# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|296241749|ref|YP_003649236.1| - 3.3e-20 71.5 1.0 9.1e-19 66.9 0.1 3.0 3 0 0 3 3 3 1 CDC6, C terminal AAA_16 PF13191.1 gi|296241749|ref|YP_003649236.1| - 1.1e-11 45.1 0.0 1.4e-10 41.4 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|296241749|ref|YP_003649236.1| - 2.2e-10 40.7 0.0 5.5e-10 39.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|296241749|ref|YP_003649236.1| - 5.5e-10 39.5 0.0 1.3e-09 38.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|296241749|ref|YP_003649236.1| - 1.5e-05 24.8 0.8 3.7e-05 23.5 0.1 1.9 2 0 0 2 2 2 1 Archaeal ATPase DEAD PF00270.24 gi|296241749|ref|YP_003649236.1| - 0.00079 18.9 0.1 0.28 10.6 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|296241749|ref|YP_003649236.1| - 0.00084 18.4 0.0 0.0011 17.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|296241749|ref|YP_003649236.1| - 0.0013 18.1 0.7 0.47 9.8 0.1 3.1 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|296241749|ref|YP_003649236.1| - 0.0027 17.1 0.1 0.68 9.3 0.0 2.6 3 0 0 3 3 3 1 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|296241749|ref|YP_003649236.1| - 0.0035 16.8 0.0 0.0074 15.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|296241749|ref|YP_003649236.1| - 0.0042 16.0 0.0 0.0088 14.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|296241749|ref|YP_003649236.1| - 0.013 14.3 0.0 0.02 13.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|296241749|ref|YP_003649236.1| - 0.015 14.2 0.4 0.17 10.7 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|296241749|ref|YP_003649236.1| - 0.018 15.3 0.1 0.037 14.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|296241749|ref|YP_003649236.1| - 0.024 14.3 0.2 0.061 13.0 0.2 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|296241749|ref|YP_003649236.1| - 0.064 13.0 1.3 0.24 11.1 0.9 2.0 1 1 0 1 1 1 0 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|296241749|ref|YP_003649236.1| - 0.067 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|296241749|ref|YP_003649236.1| - 0.07 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.1 gi|296241749|ref|YP_003649236.1| - 0.074 13.8 1.5 0.21 12.4 1.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|296241749|ref|YP_003649236.1| - 0.082 12.5 0.0 0.36 10.4 0.0 2.0 2 1 0 2 2 2 0 NACHT domain AAA_5 PF07728.9 gi|296241749|ref|YP_003649236.1| - 0.088 12.5 0.2 0.28 10.8 0.2 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|296241749|ref|YP_003649236.1| - 0.094 12.2 0.5 0.17 11.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF99 PF01949.11 gi|296241750|ref|YP_003649237.1| - 8.6e-40 135.8 0.0 1e-39 135.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Ubiq-assoc PF09145.5 gi|296241750|ref|YP_003649237.1| - 0.082 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin-associated ODC_AZ PF02100.12 gi|296241750|ref|YP_003649237.1| - 0.11 12.0 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Ornithine decarboxylase antizyme PEPCK PF00821.13 gi|296241751|ref|YP_003649238.1| - 1.1e-180 601.7 0.0 1.2e-180 601.5 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase Aminotran_3 PF00202.16 gi|296241752|ref|YP_003649239.1| - 4.2e-93 311.9 0.0 5e-93 311.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III PTS_EIIC PF02378.13 gi|296241753|ref|YP_003649240.1| - 0.048 12.4 1.6 0.057 12.2 1.1 1.0 1 0 0 1 1 1 0 Phosphotransferase system, EIIC Tetraspannin PF00335.15 gi|296241753|ref|YP_003649240.1| - 0.089 12.0 3.8 0.11 11.7 2.7 1.0 1 0 0 1 1 1 0 Tetraspanin family DUF1049 PF06305.6 gi|296241753|ref|YP_003649240.1| - 0.19 11.2 2.3 1.1 8.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) DUF4097 PF13349.1 gi|296241753|ref|YP_003649240.1| - 7.6 6.0 7.1 0.9 9.0 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) DUF1469 PF07332.6 gi|296241753|ref|YP_003649240.1| - 8.1 6.1 9.1 47 3.7 6.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Radical_SAM PF04055.16 gi|296241754|ref|YP_003649241.1| - 2e-24 86.6 0.0 2e-24 86.6 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|296241754|ref|YP_003649241.1| - 4.9e-10 39.4 2.1 6.2e-10 39.1 0.0 2.2 3 0 0 3 3 3 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|296241754|ref|YP_003649241.1| - 4.1e-09 36.6 0.1 1e-08 35.4 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_M19 PF01244.16 gi|296241754|ref|YP_003649241.1| - 0.013 14.5 0.0 0.02 13.8 0.0 1.3 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) zf-CHC2 PF01807.15 gi|296241754|ref|YP_003649241.1| - 0.052 13.1 0.4 1.1 8.8 0.3 2.5 2 0 0 2 2 2 0 CHC2 zinc finger AP_endonuc_2 PF01261.19 gi|296241754|ref|YP_003649241.1| - 0.11 11.7 0.0 0.44 9.7 0.0 1.6 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel AAA_18 PF13238.1 gi|296241755|ref|YP_003649242.1| - 2.9e-23 82.5 0.3 4e-23 82.1 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|296241755|ref|YP_003649242.1| - 2.5e-12 47.6 0.3 3.3e-12 47.2 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|296241755|ref|YP_003649242.1| - 3.3e-05 24.0 0.0 0.00012 22.2 0.0 1.9 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|296241755|ref|YP_003649242.1| - 3.8e-05 23.4 0.0 5.8e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|296241755|ref|YP_003649242.1| - 5.2e-05 23.1 0.1 0.00036 20.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|296241755|ref|YP_003649242.1| - 6.6e-05 22.2 0.0 0.0001 21.6 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|296241755|ref|YP_003649242.1| - 0.00014 21.7 0.0 0.00022 21.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|296241755|ref|YP_003649242.1| - 0.00028 21.0 0.0 0.00049 20.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|296241755|ref|YP_003649242.1| - 0.00028 20.7 0.0 0.0011 18.7 0.0 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|296241755|ref|YP_003649242.1| - 0.00043 20.2 0.1 0.00084 19.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|296241755|ref|YP_003649242.1| - 0.00046 19.7 0.0 0.00067 19.2 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|296241755|ref|YP_003649242.1| - 0.00094 19.2 0.0 0.0018 18.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|296241755|ref|YP_003649242.1| - 0.0013 17.8 0.0 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin DUF2075 PF09848.4 gi|296241755|ref|YP_003649242.1| - 0.0013 17.7 0.0 0.0015 17.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) TIP49 PF06068.8 gi|296241755|ref|YP_003649242.1| - 0.0019 16.9 0.4 0.0028 16.4 0.2 1.4 1 1 0 1 1 1 1 TIP49 C-terminus AAA_19 PF13245.1 gi|296241755|ref|YP_003649242.1| - 0.0032 17.1 0.1 0.0059 16.3 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|296241755|ref|YP_003649242.1| - 0.0053 16.3 0.0 0.0077 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|296241755|ref|YP_003649242.1| - 0.0061 16.8 0.0 0.009 16.3 0.0 1.3 1 1 0 1 1 1 1 ABC transporter RNA_helicase PF00910.17 gi|296241755|ref|YP_003649242.1| - 0.0079 16.3 0.0 0.014 15.5 0.0 1.6 2 0 0 2 2 1 1 RNA helicase APS_kinase PF01583.15 gi|296241755|ref|YP_003649242.1| - 0.011 15.3 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.9 gi|296241755|ref|YP_003649242.1| - 0.015 15.0 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B 6PF2K PF01591.13 gi|296241755|ref|YP_003649242.1| - 0.015 14.3 0.1 0.03 13.4 0.0 1.5 2 0 0 2 2 2 0 6-phosphofructo-2-kinase NTPase_1 PF03266.10 gi|296241755|ref|YP_003649242.1| - 0.015 15.0 0.1 0.034 13.8 0.0 1.6 2 0 0 2 2 1 0 NTPase NACHT PF05729.7 gi|296241755|ref|YP_003649242.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|296241755|ref|YP_003649242.1| - 0.016 14.8 0.0 0.11 12.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain PRK PF00485.13 gi|296241755|ref|YP_003649242.1| - 0.016 14.7 0.0 0.031 13.8 0.0 1.5 2 0 0 2 2 1 0 Phosphoribulokinase / Uridine kinase family MMR_HSR1 PF01926.18 gi|296241755|ref|YP_003649242.1| - 0.018 14.9 0.1 0.037 13.9 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|296241755|ref|YP_003649242.1| - 0.025 14.0 0.3 0.064 12.6 0.1 1.7 1 1 1 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|296241755|ref|YP_003649242.1| - 0.029 13.5 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|296241755|ref|YP_003649242.1| - 0.034 13.7 0.0 0.067 12.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|296241755|ref|YP_003649242.1| - 0.044 13.1 0.0 0.22 10.8 0.0 2.0 2 1 0 2 2 2 0 Thymidylate kinase cobW PF02492.14 gi|296241755|ref|YP_003649242.1| - 0.044 13.2 0.0 0.065 12.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|296241755|ref|YP_003649242.1| - 0.044 12.5 0.0 0.064 12.0 0.0 1.2 1 0 0 1 1 1 0 ArgK protein KaiC PF06745.8 gi|296241755|ref|YP_003649242.1| - 0.048 12.7 0.2 0.12 11.4 0.1 1.7 1 1 0 1 1 1 0 KaiC AAA_10 PF12846.2 gi|296241755|ref|YP_003649242.1| - 0.077 12.4 0.0 0.1 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain CoaE PF01121.15 gi|296241755|ref|YP_003649242.1| - 0.11 11.9 0.4 1.6 8.0 0.0 2.3 1 1 1 2 2 2 0 Dephospho-CoA kinase SRP54 PF00448.17 gi|296241755|ref|YP_003649242.1| - 0.16 11.4 0.2 0.4 10.0 0.0 1.8 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|296241756|ref|YP_003649243.1| - 4.7e-16 58.7 0.0 4.7e-12 45.8 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|296241756|ref|YP_003649243.1| - 3.9e-09 35.9 0.0 1.3e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|296241756|ref|YP_003649243.1| - 1.5e-08 34.6 0.0 0.011 15.5 0.0 3.2 2 1 1 3 3 3 3 Dynamin family DUF258 PF03193.11 gi|296241756|ref|YP_003649243.1| - 7.1e-08 31.8 0.0 1.2e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 GTP_EFTU PF00009.22 gi|296241756|ref|YP_003649243.1| - 0.00042 19.8 0.1 0.004 16.6 0.0 2.3 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|296241756|ref|YP_003649243.1| - 0.0064 16.9 0.0 0.092 13.2 0.0 2.2 2 0 0 2 2 2 1 Miro-like protein AAA_17 PF13207.1 gi|296241756|ref|YP_003649243.1| - 0.0087 16.8 0.0 0.024 15.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|296241756|ref|YP_003649243.1| - 0.036 13.5 0.0 0.38 10.2 0.0 2.2 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Shikimate_DH PF01488.15 gi|296241756|ref|YP_003649243.1| - 0.1 12.7 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ThiS PF02597.15 gi|296241757|ref|YP_003649244.1| - 2.2e-05 24.7 1.0 2.5e-05 24.6 0.7 1.0 1 0 0 1 1 1 1 ThiS family UreE_N PF02814.10 gi|296241757|ref|YP_003649244.1| - 0.13 11.7 0.5 0.19 11.2 0.1 1.5 2 0 0 2 2 2 0 UreE urease accessory protein, N-terminal domain ThiF PF00899.16 gi|296241758|ref|YP_003649245.1| - 2.4e-47 160.1 0.1 3.9e-47 159.4 0.1 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|296241758|ref|YP_003649245.1| - 1.9e-16 59.3 0.2 3e-16 58.7 0.1 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|296241758|ref|YP_003649245.1| - 3.3e-06 26.3 0.1 4e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|296241758|ref|YP_003649245.1| - 0.00034 20.7 0.7 0.0008 19.5 0.2 1.7 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|296241758|ref|YP_003649245.1| - 0.042 14.1 0.0 0.094 12.9 0.0 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|296241758|ref|YP_003649245.1| - 0.071 12.2 0.5 0.13 11.3 0.3 1.6 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF287 PF03384.9 gi|296241758|ref|YP_003649245.1| - 0.086 13.0 0.9 0.18 11.9 0.7 1.6 1 0 0 1 1 1 0 Drosophila protein of unknown function, DUF287 adh_short PF00106.20 gi|296241758|ref|YP_003649245.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase ThiS PF02597.15 gi|296241759|ref|YP_003649246.1| - 9.8e-08 32.3 0.0 1.3e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|296241759|ref|YP_003649246.1| - 0.087 12.6 0.0 1.4 8.7 0.0 2.1 2 0 0 2 2 2 0 TGS domain ThiS PF02597.15 gi|296241760|ref|YP_003649247.1| - 0.0016 18.8 0.3 0.0017 18.7 0.2 1.1 1 0 0 1 1 1 1 ThiS family cobW PF02492.14 gi|296241760|ref|YP_003649247.1| - 0.044 13.2 0.3 0.051 13.0 0.2 1.1 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PALP PF00291.20 gi|296241761|ref|YP_003649248.1| - 1.8e-15 56.9 0.0 2.6e-08 33.4 0.0 3.0 2 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme TrmB PF01978.14 gi|296241761|ref|YP_003649248.1| - 0.012 15.3 0.1 0.038 13.7 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Prok-RING_1 PF14446.1 gi|296241761|ref|YP_003649248.1| - 0.017 14.8 0.3 0.029 14.0 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|296241761|ref|YP_003649248.1| - 4.7 6.5 6.8 2 7.7 2.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain SNO PF01174.14 gi|296241762|ref|YP_003649249.1| - 3.1e-53 180.2 0.0 3.4e-53 180.0 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|296241762|ref|YP_003649249.1| - 1.3e-10 41.0 0.1 1.8e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|296241762|ref|YP_003649249.1| - 4e-07 29.6 0.0 7.1e-07 28.8 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|296241762|ref|YP_003649249.1| - 3.7e-06 26.7 0.1 4.7e-06 26.4 0.1 1.2 1 0 0 1 1 1 1 Peptidase family S51 DUF4066 PF13278.1 gi|296241762|ref|YP_003649249.1| - 0.001 18.3 0.0 0.0033 16.7 0.0 1.7 2 0 0 2 2 2 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|296241762|ref|YP_003649249.1| - 0.041 13.3 0.0 0.052 12.9 0.0 1.2 1 0 0 1 1 1 0 DJ-1/PfpI family BPL_N PF09825.4 gi|296241762|ref|YP_003649249.1| - 0.081 11.6 0.1 0.15 10.7 0.0 1.4 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal SOR_SNZ PF01680.12 gi|296241763|ref|YP_003649250.1| - 4e-85 284.6 0.1 5.4e-85 284.2 0.0 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|296241763|ref|YP_003649250.1| - 9e-08 31.4 3.1 2e-06 27.0 0.1 2.3 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|296241763|ref|YP_003649250.1| - 0.00013 20.9 0.5 0.21 10.3 0.0 2.8 2 2 0 2 2 2 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|296241763|ref|YP_003649250.1| - 0.00023 20.5 1.0 0.71 9.0 0.0 3.1 2 1 1 3 3 3 2 Histidine biosynthesis protein NMO PF03060.10 gi|296241763|ref|YP_003649250.1| - 0.00045 19.4 1.6 0.006 15.7 0.0 2.4 2 1 1 3 3 3 1 Nitronate monooxygenase NanE PF04131.9 gi|296241763|ref|YP_003649250.1| - 0.0011 17.9 0.4 0.21 10.5 0.0 3.0 2 1 1 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|296241763|ref|YP_003649250.1| - 0.01 14.9 0.0 0.09 11.8 0.0 2.3 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|296241763|ref|YP_003649250.1| - 0.067 11.7 0.0 0.15 10.5 0.0 1.6 1 0 0 1 1 1 0 Tryptophan synthase alpha chain FMN_dh PF01070.13 gi|296241763|ref|YP_003649250.1| - 0.57 8.9 4.5 0.78 8.5 0.3 2.5 3 0 0 3 3 3 0 FMN-dependent dehydrogenase CitMHS PF03600.11 gi|296241764|ref|YP_003649251.1| - 1.8e-18 66.2 30.5 3.4e-15 55.4 14.5 2.1 1 1 1 2 2 2 2 Citrate transporter ArsB PF02040.10 gi|296241764|ref|YP_003649251.1| - 1.1e-17 64.0 31.4 3.7e-17 62.4 21.5 1.9 1 1 1 2 2 2 1 Arsenical pump membrane protein Na_sulph_symp PF00939.14 gi|296241764|ref|YP_003649251.1| - 5.3e-08 32.1 35.5 4e-05 22.6 13.0 2.6 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region DUF2148 PF09918.4 gi|296241765|ref|YP_003649252.1| - 1.2e-29 101.8 0.2 1.2e-29 101.8 0.1 2.2 2 1 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) MACPF PF01823.14 gi|296241765|ref|YP_003649252.1| - 0.02 14.5 0.0 0.027 14.1 0.0 1.3 1 0 0 1 1 1 0 MAC/Perforin domain Orn_Arg_deC_N PF02784.11 gi|296241765|ref|YP_003649252.1| - 0.082 12.0 0.2 0.4 9.8 0.1 1.8 1 1 1 2 2 2 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DUF4439 PF14530.1 gi|296241765|ref|YP_003649252.1| - 0.1 13.0 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4439) UPF0066 PF01980.11 gi|296241767|ref|YP_003649254.1| - 2.1e-36 124.5 0.0 2.8e-36 124.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Saccharop_dh PF03435.13 gi|296241768|ref|YP_003649255.1| - 2.6e-38 132.0 0.0 3.5e-38 131.5 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|296241768|ref|YP_003649255.1| - 0.00031 21.0 0.0 0.00074 19.8 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|296241768|ref|YP_003649255.1| - 0.032 14.2 0.0 0.058 13.4 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|296241768|ref|YP_003649255.1| - 0.037 13.1 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Zip PF02535.17 gi|296241769|ref|YP_003649256.1| - 3.7e-25 88.6 19.9 2.1e-23 82.8 4.5 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter DUF1129 PF06570.6 gi|296241769|ref|YP_003649256.1| - 0.044 13.0 2.1 0.19 11.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) SIS PF01380.17 gi|296241770|ref|YP_003649257.1| - 3.4e-42 143.1 0.3 2.4e-26 91.8 0.2 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|296241770|ref|YP_003649257.1| - 3.5e-19 69.0 0.0 7.5e-19 68.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|296241770|ref|YP_003649257.1| - 1.1e-17 63.8 1.0 5.4e-13 48.3 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|296241770|ref|YP_003649257.1| - 1.1e-14 54.2 0.0 2e-14 53.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|296241770|ref|YP_003649257.1| - 4.4e-08 32.9 0.9 0.00015 21.4 0.0 3.1 3 1 1 4 4 4 2 SIS domain GATase_4 PF13230.1 gi|296241770|ref|YP_003649257.1| - 0.0032 16.1 0.1 0.005 15.5 0.1 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.4 gi|296241770|ref|YP_003649257.1| - 0.0051 16.5 0.1 0.066 12.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal region AA_kinase PF00696.23 gi|296241771|ref|YP_003649258.1| - 1e-18 67.7 0.0 1.6e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 Amino acid kinase family SpoU_methylase PF00588.14 gi|296241772|ref|YP_003649259.1| - 1.2e-31 109.4 0.0 1.7e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|296241772|ref|YP_003649259.1| - 1.4e-06 27.9 0.0 8.6e-05 22.1 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase MTS PF05175.9 gi|296241773|ref|YP_003649260.1| - 1e-17 64.0 0.0 1.2e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|296241773|ref|YP_003649260.1| - 3.4e-12 46.4 0.0 4.3e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|296241773|ref|YP_003649260.1| - 6.8e-07 29.6 0.1 1.2e-05 25.7 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|296241773|ref|YP_003649260.1| - 3.6e-06 26.6 0.0 5e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|296241773|ref|YP_003649260.1| - 0.0032 16.9 0.7 0.0047 16.3 0.5 1.3 1 0 0 1 1 1 1 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|296241773|ref|YP_003649260.1| - 0.012 14.9 0.0 0.023 14.0 0.0 1.5 1 1 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|296241773|ref|YP_003649260.1| - 0.013 14.6 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|296241773|ref|YP_003649260.1| - 0.015 14.4 0.3 0.027 13.6 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|296241773|ref|YP_003649260.1| - 0.017 14.7 0.1 0.025 14.2 0.1 1.3 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_12 PF08242.7 gi|296241773|ref|YP_003649260.1| - 0.051 14.0 0.0 0.14 12.6 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|296241773|ref|YP_003649260.1| - 0.094 12.2 0.0 0.13 11.8 0.0 1.5 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DUF633 PF04816.7 gi|296241773|ref|YP_003649260.1| - 0.14 11.4 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF633) Eco57I PF07669.6 gi|296241773|ref|YP_003649260.1| - 0.14 12.5 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 Eco57I restriction-modification methylase RrnaAD PF00398.15 gi|296241774|ref|YP_003649261.1| - 7.5e-37 126.7 0.0 8.7e-37 126.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|296241774|ref|YP_003649261.1| - 0.00057 19.3 0.0 0.0016 17.8 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|296241774|ref|YP_003649261.1| - 0.001 19.6 0.0 0.0016 18.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|296241774|ref|YP_003649261.1| - 0.0057 16.2 0.1 0.073 12.5 0.0 2.0 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|296241774|ref|YP_003649261.1| - 0.015 14.9 0.0 0.03 13.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|296241774|ref|YP_003649261.1| - 0.028 14.7 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|296241774|ref|YP_003649261.1| - 0.046 14.2 0.0 0.092 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Toxin_33 PF08121.6 gi|296241774|ref|YP_003649261.1| - 0.079 12.5 0.2 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Waglerin family Methyltransf_12 PF08242.7 gi|296241774|ref|YP_003649261.1| - 0.089 13.2 0.0 0.25 11.8 0.0 1.8 1 0 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.7 gi|296241775|ref|YP_003649262.1| - 9e-61 204.7 1.0 1.1e-60 204.5 0.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|296241775|ref|YP_003649262.1| - 0.00028 20.8 0.1 0.00067 19.6 0.1 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|296241775|ref|YP_003649262.1| - 0.03 14.2 0.0 0.073 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH PF00633.18 gi|296241775|ref|YP_003649262.1| - 0.033 13.9 0.4 0.079 12.6 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif Sigma70_ECF PF07638.6 gi|296241775|ref|YP_003649262.1| - 0.09 12.4 0.0 0.15 11.7 0.0 1.5 1 1 0 1 1 1 0 ECF sigma factor DUF4292 PF14125.1 gi|296241775|ref|YP_003649262.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4292) RNA_pol_Rpb4 PF03874.11 gi|296241776|ref|YP_003649263.1| - 6.4e-15 55.1 0.1 8.4e-15 54.7 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 Tox-REase-9 PF15650.1 gi|296241776|ref|YP_003649263.1| - 0.14 12.3 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 9 Ribosomal_L21e PF01157.13 gi|296241777|ref|YP_003649264.1| - 3e-28 97.5 0.3 3.4e-28 97.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e THUMP PF02926.12 gi|296241778|ref|YP_003649265.1| - 2e-08 34.2 3.5 2.4e-08 33.9 0.3 2.2 2 0 0 2 2 2 1 THUMP domain SRP54 PF00448.17 gi|296241780|ref|YP_003649267.1| - 3e-75 251.9 0.0 4.2e-75 251.5 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|296241780|ref|YP_003649267.1| - 2.2e-26 92.1 0.0 4.8e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|296241780|ref|YP_003649267.1| - 2.7e-09 37.0 1.3 2.7e-09 37.0 0.9 3.0 3 1 1 4 4 3 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|296241780|ref|YP_003649267.1| - 1.8e-07 30.7 0.1 7.7e-07 28.7 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|296241780|ref|YP_003649267.1| - 2.5e-05 23.4 0.0 5.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|296241780|ref|YP_003649267.1| - 4.3e-05 23.6 0.1 0.00019 21.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|296241780|ref|YP_003649267.1| - 0.00014 21.6 0.0 0.00041 20.0 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|296241780|ref|YP_003649267.1| - 0.00046 20.0 0.0 0.00088 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|296241780|ref|YP_003649267.1| - 0.0011 18.4 0.4 0.0082 15.6 0.3 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|296241780|ref|YP_003649267.1| - 0.0015 19.2 4.2 0.0017 19.1 0.2 3.0 3 2 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|296241780|ref|YP_003649267.1| - 0.002 17.5 0.3 0.04 13.3 0.0 2.8 2 2 1 3 3 3 1 AAA domain ArgK PF03308.11 gi|296241780|ref|YP_003649267.1| - 0.0031 16.3 0.0 0.036 12.8 0.0 2.2 2 0 0 2 2 2 1 ArgK protein AAA_19 PF13245.1 gi|296241780|ref|YP_003649267.1| - 0.0076 15.9 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain SRPRB PF09439.5 gi|296241780|ref|YP_003649267.1| - 0.01 15.1 2.1 1.1 8.4 0.0 2.7 3 0 0 3 3 3 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|296241780|ref|YP_003649267.1| - 0.011 15.1 0.2 5.3 6.5 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|296241780|ref|YP_003649267.1| - 0.011 15.2 0.0 0.029 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|296241780|ref|YP_003649267.1| - 0.012 15.1 0.0 0.029 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain APS_kinase PF01583.15 gi|296241780|ref|YP_003649267.1| - 0.014 15.0 0.0 0.035 13.7 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.1 gi|296241780|ref|YP_003649267.1| - 0.021 14.4 0.0 0.051 13.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_31 PF13614.1 gi|296241780|ref|YP_003649267.1| - 0.026 14.4 0.0 1.5 8.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain 6PF2K PF01591.13 gi|296241780|ref|YP_003649267.1| - 0.028 13.4 0.1 0.064 12.3 0.0 1.6 2 0 0 2 2 2 0 6-phosphofructo-2-kinase AAA_28 PF13521.1 gi|296241780|ref|YP_003649267.1| - 0.064 13.2 0.1 0.23 11.3 0.0 2.0 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|296241780|ref|YP_003649267.1| - 0.073 13.3 0.4 0.073 13.3 0.2 2.7 3 1 0 3 3 2 0 AAA domain ABC_tran PF00005.22 gi|296241780|ref|YP_003649267.1| - 0.11 12.7 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|296241780|ref|YP_003649267.1| - 0.12 12.3 0.0 0.3 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain ArsA_ATPase PF02374.10 gi|296241780|ref|YP_003649267.1| - 3.2 6.6 5.8 14 4.6 0.1 2.9 3 1 1 4 4 4 0 Anion-transporting ATPase Ribosomal_L16 PF00252.13 gi|296241781|ref|YP_003649268.1| - 4.6e-31 107.3 0.0 5.2e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.12 gi|296241782|ref|YP_003649269.1| - 1.3e-56 192.1 0.0 1.7e-56 191.7 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Methyltransf_26 PF13659.1 gi|296241783|ref|YP_003649270.1| - 1.5e-11 44.3 0.2 2.2e-11 43.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|296241783|ref|YP_003649270.1| - 3.9e-07 29.5 0.0 5.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|296241783|ref|YP_003649270.1| - 7.8e-07 28.7 0.0 1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|296241783|ref|YP_003649270.1| - 0.0001 22.6 0.0 0.00016 21.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|296241783|ref|YP_003649270.1| - 0.00025 20.2 0.0 0.00033 19.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|296241783|ref|YP_003649270.1| - 0.00032 21.2 0.0 0.00075 20.0 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain UPF0020 PF01170.13 gi|296241783|ref|YP_003649270.1| - 0.011 15.3 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|296241783|ref|YP_003649270.1| - 0.071 12.4 0.1 0.17 11.2 0.0 1.6 2 0 0 2 2 2 0 Methionine biosynthesis protein MetW ECR1_N PF14382.1 gi|296241784|ref|YP_003649271.1| - 1.4e-07 30.6 0.2 3.5e-07 29.3 0.1 1.8 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|296241784|ref|YP_003649271.1| - 0.00044 20.1 0.1 0.0017 18.2 0.0 1.9 1 1 0 1 1 1 1 Exosome component EXOSC1/CSL4 RNA_POL_M_15KD PF02150.11 gi|296241784|ref|YP_003649271.1| - 0.00073 19.1 1.4 0.0013 18.4 0.9 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit S1 PF00575.18 gi|296241784|ref|YP_003649271.1| - 0.0057 16.7 0.1 0.019 15.0 0.1 1.9 1 1 0 1 1 1 1 S1 RNA binding domain OrfB_Zn_ribbon PF07282.6 gi|296241784|ref|YP_003649271.1| - 0.013 15.0 0.9 0.032 13.8 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|296241784|ref|YP_003649271.1| - 0.014 15.0 0.4 0.062 12.9 0.3 1.9 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2318 PF10080.4 gi|296241784|ref|YP_003649271.1| - 0.031 14.0 0.1 0.053 13.2 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Prok-RING_1 PF14446.1 gi|296241784|ref|YP_003649271.1| - 0.042 13.5 0.6 0.065 12.9 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_L37e PF01907.14 gi|296241784|ref|YP_003649271.1| - 0.18 11.6 0.9 0.28 11.0 0.7 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e DUF2067 PF09840.4 gi|296241785|ref|YP_003649272.1| - 1.2e-22 80.3 0.0 1.3e-22 80.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.1 gi|296241786|ref|YP_003649273.1| - 1.7e-21 75.3 0.0 2.1e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|296241786|ref|YP_003649273.1| - 0.0075 15.3 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.13 gi|296241788|ref|YP_003649275.1| - 3.5e-24 84.1 13.1 5.3e-23 80.3 2.3 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) DUF2387 PF09526.5 gi|296241788|ref|YP_003649275.1| - 1.6e-08 34.3 4.3 0.00094 19.0 0.1 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|296241788|ref|YP_003649275.1| - 2.8e-07 30.2 10.4 8.6e-05 22.2 1.5 2.8 2 1 1 3 3 3 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|296241788|ref|YP_003649275.1| - 2e-06 27.5 7.5 0.00093 18.9 0.3 2.8 2 1 0 2 2 2 2 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|296241788|ref|YP_003649275.1| - 2.2e-06 27.2 9.3 2.1e-05 24.1 0.5 2.9 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|296241788|ref|YP_003649275.1| - 2.2e-05 24.0 9.3 0.016 14.8 0.6 2.5 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|296241788|ref|YP_003649275.1| - 3.4e-05 23.0 9.6 0.0068 15.7 1.1 3.4 3 0 0 3 3 3 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|296241788|ref|YP_003649275.1| - 0.00012 21.6 9.7 0.17 11.5 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|296241788|ref|YP_003649275.1| - 0.00015 21.6 12.2 0.69 9.9 0.1 3.9 3 1 0 3 3 3 2 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|296241788|ref|YP_003649275.1| - 0.00019 20.9 9.9 0.2 11.2 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain IBR PF01485.16 gi|296241788|ref|YP_003649275.1| - 0.00047 19.9 5.5 0.11 12.3 0.5 3.1 3 0 0 3 3 3 1 IBR domain zinc_ribbon_2 PF13240.1 gi|296241788|ref|YP_003649275.1| - 0.0007 19.0 15.7 0.37 10.3 0.4 4.2 4 0 0 4 4 4 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|296241788|ref|YP_003649275.1| - 0.0012 18.0 18.6 0.092 11.9 0.3 4.0 3 1 1 4 4 4 2 zinc-ribbon domain Baculo_LEF5_C PF11792.3 gi|296241788|ref|YP_003649275.1| - 0.0019 17.5 5.0 0.0054 16.0 0.0 3.1 3 0 0 3 3 3 1 Baculoviridae late expression factor 5 C-terminal domain DNA_RNApol_7kD PF03604.8 gi|296241788|ref|YP_003649275.1| - 0.0079 15.6 9.8 0.48 9.9 0.6 3.5 3 1 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit Elf1 PF05129.8 gi|296241788|ref|YP_003649275.1| - 0.012 15.2 6.0 1.5 8.5 0.8 2.8 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like DUF2296 PF10058.4 gi|296241788|ref|YP_003649275.1| - 0.02 14.6 9.7 0.053 13.2 0.8 2.9 2 2 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-NADH-PPase PF09297.6 gi|296241788|ref|YP_003649275.1| - 0.021 14.3 2.2 0.021 14.3 1.6 3.7 3 1 1 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Terminase_GpA PF05876.7 gi|296241788|ref|YP_003649275.1| - 0.049 11.9 7.0 0.04 12.2 1.9 2.0 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) FdhE PF04216.7 gi|296241788|ref|YP_003649275.1| - 0.058 13.0 0.4 0.058 13.0 0.2 2.0 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-DNA_Pol PF08996.5 gi|296241788|ref|YP_003649275.1| - 0.069 12.4 2.3 0.24 10.7 0.1 2.1 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger PolC_DP2 PF03833.8 gi|296241788|ref|YP_003649275.1| - 0.071 10.7 5.3 0.057 11.0 0.5 2.0 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Ribosomal_S27e PF01667.12 gi|296241788|ref|YP_003649275.1| - 0.08 12.4 8.7 3.4 7.2 0.3 3.1 2 1 0 2 2 2 0 Ribosomal protein S27 zf-UBP PF02148.14 gi|296241788|ref|YP_003649275.1| - 0.1 12.7 2.2 2.9 8.0 0.1 2.4 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-ISL3 PF14690.1 gi|296241788|ref|YP_003649275.1| - 0.13 12.3 14.2 0.64 10.1 0.1 4.1 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|296241788|ref|YP_003649275.1| - 0.13 12.2 10.6 0.57 10.1 0.0 4.1 4 1 1 5 5 5 0 zinc-finger binding domain of transposase IS66 YdjO PF14169.1 gi|296241788|ref|YP_003649275.1| - 0.18 11.2 0.3 0.18 11.2 0.2 3.1 2 2 1 3 3 3 0 Cold-inducible protein YdjO YhfH PF14149.1 gi|296241788|ref|YP_003649275.1| - 0.18 11.6 9.7 16 5.3 0.1 4.1 3 1 1 4 4 4 0 YhfH-like protein DUF2082 PF09855.4 gi|296241788|ref|YP_003649275.1| - 0.18 11.6 14.6 0.87 9.4 0.0 4.1 3 1 2 5 5 5 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-RING_3 PF14369.1 gi|296241788|ref|YP_003649275.1| - 0.2 11.7 7.4 5.5 7.0 0.1 3.9 4 0 0 4 4 4 0 zinc-finger Lar_restr_allev PF14354.1 gi|296241788|ref|YP_003649275.1| - 0.3 11.4 8.7 7 7.0 1.5 2.6 1 1 1 2 2 2 0 Restriction alleviation protein Lar RPA_interact_C PF14768.1 gi|296241788|ref|YP_003649275.1| - 0.31 11.4 0.2 0.31 11.4 0.1 2.2 2 1 0 2 2 2 0 Replication protein A interacting C-terminal Nudix_N_2 PF14803.1 gi|296241788|ref|YP_003649275.1| - 0.32 10.7 13.8 4.9 6.9 3.6 4.0 3 1 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS91 PF14319.1 gi|296241788|ref|YP_003649275.1| - 0.33 10.4 9.4 1.4 8.4 1.2 3.1 2 2 1 3 3 3 0 Transposase zinc-binding domain zf-TFIIB PF13453.1 gi|296241788|ref|YP_003649275.1| - 0.37 10.0 12.4 0.17 11.1 0.4 3.1 2 2 0 2 2 2 0 Transcription factor zinc-finger NMD3 PF04981.8 gi|296241788|ref|YP_003649275.1| - 0.41 9.7 6.9 9.6 5.2 4.8 2.3 1 1 0 1 1 1 0 NMD3 family HypA PF01155.14 gi|296241788|ref|YP_003649275.1| - 0.41 10.3 9.3 0.056 13.1 0.9 2.8 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family zf-C4_Topoisom PF01396.14 gi|296241788|ref|YP_003649275.1| - 0.48 9.9 15.1 0.54 9.8 0.9 3.3 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-CHY PF05495.7 gi|296241788|ref|YP_003649275.1| - 0.54 10.4 8.6 4.3 7.5 0.7 2.8 1 1 1 2 2 2 0 CHY zinc finger A2L_zn_ribbon PF08792.5 gi|296241788|ref|YP_003649275.1| - 0.71 9.4 14.0 14 5.2 0.1 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|296241788|ref|YP_003649275.1| - 0.76 9.6 9.1 4.8 7.0 0.9 3.6 3 1 0 3 3 3 0 PhnA Zinc-Ribbon DUF3797 PF12677.2 gi|296241788|ref|YP_003649275.1| - 0.92 9.1 0.1 0.92 9.1 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF3797) DM PF00751.13 gi|296241788|ref|YP_003649275.1| - 1.5 8.4 0.0 1.5 8.4 0.0 3.0 4 0 0 4 4 3 0 DM DNA binding domain zf-H2C2_2 PF13465.1 gi|296241788|ref|YP_003649275.1| - 1.5 9.2 13.9 7.6 7.0 0.0 4.1 4 0 0 4 4 4 0 Zinc-finger double domain Ogr_Delta PF04606.7 gi|296241788|ref|YP_003649275.1| - 1.5 8.4 15.6 6.2 6.5 0.3 4.2 2 2 1 3 3 3 0 Ogr/Delta-like zinc finger FYDLN_acid PF09538.5 gi|296241788|ref|YP_003649275.1| - 1.7 9.2 8.1 11 6.6 0.5 3.6 1 1 2 3 3 3 0 Protein of unknown function (FYDLN_acid) GFA PF04828.9 gi|296241788|ref|YP_003649275.1| - 2.1 8.3 11.2 16 5.5 0.1 3.6 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme RecR PF02132.10 gi|296241788|ref|YP_003649275.1| - 2.7 7.5 0.0 2.7 7.5 0.0 3.0 4 0 0 4 4 2 0 RecR protein zf-B_box PF00643.19 gi|296241788|ref|YP_003649275.1| - 3.9 7.4 8.8 6.9 6.6 0.1 3.1 3 1 0 3 3 3 0 B-box zinc finger zinc-ribbons_6 PF07191.7 gi|296241788|ref|YP_003649275.1| - 4.1 7.2 6.8 6.1 6.7 0.1 2.8 2 1 1 3 3 3 0 zinc-ribbons DRP PF06044.7 gi|296241788|ref|YP_003649275.1| - 4.3 6.2 5.0 2.3 7.1 0.4 2.0 1 1 1 2 2 2 0 Dam-replacing family DUF2310 PF10071.4 gi|296241788|ref|YP_003649275.1| - 5.3 5.9 6.4 9.8 5.0 0.0 2.4 2 1 1 3 3 3 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) zf-tcix PF14952.1 gi|296241788|ref|YP_003649275.1| - 5.4 6.4 14.1 4.7 6.6 0.2 3.9 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding zf-Mss51 PF13824.1 gi|296241788|ref|YP_003649275.1| - 5.5 6.9 11.2 3.4 7.5 0.1 3.4 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_recom PF13408.1 gi|296241788|ref|YP_003649275.1| - 8.3 6.7 18.4 23 5.3 4.4 3.4 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-HIT PF04438.11 gi|296241788|ref|YP_003649275.1| - 8.7 6.0 16.0 5 6.8 0.3 4.0 4 0 0 4 4 4 0 HIT zinc finger PCNA_C PF02747.10 gi|296241789|ref|YP_003649276.1| - 2.2e-12 46.9 0.1 3.6e-12 46.2 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|296241789|ref|YP_003649276.1| - 9.6e-12 44.5 0.0 3.4e-11 42.7 0.0 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Chalcone PF02431.10 gi|296241789|ref|YP_003649276.1| - 0.025 13.9 0.0 0.048 13.0 0.0 1.4 1 0 0 1 1 1 0 Chalcone-flavanone isomerase Rad9 PF04139.8 gi|296241789|ref|YP_003649276.1| - 0.048 12.7 0.0 0.2 10.7 0.0 1.8 1 1 0 1 1 1 0 Rad9 DNA_primase_S PF01896.14 gi|296241790|ref|YP_003649277.1| - 3.3e-14 52.9 3.0 1.5e-12 47.5 0.1 2.3 2 0 0 2 2 2 2 Eukaryotic and archaeal DNA primase small subunit DUF1129 PF06570.6 gi|296241792|ref|YP_003649279.1| - 0.0012 18.2 3.8 0.0013 18.0 2.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1129) Tetraspannin PF00335.15 gi|296241792|ref|YP_003649279.1| - 0.57 9.4 6.1 0.89 8.7 4.2 1.3 1 1 0 1 1 1 0 Tetraspanin family Chordopox_A13L PF05961.6 gi|296241792|ref|YP_003649279.1| - 8.2 6.4 6.6 12 5.8 0.1 3.0 2 1 1 3 3 3 0 Chordopoxvirus A13L protein EIF_2_alpha PF07541.7 gi|296241794|ref|YP_003649281.1| - 2.1e-23 82.1 0.0 4.6e-23 81.1 0.0 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|296241794|ref|YP_003649281.1| - 3e-15 56.0 0.2 8.2e-15 54.6 0.2 1.8 1 0 0 1 1 1 1 S1 RNA binding domain Nop10p PF04135.7 gi|296241795|ref|YP_003649282.1| - 1e-24 85.9 0.7 1.2e-24 85.8 0.5 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|296241795|ref|YP_003649282.1| - 0.00028 19.9 3.6 0.00053 19.1 2.5 1.5 1 1 0 1 1 1 1 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|296241795|ref|YP_003649282.1| - 0.0014 18.1 1.4 0.25 10.8 0.1 2.2 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|296241795|ref|YP_003649282.1| - 0.0027 16.9 3.6 0.2 11.0 0.2 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|296241795|ref|YP_003649282.1| - 0.0032 17.1 1.1 0.0032 17.1 0.8 2.1 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zf-tcix PF14952.1 gi|296241795|ref|YP_003649282.1| - 0.013 14.7 3.2 0.19 11.1 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DZR PF12773.2 gi|296241795|ref|YP_003649282.1| - 0.013 15.2 0.3 0.021 14.6 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|296241795|ref|YP_003649282.1| - 0.02 14.3 4.4 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|296241795|ref|YP_003649282.1| - 0.022 14.4 7.9 0.082 12.5 1.0 2.2 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.1 gi|296241795|ref|YP_003649282.1| - 0.022 13.9 1.9 1.2 8.4 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|296241795|ref|YP_003649282.1| - 0.027 13.9 1.2 4.2 6.9 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CpXC PF14353.1 gi|296241795|ref|YP_003649282.1| - 0.028 14.4 1.0 0.31 11.0 0.0 2.1 1 1 1 2 2 2 0 CpXC protein Desulfoferrod_N PF06397.7 gi|296241795|ref|YP_003649282.1| - 0.031 13.6 1.5 0.086 12.2 0.0 2.0 1 1 1 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.1 gi|296241795|ref|YP_003649282.1| - 0.038 14.0 5.8 0.57 10.2 0.2 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|296241795|ref|YP_003649282.1| - 0.049 13.4 1.1 0.95 9.3 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PolC_DP2 PF03833.8 gi|296241795|ref|YP_003649282.1| - 0.088 10.4 0.1 0.084 10.5 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 UPF0547 PF10571.4 gi|296241795|ref|YP_003649282.1| - 0.097 12.3 5.4 2.8 7.7 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_ribbon_recom PF13408.1 gi|296241795|ref|YP_003649282.1| - 0.12 12.7 0.8 2.4 8.4 0.5 2.2 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C2H2_4 PF13894.1 gi|296241795|ref|YP_003649282.1| - 0.12 12.7 2.1 5.1 7.6 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF1610 PF07754.6 gi|296241795|ref|YP_003649282.1| - 0.13 12.4 6.3 0.45 10.6 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) NRDD PF13597.1 gi|296241795|ref|YP_003649282.1| - 0.14 10.2 0.1 0.15 10.0 0.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Prim_Zn_Ribbon PF08273.7 gi|296241795|ref|YP_003649282.1| - 0.18 11.9 2.3 1.7 8.7 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Rad50_zn_hook PF04423.9 gi|296241795|ref|YP_003649282.1| - 0.19 11.2 0.2 0.19 11.2 0.1 2.3 2 0 0 2 2 2 0 Rad50 zinc hook motif Lar_restr_allev PF14354.1 gi|296241795|ref|YP_003649282.1| - 0.21 11.9 4.1 0.5 10.7 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|296241795|ref|YP_003649282.1| - 0.42 10.6 5.0 5 7.1 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-RING_5 PF14634.1 gi|296241795|ref|YP_003649282.1| - 0.43 10.3 2.3 1.1 9.0 1.6 1.7 1 1 0 1 1 1 0 zinc-RING finger domain OrfB_Zn_ribbon PF07282.6 gi|296241795|ref|YP_003649282.1| - 0.44 10.2 2.6 1.5 8.5 1.9 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|296241795|ref|YP_003649282.1| - 0.48 10.0 4.3 4.3 7.0 0.1 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|296241795|ref|YP_003649282.1| - 0.53 10.1 6.2 2.1 8.2 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.7 gi|296241795|ref|YP_003649282.1| - 0.6 9.8 2.5 5.1 6.8 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C2H2 PF00096.21 gi|296241795|ref|YP_003649282.1| - 0.64 10.4 2.6 12 6.4 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF329 PF03884.9 gi|296241795|ref|YP_003649282.1| - 0.65 9.6 5.3 4.5 6.8 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF329) Ribosomal_S27e PF01667.12 gi|296241795|ref|YP_003649282.1| - 0.65 9.5 2.7 6.3 6.4 1.9 2.0 1 1 0 1 1 1 0 Ribosomal protein S27 Cys_rich_CPCC PF14206.1 gi|296241795|ref|YP_003649282.1| - 0.7 9.4 3.8 12 5.5 0.2 2.1 1 1 1 2 2 2 0 Cysteine-rich CPCC zf-Mss51 PF13824.1 gi|296241795|ref|YP_003649282.1| - 1.1 9.1 3.3 2.1 8.2 2.2 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-IS66 PF13005.2 gi|296241795|ref|YP_003649282.1| - 2 8.4 5.0 6.3 6.8 0.2 2.3 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 DUF3797 PF12677.2 gi|296241795|ref|YP_003649282.1| - 2.8 7.6 5.4 7.3 6.3 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) DUF35_N PF12172.3 gi|296241795|ref|YP_003649282.1| - 3 7.8 6.1 3.4 7.6 0.1 2.5 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) EamA PF00892.15 gi|296241796|ref|YP_003649283.1| - 4.9e-32 110.6 31.1 8.9e-17 61.3 9.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|296241796|ref|YP_003649283.1| - 1.1 9.5 30.8 0.035 14.2 4.5 3.5 1 1 2 3 3 3 0 Multidrug resistance efflux transporter Oxidored_q6 PF01058.17 gi|296241798|ref|YP_003649285.1| - 1.4e-21 76.4 0.1 1.7e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|296241799|ref|YP_003649286.1| - 2e-15 55.6 15.5 9.6e-10 37.6 3.6 3.3 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|296241799|ref|YP_003649286.1| - 2.8e-14 53.0 19.1 3.1e-10 40.1 6.8 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296241799|ref|YP_003649286.1| - 6.4e-14 52.0 27.0 9.4e-12 45.1 6.9 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296241799|ref|YP_003649286.1| - 7.7e-13 47.6 25.0 1.2e-08 34.4 2.1 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296241799|ref|YP_003649286.1| - 1.1e-11 44.4 8.1 1.1e-11 44.4 5.6 2.3 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296241799|ref|YP_003649286.1| - 3e-10 39.7 11.4 3e-10 39.7 7.9 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296241799|ref|YP_003649286.1| - 2.4e-09 36.5 17.1 2.8e-08 33.2 2.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|296241799|ref|YP_003649286.1| - 3.8e-08 33.9 14.0 0.001 19.7 3.7 2.7 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|296241799|ref|YP_003649286.1| - 3.9e-07 29.9 8.9 3.9e-07 29.9 6.1 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296241799|ref|YP_003649286.1| - 9.2e-07 29.2 14.2 0.00028 21.2 0.2 3.2 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296241799|ref|YP_003649286.1| - 7.5e-06 26.1 9.8 0.0058 16.9 0.0 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|296241799|ref|YP_003649286.1| - 4.2e-05 23.5 1.8 4.2e-05 23.5 1.2 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|296241799|ref|YP_003649286.1| - 4.4e-05 23.9 0.7 4.4e-05 23.9 0.5 2.7 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|296241799|ref|YP_003649286.1| - 0.0031 17.9 21.5 0.0088 16.5 6.2 3.5 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|296241799|ref|YP_003649286.1| - 0.0052 17.1 4.2 0.0052 17.1 2.9 3.2 4 0 0 4 4 4 1 4Fe-4S single cluster domain NapB PF03892.9 gi|296241799|ref|YP_003649286.1| - 0.0067 16.1 2.2 0.0074 15.9 0.1 2.1 1 1 0 2 2 2 1 Nitrate reductase cytochrome c-type subunit (NapB) Fer4_11 PF13247.1 gi|296241799|ref|YP_003649286.1| - 0.022 14.6 9.6 0.056 13.3 0.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain HypA PF01155.14 gi|296241799|ref|YP_003649286.1| - 2.1 8.0 6.5 0.2 11.3 1.1 1.8 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|296241799|ref|YP_003649286.1| - 3.8 7.5 8.5 6.2 6.8 0.1 3.7 3 1 1 4 4 4 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|296241799|ref|YP_003649286.1| - 3.8 7.9 5.9 19 5.7 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger double domain Complex1_49kDa PF00346.14 gi|296241800|ref|YP_003649287.1| - 9.4e-43 146.1 0.0 1.4e-31 109.5 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|296241800|ref|YP_003649287.1| - 2.9e-18 66.0 0.0 6.1e-17 61.7 0.0 2.4 2 0 0 2 2 2 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.14 gi|296241800|ref|YP_003649287.1| - 5.8e-15 55.0 0.5 5.2e-10 38.7 0.0 2.7 2 1 0 2 2 2 2 Nickel-dependent hydrogenase NADHdh PF00146.16 gi|296241801|ref|YP_003649288.1| - 1e-13 51.0 19.9 1.4e-13 50.5 13.8 1.2 1 0 0 1 1 1 1 NADH dehydrogenase Oxidored_q1 PF00361.15 gi|296241803|ref|YP_003649290.1| - 9.1e-35 120.2 28.4 9.1e-35 120.2 19.7 3.0 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|296241804|ref|YP_003649291.1| - 9.3e-33 113.6 20.9 9.3e-33 113.6 14.5 3.4 1 1 2 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Fer4_11 PF13247.1 gi|296241805|ref|YP_003649292.1| - 1.4e-23 82.6 8.1 1.4e-23 82.6 5.6 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296241805|ref|YP_003649292.1| - 3.6e-16 59.2 60.9 1.9e-08 34.5 7.8 3.4 1 1 4 5 5 5 5 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|296241805|ref|YP_003649292.1| - 2.4e-13 50.1 24.5 2.5e-07 30.8 4.9 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|296241805|ref|YP_003649292.1| - 3.8e-13 48.4 37.5 4.3e-07 29.2 2.3 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.1 gi|296241805|ref|YP_003649292.1| - 1.5e-12 47.0 47.1 5.2e-06 26.1 8.5 3.7 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296241805|ref|YP_003649292.1| - 9.7e-12 44.2 36.5 5.9e-06 25.9 1.9 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|296241805|ref|YP_003649292.1| - 3.7e-11 42.7 40.4 0.0014 19.0 2.8 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.2 gi|296241805|ref|YP_003649292.1| - 2.4e-10 39.6 33.8 1.5e-05 24.6 1.8 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296241805|ref|YP_003649292.1| - 1.8e-08 34.3 22.3 1.4e-05 24.9 4.0 3.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296241805|ref|YP_003649292.1| - 7.5e-08 33.0 23.1 0.046 14.4 0.9 4.5 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|296241805|ref|YP_003649292.1| - 5.8e-07 29.3 36.9 0.00096 19.3 1.8 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|296241805|ref|YP_003649292.1| - 3.6e-06 27.2 22.3 0.024 14.9 0.9 4.4 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296241805|ref|YP_003649292.1| - 4.8e-06 26.8 21.8 0.0082 16.5 1.4 4.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296241805|ref|YP_003649292.1| - 0.00016 22.1 21.4 0.032 14.7 4.8 3.9 2 2 1 3 3 3 2 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|296241805|ref|YP_003649292.1| - 0.00049 19.9 31.5 0.0013 18.5 7.3 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|296241805|ref|YP_003649292.1| - 0.58 9.7 14.5 0.53 9.9 5.8 2.3 1 1 1 2 2 2 0 Growth factor receptor domain IV Pyr_redox_2 PF07992.9 gi|296241806|ref|YP_003649293.1| - 2.1e-24 86.5 1.3 1.3e-22 80.7 0.9 3.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|296241806|ref|YP_003649293.1| - 6.3e-15 55.7 0.0 1.5e-06 28.4 0.0 3.1 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|296241806|ref|YP_003649293.1| - 3.4e-11 42.6 1.7 9.6e-06 24.7 0.1 4.0 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|296241806|ref|YP_003649293.1| - 3.2e-10 39.8 1.8 4.6e-09 36.1 0.0 2.8 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|296241806|ref|YP_003649293.1| - 3.7e-09 36.8 2.5 0.0011 19.2 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|296241806|ref|YP_003649293.1| - 7.6e-08 31.6 0.8 0.0083 15.0 0.1 3.2 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|296241806|ref|YP_003649293.1| - 5.6e-07 28.3 2.5 0.00017 20.2 0.1 3.2 3 1 1 4 4 4 3 HI0933-like protein FAD_oxidored PF12831.2 gi|296241806|ref|YP_003649293.1| - 5.8e-07 28.9 0.1 0.013 14.5 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|296241806|ref|YP_003649293.1| - 1.6e-06 27.7 0.0 0.075 12.5 0.0 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|296241806|ref|YP_003649293.1| - 2.6e-05 23.2 2.7 0.1 11.4 0.0 3.1 4 0 0 4 4 4 2 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|296241806|ref|YP_003649293.1| - 3e-05 24.1 0.0 0.2 11.9 0.0 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|296241806|ref|YP_003649293.1| - 3.9e-05 23.4 0.2 0.0052 16.5 0.0 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|296241806|ref|YP_003649293.1| - 4.4e-05 22.6 0.1 0.00016 20.8 0.0 1.9 3 0 0 3 3 3 1 FAD binding domain Shikimate_DH PF01488.15 gi|296241806|ref|YP_003649293.1| - 7.7e-05 22.8 0.0 0.28 11.2 0.0 2.6 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.12 gi|296241806|ref|YP_003649293.1| - 0.00034 19.7 0.1 0.0019 17.3 0.0 2.2 3 0 0 3 3 3 1 Thi4 family K_oxygenase PF13434.1 gi|296241806|ref|YP_003649293.1| - 0.0023 16.9 0.4 0.16 10.8 0.0 3.3 4 0 0 4 4 4 1 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|296241806|ref|YP_003649293.1| - 0.011 15.3 0.1 0.21 11.2 0.0 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF498 PF04430.9 gi|296241806|ref|YP_003649293.1| - 0.028 13.9 0.1 2.5 7.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF498/DUF598) 2-Hacid_dh_C PF02826.14 gi|296241806|ref|YP_003649293.1| - 0.039 13.0 0.1 0.33 10.0 0.0 2.5 4 0 0 4 4 4 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DJ-1_PfpI PF01965.19 gi|296241806|ref|YP_003649293.1| - 0.048 13.1 0.3 0.18 11.2 0.0 2.0 3 0 0 3 3 3 0 DJ-1/PfpI family NAD_binding_10 PF13460.1 gi|296241806|ref|YP_003649293.1| - 0.075 13.0 0.2 42 4.0 0.1 3.4 4 0 0 4 4 4 0 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|296241806|ref|YP_003649293.1| - 0.1 12.3 0.2 0.32 10.7 0.0 1.9 3 0 0 3 3 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amino_oxidase PF01593.19 gi|296241806|ref|YP_003649293.1| - 0.14 11.1 0.0 0.77 8.7 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase FMO-like PF00743.14 gi|296241806|ref|YP_003649293.1| - 0.17 10.0 0.0 13 3.8 0.0 2.4 3 0 0 3 3 3 0 Flavin-binding monooxygenase-like UDPG_MGDP_dh_N PF03721.9 gi|296241806|ref|YP_003649293.1| - 0.25 10.7 3.7 0.45 9.8 0.1 2.7 4 0 0 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Hydrolase_3 PF08282.7 gi|296241807|ref|YP_003649294.1| - 9.2e-27 94.2 0.1 1.8e-18 67.0 0.1 2.0 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|296241807|ref|YP_003649294.1| - 5.2e-09 35.7 0.0 1.8e-08 34.0 0.0 1.7 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|296241807|ref|YP_003649294.1| - 0.00031 21.2 0.7 0.048 14.0 0.5 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|296241807|ref|YP_003649294.1| - 0.0019 18.4 1.0 0.27 11.3 0.1 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|296241807|ref|YP_003649294.1| - 0.0022 16.9 0.2 0.21 10.4 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase HAD_2 PF13419.1 gi|296241808|ref|YP_003649295.1| - 1.8e-27 96.6 0.0 2.1e-27 96.4 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|296241808|ref|YP_003649295.1| - 4.6e-12 46.8 0.0 3.1e-10 40.8 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|296241808|ref|YP_003649295.1| - 1.1e-09 38.7 0.0 1.3e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|296241808|ref|YP_003649295.1| - 1.5e-08 34.2 0.0 2.5e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.2 gi|296241808|ref|YP_003649295.1| - 0.00012 21.7 0.0 0.016 14.8 0.0 2.1 2 0 0 2 2 2 1 Acid Phosphatase Put_Phosphatase PF06888.7 gi|296241808|ref|YP_003649295.1| - 0.043 12.9 0.0 0.41 9.7 0.0 2.0 2 0 0 2 2 2 0 Putative Phosphatase DUF3895 PF13034.1 gi|296241808|ref|YP_003649295.1| - 0.065 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3895) Hydrolase_3 PF08282.7 gi|296241808|ref|YP_003649295.1| - 0.18 11.3 0.0 2.3 7.7 0.0 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase UbiA PF01040.13 gi|296241810|ref|YP_003649297.1| - 8.3e-31 107.1 15.0 1.2e-30 106.6 10.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family PAP2 PF01569.16 gi|296241811|ref|YP_003649298.1| - 3.2e-19 68.8 3.0 3.2e-19 68.8 2.1 2.9 3 1 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|296241811|ref|YP_003649298.1| - 0.052 13.0 2.4 0.11 11.9 1.6 1.7 1 1 0 1 1 1 0 PAP2 superfamily GHMP_kinases_N PF00288.21 gi|296241811|ref|YP_003649298.1| - 0.06 13.4 0.3 0.35 10.9 0.0 2.3 2 0 0 2 2 2 0 GHMP kinases N terminal domain PAP2_C PF14360.1 gi|296241811|ref|YP_003649298.1| - 0.22 11.7 2.5 0.97 9.7 1.8 2.1 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Vma12 PF11712.3 gi|296241811|ref|YP_003649298.1| - 6.1 6.5 8.2 6.5 6.4 0.5 2.8 3 1 0 3 3 3 0 Endoplasmic reticulum-based factor for assembly of V-ATPase bact-PGI_C PF10432.4 gi|296241812|ref|YP_003649299.1| - 1.8e-29 102.4 0.0 2.9e-29 101.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|296241812|ref|YP_003649299.1| - 1.2e-06 28.1 0.0 4.2e-06 26.3 0.0 1.8 2 0 0 2 2 2 1 SIS domain TrmB PF01978.14 gi|296241813|ref|YP_003649300.1| - 0.00084 18.9 0.3 0.0014 18.2 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|296241813|ref|YP_003649300.1| - 0.086 12.9 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|296241813|ref|YP_003649300.1| - 0.097 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF768 PF05589.6 gi|296241814|ref|YP_003649301.1| - 0.13 12.1 0.0 0.62 10.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF768) DUF2258 PF10015.4 gi|296241816|ref|YP_003649303.1| - 2.8e-25 87.9 1.4 5.8e-25 86.9 1.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) DUF2730 PF10805.3 gi|296241816|ref|YP_003649303.1| - 0.04 13.6 0.2 0.077 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Chlam_vir PF05475.6 gi|296241816|ref|YP_003649303.1| - 0.069 12.2 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 Chlamydia virulence protein PGP3-D DHHA1 PF02272.14 gi|296241817|ref|YP_003649304.1| - 4.1e-12 45.6 0.3 5.8e-11 41.9 0.0 2.4 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.15 gi|296241817|ref|YP_003649304.1| - 8.6e-06 25.4 0.0 1.4e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 DHH family Phage_integrase PF00589.17 gi|296241818|ref|YP_003649305.1| - 3.5e-36 124.4 0.0 5.6e-36 123.7 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|296241818|ref|YP_003649305.1| - 4.3e-09 36.4 0.5 2.9e-08 33.7 0.3 2.3 2 1 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|296241818|ref|YP_003649305.1| - 5.8e-09 36.1 0.0 1.5e-06 28.4 0.0 2.5 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|296241818|ref|YP_003649305.1| - 3e-08 32.5 1.4 4.5e-08 32.0 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|296241818|ref|YP_003649305.1| - 3.2e-06 26.4 2.9 5.6e-06 25.6 2.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|296241818|ref|YP_003649305.1| - 1.2e-05 24.9 0.8 2e-05 24.2 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Integrase_1 PF12835.2 gi|296241818|ref|YP_003649305.1| - 0.0012 18.6 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Integrase DUF2115 PF09888.4 gi|296241818|ref|YP_003649305.1| - 0.002 18.2 0.0 0.43 10.6 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2115) UPF0547 PF10571.4 gi|296241818|ref|YP_003649305.1| - 0.0033 17.0 1.9 0.006 16.2 1.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|296241818|ref|YP_003649305.1| - 0.016 14.4 4.6 0.75 9.1 0.1 2.3 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) Phage_int_SAM_3 PF14659.1 gi|296241818|ref|YP_003649305.1| - 0.017 15.3 0.0 0.064 13.5 0.0 2.0 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain zf-C3HC4_3 PF13920.1 gi|296241818|ref|YP_003649305.1| - 0.043 13.4 0.5 0.064 12.9 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC_2 PF13913.1 gi|296241818|ref|YP_003649305.1| - 0.082 12.5 4.4 2.5 7.8 0.4 2.4 1 1 1 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_S26e PF01283.14 gi|296241818|ref|YP_003649305.1| - 0.086 13.0 0.1 0.16 12.1 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S26e Prok-RING_1 PF14446.1 gi|296241818|ref|YP_003649305.1| - 0.2 11.4 0.3 0.32 10.7 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Peptidase_M28 PF04389.12 gi|296241820|ref|YP_003649307.1| - 3.8e-06 26.7 0.0 8.7e-06 25.5 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|296241820|ref|YP_003649307.1| - 0.028 14.1 0.0 0.062 13.0 0.0 1.6 1 0 0 1 1 1 0 PA domain HGTP_anticodon PF03129.15 gi|296241821|ref|YP_003649308.1| - 1.2e-19 69.9 0.1 2.3e-19 69.1 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|296241821|ref|YP_003649308.1| - 7.2e-18 64.7 0.7 1.3e-17 63.8 0.5 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.6 gi|296241821|ref|YP_003649308.1| - 0.00021 21.1 0.0 0.0011 18.7 0.0 2.1 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal ATP_bind_4 PF01902.12 gi|296241823|ref|YP_003649310.1| - 3.6e-46 157.2 0.0 4e-46 157.1 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region Lactamase_B PF00753.22 gi|296241824|ref|YP_003649311.1| - 1.2e-11 44.6 0.2 1.5e-11 44.3 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|296241824|ref|YP_003649311.1| - 1.1e-07 31.6 0.0 1.5e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|296241824|ref|YP_003649311.1| - 0.0012 18.5 0.0 0.002 17.8 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain B12-binding PF02310.14 gi|296241824|ref|YP_003649311.1| - 0.073 12.9 0.1 0.3 10.9 0.1 1.9 2 0 0 2 2 2 0 B12 binding domain ATP-synt_ab PF00006.20 gi|296241825|ref|YP_003649312.1| - 2e-59 200.6 0.0 3.3e-59 200.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|296241825|ref|YP_003649312.1| - 7.5e-14 52.1 0.4 1.6e-13 51.1 0.1 1.6 2 0 0 2 2 2 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|296241825|ref|YP_003649312.1| - 1.2e-05 25.4 0.5 2.8e-05 24.2 0.3 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|296241825|ref|YP_003649312.1| - 0.00071 19.4 0.6 0.0016 18.3 0.4 1.6 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|296241826|ref|YP_003649313.1| - 8.1e-87 290.2 0.0 1.1e-86 289.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|296241826|ref|YP_003649313.1| - 6e-19 68.5 1.7 1e-18 67.8 1.1 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|296241826|ref|YP_003649313.1| - 1.2e-13 51.0 5.5 3e-13 49.7 3.8 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|296241826|ref|YP_003649313.1| - 0.066 13.1 3.0 0.23 11.3 1.0 2.7 2 0 0 2 2 2 0 HAS barrel domain TcdB_N PF12918.2 gi|296241827|ref|YP_003649314.1| - 0.014 15.4 0.3 0.025 14.6 0.2 1.4 1 0 0 1 1 1 0 TcdB toxin N-terminal helical domain vATP-synt_E PF01991.13 gi|296241829|ref|YP_003649316.1| - 5.2e-17 61.7 17.7 1.4e-16 60.4 12.3 1.6 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|296241829|ref|YP_003649316.1| - 0.0029 17.3 10.8 0.0091 15.7 7.2 1.8 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E DUF87 PF01935.12 gi|296241829|ref|YP_003649316.1| - 0.0048 16.7 5.1 0.0065 16.3 3.5 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 Histone PF00125.19 gi|296241829|ref|YP_003649316.1| - 0.041 13.9 2.3 0.13 12.3 0.0 2.7 2 1 0 3 3 3 0 Core histone H2A/H2B/H3/H4 ATP-synt_B PF00430.13 gi|296241829|ref|YP_003649316.1| - 0.34 10.7 19.4 0.41 10.4 5.8 2.4 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DivIVA PF05103.8 gi|296241829|ref|YP_003649316.1| - 0.36 10.8 13.4 5.8 6.9 9.1 2.4 1 1 0 1 1 1 0 DivIVA protein YfdX PF10938.3 gi|296241829|ref|YP_003649316.1| - 0.89 9.2 5.9 1.1 8.8 1.6 2.4 1 1 2 3 3 3 0 YfdX protein DUF4398 PF14346.1 gi|296241829|ref|YP_003649316.1| - 2.5 8.2 13.9 0.69 10.0 6.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Sds3 PF08598.6 gi|296241829|ref|YP_003649316.1| - 5.4 6.4 10.6 3.5 7.1 6.5 1.5 2 0 0 2 2 2 0 Sds3-like ATP-synt_C PF00137.16 gi|296241830|ref|YP_003649317.1| - 1.1e-09 38.0 14.0 4.8e-05 23.1 0.3 2.1 2 0 0 2 2 2 2 ATP synthase subunit C V_ATPase_I PF01496.14 gi|296241831|ref|YP_003649318.1| - 8.8e-58 195.8 27.3 2.3e-35 121.7 5.3 3.9 2 1 1 3 3 3 3 V-type ATPase 116kDa subunit family Lebercilin PF15619.1 gi|296241831|ref|YP_003649318.1| - 0.62 9.4 6.7 0.55 9.6 0.1 2.6 2 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease BLOC1_2 PF10046.4 gi|296241831|ref|YP_003649318.1| - 3.1 8.0 5.7 4.5 7.4 1.4 2.6 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V-ATPase_G PF03179.10 gi|296241832|ref|YP_003649319.1| - 4.7e-05 23.6 7.7 6.1e-05 23.2 5.3 1.2 1 0 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|296241832|ref|YP_003649319.1| - 0.0048 16.7 8.8 0.24 11.2 1.7 2.1 2 0 0 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|296241832|ref|YP_003649319.1| - 0.019 14.7 6.5 1 9.0 0.2 2.0 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E APG17 PF04108.7 gi|296241832|ref|YP_003649319.1| - 0.026 13.3 2.9 0.031 13.0 2.0 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 ERp29 PF07749.7 gi|296241832|ref|YP_003649319.1| - 0.045 14.3 3.0 0.11 13.1 2.0 1.7 1 1 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain ARGLU PF15346.1 gi|296241832|ref|YP_003649319.1| - 0.07 12.9 9.7 0.097 12.4 6.8 1.2 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 Phage_int_SAM_5 PF13102.1 gi|296241832|ref|YP_003649319.1| - 0.09 12.7 5.2 0.14 12.1 3.6 1.3 1 1 0 1 1 1 0 Phage integrase SAM-like domain FIVAR PF07554.8 gi|296241832|ref|YP_003649319.1| - 0.1 12.8 0.8 0.45 10.7 0.5 2.0 1 1 0 1 1 1 0 Uncharacterised Sugar-binding Domain Syntaxin-18_N PF10496.4 gi|296241832|ref|YP_003649319.1| - 0.12 12.1 0.9 0.18 11.6 0.6 1.3 1 0 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus PhoU PF01895.14 gi|296241832|ref|YP_003649319.1| - 0.13 12.6 4.8 1.4 9.4 0.5 2.1 2 0 0 2 2 2 0 PhoU domain DivIVA PF05103.8 gi|296241832|ref|YP_003649319.1| - 0.15 12.0 9.6 1.2 9.1 2.0 2.1 1 1 0 2 2 2 0 DivIVA protein FACT-Spt16_Nlob PF14826.1 gi|296241832|ref|YP_003649319.1| - 0.15 11.5 1.5 0.17 11.3 1.1 1.1 1 0 0 1 1 1 0 FACT complex subunit SPT16 N-terminal lobe domain DUF745 PF05335.8 gi|296241832|ref|YP_003649319.1| - 0.35 10.3 5.1 0.97 8.9 3.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF745) DUF357 PF04010.8 gi|296241832|ref|YP_003649319.1| - 0.37 10.5 2.1 2.7 7.7 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF357) Cauli_AT PF03233.8 gi|296241832|ref|YP_003649319.1| - 0.47 10.1 4.3 0.57 9.8 3.0 1.3 1 0 0 1 1 1 0 Aphid transmission protein GTSE1_N PF15259.1 gi|296241832|ref|YP_003649319.1| - 1 9.3 4.4 5.4 6.9 2.8 1.8 1 1 1 2 2 2 0 G-2 and S-phase expressed 1 Peptidase_M41 PF01434.13 gi|296241832|ref|YP_003649319.1| - 1.3 8.4 6.1 1.3 8.4 0.5 2.0 1 1 1 2 2 2 0 Peptidase family M41 vATP-synt_E PF01991.13 gi|296241832|ref|YP_003649319.1| - 1.5 8.0 14.6 4.5 6.5 10.1 1.6 1 1 0 1 1 1 0 ATP synthase (E/31 kDa) subunit Orthopox_B11R PF07033.6 gi|296241832|ref|YP_003649319.1| - 3.4 7.2 9.8 2.8 7.4 1.4 2.4 1 1 1 2 2 2 0 Orthopoxvirus B11R protein Cortex-I_coil PF09304.5 gi|296241832|ref|YP_003649319.1| - 5.2 7.1 11.4 7.3 6.6 3.3 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil DUF61 PF01886.11 gi|296241833|ref|YP_003649320.1| - 1.8e-35 121.6 0.6 2.2e-35 121.3 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 ATP-synt_D PF01813.12 gi|296241834|ref|YP_003649321.1| - 2.7e-35 121.7 9.4 3.7e-35 121.2 6.5 1.2 1 0 0 1 1 1 1 ATP synthase subunit D z-alpha PF02295.12 gi|296241834|ref|YP_003649321.1| - 0.057 13.2 0.4 0.13 12.0 0.1 1.8 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain CBS PF00571.23 gi|296241835|ref|YP_003649322.1| - 4.5e-38 128.7 4.3 3.6e-19 68.2 0.2 2.1 2 0 0 2 2 2 2 CBS domain PRC PF05239.11 gi|296241835|ref|YP_003649322.1| - 0.0016 18.2 0.8 0.11 12.4 0.0 2.3 2 0 0 2 2 2 1 PRC-barrel domain Ribosomal_L9_C PF03948.9 gi|296241835|ref|YP_003649322.1| - 0.03 14.3 0.0 0.27 11.3 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain Robl_LC7 PF03259.12 gi|296241835|ref|YP_003649322.1| - 0.045 13.3 0.1 6.6 6.3 0.0 2.5 3 0 0 3 3 3 0 Roadblock/LC7 domain DUF3659 PF12396.3 gi|296241835|ref|YP_003649322.1| - 0.048 13.3 2.4 2.8 7.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) NUDIX PF00293.23 gi|296241837|ref|YP_003649324.1| - 3e-18 65.7 0.0 3.9e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain UPF0150 PF03681.10 gi|296241837|ref|YP_003649324.1| - 0.027 14.0 0.1 1.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0150) AP_endonuc_2 PF01261.19 gi|296241838|ref|YP_003649325.1| - 2.7e-21 75.8 0.0 3.2e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel CDP-OH_P_transf PF01066.16 gi|296241839|ref|YP_003649326.1| - 1.1e-16 60.9 13.1 3.3e-16 59.4 9.1 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_10 PF12846.2 gi|296241840|ref|YP_003649327.1| - 1.5e-22 80.4 0.7 3.7e-14 52.8 0.3 3.1 3 1 0 3 3 2 2 AAA-like domain DUF87 PF01935.12 gi|296241840|ref|YP_003649327.1| - 1.5e-11 44.6 0.1 1.1e-10 41.6 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|296241840|ref|YP_003649327.1| - 1.9e-10 40.5 0.0 8.1e-08 31.9 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|296241840|ref|YP_003649327.1| - 7.3e-09 34.5 0.1 0.00017 20.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|296241840|ref|YP_003649327.1| - 1.3e-07 31.8 0.0 0.00046 20.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|296241840|ref|YP_003649327.1| - 2.2e-07 31.1 0.2 0.0066 16.6 0.1 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|296241840|ref|YP_003649327.1| - 9.1e-06 24.5 0.0 1.9e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|296241840|ref|YP_003649327.1| - 6.3e-05 22.0 0.0 0.0005 19.0 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|296241840|ref|YP_003649327.1| - 0.00011 22.0 0.1 0.16 11.6 0.0 2.5 2 1 0 2 2 2 2 Archaeal ATPase AAA_25 PF13481.1 gi|296241840|ref|YP_003649327.1| - 0.00031 20.1 0.0 0.41 10.0 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|296241840|ref|YP_003649327.1| - 0.0005 20.8 0.2 0.026 15.3 0.1 3.5 2 1 1 3 3 3 1 AAA domain ResIII PF04851.10 gi|296241840|ref|YP_003649327.1| - 0.00051 19.9 0.1 0.51 10.1 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|296241840|ref|YP_003649327.1| - 0.00069 19.1 0.0 0.72 9.3 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase Zot PF05707.7 gi|296241840|ref|YP_003649327.1| - 0.00078 18.9 0.2 0.0054 16.2 0.0 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) MobB PF03205.9 gi|296241840|ref|YP_003649327.1| - 0.0011 18.7 0.2 0.0025 17.5 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|296241840|ref|YP_003649327.1| - 0.0017 18.3 0.0 0.046 13.6 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.17 gi|296241840|ref|YP_003649327.1| - 0.0029 17.7 0.0 0.0061 16.7 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_19 PF13245.1 gi|296241840|ref|YP_003649327.1| - 0.0047 16.6 0.0 0.019 14.6 0.0 2.0 2 0 0 2 2 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|296241840|ref|YP_003649327.1| - 0.0049 16.0 0.0 0.065 12.3 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin Pox_A32 PF04665.7 gi|296241840|ref|YP_003649327.1| - 0.0093 15.2 0.1 0.022 14.0 0.1 1.5 1 0 0 1 1 1 1 Poxvirus A32 protein DUF2075 PF09848.4 gi|296241840|ref|YP_003649327.1| - 0.012 14.6 0.0 2.4 7.0 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_18 PF13238.1 gi|296241840|ref|YP_003649327.1| - 0.012 15.9 0.0 0.049 13.9 0.0 2.1 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|296241840|ref|YP_003649327.1| - 0.014 15.0 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|296241840|ref|YP_003649327.1| - 0.015 15.8 0.0 0.054 14.0 0.0 2.1 1 0 0 1 1 1 0 Miro-like protein cobW PF02492.14 gi|296241840|ref|YP_003649327.1| - 0.019 14.3 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|296241840|ref|YP_003649327.1| - 0.02 14.8 0.0 0.31 10.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|296241840|ref|YP_003649327.1| - 0.022 13.4 0.0 0.036 12.