF00330.20 gi|325969600|ref|YP_004245792.1| - 2.3e-166 554.4 0.0 2.9e-166 554.0 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|325969600|ref|YP_004245792.1| - 2.6e-37 128.1 0.0 4.3e-37 127.4 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Ykof PF07615.11 gi|325969602|ref|YP_004245794.1| - 0.061 13.8 0.1 0.13 12.7 0.1 1.5 1 0 0 1 1 1 0 YKOF-related Family NAD_kinase PF01513.21 gi|325969604|ref|YP_004245796.1| - 1.8e-32 112.7 1.4 4.3e-32 111.5 0.6 1.7 2 0 0 2 2 2 1 ATP-NAD kinase HTH_9 PF08221.11 gi|325969604|ref|YP_004245796.1| - 2.9e-05 24.1 0.1 6.1e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.6 gi|325969604|ref|YP_004245796.1| - 4.3e-05 23.0 1.1 0.00012 21.5 1.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|325969604|ref|YP_004245796.1| - 0.00016 21.5 0.8 0.00026 20.9 0.1 1.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|325969604|ref|YP_004245796.1| - 0.00039 20.2 0.2 0.0009 19.1 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|325969604|ref|YP_004245796.1| - 0.001 18.7 0.2 0.003 17.2 0.2 1.8 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|325969604|ref|YP_004245796.1| - 0.0038 17.1 0.6 0.01 15.7 0.6 1.7 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|325969604|ref|YP_004245796.1| - 0.018 14.9 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|325969604|ref|YP_004245796.1| - 0.02 14.7 0.1 0.038 13.8 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain RepL PF05732.11 gi|325969604|ref|YP_004245796.1| - 0.049 13.1 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_DeoR PF08220.12 gi|325969604|ref|YP_004245796.1| - 0.052 13.3 0.3 0.1 12.4 0.3 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|325969604|ref|YP_004245796.1| - 0.075 13.5 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF5608 PF18356.1 gi|325969605|ref|YP_004245797.1| - 0.16 12.0 1.0 0.45 10.6 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5608) Delta_lysin PF05372.11 gi|325969605|ref|YP_004245797.1| - 1.6 8.1 5.1 6.3 6.2 0.0 3.6 4 0 0 4 4 4 0 Delta lysin family RNA_pol_L_2 PF13656.6 gi|325969606|ref|YP_004245798.1| - 7e-19 67.4 0.0 8.1e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain CBS PF00571.28 gi|325969608|ref|YP_004245800.1| - 6.8e-45 151.3 12.3 2.7e-11 43.8 0.1 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|325969608|ref|YP_004245800.1| - 0.0025 18.6 4.2 0.23 12.3 1.8 2.4 2 0 0 2 2 2 2 Sigma 54 modulation protein / S30EA ribosomal protein DUF5059 PF16502.5 gi|325969608|ref|YP_004245800.1| - 0.23 10.1 0.0 0.31 9.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5059) DUF2122 PF09895.9 gi|325969609|ref|YP_004245801.1| - 6.7e-29 100.4 0.0 8.9e-29 100.0 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Oxidored_q4 PF00507.19 gi|325969610|ref|YP_004245802.1| - 2.3e-09 37.3 0.7 2.3e-09 37.3 0.7 1.9 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Pox_P21 PF05313.12 gi|325969610|ref|YP_004245802.1| - 0.76 9.3 11.7 1.6 8.3 5.5 2.1 2 0 0 2 2 2 0 Poxvirus P21 membrane protein Phage_holin_3_6 PF07332.11 gi|325969610|ref|YP_004245802.1| - 1.6 8.8 10.3 1.3 9.1 2.4 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III VirB3 PF05101.13 gi|325969610|ref|YP_004245802.1| - 5.1 7.4 11.0 5.1 7.4 0.4 2.3 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein Complex1_30kDa PF00329.19 gi|325969611|ref|YP_004245803.1| - 5.1e-26 91.7 0.1 8.4e-26 91.0 0.1 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|325969611|ref|YP_004245803.1| - 3.8e-20 72.0 0.1 6.7e-20 71.3 0.1 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|325969612|ref|YP_004245804.1| - 5.2e-89 297.9 0.0 7e-89 297.5 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NurA PF09376.10 gi|325969613|ref|YP_004245805.1| - 4.3e-17 62.6 0.0 7.1e-17 61.9 0.0 1.3 1 1 0 1 1 1 1 NurA domain Colicin PF01024.19 gi|325969614|ref|YP_004245806.1| - 1.7 8.5 4.8 2.3 8.1 4.8 1.1 1 0 0 1 1 1 0 Colicin pore forming domain Zeta_toxin PF06414.12 gi|325969615|ref|YP_004245807.1| - 0.0044 16.3 0.0 0.0082 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin MipZ PF09140.11 gi|325969615|ref|YP_004245807.1| - 0.0058 16.0 0.1 0.015 14.6 0.1 1.6 1 0 0 1 1 1 1 ATPase MipZ MeaB PF03308.16 gi|325969615|ref|YP_004245807.1| - 0.018 14.0 0.2 0.035 13.1 0.2 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ParA PF10609.9 gi|325969615|ref|YP_004245807.1| - 0.024 14.1 0.1 0.064 12.7 0.1 1.7 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase MobB PF03205.14 gi|325969615|ref|YP_004245807.1| - 0.026 14.4 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|325969615|ref|YP_004245807.1| - 0.09 12.8 0.3 0.09 12.8 0.3 2.1 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain Pyridox_ox_2 PF12900.7 gi|325969616|ref|YP_004245808.1| - 1.6e-33 115.7 0.0 1.9e-33 115.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase B3_4 PF03483.17 gi|325969617|ref|YP_004245809.1| - 6.8e-25 87.7 0.0 9.4e-25 87.3 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain ECR1_N PF14382.6 gi|325969618|ref|YP_004245810.1| - 4.2e-07 29.6 0.1 7.3e-07 28.9 0.1 1.4 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region zf-ribbon_3 PF13248.6 gi|325969618|ref|YP_004245810.1| - 2.9e-05 23.3 0.9 0.14 11.6 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|325969618|ref|YP_004245810.1| - 0.00012 21.9 0.5 0.00022 21.1 0.5 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DNA_RNApol_7kD PF03604.13 gi|325969618|ref|YP_004245810.1| - 0.00019 21.0 1.5 0.00048 19.7 1.5 1.6 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|325969618|ref|YP_004245810.1| - 0.00025 20.6 2.7 0.00058 19.5 2.7 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zf-RING_7 PF02591.15 gi|325969618|ref|YP_004245810.1| - 0.00076 19.6 0.3 0.1 12.8 0.0 2.5 2 0 0 2 2 2 1 C4-type zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|325969618|ref|YP_004245810.1| - 0.0009 19.2 0.2 0.0015 18.4 0.2 1.4 1 0 0 1 1 1 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|325969618|ref|YP_004245810.1| - 0.0012 18.8 1.2 0.0023 17.8 1.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|325969618|ref|YP_004245810.1| - 0.0017 18.4 2.1 0.0037 17.4 2.1 1.5 1 1 0 1 1 1 1 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|325969618|ref|YP_004245810.1| - 0.0029 17.3 0.4 0.0049 16.6 0.4 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain HypA PF01155.19 gi|325969618|ref|YP_004245810.1| - 0.0042 17.1 0.1 0.0072 16.3 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|325969618|ref|YP_004245810.1| - 0.0045 17.0 0.3 0.0078 16.2 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|325969618|ref|YP_004245810.1| - 0.014 15.2 3.4 1.2 9.1 0.4 2.5 3 0 0 3 3 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|325969618|ref|YP_004245810.1| - 0.018 14.7 3.7 0.15 11.7 3.7 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain EXOSC1 PF10447.9 gi|325969618|ref|YP_004245810.1| - 0.018 15.6 4.7 1.1 10.0 0.3 3.1 2 1 1 3 3 3 0 Exosome component EXOSC1/CSL4 zf-ACC PF17848.1 gi|325969618|ref|YP_004245810.1| - 0.024 14.7 1.0 2 8.6 0.1 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DNA_ligase_ZBD PF03119.16 gi|325969618|ref|YP_004245810.1| - 0.027 14.5 2.4 4.4 7.4 0.4 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain HalOD2 PF18547.1 gi|325969618|ref|YP_004245810.1| - 0.043 13.7 0.6 9.8 6.2 0.1 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-ISL3 PF14690.6 gi|325969618|ref|YP_004245810.1| - 0.049 14.3 2.3 8.2 7.2 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.6 gi|325969618|ref|YP_004245810.1| - 0.049 13.5 2.3 5.6 7.0 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|325969618|ref|YP_004245810.1| - 0.051 13.5 4.3 3.2 7.8 0.5 2.6 1 1 1 2 2 2 0 zinc-ribbon domain FAM35_C PF15793.5 gi|325969618|ref|YP_004245810.1| - 0.065 12.6 0.4 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 Protein family FAM35, C-terminal Ribosomal_L27 PF01016.19 gi|325969618|ref|YP_004245810.1| - 0.069 13.2 0.0 0.15 12.1 0.0 1.6 1 0 0 1 1 1 0 Ribosomal L27 protein Zn_Tnp_IS91 PF14319.6 gi|325969618|ref|YP_004245810.1| - 0.073 13.1 0.3 0.16 12.1 0.3 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain Zn_ribbon_SprT PF17283.2 gi|325969618|ref|YP_004245810.1| - 0.083 12.8 1.9 1.6 8.7 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-IS66 PF13005.7 gi|325969618|ref|YP_004245810.1| - 0.087 13.2 1.5 12 6.4 0.2 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.12 gi|325969618|ref|YP_004245810.1| - 0.089 12.8 0.2 0.14 12.2 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons CpXC PF14353.6 gi|325969618|ref|YP_004245810.1| - 0.094 12.8 1.0 7 6.7 0.1 2.3 1 1 1 2 2 2 0 CpXC protein HscB_4_cys PF18256.1 gi|325969618|ref|YP_004245810.1| - 0.11 12.3 1.5 0.18 11.7 1.5 1.3 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Zn_Tnp_IS1595 PF12760.7 gi|325969618|ref|YP_004245810.1| - 0.12 12.3 2.7 0.32 11.0 2.6 1.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1451 PF07295.11 gi|325969618|ref|YP_004245810.1| - 0.13 12.3 0.4 0.19 11.7 0.4 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-Mss51 PF13824.6 gi|325969618|ref|YP_004245810.1| - 0.15 12.2 0.6 0.27 11.3 0.6 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-LITAF-like PF10601.9 gi|325969618|ref|YP_004245810.1| - 0.19 12.0 0.4 20 5.5 0.1 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF3797 PF12677.7 gi|325969618|ref|YP_004245810.1| - 0.21 11.5 8.1 2.4 8.1 0.2 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) zf-FPG_IleRS PF06827.14 gi|325969618|ref|YP_004245810.1| - 0.24 11.3 3.2 3.2 7.7 0.3 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ribosomal_L32p PF01783.23 gi|325969618|ref|YP_004245810.1| - 0.25 11.6 1.3 1 9.7 0.5 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.12 gi|325969618|ref|YP_004245810.1| - 0.27 10.8 4.0 1.7 8.2 4.0 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|325969618|ref|YP_004245810.1| - 0.4 10.7 2.4 12 6.0 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf_UBZ PF18439.1 gi|325969618|ref|YP_004245810.1| - 0.43 10.2 0.9 12 5.6 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C4_Topoisom PF01396.19 gi|325969618|ref|YP_004245810.1| - 0.43 10.4 3.3 9.2 6.1 0.4 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-TFIIB PF13453.6 gi|325969618|ref|YP_004245810.1| - 1.5 8.2 4.8 16 5.0 4.9 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger DUF1610 PF07754.11 gi|325969618|ref|YP_004245810.1| - 1.7 8.7 5.7 8.4 6.5 1.9 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|325969618|ref|YP_004245810.1| - 2.2 8.1 4.4 20 5.0 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|325969618|ref|YP_004245810.1| - 2.7 8.2 5.5 26 5.0 5.5 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 SurE PF01975.17 gi|325969619|ref|YP_004245811.1| - 1e-46 159.2 0.0 1.2e-46 159.0 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE tRNA-synt_1 PF00133.22 gi|325969620|ref|YP_004245812.1| - 7.9e-164 546.2 0.4 7.9e-164 546.2 0.4 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|325969620|ref|YP_004245812.1| - 2.2e-23 82.7 4.5 2.7e-07 29.7 1.7 4.8 4 1 0 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|325969620|ref|YP_004245812.1| - 1.4e-22 80.3 0.5 1.4e-22 80.3 0.5 2.1 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|325969620|ref|YP_004245812.1| - 6.8e-07 29.0 0.1 3.2e-06 26.8 0.1 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|325969620|ref|YP_004245812.1| - 0.00031 20.2 0.0 0.071 12.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|325969620|ref|YP_004245812.1| - 0.0046 15.9 0.2 0.02 13.8 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) DUF1233 PF06806.12 gi|325969620|ref|YP_004245812.1| - 0.032 13.8 0.0 0.23 11.1 0.0 2.5 2 0 0 2 2 2 0 Putative excisionase (DUF1233) HscB_4_cys PF18256.1 gi|325969620|ref|YP_004245812.1| - 1.9 8.4 6.6 0.87 9.5 0.9 2.4 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif ASCH PF04266.14 gi|325969621|ref|YP_004245813.1| - 4.1e-07 30.5 0.0 6.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 ASCH domain HemN_C PF06969.16 gi|325969621|ref|YP_004245813.1| - 0.075 13.1 0.0 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 HemN C-terminal domain DUF1772 PF08592.11 gi|325969622|ref|YP_004245814.1| - 0.0049 17.2 1.0 0.0082 16.5 1.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF1772) Wzy_C PF04932.15 gi|325969622|ref|YP_004245814.1| - 0.0056 16.3 1.0 0.007 16.0 1.0 1.1 1 0 0 1 1 1 1 O-Antigen ligase Baculo_11_kDa PF06143.11 gi|325969622|ref|YP_004245814.1| - 0.048 13.2 0.2 0.093 12.3 0.2 1.4 1 0 0 1 1 1 0 Baculovirus 11 kDa family DUF3487 PF11990.8 gi|325969622|ref|YP_004245814.1| - 0.54 10.1 3.2 0.45 10.4 0.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) ATP-cone PF03477.16 gi|325969623|ref|YP_004245815.1| - 2.6e-07 31.1 1.2 3e-07 30.9 1.2 1.1 1 0 0 1 1 1 1 ATP cone domain SKI PF01202.22 gi|325969623|ref|YP_004245815.1| - 0.08 13.1 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Shikimate kinase CLP1_P PF16575.5 gi|325969624|ref|YP_004245816.1| - 5.7e-34 117.6 0.1 8.2e-34 117.0 0.1 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|325969624|ref|YP_004245816.1| - 5e-06 26.6 0.2 1.3e-05 25.3 0.2 1.7 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|325969624|ref|YP_004245816.1| - 0.02 14.6 0.4 0.069 12.9 0.4 1.8 1 1 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|325969624|ref|YP_004245816.1| - 0.041 14.6 0.3 0.19 12.5 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4162) MobB PF03205.14 gi|325969624|ref|YP_004245816.1| - 0.042 13.8 0.0 0.099 12.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.6 gi|325969624|ref|YP_004245816.1| - 0.073 13.6 1.4 0.31 11.6 1.4 2.2 1 1 0 1 1 1 0 AAA domain WbqC PF08889.11 gi|325969625|ref|YP_004245817.1| - 0.089 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 WbqC-like protein family AAA_5 PF07728.14 gi|325969626|ref|YP_004245818.1| - 1.3e-20 73.8 0.0 2.4e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|325969626|ref|YP_004245818.1| - 2.8e-20 72.5 0.0 4.7e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|325969626|ref|YP_004245818.1| - 2.5e-12 46.8 0.0 1.2e-11 44.7 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|325969626|ref|YP_004245818.1| - 3e-09 36.6 0.2 2.6e-07 30.2 0.2 2.4 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|325969626|ref|YP_004245818.1| - 7e-09 36.2 0.0 2.1e-08 34.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|325969626|ref|YP_004245818.1| - 2.6e-08 34.3 0.0 6.4e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.11 gi|325969626|ref|YP_004245818.1| - 3.5e-08 32.8 0.0 0.00057 18.9 0.0 2.3 1 1 1 2 2 2 2 PrkA AAA domain MCM PF00493.23 gi|325969626|ref|YP_004245818.1| - 1.9e-07 30.4 0.0 3.3e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 gi|325969626|ref|YP_004245818.1| - 1.2e-05 25.7 0.0 8.9e-05 22.9 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|325969626|ref|YP_004245818.1| - 0.00011 22.0 0.8 0.034 13.9 0.1 2.4 1 1 1 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|325969626|ref|YP_004245818.1| - 0.00064 19.8 0.0 0.0016 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|325969626|ref|YP_004245818.1| - 0.00079 19.2 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|325969626|ref|YP_004245818.1| - 0.001 19.2 0.0 0.0028 17.