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.1 gi|296241840|ref|YP_003649327.1| - 0.024 14.5 0.0 0.062 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|296241840|ref|YP_003649327.1| - 0.03 13.0 0.1 0.086 11.4 0.0 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein ABC_tran PF00005.22 gi|296241840|ref|YP_003649327.1| - 0.03 14.6 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|296241840|ref|YP_003649327.1| - 0.034 13.6 0.1 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.12 gi|296241840|ref|YP_003649327.1| - 0.037 13.5 0.0 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_32 PF13654.1 gi|296241840|ref|YP_003649327.1| - 0.077 11.6 0.0 0.16 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Septin PF00735.13 gi|296241840|ref|YP_003649327.1| - 0.087 11.8 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Septin AAA_23 PF13476.1 gi|296241840|ref|YP_003649327.1| - 0.1 12.9 0.0 0.22 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|296241840|ref|YP_003649327.1| - 0.1 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.10 gi|296241840|ref|YP_003649327.1| - 0.1 12.2 0.6 0.23 11.1 0.2 1.8 2 0 0 2 2 1 0 NTPase PduV-EutP PF10662.4 gi|296241840|ref|YP_003649327.1| - 0.16 11.4 0.1 0.59 9.6 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.17 gi|296241840|ref|YP_003649327.1| - 0.16 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NurA PF09376.5 gi|296241841|ref|YP_003649328.1| - 4.5e-07 29.5 3.3 6.7e-06 25.7 2.3 2.8 1 1 0 1 1 1 1 NurA domain DHH PF01368.15 gi|296241842|ref|YP_003649329.1| - 0.00073 19.2 0.1 0.0012 18.4 0.0 1.3 1 0 0 1 1 1 1 DHH family Hist_deacetyl PF00850.14 gi|296241843|ref|YP_003649330.1| - 1.1e-56 192.4 0.0 1.3e-56 192.1 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain CYTH PF01928.16 gi|296241844|ref|YP_003649331.1| - 4.7e-17 62.2 1.0 5.6e-17 62.0 0.7 1.1 1 0 0 1 1 1 1 CYTH domain NUDIX PF00293.23 gi|296241845|ref|YP_003649332.1| - 2.1e-19 69.5 0.0 2.3e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain PDDEXK_1 PF12705.2 gi|296241846|ref|YP_003649333.1| - 2.4e-10 40.2 2.3 5.9e-08 32.4 0.6 2.3 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|296241846|ref|YP_003649333.1| - 3.2e-07 30.4 0.6 4.4e-07 29.9 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.1 gi|296241846|ref|YP_003649333.1| - 5.5e-07 29.6 0.6 9.5e-07 28.8 0.4 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.1 gi|296241846|ref|YP_003649333.1| - 0.0041 16.8 0.2 0.0074 16.0 0.1 1.5 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) Dna2 PF08696.6 gi|296241846|ref|YP_003649333.1| - 0.0066 15.7 0.0 0.053 12.8 0.0 2.0 1 1 1 2 2 2 1 DNA replication factor Dna2 Lectin_N PF03954.9 gi|296241847|ref|YP_003649334.1| - 0.097 12.0 0.3 0.17 11.2 0.2 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain SAM_adeno_trans PF01887.11 gi|296241848|ref|YP_003649335.1| - 2.2e-88 295.6 0.0 2.5e-88 295.4 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF2139 PF09910.4 gi|296241850|ref|YP_003649337.1| - 2e-124 415.0 0.2 2.4e-124 414.7 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) AFOR_C PF01314.13 gi|296241851|ref|YP_003649338.1| - 4.4e-121 404.1 0.1 5.3e-121 403.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|296241851|ref|YP_003649338.1| - 6.9e-79 263.8 0.2 1e-78 263.3 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain CTP-dep_RFKase PF01982.11 gi|296241852|ref|YP_003649339.1| - 6e-30 103.3 0.0 7.1e-30 103.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF120 Oxidored_q1 PF00361.15 gi|296241853|ref|YP_003649340.1| - 5.5e-50 170.1 21.7 5.5e-50 170.1 15.0 2.5 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains MNHE PF01899.11 gi|296241854|ref|YP_003649341.1| - 3.9e-32 111.0 0.2 4.5e-32 110.8 0.1 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit ATP_synt_I PF03899.10 gi|296241854|ref|YP_003649341.1| - 0.00036 20.6 2.0 0.00068 19.7 1.4 1.4 1 0 0 1 1 1 1 ATP synthase I chain Oxidored_q2 PF00420.19 gi|296241855|ref|YP_003649342.1| - 1.4e-17 63.0 3.2 1.8e-17 62.6 2.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MnhB PF04039.8 gi|296241856|ref|YP_003649343.1| - 2e-17 63.3 10.4 2e-17 63.3 7.2 1.9 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF1109 PF06532.6 gi|296241856|ref|YP_003649343.1| - 0.01 15.2 2.3 0.01 15.2 1.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1109) DUF2106 PF09879.4 gi|296241856|ref|YP_003649343.1| - 0.017 14.4 0.0 0.038 13.3 0.0 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) DUF4040 PF13244.1 gi|296241857|ref|YP_003649344.1| - 1.1e-12 47.7 6.9 1.6e-12 47.2 4.8 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF4305 PF14146.1 gi|296241857|ref|YP_003649344.1| - 0.007 16.0 0.9 3.3 7.5 0.0 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF4305) Oxidored_q3 PF00499.15 gi|296241857|ref|YP_003649344.1| - 0.058 13.1 6.3 0.018 14.8 2.6 1.4 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2273 PF10031.4 gi|296241857|ref|YP_003649344.1| - 0.19 11.3 2.2 0.65 9.6 0.1 2.2 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) SHP PF03579.8 gi|296241857|ref|YP_003649344.1| - 2.1 7.7 5.3 1.2 8.5 2.2 1.8 1 1 1 2 2 2 0 Small hydrophobic protein PhaG_MnhG_YufB PF03334.9 gi|296241858|ref|YP_003649345.1| - 1.2e-19 70.1 8.8 1.6e-19 69.7 6.1 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF2583 PF10762.4 gi|296241858|ref|YP_003649345.1| - 0.024 14.7 2.4 0.024 14.7 1.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) SBF PF01758.11 gi|296241858|ref|YP_003649345.1| - 0.033 13.5 0.9 0.035 13.5 0.6 1.2 1 0 0 1 1 1 0 Sodium Bile acid symporter family DUF973 PF06157.6 gi|296241858|ref|YP_003649345.1| - 0.12 11.3 3.2 0.14 11.0 2.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Virul_fac_BrkB PF03631.10 gi|296241858|ref|YP_003649345.1| - 0.49 9.6 8.3 0.65 9.3 5.7 1.2 1 0 0 1 1 1 0 Virulence factor BrkB Tetraspannin PF00335.15 gi|296241858|ref|YP_003649345.1| - 1.2 8.3 7.4 2.7 7.2 5.1 1.5 1 1 0 1 1 1 0 Tetraspanin family YrhK PF14145.1 gi|296241858|ref|YP_003649345.1| - 8 6.2 10.0 0.43 10.2 0.5 2.6 2 1 0 2 2 2 0 YrhK-like protein MrpF_PhaF PF04066.8 gi|296241859|ref|YP_003649346.1| - 8.2e-05 22.8 3.5 8.2e-05 22.8 2.4 1.5 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) p12I PF12233.3 gi|296241859|ref|YP_003649346.1| - 0.068 13.4 4.9 0.091 13.0 3.4 1.3 1 0 0 1 1 1 0 Human adult T cell leukemia/lymphoma virus protein ABC_tran PF00005.22 gi|296241860|ref|YP_003649347.1| - 2.3e-27 95.9 0.0 4.1e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296241860|ref|YP_003649347.1| - 6.4e-09 36.1 0.0 0.00048 20.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|296241860|ref|YP_003649347.1| - 1e-06 29.1 0.1 4.4e-06 27.1 0.0 2.1 2 1 1 3 3 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|296241860|ref|YP_003649347.1| - 9.4e-05 21.7 0.0 0.11 11.7 0.0 2.5 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain NB-ARC PF00931.17 gi|296241860|ref|YP_003649347.1| - 0.00032 19.6 0.6 0.047 12.5 0.1 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_23 PF13476.1 gi|296241860|ref|YP_003649347.1| - 0.0026 18.1 0.4 0.0058 16.9 0.3 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|296241860|ref|YP_003649347.1| - 0.0054 16.2 0.2 0.0098 15.4 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.17 gi|296241860|ref|YP_003649347.1| - 0.0087 15.5 0.1 0.031 13.7 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|296241860|ref|YP_003649347.1| - 0.016 14.6 0.4 0.8 9.0 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_11 PF13086.1 gi|296241860|ref|YP_003649347.1| - 0.046 13.2 0.0 0.11 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|296241860|ref|YP_003649347.1| - 0.077 13.1 2.3 1.2 9.3 0.7 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|296241860|ref|YP_003649347.1| - 0.078 12.5 0.0 0.24 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|296241860|ref|YP_003649347.1| - 0.094 12.4 0.1 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain ABC2_membrane PF01061.19 gi|296241861|ref|YP_003649348.1| - 9.4e-13 47.8 12.9 9.4e-13 47.8 8.9 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|296241861|ref|YP_003649348.1| - 8.4e-08 31.6 20.1 1.1e-07 31.3 13.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|296241861|ref|YP_003649348.1| - 0.00031 19.8 23.0 0.00039 19.5 15.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|296241861|ref|YP_003649348.1| - 0.0038 16.1 18.1 0.0076 15.1 12.6 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF1077 PF06417.7 gi|296241861|ref|YP_003649348.1| - 1 8.6 4.5 26 4.1 1.8 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1077) Syndecan PF01034.15 gi|296241861|ref|YP_003649348.1| - 2.2 7.9 4.7 0.98 9.1 0.7 2.3 2 0 0 2 2 2 0 Syndecan domain ABC2_membrane PF01061.19 gi|296241862|ref|YP_003649349.1| - 9.3e-20 70.6 14.2 9.3e-20 70.6 9.8 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|296241862|ref|YP_003649349.1| - 5.7e-09 35.2 13.2 6e-09 35.1 8.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|296241862|ref|YP_003649349.1| - 8.6e-09 34.8 16.1 1.1e-08 34.5 11.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|296241862|ref|YP_003649349.1| - 2.3e-07 30.2 15.8 3.2e-07 29.7 11.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|296241862|ref|YP_003649349.1| - 0.0033 16.7 14.9 0.0094 15.2 10.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF998 PF06197.8 gi|296241863|ref|YP_003649350.1| - 5.1e-19 68.2 16.7 6.7e-19 67.9 11.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Adeno_E3_14_5 PF04834.7 gi|296241863|ref|YP_003649350.1| - 0.043 14.2 0.4 0.2 12.0 0.1 2.0 2 0 0 2 2 2 0 Early E3 14.5 kDa protein DUF3671 PF12420.3 gi|296241863|ref|YP_003649350.1| - 0.42 10.5 2.2 1.1 9.2 1.5 1.8 1 1 0 1 1 1 0 Protein of unknown function DUF3784 PF12650.2 gi|296241863|ref|YP_003649350.1| - 0.82 9.6 8.8 0.12 12.3 2.5 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF3784) DUF962 PF06127.6 gi|296241863|ref|YP_003649350.1| - 1.7 8.5 4.3 4.4 7.2 3.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF962) DUF4341 PF14241.1 gi|296241863|ref|YP_003649350.1| - 5.1 6.8 8.1 0.97 9.1 1.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4341) DUF1772 PF08592.6 gi|296241863|ref|YP_003649350.1| - 8.1 6.1 11.3 13 5.4 2.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) Ribosomal_S25 PF03297.10 gi|296241864|ref|YP_003649351.1| - 4.1e-07 29.9 0.3 4.6e-07 29.8 0.2 1.1 1 0 0 1 1 1 1 S25 ribosomal protein EAP30 PF04157.11 gi|296241864|ref|YP_003649351.1| - 0.022 13.9 0.1 0.03 13.5 0.1 1.3 1 1 0 1 1 1 0 EAP30/Vps36 family Fe_dep_repress PF01325.14 gi|296241864|ref|YP_003649351.1| - 0.084 12.8 0.2 0.16 11.9 0.1 1.5 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain YWFCY PF14293.1 gi|296241864|ref|YP_003649351.1| - 0.13 12.1 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 YWFCY protein AFOR_C PF01314.13 gi|296241865|ref|YP_003649352.1| - 5.2e-121 403.9 0.0 6.6e-121 403.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|296241865|ref|YP_003649352.1| - 2.2e-82 275.2 0.0 4.4e-82 274.3 0.0 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.15 gi|296241866|ref|YP_003649353.1| - 5.2e-08 33.1 0.0 5.9e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|296241866|ref|YP_003649353.1| - 0.0086 16.1 0.1 0.0097 16.0 0.0 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) Ad_cyc_g-alpha PF08509.6 gi|296241866|ref|YP_003649353.1| - 0.031 13.5 0.8 0.054 12.8 0.6 1.4 1 0 0 1 1 1 0 Adenylate cyclase G-alpha binding domain MCM PF00493.18 gi|296241867|ref|YP_003649354.1| - 2.4e-139 463.7 0.0 3.5e-139 463.2 0.0 1.2 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|296241867|ref|YP_003649354.1| - 6.5e-24 84.7 2.1 1.7e-23 83.4 0.5 2.4 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|296241867|ref|YP_003649354.1| - 1e-08 34.9 0.0 3.2e-08 33.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|296241867|ref|YP_003649354.1| - 2.5e-06 26.8 0.0 0.00076 18.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|296241867|ref|YP_003649354.1| - 0.00043 19.8 0.0 0.0012 18.4 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|296241867|ref|YP_003649354.1| - 0.004 16.6 0.1 0.03 13.7 0.1 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|296241867|ref|YP_003649354.1| - 0.012 15.5 0.7 4.1 7.3 0.1 2.9 2 1 0 2 2 2 0 AAA ATPase domain CoaE PF01121.15 gi|296241867|ref|YP_003649354.1| - 0.089 12.1 0.8 0.22 10.8 0.1 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase Sld5 PF05916.6 gi|296241868|ref|YP_003649355.1| - 4e-10 39.9 0.9 6.2e-10 39.3 0.6 1.3 1 0 0 1 1 1 1 GINS complex protein Rep_fac_C PF08542.6 gi|296241869|ref|YP_003649356.1| - 3.6e-22 78.1 0.1 8.6e-22 76.9 0.1 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|296241869|ref|YP_003649356.1| - 5.1e-16 59.0 0.0 1e-15 58.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|296241869|ref|YP_003649356.1| - 1.8e-14 53.7 0.1 4.1e-10 39.5 0.2 2.4 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|296241869|ref|YP_003649356.1| - 2.3e-11 43.0 0.0 6.3e-05 21.8 0.0 2.1 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|296241869|ref|YP_003649356.1| - 3.4e-09 36.0 0.0 8.8e-09 34.7 0.0 1.6 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|296241869|ref|YP_003649356.1| - 3e-08 33.8 0.2 0.0039 17.3 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|296241869|ref|YP_003649356.1| - 7.1e-08 32.1 0.0 1.4e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.8 gi|296241869|ref|YP_003649356.1| - 1.1e-07 31.5 0.0 5e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|296241869|ref|YP_003649356.1| - 4.2e-07 30.1 0.0 6.8e-05 22.9 0.0 2.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|296241869|ref|YP_003649356.1| - 4.6e-07 29.7 0.0 4e-06 26.7 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|296241869|ref|YP_003649356.1| - 5.3e-06 26.2 0.2 5.1e-05 23.0 0.0 2.7 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|296241869|ref|YP_003649356.1| - 2.2e-05 23.3 0.0 0.065 11.9 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_18 PF13238.1 gi|296241869|ref|YP_003649356.1| - 5.1e-05 23.5 0.0 0.00024 21.4 0.0 2.0 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|296241869|ref|YP_003649356.1| - 0.0001 21.8 0.0 0.00034 20.0 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|296241869|ref|YP_003649356.1| - 0.00011 21.4 0.1 0.0022 17.1 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|296241869|ref|YP_003649356.1| - 0.00013 21.2 0.1 0.037 13.2 0.0 2.6 1 1 2 3 3 3 1 PhoH-like protein Sigma54_activ_2 PF14532.1 gi|296241869|ref|YP_003649356.1| - 0.00016 21.7 0.0 0.00052 20.0 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|296241869|ref|YP_003649356.1| - 0.00023 20.8 0.0 0.00055 19.6 0.0 1.8 1 1 0 1 1 1 1 Part of AAA domain AAA_10 PF12846.2 gi|296241869|ref|YP_003649356.1| - 0.00032 20.2 0.0 0.0037 16.7 0.0 2.5 1 1 0 1 1 1 1 AAA-like domain KTI12 PF08433.5 gi|296241869|ref|YP_003649356.1| - 0.00088 18.5 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|296241869|ref|YP_003649356.1| - 0.0018 19.0 0.0 0.0048 17.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|296241869|ref|YP_003649356.1| - 0.0022 17.4 0.0 0.011 15.2 0.0 2.1 2 1 0 2 2 2 1 FtsK/SpoIIIE family NTPase_1 PF03266.10 gi|296241869|ref|YP_003649356.1| - 0.0036 17.0 0.0 0.55 9.9 0.0 2.5 1 1 1 2 2 2 1 NTPase NACHT PF05729.7 gi|296241869|ref|YP_003649356.1| - 0.005 16.5 0.0 0.14 11.7 0.0 2.3 1 1 0 1 1 1 1 NACHT domain AAA_33 PF13671.1 gi|296241869|ref|YP_003649356.1| - 0.0057 16.5 0.0 0.013 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|296241869|ref|YP_003649356.1| - 0.0076 15.2 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|296241869|ref|YP_003649356.1| - 0.0079 15.6 0.1 0.032 13.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|296241869|ref|YP_003649356.1| - 0.009 15.5 0.0 0.4 10.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|296241869|ref|YP_003649356.1| - 0.011 15.6 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) SNF2_N PF00176.18 gi|296241869|ref|YP_003649356.1| - 0.012 14.4 0.0 1.1 7.9 0.0 2.2 1 1 1 2 2 2 0 SNF2 family N-terminal domain ResIII PF04851.10 gi|296241869|ref|YP_003649356.1| - 0.014 15.2 0.0 0.059 13.2 0.0 1.9 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|296241869|ref|YP_003649356.1| - 0.02 14.4 0.2 0.26 10.8 0.1 2.5 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|296241869|ref|YP_003649356.1| - 0.02 15.0 0.0 0.042 14.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase T2SE PF00437.15 gi|296241869|ref|YP_003649356.1| - 0.022 13.6 0.0 0.095 11.5 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.1 gi|296241869|ref|YP_003649356.1| - 0.028 14.3 0.0 0.052 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|296241869|ref|YP_003649356.1| - 0.03 14.0 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_11 PF13086.1 gi|296241869|ref|YP_003649356.1| - 0.03 13.9 0.1 0.042 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|296241869|ref|YP_003649356.1| - 0.038 13.4 0.1 0.37 10.2 0.0 2.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase Zeta_toxin PF06414.7 gi|296241869|ref|YP_003649356.1| - 0.045 12.8 0.0 0.079 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|296241869|ref|YP_003649356.1| - 0.056 13.7 0.0 0.14 12.4 0.0 1.8 2 1 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|296241869|ref|YP_003649356.1| - 0.063 12.8 0.1 0.17 11.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|296241869|ref|YP_003649356.1| - 0.069 12.8 0.0 0.23 11.1 0.0 1.9 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|296241869|ref|YP_003649356.1| - 0.072 12.6 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.15 gi|296241869|ref|YP_003649356.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase Viral_helicase1 PF01443.13 gi|296241869|ref|YP_003649356.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA PF00004.24 gi|296241870|ref|YP_003649357.1| - 1.3e-15 57.7 0.2 5.8e-15 55.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|296241870|ref|YP_003649357.1| - 1.1e-13 50.7 0.8 7.2e-07 28.2 0.0 3.1 2 2 2 4 4 4 2 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|296241870|ref|YP_003649357.1| - 1.1e-07 32.0 0.4 8.8e-07 29.0 0.0 2.8 2 1 0 2 2 1 1 AAA ATPase domain RuvB_N PF05496.7 gi|296241870|ref|YP_003649357.1| - 2e-07 30.3 0.0 1.2e-05 24.4 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|296241870|ref|YP_003649357.1| - 4.5e-07 29.8 0.0 8.5e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|296241870|ref|YP_003649357.1| - 7.3e-06 25.7 0.0 3.1e-05 23.7 0.0 2.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) DNA_pol3_delta PF06144.8 gi|296241870|ref|YP_003649357.1| - 2.1e-05 24.1 0.0 3.5e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_17 PF13207.1 gi|296241870|ref|YP_003649357.1| - 4.2e-05 24.3 0.9 0.00053 20.7 0.0 2.7 2 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|296241870|ref|YP_003649357.1| - 6.7e-05 22.7 0.7 0.00026 20.7 0.0 2.3 2 1 0 2 2 2 1 Archaeal ATPase DUF815 PF05673.8 gi|296241870|ref|YP_003649357.1| - 7e-05 21.8 0.0 0.00014 20.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|296241870|ref|YP_003649357.1| - 7.5e-05 22.8 1.2 0.0019 18.3 0.2 2.9 2 1 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|296241870|ref|YP_003649357.1| - 0.00055 19.9 0.2 0.012 15.5 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_2 PF07724.9 gi|296241870|ref|YP_003649357.1| - 0.00093 19.1 0.5 0.0019 18.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|296241870|ref|YP_003649357.1| - 0.00097 17.9 0.1 0.11 11.1 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus Zeta_toxin PF06414.7 gi|296241870|ref|YP_003649357.1| - 0.0013 17.8 0.0 0.0023 17.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|296241870|ref|YP_003649357.1| - 0.0014 18.5 0.0 0.0035 17.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|296241870|ref|YP_003649357.1| - 0.0015 17.4 0.0 0.0072 15.2 0.0 2.1 1 1 1 2 2 2 1 NB-ARC domain RNA_helicase PF00910.17 gi|296241870|ref|YP_003649357.1| - 0.0017 18.5 0.0 0.0043 17.2 0.0 1.7 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.7 gi|296241870|ref|YP_003649357.1| - 0.0021 17.7 0.2 0.05 13.2 0.0 3.0 3 1 0 4 4 4 1 NACHT domain IstB_IS21 PF01695.12 gi|296241870|ref|YP_003649357.1| - 0.0034 16.8 0.0 0.0065 15.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein Viral_helicase1 PF01443.13 gi|296241870|ref|YP_003649357.1| - 0.0069 15.9 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase Bac_DnaA PF00308.13 gi|296241870|ref|YP_003649357.1| - 0.0071 16.0 0.1 0.035 13.7 0.1 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein RFC1 PF08519.7 gi|296241870|ref|YP_003649357.1| - 0.0092 15.7 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain ABC_tran PF00005.22 gi|296241870|ref|YP_003649357.1| - 0.023 14.9 0.1 0.15 12.3 0.0 2.2 1 1 1 2 2 2 0 ABC transporter AAA_29 PF13555.1 gi|296241870|ref|YP_003649357.1| - 0.034 13.6 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|296241870|ref|YP_003649357.1| - 0.059 13.1 0.0 0.2 11.4 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|296241870|ref|YP_003649357.1| - 0.081 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Sigma54_activ_2 PF14532.1 gi|296241870|ref|YP_003649357.1| - 0.092 12.7 0.1 0.25 11.4 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|296241870|ref|YP_003649357.1| - 0.11 12.1 0.1 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|296241870|ref|YP_003649357.1| - 0.12 11.5 0.1 0.42 9.7 0.0 1.8 1 1 1 2 2 2 0 PhoH-like protein Mg_chelatase PF01078.16 gi|296241870|ref|YP_003649357.1| - 0.13 11.4 0.0 0.21 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SMC_N PF02463.14 gi|296241870|ref|YP_003649357.1| - 0.14 11.3 0.0 0.35 10.0 0.0 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain Parvo_NS1 PF01057.12 gi|296241870|ref|YP_003649357.1| - 0.14 11.0 0.0 0.28 10.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Cdc6_C PF09079.6 gi|296241871|ref|YP_003649358.1| - 2.9e-23 81.3 0.2 1e-22 79.5 0.1 2.0 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|296241871|ref|YP_003649358.1| - 2.7e-13 50.2 0.0 9.2e-13 48.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|296241871|ref|YP_003649358.1| - 9.2e-08 32.2 0.0 4.4e-07 30.0 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|296241871|ref|YP_003649358.1| - 8.9e-05 22.3 0.1 0.00025 20.8 0.1 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|296241871|ref|YP_003649358.1| - 0.0013 18.8 0.0 0.0028 17.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|296241871|ref|YP_003649358.1| - 0.0054 16.4 0.2 0.045 13.4 0.1 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_18 PF13238.1 gi|296241871|ref|YP_003649358.1| - 0.0092 16.2 0.5 0.057 13.7 0.3 2.3 1 1 0 1 1 1 1 AAA domain DUF2075 PF09848.4 gi|296241871|ref|YP_003649358.1| - 0.012 14.6 0.0 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.12 gi|296241871|ref|YP_003649358.1| - 0.013 14.9 0.0 0.029 13.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|296241871|ref|YP_003649358.1| - 0.013 14.9 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|296241871|ref|YP_003649358.1| - 0.016 16.0 0.8 0.047 14.5 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|296241871|ref|YP_003649358.1| - 0.055 13.3 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|296241871|ref|YP_003649358.1| - 0.074 11.7 0.0 0.31 9.6 0.0 1.9 2 0 0 2 2 2 0 TIP49 C-terminus KaiC PF06745.8 gi|296241871|ref|YP_003649358.1| - 0.091 11.8 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 KaiC EF-hand_7 PF13499.1 gi|296241871|ref|YP_003649358.1| - 0.12 12.5 2.7 1.5 9.0 0.2 3.4 3 1 0 3 3 3 0 EF-hand domain pair NB-ARC PF00931.17 gi|296241871|ref|YP_003649358.1| - 0.13 11.0 0.0 0.48 9.2 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain DUF4408 PF14364.1 gi|296241872|ref|YP_003649359.1| - 0.16 11.5 0.2 0.35 10.4 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4408) CitMHS PF03600.11 gi|296241873|ref|YP_003649360.1| - 8.6e-18 64.0 32.1 8.6e-18 64.0 22.2 2.0 2 0 0 2 2 2 2 Citrate transporter RuvB_C PF05491.8 gi|296241874|ref|YP_003649361.1| - 0.085 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus 4HBT PF03061.17 gi|296241875|ref|YP_003649362.1| - 6.4e-05 22.9 0.0 9.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily zf-DBF PF07535.7 gi|296241875|ref|YP_003649362.1| - 0.057 13.1 0.1 3.4 7.3 0.1 2.3 2 0 0 2 2 2 0 DBF zinc finger Nudix_N_2 PF14803.1 gi|296241876|ref|YP_003649363.1| - 0.0084 15.7 0.5 0.17 11.5 0.0 2.3 2 0 0 2 2 2 1 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|296241876|ref|YP_003649363.1| - 0.028 13.7 4.0 0.44 9.8 0.4 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding DUF2296 PF10058.4 gi|296241876|ref|YP_003649363.1| - 0.035 13.8 0.8 1.6 8.5 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-TFIIB PF13453.1 gi|296241876|ref|YP_003649363.1| - 0.044 12.9 0.1 0.044 12.9 0.1 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger TFIIS_C PF01096.13 gi|296241876|ref|YP_003649363.1| - 0.046 13.3 0.4 6.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|296241876|ref|YP_003649363.1| - 0.059 13.1 0.1 2 8.2 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF3133 PF11331.3 gi|296241876|ref|YP_003649363.1| - 0.067 12.7 0.4 6.7 6.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) zinc_ribbon_2 PF13240.1 gi|296241876|ref|YP_003649363.1| - 0.077 12.5 2.3 3.3 7.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|296241876|ref|YP_003649363.1| - 0.21 10.8 1.6 5.2 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|296241876|ref|YP_003649363.1| - 0.22 11.0 4.0 3.6 7.1 0.6 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ADK_lid PF05191.9 gi|296241876|ref|YP_003649363.1| - 0.35 10.5 2.1 6.8 6.4 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid tRNA_NucTransf2 PF09249.6 gi|296241878|ref|YP_003649365.1| - 1.2e-37 128.2 0.0 2.1e-37 127.4 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|296241878|ref|YP_003649365.1| - 2.4e-09 37.3 0.5 9.5e-09 35.4 0.0 2.3 2 1 0 2 2 2 1 Nucleotidyltransferase domain LigT_PEase PF02834.11 gi|296241879|ref|YP_003649366.1| - 2.1e-33 114.1 0.1 1.1e-17 63.7 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|296241879|ref|YP_003649366.1| - 7.7e-14 51.6 0.0 9.1e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|296241879|ref|YP_003649366.1| - 6.9e-13 48.7 0.0 1.3e-12 47.8 0.0 1.3 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain AAA_18 PF13238.1 gi|296241880|ref|YP_003649367.1| - 1.3e-11 44.8 0.1 2e-11 44.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|296241880|ref|YP_003649367.1| - 1.3e-09 38.8 0.2 2.4e-09 38.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|296241880|ref|YP_003649367.1| - 3.9e-07 30.0 0.0 6e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|296241880|ref|YP_003649367.1| - 0.0048 16.6 0.9 0.015 15.0 0.3 2.1 2 1 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|296241880|ref|YP_003649367.1| - 0.0089 16.0 0.1 0.011 15.7 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain SKI PF01202.17 gi|296241880|ref|YP_003649367.1| - 0.016 15.0 0.3 0.03 14.1 0.2 1.5 1 1 0 1 1 1 0 Shikimate kinase AAA PF00004.24 gi|296241880|ref|YP_003649367.1| - 0.018 15.2 0.2 0.03 14.5 0.1 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|296241880|ref|YP_003649367.1| - 0.025 13.6 0.2 0.046 12.8 0.2 1.8 1 1 0 1 1 1 0 Zeta toxin SRP54 PF00448.17 gi|296241880|ref|YP_003649367.1| - 0.032 13.6 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DDR PF08841.5 gi|296241880|ref|YP_003649367.1| - 0.039 12.7 0.4 0.054 12.3 0.2 1.1 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain ATP_bind_2 PF03668.10 gi|296241880|ref|YP_003649367.1| - 0.078 12.0 0.2 0.1 11.6 0.1 1.4 1 1 0 1 1 1 0 P-loop ATPase protein family DUF2075 PF09848.4 gi|296241880|ref|YP_003649367.1| - 0.083 11.8 0.6 0.11 11.4 0.4 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|296241880|ref|YP_003649367.1| - 0.11 11.7 0.2 0.21 10.7 0.1 1.7 1 1 1 2 2 2 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|296241880|ref|YP_003649367.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|296241880|ref|YP_003649367.1| - 0.12 12.4 1.2 0.53 10.4 0.3 2.3 2 1 0 2 2 1 0 AAA domain RNA_binding PF01877.12 gi|296241881|ref|YP_003649368.1| - 3.3e-18 65.8 0.2 1.1e-17 64.1 0.2 1.7 1 1 0 1 1 1 1 RNA binding Lactamase_B_2 PF12706.2 gi|296241882|ref|YP_003649369.1| - 9.5e-34 116.6 0.1 1.1e-33 116.3 0.1 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|296241882|ref|YP_003649369.1| - 1.1e-15 57.8 0.0 1.6e-15 57.3 0.0 1.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|296241882|ref|YP_003649369.1| - 7.7e-10 38.1 0.0 1.6e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease UPF0020 PF01170.13 gi|296241883|ref|YP_003649370.1| - 8.7e-26 90.5 0.0 1.3e-25 90.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|296241883|ref|YP_003649370.1| - 3.4e-12 46.4 0.0 5.1e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|296241883|ref|YP_003649370.1| - 7.4e-10 38.7 0.0 8.7e-07 28.6 0.0 2.6 2 1 1 3 3 3 2 DNA methylase Met_10 PF02475.11 gi|296241883|ref|YP_003649370.1| - 0.035 13.6 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|296241883|ref|YP_003649370.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Pribosyltran_N PF13793.1 gi|296241884|ref|YP_003649371.1| - 2.1e-21 75.8 0.0 2e-20 72.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|296241884|ref|YP_003649371.1| - 1.1e-11 44.5 0.6 1.1e-11 44.5 0.4 2.5 3 1 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|296241884|ref|YP_003649371.1| - 4.7e-10 39.5 2.5 9.3e-10 38.5 1.1 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|296241884|ref|YP_003649371.1| - 0.0062 15.7 0.0 0.012 14.8 0.0 1.5 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|296241884|ref|YP_003649371.1| - 0.053 12.8 0.0 0.09 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase Radical_SAM PF04055.16 gi|296241885|ref|YP_003649372.1| - 1.5e-20 74.0 0.0 3.7e-20 72.7 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|296241885|ref|YP_003649372.1| - 0.00049 20.2 0.9 0.00069 19.7 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|296241885|ref|YP_003649372.1| - 0.058 13.4 0.9 0.1 12.6 0.0 1.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain zf-U1 PF06220.7 gi|296241885|ref|YP_003649372.1| - 0.087 12.4 1.1 0.28 10.7 0.8 1.8 1 0 0 1 1 1 0 U1 zinc finger zf-C4_Topoisom PF01396.14 gi|296241885|ref|YP_003649372.1| - 0.14 11.6 0.1 0.14 11.6 0.0 3.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.11 gi|296241885|ref|YP_003649372.1| - 0.17 11.6 3.0 0.54 9.9 1.0 2.5 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit ATP_bind_1 PF03029.12 gi|296241886|ref|YP_003649373.1| - 1.8e-59 201.1 0.0 2e-59 201.0 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|296241886|ref|YP_003649373.1| - 7.2e-08 32.0 0.0 1.2e-07 31.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|296241886|ref|YP_003649373.1| - 2.7e-05 24.9 0.0 5e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|296241886|ref|YP_003649373.1| - 4.8e-05 23.0 0.0 7.4e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|296241886|ref|YP_003649373.1| - 6.4e-05 23.2 0.0 0.00035 20.8 0.0 2.1 2 1 0 2 2 2 1 AAA domain GTP_EFTU PF00009.22 gi|296241886|ref|YP_003649373.1| - 6.7e-05 22.4 0.0 0.011 15.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain SRP54 PF00448.17 gi|296241886|ref|YP_003649373.1| - 0.00031 20.2 0.0 0.0046 16.4 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|296241886|ref|YP_003649373.1| - 0.00034 20.3 0.0 0.0006 19.5 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B T2SE PF00437.15 gi|296241886|ref|YP_003649373.1| - 0.00067 18.6 0.0 0.0012 17.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NACHT PF05729.7 gi|296241886|ref|YP_003649373.1| - 0.00071 19.2 0.0 0.0029 17.2 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.1 gi|296241886|ref|YP_003649373.1| - 0.00089 19.2 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain PduV-EutP PF10662.4 gi|296241886|ref|YP_003649373.1| - 0.0017 17.8 0.0 0.17 11.3 0.0 2.6 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|296241886|ref|YP_003649373.1| - 0.0069 16.3 0.0 0.012 15.5 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|296241886|ref|YP_003649373.1| - 0.0091 15.4 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain cobW PF02492.14 gi|296241886|ref|YP_003649373.1| - 0.012 15.0 0.0 0.075 12.4 0.0 2.0 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.4 gi|296241886|ref|YP_003649373.1| - 0.024 13.6 0.0 0.049 12.5 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|296241886|ref|YP_003649373.1| - 0.025 14.7 0.0 0.062 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|296241886|ref|YP_003649373.1| - 0.029 14.0 0.0 0.093 12.4 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.1 gi|296241886|ref|YP_003649373.1| - 0.032 14.1 0.1 0.066 13.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain MipZ PF09140.6 gi|296241886|ref|YP_003649373.1| - 0.042 12.9 0.1 0.12 11.4 0.0 1.7 1 1 0 1 1 1 0 ATPase MipZ KTI12 PF08433.5 gi|296241886|ref|YP_003649373.1| - 0.053 12.7 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|296241886|ref|YP_003649373.1| - 0.056 12.6 0.0 1.3 8.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ABC_tran PF00005.22 gi|296241886|ref|YP_003649373.1| - 0.068 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter ArgK PF03308.11 gi|296241886|ref|YP_003649373.1| - 0.094 11.4 0.0 0.18 10.5 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Viral_helicase1 PF01443.13 gi|296241886|ref|YP_003649373.1| - 0.097 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|296241886|ref|YP_003649373.1| - 0.1 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|296241886|ref|YP_003649373.1| - 0.11 12.7 0.0 0.32 11.1 0.0 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|296241886|ref|YP_003649373.1| - 0.11 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|296241886|ref|YP_003649373.1| - 0.12 10.9 0.0 0.22 10.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.1 gi|296241886|ref|YP_003649373.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|296241886|ref|YP_003649373.1| - 0.14 11.9 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF87 PIF1 PF05970.9 gi|296241886|ref|YP_003649373.1| - 0.14 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase AAA_14 PF13173.1 gi|296241886|ref|YP_003649373.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|296241886|ref|YP_003649373.1| - 0.15 11.6 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Myosin_head PF00063.16 gi|296241886|ref|YP_003649373.1| - 0.16 9.9 0.0 0.22 9.4 0.0 1.1 1 0 0 1 1 1 0 Myosin head (motor domain) Succ_CoA_lig PF13607.1 gi|296241887|ref|YP_003649374.1| - 1.1e-46 157.8 1.1 8.6e-46 154.9 0.3 2.6 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|296241887|ref|YP_003649374.1| - 5e-31 107.2 0.1 4e-29 101.1 0.0 3.0 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.14 gi|296241887|ref|YP_003649374.1| - 3.4e-17 62.7 0.1 6e-16 58.7 0.0 2.5 2 0 0 2 2 2 1 CoA binding domain PA PF02225.17 gi|296241887|ref|YP_003649374.1| - 0.0015 18.1 0.0 2.5 7.8 0.0 3.4 2 1 0 2 2 2 2 PA domain NAD_Gly3P_dh_N PF01210.18 gi|296241887|ref|YP_003649374.1| - 0.014 15.1 0.0 0.11 12.2 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Ferrochelatase PF00762.14 gi|296241887|ref|YP_003649374.1| - 0.03 13.3 0.0 0.054 12.4 0.0 1.3 1 0 0 1 1 1 0 Ferrochelatase F420_oxidored PF03807.12 gi|296241887|ref|YP_003649374.1| - 0.11 12.8 0.6 6 7.3 0.1 3.8 4 1 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent ATP-grasp_5 PF13549.1 gi|296241888|ref|YP_003649375.1| - 1.9e-82 275.8 0.2 2.1e-82 275.6 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|296241888|ref|YP_003649375.1| - 2.5e-06 27.0 0.2 3.5e-06 26.5 0.2 1.5 1 1 0 1 1 1 1 ATP-grasp domain TPR_MLP1_2 PF07926.7 gi|296241889|ref|YP_003649376.1| - 6.6e-05 22.6 41.8 9.3e-05 22.1 11.6 3.1 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein Reo_sigmaC PF04582.7 gi|296241889|ref|YP_003649376.1| - 0.00011 21.4 10.2 0.087 11.9 0.2 2.5 1 1 1 2 2 2 2 Reovirus sigma C capsid protein DUF948 PF06103.6 gi|296241889|ref|YP_003649376.1| - 0.00015 21.5 15.2 0.0096 15.7 1.6 4.1 2 1 1 4 4 4 2 Bacterial protein of unknown function (DUF948) APG6 PF04111.7 gi|296241889|ref|YP_003649376.1| - 0.00021 20.4 44.5 0.0098 14.9 9.7 3.0 1 1 2 3 3 3 2 Autophagy protein Apg6 Atg14 PF10186.4 gi|296241889|ref|YP_003649376.1| - 0.0018 17.2 21.0 0.0018 17.2 14.6 3.0 1 1 2 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|296241889|ref|YP_003649376.1| - 0.0024 18.2 42.8 0.065 13.5 4.9 5.0 1 1 5 6 6 5 4 Protein of unknown function (DUF972) GAS PF13851.1 gi|296241889|ref|YP_003649376.1| - 0.0066 15.6 51.6 0.077 12.1 12.6 2.9 1 1 2 3 3 3 3 Growth-arrest specific micro-tubule binding BCDHK_Adom3 PF10436.4 gi|296241889|ref|YP_003649376.1| - 0.0067 15.9 0.0 0.017 14.6 0.0 1.9 1 1 0 1 1 1 1 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase DUF4201 PF13870.1 gi|296241889|ref|YP_003649376.1| - 0.016 14.6 53.1 0.03 13.7 4.7 4.2 1 1 3 4 4 4 0 Domain of unknown function (DUF4201) TMF_DNA_bd PF12329.3 gi|296241889|ref|YP_003649376.1| - 0.021 14.6 10.2 0.021 14.6 7.1 6.2 2 2 3 5 5 4 0 TATA element modulatory factor 1 DNA binding LPP PF04728.8 gi|296241889|ref|YP_003649376.1| - 0.026 14.3 0.6 0.99 9.2 0.0 3.2 3 1 0 3 3 3 0 Lipoprotein leucine-zipper IncA PF04156.9 gi|296241889|ref|YP_003649376.1| - 0.029 13.9 53.5 0.071 12.7 16.5 3.3 1 1 2 3 3 3 0 IncA protein CENP-F_leu_zip PF10473.4 gi|296241889|ref|YP_003649376.1| - 0.034 13.9 59.0 0.032 14.0 15.4 3.9 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF342 PF03961.8 gi|296241889|ref|YP_003649376.1| - 0.061 11.7 43.4 0.62 8.4 17.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF342) Spc7 PF08317.6 gi|296241889|ref|YP_003649376.1| - 0.13 10.8 49.0 0.055 12.1 10.2 3.0 1 1 2 3 3 3 0 Spc7 kinetochore protein HOOK PF05622.7 gi|296241889|ref|YP_003649376.1| - 0.14 9.9 45.7 0.25 9.0 7.5 2.2 1 1 1 2 2 2 0 HOOK protein CCDC155 PF14662.1 gi|296241889|ref|YP_003649376.1| - 0.16 11.5 48.9 0.12 11.9 11.7 3.4 1 1 2 3 3 3 0 Coiled-coil region of CCDC155 Sec34 PF04136.10 gi|296241889|ref|YP_003649376.1| - 0.18 11.4 23.7 0.12 12.0 3.1 3.6 1 1 2 3 3 3 0 Sec34-like family NPV_P10 PF05531.7 gi|296241889|ref|YP_003649376.1| - 0.22 11.7 19.9 14 6.0 0.0 5.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein ALIX_LYPXL_bnd PF13949.1 gi|296241889|ref|YP_003649376.1| - 0.23 10.3 50.8 13 4.6 27.4 3.1 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV TBPIP PF07106.8 gi|296241889|ref|YP_003649376.1| - 0.32 10.5 49.9 0.63 9.5 2.3 4.1 1 1 4 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_13 PF13166.1 gi|296241889|ref|YP_003649376.1| - 0.36 9.2 39.1 0.21 10.0 20.1 2.3 1 1 1 2 2 2 0 AAA domain Mod_r PF07200.8 gi|296241889|ref|YP_003649376.1| - 0.36 10.7 46.0 1.3 8.9 1.3 4.2 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Syntaxin-6_N PF09177.6 gi|296241889|ref|YP_003649376.1| - 0.69 10.3 30.2 0.25 11.7 4.6 4.9 1 1 3 4 4 4 0 Syntaxin 6, N-terminal P4Ha_N PF08336.6 gi|296241889|ref|YP_003649376.1| - 0.77 9.5 28.3 1.6 8.5 0.3 4.4 2 1 1 4 4 4 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region IFT57 PF10498.4 gi|296241889|ref|YP_003649376.1| - 0.81 8.3 38.8 1 7.9 7.6 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Filament PF00038.16 gi|296241889|ref|YP_003649376.1| - 0.97 8.8 44.3 1.2 8.5 7.7 3.5 1 1 2 3 3 3 0 Intermediate filament protein Seryl_tRNA_N PF02403.17 gi|296241889|ref|YP_003649376.1| - 1 9.3 53.3 0.083 12.9 2.7 4.8 1 1 5 6 6 5 0 Seryl-tRNA synthetase N-terminal domain LOH1CR12 PF10158.4 gi|296241889|ref|YP_003649376.1| - 1.3 8.7 21.8 1 9.1 0.1 4.1 1 1 3 4 4 4 0 Tumour suppressor protein MbeD_MobD PF04899.7 gi|296241889|ref|YP_003649376.1| - 1.7 8.5 11.9 0.75 9.7 0.3 4.1 3 1 1 4 4 3 0 MbeD/MobD like DUF3584 PF12128.3 gi|296241889|ref|YP_003649376.1| - 1.8 5.7 37.8 2.6 5.2 26.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Snapin_Pallidin PF14712.1 gi|296241889|ref|YP_003649376.1| - 1.9 8.8 38.9 0.093 13.0 3.5 4.8 1 1 2 4 4 3 0 Snapin/Pallidin Cluap1 PF10234.4 gi|296241889|ref|YP_003649376.1| - 2.1 7.4 41.8 0.079 12.1 4.3 3.9 1 1 3 4 4 4 0 Clusterin-associated protein-1 DUF2935 PF11155.3 gi|296241889|ref|YP_003649376.1| - 2.9 7.9 18.1 0.16 12.0 1.9 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) MCPsignal PF00015.16 gi|296241889|ref|YP_003649376.1| - 3 7.3 16.6 0.057 12.9 2.3 2.8 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FtsQ PF03799.10 gi|296241889|ref|YP_003649376.1| - 3.4 7.8 13.4 1.8 8.7 3.2 3.6 1 1 2 4 4 4 0 Cell division protein FtsQ Mnd1 PF03962.10 gi|296241889|ref|YP_003649376.1| - 4.1 7.0 42.4 3.6 7.2 10.3 4.1 1 1 3 4 4 4 0 Mnd1 family eIF3_N PF09440.5 gi|296241889|ref|YP_003649376.1| - 4.2 7.5 26.3 1.2 9.3 2.4 4.2 1 1 1 3 3 3 0 eIF3 subunit 6 N terminal domain FlgN PF05130.7 gi|296241889|ref|YP_003649376.1| - 5.1 7.3 48.4 4.9 7.3 12.0 4.0 1 1 3 4 4 4 0 FlgN protein Syntaxin_2 PF14523.1 gi|296241889|ref|YP_003649376.1| - 5.9 6.9 38.3 0.68 9.9 1.2 4.3 1 1 3 4 4 3 0 Syntaxin-like protein DUF2968 PF11180.3 gi|296241889|ref|YP_003649376.1| - 7 5.9 31.2 4 6.7 4.2 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF2968) Laminin_II PF06009.7 gi|296241889|ref|YP_003649376.1| - 7.1 6.3 38.6 4.7 6.9 3.1 4.6 1 1 4 5 5 5 0 Laminin Domain II bZIP_1 PF00170.16 gi|296241889|ref|YP_003649376.1| - 8 6.4 58.2 0.7 9.8 1.3 7.5 2 1 8 10 10 9 0 bZIP transcription factor FlaC_arch PF05377.6 gi|296241889|ref|YP_003649376.1| - 8.1 6.4 29.9 6.5 6.7 0.2 6.3 1 1 6 7 7 7 0 Flagella accessory protein C (FlaC) DDE_Tnp_1 PF01609.16 gi|296241889|ref|YP_003649376.1| - 9.2 5.7 10.7 4.3 6.8 4.9 2.4 1 1 1 2 2 2 0 Transposase DDE domain ATG16 PF08614.6 gi|296241889|ref|YP_003649376.1| - 10 5.9 45.1 2.1 8.1 14.0 3.8 1 1 3 4 4 3 0 Autophagy protein 16 (ATG16) Prenyltransf PF01255.14 gi|296241890|ref|YP_003649377.1| - 4e-84 281.2 0.0 4.7e-84 280.9 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Ribosomal_S8e PF01201.17 gi|296241891|ref|YP_003649378.1| - 4.8e-35 120.5 1.9 5.3e-35 120.4 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.12 gi|296241892|ref|YP_003649379.1| - 1e-26 93.3 0.1 1.2e-26 93.1 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Gar1 PF04410.9 gi|296241893|ref|YP_003649380.1| - 8.5e-06 25.3 0.0 9.5e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|296241893|ref|YP_003649380.1| - 0.0038 17.0 0.3 0.012 15.4 0.0 1.8 2 0 0 2 2 2 1 PRC-barrel domain TFIIB PF00382.14 gi|296241894|ref|YP_003649381.1| - 9.9e-15 54.1 0.1 3.4e-08 33.1 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|296241894|ref|YP_003649381.1| - 5.8e-09 35.1 0.2 1.4e-08 33.9 0.2 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|296241894|ref|YP_003649381.1| - 2e-05 24.5 0.3 0.032 14.1 0.0 2.3 1 1 1 2 2 2 2 Cyclin, C-terminal domain Ribosomal_S27e PF01667.12 gi|296241894|ref|YP_003649381.1| - 0.00018 20.9 0.4 0.00033 20.1 0.3 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 Cyclin_N PF00134.18 gi|296241894|ref|YP_003649381.1| - 0.012 15.1 0.0 0.075 12.6 0.0 2.1 2 0 0 2 2 2 0 Cyclin, N-terminal domain zf-ribbon_3 PF13248.1 gi|296241894|ref|YP_003649381.1| - 0.028 13.6 0.3 0.05 12.8 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Transglut_core PF01841.14 gi|296241895|ref|YP_003649382.1| - 8.9e-12 45.2 0.0 1.7e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Transglutaminase-like superfamily Epiglycanin_C PF14654.1 gi|296241895|ref|YP_003649382.1| - 0.03 14.3 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Mucin, catalytic, TM and cytoplasmic tail region Podoplanin PF05808.6 gi|296241895|ref|YP_003649382.1| - 0.064 12.8 0.8 0.12 11.9 0.6 1.3 1 0 0 1 1 1 0 Podoplanin TrmB PF01978.14 gi|296241896|ref|YP_003649383.1| - 2.9e-05 23.7 0.4 5.8e-05 22.7 0.2 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|296241896|ref|YP_003649383.1| - 4.7e-05 22.9 0.0 6.2e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|296241896|ref|YP_003649383.1| - 7.2e-05 22.4 0.0 0.00013 21.6 0.0 1.4 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|296241896|ref|YP_003649383.1| - 8.7e-05 22.2 0.1 0.00013 21.7 0.1 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_5 PF01022.15 gi|296241896|ref|YP_003649383.1| - 0.00017 21.1 0.0 0.0003 20.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RNA_pol_Rpc34 PF05158.7 gi|296241896|ref|YP_003649383.1| - 0.001 18.3 2.7 0.11 11.6 0.1 2.1 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit HTH_27 PF13463.1 gi|296241896|ref|YP_003649383.1| - 0.0019 18.4 0.1 0.0029 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|296241896|ref|YP_003649383.1| - 0.0021 17.9 0.2 0.0032 17.3 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|296241896|ref|YP_003649383.1| - 0.0031 17.1 0.3 0.0071 15.9 0.1 1.7 2 0 0 2 2 2 1 HTH domain DUF1495 PF07381.6 gi|296241896|ref|YP_003649383.1| - 0.011 15.4 0.2 0.37 10.5 0.1 2.2 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.1 gi|296241896|ref|YP_003649383.1| - 0.02 14.2 0.4 0.14 11.5 0.3 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding EAP30 PF04157.11 gi|296241896|ref|YP_003649383.1| - 0.023 13.8 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family TFIIE_alpha PF02002.12 gi|296241896|ref|YP_003649383.1| - 0.051 13.0 1.4 0.064 12.7 0.3 1.7 2 1 0 2 2 2 0 TFIIE alpha subunit HTH_34 PF13601.1 gi|296241896|ref|YP_003649383.1| - 0.057 13.4 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Myb_DNA-bind_2 PF08914.6 gi|296241896|ref|YP_003649383.1| - 0.067 12.9 0.1 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Rap1 Myb domain Rrf2 PF02082.15 gi|296241896|ref|YP_003649383.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Trans_reg_C PF00486.23 gi|296241896|ref|YP_003649383.1| - 0.079 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal TRM PF02005.11 gi|296241897|ref|YP_003649384.1| - 6e-75 252.5 0.0 6.7e-75 252.3 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|296241897|ref|YP_003649384.1| - 3.2e-06 26.8 0.0 5e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.10 gi|296241897|ref|YP_003649384.1| - 4e-06 26.3 0.0 8.4e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_26 PF13659.1 gi|296241897|ref|YP_003649384.1| - 7e-05 22.8 0.0 0.00014 21.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|296241897|ref|YP_003649384.1| - 0.025 14.0 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase PrmA PF06325.8 gi|296241897|ref|YP_003649384.1| - 0.099 11.7 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NTPase_1 PF03266.10 gi|296241898|ref|YP_003649385.1| - 2.5e-47 160.7 0.5 3e-47 160.4 0.3 1.0 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|296241898|ref|YP_003649385.1| - 3.1e-06 27.9 0.0 9.3e-06 26.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|296241898|ref|YP_003649385.1| - 0.00053 18.8 0.3 0.00075 18.3 0.2 1.3 1 0 0 1 1 1 1 ArgK protein AAA PF00004.24 gi|296241898|ref|YP_003649385.1| - 0.00069 19.8 0.1 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|296241898|ref|YP_003649385.1| - 0.0023 17.6 0.1 0.0062 16.2 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|296241898|ref|YP_003649385.1| - 0.0025 17.8 0.1 0.0032 17.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|296241898|ref|YP_003649385.1| - 0.0029 17.7 0.2 0.005 16.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|296241898|ref|YP_003649385.1| - 0.0034 17.3 0.9 0.0064 16.4 0.6 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_18 PF13238.1 gi|296241898|ref|YP_003649385.1| - 0.0046 17.2 0.2 0.0046 17.2 0.1 2.1 3 0 0 3 3 2 1 AAA domain NACHT PF05729.7 gi|296241898|ref|YP_003649385.1| - 0.0048 16.5 0.4 0.052 13.2 0.0 2.2 2 1 0 2 2 2 1 NACHT domain AAA_5 PF07728.9 gi|296241898|ref|YP_003649385.1| - 0.0075 16.0 0.4 1.3 8.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|296241898|ref|YP_003649385.1| - 0.012 15.3 0.3 0.023 14.4 0.2 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|296241898|ref|YP_003649385.1| - 0.021 14.0 0.0 0.036 13.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|296241898|ref|YP_003649385.1| - 0.036 14.2 0.0 0.06 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DAP3 PF10236.4 gi|296241898|ref|YP_003649385.1| - 0.048 12.5 0.4 0.08 11.8 0.1 1.5 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_10 PF12846.2 gi|296241898|ref|YP_003649385.1| - 0.056 12.8 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_30 PF13604.1 gi|296241898|ref|YP_003649385.1| - 0.06 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|296241898|ref|YP_003649385.1| - 0.063 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|296241898|ref|YP_003649385.1| - 0.073 11.9 0.2 0.13 11.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|296241898|ref|YP_003649385.1| - 0.084 13.1 0.0 0.089 13.0 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_25 PF13481.1 gi|296241898|ref|YP_003649385.1| - 0.085 12.2 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|296241898|ref|YP_003649385.1| - 0.092 12.6 0.2 0.73 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|296241898|ref|YP_003649385.1| - 0.11 12.4 0.2 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|296241898|ref|YP_003649385.1| - 0.13 11.1 0.1 0.18 10.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) HTH_3 PF01381.17 gi|296241899|ref|YP_003649386.1| - 9.8e-11 41.3 0.1 2.8e-10 39.8 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|296241899|ref|YP_003649386.1| - 1.8e-07 31.0 0.1 5.9e-07 29.4 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|296241899|ref|YP_003649386.1| - 3.5e-07 30.3 0.0 7.5e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Crp PF00325.15 gi|296241899|ref|YP_003649386.1| - 0.0081 15.6 0.0 0.019 14.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family MerR PF00376.18 gi|296241899|ref|YP_003649386.1| - 0.077 12.5 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 MerR family regulatory protein Fibrillarin PF01269.12 gi|296241900|ref|YP_003649387.1| - 2.4e-100 334.1 0.1 2.8e-100 333.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|296241900|ref|YP_003649387.1| - 0.00056 19.5 0.0 0.001 18.6 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|296241900|ref|YP_003649387.1| - 0.022 14.2 0.0 0.057 12.9 0.0 1.6 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Nop PF01798.13 gi|296241901|ref|YP_003649388.1| - 2e-52 176.4 0.1 3.7e-52 175.6 0.0 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|296241901|ref|YP_003649388.1| - 1.2e-22 79.4 0.2 3.7e-22 77.8 0.1 1.9 1 0 0 1 1 1 1 NOSIC (NUC001) domain Phostensin_N PF13916.1 gi|296241901|ref|YP_003649388.1| - 0.092 12.7 1.1 1.1 9.3 0.0 2.8 3 0 0 3 3 3 0 PP1-regulatory protein, Phostensin N-terminal Ribosomal_S30 PF04758.9 gi|296241902|ref|YP_003649389.1| - 3.5e-13 49.0 1.2 3.8e-13 48.9 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Na_H_antiporter PF03553.9 gi|296241903|ref|YP_003649390.1| - 8.5e-76 254.8 21.3 8.5e-76 254.8 14.7 2.8 1 1 1 2 2 2 1 Na+/H+ antiporter family DUF2270 PF10028.4 gi|296241903|ref|YP_003649390.1| - 0.11 11.9 6.9 0.036 13.5 1.7 2.5 3 0 0 3 3 3 0 Predicted integral membrane protein (DUF2270) Asparaginase PF00710.15 gi|296241904|ref|YP_003649391.1| - 6.7e-83 278.1 0.0 8e-83 277.8 0.0 1.1 1 0 0 1 1 1 1 Asparaginase GatB_N PF02934.10 gi|296241905|ref|YP_003649392.1| - 1.3e-78 263.7 0.0 1.9e-78 263.2 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|296241905|ref|YP_003649392.1| - 2.6e-23 82.3 5.0 6.2e-23 81.1 3.4 1.7 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|296241905|ref|YP_003649392.1| - 4.1e-20 71.7 0.2 2.7e-19 69.1 0.0 2.4 2 1 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|296241905|ref|YP_003649392.1| - 0.0071 16.1 1.7 0.018 14.8 1.2 1.7 1 0 0 1 1 1 1 Yqey-like protein HTH_23 PF13384.1 gi|296241907|ref|YP_003649394.1| - 0.022 14.3 0.0 0.072 12.7 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|296241907|ref|YP_003649394.1| - 0.064 12.5 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Terminase_5 PF06056.7 gi|296241907|ref|YP_003649394.1| - 0.066 12.7 0.0 0.18 11.3 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) MarR_2 PF12802.2 gi|296241907|ref|YP_003649394.1| - 0.074 12.7 0.0 0.21 11.3 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_40 PF14493.1 gi|296241907|ref|YP_003649394.1| - 0.11 12.7 0.0 0.27 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|296241907|ref|YP_003649394.1| - 0.14 12.0 0.5 0.51 10.2 0.0 2.1 2 1 0 2 2 2 0 Helix-turn-helix Metallophos PF00149.23 gi|296241908|ref|YP_003649395.1| - 7.2e-19 67.9 0.1 9.7e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|296241908|ref|YP_003649395.1| - 1.1e-05 25.3 0.0 1.6e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain EntA_Immun PF08951.5 gi|296241909|ref|YP_003649396.1| - 0.08 13.1 0.7 0.22 11.6 0.5 1.7 1 1 0 1 1 1 0 Enterocin A Immunity Histone PF00125.19 gi|296241909|ref|YP_003649396.1| - 0.14 12.3 0.0 19 5.4 0.0 2.2 2 0 0 2 2 2 0 Core histone H2A/H2B/H3/H4 Yippee-Mis18 PF03226.9 gi|296241910|ref|YP_003649397.1| - 0.0013 18.7 0.0 0.0025 17.8 0.0 1.4 1 0 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-ribbon_3 PF13248.1 gi|296241910|ref|YP_003649397.1| - 0.015 14.4 1.0 0.026 13.7 0.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|296241910|ref|YP_003649397.1| - 0.018 14.3 0.4 0.047 13.0 0.3 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding Thioredoxin PF00085.15 gi|296241911|ref|YP_003649398.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin Cpn60_TCP1 PF00118.19 gi|296241912|ref|YP_003649399.1| - 3.1e-168 560.3 13.0 3.6e-168 560.1 9.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Med20 PF08612.6 gi|296241912|ref|YP_003649399.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 TATA-binding related factor (TRF) of subunit 20 of Mediator complex RNA_pol_Rpb6 PF01192.17 gi|296241913|ref|YP_003649400.1| - 4.4e-12 45.5 0.1 1.3e-11 44.0 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb6 Peptidase_M50 PF02163.17 gi|296241914|ref|YP_003649401.1| - 6.4e-18 64.3 5.3 3.1e-17 62.1 3.7 1.9 1 1 0 1 1 1 1 Peptidase family M50 Topoisom_bac PF01131.15 gi|296241915|ref|YP_003649402.1| - 1.4e-101 340.2 0.0 1.9e-101 339.8 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|296241915|ref|YP_003649402.1| - 8.8e-12 44.8 0.0 2.8e-11 43.2 0.0 1.9 1 0 0 1 1 1 1 Toprim domain Peptidase_S24 PF00717.18 gi|296241916|ref|YP_003649403.1| - 2.9e-08 33.2 1.6 6.7e-08 32.0 1.0 1.7 1 1 0 1 1 1 1 Peptidase S24-like Elf1 PF05129.8 gi|296241917|ref|YP_003649404.1| - 0.00017 21.2 0.1 0.00032 20.3 0.1 1.4 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|296241917|ref|YP_003649404.1| - 0.00022 20.7 2.4 0.11 12.1 0.0 2.6 2 0 0 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|296241917|ref|YP_003649404.1| - 0.00034 20.2 1.1 0.18 11.5 0.0 2.6 2 1 0 2 2 2 2 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|296241917|ref|YP_003649404.1| - 0.00038 20.0 2.3 0.15 11.7 0.0 2.5 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|296241917|ref|YP_003649404.1| - 0.00058 19.2 1.1 0.28 10.6 0.1 2.4 2 0 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit Mu-like_Com PF10122.4 gi|296241917|ref|YP_003649404.1| - 0.0015 17.5 1.2 0.082 11.9 0.0 2.3 2 0 0 2 2 2 1 Mu-like prophage protein Com Lar_restr_allev PF14354.1 gi|296241917|ref|YP_003649404.1| - 0.0019 18.4 0.3 0.0039 17.4 0.2 1.7 1 1 0 1 1 1 1 Restriction alleviation protein Lar TFIIS_C PF01096.13 gi|296241917|ref|YP_003649404.1| - 0.0026 17.3 2.7 0.91 9.2 0.3 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|296241917|ref|YP_003649404.1| - 0.0027 17.6 0.8 0.0054 16.6 0.1 1.8 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.7 gi|296241917|ref|YP_003649404.1| - 0.0046 16.2 5.3 0.017 14.4 1.6 2.8 2 1 0 2 2 2 1 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|296241917|ref|YP_003649404.1| - 0.0054 16.9 2.2 0.22 11.8 0.4 2.3 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|296241917|ref|YP_003649404.1| - 0.0065 15.6 4.0 0.31 10.3 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|296241917|ref|YP_003649404.1| - 0.0065 16.1 1.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|296241917|ref|YP_003649404.1| - 0.0093 15.4 1.5 1.7 8.1 0.1 2.5 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|296241917|ref|YP_003649404.1| - 0.011 15.7 0.8 0.11 12.4 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|296241917|ref|YP_003649404.1| - 0.013 15.5 0.3 1.2 9.2 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|296241917|ref|YP_003649404.1| - 0.014 15.0 2.8 0.27 10.9 0.1 2.4 3 0 0 3 3 2 0 Putative transposase DNA-binding domain zf-ZPR1 PF03367.8 gi|296241917|ref|YP_003649404.1| - 0.014 14.5 2.4 2.2 7.4 1.9 2.2 1 1 0 1 1 1 0 ZPR1 zinc-finger domain DUF4379 PF14311.1 gi|296241917|ref|YP_003649404.1| - 0.05 13.4 1.4 0.25 11.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) DZR PF12773.2 gi|296241917|ref|YP_003649404.1| - 0.1 12.4 1.6 0.58 10.0 1.1 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|296241917|ref|YP_003649404.1| - 0.17 11.3 2.6 3.7 7.1 0.0 2.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.1 gi|296241917|ref|YP_003649404.1| - 0.21 10.9 4.2 0.74 9.2 0.3 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Coiled PF05710.7 gi|296241917|ref|YP_003649404.1| - 0.31 11.5 2.2 11 6.5 0.3 2.2 2 0 0 2 2 2 0 Coiled coil Zn_Tnp_IS1595 PF12760.2 gi|296241917|ref|YP_003649404.1| - 0.32 10.8 3.3 7.6 6.4 2.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|296241917|ref|YP_003649404.1| - 1.7 8.3 6.7 1.2 8.8 0.1 2.9 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS PhaG_MnhG_YufB PF03334.9 gi|296241918|ref|YP_003649405.1| - 0.37 10.8 3.1 6.5 6.8 0.1 2.1 2 0 0 2 2 2 0 Na+/H+ antiporter subunit Enolase_C PF00113.17 gi|296241919|ref|YP_003649406.1| - 1.7e-117 391.6 0.0 2.3e-117 391.1 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|296241919|ref|YP_003649406.1| - 1.3e-52 177.2 0.3 2e-52 176.5 0.2 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|296241919|ref|YP_003649406.1| - 0.00011 21.1 0.0 0.00018 20.5 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|296241919|ref|YP_003649406.1| - 0.0006 20.2 0.0 0.0013 19.2 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MIG-14_Wnt-bd PF06664.7 gi|296241920|ref|YP_003649407.1| - 0.019 13.7 3.5 0.019 13.7 2.4 1.0 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion DUF1625 PF07787.7 gi|296241920|ref|YP_003649407.1| - 0.33 10.1 7.5 0.37 9.9 5.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1625) DUF1469 PF07332.6 gi|296241920|ref|YP_003649407.1| - 5.4 6.7 6.6 8.4 6.1 4.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Baculo_PEP_C PF04513.7 gi|296241921|ref|YP_003649408.1| - 0.0028 17.4 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus PRC PF05239.11 gi|296241921|ref|YP_003649408.1| - 0.013 15.3 0.1 0.013 15.3 0.0 2.6 4 0 0 4 4 4 0 PRC-barrel domain Fib_alpha PF08702.5 gi|296241921|ref|YP_003649408.1| - 0.043 13.9 1.1 1.7 8.7 1.1 2.4 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family Poty_PP PF08440.5 gi|296241921|ref|YP_003649408.1| - 0.049 12.6 0.9 0.27 10.2 0.0 1.9 1 1 1 2 2 2 0 Potyviridae polyprotein Fe_dep_repr_C PF02742.10 gi|296241921|ref|YP_003649408.1| - 0.087 12.5 0.1 1.6 8.5 0.0 2.9 3 1 1 4 4 4 0 Iron dependent repressor, metal binding and dimerisation domain Prenyltransf PF01255.14 gi|296241921|ref|YP_003649408.1| - 0.15 11.1 5.1 0.2 10.7 3.5 1.1 1 0 0 1 1 1 0 Putative undecaprenyl diphosphate synthase Syntaxin PF00804.20 gi|296241921|ref|YP_003649408.1| - 1.3 9.2 4.8 0.35 11.0 0.7 1.9 2 0 0 2 2 2 0 Syntaxin IncA PF04156.9 gi|296241921|ref|YP_003649408.1| - 4 7.0 6.5 11 5.5 4.5 1.7 1 1 0 1 1 1 0 IncA protein DUF3782 PF12644.2 gi|296241921|ref|YP_003649408.1| - 4.3 7.1 6.5 64 3.4 4.4 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) DUF904 PF06005.7 gi|296241921|ref|YP_003649408.1| - 4.6 7.5 10.3 0.77 10.0 3.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF904) MerR-DNA-bind PF09278.6 gi|296241921|ref|YP_003649408.1| - 6.3 7.2 7.1 4.7 7.6 0.1 2.9 3 0 0 3 3 3 0 MerR, DNA binding XhlA PF10779.4 gi|296241921|ref|YP_003649408.1| - 8 6.4 11.7 56 3.7 6.8 2.8 1 1 1 2 2 2 0 Haemolysin XhlA DUF3086 PF11285.3 gi|296241922|ref|YP_003649409.1| - 0.092 11.5 0.6 0.13 11.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) TBPIP PF07106.8 gi|296241922|ref|YP_003649409.1| - 0.27 10.7 6.2 7.2 6.1 0.0 3.1 2 1 1 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Exonuc_VII_S PF02609.11 gi|296241922|ref|YP_003649409.1| - 0.43 10.3 2.9 0.37 10.6 0.1 2.3 2 0 0 2 2 2 0 Exonuclease VII small subunit MCPVI PF02993.9 gi|296241922|ref|YP_003649409.1| - 1.3 9.0 4.3 2.2 8.3 3.0 1.3 1 0 0 1 1 1 0 Minor capsid protein VI AAA PF00004.24 gi|296241923|ref|YP_003649410.1| - 1.8e-32 112.3 0.1 1.3e-31 109.5 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|296241923|ref|YP_003649410.1| - 2.7e-12 46.3 1.3 8.4e-12 44.7 0.9 1.9 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_17 PF13207.1 gi|296241923|ref|YP_003649410.1| - 3.7e-05 24.5 0.8 0.00033 21.4 0.0 2.7 2 1 1 3 3 2 1 AAA domain RuvB_N PF05496.7 gi|296241923|ref|YP_003649410.1| - 0.00014 21.0 0.5 0.0014 17.7 0.0 2.6 2 1 1 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|296241923|ref|YP_003649410.1| - 0.00027 20.8 0.1 0.00085 19.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) TPR_11 PF13414.1 gi|296241923|ref|YP_003649410.1| - 0.0003 20.3 0.8 0.00057 19.4 0.5 1.5 1 0 0 1 1 1 1 TPR repeat Vps4_C PF09336.5 gi|296241923|ref|YP_003649410.1| - 0.0005 19.9 0.0 0.0011 18.8 0.0 1.6 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_22 PF13401.1 gi|296241923|ref|YP_003649410.1| - 0.00068 19.7 0.0 0.0025 17.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain TPR_1 PF00515.23 gi|296241923|ref|YP_003649410.1| - 0.00072 19.0 2.2 0.041 13.4 0.2 2.7 2 0 0 2 2 2 1 Tetratricopeptide repeat AAA_5 PF07728.9 gi|296241923|ref|YP_003649410.1| - 0.0011 18.6 0.0 0.0036 17.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|296241923|ref|YP_003649410.1| - 0.0012 19.2 3.0 0.0012 19.1 0.0 2.5 3 1 0 3 3 2 1 AAA domain Zeta_toxin PF06414.7 gi|296241923|ref|YP_003649410.1| - 0.0012 17.9 0.0 0.0036 16.4 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin Viral_helicase1 PF01443.13 gi|296241923|ref|YP_003649410.1| - 0.0013 18.3 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase Caleosin PF05042.8 gi|296241923|ref|YP_003649410.1| - 0.0017 17.9 1.1 0.48 9.9 0.1 2.5 2 0 0 2 2 2 1 Caleosin related protein TPR_2 PF07719.12 gi|296241923|ref|YP_003649410.1| - 0.0021 17.8 1.5 0.027 14.3 0.2 3.0 2 1 1 3 3 2 1 Tetratricopeptide repeat AAA_33 PF13671.1 gi|296241923|ref|YP_003649410.1| - 0.0045 16.8 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|296241923|ref|YP_003649410.1| - 0.0046 16.8 0.6 0.014 15.2 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_25 PF13481.1 gi|296241923|ref|YP_003649410.1| - 0.0046 16.3 0.1 0.75 9.1 0.0 2.4 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|296241923|ref|YP_003649410.1| - 0.0047 16.9 0.0 1.1 9.2 0.0 2.8 2 1 1 4 4 3 1 AAA ATPase domain TPR_7 PF13176.1 gi|296241923|ref|YP_003649410.1| - 0.0075 15.9 0.6 0.045 13.5 0.1 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat RNA_helicase PF00910.17 gi|296241923|ref|YP_003649410.1| - 0.011 15.9 0.1 0.083 13.0 0.0 2.5 3 0 0 3 3 3 0 RNA helicase IstB_IS21 PF01695.12 gi|296241923|ref|YP_003649410.1| - 0.015 14.7 0.0 0.04 13.3 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein ATP-synt_ab PF00006.20 gi|296241923|ref|YP_003649410.1| - 0.015 14.8 0.0 0.023 14.1 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TIP49 PF06068.8 gi|296241923|ref|YP_003649410.1| - 0.032 12.9 0.0 0.032 12.9 0.0 2.5 3 1 0 3 3 3 0 TIP49 C-terminus ResIII PF04851.10 gi|296241923|ref|YP_003649410.1| - 0.032 14.0 0.3 0.5 10.1 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_28 PF13521.1 gi|296241923|ref|YP_003649410.1| - 0.061 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Hydrolase_3 PF08282.7 gi|296241923|ref|YP_003649410.1| - 0.07 12.7 1.2 0.15 11.6 0.8 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase AAA_19 PF13245.1 gi|296241923|ref|YP_003649410.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain TPR_12 PF13424.1 gi|296241923|ref|YP_003649410.1| - 0.12 12.3 0.2 0.34 10.8 0.1 1.8 2 0 0 2 2 1 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|296241923|ref|YP_003649410.1| - 0.39 11.2 2.6 9.3 6.9 0.1 3.6 2 1 2 4 4 3 0 Tetratricopeptide repeat Sec5 PF15469.1 gi|296241923|ref|YP_003649410.1| - 0.47 10.1 3.9 2.1 8.0 0.4 2.5 2 0 0 2 2 2 0 Exocyst complex component Sec5 PAC2 PF09754.4 gi|296241924|ref|YP_003649411.1| - 1.7e-36 126.1 0.0 2.1e-36 125.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family RCC_reductase PF06405.6 gi|296241924|ref|YP_003649411.1| - 0.099 11.5 1.3 2.9 6.7 0.0 2.2 1 1 1 2 2 2 0 Red chlorophyll catabolite reductase (RCC reductase) HSP20 PF00011.16 gi|296241925|ref|YP_003649412.1| - 0.004 16.9 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family DUF4097 PF13349.1 gi|296241925|ref|YP_003649412.1| - 0.0064 16.0 0.0 0.0087 15.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4097) RNase_HII PF01351.13 gi|296241926|ref|YP_003649413.1| - 2.6e-37 128.4 0.0 3.1e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII TGS PF02824.16 gi|296241927|ref|YP_003649414.1| - 4.9e-18 64.7 0.0 1e-17 63.7 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|296241927|ref|YP_003649414.1| - 1e-15 57.7 0.1 2e-15 56.7 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|296241927|ref|YP_003649414.1| - 1.5e-09 37.3 0.0 3.6e-08 32.8 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|296241927|ref|YP_003649414.1| - 0.00023 20.6 0.1 2.4 7.5 0.0 3.3 2 1 1 3 3 3 2 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|296241927|ref|YP_003649414.1| - 0.0048 17.3 0.0 0.011 16.1 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|296241927|ref|YP_003649414.1| - 0.021 14.0 0.0 0.037 13.2 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|296241927|ref|YP_003649414.1| - 0.03 14.4 0.1 0.16 12.1 0.0 2.2 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|296241927|ref|YP_003649414.1| - 0.041 13.8 0.1 0.48 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|296241927|ref|YP_003649414.1| - 0.061 12.0 0.0 11 4.7 0.0 2.4 2 0 0 2 2 2 0 ArgK protein Dynamin_N PF00350.18 gi|296241927|ref|YP_003649414.1| - 0.091 12.5 1.0 5.6 6.7 0.1 2.7 2 1 1 3 3 3 0 Dynamin family 6PF2K PF01591.13 gi|296241927|ref|YP_003649414.1| - 0.12 11.3 0.0 0.54 9.3 0.0 2.0 2 0 0 2 2 2 0 6-phosphofructo-2-kinase PGM_PMM_I PF02878.11 gi|296241930|ref|YP_003649417.1| - 1.6e-40 137.7 0.0 4.5e-40 136.3 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|296241930|ref|YP_003649417.1| - 1.4e-22 79.9 0.0 4.8e-22 78.2 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|296241930|ref|YP_003649417.1| - 2e-21 76.1 0.0 3.7e-21 75.2 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|296241930|ref|YP_003649417.1| - 3.8e-14 52.4 0.2 9.5e-14 51.1 0.2 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain FTP PF07504.8 gi|296241930|ref|YP_003649417.1| - 0.12 11.8 0.5 5.1 6.6 0.1 2.8 3 0 0 3 3 3 0 Fungalysin/Thermolysin Propeptide Motif Trm112p PF03966.11 gi|296241931|ref|YP_003649418.1| - 2.3e-12 47.0 1.2 3.6e-12 46.4 0.8 1.3 1 0 0 1 1 1 1 Trm112p-like protein zf-C2H2_6 PF13912.1 gi|296241931|ref|YP_003649418.1| - 0.053 13.4 0.5 9.8 6.2 0.0 2.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ribbon_3 PF13248.1 gi|296241931|ref|YP_003649418.1| - 0.23 10.7 4.0 0.81 8.9 1.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|296241931|ref|YP_003649418.1| - 0.37 10.6 8.9 1.7 8.5 6.2 2.0 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|296241931|ref|YP_003649418.1| - 0.62 9.9 6.7 20 5.0 2.7 3.1 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF164 PF02591.10 gi|296241931|ref|YP_003649418.1| - 0.63 9.9 2.9 0.98 9.2 0.4 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain CK_II_beta PF01214.13 gi|296241931|ref|YP_003649418.1| - 0.71 9.3 4.0 0.6 9.5 2.0 1.5 1 1 0 1 1 1 0 Casein kinase II regulatory subunit PHD PF00628.24 gi|296241931|ref|YP_003649418.1| - 6.5 6.5 8.8 3.9 7.2 1.1 3.0 2 1 1 3 3 3 0 PHD-finger DNA_RNApol_7kD PF03604.8 gi|296241931|ref|YP_003649418.1| - 8.1 6.0 7.7 15 5.1 0.1 2.6 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF2153 PF09921.4 gi|296241932|ref|YP_003649419.1| - 1.1e-46 157.5 1.5 1.3e-46 157.2 1.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) VPR PF00522.13 gi|296241932|ref|YP_003649419.1| - 0.039 13.7 0.9 0.11 12.3 0.3 2.0 1 1 0 1 1 1 0 VPR/VPX protein PRESAN PF09687.5 gi|296241932|ref|YP_003649419.1| - 0.09 12.8 0.4 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 Plasmodium RESA N-terminal DUF3783 PF12646.2 gi|296241934|ref|YP_003649421.1| - 0.058 13.1 0.0 0.34 10.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) ER_lumen_recept PF00810.13 gi|296241934|ref|YP_003649421.1| - 0.23 11.9 3.6 0.22 12.0 0.8 2.0 1 1 1 2 2 2 0 ER lumen protein retaining receptor TIP49 PF06068.8 gi|296241935|ref|YP_003649422.1| - 9.1e-158 525.1 2.2 1.1e-157 524.8 1.5 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|296241935|ref|YP_003649422.1| - 3.1e-13 50.0 1.9 3.1e-09 37.1 0.0 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|296241935|ref|YP_003649422.1| - 1.5e-08 34.8 2.1 5e-06 26.6 0.3 2.8 2 1 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|296241935|ref|YP_003649422.1| - 2.2e-08 33.4 4.3 2.3e-06 26.8 0.0 3.3 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|296241935|ref|YP_003649422.1| - 3.5e-07 30.4 0.1 0.0027 17.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|296241935|ref|YP_003649422.1| - 1.3e-05 24.8 0.0 3.9e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|296241935|ref|YP_003649422.1| - 1.6e-05 25.2 0.0 4.2e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|296241935|ref|YP_003649422.1| - 1.7e-05 25.6 0.1 8.4e-05 23.3 0.0 2.2 2 1 0 2 2 1 1 AAA domain AAA_5 PF07728.9 gi|296241935|ref|YP_003649422.1| - 2e-05 24.3 0.2 0.00017 21.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|296241935|ref|YP_003649422.1| - 0.00013 21.4 0.1 0.00031 20.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|296241935|ref|YP_003649422.1| - 0.00024 20.5 0.1 0.00059 19.3 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|296241935|ref|YP_003649422.1| - 0.00046 19.4 0.3 0.003 16.7 0.1 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|296241935|ref|YP_003649422.1| - 0.00093 18.3 0.0 0.0029 16.7 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|296241935|ref|YP_003649422.1| - 0.0011 18.9 0.1 0.0033 17.2 0.0 2.0 2 1 0 2 2 1 1 AAA domain TFIID-31kDa PF02291.10 gi|296241935|ref|YP_003649422.1| - 0.0011 18.7 0.2 0.53 10.0 0.1 3.1 3 0 0 3 3 3 1 Transcription initiation factor IID, 31kD subunit AAA_28 PF13521.1 gi|296241935|ref|YP_003649422.1| - 0.0028 17.6 0.8 0.0079 16.1 0.0 2.1 3 0 0 3 3 1 1 AAA domain AAA_14 PF13173.1 gi|296241935|ref|YP_003649422.1| - 0.0057 16.5 0.0 1.3 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|296241935|ref|YP_003649422.1| - 0.0057 16.2 0.1 0.79 9.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain PhoH PF02562.11 gi|296241935|ref|YP_003649422.1| - 0.0079 15.4 0.1 0.019 14.1 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein NACHT PF05729.7 gi|296241935|ref|YP_003649422.1| - 0.0092 15.6 0.0 0.022 14.3 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_11 PF13086.1 gi|296241935|ref|YP_003649422.1| - 0.0096 15.5 0.0 0.015 14.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain DBI_PRT PF02277.12 gi|296241935|ref|YP_003649422.1| - 0.012 14.7 1.8 0.015 14.4 0.5 1.6 2 0 0 2 2 2 0 Phosphoribosyltransferase Sigma54_activat PF00158.21 gi|296241935|ref|YP_003649422.1| - 0.015 14.7 0.0 0.17 11.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DnaB_C PF03796.10 gi|296241935|ref|YP_003649422.1| - 0.022 13.6 0.0 0.059 12.2 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain ABC_tran PF00005.22 gi|296241935|ref|YP_003649422.1| - 0.024 14.9 0.0 0.12 12.6 0.0 1.7 1 1 0 1 1 1 0 ABC transporter KaiC PF06745.8 gi|296241935|ref|YP_003649422.1| - 0.028 13.5 0.8 0.12 11.5 0.1 2.2 2 1 1 3 3 3 0 KaiC ResIII PF04851.10 gi|296241935|ref|YP_003649422.1| - 0.033 14.0 0.1 0.18 11.6 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.17 gi|296241935|ref|YP_003649422.1| - 0.035 14.2 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|296241935|ref|YP_003649422.1| - 0.036 13.0 0.0 0.075 12.0 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_2 PF07724.9 gi|296241935|ref|YP_003649422.1| - 0.051 13.4 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) Phage_NinH PF06322.6 gi|296241935|ref|YP_003649422.1| - 0.065 12.8 0.0 0.29 10.7 0.0 2.0 2 0 0 2 2 2 0 Phage NinH protein Pyridoxal_deC PF00282.14 gi|296241936|ref|YP_003649423.1| - 4.3e-28 97.8 0.0 7.2e-28 97.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|296241936|ref|YP_003649423.1| - 2.5e-15 56.1 0.0 4.2e-14 52.0 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|296241936|ref|YP_003649423.1| - 7.4e-12 45.0 0.0 1.5e-11 44.0 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|296241936|ref|YP_003649423.1| - 2.1e-08 33.5 0.0 1.6e-06 27.3 0.0 2.1 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|296241936|ref|YP_003649423.1| - 2.2e-05 23.7 0.0 3.5e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|296241936|ref|YP_003649423.1| - 0.0022 16.5 0.0 0.0042 15.6 0.0 1.5 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain SLA_LP_auto_ag PF05889.8 gi|296241936|ref|YP_003649423.1| - 0.057 11.8 0.0 0.092 11.1 0.0 1.3 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) RIO1 PF01163.17 gi|296241937|ref|YP_003649424.1| - 5.3e-43 146.5 0.1 1e-42 145.6 0.0 1.5 2 0 0 2 2 2 1 RIO1 family Rio2_N PF09202.6 gi|296241937|ref|YP_003649424.1| - 3.5e-22 78.2 2.1 7.5e-22 77.2 1.4 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|296241937|ref|YP_003649424.1| - 7.5e-06 25.8 3.5 0.002 17.9 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|296241937|ref|YP_003649424.1| - 0.0001 21.5 0.0 0.00021 20.5 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|296241937|ref|YP_003649424.1| - 0.038 13.0 0.0 0.15 11.0 0.0 1.9 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family DUF460 PF04312.8 gi|296241938|ref|YP_003649425.1| - 1.9e-40 137.6 0.4 8e-40 135.5 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) IncA PF04156.9 gi|296241938|ref|YP_003649425.1| - 0.00065 19.3 4.6 0.00065 19.3 3.2 2.1 2 0 0 2 2 2 1 IncA protein Fib_alpha PF08702.5 gi|296241938|ref|YP_003649425.1| - 0.17 11.9 8.9 0.77 9.8 1.7 3.1 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family SlyX PF04102.7 gi|296241938|ref|YP_003649425.1| - 0.3 11.4 4.2 2.9 8.3 0.8 3.2 2 1 1 3 3 3 0 SlyX Sec2p PF06428.6 gi|296241938|ref|YP_003649425.1| - 0.38 10.6 6.1 7.7 6.4 0.8 3.0 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p Prefoldin PF02996.12 gi|296241938|ref|YP_003649425.1| - 3.8 7.1 10.5 9.8 5.8 1.2 3.6 4 0 0 4 4 4 0 Prefoldin subunit AdoMet_Synthase PF01941.14 gi|296241939|ref|YP_003649426.1| - 1e-170 567.5 0.6 1.2e-170 567.3 0.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) FbpA PF05833.6 gi|296241940|ref|YP_003649427.1| - 2.6e-38 131.7 2.0 3.8e-38 131.1 1.4 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|296241940|ref|YP_003649427.1| - 1.9e-24 85.3 0.0 3.9e-24 84.3 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) DUF1664 PF07889.7 gi|296241940|ref|YP_003649427.1| - 0.011 15.5 3.5 0.1 12.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) ALIX_LYPXL_bnd PF13949.1 gi|296241940|ref|YP_003649427.1| - 0.023 13.6 0.6 0.023 13.6 0.4 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV PAS_8 PF13188.1 gi|296241940|ref|YP_003649427.1| - 0.025 14.4 0.0 0.065 13.1 0.0 1.8 1 0 0 1 1 1 0 PAS domain SlyX PF04102.7 gi|296241940|ref|YP_003649427.1| - 0.032 14.5 1.5 0.056 13.8 0.1 2.0 2 0 0 2 2 2 0 SlyX Nup54 PF13874.1 gi|296241940|ref|YP_003649427.1| - 0.056 13.1 0.4 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Snapin_Pallidin PF14712.1 gi|296241940|ref|YP_003649427.1| - 0.083 13.2 4.2 2.4 8.5 0.2 2.8 2 0 0 2 2 2 0 Snapin/Pallidin Mod_r PF07200.8 gi|296241940|ref|YP_003649427.1| - 0.14 12.1 5.4 0.77 9.6 0.6 2.5 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein FliS PF02561.9 gi|296241940|ref|YP_003649427.1| - 0.99 9.2 5.2 0.15 11.9 0.4 2.0 2 0 0 2 2 2 0 Flagellar protein FliS Nop25 PF09805.4 gi|296241940|ref|YP_003649427.1| - 1.2 9.1 3.6 19 5.3 0.6 2.3 2 0 0 2 2 2 0 Nucleolar protein 12 (25kDa) DUF724 PF05266.9 gi|296241940|ref|YP_003649427.1| - 1.5 8.3 7.1 0.35 10.4 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) TPD52 PF04201.10 gi|296241940|ref|YP_003649427.1| - 2 8.1 4.6 0.57 9.8 0.3 2.0 2 0 0 2 2 2 0 Tumour protein D52 family RNA_Me_trans PF04252.8 gi|296241942|ref|YP_003649429.1| - 9.6e-39 132.8 0.0 1.2e-38 132.5 0.0 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase DUF91 PF01939.11 gi|296241943|ref|YP_003649430.1| - 2.4e-58 196.9 0.0 3.1e-58 196.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 Methyltransf_11 PF08241.7 gi|296241944|ref|YP_003649431.1| - 5e-15 55.7 0.0 7e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|296241944|ref|YP_003649431.1| - 9.2e-09 35.6 0.0 1.5e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|296241944|ref|YP_003649431.1| - 1.5e-08 34.0 0.0 1.7e-08 33.8 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|296241944|ref|YP_003649431.1| - 1.9e-07 30.7 0.0 2.5e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|296241944|ref|YP_003649431.1| - 3.8e-07 30.4 0.0 5.4e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|296241944|ref|YP_003649431.1| - 2.6e-06 27.9 0.0 4.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|296241944|ref|YP_003649431.1| - 8.1e-05 22.4 0.0 0.0001 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|296241944|ref|YP_003649431.1| - 0.011 14.8 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|296241944|ref|YP_003649431.1| - 0.043 13.1 0.0 0.11 11.8 0.0 1.6 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|296241944|ref|YP_003649431.1| - 0.092 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain LSM PF01423.17 gi|296241945|ref|YP_003649432.1| - 2.8e-16 58.7 0.3 3.3e-16 58.5 0.2 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|296241945|ref|YP_003649432.1| - 0.024 14.5 0.1 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain CBS PF00571.23 gi|296241946|ref|YP_003649433.1| - 5.4e-48 160.5 15.4 4.1e-16 58.4 0.2 4.1 4 0 0 4 4 4 4 CBS domain Succ_DH_flav_C PF02910.15 gi|296241946|ref|YP_003649433.1| - 0.14 11.9 1.4 10 6.0 0.0 2.9 3 0 0 3 3 3 0 Fumarate reductase flavoprotein C-term CBS PF00571.23 gi|296241947|ref|YP_003649434.1| - 2.1e-27 94.6 0.1 3.8e-07 29.7 0.0 4.3 4 0 0 4 4 4 4 CBS domain Mut7-C PF01927.11 gi|296241948|ref|YP_003649435.1| - 8.3e-47 158.8 0.1 9.8e-47 158.6 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain ADK_lid PF05191.9 gi|296241948|ref|YP_003649435.1| - 0.12 12.0 0.2 3.5 7.3 0.1 2.5 2 0 0 2 2 2 0 Adenylate kinase, active site lid AMMECR1 PF01871.12 gi|296241949|ref|YP_003649436.1| - 1.7e-52 177.0 0.0 2e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 NAD_synthase PF02540.12 gi|296241950|ref|YP_003649437.1| - 2.9e-72 242.4 0.0 3.4e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|296241950|ref|YP_003649437.1| - 1.3e-05 23.9 0.0 0.00059 18.5 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|296241950|ref|YP_003649437.1| - 0.00062 19.3 0.0 0.0009 18.8 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|296241950|ref|YP_003649437.1| - 0.0013 18.3 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|296241950|ref|YP_003649437.1| - 0.021 14.0 0.0 0.038 13.2 0.0 1.4 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DUF3892 PF13031.1 gi|296241950|ref|YP_003649437.1| - 0.11 12.9 0.0 0.27 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3892) Bactofilin PF04519.8 gi|296241951|ref|YP_003649438.1| - 0.069 13.1 0.1 0.21 11.6 0.0 1.8 2 1 0 2 2 2 0 Polymer-forming cytoskeletal Metallophos_2 PF12850.2 gi|296241952|ref|YP_003649439.1| - 2.4e-15 56.7 0.0 4.3e-15 55.8 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|296241952|ref|YP_003649439.1| - 2.7e-09 36.7 0.4 4.4e-09 36.0 0.2 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|296241952|ref|YP_003649439.1| - 1.3e-08 34.2 0.1 1.8e-06 27.3 0.0 2.7 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily AMP-binding PF00501.23 gi|296241952|ref|YP_003649439.1| - 0.015 13.7 0.1 0.022 13.1 0.0 1.1 1 0 0 1 1 1 0 AMP-binding enzyme UDPGP PF01704.13 gi|296241953|ref|YP_003649440.1| - 0.037 12.5 0.1 0.039 12.4 0.0 1.0 1 0 0 1 1 1 0 UTP--glucose-1-phosphate uridylyltransferase GtrA PF04138.9 gi|296241954|ref|YP_003649441.1| - 4.4e-16 58.8 10.7 5.9e-16 58.4 7.4 1.2 1 0 0 1 1 1 1 GtrA-like protein MIP PF00230.15 gi|296241954|ref|YP_003649441.1| - 0.021 14.2 1.7 3.4 7.0 0.2 2.1 2 0 0 2 2 2 0 Major intrinsic protein Peptidase_M50 PF02163.17 gi|296241954|ref|YP_003649441.1| - 0.47 9.3 3.2 0.46 9.4 1.1 1.8 1 1 1 2 2 2 0 Peptidase family M50 UDG PF03167.14 gi|296241955|ref|YP_003649442.1| - 2.3e-38 131.0 0.0 3e-38 130.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Lon_C PF05362.8 gi|296241956|ref|YP_003649443.1| - 0.065 12.5 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 Lon protease (S16) C-terminal proteolytic domain Transposase_22 PF02994.9 gi|296241956|ref|YP_003649443.1| - 0.11 11.0 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 L1 transposable element DNA_ligase_A_M PF01068.16 gi|296241957|ref|YP_003649444.1| - 9.3e-58 194.9 1.3 1.4e-57 194.3 0.9 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|296241957|ref|YP_003649444.1| - 5.6e-52 176.1 0.7 1e-51 175.2 0.5 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|296241957|ref|YP_003649444.1| - 1.1e-27 96.3 0.0 2.9e-27 94.8 0.0 1.8 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|296241957|ref|YP_003649444.1| - 0.019 14.6 0.4 0.62 9.7 0.0 2.6 2 0 0 2 2 2 0 DNA ligase OB-like domain FlpD PF02662.11 gi|296241957|ref|YP_003649444.1| - 0.073 12.7 0.4 0.75 9.4 0.0 2.5 1 1 1 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit MAP7 PF05672.6 gi|296241957|ref|YP_003649444.1| - 0.096 12.0 0.7 0.44 9.8 0.1 2.2 2 0 0 2 2 2 0 MAP7 (E-MAP-115) family MAS20 PF02064.10 gi|296241957|ref|YP_003649444.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 MAS20 protein import receptor ATP_bind_1 PF03029.12 gi|296241958|ref|YP_003649445.1| - 9.9e-44 149.6 0.0 1.1e-43 149.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein CbiA PF01656.18 gi|296241958|ref|YP_003649445.1| - 0.00021 20.7 0.0 0.00036 19.9 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.1 gi|296241958|ref|YP_003649445.1| - 0.0013 18.3 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|296241958|ref|YP_003649445.1| - 0.0072 15.7 0.0 0.31 10.4 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MMR_HSR1 PF01926.18 gi|296241958|ref|YP_003649445.1| - 0.018 14.9 0.0 0.042 13.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|296241958|ref|YP_003649445.1| - 0.046 13.8 0.0 0.091 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|296241958|ref|YP_003649445.1| - 0.056 12.8 0.3 2.3 7.6 0.1 2.5 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.5 gi|296241958|ref|YP_003649445.1| - 0.096 11.8 0.3 9.9 5.3 0.0 2.7 2 2 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF2070 PF09843.4 gi|296241960|ref|YP_003649447.1| - 6.9e-08 32.1 0.0 1.1e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) TBP PF00352.16 gi|296241961|ref|YP_003649448.1| - 3.1e-63 209.1 0.2 1.4e-30 104.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|296241961|ref|YP_003649448.1| - 7.7e-06 25.8 0.0 0.034 14.1 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Spore_YhaL PF14147.1 gi|296241961|ref|YP_003649448.1| - 0.011 15.1 1.6 0.16 11.4 0.1 2.9 3 0 0 3 3 3 0 Sporulation protein YhaL Cys_Met_Meta_PP PF01053.15 gi|296241962|ref|YP_003649449.1| - 0.16 10.2 0.0 0.17 10.1 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M48 PF01435.13 gi|296241963|ref|YP_003649450.1| - 9.5e-44 149.6 0.5 1.7e-43 148.8 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|296241963|ref|YP_003649450.1| - 0.00014 20.9 0.5 0.00036 19.6 0.3 1.7 1 1 0 1 1 1 1 BlaR1 peptidase M56 Rer1 PF03248.8 gi|296241963|ref|YP_003649450.1| - 9.6 5.7 9.2 5.5 6.5 1.8 2.3 1 1 1 2 2 2 0 Rer1 family Peptidase_M48 PF01435.13 gi|296241964|ref|YP_003649451.1| - 0.0031 17.1 0.0 0.0037 16.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 SprT-like PF10263.4 gi|296241964|ref|YP_003649451.1| - 0.043 13.4 0.0 0.043 13.4 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Peptidase_M56 PF05569.6 gi|296241964|ref|YP_003649451.1| - 0.12 11.3 0.2 0.16 10.8 0.1 1.1 1 0 0 1 1 1 0 BlaR1 peptidase M56 Metallophos_2 PF12850.2 gi|296241965|ref|YP_003649452.1| - 5.4e-07 29.5 0.0 1.7e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|296241965|ref|YP_003649452.1| - 0.00012 21.5 0.3 0.0015 17.9 0.2 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Hydrolase PF00702.21 gi|296241965|ref|YP_003649452.1| - 0.12 12.7 0.0 0.16 12.3 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF872 PF05915.7 gi|296241966|ref|YP_003649453.1| - 0.26 11.1 4.6 6.2 6.7 0.1 2.3 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF4405 PF14358.1 gi|296241966|ref|YP_003649453.1| - 6.5 6.9 7.3 1.7 8.8 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) TPP_enzyme_C PF02775.16 gi|296241969|ref|YP_003649456.1| - 1.7e-18 66.6 0.0 5.1e-18 65.1 0.1 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|296241969|ref|YP_003649456.1| - 4.4e-14 52.5 0.0 7.1e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|296241969|ref|YP_003649456.1| - 8.8e-12 44.0 15.0 5.3e-08 32.1 2.5 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|296241969|ref|YP_003649456.1| - 5.7e-09 35.3 13.2 0.00014 21.6 2.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|296241969|ref|YP_003649456.1| - 1.5e-08 34.9 7.9 1.4e-07 31.7 5.7 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296241969|ref|YP_003649456.1| - 2.5e-07 30.2 17.2 1.5e-05 24.6 1.7 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|296241969|ref|YP_003649456.1| - 7.1e-07 29.3 7.3 1.6e-06 28.2 5.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|296241969|ref|YP_003649456.1| - 1.2e-06 28.2 9.6 5.1e-06 26.2 6.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296241969|ref|YP_003649456.1| - 2.7e-05 23.8 11.7 3.9e-05 23.3 7.0 2.2 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296241969|ref|YP_003649456.1| - 0.00017 22.2 5.4 0.0016 19.1 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|296241969|ref|YP_003649456.1| - 0.00045 20.3 11.8 0.0082 16.4 1.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296241969|ref|YP_003649456.1| - 0.0072 16.3 9.1 0.027 14.5 6.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|296241969|ref|YP_003649456.1| - 0.025 14.4 2.4 0.049 13.5 1.7 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296241969|ref|YP_003649456.1| - 0.033 14.7 11.8 1.1 9.8 1.1 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Transketolase_C PF02780.15 gi|296241969|ref|YP_003649456.1| - 0.034 14.0 1.1 0.1 12.5 0.1 2.3 2 0 0 2 2 2 0 Transketolase, C-terminal domain Fer4_18 PF13746.1 gi|296241969|ref|YP_003649456.1| - 0.079 13.3 6.9 1.2 9.5 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain IF-2B PF01008.12 gi|296241969|ref|YP_003649456.1| - 0.096 11.6 0.0 0.2 10.6 0.0 1.4 1 0 0 1 1 1 0 Initiation factor 2 subunit family Fer4_13 PF13370.1 gi|296241969|ref|YP_003649456.1| - 0.18 12.2 10.0 3.2 8.2 1.4 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|296241969|ref|YP_003649456.1| - 0.22 11.8 9.8 0.64 10.4 0.9 2.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain POR PF01558.13 gi|296241970|ref|YP_003649457.1| - 1.8e-31 109.3 0.1 2.1e-31 109.1 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF904 PF06005.7 gi|296241971|ref|YP_003649458.1| - 0.027 14.7 0.3 0.053 13.8 0.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF904) DUF342 PF03961.8 gi|296241972|ref|YP_003649459.1| - 0.17 10.2 0.7 0.32 9.3 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) DUF2419 PF10343.4 gi|296241973|ref|YP_003649460.1| - 0.0016 17.7 0.0 0.0038 16.5 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF2419) YozD PF14162.1 gi|296241974|ref|YP_003649461.1| - 0.078 13.0 0.2 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 YozD-like protein DUF3596 PF12167.3 gi|296241974|ref|YP_003649461.1| - 0.096 12.2 0.2 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3596) Methyltransf_26 PF13659.1 gi|296241975|ref|YP_003649462.1| - 8.7e-15 54.7 0.0 1.4e-14 54.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|296241975|ref|YP_003649462.1| - 5.5e-07 30.1 0.0 9.9e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|296241975|ref|YP_003649462.1| - 3.1e-06 26.7 0.0 4.6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Spermine_synth PF01564.12 gi|296241975|ref|YP_003649462.1| - 1e-05 24.5 0.0 1.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase MTS PF05175.9 gi|296241975|ref|YP_003649462.1| - 4.1e-05 23.0 0.0 6.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|296241975|ref|YP_003649462.1| - 0.00037 20.0 0.0 0.0012 18.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|296241975|ref|YP_003649462.1| - 0.00045 19.4 0.0 0.012 14.7 0.0 2.5 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family PrmA PF06325.8 gi|296241975|ref|YP_003649462.1| - 0.0007 18.8 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|296241975|ref|YP_003649462.1| - 0.0023 18.3 0.0 0.011 16.2 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.11 gi|296241975|ref|YP_003649462.1| - 0.0029 17.2 0.0 0.0058 16.2 0.0 1.5 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_15 PF09445.5 gi|296241975|ref|YP_003649462.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_30 PF05430.6 gi|296241975|ref|YP_003649462.1| - 0.059 13.0 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.10 gi|296241975|ref|YP_003649462.1| - 0.08 12.5 0.0 0.18 11.3 0.0 1.5 2 0 0 2 2 2 0 Hypothetical methyltransferase RHH_3 PF12651.2 gi|296241976|ref|YP_003649463.1| - 0.0043 16.7 0.0 0.007 16.0 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|296241976|ref|YP_003649463.1| - 0.019 14.8 0.1 0.079 12.8 0.0 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family ABC-3 PF00950.12 gi|296241977|ref|YP_003649464.1| - 6.2e-23 81.4 26.9 7.7e-23 81.1 18.6 1.1 1 0 0 1 1 1 1 ABC 3 transport family Gram_pos_anchor PF00746.16 gi|296241977|ref|YP_003649464.1| - 1.8 8.4 0.0 1.8 8.4 0.0 4.8 6 0 0 6 6 6 0 Gram positive anchor TroA PF01297.12 gi|296241978|ref|YP_003649465.1| - 1.2e-16 60.8 0.0 1.8e-16 60.2 0.0 1.3 1 1 0 1 1 1 1 Periplasmic solute binding protein family EpuA PF11772.3 gi|296241978|ref|YP_003649465.1| - 0.11 11.9 0.4 0.29 10.6 0.3 1.6 1 0 0 1 1 1 0 DNA-directed RNA polymerase subunit beta ABC_tran PF00005.22 gi|296241979|ref|YP_003649466.1| - 1.3e-26 93.4 0.0 1.7e-26 93.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296241979|ref|YP_003649466.1| - 1.6e-12 47.9 2.4 1.2e-06 28.6 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|296241979|ref|YP_003649466.1| - 2.4e-05 24.7 1.5 3.6e-05 24.1 1.1 1.5 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|296241979|ref|YP_003649466.1| - 2.8e-05 23.4 0.2 0.00015 21.1 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|296241979|ref|YP_003649466.1| - 0.00069 18.7 0.1 0.55 9.2 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|296241979|ref|YP_003649466.1| - 0.0026 17.2 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain SbcCD_C PF13558.1 gi|296241979|ref|YP_003649466.1| - 0.0027 17.5 0.1 0.14 12.1 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|296241979|ref|YP_003649466.1| - 0.0073 15.8 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|296241979|ref|YP_003649466.1| - 0.016 14.9 0.1 0.039 13.6 0.1 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|296241979|ref|YP_003649466.1| - 0.044 13.6 0.0 0.14 12.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|296241979|ref|YP_003649466.1| - 0.044 12.8 0.0 0.065 12.3 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin T2SE PF00437.15 gi|296241979|ref|YP_003649466.1| - 0.1 11.4 0.2 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|296241979|ref|YP_003649466.1| - 0.14 12.3 0.2 0.24 11.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|296241979|ref|YP_003649466.1| - 0.17 11.1 0.1 13 4.9 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein GARS_A PF01071.14 gi|296241980|ref|YP_003649467.1| - 0.03 13.8 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MPP6 PF10175.4 gi|296241980|ref|YP_003649467.1| - 0.031 14.6 0.0 0.051 13.9 0.0 1.4 1 0 0 1 1 1 0 M-phase phosphoprotein 6 Ald_Xan_dh_C2 PF02738.13 gi|296241981|ref|YP_003649468.1| - 5.4e-150 500.3 0.1 7.1e-150 499.9 0.1 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|296241981|ref|YP_003649468.1| - 5.1e-29 100.5 0.0 1e-28 99.6 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.15 gi|296241982|ref|YP_003649469.1| - 1e-27 95.8 0.0 1.6e-27 95.1 0.0 1.3 1 0 0 1 1 1 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|296241982|ref|YP_003649469.1| - 1.1e-08 34.6 0.5 3.8e-08 32.9 0.1 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|296241982|ref|YP_003649469.1| - 3.6e-05 23.5 0.4 7e-05 22.6 0.1 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|296241982|ref|YP_003649469.1| - 0.0002 21.0 0.4 0.0023 17.7 0.3 2.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain S4 PF01479.20 gi|296241982|ref|YP_003649469.1| - 0.1 12.0 0.7 0.98 8.9 0.0 2.6 3 0 0 3 3 3 0 S4 domain FAD_binding_5 PF00941.16 gi|296241983|ref|YP_003649470.1| - 8.7e-26 90.3 0.0 1.2e-25 89.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|296241983|ref|YP_003649470.1| - 1.7e-15 56.7 0.0 3.8e-15 55.6 0.0 1.5 1 1 1 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain Lip_prot_lig_C PF10437.4 gi|296241983|ref|YP_003649470.1| - 0.01 15.4 0.0 0.044 13.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus PALP PF00291.20 gi|296241984|ref|YP_003649471.1| - 2.4e-65 220.7 0.0 2.7e-65 220.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ABM PF03992.11 gi|296241984|ref|YP_003649471.1| - 0.073 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase MFS_1 PF07690.11 gi|296241985|ref|YP_003649472.1| - 1.5e-13 50.2 24.0 2e-10 39.9 7.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily RHD3 PF05879.7 gi|296241985|ref|YP_003649472.1| - 0.0067 14.4 1.7 0.0089 14.0 1.2 1.1 1 0 0 1 1 1 1 Root hair defective 3 GTP-binding protein (RHD3) DUF650 PF04894.7 gi|296241986|ref|YP_003649473.1| - 2.6e-98 328.8 0.0 3.4e-98 328.4 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|296241986|ref|YP_003649473.1| - 6.4e-32 109.4 0.0 9.6e-32 108.8 0.0 1.3 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Radical_SAM PF04055.16 gi|296241987|ref|YP_003649474.1| - 5.2e-12 46.2 0.0 7.1e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|296241987|ref|YP_003649474.1| - 0.018 14.5 5.3 4 6.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) zf-ribbon_3 PF13248.1 gi|296241988|ref|YP_003649475.1| - 8.8e-05 21.5 2.5 0.1 11.8 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-RING_3 PF14369.1 gi|296241988|ref|YP_003649475.1| - 0.00068 19.5 1.3 0.014 15.3 0.0 2.2 2 0 0 2 2 2 1 zinc-finger TF_Zn_Ribbon PF08271.7 gi|296241988|ref|YP_003649475.1| - 0.0019 17.4 1.6 0.69 9.2 0.1 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding CpXC PF14353.1 gi|296241988|ref|YP_003649475.1| - 0.0029 17.5 0.2 0.0069 16.3 0.2 1.6 1 1 0 1 1 1 1 CpXC protein zinc_ribbon_5 PF13719.1 gi|296241988|ref|YP_003649475.1| - 0.0041 16.6 0.1 1.8 8.2 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|296241988|ref|YP_003649475.1| - 0.0063 16.1 0.1 2.8 7.6 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|296241988|ref|YP_003649475.1| - 0.0071 15.7 4.7 1.5 8.3 1.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TFIIS_C PF01096.13 gi|296241988|ref|YP_003649475.1| - 0.013 15.0 0.8 1.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|296241988|ref|YP_003649475.1| - 0.015 15.3 0.7 3.6 7.7 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2HC_2 PF13913.1 gi|296241988|ref|YP_003649475.1| - 0.026 14.1 4.9 0.21 11.2 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn_Tnp_IS1595 PF12760.2 gi|296241988|ref|YP_003649475.1| - 0.026 14.3 1.3 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|296241988|ref|YP_003649475.1| - 0.029 14.1 1.0 5.8 6.7 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.1 gi|296241988|ref|YP_003649475.1| - 0.054 13.8 1.0 43 4.5 0.1 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|296241988|ref|YP_003649475.1| - 0.076 12.7 5.4 1.2 8.8 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|296241988|ref|YP_003649475.1| - 0.11 12.3 1.5 1.1 9.1 1.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon DUF1936 PF09151.5 gi|296241988|ref|YP_003649475.1| - 0.13 11.7 1.0 3.2 7.3 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) ADK_lid PF05191.9 gi|296241988|ref|YP_003649475.1| - 0.16 11.6 1.5 5 6.8 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2_4 PF13894.1 gi|296241988|ref|YP_003649475.1| - 0.18 12.1 0.7 13 6.3 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C4_Topoisom PF01396.14 gi|296241988|ref|YP_003649475.1| - 0.22 11.0 2.5 8.2 6.0 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|296241988|ref|YP_003649475.1| - 0.24 11.3 1.6 6.5 6.8 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF1610 PF07754.6 gi|296241988|ref|YP_003649475.1| - 0.25 11.4 10.7 1.3 9.2 2.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|296241988|ref|YP_003649475.1| - 0.26 10.9 1.1 11 5.7 0.2 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|296241988|ref|YP_003649475.1| - 0.31 10.6 3.8 6.7 6.3 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF164 PF02591.10 gi|296241988|ref|YP_003649475.1| - 0.36 10.6 2.6 2.5 7.9 0.1 2.2 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-CCHC_5 PF14787.1 gi|296241988|ref|YP_003649475.1| - 0.45 10.0 0.1 0.45 10.0 0.1 2.3 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-CCHC PF00098.18 gi|296241988|ref|YP_003649475.1| - 1.2 9.1 4.7 14 5.8 0.6 2.3 2 0 0 2 2 2 0 Zinc knuckle zf-tcix PF14952.1 gi|296241988|ref|YP_003649475.1| - 1.3 8.4 4.8 4.6 6.6 0.5 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Acetyltransf_1 PF00583.19 gi|296241989|ref|YP_003649476.1| - 3.1e-18 65.5 0.0 4.5e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|296241989|ref|YP_003649476.1| - 2.7e-11 43.4 0.0 4.2e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|296241989|ref|YP_003649476.1| - 1.2e-10 41.5 0.0 1.5e-10 41.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|296241989|ref|YP_003649476.1| - 5.7e-08 32.8 0.0 7.6e-08 32.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|296241989|ref|YP_003649476.1| - 8.4e-07 28.9 0.0 1.1e-06 28.6 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|296241989|ref|YP_003649476.1| - 2.3e-05 24.0 0.0 3.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|296241989|ref|YP_003649476.1| - 3.7e-05 23.5 0.0 0.0002 21.1 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|296241989|ref|YP_003649476.1| - 0.0014 18.4 0.0 0.0027 17.5 0.0 1.5 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|296241989|ref|YP_003649476.1| - 0.0024 18.0 0.0 0.0027 17.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|296241989|ref|YP_003649476.1| - 0.011 15.6 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|296241989|ref|YP_003649476.1| - 0.032 13.5 0.0 0.045 13.0 0.0 1.3 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DUF1106 PF06523.6 gi|296241989|ref|YP_003649476.1| - 0.12 12.2 0.3 1.9 8.3 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF1106) ADH_N PF08240.7 gi|296241990|ref|YP_003649477.1| - 2.9e-30 104.2 0.2 4.6e-30 103.5 0.2 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|296241990|ref|YP_003649477.1| - 7.1e-12 45.0 0.2 1.1e-11 44.4 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|296241990|ref|YP_003649477.1| - 0.00031 21.6 0.0 0.00069 20.5 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|296241990|ref|YP_003649477.1| - 0.0006 19.4 0.0 0.0013 18.2 0.0 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated GFO_IDH_MocA PF01408.17 gi|296241990|ref|YP_003649477.1| - 0.0071 16.8 0.1 0.015 15.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_N PF00044.19 gi|296241990|ref|YP_003649477.1| - 0.079 12.9 1.1 1.8 8.5 0.8 2.3 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BPD_transp_2 PF02653.11 gi|296241991|ref|YP_003649478.1| - 3.5e-40 137.6 28.7 4.4e-40 137.3 19.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Gly-zipper_OmpA PF13436.1 gi|296241991|ref|YP_003649478.1| - 0.011 15.3 0.1 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain BPD_transp_2 PF02653.11 gi|296241992|ref|YP_003649479.1| - 3.7e-38 131.0 34.6 3.7e-38 131.0 24.0 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Bundlin PF05307.6 gi|296241992|ref|YP_003649479.1| - 0.0074 16.1 0.7 0.031 14.1 0.1 2.3 2 0 0 2 2 2 1 Bundlin Syndecan PF01034.15 gi|296241992|ref|YP_003649479.1| - 2.7 7.7 5.9 2.2 8.0 1.6 2.6 2 0 0 2 2 2 0 Syndecan domain ABC_tran PF00005.22 gi|296241993|ref|YP_003649480.1| - 8.5e-50 168.6 1.2 2.2e-30 105.7 0.0 2.8 3 0 0 3 3 3 2 ABC transporter AAA_21 PF13304.1 gi|296241993|ref|YP_003649480.1| - 9.8e-08 32.3 5.5 0.0051 16.8 0.1 2.7 2 1 1 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|296241993|ref|YP_003649480.1| - 0.00042 19.8 1.1 0.1 12.0 0.0 2.8 3 1 0 3 3 3 1 AAA-like domain AAA_23 PF13476.1 gi|296241993|ref|YP_003649480.1| - 0.0098 16.2 0.7 0.024 14.9 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|296241993|ref|YP_003649480.1| - 0.011 15.5 0.3 0.43 10.4 0.0 3.0 2 1 1 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|296241993|ref|YP_003649480.1| - 0.022 14.3 0.0 0.073 12.7 0.0 1.9 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|296241993|ref|YP_003649480.1| - 0.032 14.2 0.1 0.087 12.8 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|296241993|ref|YP_003649480.1| - 0.034 13.8 1.0 0.17 11.5 0.6 2.1 1 1 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|296241993|ref|YP_003649480.1| - 0.048 13.8 1.0 0.53 10.4 0.0 2.8 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|296241993|ref|YP_003649480.1| - 0.049 12.6 2.6 0.79 8.6 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|296241993|ref|YP_003649480.1| - 0.092 12.8 6.1 0.25 11.4 1.0 3.4 3 1 0 3 3 2 0 AAA domain AAA_13 PF13166.1 gi|296241993|ref|YP_003649480.1| - 0.095 11.1 0.0 0.49 8.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|296241993|ref|YP_003649480.1| - 0.11 11.7 1.4 8.3 5.5 0.0 3.0 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|296241993|ref|YP_003649480.1| - 0.11 12.0 0.0 0.3 10.6 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|296241993|ref|YP_003649480.1| - 0.12 12.5 0.0 0.38 10.9 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Bmp PF02608.9 gi|296241994|ref|YP_003649481.1| - 5.1e-82 275.0 1.0 5.9e-82 274.8 0.7 1.0 1 0 0 1 1 1 1 Basic membrane protein DUF2583 PF10762.4 gi|296241995|ref|YP_003649482.1| - 0.068 13.3 0.5 0.079 13.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2583) DUF2207 PF09972.4 gi|296241995|ref|YP_003649482.1| - 0.09 11.3 3.1 0.097 11.2 2.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) PAP2 PF01569.16 gi|296241995|ref|YP_003649482.1| - 0.16 11.6 1.3 0.18 11.4 0.9 1.0 1 0 0 1 1 1 0 PAP2 superfamily Pox_A14 PF05767.7 gi|296241995|ref|YP_003649482.1| - 0.34 10.8 2.1 0.4 10.6 1.5 1.1 1 0 0 1 1 1 0 Poxvirus virion envelope protein A14 HlyIII PF03006.15 gi|296241995|ref|YP_003649482.1| - 0.73 9.1 6.2 1.5 8.2 4.3 1.5 1 1 0 1 1 1 0 Haemolysin-III related SdpI PF13630.1 gi|296241995|ref|YP_003649482.1| - 0.76 9.5 6.6 0.94 9.2 4.6 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family SSF PF00474.12 gi|296241996|ref|YP_003649483.1| - 3.4e-21 75.3 37.3 4.6e-21 74.9 25.9 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family PALP PF00291.20 gi|296241997|ref|YP_003649484.1| - 1.2e-38 133.0 0.0 1.4e-38 132.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Mem_trans PF03547.13 gi|296241998|ref|YP_003649485.1| - 9.8e-15 53.7 24.1 1.4e-09 36.7 8.1 2.2 1 1 1 2 2 2 2 Membrane transport protein DUF4022 PF13214.1 gi|296241998|ref|YP_003649485.1| - 0.32 11.1 6.8 1.8 8.6 0.2 3.7 3 1 1 4 4 4 0 Protein of unknown function (DUF4022) PA14 PF07691.7 gi|296241999|ref|YP_003649486.1| - 1.3e-20 73.5 0.0 1.6e-20 73.2 0.0 1.1 1 0 0 1 1 1 1 PA14 domain PA14_2 PF10528.4 gi|296241999|ref|YP_003649486.1| - 0.072 13.0 0.1 4.2 7.3 0.1 2.6 1 1 0 1 1 1 0 GLEYA domain HD PF01966.17 gi|296242000|ref|YP_003649487.1| - 6.6e-05 22.9 0.7 0.00012 22.1 0.5 1.5 1 0 0 1 1 1 1 HD domain SSF PF00474.12 gi|296242001|ref|YP_003649488.1| - 6.6e-09 34.8 24.9 1.3e-08 33.9 17.2 1.6 1 1 0 1 1 1 1 Sodium:solute symporter family UPF0104 PF03706.8 gi|296242003|ref|YP_003649490.1| - 0.069 12.4 2.5 0.076 12.2 1.7 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) MarR_2 PF12802.2 gi|296242004|ref|YP_003649491.1| - 2.1e-07 30.5 0.1 5.6e-07 29.1 0.1 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|296242004|ref|YP_003649491.1| - 8.3e-06 25.0 0.1 2e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|296242004|ref|YP_003649491.1| - 4.3e-05 23.1 0.3 0.00026 20.6 0.1 2.3 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|296242004|ref|YP_003649491.1| - 0.00011 21.8 0.1 0.00046 19.8 0.1 2.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|296242004|ref|YP_003649491.1| - 0.00061 19.5 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|296242004|ref|YP_003649491.1| - 0.0045 16.8 0.0 0.017 15.0 0.0 2.0 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|296242004|ref|YP_003649491.1| - 0.0082 15.7 0.1 0.021 14.4 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|296242004|ref|YP_003649491.1| - 0.0091 16.1 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|296242004|ref|YP_003649491.1| - 0.0094 15.5 0.1 0.032 13.9 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain EAP30 PF04157.11 gi|296242004|ref|YP_003649491.1| - 0.011 14.8 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family GntR PF00392.16 gi|296242004|ref|YP_003649491.1| - 0.018 14.4 0.1 0.054 12.9 0.1 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PAX PF00292.13 gi|296242004|ref|YP_003649491.1| - 0.048 13.3 0.1 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 'Paired box' domain HTH_20 PF12840.2 gi|296242004|ref|YP_003649491.1| - 0.049 13.4 0.1 0.11 12.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TauE PF01925.14 gi|296242005|ref|YP_003649492.1| - 0.0031 17.0 12.5 0.0042 16.5 8.7 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Polysacc_synt_C PF14667.1 gi|296242005|ref|YP_003649492.1| - 0.0036 17.1 17.1 0.0049 16.6 11.9 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain ABC2_membrane PF01061.19 gi|296242005|ref|YP_003649492.1| - 0.0086 15.2 2.5 0.0086 15.2 1.8 2.1 2 0 0 2 2 2 2 ABC-2 type transporter TadE PF07811.7 gi|296242005|ref|YP_003649492.1| - 0.052 13.4 0.1 0.052 13.4 0.1 3.3 3 0 0 3 3 3 0 TadE-like protein DUF4064 PF13273.1 gi|296242005|ref|YP_003649492.1| - 1.4 9.0 10.5 0.18 11.8 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF423 PF04241.10 gi|296242005|ref|YP_003649492.1| - 1.6 8.6 7.9 0.57 10.1 2.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF423) DUF3278 PF11683.3 gi|296242005|ref|YP_003649492.1| - 2.4 8.1 14.5 5.2 7.0 1.7 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3278) SspH PF08141.7 gi|296242006|ref|YP_003649493.1| - 0.09 12.8 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Small acid-soluble spore protein H family NurA PF09376.5 gi|296242008|ref|YP_003649495.1| - 5.9e-09 35.7 0.0 7.3e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 NurA domain tRNA-synt_2 PF00152.15 gi|296242010|ref|YP_003649497.1| - 5.8e-44 150.2 0.0 1.6e-43 148.7 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class II (D, K and N) Aminotran_5 PF00266.14 gi|296242011|ref|YP_003649498.1| - 2e-130 434.8 0.0 2.3e-130 434.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|296242011|ref|YP_003649498.1| - 4.1e-11 42.5 0.1 6e-11 41.9 0.1 1.1 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|296242011|ref|YP_003649498.1| - 7.1e-07 28.6 0.0 9.5e-07 28.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|296242011|ref|YP_003649498.1| - 0.00016 20.0 0.7 0.0011 17.2 0.0 2.3 2 1 0 3 3 3 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|296242011|ref|YP_003649498.1| - 0.00063 18.5 0.2 0.0015 17.3 0.1 1.7 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase FAM195 PF14799.1 gi|296242011|ref|YP_003649498.1| - 0.035 13.9 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 FAM195 family Amidohydro_1 PF01979.15 gi|296242013|ref|YP_003649500.1| - 2.3e-51 175.4 0.3 3.4e-51 174.8 0.2 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|296242013|ref|YP_003649500.1| - 2.4e-14 54.0 0.0 4.6e-13 49.8 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|296242013|ref|YP_003649500.1| - 4.9e-13 49.0 2.0 1.5e-10 40.8 0.1 2.3 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|296242013|ref|YP_003649500.1| - 2.9e-10 39.8 0.0 9.4e-10 38.1 0.0 2.0 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|296242013|ref|YP_003649500.1| - 0.041 12.8 0.0 0.075 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase Adenine_deam_C PF13382.1 gi|296242014|ref|YP_003649501.1| - 3.3e-59 198.8 0.2 1.3e-58 196.9 0.1 1.9 2 0 0 2 2 2 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|296242014|ref|YP_003649501.1| - 1.4e-27 97.2 0.0 1.9e-26 93.5 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|296242014|ref|YP_003649501.1| - 7.8e-14 51.2 0.5 2.5e-13 49.6 0.3 1.9 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|296242014|ref|YP_003649501.1| - 1.5e-11 44.8 0.1 0.00011 22.3 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|296242014|ref|YP_003649501.1| - 1.3e-05 24.6 0.2 0.13 11.4 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family zf-ZPR1 PF03367.8 gi|296242015|ref|YP_003649502.1| - 2.8e-31 107.8 0.0 3.4e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|296242015|ref|YP_003649502.1| - 0.00025 21.2 0.1 0.00045 20.4 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|296242015|ref|YP_003649502.1| - 0.042 13.0 4.8 0.25 10.6 2.4 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|296242015|ref|YP_003649502.1| - 0.055 13.4 1.2 3 7.8 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|296242015|ref|YP_003649502.1| - 0.061 13.3 0.6 2.9 7.9 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_KTR PF14205.1 gi|296242015|ref|YP_003649502.1| - 0.24 10.8 1.0 3.2 7.2 0.0 2.9 3 0 0 3 3 3 0 Cysteine-rich KTR TF_Zn_Ribbon PF08271.7 gi|296242015|ref|YP_003649502.1| - 0.61 9.4 6.9 0.88 8.9 0.0 3.5 4 0 0 4 4 4 0 TFIIB zinc-binding Radical_SAM PF04055.16 gi|296242016|ref|YP_003649503.1| - 5.2e-16 59.2 0.0 8.3e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.6 gi|296242016|ref|YP_003649503.1| - 3.9e-05 23.3 0.7 0.018 14.5 1.1 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) SIS PF01380.17 gi|296242017|ref|YP_003649504.1| - 7.5e-18 64.4 0.0 1.3e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|296242017|ref|YP_003649504.1| - 2.1e-14 53.4 1.7 1.2e-08 34.8 0.1 2.3 1 1 1 2 2 2 2 SIS domain AlaDh_PNT_C PF01262.16 gi|296242017|ref|YP_003649504.1| - 0.029 13.9 0.1 0.1 12.1 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|296242017|ref|YP_003649504.1| - 0.039 13.0 0.5 0.61 9.2 0.1 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PRMT5 PF05185.11 gi|296242017|ref|YP_003649504.1| - 0.097 11.5 1.2 0.68 8.7 0.0 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase HxlR PF01638.12 gi|296242019|ref|YP_003649506.1| - 0.095 12.3 0.1 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 HxlR-like helix-turn-helix TcdB_toxin_midC PF12255.3 gi|296242019|ref|YP_003649506.1| - 0.16 11.6 0.0 17 5.0 0.0 2.1 2 0 0 2 2 2 0 Insecticide toxin TcdB middle/C-terminal region QueT PF06177.6 gi|296242021|ref|YP_003649508.1| - 9.7e-31 106.7 13.3 1.1e-30 106.5 9.2 1.0 1 0 0 1 1 1 1 QueT transporter DUF3816 PF12822.2 gi|296242021|ref|YP_003649508.1| - 0.016 15.1 17.0 0.022 14.6 11.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) ABC_tran PF00005.22 gi|296242022|ref|YP_003649509.1| - 4.1e-21 75.7 0.0 6e-21 75.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242022|ref|YP_003649509.1| - 7.7e-11 42.4 0.6 3.8e-05 23.8 0.4 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|296242022|ref|YP_003649509.1| - 3.4e-08 32.9 0.0 1.2e-05 24.6 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|296242022|ref|YP_003649509.1| - 1.9e-06 27.1 0.0 0.0026 16.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|296242022|ref|YP_003649509.1| - 1.4e-05 24.5 0.1 6.5e-05 22.3 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|296242022|ref|YP_003649509.1| - 8.2e-05 23.0 0.1 0.00013 22.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|296242022|ref|YP_003649509.1| - 0.001 18.3 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|296242022|ref|YP_003649509.1| - 0.0024 17.5 0.0 0.0035 17.0 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|296242022|ref|YP_003649509.1| - 0.004 16.8 0.2 0.022 14.4 0.1 2.0 2 0 0 2 2 2 1 NACHT domain AAA_25 PF13481.1 gi|296242022|ref|YP_003649509.1| - 0.0049 16.3 0.0 0.0094 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|296242022|ref|YP_003649509.1| - 0.019 14.8 0.0 0.039 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|296242022|ref|YP_003649509.1| - 0.022 14.5 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|296242022|ref|YP_003649509.1| - 0.028 13.8 0.1 0.082 12.3 0.1 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_28 PF13521.1 gi|296242022|ref|YP_003649509.1| - 0.062 13.2 0.0 0.088 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|296242022|ref|YP_003649509.1| - 0.078 11.6 0.1 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_16 PF13191.1 gi|296242022|ref|YP_003649509.1| - 0.093 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|296242022|ref|YP_003649509.1| - 0.12 12.5 0.1 0.26 11.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.1 gi|296242022|ref|YP_003649509.1| - 0.17 11.7 0.1 0.26 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|296242022|ref|YP_003649509.1| - 0.19 10.9 0.0 0.29 10.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI cobW PF02492.14 gi|296242022|ref|YP_003649509.1| - 0.2 11.0 0.8 0.29 10.5 0.2 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CbiQ PF02361.11 gi|296242023|ref|YP_003649510.1| - 0.0045 16.5 2.8 0.01 15.4 2.0 1.7 1 1 0 1 1 1 1 Cobalt transport protein Peptidase_M29 PF02073.10 gi|296242024|ref|YP_003649511.1| - 1.2e-113 379.9 0.0 1.4e-113 379.7 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4388 PF14332.1 gi|296242024|ref|YP_003649511.1| - 0.0056 16.5 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4388) Ferritin PF00210.19 gi|296242025|ref|YP_003649512.1| - 4.7e-39 133.3 4.7 5.3e-39 133.2 3.3 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|296242025|ref|YP_003649512.1| - 0.00035 20.9 4.0 0.00048 20.4 2.8 1.2 1 0 0 1 1 1 1 Rubrerythrin Lipoprotein_10 PF03202.8 gi|296242025|ref|YP_003649512.1| - 0.0057 16.6 0.3 0.013 15.5 0.2 1.6 1 0 0 1 1 1 1 Putative mycoplasma lipoprotein, C-terminal region DUF3993 PF13158.1 gi|296242025|ref|YP_003649512.1| - 0.017 14.9 0.1 0.038 13.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3993) BACK PF07707.10 gi|296242025|ref|YP_003649512.1| - 0.039 13.7 0.7 0.081 12.7 0.5 1.6 1 0 0 1 1 1 0 BTB And C-terminal Kelch DUF1987 PF09345.5 gi|296242025|ref|YP_003649512.1| - 0.62 9.8 4.8 1.3 8.8 1.4 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1987) CitG PF01874.11 gi|296242026|ref|YP_003649513.1| - 3e-53 180.7 0.0 3.6e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Oxidored_molyb PF00174.14 gi|296242027|ref|YP_003649514.1| - 1e-39 135.6 0.0 1.6e-39 135.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain P16-Arc PF04699.9 gi|296242028|ref|YP_003649515.1| - 0.056 13.4 0.1 0.069 13.1 0.1 1.1 1 0 0 1 1 1 0 ARP2/3 complex 16 kDa subunit (p16-Arc) DUF1289 PF06945.8 gi|296242028|ref|YP_003649515.1| - 0.075 12.5 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1289) OTCace PF00185.19 gi|296242029|ref|YP_003649516.1| - 1.2e-40 138.9 0.0 2.8e-40 137.7 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|296242029|ref|YP_003649516.1| - 4.8e-35 120.2 0.0 7.5e-35 119.6 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Phage_Cox PF10743.4 gi|296242029|ref|YP_003649516.1| - 0.1 12.6 0.0 0.34 10.9 0.0 1.8 2 0 0 2 2 2 0 Regulatory phage protein cox BPD_transp_1 PF00528.17 gi|296242030|ref|YP_003649517.1| - 4.8e-35 120.7 13.6 4.8e-35 120.7 9.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|296242031|ref|YP_003649518.1| - 8.8e-28 97.0 13.0 8.8e-28 97.0 9.0 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|296242031|ref|YP_003649518.1| - 0.0046 16.3 0.2 0.0046 16.3 0.1 3.0 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF347 PF03988.7 gi|296242031|ref|YP_003649518.1| - 2.4 8.0 14.1 5.8 6.8 2.4 4.1 4 0 0 4 4 4 0 Repeat of Unknown Function (DUF347) ABC_tran PF00005.22 gi|296242032|ref|YP_003649519.1| - 8.9e-26 90.8 0.0 1.2e-25 90.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|296242032|ref|YP_003649519.1| - 1.3e-14 54.2 0.0 2.1e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|296242032|ref|YP_003649519.1| - 1e-10 42.0 0.1 2.9e-08 34.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|296242032|ref|YP_003649519.1| - 0.00056 19.3 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|296242032|ref|YP_003649519.1| - 0.00077 18.7 0.0 0.002 17.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AIG1 PF04548.11 gi|296242032|ref|YP_003649519.1| - 0.0032 16.6 0.2 0.0058 15.7 0.1 1.3 1 0 0 1 1 1 1 AIG1 family AAA_16 PF13191.1 gi|296242032|ref|YP_003649519.1| - 0.014 15.3 0.3 0.04 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|296242032|ref|YP_003649519.1| - 0.024 14.7 2.1 0.37 10.9 1.5 2.1 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|296242032|ref|YP_003649519.1| - 0.034 13.3 0.0 0.22 10.6 0.0 2.2 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI DUF258 PF03193.11 gi|296242032|ref|YP_003649519.1| - 0.041 13.0 0.0 0.067 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|296242032|ref|YP_003649519.1| - 0.062 13.6 0.0 0.081 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|296242032|ref|YP_003649519.1| - 0.16 11.3 0.1 0.39 10.0 0.1 1.7 1 1 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|296242033|ref|YP_003649520.1| - 4.5e-34 117.6 0.0 6.3e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242033|ref|YP_003649520.1| - 5.7e-12 46.1 1.3 8.5e-06 25.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|296242033|ref|YP_003649520.1| - 3.5e-07 29.9 0.4 0.0054 16.2 0.1 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|296242033|ref|YP_003649520.1| - 3.8e-07 29.5 2.4 0.0056 15.7 0.8 2.1 1 1 1 2 2 2 2 AAA ATPase domain oligo_HPY PF08352.7 gi|296242033|ref|YP_003649520.1| - 0.00017 21.8 0.1 0.00034 20.9 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_5 PF07728.9 gi|296242033|ref|YP_003649520.1| - 0.00017 21.3 0.9 0.091 12.4 0.0 2.4 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) SMC_N PF02463.14 gi|296242033|ref|YP_003649520.1| - 0.0002 20.6 0.3 0.00083 18.6 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|296242033|ref|YP_003649520.1| - 0.0002 20.7 0.0 0.00037 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|296242033|ref|YP_003649520.1| - 0.00039 20.5 2.4 0.0044 17.1 1.6 2.2 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|296242033|ref|YP_003649520.1| - 0.00046 19.4 0.0 0.0028 16.8 0.0 2.1 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|296242033|ref|YP_003649520.1| - 0.00046 19.1 0.0 0.00094 18.1 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|296242033|ref|YP_003649520.1| - 0.0005 19.5 0.3 0.034 13.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|296242033|ref|YP_003649520.1| - 0.0011 18.9 0.8 0.0027 17.7 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|296242033|ref|YP_003649520.1| - 0.0018 17.7 0.0 0.0026 17.2 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family NACHT PF05729.7 gi|296242033|ref|YP_003649520.1| - 0.0026 17.4 0.6 0.0055 16.3 0.4 1.5 1 0 0 1 1 1 1 NACHT domain Miro PF08477.8 gi|296242033|ref|YP_003649520.1| - 0.0027 18.1 0.0 0.0043 17.5 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Pox_A32 PF04665.7 gi|296242033|ref|YP_003649520.1| - 0.0057 15.9 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 Poxvirus A32 protein AAA_24 PF13479.1 gi|296242033|ref|YP_003649520.1| - 0.0057 16.2 0.2 0.012 15.2 0.2 1.5 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|296242033|ref|YP_003649520.1| - 0.006 15.7 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|296242033|ref|YP_003649520.1| - 0.0065 16.1 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|296242033|ref|YP_003649520.1| - 0.0089 16.3 4.0 0.026 14.8 2.8 1.8 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|296242033|ref|YP_003649520.1| - 0.012 15.3 0.1 0.026 14.2 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|296242033|ref|YP_003649520.1| - 0.012 15.3 0.2 0.02 14.6 0.1 1.5 1 1 0 1 1 1 0 Archaeal ATPase ATP-synt_ab PF00006.20 gi|296242033|ref|YP_003649520.1| - 0.013 15.0 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain cobW PF02492.14 gi|296242033|ref|YP_003649520.1| - 0.022 14.2 0.1 0.041 13.3 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DEAD PF00270.24 gi|296242033|ref|YP_003649520.1| - 0.024 14.1 1.5 0.27 10.7 1.1 2.2 1 1 0 1 1 1 0 DEAD/DEAH box helicase GTP_EFTU PF00009.22 gi|296242033|ref|YP_003649520.1| - 0.028 13.8 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain ABC_ATPase PF09818.4 gi|296242033|ref|YP_003649520.1| - 0.032 12.8 0.9 3.5 6.0 0.0 2.4 1 1 0 2 2 2 0 Predicted ATPase of the ABC class PduV-EutP PF10662.4 gi|296242033|ref|YP_003649520.1| - 0.032 13.7 1.8 0.049 13.1 0.3 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.1 gi|296242033|ref|YP_003649520.1| - 0.065 14.0 2.1 0.14 12.9 1.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|296242033|ref|YP_003649520.1| - 0.069 13.0 0.1 0.097 12.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|296242033|ref|YP_003649520.1| - 0.073 13.0 1.0 0.13 12.2 0.2 1.8 1 1 1 2 2 2 0 50S ribosome-binding GTPase SbcCD_C PF13558.1 gi|296242033|ref|YP_003649520.1| - 0.074 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|296242033|ref|YP_003649520.1| - 0.086 12.5 0.6 0.24 11.0 0.1 2.0 2 0 0 2 2 2 0 NTPase DUF87 PF01935.12 gi|296242033|ref|YP_003649520.1| - 0.09 12.5 1.5 0.81 9.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|296242033|ref|YP_003649520.1| - 0.097 12.9 3.1 0.27 11.5 1.3 2.2 1 1 1 2 2 2 0 AAA domain G-alpha PF00503.15 gi|296242033|ref|YP_003649520.1| - 0.11 11.2 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.1 gi|296242033|ref|YP_003649520.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Septin PF00735.13 gi|296242033|ref|YP_003649520.1| - 0.36 9.8 2.1 0.24 10.3 0.2 1.5 2 0 0 2 2 1 0 Septin AAA_28 PF13521.1 gi|296242033|ref|YP_003649520.1| - 1.3 8.9 3.4 0.91 9.4 1.1 1.6 2 0 0 2 2 1 0 AAA domain tRNA-synt_2d PF01409.15 gi|296242034|ref|YP_003649521.1| - 2e-81 272.8 0.0 2.7e-81 272.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|296242034|ref|YP_003649521.1| - 1.3e-06 27.4 1.8 0.0024 16.6 0.1 3.2 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_DeoR PF08220.7 gi|296242034|ref|YP_003649521.1| - 0.0079 15.7 0.1 0.0079 15.7 0.1 2.4 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|296242034|ref|YP_003649521.1| - 0.0079 16.4 1.4 0.035 14.4 0.1 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|296242034|ref|YP_003649521.1| - 0.08 12.5 0.2 1.4 8.5 0.0 3.0 2 1 0 2 2 2 0 LexA DNA binding domain Nol1_Nop2_Fmu PF01189.12 gi|296242035|ref|YP_003649522.1| - 5.7e-21 75.1 0.0 7.7e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_18 PF12847.2 gi|296242035|ref|YP_003649522.1| - 0.00055 20.4 0.0 0.0027 18.2 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|296242035|ref|YP_003649522.1| - 0.021 14.8 0.0 0.039 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Radical_SAM PF04055.16 gi|296242036|ref|YP_003649523.1| - 1.5e-06 28.4 0.0 7.1e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|296242036|ref|YP_003649523.1| - 0.0011 19.0 0.0 0.0097 16.0 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|296242036|ref|YP_003649523.1| - 0.003 17.5 0.0 0.0074 16.3 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Na_H_Exchanger PF00999.16 gi|296242037|ref|YP_003649524.1| - 1.7e-30 105.8 48.6 2.2e-30 105.4 33.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family B5 PF03484.10 gi|296242038|ref|YP_003649525.1| - 1.2e-21 76.2 0.3 4.1e-14 52.1 0.1 2.7 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|296242038|ref|YP_003649525.1| - 7.7e-14 51.5 0.0 1.4e-13 50.6 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|296242038|ref|YP_003649525.1| - 0.021 14.0 0.0 0.05 12.7 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) DUF2172 PF09940.4 gi|296242039|ref|YP_003649526.1| - 1.4e-05 23.6 0.0 0.004 15.5 0.0 3.0 3 0 0 3 3 3 3 Domain of unknown function (DUF2172) Peptidase_M28 PF04389.12 gi|296242039|ref|YP_003649526.1| - 7.9e-05 22.4 0.0 0.069 12.8 0.0 2.4 2 0 0 2 2 2 2 Peptidase family M28 Glycos_transf_1 PF00534.15 gi|296242040|ref|YP_003649527.1| - 1.2e-10 41.1 0.0 2.3e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Phosphorylase PF00343.15 gi|296242040|ref|YP_003649527.1| - 1.9e-08 32.7 0.1 9.8e-08 30.3 0.0 2.0 2 1 1 3 3 3 1 Carbohydrate phosphorylase Glyco_trans_1_4 PF13692.1 gi|296242040|ref|YP_003649527.1| - 8.1e-06 26.0 0.0 2.7e-05 24.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Usp PF00582.21 gi|296242041|ref|YP_003649528.1| - 3.1e-22 79.2 0.6 1.7e-21 76.8 0.4 1.8 1 1 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|296242041|ref|YP_003649528.1| - 0.0002 21.1 0.0 0.0003 20.5 0.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Gp_dh_C PF02800.15 gi|296242042|ref|YP_003649529.1| - 3e-17 62.5 0.3 4.3e-17 62.0 0.2 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|296242042|ref|YP_003649529.1| - 4.6e-16 59.1 0.2 6.1e-15 55.4 0.0 2.5 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|296242042|ref|YP_003649529.1| - 3.6e-09 36.5 0.0 9.7e-09 35.2 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|296242042|ref|YP_003649529.1| - 0.0039 17.6 0.0 0.012 16.1 0.0 1.9 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|296242042|ref|YP_003649529.1| - 0.078 13.3 0.0 0.45 10.9 0.0 2.2 3 0 0 3 3 3 0 Homoserine dehydrogenase, NAD binding domain PGK PF00162.14 gi|296242043|ref|YP_003649530.1| - 8.3e-104 347.1 0.0 9.5e-104 347.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DHO_dh PF01180.16 gi|296242044|ref|YP_003649531.1| - 5.3e-32 110.9 0.1 4.8e-28 97.9 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Fer4 PF00037.22 gi|296242044|ref|YP_003649531.1| - 1.9e-14 52.5 11.3 1.1e-07 31.0 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296242044|ref|YP_003649531.1| - 2.7e-12 46.3 6.4 5.3e-12 45.4 4.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296242044|ref|YP_003649531.1| - 1.5e-11 43.5 11.2 3.1e-07 29.9 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|296242044|ref|YP_003649531.1| - 3.6e-11 42.2 11.2 1.7e-05 24.4 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|296242044|ref|YP_003649531.1| - 1.7e-10 41.1 10.2 3.4e-10 40.1 7.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242044|ref|YP_003649531.1| - 8.4e-10 38.3 19.2 1.1e-07 31.5 7.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|296242044|ref|YP_003649531.1| - 3.8e-09 36.6 9.8 7.3e-09 35.7 6.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242044|ref|YP_003649531.1| - 2.5e-06 28.1 7.1 0.0044 17.7 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|296242044|ref|YP_003649531.1| - 7.6e-06 25.8 10.9 1.7e-05 24.7 6.9 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296242044|ref|YP_003649531.1| - 2.2e-05 24.9 12.6 0.018 15.5 1.7 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain NMO PF03060.10 gi|296242044|ref|YP_003649531.1| - 7.1e-05 22.1 1.4 0.00014 21.1 1.0 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase Fer4_13 PF13370.1 gi|296242044|ref|YP_003649531.1| - 0.00011 22.5 10.8 0.02 15.2 1.1 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain FMN_dh PF01070.13 gi|296242044|ref|YP_003649531.1| - 0.00028 19.8 0.1 0.0022 16.8 0.0 2.1 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Fer4_4 PF12800.2 gi|296242044|ref|YP_003649531.1| - 0.00082 19.5 15.2 0.063 13.6 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|296242044|ref|YP_003649531.1| - 0.0042 16.9 3.4 0.0085 15.9 2.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296242044|ref|YP_003649531.1| - 0.005 17.1 12.4 0.26 11.6 1.3 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296242044|ref|YP_003649531.1| - 0.005 17.2 15.0 0.13 12.7 2.1 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|296242044|ref|YP_003649531.1| - 0.0054 17.2 19.0 0.056 14.0 3.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain His_biosynth PF00977.16 gi|296242044|ref|YP_003649531.1| - 0.015 14.5 0.1 0.04 13.1 0.0 1.7 1 0 0 1 1 1 0 Histidine biosynthesis protein IMPDH PF00478.20 gi|296242044|ref|YP_003649531.1| - 0.028 13.3 0.6 0.05 12.4 0.4 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Cren7 PF11520.3 gi|296242045|ref|YP_003649532.1| - 8.1e-29 99.0 2.5 8.9e-29 98.9 1.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 Amidohydro_1 PF01979.15 gi|296242046|ref|YP_003649533.1| - 3.6e-40 138.6 0.1 4.6e-40 138.2 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|296242046|ref|YP_003649533.1| - 6.4e-11 41.9 0.0 3.9e-10 39.3 0.0 2.4 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|296242046|ref|YP_003649533.1| - 3.5e-09 36.3 0.2 1e-07 31.5 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|296242046|ref|YP_003649533.1| - 2.4e-08 34.3 0.0 3.5e-07 30.5 0.0 2.2 2 0 0 2 2 2 1 Amidohydrolase PTE PF02126.13 gi|296242046|ref|YP_003649533.1| - 0.015 14.3 1.5 2.2 7.1 0.1 2.2 2 0 0 2 2 2 0 Phosphotriesterase family EamA PF00892.15 gi|296242047|ref|YP_003649534.1| - 4e-24 85.0 33.7 7.7e-13 48.5 10.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family AA_kinase PF00696.23 gi|296242048|ref|YP_003649535.1| - 1.7e-34 119.4 0.0 1.9e-34 119.2 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF3846 PF12957.2 gi|296242048|ref|YP_003649535.1| - 0.12 12.1 0.2 0.77 9.5 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3846) Radical_SAM PF04055.16 gi|296242049|ref|YP_003649536.1| - 4.1e-13 49.8 0.0 7.6e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|296242049|ref|YP_003649536.1| - 3.3e-12 46.4 0.0 2.3e-11 43.7 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|296242049|ref|YP_003649536.1| - 2.8e-08 33.9 0.1 6.7e-08 32.7 0.0 1.6 1 1 1 2 2 2 1 4Fe-4S single cluster domain OTCace_N PF02729.16 gi|296242051|ref|YP_003649538.1| - 1.3e-39 135.0 0.0 2.8e-39 134.0 0.0 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|296242051|ref|YP_003649538.1| - 9.2e-37 126.3 0.0 2.7e-36 124.8 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF711 PF05167.7 gi|296242052|ref|YP_003649539.1| - 4.4e-51 173.8 0.0 4.5e-45 154.0 0.0 2.0 2 0 0 2 2 2 2 Uncharacterised ACR (DUF711) OTCace PF00185.19 gi|296242053|ref|YP_003649540.1| - 1.5e-53 180.8 0.0 2.7e-53 180.0 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|296242053|ref|YP_003649540.1| - 3.4e-50 169.3 0.1 2.1e-49 166.8 0.0 1.9 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain STT3 PF02516.9 gi|296242054|ref|YP_003649541.1| - 3.9e-16 59.0 48.7 7.8e-16 58.0 33.7 1.7 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit NIT PF08376.5 gi|296242055|ref|YP_003649542.1| - 0.015 14.8 0.2 0.021 14.3 0.2 1.2 1 0 0 1 1 1 0 Nitrate and nitrite sensing LOH1CR12 PF10158.4 gi|296242055|ref|YP_003649542.1| - 0.019 14.7 0.9 0.05 13.4 0.3 2.0 1 1 1 2 2 2 0 Tumour suppressor protein V_ATPase_I PF01496.14 gi|296242055|ref|YP_003649542.1| - 0.034 12.0 0.4 0.038 11.8 0.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Baculo_PEP_C PF04513.7 gi|296242055|ref|YP_003649542.1| - 0.04 13.7 0.7 0.23 11.3 0.1 2.0 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus 4HB_MCP_1 PF12729.2 gi|296242055|ref|YP_003649542.1| - 0.05 12.9 3.8 0.072 12.4 2.6 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Mod_r PF07200.8 gi|296242055|ref|YP_003649542.1| - 0.69 9.8 6.0 2.6 7.9 0.1 2.4 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Saccharop_dh_N PF04455.7 gi|296242056|ref|YP_003649543.1| - 0.012 15.7 0.0 0.38 10.9 0.0 2.7 3 0 0 3 3 3 0 LOR/SDH bifunctional enzyme conserved region ParA PF10609.4 gi|296242057|ref|YP_003649544.1| - 8.9e-29 99.2 0.1 1.7e-28 98.2 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|296242057|ref|YP_003649544.1| - 1.2e-14 54.2 0.1 1.6e-14 53.7 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|296242057|ref|YP_003649544.1| - 1.1e-06 28.6 0.1 7.7e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|296242057|ref|YP_003649544.1| - 4e-06 26.1 0.7 1.1e-05 24.6 0.2 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|296242057|ref|YP_003649544.1| - 0.00015 21.0 0.1 0.043 12.9 0.0 2.3 2 1 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.1 gi|296242057|ref|YP_003649544.1| - 0.0012 18.5 0.4 1.1 8.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|296242057|ref|YP_003649544.1| - 0.0045 16.1 0.0 0.0075 15.3 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ Desulfoferrod_N PF06397.7 gi|296242057|ref|YP_003649544.1| - 0.0068 15.7 0.1 0.012 14.9 0.1 1.4 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain PhoH PF02562.11 gi|296242057|ref|YP_003649544.1| - 0.039 13.1 0.1 0.093 11.9 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein DUF258 PF03193.11 gi|296242057|ref|YP_003649544.1| - 0.057 12.6 0.0 0.092 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|296242057|ref|YP_003649544.1| - 0.09 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|296242057|ref|YP_003649544.1| - 0.13 11.6 0.0 0.36 10.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein APS_kinase PF01583.15 gi|296242057|ref|YP_003649544.1| - 0.13 11.8 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|296242057|ref|YP_003649544.1| - 0.15 11.1 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin GHMP_kinases_N PF00288.21 gi|296242058|ref|YP_003649545.1| - 6.4e-22 77.4 0.1 1.2e-21 76.5 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|296242058|ref|YP_003649545.1| - 5.2e-13 49.0 0.1 1.5e-12 47.5 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal RanGAP1_C PF07834.6 gi|296242058|ref|YP_003649545.1| - 0.025 14.0 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 RanGAP1 C-terminal domain CN_hydrolase PF00795.17 gi|296242060|ref|YP_003649547.1| - 1.3e-19 70.2 0.0 1.7e-19 69.8 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase ABC_tran PF00005.22 gi|296242062|ref|YP_003649549.1| - 9e-28 97.2 0.0 1.9e-27 96.2 0.0 1.5 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|296242062|ref|YP_003649549.1| - 7.8e-12 45.7 0.1 2.9e-09 37.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|296242062|ref|YP_003649549.1| - 1.5e-05 24.3 0.2 0.12 11.5 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|296242062|ref|YP_003649549.1| - 5.2e-05 22.4 0.0 0.22 10.5 0.1 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|296242062|ref|YP_003649549.1| - 6.1e-05 23.4 0.4 9.6e-05 22.7 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|296242062|ref|YP_003649549.1| - 0.0013 18.9 0.2 0.0085 16.2 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|296242062|ref|YP_003649549.1| - 0.0015 17.9 0.0 0.0029 17.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|296242062|ref|YP_003649549.1| - 0.0042 16.6 0.1 0.019 14.5 0.0 2.0 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 SbcCD_C PF13558.1 gi|296242062|ref|YP_003649549.1| - 0.033 14.0 0.0 0.18 11.7 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|296242062|ref|YP_003649549.1| - 0.051 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 AAA ATPase domain MukB PF04310.7 gi|296242062|ref|YP_003649549.1| - 0.083 12.2 0.0 12 5.1 0.0 2.1 2 0 0 2 2 2 0 MukB N-terminal AAA_19 PF13245.1 gi|296242062|ref|YP_003649549.1| - 0.083 12.6 0.3 0.18 11.5 0.2 1.7 1 1 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|296242062|ref|YP_003649549.1| - 0.089 12.4 0.1 0.15 11.7 0.1 1.7 1 1 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|296242062|ref|YP_003649549.1| - 0.11 11.6 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 T2SE PF00437.15 gi|296242062|ref|YP_003649549.1| - 0.12 11.2 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Fer4_15 PF13459.1 gi|296242064|ref|YP_003649551.1| - 3e-16 59.7 1.7 3.5e-16 59.5 1.2 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|296242064|ref|YP_003649551.1| - 5e-13 49.2 1.0 6.4e-13 48.8 0.