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|325969626|ref|YP_004245818.1| - 0.0026 17.7 0.0 0.0075 16.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain IstB_IS21 PF01695.17 gi|325969626|ref|YP_004245818.1| - 0.0026 17.5 0.0 0.14 11.8 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein Sigma54_activ_2 PF14532.6 gi|325969626|ref|YP_004245818.1| - 0.0031 17.6 0.0 0.014 15.5 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain ATP-synt_ab PF00006.25 gi|325969626|ref|YP_004245818.1| - 0.0038 16.9 0.0 0.045 13.4 0.0 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain DEAD PF00270.29 gi|325969626|ref|YP_004245818.1| - 0.0068 16.2 0.0 2.5 7.8 0.0 2.4 1 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|325969626|ref|YP_004245818.1| - 0.0081 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_32 PF13654.6 gi|325969626|ref|YP_004245818.1| - 0.0091 14.8 0.1 0.27 10.0 0.0 2.5 2 1 1 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|325969626|ref|YP_004245818.1| - 0.01 15.7 0.1 2.5 8.0 0.0 3.0 3 0 0 3 3 3 0 NTPase RsgA_GTPase PF03193.16 gi|325969626|ref|YP_004245818.1| - 0.017 15.1 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|325969626|ref|YP_004245818.1| - 0.039 13.7 0.0 0.082 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|325969626|ref|YP_004245818.1| - 0.044 13.8 0.0 0.092 12.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|325969626|ref|YP_004245818.1| - 0.052 14.1 0.0 0.17 12.4 0.0 1.9 2 0 0 2 2 1 0 ABC transporter FliL PF03748.14 gi|325969626|ref|YP_004245818.1| - 0.084 13.5 0.0 0.26 11.9 0.0 1.8 1 0 0 1 1 1 0 Flagellar basal body-associated protein FliL PduV-EutP PF10662.9 gi|325969626|ref|YP_004245818.1| - 0.16 11.7 0.0 0.35 10.6 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation VWA PF00092.28 gi|325969627|ref|YP_004245819.1| - 1.9e-19 70.6 0.0 8.4e-19 68.5 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|325969627|ref|YP_004245819.1| - 2.7e-15 56.9 0.0 2.1e-14 54.1 0.0 2.4 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|325969627|ref|YP_004245819.1| - 2.2e-11 44.0 0.0 8.6e-11 42.0 0.0 2.0 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|325969627|ref|YP_004245819.1| - 1.2e-09 37.9 1.5 1.6e-08 34.2 1.3 2.5 2 1 0 2 2 2 1 VWA domain containing CoxE-like protein DUF58 PF01882.18 gi|325969627|ref|YP_004245819.1| - 1.1e-05 25.6 0.0 4e-05 23.8 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function DUF58 Radical_SAM PF04055.21 gi|325969627|ref|YP_004245819.1| - 0.03 14.7 0.1 4.4 7.7 0.0 2.5 2 0 0 2 2 2 0 Radical SAM superfamily DNA_primase_lrg PF04104.14 gi|325969628|ref|YP_004245820.1| - 1.2e-27 97.0 0.0 2e-27 96.3 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit FPL PF09758.9 gi|325969628|ref|YP_004245820.1| - 0.026 14.5 0.0 0.1 12.6 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised conserved protein Nucleopor_Nup85 PF07575.13 gi|325969628|ref|YP_004245820.1| - 0.13 10.8 0.0 0.21 10.1 0.0 1.3 1 0 0 1 1 1 0 Nup85 Nucleoporin DUF2204 PF09970.9 gi|325969630|ref|YP_004245822.1| - 3.5e-50 170.2 6.5 4e-50 170.0 6.5 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) RNA_binding PF01877.17 gi|325969630|ref|YP_004245822.1| - 0.054 13.8 0.1 0.082 13.2 0.1 1.3 1 0 0 1 1 1 0 RNA binding Ribosomal_L6 PF00347.23 gi|325969631|ref|YP_004245823.1| - 5.2e-19 68.7 6.5 6.4e-10 39.6 2.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF2170 PF09938.9 gi|325969631|ref|YP_004245823.1| - 0.078 12.7 0.0 0.88 9.3 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2170) DUF4245 PF14030.6 gi|325969632|ref|YP_004245824.1| - 0.096 12.7 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4245) SKG6 PF08693.10 gi|325969632|ref|YP_004245824.1| - 3.1 7.3 7.2 0.16 11.4 1.1 2.1 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF2341 PF10102.9 gi|325969634|ref|YP_004245826.1| - 0.0097 16.5 0.2 0.039 14.6 0.2 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) Polbeta PF18765.1 gi|325969638|ref|YP_004245830.1| - 6.6e-08 32.5 0.0 1.1e-07 31.8 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|325969639|ref|YP_004245831.1| - 5.5e-08 32.7 0.1 7.3e-08 32.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF87 PF01935.17 gi|325969640|ref|YP_004245832.1| - 4.7e-20 72.6 0.2 7.8e-20 71.9 0.2 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|325969640|ref|YP_004245832.1| - 7.5e-08 31.7 0.0 3.8e-07 29.4 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|325969640|ref|YP_004245832.1| - 5.7e-05 22.6 0.1 0.0032 16.9 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|325969640|ref|YP_004245832.1| - 0.00018 21.8 0.0 0.012 15.9 0.0 2.4 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|325969640|ref|YP_004245832.1| - 0.00043 19.4 0.1 0.00098 18.2 0.1 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|325969640|ref|YP_004245832.1| - 0.0025 18.3 0.0 0.0048 17.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_10 PF12846.7 gi|325969640|ref|YP_004245832.1| - 0.0041 16.1 0.4 1.2 8.0 0.2 2.4 2 1 0 2 2 2 2 AAA-like domain MMR_HSR1 PF01926.23 gi|325969640|ref|YP_004245832.1| - 0.0057 16.7 0.0 0.018 15.1 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|325969640|ref|YP_004245832.1| - 0.0064 16.4 0.8 0.035 14.0 0.1 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|325969640|ref|YP_004245832.1| - 0.012 14.8 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_16 PF13191.6 gi|325969640|ref|YP_004245832.1| - 0.021 15.2 0.1 0.079 13.3 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain DUF853 PF05872.12 gi|325969640|ref|YP_004245832.1| - 0.022 13.3 0.0 0.052 12.1 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) AAA_14 PF13173.6 gi|325969640|ref|YP_004245832.1| - 0.028 14.5 0.1 1.6 8.7 0.0 2.7 3 0 0 3 3 3 0 AAA domain IstB_IS21 PF01695.17 gi|325969640|ref|YP_004245832.1| - 0.084 12.6 0.1 0.17 11.6 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|325969640|ref|YP_004245832.1| - 0.091 13.2 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase RusA PF05866.11 gi|325969640|ref|YP_004245832.1| - 0.1 13.1 0.1 0.18 12.3 0.1 1.3 1 0 0 1 1 1 0 Endodeoxyribonuclease RusA RsgA_GTPase PF03193.16 gi|325969640|ref|YP_004245832.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|325969640|ref|YP_004245832.1| - 0.15 12.6 0.2 0.56 10.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|325969640|ref|YP_004245832.1| - 0.21 11.9 2.6 0.96 9.8 0.5 2.7 2 1 0 2 2 2 0 AAA domain AA_permease_2 PF13520.6 gi|325969641|ref|YP_004245833.1| - 1.2e-43 149.6 56.2 1.2e-43 149.6 56.2 2.3 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|325969641|ref|YP_004245833.1| - 2.4e-29 102.3 52.6 2.4e-29 102.3 52.6 2.5 1 1 2 3 3 3 1 Amino acid permease DUF1980 PF09323.10 gi|325969641|ref|YP_004245833.1| - 1.7 8.5 10.2 1 9.3 1.7 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) OMPdecase PF00215.24 gi|325969642|ref|YP_004245834.1| - 1.9e-16 60.4 0.0 2.5e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family AsnC_trans_reg PF01037.21 gi|325969643|ref|YP_004245835.1| - 6e-16 58.2 0.0 9.4e-16 57.5 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|325969643|ref|YP_004245835.1| - 7.2e-10 38.3 2.7 1.2e-09 37.6 2.7 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|325969643|ref|YP_004245835.1| - 4.2e-09 36.1 2.0 7.4e-09 35.3 2.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|325969643|ref|YP_004245835.1| - 0.00086 19.2 0.2 0.0018 18.2 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|325969643|ref|YP_004245835.1| - 0.0027 17.6 0.7 0.0049 16.8 0.7 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|325969643|ref|YP_004245835.1| - 0.016 14.8 0.3 0.026 14.1 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family E3_UFM1_ligase PF09743.9 gi|325969643|ref|YP_004245835.1| - 0.04 13.5 0.1 0.052 13.2 0.1 1.2 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 TrmB PF01978.19 gi|325969643|ref|YP_004245835.1| - 0.052 13.4 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RuvB_C PF05491.13 gi|325969643|ref|YP_004245835.1| - 0.063 13.1 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HxlR PF01638.17 gi|325969643|ref|YP_004245835.1| - 0.065 13.1 0.1 0.16 11.9 0.1 1.7 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_DeoR PF08220.12 gi|325969643|ref|YP_004245835.1| - 0.12 12.2 0.2 0.23 11.2 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|325969643|ref|YP_004245835.1| - 0.13 12.6 0.1 0.21 12.0 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor Fer4 PF00037.27 gi|325969644|ref|YP_004245836.1| - 7.1e-11 41.5 19.5 8.2e-10 38.1 4.7 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|325969644|ref|YP_004245836.1| - 4.6e-10 39.1 4.0 4.6e-10 39.1 4.0 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325969644|ref|YP_004245836.1| - 1.9e-09 38.0 7.8 5.9e-09 36.4 7.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|325969644|ref|YP_004245836.1| - 2.9e-09 36.9 9.1 3.8e-09 36.5 9.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325969644|ref|YP_004245836.1| - 1.7e-08 34.4 6.1 1.7e-08 34.4 6.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325969644|ref|YP_004245836.1| - 1.8e-08 35.2 7.3 3e-05 24.9 0.6 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|325969644|ref|YP_004245836.1| - 4.4e-08 32.8 11.0 7.4e-08 32.0 3.0 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325969644|ref|YP_004245836.1| - 2.1e-06 27.8 7.9 4.2e-06 26.8 7.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|325969644|ref|YP_004245836.1| - 3.8e-06 27.5 11.1 0.00015 22.4 11.1 2.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|325969644|ref|YP_004245836.1| - 2.3e-05 25.0 17.8 0.00084 20.1 6.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|325969644|ref|YP_004245836.1| - 6.5e-05 23.1 13.3 9.3e-05 22.7 3.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|325969644|ref|YP_004245836.1| - 0.00033 21.1 7.5 0.0082 16.7 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|325969644|ref|YP_004245836.1| - 0.0024 18.7 4.1 0.011 16.5 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|325969644|ref|YP_004245836.1| - 0.0024 17.9 3.7 0.004 17.2 3.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|325969644|ref|YP_004245836.1| - 0.0025 18.2 10.6 0.28 11.6 9.7 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|325969644|ref|YP_004245836.1| - 0.017 15.7 12.8 0.55 10.8 12.8 2.4 1 1 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|325969644|ref|YP_004245836.1| - 3.6 7.8 12.9 0.49 10.6 3.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain TatD_DNase PF01026.21 gi|325969645|ref|YP_004245837.1| - 2.9e-50 171.0 0.0 3.3e-50 170.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Ribosomal_S17 PF00366.20 gi|325969646|ref|YP_004245838.1| - 1.1e-19 70.3 2.0 1.6e-19 69.7 2.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S17 Peptidase_M11 PF05548.11 gi|325969646|ref|YP_004245838.1| - 0.0069 15.6 0.1 0.0089 15.2 0.1 1.1 1 0 0 1 1 1 1 Gametolysin peptidase M11 zf-C3H1 PF10650.9 gi|325969646|ref|YP_004245838.1| - 0.053 13.2 1.0 0.096 12.4 1.0 1.4 1 0 0 1 1 1 0 Putative zinc-finger domain CxC5 PF18718.1 gi|325969646|ref|YP_004245838.1| - 0.21 11.7 0.8 0.37 10.9 0.8 1.4 1 1 0 1 1 1 0 CxC5 like cysteine cluster associated with KDZ transposases PALP PF00291.25 gi|325969647|ref|YP_004245839.1| - 6.8e-50 170.1 0.0 1.3e-49 169.2 0.0 1.4 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ceramidse_alk_C PF17048.5 gi|325969648|ref|YP_004245840.1| - 0.0062 16.4 0.3 0.0071 16.2 0.3 1.1 1 0 0 1 1 1 1 Neutral/alkaline non-lysosomal ceramidase, C-terminal Aminotran_3 PF00202.21 gi|325969649|ref|YP_004245841.1| - 2.8e-119 398.4 0.0 3.4e-119 398.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Pico_P2B PF01552.17 gi|325969650|ref|YP_004245842.1| - 0.0067 16.6 3.3 0.0082 16.3 0.8 2.2 2 1 0 2 2 2 1 Picornavirus 2B protein Cyt_bd_oxida_I PF01654.17 gi|325969652|ref|YP_004245844.1| - 3.5e-16 58.8 17.4 3.5e-16 58.8 17.4 2.4 1 1 1 2 2 2 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_I PF01654.17 gi|325969653|ref|YP_004245845.1| - 5.2e-60 203.2 39.7 5.7e-59 199.8 39.7 2.0 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Pyr_redox_2 PF07992.14 gi|325969654|ref|YP_004245846.1| - 2.6e-50 171.3 0.1 3.7e-50 170.8 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|325969654|ref|YP_004245846.1| - 8.1e-20 71.2 6.6 7.8e-16 58.4 0.3 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|325969654|ref|YP_004245846.1| - 1.7e-16 60.3 0.1 2.2e-11 43.6 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|325969654|ref|YP_004245846.1| - 2e-15 57.0 0.0 4.8e-15 55.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.14 gi|325969654|ref|YP_004245846.1| - 9.3e-10 37.8 5.3 0.00039 19.2 0.7 3.9 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|325969654|ref|YP_004245846.1| - 5.3e-07 29.5 7.9 0.022 14.3 0.1 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|325969654|ref|YP_004245846.1| - 3.4e-06 26.4 7.4 0.00041 19.5 0.7 3.5 4 0 0 4 4 4 2 FAD binding domain NAD_binding_9 PF13454.6 gi|325969654|ref|YP_004245846.1| - 5.2e-06 26.5 3.9 0.26 11.3 0.0 4.1 4 0 0 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|325969654|ref|YP_004245846.1| - 6.1e-06 26.4 1.9 0.0013 18.9 0.2 2.9 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|325969654|ref|YP_004245846.1| - 0.00026 20.1 2.4 0.00075 18.7 0.3 2.3 2 1 1 3 3 3 1 Lycopene cyclase protein 2-Hacid_dh_C PF02826.19 gi|325969654|ref|YP_004245846.1| - 0.00034 20.0 0.1 0.0062 15.9 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|325969654|ref|YP_004245846.1| - 0.0011 18.2 0.0 0.021 14.0 0.0 2.5 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|325969654|ref|YP_004245846.1| - 0.0016 17.6 6.9 0.026 13.6 0.7 3.7 3 1 1 4 4 4 1 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|325969654|ref|YP_004245846.1| - 0.002 17.7 1.1 0.0037 16.9 0.1 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|325969654|ref|YP_004245846.1| - 0.003 18.0 0.1 0.62 10.5 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|325969654|ref|YP_004245846.1| - 0.0034 17.6 0.3 3.2 8.0 0.1 2.7 2 1 0 2 2 2 2 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|325969654|ref|YP_004245846.1| - 0.0042 16.4 2.3 0.037 13.3 1.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|325969654|ref|YP_004245846.1| - 0.018 14.3 1.5 0.091 12.0 0.2 2.4 2 0 0 2 2 2 0 Thi4 family Trp_halogenase PF04820.14 gi|325969654|ref|YP_004245846.1| - 0.023 13.6 0.2 0.023 13.6 0.2 1.8 2 0 0 2 2 2 0 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|325969654|ref|YP_004245846.1| - 0.024 13.9 3.2 1.6 7.9 0.2 2.3 2 0 0 2 2 2 0 FAD binding domain F420_oxidored PF03807.17 gi|325969654|ref|YP_004245846.1| - 0.033 14.8 1.4 0.48 11.0 0.1 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|325969654|ref|YP_004245846.1| - 0.077 12.6 0.1 15 5.1 0.0 2.6 3 0 0 3 3 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|325969654|ref|YP_004245846.1| - 0.19 11.6 2.9 0.22 11.4 0.1 2.1 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|325969654|ref|YP_004245846.1| - 0.23 10.7 1.5 0.38 10.0 1.5 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase TetR_C_5 PF08360.11 gi|325969655|ref|YP_004245847.1| - 0.021 15.0 2.5 0.054 13.7 1.1 2.1 2 0 0 2 2 2 0 QacR-like protein, C-terminal region Rubrerythrin PF02915.17 gi|325969655|ref|YP_004245847.1| - 0.066 13.6 1.8 0.15 12.4 0.5 2.2 2 1 0 2 2 2 0 Rubrerythrin IL31 PF15209.6 gi|325969655|ref|YP_004245847.1| - 0.14 12.0 4.7 0.29 10.9 0.2 2.7 4 0 0 4 4 4 0 Interleukin 31 AA_permease_2 PF13520.6 gi|325969656|ref|YP_004245848.1| - 2.8e-10 39.6 72.3 7.3e-10 38.2 72.3 1.7 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|325969656|ref|YP_004245848.1| - 4.8e-09 35.3 58.4 7.9e-09 34.6 58.4 1.3 1 0 0 1 1 1 1 Amino acid permease Nre_N PF04894.12 gi|325969658|ref|YP_004245850.1| - 4.8e-103 344.7 0.0 5.9e-103 344.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|325969658|ref|YP_004245850.1| - 2.8e-37 127.0 0.0 5.2e-37 126.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Radical_SAM PF04055.21 gi|325969659|ref|YP_004245851.1| - 5.8e-08 33.3 0.0 1.1e-07 32.4 0.0 1.5 1 1 1 2 2 2 1 Radical SAM superfamily CNRIP1 PF15043.6 gi|325969659|ref|YP_004245851.1| - 0.012 15.1 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 CB1 cannabinoid receptor-interacting protein 1 DUF1848 PF08902.11 gi|325969659|ref|YP_004245851.1| - 0.084 12.6 5.5 2.2 8.0 3.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1848) SANT_DAMP1_like PF16282.5 gi|325969659|ref|YP_004245851.1| - 0.094 12.9 0.1 0.21 11.8 0.1 1.7 1 0 0 1 1 1 0 SANT/Myb-like domain of DAMP1 Spheroidin PF05541.12 gi|325969661|ref|YP_004245853.1| - 0.092 10.6 0.0 0.092 10.6 0.0 1.0 1 0 0 1 1 1 0 Entomopoxvirus spheroidin protein MoCF_biosynth PF00994.24 gi|325969663|ref|YP_004245855.1| - 2.3e-32 111.6 0.0 3.2e-32 111.2 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain Resolvase PF00239.21 gi|325969665|ref|YP_004245857.1| - 3e-32 111.7 0.3 3.8e-32 111.4 0.3 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.6 gi|325969665|ref|YP_004245857.1| - 5.9e-06 25.9 0.8 1.5e-05 24.7 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|325969665|ref|YP_004245857.1| - 0.00016 21.1 3.3 0.05 13.1 0.1 2.5 2 0 0 2 2 2 2 Sigma-70, region 4 Complex1_LYR PF05347.15 gi|325969665|ref|YP_004245857.1| - 0.0011 18.9 0.9 0.0031 17.5 0.2 2.1 2 0 0 2 2 2 1 Complex 1 protein (LYR family) HTH_24 PF13412.6 gi|325969665|ref|YP_004245857.1| - 0.0032 17.0 0.6 0.032 13.8 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|325969665|ref|YP_004245857.1| - 0.0081 16.3 0.1 0.024 14.8 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain GCP_N_terminal PF17681.1 gi|325969665|ref|YP_004245857.1| - 0.013 15.1 0.0 0.017 14.8 0.0 1.2 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal Zn_Tnp_IS1595 PF12760.7 gi|325969665|ref|YP_004245857.1| - 0.019 14.9 0.2 7.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|325969665|ref|YP_004245857.1| - 0.032 13.6 0.9 0.6 9.5 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger GerE PF00196.19 gi|325969665|ref|YP_004245857.1| - 0.038 13.5 0.0 0.1 12.2 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|325969665|ref|YP_004245857.1| - 0.039 14.0 0.1 0.069 13.2 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|325969665|ref|YP_004245857.1| - 0.039 14.0 0.1 0.15 12.1 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn helix HTH_50 PF18024.1 gi|325969665|ref|YP_004245857.1| - 0.05 13.2 0.6 0.22 11.2 0.1 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|325969665|ref|YP_004245857.1| - 0.09 12.5 0.1 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Lar_restr_allev PF14354.6 gi|325969665|ref|YP_004245857.1| - 0.13 12.6 0.4 0.23 11.9 0.4 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar HTH_38 PF13936.6 gi|325969665|ref|YP_004245857.1| - 0.16 11.8 1.3 0.2 11.4 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|325969665|ref|YP_004245857.1| - 0.18 11.4 1.6 6.9 6.3 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|325969665|ref|YP_004245857.1| - 0.43 10.4 2.3 2.3 8.0 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|325969665|ref|YP_004245857.1| - 2.7 7.5 4.7 1.5 8.3 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain 2-Hacid_dh_C PF02826.19 gi|325969666|ref|YP_004245858.1| - 1.3e-58 197.2 0.0 2.2e-58 196.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|325969666|ref|YP_004245858.1| - 3.8e-35 120.5 0.2 4.4e-35 120.2 0.2 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|325969666|ref|YP_004245858.1| - 5e-07 30.0 1.3 1e-06 29.0 0.7 1.8 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|325969666|ref|YP_004245858.1| - 1.6e-06 28.3 1.0 1.6e-06 28.3 1.0 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|325969666|ref|YP_004245858.1| - 0.001 18.7 0.6 0.0025 17.4 0.2 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain XdhC_C PF13478.6 gi|325969666|ref|YP_004245858.1| - 0.0084 16.6 0.1 0.024 15.1 0.0 1.8 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|325969666|ref|YP_004245858.1| - 0.014 15.3 0.1 0.032 14.1 0.1 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ish1 PF10281.9 gi|325969666|ref|YP_004245858.1| - 0.027 14.8 0.0 0.089 13.1 0.0 1.8 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein ADH_zinc_N PF00107.26 gi|325969666|ref|YP_004245858.1| - 0.056 13.4 0.1 0.17 11.8 0.0 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Gp_dh_N PF00044.24 gi|325969666|ref|YP_004245858.1| - 0.074 13.4 1.3 0.15 12.4 1.1 1.6 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|325969666|ref|YP_004245858.1| - 0.077 12.3 1.8 0.3 10.4 1.8 1.9 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DrsE PF02635.15 gi|325969668|ref|YP_004245860.1| - 3.3e-13 50.0 0.1 3.8e-13 49.8 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DsrH PF04077.12 gi|325969668|ref|YP_004245860.1| - 3.1e-05 24.0 0.1 4e-05 23.6 0.1 1.1 1 0 0 1 1 1 1 DsrH like protein DrsE_2 PF13686.6 gi|325969668|ref|YP_004245860.1| - 0.0048 16.8 0.0 0.0074 16.2 0.0 1.5 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family SBP_bac_11 PF13531.6 gi|325969669|ref|YP_004245861.1| - 5.5e-08 32.8 0.0 7.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein AP_endonuc_2 PF01261.24 gi|325969670|ref|YP_004245862.1| - 7.5e-25 87.6 0.1 9.4e-25 87.3 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|325969670|ref|YP_004245862.1| - 0.00015 21.1 0.0 0.00028 20.2 0.0 1.4 1 0 0 1 1 1 1 UV-endonuclease UvdE DUF4121 PF13497.6 gi|325969670|ref|YP_004245862.1| - 0.0038 16.4 0.1 0.0062 15.7 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4121) DUF4253 PF14062.6 gi|325969670|ref|YP_004245862.1| - 0.0085 16.2 0.0 0.02 15.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4253) Macro_2 PF14519.6 gi|325969670|ref|YP_004245862.1| - 0.026 13.9 0.1 0.054 12.8 0.1 1.5 1 1 0 1 1 1 0 Macro-like domain DDRGK PF09756.9 gi|325969672|ref|YP_004245864.1| - 0.59 9.7 3.6 2.9 7.4 3.6 2.2 1 1 0 1 1 1 0 DDRGK domain DUF4870 PF09685.10 gi|325969673|ref|YP_004245865.1| - 8.4e-05 22.6 11.8 0.0001 22.4 11.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4870) DUF981 PF06168.11 gi|325969673|ref|YP_004245865.1| - 0.085 12.8 0.9 0.085 12.8 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF981) Tenui_PVC2 PF06656.11 gi|325969673|ref|YP_004245865.1| - 1.8 6.3 4.4 1.8 6.3 4.4 1.1 1 0 0 1 1 1 0 Tenuivirus PVC2 protein TPP_enzyme_N PF02776.18 gi|325969674|ref|YP_004245866.1| - 0.084 12.5 0.1 0.18 11.4 0.1 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF4320 PF14208.6 gi|325969675|ref|YP_004245867.1| - 0.082 13.0 0.3 0.17 12.0 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4320) TFR_dimer PF04253.15 gi|325969676|ref|YP_004245868.1| - 0.0082 16.2 0.0 0.009 16.1 0.0 1.1 1 0 0 1 1 1 1 Transferrin receptor-like dimerisation domain HsbA PF12296.8 gi|325969676|ref|YP_004245868.1| - 0.012 16.1 1.5 0.037 14.4 1.4 1.8 1 1 0 1 1 1 0 Hydrophobic surface binding protein A DUF5344 PF17279.2 gi|325969676|ref|YP_004245868.1| - 0.017 15.7 1.0 0.032 14.8 1.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5344) PilJ PF13675.6 gi|325969676|ref|YP_004245868.1| - 0.028 14.4 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term FlaC_arch PF05377.11 gi|325969676|ref|YP_004245868.1| - 0.08 13.3 4.5 0.37 11.2 0.6 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) RuvC_III PF18541.1 gi|325969676|ref|YP_004245868.1| - 0.1 12.6 0.1 0.11 12.4 0.1 1.1 1 0 0 1 1 1 0 RuvC endonuclease subdomain 3 TetR_C_27 PF17935.1 gi|325969676|ref|YP_004245868.1| - 0.12 12.5 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MAPKK1_Int PF08923.10 gi|325969677|ref|YP_004245869.1| - 8.9e-05 22.3 0.3 9.8e-05 22.2 0.3 1.1 1 0 0 1 1 1 1 Mitogen-activated protein kinase kinase 1 interacting Robl_LC7 PF03259.17 gi|325969677|ref|YP_004245869.1| - 0.00021 21.0 0.1 0.00026 20.7 0.1 1.1 1 0 0 1 1 1 1 Roadblock/LC7 domain AAA_31 PF13614.6 gi|325969679|ref|YP_004245871.1| - 1.1e-16 61.2 0.0 1.7e-16 60.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|325969679|ref|YP_004245871.1| - 1.4e-12 47.8 0.0 2.7e-12 46.8 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|325969679|ref|YP_004245871.1| - 9.8e-07 28.5 0.0 1.9e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|325969679|ref|YP_004245871.1| - 4.1e-06 26.5 0.2 0.00035 20.1 0.2 2.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|325969679|ref|YP_004245871.1| - 2.9e-05 23.4 5.2 0.00039 19.7 1.4 3.4 3 1 0 3 3 3 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|325969679|ref|YP_004245871.1| - 4.3e-05 23.3 0.6 0.00048 19.9 0.6 2.5 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|325969679|ref|YP_004245871.1| - 5.3e-05 22.6 0.0 0.012 15.0 0.0 2.4 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|325969679|ref|YP_004245871.1| - 7.6e-05 22.3 0.7 0.00028 20.4 0.7 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|325969679|ref|YP_004245871.1| - 0.00064 19.4 0.1 0.0022 17.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|325969679|ref|YP_004245871.1| - 0.002 18.2 0.3 0.62 10.1 0.0 3.3 2 1 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|325969679|ref|YP_004245871.1| - 0.0064 15.8 0.1 0.01 15.2 0.1 1.3 1 0 0 1 1 1 1 VirC1 protein CLP1_P PF16575.5 gi|325969679|ref|YP_004245871.1| - 0.033 14.0 0.1 0.38 10.5 0.0 2.5 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DnaB_C PF03796.15 gi|325969679|ref|YP_004245871.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain GATase_6 PF13522.6 gi|325969680|ref|YP_004245872.1| - 0.00024 21.3 0.0 0.0004 20.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain Crystall PF00030.19 gi|325969680|ref|YP_004245872.1| - 0.081 13.1 0.2 0.14 12.4 0.2 1.4 1 0 0 1 1 1 0 Beta/Gamma crystallin 53-BP1_Tudor PF09038.10 gi|325969680|ref|YP_004245872.1| - 0.093 12.7 0.1 0.22 11.5 0.1 1.6 1 0 0 1 1 1 0 Tumour suppressor p53-binding protein-1 Tudor Radical_SAM PF04055.21 gi|325969681|ref|YP_004245873.1| - 6.9e-20 72.1 0.0 6.5e-19 68.9 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|325969681|ref|YP_004245873.1| - 1.2e-18 67.2 0.0 2.8e-18 66.0 0.0 1.7 1 0 0 1 1 1 1 Wyosine base formation DUF3883 PF13020.6 gi|325969681|ref|YP_004245873.1| - 0.034 14.2 0.0 0.072 13.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) TrmO PF01980.16 gi|325969682|ref|YP_004245874.1| - 1.1e-29 103.0 0.0 2e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 tRNA-methyltransferase O PPC PF04151.15 gi|325969683|ref|YP_004245875.1| - 0.1 13.7 3.1 0.74 10.9 0.3 3.1 2 2 1 3 3 3 0 Bacterial pre-peptidase C-terminal domain Wzt_C PF14524.6 gi|325969688|ref|YP_004245880.1| - 0.062 13.3 0.2 0.3 11.1 0.1 2.0 1 1 0 1 1 1 0 Wzt C-terminal domain Methyltransf_23 PF13489.6 gi|325969689|ref|YP_004245881.1| - 1.6e-15 57.3 0.0 1.9e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|325969689|ref|YP_004245881.1| - 1.8e-14 54.1 0.0 3.4e-14 53.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325969689|ref|YP_004245881.1| - 4.2e-13 49.8 0.0 7e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|325969689|ref|YP_004245881.1| - 7.8e-12 45.8 0.0 1.4e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|325969689|ref|YP_004245881.1| - 3.4e-08 33.4 0.0 6.1e-08 32.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|325969689|ref|YP_004245881.1| - 3.9e-07 29.7 0.0 5e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|325969689|ref|YP_004245881.1| - 0.014 14.8 0.0 0.022 14.2 0.0 1.4 1 1 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.19 gi|325969689|ref|YP_004245881.1| - 0.037 13.8 0.0 0.054 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|325969689|ref|YP_004245881.1| - 0.097 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|325969689|ref|YP_004245881.1| - 0.11 11.7 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain Form-deh_trans PF09163.11 gi|325969690|ref|YP_004245882.1| - 0.32 10.8 1.1 0.48 10.2 1.1 1.3 1 0 0 1 1 1 0 Formate dehydrogenase N, transmembrane PmbA_TldD PF01523.16 gi|325969691|ref|YP_004245883.1| - 5.8e-29 101.8 0.2 8e-29 101.4 0.2 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|325969692|ref|YP_004245884.1| - 1.6e-50 172.5 0.4 2.2e-50 172.1 0.4 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase AvrM_N PF18247.1 gi|325969692|ref|YP_004245884.1| - 0.057 13.4 0.2 0.15 12.0 0.2 1.7 1 0 0 1 1 1 0 Flax-rust effector AvrM N-terminal domain bPH_2 PF03703.14 gi|325969693|ref|YP_004245885.1| - 0.00019 21.6 0.0 0.0003 20.9 0.0 1.3 1 1 0 1 1 1 1 Bacterial PH domain ABC_tran PF00005.27 gi|325969694|ref|YP_004245886.1| - 1e-26 94.1 0.0 1.3e-26 93.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|325969694|ref|YP_004245886.1| - 1.1e-20 73.9 0.0 1.9e-20 73.1 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|325969694|ref|YP_004245886.1| - 6.9e-08 32.7 0.9 2.5e-05 24.3 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|325969694|ref|YP_004245886.1| - 4e-06 26.5 0.0 7.5e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|325969694|ref|YP_004245886.1| - 1.2e-05 25.6 0.1 0.0001 22.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|325969694|ref|YP_004245886.1| - 2e-05 24.2 0.0 3.6e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|325969694|ref|YP_004245886.1| - 3.3e-05 23.4 0.1 1.4 8.3 0.1 3.1 2 1 1 3 3 3 2 Bacterial TniB protein IstB_IS21 PF01695.17 gi|325969694|ref|YP_004245886.1| - 7.1e-05 22.6 0.2 0.01 15.6 0.0 2.5 3 0 0 3 3 3 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|325969694|ref|YP_004245886.1| - 0.00022 21.7 0.0 0.00043 20.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|325969694|ref|YP_004245886.1| - 0.0013 18.4 0.1 0.0062 16.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|325969694|ref|YP_004245886.1| - 0.0054 17.1 0.0 0.033 14.