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|296242064|ref|YP_003649551.1| - 8.3e-05 22.7 0.3 0.00013 22.1 0.2 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296242064|ref|YP_003649551.1| - 0.0022 18.3 2.7 0.17 12.2 2.5 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|296242064|ref|YP_003649551.1| - 0.0093 15.9 0.4 0.016 15.2 0.3 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242064|ref|YP_003649551.1| - 0.054 13.3 1.7 0.15 11.8 1.2 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|296242064|ref|YP_003649551.1| - 0.069 12.7 8.2 0.19 11.4 0.1 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296242064|ref|YP_003649551.1| - 0.26 11.1 3.4 5 7.0 2.5 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296242064|ref|YP_003649551.1| - 0.35 10.8 5.9 5.9 6.9 0.2 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|296242064|ref|YP_003649551.1| - 0.37 11.4 7.7 5.1 7.8 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF2624 PF11116.3 gi|296242065|ref|YP_003649552.1| - 0.0024 18.3 0.9 0.033 14.6 0.5 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2624) CbiA PF01656.18 gi|296242065|ref|YP_003649552.1| - 0.0034 16.8 0.2 0.01 15.2 0.1 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain RNase_P_p30 PF01876.11 gi|296242065|ref|YP_003649552.1| - 0.074 12.2 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 RNase P subunit p30 NTPase_I-T PF01931.13 gi|296242066|ref|YP_003649553.1| - 1.7e-37 128.7 0.0 1.9e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 DUF72 PF01904.13 gi|296242067|ref|YP_003649554.1| - 1.2e-49 169.1 0.2 1.3e-49 169.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 PBP_like PF12727.2 gi|296242068|ref|YP_003649555.1| - 3.3e-55 186.0 0.0 6.6e-55 185.0 0.0 1.5 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.12 gi|296242068|ref|YP_003649555.1| - 1.3e-46 157.9 0.0 3.9e-46 156.3 0.0 1.8 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|296242068|ref|YP_003649555.1| - 1.1e-25 89.7 0.1 2.3e-25 88.6 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|296242068|ref|YP_003649555.1| - 3.8e-10 39.5 0.0 8.4e-10 38.4 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|296242068|ref|YP_003649555.1| - 4e-05 23.3 0.0 8.6e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|296242068|ref|YP_003649555.1| - 0.02 14.2 0.0 0.095 12.0 0.0 2.0 1 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein OpuAC PF04069.7 gi|296242068|ref|YP_003649555.1| - 0.022 14.1 0.0 0.042 13.1 0.0 1.4 1 0 0 1 1 1 0 Substrate binding domain of ABC-type glycine betaine transport system DEAD PF00270.24 gi|296242069|ref|YP_003649556.1| - 1.5e-25 89.6 0.0 2.6e-25 88.8 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|296242069|ref|YP_003649556.1| - 5.4e-12 45.7 0.1 2.3e-11 43.6 0.1 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|296242069|ref|YP_003649556.1| - 2.1e-10 40.3 0.2 1.7e-09 37.3 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HHH_2 PF12826.2 gi|296242069|ref|YP_003649556.1| - 2.6e-05 24.0 0.0 0.00012 21.9 0.0 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix motif Sec63 PF02889.11 gi|296242069|ref|YP_003649556.1| - 6.9e-05 22.2 0.0 0.00023 20.4 0.0 1.8 1 1 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.10 gi|296242069|ref|YP_003649556.1| - 0.00038 20.3 0.0 0.00078 19.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|296242069|ref|YP_003649556.1| - 0.0022 17.5 0.0 0.0081 15.6 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.1 gi|296242069|ref|YP_003649556.1| - 0.016 15.1 0.0 0.042 13.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) Orexin PF02072.10 gi|296242069|ref|YP_003649556.1| - 0.017 14.9 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 Prepro-orexin HHH_8 PF14716.1 gi|296242069|ref|YP_003649556.1| - 0.053 13.7 0.0 0.27 11.4 0.0 2.2 1 1 1 2 2 2 0 Helix-hairpin-helix domain DUF3701 PF12482.3 gi|296242069|ref|YP_003649556.1| - 0.14 11.8 0.0 0.78 9.5 0.0 2.2 2 0 0 2 2 2 0 Phage integrase protein UPRTase PF14681.1 gi|296242070|ref|YP_003649557.1| - 1.7e-41 141.7 0.0 2.2e-41 141.3 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|296242070|ref|YP_003649557.1| - 4.1e-09 36.2 0.0 7e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|296242070|ref|YP_003649557.1| - 0.023 14.0 0.0 0.069 12.4 0.0 1.8 1 1 0 1 1 1 0 Phosphoribosyl transferase ParA PF10609.4 gi|296242071|ref|YP_003649558.1| - 8.8e-14 51.1 0.0 1.6e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|296242071|ref|YP_003649558.1| - 2.1e-11 43.5 0.0 2.7e-11 43.2 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|296242071|ref|YP_003649558.1| - 1e-05 25.4 0.0 3.1e-05 23.9 0.0 1.9 1 1 1 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|296242071|ref|YP_003649558.1| - 0.007 15.4 0.1 0.77 8.7 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase DUF362 PF04015.7 gi|296242071|ref|YP_003649558.1| - 0.079 12.4 0.0 0.95 8.8 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF362) AAA_26 PF13500.1 gi|296242071|ref|YP_003649558.1| - 0.31 10.6 1.3 0.68 9.5 0.3 1.8 2 0 0 2 2 2 0 AAA domain HypA PF01155.14 gi|296242072|ref|YP_003649559.1| - 1.2e-16 60.4 0.0 1.6e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|296242072|ref|YP_003649559.1| - 0.0074 15.8 1.3 0.81 9.3 0.0 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|296242072|ref|YP_003649559.1| - 0.011 15.6 0.2 0.74 9.8 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|296242072|ref|YP_003649559.1| - 0.011 15.6 0.3 0.052 13.5 0.2 1.9 1 1 0 1 1 1 0 zinc-finger DNA_RNApol_7kD PF03604.8 gi|296242072|ref|YP_003649559.1| - 0.014 14.8 0.7 1.1 8.7 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF3969 PF13108.1 gi|296242072|ref|YP_003649559.1| - 0.015 14.9 0.1 0.027 14.1 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3969) Lar_restr_allev PF14354.1 gi|296242072|ref|YP_003649559.1| - 0.03 14.6 0.6 3.9 7.8 0.1 2.1 1 1 0 2 2 2 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|296242072|ref|YP_003649559.1| - 0.06 13.3 0.3 0.61 10.1 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.7 gi|296242072|ref|YP_003649559.1| - 0.087 12.2 1.0 7.3 6.0 0.1 2.2 2 0 0 2 2 2 0 HypF finger zinc_ribbon_4 PF13717.1 gi|296242072|ref|YP_003649559.1| - 0.1 12.2 0.7 7.8 6.2 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|296242072|ref|YP_003649559.1| - 0.14 11.7 0.7 11 5.6 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|296242072|ref|YP_003649559.1| - 0.16 11.8 1.2 0.44 10.3 0.1 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Elf1 PF05129.8 gi|296242072|ref|YP_003649559.1| - 0.16 11.6 0.2 6 6.6 0.0 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|296242072|ref|YP_003649559.1| - 0.17 11.1 1.2 1.2 8.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|296242072|ref|YP_003649559.1| - 0.22 10.8 1.1 0.66 9.3 0.1 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|296242072|ref|YP_003649559.1| - 0.35 10.5 2.6 12 5.6 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HMG-CoA_red PF00368.13 gi|296242073|ref|YP_003649560.1| - 2.2e-83 279.9 5.2 2.5e-83 279.7 3.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase MFS_1 PF07690.11 gi|296242074|ref|YP_003649561.1| - 2.4e-27 95.6 40.1 5.1e-22 78.0 20.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.2 gi|296242074|ref|YP_003649561.1| - 0.015 15.1 0.7 0.015 15.1 0.5 2.8 2 1 1 3 3 3 0 MFS_1 like family Glycos_transf_4 PF00953.16 gi|296242075|ref|YP_003649562.1| - 7.9e-27 94.0 11.1 7.9e-27 94.0 7.7 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 4 ERCC4 PF02732.10 gi|296242076|ref|YP_003649563.1| - 1.3e-19 70.3 0.0 2.1e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.2 gi|296242076|ref|YP_003649563.1| - 2.4e-09 36.9 0.0 4.9e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|296242076|ref|YP_003649563.1| - 4.4e-08 33.1 0.1 1e-06 28.8 0.0 2.4 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.18 gi|296242076|ref|YP_003649563.1| - 5.5e-05 22.6 0.0 0.00015 21.2 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|296242076|ref|YP_003649563.1| - 0.02 14.3 0.6 0.11 11.9 0.1 2.3 3 0 0 3 3 3 0 Bacterial RNA polymerase, alpha chain C terminal domain BPL_LplA_LipB PF03099.14 gi|296242077|ref|YP_003649564.1| - 4.7e-12 46.0 0.0 7.7e-12 45.3 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF965 PF06135.7 gi|296242077|ref|YP_003649564.1| - 0.14 12.2 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF965) Lip_prot_lig_C PF10437.4 gi|296242078|ref|YP_003649565.1| - 4.3e-05 23.0 0.3 4.8e-05 22.9 0.2 1.1 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus NUC129 PF08157.6 gi|296242079|ref|YP_003649566.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 NUC129 domain ATP-grasp_5 PF13549.1 gi|296242080|ref|YP_003649567.1| - 3.9e-73 245.3 0.1 4.4e-73 245.1 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|296242080|ref|YP_003649567.1| - 0.002 17.9 0.0 0.0027 17.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|296242080|ref|YP_003649567.1| - 0.0021 17.4 0.0 0.0041 16.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.17 gi|296242080|ref|YP_003649567.1| - 0.013 14.8 0.0 0.028 13.7 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.14 gi|296242080|ref|YP_003649567.1| - 0.029 13.9 0.0 0.051 13.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|296242080|ref|YP_003649567.1| - 0.097 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 RimK-like ATP-grasp domain LuxE PF04443.7 gi|296242083|ref|YP_003649570.1| - 0.0001 21.1 0.0 0.0031 16.2 0.0 2.0 2 0 0 2 2 2 2 Acyl-protein synthetase, LuxE LuxC PF05893.9 gi|296242084|ref|YP_003649571.1| - 8.8e-37 126.7 0.0 1.2e-36 126.3 0.0 1.1 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Aldedh PF00171.17 gi|296242084|ref|YP_003649571.1| - 0.00014 20.3 0.0 0.0002 19.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Pox_D5 PF03288.11 gi|296242084|ref|YP_003649571.1| - 0.11 12.7 0.4 0.57 10.4 0.2 2.1 2 0 0 2 2 2 0 Poxvirus D5 protein-like Epimerase PF01370.16 gi|296242085|ref|YP_003649572.1| - 1.1e-37 129.7 0.0 1.7e-37 129.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|296242085|ref|YP_003649572.1| - 6.3e-30 103.8 0.0 7.9e-30 103.5 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|296242085|ref|YP_003649572.1| - 5e-20 71.4 0.0 1.2e-14 53.8 0.0 2.4 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|296242085|ref|YP_003649572.1| - 3.7e-18 66.1 0.0 4.7e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|296242085|ref|YP_003649572.1| - 2.7e-16 59.3 0.0 3.6e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|296242085|ref|YP_003649572.1| - 1e-11 44.5 0.0 1.5e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family Polysacc_synt_2 PF02719.10 gi|296242085|ref|YP_003649572.1| - 1.2e-05 24.4 0.1 0.00022 20.2 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|296242085|ref|YP_003649572.1| - 0.029 14.2 0.0 0.42 10.4 0.0 2.5 1 1 0 1 1 1 0 short chain dehydrogenase DapB_N PF01113.15 gi|296242085|ref|YP_003649572.1| - 0.086 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|296242085|ref|YP_003649572.1| - 0.16 10.8 0.0 0.25 10.2 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase HAD_2 PF13419.1 gi|296242086|ref|YP_003649573.1| - 7.3e-28 97.9 0.0 8.4e-28 97.7 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|296242086|ref|YP_003649573.1| - 4.1e-12 46.9 0.0 1.6e-07 31.9 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|296242086|ref|YP_003649573.1| - 1.5e-08 34.2 0.0 2.3e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|296242086|ref|YP_003649573.1| - 8.2e-08 32.6 0.0 1.3e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|296242086|ref|YP_003649573.1| - 2.1e-05 24.1 0.1 0.00035 20.2 0.0 2.2 2 1 0 2 2 2 1 Acid Phosphatase NIF PF03031.13 gi|296242086|ref|YP_003649573.1| - 0.027 14.1 0.3 0.64 9.6 0.0 2.1 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.1 gi|296242086|ref|YP_003649573.1| - 0.036 13.9 0.3 0.18 11.6 0.2 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|296242086|ref|YP_003649573.1| - 0.046 13.2 0.0 0.094 12.2 0.0 1.5 1 1 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Put_Phosphatase PF06888.7 gi|296242086|ref|YP_003649573.1| - 0.048 12.8 0.8 1.9 7.5 0.3 3.0 2 1 0 2 2 2 0 Putative Phosphatase ABC2_membrane PF01061.19 gi|296242088|ref|YP_003649575.1| - 0.29 10.2 33.6 0.01 15.0 18.7 1.8 1 1 1 2 2 2 0 ABC-2 type transporter ABC_tran PF00005.22 gi|296242089|ref|YP_003649576.1| - 3.4e-27 95.3 0.0 7.8e-27 94.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242089|ref|YP_003649576.1| - 2.2e-12 47.5 1.5 1.8e-10 41.2 1.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|296242089|ref|YP_003649576.1| - 3.1e-05 23.2 0.8 0.11 11.5 0.1 2.4 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|296242089|ref|YP_003649576.1| - 3.3e-05 23.3 0.4 0.0001 21.7 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|296242089|ref|YP_003649576.1| - 0.00019 21.8 0.5 0.00085 19.6 0.1 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|296242089|ref|YP_003649576.1| - 0.00029 21.0 0.8 0.0038 17.4 0.1 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|296242089|ref|YP_003649576.1| - 0.0068 15.1 0.0 0.01 14.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SRP54 PF00448.17 gi|296242089|ref|YP_003649576.1| - 0.013 15.0 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|296242089|ref|YP_003649576.1| - 0.026 14.4 0.0 0.08 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|296242089|ref|YP_003649576.1| - 0.026 14.4 0.2 0.057 13.4 0.0 1.8 2 1 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.7 gi|296242089|ref|YP_003649576.1| - 0.049 12.7 0.0 0.095 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|296242089|ref|YP_003649576.1| - 0.066 12.4 0.1 2.9 7.0 0.0 2.4 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|296242089|ref|YP_003649576.1| - 0.08 13.2 0.2 0.34 11.2 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|296242089|ref|YP_003649576.1| - 0.091 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|296242089|ref|YP_003649576.1| - 0.14 13.0 0.3 0.33 11.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|296242089|ref|YP_003649576.1| - 0.15 12.2 0.7 0.96 9.6 0.2 2.7 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|296242089|ref|YP_003649576.1| - 0.2 11.2 0.4 1.1 8.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain MatE PF01554.13 gi|296242090|ref|YP_003649577.1| - 4.4e-55 185.7 34.0 3.3e-29 101.6 8.5 2.6 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|296242090|ref|YP_003649577.1| - 9.4e-09 35.2 8.1 9.4e-09 35.2 5.6 4.4 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Mannosyl_trans3 PF11051.3 gi|296242091|ref|YP_003649578.1| - 0.075 12.3 0.0 0.075 12.3 0.0 1.0 1 0 0 1 1 1 0 Mannosyltransferase putative ECF-ribofla_trS PF07155.7 gi|296242092|ref|YP_003649579.1| - 7.6e-25 87.5 22.2 4.7e-19 68.7 7.1 2.1 2 0 0 2 2 2 2 ECF-type riboflavin transporter, S component DUF1030 PF06270.6 gi|296242092|ref|YP_003649579.1| - 0.79 9.3 5.2 2.9 7.4 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1030) DUF4131 PF13567.1 gi|296242092|ref|YP_003649579.1| - 4 6.8 8.8 0.58 9.5 0.7 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4131) ABC_tran PF00005.22 gi|296242093|ref|YP_003649580.1| - 7.7e-46 155.7 0.0 3.3e-23 82.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|296242093|ref|YP_003649580.1| - 1.3e-21 77.8 3.4 1.2e-07 31.9 0.1 4.2 2 2 1 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|296242093|ref|YP_003649580.1| - 1.5e-10 40.4 1.1 1.2e-05 24.6 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|296242093|ref|YP_003649580.1| - 4.6e-10 39.1 0.8 0.01 15.1 0.0 4.0 3 1 1 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|296242093|ref|YP_003649580.1| - 8.7e-10 39.2 0.6 0.00019 21.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|296242093|ref|YP_003649580.1| - 5.9e-09 35.4 0.4 0.0044 16.1 0.0 3.7 3 1 1 4 4 4 2 AAA ATPase domain AAA_25 PF13481.1 gi|296242093|ref|YP_003649580.1| - 1.6e-06 27.6 0.4 0.0085 15.5 0.0 2.7 3 1 0 3 3 2 2 AAA domain DUF258 PF03193.11 gi|296242093|ref|YP_003649580.1| - 1.7e-06 27.3 0.3 0.01 15.0 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|296242093|ref|YP_003649580.1| - 2e-06 27.9 1.6 0.042 13.9 0.0 3.0 3 1 0 3 3 2 2 AAA domain AAA_10 PF12846.2 gi|296242093|ref|YP_003649580.1| - 1.5e-05 24.6 4.3 0.59 9.5 0.5 3.3 3 1 0 3 3 3 2 AAA-like domain AAA_18 PF13238.1 gi|296242093|ref|YP_003649580.1| - 2.1e-05 24.8 1.6 0.054 13.8 0.0 2.6 2 2 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|296242093|ref|YP_003649580.1| - 9e-05 22.1 3.0 0.2 11.4 0.1 2.6 2 0 0 2 2 2 2 Part of AAA domain AAA_30 PF13604.1 gi|296242093|ref|YP_003649580.1| - 9.6e-05 22.0 2.4 0.14 11.7 0.2 2.8 3 0 0 3 3 2 2 AAA domain UPF0079 PF02367.12 gi|296242093|ref|YP_003649580.1| - 9.9e-05 21.9 2.0 0.027 14.1 0.1 2.7 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|296242093|ref|YP_003649580.1| - 0.0001 21.2 0.9 0.29 9.9 0.0 2.2 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.7 gi|296242093|ref|YP_003649580.1| - 0.00014 21.6 4.5 0.047 13.3 0.2 2.5 2 0 0 2 2 2 2 NACHT domain AAA_33 PF13671.1 gi|296242093|ref|YP_003649580.1| - 0.00014 21.7 0.3 1.1 9.0 0.0 3.2 3 0 0 3 3 3 2 AAA domain NTPase_1 PF03266.10 gi|296242093|ref|YP_003649580.1| - 0.00019 21.1 7.4 0.16 11.6 1.0 3.9 5 0 0 5 5 4 2 NTPase AAA_16 PF13191.1 gi|296242093|ref|YP_003649580.1| - 0.00026 21.0 7.3 0.011 15.7 0.2 3.0 3 0 0 3 3 3 1 AAA ATPase domain Miro PF08477.8 gi|296242093|ref|YP_003649580.1| - 0.00028 21.3 0.1 0.65 10.5 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein AAA_17 PF13207.1 gi|296242093|ref|YP_003649580.1| - 0.00045 21.0 5.2 0.27 12.0 0.3 2.8 2 2 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|296242093|ref|YP_003649580.1| - 0.0005 20.2 0.2 1.7 8.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Rad17 PF03215.10 gi|296242093|ref|YP_003649580.1| - 0.0007 18.4 0.3 0.72 8.4 0.1 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|296242093|ref|YP_003649580.1| - 0.00081 19.6 0.2 1.5 9.0 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|296242093|ref|YP_003649580.1| - 0.0009 18.8 0.0 0.37 10.3 0.0 2.9 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.1 gi|296242093|ref|YP_003649580.1| - 0.0011 18.8 0.1 0.025 14.5 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|296242093|ref|YP_003649580.1| - 0.0015 18.4 0.8 1.6 8.7 0.0 2.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase MobB PF03205.9 gi|296242093|ref|YP_003649580.1| - 0.0017 18.0 6.2 0.24 11.1 0.4 2.7 3 0 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|296242093|ref|YP_003649580.1| - 0.0026 17.6 0.8 0.68 9.8 0.0 3.1 3 0 0 3 3 2 1 AAA domain AAA_28 PF13521.1 gi|296242093|ref|YP_003649580.1| - 0.0033 17.4 2.2 2.9 7.8 0.1 3.2 3 1 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|296242093|ref|YP_003649580.1| - 0.0043 16.5 0.7 0.051 13.0 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|296242093|ref|YP_003649580.1| - 0.0067 15.5 0.6 0.8 8.7 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin cobW PF02492.14 gi|296242093|ref|YP_003649580.1| - 0.0073 15.7 6.1 0.73 9.2 0.6 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.16 gi|296242093|ref|YP_003649580.1| - 0.0091 15.1 0.3 1.2 8.2 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MutS_V PF00488.16 gi|296242093|ref|YP_003649580.1| - 0.0092 15.4 0.0 0.22 10.9 0.0 2.3 2 0 0 2 2 2 1 MutS domain V Arch_ATPase PF01637.13 gi|296242093|ref|YP_003649580.1| - 0.012 15.3 3.6 1.9 8.0 0.1 2.5 2 0 0 2 2 2 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|296242093|ref|YP_003649580.1| - 0.027 14.0 2.3 2.3 7.7 0.2 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.9 gi|296242093|ref|YP_003649580.1| - 0.03 14.0 5.1 2.6 7.7 0.2 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) APS_kinase PF01583.15 gi|296242093|ref|YP_003649580.1| - 0.042 13.5 0.3 6.1 6.4 0.0 2.3 2 0 0 2 2 2 0 Adenylylsulphate kinase ArgK PF03308.11 gi|296242093|ref|YP_003649580.1| - 0.073 11.8 2.2 0.27 9.9 0.1 2.2 2 0 0 2 2 2 0 ArgK protein KAP_NTPase PF07693.9 gi|296242093|ref|YP_003649580.1| - 0.074 12.0 0.0 1.4 7.7 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain VirE PF05272.6 gi|296242093|ref|YP_003649580.1| - 0.078 12.4 0.3 5.7 6.3 0.0 2.2 2 0 0 2 2 2 0 Virulence-associated protein E Sigma54_activ_2 PF14532.1 gi|296242093|ref|YP_003649580.1| - 0.16 11.9 0.1 7.7 6.5 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain FeoB_N PF02421.13 gi|296242093|ref|YP_003649580.1| - 0.23 10.7 1.1 0.72 9.1 0.1 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_13 PF13166.1 gi|296242093|ref|YP_003649580.1| - 0.25 9.7 2.4 6.4 5.1 0.5 2.5 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|296242093|ref|YP_003649580.1| - 0.27 9.6 1.2 7.6 4.8 0.0 2.2 2 0 0 2 2 2 0 RNA12 protein PduV-EutP PF10662.4 gi|296242093|ref|YP_003649580.1| - 0.29 10.6 2.2 1.3 8.4 0.1 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Herpes_Helicase PF02689.9 gi|296242093|ref|YP_003649580.1| - 0.29 8.8 0.5 0.44 8.2 0.0 1.4 2 0 0 2 2 2 0 Helicase PhoH PF02562.11 gi|296242093|ref|YP_003649580.1| - 0.31 10.2 0.9 16 4.6 0.1 2.2 2 0 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.17 gi|296242093|ref|YP_003649580.1| - 0.58 8.9 5.4 7.3 5.3 0.1 3.0 3 0 0 3 3 3 0 NB-ARC domain AAA_24 PF13479.1 gi|296242093|ref|YP_003649580.1| - 1.1 8.7 6.5 2 7.9 0.1 2.6 3 0 0 3 3 2 0 AAA domain DAP3 PF10236.4 gi|296242093|ref|YP_003649580.1| - 1.2 7.9 3.3 6.5 5.5 0.3 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ABC_ATPase PF09818.4 gi|296242093|ref|YP_003649580.1| - 1.3 7.5 4.2 13 4.2 0.9 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class G-alpha PF00503.15 gi|296242093|ref|YP_003649580.1| - 1.8 7.1 3.1 10 4.6 0.2 2.1 2 0 0 2 2 2 0 G-protein alpha subunit DUF87 PF01935.12 gi|296242093|ref|YP_003649580.1| - 3.2 7.5 6.7 1.9 8.2 0.4 2.6 3 0 0 3 3 2 0 Domain of unknown function DUF87 SRP54 PF00448.17 gi|296242093|ref|YP_003649580.1| - 5.8 6.3 5.8 11 5.3 0.5 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.4 gi|296242093|ref|YP_003649580.1| - 7.7 5.0 5.2 50 2.3 0.0 3.4 4 0 0 4 4 4 0 Type IV secretion-system coupling protein DNA-binding domain PmbA_TldD PF01523.11 gi|296242095|ref|YP_003649582.1| - 6.9e-70 235.6 0.4 8.3e-70 235.3 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|296242096|ref|YP_003649583.1| - 2.2e-49 168.3 0.1 3.1e-49 167.8 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Clr5 PF14420.1 gi|296242096|ref|YP_003649583.1| - 0.29 11.0 1.0 17 5.3 0.7 2.3 2 0 0 2 2 2 0 Clr5 domain BPL_LplA_LipB PF03099.14 gi|296242097|ref|YP_003649584.1| - 1.6e-12 47.5 0.1 2.8e-12 46.7 0.1 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|296242097|ref|YP_003649584.1| - 8.4e-07 28.5 0.1 1.5e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain CxxCxxCC PF03692.10 gi|296242098|ref|YP_003649585.1| - 4.8e-10 39.7 0.3 7.9e-10 39.0 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain CTP_transf_2 PF01467.21 gi|296242099|ref|YP_003649586.1| - 3.1e-10 40.3 0.0 5.4e-10 39.5 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase HIGH_NTase1 PF05636.6 gi|296242099|ref|YP_003649586.1| - 0.061 12.3 0.0 2 7.3 0.0 2.1 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase TrkA_N PF02254.13 gi|296242099|ref|YP_003649586.1| - 0.1 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 TrkA-N domain Peptidase_M50 PF02163.17 gi|296242100|ref|YP_003649587.1| - 3.4e-12 45.7 14.1 3.4e-11 42.4 9.8 2.1 1 1 0 1 1 1 1 Peptidase family M50 Vps23_core PF09454.5 gi|296242101|ref|YP_003649588.1| - 0.0036 16.8 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 Vps23 core domain PduL PF06130.7 gi|296242103|ref|YP_003649590.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Propanediol utilisation protein PduL HD PF01966.17 gi|296242104|ref|YP_003649591.1| - 4e-13 49.4 2.1 5.2e-13 49.0 0.7 1.8 2 0 0 2 2 2 1 HD domain HDOD PF08668.7 gi|296242104|ref|YP_003649591.1| - 0.1 11.8 0.0 0.3 10.3 0.0 1.8 2 0 0 2 2 2 0 HDOD domain HTH_24 PF13412.1 gi|296242105|ref|YP_003649592.1| - 2.2e-05 23.7 0.2 2.6e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|296242105|ref|YP_003649592.1| - 0.00027 20.3 0.1 0.00065 19.1 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|296242105|ref|YP_003649592.1| - 0.00072 19.1 0.1 0.00086 18.9 0.1 1.1 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|296242105|ref|YP_003649592.1| - 0.0011 18.5 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|296242105|ref|YP_003649592.1| - 0.0018 17.8 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain FaeA PF04703.7 gi|296242105|ref|YP_003649592.1| - 0.0075 16.4 0.0 0.0089 16.1 0.0 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_40 PF14493.1 gi|296242105|ref|YP_003649592.1| - 0.011 15.8 0.0 0.019 15.1 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|296242105|ref|YP_003649592.1| - 0.019 14.7 0.0 0.023 14.5 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|296242105|ref|YP_003649592.1| - 0.021 14.3 0.0 0.027 14.0 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|296242105|ref|YP_003649592.1| - 0.028 13.6 0.0 0.052 12.7 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HARE-HTH PF05066.8 gi|296242105|ref|YP_003649592.1| - 0.034 14.4 0.0 0.058 13.7 0.0 1.4 1 0 0 1 1 1 0 HB1, ASXL, restriction endonuclease HTH domain TrmB PF01978.14 gi|296242105|ref|YP_003649592.1| - 0.038 13.7 0.1 0.051 13.2 0.0 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1441 PF07278.6 gi|296242105|ref|YP_003649592.1| - 0.043 13.4 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) HTH_29 PF13551.1 gi|296242105|ref|YP_003649592.1| - 0.044 13.9 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix DUF2089 PF09862.4 gi|296242105|ref|YP_003649592.1| - 0.045 13.5 0.0 0.069 12.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) GerE PF00196.14 gi|296242105|ref|YP_003649592.1| - 0.054 12.8 0.0 0.1 11.8 0.0 1.5 1 1 1 2 2 2 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.15 gi|296242105|ref|YP_003649592.1| - 0.084 12.9 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_30 PF13556.1 gi|296242105|ref|YP_003649592.1| - 0.085 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Replic_Relax PF13814.1 gi|296242105|ref|YP_003649592.1| - 0.086 12.6 0.0 0.1 12.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_5 PF01022.15 gi|296242105|ref|YP_003649592.1| - 0.09 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|296242105|ref|YP_003649592.1| - 0.094 12.1 0.0 0.17 11.3 0.0 1.4 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2582 PF10771.4 gi|296242105|ref|YP_003649592.1| - 0.098 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) HTH_20 PF12840.2 gi|296242105|ref|YP_003649592.1| - 0.11 12.3 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain ACT PF01842.20 gi|296242106|ref|YP_003649593.1| - 0.0008 18.8 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 ACT domain DUF77 PF01910.12 gi|296242106|ref|YP_003649593.1| - 0.0017 18.0 0.0 0.0043 16.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function DUF77 ACT_4 PF13291.1 gi|296242106|ref|YP_003649593.1| - 0.0033 17.7 0.2 0.0089 16.3 0.1 1.8 2 0 0 2 2 2 1 ACT domain Ykof PF07615.6 gi|296242106|ref|YP_003649593.1| - 0.029 14.5 0.0 0.083 13.0 0.0 1.7 2 0 0 2 2 2 0 YKOF-related Family HTH_33 PF13592.1 gi|296242108|ref|YP_003649595.1| - 0.1 12.1 0.4 0.79 9.3 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix DUF2341 PF10102.4 gi|296242110|ref|YP_003649597.1| - 3.5e-16 59.1 0.1 1.7e-15 56.9 0.1 2.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2341) T2SF PF00482.18 gi|296242113|ref|YP_003649600.1| - 2.5e-15 56.4 8.5 1.5e-08 34.6 0.1 3.8 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|296242114|ref|YP_003649601.1| - 1.2e-51 175.2 0.0 1.9e-51 174.5 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|296242114|ref|YP_003649601.1| - 6.5e-05 23.2 0.0 0.00022 21.5 0.0 1.9 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|296242114|ref|YP_003649601.1| - 0.0013 18.1 0.6 0.0033 16.9 0.2 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|296242114|ref|YP_003649601.1| - 0.0022 17.6 0.2 0.0081 15.8 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain PIF1 PF05970.9 gi|296242114|ref|YP_003649601.1| - 0.0029 16.5 0.1 0.0049 15.8 0.1 1.2 1 0 0 1 1 1 1 PIF1-like helicase AAA_28 PF13521.1 gi|296242114|ref|YP_003649601.1| - 0.0039 17.1 0.2 0.016 15.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|296242114|ref|YP_003649601.1| - 0.017 14.7 0.2 0.061 13.0 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|296242114|ref|YP_003649601.1| - 0.035 14.4 0.2 0.22 11.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|296242114|ref|YP_003649601.1| - 0.038 13.4 0.1 0.1 12.0 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|296242114|ref|YP_003649601.1| - 0.043 14.1 0.7 0.1 12.9 0.1 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|296242114|ref|YP_003649601.1| - 0.045 12.9 0.0 0.085 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|296242114|ref|YP_003649601.1| - 0.057 12.9 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|296242114|ref|YP_003649601.1| - 0.063 12.7 0.0 0.76 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain Miro PF08477.8 gi|296242114|ref|YP_003649601.1| - 0.064 13.7 0.0 0.37 11.3 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein AAA_25 PF13481.1 gi|296242114|ref|YP_003649601.1| - 0.065 12.6 0.1 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|296242114|ref|YP_003649601.1| - 0.075 12.6 0.1 1.1 8.9 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|296242114|ref|YP_003649601.1| - 0.1 12.1 0.1 0.63 9.5 0.1 2.1 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.1 gi|296242114|ref|YP_003649601.1| - 0.11 13.3 0.0 0.34 11.7 0.0 2.0 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|296242114|ref|YP_003649601.1| - 0.19 10.3 0.3 0.48 8.9 0.4 1.5 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF2226 PF09987.4 gi|296242115|ref|YP_003649602.1| - 0.00077 18.6 0.7 0.0011 18.1 0.3 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2226) Upf2 PF04050.9 gi|296242115|ref|YP_003649602.1| - 0.038 13.7 0.6 0.058 13.1 0.4 1.2 1 0 0 1 1 1 0 Up-frameshift suppressor 2 DHHA1 PF02272.14 gi|296242116|ref|YP_003649603.1| - 4.5e-05 23.0 0.1 0.00013 21.5 0.1 1.8 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|296242116|ref|YP_003649603.1| - 0.0067 16.0 0.0 0.026 14.1 0.0 1.9 2 1 0 2 2 2 1 DHH family DUF429 PF04250.8 gi|296242117|ref|YP_003649604.1| - 1.1e-21 77.0 0.0 1.6e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF429) FAD_binding_2 PF00890.19 gi|296242118|ref|YP_003649605.1| - 7.9e-11 41.4 2.0 1.4e-06 27.4 1.8 2.2 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|296242118|ref|YP_003649605.1| - 5.4e-09 35.4 1.0 2e-08 33.6 1.0 1.7 2 0 0 2 2 2 1 Thi4 family DAO PF01266.19 gi|296242118|ref|YP_003649605.1| - 7.4e-09 34.9 1.7 1.9e-05 23.7 0.9 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|296242118|ref|YP_003649605.1| - 2.6e-07 30.0 2.0 1.4e-06 27.6 1.4 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|296242118|ref|YP_003649605.1| - 5.5e-07 28.8 0.0 2.4e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.17 gi|296242118|ref|YP_003649605.1| - 6.5e-07 28.5 0.0 9.2e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|296242118|ref|YP_003649605.1| - 6.6e-07 29.4 0.0 1.3e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|296242118|ref|YP_003649605.1| - 7e-07 28.2 0.1 0.011 14.4 0.0 2.4 3 0 0 3 3 3 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|296242118|ref|YP_003649605.1| - 8e-07 28.4 3.1 4e-05 22.8 0.2 2.5 2 0 0 2 2 2 2 FAD binding domain Pyr_redox PF00070.22 gi|296242118|ref|YP_003649605.1| - 2.2e-05 24.7 2.6 7.5e-05 23.0 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|296242118|ref|YP_003649605.1| - 0.0001 20.8 1.2 0.00025 19.6 0.9 1.5 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|296242118|ref|YP_003649605.1| - 0.0017 18.4 0.1 0.0036 17.4 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|296242118|ref|YP_003649605.1| - 0.0019 18.2 0.3 0.0019 18.2 0.2 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|296242118|ref|YP_003649605.1| - 0.0019 17.8 0.3 0.0035 17.0 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|296242118|ref|YP_003649605.1| - 0.017 14.4 0.2 0.047 13.0 0.2 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.16 gi|296242118|ref|YP_003649605.1| - 0.018 14.6 0.4 0.039 13.5 0.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PYNP_C PF07831.8 gi|296242119|ref|YP_003649606.1| - 6.9e-16 57.4 0.4 2.5e-14 52.4 0.0 2.9 3 0 0 3 3 3 1 Pyrimidine nucleoside phosphorylase C-terminal domain Glycos_transf_3 PF00591.16 gi|296242119|ref|YP_003649606.1| - 9.6e-11 41.5 4.4 1.9e-10 40.5 1.3 2.7 2 1 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|296242119|ref|YP_003649606.1| - 1.4e-09 37.4 0.0 8.1e-09 34.9 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain CDC48_N PF02359.13 gi|296242119|ref|YP_003649606.1| - 0.0057 16.5 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Molydop_binding PF01568.16 gi|296242119|ref|YP_003649606.1| - 0.059 13.1 0.0 0.99 9.2 0.0 2.3 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain DUF2118 PF09891.4 gi|296242119|ref|YP_003649606.1| - 0.076 12.7 0.1 1.6 8.4 0.0 2.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) DUF2254 PF10011.4 gi|296242119|ref|YP_003649606.1| - 0.087 11.2 0.0 0.15 10.4 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) Amidohydro_3 PF07969.6 gi|296242120|ref|YP_003649607.1| - 5.4e-50 170.7 0.0 6.9e-50 170.4 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|296242120|ref|YP_003649607.1| - 8.1e-05 22.4 0.3 0.12 11.9 0.0 3.2 3 1 0 3 3 3 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|296242120|ref|YP_003649607.1| - 0.027 14.5 0.1 1.2 9.1 0.0 2.8 3 0 0 3 3 3 0 Amidohydrolase Amidohydro_5 PF13594.1 gi|296242120|ref|YP_003649607.1| - 0.084 12.6 0.0 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 Amidohydrolase Laps PF10169.4 gi|296242121|ref|YP_003649608.1| - 0.079 13.1 2.1 0.088 13.0 1.5 1.1 1 0 0 1 1 1 0 Learning-associated protein FlaC_arch PF05377.6 gi|296242121|ref|YP_003649608.1| - 0.11 12.4 0.2 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) PGM_PMM_I PF02878.11 gi|296242122|ref|YP_003649609.1| - 5.6e-30 103.6 0.0 2.8e-29 101.3 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|296242122|ref|YP_003649609.1| - 3.6e-19 69.0 0.0 9.7e-19 67.6 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|296242122|ref|YP_003649609.1| - 7.5e-13 48.2 0.0 1.7e-12 47.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|296242122|ref|YP_003649609.1| - 4.9e-05 23.3 0.2 0.00013 21.9 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GnsAB PF08178.6 gi|296242122|ref|YP_003649609.1| - 0.053 13.1 3.3 0.12 12.0 0.3 2.7 3 0 0 3 3 3 0 GnsA/GnsB family AdoMet_dc PF02675.10 gi|296242123|ref|YP_003649610.1| - 3.4e-33 113.7 0.0 3.8e-33 113.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Lycopene_cycl PF05834.7 gi|296242124|ref|YP_003649611.1| - 8.9e-08 31.4 0.0 1e-06 27.9 0.0 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|296242124|ref|YP_003649611.1| - 4.9e-05 22.5 0.0 0.017 14.1 0.0 2.7 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|296242124|ref|YP_003649611.1| - 0.00076 19.4 0.0 0.0018 18.2 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|296242124|ref|YP_003649611.1| - 0.00089 17.8 0.0 0.0014 17.1 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|296242124|ref|YP_003649611.1| - 0.0038 17.2 0.0 0.0078 16.3 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|296242124|ref|YP_003649611.1| - 0.0073 16.1 0.0 0.011 15.5 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|296242124|ref|YP_003649611.1| - 0.014 14.3 0.1 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.12 gi|296242124|ref|YP_003649611.1| - 0.018 14.1 0.0 0.024 13.7 0.0 1.2 1 0 0 1 1 1 0 Thi4 family NAD_binding_9 PF13454.1 gi|296242124|ref|YP_003649611.1| - 0.13 12.0 0.2 0.26 11.0 0.0 1.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|296242124|ref|YP_003649611.1| - 0.18 10.5 0.0 0.25 10.1 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain HycI PF01750.13 gi|296242125|ref|YP_003649612.1| - 4.7e-10 39.1 0.0 6.5e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease TPP_enzyme_C PF02775.16 gi|296242126|ref|YP_003649613.1| - 3.3e-23 81.9 0.1 4.5e-23 81.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|296242126|ref|YP_003649613.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|296242127|ref|YP_003649614.1| - 9.7e-75 251.0 0.6 1.3e-74 250.5 0.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|296242127|ref|YP_003649614.1| - 5.6e-05 23.0 0.0 0.00011 22.1 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|296242128|ref|YP_003649615.1| - 1.7e-14 52.6 12.9 3.9e-08 32.5 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296242128|ref|YP_003649615.1| - 9.4e-11 41.4 8.9 1.3e-10 41.0 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296242128|ref|YP_003649615.1| - 8.9e-10 38.0 13.1 4.5e-06 26.2 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|296242128|ref|YP_003649615.1| - 3.7e-09 36.2 11.1 7.3e-09 35.2 7.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296242128|ref|YP_003649615.1| - 3.5e-08 33.6 10.6 6.5e-08 32.8 7.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296242128|ref|YP_003649615.1| - 1e-07 31.4 10.2 0.0011 18.7 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|296242128|ref|YP_003649615.1| - 2.2e-07 31.5 8.3 0.00016 22.3 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|296242128|ref|YP_003649615.1| - 7.1e-07 29.4 10.9 1.4e-06 28.4 7.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296242128|ref|YP_003649615.1| - 7e-05 23.3 11.2 0.034 14.7 0.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|296242128|ref|YP_003649615.1| - 0.00011 22.5 11.6 0.0011 19.2 0.9 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|296242128|ref|YP_003649615.1| - 0.00048 20.2 10.7 0.034 14.4 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296242128|ref|YP_003649615.1| - 0.001 19.0 11.1 0.12 12.3 8.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296242128|ref|YP_003649615.1| - 0.0025 18.1 9.4 0.28 11.5 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296242128|ref|YP_003649615.1| - 0.0031 17.9 6.7 0.32 11.4 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|296242128|ref|YP_003649615.1| - 0.1 12.4 5.7 0.15 11.9 4.0 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|296242128|ref|YP_003649615.1| - 3.6 8.3 17.7 0.22 12.1 4.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain POR PF01558.13 gi|296242129|ref|YP_003649616.1| - 1.1e-36 126.3 0.0 1.2e-36 126.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_7 PF12838.2 gi|296242130|ref|YP_003649617.1| - 5.9e-13 48.9 17.1 8.3e-10 38.9 5.1 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|296242130|ref|YP_003649617.1| - 1.6e-11 43.2 14.1 7.2e-06 25.3 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296242130|ref|YP_003649617.1| - 5.7e-10 38.8 10.6 1.9e-05 24.3 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296242130|ref|YP_003649617.1| - 1.1e-09 37.6 12.8 6e-05 22.7 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|296242130|ref|YP_003649617.1| - 1.5e-09 37.9 6.0 0.00029 21.0 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242130|ref|YP_003649617.1| - 2.9e-09 36.5 22.6 1.6e-06 27.8 8.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296242130|ref|YP_003649617.1| - 1.3e-08 34.2 13.9 8.7e-05 22.2 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|296242130|ref|YP_003649617.1| - 1.4e-08 34.4 11.8 0.00032 20.7 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296242130|ref|YP_003649617.1| - 4.1e-08 33.1 31.1 1.7e-05 24.7 7.6 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296242130|ref|YP_003649617.1| - 3e-06 27.4 10.2 0.0002 21.6 7.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296242130|ref|YP_003649617.1| - 1.4e-05 25.3 6.5 0.014 15.7 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242130|ref|YP_003649617.1| - 1.6e-05 25.5 9.8 0.011 16.4 7.8 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.2 gi|296242130|ref|YP_003649617.1| - 3.2e-05 24.1 14.6 0.026 15.0 3.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|296242130|ref|YP_003649617.1| - 3.7e-05 24.2 6.1 0.016 15.7 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|296242130|ref|YP_003649617.1| - 0.00022 21.5 10.3 0.0099 16.2 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain TNFR_c6 PF00020.13 gi|296242130|ref|YP_003649617.1| - 3.9 7.6 7.2 6.9 6.8 0.4 2.3 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region POR_N PF01855.14 gi|296242131|ref|YP_003649618.1| - 5.1e-65 219.1 0.1 6.3e-65 218.9 0.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|296242131|ref|YP_003649618.1| - 5.8e-08 32.7 0.0 1.3e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|296242131|ref|YP_003649618.1| - 0.012 15.1 0.1 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|296242132|ref|YP_003649619.1| - 4.7e-32 110.6 0.2 1.2e-31 109.3 0.0 1.7 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR PF01558.13 gi|296242133|ref|YP_003649620.1| - 3.4e-29 101.9 0.0 4e-29 101.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TFX_C PF14601.1 gi|296242134|ref|YP_003649621.1| - 1.6e-14 53.4 0.4 2.4e-14 52.8 0.1 1.4 2 0 0 2 2 2 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|296242134|ref|YP_003649621.1| - 5.8e-09 35.1 1.8 8.3e-09 34.6 0.6 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|296242134|ref|YP_003649621.1| - 2.1e-05 23.7 1.0 3.4e-05 23.0 0.7 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_37 PF13744.1 gi|296242134|ref|YP_003649621.1| - 6.5e-05 22.6 0.6 0.00013 21.7 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|296242134|ref|YP_003649621.1| - 7.5e-05 22.5 0.1 0.00021 21.1 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|296242134|ref|YP_003649621.1| - 0.00013 21.4 0.7 0.00035 20.1 0.1 2.0 2 1 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|296242134|ref|YP_003649621.1| - 0.00033 20.0 1.0 0.0008 18.8 0.2 2.0 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|296242134|ref|YP_003649621.1| - 0.00066 19.1 0.1 0.0018 17.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|296242134|ref|YP_003649621.1| - 0.00085 19.3 0.8 0.0016 18.4 0.3 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|296242134|ref|YP_003649621.1| - 0.0013 18.5 1.3 0.002 17.9 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix RepB PF07506.6 gi|296242134|ref|YP_003649621.1| - 0.0081 16.0 0.1 0.012 15.5 0.1 1.2 1 0 0 1 1 1 1 RepB plasmid partitioning protein UN_NPL4 PF11543.3 gi|296242134|ref|YP_003649621.1| - 0.026 14.8 0.0 0.048 13.9 0.0 1.4 1 0 0 1 1 1 0 Nuclear pore localisation protein NPL4 HTH_28 PF13518.1 gi|296242134|ref|YP_003649621.1| - 0.026 14.5 0.1 0.061 13.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain CPSase_L_D3 PF02787.14 gi|296242134|ref|YP_003649621.1| - 0.09 12.5 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KorB PF08535.5 gi|296242134|ref|YP_003649621.1| - 0.092 12.9 0.1 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 KorB domain EamA PF00892.15 gi|296242135|ref|YP_003649622.1| - 2.1e-19 69.8 15.1 2.5e-19 69.5 10.5 1.1 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|296242135|ref|YP_003649622.1| - 2.3e-05 24.5 12.1 2.3e-05 24.5 8.4 2.0 1 1 1 2 2 2 1 Multidrug resistance efflux transporter UAA PF08449.6 gi|296242135|ref|YP_003649622.1| - 6.6e-05 21.9 9.7 8.3e-05 21.6 6.7 1.3 1 0 0 1 1 1 1 UAA transporter family TPT PF03151.11 gi|296242135|ref|YP_003649622.1| - 0.0009 18.9 11.3 0.0099 15.5 7.8 2.2 1 1 0 1 1 1 1 Triose-phosphate Transporter family DUF914 PF06027.7 gi|296242135|ref|YP_003649622.1| - 0.1 11.4 7.6 0.14 10.9 5.3 1.4 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF914) LtrA PF06772.6 gi|296242135|ref|YP_003649622.1| - 0.2 10.5 11.6 0.24 10.2 8.0 1.0 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) CD47 PF04549.9 gi|296242135|ref|YP_003649622.1| - 0.83 9.6 16.0 0.53 10.2 4.5 2.1 2 0 0 2 2 2 0 CD47 transmembrane region SUR7 PF06687.7 gi|296242135|ref|YP_003649622.1| - 8.7 5.8 13.2 0.071 12.6 1.9 2.0 2 0 0 2 2 2 0 SUR7/PalI family DUF2299 PF10061.4 gi|296242136|ref|YP_003649623.1| - 1.4e-14 53.7 0.0 1.5e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) MacB_PCD PF12704.2 gi|296242137|ref|YP_003649624.1| - 3.4e-38 131.5 4.4 3.4e-38 131.5 3.0 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|296242137|ref|YP_003649624.1| - 5.1e-20 71.4 9.8 5.1e-20 71.4 6.8 2.4 2 0 0 2 2 2 1 FtsX-like permease family NapD PF03927.8 gi|296242137|ref|YP_003649624.1| - 0.023 14.5 0.0 0.98 9.3 0.0 2.6 2 0 0 2 2 2 0 NapD protein YjgP_YjgQ PF03739.9 gi|296242137|ref|YP_003649624.1| - 0.032 12.9 4.7 0.056 12.1 3.2 1.4 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family NPCBM_assoc PF10633.4 gi|296242138|ref|YP_003649625.1| - 0.0038 17.2 0.0 1.5 8.8 0.0 4.1 6 0 0 6 6 6 2 NPCBM-associated, NEW3 domain of alpha-galactosidase ABC_tran PF00005.22 gi|296242139|ref|YP_003649626.1| - 5.9e-36 123.7 0.1 7.5e-36 123.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242139|ref|YP_003649626.1| - 1.4e-10 41.6 0.0 9.5e-05 22.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|296242139|ref|YP_003649626.1| - 0.0016 18.3 0.1 0.013 15.4 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|296242139|ref|YP_003649626.1| - 0.0019 17.6 0.5 0.0037 16.7 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|296242139|ref|YP_003649626.1| - 0.0024 17.1 0.1 1.2 8.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|296242139|ref|YP_003649626.1| - 0.0029 17.6 0.4 0.0058 16.6 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|296242139|ref|YP_003649626.1| - 0.0032 16.6 0.2 0.0048 16.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|296242139|ref|YP_003649626.1| - 0.0042 17.2 0.1 0.01 15.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|296242139|ref|YP_003649626.1| - 0.008 15.0 0.1 0.013 14.4 0.1 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.1 gi|296242139|ref|YP_003649626.1| - 0.012 15.9 0.1 0.02 15.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|296242139|ref|YP_003649626.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|296242139|ref|YP_003649626.1| - 0.02 14.3 0.1 0.034 13.5 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|296242139|ref|YP_003649626.1| - 0.024 14.3 0.0 0.069 12.9 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|296242139|ref|YP_003649626.1| - 0.037 13.7 0.1 1.4 8.6 0.0 2.4 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|296242139|ref|YP_003649626.1| - 0.037 13.9 0.1 0.046 13.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|296242139|ref|YP_003649626.1| - 0.043 13.4 0.1 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|296242139|ref|YP_003649626.1| - 0.044 14.6 0.3 0.082 13.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|296242139|ref|YP_003649626.1| - 0.069 12.8 0.2 0.25 11.0 0.1 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|296242139|ref|YP_003649626.1| - 0.089 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF99 PF01949.11 gi|296242139|ref|YP_003649626.1| - 0.091 11.8 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF99 NB-ARC PF00931.17 gi|296242139|ref|YP_003649626.1| - 0.094 11.5 0.3 0.13 11.0 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|296242139|ref|YP_003649626.1| - 0.12 11.9 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|296242139|ref|YP_003649626.1| - 0.18 11.1 1.4 0.28 10.5 0.2 1.8 2 1 0 2 2 2 0 AAA domain PadR PF03551.9 gi|296242140|ref|YP_003649627.1| - 9.9e-16 57.2 2.8 3.1e-15 55.7 0.6 2.1 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|296242140|ref|YP_003649627.1| - 3.3e-06 27.0 0.4 6e-06 26.1 0.1 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain YjcQ PF09639.5 gi|296242140|ref|YP_003649627.1| - 6.8e-05 22.8 0.6 0.00017 21.5 0.1 1.8 2 0 0 2 2 2 1 YjcQ protein HTH_45 PF14947.1 gi|296242140|ref|YP_003649627.1| - 8.8e-05 22.2 0.3 0.00021 21.0 0.2 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|296242140|ref|YP_003649627.1| - 0.00059 19.5 0.1 0.0017 18.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HxlR PF01638.12 gi|296242140|ref|YP_003649627.1| - 0.029 13.9 0.5 0.067 12.8 0.3 1.8 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Mrr_N PF14338.1 gi|296242140|ref|YP_003649627.1| - 0.036 14.1 0.3 0.22 11.6 0.1 2.3 1 1 2 3 3 3 0 Mrr N-terminal domain Replic_Relax PF13814.1 gi|296242140|ref|YP_003649627.1| - 0.048 13.5 0.1 0.076 12.8 0.1 1.4 1 1 0 1 1 1 0 Replication-relaxation IGR PF09597.5 gi|296242140|ref|YP_003649627.1| - 0.061 13.2 0.2 1 9.3 0.0 2.4 2 0 0 2 2 2 0 IGR protein motif HTH_12 PF08461.5 gi|296242140|ref|YP_003649627.1| - 0.19 11.5 4.6 4.9 6.9 0.2 3.4 3 2 1 4 4 4 0 Ribonuclease R winged-helix domain ABC_tran PF00005.22 gi|296242141|ref|YP_003649628.1| - 1.2e-35 122.8 0.0 1.7e-35 122.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242141|ref|YP_003649628.1| - 1.7e-13 51.2 0.2 2.3e-11 44.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|296242141|ref|YP_003649628.1| - 8.4e-07 28.3 0.3 7.1e-05 22.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF4162 PF13732.1 gi|296242141|ref|YP_003649628.1| - 5.5e-06 26.7 0.0 1.2e-05 25.6 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|296242141|ref|YP_003649628.1| - 0.00044 19.7 0.3 0.00085 18.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|296242141|ref|YP_003649628.1| - 0.00052 20.4 0.7 0.00086 19.6 0.5 1.5 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|296242141|ref|YP_003649628.1| - 0.0011 18.4 0.1 0.0022 17.4 0.1 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|296242141|ref|YP_003649628.1| - 0.0012 18.1 0.0 0.0029 16.8 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|296242141|ref|YP_003649628.1| - 0.0017 18.0 0.2 0.0037 16.9 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|296242141|ref|YP_003649628.1| - 0.0027 17.9 0.4 0.027 14.6 0.3 2.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|296242141|ref|YP_003649628.1| - 0.0038 16.6 0.0 0.02 14.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|296242141|ref|YP_003649628.1| - 0.0084 16.2 0.2 0.13 12.4 0.1 2.4 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|296242141|ref|YP_003649628.1| - 0.011 14.5 0.0 0.014 14.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NTPase_1 PF03266.10 gi|296242141|ref|YP_003649628.1| - 0.011 15.4 1.2 0.47 10.1 0.1 2.7 3 0 0 3 3 3 0 NTPase ATP_bind_3 PF01171.15 gi|296242141|ref|YP_003649628.1| - 0.031 13.7 0.0 5.3 6.4 0.0 2.3 1 1 1 2 2 2 0 PP-loop family AAA_30 PF13604.1 gi|296242141|ref|YP_003649628.1| - 0.043 13.3 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|296242141|ref|YP_003649628.1| - 0.05 13.0 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 MutS domain V IstB_IS21 PF01695.12 gi|296242141|ref|YP_003649628.1| - 0.061 12.7 0.1 7.4 5.9 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein ArgK PF03308.11 gi|296242141|ref|YP_003649628.1| - 0.086 11.6 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 ArgK protein UPF0079 PF02367.12 gi|296242141|ref|YP_003649628.1| - 0.1 12.2 0.3 0.23 11.0 0.1 1.7 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|296242141|ref|YP_003649628.1| - 0.14 12.1 0.1 0.28 11.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC2_membrane PF01061.19 gi|296242142|ref|YP_003649629.1| - 4.6e-36 123.9 22.5 7.6e-36 123.2 15.6 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|296242142|ref|YP_003649629.1| - 1.7e-19 70.0 26.2 1.7e-19 70.0 18.2 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|296242142|ref|YP_003649629.1| - 0.00024 20.3 30.1 0.00035 19.7 20.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|296242142|ref|YP_003649629.1| - 0.064 12.1 23.0 0.41 9.4 15.9 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein Cytochrom_B_N PF00033.14 gi|296242142|ref|YP_003649629.1| - 0.32 10.3 7.9 1.2 8.4 5.3 2.4 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Spermine_synth PF01564.12 gi|296242143|ref|YP_003649630.1| - 1.1e-67 227.5 0.0 1.4e-67 227.2 0.0 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|296242143|ref|YP_003649630.1| - 1.7e-05 24.8 0.0 2.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|296242143|ref|YP_003649630.1| - 0.00016 22.0 0.0 0.00024 21.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|296242143|ref|YP_003649630.1| - 0.00021 20.8 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|296242143|ref|YP_003649630.1| - 0.0057 17.2 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF43 PF01861.11 gi|296242143|ref|YP_003649630.1| - 0.0079 15.2 0.1 0.016 14.2 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF43 Methyltransf_30 PF05430.6 gi|296242143|ref|YP_003649630.1| - 0.019 14.6 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_11 PF08241.7 gi|296242143|ref|YP_003649630.1| - 0.022 15.2 0.0 0.043 14.3 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|296242143|ref|YP_003649630.1| - 0.03 13.7 0.0 0.041 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.1 gi|296242143|ref|YP_003649630.1| - 0.031 13.9 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DeoC PF01791.4 gi|296242144|ref|YP_003649631.1| - 8.8e-42 143.0 1.1 9.9e-42 142.8 0.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.16 gi|296242144|ref|YP_003649631.1| - 7e-06 25.2 1.1 9.9e-06 24.7 0.6 1.3 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase QRPTase_C PF01729.14 gi|296242144|ref|YP_003649631.1| - 0.0038 16.7 0.5 0.0057 16.1 0.4 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain GCV_H PF01597.14 gi|296242145|ref|YP_003649632.1| - 1.8e-43 147.0 0.6 2.3e-43 146.7 0.4 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.1 gi|296242145|ref|YP_003649632.1| - 0.007 16.0 0.0 0.0094 15.6 0.0 1.3 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl PF00364.17 gi|296242145|ref|YP_003649632.1| - 0.035 13.7 0.1 0.077 12.6 0.1 1.5 1 0 0 1 1 1 0 Biotin-requiring enzyme SHMT PF00464.14 gi|296242146|ref|YP_003649633.1| - 1.1e-66 224.8 0.1 1.4e-66 224.4 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|296242146|ref|YP_003649633.1| - 6.9e-09 35.2 0.1 9.3e-09 34.8 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|296242146|ref|YP_003649633.1| - 2.2e-07 30.1 0.0 9.3e-07 28.1 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|296242146|ref|YP_003649633.1| - 0.00015 20.6 0.0 0.00031 19.6 0.0 1.5 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|296242146|ref|YP_003649633.1| - 0.079 11.2 0.4 0.39 8.9 0.1 2.3 1 1 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme DUF4511 PF14974.1 gi|296242146|ref|YP_003649633.1| - 0.097 12.4 3.1 0.11 12.2 0.4 2.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4511) GCV_T PF01571.16 gi|296242147|ref|YP_003649634.1| - 1.8e-50 171.2 0.0 2.4e-50 170.8 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|296242147|ref|YP_003649634.1| - 4.8e-24 84.2 0.0 8.5e-24 83.4 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|296242147|ref|YP_003649634.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 GTP-binding protein TrmE N-terminus GDC-P PF02347.11 gi|296242148|ref|YP_003649635.1| - 5e-121 404.3 0.0 5.8e-121 404.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|296242148|ref|YP_003649635.1| - 0.00028 19.7 0.1 0.0012 17.7 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V GDC-P PF02347.11 gi|296242149|ref|YP_003649636.1| - 3.9e-10 38.9 0.0 5.5e-09 35.2 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|296242149|ref|YP_003649636.1| - 6.2e-07 28.4 0.0 1.3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|296242149|ref|YP_003649636.1| - 0.013 14.4 0.0 0.024 13.5 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|296242149|ref|YP_003649636.1| - 0.033 13.3 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Pyr_redox_2 PF07992.9 gi|296242150|ref|YP_003649637.1| - 8.6e-40 136.7 12.9 1e-24 87.5 2.0 3.9 1 1 2 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|296242150|ref|YP_003649637.1| - 5.3e-23 81.2 10.3 1.4e-21 76.6 1.2 3.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|296242150|ref|YP_003649637.1| - 4.6e-19 68.4 0.0 9.4e-19 67.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|296242150|ref|YP_003649637.1| - 6.1e-18 64.8 12.4 9.5e-06 24.7 0.1 4.1 3 1 1 4 4 4 4 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|296242150|ref|YP_003649637.1| - 9.4e-17 61.7 2.3 1.1e-09 38.7 0.2 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|296242150|ref|YP_003649637.1| - 1.3e-09 37.0 10.8 4.8e-06 25.3 0.2 4.0 3 1 1 4 4 4 2 HI0933-like protein Thi4 PF01946.12 gi|296242150|ref|YP_003649637.1| - 4.3e-08 32.5 5.1 3.5e-05 23.0 0.7 3.1 2 1 1 3 3 3 2 Thi4 family 3HCDH_N PF02737.13 gi|296242150|ref|YP_003649637.1| - 1.9e-07 30.8 4.9 4e-05 23.3 0.1 2.6 2 1 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|296242150|ref|YP_003649637.1| - 2.1e-06 27.0 5.8 0.0056 15.7 0.7 2.8 2 1 1 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|296242150|ref|YP_003649637.1| - 4e-06 25.9 11.8 5.6e-05 22.1 0.6 3.8 2 2 1 3 3 3 2 Glucose inhibited division protein A K_oxygenase PF13434.1 gi|296242150|ref|YP_003649637.1| - 1.3e-05 24.3 0.0 0.0011 17.9 0.0 2.3 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|296242150|ref|YP_003649637.1| - 1.3e-05 25.1 3.1 0.084 12.9 0.3 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|296242150|ref|YP_003649637.1| - 1.7e-05 24.6 7.5 0.00041 20.1 0.0 3.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|296242150|ref|YP_003649637.1| - 2.5e-05 23.3 9.9 0.00023 20.1 4.3 3.3 1 1 0 2 2 2 1 FAD binding domain NAD_binding_7 PF13241.1 gi|296242150|ref|YP_003649637.1| - 0.00016 21.9 1.8 0.024 14.9 0.1 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|296242150|ref|YP_003649637.1| - 0.00023 20.6 6.5 0.056 12.8 0.1 3.6 4 0 0 4 4 4 2 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.2 gi|296242150|ref|YP_003649637.1| - 0.00039 19.6 5.6 0.0011 18.1 0.3 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|296242150|ref|YP_003649637.1| - 0.00075 18.5 4.1 1.9 7.2 0.1 3.2 2 1 1 3 3 3 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|296242150|ref|YP_003649637.1| - 0.034 12.7 9.5 0.28 9.7 0.2 3.2 2 1 1 3 3 3 0 Tryptophan halogenase NAD_binding_2 PF03446.10 gi|296242150|ref|YP_003649637.1| - 0.055 13.2 0.1 5 6.9 0.0 2.5 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|296242150|ref|YP_003649637.1| - 0.059 12.9 1.3 0.095 12.2 0.0 1.9 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|296242150|ref|YP_003649637.1| - 0.079 12.6 2.1 1.3 8.6 0.0 2.9 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.1 gi|296242150|ref|YP_003649637.1| - 0.081 13.2 0.1 4.3 7.6 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain TrkA_N PF02254.13 gi|296242150|ref|YP_003649637.1| - 0.098 12.6 2.3 0.7 9.9 0.1 2.6 2 0 0 2 2 2 0 TrkA-N domain Amino_oxidase PF01593.19 gi|296242150|ref|YP_003649637.1| - 0.25 10.3 1.5 6.2 5.7 0.1 2.9 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase 2-Hacid_dh_C PF02826.14 gi|296242150|ref|YP_003649637.1| - 0.65 9.1 3.3 1 8.4 0.3 2.5 2 1 1 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Peptidase_M42 PF05343.9 gi|296242152|ref|YP_003649639.1| - 3.4e-107 357.5 0.1 3.9e-107 357.3 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|296242152|ref|YP_003649639.1| - 7.4e-14 51.6 0.0 1.5e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|296242152|ref|YP_003649639.1| - 0.0034 17.1 0.1 0.02 14.6 0.0 2.0 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|296242152|ref|YP_003649639.1| - 0.027 12.9 0.0 0.097 11.1 0.0 1.7 1 1 1 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) PHO4 PF01384.15 gi|296242153|ref|YP_003649640.1| - 1.2e-58 198.3 25.1 1.9e-58 197.6 17.4 1.3 1 0 0 1 1 1 1 Phosphate transporter family Nol1_Nop2_Fmu PF01189.12 gi|296242154|ref|YP_003649641.1| - 5.2e-44 150.7 0.0 5.8e-44 150.5 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family FtsJ PF01728.14 gi|296242154|ref|YP_003649641.1| - 0.0012 18.8 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.1 gi|296242154|ref|YP_003649641.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain UPF0113 PF03657.8 gi|296242155|ref|YP_003649642.1| - 4e-10 39.5 0.0 4.4e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) Nol1_Nop2_Fmu_2 PF13636.1 gi|296242155|ref|YP_003649642.1| - 0.021 14.9 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 pre-rRNA processing and ribosome biogenesis Yip1 PF04893.12 gi|296242156|ref|YP_003649643.1| - 3.3 7.1 13.8 1.1 8.7 4.4 2.1 1 1 1 2 2 2 0 Yip1 domain DUF2649 PF10854.3 gi|296242157|ref|YP_003649644.1| - 0.016 15.3 0.0 0.017 15.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2649) SNF PF00209.13 gi|296242158|ref|YP_003649645.1| - 2.1e-50 171.6 40.9 4.1e-27 94.8 15.6 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family Biotin_lipoyl_2 PF13533.1 gi|296242159|ref|YP_003649646.1| - 2.3e-14 52.7 4.0 1.1e-08 34.6 0.2 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like Biotin_lipoyl PF00364.17 gi|296242159|ref|YP_003649646.1| - 1e-13 50.7 5.8 2.1e-13 49.6 4.0 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme HlyD PF00529.15 gi|296242159|ref|YP_003649646.1| - 8.6e-08 31.8 4.0 7e-05 22.2 0.4 2.1 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|296242159|ref|YP_003649646.1| - 1.3e-07 31.9 1.3 0.01 16.1 0.1 2.8 3 0 0 3 3 3 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|296242159|ref|YP_003649646.1| - 2.5e-06 26.8 3.9 0.0011 18.1 0.3 2.3 1 1 1 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|296242159|ref|YP_003649646.1| - 0.011 15.4 3.7 1 9.1 0.6 2.8 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.14 gi|296242159|ref|YP_003649646.1| - 0.021 14.5 4.4 0.059 13.0 0.9 2.3 1 1 1 2 2 2 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.15 gi|296242159|ref|YP_003649646.1| - 0.029 13.9 0.3 2.1 7.8 0.1 2.6 2 1 0 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 PYNP_C PF07831.8 gi|296242159|ref|YP_003649646.1| - 0.03 13.7 0.9 4 6.9 0.0 2.4 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain Peptidase_M23 PF01551.17 gi|296242159|ref|YP_003649646.1| - 0.037 14.0 0.9 0.26 11.3 0.6 2.4 1 1 0 1 1 1 0 Peptidase family M23 DUF4457 PF14652.1 gi|296242159|ref|YP_003649646.1| - 0.082 11.8 0.0 0.089 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4457) Carboxyl_trans PF01039.17 gi|296242160|ref|YP_003649647.1| - 6.8e-190 631.6 0.0 7.6e-190 631.4 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|296242160|ref|YP_003649647.1| - 3.9e-09 36.0 0.0 3.8e-06 26.2 0.0 2.2 2 0 0 2 2 2 2 Malonate decarboxylase gamma subunit (MdcE) Thiolase_C PF02803.13 gi|296242161|ref|YP_003649648.1| - 2.2e-11 43.2 0.0 4.9e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|296242161|ref|YP_003649648.1| - 6.6e-09 35.1 0.1 5.4e-08 32.1 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|296242161|ref|YP_003649648.1| - 3.8e-05 23.2 0.7 3.8e-05 23.2 0.5 2.3 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|296242161|ref|YP_003649648.1| - 0.00058 19.7 0.8 0.032 14.0 0.0 2.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ACP_syn_III PF08545.5 gi|296242161|ref|YP_003649648.1| - 0.095 12.3 2.6 11 5.8 0.0 2.9 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III PqqD PF05402.7 gi|296242162|ref|YP_003649649.1| - 1e-10 41.4 0.5 1.4e-10 41.0 0.3 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) HTH_5 PF01022.15 gi|296242162|ref|YP_003649649.1| - 0.13 11.9 0.1 0.33 10.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family tRNA_anti-codon PF01336.20 gi|296242163|ref|YP_003649650.1| - 1.2e-08 34.6 0.2 1.8e-08 34.0 0.2 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain PS-DH PF14765.1 gi|296242163|ref|YP_003649650.1| - 0.12 11.4 0.1 0.14 11.2 0.1 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase DUF123 PF01986.11 gi|296242164|ref|YP_003649651.1| - 1.4e-24 86.0 0.0 1.8e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 DUF296 PF03479.10 gi|296242165|ref|YP_003649652.1| - 2.8e-16 59.2 0.1 3.1e-16 59.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) AAA_5 PF07728.9 gi|296242166|ref|YP_003649653.1| - 4.7e-28 97.6 0.4 1.6e-26 92.7 0.0 2.7 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|296242166|ref|YP_003649653.1| - 1.7e-07 30.9 0.0 2.9e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|296242166|ref|YP_003649653.1| - 5.3e-06 26.5 0.1 8.8e-05 22.5 0.0 2.4 2 1 1 3 3 3 1 AAA ATPase domain AAA PF00004.24 gi|296242166|ref|YP_003649653.1| - 6.7e-06 26.3 0.4 0.00057 20.0 0.0 2.9 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|296242166|ref|YP_003649653.1| - 8.5e-05 22.7 0.1 0.066 13.3 0.0 3.1 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.16 gi|296242166|ref|YP_003649653.1| - 0.00015 21.0 0.2 0.00066 18.9 0.0 2.1 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|296242166|ref|YP_003649653.1| - 0.00064 18.8 0.1 0.018 14.1 0.1 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus MCM PF00493.18 gi|296242166|ref|YP_003649653.1| - 0.0026 16.6 0.0 0.0083 14.9 0.0 1.8 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|296242166|ref|YP_003649653.1| - 0.007 15.8 0.1 0.17 11.3 0.0 2.5 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.9 gi|296242166|ref|YP_003649653.1| - 0.0098 15.8 0.1 2 8.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|296242166|ref|YP_003649653.1| - 0.058 14.2 0.6 0.59 10.9 0.4 2.6 1 1 0 1 1 1 0 AAA domain CCDC71L PF15374.1 gi|296242166|ref|YP_003649653.1| - 0.072 12.3 0.3 0.11 11.8 0.2 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 71L AAA_19 PF13245.1 gi|296242166|ref|YP_003649653.1| - 0.088 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain VWA_2 PF13519.1 gi|296242167|ref|YP_003649654.1| - 2.2e-08 34.4 0.0 5.7e-08 33.0 0.0 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|296242167|ref|YP_003649654.1| - 3.2e-08 33.4 0.0 5.9e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Hint PF01079.15 gi|296242167|ref|YP_003649654.1| - 1.3e-06 27.7 0.0 2.2e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Hint module Intein_splicing PF14890.1 gi|296242167|ref|YP_003649654.1| - 0.0014 17.5 0.1 0.83 8.4 0.0 2.9 2 1 1 3 3 3 2 Intein splicing domain Vint PF14623.1 gi|296242167|ref|YP_003649654.1| - 0.0022 17.5 0.1 0.0053 16.2 0.1 1.6 1 0 0 1 1 1 1 Hint-domain XdhC_C PF13478.1 gi|296242169|ref|YP_003649656.1| - 6.4e-28 97.7 0.0 9e-28 97.2 0.0 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain XdhC_CoxI PF02625.11 gi|296242169|ref|YP_003649656.1| - 3.4e-22 77.8 0.3 7.1e-22 76.8 0.2 1.6 1 0 0 1 1 1 1 XdhC and CoxI family TrkA_N PF02254.13 gi|296242169|ref|YP_003649656.1| - 0.0021 18.0 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.16 gi|296242169|ref|YP_003649656.1| - 0.0032 17.0 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|296242169|ref|YP_003649656.1| - 0.0052 16.4 0.0 0.0073 15.9 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|296242169|ref|YP_003649656.1| - 0.007 16.4 0.1 0.045 13.8 0.0 2.3 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|296242169|ref|YP_003649656.1| - 0.0077 15.3 0.2 0.02 14.0 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain X_fast-SP_rel PF06669.6 gi|296242169|ref|YP_003649656.1| - 0.0089 15.9 0.2 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 Xylella fastidiosa surface protein related Pyr_redox PF00070.22 gi|296242169|ref|YP_003649656.1| - 0.025 14.9 0.1 1.8 9.0 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PrpR_N PF06506.6 gi|296242169|ref|YP_003649656.1| - 0.03 13.7 0.0 0.13 11.6 0.0 1.8 1 1 1 2 2 2 0 Propionate catabolism activator HTH_15 PF12324.3 gi|296242169|ref|YP_003649656.1| - 0.042 13.4 0.0 0.23 11.1 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain of alkylmercury lyase HEM4 PF02602.10 gi|296242169|ref|YP_003649656.1| - 0.1 11.8 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD THUMP PF02926.12 gi|296242171|ref|YP_003649658.1| - 1.6e-07 31.3 0.0 2.4e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 THUMP domain Nitroreductase PF00881.19 gi|296242172|ref|YP_003649659.1| - 3e-30 105.2 0.0 3.4e-30 105.0 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family MtN3_slv PF03083.11 gi|296242172|ref|YP_003649659.1| - 0.038 13.8 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange PhoU_div PF01865.11 gi|296242173|ref|YP_003649660.1| - 7e-13 48.2 7.7 8.1e-13 48.0 5.