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|325969694|ref|YP_004245886.1| - 0.027 14.4 0.2 0.19 11.7 0.0 2.0 1 1 1 2 2 2 0 NACHT domain DUF5100 PF17029.5 gi|325969694|ref|YP_004245886.1| - 0.028 14.3 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5100) Mg_chelatase PF01078.21 gi|325969694|ref|YP_004245886.1| - 0.043 13.2 0.1 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|325969694|ref|YP_004245886.1| - 0.047 13.7 0.1 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|325969694|ref|YP_004245886.1| - 0.047 13.8 0.1 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain Phage_antitermQ PF06530.12 gi|325969694|ref|YP_004245886.1| - 0.064 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q AAA_24 PF13479.6 gi|325969694|ref|YP_004245886.1| - 0.11 12.2 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|325969694|ref|YP_004245886.1| - 0.12 11.7 0.2 9.7 5.4 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain RsgA_GTPase PF03193.16 gi|325969694|ref|YP_004245886.1| - 0.13 12.2 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|325969694|ref|YP_004245886.1| - 0.14 12.7 0.0 0.33 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|325969694|ref|YP_004245886.1| - 0.19 11.8 0.1 0.68 10.0 0.1 1.9 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|325969695|ref|YP_004245887.1| - 2.9e-33 115.3 0.0 4e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|325969695|ref|YP_004245887.1| - 4.4e-19 68.8 0.0 7.8e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|325969695|ref|YP_004245887.1| - 6.2e-08 32.8 1.8 0.00011 22.2 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|325969695|ref|YP_004245887.1| - 3.4e-06 27.4 0.9 2.4e-05 24.6 0.9 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|325969695|ref|YP_004245887.1| - 3.4e-06 26.6 0.2 1.4e-05 24.6 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|325969695|ref|YP_004245887.1| - 0.0012 19.3 0.0 0.002 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|325969695|ref|YP_004245887.1| - 0.002 17.8 0.1 0.0035 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|325969695|ref|YP_004245887.1| - 0.0022 17.6 1.0 0.9 9.1 0.3 2.2 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|325969695|ref|YP_004245887.1| - 0.0024 18.3 0.0 0.036 14.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|325969695|ref|YP_004245887.1| - 0.0039 15.9 0.2 0.67 8.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|325969695|ref|YP_004245887.1| - 0.007 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase SbcCD_C PF13558.6 gi|325969695|ref|YP_004245887.1| - 0.012 15.8 0.1 0.12 12.6 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.6 gi|325969695|ref|YP_004245887.1| - 0.023 15.1 0.0 0.034 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|325969695|ref|YP_004245887.1| - 0.041 13.6 0.0 0.095 12.4 0.0 1.5 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|325969695|ref|YP_004245887.1| - 0.046 14.2 0.0 0.072 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|325969695|ref|YP_004245887.1| - 0.067 13.1 0.3 0.42 10.5 0.1 2.0 2 0 0 2 2 2 0 NACHT domain PduV-EutP PF10662.9 gi|325969695|ref|YP_004245887.1| - 0.089 12.5 0.0 0.9 9.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|325969695|ref|YP_004245887.1| - 0.15 12.6 0.0 0.31 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|325969695|ref|YP_004245887.1| - 0.17 11.8 0.4 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SBP_bac_5 PF00496.22 gi|325969696|ref|YP_004245888.1| - 4.2e-65 220.2 4.1 6.6e-65 219.5 4.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|325969697|ref|YP_004245889.1| - 1e-44 152.5 15.5 1e-44 152.5 15.5 2.3 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component E1-E2_ATPase PF00122.20 gi|325969697|ref|YP_004245889.1| - 0.017 14.7 4.7 0.017 14.7 4.7 2.6 3 0 0 3 3 3 0 E1-E2 ATPase UL42 PF17638.2 gi|325969697|ref|YP_004245889.1| - 7.6 6.5 8.4 17 5.4 0.2 3.5 4 0 0 4 4 4 0 HCMV UL42 BPD_transp_1 PF00528.22 gi|325969698|ref|YP_004245890.1| - 4.1e-26 91.8 12.1 4.1e-26 91.8 12.1 2.5 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF3169 PF11368.8 gi|325969698|ref|YP_004245890.1| - 0.023 14.2 1.7 0.046 13.2 1.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3169) DUF4330 PF14221.6 gi|325969699|ref|YP_004245891.1| - 0.099 12.9 1.9 0.2 11.9 1.9 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Abhydrolase_3 PF07859.13 gi|325969700|ref|YP_004245892.1| - 2.2e-74 249.9 0.0 2.7e-74 249.6 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|325969700|ref|YP_004245892.1| - 4.9e-14 52.1 0.2 1.7e-13 50.3 0.2 1.7 1 1 0 1 1 1 1 Carboxylesterase family Chlorophyllase2 PF12740.7 gi|325969700|ref|YP_004245892.1| - 5.2e-06 25.6 0.0 7.2e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Peptidase_S9 PF00326.21 gi|325969700|ref|YP_004245892.1| - 0.00013 21.5 0.0 0.0011 18.4 0.0 2.0 1 1 0 1 1 1 1 Prolyl oligopeptidase family Say1_Mug180 PF10340.9 gi|325969700|ref|YP_004245892.1| - 0.00021 20.3 0.0 0.00027 19.9 0.0 1.3 1 0 0 1 1 1 1 Steryl acetyl hydrolase Chlorophyllase PF07224.11 gi|325969700|ref|YP_004245892.1| - 0.0007 18.7 0.0 0.00098 18.2 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase Abhydrolase_6 PF12697.7 gi|325969700|ref|YP_004245892.1| - 0.0021 18.7 0.4 0.0034 18.0 0.4 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.12 gi|325969700|ref|YP_004245892.1| - 0.0041 15.8 0.0 1.1 7.8 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Thioesterase PF00975.20 gi|325969700|ref|YP_004245892.1| - 0.023 14.8 0.0 0.043 13.9 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain DUF2974 PF11187.8 gi|325969700|ref|YP_004245892.1| - 0.058 12.9 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2974) Hydrolase_4 PF12146.8 gi|325969700|ref|YP_004245892.1| - 0.064 12.5 0.0 0.12 11.6 0.0 1.5 1 1 0 1 1 1 0 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|325969700|ref|YP_004245892.1| - 0.14 11.8 0.0 0.63 9.6 0.0 1.8 1 1 1 2 2 2 0 alpha/beta hydrolase fold FeoA PF04023.14 gi|325969701|ref|YP_004245893.1| - 4.2e-05 23.7 0.0 5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 FeoA domain FeoB_N PF02421.18 gi|325969702|ref|YP_004245894.1| - 2.8e-43 147.1 0.3 4.3e-43 146.5 0.3 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|325969702|ref|YP_004245894.1| - 2.7e-27 95.3 18.4 3.2e-21 75.7 7.7 2.7 2 0 0 2 2 2 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|325969702|ref|YP_004245894.1| - 1.1e-13 51.3 0.0 2.1e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|325969702|ref|YP_004245894.1| - 3.7e-05 23.2 0.1 6.1e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|325969702|ref|YP_004245894.1| - 0.0032 17.0 0.4 0.18 11.3 0.3 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain FeoB_C PF07664.12 gi|325969702|ref|YP_004245894.1| - 0.0044 16.7 1.5 0.0044 16.7 1.5 3.3 2 0 0 2 2 2 1 Ferrous iron transport protein B C terminus Arf PF00025.21 gi|325969702|ref|YP_004245894.1| - 0.034 13.6 0.0 0.089 12.2 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family ATP_bind_1 PF03029.17 gi|325969702|ref|YP_004245894.1| - 0.065 13.0 0.7 11 5.7 0.2 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ALAD PF00490.21 gi|325969704|ref|YP_004245896.1| - 1.9e-147 490.5 0.1 2.2e-147 490.3 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Aminotran_1_2 PF00155.21 gi|325969705|ref|YP_004245897.1| - 1e-44 153.3 0.0 1.1e-44 153.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|325969705|ref|YP_004245897.1| - 3.1e-16 59.2 0.0 3.9e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase DegT_DnrJ_EryC1 PF01041.17 gi|325969705|ref|YP_004245897.1| - 0.00042 19.7 0.0 0.00065 19.1 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Phage_sheath_1 PF04984.14 gi|325969705|ref|YP_004245897.1| - 0.082 12.8 0.0 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 Phage tail sheath protein subtilisin-like domain Beta_elim_lyase PF01212.21 gi|325969705|ref|YP_004245897.1| - 0.21 10.8 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase DUF87 PF01935.17 gi|325969706|ref|YP_004245898.1| - 6e-10 39.6 0.0 1.5e-09 38.3 0.0 1.7 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|325969706|ref|YP_004245898.1| - 3.5e-05 24.1 0.4 0.051 13.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.9 gi|325969706|ref|YP_004245898.1| - 4.3e-05 22.6 0.0 0.00025 20.1 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|325969706|ref|YP_004245898.1| - 0.00014 21.0 0.9 0.02 13.8 0.1 2.5 2 1 0 2 2 2 2 AAA-like domain AAA PF00004.29 gi|325969706|ref|YP_004245898.1| - 0.001 19.5 0.3 0.46 10.9 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|325969706|ref|YP_004245898.1| - 0.0048 16.8 0.2 0.038 13.9 0.0 2.2 2 0 0 2 2 2 1 Rad17 P-loop domain MeaB PF03308.16 gi|325969706|ref|YP_004245898.1| - 0.0062 15.5 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|325969706|ref|YP_004245898.1| - 0.0074 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|325969706|ref|YP_004245898.1| - 0.011 15.7 0.2 0.17 11.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|325969706|ref|YP_004245898.1| - 0.012 15.6 0.7 0.11 12.3 0.1 2.6 3 0 0 3 3 3 0 NACHT domain Zeta_toxin PF06414.12 gi|325969706|ref|YP_004245898.1| - 0.012 14.9 0.0 0.032 13.5 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.22 gi|325969706|ref|YP_004245898.1| - 0.02 15.3 0.0 0.06 13.7 0.0 1.8 1 0 0 1 1 1 0 RNA helicase KAP_NTPase PF07693.14 gi|325969706|ref|YP_004245898.1| - 0.034 13.4 0.0 0.055 12.7 0.0 1.5 1 1 0 1 1 1 0 KAP family P-loop domain NTPase_1 PF03266.15 gi|325969706|ref|YP_004245898.1| - 0.042 13.8 0.1 0.19 11.6 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.6 gi|325969706|ref|YP_004245898.1| - 0.042 14.2 0.0 0.086 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|325969706|ref|YP_004245898.1| - 0.061 12.7 0.2 0.17 11.2 0.2 1.8 1 0 0 1 1 1 0 KaiC ATPase_2 PF01637.18 gi|325969706|ref|YP_004245898.1| - 0.078 12.9 0.5 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|325969706|ref|YP_004245898.1| - 0.14 12.5 0.1 0.39 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|325969706|ref|YP_004245898.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|325969706|ref|YP_004245898.1| - 0.18 11.1 0.3 0.51 9.6 0.1 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_11 PF13086.6 gi|325969706|ref|YP_004245898.1| - 0.19 11.5 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain MTHFR PF02219.17 gi|325969707|ref|YP_004245899.1| - 0.013 14.8 0.0 0.18 11.1 0.0 2.0 1 1 0 1 1 1 0 Methylenetetrahydrofolate reductase DUF4159 PF13709.6 gi|325969707|ref|YP_004245899.1| - 0.018 14.5 0.0 0.038 13.4 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) MMR_HSR1_Xtn PF16897.5 gi|325969707|ref|YP_004245899.1| - 0.038 14.0 0.2 0.66 10.0 0.3 2.3 1 1 1 2 2 2 0 C-terminal region of MMR_HSR1 domain ParA PF10609.9 gi|325969708|ref|YP_004245900.1| - 8.5e-88 293.9 0.0 1e-87 293.7 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|325969708|ref|YP_004245900.1| - 3.4e-12 46.5 0.0 2.3e-11 43.9 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|325969708|ref|YP_004245900.1| - 0.00027 20.9 0.2 0.0014 18.6 0.1 2.0 1 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|325969708|ref|YP_004245900.1| - 0.00028 20.2 0.6 0.00053 19.3 0.6 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|325969708|ref|YP_004245900.1| - 0.0089 15.6 0.2 0.017 14.7 0.2 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|325969708|ref|YP_004245900.1| - 0.031 13.7 0.1 0.17 11.3 0.1 2.0 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MeaB PF03308.16 gi|325969708|ref|YP_004245900.1| - 0.046 12.7 0.2 0.081 11.9 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|325969708|ref|YP_004245900.1| - 0.057 12.7 0.0 0.099 11.9 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ RC-P840_PscD PF10657.9 gi|325969708|ref|YP_004245900.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Photosystem P840 reaction centre protein PscD AAA_26 PF13500.6 gi|325969708|ref|YP_004245900.1| - 0.1 12.4 0.1 17 5.2 0.1 2.2 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|325969709|ref|YP_004245901.1| - 5.2e-59 199.1 0.0 7.5e-59 198.5 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|325969709|ref|YP_004245901.1| - 5.5e-29 100.4 0.0 1.8e-28 98.8 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|325969709|ref|YP_004245901.1| - 1.9e-23 82.4 0.1 4.6e-23 81.1 0.1 1.7 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|325969709|ref|YP_004245901.1| - 4.9e-23 81.0 0.0 1.4e-22 79.5 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|325969709|ref|YP_004245901.1| - 5.5e-16 58.7 0.1 1.6e-15 57.2 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|325969709|ref|YP_004245901.1| - 0.0033 17.5 0.0 0.0075 16.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|325969709|ref|YP_004245901.1| - 0.029 14.2 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain Reprolysin_5 PF13688.6 gi|325969710|ref|YP_004245902.1| - 0.075 13.2 1.8 0.17 12.1 1.1 1.9 2 1 0 2 2 2 0 Metallo-peptidase family M12 Lactamase_B PF00753.27 gi|325969711|ref|YP_004245903.1| - 1.3e-12 48.2 1.0 1.6e-12 47.8 1.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|325969711|ref|YP_004245903.1| - 1.1e-06 28.4 0.0 1.5e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Toxin_6 PF05453.12 gi|325969711|ref|YP_004245903.1| - 0.14 12.7 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 BmTXKS1/BmP02 toxin family SWIM PF04434.17 gi|325969712|ref|YP_004245904.1| - 0.044 13.5 0.1 0.06 13.0 0.1 1.3 1 0 0 1 1 1 0 SWIM zinc finger MaoC_dehydratas PF01575.19 gi|325969714|ref|YP_004245906.1| - 1.8e-25 88.9 0.0 2.3e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|325969714|ref|YP_004245906.1| - 1.1e-08 35.3 0.0 1.9e-08 34.5 0.0 1.4 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|325969714|ref|YP_004245906.1| - 7.7e-05 23.0 0.1 0.00028 21.2 0.1 2.0 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|325969714|ref|YP_004245906.1| - 0.071 13.6 0.0 0.083 13.4 0.0 1.3 1 1 0 1 1 1 0 Thioesterase-like superfamily Radical_SAM PF04055.21 gi|325969715|ref|YP_004245907.1| - 4.5e-21 75.9 0.1 6.3e-21 75.5 0.1 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|325969715|ref|YP_004245907.1| - 0.00015 21.9 0.0 0.00029 20.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|325969715|ref|YP_004245907.1| - 0.0015 18.8 0.0 0.0047 17.2 0.0 1.7 1 1 1 2 2 2 1 4Fe-4S single cluster domain Haem_degrading PF03928.14 gi|325969717|ref|YP_004245909.1| - 1.2e-45 154.4 0.3 1.8e-26 92.5 0.5 2.0 2 0 0 2 2 2 2 Haem-degrading GAF_2 PF13185.6 gi|325969717|ref|YP_004245909.1| - 0.01 16.2 0.1 0.16 12.2 0.0 2.5 2 1 0 2 2 2 0 GAF domain DAO PF01266.24 gi|325969718|ref|YP_004245910.1| - 9.8e-45 153.7 0.0 1.1e-44 153.5 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|325969718|ref|YP_004245910.1| - 2.5e-10 40.1 0.2 6.1e-06 25.7 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|325969718|ref|YP_004245910.1| - 6.7e-10 39.1 0.1 2.2e-09 37.4 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|325969718|ref|YP_004245910.1| - 1.1e-08 35.5 1.4 0.00066 20.2 0.1 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|325969718|ref|YP_004245910.1| - 2.6e-06 26.7 0.3 0.00021 20.5 0.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|325969718|ref|YP_004245910.1| - 6.1e-06 25.7 0.0 0.00033 20.0 0.1 2.3 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|325969718|ref|YP_004245910.1| - 1.3e-05 24.1 0.8 0.0094 14.7 0.2 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|325969718|ref|YP_004245910.1| - 0.00013 21.4 1.8 0.059 12.6 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|325969718|ref|YP_004245910.1| - 0.00037 19.7 0.5 0.0029 16.7 0.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|325969718|ref|YP_004245910.1| - 0.0011 17.9 0.6 0.39 9.5 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase TrkA_N PF02254.18 gi|325969718|ref|YP_004245910.1| - 0.0012 19.1 0.2 0.0026 18.0 0.2 1.6 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_9 PF13454.6 gi|325969718|ref|YP_004245910.1| - 0.004 17.2 0.2 0.14 12.1 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|325969718|ref|YP_004245910.1| - 0.0045 16.3 0.0 0.28 10.4 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|325969718|ref|YP_004245910.1| - 0.0056 15.8 0.3 0.021 13.9 0.2 1.8 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|325969718|ref|YP_004245910.1| - 0.0066 15.7 0.1 0.027 13.7 0.1 1.9 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|325969718|ref|YP_004245910.1| - 0.013 15.4 1.2 0.038 13.9 0.1 2.2 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_oxidored PF12831.7 gi|325969718|ref|YP_004245910.1| - 0.061 12.7 0.1 3.3 6.9 0.2 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|325969718|ref|YP_004245910.1| - 0.099 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1188 PF06690.11 gi|325969718|ref|YP_004245910.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) Radical_SAM PF04055.21 gi|325969719|ref|YP_004245911.1| - 6.4e-22 78.7 0.2 2.3e-21 76.9 0.1 1.9 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|325969719|ref|YP_004245911.1| - 0.00016 22.0 0.0 0.00031 21.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|325969719|ref|YP_004245911.1| - 0.00028 21.0 0.0 0.00058 20.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_27 PF13463.6 gi|325969721|ref|YP_004245913.1| - 0.012 16.1 0.0 0.016 15.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain BPD_transp_1 PF00528.22 gi|325969722|ref|YP_004245914.1| - 1.5e-18 67.2 50.1 5.3e-12 45.9 22.8 4.3 1 1 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|325969723|ref|YP_004245915.1| - 5.9e-15 56.0 0.3 1.5e-14 54.7 0.3 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|325969723|ref|YP_004245915.1| - 7.2e-09 35.9 0.1 1.9e-08 34.5 0.1 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|325969723|ref|YP_004245915.1| - 0.019 14.7 0.2 0.95 9.1 0.0 2.5 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Lactamase_B_2 PF12706.7 gi|325969724|ref|YP_004245916.1| - 3.5e-23 82.2 0.1 4.2e-23 81.9 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|325969724|ref|YP_004245916.1| - 4.2e-10 39.9 1.7 1.7e-09 38.0 1.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|325969724|ref|YP_004245916.1| - 3e-08 33.7 0.0 4.8e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|325969724|ref|YP_004245916.1| - 4.5e-06 26.2 0.0 8.7e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_4 PF13691.6 gi|325969724|ref|YP_004245916.1| - 0.00026 20.6 0.0 0.00054 19.6 0.0 1.5 1 0 0 1 1 1 1 tRNase Z endonuclease DUF4064 PF13273.6 gi|325969725|ref|YP_004245917.1| - 1.5 9.2 17.7 1.9 8.8 0.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF4064) Epimerase PF01370.21 gi|325969726|ref|YP_004245918.1| - 1.1e-19 70.9 0.0 1.5e-19 70.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|325969726|ref|YP_004245918.1| - 1.4e-07 31.2 0.1 6e-07 29.2 0.1 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|325969726|ref|YP_004245918.1| - 6e-07 28.8 0.0 3.7e-06 26.2 0.0 2.1 2 1 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|325969726|ref|YP_004245918.1| - 2.1e-05 23.8 0.0 3.1e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein 3Beta_HSD PF01073.19 gi|325969726|ref|YP_004245918.1| - 0.00024 20.2 0.0 0.0003 19.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Shikimate_DH PF01488.20 gi|325969726|ref|YP_004245918.1| - 0.0044 17.1 0.0 0.013 15.6 0.0 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|325969726|ref|YP_004245918.1| - 0.0095 16.2 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DUF3925 PF13063.6 gi|325969726|ref|YP_004245918.1| - 0.043 14.0 0.7 5.3 7.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3925) NAD_binding_10 PF13460.6 gi|325969726|ref|YP_004245918.1| - 0.092 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding MFS_1 PF07690.16 gi|325969727|ref|YP_004245919.1| - 1.8e-41 142.2 72.6 8.1e-39 133.5 68.1 3.6 2 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|325969727|ref|YP_004245919.1| - 0.00012 21.1 35.8 0.0002 20.3 20.2 2.6 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|325969727|ref|YP_004245919.1| - 0.0022 16.5 9.9 0.0022 16.5 9.9 2.6 2 0 0 2 2 2 1 Transmembrane secretion effector OATP PF03137.20 gi|325969727|ref|YP_004245919.1| - 0.016 13.5 0.4 0.016 13.5 0.4 3.6 2 2 2 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family ENTH PF01417.20 gi|325969728|ref|YP_004245920.1| - 0.051 13.6 0.1 0.051 13.6 0.1 1.1 1 0 0 1 1 1 0 ENTH domain FMN_dh PF01070.18 gi|325969729|ref|YP_004245921.1| - 3.2e-22 79.0 1.5 2.5e-19 69.5 1.5 2.2 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|325969729|ref|YP_004245921.1| - 1.1e-07 31.4 0.4 4.2e-06 26.1 0.2 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase IMPDH PF00478.25 gi|325969729|ref|YP_004245921.1| - 1.4e-05 24.3 5.9 0.00026 20.1 4.6 2.8 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|325969729|ref|YP_004245921.1| - 0.22 10.7 5.0 0.21 10.8 3.1 2.0 2 1 0 2 2 2 0 Dihydroorotate dehydrogenase Zn_Tnp_IS1595 PF12760.7 gi|325969730|ref|YP_004245922.1| - 0.00039 20.3 0.2 0.0047 16.9 0.1 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|325969730|ref|YP_004245922.1| - 0.001 18.9 3.5 0.12 12.3 3.5 2.3 1 1 0 1 1 1 1 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.6 gi|325969730|ref|YP_004245922.1| - 0.0046 17.3 0.1 0.0079 16.6 0.1 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|325969730|ref|YP_004245922.1| - 0.0065 16.0 0.2 0.013 15.0 0.2 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|325969730|ref|YP_004245922.1| - 0.013 15.5 0.1 0.035 14.0 0.1 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain SPACA9 PF15120.6 gi|325969730|ref|YP_004245922.1| - 0.014 15.1 0.3 0.018 14.8 0.3 1.1 1 0 0 1 1 1 0 Sperm acrosome-associated protein 9 DUF2387 PF09526.10 gi|325969730|ref|YP_004245922.1| - 0.047 13.9 0.3 0.12 12.5 0.3 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-TFIIB PF13453.6 gi|325969730|ref|YP_004245922.1| - 0.059 12.7 0.6 0.11 11.9 0.6 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|325969730|ref|YP_004245922.1| - 0.08 13.1 0.2 3.6 7.8 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DEK_C PF08766.11 gi|325969730|ref|YP_004245922.1| - 0.085 12.8 0.0 0.23 11.4 0.0 1.8 1 1 0 1 1 1 0 DEK C terminal domain HypA PF01155.19 gi|325969730|ref|YP_004245922.1| - 0.13 12.3 1.8 6.1 6.9 0.1 3.0 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA eIF-5_eIF-2B PF01873.17 gi|325969730|ref|YP_004245922.1| - 0.33 10.8 4.4 0.25 11.2 0.6 2.2 2 1 0 2 2 2 0 Domain found in IF2B/IF5 DUF2752 PF10825.8 gi|325969730|ref|YP_004245922.1| - 1.5 8.9 3.6 1.9 8.6 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2752) UPF0547 PF10571.9 gi|325969730|ref|YP_004245922.1| - 1.8 8.7 6.9 3.6 7.7 0.4 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Ribosomal_L2_C PF03947.18 gi|325969731|ref|YP_004245923.1| - 3.7e-43 146.7 0.8 5.9e-43 146.1 0.8 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|325969731|ref|YP_004245923.1| - 4.2e-13 49.1 0.0 1.1e-12 47.7 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain tRNA_int_endo PF01974.17 gi|325969732|ref|YP_004245924.1| - 1.2e-08 34.9 0.0 1.8e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain Radical_SAM PF04055.21 gi|325969734|ref|YP_004245926.1| - 2.6e-11 44.2 0.0 8.7e-11 42.5 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|325969734|ref|YP_004245926.1| - 5.1e-07 29.8 0.0 9.3e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|325969734|ref|YP_004245926.1| - 3.8e-06 27.2 0.0 6.2e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Rhomboid PF01694.22 gi|325969735|ref|YP_004245927.1| - 1.5e-19 70.5 10.4 1.5e-19 70.5 10.4 1.5 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|325969735|ref|YP_004245927.1| - 0.00026 21.5 1.4 0.00026 21.5 1.4 2.1 2 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) Romo1 PF10247.9 gi|325969735|ref|YP_004245927.1| - 0.078 13.4 5.0 3.6 8.0 0.3 2.5 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 DUF1361 PF07099.11 gi|325969736|ref|YP_004245928.1| - 0.0002 21.4 0.4 0.00042 20.3 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1361) Rep_3 PF01051.21 gi|325969736|ref|YP_004245928.1| - 0.35 10.7 9.1 0.023 14.5 2.4 2.4 2 1 0 2 2 2 0 Initiator Replication protein DUF72 PF01904.18 gi|325969740|ref|YP_004245932.1| - 1.2e-44 153.0 0.1 1.5e-44 152.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Sugar_tr PF00083.24 gi|325969741|ref|YP_004245933.1| - 5.5e-16 58.5 12.8 5.5e-16 58.5 12.8 2.1 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325969741|ref|YP_004245933.1| - 3.7e-14 52.4 54.7 3.7e-14 52.4 54.7 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily UbiA PF01040.18 gi|325969742|ref|YP_004245934.1| - 6.6e-23 81.3 25.1 6.6e-23 81.3 25.1 1.9 1 1 1 2 2 2 1 UbiA prenyltransferase family UbiD PF01977.16 gi|325969743|ref|YP_004245935.1| - 4.9e-107 358.3 0.0 5.6e-107 358.1 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NAD_binding_2 PF03446.15 gi|325969744|ref|YP_004245936.1| - 4.6e-24 85.4 0.0 7.2e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|325969744|ref|YP_004245936.1| - 1.2e-10 41.7 0.0 1.8e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|325969744|ref|YP_004245936.1| - 1.2e-05 25.8 0.0 2.6e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|325969744|ref|YP_004245936.1| - 2.9e-05 23.5 0.1 4.4e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|325969744|ref|YP_004245936.1| - 0.0013 18.6 0.5 0.0034 17.3 0.1 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DpaA_N PF16924.5 gi|325969744|ref|YP_004245936.1| - 0.0067 16.5 0.1 0.026 14.6 0.0 1.9 2 0 0 2 2 2 1 Dipicolinate synthase subunit A N-terminal domain IlvN PF07991.12 gi|325969744|ref|YP_004245936.1| - 0.0068 16.0 0.1 0.019 14.5 0.0 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|325969744|ref|YP_004245936.1| - 0.0081 16.4 0.1 0.068 13.4 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|325969744|ref|YP_004245936.1| - 0.14 11.7 1.7 0.2 11.2 0.5 1.8 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RHH_1 PF01402.21 gi|325969746|ref|YP_004245938.1| - 1.9e-05 24.4 0.5 7e-05 22.6 0.0 2.2 3 0 0 3 3 3 1 Ribbon-helix-helix protein, copG family TMPIT PF07851.13 gi|325969746|ref|YP_004245938.1| - 0.24 10.6 2.3 0.32 10.2 2.3 1.1 1 0 0 1 1 1 0 TMPIT-like protein polyprenyl_synt PF00348.17 gi|325969747|ref|YP_004245939.1| - 1.2e-45 155.6 0.1 1.6e-45 155.2 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF2120 PF09893.9 gi|325969747|ref|YP_004245939.1| - 0.053 13.6 0.4 0.1 12.7 0.4 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) FAD_binding_3 PF01494.19 gi|325969748|ref|YP_004245940.1| - 4.7e-15 55.7 0.7 9.5e-06 25.1 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.24 gi|325969748|ref|YP_004245940.1| - 1.1e-06 28.5 0.2 0.00064 19.4 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|325969748|ref|YP_004245940.1| - 4.5e-05 23.6 0.1 0.00027 21.1 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|325969748|ref|YP_004245940.1| - 9.2e-05 21.8 0.0 0.00015 21.1 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|325969748|ref|YP_004245940.1| - 0.00023 20.5 0.6 0.073 12.3 0.1 2.4 2 0 0 2 2 2 2 Thi4 family Lycopene_cycl PF05834.12 gi|325969748|ref|YP_004245940.1| - 0.0006 19.0 0.1 0.0085 15.2 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|325969748|ref|YP_004245940.1| - 0.0019 17.1 0.0 0.066 12.1 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.14 gi|325969748|ref|YP_004245940.1| - 0.023 13.4 0.0 0.034 12.9 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_9 PF13454.6 gi|325969748|ref|YP_004245940.1| - 0.032 14.2 0.0 0.078 13.0 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|325969748|ref|YP_004245940.1| - 0.048 13.9 0.0 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain ThiF PF00899.21 gi|325969748|ref|YP_004245940.1| - 0.048 13.0 0.1 0.13 11.6 0.1 1.6 2 0 0 2 2 2 0 ThiF family Ribosomal_L38e PF01781.18 gi|325969749|ref|YP_004245941.1| - 0.0068 16.5 0.2 0.0079 16.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family PX PF00787.24 gi|325969749|ref|YP_004245941.1| - 0.019 15.0 0.4 0.03 14.3 0.4 1.4 1 1 1 2 2 2 0 PX domain ArnB_C PF18677.1 gi|325969750|ref|YP_004245942.1| - 0.018 15.1 2.3 0.029 14.5 2.3 1.4 1 1 0 1 1 1 0 Archaellum regulatory network B, C-terminal domain TPR_16 PF13432.6 gi|325969750|ref|YP_004245942.1| - 0.045 14.4 0.3 0.14 12.8 0.0 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|325969750|ref|YP_004245942.1| - 0.076 13.9 0.1 0.15 13.0 0.0 1.6 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF2120 PF09893.9 gi|325969751|ref|YP_004245943.1| - 0.04 14.0 0.1 0.053 13.6 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) PPR PF01535.20 gi|325969751|ref|YP_004245943.1| - 0.22 11.9 0.9 18 5.9 0.0 2.6 2 0 0 2 2 2 0 PPR repeat Hydrolase_like PF13242.6 gi|325969752|ref|YP_004245944.1| - 2.4e-20 72.4 0.0 6.7e-20 70.9 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|325969752|ref|YP_004245944.1| - 5.5e-20 71.4 0.0 1e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|325969752|ref|YP_004245944.1| - 1.6e-07 31.6 0.0 0.00013 22.1 0.0 2.2 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|325969752|ref|YP_004245944.1| - 9.6e-07 29.3 0.0 1.4e-05 25.5 0.0 3.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|325969752|ref|YP_004245944.1| - 2.5e-05 24.0 0.0 5.8e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase DRTGG PF07085.12 gi|325969752|ref|YP_004245944.1| - 0.0013 18.4 0.2 0.0074 16.1 0.0 2.1 2 0 0 2 2 2 1 DRTGG domain RibD_C PF01872.17 gi|325969752|ref|YP_004245944.1| - 0.01 15.7 0.0 0.023 14.5 0.0 1.6 2 0 0 2 2 2 0 RibD C-terminal domain Sugar_tr PF00083.24 gi|325969753|ref|YP_004245945.1| - 2.7e-48 164.9 24.5 3.5e-48 164.6 24.5 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|325969753|ref|YP_004245945.1| - 4.3e-38 131.1 80.3 4.4e-33 114.7 42.