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 Flavin_Reduct PF01613.13 gi|296242174|ref|YP_003649661.1| - 2.9e-25 88.9 0.0 3.3e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Aminotran_1_2 PF00155.16 gi|296242175|ref|YP_003649662.1| - 1.2e-44 152.7 0.0 1.3e-44 152.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|296242175|ref|YP_003649662.1| - 1.8e-05 23.6 0.0 2.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.2 gi|296242175|ref|YP_003649662.1| - 0.00011 20.9 0.0 0.00015 20.4 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.16 gi|296242175|ref|YP_003649662.1| - 0.056 12.5 0.0 0.08 12.0 0.0 1.1 1 0 0 1 1 1 0 Beta-eliminating lyase MgtE PF01769.11 gi|296242176|ref|YP_003649663.1| - 1.5e-18 67.3 31.7 1.1e-12 48.3 5.1 3.0 1 1 2 3 3 3 2 Divalent cation transporter PhoU PF01895.14 gi|296242177|ref|YP_003649664.1| - 2.7e-07 30.9 0.2 5.3e-05 23.5 0.0 2.6 2 0 0 2 2 2 1 PhoU domain TrkA_C PF02080.16 gi|296242177|ref|YP_003649664.1| - 0.00065 19.2 0.0 0.021 14.4 0.0 2.5 2 0 0 2 2 2 1 TrkA-C domain PhoU_div PF01865.11 gi|296242177|ref|YP_003649664.1| - 0.0051 16.0 1.7 0.23 10.6 0.2 2.4 2 0 0 2 2 2 2 Protein of unknown function DUF47 Enterotoxin_b PF01376.13 gi|296242177|ref|YP_003649664.1| - 0.097 12.5 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 Heat-labile enterotoxin beta chain DUF1628 PF07790.6 gi|296242178|ref|YP_003649665.1| - 0.0013 19.4 7.2 0.0013 19.3 2.9 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) CARDB PF07705.6 gi|296242178|ref|YP_003649665.1| - 0.0021 18.0 0.7 0.0029 17.6 0.5 1.3 1 0 0 1 1 1 1 CARDB BPD_transp_1 PF00528.17 gi|296242178|ref|YP_003649665.1| - 0.066 12.7 2.3 0.09 12.2 1.6 1.2 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component RRM_5 PF13893.1 gi|296242178|ref|YP_003649665.1| - 0.14 11.9 0.0 0.55 10.1 0.0 1.9 1 1 1 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FixH PF05751.6 gi|296242178|ref|YP_003649665.1| - 0.33 10.7 1.7 1.4 8.7 1.2 2.1 1 1 0 1 1 1 0 FixH DUF4179 PF13786.1 gi|296242178|ref|YP_003649665.1| - 0.64 10.2 3.4 0.45 10.7 1.3 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) YlaH PF14036.1 gi|296242181|ref|YP_003649668.1| - 0.011 15.7 2.7 0.042 13.9 1.9 2.1 1 0 0 1 1 1 0 YlaH-like protein DUF2627 PF11118.3 gi|296242181|ref|YP_003649668.1| - 2.9 8.0 5.5 1.4 9.1 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) ABC_tran PF00005.22 gi|296242182|ref|YP_003649669.1| - 6e-39 133.4 0.0 4.2e-18 65.9 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|296242182|ref|YP_003649669.1| - 7.4e-14 52.3 6.0 0.0018 18.3 0.0 4.2 3 1 1 4 4 4 4 AAA domain AAA_17 PF13207.1 gi|296242182|ref|YP_003649669.1| - 1.5e-09 38.6 0.9 0.00015 22.6 0.2 2.9 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|296242182|ref|YP_003649669.1| - 9.3e-08 32.2 0.5 0.0032 17.4 0.2 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|296242182|ref|YP_003649669.1| - 1.2e-07 32.2 1.6 0.0048 17.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|296242182|ref|YP_003649669.1| - 1.7e-06 27.1 0.5 0.00017 20.5 0.1 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|296242182|ref|YP_003649669.1| - 2e-06 27.1 3.0 0.0085 15.6 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|296242182|ref|YP_003649669.1| - 3e-06 27.5 0.8 0.0033 17.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|296242182|ref|YP_003649669.1| - 1.1e-05 24.9 0.3 0.011 15.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|296242182|ref|YP_003649669.1| - 2.8e-05 23.3 0.3 0.47 9.4 0.0 3.3 3 0 0 3 3 3 2 AAA ATPase domain AAA PF00004.24 gi|296242182|ref|YP_003649669.1| - 4e-05 23.8 1.8 0.15 12.2 0.1 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|296242182|ref|YP_003649669.1| - 4.8e-05 23.0 4.0 0.063 12.9 0.2 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|296242182|ref|YP_003649669.1| - 6.1e-05 22.5 0.3 0.012 15.1 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|296242182|ref|YP_003649669.1| - 0.00013 21.8 1.2 0.14 12.0 0.1 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|296242182|ref|YP_003649669.1| - 0.00015 21.9 4.5 0.15 12.1 0.2 2.8 3 1 0 3 3 2 2 AAA domain AAA_19 PF13245.1 gi|296242182|ref|YP_003649669.1| - 0.00017 21.2 4.4 0.25 11.1 0.3 2.5 2 0 0 2 2 2 2 Part of AAA domain AAA_30 PF13604.1 gi|296242182|ref|YP_003649669.1| - 0.00033 20.3 2.1 0.15 11.6 0.1 2.4 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|296242182|ref|YP_003649669.1| - 0.00047 20.0 0.1 0.85 9.5 0.0 2.7 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|296242182|ref|YP_003649669.1| - 0.00084 18.8 5.3 0.29 10.5 0.3 3.1 2 1 0 3 3 3 2 AAA-like domain PduV-EutP PF10662.4 gi|296242182|ref|YP_003649669.1| - 0.00097 18.6 2.1 0.065 12.7 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Mg_chelatase PF01078.16 gi|296242182|ref|YP_003649669.1| - 0.0013 17.9 0.7 0.023 13.8 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|296242182|ref|YP_003649669.1| - 0.0013 18.4 4.7 0.2 11.3 0.1 2.4 2 0 0 2 2 2 2 NACHT domain SMC_N PF02463.14 gi|296242182|ref|YP_003649669.1| - 0.0016 17.7 2.3 4.2 6.5 0.1 4.0 3 1 0 4 4 4 0 RecF/RecN/SMC N terminal domain Miro PF08477.8 gi|296242182|ref|YP_003649669.1| - 0.0022 18.4 0.7 2.1 8.8 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein DUF258 PF03193.11 gi|296242182|ref|YP_003649669.1| - 0.0028 16.8 1.3 0.93 8.6 0.2 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|296242182|ref|YP_003649669.1| - 0.0052 15.9 1.3 0.065 12.3 0.1 2.2 2 0 0 2 2 2 1 Zeta toxin PEPCK_ATP PF01293.15 gi|296242182|ref|YP_003649669.1| - 0.0085 14.6 1.4 0.72 8.3 0.0 2.2 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxykinase NB-ARC PF00931.17 gi|296242182|ref|YP_003649669.1| - 0.0096 14.8 2.5 0.71 8.6 0.1 2.3 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|296242182|ref|YP_003649669.1| - 0.014 15.4 0.1 0.083 12.9 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain SRPRB PF09439.5 gi|296242182|ref|YP_003649669.1| - 0.014 14.6 1.2 2.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ATP-synt_ab PF00006.20 gi|296242182|ref|YP_003649669.1| - 0.02 14.4 1.0 2.5 7.5 0.1 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.1 gi|296242182|ref|YP_003649669.1| - 0.022 14.6 9.5 0.14 12.1 0.3 2.7 3 0 0 3 3 2 0 AAA domain AAA_5 PF07728.9 gi|296242182|ref|YP_003649669.1| - 0.026 14.2 5.5 0.69 9.6 0.1 3.4 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) DUF3584 PF12128.3 gi|296242182|ref|YP_003649669.1| - 0.031 11.6 7.3 0.071 10.4 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) IstB_IS21 PF01695.12 gi|296242182|ref|YP_003649669.1| - 0.035 13.5 2.7 0.72 9.2 0.2 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein UPF0079 PF02367.12 gi|296242182|ref|YP_003649669.1| - 0.036 13.7 3.4 0.87 9.2 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|296242182|ref|YP_003649669.1| - 0.038 13.4 1.8 0.24 10.8 0.1 2.4 3 0 0 3 3 2 0 Sigma-54 interaction domain ResIII PF04851.10 gi|296242182|ref|YP_003649669.1| - 0.039 13.7 1.2 0.29 10.9 0.0 2.6 4 0 0 4 4 2 0 Type III restriction enzyme, res subunit DUF87 PF01935.12 gi|296242182|ref|YP_003649669.1| - 0.04 13.7 6.0 0.2 11.4 0.7 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_13 PF13166.1 gi|296242182|ref|YP_003649669.1| - 0.044 12.2 1.9 2.5 6.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|296242182|ref|YP_003649669.1| - 0.054 13.3 6.0 3.2 7.6 0.2 3.0 3 1 0 3 3 2 0 AAA domain KaiC PF06745.8 gi|296242182|ref|YP_003649669.1| - 0.056 12.5 2.7 0.73 8.9 0.1 2.3 2 0 0 2 2 2 0 KaiC DEAD PF00270.24 gi|296242182|ref|YP_003649669.1| - 0.059 12.8 2.3 0.12 11.9 0.2 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase Arf PF00025.16 gi|296242182|ref|YP_003649669.1| - 0.061 12.5 1.1 3.7 6.7 0.1 2.4 2 0 0 2 2 2 0 ADP-ribosylation factor family SRP54 PF00448.17 gi|296242182|ref|YP_003649669.1| - 0.075 12.4 5.5 2.4 7.5 0.4 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DLIC PF05783.6 gi|296242182|ref|YP_003649669.1| - 0.13 10.9 0.2 8 5.0 0.1 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) Arch_ATPase PF01637.13 gi|296242182|ref|YP_003649669.1| - 0.14 11.8 2.8 7.1 6.2 0.0 2.9 3 0 0 3 3 3 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|296242182|ref|YP_003649669.1| - 0.15 10.6 2.2 1.1 7.8 0.2 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MMR_HSR1 PF01926.18 gi|296242182|ref|YP_003649669.1| - 0.16 11.9 4.4 3.6 7.5 0.2 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|296242182|ref|YP_003649669.1| - 0.18 12.0 0.9 7.8 6.7 0.1 2.6 2 0 0 2 2 2 0 RNA helicase Thymidylate_kin PF02223.12 gi|296242182|ref|YP_003649669.1| - 0.29 10.4 2.0 2.8 7.2 0.1 2.6 2 0 0 2 2 2 0 Thymidylate kinase RuvB_N PF05496.7 gi|296242182|ref|YP_003649669.1| - 0.35 9.8 1.1 1.7 7.6 0.1 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus PhoH PF02562.11 gi|296242182|ref|YP_003649669.1| - 0.35 10.0 3.1 2.8 7.1 0.2 2.3 2 0 0 2 2 2 0 PhoH-like protein NTPase_1 PF03266.10 gi|296242182|ref|YP_003649669.1| - 0.37 10.4 4.3 3.9 7.1 0.2 2.5 2 0 0 2 2 2 0 NTPase cobW PF02492.14 gi|296242182|ref|YP_003649669.1| - 0.46 9.9 6.5 4.4 6.7 0.4 2.7 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain Pox_A32 PF04665.7 gi|296242182|ref|YP_003649669.1| - 0.57 9.4 2.3 16 4.6 0.1 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_24 PF13479.1 gi|296242182|ref|YP_003649669.1| - 0.67 9.5 9.1 1.1 8.8 0.2 2.6 3 0 0 3 3 3 0 AAA domain DUF3816 PF12822.2 gi|296242183|ref|YP_003649670.1| - 0.00025 21.0 13.1 0.00047 20.0 9.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3816) ECF-ribofla_trS PF07155.7 gi|296242183|ref|YP_003649670.1| - 1.1 8.9 8.2 7.5 6.2 5.7 2.5 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component Rhomboid PF01694.17 gi|296242184|ref|YP_003649671.1| - 9.2e-31 106.8 20.8 9.2e-31 106.8 14.4 1.8 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|296242184|ref|YP_003649671.1| - 0.013 15.7 3.6 0.017 15.4 0.6 2.6 2 0 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) Toxin_63 PF15541.1 gi|296242184|ref|YP_003649671.1| - 0.11 12.5 0.0 0.24 11.3 0.0 1.6 1 0 0 1 1 1 0 Putative toxin 63 Alpha-amylase PF00128.19 gi|296242185|ref|YP_003649672.1| - 1.6e-61 208.4 0.0 2.3e-61 207.9 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Cation_efflux PF01545.16 gi|296242186|ref|YP_003649673.1| - 3.3e-60 203.6 5.7 3.6e-60 203.4 3.9 1.0 1 0 0 1 1 1 1 Cation efflux family PAP2 PF01569.16 gi|296242186|ref|YP_003649673.1| - 4.1 7.0 16.4 9 5.9 0.3 3.5 2 1 1 3 3 3 0 PAP2 superfamily YebG PF07130.7 gi|296242187|ref|YP_003649674.1| - 0.068 12.8 0.0 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 YebG protein AFOR_C PF01314.13 gi|296242188|ref|YP_003649675.1| - 2.6e-82 276.5 0.1 3.8e-81 272.7 0.1 2.0 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|296242188|ref|YP_003649675.1| - 3.2e-60 202.9 0.0 4.6e-60 202.4 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Fer4_6 PF12837.2 gi|296242189|ref|YP_003649676.1| - 3.3e-11 42.5 28.0 1.8e-05 24.3 1.2 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_11 PF13247.1 gi|296242189|ref|YP_003649676.1| - 2.4e-10 40.1 13.6 2.6e-10 40.0 6.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242189|ref|YP_003649676.1| - 1.2e-09 37.7 29.9 2.8e-06 27.0 8.0 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296242189|ref|YP_003649676.1| - 4.4e-09 35.7 30.4 1e-05 25.1 2.0 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_7 PF12838.2 gi|296242189|ref|YP_003649676.1| - 1e-08 35.4 23.1 8.7e-06 26.0 7.9 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|296242189|ref|YP_003649676.1| - 2.3e-07 30.0 11.6 1.7e-06 27.3 2.1 5.0 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|296242189|ref|YP_003649676.1| - 3.3e-06 27.2 32.7 1.1e-05 25.6 8.3 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|296242189|ref|YP_003649676.1| - 3.6e-06 26.7 20.9 0.0014 18.4 6.6 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|296242189|ref|YP_003649676.1| - 5.3e-06 26.3 36.5 0.0078 16.4 1.9 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296242189|ref|YP_003649676.1| - 0.00034 20.5 24.0 0.00072 19.5 7.3 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296242189|ref|YP_003649676.1| - 0.0011 19.2 25.5 0.029 14.7 1.5 4.0 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296242189|ref|YP_003649676.1| - 0.0013 19.2 0.8 0.0013 19.2 0.6 3.9 4 0 0 4 4 4 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|296242189|ref|YP_003649676.1| - 0.0036 17.7 38.6 0.0072 16.8 3.3 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_13 PF13370.1 gi|296242189|ref|YP_003649676.1| - 0.059 13.7 2.0 0.059 13.7 1.4 3.6 4 1 1 5 5 4 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|296242189|ref|YP_003649676.1| - 0.076 13.4 2.8 0.076 13.4 1.9 3.8 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242189|ref|YP_003649676.1| - 1.2 9.9 27.8 0.45 11.2 0.3 4.0 2 1 3 5 5 5 0 4Fe-4S double cluster binding domain Band_7 PF01145.20 gi|296242190|ref|YP_003649677.1| - 1.4e-34 119.5 0.4 1.9e-34 119.1 0.2 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|296242190|ref|YP_003649677.1| - 0.00023 20.7 0.0 0.00037 20.0 0.0 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.13 gi|296242191|ref|YP_003649678.1| - 2.7e-22 79.4 3.8 2.7e-22 79.4 2.7 2.7 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|296242191|ref|YP_003649678.1| - 0.0011 18.6 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 Clp protease SDH_sah PF01972.11 gi|296242191|ref|YP_003649678.1| - 0.011 14.5 0.3 0.023 13.4 0.0 1.6 2 0 0 2 2 2 0 Serine dehydrogenase proteinase Adeno_E3_14_5 PF04834.7 gi|296242191|ref|YP_003649678.1| - 0.13 12.6 1.4 0.36 11.2 0.0 2.5 3 0 0 3 3 3 0 Early E3 14.5 kDa protein AFOR_N PF02730.10 gi|296242192|ref|YP_003649679.1| - 1.1e-26 93.4 0.0 1.8e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|296242192|ref|YP_003649679.1| - 6.7e-13 48.0 0.0 1.9e-12 46.5 0.0 1.7 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 tRNA-synt_1d PF00750.14 gi|296242193|ref|YP_003649680.1| - 1.1e-39 136.2 1.8 1.9e-19 69.6 0.8 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|296242193|ref|YP_003649680.1| - 1.3e-17 63.8 0.7 4.7e-17 62.0 0.2 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|296242193|ref|YP_003649680.1| - 0.0011 19.4 0.0 0.0075 16.7 0.0 2.5 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.14 gi|296242193|ref|YP_003649680.1| - 0.0019 17.3 1.7 0.052 12.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain BAH PF01426.13 gi|296242193|ref|YP_003649680.1| - 0.022 14.5 0.0 0.086 12.5 0.0 2.1 2 0 0 2 2 2 0 BAH domain EamA PF00892.15 gi|296242194|ref|YP_003649681.1| - 1.4e-18 67.1 36.8 2.6e-10 40.4 9.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family Aminotran_3 PF00202.16 gi|296242195|ref|YP_003649682.1| - 3.6e-99 331.8 0.0 4.2e-99 331.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|296242195|ref|YP_003649682.1| - 0.0068 15.4 0.0 0.052 12.4 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Peptidase_M32 PF02074.10 gi|296242196|ref|YP_003649683.1| - 2.6e-193 643.1 3.9 3e-193 642.9 2.7 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase NTP_transferase PF00483.18 gi|296242197|ref|YP_003649684.1| - 2.2e-35 122.1 0.0 2.9e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|296242197|ref|YP_003649684.1| - 2.2e-10 40.8 0.0 3.2e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|296242197|ref|YP_003649684.1| - 1.6e-05 24.1 17.6 0.00013 21.2 0.9 4.2 3 2 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|296242197|ref|YP_003649684.1| - 0.0095 15.4 1.7 0.0095 15.4 1.2 3.4 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase PGM_PMM_I PF02878.11 gi|296242198|ref|YP_003649685.1| - 2e-08 33.7 0.0 3.6e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|296242198|ref|YP_003649685.1| - 0.046 14.0 0.0 0.1 12.9 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ABC_tran PF00005.22 gi|296242199|ref|YP_003649686.1| - 5.3e-43 146.6 0.0 2.9e-20 72.9 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|296242199|ref|YP_003649686.1| - 2.9e-29 102.9 7.0 3.4e-09 37.0 0.0 4.1 2 2 2 4 4 4 4 AAA domain SMC_N PF02463.14 gi|296242199|ref|YP_003649686.1| - 3.1e-14 52.7 0.0 1.6e-06 27.5 0.0 3.4 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|296242199|ref|YP_003649686.1| - 1.3e-13 50.8 0.7 0.019 14.0 0.0 4.1 3 1 1 4 4 4 4 AAA ATPase domain AAA_25 PF13481.1 gi|296242199|ref|YP_003649686.1| - 6.5e-09 35.4 0.3 0.0019 17.6 0.1 2.6 3 0 0 3 3 2 2 AAA domain AAA_29 PF13555.1 gi|296242199|ref|YP_003649686.1| - 2.7e-08 33.2 1.5 0.0022 17.4 0.2 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|296242199|ref|YP_003649686.1| - 6.3e-08 32.8 0.3 0.0096 16.0 0.0 3.4 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|296242199|ref|YP_003649686.1| - 2.1e-07 31.1 0.1 0.0069 16.3 0.0 2.6 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|296242199|ref|YP_003649686.1| - 3.6e-07 30.7 5.6 0.0061 16.8 0.2 2.6 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|296242199|ref|YP_003649686.1| - 4.1e-06 26.4 0.8 0.019 14.7 0.0 2.6 2 0 0 2 2 2 2 Part of AAA domain T2SE PF00437.15 gi|296242199|ref|YP_003649686.1| - 1.1e-05 24.4 0.1 0.0047 15.8 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein NACHT PF05729.7 gi|296242199|ref|YP_003649686.1| - 1.6e-05 24.5 3.3 0.057 13.0 0.1 2.9 2 0 0 2 2 2 2 NACHT domain FtsK_SpoIIIE PF01580.13 gi|296242199|ref|YP_003649686.1| - 2.5e-05 23.8 0.4 0.023 14.1 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|296242199|ref|YP_003649686.1| - 3.9e-05 23.3 0.6 0.26 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|296242199|ref|YP_003649686.1| - 5.4e-05 22.7 2.3 0.073 12.4 0.0 2.6 2 1 0 2 2 2 2 AAA-like domain DUF258 PF03193.11 gi|296242199|ref|YP_003649686.1| - 6.9e-05 22.0 0.2 0.2 10.8 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|296242199|ref|YP_003649686.1| - 9.7e-05 22.2 0.0 0.023 14.5 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|296242199|ref|YP_003649686.1| - 0.00034 20.5 0.2 0.82 9.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|296242199|ref|YP_003649686.1| - 0.00039 20.0 0.7 0.54 9.8 0.1 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_30 PF13604.1 gi|296242199|ref|YP_003649686.1| - 0.00051 19.6 0.1 0.26 10.8 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|296242199|ref|YP_003649686.1| - 0.00052 19.7 0.7 2.6 7.7 0.1 3.3 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|296242199|ref|YP_003649686.1| - 0.00085 19.8 0.0 0.66 10.4 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein MobB PF03205.9 gi|296242199|ref|YP_003649686.1| - 0.0013 18.4 0.9 0.36 10.5 0.0 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Pox_A32 PF04665.7 gi|296242199|ref|YP_003649686.1| - 0.0013 18.0 2.1 0.068 12.4 0.2 2.4 2 0 0 2 2 2 1 Poxvirus A32 protein ArgK PF03308.11 gi|296242199|ref|YP_003649686.1| - 0.0015 17.4 0.2 0.62 8.7 0.0 2.4 2 0 0 2 2 2 1 ArgK protein G-alpha PF00503.15 gi|296242199|ref|YP_003649686.1| - 0.002 16.8 0.4 1.1 7.8 0.1 2.2 2 0 0 2 2 2 2 G-protein alpha subunit AAA PF00004.24 gi|296242199|ref|YP_003649686.1| - 0.0026 17.9 2.3 0.47 10.6 0.1 3.5 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|296242199|ref|YP_003649686.1| - 0.0029 17.9 0.3 0.91 9.8 0.0 2.9 3 0 0 3 3 2 1 AAA domain PduV-EutP PF10662.4 gi|296242199|ref|YP_003649686.1| - 0.0035 16.8 2.0 5.8 6.3 0.0 3.3 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation KaiC PF06745.8 gi|296242199|ref|YP_003649686.1| - 0.0039 16.3 2.3 0.31 10.1 0.0 3.6 4 0 0 4 4 4 1 KaiC Arch_ATPase PF01637.13 gi|296242199|ref|YP_003649686.1| - 0.0053 16.4 7.1 0.25 11.0 0.1 3.4 3 2 0 3 3 3 1 Archaeal ATPase cobW PF02492.14 gi|296242199|ref|YP_003649686.1| - 0.0058 16.0 6.1 0.15 11.5 0.1 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.17 gi|296242199|ref|YP_003649686.1| - 0.0058 16.0 1.1 2.5 7.5 0.1 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|296242199|ref|YP_003649686.1| - 0.0098 15.4 0.4 2.5 7.5 0.0 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein STAS PF01740.16 gi|296242199|ref|YP_003649686.1| - 0.012 14.9 0.0 5.7 6.3 0.0 2.6 2 1 0 2 2 2 0 STAS domain IstB_IS21 PF01695.12 gi|296242199|ref|YP_003649686.1| - 0.015 14.6 0.1 6.2 6.2 0.0 3.2 3 0 0 3 3 3 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|296242199|ref|YP_003649686.1| - 0.016 14.0 0.0 0.54 9.0 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.1 gi|296242199|ref|YP_003649686.1| - 0.022 15.6 5.6 0.11 13.2 0.2 3.1 2 2 0 2 2 2 0 AAA domain PRK PF00485.13 gi|296242199|ref|YP_003649686.1| - 0.024 14.1 0.0 7.9 5.9 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.1 gi|296242199|ref|YP_003649686.1| - 0.027 14.3 0.0 1.3 9.0 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit NTPase_1 PF03266.10 gi|296242199|ref|YP_003649686.1| - 0.027 14.1 3.0 2.6 7.7 0.1 3.1 3 0 0 3 3 3 0 NTPase Mg_chelatase PF01078.16 gi|296242199|ref|YP_003649686.1| - 0.035 13.2 0.1 2.4 7.2 0.0 2.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|296242199|ref|YP_003649686.1| - 0.035 14.2 0.1 5.4 7.2 0.0 2.6 2 0 0 2 2 2 0 RNA helicase PhoH PF02562.11 gi|296242199|ref|YP_003649686.1| - 0.066 12.4 0.0 4.3 6.5 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein DUF3584 PF12128.3 gi|296242199|ref|YP_003649686.1| - 0.076 10.3 0.2 0.12 9.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Zeta_toxin PF06414.7 gi|296242199|ref|YP_003649686.1| - 0.091 11.8 0.0 12 4.9 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin MutS_V PF00488.16 gi|296242199|ref|YP_003649686.1| - 0.13 11.6 0.4 7.6 5.8 0.1 2.8 2 1 0 3 3 3 0 MutS domain V MMR_HSR1 PF01926.18 gi|296242199|ref|YP_003649686.1| - 0.14 12.0 1.7 7.4 6.5 0.0 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase DLIC PF05783.6 gi|296242199|ref|YP_003649686.1| - 0.15 10.7 0.1 7 5.2 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) DUF2146 PF10220.4 gi|296242199|ref|YP_003649686.1| - 0.17 9.7 0.0 0.29 9.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2146) AAA_13 PF13166.1 gi|296242199|ref|YP_003649686.1| - 0.3 9.4 1.8 1.9 6.8 0.1 2.7 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|296242199|ref|YP_003649686.1| - 0.34 10.8 4.5 0.44 10.4 0.1 2.7 3 0 0 3 3 2 0 AAA domain CbiQ PF02361.11 gi|296242200|ref|YP_003649687.1| - 2.1e-08 34.0 14.1 2.6e-08 33.7 9.8 1.1 1 0 0 1 1 1 1 Cobalt transport protein DUF4063 PF13272.1 gi|296242200|ref|YP_003649687.1| - 0.23 11.3 4.0 0.38 10.5 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4063) ABC_cobalt PF09819.4 gi|296242201|ref|YP_003649688.1| - 1.5e-32 112.2 7.2 1.5e-32 112.2 5.0 1.6 2 0 0 2 2 2 1 ABC-type cobalt transport system, permease component DUF373 PF04123.8 gi|296242201|ref|YP_003649688.1| - 0.52 9.2 7.0 0.86 8.5 4.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF373) ATP_bind_3 PF01171.15 gi|296242202|ref|YP_003649689.1| - 1.3e-13 50.8 0.0 8e-13 48.2 0.0 1.9 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|296242202|ref|YP_003649689.1| - 0.046 13.5 0.0 0.082 12.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family YyzF PF14116.1 gi|296242202|ref|YP_003649689.1| - 0.27 11.2 3.0 1.9 8.5 0.1 3.2 3 0 0 3 3 3 0 YyzF-like protein zf-C4_ClpX PF06689.8 gi|296242202|ref|YP_003649689.1| - 4.1 6.9 8.1 1.3 8.5 0.0 3.1 3 0 0 3 3 3 0 ClpX C4-type zinc finger SNARE_assoc PF09335.6 gi|296242203|ref|YP_003649690.1| - 1.2e-11 44.8 4.8 1.2e-11 44.8 3.3 2.5 2 1 1 3 3 3 1 SNARE associated Golgi protein MS_channel PF00924.13 gi|296242204|ref|YP_003649691.1| - 1.4e-14 53.9 10.2 1.4e-14 53.9 7.1 2.9 2 1 1 3 3 3 1 Mechanosensitive ion channel PIG-P PF08510.7 gi|296242204|ref|YP_003649691.1| - 0.24 11.0 6.0 0.43 10.2 4.2 1.3 1 0 0 1 1 1 0 PIG-P PT-VENN PF04829.8 gi|296242204|ref|YP_003649691.1| - 0.34 10.4 6.2 0.77 9.3 4.3 1.5 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif DUF3482 PF11981.3 gi|296242204|ref|YP_003649691.1| - 0.68 9.1 3.1 0.95 8.6 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Scs3p PF10261.4 gi|296242204|ref|YP_003649691.1| - 2.8 6.9 7.2 0.23 10.4 0.8 1.9 1 1 1 2 2 2 0 Inositol phospholipid synthesis and fat-storage-inducing TM COX2_TM PF02790.10 gi|296242204|ref|YP_003649691.1| - 4.1 7.4 7.7 0.39 10.6 0.6 2.2 1 1 1 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain DSPc PF00782.15 gi|296242206|ref|YP_003649693.1| - 1.4e-12 47.3 0.0 7.2e-12 45.0 0.0 1.9 2 0 0 2 2 2 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|296242206|ref|YP_003649693.1| - 6.2e-05 22.4 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.7 gi|296242206|ref|YP_003649693.1| - 0.0013 18.2 0.5 0.0035 16.8 0.1 2.0 2 2 0 2 2 2 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) HEM4 PF02602.10 gi|296242206|ref|YP_003649693.1| - 0.087 12.0 0.0 0.24 10.5 0.0 1.7 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD Y_phosphatase3 PF13350.1 gi|296242206|ref|YP_003649693.1| - 0.11 12.7 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 Tyrosine phosphatase family AIRS PF00586.19 gi|296242207|ref|YP_003649694.1| - 3.5e-10 39.9 0.0 9.4e-10 38.6 0.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Polysacc_synt PF01943.12 gi|296242208|ref|YP_003649695.1| - 2.1e-19 69.8 28.1 2.1e-19 69.8 19.5 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|296242208|ref|YP_003649695.1| - 5.1e-12 45.8 25.4 5.1e-12 45.8 17.6 3.1 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|296242208|ref|YP_003649695.1| - 2.9e-06 27.1 39.1 6.2e-05 22.8 16.5 3.8 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MoeA_N PF03453.12 gi|296242209|ref|YP_003649696.1| - 3.4e-42 143.5 0.1 5.8e-42 142.7 0.1 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|296242209|ref|YP_003649696.1| - 1.3e-26 92.7 0.0 2.3e-26 91.8 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|296242209|ref|YP_003649696.1| - 4.7e-16 58.4 0.0 2e-15 56.5 0.0 2.1 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Radical_SAM PF04055.16 gi|296242210|ref|YP_003649697.1| - 2.2e-24 86.4 0.0 6e-24 85.0 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|296242210|ref|YP_003649697.1| - 8.1e-07 28.9 0.1 2.6e-06 27.3 0.1 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Fe-ADH PF00465.14 gi|296242211|ref|YP_003649698.1| - 3.2e-81 272.8 0.0 3.8e-81 272.5 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|296242211|ref|YP_003649698.1| - 2.7e-12 46.5 0.3 1.1e-07 31.3 0.0 2.3 2 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase Met_synt_B12 PF02965.12 gi|296242211|ref|YP_003649698.1| - 0.053 12.7 0.1 0.24 10.5 0.0 2.0 3 0 0 3 3 3 0 Vitamin B12 dependent methionine synthase, activation domain PA28_alpha PF02251.13 gi|296242211|ref|YP_003649698.1| - 0.084 13.0 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 Proteasome activator pa28 alpha subunit Glyco_tranf_2_3 PF13641.1 gi|296242212|ref|YP_003649699.1| - 3.5e-23 82.6 0.0 5e-23 82.1 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|296242212|ref|YP_003649699.1| - 2.8e-21 76.1 0.2 4.1e-21 75.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|296242212|ref|YP_003649699.1| - 6.4e-06 25.5 0.0 6.1e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|296242212|ref|YP_003649699.1| - 0.0094 15.6 0.4 0.023 14.3 0.1 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_4 PF13704.1 gi|296242212|ref|YP_003649699.1| - 0.028 14.7 0.0 0.067 13.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 DNA_pol_B PF00136.16 gi|296242215|ref|YP_003649702.1| - 1.3e-25 90.1 0.0 1.9e-25 89.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DUF2258 PF10015.4 gi|296242216|ref|YP_003649703.1| - 3.9e-17 61.8 0.2 3.9e-17 61.8 0.2 2.1 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) Inhibitor_I48 PF10467.4 gi|296242216|ref|YP_003649703.1| - 0.036 13.9 0.2 0.083 12.8 0.1 1.5 2 0 0 2 2 2 0 Peptidase inhibitor clitocypin AF0941-like PF14591.1 gi|296242216|ref|YP_003649703.1| - 0.046 13.7 0.5 0.046 13.7 0.4 1.9 2 0 0 2 2 2 0 AF0941-like CcdA PF07362.7 gi|296242216|ref|YP_003649703.1| - 0.054 13.3 0.5 0.24 11.2 0.1 2.1 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA DUF4364 PF14277.1 gi|296242216|ref|YP_003649703.1| - 0.066 12.8 2.1 2.3 7.8 0.0 2.9 1 1 1 3 3 3 0 Domain of unknown function (DUF4364) DUF384 PF04064.8 gi|296242216|ref|YP_003649703.1| - 0.34 10.5 1.7 1.2 8.7 0.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF384) OsmC PF02566.14 gi|296242217|ref|YP_003649704.1| - 1.6e-15 57.0 0.1 3.6e-15 55.9 0.0 1.5 2 0 0 2 2 2 1 OsmC-like protein Acid_PPase PF12689.2 gi|296242219|ref|YP_003649706.1| - 2.2e-09 37.1 0.0 2.6e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Acid Phosphatase NIF PF03031.13 gi|296242219|ref|YP_003649706.1| - 0.027 14.1 0.1 0.033 13.8 0.1 1.2 1 0 0 1 1 1 0 NLI interacting factor-like phosphatase Hydrolase_3 PF08282.7 gi|296242219|ref|YP_003649706.1| - 0.11 12.0 0.0 0.24 10.9 0.0 1.6 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|296242219|ref|YP_003649706.1| - 0.11 12.8 0.2 6.6 7.0 0.2 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|296242219|ref|YP_003649706.1| - 0.13 12.4 0.6 1.6 8.8 0.0 2.5 1 1 2 3 3 3 0 Haloacid dehalogenase-like hydrolase PmbA_TldD PF01523.11 gi|296242220|ref|YP_003649707.1| - 4.8e-44 150.7 0.0 6.1e-44 150.4 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|296242221|ref|YP_003649708.1| - 9.1e-57 192.5 0.6 1.1e-56 192.2 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Chromate_transp PF02417.10 gi|296242222|ref|YP_003649709.1| - 5.1e-45 153.1 14.1 5.8e-45 152.9 9.7 1.0 1 0 0 1 1 1 1 Chromate transporter PSRP-3_Ycf65 PF04839.8 gi|296242222|ref|YP_003649709.1| - 0.098 12.7 0.3 9.6 6.3 0.0 2.2 2 0 0 2 2 2 0 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) TctB PF07331.6 gi|296242222|ref|YP_003649709.1| - 0.47 10.0 12.2 0.95 9.1 8.3 1.6 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF872 PF05915.7 gi|296242222|ref|YP_003649709.1| - 0.5 10.2 3.0 0.63 9.9 1.4 1.6 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) FUSC_2 PF13515.1 gi|296242222|ref|YP_003649709.1| - 4.5 7.2 13.1 3.3 7.6 4.9 2.1 1 1 1 2 2 2 0 Fusaric acid resistance protein-like HAD_2 PF13419.1 gi|296242223|ref|YP_003649710.1| - 3.1e-11 43.7 0.1 6.1e-10 39.5 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|296242223|ref|YP_003649710.1| - 2.7e-05 24.6 1.0 0.002 18.5 0.0 2.1 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|296242223|ref|YP_003649710.1| - 0.00011 22.4 0.0 0.00016 21.8 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|296242223|ref|YP_003649710.1| - 0.0012 18.2 0.1 0.054 12.8 0.0 2.2 2 0 0 2 2 2 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.1 gi|296242223|ref|YP_003649710.1| - 0.002 18.0 0.0 0.013 15.3 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|296242223|ref|YP_003649710.1| - 0.0031 17.1 1.6 0.024 14.2 1.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|296242223|ref|YP_003649710.1| - 0.011 15.3 0.1 0.13 11.9 0.0 2.1 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase DUF960 PF06124.6 gi|296242223|ref|YP_003649710.1| - 0.086 13.0 0.1 0.13 12.5 0.1 1.3 1 0 0 1 1 1 0 Staphylococcal protein of unknown function (DUF960) Asparaginase_2 PF01112.13 gi|296242224|ref|YP_003649711.1| - 1.5e-65 221.0 0.0 2e-65 220.6 0.0 1.1 1 0 0 1 1 1 1 Asparaginase dCMP_cyt_deam_1 PF00383.17 gi|296242224|ref|YP_003649711.1| - 0.013 15.1 0.2 1.6 8.4 0.0 2.9 3 0 0 3 3 3 0 Cytidine and deoxycytidylate deaminase zinc-binding region DUF95 PF01944.12 gi|296242225|ref|YP_003649712.1| - 0.0054 16.3 20.4 0.0054 16.3 14.1 3.9 2 1 1 3 3 3 1 Integral membrane protein DUF95 DUF2636 PF11120.3 gi|296242225|ref|YP_003649712.1| - 1.8 8.1 4.8 3.4 7.2 0.3 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2636) ROK PF00480.15 gi|296242226|ref|YP_003649713.1| - 6.5e-33 114.0 0.2 9.9e-33 113.4 0.1 1.3 1 0 0 1 1 1 1 ROK family tRNA-synt_1g PF09334.6 gi|296242227|ref|YP_003649714.1| - 2.4e-110 368.8 0.7 8.5e-109 363.7 0.5 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|296242227|ref|YP_003649714.1| - 4.1e-23 81.2 0.3 1.5e-10 39.7 0.3 4.0 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|296242227|ref|YP_003649714.1| - 8.6e-10 38.2 0.5 4.8e-06 25.8 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|296242227|ref|YP_003649714.1| - 8.8e-06 24.6 0.0 0.0002 20.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|296242227|ref|YP_003649714.1| - 0.00023 20.1 0.0 0.85 8.3 0.0 3.1 3 1 1 4 4 4 2 tRNA synthetases class I (R) Anticodon_1 PF08264.8 gi|296242227|ref|YP_003649714.1| - 0.011 15.4 0.0 0.037 13.7 0.0 1.9 2 0 0 2 2 2 0 Anticodon-binding domain of tRNA IF2_N PF04760.10 gi|296242227|ref|YP_003649714.1| - 0.027 14.1 0.0 0.2 11.3 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region LIM PF00412.17 gi|296242227|ref|YP_003649714.1| - 0.13 12.3 0.3 0.26 11.3 0.2 1.5 1 0 0 1 1 1 0 LIM domain Radical_SAM PF04055.16 gi|296242228|ref|YP_003649715.1| - 4.6e-18 65.9 0.0 1.7e-16 60.8 0.0 2.5 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|296242228|ref|YP_003649715.1| - 0.0014 18.4 0.0 0.11 12.3 0.0 2.4 2 0 0 2 2 2 2 B12 binding domain MarR_2 PF12802.2 gi|296242230|ref|YP_003649717.1| - 9.2e-06 25.2 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|296242230|ref|YP_003649717.1| - 9.3e-05 21.9 0.8 0.00034 20.1 0.2 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|296242230|ref|YP_003649717.1| - 0.00022 20.9 0.5 0.00083 19.1 0.0 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|296242230|ref|YP_003649717.1| - 0.0016 18.7 0.0 0.0032 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.6 gi|296242230|ref|YP_003649717.1| - 0.0018 18.2 0.1 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein HTH_5 PF01022.15 gi|296242230|ref|YP_003649717.1| - 0.0027 17.3 0.2 0.0027 17.3 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|296242230|ref|YP_003649717.1| - 0.005 16.5 0.0 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|296242230|ref|YP_003649717.1| - 0.0067 16.1 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2582 PF10771.4 gi|296242230|ref|YP_003649717.1| - 0.048 13.5 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) HTH_34 PF13601.1 gi|296242230|ref|YP_003649717.1| - 0.071 13.1 0.1 0.12 12.3 0.1 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|296242230|ref|YP_003649717.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Cyclin_C PF02984.14 gi|296242230|ref|YP_003649717.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 1 0 1 1 1 0 Cyclin, C-terminal domain NikR_C PF08753.6 gi|296242233|ref|YP_003649720.1| - 5.8e-24 83.7 0.9 9.2e-24 83.1 0.7 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain GAF_2 PF13185.1 gi|296242233|ref|YP_003649720.1| - 0.017 15.6 0.0 0.02 15.3 0.0 1.2 1 0 0 1 1 1 0 GAF domain SUD-M PF11633.3 gi|296242234|ref|YP_003649721.1| - 0.022 14.0 0.0 0.55 9.4 0.0 2.2 2 0 0 2 2 2 0 Single-stranded poly(A) binding domain AGT PF11440.3 gi|296242234|ref|YP_003649721.1| - 0.096 11.5 0.0 0.19 10.5 0.0 1.5 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase Fe_dep_repr_C PF02742.10 gi|296242235|ref|YP_003649722.1| - 1.1e-15 57.0 0.1 2e-15 56.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|296242235|ref|YP_003649722.1| - 8.4e-15 54.4 0.2 2.9e-14 52.7 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|296242235|ref|YP_003649722.1| - 1.6e-09 37.3 0.0 3.6e-09 36.1 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|296242235|ref|YP_003649722.1| - 5.7e-09 35.5 0.0 1.2e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|296242235|ref|YP_003649722.1| - 1.8e-08 33.6 0.1 3.2e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|296242235|ref|YP_003649722.1| - 5.6e-07 29.1 0.0 9.7e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|296242235|ref|YP_003649722.1| - 1.1e-06 28.2 0.3 3.6e-06 26.6 0.1 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|296242235|ref|YP_003649722.1| - 1.8e-06 28.1 0.0 3.8e-06 27.1 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|296242235|ref|YP_003649722.1| - 2.3e-06 27.0 0.0 4.5e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|296242235|ref|YP_003649722.1| - 3.9e-06 26.5 0.0 8.4e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|296242235|ref|YP_003649722.1| - 4.8e-06 26.3 0.2 6.7e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.11 gi|296242235|ref|YP_003649722.1| - 5.9e-06 25.7 0.1 1.5e-05 24.4 0.1 1.7 1 0 0 1 1 1 1 LexA DNA binding domain HTH_23 PF13384.1 gi|296242235|ref|YP_003649722.1| - 7.6e-06 25.4 0.0 5.5e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_45 PF14947.1 gi|296242235|ref|YP_003649722.1| - 3.9e-05 23.3 0.2 6.2e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix GntR PF00392.16 gi|296242235|ref|YP_003649722.1| - 4.8e-05 22.7 0.1 9.8e-05 21.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|296242235|ref|YP_003649722.1| - 7.9e-05 22.2 0.1 0.00013 21.5 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|296242235|ref|YP_003649722.1| - 9.5e-05 22.4 0.1 0.00037 20.5 0.0 2.0 2 1 1 3 3 2 1 Transcriptional regulator Penicillinase_R PF03965.11 gi|296242235|ref|YP_003649722.1| - 0.00016 21.7 0.1 0.00021 21.3 0.0 1.5 1 1 0 1 1 1 1 Penicillinase repressor HTH_CodY PF08222.6 gi|296242235|ref|YP_003649722.1| - 0.00032 19.9 0.0 0.0005 19.3 0.0 1.4 1 0 0 1 1 1 1 CodY helix-turn-helix domain TFIIE_alpha PF02002.12 gi|296242235|ref|YP_003649722.1| - 0.00039 19.8 0.4 0.00069 19.0 0.2 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_38 PF13936.1 gi|296242235|ref|YP_003649722.1| - 0.0005 19.5 0.0 0.0014 18.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain IF2_N PF04760.10 gi|296242235|ref|YP_003649722.1| - 0.00073 19.1 0.5 0.012 15.2 0.0 2.6 3 0 0 3 3 2 1 Translation initiation factor IF-2, N-terminal region HTH_20 PF12840.2 gi|296242235|ref|YP_003649722.1| - 0.00095 18.9 0.0 0.0018 18.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|296242235|ref|YP_003649722.1| - 0.0012 18.4 0.0 0.003 17.0 0.0 1.7 1 1 0 1 1 1 1 HTH DNA binding domain HTH_6 PF01418.12 gi|296242235|ref|YP_003649722.1| - 0.0013 18.3 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain, rpiR family Sigma70_r4_2 PF08281.7 gi|296242235|ref|YP_003649722.1| - 0.0018 17.6 0.0 0.0037 16.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|296242235|ref|YP_003649722.1| - 0.0023 17.9 0.0 0.012 15.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|296242235|ref|YP_003649722.1| - 0.0025 17.2 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_40 PF14493.1 gi|296242235|ref|YP_003649722.1| - 0.0048 17.0 0.0 0.052 13.7 0.0 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.1 gi|296242235|ref|YP_003649722.1| - 0.0049 16.9 0.0 0.011 15.8 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn helix FeoC PF09012.5 gi|296242235|ref|YP_003649722.1| - 0.0088 15.7 0.1 0.015 14.9 0.0 1.6 1 1 0 1 1 1 1 FeoC like transcriptional regulator HTH_17 PF12728.2 gi|296242235|ref|YP_003649722.1| - 0.011 16.0 0.1 0.023 14.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.11 gi|296242235|ref|YP_003649722.1| - 0.012 15.6 0.1 0.023 14.7 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain HTH_36 PF13730.1 gi|296242235|ref|YP_003649722.1| - 0.019 15.0 0.1 0.051 13.7 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain MerR PF00376.18 gi|296242235|ref|YP_003649722.1| - 0.02 14.4 0.4 0.21 11.1 0.3 2.3 1 1 0 1 1 1 0 MerR family regulatory protein Mrr_N PF14338.1 gi|296242235|ref|YP_003649722.1| - 0.023 14.7 0.2 0.12 12.4 0.0 2.0 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_22 PF13309.1 gi|296242235|ref|YP_003649722.1| - 0.024 14.4 0.6 5.2 6.9 0.1 2.9 1 1 2 3 3 3 0 HTH domain HTH_37 PF13744.1 gi|296242235|ref|YP_003649722.1| - 0.029 14.1 0.0 0.5 10.1 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|296242235|ref|YP_003649722.1| - 0.04 13.4 0.0 0.13 11.7 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.22 gi|296242235|ref|YP_003649722.1| - 0.053 13.2 0.0 0.14 11.9 0.0 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Terminase_5 PF06056.7 gi|296242235|ref|YP_003649722.1| - 0.056 12.9 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) MerR_1 PF13411.1 gi|296242235|ref|YP_003649722.1| - 0.061 13.0 0.1 0.46 10.2 0.0 2.4 2 1 1 3 3 3 0 MerR HTH family regulatory protein TetR_N PF00440.18 gi|296242235|ref|YP_003649722.1| - 0.067 12.8 0.0 0.39 10.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family ANT PF03374.9 gi|296242235|ref|YP_003649722.1| - 0.073 13.1 0.1 1.2 9.2 0.0 2.3 1 1 1 2 2 2 0 Phage antirepressor protein KilAC domain HTH_11 PF08279.7 gi|296242235|ref|YP_003649722.1| - 0.075 12.6 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain EAP30 PF04157.11 gi|296242235|ref|YP_003649722.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Topoisom_bac PF01131.15 gi|296242235|ref|YP_003649722.1| - 0.11 11.2 0.0 0.13 11.0 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HxlR PF01638.12 gi|296242235|ref|YP_003649722.1| - 0.11 12.0 0.1 0.2 11.3 0.1 1.4 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Thioredoxin_3 PF13192.1 gi|296242236|ref|YP_003649723.1| - 1.1e-08 34.8 0.5 1.9e-07 30.7 0.2 2.4 2 1 0 2 2 2 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|296242236|ref|YP_003649723.1| - 7e-06 25.6 0.0 1.8e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|296242236|ref|YP_003649723.1| - 0.00019 21.3 0.9 0.00035 20.4 0.1 1.8 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin_2 PF13098.1 gi|296242236|ref|YP_003649723.1| - 0.0027 17.8 0.5 0.62 10.2 0.6 2.9 2 1 0 2 2 2 1 Thioredoxin-like domain DUF836 PF05768.9 gi|296242236|ref|YP_003649723.1| - 0.013 15.7 0.1 0.52 10.6 0.0 2.3 2 0 0 2 2 2 0 Glutaredoxin-like domain (DUF836) Thioredoxin PF00085.15 gi|296242236|ref|YP_003649723.1| - 0.082 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin HTH_45 PF14947.1 gi|296242237|ref|YP_003649724.1| - 1.2e-07 31.3 0.6 3e-07 30.1 0.4 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|296242237|ref|YP_003649724.1| - 1.1e-05 25.3 0.2 5.1e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator DUF4423 PF14394.1 gi|296242237|ref|YP_003649724.1| - 0.00093 18.7 0.1 0.1 12.1 0.0 2.4 1 1 0 2 2 2 1 Domain of unknown function (DUF4423) Ribosomal_S19e PF01090.14 gi|296242237|ref|YP_003649724.1| - 0.0014 18.0 0.0 0.0026 17.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S19e HSBP1 PF06825.7 gi|296242237|ref|YP_003649724.1| - 0.0035 16.8 0.6 0.0093 15.5 0.4 1.7 1 0 0 1 1 1 1 Heat shock factor binding protein 1 DUF4364 PF14277.1 gi|296242237|ref|YP_003649724.1| - 0.0057 16.2 1.9 0.011 15.3 1.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) Mnd1 PF03962.10 gi|296242237|ref|YP_003649724.1| - 0.0078 15.8 4.3 0.031 13.9 3.1 1.8 1 1 1 2 2 2 1 Mnd1 family HTH_27 PF13463.1 gi|296242237|ref|YP_003649724.1| - 0.0092 16.2 0.0 0.066 13.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF4011 PF13195.1 gi|296242237|ref|YP_003649724.1| - 0.012 15.6 1.3 0.017 15.1 0.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4011) DUF342 PF03961.8 gi|296242237|ref|YP_003649724.1| - 0.014 13.8 1.3 0.018 13.5 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) HTH_IclR PF09339.5 gi|296242237|ref|YP_003649724.1| - 0.015 14.8 0.0 0.071 12.7 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain V_ATPase_I PF01496.14 gi|296242237|ref|YP_003649724.1| - 0.031 12.1 3.8 0.043 11.6 2.7 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DivIVA PF05103.8 gi|296242237|ref|YP_003649724.1| - 0.033 14.2 4.1 0.06 13.3 2.9 1.3 1 0 0 1 1 1 0 DivIVA protein Adeno_PIX PF03955.9 gi|296242237|ref|YP_003649724.1| - 0.052 14.0 0.2 0.095 13.2 0.2 1.5 1 0 0 1 1 1 0 Adenovirus hexon-associated protein (IX) FaeA PF04703.7 gi|296242237|ref|YP_003649724.1| - 0.062 13.4 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein MotA_activ PF09114.5 gi|296242237|ref|YP_003649724.1| - 0.08 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Transcription factor MotA, activation domain Herpes_UL25 PF01499.11 gi|296242237|ref|YP_003649724.1| - 0.15 10.3 1.5 0.2 9.9 1.0 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family Syntaxin-6_N PF09177.6 gi|296242237|ref|YP_003649724.1| - 0.31 11.4 3.5 0.63 10.4 2.4 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal APG6 PF04111.7 gi|296242237|ref|YP_003649724.1| - 0.35 9.8 4.5 0.55 9.2 3.1 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF1664 PF07889.7 gi|296242237|ref|YP_003649724.1| - 0.46 10.2 2.2 0.5 10.1 0.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Prefoldin_2 PF01920.15 gi|296242237|ref|YP_003649724.1| - 0.51 10.1 6.9 0.2 11.4 2.0 2.2 1 1 1 2 2 2 0 Prefoldin subunit DUF4349 PF14257.1 gi|296242237|ref|YP_003649724.1| - 1.3 8.1 5.7 0.34 10.1 0.7 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) ParBc PF02195.13 gi|296242238|ref|YP_003649725.1| - 1.4e-08 34.6 0.0 0.0025 17.8 0.0 2.4 2 0 0 2 2 2 2 ParB-like nuclease domain ParBc_2 PF08857.6 gi|296242238|ref|YP_003649725.1| - 0.00083 19.2 0.3 0.95 9.2 0.0 3.1 2 1 1 3 3 3 2 Putative ParB-like nuclease Wyosine_form PF08608.7 gi|296242239|ref|YP_003649726.1| - 6.4e-19 67.8 0.0 1.2e-18 66.9 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.16 gi|296242239|ref|YP_003649726.1| - 4.8e-18 65.8 0.1 2.9e-17 63.3 0.1 2.1 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|296242239|ref|YP_003649726.1| - 0.027 14.5 0.0 0.11 12.4 0.0 2.1 2 1 0 2 2 2 0 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|296242239|ref|YP_003649726.1| - 0.071 13.3 0.0 0.49 10.6 0.0 2.1 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase FMN_red PF03358.10 gi|296242240|ref|YP_003649727.1| - 1.8e-25 89.2 0.0 2.4e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|296242240|ref|YP_003649727.1| - 7.6e-15 54.9 0.0 1.4e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin-like fold DUF357 PF04010.8 gi|296242241|ref|YP_003649728.1| - 1e-19 69.9 1.1 1.7e-19 69.2 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|296242241|ref|YP_003649728.1| - 1.2e-06 28.7 0.0 2e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|296242241|ref|YP_003649728.1| - 0.1 12.2 0.0 0.48 10.0 0.0 2.1 1 1 1 2 2 2 0 FAD synthetase Orn_Arg_deC_N PF02784.11 gi|296242242|ref|YP_003649729.1| - 2.4e-32 112.1 0.0 3.6e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|296242242|ref|YP_003649729.1| - 4.7e-16 58.5 0.0 1.3e-15 57.1 0.0 1.8 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Radical_SAM PF04055.16 gi|296242243|ref|YP_003649730.1| - 1.1e-20 74.4 0.0 4.8e-19 69.1 0.0 2.8 2 1 1 3 3 3 1 Radical SAM superfamily HypD PF01924.11 gi|296242244|ref|YP_003649731.1| - 2e-128 428.1 0.0 2.7e-128 427.7 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family zf-RING_6 PF14835.1 gi|296242244|ref|YP_003649731.1| - 0.027 14.2 0.0 0.086 12.6 0.0 1.9 1 0 0 1 1 1 0 zf-RING of BARD1-type protein NTP_transf_3 PF12804.2 gi|296242245|ref|YP_003649732.1| - 2.7e-29 102.3 0.0 3.2e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|296242245|ref|YP_003649732.1| - 1.1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|296242245|ref|YP_003649732.1| - 1.7e-05 24.5 0.0 2.9e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transferase PF00483.18 gi|296242245|ref|YP_003649732.1| - 0.064 12.5 0.0 0.085 12.1 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase PhoU_div PF01865.11 gi|296242246|ref|YP_003649733.1| - 2e-31 108.8 9.4 2.3e-31 108.6 6.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|296242246|ref|YP_003649733.1| - 8.3e-06 26.1 5.5 0.00018 21.8 0.4 2.6 2 1 0 2 2 2 2 PhoU domain DUF3510 PF12022.3 gi|296242246|ref|YP_003649733.1| - 0.077 13.1 1.3 0.42 10.7 0.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3510) FolB PF02152.13 gi|296242246|ref|YP_003649733.1| - 0.47 10.6 3.5 3.6 7.7 0.1 2.8 1 1 2 3 3 3 0 Dihydroneopterin aldolase TrmB PF01978.14 gi|296242247|ref|YP_003649734.1| - 1.1e-05 25.0 1.5 0.00042 19.9 0.2 2.4 3 0 0 3 3 3 2 Sugar-specific transcriptional regulator TrmB CYTH PF01928.16 gi|296242247|ref|YP_003649734.1| - 0.0043 16.7 0.0 0.0054 16.4 0.0 1.2 1 0 0 1 1 1 1 CYTH domain Rrf2 PF02082.15 gi|296242247|ref|YP_003649734.1| - 0.0049 16.9 0.2 3.7 7.7 0.0 2.1 2 0 0 2 2 2 2 Transcriptional regulator RHH_1 PF01402.16 gi|296242248|ref|YP_003649735.1| - 0.16 11.8 1.9 0.19 11.6 0.2 1.9 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF211 PF02680.9 gi|296242249|ref|YP_003649736.1| - 3.8e-32 109.9 2.0 4.2e-32 109.8 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 Acetate_kinase PF00871.12 gi|296242249|ref|YP_003649736.1| - 0.01 14.4 0.0 0.011 14.2 0.0 1.0 1 0 0 1 1 1 0 Acetokinase family HMA PF00403.21 gi|296242249|ref|YP_003649736.1| - 0.021 14.9 3.9 0.12 12.5 2.7 2.0 1 1 0 1 1 1 0 Heavy-metal-associated domain NikR_C PF08753.6 gi|296242249|ref|YP_003649736.1| - 0.041 13.7 1.7 3.7 7.5 0.1 2.1 1 1 1 2 2 2 0 NikR C terminal nickel binding domain DUF3954 PF13128.1 gi|296242249|ref|YP_003649736.1| - 0.066 12.6 0.5 0.066 12.6 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) WaaY PF06176.6 gi|296242250|ref|YP_003649737.1| - 0.008 15.4 0.0 0.013 14.7 0.0 1.4 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Metallophos_2 PF12850.2 gi|296242251|ref|YP_003649738.1| - 1.4e-17 63.9 0.0 1.7e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|296242251|ref|YP_003649738.1| - 0.061 12.7 6.1 0.67 9.3 0.8 2.9 1 1 1 2 2 2 0 Calcineurin-like phosphoesterase ABC_tran PF00005.22 gi|296242252|ref|YP_003649739.1| - 1.2e-34 119.5 0.0 2.1e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242252|ref|YP_003649739.1| - 1.9e-10 41.2 0.1 2.6e-06 27.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|296242252|ref|YP_003649739.1| - 1.2e-09 38.0 0.1 1.8e-08 34.2 0.0 2.9 3 1 1 4 4 4 1 TOBE domain AAA_15 PF13175.1 gi|296242252|ref|YP_003649739.1| - 3.4e-05 23.0 0.0 0.00054 19.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.17 gi|296242252|ref|YP_003649739.1| - 0.00072 19.6 0.0 0.0013 18.8 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_23 PF13476.1 gi|296242252|ref|YP_003649739.1| - 0.0024 18.2 0.3 0.0055 17.0 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|296242252|ref|YP_003649739.1| - 0.0039 17.3 1.8 0.046 13.8 1.2 2.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|296242252|ref|YP_003649739.1| - 0.0078 16.4 0.3 0.059 13.5 0.2 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TOBE PF03459.12 gi|296242252|ref|YP_003649739.1| - 0.015 15.4 0.0 0.043 13.9 0.0 1.9 2 0 0 2 2 1 0 TOBE domain Rad17 PF03215.10 gi|296242252|ref|YP_003649739.1| - 0.019 13.6 0.0 0.028 13.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF3596 PF12167.3 gi|296242252|ref|YP_003649739.1| - 0.02 14.4 0.0 0.052 13.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3596) AAA_16 PF13191.1 gi|296242252|ref|YP_003649739.1| - 0.034 14.1 0.1 0.061 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|296242252|ref|YP_003649739.1| - 0.059 12.5 0.3 0.23 10.6 0.2 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|296242252|ref|YP_003649739.1| - 0.067 12.5 0.0 0.51 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|296242252|ref|YP_003649739.1| - 0.077 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RapA_C PF12137.3 gi|296242252|ref|YP_003649739.1| - 0.089 11.6 0.1 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase recycling family C-terminal AAA_17 PF13207.1 gi|296242252|ref|YP_003649739.1| - 0.15 12.8 0.1 0.39 11.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|296242252|ref|YP_003649739.1| - 0.16 11.4 0.0 0.35 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.17 gi|296242253|ref|YP_003649740.1| - 1e-18 67.5 38.7 2.8e-12 46.5 11.5 4.8 4 1 0 4 4 4 3 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.1 gi|296242254|ref|YP_003649741.1| - 1.2e-18 67.3 0.0 4.9e-18 65.3 0.0 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|296242254|ref|YP_003649741.1| - 3.4e-14 53.2 0.0 2.2e-13 50.6 0.0 1.9 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|296242254|ref|YP_003649741.1| - 1.8e-10 41.0 0.4 5.1e-10 39.5 0.2 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|296242254|ref|YP_003649741.1| - 6.9e-06 25.8 0.0 2.6e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF1180 PF06679.7 gi|296242254|ref|YP_003649741.1| - 0.3 10.9 2.6 0.54 10.1 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) DUF2223 PF09985.4 gi|296242255|ref|YP_003649742.1| - 2.5e-60 203.6 0.9 4.5e-60 202.8 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) ABC_transp_aux PF09822.4 gi|296242255|ref|YP_003649742.1| - 2.5e-05 23.8 0.2 0.00052 19.5 0.0 2.1 2 0 0 2 2 2 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|296242255|ref|YP_003649742.1| - 0.0042 17.2 0.0 0.024 14.8 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Metallophos PF00149.23 gi|296242256|ref|YP_003649743.1| - 2e-17 63.2 0.5 5.1e-17 61.9 0.3 1.8 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|296242256|ref|YP_003649743.1| - 5.5e-09 36.0 0.0 9.8e-09 35.2 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain MGC-24 PF05283.6 gi|296242256|ref|YP_003649743.1| - 0.0056 16.4 17.0 0.015 15.0 11.8 1.7 1 0 0 1 1 1 1 Multi-glycosylated core protein 24 (MGC-24) TMEM154 PF15102.1 gi|296242256|ref|YP_003649743.1| - 0.016 14.8 9.2 0.033 13.8 6.4 1.5 1 0 0 1 1 1 0 TMEM154 protein family Hjc PF01870.13 gi|296242257|ref|YP_003649744.1| - 1.7e-28 98.0 0.1 2.6e-28 97.4 0.1 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) RecU PF03838.9 gi|296242257|ref|YP_003649744.1| - 0.0021 17.5 0.0 0.0024 17.3 0.0 1.1 1 0 0 1 1 1 1 Recombination protein U NERD PF08378.6 gi|296242257|ref|YP_003649744.1| - 0.1 12.8 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain DUF77 PF01910.12 gi|296242258|ref|YP_003649745.1| - 6.8e-24 83.3 0.3 7.6e-24 83.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Radical_SAM PF04055.16 gi|296242258|ref|YP_003649745.1| - 0.0027 17.9 0.0 0.0029 17.8 0.0 1.1 1 0 0 1 1 1 1 Radical SAM superfamily CBS PF00571.23 gi|296242258|ref|YP_003649745.1| - 0.012 15.4 0.0 0.76 9.6 0.0 2.2 2 0 0 2 2 2 0 CBS domain Abhydrolase_6 PF12697.2 gi|296242259|ref|YP_003649746.1| - 2.2e-31 109.5 0.0 3e-31 109.0 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|296242259|ref|YP_003649746.1| - 2.7e-26 92.0 0.0 4e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|296242259|ref|YP_003649746.1| - 4.4e-19 68.1 0.5 1.1e-18 66.8 0.3 1.7 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_1 PF00561.15 gi|296242259|ref|YP_003649746.1| - 4.6e-18 65.6 0.0 3e-10 40.0 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_2 PF02230.11 gi|296242259|ref|YP_003649746.1| - 2.8e-12 46.5 0.0 0.00017 21.1 0.0 3.0 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.16 gi|296242259|ref|YP_003649746.1| - 2.7e-09 36.5 0.0 0.00081 18.6 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family AXE1 PF05448.7 gi|296242259|ref|YP_003649746.1| - 1.9e-06 26.6 0.3 0.0088 14.5 0.0 3.0 2 1 0 2 2 2 2 Acetyl xylan esterase (AXE1) PGAP1 PF07819.8 gi|296242259|ref|YP_003649746.1| - 3.4e-06 26.8 0.1 1.8e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 PGAP1-like protein BAAT_C PF08840.6 gi|296242259|ref|YP_003649746.1| - 5.3e-06 26.2 0.0 9.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.13 gi|296242259|ref|YP_003649746.1| - 1.4e-05 24.4 0.0 0.0099 15.1 0.0 2.2 2 0 0 2 2 2 2 Dienelactone hydrolase family FSH1 PF03959.8 gi|296242259|ref|YP_003649746.1| - 5.7e-05 22.6 0.0 7.8e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Serine hydrolase (FSH1) PAF-AH_p_II PF03403.8 gi|296242259|ref|YP_003649746.1| - 0.00037 18.9 0.2 0.024 12.9 0.1 2.1 2 0 0 2 2 2 1 Platelet-activating factor acetylhydrolase, isoform II Esterase PF00756.15 gi|296242259|ref|YP_003649746.1| - 0.0006 19.3 0.0 0.00076 18.9 0.0 1.2 1 0 0 1 1 1 1 Putative esterase DUF2305 PF10230.4 gi|296242259|ref|YP_003649746.1| - 0.004 16.6 0.0 0.022 14.1 0.0 2.0 2 1 0 2 2 2 1 Uncharacterised conserved protein (DUF2305) Lipase_3 PF01764.20 gi|296242259|ref|YP_003649746.1| - 0.012 15.2 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_3 PF07859.8 gi|296242259|ref|YP_003649746.1| - 0.015 14.9 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF1749 PF08538.5 gi|296242259|ref|YP_003649746.1| - 0.031 13.1 0.0 5.7 5.7 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1749) Thioesterase PF00975.15 gi|296242259|ref|YP_003649746.1| - 0.032 14.4 0.1 0.057 13.6 0.1 1.4 1 0 0 1 1 1 0 Thioesterase domain DUF3089 PF11288.3 gi|296242259|ref|YP_003649746.1| - 0.076 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) LCAT PF02450.10 gi|296242259|ref|YP_003649746.1| - 0.092 11.7 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase Abhydrolase_4 PF08386.5 gi|296242259|ref|YP_003649746.1| - 0.12 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Gln-synt_C PF00120.19 gi|296242260|ref|YP_003649747.1| - 7.2e-68 228.5 0.0 8.8e-68 228.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|296242260|ref|YP_003649747.1| - 5.3e-07 29.1 0.0 1.2e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AsnC_trans_reg PF01037.16 gi|296242261|ref|YP_003649748.1| - 8.9e-16 57.3 0.1 1.5e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|296242261|ref|YP_003649748.1| - 5.1e-13 48.1 0.3 9.1e-13 47.3 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|296242261|ref|YP_003649748.1| - 1.2e-10 40.7 0.0 2e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|296242261|ref|YP_003649748.1| - 5.9e-06 25.7 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|296242261|ref|YP_003649748.1| - 0.00048 19.8 0.0 0.00086 19.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|296242261|ref|YP_003649748.1| - 0.0022 17.6 0.0 0.0037 16.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|296242261|ref|YP_003649748.1| - 0.0031 17.1 0.1 0.0058 16.2 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|296242261|ref|YP_003649748.1| - 0.0052 16.4 0.0 0.013 15.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family RuvB_C PF05491.8 gi|296242261|ref|YP_003649748.1| - 0.0092 15.5 0.1 0.045 13.3 0.0 2.0 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB C-terminus Stk19 PF10494.4 gi|296242261|ref|YP_003649748.1| - 0.012 15.0 0.1 0.014 14.8 0.1 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 HTH_27 PF13463.1 gi|296242261|ref|YP_003649748.1| - 0.013 15.7 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|296242261|ref|YP_003649748.1| - 0.021 14.7 0.1 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Tnp_ISL3 PF13542.1 gi|296242261|ref|YP_003649748.1| - 0.077 12.1 0.0 0.16 11.1 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.1 gi|296242261|ref|YP_003649748.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.14 gi|296242261|ref|YP_003649748.1| - 0.12 12.1 0.1 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|296242261|ref|YP_003649748.1| - 0.13 12.7 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal DUF2655 PF10848.3 gi|296242261|ref|YP_003649748.1| - 0.16 11.8 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2655) Trypsin_2 PF13365.1 gi|296242262|ref|YP_003649749.1| - 1.6e-20 73.3 1.1 2.3e-20 72.7 0.8 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|296242262|ref|YP_003649749.1| - 1.4e-17 64.0 0.1 3.5e-17 62.7 0.1 1.6 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|296242262|ref|YP_003649749.1| - 1.4e-10 40.8 0.1 6.3e-10 38.8 0.0 2.0 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|296242262|ref|YP_003649749.1| - 7.3e-06 26.0 0.0 5.6e-05 23.2 0.0 2.3 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|296242262|ref|YP_003649749.1| - 0.0057 15.1 0.6 0.52 8.6 0.2 2.1 2 0 0 2 2 2 2 Peptidase S46 SDF PF00375.13 gi|296242263|ref|YP_003649750.1| - 1.4e-97 326.9 47.5 1.6e-97 326.7 32.9 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family Yip1 PF04893.12 gi|296242265|ref|YP_003649752.1| - 0.07 12.6 4.0 0.096 12.1 2.7 1.3 1 0 0 1 1 1 0 Yip1 domain DUF373 PF04123.8 gi|296242265|ref|YP_003649752.1| - 0.34 9.8 5.1 0.38 9.7 3.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Phage_holin PF04688.8 gi|296242265|ref|YP_003649752.1| - 0.68 9.4 5.6 1.9 8.0 0.2 2.5 2 0 0 2 2 2 0 Phage lysis protein, holin DUF202 PF02656.10 gi|296242265|ref|YP_003649752.1| - 2.8 8.2 6.6 29 4.9 4.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Rubrerythrin PF02915.12 gi|296242266|ref|YP_003649753.1| - 2.7e-05 24.5 4.9 0.00075 19.8 3.4 2.4 1 1 0 1 1 1 1 Rubrerythrin 4HB_MCP_1 PF12729.2 gi|296242266|ref|YP_003649753.1| - 0.063 12.6 0.4 0.39 10.0 0.0 2.1 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction Ferritin PF00210.19 gi|296242266|ref|YP_003649753.1| - 0.076 12.7 1.5 0.1 12.3 1.1 1.2 1 0 0 1 1 1 0 Ferritin-like domain YrzO PF14142.1 gi|296242266|ref|YP_003649753.1| - 0.15 11.7 0.2 0.35 10.5 0.1 1.6 1 0 0 1 1 1 0 YrzO-like protein HBS1_N PF08938.5 gi|296242266|ref|YP_003649753.1| - 0.4 10.8 1.9 1.1 9.4 0.1 2.2 1 1 1 2 2 2 0 HBS1 N-terminus Aldolase_II PF00596.16 gi|296242267|ref|YP_003649754.1| - 9.1e-51 172.0 0.0 1e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain T2SE PF00437.15 gi|296242268|ref|YP_003649755.1| - 3.3e-10 39.3 0.0 6.4e-10 38.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|296242268|ref|YP_003649755.1| - 1.5e-05 25.8 0.1 0.0001 23.0 0.0 2.5 3 1 1 4 4 1 1 AAA domain AAA_18 PF13238.1 gi|296242268|ref|YP_003649755.1| - 0.00015 22.0 0.1 0.00079 19.7 0.0 2.4 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|296242268|ref|YP_003649755.1| - 0.00035 20.2 0.0 0.01 15.5 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|296242268|ref|YP_003649755.1| - 0.00063 19.7 0.0 0.0013 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|296242268|ref|YP_003649755.1| - 0.0013 18.1 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.24 gi|296242268|ref|YP_003649755.1| - 0.0014 18.8 0.1 0.014 15.6 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|296242268|ref|YP_003649755.1| - 0.002 18.1 0.0 0.0038 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|296242268|ref|YP_003649755.1| - 0.0022 17.8 0.0 0.0066 16.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|296242268|ref|YP_003649755.1| - 0.0037 17.3 0.0 0.04 14.0 0.0 2.5 3 0 0 3 3 2 1 AAA domain SRP54 PF00448.17 gi|296242268|ref|YP_003649755.1| - 0.0043 16.5 0.0 0.0085 15.5 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|296242268|ref|YP_003649755.1| - 0.0054 16.1 0.0 0.016 14.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|296242268|ref|YP_003649755.1| - 0.0058 15.4 0.0 0.013 14.3 0.0 1.5 1 0 0 1 1 1 1 ArgK protein DUF815 PF05673.8 gi|296242268|ref|YP_003649755.1| - 0.0065 15.4 0.1 0.051 12.4 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.13 gi|296242268|ref|YP_003649755.1| - 0.0076 15.7 0.0 0.029 13.8 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family RuvB_N PF05496.7 gi|296242268|ref|YP_003649755.1| - 0.0078 15.2 0.0 0.015 14.3 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_30 PF13604.1 gi|296242268|ref|YP_003649755.1| - 0.01 15.4 0.1 0.03 13.9 0.0 1.7 2 0 0 2 2 1 0 AAA domain DnaB_C PF03796.10 gi|296242268|ref|YP_003649755.1| - 0.01 14.7 0.0 0.029 13.2 0.0 1.7 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain NTPase_1 PF03266.10 gi|296242268|ref|YP_003649755.1| - 0.014 15.1 0.1 0.12 12.1 0.0 2.5 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|296242268|ref|YP_003649755.1| - 0.017 14.7 0.1 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|296242268|ref|YP_003649755.1| - 0.019 14.8 0.0 0.067 13.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.9 gi|296242268|ref|YP_003649755.1| - 0.019 14.7 0.0 0.053 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|296242268|ref|YP_003649755.1| - 0.033 14.3 0.0 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Thymidylate_kin PF02223.12 gi|296242268|ref|YP_003649755.1| - 0.035 13.4 0.0 0.12 11.7 0.0 1.9 1 1 1 2 2 2 0 Thymidylate kinase KTI12 PF08433.5 gi|296242268|ref|YP_003649755.1| - 0.037 13.2 0.0 0.073 12.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 ATP_bind_1 PF03029.12 gi|296242268|ref|YP_003649755.1| - 0.041 13.4 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|296242268|ref|YP_003649755.1| - 0.041 12.9 0.0 0.096 11.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin UPF0079 PF02367.12 gi|296242268|ref|YP_003649755.1| - 0.063 12.9 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|296242268|ref|YP_003649755.1| - 0.066 12.6 0.0 0.26 10.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|296242268|ref|YP_003649755.1| - 0.069 13.4 0.0 0.25 11.6 0.0 1.9 2 0 0 2 2 2 0 ABC transporter AAA_10 PF12846.2 gi|296242268|ref|YP_003649755.1| - 0.11 11.9 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain TrwB_AAD_bind PF10412.4 gi|296242268|ref|YP_003649755.1| - 0.11 11.0 0.0 0.38 9.3 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NB-ARC PF00931.17 gi|296242268|ref|YP_003649755.1| - 0.12 11.2 0.0 2.1 7.0 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain Metallophos PF00149.23 gi|296242269|ref|YP_003649756.1| - 0.00013 21.4 3.7 0.00025 20.5 2.6 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase ArgK PF03308.11 gi|296242270|ref|YP_003649757.1| - 0.00066 18.5 1.0 0.034 12.9 0.1 2.2 2 0 0 2 2 2 2 ArgK protein cobW PF02492.14 gi|296242270|ref|YP_003649757.1| - 0.0072 15.7 0.0 0.025 14.0 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|296242270|ref|YP_003649757.1| - 0.022 14.1 0.6 0.078 12.3 0.1 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|296242270|ref|YP_003649757.1| - 0.056 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_26 PF13500.1 gi|296242270|ref|YP_003649757.1| - 0.11 12.0 0.0 0.31 10.6 0.0 1.5 1 1 0 2 2 2 0 AAA domain PPDK_N PF01326.14 gi|296242271|ref|YP_003649758.1| - 3.2e-100 335.3 0.0 1.2e-99 333.5 0.1 1.7 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|296242271|ref|YP_003649758.1| - 7.8e-87 290.8 0.0 1.4e-86 290.0 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|296242271|ref|YP_003649758.1| - 1.7e-27 94.7 0.5 3.9e-27 93.6 0.3 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.16 gi|296242271|ref|YP_003649758.1| - 0.13 12.4 0.0 0.78 9.8 0.0 2.3 2 0 0 2 2 2 0 Radical SAM superfamily CPSase_L_D2 PF02786.12 gi|296242272|ref|YP_003649759.1| - 5.9e-66 221.7 0.0 8.5e-66 221.2 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_C PF02785.14 gi|296242272|ref|YP_003649759.1| - 4.6e-35 119.8 0.0 9.3e-35 118.8 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain CPSase_L_chain PF00289.17 gi|296242272|ref|YP_003649759.1| - 1.6e-29 102.2 0.0 4.7e-29 100.6 0.0 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|296242272|ref|YP_003649759.1| - 7.3e-18 64.9 0.0 1.5e-17 63.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|296242272|ref|YP_003649759.1| - 3e-09 36.1 0.0 6.9e-09 34.8 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|296242272|ref|YP_003649759.1| - 1.7e-08 34.1 0.0 5.1e-08 32.5 0.0 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|296242272|ref|YP_003649759.1| - 2e-08 33.9 0.0 5.5e-08 32.5 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.17 gi|296242272|ref|YP_003649759.1| - 4.2e-08 32.7 0.0 8e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|296242272|ref|YP_003649759.1| - 1.8e-06 27.6 0.0 3.2e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IF2_N PF04760.10 gi|296242272|ref|YP_003649759.1| - 0.0051 16.4 0.4 2.3 7.9 0.0 2.6 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region ATP-grasp_3 PF02655.9 gi|296242272|ref|YP_003649759.1| - 0.0058 16.5 0.0 0.013 15.3 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|296242272|ref|YP_003649759.1| - 0.0058 15.8 0.0 0.012 14.8 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain RAB3GAP2_C PF14656.1 gi|296242272|ref|YP_003649759.1| - 0.0086 14.2 0.0 0.049 11.7 0.0 1.9 2 0 0 2 2 2 1 Rab3 GTPase-activating protein regulatory subunit C-terminus Nif11 PF07862.6 gi|296242272|ref|YP_003649759.1| - 0.016 15.1 0.2 2.8 7.9 0.0 3.0 3 0 0 3 3 2 0 Nitrogen fixation protein of unknown function GSH-S_ATP PF02955.11 gi|296242272|ref|YP_003649759.1| - 0.032 13.3 0.0 0.086 11.9 0.0 1.8 2 0 0 2 2 2 0 Prokaryotic glutathione synthetase, ATP-grasp domain DUF2414 PF10309.4 gi|296242272|ref|YP_003649759.1| - 0.045 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2414) ATPgrasp_ST PF14397.1 gi|296242272|ref|YP_003649759.1| - 0.081 12.0 1.0 0.29 10.1 0.0 2.4 4 0 0 4 4 4 0 Sugar-transfer associated ATP-grasp Oxidored_nitro PF00148.14 gi|296242272|ref|YP_003649759.1| - 0.13 10.8 0.3 0.42 9.2 0.0 1.9 2 1 0 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Prok-JAB PF14464.1 gi|296242273|ref|YP_003649760.1| - 0.003 17.1 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peptidase_M20 PF01546.23 gi|296242274|ref|YP_003649761.1| - 1.7e-36 125.5 0.0 2.1e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|296242274|ref|YP_003649761.1| - 5.7e-17 61.4 0.0 1e-16 60.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain LAGLIDADG_3 PF14528.1 gi|296242274|ref|YP_003649761.1| - 0.013 15.6 0.0 9 6.6 0.0 2.4 2 0 0 2 2 2 0 LAGLIDADG-like domain Peptidase_M28 PF04389.12 gi|296242274|ref|YP_003649761.1| - 0.019 14.7 0.0 0.77 9.4 0.0 2.2 2 0 0 2 2 2 0 Peptidase family M28 Fer4_13 PF13370.1 gi|296242275|ref|YP_003649762.1| - 5.1e-18 65.1 2.8 6.1e-18 64.9 1.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|296242275|ref|YP_003649762.1| - 3.6e-16 59.4 2.7 4e-16 59.3 1.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|296242275|ref|YP_003649762.1| - 0.00022 21.4 1.4 0.00032 20.9 1.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296242275|ref|YP_003649762.1| - 0.0075 16.6 1.6 0.018 15.3 1.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|296242275|ref|YP_003649762.1| - 0.0086 16.3 0.3 0.0086 16.3 0.2 2.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|296242275|ref|YP_003649762.1| - 0.009 15.8 6.1 0.016 15.0 0.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4 PF00037.22 gi|296242275|ref|YP_003649762.1| - 0.014 14.9 6.7 0.047 13.3 0.9 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296242275|ref|YP_003649762.1| - 0.046 13.5 1.6 0.42 10.4 0.2 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242275|ref|YP_003649762.1| - 0.1 12.4 3.6 0.21 11.3 2.5 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|296242275|ref|YP_003649762.1| - 0.4 10.5 3.1 1.2 8.9 2.2 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Cation_efflux PF01545.16 gi|296242276|ref|YP_003649763.1| - 1.8e-23 83.0 5.4 2.3e-23 82.7 3.8 1.1 1 0 0 1 1 1 1 Cation efflux family MarC PF01914.12 gi|296242277|ref|YP_003649764.1| - 3.2e-46 157.0 16.5 3.7e-46 156.7 11.4 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2910 PF11139.3 gi|296242277|ref|YP_003649764.1| - 0.00023 20.3 10.2 0.0014 17.7 2.9 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2910) DUF202 PF02656.10 gi|296242277|ref|YP_003649764.1| - 2.9 8.1 7.9 28 5.0 5.3 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Amidohydro_4 PF13147.1 gi|296242278|ref|YP_003649765.1| - 2.2e-19 70.5 0.0 3.2e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|296242278|ref|YP_003649765.1| - 2.6e-16 60.1 0.0 1.5e-15 57.6 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|296242278|ref|YP_003649765.1| - 4.4e-11 42.4 0.1 9.3e-11 41.3 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|296242278|ref|YP_003649765.1| - 3.3e-05 23.2 0.1 0.029 13.5 0.0 2.7 3 0 0 3 3 3 2 Amidohydrolase family UPF0051 PF01458.12 gi|296242279|ref|YP_003649766.1| - 2.8e-43 147.9 0.4 3.6e-43 147.6 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) tRNA-synt_1 PF00133.17 gi|296242280|ref|YP_003649767.1| - 6.7e-62 209.3 0.0 8.8e-50 169.3 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|296242280|ref|YP_003649767.1| - 4.1e-21 75.1 1.3 9.7e-11 40.9 0.1 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|296242280|ref|YP_003649767.1| - 4.6e-16 58.9 0.1 1.3e-15 57.4 0.1 1.9 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|296242280|ref|YP_003649767.1| - 2.5e-10 39.9 0.0 5.9e-05 22.3 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|296242280|ref|YP_003649767.1| - 9.1e-05 21.2 2.1 0.00035 19.3 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|296242280|ref|YP_003649767.1| - 0.00013 20.8 0.0 0.0039 16.0 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (R) tRNA-synt_1_2 PF13603.1 gi|296242280|ref|YP_003649767.1| - 0.012 14.9 0.0 0.057 12.7 0.0 2.0 2 0 0 2 2 2 0 Leucyl-tRNA synthetase, Domain 2 MFS_1 PF07690.11 gi|296242281|ref|YP_003649768.1| - 1.2e-17 63.6 40.5 3.2e-09 35.9 11.6 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily tRNA-synt_1f PF01921.13 gi|296242282|ref|YP_003649769.1| - 1.1e-88 297.4 0.0 1.3e-88 297.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) TF_Zn_Ribbon PF08271.7 gi|296242282|ref|YP_003649769.1| - 0.1 11.9 4.8 0.2 10.9 3.3 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding BPD_transp_2 PF02653.11 gi|296242283|ref|YP_003649770.1| - 6.7e-20 71.1 34.5 9.8e-20 70.6 23.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|296242284|ref|YP_003649771.1| - 7e-25 87.4 35.0 7e-25 87.4 24.3 2.1 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component DUF2077 PF09850.4 gi|296242284|ref|YP_003649771.1| - 0.37 10.1 1.8 0.47 9.8 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2077) DUF4225 PF13988.1 gi|296242284|ref|YP_003649771.1| - 0.88 9.0 3.7 2 7.8 2.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) ABC_tran PF00005.22 gi|296242285|ref|YP_003649772.1| - 1.7e-39 135.2 0.2 9.2e-29 100.4 0.1 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|296242285|ref|YP_003649772.1| - 3.3e-07 30.5 0.3 3.7e-05 23.8 0.1 2.5 1 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|296242285|ref|YP_003649772.1| - 0.001 18.5 0.1 0.0027 17.2 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|296242285|ref|YP_003649772.1| - 0.0059 15.6 0.1 0.17 10.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|296242285|ref|YP_003649772.1| - 0.011 15.8 0.1 0.097 12.8 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|296242285|ref|YP_003649772.1| - 0.014 14.8 0.3 0.74 9.1 0.0 2.5 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|296242285|ref|YP_003649772.1| - 0.021 15.1 0.0 0.035 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|296242285|ref|YP_003649772.1| - 0.027 13.6 0.0 0.058 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|296242285|ref|YP_003649772.1| - 0.06 12.5 0.0 1.4 8.1 0.0 2.4 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|296242285|ref|YP_003649772.1| - 0.095 12.6 0.0 0.27 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.18 gi|296242285|ref|YP_003649772.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Dynamin family Bmp PF02608.9 gi|296242286|ref|YP_003649773.1| - 1.8e-34 118.8 0.7 2.4e-34 118.4 0.5 1.1 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_6 PF13458.1 gi|296242286|ref|YP_003649773.1| - 3.3e-05 23.4 2.2 0.00026 20.4 0.1 2.3 1 1 0 2 2 2 1 Periplasmic binding protein RAI16-like PF10257.4 gi|296242286|ref|YP_003649773.1| - 0.17 10.7 0.0 0.23 10.3 0.0 1.1 1 0 0 1 1 1 0 Retinoic acid induced 16-like protein Glycos_transf_2 PF00535.21 gi|296242287|ref|YP_003649774.1| - 2.9e-32 111.6 0.0 3.8e-32 111.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296242287|ref|YP_003649774.1| - 3.2e-14 53.2 0.0 4.4e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|296242287|ref|YP_003649774.1| - 4.3e-08 32.5 0.0 6.1e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|296242287|ref|YP_003649774.1| - 0.0025 18.0 0.0 0.0041 17.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|296242287|ref|YP_003649774.1| - 0.012 14.9 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 21 tRNA-synt_1 PF00133.17 gi|296242288|ref|YP_003649775.1| - 1.6e-180 601.0 0.3 2.1e-180 600.6 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|296242288|ref|YP_003649775.1| - 7.7e-39 132.9 2.6 1.8e-38 131.7 1.8 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|296242288|ref|YP_003649775.1| - 3.8e-23 81.7 0.4 5.9e-07 28.4 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|296242288|ref|YP_003649775.1| - 0.0013 18.0 0.0 0.0032 16.7 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|296242288|ref|YP_003649775.1| - 0.02 14.0 0.0 0.12 11.5 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain dCMP_cyt_deam_1 PF00383.17 gi|296242289|ref|YP_003649776.1| - 1.9e-17 62.7 0.0 2.2e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|296242289|ref|YP_003649776.1| - 1.4e-12 47.7 0.1 1.7e-12 47.3 0.1 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|296242289|ref|YP_003649776.1| - 4.4e-07 29.4 0.9 4.9e-05 22.8 0.1 2.0 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases MafB19-deam PF14437.1 gi|296242289|ref|YP_003649776.1| - 0.064 12.8 0.1 1.2 8.8 0.0 2.0 1 1 1 2 2 2 0 MafB19-like deaminase YwqJ-deaminase PF14431.1 gi|296242289|ref|YP_003649776.1| - 0.076 12.8 0.6 0.87 9.4 0.1 2.3 1 1 1 2 2 2 0 YwqJ-like deaminase DUF3277 PF11681.3 gi|296242289|ref|YP_003649776.1| - 0.14 11.6 0.1 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3277) Methyltransf_11 PF08241.7 gi|296242290|ref|YP_003649777.1| - 8.4e-12 45.4 0.0 1.5e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|296242290|ref|YP_003649777.1| - 2.3e-08 33.9 0.0 5e-08 32.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|296242290|ref|YP_003649777.1| - 1.7e-05 25.1 0.0 3.4e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|296242290|ref|YP_003649777.1| - 0.0014 18.2 0.0 0.0048 16.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|296242290|ref|YP_003649777.1| - 0.0074 15.9 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_25 PF13649.1 gi|296242290|ref|YP_003649777.1| - 0.034 14.4 0.0 0.089 13.1 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|296242290|ref|YP_003649777.1| - 0.05 14.1 0.1 2.5 8.7 0.0 2.2 1 1 1 2 2 2 0 Methyltransferase domain PALP PF00291.20 gi|296242291|ref|YP_003649778.1| - 8.5e-73 245.2 0.0 1e-72 245.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PfkB PF00294.19 gi|296242292|ref|YP_003649779.1| - 2.7e-58 197.4 0.0 3.3e-58 197.1 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|296242292|ref|YP_003649779.1| - 7.5e-08 31.8 0.0 9.9e-08 31.4 0.0 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase DeoC PF01791.4 gi|296242293|ref|YP_003649780.1| - 1.9e-32 112.4 0.0 2.3e-32 112.1 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase His_biosynth PF00977.16 gi|296242293|ref|YP_003649780.1| - 0.041 13.1 0.0 0.22 10.7 0.0 2.1 2 0 0 2 2 2 0 Histidine biosynthesis protein ThiG PF05690.9 gi|296242293|ref|YP_003649780.1| - 0.078 12.0 1.0 0.31 10.0 0.2 2.1 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG Sm_multidrug_ex PF06695.6 gi|296242294|ref|YP_003649781.1| - 1.7e-28 99.1 4.8 3.2e-28 98.3 3.4 1.4 1 0 0 1 1 1 1 Putative small multi-drug export protein HD PF01966.17 gi|296242295|ref|YP_003649782.1| - 3.1e-07 30.4 0.2 1.1e-06 28.6 0.1 2.0 1 0 0 1 1 1 1 HD domain Hemerythrin PF01814.18 gi|296242296|ref|YP_003649783.1| - 2e-06 27.9 3.3 4.4e-06 26.8 2.3 1.6 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain RelB_N PF12910.2 gi|296242296|ref|YP_003649783.1| - 0.057 12.7 0.3 3.5 7.0 0.0 3.2 3 1 1 4 4 4 0 Antitoxin of toxin-antitoxin stability system N-terminal AhpC-TSA PF00578.16 gi|296242297|ref|YP_003649784.1| - 8.9e-32 109.3 0.0 1.2e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|296242297|ref|YP_003649784.1| - 3.7e-14 52.4 0.0 5e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|296242297|ref|YP_003649784.1| - 4e-07 29.5 0.1 1.3e-06 27.9 0.1 1.9 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Lactamase_B PF00753.22 gi|296242298|ref|YP_003649785.1| - 4.1e-19 68.9 0.0 5.7e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily FMN_red PF03358.10 gi|296242298|ref|YP_003649785.1| - 0.00061 19.3 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 NADPH-dependent FMN reductase DUF1408 PF07193.6 gi|296242298|ref|YP_003649785.1| - 0.087 12.3 0.1 0.49 9.9 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1408) Peripla_BP_6 PF13458.1 gi|296242298|ref|YP_003649785.1| - 0.12 11.6 0.1 0.31 10.3 0.0 1.6 1 1 1 2 2 2 0 Periplasmic binding protein dTDP_sugar_isom PF00908.12 gi|296242299|ref|YP_003649786.1| - 4.5e-64 215.0 0.0 5.2e-64 214.8 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_2 PF07883.6 gi|296242299|ref|YP_003649786.1| - 0.027 13.9 0.0 0.058 12.9 0.0 1.5 1 1 0 1 1 1 0 Cupin domain RmlD_sub_bind PF04321.12 gi|296242300|ref|YP_003649787.1| - 4e-74 249.0 0.0 4.5e-74 248.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|296242300|ref|YP_003649787.1| - 2.1e-24 86.2 0.0 3.4e-24 85.5 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|296242300|ref|YP_003649787.1| - 1.6e-11 43.6 0.0 8.3e-10 38.0 0.0 2.2 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|296242300|ref|YP_003649787.1| - 1.7e-11 43.5 0.1 3e-10 39.4 0.1 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|296242300|ref|YP_003649787.1| - 8.9e-08 31.1 0.0 1.5e-07 30.4 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|296242300|ref|YP_003649787.1| - 1.5e-07 31.5 0.0 2e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|296242300|ref|YP_003649787.1| - 0.00015 21.7 0.0 0.00091 19.1 0.0 2.1 1 1 0 1 1 1 1 short chain dehydrogenase DFP PF04127.10 gi|296242300|ref|YP_003649787.1| - 0.0032 17.1 0.0 0.0058 16.2 0.0 1.3 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein NmrA PF05368.8 gi|296242300|ref|YP_003649787.1| - 0.013 14.7 0.0 0.058 12.6 0.0 2.0 2 0 0 2 2 2 0 NmrA-like family B12-binding PF02310.14 gi|296242300|ref|YP_003649787.1| - 0.084 12.7 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 B12 binding domain Epimerase PF01370.16 gi|296242301|ref|YP_003649788.1| - 5.9e-68 228.8 0.0 7.6e-68 228.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|296242301|ref|YP_003649788.1| - 4.3e-21 74.8 0.0 5.5e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|296242301|ref|YP_003649788.1| - 1.1e-20 73.6 0.0 1.3e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|296242301|ref|YP_003649788.1| - 7.1e-18 64.4 0.0 1e-17 63.9 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|296242301|ref|YP_003649788.1| - 3.9e-15 55.5 0.0 5.8e-14 51.6 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|296242301|ref|YP_003649788.1| - 2.4e-08 34.2 0.0 3.4e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|296242301|ref|YP_003649788.1| - 0.00031 20.0 0.0 0.0006 19.1 0.0 1.4 2 0 0 2 2 2 1 NmrA-like family Saccharop_dh PF03435.13 gi|296242301|ref|YP_003649788.1| - 0.00094 18.2 0.1 0.0023 16.9 0.0 1.6 2 0 0 2 2 2 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|296242301|ref|YP_003649788.1| - 0.0031 17.4 0.0 0.014 15.3 0.0 1.9 2 0 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|296242301|ref|YP_003649788.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Semialdhyde_dh PF01118.19 gi|296242301|ref|YP_003649788.1| - 0.048 13.9 0.0 0.083 13.2 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NTP_transferase PF00483.18 gi|296242302|ref|YP_003649789.1| - 3.8e-46 157.4 0.0 4.7e-46 157.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|296242302|ref|YP_003649789.1| - 1.3e-11 44.7 0.0 2.1e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|296242302|ref|YP_003649789.1| - 0.00064 19.1 0.0 0.016 14.7 0.0 2.9 2 0 0 2 2 2 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|296242302|ref|YP_003649789.1| - 0.0043 16.6 0.0 0.007 15.9 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.14 gi|296242302|ref|YP_003649789.1| - 0.035 13.7 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 Cytidylyltransferase Glycos_transf_2 PF00535.21 gi|296242303|ref|YP_003649790.1| - 9.4e-16 57.9 0.0 1.6e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296242303|ref|YP_003649790.1| - 5.7e-13 49.1 0.0 5.6e-12 45.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 DUF454 PF04304.8 gi|296242304|ref|YP_003649791.1| - 3.6 7.7 14.9 7.5 6.6 2.0 3.8 3 0 0 3 3 3 0 Protein of unknown function (DUF454) NTP_transf_5 PF14907.1 gi|296242306|ref|YP_003649793.1| - 3.7e-07 29.7 0.0 5.4e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Glycos_transf_2 PF00535.21 gi|296242309|ref|YP_003649796.1| - 2e-28 99.1 0.2 3.2e-28 98.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296242309|ref|YP_003649796.1| - 4.1e-18 66.0 0.0 5.9e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|296242309|ref|YP_003649796.1| - 7.4e-13 48.2 0.1 3.2e-12 46.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|296242309|ref|YP_003649796.1| - 1.2e-07 31.6 0.3 1.7e-07 31.1 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_7C PF02709.9 gi|296242309|ref|YP_003649796.1| - 2.5e-06 26.8 0.3 5e-06 25.8 0.2 1.5 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_5 PF13712.1 gi|296242309|ref|YP_003649796.1| - 0.0046 16.2 0.0 9.6 5.3 0.0 3.1 2 1 1 3 3 3 1 Glycosyltransferase like family Glyco_transf_21 PF13506.1 gi|296242309|ref|YP_003649796.1| - 0.023 13.9 0.0 0.054 12.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|296242309|ref|YP_003649796.1| - 0.034 14.4 0.0 0.062 13.6 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 2 GlcNAc PF11397.3 gi|296242309|ref|YP_003649796.1| - 0.078 12.0 0.1 0.16 11.0 0.1 1.5 2 0 0 2 2 2 0 Glycosyltransferase (GlcNAc) AAA_17 PF13207.1 gi|296242310|ref|YP_003649797.1| - 2.4e-07 31.6 0.1 7.3e-07 30.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|296242310|ref|YP_003649797.1| - 0.0012 19.1 0.0 0.0024 18.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|296242310|ref|YP_003649797.1| - 0.026 14.2 0.0 0.037 13.7 0.0 1.4 1 1 0 1 1 1 0 Part of AAA domain AAA_14 PF13173.1 gi|296242310|ref|YP_003649797.1| - 0.05 13.5 0.1 0.7 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|296242310|ref|YP_003649797.1| - 0.094 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_33 PF13671.1 gi|296242310|ref|YP_003649797.1| - 0.13 12.1 0.1 0.48 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain Glycos_transf_2 PF00535.21 gi|296242313|ref|YP_003649800.1| - 1.4e-25 89.9 0.1 1.7e-25 89.6 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296242313|ref|YP_003649800.1| - 4.9e-17 62.4 0.0 6.5e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|296242313|ref|YP_003649800.1| - 1.5e-07 30.8 1.1 5.3e-07 29.0 0.7 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|296242313|ref|YP_003649800.1| - 9.2e-07 28.7 0.0 1.4e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|296242313|ref|YP_003649800.1| - 0.0013 18.0 0.0 0.002 17.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|296242313|ref|YP_003649800.1| - 0.0064 15.7 0.1 0.017 14.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.1 gi|296242313|ref|YP_003649800.1| - 0.028 14.7 0.0 0.047 14.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_deac_1 PF01522.16 gi|296242314|ref|YP_003649801.1| - 3.9e-23 81.4 0.0 6.2e-23 80.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_2 PF00535.21 gi|296242315|ref|YP_003649802.1| - 3e-27 95.3 0.0 4.3e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296242315|ref|YP_003649802.1| - 1.8e-20 73.7 0.0 3.3e-19 69.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|296242315|ref|YP_003649802.1| - 7e-13 48.2 0.0 5.9e-12 45.2 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|296242315|ref|YP_003649802.1| - 3.2e-09 36.7 0.0 1.1e-08 35.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Anp1 PF03452.9 gi|296242315|ref|YP_003649802.1| - 2.9e-07 29.9 0.2 0.00011 21.4 0.2 2.2 1 1 1 2 2 2 2 Anp1 Glyco_tranf_2_5 PF13712.1 gi|296242315|ref|YP_003649802.1| - 0.00018 20.8 0.0 0.00074 18.8 0.0 1.9 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_4 PF13704.1 gi|296242315|ref|YP_003649802.1| - 0.0004 20.6 0.0 0.00067 19.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|296242315|ref|YP_003649802.1| - 0.00041 19.6 0.0 0.0013 18.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 21 RP-C PF03428.8 gi|296242315|ref|YP_003649802.1| - 0.068 12.6 0.2 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain T_Ag_DNA_bind PF02217.11 gi|296242315|ref|YP_003649802.1| - 0.13 12.6 1.1 0.28 11.6 0.3 2.0 2 0 0 2 2 2 0 Origin of replication binding protein Glycos_transf_2 PF00535.21 gi|296242316|ref|YP_003649803.1| - 1e-21 77.3 0.2 1.6e-21 76.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296242316|ref|YP_003649803.1| - 1.2e-14 54.6 0.0 2.1e-14 53.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|296242316|ref|YP_003649803.1| - 1.5e-13 50.9 0.5 6.7e-13 48.7 0.3 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|296242316|ref|YP_003649803.1| - 3.2e-12 46.1 0.1 6.7e-12 45.0 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|296242316|ref|YP_003649803.1| - 4.9e-05 23.5 0.0 9.2e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|296242316|ref|YP_003649803.1| - 0.0013 18.0 0.0 0.0088 15.3 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 21 GlcNAc PF11397.3 gi|296242316|ref|YP_003649803.1| - 0.054 12.6 0.0 0.11 11.5 0.0 1.5 1 1 0 1 1 1 0 Glycosyltransferase (GlcNAc) RNA12 PF10443.4 gi|296242316|ref|YP_003649803.1| - 0.062 11.7 0.1 0.074 11.5 0.1 1.1 1 0 0 1 1 1 0 RNA12 protein Glyco_transf_49 PF13896.1 gi|296242316|ref|YP_003649803.1| - 0.09 11.8 0.0 1.2 8.1 0.0 2.1 2 0 0 2 2 2 0 Glycosyl-transferase for dystroglycan HTH_17 PF12728.2 gi|296242316|ref|YP_003649803.1| - 0.1 12.8 0.0 0.76 10.0 0.0 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain Shugoshin_N PF07558.6 gi|296242316|ref|YP_003649803.1| - 0.37 10.5 2.7 1.1 9.0 0.3 2.7 2 0 0 2 2 2 0 Shugoshin N-terminal coiled-coil region PMT_2 PF13231.1 gi|296242317|ref|YP_003649804.1| - 6.1e-05 22.9 21.7 6.1e-05 22.9 15.0 4.7 3 2 1 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase EpsG PF14897.1 gi|296242317|ref|YP_003649804.1| - 0.0018 17.3 52.5 0.018 13.9 21.7 2.3 2 0 0 2 2 2 2 EpsG family Glycos_transf_1 PF00534.15 gi|296242318|ref|YP_003649805.1| - 8.2e-29 100.2 0.3 1.8e-28 99.1 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|296242318|ref|YP_003649805.1| - 1.1e-14 54.7 0.0 7.8e-14 51.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|296242318|ref|YP_003649805.1| - 2.7e-08 34.0 0.0 6.4e-08 32.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|296242318|ref|YP_003649805.1| - 1.5e-06 28.0 0.2 7.2e-06 25.8 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_5 PF08323.6 gi|296242318|ref|YP_003649805.1| - 0.0034 16.9 0.0 0.023 14.2 0.0 2.1 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_tranf_2_3 PF13641.1 gi|296242319|ref|YP_003649806.1| - 3.5e-29 102.2 0.2 7.2e-29 101.2 0.1 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|296242319|ref|YP_003649806.1| - 1.9e-27 95.9 0.0 2.5e-27 95.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|296242319|ref|YP_003649806.1| - 2.4e-10 39.9 0.0 9.9e-10 37.9 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|296242319|ref|YP_003649806.1| - 4.1e-10 39.6 0.8 6e-10 39.1 0.5 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|296242319|ref|YP_003649806.1| - 4.4e-07 29.2 0.0 8.6e-07 28.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|296242319|ref|YP_003649806.1| - 0.006 16.8 0.1 0.013 15.7 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Anp1 PF03452.9 gi|296242319|ref|YP_003649806.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Anp1 Glyco_transf_17 PF04724.8 gi|296242319|ref|YP_003649806.1| - 0.16 10.9 0.0 0.27 10.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 17 Tautomerase PF01361.16 gi|296242320|ref|YP_003649807.1| - 8.7e-14 50.8 0.2 1e-13 50.6 0.2 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|296242320|ref|YP_003649807.1| - 7.8e-08 32.2 0.0 8.8e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|296242320|ref|YP_003649807.1| - 4.3e-06 26.7 0.0 4.9e-06 26.5 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme Glyco_hydro_48 PF02011.10 gi|296242320|ref|YP_003649807.1| - 0.14 10.2 0.0 0.15 10.1 0.0 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 48 Trp_oprn_chp PF09534.5 gi|296242322|ref|YP_003649809.1| - 0.032 13.8 0.8 0.035 13.7 0.6 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Glycos_transf_2 PF00535.21 gi|296242325|ref|YP_003649812.1| - 4.3e-25 88.3 0.0 6.5e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296242325|ref|YP_003649812.1| - 1.3e-05 25.1 0.0 2.5e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|296242325|ref|YP_003649812.1| - 7.2e-05 22.0 0.0 9.8e-05 21.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|296242325|ref|YP_003649812.1| - 0.00011 21.5 0.0 0.00023 20.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 DUF3561 PF12084.3 gi|296242325|ref|YP_003649812.1| - 1.1 9.1 8.7 0.54 10.1 4.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3561) HTH_AsnC-type PF13404.1 gi|296242326|ref|YP_003649813.1| - 3.6e-13 48.8 0.7 6.3e-13 48.0 0.5 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|296242326|ref|YP_003649813.1| - 3.4e-12 45.5 0.4 7.5e-12 44.4 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|296242326|ref|YP_003649813.1| - 4.3e-09 35.9 0.0 8.5e-09 34.9 0.0 1.5 1 0 0 1 1 1 1 AsnC family HxlR PF01638.12 gi|296242326|ref|YP_003649813.1| - 9.6e-06 25.1 0.1 1.8e-05 24.2 0.0 1.5 2 0 0 2 2 2 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|296242326|ref|YP_003649813.1| - 2.7e-05 23.7 0.1 6.5e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|296242326|ref|YP_003649813.1| - 5.5e-05 22.7 0.2 0.00013 21.5 0.1 1.7 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|296242326|ref|YP_003649813.1| - 8.1e-05 22.2 0.1 0.00025 20.7 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|296242326|ref|YP_003649813.1| - 0.0011 18.9 0.1 0.009 16.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|296242326|ref|YP_003649813.1| - 0.011 16.0 0.2 0.11 12.8 0.0 2.2 1 1 1 2 2 2 0 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|296242326|ref|YP_003649813.1| - 0.015 14.6 0.1 0.026 13.8 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_5 PF01022.15 gi|296242326|ref|YP_003649813.1| - 0.015 14.9 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|296242326|ref|YP_003649813.1| - 0.021 14.9 0.1 0.57 10.3 0.0 2.3 1 1 0 2 2 2 0 Transcriptional regulator HTH_20 PF12840.2 gi|296242326|ref|YP_003649813.1| - 0.057 13.2 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|296242326|ref|YP_003649813.1| - 0.12 11.8 0.1 2 7.9 0.0 2.2 1 1 1 2 2 2 0 Sigma-70, region 4 TrmB PF01978.14 gi|296242326|ref|YP_003649813.1| - 0.15 11.7 0.4 0.43 10.3 0.1 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2330 PF10092.4 gi|296242327|ref|YP_003649814.1| - 0.027 13.3 0.0 0.033 13.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2330) Desulfoferrodox PF01880.13 gi|296242328|ref|YP_003649815.1| - 2.4e-28 98.2 0.0 2.9e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 Desulfoferrodoxin SoxY PF13501.1 gi|296242328|ref|YP_003649815.1| - 1.5e-05 25.0 0.0 1.9e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Sulfur oxidation protein SoxY GHL15 PF14885.1 gi|296242329|ref|YP_003649816.1| - 0.054 13.6 0.0 1 9.6 0.0 2.1 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase family 15 GCHY-1 PF02649.9 gi|296242330|ref|YP_003649817.1| - 6.6e-31 107.5 0.0 9.9e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 MAF_flag10 PF01973.13 gi|296242331|ref|YP_003649818.1| - 1.2e-28 99.7 0.0 1.6e-28 99.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 DUF381 PF04038.7 gi|296242332|ref|YP_003649819.1| - 7.7e-13 48.2 0.5 1.3e-12 47.5 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|296242332|ref|YP_003649819.1| - 6.4e-12 44.7 0.0 9.5e-12 44.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) Flavoprotein PF02441.14 gi|296242333|ref|YP_003649820.1| - 3.8e-15 55.7 0.0 7.1e-15 54.8 0.0 1.4 2 0 0 2 2 2 1 Flavoprotein Fer4_6 PF12837.2 gi|296242333|ref|YP_003649820.1| - 1.6e-06 27.7 10.3 0.0026 17.5 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|296242333|ref|YP_003649820.1| - 9.6e-06 25.4 4.8 1.5e-05 24.8 3.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296242333|ref|YP_003649820.1| - 1.5e-05 25.2 9.1 2.8e-05 24.3 6.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|296242333|ref|YP_003649820.1| - 2.9e-05 23.9 0.8 0.028 14.4 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242333|ref|YP_003649820.1| - 8.7e-05 23.1 8.2 0.046 14.4 0.2 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|296242333|ref|YP_003649820.1| - 0.00048 19.8 11.2 0.00083 19.1 7.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|296242333|ref|YP_003649820.1| - 0.002 18.3 10.5 0.038 14.2 8.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296242333|ref|YP_003649820.1| - 0.0071 16.2 0.8 0.0071 16.2 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain MOZART1 PF12554.3 gi|296242333|ref|YP_003649820.1| - 0.03 13.7 0.9 0.079 12.4 0.2 2.0 2 0 0 2 2 2 0 Mitotic-spindle organizing gamma-tubulin ring associated Fer4_3 PF12798.2 gi|296242333|ref|YP_003649820.1| - 0.063 13.8 11.5 2.5 8.8 2.1 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|296242333|ref|YP_003649820.1| - 0.081 12.5 0.6 0.081 12.5 0.4 3.2 2 1 0 2 2 2 0 4Fe-4S binding domain PolC_DP2 PF03833.8 gi|296242333|ref|YP_003649820.1| - 0.26 8.9 1.3 0.33 8.5 0.9 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Fer4_21 PF14697.1 gi|296242333|ref|YP_003649820.1| - 0.3 10.9 12.3 0.8 9.6 1.8 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|296242333|ref|YP_003649820.1| - 0.49 10.8 17.0 2 8.9 3.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|296242333|ref|YP_003649820.1| - 4 7.8 14.9 1.4e+02 2.8 10.5 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4346 PF14251.1 gi|296242334|ref|YP_003649821.1| - 1.8e-12 47.0 0.3 7.1e-05 22.5 0.1 3.0 2 1 1 3 3 3 2 Domain of unknown function (DUF4346) KaiC PF06745.8 gi|296242335|ref|YP_003649822.1| - 5.2e-25 87.8 0.1 6.6e-25 87.5 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|296242335|ref|YP_003649822.1| - 6.9e-11 41.9 0.0 1.2e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|296242335|ref|YP_003649822.1| - 4.5e-05 22.4 0.0 8.7e-05 21.5 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_14 PF13173.1 gi|296242335|ref|YP_003649822.1| - 0.00016 21.5 0.0 0.00039 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.7 gi|296242335|ref|YP_003649822.1| - 0.00016 21.2 0.1 0.00076 19.0 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF835) AAA_10 PF12846.2 gi|296242335|ref|YP_003649822.1| - 0.00035 20.1 0.1 0.00042 19.8 0.1 1.1 1 0 0 1 1 1 1 AAA-like domain AAA_19 PF13245.1 gi|296242335|ref|YP_003649822.1| - 0.00076 19.1 0.0 0.0018 18.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|296242335|ref|YP_003649822.1| - 0.0011 18.6 0.1 0.0073 15.9 0.0 2.2 2 1 0 2 2 2 1 NACHT domain T2SE PF00437.15 gi|296242335|ref|YP_003649822.1| - 0.0014 17.5 0.1 0.02 13.7 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|296242335|ref|YP_003649822.1| - 0.003 17.0 0.0 0.0061 16.0 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family Arch_ATPase PF01637.13 gi|296242335|ref|YP_003649822.1| - 0.0031 17.2 0.0 0.0045 16.7 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|296242335|ref|YP_003649822.1| - 0.0032 17.4 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ABC_tran PF00005.22 gi|296242335|ref|YP_003649822.1| - 0.0043 17.3 0.0 0.0071 16.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter Elong_Iki1 PF10483.4 gi|296242335|ref|YP_003649822.1| - 0.0051 16.2 0.1 0.013 14.8 0.1 1.6 1 1 1 2 2 2 1 Elongator subunit Iki1 NTPase_P4 PF11602.3 gi|296242335|ref|YP_003649822.1| - 0.01 14.8 0.1 0.013 14.4 0.1 1.2 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 CbiA PF01656.18 gi|296242335|ref|YP_003649822.1| - 0.019 14.4 0.1 0.029 13.7 0.1 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|296242335|ref|YP_003649822.1| - 0.019 14.0 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.17 gi|296242335|ref|YP_003649822.1| - 0.02 14.3 0.0 0.031 13.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|296242335|ref|YP_003649822.1| - 0.022 14.4 0.0 0.041 13.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|296242335|ref|YP_003649822.1| - 0.029 14.6 0.2 0.14 12.4 0.0 2.1 1 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|296242335|ref|YP_003649822.1| - 0.04 14.0 0.0 0.077 13.1 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|296242335|ref|YP_003649822.1| - 0.052 13.0 0.1 0.14 11.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain KAP_NTPase PF07693.9 gi|296242335|ref|YP_003649822.1| - 0.059 12.3 0.0 0.071 12.0 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain DUF2075 PF09848.4 gi|296242335|ref|YP_003649822.1| - 0.06 12.3 0.0 0.072 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|296242335|ref|YP_003649822.1| - 0.061 12.8 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|296242335|ref|YP_003649822.1| - 0.063 12.1 0.0 0.12 11.2 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Miro PF08477.8 gi|296242335|ref|YP_003649822.1| - 0.066 13.7 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein Sigma54_activat PF00158.21 gi|296242335|ref|YP_003649822.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|296242335|ref|YP_003649822.1| - 0.15 11.5 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_ATPase PF09818.4 gi|296242335|ref|YP_003649822.1| - 0.22 10.0 1.2 0.68 8.4 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class CoA_transf_3 PF02515.12 gi|296242336|ref|YP_003649823.1| - 6.7e-54 182.0 0.0 8.6e-54 181.6 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III G_glu_transpept PF01019.16 gi|296242337|ref|YP_003649824.1| - 6.7e-92 308.5 0.0 8.5e-92 308.2 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase GHMP_kinases_N PF00288.21 gi|296242338|ref|YP_003649825.1| - 9.6e-07 28.7 0.1 3e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|296242338|ref|YP_003649825.1| - 1.6e-05 24.9 0.0 3.7e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal DUF447 PF04289.7 gi|296242339|ref|YP_003649826.1| - 1e-15 57.7 0.0 1.2e-15 57.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DUF1464 PF07318.7 gi|296242340|ref|YP_003649827.1| - 7.9e-90 301.1 2.6 9.1e-90 300.9 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) SrfB PF07520.6 gi|296242340|ref|YP_003649827.1| - 0.071 10.5 0.0 0.096 10.1 0.0 1.1 1 0 0 1 1 1 0 Virulence factor SrfB DEDD_Tnp_IS110 PF01548.12 gi|296242340|ref|YP_003649827.1| - 0.17 11.5 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 Transposase MatE PF01554.13 gi|296242341|ref|YP_003649828.1| - 8e-49 165.3 42.8 1.6e-27 96.1 5.1 3.2 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|296242341|ref|YP_003649828.1| - 8.6e-15 54.8 38.1 5.4e-13 48.9 7.2 4.9 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain RebB PF11747.3 gi|296242341|ref|YP_003649828.1| - 0.049 13.5 0.8 0.15 11.9 0.5 1.8 1 0 0 1 1 1 0 Killing trait HAD_2 PF13419.1 gi|296242342|ref|YP_003649829.1| - 1.2e-19 71.1 0.0 2.1e-19 70.4 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|296242342|ref|YP_003649829.1| - 2.8e-07 30.1 0.0 4.5e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|296242342|ref|YP_003649829.1| - 6.4e-06 26.7 0.0 9.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase MoCF_biosynth PF00994.19 gi|296242343|ref|YP_003649830.1| - 8.3e-25 86.8 0.0 1e-24 86.6 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Trehalase PF01204.13 gi|296242343|ref|YP_003649830.1| - 0.14 10.7 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 Trehalase DNA_binding_1 PF01035.15 gi|296242344|ref|YP_003649831.1| - 1.1e-20 73.1 0.0 1.3e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_3 PF01381.17 gi|296242345|ref|YP_003649832.1| - 0.072 12.9 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix DUF1987 PF09345.5 gi|296242346|ref|YP_003649833.1| - 0.056 13.2 0.0 6 6.7 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1987) Mito_fiss_reg PF05308.6 gi|296242346|ref|YP_003649833.1| - 1.3 8.2 6.9 2 7.7 4.8 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator MoCF_biosynth PF00994.19 gi|296242347|ref|YP_003649834.1| - 1.3e-19 70.0 0.2 1.9e-19 69.4 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain SBP_bac_11 PF13531.1 gi|296242348|ref|YP_003649835.1| - 1.7e-28 99.8 0.0 2.1e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|296242348|ref|YP_003649835.1| - 8e-05 22.5 0.0 0.00039 20.2 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|296242348|ref|YP_003649835.1| - 0.098 11.5 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 PBP superfamily domain BPD_transp_1 PF00528.17 gi|296242349|ref|YP_003649836.1| - 3.9e-15 55.8 12.2 3.9e-15 55.8 8.4 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|296242350|ref|YP_003649837.1| - 1.6e-27 96.5 0.0 2.4e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242350|ref|YP_003649837.1| - 1.1e-14 55.1 0.5 7e-12 45.8 0.4 2.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|296242350|ref|YP_003649837.1| - 3.3e-06 26.4 0.1 0.016 14.2 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|296242350|ref|YP_003649837.1| - 6e-05 22.4 0.1 0.00012 21.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|296242350|ref|YP_003649837.1| - 0.00063 20.1 0.0 0.00097 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|296242350|ref|YP_003649837.1| - 0.016 14.6 0.0 0.034 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|296242350|ref|YP_003649837.1| - 0.05 12.1 0.0 0.17 10.4 0.0 1.9 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|296242350|ref|YP_003649837.1| - 0.058 13.5 0.2 0.17 12.0 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|296242350|ref|YP_003649837.1| - 0.059 13.0 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|296242350|ref|YP_003649837.1| - 0.061 13.2 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|296242350|ref|YP_003649837.1| - 0.076 12.9 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|296242350|ref|YP_003649837.1| - 0.085 12.6 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|296242350|ref|YP_003649837.1| - 0.12 11.2 0.1 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|296242350|ref|YP_003649837.1| - 0.15 12.0 0.0 0.77 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Radical_SAM PF04055.16 gi|296242351|ref|YP_003649838.1| - 7.5e-24 84.7 0.0 1.4e-23 83.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|296242351|ref|YP_003649838.1| - 1.8e-19 69.6 0.3 3.4e-19 68.7 0.0 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.1 gi|296242351|ref|YP_003649838.1| - 3.6e-07 30.2 0.0 1.1e-06 28.6 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|296242351|ref|YP_003649838.1| - 2.8e-06 27.4 0.0 6.2e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain MoaC PF01967.16 gi|296242352|ref|YP_003649839.1| - 1.7e-46 157.2 2.2 2e-46 157.0 1.5 1.0 1 0 0 1 1 1 1 MoaC family ThiS PF02597.15 gi|296242353|ref|YP_003649840.1| - 2.7e-07 30.9 0.0 3.6e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.1 gi|296242353|ref|YP_003649840.1| - 0.00023 20.6 0.0 0.00042 19.7 0.0 1.5 1 1 0 1 1 1 1 Mut7-C ubiquitin TGS PF02824.16 gi|296242353|ref|YP_003649840.1| - 0.013 15.3 0.2 0.021 14.6 0.1 1.6 1 1 0 1 1 1 0 TGS domain MoaE PF02391.12 gi|296242354|ref|YP_003649841.1| - 1e-24 86.6 0.0 1.2e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 MoaE protein DAO PF01266.19 gi|296242355|ref|YP_003649842.1| - 3e-75 253.3 0.0 3.4e-75 253.1 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|296242355|ref|YP_003649842.1| - 4.4e-10 38.9 1.5 1.9e-09 36.8 1.0 1.8 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|296242355|ref|YP_003649842.1| - 1.3e-05 25.3 0.1 0.00037 20.6 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|296242355|ref|YP_003649842.1| - 8.6e-05 21.1 1.6 0.014 13.9 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|296242355|ref|YP_003649842.1| - 0.00016 21.6 2.9 0.012 15.4 2.0 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|296242355|ref|YP_003649842.1| - 0.00034 19.7 0.2 0.00055 19.0 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|296242355|ref|YP_003649842.1| - 0.00058 19.0 1.6 0.056 12.5 0.1 2.2 2 0 0 2 2 2 2 Thi4 family NAD_binding_9 PF13454.1 gi|296242355|ref|YP_003649842.1| - 0.00079 19.2 0.5 0.0081 15.9 0.1 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.22 gi|296242355|ref|YP_003649842.1| - 0.002 18.4 1.8 1.9 8.9 0.4 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|296242355|ref|YP_003649842.1| - 0.011 15.8 1.0 0.031 14.3 0.2 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|296242355|ref|YP_003649842.1| - 0.016 14.1 2.1 0.77 8.5 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|296242355|ref|YP_003649842.1| - 0.046 13.7 0.2 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|296242355|ref|YP_003649842.1| - 0.066 13.0 0.2 0.14 11.9 0.1 1.5 1 0 0 1 1 1 0 ThiF family FAD_oxidored PF12831.2 gi|296242355|ref|YP_003649842.1| - 0.11 11.5 0.9 2.5 7.0 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|296242356|ref|YP_003649843.1| - 4.5e-10 39.4 1.0 5.6e-10 39.1 0.7 1.2 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Fer4 PF00037.22 gi|296242357|ref|YP_003649844.1| - 5.7e-11 41.5 12.3 4.2e-07 29.2 2.3 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|296242357|ref|YP_003649844.1| - 2.5e-08 34.1 9.7 4.5e-08 33.3 6.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242357|ref|YP_003649844.1| - 7.5e-08 32.0 20.3 5.8e-05 22.8 0.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296242357|ref|YP_003649844.1| - 5.5e-07 29.1 12.9 0.00011 21.8 1.0 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|296242357|ref|YP_003649844.1| - 7.3e-07 28.7 14.2 0.00014 21.5 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|296242357|ref|YP_003649844.1| - 1.1e-06 28.7 9.9 2.2e-06 27.8 6.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242357|ref|YP_003649844.1| - 3.7e-06 27.5 9.4 0.011 16.4 6.6 2.8 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|296242357|ref|YP_003649844.1| - 4.9e-06 26.2 10.5 1.1e-05 25.2 7.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|296242357|ref|YP_003649844.1| - 1.4e-05 25.0 11.3 0.00057 20.0 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|296242357|ref|YP_003649844.1| - 3e-05 24.4 3.7 0.00019 21.9 0.0 2.5 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|296242357|ref|YP_003649844.1| - 0.00016 21.6 17.7 0.0019 18.1 0.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|296242357|ref|YP_003649844.1| - 0.017 15.4 0.3 0.017 15.4 0.2 2.6 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|296242357|ref|YP_003649844.1| - 0.023 15.2 17.2 0.41 11.3 1.5 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|296242357|ref|YP_003649844.1| - 0.041 13.7 3.1 0.14 12.0 2.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296242357|ref|YP_003649844.1| - 0.068 13.6 14.8 0.071 13.5 3.3 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296242357|ref|YP_003649844.1| - 0.16 12.3 11.3 0.39 11.0 2.1 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer2_4 PF13510.1 gi|296242358|ref|YP_003649845.1| - 1.1e-22 79.6 0.0 2.4e-22 78.5 0.0 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Pyr_redox_2 PF07992.9 gi|296242358|ref|YP_003649845.1| - 9.3e-14 51.7 5.1 6.8e-07 29.3 0.1 4.4 1 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|296242358|ref|YP_003649845.1| - 3.1e-08 33.0 7.0 1.1e-05 24.6 0.4 2.5 3 0 0 3 3 3 2 FAD binding domain Thi4 PF01946.12 gi|296242358|ref|YP_003649845.1| - 1.4e-07 30.8 2.4 2.7e-05 23.3 0.1 2.4 2 0 0 2 2 2 2 Thi4 family Pyr_redox_3 PF13738.1 gi|296242358|ref|YP_003649845.1| - 2.4e-07 31.0 0.8 0.0024 17.9 0.0 2.5 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|296242358|ref|YP_003649845.1| - 5.8e-06 26.2 8.7 0.006 16.5 0.6 3.1 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|296242358|ref|YP_003649845.1| - 1.4e-05 24.1 8.5 0.00056 18.8 0.2 3.5 4 0 0 4 4 4 2 FAD binding domain DAO PF01266.19 gi|296242358|ref|YP_003649845.1| - 7e-05 21.8 7.5 0.012 14.5 1.4 3.5 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|296242358|ref|YP_003649845.1| - 7.8e-05 22.8 0.5 0.11 12.7 0.1 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|296242358|ref|YP_003649845.1| - 0.00011 22.5 8.9 0.016 15.5 0.8 3.4 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|296242358|ref|YP_003649845.1| - 0.00032 19.6 7.5 0.044 12.6 0.3 3.3 3 0 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|296242358|ref|YP_003649845.1| - 0.0005 18.6 5.8 0.0026 16.3 0.4 2.5 2 0 0 2 2 2 1 HI0933-like protein ApbA PF02558.11 gi|296242358|ref|YP_003649845.1| - 0.00091 18.6 0.1 0.0022 17.4 0.0 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|296242358|ref|YP_003649845.1| - 0.0018 17.8 3.5 0.032 13.7 0.1 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.14 gi|296242358|ref|YP_003649845.1| - 0.0036 16.4 0.9 0.19 10.8 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|296242358|ref|YP_003649845.1| - 0.0044 17.1 3.3 0.66 10.0 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase FAD_oxidored PF12831.2 gi|296242358|ref|YP_003649845.1| - 0.01 14.9 0.1 0.01 14.9 0.0 2.5 3 1 0 3 3 3 1 FAD dependent oxidoreductase ThiF PF00899.16 gi|296242358|ref|YP_003649845.1| - 0.016 15.0 4.8 2 8.2 0.2 2.6 2 0 0 2 2 2 0 ThiF family F420_oxidored PF03807.12 gi|296242358|ref|YP_003649845.1| - 0.031 14.7 1.7 1.8 9.0 0.4 3.5 3 1 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent Lycopene_cycl PF05834.7 gi|296242358|ref|YP_003649845.1| - 0.083 11.7 5.1 0.35 9.7 0.4 2.8 3 0 0 3 3 3 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|296242358|ref|YP_003649845.1| - 5.6 6.7 7.2 21 4.8 0.4 3.6 4 0 0 4 4 4 0 FAD-NAD(P)-binding AIRS_C PF02769.17 gi|296242359|ref|YP_003649846.1| - 1.1e-19 70.9 0.0 1.7e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|296242359|ref|YP_003649846.1| - 5.4e-17 61.8 0.0 9.4e-16 57.8 0.0 2.5 3 0 0 3 3 3 1 AIR synthase related protein, N-terminal domain HupF_HypC PF01455.13 gi|296242360|ref|YP_003649847.1| - 1.4e-19 69.8 0.1 1.6e-19 69.6 0.1 1.1 1 0 0 1 1 1 1 HupF/HypC family KOW PF00467.24 gi|296242360|ref|YP_003649847.1| - 0.031 13.9 2.2 3.1 7.6 0.0 2.7 2 1 0 2 2 2 0 KOW motif Sua5_yciO_yrdC PF01300.13 gi|296242361|ref|YP_003649848.1| - 1.6e-41 141.5 0.0 2.5e-41 140.8 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|296242361|ref|YP_003649848.1| - 5.1e-30 102.5 6.5 1.3e-14 53.3 1.0 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|296242361|ref|YP_003649848.1| - 1.2e-18 66.9 0.0 2.4e-18 66.0 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase DUF4428 PF14471.1 gi|296242361|ref|YP_003649848.1| - 0.0044 16.7 0.0 3.7 7.3 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) Peptidase_M22 PF00814.20 gi|296242361|ref|YP_003649848.1| - 0.1 12.0 0.0 0.42 10.0 0.0 1.9 2 0 0 2 2 2 0 Glycoprotease family Oxidored_q6 PF01058.17 gi|296242362|ref|YP_003649849.1| - 2.6e-28 98.2 0.0 3.2e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_30kDa PF00329.14 gi|296242363|ref|YP_003649850.1| - 9.4e-19 67.5 0.0 1.2e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Complex1_49kDa PF00346.14 gi|296242364|ref|YP_003649851.1| - 3.9e-47 160.5 0.1 1e-30 106.6 0.1 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|296242364|ref|YP_003649851.1| - 1.2e-11 44.0 4.8 9.2e-10 37.8 0.4 3.1 2 1 1 3 3 3 2 Nickel-dependent hydrogenase Fer4 PF00037.22 gi|296242365|ref|YP_003649852.1| - 8e-14 50.5 9.6 1.6e-07 30.6 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|296242365|ref|YP_003649852.1| - 3.5e-11 43.2 6.6 5.2e-11 42.7 4.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242365|ref|YP_003649852.1| - 2.2e-10 40.1 6.1 6.6e-05 22.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|296242365|ref|YP_003649852.1| - 4.3e-10 39.2 4.2 8.2e-06 25.5 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296242365|ref|YP_003649852.1| - 4.4e-10 38.8 9.2 3.7e-05 23.3 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|296242365|ref|YP_003649852.1| - 9.2e-10 38.6 7.5 1.3e-09 38.1 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296242365|ref|YP_003649852.1| - 1.9e-09 36.9 11.2 8.6e-06 25.3 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|296242365|ref|YP_003649852.1| - 6.7e-08 32.7 3.0 0.0045 17.3 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296242365|ref|YP_003649852.1| - 1e-07 32.2 1.9 0.0071 16.7 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242365|ref|YP_003649852.1| - 5.3e-07 30.2 16.4 6e-06 26.9 5.3 1.7 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|296242365|ref|YP_003649852.1| - 1.2e-05 25.2 10.6 0.00037 20.4 8.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|296242365|ref|YP_003649852.1| - 1.6e-05 25.1 13.4 0.00088 19.6 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|296242365|ref|YP_003649852.1| - 0.00034 20.7 12.2 0.04 14.2 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|296242365|ref|YP_003649852.1| - 0.0004 20.9 3.1 0.49 10.9 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|296242365|ref|YP_003649852.1| - 0.074 13.4 5.6 1.9 8.9 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain NCD3G PF07562.9 gi|296242365|ref|YP_003649852.1| - 0.65 9.7 6.0 6.5 6.5 0.1 2.4 2 1 0 2 2 2 0 Nine Cysteines Domain of family 3 GPCR MrpF_PhaF PF04066.8 gi|296242366|ref|YP_003649853.1| - 8e-06 26.0 2.6 8e-06 26.0 1.8 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) YndJ PF14158.1 gi|296242366|ref|YP_003649853.1| - 0.0099 14.9 0.3 0.011 14.8 0.2 1.0 1 0 0 1 1 1 1 YndJ-like protein DUF983 PF06170.7 gi|296242366|ref|YP_003649853.1| - 0.41 10.7 0.2 0.41 10.7 0.2 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF983) PhaG_MnhG_YufB PF03334.9 gi|296242367|ref|YP_003649854.1| - 5.5e-17 61.5 7.9 7.3e-17 61.1 5.5 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF4040 PF13244.1 gi|296242368|ref|YP_003649855.1| - 1.8e-13 50.2 1.4 2.3e-13 49.9 0.9 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) CreD PF06123.7 gi|296242368|ref|YP_003649855.1| - 0.053 12.0 4.5 0.059 11.9 3.1 1.1 1 0 0 1 1 1 0 Inner membrane protein CreD LAB_N PF07578.6 gi|296242368|ref|YP_003649855.1| - 0.12 12.3 2.1 0.31 10.9 0.1 2.0 1 1 1 2 2 2 0 Lipid A Biosynthesis N-terminal domain Trep_Strep PF09605.5 gi|296242368|ref|YP_003649855.1| - 1.5 8.4 8.7 0.17 11.5 2.6 1.7 1 1 1 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) MnhB PF04039.8 gi|296242369|ref|YP_003649856.1| - 5.1e-14 52.4 18.7 5.1e-14 52.4 13.0 2.7 3 1 0 3 3 3 1 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q2 PF00420.19 gi|296242370|ref|YP_003649857.1| - 8.3e-21 73.3 0.1 1.1e-20 73.0 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Cyt_c_ox_IV PF12270.3 gi|296242370|ref|YP_003649857.1| - 0.045 13.4 0.6 0.074 12.8 0.1 1.5 1 1 0 1 1 1 0 Cytochrome c oxidase subunit IV TraQ PF09679.5 gi|296242370|ref|YP_003649857.1| - 0.091 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin chaperone (TraQ) FTSW_RODA_SPOVE PF01098.14 gi|296242370|ref|YP_003649857.1| - 0.13 10.9 2.4 0.2 10.4 1.6 1.4 1 1 0 1 1 1 0 Cell cycle protein PIG-P PF08510.7 gi|296242370|ref|YP_003649857.1| - 0.3 10.7 0.1 0.3 10.7 0.1 2.0 2 1 0 2 2 2 0 PIG-P MNHE PF01899.11 gi|296242371|ref|YP_003649858.1| - 5.8e-43 146.2 1.3 6.7e-43 146.0 0.9 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit 5TM-5TMR_LYT PF07694.7 gi|296242371|ref|YP_003649858.1| - 0.00015 21.1 1.5 0.0002 20.7 1.0 1.1 1 0 0 1 1 1 1 5TMR of 5TMR-LYT DUF318 PF03773.8 gi|296242371|ref|YP_003649858.1| - 0.00042 19.3 1.4 0.00047 19.2 1.0 1.1 1 0 0 1 1 1 1 Predicted permease ATP_synt_I PF03899.10 gi|296242371|ref|YP_003649858.1| - 0.062 13.4 5.0 0.11 12.7 3.5 1.3 1 0 0 1 1 1 0 ATP synthase I chain DUF1129 PF06570.6 gi|296242371|ref|YP_003649858.1| - 0.09 12.0 1.7 0.14 11.4 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) Oxidored_q1 PF00361.15 gi|296242372|ref|YP_003649859.1| - 1.8e-51 174.9 17.9 1.8e-51 174.9 12.4 2.6 2 1 1 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains 7TM_GPCR_Srw PF10324.4 gi|296242373|ref|YP_003649860.1| - 0.092 11.8 2.5 0.27 10.3 0.0 2.0 2 0 0 2 2 2 0 Serpentine type 7TM GPCR chemoreceptor Srw GP41 PF00517.12 gi|296242373|ref|YP_003649860.1| - 0.11 12.0 1.0 0.18 11.3 0.7 1.3 1 0 0 1 1 1 0 Retroviral envelope protein DUF3671 PF12420.3 gi|296242373|ref|YP_003649860.1| - 4.3 7.3 5.8 16 5.5 2.7 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF2830 PF11125.3 gi|296242373|ref|YP_003649860.1| - 9.2 6.0 7.2 51 3.6 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2830) NADHdh PF00146.16 gi|296242374|ref|YP_003649861.1| - 4.5e-26 91.6 21.7 5.2e-26 91.4 15.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Thioredoxin_7 PF13899.1 gi|296242375|ref|YP_003649862.1| - 0.00093 19.1 0.1 0.0015 18.4 0.1 1.4 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|296242375|ref|YP_003649862.1| - 0.0013 18.7 0.0 0.0029 17.6 0.0 1.5 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|296242375|ref|YP_003649862.1| - 0.0049 17.0 0.3 0.014 15.5 0.2 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|296242375|ref|YP_003649862.1| - 0.029 14.3 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin Thioredoxin_3 PF13192.1 gi|296242375|ref|YP_003649862.1| - 0.037 13.8 0.0 0.058 13.2 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin domain AhpC-TSA PF00578.16 gi|296242375|ref|YP_003649862.1| - 0.089 12.4 0.1 5 6.8 0.0 2.1 2 0 0 2 2 2 0 AhpC/TSA family DsbD PF02683.10 gi|296242376|ref|YP_003649863.1| - 2.9e-13 49.9 16.1 3.4e-13 49.7 11.2 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DHH PF01368.15 gi|296242377|ref|YP_003649864.1| - 7.1e-08 32.2 0.0 1.1e-06 28.4 0.0 2.1 1 1 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|296242377|ref|YP_003649864.1| - 0.0035 16.9 0.0 0.0065 16.1 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain Glyco_hydro_57 PF03065.10 gi|296242378|ref|YP_003649865.1| - 3e-39 134.9 4.5 4.9e-39 134.2 3.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glycos_transf_1 PF00534.15 gi|296242379|ref|YP_003649866.1| - 8.9e-24 83.8 0.0 2.2e-23 82.5 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|296242379|ref|YP_003649866.1| - 1.6e-20 73.6 0.0 3.7e-20 72.4 0.0 1.6 2 0 0 2 2 2 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|296242379|ref|YP_003649866.1| - 5.1e-14 52.5 0.0 1.9e-13 50.6 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|296242379|ref|YP_003649866.1| - 8.2e-06 26.0 0.0 4.1e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|296242379|ref|YP_003649866.1| - 3e-05 24.2 0.0 0.00014 22.0 0.0 2.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|296242379|ref|YP_003649866.1| - 0.00055 19.6 0.0 0.39 10.4 0.0 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 DUF1926 PF09095.6 gi|296242380|ref|YP_003649867.1| - 1.5e-43 149.0 0.1 2e-23 83.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF1926) Glyco_hydro_57 PF03065.10 gi|296242380|ref|YP_003649867.1| - 2.4e-33 115.5 1.5 4.2e-32 111.4 1.0 2.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 DUF1925 PF09094.6 gi|296242380|ref|YP_003649867.1| - 3e-31 107.2 1.2 5.7e-31 106.3 0.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1925) Glyco_hydro_38 PF01074.17 gi|296242380|ref|YP_003649867.1| - 0.003 16.8 0.0 0.0053 16.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_57 PF03065.10 gi|296242381|ref|YP_003649868.1| - 4.8e-72 242.8 0.2 3e-71 240.2 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 APH PF01636.18 gi|296242382|ref|YP_003649869.1| - 6.7e-05 22.7 0.0 0.00014 21.7 0.0 1.5 1 1 0 1 1 1 1 Phosphotransferase enzyme family HTH_DeoR PF08220.7 gi|296242383|ref|YP_003649870.1| - 3.6e-06 26.3 0.0 8.4e-06 25.2 0.0 1.7 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|296242383|ref|YP_003649870.1| - 2e-05 23.8 0.0 4.3e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|296242383|ref|YP_003649870.1| - 2.1e-05 24.2 0.4 7e-05 22.5 0.1 2.2 2 1 0 2 2 2 1 Winged helix-turn-helix MerR PF00376.18 gi|296242383|ref|YP_003649870.1| - 4.7e-05 22.8 0.1 0.00024 20.6 0.0 2.1 2 0 0 2 2 2 1 MerR family regulatory protein HTH_23 PF13384.1 gi|296242383|ref|YP_003649870.1| - 0.00065 19.2 0.0 0.0021 17.6 0.0 1.8 2 0 0 2 2 1 1 Homeodomain-like domain FeoC PF09012.5 gi|296242383|ref|YP_003649870.1| - 0.0007 19.2 0.2 0.031 13.9 0.0 2.8 2 1 1 3 3 3 1 FeoC like transcriptional regulator HTH_IclR PF09339.5 gi|296242383|ref|YP_003649870.1| - 0.0009 18.7 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.16 gi|296242383|ref|YP_003649870.1| - 0.00092 18.5 0.4 0.0041 16.5 0.0 2.2 3 0 0 3 3 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|296242383|ref|YP_003649870.1| - 0.001 18.9 0.4 0.0047 16.8 0.1 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|296242383|ref|YP_003649870.1| - 0.0013 18.3 1.0 0.0042 16.7 0.0 2.3 3 0 0 3 3 2 1 HTH domain HTH_Mga PF08280.6 gi|296242383|ref|YP_003649870.1| - 0.0013 18.4 0.0 0.0035 17.0 0.0 1.8 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.2 gi|296242383|ref|YP_003649870.1| - 0.0016 18.6 1.9 0.0036 17.5 0.0 2.6 3 1 1 4 4 2 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|296242383|ref|YP_003649870.1| - 0.0028 17.2 0.1 0.0047 16.4 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.14 gi|296242383|ref|YP_003649870.1| - 0.0032 17.1 0.1 0.0063 16.1 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MerR_1 PF13411.1 gi|296242383|ref|YP_003649870.1| - 0.0033 17.1 0.1 0.013 15.2 0.0 2.1 2 1 0 2 2 2 1 MerR HTH family regulatory protein Rrf2 PF02082.15 gi|296242383|ref|YP_003649870.1| - 0.0035 17.4 0.1 0.007 16.4 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_36 PF13730.1 gi|296242383|ref|YP_003649870.1| - 0.0041 17.2 0.1 0.038 14.1 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain FaeA PF04703.7 gi|296242383|ref|YP_003649870.1| - 0.007 16.5 0.0 0.017 15.2 0.0 1.7 1 0 0 1 1 1 1 FaeA-like protein HTH_8 PF02954.14 gi|296242383|ref|YP_003649870.1| - 0.0074 15.8 0.0 0.016 14.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family APC2 PF08672.6 gi|296242383|ref|YP_003649870.1| - 0.0087 16.3 0.0 1.3 9.3 0.0 3.1 3 0 0 3 3 3 1 Anaphase promoting complex (APC) subunit 2 HTH_28 PF13518.1 gi|296242383|ref|YP_003649870.1| - 0.009 16.0 0.0 0.02 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain NUMOD1 PF07453.8 gi|296242383|ref|YP_003649870.1| - 0.0098 15.7 0.0 0.038 13.8 0.0 2.1 1 0 0 1 1 1 1 NUMOD1 domain Topoisom_bac PF01131.15 gi|296242383|ref|YP_003649870.1| - 0.011 14.5 0.3 0.017 13.9 0.2 1.2 1 0 0 1 1 1 0 DNA topoisomerase HTH_27 PF13463.1 gi|296242383|ref|YP_003649870.1| - 0.012 15.9 0.1 0.044 14.1 0.0 2.0 3 0 0 3 3 1 0 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|296242383|ref|YP_003649870.1| - 0.017 14.9 0.4 0.18 11.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix HTH_5 PF01022.15 gi|296242383|ref|YP_003649870.1| - 0.025 14.2 0.6 0.067 12.8 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|296242383|ref|YP_003649870.1| - 0.031 13.9 0.0 0.058 13.0 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|296242383|ref|YP_003649870.1| - 0.037 13.8 0.0 0.072 12.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|296242383|ref|YP_003649870.1| - 0.044 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Mnd1 PF03962.10 gi|296242383|ref|YP_003649870.1| - 0.047 13.3 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 Mnd1 family HTH_1 PF00126.22 gi|296242383|ref|YP_003649870.1| - 0.049 13.3 0.0 0.094 12.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family PCI PF01399.22 gi|296242383|ref|YP_003649870.1| - 0.05 13.9 0.1 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 PCI domain Ribosomal_S19e PF01090.14 gi|296242383|ref|YP_003649870.1| - 0.052 12.9 0.1 0.079 12.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_20 PF12840.2 gi|296242383|ref|YP_003649870.1| - 0.062 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain SMC_Nse1 PF07574.8 gi|296242383|ref|YP_003649870.1| - 0.1 12.2 0.0 0.49 9.9 0.0 1.9 1 1 0 2 2 2 0 Nse1 non-SMC component of SMC5-6 complex MotA_activ PF09114.5 gi|296242383|ref|YP_003649870.1| - 0.1 12.3 1.0 0.17 11.6 0.3 1.7 2 0 0 2 2 2 0 Transcription factor MotA, activation domain MarR PF01047.17 gi|296242383|ref|YP_003649870.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 MarR family ABC2_membrane_3 PF12698.2 gi|296242384|ref|YP_003649871.1| - 2.8e-21 75.9 21.5 3.4e-21 75.6 14.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|296242384|ref|YP_003649871.1| - 2.7e-18 65.8 17.1 4e-18 65.2 11.8 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|296242384|ref|YP_003649871.1| - 2.1e-07 30.3 31.2 6.6e-07 28.7 21.6 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4079 PF13301.1 gi|296242384|ref|YP_003649871.1| - 0.026 14.5 4.4 0.84 9.6 0.0 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF4079) ABC_tran PF00005.22 gi|296242385|ref|YP_003649872.1| - 3.8e-28 98.5 0.0 5.1e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242385|ref|YP_003649872.1| - 6.7e-12 45.9 0.0 1.7e-05 24.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|296242385|ref|YP_003649872.1| - 0.012 14.7 0.0 0.12 11.3 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|296242385|ref|YP_003649872.1| - 0.023 13.1 0.0 1.8 6.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|296242385|ref|YP_003649872.1| - 0.024 14.9 0.1 0.039 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|296242385|ref|YP_003649872.1| - 0.028 14.1 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_30 PF13604.1 gi|296242385|ref|YP_003649872.1| - 0.052 13.1 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|296242385|ref|YP_003649872.1| - 0.057 12.9 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|296242385|ref|YP_003649872.1| - 0.1 11.8 0.0 6.3 5.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|296242385|ref|YP_003649872.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IFT20 PF14931.1 gi|296242386|ref|YP_003649873.1| - 0.0019 18.1 0.7 0.013 15.3 0.1 2.1 2 0 0 2 2 2 1 Intraflagellar transport complex B, subunit 20 GSCFA PF08885.6 gi|296242386|ref|YP_003649873.1| - 0.015 14.8 0.2 0.051 13.1 0.0 1.7 1 1 1 2 2 2 0 GSCFA family DUF1997 PF09366.5 gi|296242386|ref|YP_003649873.1| - 0.074 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1997) Aldolase_2 PF10120.4 gi|296242387|ref|YP_003649874.1| - 1.6e-30 105.7 0.0 3.1e-30 104.8 0.0 1.5 2 0 0 2 2 2 1 Putative aldolase HTH_37 PF13744.1 gi|296242387|ref|YP_003649874.1| - 0.00013 21.6 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|296242387|ref|YP_003649874.1| - 0.0076 15.6 0.1 0.018 14.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF2481 PF10654.4 gi|296242387|ref|YP_003649874.1| - 0.038 13.6 0.0 0.59 9.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2481) MarR_2 PF12802.2 gi|296242387|ref|YP_003649874.1| - 0.07 12.8 0.1 0.19 11.4 0.1 1.7 1 0 0 1 1 1 0 MarR family ApbA_C PF08546.6 gi|296242388|ref|YP_003649875.1| - 6.6e-30 103.6 0.0 1.1e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|296242388|ref|YP_003649875.1| - 1.2e-23 83.2 0.0 2.1e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|296242388|ref|YP_003649875.1| - 2.5e-09 37.0 0.0 7.9e-09 35.4 0.0 1.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|296242388|ref|YP_003649875.1| - 3e-06 27.5 0.0 4.2e-05 23.8 0.0 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|296242388|ref|YP_003649875.1| - 0.00059 19.9 0.0 0.0011 19.0 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Nif11 PF07862.6 gi|296242388|ref|YP_003649875.1| - 0.024 14.5 0.2 0.1 12.5 0.1 2.0 1 1 0 1 1 1 0 Nitrogen fixation protein of unknown function Pantoate_transf PF02548.10 gi|296242389|ref|YP_003649876.1| - 2.6e-105 351.2 0.3 2.9e-105 351.0 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|296242389|ref|YP_003649876.1| - 6.4e-06 25.5 3.3 0.0015 17.8 0.3 2.9 1 1 2 3 3 3 3 Phosphoenolpyruvate phosphomutase ABC2_membrane_3 PF12698.2 gi|296242390|ref|YP_003649877.1| - 1.9e-16 60.0 23.4 1.9e-16 60.0 16.2 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|296242390|ref|YP_003649877.1| - 4.2e-10 38.9 25.7 2.4e-09 36.4 17.4 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|296242390|ref|YP_003649877.1| - 4.2e-06 26.1 32.5 7e-06 25.3 20.8 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|296242390|ref|YP_003649877.1| - 0.0053 15.9 17.4 0.0053 15.9 12.1 3.7 2 1 1 3 3 3 2 ABC-2 type transporter SyrA PF11089.3 gi|296242390|ref|YP_003649877.1| - 0.037 13.8 1.3 0.037 13.8 0.9 2.8 2 0 0 2 2 2 0 Exopolysaccharide production repressor ABC_tran PF00005.22 gi|296242391|ref|YP_003649878.1| - 4.7e-25 88.4 0.0 7e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242391|ref|YP_003649878.1| - 2.6e-20 73.5 0.1 5.4e-19 69.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|296242391|ref|YP_003649878.1| - 4.2e-05 22.8 0.0 0.084 12.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|296242391|ref|YP_003649878.1| - 0.00022 20.6 0.0 0.00043 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|296242391|ref|YP_003649878.1| - 0.0016 18.7 0.8 0.0039 17.5 0.6 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|296242391|ref|YP_003649878.1| - 0.0056 16.6 0.0 0.0077 16.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|296242391|ref|YP_003649878.1| - 0.0059 16.7 0.1 0.034 14.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|296242391|ref|YP_003649878.1| - 0.0071 17.1 0.1 0.0089 16.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|296242391|ref|YP_003649878.1| - 0.0074 15.3 0.0 1.5 7.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_19 PF13245.1 gi|296242391|ref|YP_003649878.1| - 0.0085 15.8 0.1 0.018 14.7 0.1 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|296242391|ref|YP_003649878.1| - 0.015 15.4 0.1 0.024 14.8 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|296242391|ref|YP_003649878.1| - 0.016 14.6 0.1 0.038 13.4 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|296242391|ref|YP_003649878.1| - 0.019 14.6 0.1 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|296242391|ref|YP_003649878.1| - 0.021 14.3 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|296242391|ref|YP_003649878.1| - 0.025 13.0 0.0 0.73 8.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|296242391|ref|YP_003649878.1| - 0.038 13.6 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_18 PF13238.1 gi|296242391|ref|YP_003649878.1| - 0.052 13.8 0.0 0.1 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|296242391|ref|YP_003649878.1| - 0.054 13.4 0.0 0.63 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|296242391|ref|YP_003649878.1| - 0.092 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|296242391|ref|YP_003649878.1| - 0.097 12.3 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|296242391|ref|YP_003649878.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.15 gi|296242391|ref|YP_003649878.1| - 0.19 10.4 0.0 0.21 10.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit PhosphMutase PF10143.4 gi|296242392|ref|YP_003649879.1| - 1.7e-53 180.8 0.0 2.6e-53 180.1 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|296242392|ref|YP_003649879.1| - 1e-30 106.9 0.0 3.1e-30 105.4 0.0 1.6 1 1 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|296242392|ref|YP_003649879.1| - 0.0041 16.5 0.0 0.012 14.9 0.0 1.7 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase 2-Hacid_dh_C PF02826.14 gi|296242392|ref|YP_003649879.1| - 0.16 11.1 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF137 PF02006.11 gi|296242394|ref|YP_003649881.1| - 1.7e-78 262.0 1.3 2.1e-78 261.7 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 DUF4116 PF13475.1 gi|296242394|ref|YP_003649881.1| - 0.13 11.8 0.2 0.63 9.