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Polyketide_cyc PF03364.20 gi|325969754|ref|YP_004245946.1| - 9.7e-06 25.8 0.0 1.1e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|325969754|ref|YP_004245946.1| - 0.00012 22.3 0.0 0.00016 22.0 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport MFS_1 PF07690.16 gi|325969755|ref|YP_004245947.1| - 3.6e-32 111.6 56.1 1.1e-26 93.6 34.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|325969755|ref|YP_004245947.1| - 0.00048 19.1 14.8 0.026 13.4 14.8 2.4 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|325969755|ref|YP_004245947.1| - 0.00063 18.7 17.9 0.0032 16.4 4.2 2.2 1 1 0 2 2 2 2 Sugar (and other) transporter 4HBT PF03061.22 gi|325969756|ref|YP_004245948.1| - 1e-14 54.7 0.0 1.2e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|325969756|ref|YP_004245948.1| - 4.4e-14 53.0 0.1 4.9e-14 52.9 0.1 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|325969756|ref|YP_004245948.1| - 1.4e-05 24.5 0.1 1.5e-05 24.5 0.1 1.1 1 0 0 1 1 1 1 Acyl-ACP thioesterase 4HBT_3 PF13622.6 gi|325969756|ref|YP_004245948.1| - 0.029 14.6 0.0 0.032 14.5 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily UL97 PF06734.12 gi|325969756|ref|YP_004245948.1| - 0.096 12.6 0.0 0.13 12.1 0.0 1.3 1 1 0 1 1 1 0 UL97 Penicil_amidase PF01804.18 gi|325969757|ref|YP_004245949.1| - 2.6e-97 327.4 0.1 3.5e-97 327.0 0.1 1.0 1 0 0 1 1 1 1 Penicillin amidase AMP-binding PF00501.28 gi|325969758|ref|YP_004245950.1| - 7.9e-52 176.3 0.0 1e-51 175.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325969758|ref|YP_004245950.1| - 5.3e-15 56.2 0.0 1e-14 55.2 0.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HpaB_N PF11794.8 gi|325969759|ref|YP_004245951.1| - 2.9e-79 266.6 0.2 4.1e-79 266.1 0.2 1.1 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|325969759|ref|YP_004245951.1| - 5.7e-41 139.8 0.0 1e-40 139.0 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal AMP-binding PF00501.28 gi|325969760|ref|YP_004245952.1| - 1e-106 357.1 0.0 1.2e-106 356.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325969760|ref|YP_004245952.1| - 1.7e-19 70.5 0.3 3.1e-19 69.7 0.3 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4293 PF14126.6 gi|325969760|ref|YP_004245952.1| - 0.18 12.0 0.1 0.32 11.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) PTE PF02126.18 gi|325969761|ref|YP_004245953.1| - 9.8e-78 261.6 0.0 1.1e-77 261.4 0.0 1.0 1 0 0 1 1 1 1 Phosphotriesterase family Stevor PF17410.2 gi|325969761|ref|YP_004245953.1| - 0.25 10.9 0.3 1.4 8.4 0.1 1.9 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame Imm52 PF15579.6 gi|325969762|ref|YP_004245954.1| - 0.049 13.5 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 52 NurA PF09376.10 gi|325969763|ref|YP_004245955.1| - 0.0011 18.7 0.7 0.0092 15.7 0.7 2.0 1 1 0 1 1 1 1 NurA domain Ac81 PF05820.11 gi|325969763|ref|YP_004245955.1| - 0.16 11.5 0.1 1.4 8.4 0.0 2.0 2 0 0 2 2 2 0 Baculoviridae AC81 DUF1233 PF06806.12 gi|325969764|ref|YP_004245956.1| - 0.069 12.8 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Putative excisionase (DUF1233) adh_short PF00106.25 gi|325969765|ref|YP_004245957.1| - 9.4e-25 87.2 0.2 1.1e-24 87.0 0.2 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|325969765|ref|YP_004245957.1| - 7.5e-22 78.0 0.1 8.7e-22 77.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|325969765|ref|YP_004245957.1| - 7.7e-05 22.7 0.2 0.0001 22.3 0.2 1.1 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|325969765|ref|YP_004245957.1| - 0.00074 19.4 0.6 0.001 19.0 0.6 1.2 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|325969765|ref|YP_004245957.1| - 0.0046 16.5 0.1 0.0053 16.2 0.1 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|325969765|ref|YP_004245957.1| - 0.065 12.6 0.2 0.082 12.3 0.2 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|325969766|ref|YP_004245958.1| - 6.4e-39 133.9 0.2 7.1e-39 133.8 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|325969766|ref|YP_004245958.1| - 1.6e-23 83.2 0.5 2e-23 82.9 0.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase MFS_1 PF07690.16 gi|325969767|ref|YP_004245959.1| - 1.9e-15 56.7 49.1 3.3e-10 39.4 10.0 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF423 PF04241.15 gi|325969767|ref|YP_004245959.1| - 5 7.4 10.8 0.59 10.4 4.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF423) NUDIX PF00293.28 gi|325969769|ref|YP_004245961.1| - 3.4e-18 65.9 0.2 4.5e-18 65.6 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Sugar_tr PF00083.24 gi|325969770|ref|YP_004245962.1| - 1.7e-34 119.5 30.1 2.5e-24 86.0 8.6 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|325969770|ref|YP_004245962.1| - 4.8e-22 78.4 71.7 1.1e-20 73.9 44.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|325969770|ref|YP_004245962.1| - 0.0031 16.9 22.1 0.007 15.7 22.1 1.8 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB YrhC PF14143.6 gi|325969770|ref|YP_004245962.1| - 4.5 7.4 10.3 2.2 8.4 0.3 3.9 3 1 0 3 3 3 0 YrhC-like protein RTC PF01137.21 gi|325969771|ref|YP_004245963.1| - 5.1e-84 280.9 0.1 5.8e-84 280.7 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|325969771|ref|YP_004245963.1| - 2.9e-28 98.4 0.1 5e-28 97.6 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain HTH_50 PF18024.1 gi|325969772|ref|YP_004245964.1| - 0.0038 16.8 0.7 0.011 15.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Peptidase_M30 PF10460.9 gi|325969772|ref|YP_004245964.1| - 0.18 10.7 0.1 0.21 10.5 0.1 1.1 1 0 0 1 1 1 0 Peptidase M30 AhpC-TSA PF00578.21 gi|325969773|ref|YP_004245965.1| - 3.9e-40 136.6 0.0 4.5e-40 136.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|325969773|ref|YP_004245965.1| - 6.5e-27 94.0 0.0 7.1e-27 93.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|325969773|ref|YP_004245965.1| - 7.5e-07 29.1 0.0 1.1e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 SCO1/SenC GSHPx PF00255.19 gi|325969773|ref|YP_004245965.1| - 0.00026 20.5 0.0 0.00079 19.0 0.0 1.7 1 1 0 1 1 1 1 Glutathione peroxidase AhpC-TSA_2 PF13911.6 gi|325969773|ref|YP_004245965.1| - 0.00055 20.0 0.0 0.00069 19.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Lipocalin_2 PF08212.12 gi|325969773|ref|YP_004245965.1| - 0.058 13.3 0.0 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 Lipocalin-like domain DUF899 PF05988.12 gi|325969773|ref|YP_004245965.1| - 0.11 12.0 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) KORA PF16509.5 gi|325969773|ref|YP_004245965.1| - 0.12 12.7 0.0 0.19 12.0 0.0 1.4 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor Peptidase_A4 PF01828.17 gi|325969774|ref|YP_004245966.1| - 2.8e-33 115.2 7.0 3.1e-33 115.0 7.0 1.1 1 0 0 1 1 1 1 Peptidase A4 family CdiI_2 PF18593.1 gi|325969774|ref|YP_004245966.1| - 0.076 13.7 0.0 0.12 13.0 0.0 1.3 1 0 0 1 1 1 0 CdiI immunity protein DUF1921 PF09081.10 gi|325969775|ref|YP_004245967.1| - 5.4 7.3 6.7 26 5.1 0.2 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF1921) GIY-YIG PF01541.24 gi|325969776|ref|YP_004245968.1| - 0.16 12.3 0.0 0.4 11.0 0.0 1.9 2 2 0 2 2 2 0 GIY-YIG catalytic domain DUF2025 PF09634.10 gi|325969777|ref|YP_004245969.1| - 0.059 13.4 0.1 0.068 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2025) DAO PF01266.24 gi|325969779|ref|YP_004245971.1| - 1.6e-07 31.2 0.0 1.9e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase AA_permease_2 PF13520.6 gi|325969780|ref|YP_004245972.1| - 2.3e-32 112.4 58.8 2.3e-32 112.4 58.8 1.9 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|325969780|ref|YP_004245972.1| - 2.7e-27 95.5 37.9 2.7e-27 95.5 37.9 2.1 2 0 0 2 2 2 1 Amino acid permease HTH_ParB PF17762.1 gi|325969781|ref|YP_004245973.1| - 0.018 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain found in ParB protein Peroxin-13_N PF04088.13 gi|325969782|ref|YP_004245974.1| - 0.067 13.5 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 Peroxin 13, N-terminal region HTH_micro PF17007.5 gi|325969782|ref|YP_004245974.1| - 0.1 11.4 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 HTH-like DUF5418 PF17439.2 gi|325969783|ref|YP_004245975.1| - 1.8 8.6 12.1 2.4 8.2 12.1 1.3 1 1 0 1 1 1 0 Family of unknown function (DUF5418) ABC_tran PF00005.27 gi|325969784|ref|YP_004245976.1| - 1.6e-30 106.4 0.0 2.2e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|325969784|ref|YP_004245976.1| - 2.7e-15 57.0 2.9 6.5e-09 36.0 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|325969784|ref|YP_004245976.1| - 0.00029 21.0 0.0 0.00081 19.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|325969784|ref|YP_004245976.1| - 0.00042 20.1 0.0 0.32 10.6 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SRP54 PF00448.22 gi|325969784|ref|YP_004245976.1| - 0.00081 19.1 0.0 0.0016 18.1 0.0 1.5 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|325969784|ref|YP_004245976.1| - 0.002 18.5 0.2 0.0039 17.6 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|325969784|ref|YP_004245976.1| - 0.0033 17.7 0.0 0.006 16.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|325969784|ref|YP_004245976.1| - 0.0047 17.0 0.0 0.8 9.7 0.0 2.3 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|325969784|ref|YP_004245976.1| - 0.0056 16.1 0.1 0.28 10.6 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CbiA PF01656.23 gi|325969784|ref|YP_004245976.1| - 0.02 15.0 0.0 0.028 14.5 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|325969784|ref|YP_004245976.1| - 0.024 14.4 0.1 0.063 13.0 0.0 1.7 2 1 1 3 3 3 0 AAA domain AAA PF00004.29 gi|325969784|ref|YP_004245976.1| - 0.024 15.1 0.2 0.11 12.9 0.0 2.3 1 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|325969784|ref|YP_004245976.1| - 0.044 14.3 0.1 0.074 13.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|325969784|ref|YP_004245976.1| - 0.062 13.8 0.1 0.5 10.9 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|325969784|ref|YP_004245976.1| - 0.062 13.0 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|325969784|ref|YP_004245976.1| - 0.083 12.8 0.2 0.13 12.1 0.2 1.6 1 1 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|325969784|ref|YP_004245976.1| - 0.084 11.5 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|325969784|ref|YP_004245976.1| - 0.092 13.0 0.0 0.36 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|325969784|ref|YP_004245976.1| - 0.14 9.7 0.1 0.18 9.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rieske PF00355.26 gi|325969786|ref|YP_004245978.1| - 9.7e-19 67.1 0.0 1.8e-18 66.2 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.19 gi|325969786|ref|YP_004245978.1| - 0.14 12.1 0.0 0.43 10.5 0.0 1.7 1 1 0 1 1 1 0 Ring hydroxylating alpha subunit (catalytic domain) Asp_protease_2 PF13650.6 gi|325969787|ref|YP_004245979.1| - 4.6e-05 24.0 0.0 4.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|325969787|ref|YP_004245979.1| - 0.00081 19.9 0.0 0.00097 19.7 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|325969788|ref|YP_004245980.1| - 0.15 12.7 0.0 0.21 12.2 0.0 1.3 1 0 0 1 1 1 0 Aspartyl protease KH_7 PF17214.3 gi|325969789|ref|YP_004245981.1| - 6.1e-24 83.8 0.7 1.5e-23 82.5 0.7 1.7 1 0 0 1 1 1 1 KH domain Beta-Casp PF10996.8 gi|325969789|ref|YP_004245981.1| - 3.4e-22 78.8 0.0 1.6e-21 76.7 0.0 2.2 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.27 gi|325969789|ref|YP_004245981.1| - 2.6e-15 57.0 0.2 1.5e-14 54.5 0.1 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|325969789|ref|YP_004245981.1| - 1.1e-14 54.4 0.0 2.2e-14 53.4 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|325969789|ref|YP_004245981.1| - 1.1e-14 54.1 0.0 4.1e-14 52.3 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_2 PF12706.7 gi|325969789|ref|YP_004245981.1| - 1.1e-09 38.1 0.1 3.3e-09 36.6 0.1 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain YolD PF08863.10 gi|325969789|ref|YP_004245981.1| - 0.02 15.0 0.4 14 5.8 0.0 3.5 4 0 0 4 4 4 0 YolD-like protein Lactamase_B_3 PF13483.6 gi|325969789|ref|YP_004245981.1| - 0.023 14.6 0.0 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Glyco_hydro_15 PF00723.21 gi|325969790|ref|YP_004245982.1| - 3.3e-11 42.6 0.4 4.8e-08 32.2 0.1 3.0 1 1 1 3 3 3 3 Glycosyl hydrolases family 15 CcmH PF03918.14 gi|325969790|ref|YP_004245982.1| - 0.26 10.6 2.1 0.76 9.1 0.5 2.1 2 0 0 2 2 2 0 Cytochrome C biogenesis protein EamA PF00892.20 gi|325969791|ref|YP_004245983.1| - 2.9e-15 56.7 48.3 2.5e-10 40.7 15.8 2.5 3 0 0 3 3 3 2 EamA-like transporter family Sugar_transport PF06800.12 gi|325969791|ref|YP_004245983.1| - 0.002 17.5 21.9 0.011 15.0 20.5 2.5 1 1 0 1 1 1 1 Sugar transport protein TMEM234 PF10639.9 gi|325969791|ref|YP_004245983.1| - 6.4 6.8 13.3 0.59 10.2 1.1 3.2 2 1 1 3 3 3 0 Putative transmembrane family 234 Gpr1_Fun34_YaaH PF01184.19 gi|325969792|ref|YP_004245984.1| - 0.0058 16.3 20.9 0.021 14.4 20.9 1.7 1 1 0 1 1 1 1 GPR1/FUN34/yaaH family AMP-binding PF00501.28 gi|325969793|ref|YP_004245985.1| - 7.2e-77 258.8 0.0 8.3e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|325969793|ref|YP_004245985.1| - 2.1e-20 73.5 0.0 5e-20 72.3 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ATPase PF06745.13 gi|325969794|ref|YP_004245986.1| - 4.7e-30 104.7 0.3 1.7e-28 99.6 0.3 2.5 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|325969794|ref|YP_004245986.1| - 1.2e-06 28.3 0.7 3.8e-05 23.4 0.4 3.0 2 1 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|325969794|ref|YP_004245986.1| - 0.00021 20.7 0.0 0.0007 19.0 0.0 2.1 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|325969794|ref|YP_004245986.1| - 0.0011 17.7 0.0 0.0017 17.0 0.0 1.4 1 0 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|325969794|ref|YP_004245986.1| - 0.0013 18.5 0.1 0.027 14.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|325969794|ref|YP_004245986.1| - 0.0038 17.6 0.0 0.006 17.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RecA PF00154.21 gi|325969794|ref|YP_004245986.1| - 0.005 16.3 0.2 0.4 10.1 0.0 2.3 2 1 0 2 2 2 1 recA bacterial DNA recombination protein MMR_HSR1 PF01926.23 gi|325969794|ref|YP_004245986.1| - 0.018 15.2 0.1 0.05 13.7 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Rad51 PF08423.11 gi|325969794|ref|YP_004245986.1| - 0.021 14.1 0.0 0.25 10.5 0.0 2.5 2 1 1 3 3 3 0 Rad51 Elong_Iki1 PF10483.9 gi|325969794|ref|YP_004245986.1| - 0.031 13.8 0.2 0.64 9.5 0.2 2.2 1 1 0 1 1 1 0 Elongator subunit Iki1 AAA_22 PF13401.6 gi|325969794|ref|YP_004245986.1| - 0.032 14.5 0.3 0.34 11.2 0.3 2.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|325969794|ref|YP_004245986.1| - 0.044 14.2 0.0 1.8 9.0 0.0 2.9 2 1 1 3 3 3 0 RNA helicase DUF2075 PF09848.9 gi|325969794|ref|YP_004245986.1| - 0.058 12.6 0.0 0.093 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.9 gi|325969794|ref|YP_004245986.1| - 0.091 11.9 0.1 0.13 11.4 0.1 1.5 1 1 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 rRNA_processing PF08524.11 gi|325969794|ref|YP_004245986.1| - 0.1 12.6 0.6 0.1 12.6 0.6 1.5 2 0 0 2 2 2 0 rRNA processing AAA_14 PF13173.6 gi|325969794|ref|YP_004245986.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain OB_aCoA_assoc PF01796.17 gi|325969796|ref|YP_004245988.1| - 9.2e-11 41.6 0.1 1.5e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|325969796|ref|YP_004245988.1| - 2.3e-09 36.9 3.6 3.6e-09 36.3 3.