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4116) DFP PF04127.10 gi|296242396|ref|YP_003649883.1| - 1.2e-51 175.0 0.0 5.4e-51 172.8 0.0 1.9 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|296242396|ref|YP_003649883.1| - 4.7e-30 103.9 0.1 8.3e-30 103.1 0.1 1.4 1 0 0 1 1 1 1 Flavoprotein Acetyltransf_1 PF00583.19 gi|296242397|ref|YP_003649884.1| - 4.6e-19 68.2 0.1 8.4e-19 67.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|296242397|ref|YP_003649884.1| - 3.1e-11 42.8 0.1 4.7e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|296242397|ref|YP_003649884.1| - 9.1e-11 41.7 0.1 1.4e-10 41.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|296242397|ref|YP_003649884.1| - 7.6e-10 38.9 0.0 1.1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|296242397|ref|YP_003649884.1| - 1e-08 35.2 0.0 1.5e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|296242397|ref|YP_003649884.1| - 1.1e-08 34.9 0.0 2.9e-08 33.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|296242397|ref|YP_003649884.1| - 7.3e-07 29.1 0.0 1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|296242397|ref|YP_003649884.1| - 3.5e-06 27.2 0.0 9.1e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain tRNA-synt_2 PF00152.15 gi|296242398|ref|YP_003649885.1| - 1.5e-84 283.6 0.0 2.2e-84 283.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|296242398|ref|YP_003649885.1| - 4.6e-10 39.2 0.4 7.5e-10 38.5 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|296242398|ref|YP_003649885.1| - 0.0051 16.0 0.1 0.048 12.8 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) HhH-GPD PF00730.20 gi|296242399|ref|YP_003649886.1| - 1.3e-21 76.8 0.0 2.1e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|296242399|ref|YP_003649886.1| - 1.6e-08 33.7 0.3 5.5e-08 32.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|296242399|ref|YP_003649886.1| - 0.00049 20.1 2.8 0.00082 19.4 1.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Adenine_glyco PF03352.8 gi|296242399|ref|YP_003649886.1| - 0.0023 17.4 0.1 0.0032 16.9 0.1 1.3 1 0 0 1 1 1 1 Methyladenine glycosylase MSC PF09402.5 gi|296242399|ref|YP_003649886.1| - 0.011 14.5 0.1 0.022 13.4 0.0 1.5 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain HHH_5 PF14520.1 gi|296242399|ref|YP_003649886.1| - 0.012 15.8 0.2 0.13 12.4 0.2 2.3 1 1 0 1 1 1 0 Helix-hairpin-helix domain zf-nanos PF05741.8 gi|296242399|ref|YP_003649886.1| - 0.21 11.6 1.5 0.21 11.5 0.2 1.6 2 0 0 2 2 2 0 Nanos RNA binding domain Met_10 PF02475.11 gi|296242400|ref|YP_003649887.1| - 1.3e-58 197.9 0.0 1.8e-58 197.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein TRM PF02005.11 gi|296242400|ref|YP_003649887.1| - 3.5e-07 29.4 0.0 4.6e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.5 gi|296242400|ref|YP_003649887.1| - 2.9e-06 26.9 0.0 4.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|296242400|ref|YP_003649887.1| - 3.4e-05 23.0 0.0 5.6e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|296242400|ref|YP_003649887.1| - 5.3e-05 22.6 0.0 0.00011 21.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|296242400|ref|YP_003649887.1| - 0.00012 22.0 0.0 0.00018 21.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|296242400|ref|YP_003649887.1| - 0.0012 18.3 0.0 0.0016 17.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_18 PF12847.2 gi|296242400|ref|YP_003649887.1| - 0.0012 19.3 0.0 0.002 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|296242400|ref|YP_003649887.1| - 0.004 16.7 0.0 0.007 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltrans_SAM PF10672.4 gi|296242400|ref|YP_003649887.1| - 0.022 13.6 0.0 0.028 13.2 0.0 1.2 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase PhoH PF02562.11 gi|296242401|ref|YP_003649888.1| - 8.5e-46 155.7 0.0 1.2e-45 155.2 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_5 PF13184.1 gi|296242401|ref|YP_003649888.1| - 3.2e-10 39.6 0.2 1.6e-08 34.2 0.0 2.5 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.12 gi|296242401|ref|YP_003649888.1| - 9.5e-09 34.6 1.0 3.3e-08 32.9 0.1 2.2 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|296242401|ref|YP_003649888.1| - 3e-07 29.9 0.3 4.1e-05 23.1 0.0 2.6 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|296242401|ref|YP_003649888.1| - 0.00028 20.4 1.7 0.006 16.2 0.4 2.6 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|296242401|ref|YP_003649888.1| - 0.0086 15.6 1.3 0.033 13.8 0.2 2.5 3 0 0 3 3 3 1 KH domain DUF2774 PF11242.3 gi|296242401|ref|YP_003649888.1| - 0.011 15.6 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2774) DEAD PF00270.24 gi|296242401|ref|YP_003649888.1| - 0.045 13.2 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|296242401|ref|YP_003649888.1| - 0.059 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|296242401|ref|YP_003649888.1| - 0.068 12.2 0.0 0.13 11.3 0.0 1.4 1 0 0 1 1 1 0 KaiC ABC_tran PF00005.22 gi|296242401|ref|YP_003649888.1| - 0.11 12.7 0.1 0.43 10.8 0.0 1.9 2 0 0 2 2 2 0 ABC transporter PCNA_N PF00705.13 gi|296242402|ref|YP_003649889.1| - 1.5e-16 60.0 0.1 1.7e-15 56.6 0.0 2.2 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|296242402|ref|YP_003649889.1| - 1.9e-06 27.7 0.0 3e-05 23.9 0.0 2.4 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|296242402|ref|YP_003649889.1| - 0.00041 19.5 0.0 0.00051 19.2 0.0 1.3 1 0 0 1 1 1 1 Rad9 RuvA_C PF07499.8 gi|296242402|ref|YP_003649889.1| - 0.061 13.4 0.0 0.24 11.6 0.0 1.9 2 0 0 2 2 2 0 RuvA, C-terminal domain Mrr_cat PF04471.7 gi|296242403|ref|YP_003649890.1| - 0.0011 18.7 0.0 0.002 17.8 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease HTH_Crp_2 PF13545.1 gi|296242403|ref|YP_003649890.1| - 0.082 12.7 0.1 0.23 11.3 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NERD PF08378.6 gi|296242403|ref|YP_003649890.1| - 0.085 13.1 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Nuclease-related domain DS PF01916.12 gi|296242404|ref|YP_003649891.1| - 7.7e-80 268.1 0.0 9.7e-80 267.8 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase DUF1743 PF08489.6 gi|296242405|ref|YP_003649892.1| - 3.3e-35 120.3 0.0 5.1e-35 119.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|296242405|ref|YP_003649892.1| - 1e-05 25.2 0.0 1.9e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|296242405|ref|YP_003649892.1| - 0.00037 20.1 1.3 0.00088 18.8 0.9 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|296242405|ref|YP_003649892.1| - 0.0079 15.3 1.8 0.24 10.6 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|296242405|ref|YP_003649892.1| - 0.0079 15.9 0.6 0.016 14.9 0.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon C1_1 PF00130.17 gi|296242405|ref|YP_003649892.1| - 0.012 15.3 0.6 0.028 14.1 0.4 1.6 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.1 gi|296242405|ref|YP_003649892.1| - 0.057 12.9 2.5 0.97 9.0 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|296242405|ref|YP_003649892.1| - 0.085 12.6 0.9 0.18 11.6 0.6 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|296242405|ref|YP_003649892.1| - 0.097 12.3 1.5 0.2 11.3 1.0 1.6 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF1610 PF07754.6 gi|296242405|ref|YP_003649892.1| - 0.87 9.7 9.0 0.4 10.8 4.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.6 gi|296242405|ref|YP_003649892.1| - 0.95 9.0 4.5 2.2 7.8 3.1 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Aminotran_1_2 PF00155.16 gi|296242406|ref|YP_003649893.1| - 2.9e-48 164.6 0.0 3.6e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|296242406|ref|YP_003649893.1| - 7.8e-05 21.8 0.0 0.0002 20.5 0.0 1.6 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|296242406|ref|YP_003649893.1| - 0.0005 18.4 0.0 0.00072 17.9 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme RolB_RolC PF02027.12 gi|296242406|ref|YP_003649893.1| - 0.061 12.4 0.1 0.17 11.0 0.0 1.7 2 0 0 2 2 2 0 RolB/RolC glucosidase family HD_3 PF13023.1 gi|296242407|ref|YP_003649894.1| - 3.7e-16 59.3 0.0 7.6e-16 58.2 0.0 1.6 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|296242407|ref|YP_003649894.1| - 2.3e-06 27.6 0.1 9.2e-06 25.6 0.1 1.9 1 1 0 1 1 1 1 HD domain EntA_Immun PF08951.5 gi|296242407|ref|YP_003649894.1| - 0.24 11.5 5.8 5.5 7.2 0.0 2.6 3 0 0 3 3 3 0 Enterocin A Immunity Peptidase_M55 PF04951.8 gi|296242408|ref|YP_003649895.1| - 2.9e-77 259.4 0.0 3.3e-77 259.2 0.0 1.0 1 0 0 1 1 1 1 D-aminopeptidase TFIIE-A_C-term PF11521.3 gi|296242408|ref|YP_003649895.1| - 0.058 13.3 0.0 16 5.4 0.0 2.3 2 0 0 2 2 2 0 C-terminal general transcription factor TFIIE alpha DUF553 PF04473.7 gi|296242409|ref|YP_003649896.1| - 3.6e-06 26.3 0.1 5.5e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 Transglutaminase-like domain IncA PF04156.9 gi|296242409|ref|YP_003649896.1| - 0.003 17.1 0.4 0.005 16.4 0.3 1.3 1 0 0 1 1 1 1 IncA protein DUF972 PF06156.8 gi|296242409|ref|YP_003649896.1| - 0.0043 17.3 1.2 0.0072 16.6 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF972) Peptidase_C93 PF06035.6 gi|296242409|ref|YP_003649896.1| - 0.0051 16.2 0.0 0.0079 15.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial transglutaminase-like cysteine proteinase BTLCP APG6 PF04111.7 gi|296242409|ref|YP_003649896.1| - 0.0077 15.3 0.7 0.012 14.7 0.5 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 DUF904 PF06005.7 gi|296242409|ref|YP_003649896.1| - 0.018 15.3 3.5 0.018 15.3 2.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Osmo_CC PF08946.5 gi|296242409|ref|YP_003649896.1| - 0.035 14.1 2.4 0.081 12.9 1.7 1.5 1 0 0 1 1 1 0 Osmosensory transporter coiled coil FlaC_arch PF05377.6 gi|296242409|ref|YP_003649896.1| - 0.04 13.8 0.9 0.093 12.6 0.6 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) TSC22 PF01166.13 gi|296242409|ref|YP_003649896.1| - 0.041 13.8 2.3 0.06 13.3 0.3 2.2 1 1 1 2 2 2 0 TSC-22/dip/bun family DivIC PF04977.10 gi|296242409|ref|YP_003649896.1| - 0.067 12.6 1.6 0.1 12.0 0.4 1.8 2 0 0 2 2 2 0 Septum formation initiator FliD_N PF02465.13 gi|296242409|ref|YP_003649896.1| - 0.11 12.8 0.2 0.6 10.5 0.1 2.0 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus bZIP_1 PF00170.16 gi|296242409|ref|YP_003649896.1| - 0.85 9.6 4.7 2.5 8.0 3.2 1.8 1 1 1 2 2 2 0 bZIP transcription factor HALZ PF02183.13 gi|296242409|ref|YP_003649896.1| - 3.9 7.2 12.7 0.6 9.8 3.9 2.5 2 1 1 3 3 3 0 Homeobox associated leucine zipper bZIP_2 PF07716.10 gi|296242409|ref|YP_003649896.1| - 7 6.5 6.2 2 8.3 0.1 2.4 2 1 1 3 3 3 0 Basic region leucine zipper Macro PF01661.16 gi|296242410|ref|YP_003649897.1| - 1.2e-26 92.9 0.1 1.6e-26 92.5 0.1 1.1 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.1 gi|296242410|ref|YP_003649897.1| - 0.024 13.7 0.1 0.079 12.0 0.1 1.7 1 1 0 1 1 1 0 Macro-like domain VPEP PF07589.6 gi|296242410|ref|YP_003649897.1| - 8.1 6.5 5.9 11 6.1 0.2 2.3 2 0 0 2 2 2 0 PEP-CTERM motif Rib_5-P_isom_A PF06026.9 gi|296242411|ref|YP_003649898.1| - 5.7e-45 152.7 0.0 7e-45 152.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DUF457 PF04307.9 gi|296242412|ref|YP_003649899.1| - 6.1e-22 77.6 6.7 9.2e-22 77.0 4.6 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|296242412|ref|YP_003649899.1| - 3.4e-06 26.8 0.6 3.6e-06 26.7 0.4 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C Corona_S2 PF01601.11 gi|296242413|ref|YP_003649900.1| - 0.0028 15.8 1.4 0.0033 15.6 0.1 1.6 2 0 0 2 2 2 1 Coronavirus S2 glycoprotein IncA PF04156.9 gi|296242413|ref|YP_003649900.1| - 0.017 14.7 2.0 0.017 14.7 1.4 2.4 1 1 1 2 2 2 0 IncA protein Baculo_PEP_C PF04513.7 gi|296242413|ref|YP_003649900.1| - 0.043 13.6 6.3 0.035 13.9 1.5 2.5 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|296242413|ref|YP_003649900.1| - 0.061 12.2 0.8 0.11 11.4 0.6 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 P4Ha_N PF08336.6 gi|296242413|ref|YP_003649900.1| - 0.072 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Snapin_Pallidin PF14712.1 gi|296242413|ref|YP_003649900.1| - 0.077 13.3 1.5 0.19 12.0 1.0 1.6 1 0 0 1 1 1 0 Snapin/Pallidin Reo_sigmaC PF04582.7 gi|296242413|ref|YP_003649900.1| - 0.089 11.9 1.4 0.2 10.7 1.0 1.6 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Tropomyosin_1 PF12718.2 gi|296242413|ref|YP_003649900.1| - 0.22 11.3 1.8 0.39 10.5 1.2 1.3 1 0 0 1 1 1 0 Tropomyosin like TMF_DNA_bd PF12329.3 gi|296242413|ref|YP_003649900.1| - 0.23 11.2 2.2 0.43 10.4 1.5 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF972 PF06156.8 gi|296242413|ref|YP_003649900.1| - 2 8.7 4.5 0.61 10.4 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF972) IF-2B PF01008.12 gi|296242414|ref|YP_003649901.1| - 5.6e-51 173.1 0.0 7.6e-51 172.7 0.0 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family DEDD_Tnp_IS110 PF01548.12 gi|296242414|ref|YP_003649901.1| - 0.023 14.3 0.0 0.098 12.3 0.0 2.0 2 1 0 2 2 2 0 Transposase ThiG PF05690.9 gi|296242414|ref|YP_003649901.1| - 0.082 11.9 0.1 0.15 11.0 0.1 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG ATP-synt_ab PF00006.20 gi|296242414|ref|YP_003649901.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain IF-2B PF01008.12 gi|296242415|ref|YP_003649902.1| - 1e-86 290.4 1.0 1.2e-86 290.2 0.7 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DeoRC PF00455.17 gi|296242415|ref|YP_003649902.1| - 0.025 14.2 1.2 1 9.0 0.0 2.4 2 0 0 2 2 2 0 DeoR C terminal sensor domain Rrn6 PF10214.4 gi|296242416|ref|YP_003649903.1| - 0.042 11.9 0.0 0.042 11.9 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase I-specific transcription-initiation factor VASP_tetra PF08776.6 gi|296242416|ref|YP_003649903.1| - 0.051 12.8 1.3 0.67 9.3 0.7 2.2 2 0 0 2 2 2 0 VASP tetramerisation domain DUF59 PF01883.14 gi|296242417|ref|YP_003649904.1| - 3.1e-14 52.6 0.1 4e-14 52.3 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 HTH_34 PF13601.1 gi|296242417|ref|YP_003649904.1| - 0.085 12.9 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HemN_C PF06969.11 gi|296242417|ref|YP_003649904.1| - 0.12 12.4 0.1 0.68 10.0 0.0 2.1 1 1 1 2 2 2 0 HemN C-terminal domain tRNA-synt_2b PF00587.20 gi|296242418|ref|YP_003649905.1| - 3.7e-34 117.8 0.0 8.6e-34 116.5 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|296242418|ref|YP_003649905.1| - 7.3e-23 80.6 5.0 1.6e-22 79.5 3.5 1.6 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain TBPIP PF07106.8 gi|296242418|ref|YP_003649905.1| - 0.11 12.1 4.5 0.99 8.9 2.3 2.4 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) FliT PF05400.8 gi|296242418|ref|YP_003649905.1| - 8.2 6.9 10.4 9.1 6.7 4.5 2.7 3 0 0 3 3 3 0 Flagellar protein FliT Thioredoxin_3 PF13192.1 gi|296242419|ref|YP_003649906.1| - 2.1e-06 27.4 0.0 3e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain PfkB PF00294.19 gi|296242420|ref|YP_003649907.1| - 1.8e-06 27.3 0.0 2.4e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase YEATS PF03366.11 gi|296242420|ref|YP_003649907.1| - 0.03 14.0 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 YEATS family DUF3458 PF11940.3 gi|296242421|ref|YP_003649908.1| - 0.15 10.8 0.0 0.17 10.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3458) Lactamase_B_3 PF13483.1 gi|296242422|ref|YP_003649909.1| - 6.9e-38 129.9 0.0 9.3e-38 129.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|296242422|ref|YP_003649909.1| - 4.8e-14 52.3 0.2 3.5e-12 46.2 0.1 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF2325 PF10087.4 gi|296242422|ref|YP_003649909.1| - 0.0076 16.0 0.1 0.061 13.1 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2325) Lactamase_B PF00753.22 gi|296242422|ref|YP_003649909.1| - 0.033 13.8 3.6 0.72 9.4 1.4 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Glyco_tranf_2_3 PF13641.1 gi|296242423|ref|YP_003649910.1| - 9.1e-22 77.9 0.0 1.3e-21 77.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|296242423|ref|YP_003649910.1| - 2.6e-14 53.4 0.0 2.6e-14 53.4 0.0 2.2 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|296242423|ref|YP_003649910.1| - 7e-11 42.0 0.0 1.4e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|296242423|ref|YP_003649910.1| - 0.0028 16.7 0.0 0.0051 15.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|296242423|ref|YP_003649910.1| - 0.003 16.8 0.0 0.99 8.6 0.0 2.3 1 1 1 2 2 2 2 Glycosyl transferase family 21 Cellulose_synt PF03552.9 gi|296242423|ref|YP_003649910.1| - 0.031 12.5 0.4 0.05 11.9 0.3 1.2 1 0 0 1 1 1 0 Cellulose synthase DEAD_assoc PF08494.6 gi|296242424|ref|YP_003649911.1| - 9.1e-54 182.0 0.3 2.4e-53 180.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|296242424|ref|YP_003649911.1| - 5.3e-31 107.3 0.1 7.1e-30 103.7 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|296242424|ref|YP_003649911.1| - 1.2e-13 50.7 0.0 1.3e-12 47.4 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|296242424|ref|YP_003649911.1| - 4.8e-07 29.7 0.0 2.3e-06 27.5 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.24 gi|296242424|ref|YP_003649911.1| - 6.6e-05 23.1 7.2 0.39 10.9 0.6 4.1 2 2 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) SNF2_N PF00176.18 gi|296242424|ref|YP_003649911.1| - 0.0062 15.3 0.1 0.049 12.4 0.1 2.3 2 1 0 2 2 2 1 SNF2 family N-terminal domain AsnA PF03590.10 gi|296242424|ref|YP_003649911.1| - 0.0097 15.3 1.1 0.032 13.6 0.7 1.9 1 1 0 1 1 1 1 Aspartate-ammonia ligase AAA_16 PF13191.1 gi|296242424|ref|YP_003649911.1| - 0.032 14.2 0.0 0.17 11.8 0.0 2.2 1 1 1 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|296242424|ref|YP_003649911.1| - 0.057 13.5 4.1 11 6.1 0.0 4.1 3 1 1 4 4 4 0 AAA domain Sterol-sensing PF12349.3 gi|296242424|ref|YP_003649911.1| - 0.28 10.6 0.0 0.55 9.6 0.0 1.5 1 0 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation UvrD-helicase PF00580.16 gi|296242424|ref|YP_003649911.1| - 0.71 9.1 3.6 4.6 6.4 0.0 3.0 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain DUF2192 PF09958.4 gi|296242425|ref|YP_003649912.1| - 1.1e-77 260.3 5.9 1.3e-77 260.1 4.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) PhoU_div PF01865.11 gi|296242425|ref|YP_003649912.1| - 0.084 12.0 0.2 0.15 11.2 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF47 IF2_N PF04760.10 gi|296242426|ref|YP_003649913.1| - 0.075 12.6 1.3 2.8 7.6 0.0 2.7 3 0 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region Peptidase_C34 PF05413.6 gi|296242426|ref|YP_003649913.1| - 0.076 13.0 0.1 0.09 12.8 0.0 1.1 1 0 0 1 1 1 0 Putative closterovirus papain-like endopeptidase HTH_3 PF01381.17 gi|296242428|ref|YP_003649915.1| - 6.9e-05 22.6 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_Tnp_ISL3 PF13542.1 gi|296242428|ref|YP_003649915.1| - 0.00051 19.1 0.0 0.00087 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|296242428|ref|YP_003649915.1| - 0.00085 18.9 0.5 0.004 16.7 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_10 PF04967.7 gi|296242428|ref|YP_003649915.1| - 0.0097 15.4 0.1 0.03 13.8 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.1 gi|296242428|ref|YP_003649915.1| - 0.016 14.8 0.9 0.033 13.8 0.1 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_31 PF13560.1 gi|296242428|ref|YP_003649915.1| - 0.018 15.2 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MerR PF00376.18 gi|296242428|ref|YP_003649915.1| - 0.022 14.3 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein HTH_28 PF13518.1 gi|296242428|ref|YP_003649915.1| - 0.034 14.1 0.1 0.077 13.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|296242428|ref|YP_003649915.1| - 0.037 13.4 0.1 0.11 11.9 0.1 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|296242428|ref|YP_003649915.1| - 0.041 13.4 0.1 0.1 12.1 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|296242428|ref|YP_003649915.1| - 0.067 13.1 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Transposase LacI PF00356.16 gi|296242428|ref|YP_003649915.1| - 0.077 12.6 0.1 0.27 10.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family MerR_1 PF13411.1 gi|296242428|ref|YP_003649915.1| - 0.096 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_38 PF13936.1 gi|296242428|ref|YP_003649915.1| - 0.11 12.1 0.6 0.22 11.0 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|296242430|ref|YP_003649917.1| - 1.3e-39 136.1 0.0 1.5e-39 136.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|296242430|ref|YP_003649917.1| - 4.3e-07 28.8 0.0 7e-07 28.1 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.14 gi|296242430|ref|YP_003649917.1| - 1.6e-05 23.8 0.0 2.3e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|296242430|ref|YP_003649917.1| - 0.00011 21.3 0.0 0.00017 20.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Radical_SAM PF04055.16 gi|296242431|ref|YP_003649918.1| - 6.3e-08 32.9 0.1 3e-07 30.7 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|296242431|ref|YP_003649918.1| - 0.0008 19.2 0.0 0.0021 17.9 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain DUF35_N PF12172.3 gi|296242433|ref|YP_003649920.1| - 6.6e-09 35.4 2.3 9.7e-09 34.8 1.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|296242433|ref|YP_003649920.1| - 2.6e-07 30.7 0.0 3.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain Methyltransf_13 PF08421.6 gi|296242433|ref|YP_003649920.1| - 0.002 17.5 0.6 1.2 8.6 0.0 2.4 2 0 0 2 2 2 2 Putative zinc binding domain FYVE PF01363.16 gi|296242433|ref|YP_003649920.1| - 0.06 13.2 0.1 0.079 12.8 0.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger DZR PF12773.2 gi|296242433|ref|YP_003649920.1| - 0.064 13.0 0.4 0.1 12.4 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L24e PF01246.15 gi|296242433|ref|YP_003649920.1| - 0.13 12.1 0.1 0.24 11.2 0.0 1.6 1 1 0 1 1 1 0 Ribosomal protein L24e zf-ribbon_3 PF13248.1 gi|296242433|ref|YP_003649920.1| - 0.61 9.3 4.5 0.86 8.8 3.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain ACP_syn_III_C PF08541.5 gi|296242434|ref|YP_003649921.1| - 2.6e-10 40.1 0.0 2.1e-09 37.2 0.0 2.3 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|296242434|ref|YP_003649921.1| - 5.6e-05 22.7 0.5 0.00016 21.2 0.2 1.8 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|296242434|ref|YP_003649921.1| - 0.00025 20.6 0.1 0.0039 16.6 0.0 2.0 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ABC_tran PF00005.22 gi|296242435|ref|YP_003649922.1| - 2.5e-28 99.0 0.0 4.2e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|296242435|ref|YP_003649922.1| - 5.4e-18 65.0 0.1 1.1e-17 64.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|296242435|ref|YP_003649922.1| - 1e-06 28.9 0.1 5e-06 26.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|296242435|ref|YP_003649922.1| - 0.03 13.4 0.8 1.9 7.5 0.1 2.3 2 0 0 2 2 2 0 KaiC AAA_29 PF13555.1 gi|296242435|ref|YP_003649922.1| - 0.048 13.1 0.1 0.083 12.4 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|296242435|ref|YP_003649922.1| - 0.078 13.1 0.7 0.2 11.7 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|296242435|ref|YP_003649922.1| - 0.12 12.6 0.2 0.26 11.5 0.2 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|296242436|ref|YP_003649923.1| - 2.8e-29 102.1 0.0 4.1e-29 101.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|296242436|ref|YP_003649923.1| - 1.6e-21 76.3 0.3 2.8e-21 75.6 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|296242436|ref|YP_003649923.1| - 1.2e-09 38.5 0.1 1.3e-07 31.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|296242436|ref|YP_003649923.1| - 7.6e-06 25.3 0.6 0.00017 20.9 0.1 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|296242436|ref|YP_003649923.1| - 0.00026 20.4 0.1 0.012 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|296242436|ref|YP_003649923.1| - 0.0014 18.7 0.3 1.2 9.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain ATP-synt_ab PF00006.20 gi|296242436|ref|YP_003649923.1| - 0.0043 16.5 0.1 0.0085 15.6 0.1 1.6 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|296242436|ref|YP_003649923.1| - 0.01 15.3 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|296242436|ref|YP_003649923.1| - 0.017 14.3 0.0 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|296242436|ref|YP_003649923.1| - 0.033 14.3 0.0 0.075 13.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PRK PF00485.13 gi|296242436|ref|YP_003649923.1| - 0.049 13.1 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family GCD14 PF08704.5 gi|296242436|ref|YP_003649923.1| - 0.05 13.0 0.2 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 tRNA methyltransferase complex GCD14 subunit AAA_16 PF13191.1 gi|296242436|ref|YP_003649923.1| - 0.058 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.16 gi|296242436|ref|YP_003649923.1| - 0.061 12.4 0.0 0.9 8.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|296242436|ref|YP_003649923.1| - 0.072 13.4 0.0 0.27 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|296242436|ref|YP_003649923.1| - 0.082 11.9 0.0 1.3 8.0 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain MIG-14_Wnt-bd PF06664.7 gi|296242436|ref|YP_003649923.1| - 0.11 11.2 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion AAA_10 PF12846.2 gi|296242436|ref|YP_003649923.1| - 0.13 11.6 0.2 1.8 7.9 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain Radical_SAM PF04055.16 gi|296242437|ref|YP_003649924.1| - 5.7e-17 62.3 0.0 1.2e-16 61.2 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily T2SM PF04612.7 gi|296242437|ref|YP_003649924.1| - 0.01 15.6 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M BPD_transp_1 PF00528.17 gi|296242438|ref|YP_003649925.1| - 1.9e-21 76.4 13.0 1.9e-21 76.4 9.0 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component GAS PF13851.1 gi|296242438|ref|YP_003649925.1| - 0.01 15.0 0.4 0.016 14.4 0.3 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF2205 PF10224.4 gi|296242438|ref|YP_003649925.1| - 0.02 14.4 3.6 0.02 14.4 1.1 2.1 2 1 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) DUF972 PF06156.8 gi|296242438|ref|YP_003649925.1| - 0.045 14.1 0.6 0.081 13.2 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF972) XhlA PF10779.4 gi|296242438|ref|YP_003649925.1| - 0.049 13.5 0.5 0.049 13.5 0.4 2.6 3 0 0 3 3 2 0 Haemolysin XhlA TBPIP PF07106.8 gi|296242438|ref|YP_003649925.1| - 0.089 12.3 0.6 0.16 11.5 0.4 1.4 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) IFT57 PF10498.4 gi|296242438|ref|YP_003649925.1| - 0.093 11.4 1.1 0.13 10.9 0.3 1.5 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Spc7 PF08317.6 gi|296242438|ref|YP_003649925.1| - 0.14 10.8 2.3 0.24 10.0 1.6 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DASH_Duo1 PF08651.5 gi|296242438|ref|YP_003649925.1| - 0.25 10.9 2.3 2 8.0 1.0 2.7 2 0 0 2 2 2 0 DASH complex subunit Duo1 Laminin_II PF06009.7 gi|296242438|ref|YP_003649925.1| - 0.27 11.0 3.1 0.51 10.0 2.1 1.3 1 0 0 1 1 1 0 Laminin Domain II DivIC PF04977.10 gi|296242438|ref|YP_003649925.1| - 1.1 8.8 6.6 0.07 12.6 0.4 2.2 2 0 0 2 2 2 0 Septum formation initiator BPD_transp_1 PF00528.17 gi|296242439|ref|YP_003649926.1| - 3.9e-34 117.7 17.2 3.9e-34 117.7 12.0 2.5 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component Doppel PF11466.3 gi|296242439|ref|YP_003649926.1| - 3.3 7.3 5.7 0.52 9.9 0.8 2.1 2 0 0 2 2 2 0 Prion-like protein Doppel SBP_bac_5 PF00496.17 gi|296242440|ref|YP_003649927.1| - 3.8e-19 68.7 9.4 1.3e-16 60.4 0.3 3.1 2 1 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle tRNA-synt_2 PF00152.15 gi|296242442|ref|YP_003649929.1| - 7.9e-84 281.2 0.2 1.1e-83 280.8 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|296242442|ref|YP_003649929.1| - 8.9e-05 22.2 0.4 0.00016 21.4 0.3 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|296242442|ref|YP_003649929.1| - 0.024 13.8 0.1 0.077 12.1 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) PadR PF03551.9 gi|296242443|ref|YP_003649930.1| - 3.3e-05 23.5 0.4 8.1e-05 22.3 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|296242443|ref|YP_003649930.1| - 0.043 14.1 0.0 0.093 13.0 0.0 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain PaaX PF07848.7 gi|296242443|ref|YP_003649930.1| - 0.049 13.6 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein NAD_binding_5 PF07994.7 gi|296242444|ref|YP_003649931.1| - 3.6e-40 138.2 0.0 6.3e-40 137.5 0.0 1.3 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|296242444|ref|YP_003649931.1| - 2.2e-22 79.0 0.0 3.5e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase ADK PF00406.17 gi|296242445|ref|YP_003649932.1| - 1.2e-51 174.5 0.0 1.4e-51 174.3 0.0 1.0 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|296242445|ref|YP_003649932.1| - 1.2e-14 53.6 3.6 2e-14 52.9 2.5 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|296242445|ref|YP_003649932.1| - 3e-11 44.2 0.2 4.3e-11 43.6 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|296242445|ref|YP_003649932.1| - 5.3e-06 26.7 0.1 1e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|296242445|ref|YP_003649932.1| - 6.6e-05 22.8 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|296242445|ref|YP_003649932.1| - 0.087 12.7 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|296242445|ref|YP_003649932.1| - 0.15 11.5 0.0 0.46 9.9 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation SPG48 PF14764.1 gi|296242446|ref|YP_003649933.1| - 0.028 12.9 0.0 0.032 12.7 0.0 1.0 1 0 0 1 1 1 0 AP-5 complex subunit, vesicle trafficking HTH_24 PF13412.1 gi|296242447|ref|YP_003649934.1| - 5.4e-07 28.9 4.1 5.4e-07 28.9 2.9 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|296242447|ref|YP_003649934.1| - 0.0014 18.1 2.6 0.0019 17.7 0.9 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|296242447|ref|YP_003649934.1| - 0.032 14.2 0.1 0.1 12.6 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|296242447|ref|YP_003649934.1| - 0.067 12.9 1.1 0.16 11.7 0.8 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.1 gi|296242447|ref|YP_003649934.1| - 0.068 13.4 0.3 1.3 9.3 0.0 2.4 2 1 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|296242447|ref|YP_003649934.1| - 0.11 12.2 1.4 0.19 11.4 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Aldo_ket_red PF00248.16 gi|296242448|ref|YP_003649935.1| - 7.3e-58 195.6 0.2 8.8e-58 195.3 0.1 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF4562 PF15123.1 gi|296242448|ref|YP_003649935.1| - 0.0018 18.1 0.0 0.62 9.9 0.0 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4562) ThiS PF02597.15 gi|296242449|ref|YP_003649936.1| - 2.8e-12 46.8 0.0 3.2e-12 46.6 0.0 1.0 1 0 0 1 1 1 1 ThiS family E2_bind PF08825.5 gi|296242449|ref|YP_003649936.1| - 0.0061 16.2 0.1 0.0087 15.7 0.0 1.3 1 0 0 1 1 1 1 E2 binding domain Acetyltransf_CG PF14542.1 gi|296242450|ref|YP_003649937.1| - 4.7e-23 80.8 0.0 8.3e-23 80.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_1 PF00583.19 gi|296242450|ref|YP_003649937.1| - 1.7e-06 27.9 0.0 3e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|296242450|ref|YP_003649937.1| - 2.2e-05 24.5 0.0 4.2e-05 23.6 0.0 1.5 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|296242450|ref|YP_003649937.1| - 0.00053 20.0 0.0 0.00074 19.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|296242450|ref|YP_003649937.1| - 0.051 13.4 0.1 0.2 11.5 0.0 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Gemin6 PF06372.7 gi|296242451|ref|YP_003649938.1| - 0.077 12.3 0.2 0.15 11.3 0.1 1.5 1 1 0 1 1 1 0 Gemin6 protein DNA_primase_lrg PF04104.9 gi|296242452|ref|YP_003649939.1| - 2.5e-34 118.7 0.0 3.4e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF3110 PF11360.3 gi|296242453|ref|YP_003649940.1| - 0.012 15.3 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3110) MarR_2 PF12802.2 gi|296242454|ref|YP_003649941.1| - 8.4e-09 34.9 0.0 1.8e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|296242454|ref|YP_003649941.1| - 5.2e-07 29.3 0.0 8.8e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|296242454|ref|YP_003649941.1| - 1.2e-06 27.8 0.1 2.2e-06 26.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|296242454|ref|YP_003649941.1| - 6.2e-06 25.7 0.0 1.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|296242454|ref|YP_003649941.1| - 1.1e-05 25.5 0.0 2.1e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|296242454|ref|YP_003649941.1| - 7.1e-05 22.5 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|296242454|ref|YP_003649941.1| - 0.00026 20.6 0.1 0.00079 19.0 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|296242454|ref|YP_003649941.1| - 0.00047 19.8 0.3 0.0011 18.6 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|296242454|ref|YP_003649941.1| - 0.00089 18.8 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|296242454|ref|YP_003649941.1| - 0.0015 18.5 0.0 0.0027 17.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|296242454|ref|YP_003649941.1| - 0.0077 16.1 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|296242454|ref|YP_003649941.1| - 0.031 13.9 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.1 gi|296242454|ref|YP_003649941.1| - 0.052 13.6 0.0 0.2 11.7 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Wzy_C PF04932.10 gi|296242454|ref|YP_003649941.1| - 0.088 12.5 2.9 0.28 10.9 0.1 2.2 2 0 0 2 2 2 0 O-Antigen ligase S10_plectin PF03501.10 gi|296242454|ref|YP_003649941.1| - 0.091 12.6 0.0 0.34 10.8 0.0 1.8 2 0 0 2 2 2 0 Plectin/S10 domain DUF2115 PF09888.4 gi|296242455|ref|YP_003649942.1| - 0.021 14.9 1.0 0.034 14.2 0.7 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) Carb_kinase PF01256.12 gi|296242457|ref|YP_003649944.1| - 1.4e-49 168.5 0.5 1.9e-49 168.1 0.3 1.1 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|296242457|ref|YP_003649944.1| - 7e-42 142.8 0.1 2.1e-41 141.3 0.0 1.9 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|296242457|ref|YP_003649944.1| - 7e-06 25.3 0.0 1.4e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family CxxCxxCC PF03692.10 gi|296242458|ref|YP_003649945.1| - 1.1e-10 41.8 0.1 1.6e-10 41.2 0.1 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3344 PF11824.3 gi|296242459|ref|YP_003649946.1| - 0.001 18.5 0.1 0.0022 17.3 0.1 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3344) tRNA_deacylase PF04414.7 gi|296242460|ref|YP_003649947.1| - 1e-64 217.5 0.2 1.2e-64 217.3 0.1 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase TYW3 PF02676.9 gi|296242461|ref|YP_003649948.1| - 1.3e-37 128.9 0.0 1.6e-37 128.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase TYW3 ThiI PF02568.9 gi|296242462|ref|YP_003649949.1| - 2e-37 128.5 0.0 2.9e-37 128.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|296242462|ref|YP_003649949.1| - 5.5e-12 45.7 0.3 2.7e-10 40.2 0.4 2.5 1 1 1 2 2 2 1 THUMP domain QueC PF06508.8 gi|296242462|ref|YP_003649949.1| - 0.00015 21.1 0.1 0.021 14.1 0.1 2.6 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|296242462|ref|YP_003649949.1| - 0.015 13.8 0.0 0.024 13.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|296242462|ref|YP_003649949.1| - 0.019 14.4 0.0 0.04 13.4 0.0 1.5 1 0 0 1 1 1 0 PP-loop family ATP_bind_4 PF01902.12 gi|296242462|ref|YP_003649949.1| - 0.044 13.1 0.0 0.077 12.3 0.0 1.4 1 0 0 1 1 1 0 ATP-binding region AAA_14 PF13173.1 gi|296242462|ref|YP_003649949.1| - 0.06 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Sucrose_synth PF00862.14 gi|296242462|ref|YP_003649949.1| - 0.11 10.4 0.0 0.19 9.6 0.0 1.4 1 0 0 1 1 1 0 Sucrose synthase tRNA_bind PF01588.15 gi|296242463|ref|YP_003649950.1| - 3.5e-22 78.0 0.0 3.9e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Succ_CoA_lig PF13607.1 gi|296242464|ref|YP_003649951.1| - 1.4e-53 180.2 0.7 3.9e-53 178.7 0.1 2.0 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|296242464|ref|YP_003649951.1| - 2e-26 92.4 0.5 1.3e-25 89.8 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|296242464|ref|YP_003649951.1| - 2.4e-21 76.0 1.4 6.3e-21 74.7 0.4 2.2 2 0 0 2 2 2 1 CoA binding domain F420_oxidored PF03807.12 gi|296242464|ref|YP_003649951.1| - 0.0083 16.5 0.9 1 9.8 0.3 3.4 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|296242464|ref|YP_003649951.1| - 0.05 14.1 0.1 0.18 12.3 0.0 2.0 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|296242464|ref|YP_003649951.1| - 0.056 13.1 0.1 0.18 11.4 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF4330 PF14221.1 gi|296242464|ref|YP_003649951.1| - 0.072 12.9 0.2 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Ribosomal_L21e PF01157.13 gi|296242465|ref|YP_003649952.1| - 0.12 12.2 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L21e NTP_transf_2 PF01909.18 gi|296242466|ref|YP_003649953.1| - 0.013 15.8 0.3 0.33 11.3 0.0 2.7 3 0 0 3 3 3 0 Nucleotidyltransferase domain HAD_2 PF13419.1 gi|296242467|ref|YP_003649954.1| - 0.00036 20.8 0.2 0.00046 20.4 0.1 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase QRPTase_C PF01729.14 gi|296242468|ref|YP_003649955.1| - 7.4e-24 84.1 0.0 1.1e-23 83.6 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|296242468|ref|YP_003649955.1| - 7.8e-05 22.4 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain UPF0047 PF01894.12 gi|296242469|ref|YP_003649956.1| - 4e-33 113.7 0.0 4.7e-33 113.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HSP20 PF00011.16 gi|296242470|ref|YP_003649957.1| - 3.7e-10 39.5 2.1 8.4e-09 35.2 1.5 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|296242470|ref|YP_003649957.1| - 3.7e-05 24.1 0.5 5.8e-05 23.5 0.4 1.2 1 0 0 1 1 1 1 CS domain GvpH PF05455.6 gi|296242470|ref|YP_003649957.1| - 6.1e-05 22.7 0.0 7.5e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 GvpH MRP-S32 PF10210.4 gi|296242470|ref|YP_003649957.1| - 0.053 13.8 0.1 0.09 13.1 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial 28S ribosomal protein S32 DUF2807 PF10988.3 gi|296242470|ref|YP_003649957.1| - 1.5 8.3 4.7 6.6 6.2 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2807) Metallophos_2 PF12850.2 gi|296242471|ref|YP_003649958.1| - 4.9e-31 107.6 0.1 5.9e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|296242471|ref|YP_003649958.1| - 2.4e-11 43.4 0.3 7e-11 41.8 0.2 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase PNP_UDP_1 PF01048.15 gi|296242472|ref|YP_003649959.1| - 6.7e-39 133.2 0.2 8.3e-39 132.9 0.2 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily PfkB PF00294.19 gi|296242473|ref|YP_003649960.1| - 3.9e-50 170.6 0.0 5.1e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase RE_HindVP PF09519.5 gi|296242474|ref|YP_003649961.1| - 0.092 11.6 0.0 0.14 11.0 0.0 1.4 1 0 0 1 1 1 0 HindVP restriction endonuclease Microcin PF03526.8 gi|296242476|ref|YP_003649963.1| - 0.057 13.0 0.0 0.17 11.5 0.0 1.7 1 0 0 1 1 1 0 Colicin E1 (microcin) immunity protein FAST_1 PF06743.10 gi|296242476|ref|YP_003649963.1| - 0.082 12.6 0.8 0.23 11.1 0.0 2.2 3 0 0 3 3 3 0 FAST kinase-like protein, subdomain 1 Halogen_Hydrol PF10112.4 gi|296242477|ref|YP_003649964.1| - 0.0027 17.1 0.3 0.0043 16.4 0.1 1.5 1 1 0 1 1 1 1 5-bromo-4-chloroindolyl phosphate hydrolysis protein Exosortase_EpsH PF09721.5 gi|296242478|ref|YP_003649965.1| - 3.2e-08 33.0 25.2 7.9e-08 31.8 17.5 1.7 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) AAA_3 PF07726.6 gi|296242479|ref|YP_003649966.1| - 7e-43 145.3 0.0 1.1e-42 144.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|296242479|ref|YP_003649966.1| - 5.8e-13 48.7 0.0 1.1e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|296242479|ref|YP_003649966.1| - 2.1e-09 37.6 0.0 4.3e-09 36.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|296242479|ref|YP_003649966.1| - 3e-09 36.3 0.2 1.4e-08 34.0 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|296242479|ref|YP_003649966.1| - 4.4e-06 26.2 0.1 3.8e-05 23.2 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|296242479|ref|YP_003649966.1| - 2.3e-05 25.1 0.0 7.3e-05 23.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|296242479|ref|YP_003649966.1| - 4.5e-05 22.7 0.2 0.0073 15.4 0.0 2.5 2 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|296242479|ref|YP_003649966.1| - 0.00013 20.9 0.0 0.013 14.3 0.0 2.5 3 0 0 3 3 3 1 MCM2/3/5 family AAA_22 PF13401.1 gi|296242479|ref|YP_003649966.1| - 0.00014 22.0 0.2 0.0039 17.3 0.1 2.7 2 1 1 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|296242479|ref|YP_003649966.1| - 0.0003 20.4 0.3 0.0013 18.4 0.1 2.0 2 0 0 2 2 2 1 Part of AAA domain RNA_helicase PF00910.17 gi|296242479|ref|YP_003649966.1| - 0.00039 20.5 0.0 0.0015 18.6 0.0 1.9 2 0 0 2 2 2 1 RNA helicase AAA_16 PF13191.1 gi|296242479|ref|YP_003649966.1| - 0.00055 19.9 0.1 0.004 17.1 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|296242479|ref|YP_003649966.1| - 0.0011 19.2 0.0 0.003 17.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain DUF2075 PF09848.4 gi|296242479|ref|YP_003649966.1| - 0.0089 15.0 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.1 gi|296242479|ref|YP_003649966.1| - 0.016 15.2 0.0 0.04 13.9 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|296242479|ref|YP_003649966.1| - 0.018 14.5 0.1 0.11 12.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|296242479|ref|YP_003649966.1| - 0.027 14.3 0.0 0.099 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|296242479|ref|YP_003649966.1| - 0.039 13.3 0.0 0.094 12.1 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein TIP49 PF06068.8 gi|296242479|ref|YP_003649966.1| - 0.041 12.5 0.0 0.064 11.9 0.0 1.4 1 0 0 1 1 1 0 TIP49 C-terminus NACHT PF05729.7 gi|296242479|ref|YP_003649966.1| - 0.064 12.9 0.2 0.18 11.4 0.1 1.7 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.11 gi|296242479|ref|YP_003649966.1| - 0.079 12.1 0.3 0.25 10.5 0.1 1.8 1 1 0 1 1 1 0 PhoH-like protein AAA_25 PF13481.1 gi|296242479|ref|YP_003649966.1| - 0.082 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.9 gi|296242479|ref|YP_003649966.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|296242479|ref|YP_003649966.1| - 0.13 12.1 0.1 0.77 9.6 0.0 2.3 2 1 0 2 2 2 0 AAA domain Apq12 PF12716.2 gi|296242482|ref|YP_003649969.1| - 6.2 6.5 9.8 5.4 6.7 1.9 2.9 2 1 1 3 3 3 0 Nuclear pore assembly and biogenesis MIT PF04212.13 gi|296242483|ref|YP_003649970.1| - 0.13 12.1 2.2 6.9 6.6 0.0 2.4 2 0 0 2 2 2 0 MIT (microtubule interacting and transport) domain EF-hand_1 PF00036.27 gi|296242484|ref|YP_003649971.1| - 0.12 11.7 0.4 0.45 9.9 0.1 2.2 2 0 0 2 2 2 0 EF hand DUF58 PF01882.13 gi|296242485|ref|YP_003649972.1| - 1.9e-09 37.5 0.0 4.1e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF1616 PF07760.6 gi|296242486|ref|YP_003649973.1| - 5.6e-13 48.6 0.0 6.5e-13 48.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF1616 PF07760.6 gi|296242487|ref|YP_003649974.1| - 8.8e-30 103.8 15.8 1.2e-29 103.3 10.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) Tic20 PF09685.5 gi|296242487|ref|YP_003649974.1| - 0.16 11.9 7.6 1.4 8.9 0.4 2.2 2 0 0 2 2 2 0 Tic20-like protein YibE_F PF07907.6 gi|296242487|ref|YP_003649974.1| - 1.8 7.6 8.5 1.7 7.7 0.5 2.0 2 0 0 2 2 2 0 YibE/F-like protein IncA PF04156.9 gi|296242488|ref|YP_003649975.1| - 0.0006 19.4 0.0 0.00075 19.1 0.0 1.1 1 0 0 1 1 1 1 IncA protein Reticulon PF02453.12 gi|296242488|ref|YP_003649975.1| - 0.0037 16.8 0.1 0.0044 16.6 0.1 1.0 1 0 0 1 1 1 1 Reticulon DUF2254 PF10011.4 gi|296242488|ref|YP_003649975.1| - 0.022 13.2 0.0 0.026 12.9 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) PIG-P PF08510.7 gi|296242488|ref|YP_003649975.1| - 0.033 13.8 1.1 0.76 9.4 0.0 2.0 1 1 1 2 2 2 0 PIG-P DUF2207 PF09972.4 gi|296242488|ref|YP_003649975.1| - 0.041 12.4 0.1 0.048 12.2 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF4131 PF13567.1 gi|296242488|ref|YP_003649975.1| - 0.043 13.2 0.0 0.05 13.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) G6B PF15096.1 gi|296242488|ref|YP_003649975.1| - 0.052 13.0 0.0 0.064 12.7 0.0 1.0 1 0 0 1 1 1 0 G6B family ATG22 PF11700.3 gi|296242488|ref|YP_003649975.1| - 2 6.8 6.1 2.4 6.5 4.3 1.1 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like MHYT PF03707.11 gi|296242488|ref|YP_003649975.1| - 3.8 7.7 9.3 5.8 7.1 1.1 2.1 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat DUF4191 PF13829.1 gi|296242488|ref|YP_003649975.1| - 4.7 6.2 10.2 0.53 9.3 4.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) OAD_gamma PF04277.8 gi|296242488|ref|YP_003649975.1| - 7.6 6.9 7.6 0.59 10.5 1.1 2.1 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Hemerythrin PF01814.18 gi|296242489|ref|YP_003649976.1| - 4e-05 23.8 0.4 4e-05 23.8 0.3 1.8 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain ApoB100_C PF12491.3 gi|296242489|ref|YP_003649976.1| - 0.012 15.2 0.9 0.028 14.0 0.6 1.6 1 0 0 1 1 1 0 Apolipoprotein B100 C terminal Lysozyme_like PF13702.1 gi|296242489|ref|YP_003649976.1| - 0.043 13.2 0.1 0.084 12.3 0.0 1.4 1 0 0 1 1 1 0 Lysozyme-like Lumazine_bd_2 PF12893.2 gi|296242490|ref|YP_003649977.1| - 0.034 14.6 0.0 2.7 8.5 0.0 2.2 1 1 1 2 2 2 0 Putative lumazine-binding Peptidase_S24 PF00717.18 gi|296242492|ref|YP_003649979.1| - 8.6e-05 22.1 0.1 0.00025 20.6 0.0 1.8 2 0 0 2 2 2 1 Peptidase S24-like Peptidase_S26 PF10502.4 gi|296242493|ref|YP_003649980.1| - 0.065 12.7 0.0 0.092 12.2 0.0 1.2 1 0 0 1 1 1 0 Signal peptidase, peptidase S26 AA_permease_2 PF13520.1 gi|296242494|ref|YP_003649981.1| - 1.2e-18 66.9 46.8 1.6e-18 66.5 32.4 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|296242494|ref|YP_003649981.1| - 2.2e-07 29.6 44.7 2.2e-07 29.6 31.0 1.9 1 1 1 2 2 2 1 Amino acid permease HTH_20 PF12840.2 gi|296242495|ref|YP_003649982.1| - 0.0014 18.4 0.0 0.45 10.3 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|296242495|ref|YP_003649982.1| - 0.004 16.8 0.0 0.012 15.3 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|296242495|ref|YP_003649982.1| - 0.0073 15.9 0.0 0.02 14.6 0.0 1.8 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|296242495|ref|YP_003649982.1| - 0.066 13.1 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|296242495|ref|YP_003649982.1| - 0.1 11.9 0.0 0.44 9.9 0.0 2.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|296242495|ref|YP_003649982.1| - 0.11 12.1 0.1 0.43 10.2 0.0 1.9 2 0 0 2 2 2 0 MarR family Arch_flagellin PF01917.11 gi|296242497|ref|YP_003649984.1| - 2.2e-25 89.3 1.1 2.9e-25 89.0 0.7 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin DUF948 PF06103.6 gi|296242497|ref|YP_003649984.1| - 0.14 12.0 1.0 0.23 11.3 0.7 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Nudix_N_2 PF14803.1 gi|296242498|ref|YP_003649985.1| - 0.0039 16.8 0.5 0.45 10.2 0.0 2.2 2 0 0 2 2 2 1 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|296242498|ref|YP_003649985.1| - 0.0094 15.1 0.3 1 8.6 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|296242498|ref|YP_003649985.1| - 0.01 15.6 1.9 0.014 15.1 1.4 1.3 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Ogr_Delta PF04606.7 gi|296242498|ref|YP_003649985.1| - 0.03 13.9 0.8 0.041 13.5 0.5 1.2 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger HypA PF01155.14 gi|296242498|ref|YP_003649985.1| - 0.037 13.7 0.1 0.048 13.3 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family GCC2_GCC3 PF07699.8 gi|296242498|ref|YP_003649985.1| - 0.12 11.9 3.6 0.27 10.8 0.6 2.1 2 0 0 2 2 2 0 GCC2 and GCC3 Zn-ribbon_8 PF09723.5 gi|296242498|ref|YP_003649985.1| - 0.12 12.3 3.5 0.47 10.4 1.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DUF866 PF05907.8 gi|296242498|ref|YP_003649985.1| - 0.13 11.7 0.8 0.43 10.0 0.6 1.7 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) TFIIS_C PF01096.13 gi|296242498|ref|YP_003649985.1| - 0.14 11.8 7.4 1.2 8.8 0.8 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L37e PF01907.14 gi|296242498|ref|YP_003649985.1| - 0.17 11.6 6.6 0.15 11.8 0.9 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e DZR PF12773.2 gi|296242498|ref|YP_003649985.1| - 0.18 11.6 1.9 0.57 10.0 1.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|296242498|ref|YP_003649985.1| - 0.26 10.6 2.7 0.93 8.8 1.8 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.9 gi|296242498|ref|YP_003649985.1| - 0.35 10.5 2.7 20 4.9 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_5 PF13719.1 gi|296242498|ref|YP_003649985.1| - 0.38 10.3 0.1 0.38 10.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|296242498|ref|YP_003649985.1| - 0.5 10.2 3.0 1.2 9.0 2.1 1.6 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|296242498|ref|YP_003649985.1| - 0.66 9.7 0.2 0.66 9.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|296242498|ref|YP_003649985.1| - 2.5 7.7 6.2 5.6 6.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|296242498|ref|YP_003649985.1| - 3 8.1 5.6 89 3.4 3.8 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain RRN7 PF11781.3 gi|296242498|ref|YP_003649985.1| - 3 7.4 5.9 19 4.8 1.4 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 tRNA-Thr_ED PF08915.6 gi|296242499|ref|YP_003649986.1| - 7.4e-48 162.0 0.0 1.7e-47 160.8 0.0 1.6 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|296242499|ref|YP_003649986.1| - 4.6e-27 93.7 1.2 1e-26 92.7 0.8 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|296242499|ref|YP_003649986.1| - 4.5e-14 52.3 0.7 1.3e-13 50.9 0.6 1.6 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Rad51 PF08423.6 gi|296242500|ref|YP_003649987.1| - 7.1e-97 323.3 0.1 1.4e-96 322.3 0.0 1.5 2 0 0 2 2 2 1 Rad51 RecA PF00154.16 gi|296242500|ref|YP_003649987.1| - 8.2e-17 61.2 0.0 1e-16 60.9 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|296242500|ref|YP_003649987.1| - 2.1e-15 56.6 0.0 1.1e-14 54.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|296242500|ref|YP_003649987.1| - 8.3e-10 38.1 0.0 1.5e-09 37.3 0.0 1.4 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|296242500|ref|YP_003649987.1| - 2.7e-08 33.8 0.8 1e-07 32.0 0.1 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|296242500|ref|YP_003649987.1| - 0.008 16.1 0.0 0.045 13.8 0.0 2.3 2 0 0 2 2 2 1 IMS family HHH motif AAA_24 PF13479.1 gi|296242500|ref|YP_003649987.1| - 0.0085 15.6 0.0 0.037 13.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain HTH_3 PF01381.17 gi|296242500|ref|YP_003649987.1| - 0.021 14.6 0.0 0.35 10.7 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix HTH_10 PF04967.7 gi|296242500|ref|YP_003649987.1| - 0.034 13.7 0.0 0.23 11.0 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Arch_ATPase PF01637.13 gi|296242500|ref|YP_003649987.1| - 0.044 13.4 0.1 4.7 6.8 0.0 2.3 1 1 1 2 2 2 0 Archaeal ATPase AAA_22 PF13401.1 gi|296242500|ref|YP_003649987.1| - 0.046 13.8 0.0 0.099 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Sigma70_r3 PF04539.11 gi|296242500|ref|YP_003649987.1| - 0.064 13.1 0.0 0.39 10.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 AAA_18 PF13238.1 gi|296242500|ref|YP_003649987.1| - 0.08 13.2 0.0 0.16 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Arc_PepC_II PF06847.6 gi|296242502|ref|YP_003649989.1| - 7.9e-12 45.4 0.0 1.6e-11 44.4 0.0 1.5 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|296242502|ref|YP_003649989.1| - 6.9e-07 29.3 5.2 6.9e-07 29.3 3.6 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family HIT PF01230.18 gi|296242503|ref|YP_003649990.1| - 8.5e-11 42.2 0.0 1.3e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|296242503|ref|YP_003649990.1| - 2.9e-07 30.1 0.1 4.8e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DpnD-PcfM PF14207.1 gi|296242504|ref|YP_003649991.1| - 0.0072 16.0 0.3 0.016 14.9 0.2 1.6 1 0 0 1 1 1 1 DpnD/PcfM-like protein SNF2_N PF00176.18 gi|296242505|ref|YP_003649992.1| - 6e-19 67.9 0.0 1.2e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|296242505|ref|YP_003649992.1| - 1e-13 50.9 0.1 2.2e-13 49.8 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF3883 PF13020.1 gi|296242505|ref|YP_003649992.1| - 2.4e-10 39.9 0.1 4.9e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ResIII PF04851.10 gi|296242505|ref|YP_003649992.1| - 9.3e-09 35.3 0.0 1.7e-07 31.2 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|296242505|ref|YP_003649992.1| - 3.1e-06 26.8 0.0 6.9e-06 25.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|296242505|ref|YP_003649992.1| - 0.12 12.5 0.5 7.9 6.6 0.0 3.9 3 1 1 4 4 4 0 AAA domain DUF499 PF04465.7 gi|296242507|ref|YP_003649994.1| - 1.7e-61 208.0 4.5 2.7e-61 207.4 3.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF499) DUF1156 PF06634.7 gi|296242508|ref|YP_003649995.1| - 8.2e-18 63.9 0.0 2e-17 62.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|296242508|ref|YP_003649995.1| - 3e-08 33.6 1.1 1.2e-06 28.4 0.8 2.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|296242508|ref|YP_003649995.1| - 5.8e-08 32.3 0.0 0.0029 17.0 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|296242508|ref|YP_003649995.1| - 1.3e-05 24.8 0.0 0.16 11.5 0.0 2.6 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 zinc_ribbon_2 PF13240.1 gi|296242508|ref|YP_003649995.1| - 0.068 12.6 0.3 7.4 6.1 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain NMD3 PF04981.8 gi|296242508|ref|YP_003649995.1| - 0.17 11.0 0.0 0.29 10.2 0.0 1.3 1 0 0 1 1 1 0 NMD3 family zf-ribbon_3 PF13248.1 gi|296242508|ref|YP_003649995.1| - 0.26 10.5 1.7 1.8 7.8 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Resolvase PF00239.16 gi|296242510|ref|YP_003649997.1| - 9e-21 74.2 0.3 1.6e-20 73.3 0.2 1.5 1 1 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.2 gi|296242510|ref|YP_003649997.1| - 6.6e-08 32.6 0.4 1.4e-07 31.6 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.1 gi|296242510|ref|YP_003649997.1| - 2.7e-05 23.8 0.2 5.9e-05 22.7 0.1 1.6 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.18 gi|296242510|ref|YP_003649997.1| - 0.00037 19.9 1.5 0.00045 19.7 0.1 1.9 2 0 0 2 2 2 1 MerR family regulatory protein MerR_2 PF13591.1 gi|296242510|ref|YP_003649997.1| - 0.013 15.0 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_28 PF13518.1 gi|296242510|ref|YP_003649997.1| - 0.017 15.0 0.3 0.038 14.0 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|296242510|ref|YP_003649997.1| - 0.032 13.8 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_Tnp_1 PF01527.15 gi|296242510|ref|YP_003649997.1| - 0.044 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Transposase OrfB_Zn_ribbon PF07282.6 gi|296242511|ref|YP_003649998.1| - 1.4e-20 72.6 0.1 2.8e-20 71.7 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1356 PF07092.7 gi|296242511|ref|YP_003649998.1| - 0.012 14.8 0.3 0.021 14.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1356) Ax_dynein_light PF10211.4 gi|296242511|ref|YP_003649998.1| - 0.014 15.2 0.8 0.069 12.9 0.2 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain Met_asp_mut_E PF06368.6 gi|296242511|ref|YP_003649998.1| - 0.017 13.3 0.0 0.031 12.4 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) zf-ribbon_3 PF13248.1 gi|296242511|ref|YP_003649998.1| - 0.058 12.6 2.3 0.13 11.4 1.6 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|296242511|ref|YP_003649998.1| - 0.095 12.5 0.7 0.19 11.5 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|296242511|ref|YP_003649998.1| - 0.1 12.3 1.2 0.42 10.3 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Vps39_2 PF10367.4 gi|296242511|ref|YP_003649998.1| - 0.14 12.3 0.8 0.76 9.9 0.6 2.3 1 1 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 zf-Mss51 PF13824.1 gi|296242511|ref|YP_003649998.1| - 0.17 11.7 1.7 0.33 10.8 1.2 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RING_3 PF14369.1 gi|296242511|ref|YP_003649998.1| - 0.87 9.6 5.0 1 9.4 0.3 2.4 1 1 1 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|296242511|ref|YP_003649998.1| - 1.2 9.1 6.8 2.7 8.0 0.2 3.2 2 1 1 3 3 3 0 Zinc ribbon domain YhfH PF14149.1 gi|296242512|ref|YP_003649999.1| - 0.0075 16.0 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 YhfH-like protein HNH PF01844.18 gi|296242512|ref|YP_003649999.1| - 0.066 13.0 2.0 0.41 10.5 1.4 2.1 1 1 0 1 1 1 0 HNH endonuclease DUF968 PF06147.6 gi|296242512|ref|YP_003649999.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF968) Synaptonemal_3 PF15191.1 gi|296242512|ref|YP_003649999.1| - 0.13 12.0 0.2 8.3 6.2 0.0 2.5 3 0 0 3 3 3 0 Synaptonemal complex central element protein 3 HK PF02110.10 gi|296242513|ref|YP_003650000.1| - 5e-83 278.0 0.2 5.6e-83 277.8 0.1 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|296242513|ref|YP_003650000.1| - 4.7e-07 29.2 0.1 6.5e-07 28.7 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase MgtC PF02308.11 gi|296242513|ref|YP_003650000.1| - 0.054 13.3 0.1 0.4 10.5 0.0 2.1 2 0 0 2 2 2 0 MgtC family TMP_2 PF06791.8 gi|296242513|ref|YP_003650000.1| - 0.091 12.3 0.2 0.18 11.4 0.2 1.4 1 0 0 1 1 1 0 Prophage tail length tape measure protein NikR_C PF08753.6 gi|296242513|ref|YP_003650000.1| - 0.13 12.1 0.0 0.4 10.6 0.0 1.8 2 0 0 2 2 2 0 NikR C terminal nickel binding domain TMP-TENI PF02581.12 gi|296242514|ref|YP_003650001.1| - 7.5e-60 201.1 0.1 9.6e-60 200.7 0.1 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI NMO PF03060.10 gi|296242514|ref|YP_003650001.1| - 0.00024 20.3 2.4 0.00057 19.1 1.7 1.6 1 1 0 1 1 1 1 Nitronate monooxygenase NanE PF04131.9 gi|296242514|ref|YP_003650001.1| - 0.00043 19.3 0.1 0.00073 18.5 0.0 1.4 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|296242514|ref|YP_003650001.1| - 0.002 17.2 3.6 0.0022 17.1 2.3 1.4 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG QRPTase_C PF01729.14 gi|296242514|ref|YP_003650001.1| - 0.0031 17.0 0.1 0.019 14.4 0.0 2.2 2 1 1 3 3 3 1 Quinolinate phosphoribosyl transferase, C-terminal domain DUF561 PF04481.7 gi|296242514|ref|YP_003650001.1| - 0.0037 16.2 1.9 0.059 12.3 0.9 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF561) His_biosynth PF00977.16 gi|296242514|ref|YP_003650001.1| - 0.056 12.6 0.9 0.15 11.3 0.6 1.8 1 1 0 1 1 1 0 Histidine biosynthesis protein FlpD PF02662.11 gi|296242514|ref|YP_003650001.1| - 0.088 12.5 0.2 0.21 11.2 0.1 1.8 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Phos_pyr_kin PF08543.7 gi|296242515|ref|YP_003650002.1| - 1.1e-91 306.4 0.9 1.3e-91 306.2 0.6 1.0 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|296242515|ref|YP_003650002.1| - 2.4e-10 40.0 0.4 3.8e-10 39.3 0.3 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|296242515|ref|YP_003650002.1| - 0.092 12.0 1.2 0.14 11.4 0.8 1.4 1 1 0 1 1 1 0 Carbohydrate kinase End_beta_barrel PF12195.3 gi|296242515|ref|YP_003650002.1| - 0.18 11.5 1.3 0.49 10.1 0.9 1.7 1 0 0 1 1 1 0 Beta barrel domain of bacteriophage endosialidase Pribosyltran PF00156.22 gi|296242517|ref|YP_003650004.1| - 2.2e-22 79.1 0.3 2.8e-22 78.7 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|296242517|ref|YP_003650004.1| - 0.0021 17.2 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase GMP_synt_C PF00958.17 gi|296242518|ref|YP_003650005.1| - 3.5e-29 100.3 0.1 8.2e-29 99.1 0.1 1.7 1 0 0 1 1 1 1 GMP synthase C terminal domain GATase PF00117.23 gi|296242518|ref|YP_003650005.1| - 4e-29 101.4 0.0 6.5e-29 100.7 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|296242518|ref|YP_003650005.1| - 3.5e-10 39.7 0.1 9e-10 38.3 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 NAD_synthase PF02540.12 gi|296242518|ref|YP_003650005.1| - 1.3e-08 34.0 0.0 0.00039 19.3 0.0 2.3 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.15 gi|296242518|ref|YP_003650005.1| - 0.0011 18.5 0.0 0.0025 17.3 0.0 1.6 2 0 0 2 2 2 1 PP-loop family Asn_synthase PF00733.16 gi|296242518|ref|YP_003650005.1| - 0.0031 17.0 0.0 0.0055 16.2 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|296242518|ref|YP_003650005.1| - 0.012 15.0 0.0 0.041 13.3 0.0 1.8 2 0 0 2 2 2 0 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|296242518|ref|YP_003650005.1| - 0.013 14.0 0.2 0.084 11.4 0.1 1.9 2 0 0 2 2 2 0 tRNA methyl transferase Arginosuc_synth PF00764.14 gi|296242518|ref|YP_003650005.1| - 0.021 13.8 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Arginosuccinate synthase QueC PF06508.8 gi|296242518|ref|YP_003650005.1| - 0.039 13.2 0.0 0.21 10.8 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC DJ-1_PfpI PF01965.19 gi|296242518|ref|YP_003650005.1| - 0.058 12.8 0.0 0.16 11.3 0.0 1.7 1 0 0 1 1 1 0 DJ-1/PfpI family Radical_SAM PF04055.16 gi|296242519|ref|YP_003650006.1| - 3.2e-08 33.9 0.0 7.1e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Radical_SAM PF04055.16 gi|296242520|ref|YP_003650007.1| - 1.8e-12 47.7 0.0 3.4e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily BPL_LplA_LipB PF03099.14 gi|296242521|ref|YP_003650008.1| - 2.5e-23 82.4 0.0 3.8e-23 81.8 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.4 gi|296242522|ref|YP_003650009.1| - 0.0018 17.8 0.0 0.0023 17.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus TP6A_N PF04406.9 gi|296242524|ref|YP_003650011.1| - 6.8e-24 83.3 0.3 1.1e-23 82.6 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|296242524|ref|YP_003650011.1| - 0.021 14.6 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.6 gi|296242525|ref|YP_003650012.1| - 2.4e-61 205.9 0.0 4.5e-61 205.0 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|296242525|ref|YP_003650012.1| - 3.9e-14 52.3 0.0 1.4e-13 50.5 0.0 1.9 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|296242525|ref|YP_003650012.1| - 7.4e-12 45.0 0.0 1.3e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|296242525|ref|YP_003650012.1| - 4.1e-07 28.9 0.0 9.3e-07 27.7 0.0 1.5 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.9 gi|296242525|ref|YP_003650012.1| - 0.0031 17.2 0.0 0.0096 15.6 0.0 1.8 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Ribosomal_S13 PF00416.17 gi|296242525|ref|YP_003650012.1| - 0.013 15.9 0.0 0.059 13.8 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein S13/S18 DUF4401 PF14351.1 gi|296242526|ref|YP_003650013.1| - 0.049 12.6 1.9 0.056 12.4 1.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) CbtA PF09490.5 gi|296242526|ref|YP_003650013.1| - 0.11 11.7 0.9 0.12 11.6 0.6 1.0 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) DUF417 PF04224.7 gi|296242526|ref|YP_003650013.1| - 0.4 10.0 2.9 0.46 9.8 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 CstA PF02554.9 gi|296242527|ref|YP_003650014.1| - 3.9e-118 394.3 28.2 3.9e-118 394.3 19.6 2.2 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|296242527|ref|YP_003650014.1| - 2.9e-24 85.8 9.2 2.9e-24 85.8 6.4 3.9 3 1 0 3 3 3 1 C-terminal domain on CstA (DUF4161) ArsA_ATPase PF02374.10 gi|296242529|ref|YP_003650016.1| - 5.4e-47 160.3 0.0 6.5e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|296242529|ref|YP_003650016.1| - 6.1e-14 51.8 0.1 1.4e-12 47.4 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|296242529|ref|YP_003650016.1| - 9.6e-07 28.8 0.1 5e-06 26.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|296242529|ref|YP_003650016.1| - 0.00031 19.9 0.2 0.0044 16.1 0.0 2.2 1 1 1 2 2 2 1 ATPase MipZ AAA_25 PF13481.1 gi|296242529|ref|YP_003650016.1| - 0.0011 18.4 0.0 0.0033 16.8 0.0 1.8 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|296242529|ref|YP_003650016.1| - 0.0057 17.4 0.1 0.02 15.6 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|296242529|ref|YP_003650016.1| - 0.018 15.3 0.2 0.047 13.9 0.1 1.8 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|296242529|ref|YP_003650016.1| - 0.026 14.0 0.7 0.055 13.0 0.5 1.7 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|296242529|ref|YP_003650016.1| - 0.052 13.0 0.0 0.15 11.5 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DEAD PF00270.24 gi|296242529|ref|YP_003650016.1| - 0.062 12.7 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|296242529|ref|YP_003650016.1| - 0.079 12.9 0.0 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|296242529|ref|YP_003650016.1| - 0.093 12.1 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain IstB_IS21 PF01695.12 gi|296242529|ref|YP_003650016.1| - 0.1 12.0 1.0 4.8 6.5 0.2 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_NifH PF00142.13 gi|296242529|ref|YP_003650016.1| - 0.11 11.6 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 2-Hacid_dh_C PF02826.14 gi|296242531|ref|YP_003650018.1| - 1.4e-61 206.7 0.0 2.8e-61 205.7 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|296242531|ref|YP_003650018.1| - 2e-24 85.5 0.0 2.2e-24 85.4 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|296242531|ref|YP_003650018.1| - 1.3e-07 31.6 0.1 3.3e-07 30.2 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|296242531|ref|YP_003650018.1| - 0.00042 19.7 0.0 0.0027 17.0 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|296242531|ref|YP_003650018.1| - 0.00051 20.4 0.0 0.0015 18.9 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|296242531|ref|YP_003650018.1| - 0.00059 20.0 0.0 0.0017 18.5 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.16 gi|296242531|ref|YP_003650018.1| - 0.00085 19.1 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|296242531|ref|YP_003650018.1| - 0.014 15.0 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|296242531|ref|YP_003650018.1| - 0.017 15.3 0.0 0.037 14.3 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain adh_short PF00106.20 gi|296242531|ref|YP_003650018.1| - 0.026 14.4 0.2 0.057 13.3 0.2 1.5 1 0 0 1 1 1 0 short chain dehydrogenase TrkA_N PF02254.13 gi|296242531|ref|YP_003650018.1| - 0.029 14.3 0.0 0.12 12.4 0.0 2.1 2 1 0 2 2 2 0 TrkA-N domain NAD_Gly3P_dh_N PF01210.18 gi|296242531|ref|YP_003650018.1| - 0.029 14.0 0.1 0.094 12.4 0.0 2.0 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.4 gi|296242531|ref|YP_003650018.1| - 0.079 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Rossmann-like domain Shikimate_DH PF01488.15 gi|296242531|ref|YP_003650018.1| - 0.083 12.9 0.0 0.2 11.7 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase T2SE PF00437.15 gi|296242533|ref|YP_003650020.1| - 1.4e-39 135.6 0.0 2.1e-39 135.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|296242533|ref|YP_003650020.1| - 0.00051 19.5 0.0 0.001 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|296242533|ref|YP_003650020.1| - 0.0019 18.4 0.0 0.004 17.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter cobW PF02492.14 gi|296242533|ref|YP_003650020.1| - 0.0021 17.5 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|296242533|ref|YP_003650020.1| - 0.0054 16.8 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|296242533|ref|YP_003650020.1| - 0.0067 15.5 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|296242533|ref|YP_003650020.1| - 0.022 14.7 0.0 0.05 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|296242533|ref|YP_003650020.1| - 0.054 13.9 0.0 0.1 13.1 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_23 PF13476.1 gi|296242533|ref|YP_003650020.1| - 0.057 13.7 0.1 0.094 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|296242533|ref|YP_003650020.1| - 0.059 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|296242533|ref|YP_003650020.1| - 0.07 12.2 0.1 0.2 10.8 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|296242533|ref|YP_003650020.1| - 0.074 12.7 0.1 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|296242533|ref|YP_003650020.1| - 0.094 12.2 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|296242533|ref|YP_003650020.1| - 0.12 11.8 0.1 0.24 10.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|296242533|ref|YP_003650020.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_21 PF13304.1 gi|296242533|ref|YP_003650020.1| - 0.13 12.2 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|296242533|ref|YP_003650020.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|296242533|ref|YP_003650020.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|296242533|ref|YP_003650020.1| - 0.19 10.2 0.0 0.29 9.