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|325969797|ref|YP_004245989.1| - 1.3e-10 41.1 0.1 6e-10 38.9 0.1 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|325969797|ref|YP_004245989.1| - 1.8e-05 24.4 0.1 0.00014 21.5 0.0 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ploopntkinase1 PF18748.1 gi|325969797|ref|YP_004245989.1| - 0.026 14.0 0.1 0.044 13.3 0.1 1.3 1 0 0 1 1 1 0 P-loop Nucleotide Kinase1 ACP_syn_III PF08545.10 gi|325969797|ref|YP_004245989.1| - 0.087 12.7 0.8 0.42 10.5 0.1 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG-CoA_red PF00368.18 gi|325969798|ref|YP_004245990.1| - 1.7e-127 425.4 2.3 2e-127 425.2 2.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Fic PF02661.18 gi|325969798|ref|YP_004245990.1| - 0.15 13.0 0.0 0.37 11.7 0.0 1.7 1 0 0 1 1 1 0 Fic/DOC family Isochorismatase PF00857.20 gi|325969799|ref|YP_004245991.1| - 4.9e-41 140.8 0.0 5.8e-41 140.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DEAD PF00270.29 gi|325969801|ref|YP_004245993.1| - 2.4e-24 86.0 0.0 4.5e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|325969801|ref|YP_004245993.1| - 7.5e-18 64.9 0.0 1.2e-14 54.6 0.0 2.6 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|325969801|ref|YP_004245993.1| - 2.1e-13 50.8 0.1 1.8e-12 47.8 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|325969801|ref|YP_004245993.1| - 0.00031 20.8 0.0 0.00052 20.1 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Flavi_DEAD PF07652.14 gi|325969801|ref|YP_004245993.1| - 0.033 14.2 0.3 0.81 9.7 0.0 2.9 4 0 0 4 4 4 0 Flavivirus DEAD domain Zn-ribbon_8 PF09723.10 gi|325969802|ref|YP_004245994.1| - 0.01 16.0 0.9 0.019 15.1 0.9 1.4 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|325969802|ref|YP_004245994.1| - 0.075 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1451 PF07295.11 gi|325969802|ref|YP_004245994.1| - 0.11 12.5 0.3 0.21 11.6 0.1 1.5 2 0 0 2 2 2 0 Zinc-ribbon containing domain TackOD1 PF18551.1 gi|325969802|ref|YP_004245994.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 PGM_PMM_I PF02878.16 gi|325969803|ref|YP_004245995.1| - 7.9e-34 116.3 0.0 1.5e-33 115.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|325969803|ref|YP_004245995.1| - 2.5e-25 89.1 0.1 8.6e-25 87.3 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|325969803|ref|YP_004245995.1| - 2.5e-19 69.6 0.1 9.8e-19 67.6 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|325969803|ref|YP_004245995.1| - 1.8e-12 47.2 0.0 4.1e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PNP_UDP_1 PF01048.20 gi|325969804|ref|YP_004245996.1| - 2.1e-38 131.9 0.9 2.6e-38 131.6 0.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Transp_cyt_pur PF02133.15 gi|325969805|ref|YP_004245997.1| - 5.6e-08 32.0 38.0 1e-07 31.1 38.0 1.4 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin SANT_DAMP1_like PF16282.5 gi|325969805|ref|YP_004245997.1| - 0.047 13.9 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 SANT/Myb-like domain of DAMP1 DUF3040 PF11239.8 gi|325969805|ref|YP_004245997.1| - 6 7.2 5.4 8.5 6.7 0.5 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3040) MFS_1 PF07690.16 gi|325969806|ref|YP_004245998.1| - 9.5e-40 136.6 67.2 9.5e-40 136.6 67.2 3.9 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|325969806|ref|YP_004245998.1| - 0.001 17.6 5.3 0.001 17.6 5.3 2.4 2 1 0 2 2 2 2 Transmembrane secretion effector NDUF_B12 PF08122.12 gi|325969806|ref|YP_004245998.1| - 7.6 6.7 6.4 7.1 6.8 0.1 3.5 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase B12 subunit family PCMT PF01135.19 gi|325969807|ref|YP_004245999.1| - 6e-66 222.2 0.0 6.9e-66 222.0 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|325969807|ref|YP_004245999.1| - 2.7e-06 27.2 0.0 3.7e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|325969807|ref|YP_004245999.1| - 2.8e-06 27.2 0.0 4.4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|325969807|ref|YP_004245999.1| - 0.00016 22.3 0.0 0.00027 21.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|325969807|ref|YP_004245999.1| - 0.00021 22.3 0.0 0.00032 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|325969807|ref|YP_004245999.1| - 0.001 18.3 0.0 0.0018 17.5 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase CMAS PF02353.20 gi|325969807|ref|YP_004245999.1| - 0.0072 15.7 0.0 0.0087 15.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|325969807|ref|YP_004245999.1| - 0.012 15.2 0.0 0.02 14.6 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Fibrillarin PF01269.17 gi|325969807|ref|YP_004245999.1| - 0.021 13.9 0.0 0.044 12.9 0.0 1.5 1 0 0 1 1 1 0 Fibrillarin DUF938 PF06080.12 gi|325969807|ref|YP_004245999.1| - 0.021 14.6 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_11 PF08241.12 gi|325969807|ref|YP_004245999.1| - 0.067 13.9 0.0 0.12 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|325969807|ref|YP_004245999.1| - 0.069 13.0 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DUF779 PF05610.11 gi|325969808|ref|YP_004246000.1| - 4.4e-21 74.9 0.0 5.6e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF779) Aldedh PF00171.22 gi|325969810|ref|YP_004246002.1| - 7.1e-164 545.7 0.1 8.5e-164 545.4 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF1487 PF07368.11 gi|325969810|ref|YP_004246002.1| - 0.11 11.9 0.0 3.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1487) CC2D2AN-C2 PF15625.6 gi|325969810|ref|YP_004246002.1| - 0.17 11.6 0.0 0.34 10.7 0.0 1.4 1 0 0 1 1 1 0 CC2D2A N-terminal C2 domain Peripla_BP_2 PF01497.18 gi|325969813|ref|YP_004246005.1| - 7.4e-13 48.6 0.0 1.3e-12 47.8 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein MFS_1 PF07690.16 gi|325969814|ref|YP_004246006.1| - 7.2e-21 74.5 45.5 7.2e-21 74.5 45.5 1.6 1 1 0 1 1 1 1 Major Facilitator Superfamily DUF2250 PF10007.9 gi|325969815|ref|YP_004246007.1| - 0.0004 20.4 0.0 0.0014 18.7 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Sun2_CC2 PF18580.1 gi|325969815|ref|YP_004246007.1| - 0.011 16.0 0.0 0.03 14.5 0.0 1.7 2 0 0 2 2 2 0 SUN2 coiled coil domain 2 DUF4423 PF14394.6 gi|325969815|ref|YP_004246007.1| - 0.064 13.0 0.0 0.091 12.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MR_MLE_C PF13378.6 gi|325969816|ref|YP_004246008.1| - 5.7e-62 209.2 0.1 7.9e-62 208.7 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|325969816|ref|YP_004246008.1| - 3.7e-16 59.4 0.0 6.4e-16 58.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AP_endonuc_2 PF01261.24 gi|325969816|ref|YP_004246008.1| - 0.0031 17.0 0.0 0.049 13.1 0.0 2.1 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel MFS_1 PF07690.16 gi|325969817|ref|YP_004246009.1| - 6.4e-44 150.3 58.1 8e-35 120.4 20.2 2.6 3 0 0 3 3 3 2 Major Facilitator Superfamily SUR7 PF06687.12 gi|325969818|ref|YP_004246010.1| - 0.057 13.0 7.0 0.066 12.8 7.0 1.0 1 0 0 1 1 1 0 SUR7/PalI family DUF326 PF03860.16 gi|325969818|ref|YP_004246010.1| - 0.073 13.1 4.4 0.1 12.6 4.4 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF326) DUF5518 PF17647.1 gi|325969818|ref|YP_004246010.1| - 0.14 12.3 7.8 0.17 12.0 7.8 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5518) SPATA9 PF15824.5 gi|325969818|ref|YP_004246010.1| - 0.19 11.0 2.4 0.19 11.0 2.4 1.1 1 0 0 1 1 1 0 Spermatogenesis-associated protein 9 AcrZ PF10766.9 gi|325969818|ref|YP_004246010.1| - 3.2 7.4 8.2 2.9 7.5 0.9 2.4 2 0 0 2 2 2 0 Multidrug efflux pump-associated protein AcrZ AAA_16 PF13191.6 gi|325969819|ref|YP_004246011.1| - 0.0014 19.0 0.0 0.0022 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.27 gi|325969819|ref|YP_004246011.1| - 0.0025 18.3 0.0 0.0052 17.3 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_24 PF13479.6 gi|325969819|ref|YP_004246011.1| - 0.0033 17.2 0.0 0.17 11.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|325969819|ref|YP_004246011.1| - 0.0064 15.7 0.0 0.014 14.6 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_30 PF13604.6 gi|325969819|ref|YP_004246011.1| - 0.0077 16.0 0.1 0.014 15.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|325969819|ref|YP_004246011.1| - 0.012 15.9 0.4 0.044 14.1 0.3 2.2 2 1 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|325969819|ref|YP_004246011.1| - 0.021 14.3 0.0 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein PhoH PF02562.16 gi|325969819|ref|YP_004246011.1| - 0.029 13.8 0.0 0.075 12.5 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.12 gi|325969819|ref|YP_004246011.1| - 0.059 13.3 0.9 0.13 12.1 0.9 2.0 1 1 0 1 1 1 0 NACHT domain AAA_21 PF13304.6 gi|325969819|ref|YP_004246011.1| - 0.12 12.1 0.0 0.28 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_25 PF13481.6 gi|325969819|ref|YP_004246011.1| - 0.16 11.5 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|325969819|ref|YP_004246011.1| - 0.18 11.6 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|325969819|ref|YP_004246011.1| - 0.24 11.1 1.3 2.4 7.9 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Abhydrolase_1 PF00561.20 gi|325969821|ref|YP_004246013.1| - 1.1e-14 54.8 0.0 4.3e-10 39.7 0.1 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|325969821|ref|YP_004246013.1| - 1.9e-10 41.7 0.0 3.4e-05 24.6 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|325969821|ref|YP_004246013.1| - 1.9e-05 24.0 0.0 0.0094 15.2 0.0 2.2 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|325969821|ref|YP_004246013.1| - 0.023 14.5 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family UPF0227 PF05728.12 gi|325969821|ref|YP_004246013.1| - 0.028 14.3 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) DLH PF01738.18 gi|325969821|ref|YP_004246013.1| - 0.075 12.6 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family RNA_POL_M_15KD PF02150.16 gi|325969822|ref|YP_004246014.1| - 0.0021 17.9 0.2 0.0021 17.9 0.2 1.9 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit rRNA_methylase PF06962.12 gi|325969822|ref|YP_004246014.1| - 0.048 13.6 0.2 0.059 13.3 0.2 1.1 1 0 0 1 1 1 0 Putative rRNA methylase DNA_methylase PF00145.17 gi|325969823|ref|YP_004246015.1| - 1.9e-49 168.8 0.0 4.9e-34 118.2 0.0 2.1 2 0 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|325969823|ref|YP_004246015.1| - 0.012 15.2 0.0 0.031 13.8 0.1 1.6 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase FBPase_3 PF01950.16 gi|325969824|ref|YP_004246016.1| - 1.9e-174 580.0 0.0 2.3e-174 579.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Peptidase_M19 PF01244.21 gi|325969825|ref|YP_004246017.1| - 2.9e-79 266.6 0.0 3.2e-79 266.4 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) tRNA-synt_1b PF00579.25 gi|325969826|ref|YP_004246018.1| - 1.3e-25 90.3 0.0 1.1e-24 87.3 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) PUA PF01472.20 gi|325969827|ref|YP_004246019.1| - 2.2e-16 59.5 1.1 3.2e-16 59.1 1.1 1.2 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|325969827|ref|YP_004246019.1| - 1.1e-11 44.6 0.0 2.2e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase UPF0113 PF03657.13 gi|325969827|ref|YP_004246019.1| - 0.00026 21.2 0.4 0.00078 19.7 0.1 1.9 2 0 0 2 2 2 1 UPF0113 PUA domain TruB-C_2 PF09157.11 gi|325969827|ref|YP_004246019.1| - 0.0004 20.4 0.7 0.0021 18.1 0.2 2.2 2 1 1 3 3 3 1 Pseudouridine synthase II TruB, C-terminal PUA_3 PF17785.1 gi|325969827|ref|YP_004246019.1| - 0.091 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 PUA-like domain UDG PF03167.19 gi|325969828|ref|YP_004246020.1| - 8.6e-33 113.5 0.0 1.1e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Acyl-CoA_dh_1 PF00441.24 gi|325969829|ref|YP_004246021.1| - 7.9e-40 136.5 2.2 1.2e-39 136.0 2.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|325969829|ref|YP_004246021.1| - 4.1e-22 78.2 0.0 6.7e-22 77.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|325969829|ref|YP_004246021.1| - 4.5e-22 78.8 0.0 8.5e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|325969829|ref|YP_004246021.1| - 6.4e-16 58.8 0.2 1.1e-15 58.1 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|325969829|ref|YP_004246021.1| - 0.15 11.7 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Acyl-CoA_dh_1 PF00441.24 gi|325969830|ref|YP_004246022.1| - 7.9e-47 159.2 0.1 1.2e-46 158.7 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|325969830|ref|YP_004246022.1| - 5.1e-28 98.0 0.0 1.2e-27 96.8 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|325969830|ref|YP_004246022.1| - 2.6e-23 82.0 0.0 4.7e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|325969830|ref|YP_004246022.1| - 1e-17 64.7 0.0 1.6e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain YqzM PF14141.6 gi|325969831|ref|YP_004246023.1| - 9 6.4 10.2 5.7 7.1 7.2 2.2 2 0 0 2 2 2 0 YqzM-like protein DUF58 PF01882.18 gi|325969832|ref|YP_004246024.1| - 0.00036 20.7 0.0 0.00088 19.5 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF2007 PF09413.10 gi|325969832|ref|YP_004246024.1| - 0.064 13.4 0.1 0.26 11.5 0.1 2.0 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein AAA_3 PF07726.11 gi|325969833|ref|YP_004246025.1| - 5.4e-64 213.9 0.0 7.7e-64 213.4 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|325969833|ref|YP_004246025.1| - 4e-20 71.4 0.9 7.2e-20 70.6 0.2 1.7 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|325969833|ref|YP_004246025.1| - 2.5e-14 53.4 0.0 4.2e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|325969833|ref|YP_004246025.1| - 3.5e-05 23.0 0.0 0.00026 20.2 0.0 2.2 1 1 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|325969833|ref|YP_004246025.1| - 4.5e-05 23.9 0.0 0.00015 22.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|325969833|ref|YP_004246025.1| - 0.0004 20.2 0.0 0.0039 16.9 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|325969833|ref|YP_004246025.1| - 0.0013 18.5 0.0 0.0026 17.5 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|325969833|ref|YP_004246025.1| - 0.0022 17.4 0.2 1.7 7.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|325969833|ref|YP_004246025.1| - 0.009 16.4 0.0 0.019 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_lid_8 PF17868.1 gi|325969833|ref|YP_004246025.1| - 0.018 14.9 0.2 0.041 13.8 0.1 1.6 1 1 0 1 1 1 0 AAA lid domain Transglut_core PF01841.19 gi|325969834|ref|YP_004246026.1| - 4.1e-08 33.7 0.0 6.2e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|325969835|ref|YP_004246027.1| - 0.0054 17.0 0.0 0.0085 16.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) RNase_HII PF01351.18 gi|325969836|ref|YP_004246028.1| - 7.9e-39 133.6 0.0 8.9e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Herpes_LMP2 PF07415.11 gi|325969837|ref|YP_004246029.1| - 0.0014 17.5 0.4 0.0015 17.4 0.4 1.0 1 0 0 1 1 1 1 Gammaherpesvirus latent membrane protein (LMP2) protein Mntp PF02659.15 gi|325969837|ref|YP_004246029.1| - 0.0015 18.3 0.8 0.0016 18.2 0.8 1.0 1 0 0 1 1 1 1 Putative manganese efflux pump PMP22_Claudin PF00822.20 gi|325969837|ref|YP_004246029.1| - 0.17 11.8 2.5 0.18 11.7 2.5 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin family DUF872 PF05915.12 gi|325969837|ref|YP_004246029.1| - 0.25 11.5 7.1 0.31 11.2 7.1 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) PGPGW PF09656.10 gi|325969837|ref|YP_004246029.1| - 0.83 9.2 9.5 4.4 6.9 0.2 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF973 PF06157.11 gi|325969837|ref|YP_004246029.1| - 1.1 8.3 11.9 1.2 8.1 11.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF3098 PF11297.8 gi|325969837|ref|YP_004246029.1| - 3.4 7.3 13.5 2.9 7.5 5.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) DUF2370 PF10176.9 gi|325969837|ref|YP_004246029.1| - 6.6 6.3 9.6 5.5 6.6 7.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2370) CDP-OH_P_transf PF01066.21 gi|325969837|ref|YP_004246029.1| - 9.1 7.1 8.1 12 6.7 8.1 1.2 1 0 0 1 1 1 0 CDP-alcohol phosphatidyltransferase CbiA PF01656.23 gi|325969838|ref|YP_004246030.1| - 1e-08 35.3 0.0 1.5e-08 34.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|325969838|ref|YP_004246030.1| - 1.5e-08 34.8 2.9 5e-08 33.1 2.9 1.8 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|325969838|ref|YP_004246030.1| - 1.2e-06 28.1 4.0 1.3e-05 24.8 4.0 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|325969838|ref|YP_004246030.1| - 0.026 13.8 0.1 0.054 12.8 0.1 1.6 1 0 0 1 1 1 0 ATPase MipZ ArsA_ATPase PF02374.15 gi|325969838|ref|YP_004246030.1| - 0.09 11.9 1.2 0.12 11.5 0.3 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|325969838|ref|YP_004246030.1| - 0.091 12.3 0.4 0.21 11.1 0.4 1.8 1 1 0 1 1 1 0 AAA domain Chorismate_bind PF00425.18 gi|325969838|ref|YP_004246030.1| - 0.23 11.0 0.0 0.35 10.4 0.0 1.2 1 0 0 1 1 1 0 chorismate binding enzyme CBP_BcsQ PF06564.12 gi|325969838|ref|YP_004246030.1| - 0.44 10.0 1.2 1.4 8.4 0.4 2.1 2 1 0 2 2 2 0 Cellulose biosynthesis protein BcsQ T2SSF PF00482.23 gi|325969839|ref|YP_004246031.1| - 9.7e-16 57.9 1.8 5.8e-10 39.2 0.1 3.6 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF677 PF05055.12 gi|325969839|ref|YP_004246031.1| - 0.039 12.9 2.1 0.042 12.7 0.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF677) DUF4231 PF14015.6 gi|325969839|ref|YP_004246031.1| - 0.97 9.9 0.0 0.97 9.9 0.0 5.3 4 3 1 5 5 5 0 Protein of unknown function (DUF4231) Fer4_8 PF13183.6 gi|325969841|ref|YP_004246033.1| - 7.7e-09 35.9 3.5 1.2e-08 35.2 3.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|325969841|ref|YP_004246033.1| - 2.1e-08 34.5 4.8 3.5e-08 33.9 4.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|325969841|ref|YP_004246033.1| - 6.8e-07 29.4 7.8 9.1e-06 25.7 9.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325969841|ref|YP_004246033.1| - 1.1e-05 25.5 8.0 2.5e-05 24.3 8.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|325969841|ref|YP_004246033.1| - 0.00014 22.4 10.7 0.002 18.7 12.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|325969841|ref|YP_004246033.1| - 0.0005 19.8 12.6 0.025 14.4 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|325969841|ref|YP_004246033.1| - 0.013 15.6 3.8 1.1 9.5 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325969841|ref|YP_004246033.1| - 0.032 14.8 11.0 0.17 12.5 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325969841|ref|YP_004246033.1| - 0.032 14.3 12.2 0.077 13.1 1.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|325969841|ref|YP_004246033.1| - 0.042 14.7 3.6 2.9 8.8 0.3 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|325969841|ref|YP_004246033.1| - 0.068 14.1 13.9 0.99 10.4 3.2 2.2 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|325969841|ref|YP_004246033.1| - 0.11 12.6 12.1 0.12 12.5 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|325969841|ref|YP_004246033.1| - 0.19 11.9 1.0 8.9 6.5 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|325969841|ref|YP_004246033.1| - 0.57 10.0 3.9 5.6 6.8 0.1 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|325969841|ref|YP_004246033.1| - 9.2 7.5 16.7 0.4 11.7 3.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_9 PF08221.11 gi|325969842|ref|YP_004246034.1| - 5.2e-07 29.7 0.0 8.7e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.20 gi|325969842|ref|YP_004246034.1| - 1.9e-06 27.6 0.0 5.6e-06 26.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|325969842|ref|YP_004246034.1| - 4.6e-05 22.9 0.0 8.4e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|325969842|ref|YP_004246034.1| - 0.00019 21.3 0.0 0.00047 20.0 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|325969842|ref|YP_004246034.1| - 0.0006 19.6 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|325969842|ref|YP_004246034.1| - 0.0052 16.7 0.0 0.014 15.3 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|325969842|ref|YP_004246034.1| - 0.0063 16.3 0.0 0.012 15.4 0.0 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|325969842|ref|YP_004246034.1| - 0.0077 16.7 0.0 0.013 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.11 gi|325969842|ref|YP_004246034.1| - 0.038 14.0 0.0 5.6 7.1 0.0 2.2 1 1 1 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain Rrf2 PF02082.20 gi|325969842|ref|YP_004246034.1| - 0.045 14.1 0.0 0.071 13.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|325969842|ref|YP_004246034.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.6 1 1 1 2 2 2 0 TFIIE alpha subunit DUF2582 PF10771.9 gi|325969842|ref|YP_004246034.1| - 0.17 12.1 0.0 2.9 8.1 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix domain (DUF2582) Pyr_redox_2 PF07992.14 gi|325969843|ref|YP_004246035.1| - 2.2e-14 53.4 4.0 1.5e-06 27.6 0.6 3.7 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_6 PF12837.7 gi|325969843|ref|YP_004246035.1| - 2.3e-14 52.7 15.1 1.3e-05 25.0 2.6 3.7 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4 PF00037.27 gi|325969843|ref|YP_004246035.1| - 5.3e-13 48.2 18.2 3.8e-06 26.5 3.9 3.9 4 0 0 4 4 3 3 4Fe-4S binding domain FAD_oxidored PF12831.7 gi|325969843|ref|YP_004246035.1| - 4.3e-10 39.5 0.1 6.5e-10 38.9 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer4_7 PF12838.7 gi|325969843|ref|YP_004246035.1| - 1.2e-09 38.6 13.9 1.9e-08 34.7 6.0 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|325969843|ref|YP_004246035.1| - 2.8e-09 36.5 13.5 0.0007 19.5 2.6 3.7 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325969843|ref|YP_004246035.1| - 7.2e-08 32.5 8.9 1.6e-06 28.2 4.7 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain DAO PF01266.24 gi|325969843|ref|YP_004246035.1| - 1e-07 31.9 0.3 2.8e-07 30.5 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|325969843|ref|YP_004246035.1| - 1.2e-07 31.2 0.5 1.2e-07 31.2 0.5 1.6 2 0 0 2 2 2 1 FAD binding domain Fer4_21 PF14697.6 gi|325969843|ref|YP_004246035.1| - 1.4e-07 31.5 3.6 1.4e-07 31.5 3.6 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|325969843|ref|YP_004246035.1| - 1.6e-07 31.4 12.1 2.1e-06 27.8 6.8 3.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain HI0933_like PF03486.14 gi|325969843|ref|YP_004246035.1| - 3.7e-06 25.9 0.3 0.01 14.6 0.1 2.2 1 1 1 2 2 2 2 HI0933-like protein Fer4_15 PF13459.6 gi|325969843|ref|YP_004246035.1| - 3.7e-06 27.6 11.9 0.2 12.4 0.1 4.8 4 0 0 4 4 4 2 4Fe-4S single cluster domain NAD_binding_8 PF13450.6 gi|325969843|ref|YP_004246035.1| - 6.1e-06 26.4 0.2 2.7e-05 24.3 0.1 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|325969843|ref|YP_004246035.1| - 1.1e-05 25.9 4.9 0.0019 18.7 2.4 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fer4_16 PF13484.6 gi|325969843|ref|YP_004246035.1| - 8.2e-05 23.5 11.4 0.0027 18.6 0.4 3.8 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|325969843|ref|YP_004246035.1| - 0.00012 22.6 8.6 0.3 11.7 1.3 3.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Pyr_redox_3 PF13738.6 gi|325969843|ref|YP_004246035.1| - 0.00058 19.2 0.1 0.008 15.5 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|325969843|ref|YP_004246035.1| - 0.00099 18.3 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|325969843|ref|YP_004246035.1| - 0.0012 18.1 0.2 0.0027 17.0 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|325969843|ref|YP_004246035.1| - 0.0017 17.5 0.0 0.0029 16.7 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|325969843|ref|YP_004246035.1| - 0.0044 17.4 1.0 0.1 13.1 0.1 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding Fer4_8 PF13183.6 gi|325969843|ref|YP_004246035.1| - 0.0056 17.1 10.4 0.15 12.6 7.5 3.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325969843|ref|YP_004246035.1| - 0.006 17.0 1.7 0.006 17.0 1.7 3.9 3 0 0 3 3 3 2 4Fe-4S binding domain Thi4 PF01946.17 gi|325969843|ref|YP_004246035.1| - 0.0077 15.5 0.0 0.019 14.2 0.0 1.6 1 0 0 1 1 1 1 Thi4 family Fer4_22 PF17179.4 gi|325969843|ref|YP_004246035.1| - 0.0085 16.9 4.2 1.2 10.0 0.9 3.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325969843|ref|YP_004246035.1| - 0.023 15.6 8.4 0.023 15.6 8.4 4.9 6 0 0 6 6 4 0 4Fe-4S binding domain Amino_oxidase PF01593.24 gi|325969843|ref|YP_004246035.1| - 0.52 9.5 3.4 0.36 10.1 0.2 2.3 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Fer4_13 PF13370.6 gi|325969843|ref|YP_004246035.1| - 2.5 8.7 15.0 3.2 8.4 1.9 3.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Pyr_redox_2 PF07992.14 gi|325969844|ref|YP_004246036.1| - 2.1e-26 92.9 0.0 5.9e-26 91.4 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|325969844|ref|YP_004246036.1| - 1.7e-12 46.6 23.7 3.4e-07 29.8 3.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|325969844|ref|YP_004246036.1| - 2.6e-09 37.5 22.4 4.5e-08 33.5 10.9 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|325969844|ref|YP_004246036.1| - 2.9e-09 36.5 0.3 5.2e-08 32.4 0.1 2.5 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.24 gi|325969844|ref|YP_004246036.1| - 3e-09 36.9 0.2 3.4e-05 23.6 0.1 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|325969844|ref|YP_004246036.1| - 5.1e-09 36.0 0.1 1.5e-08 34.4 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Fer4_10 PF13237.6 gi|325969844|ref|YP_004246036.1| - 1.1e-08 35.1 20.2 6.5e-07 29.4 10.8 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|325969844|ref|YP_004246036.1| - 1.5e-08 34.4 22.2 2.9e-05 23.9 1.8 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|325969844|ref|YP_004246036.1| - 9e-08 32.2 8.9 9e-08 32.2 8.9 2.8 2 1 1 3 3 2 2 4Fe-4S dicluster domain GIDA PF01134.22 gi|325969844|ref|YP_004246036.1| - 9.8e-08 31.5 0.5 3.9e-07 29.5 0.3 2.1 2 1 0 2 2 2 1 Glucose inhibited division protein A Fer4_16 PF13484.6 gi|325969844|ref|YP_004246036.1| - 1.5e-06 29.0 12.9 0.0015 19.4 0.3 3.1 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Pyr_redox PF00070.27 gi|325969844|ref|YP_004246036.1| - 1.7e-06 28.5 1.1 6.3e-05 23.5 0.5 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|325969844|ref|YP_004246036.1| - 2.5e-06 27.0 0.1 0.0068 15.7 0.0 3.2 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Fer4_8 PF13183.6 gi|325969844|ref|YP_004246036.1| - 3.8e-06 27.3 6.7 3.8e-06 27.3 6.7 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain NAD_binding_8 PF13450.6 gi|325969844|ref|YP_004246036.1| - 5.3e-06 26.6 0.0 1.3e-05 25.4 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|325969844|ref|YP_004246036.1| - 5.4e-06 25.4 0.5 1.2e-05 24.2 0.5 1.6 1 1 1 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|325969844|ref|YP_004246036.1| - 7.1e-06 25.4 0.1 1.2e-05 24.7 0.1 1.3 1 0 0 1 1 1 1 Thi4 family Fer4_17 PF13534.6 gi|325969844|ref|YP_004246036.1| - 1.9e-05 25.1 9.5 1.9e-05 25.1 9.5 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|325969844|ref|YP_004246036.1| - 3.4e-05 24.0 15.5 0.0064 16.9 1.7 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|325969844|ref|YP_004246036.1| - 4.3e-05 23.3 3.0 4.3e-05 23.3 3.0 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Lycopene_cycl PF05834.12 gi|325969844|ref|YP_004246036.1| - 6.8e-05 22.1 0.1 0.013 14.6 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|325969844|ref|YP_004246036.1| - 0.00065 19.0 0.2 0.00092 18.5 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Fer4_21 PF14697.6 gi|325969844|ref|YP_004246036.1| - 0.00097 19.2 26.2 0.013 15.6 2.3 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain AlaDh_PNT_C PF01262.21 gi|325969844|ref|YP_004246036.1| - 0.0029 16.9 0.1 0.0061 15.9 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Fer4_15 PF13459.6 gi|325969844|ref|YP_004246036.1| - 0.0035 18.0 11.5 0.21 12.4 1.1 3.4 3 0 0 3 3 3 2 4Fe-4S single cluster domain Amino_oxidase PF01593.24 gi|325969844|ref|YP_004246036.1| - 0.0085 15.4 1.8 0.12 11.6 0.0 2.7 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Fer4_13 PF13370.6 gi|325969844|ref|YP_004246036.1| - 0.017 15.6 0.3 0.017 15.6 0.3 3.0 4 0 0 4 4 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|325969844|ref|YP_004246036.1| - 0.028 15.2 13.5 0.064 14.1 0.4 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|325969844|ref|YP_004246036.1| - 0.029 15.3 28.7 0.12 13.4 6.9 3.6 3 0 0 3 3 3 0 4Fe-4S binding domain Trp_halogenase PF04820.14 gi|325969844|ref|YP_004246036.1| - 0.032 13.1 1.6 0.77 8.5 0.3 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|325969844|ref|YP_004246036.1| - 0.036 14.0 0.3 3.1 7.8 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding GBP_PSP PF02425.15 gi|325969844|ref|YP_004246036.1| - 0.088 12.5 0.1 0.088 12.5 0.1 2.0 2 0 0 2 2 1 0 Paralytic/GBP/PSP peptide FlpD PF02662.16 gi|325969845|ref|YP_004246037.1| - 5.2e-25 87.8 0.0 5.8e-25 87.7 0.0 1.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit TusA PF01206.17 gi|325969846|ref|YP_004246038.1| - 8.7e-23 79.9 0.0 1.1e-22 79.6 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.6 gi|325969847|ref|YP_004246039.1| - 3.9e-13 49.6 0.1 3.1e-06 27.2 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|325969847|ref|YP_004246039.1| - 1.3e-07 32.0 0.0 4.5e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF4388 PF14332.6 gi|325969847|ref|YP_004246039.1| - 0.08 13.2 0.1 2.4 8.5 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4388) ABC_tran PF00005.27 gi|325969848|ref|YP_004246040.1| - 1.6e-06 28.6 0.0 2e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|325969848|ref|YP_004246040.1| - 0.0002 21.9 0.0 0.00021 21.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|325969848|ref|YP_004246040.1| - 0.0016 18.1 0.0 0.0018 18.0 0.0 1.1 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|325969848|ref|YP_004246040.1| - 0.032 14.0 0.0 0.04 13.7 0.0 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|325969848|ref|YP_004246040.1| - 0.039 13.6 0.0 0.041 13.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|325969848|ref|YP_004246040.1| - 0.052 13.2 0.0 0.053 13.2 0.0 1.0 1 0 0 1 1 1 0 AAA ATPase domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_moutnovskia_768_28_uid63631/NC_015151.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_moutnovskia_768_28_uid63631/NC_015151.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_moutnovskia_768_28_uid63631/NC_015151.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Vulcanisaeta_moutnovskia_768_28_uid63631/NC_015151.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:16:51 2019 # [ok]