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|296242533|ref|YP_003650020.1| - 0.2 11.6 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RtcB PF01139.12 gi|296242535|ref|YP_003650022.1| - 2.2e-152 507.9 0.0 2.4e-152 507.7 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF2276 PF10040.4 gi|296242536|ref|YP_003650023.1| - 0.001 19.2 1.0 0.0023 18.1 0.7 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HD PF01966.17 gi|296242537|ref|YP_003650024.1| - 0.00028 20.8 1.6 0.00061 19.8 1.1 1.6 1 1 0 1 1 1 1 HD domain DEAD PF00270.24 gi|296242538|ref|YP_003650025.1| - 3.4e-10 39.6 0.3 1.4e-08 34.4 0.1 2.7 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|296242538|ref|YP_003650025.1| - 0.00016 21.4 0.2 0.00037 20.2 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|296242538|ref|YP_003650025.1| - 0.00029 20.7 0.0 0.00068 19.5 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4350 PF14258.1 gi|296242538|ref|YP_003650025.1| - 0.031 14.4 0.1 0.85 9.8 0.1 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4350) Cas_Cas5d PF09704.5 gi|296242540|ref|YP_003650027.1| - 1.4e-05 24.7 0.0 3.2e-05 23.6 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.11 gi|296242541|ref|YP_003650028.1| - 2.8e-67 226.3 0.1 3.7e-67 226.0 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Csa5 PF09702.5 gi|296242542|ref|YP_003650029.1| - 0.00022 21.2 0.0 0.00026 21.0 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) DUF3974 PF13120.1 gi|296242542|ref|YP_003650029.1| - 0.1 12.4 0.0 0.28 11.0 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3974) HTH_24 PF13412.1 gi|296242543|ref|YP_003650030.1| - 2e-08 33.4 0.2 9.7e-08 31.2 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|296242543|ref|YP_003650030.1| - 4.7e-06 26.0 0.4 9.7e-06 25.0 0.1 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|296242543|ref|YP_003650030.1| - 8.9e-06 25.2 0.3 2.5e-05 23.8 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|296242543|ref|YP_003650030.1| - 1.3e-05 25.3 0.4 5.4e-05 23.4 0.1 2.2 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|296242543|ref|YP_003650030.1| - 5.2e-05 22.6 1.3 0.00013 21.4 0.9 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|296242543|ref|YP_003650030.1| - 0.00014 21.4 0.1 0.0026 17.4 0.0 2.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|296242543|ref|YP_003650030.1| - 0.0013 18.5 0.2 0.0043 16.8 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|296242543|ref|YP_003650030.1| - 0.0018 17.9 0.0 0.022 14.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|296242543|ref|YP_003650030.1| - 0.0018 17.9 0.1 0.017 14.8 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_10 PF04967.7 gi|296242543|ref|YP_003650030.1| - 0.005 16.4 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain FeoC PF09012.5 gi|296242543|ref|YP_003650030.1| - 0.0072 16.0 0.0 0.027 14.1 0.0 1.8 2 0 0 2 2 2 1 FeoC like transcriptional regulator Sigma70_r4 PF04545.11 gi|296242543|ref|YP_003650030.1| - 0.033 13.4 0.5 0.07 12.4 0.3 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 RP-C PF03428.8 gi|296242543|ref|YP_003650030.1| - 0.035 13.5 0.1 0.18 11.2 0.0 2.0 2 1 0 2 2 2 0 Replication protein C N-terminal domain LexA_DNA_bind PF01726.11 gi|296242543|ref|YP_003650030.1| - 0.052 13.1 0.0 0.42 10.2 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain Sulfolobus_pRN PF05584.6 gi|296242543|ref|YP_003650030.1| - 0.063 13.2 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_23 PF13384.1 gi|296242543|ref|YP_003650030.1| - 0.1 12.3 0.1 2.2 8.0 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain TrmB PF01978.14 gi|296242544|ref|YP_003650031.1| - 9.1e-07 28.4 0.1 1.7e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|296242544|ref|YP_003650031.1| - 1.9e-06 27.4 0.1 5.5e-06 25.9 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|296242544|ref|YP_003650031.1| - 3.5e-06 26.3 0.1 5.2e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|296242544|ref|YP_003650031.1| - 5.7e-05 22.6 0.0 0.00013 21.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|296242544|ref|YP_003650031.1| - 0.0001 22.0 0.1 0.00018 21.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|296242544|ref|YP_003650031.1| - 0.00016 21.1 0.0 0.00032 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|296242544|ref|YP_003650031.1| - 0.00026 20.3 0.1 0.00045 19.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|296242544|ref|YP_003650031.1| - 0.0005 19.3 0.2 0.00082 18.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HrcA_DNA-bdg PF03444.10 gi|296242544|ref|YP_003650031.1| - 0.00059 19.2 0.0 0.0016 17.8 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_IclR PF09339.5 gi|296242544|ref|YP_003650031.1| - 0.0011 18.5 0.0 0.0024 17.4 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|296242544|ref|YP_003650031.1| - 0.0011 18.1 0.0 0.0026 16.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|296242544|ref|YP_003650031.1| - 0.0016 17.6 0.0 0.003 16.8 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_17 PF12728.2 gi|296242544|ref|YP_003650031.1| - 0.0019 18.4 0.1 0.0036 17.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|296242544|ref|YP_003650031.1| - 0.0022 18.0 0.0 0.0038 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|296242544|ref|YP_003650031.1| - 0.0025 17.4 0.8 0.0035 16.9 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|296242544|ref|YP_003650031.1| - 0.0043 17.1 0.1 0.013 15.5 0.1 1.7 1 1 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|296242544|ref|YP_003650031.1| - 0.0044 17.3 0.0 0.0077 16.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|296242544|ref|YP_003650031.1| - 0.0076 16.3 0.1 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix DUF746 PF05344.6 gi|296242544|ref|YP_003650031.1| - 0.0095 15.4 0.0 0.022 14.2 0.0 1.6 1 0 0 1 1 1 1 Domain of Unknown Function (DUF746) HTH_11 PF08279.7 gi|296242544|ref|YP_003650031.1| - 0.011 15.3 0.1 0.021 14.4 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF387 PF04079.11 gi|296242544|ref|YP_003650031.1| - 0.013 14.8 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) RPA_C PF08784.6 gi|296242544|ref|YP_003650031.1| - 0.014 15.8 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_Crp_2 PF13545.1 gi|296242544|ref|YP_003650031.1| - 0.031 14.0 0.1 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|296242544|ref|YP_003650031.1| - 0.032 13.9 0.0 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator Penicillinase_R PF03965.11 gi|296242544|ref|YP_003650031.1| - 0.044 13.8 0.0 0.071 13.2 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HemN_C PF06969.11 gi|296242544|ref|YP_003650031.1| - 0.061 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_28 PF13518.1 gi|296242544|ref|YP_003650031.1| - 0.074 13.0 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|296242544|ref|YP_003650031.1| - 0.076 12.8 0.3 0.17 11.7 0.0 1.8 2 0 0 2 2 1 0 NUMOD1 domain GntR PF00392.16 gi|296242544|ref|YP_003650031.1| - 0.089 12.2 0.2 0.19 11.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.14 gi|296242544|ref|YP_003650031.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.12 gi|296242544|ref|YP_003650031.1| - 0.17 11.3 0.2 0.41 10.1 0.0 1.6 2 0 0 2 2 2 0 TFIIE alpha subunit Cas_Cas4 PF01930.12 gi|296242545|ref|YP_003650032.1| - 5.2e-06 26.4 0.0 6.1e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 CRISPR_Cas2 PF09827.4 gi|296242546|ref|YP_003650033.1| - 8.5e-15 54.6 0.0 1e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|296242547|ref|YP_003650034.1| - 9e-65 218.5 0.0 1.1e-64 218.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 DUF911 PF06023.7 gi|296242548|ref|YP_003650035.1| - 2.8e-68 230.2 0.0 3.6e-68 229.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) PDDEXK_1 PF12705.2 gi|296242548|ref|YP_003650035.1| - 2.7e-08 33.4 0.0 3.7e-08 33.0 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|296242548|ref|YP_003650035.1| - 0.0036 17.2 0.0 0.21 11.4 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF83 Exo5 PF09810.4 gi|296242548|ref|YP_003650035.1| - 0.036 13.3 0.0 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 Exonuclease V - a 5' deoxyribonuclease Metallophos PF00149.23 gi|296242550|ref|YP_003650037.1| - 1.3e-13 50.7 0.0 1.9e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|296242550|ref|YP_003650037.1| - 5.7e-12 45.7 0.0 1.2e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DNA_pol_E_B PF04042.11 gi|296242550|ref|YP_003650037.1| - 0.0052 16.0 0.0 0.014 14.7 0.0 1.6 1 1 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B VIT1 PF01988.14 gi|296242550|ref|YP_003650037.1| - 0.16 11.4 0.2 0.29 10.6 0.1 1.3 1 0 0 1 1 1 0 VIT family SMC_N PF02463.14 gi|296242551|ref|YP_003650038.1| - 5.9e-22 77.9 6.8 1.5e-21 76.6 4.7 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|296242551|ref|YP_003650038.1| - 9.8e-21 75.0 12.3 9.8e-21 75.0 8.5 6.4 1 1 2 3 3 2 1 AAA domain AAA_13 PF13166.1 gi|296242551|ref|YP_003650038.1| - 1.3e-17 63.5 61.4 1.4e-08 33.7 14.6 5.2 2 1 2 5 5 5 4 AAA domain AAA_21 PF13304.1 gi|296242551|ref|YP_003650038.1| - 1.3e-13 51.6 9.0 5.7e-06 26.5 0.0 3.5 3 1 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|296242551|ref|YP_003650038.1| - 3.8e-11 42.7 5.6 2.2e-05 23.7 0.0 3.6 3 0 0 3 3 3 2 AAA ATPase domain SbcCD_C PF13558.1 gi|296242551|ref|YP_003650038.1| - 1.2e-08 34.6 0.0 4.5e-08 32.9 0.0 2.0 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit Reo_sigmaC PF04582.7 gi|296242551|ref|YP_003650038.1| - 3.6e-08 32.9 18.2 0.0002 20.6 1.2 5.1 2 2 2 4 4 4 3 Reovirus sigma C capsid protein Rad50_zn_hook PF04423.9 gi|296242551|ref|YP_003650038.1| - 1.6e-07 30.6 2.9 1.6e-07 30.6 2.0 9.8 12 2 0 12 12 9 1 Rad50 zinc hook motif Baculo_PEP_C PF04513.7 gi|296242551|ref|YP_003650038.1| - 2.8e-07 30.4 17.4 0.27 11.0 0.0 6.3 2 2 3 6 6 6 3 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|296242551|ref|YP_003650038.1| - 1.7e-06 26.9 88.9 0.015 14.0 4.6 5.3 1 1 3 5 5 5 4 Spc7 kinetochore protein AAA_29 PF13555.1 gi|296242551|ref|YP_003650038.1| - 4e-06 26.2 0.0 9.7e-06 25.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain GAS PF13851.1 gi|296242551|ref|YP_003650038.1| - 1e-05 24.8 102.6 0.023 13.8 7.5 6.3 3 3 3 6 6 6 4 Growth-arrest specific micro-tubule binding Atg14 PF10186.4 gi|296242551|ref|YP_003650038.1| - 2.5e-05 23.4 14.8 2.5e-05 23.4 10.3 5.9 1 1 2 3 3 2 1 UV radiation resistance protein and autophagy-related subunit 14 AAA_27 PF13514.1 gi|296242551|ref|YP_003650038.1| - 4.7e-05 21.3 94.7 0.001 16.8 15.1 5.0 2 1 1 4 4 4 3 AAA domain Cast PF10174.4 gi|296242551|ref|YP_003650038.1| - 0.00013 20.1 71.2 0.00013 20.1 49.3 2.1 1 1 1 2 2 1 1 RIM-binding protein of the cytomatrix active zone CENP-F_leu_zip PF10473.4 gi|296242551|ref|YP_003650038.1| - 0.00015 21.6 119.6 0.043 13.6 20.8 6.9 2 2 5 7 7 7 5 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ABC_tran PF00005.22 gi|296242551|ref|YP_003650038.1| - 0.00022 21.5 17.1 0.00051 20.3 0.0 5.4 2 1 0 2 2 1 1 ABC transporter NPV_P10 PF05531.7 gi|296242551|ref|YP_003650038.1| - 0.00047 20.3 18.6 13 6.0 0.1 8.4 4 3 3 7 7 7 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.6 gi|296242551|ref|YP_003650038.1| - 0.00091 19.0 60.4 0.37 10.7 0.6 11.7 6 4 4 11 11 11 3 Flagella accessory protein C (FlaC) MscS_porin PF12795.2 gi|296242551|ref|YP_003650038.1| - 0.001 18.4 84.5 0.057 12.7 10.9 5.7 2 2 2 4 4 4 2 Mechanosensitive ion channel porin domain Filament PF00038.16 gi|296242551|ref|YP_003650038.1| - 0.0039 16.6 12.4 0.0039 16.6 8.6 4.8 1 1 3 4 4 2 1 Intermediate filament protein DUF948 PF06103.6 gi|296242551|ref|YP_003650038.1| - 0.0053 16.5 17.2 3.2 7.6 0.0 7.3 5 2 3 8 8 8 1 Bacterial protein of unknown function (DUF948) WXG100 PF06013.7 gi|296242551|ref|YP_003650038.1| - 0.0084 16.0 26.0 0.018 15.0 0.2 7.7 6 2 2 8 8 7 1 Proteins of 100 residues with WXG TBPIP PF07106.8 gi|296242551|ref|YP_003650038.1| - 0.0094 15.5 75.2 0.091 12.3 6.9 6.9 2 2 3 5 5 5 3 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) HrpB7 PF09486.5 gi|296242551|ref|YP_003650038.1| - 0.011 15.6 4.8 0.011 15.6 3.3 7.9 3 2 4 8 8 6 0 Bacterial type III secretion protein (HrpB7) Phytochelatin PF05023.9 gi|296242551|ref|YP_003650038.1| - 0.014 14.3 0.1 0.042 12.8 0.1 1.8 1 0 0 1 1 1 0 Phytochelatin synthase IncA PF04156.9 gi|296242551|ref|YP_003650038.1| - 0.019 14.5 116.4 0.19 11.2 16.9 6.0 1 1 4 5 5 4 0 IncA protein IF3_N PF05198.11 gi|296242551|ref|YP_003650038.1| - 0.024 14.5 2.3 2.2 8.2 0.3 3.2 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain MobB PF03205.9 gi|296242551|ref|YP_003650038.1| - 0.041 13.5 0.4 0.59 9.8 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Syntaxin-6_N PF09177.6 gi|296242551|ref|YP_003650038.1| - 0.079 13.3 59.2 0.1 13.0 2.9 8.3 2 2 3 6 6 6 0 Syntaxin 6, N-terminal ATG16 PF08614.6 gi|296242551|ref|YP_003650038.1| - 0.16 11.7 88.9 0.016 15.0 8.0 6.7 1 1 5 6 6 6 0 Autophagy protein 16 (ATG16) Laminin_II PF06009.7 gi|296242551|ref|YP_003650038.1| - 0.45 10.2 63.8 0.45 10.2 2.3 7.0 2 2 6 8 8 7 0 Laminin Domain II DUF869 PF05911.6 gi|296242551|ref|YP_003650038.1| - 0.57 8.3 76.7 0.085 11.0 10.0 3.3 1 1 1 3 3 3 0 Plant protein of unknown function (DUF869) Laminin_I PF06008.9 gi|296242551|ref|YP_003650038.1| - 1 8.5 79.3 0.02 14.2 4.1 6.1 2 2 2 5 5 5 0 Laminin Domain I DASH_Hsk3 PF08227.6 gi|296242551|ref|YP_003650038.1| - 1.1 9.4 5.1 4.3 7.6 0.0 4.0 4 0 0 4 4 2 0 DASH complex subunit Hsk3 like EzrA PF06160.7 gi|296242551|ref|YP_003650038.1| - 2.8 6.0 74.4 0.09 10.9 8.9 5.0 2 2 2 4 4 3 0 Septation ring formation regulator, EzrA DUF3584 PF12128.3 gi|296242551|ref|YP_003650038.1| - 3 5.0 88.4 0.0045 14.3 24.5 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF3584) V_ATPase_I PF01496.14 gi|296242551|ref|YP_003650038.1| - 3.9 5.2 71.6 0.034 12.0 10.1 4.8 1 1 4 5 5 5 0 V-type ATPase 116kDa subunit family Mnd1 PF03962.10 gi|296242551|ref|YP_003650038.1| - 5.5 6.6 89.5 1.1 8.8 8.4 7.3 2 2 4 6 6 6 0 Mnd1 family TMP_2 PF06791.8 gi|296242551|ref|YP_003650038.1| - 5.9 6.4 9.3 8.8 5.8 0.1 3.6 2 1 0 3 3 3 0 Prophage tail length tape measure protein DUF1664 PF07889.7 gi|296242551|ref|YP_003650038.1| - 7.6 6.3 45.7 0.85 9.4 1.0 6.9 2 2 7 9 9 9 0 Protein of unknown function (DUF1664) NurA PF09376.5 gi|296242552|ref|YP_003650039.1| - 7.5e-28 97.6 0.1 1.8e-27 96.4 0.1 1.6 1 1 0 1 1 1 1 NurA domain DUF87 PF01935.12 gi|296242553|ref|YP_003650040.1| - 4.4e-44 151.0 0.5 6.3e-44 150.5 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|296242553|ref|YP_003650040.1| - 4e-20 72.4 0.0 1.6e-14 54.0 0.0 2.9 2 1 1 3 3 3 2 AAA-like domain DUF853 PF05872.7 gi|296242553|ref|YP_003650040.1| - 1.8e-08 33.2 0.1 2.1e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.5 gi|296242553|ref|YP_003650040.1| - 0.0093 15.8 0.0 0.036 13.9 0.0 2.0 1 0 0 1 1 1 1 HAS barrel domain HAD_2 PF13419.1 gi|296242553|ref|YP_003650040.1| - 0.025 14.7 0.0 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_hydro_35 PF01301.14 gi|296242553|ref|YP_003650040.1| - 0.028 13.7 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 35 FtsK_SpoIIIE PF01580.13 gi|296242553|ref|YP_003650040.1| - 0.043 13.2 0.0 0.55 9.6 0.0 2.3 2 1 0 2 2 2 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|296242553|ref|YP_003650040.1| - 0.052 12.1 0.0 0.43 9.1 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain tRNA-synt_His PF13393.1 gi|296242554|ref|YP_003650041.1| - 6.3e-52 176.5 0.0 8.1e-52 176.2 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|296242554|ref|YP_003650041.1| - 1.6e-21 76.6 0.0 2.3e-21 76.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|296242554|ref|YP_003650041.1| - 1.4e-09 37.7 0.0 8.9e-09 35.1 0.0 2.2 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|296242554|ref|YP_003650041.1| - 0.00088 18.5 0.0 0.0072 15.5 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|296242554|ref|YP_003650041.1| - 0.0013 17.5 0.8 0.097 11.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA_int_endo PF01974.12 gi|296242555|ref|YP_003650042.1| - 8.1e-09 35.1 0.0 1.3e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|296242555|ref|YP_003650042.1| - 3.7e-08 32.8 0.0 7.5e-08 31.8 0.0 1.5 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain IF-2B PF01008.12 gi|296242556|ref|YP_003650043.1| - 1.6e-78 263.5 0.1 1.9e-78 263.3 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Nitroreductase PF00881.19 gi|296242558|ref|YP_003650045.1| - 9.7e-31 106.8 0.0 1.3e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|296242558|ref|YP_003650045.1| - 0.0048 16.1 0.2 0.015 14.4 0.0 1.8 2 1 0 2 2 2 1 Putative TM nitroreductase SWIM PF04434.12 gi|296242559|ref|YP_003650046.1| - 0.0031 16.9 1.2 0.009 15.4 0.8 1.9 1 1 0 1 1 1 1 SWIM zinc finger Elf1 PF05129.8 gi|296242560|ref|YP_003650047.1| - 1e-20 73.2 0.0 1.2e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|296242560|ref|YP_003650047.1| - 3.6e-05 22.9 0.1 7.6e-05 21.9 0.1 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|296242560|ref|YP_003650047.1| - 9.2e-05 22.6 0.1 0.00015 21.9 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|296242560|ref|YP_003650047.1| - 0.042 13.9 0.8 0.042 13.9 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Ribosomal_L32p PF01783.18 gi|296242560|ref|YP_003650047.1| - 0.063 13.4 0.8 0.063 13.4 0.6 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family Zn_Tnp_IS1595 PF12760.2 gi|296242560|ref|YP_003650047.1| - 0.09 12.5 2.1 0.53 10.1 1.5 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|296242560|ref|YP_003650047.1| - 0.11 11.7 4.6 1 8.6 3.2 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|296242560|ref|YP_003650047.1| - 0.21 11.1 1.6 8.3 5.9 0.2 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.1 gi|296242560|ref|YP_003650047.1| - 0.57 10.2 3.4 1.5 8.9 0.1 2.6 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Mss51 PF13824.1 gi|296242560|ref|YP_003650047.1| - 0.71 9.7 2.3 3.8 7.4 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.1 gi|296242560|ref|YP_003650047.1| - 1.5 8.4 4.6 2.3 7.8 0.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|296242560|ref|YP_003650047.1| - 2.3 7.8 4.4 7.3 6.2 0.7 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|296242560|ref|YP_003650047.1| - 3.9 7.0 6.1 9.6 5.8 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PcrB PF01884.12 gi|296242561|ref|YP_003650048.1| - 5.2e-64 215.6 0.1 6.2e-64 215.4 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|296242561|ref|YP_003650048.1| - 3.1e-07 29.9 0.0 4.2e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|296242561|ref|YP_003650048.1| - 2.6e-05 22.9 0.3 0.00059 18.4 0.2 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain NanE PF04131.9 gi|296242561|ref|YP_003650048.1| - 9.7e-05 21.4 0.5 0.00037 19.5 0.1 1.9 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IMPDH PF00478.20 gi|296242561|ref|YP_003650048.1| - 0.0032 16.4 0.1 0.0074 15.2 0.0 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.16 gi|296242561|ref|YP_003650048.1| - 0.0076 15.2 0.1 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|296242561|ref|YP_003650048.1| - 0.028 13.5 0.1 0.099 11.7 0.0 1.8 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI IGPS PF00218.16 gi|296242561|ref|YP_003650048.1| - 0.071 12.1 0.2 3.2 6.7 0.0 2.5 3 0 0 3 3 3 0 Indole-3-glycerol phosphate synthase Ribul_P_3_epim PF00834.14 gi|296242561|ref|YP_003650048.1| - 0.09 11.8 0.1 0.26 10.3 0.0 1.8 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family MazG PF03819.12 gi|296242562|ref|YP_003650049.1| - 2.2e-12 46.7 0.9 2.9e-12 46.3 0.6 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain DUF3052 PF11253.3 gi|296242562|ref|YP_003650049.1| - 0.014 14.9 0.1 0.016 14.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) PRA-PH PF01503.12 gi|296242562|ref|YP_003650049.1| - 0.015 15.5 0.3 0.018 15.2 0.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase HHH_7 PF14635.1 gi|296242562|ref|YP_003650049.1| - 0.11 12.5 0.4 0.18 11.8 0.1 1.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif Sec61_beta PF03911.11 gi|296242563|ref|YP_003650050.1| - 1.5e-10 40.6 0.7 1.7e-10 40.5 0.5 1.1 1 0 0 1 1 1 1 Sec61beta family TPP_enzyme_C PF02775.16 gi|296242564|ref|YP_003650051.1| - 2.1e-23 82.6 0.6 3.1e-23 82.0 0.4 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|296242564|ref|YP_003650051.1| - 0.0001 21.3 1.2 0.0002 20.4 0.7 1.4 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.14 gi|296242565|ref|YP_003650052.1| - 1e-67 228.0 0.5 1.3e-67 227.6 0.3 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|296242565|ref|YP_003650052.1| - 3.2e-05 23.8 0.0 8.8e-05 22.4 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|296242565|ref|YP_003650052.1| - 0.049 13.1 0.2 0.17 11.3 0.1 1.9 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4 PF00037.22 gi|296242566|ref|YP_003650053.1| - 2.9e-14 51.9 15.5 4.9e-09 35.4 3.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|296242566|ref|YP_003650053.1| - 1.6e-10 40.3 14.8 5.3e-06 26.0 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|296242566|ref|YP_003650053.1| - 1.9e-10 40.9 12.7 2.8e-10 40.4 8.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242566|ref|YP_003650053.1| - 6.8e-10 38.5 10.9 1.4e-09 37.5 7.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|296242566|ref|YP_003650053.1| - 1.1e-09 37.9 10.9 1.9e-09 37.2 7.6 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242566|ref|YP_003650053.1| - 1.5e-09 38.4 6.8 5.6e-05 23.7 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|296242566|ref|YP_003650053.1| - 3.8e-09 35.9 14.6 7.2e-05 22.4 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296242566|ref|YP_003650053.1| - 7.9e-09 35.4 5.2 0.00042 20.2 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|296242566|ref|YP_003650053.1| - 1.1e-08 35.1 12.9 1.5e-08 34.7 8.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296242566|ref|YP_003650053.1| - 1e-06 28.9 4.0 0.0085 16.4 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|296242566|ref|YP_003650053.1| - 1.5e-06 28.5 7.1 0.0078 16.6 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|296242566|ref|YP_003650053.1| - 0.00011 22.2 15.1 0.0085 16.3 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|296242566|ref|YP_003650053.1| - 0.00029 21.3 14.9 0.029 14.9 3.1 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|296242566|ref|YP_003650053.1| - 0.0004 20.7 19.3 0.032 14.7 5.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|296242566|ref|YP_003650053.1| - 0.0044 17.3 9.9 0.17 12.2 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|296242566|ref|YP_003650053.1| - 0.0059 16.4 6.0 0.011 15.5 4.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain POR PF01558.13 gi|296242567|ref|YP_003650054.1| - 1.2e-35 122.9 3.0 1.4e-35 122.7 2.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PYC_OADA PF02436.13 gi|296242571|ref|YP_003650058.1| - 4.8e-60 202.3 0.0 7.8e-60 201.6 0.0 1.3 1 0 0 1 1 1 1 Conserved carboxylase domain HMGL-like PF00682.14 gi|296242571|ref|YP_003650058.1| - 1.4e-38 132.9 0.0 1.9e-38 132.4 0.0 1.1 1 0 0 1 1 1 1 HMGL-like PCNA_N PF00705.13 gi|296242572|ref|YP_003650059.1| - 5.1e-10 38.9 0.1 9.7e-10 38.0 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|296242572|ref|YP_003650059.1| - 6e-08 32.6 0.2 1.2e-06 28.4 0.0 2.8 2 2 1 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|296242572|ref|YP_003650059.1| - 1.8e-05 23.7 0.1 0.12 11.0 0.0 2.1 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Hus1 PF04005.7 gi|296242572|ref|YP_003650059.1| - 0.01 14.8 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 Hus1-like protein AAA_10 PF12846.2 gi|296242575|ref|YP_003650062.1| - 3.9e-25 88.9 0.0 5e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|296242575|ref|YP_003650062.1| - 1.6e-14 54.2 0.0 2.8e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|296242575|ref|YP_003650062.1| - 1.1e-08 34.1 0.0 5.7e-07 28.4 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.7 gi|296242575|ref|YP_003650062.1| - 2.3e-05 22.9 0.0 8.1e-05 21.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|296242575|ref|YP_003650062.1| - 4.3e-05 23.6 0.0 0.0042 17.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain TraG-D_C PF12696.2 gi|296242575|ref|YP_003650062.1| - 8.1e-05 22.4 0.0 0.00014 21.7 0.0 1.4 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG CbiA PF01656.18 gi|296242575|ref|YP_003650062.1| - 0.0006 19.2 0.0 0.0012 18.2 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.24 gi|296242575|ref|YP_003650062.1| - 0.0035 17.5 0.0 0.33 11.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Pox_A32 PF04665.7 gi|296242575|ref|YP_003650062.1| - 0.0041 16.4 0.0 0.69 9.1 0.0 2.2 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_16 PF13191.1 gi|296242575|ref|YP_003650062.1| - 0.0056 16.6 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|296242575|ref|YP_003650062.1| - 0.0087 16.8 0.0 0.016 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|296242575|ref|YP_003650062.1| - 0.0097 15.6 0.1 0.018 14.7 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activat PF00158.21 gi|296242575|ref|YP_003650062.1| - 0.011 15.1 0.0 0.019 14.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.1 gi|296242575|ref|YP_003650062.1| - 0.012 15.2 0.0 0.032 13.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|296242575|ref|YP_003650062.1| - 0.016 15.5 0.0 0.029 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zot PF05707.7 gi|296242575|ref|YP_003650062.1| - 0.017 14.6 0.0 0.25 10.7 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|296242575|ref|YP_003650062.1| - 0.02 14.3 0.0 0.054 12.9 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|296242575|ref|YP_003650062.1| - 0.022 13.8 0.0 0.039 13.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ArgK PF03308.11 gi|296242575|ref|YP_003650062.1| - 0.024 13.4 0.1 0.04 12.6 0.0 1.3 1 0 0 1 1 1 0 ArgK protein Arch_ATPase PF01637.13 gi|296242575|ref|YP_003650062.1| - 0.027 14.1 0.0 0.27 10.8 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase T2SE PF00437.15 gi|296242575|ref|YP_003650062.1| - 0.036 12.9 0.0 0.067 12.0 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|296242575|ref|YP_003650062.1| - 0.037 14.2 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KaiC PF06745.8 gi|296242575|ref|YP_003650062.1| - 0.04 13.0 0.1 0.15 11.1 0.0 1.9 2 0 0 2 2 2 0 KaiC PhoH PF02562.11 gi|296242575|ref|YP_003650062.1| - 0.041 13.0 0.0 0.41 9.8 0.0 2.0 2 0 0 2 2 2 0 PhoH-like protein NACHT PF05729.7 gi|296242575|ref|YP_003650062.1| - 0.049 13.2 0.1 0.2 11.2 0.1 2.0 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.4 gi|296242575|ref|YP_003650062.1| - 0.055 12.4 0.0 0.077 11.9 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|296242575|ref|YP_003650062.1| - 0.057 12.8 0.0 0.18 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|296242575|ref|YP_003650062.1| - 0.062 13.6 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Sigma54_activ_2 PF14532.1 gi|296242575|ref|YP_003650062.1| - 0.066 13.2 0.0 1.5 8.8 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.8 gi|296242575|ref|YP_003650062.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|296242575|ref|YP_003650062.1| - 0.11 12.5 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|296242575|ref|YP_003650062.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|296242575|ref|YP_003650062.1| - 0.11 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|296242575|ref|YP_003650062.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|296242575|ref|YP_003650062.1| - 0.14 11.3 0.0 0.31 10.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Guanylate_kin PF00625.16 gi|296242575|ref|YP_003650062.1| - 0.21 10.9 0.0 0.49 9.8 0.0 1.5 1 0 0 1 1 1 0 Guanylate kinase DEAD PF00270.24 gi|296242576|ref|YP_003650063.1| - 1.7e-33 115.4 0.0 4.4e-30 104.3 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|296242576|ref|YP_003650063.1| - 1.7e-17 63.0 0.1 9.9e-16 57.3 0.1 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.6 gi|296242576|ref|YP_003650063.1| - 1.3e-12 47.8 0.0 2.9e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.10 gi|296242576|ref|YP_003650063.1| - 2.2e-06 27.6 0.0 1.2e-05 25.2 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|296242576|ref|YP_003650063.1| - 0.023 14.0 0.0 0.08 12.2 0.0 1.9 1 1 0 1 1 1 0 UvrD/REP helicase N-terminal domain SecA_DEAD PF07517.9 gi|296242576|ref|YP_003650063.1| - 0.045 13.0 0.0 0.086 12.1 0.0 1.4 1 0 0 1 1 1 0 SecA DEAD-like domain AAA_19 PF13245.1 gi|296242576|ref|YP_003650063.1| - 0.077 12.7 0.1 2.3 8.0 0.0 3.1 2 0 0 2 2 2 0 Part of AAA domain Nudix_N_2 PF14803.1 gi|296242576|ref|YP_003650063.1| - 0.093 12.4 0.8 0.27 10.9 0.6 1.8 1 0 0 1 1 1 0 Nudix N-terminal T4SS-DNA_transf PF02534.9 gi|296242576|ref|YP_003650063.1| - 0.12 10.9 0.0 0.19 10.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer AAA_11 PF13086.1 gi|296242576|ref|YP_003650063.1| - 0.12 11.8 0.0 0.36 10.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF2296 PF10058.4 gi|296242576|ref|YP_003650063.1| - 0.13 12.0 0.5 0.3 10.8 0.3 1.6 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-CHY PF05495.7 gi|296242576|ref|YP_003650063.1| - 0.29 11.2 0.5 0.58 10.3 0.3 1.4 1 0 0 1 1 1 0 CHY zinc finger PAPS_reduct PF01507.14 gi|296242577|ref|YP_003650064.1| - 8.5e-40 136.4 0.0 1.9e-39 135.2 0.0 1.6 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Trep_Strep PF09605.5 gi|296242578|ref|YP_003650065.1| - 0.0058 16.3 3.7 0.0066 16.1 2.6 1.0 1 0 0 1 1 1 1 Hypothetical bacterial integral membrane protein (Trep_Strep) FA_desaturase PF00487.19 gi|296242578|ref|YP_003650065.1| - 1.2 8.5 4.5 1.4 8.3 3.1 1.1 1 0 0 1 1 1 0 Fatty acid desaturase YtpI PF14007.1 gi|296242580|ref|YP_003650067.1| - 0.043 13.7 0.0 0.048 13.5 0.0 1.0 1 0 0 1 1 1 0 YtpI-like protein AAA_10 PF12846.2 gi|296242581|ref|YP_003650068.1| - 3.7e-17 62.7 0.0 1e-10 41.5 0.0 2.5 3 0 0 3 3 3 2 AAA-like domain DUF853 PF05872.7 gi|296242581|ref|YP_003650068.1| - 1e-09 37.3 0.0 0.00046 18.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|296242581|ref|YP_003650068.1| - 2.4e-06 27.5 0.2 5.2e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|296242581|ref|YP_003650068.1| - 0.00016 21.2 0.1 0.00075 19.0 0.0 2.0 2 0 0 2 2 2 1 FtsK/SpoIIIE family TraG-D_C PF12696.2 gi|296242581|ref|YP_003650068.1| - 0.00019 21.3 0.0 0.0004 20.2 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG TrwB_AAD_bind PF10412.4 gi|296242581|ref|YP_003650068.1| - 0.00026 19.7 0.0 0.017 13.7 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|296242581|ref|YP_003650068.1| - 0.00066 19.8 0.6 0.16 12.1 0.0 3.1 3 2 0 3 3 3 1 AAA domain NACHT PF05729.7 gi|296242581|ref|YP_003650068.1| - 0.007 16.0 0.2 0.075 12.6 0.1 2.5 2 0 0 2 2 2 1 NACHT domain Pox_A32 PF04665.7 gi|296242581|ref|YP_003650068.1| - 0.0089 15.3 0.1 1.3 8.2 0.0 2.7 3 0 0 3 3 3 1 Poxvirus A32 protein AAA_24 PF13479.1 gi|296242581|ref|YP_003650068.1| - 0.049 13.2 0.1 0.09 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|296242581|ref|YP_003650068.1| - 0.11 12.4 0.0 2.7 7.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|296242581|ref|YP_003650068.1| - 0.11 12.6 0.5 2.4 8.3 0.0 2.9 3 1 2 5 5 5 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|296242581|ref|YP_003650068.1| - 0.12 11.7 0.2 9 5.6 0.0 2.6 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.22 gi|296242581|ref|YP_003650068.1| - 0.15 12.3 0.0 0.67 10.2 0.0 2.0 2 0 0 2 2 2 0 ABC transporter Methyltrn_RNA_3 PF02598.12 gi|296242582|ref|YP_003650069.1| - 3.8e-27 95.4 0.0 3.5e-26 92.2 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.17 gi|296242583|ref|YP_003650070.1| - 1.2e-53 182.2 0.1 1.7e-53 181.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|296242584|ref|YP_003650071.1| - 2.6e-34 118.3 0.0 3.3e-34 117.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.15 gi|296242585|ref|YP_003650072.1| - 9.1e-19 67.2 3.2 1.3e-18 66.7 2.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L23 Mur_ligase_C PF02875.16 gi|296242585|ref|YP_003650072.1| - 0.14 12.2 0.0 0.18 11.8 0.0 1.1 1 0 0 1 1 1 0 Mur ligase family, glutamate ligase domain Ribosomal_L2_C PF03947.13 gi|296242586|ref|YP_003650073.1| - 3e-41 140.2 0.7 4e-41 139.8 0.5 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|296242586|ref|YP_003650073.1| - 1.1e-10 41.2 0.0 2.7e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain AAA_5 PF07728.9 gi|296242587|ref|YP_003650074.1| - 1e-17 64.1 0.0 2.1e-17 63.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|296242587|ref|YP_003650074.1| - 5.7e-05 22.7 0.0 0.00064 19.3 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|296242587|ref|YP_003650074.1| - 0.00094 19.3 0.5 0.012 15.8 0.2 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|296242587|ref|YP_003650074.1| - 0.00098 18.6 0.0 0.29 10.5 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.1 gi|296242587|ref|YP_003650074.1| - 0.015 15.0 0.0 0.034 13.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|296242587|ref|YP_003650074.1| - 0.019 15.3 0.0 0.04 14.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|296242587|ref|YP_003650074.1| - 0.052 13.1 0.0 0.091 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|296242587|ref|YP_003650074.1| - 0.059 12.9 0.0 0.094 12.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|296242587|ref|YP_003650074.1| - 0.064 12.3 0.0 4.1 6.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI VWA_CoxE PF05762.9 gi|296242588|ref|YP_003650075.1| - 2.7e-19 69.2 1.8 5.5e-19 68.1 1.3 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.1 gi|296242588|ref|YP_003650075.1| - 1.8e-06 28.1 0.0 3.7e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|296242588|ref|YP_003650075.1| - 0.0013 18.4 0.6 0.01 15.5 0.4 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain Ribosomal_S19 PF00203.16 gi|296242589|ref|YP_003650076.1| - 2.1e-31 107.3 0.3 2.8e-31 106.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.12 gi|296242589|ref|YP_003650076.1| - 0.077 13.2 0.2 0.13 12.5 0.2 1.3 1 0 0 1 1 1 0 bZIP Maf transcription factor Ribosomal_L22 PF00237.14 gi|296242590|ref|YP_003650077.1| - 3.4e-34 116.9 0.2 4.2e-34 116.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|296242591|ref|YP_003650078.1| - 5.8e-17 61.6 0.6 1.2e-16 60.6 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|296242591|ref|YP_003650078.1| - 4.2e-13 48.6 0.0 8.9e-13 47.6 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|296242591|ref|YP_003650078.1| - 0.00019 20.9 0.2 0.0006 19.4 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|296242591|ref|YP_003650078.1| - 0.023 14.3 0.0 0.047 13.3 0.0 1.6 1 0 0 1 1 1 0 KH domain KH_3 PF13014.1 gi|296242591|ref|YP_003650078.1| - 0.04 13.5 2.7 0.14 11.8 0.7 2.4 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|296242592|ref|YP_003650079.1| - 8e-22 76.6 5.0 1.2e-21 76.1 3.5 1.3 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.11 gi|296242593|ref|YP_003650080.1| - 3.2e-23 81.1 0.1 3.5e-23 81.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|296242594|ref|YP_003650081.1| - 8.1e-22 77.0 3.7 1.1e-21 76.6 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|296242595|ref|YP_003650082.1| - 4.6e-39 132.9 0.0 5.3e-39 132.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|296242596|ref|YP_003650083.1| - 2.6e-10 39.5 1.8 6.1e-10 38.4 1.2 1.7 1 0 0 1 1 1 1 KOW motif Ribosomal_S4e PF00900.15 gi|296242597|ref|YP_003650084.1| - 4.2e-28 96.8 0.1 7.3e-28 96.0 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|296242597|ref|YP_003650084.1| - 2.6e-16 59.1 3.4 4.5e-16 58.3 2.3 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|296242597|ref|YP_003650084.1| - 7.8e-11 41.2 0.2 2.9e-10 39.3 0.0 2.0 2 0 0 2 2 2 1 S4 domain KOW PF00467.24 gi|296242597|ref|YP_003650084.1| - 0.012 15.2 1.0 0.047 13.4 0.7 2.0 1 0 0 1 1 1 0 KOW motif S4_2 PF13275.1 gi|296242597|ref|YP_003650084.1| - 0.046 13.3 0.1 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 S4 domain Ribosomal_L5_C PF00673.16 gi|296242598|ref|YP_003650085.1| - 1.6e-21 75.8 0.0 3e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|296242598|ref|YP_003650085.1| - 5.9e-16 58.0 0.1 1.2e-15 57.0 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|296242599|ref|YP_003650086.1| - 1.8e-17 62.4 2.2 1.9e-17 62.3 1.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.14 gi|296242599|ref|YP_003650086.1| - 0.00034 20.4 0.4 0.00038 20.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family zf-FPG_IleRS PF06827.9 gi|296242599|ref|YP_003650086.1| - 0.026 14.1 1.8 0.045 13.4 1.2 1.4 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1595 PF12760.2 gi|296242599|ref|YP_003650086.1| - 0.036 13.8 2.5 0.043 13.6 1.7 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|296242599|ref|YP_003650086.1| - 0.089 12.8 2.6 0.55 10.3 1.8 2.0 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-P11 PF03854.9 gi|296242599|ref|YP_003650086.1| - 0.11 11.9 0.4 0.15 11.5 0.3 1.2 1 0 0 1 1 1 0 P-11 zinc finger Zn_Tnp_IS91 PF14319.1 gi|296242599|ref|YP_003650086.1| - 0.11 11.9 0.3 0.12 11.8 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF1451 PF07295.6 gi|296242599|ref|YP_003650086.1| - 0.11 12.2 0.5 0.13 11.9 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF2039 PF10217.4 gi|296242599|ref|YP_003650086.1| - 0.15 12.1 1.4 0.17 11.9 0.9 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) A2L_zn_ribbon PF08792.5 gi|296242599|ref|YP_003650086.1| - 0.24 10.9 1.2 0.34 10.4 0.8 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_S8 PF00410.14 gi|296242600|ref|YP_003650087.1| - 1.5e-26 92.7 0.0 2e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|296242601|ref|YP_003650088.1| - 2.3e-25 88.8 3.1 7.9e-18 64.7 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 PG_binding_4 PF12229.3 gi|296242601|ref|YP_003650088.1| - 0.07 13.3 0.3 0.3 11.3 0.0 1.9 2 0 0 2 2 2 0 Putative peptidoglycan binding domain DUF531 PF04407.7 gi|296242601|ref|YP_003650088.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF531) Ribosomal_L32e PF01655.13 gi|296242602|ref|YP_003650089.1| - 1.2e-36 125.0 0.0 1.5e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|296242603|ref|YP_003650090.1| - 7.6e-51 171.7 9.5 8.7e-51 171.5 6.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L18p PF00861.17 gi|296242604|ref|YP_003650091.1| - 1.4e-32 112.3 0.1 2.2e-32 111.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|296242604|ref|YP_003650091.1| - 3.2e-07 30.7 0.0 5.9e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_S5_C PF03719.10 gi|296242605|ref|YP_003650092.1| - 5.4e-25 86.4 0.0 1.1e-24 85.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|296242605|ref|YP_003650092.1| - 6.6e-21 73.8 4.0 9.5e-21 73.3 1.3 2.1 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_L30 PF00327.15 gi|296242606|ref|YP_003650093.1| - 3e-13 49.1 0.0 5.8e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|296242607|ref|YP_003650094.1| - 9.7e-32 110.0 3.0 1.2e-31 109.7 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L12 PF00542.14 gi|296242607|ref|YP_003650094.1| - 0.082 12.9 0.9 0.77 9.8 0.2 2.2 2 0 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain SecY PF00344.15 gi|296242608|ref|YP_003650095.1| - 8.4e-83 278.1 18.8 1.2e-82 277.6 13.0 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|296242608|ref|YP_003650095.1| - 2e-11 43.1 0.3 6.4e-11 41.5 0.2 2.0 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L34e PF01199.13 gi|296242610|ref|YP_003650097.1| - 5.9e-29 100.1 2.3 6.4e-29 100.0 1.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e zf-ribbon_3 PF13248.1 gi|296242610|ref|YP_003650097.1| - 0.013 14.6 0.4 2.5 7.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|296242610|ref|YP_003650097.1| - 0.076 12.8 0.2 0.13 12.0 0.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|296242610|ref|YP_003650097.1| - 0.099 12.1 0.7 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|296242610|ref|YP_003650097.1| - 0.63 9.7 2.5 24 4.7 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Cytidylate_kin2 PF13189.1 gi|296242611|ref|YP_003650098.1| - 3.6e-19 69.3 0.4 6.1e-17 62.1 0.3 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|296242611|ref|YP_003650098.1| - 6e-14 52.4 0.0 9.2e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|296242611|ref|YP_003650098.1| - 8.8e-14 52.3 0.1 1.4e-13 51.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|296242611|ref|YP_003650098.1| - 6.1e-08 32.6 0.0 1.5e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|296242611|ref|YP_003650098.1| - 1.1e-05 25.4 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|296242611|ref|YP_003650098.1| - 1.3e-05 24.8 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|296242611|ref|YP_003650098.1| - 0.00017 21.8 0.0 0.0003 20.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|296242611|ref|YP_003650098.1| - 0.0011 19.0 0.0 0.0023 18.0 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|296242611|ref|YP_003650098.1| - 0.0012 18.7 0.0 0.0039 17.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain CoaE PF01121.15 gi|296242611|ref|YP_003650098.1| - 0.0044 16.4 0.1 2.6 7.3 0.0 2.2 1 1 1 2 2 2 2 Dephospho-CoA kinase SKI PF01202.17 gi|296242611|ref|YP_003650098.1| - 0.0076 16.1 0.0 0.091 12.6 0.0 2.0 2 0 0 2 2 2 1 Shikimate kinase NTPase_1 PF03266.10 gi|296242611|ref|YP_003650098.1| - 0.0093 15.6 0.0 0.029 14.0 0.0 1.8 2 0 0 2 2 2 1 NTPase Thymidylate_kin PF02223.12 gi|296242611|ref|YP_003650098.1| - 0.015 14.6 0.0 0.3 10.4 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_5 PF07728.9 gi|296242611|ref|YP_003650098.1| - 0.028 14.1 0.1 0.08 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|296242611|ref|YP_003650098.1| - 0.029 14.0 0.0 0.045 13.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.1 gi|296242611|ref|YP_003650098.1| - 0.034 14.1 0.0 0.05 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_24 PF13479.1 gi|296242611|ref|YP_003650098.1| - 0.04 13.4 0.0 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.13 gi|296242611|ref|YP_003650098.1| - 0.053 12.9 0.2 0.081 12.3 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase DUF2226 PF09987.4 gi|296242611|ref|YP_003650098.1| - 0.055 12.5 0.2 0.31 10.1 0.2 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2226) AAA_10 PF12846.2 gi|296242611|ref|YP_003650098.1| - 0.057 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain KTI12 PF08433.5 gi|296242611|ref|YP_003650098.1| - 0.075 12.2 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|296242611|ref|YP_003650098.1| - 0.11 11.5 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|296242611|ref|YP_003650098.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.3 1 1 0 1 1 1 0 ABC transporter Mg_chelatase PF01078.16 gi|296242611|ref|YP_003650098.1| - 0.15 11.1 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI KOW PF00467.24 gi|296242612|ref|YP_003650099.1| - 0.00088 18.9 3.5 0.0015 18.1 2.4 1.4 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.12 gi|296242612|ref|YP_003650099.1| - 0.00094 19.4 0.0 0.0014 18.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L14 MTS PF05175.9 gi|296242613|ref|YP_003650100.1| - 1.6e-38 131.7 0.0 1.8e-38 131.6 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|296242613|ref|YP_003650100.1| - 3.2e-16 59.4 0.1 5.4e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|296242613|ref|YP_003650100.1| - 3.5e-13 49.3 0.0 4.9e-13 48.8 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|296242613|ref|YP_003650100.1| - 1.2e-12 47.6 0.0 1.5e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|296242613|ref|YP_003650100.1| - 1.4e-12 48.1 0.0 2.3e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|296242613|ref|YP_003650100.1| - 3.5e-09 36.5 0.0 4.3e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|296242613|ref|YP_003650100.1| - 1.4e-07 31.1 0.0 1.9e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.7 gi|296242613|ref|YP_003650100.1| - 9.1e-07 29.2 0.0 1.3e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|296242613|ref|YP_003650100.1| - 2.1e-06 28.0 0.0 3.6e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|296242613|ref|YP_003650100.1| - 1.6e-05 24.5 0.0 2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|296242613|ref|YP_003650100.1| - 4.5e-05 23.7 0.0 6.1e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|296242613|ref|YP_003650100.1| - 0.0001 21.9 0.0 0.00014 21.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|296242613|ref|YP_003650100.1| - 0.00043 20.0 0.0 0.00063 19.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.11 gi|296242613|ref|YP_003650100.1| - 0.0017 17.3 0.0 0.0021 17.0 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.10 gi|296242613|ref|YP_003650100.1| - 0.0019 17.5 0.0 0.0027 17.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.6 gi|296242613|ref|YP_003650100.1| - 0.0074 15.0 0.0 0.011 14.5 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase Ubie_methyltran PF01209.13 gi|296242613|ref|YP_003650100.1| - 0.011 14.8 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family GidB PF02527.10 gi|296242613|ref|YP_003650100.1| - 0.014 14.5 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G Methyltransf_4 PF02390.12 gi|296242613|ref|YP_003650100.1| - 0.019 14.0 0.0 0.027 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|296242613|ref|YP_003650100.1| - 0.042 13.5 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|296242613|ref|YP_003650100.1| - 0.056 12.5 0.0 0.087 11.9 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.14 gi|296242613|ref|YP_003650100.1| - 0.098 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.6 gi|296242613|ref|YP_003650100.1| - 0.11 11.4 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) NeA_P2 PF12312.3 gi|296242616|ref|YP_003650103.1| - 0.061 12.5 0.1 0.066 12.4 0.1 1.1 1 0 0 1 1 1 0 Nepovirus subgroup A polyprotein DNA_methylase PF00145.12 gi|296242618|ref|YP_003650105.1| - 6.5e-53 180.0 0.0 2.9e-52 177.8 0.0 2.0 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase HhH-GPD PF00730.20 gi|296242620|ref|YP_003650107.1| - 2.6e-16 59.8 0.0 3.3e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|296242620|ref|YP_003650107.1| - 1.4e-08 33.9 0.0 5e-08 32.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|296242620|ref|YP_003650107.1| - 0.0075 16.1 0.0 3.1 7.7 0.0 3.3 3 2 0 3 3 3 2 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|296242620|ref|YP_003650107.1| - 0.056 13.6 8.8 0.1 12.8 6.1 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Intg_mem_TP0381 PF09529.5 gi|296242621|ref|YP_003650108.1| - 0.069 12.3 0.2 0.074 12.2 0.1 1.1 1 0 0 1 1 1 0 Integral membrane protein (intg_mem_TP0381) zf-TFIIB PF13453.1 gi|296242622|ref|YP_003650109.1| - 0.0023 17.0 1.2 0.004 16.2 0.9 1.4 1 1 0 1 1 1 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|296242622|ref|YP_003650109.1| - 0.0027 16.8 2.7 0.1 11.8 0.3 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Cren7 PF11520.3 gi|296242622|ref|YP_003650109.1| - 0.0033 17.0 1.0 0.0093 15.5 0.0 2.1 2 1 0 2 2 2 1 Chromatin protein Cren7 zinc_ribbon_4 PF13717.1 gi|296242622|ref|YP_003650109.1| - 0.0049 16.5 0.2 2.6 7.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|296242622|ref|YP_003650109.1| - 0.0059 16.1 0.2 3 7.4 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|296242622|ref|YP_003650109.1| - 0.0064 15.7 2.0 0.43 9.9 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding Cys_rich_CPXG PF14255.1 gi|296242622|ref|YP_003650109.1| - 0.0074 16.0 0.8 1.2 8.9 0.3 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG Lar_restr_allev PF14354.1 gi|296242622|ref|YP_003650109.1| - 0.01 16.1 1.3 0.014 15.6 0.9 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|296242622|ref|YP_003650109.1| - 0.015 15.0 5.8 1.6 8.6 4.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|296242622|ref|YP_003650109.1| - 0.032 14.5 1.1 6.1 7.4 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-ISL3 PF14690.1 gi|296242622|ref|YP_003650109.1| - 0.038 14.0 3.3 2.5 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.1 gi|296242622|ref|YP_003650109.1| - 0.051 13.5 0.3 7.9 6.4 0.1 2.1 2 0 0 2 2 2 0 CpXC protein Prim_Zn_Ribbon PF08273.7 gi|296242622|ref|YP_003650109.1| - 0.085 12.9 2.3 6.7 6.8 0.1 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase TFIIS_C PF01096.13 gi|296242622|ref|YP_003650109.1| - 0.093 12.3 2.0 2.3 7.9 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|296242622|ref|YP_003650109.1| - 0.1 12.5 1.2 4.5 7.3 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-LITAF-like PF10601.4 gi|296242622|ref|YP_003650109.1| - 0.11 12.4 0.7 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain VP_N-CPKC PF11475.3 gi|296242622|ref|YP_003650109.1| - 0.13 11.7 2.5 0.14 11.6 0.1 2.0 2 0 0 2 2 2 0 Virion protein N terminal domain DUF2296 PF10058.4 gi|296242622|ref|YP_003650109.1| - 0.17 11.6 1.1 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_3 PF14369.1 gi|296242622|ref|YP_003650109.1| - 0.31 11.0 4.5 3.2 7.8 0.5 2.2 2 0 0 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|296242622|ref|YP_003650109.1| - 0.36 10.5 0.6 0.36 10.5 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|296242622|ref|YP_003650109.1| - 0.36 10.5 5.6 1.2 8.8 0.5 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.1 gi|296242622|ref|YP_003650109.1| - 0.4 10.2 8.6 0.43 10.1 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|296242622|ref|YP_003650109.1| - 0.63 10.4 10.8 2.3 8.6 1.5 2.3 1 1 1 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.21 gi|296242622|ref|YP_003650109.1| - 0.81 10.1 4.3 8 7.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C4_Topoisom PF01396.14 gi|296242622|ref|YP_003650109.1| - 5.7 6.5 7.3 13 5.3 0.1 2.4 2 1 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger FANCL_C PF11793.3 gi|296242622|ref|YP_003650109.1| - 8.5 6.4 6.2 5.7 6.9 0.1 2.1 1 1 1 2 2 2 0 FANCL C-terminal domain N6_Mtase PF02384.11 gi|296242623|ref|YP_003650110.1| - 3.4e-28 98.6 0.0 9.6e-28 97.1 0.0 1.7 1 1 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|296242623|ref|YP_003650110.1| - 2.7e-17 62.8 0.0 6.9e-17 61.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|296242623|ref|YP_003650110.1| - 7.9e-08 32.6 0.0 4e-07 30.3 0.0 2.2 1 1 0 1 1 1 1 Eco57I restriction-modification methylase UPF0020 PF01170.13 gi|296242623|ref|YP_003650110.1| - 1.8e-07 30.8 0.0 2e-05 24.2 0.0 2.7 3 0 0 3 3 3 1 Putative RNA methylase family UPF0020 HSDR_N PF04313.9 gi|296242623|ref|YP_003650110.1| - 0.016 14.9 0.1 0.037 13.7 0.0 1.6 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) MTS PF05175.9 gi|296242623|ref|YP_003650110.1| - 0.022 14.1 0.0 4.3 6.6 0.0 3.0 3 0 0 3 3 3 0 Methyltransferase small domain CoA_binding_3 PF13727.1 gi|296242623|ref|YP_003650110.1| - 0.032 14.0 0.8 0.13 12.0 0.0 2.4 3 0 0 3 3 3 0 CoA-binding domain Methyltransf_31 PF13847.1 gi|296242623|ref|YP_003650110.1| - 0.11 12.0 0.0 0.26 10.8 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|296242623|ref|YP_003650110.1| - 0.13 11.9 0.0 0.52 10.0 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|296242623|ref|YP_003650110.1| - 0.19 12.3 0.0 1 9.9 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Colicin_V PF02674.11 gi|296242624|ref|YP_003650111.1| - 0.078 12.8 5.8 0.027 14.3 2.4 1.5 1 1 0 1 1 1 0 Colicin V production protein PgaD PF13994.1 gi|296242626|ref|YP_003650113.1| - 0.0052 16.2 0.1 0.0076 15.7 0.0 1.2 1 0 0 1 1 1 1 PgaD-like protein SseC PF04888.7 gi|296242626|ref|YP_003650113.1| - 1 8.6 4.8 1.5 8.0 3.3 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family AAA_3 PF07726.6 gi|296242628|ref|YP_003650115.1| - 1.7e-62 208.8 0.1 2.8e-62 208.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|296242628|ref|YP_003650115.1| - 4.9e-16 58.7 0.0 9e-16 57.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|296242628|ref|YP_003650115.1| - 1.5e-08 33.8 0.0 1.6e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|296242628|ref|YP_003650115.1| - 8.4e-07 29.2 0.1 3.4e-06 27.2 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|296242628|ref|YP_003650115.1| - 9.5e-05 21.5 0.2 0.001 18.1 0.0 2.4 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|296242628|ref|YP_003650115.1| - 0.00012 21.6 0.2 0.00061 19.2 0.1 2.1 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|296242628|ref|YP_003650115.1| - 0.0034 16.5 0.4 1.1 8.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI DUF4129 PF13559.1 gi|296242629|ref|YP_003650116.1| - 3.8e-07 29.9 0.3 9.7e-07 28.6 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Dr_adhesin PF12393.3 gi|296242629|ref|YP_003650116.1| - 0.31 11.1 0.9 0.69 10.0 0.6 1.6 1 0 0 1 1 1 0 Dr family adhesin DUF2244 PF10003.4 gi|296242630|ref|YP_003650117.1| - 5.1 6.4 6.6 0.46 9.8 0.1 2.6 2 1 1 3 3 3 0 Integral membrane protein (DUF2244) SUR7 PF06687.7 gi|296242631|ref|YP_003650118.1| - 0.02 14.4 0.6 0.021 14.4 0.4 1.0 1 0 0 1 1 1 0 SUR7/PalI family DUF423 PF04241.10 gi|296242631|ref|YP_003650118.1| - 0.22 11.4 3.3 0.27 11.2 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF423) DUF4131 PF13567.1 gi|296242631|ref|YP_003650118.1| - 8.6 5.7 6.6 10 5.4 4.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF58 PF01882.13 gi|296242633|ref|YP_003650120.1| - 6.1e-18 64.7 0.0 1.1e-17 63.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA PF00092.23 gi|296242633|ref|YP_003650120.1| - 0.005 16.5 0.1 0.034 13.8 0.0 2.2 1 1 2 3 3 3 1 von Willebrand factor type A domain Alpha-amylase PF00128.19 gi|296242634|ref|YP_003650121.1| - 4.3e-56 190.6 0.0 6.6e-56 190.0 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|296242634|ref|YP_003650121.1| - 0.0038 17.3 0.0 0.0094 16.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) CBM_48 PF02922.13 gi|296242634|ref|YP_003650121.1| - 0.029 14.3 0.2 0.51 10.4 0.0 2.9 3 1 0 3 3 3 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SieB PF14163.1 gi|296242635|ref|YP_003650122.1| - 0.17 11.4 3.9 5.6 6.5 0.2 2.7 2 1 1 3 3 3 0 Superinfection exclusion protein B DUF4191 PF13829.1 gi|296242635|ref|YP_003650122.1| - 0.53 9.3 4.3 0.1 11.6 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) P12 PF12669.2 gi|296242635|ref|YP_003650122.1| - 0.79 9.9 3.1 2.1 8.6 2.1 1.7 1 0 0 1 1 1 0 Virus attachment protein p12 family Nitro_FeMo-Co PF02579.12 gi|296242636|ref|YP_003650123.1| - 7e-06 26.0 0.0 8.6e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Apc4 PF12896.2 gi|296242636|ref|YP_003650123.1| - 0.096 11.9 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 4 Cytochrome_CBB3 PF13442.1 gi|296242637|ref|YP_003650124.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase, cbb3-type, subunit III HTH_45 PF14947.1 gi|296242638|ref|YP_003650125.1| - 3.8e-17 61.8 1.0 8.1e-17 60.8 0.7 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|296242638|ref|YP_003650125.1| - 0.00042 19.6 1.1 0.00093 18.5 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF3116 PF11313.3 gi|296242638|ref|YP_003650125.1| - 0.00046 19.7 0.1 0.0011 18.5 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3116) MarR PF01047.17 gi|296242638|ref|YP_003650125.1| - 0.002 17.7 0.0 0.0058 16.3 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|296242638|ref|YP_003650125.1| - 0.011 15.7 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|296242638|ref|YP_003650125.1| - 0.014 15.7 0.0 0.033 14.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|296242638|ref|YP_003650125.1| - 0.018 14.6 0.0 0.066 12.8 0.0 2.0 3 0 0 3 3 3 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|296242638|ref|YP_003650125.1| - 0.022 14.3 0.1 0.35 10.5 0.0 2.5 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.1 gi|296242638|ref|YP_003650125.1| - 0.062 13.1 0.1 0.08 12.7 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation Mrr_N PF14338.1 gi|296242638|ref|YP_003650125.1| - 0.081 13.0 0.3 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Mrr N-terminal domain FTO_NTD PF12933.2 gi|296242638|ref|YP_003650125.1| - 0.15 11.1 0.3 0.23 10.5 0.2 1.2 1 0 0 1 1 1 0 FTO catalytic domain RWD PF05773.17 gi|296242639|ref|YP_003650126.1| - 0.17 11.7 0.8 0.56 10.1 0.1 1.9 1 1 1 2 2 2 0 RWD domain VCBS PF13517.1 gi|296242640|ref|YP_003650127.1| - 0.00014 22.1 3.3 0.082 13.2 0.0 2.5 2 0 0 2 2 2 2 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|296242640|ref|YP_003650127.1| - 0.00086 18.9 6.4 0.0022 17.6 0.1 2.5 2 0 0 2 2 2 1 FG-GAP repeat EF-hand_5 PF13202.1 gi|296242640|ref|YP_003650127.1| - 1.7 8.1 3.9 16 5.0 0.1 3.0 2 0 0 2 2 2 0 EF hand Peptidase_S24 PF00717.18 gi|296242641|ref|YP_003650128.1| - 1.7e-07 30.7 0.1 3.3e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like RuBisCO_large PF00016.15 gi|296242643|ref|YP_003650130.1| - 1.2e-73 247.7 0.0 1.5e-73 247.3 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|296242643|ref|YP_003650130.1| - 3.9e-32 110.5 0.0 2.4e-31 108.0 0.0 2.0 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain Archease PF01951.11 gi|296242644|ref|YP_003650131.1| - 1.4e-36 125.4 0.0 1.6e-36 125.2 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Peptidase_M54 PF07998.6 gi|296242645|ref|YP_003650132.1| - 9.4e-30 103.8 0.0 1.1e-29 103.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|296242645|ref|YP_003650132.1| - 0.00045 19.9 0.0 0.00047 19.9 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|296242645|ref|YP_003650132.1| - 0.0038 17.7 0.0 0.0072 16.8 0.0 1.6 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M43 PF05572.8 gi|296242645|ref|YP_003650132.1| - 0.016 14.8 0.1 0.03 13.9 0.0 1.5 2 0 0 2 2 2 0 Pregnancy-associated plasma protein-A zf-4CXXC_R1 PF10497.4 gi|296242645|ref|YP_003650132.1| - 0.028 14.5 0.2 0.058 13.5 0.1 1.5 2 0 0 2 2 2 0 Zinc-finger domain of monoamine-oxidase A repressor R1 Reprolysin_2 PF13574.1 gi|296242645|ref|YP_003650132.1| - 0.044 13.8 0.0 0.046 13.7 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|296242645|ref|YP_003650132.1| - 0.1 11.0 0.4 0.14 10.6 0.3 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.4 gi|296242645|ref|YP_003650132.1| - 0.14 11.0 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 NTP_transferase PF00483.18 gi|296242646|ref|YP_003650133.1| - 3.4e-33 114.9 0.0 3.9e-33 114.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|296242646|ref|YP_003650133.1| - 8.8e-12 45.3 0.0 1.3e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|296242646|ref|YP_003650133.1| - 0.0027 17.2 0.0 0.0037 16.8 0.0 1.3 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF59 PF01883.14 gi|296242647|ref|YP_003650134.1| - 0.0039 17.1 0.0 0.0058 16.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF59 DUF2862 PF11061.3 gi|296242647|ref|YP_003650134.1| - 0.12 12.1 0.1 0.39 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2862) NifU PF01106.12 gi|296242647|ref|YP_003650134.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 1 0 1 1 1 0 NifU-like domain DUF3227 PF11537.3 gi|296242648|ref|YP_003650135.1| - 6.8e-06 26.1 0.0 1.6e-05 24.9 0.0 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF3227) KaiC PF06745.8 gi|296242649|ref|YP_003650136.1| - 1.2e-36 126.0 0.0 7.9e-35 120.0 0.0 2.1 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|296242649|ref|YP_003650136.1| - 1.3e-13 50.8 0.0 2.5e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|296242649|ref|YP_003650136.1| - 1.5e-08 33.3 0.0 3.9e-08 32.0 0.0 1.6 2 0 0 2 2 2 1 GvpD gas vesicle protein AAA_24 PF13479.1 gi|296242649|ref|YP_003650136.1| - 0.00055 19.5 0.0 0.0021 17.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|296242649|ref|YP_003650136.1| - 0.0006 19.5 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|296242649|ref|YP_003650136.1| - 0.0012 19.6 0.3 0.0052 17.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|296242649|ref|YP_003650136.1| - 0.0015 18.0 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain Arch_ATPase PF01637.13 gi|296242649|ref|YP_003650136.1| - 0.0016 18.2 0.1 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|296242649|ref|YP_003650136.1| - 0.0017 17.7 0.0 0.0054 16.1 0.0 1.8 2 0 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|296242649|ref|YP_003650136.1| - 0.0018 17.2 0.0 0.004 16.0 0.0 1.6 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|296242649|ref|YP_003650136.1| - 0.0037 16.2 0.0 0.0051 15.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|296242649|ref|YP_003650136.1| - 0.004 17.1 0.0 0.018 15.0 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|296242649|ref|YP_003650136.1| - 0.0059 16.8 0.0 0.02 15.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|296242649|ref|YP_003650136.1| - 0.0086 15.1 0.0 0.021 13.9 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin AAA_18 PF13238.1 gi|296242649|ref|YP_003650136.1| - 0.0097 16.2 0.0 0.021 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|296242649|ref|YP_003650136.1| - 0.011 15.6 0.0 0.03 14.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|296242649|ref|YP_003650136.1| - 0.032 13.9 0.0 0.085 12.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|296242649|ref|YP_003650136.1| - 0.035 13.9 0.0 0.069 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|296242649|ref|YP_003650136.1| - 0.042 14.1 0.0 0.079 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|296242649|ref|YP_003650136.1| - 0.044 13.4 0.1 0.12 12.0 0.0 1.8 2 0 0 2 2 1 0 NACHT domain AAA_22 PF13401.1 gi|296242649|ref|YP_003650136.1| - 0.047 13.8 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|296242649|ref|YP_003650136.1| - 0.064 13.7 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_31 PF13614.1 gi|296242649|ref|YP_003650136.1| - 0.11 12.4 0.1 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|296242649|ref|YP_003650136.1| - 0.16 11.4 0.2 0.53 9.6 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|296242649|ref|YP_003650136.1| - 0.17 11.5 0.0 1 9.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B HTH_5 PF01022.15 gi|296242650|ref|YP_003650137.1| - 5.8e-15 54.6 2.8 3.9e-14 52.0 0.4 2.5 2 1 1 3 3 3 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|296242650|ref|YP_003650137.1| - 8.3e-11 41.5 0.0 2.5e-10 39.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|296242650|ref|YP_003650137.1| - 1.7e-07 30.4 0.1 3.2e-06 26.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|296242650|ref|YP_003650137.1| - 6.7e-06 25.7 0.1 0.00011 21.7 0.0 2.2 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|296242650|ref|YP_003650137.1| - 1.7e-05 24.4 0.1 0.0014 18.2 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|296242650|ref|YP_003650137.1| - 0.00013 21.5 0.1 0.00062 19.3 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|296242650|ref|YP_003650137.1| - 0.0005 19.8 0.1 0.042 13.6 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|296242650|ref|YP_003650137.1| - 0.00059 19.8 0.2 0.0012 18.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|296242650|ref|YP_003650137.1| - 0.00066 19.9 0.3 0.0052 17.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|296242650|ref|YP_003650137.1| - 0.0027 17.5 0.6 0.0069 16.2 0.2 1.9 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF2250 PF10007.4 gi|296242650|ref|YP_003650137.1| - 0.014 15.2 0.1 0.091 12.6 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|296242650|ref|YP_003650137.1| - 0.022 14.2 0.1 0.053 13.0 0.0 1.7 2 0 0 2 2 2 0 TFIIE alpha subunit DUF387 PF04079.11 gi|296242650|ref|YP_003650137.1| - 0.038 13.3 0.1 0.11 11.8 0.0 1.7 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Rio2_N PF09202.6 gi|296242650|ref|YP_003650137.1| - 0.04 13.9 0.1 0.075 13.1 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal Cdc6_C PF09079.6 gi|296242650|ref|YP_003650137.1| - 0.046 13.4 0.1 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 CDC6, C terminal Fer4_6 PF12837.2 gi|296242651|ref|YP_003650138.1| - 6.7e-13 47.9 11.3 2.1e-06 27.3 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|296242651|ref|YP_003650138.1| - 1.2e-12 46.8 15.9 9.8e-08 31.2 1.5 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|296242651|ref|YP_003650138.1| - 8.7e-12 44.6 19.9 6.8e-10 38.5 6.3 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|296242651|ref|YP_003650138.1| - 7e-10 39.0 9.9 8.6e-10 38.7 6.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296242651|ref|YP_003650138.1| - 7.9e-10 38.9 8.8 1.1e-09 38.5 6.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296242651|ref|YP_003650138.1| - 8.4e-10 37.9 12.5 2.6e-06 27.0 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296242651|ref|YP_003650138.1| - 8.3e-06 25.5 10.5 3.7e-05 23.4 7.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|296242651|ref|YP_003650138.1| - 1.2e-05 25.1 12.5 0.0027 17.8 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|296242651|ref|YP_003650138.1| - 3.9e-05 23.9 18.4 0.0012 19.2 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|296242651|ref|YP_003650138.1| - 9.6e-05 22.7 9.9 0.013 15.8 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296242651|ref|YP_003650138.1| - 0.00018 22.1 10.7 0.022 15.4 1.5 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|296242651|ref|YP_003650138.1| - 0.00038 20.4 12.7 0.0041 17.1 8.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296242651|ref|YP_003650138.1| - 0.0011 19.4 8.7 0.015 15.8 6.0 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|296242651|ref|YP_003650138.1| - 0.0063 16.8 10.0 0.14 12.5 6.9 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|296242651|ref|YP_003650138.1| - 0.017 15.4 11.4 0.33 11.3 0.9 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|296242651|ref|YP_003650138.1| - 0.026 14.3 3.6 0.048 13.5 2.5 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF3079 PF11278.3 gi|296242651|ref|YP_003650138.1| - 0.12 11.9 0.4 0.12 11.9 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3079) Metallophos_2 PF12850.2 gi|296242653|ref|YP_003650140.1| - 4.2e-26 91.6 0.0 6.3e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|296242653|ref|YP_003650140.1| - 1.3e-12 47.5 2.4 3.9e-12 46.0 1.7 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.6 gi|296242653|ref|YP_003650140.1| - 0.019 13.0 0.2 0.2 9.6 0.0 2.0 1 1 1 2 2 2 0 Firmicute fructose-1,6-bisphosphatase DEAD PF00270.24 gi|296242654|ref|YP_003650141.1| - 9.6e-20 70.7 0.2 8.2e-19 67.7 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|296242654|ref|YP_003650141.1| - 7.2e-11 41.7 0.4 1.9e-10 40.4 0.1 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain Flavi_DEAD PF07652.9 gi|296242654|ref|YP_003650141.1| - 0.0024 17.6 0.0 2.1 8.1 0.0 2.4 2 0 0 2 2 2 2 Flavivirus DEAD domain ResIII PF04851.10 gi|296242654|ref|YP_003650141.1| - 0.0024 17.7 0.0 0.0058 16.4 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|296242654|ref|YP_003650141.1| - 0.21 10.8 0.3 1.3 8.2 0.0 2.2 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain ADH_N PF08240.7 gi|296242655|ref|YP_003650142.1| - 5.4e-35 119.4 1.0 1e-34 118.5 0.7 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|296242655|ref|YP_003650142.1| - 6.5e-07 30.2 0.2 1.3e-06 29.3 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|296242655|ref|YP_003650142.1| - 6.8e-07 28.9 0.0 1.8e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase mono-CXXC PF15626.1 gi|296242655|ref|YP_003650142.1| - 7.3 6.6 6.0 5.1 7.1 1.0 2.3 2 0 0 2 2 2 0 single CXXC unit SfsA PF03749.8 gi|296242657|ref|YP_003650144.1| - 1.4e-45 155.4 0.0 1.8e-45 155.0 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein dUTPase PF00692.14 gi|296242658|ref|YP_003650145.1| - 7.7e-13 48.0 0.0 1.1e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 dUTPase Thy1 PF02511.10 gi|296242659|ref|YP_003650146.1| - 1.2e-56 191.1 0.3 1.5e-56 190.7 0.2 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein PA28_alpha PF02251.13 gi|296242659|ref|YP_003650146.1| - 0.064 13.4 0.2 0.28 11.3 0.1 2.0 2 0 0 2 2 2 0 Proteasome activator pa28 alpha subunit PspC PF04024.7 gi|296242660|ref|YP_003650147.1| - 2e-24 84.8 0.7 2e-24 84.8 0.5 2.4 2 1 0 2 2 2 1 PspC domain Colicin_V PF02674.11 gi|296242660|ref|YP_003650147.1| - 0.0039 17.0 9.2 0.012 15.4 6.6 1.8 1 1 0 1 1 1 1 Colicin V production protein PLDc_N PF13396.1 gi|296242660|ref|YP_003650147.1| - 0.0039 16.8 2.9 0.0039 16.8 2.0 3.2 3 1 1 4 4 4 1 Phospholipase_D-nuclease N-terminal Cytochrom_B_N PF00033.14 gi|296242660|ref|YP_003650147.1| - 0.025 13.9 1.5 0.2 10.9 0.1 2.0 2 0 0 2 2 2 0 Cytochrome b(N-terminal)/b6/petB DUF1632 PF07857.7 gi|296242660|ref|YP_003650147.1| - 0.054 12.7 2.5 1.5 7.9 0.4 2.3 1 1 1 2 2 2 0 CEO family (DUF1632) SCIMP PF15050.1 gi|296242660|ref|YP_003650147.1| - 1.3 8.9 0.0 1.3 8.9 0.0 2.4 2 1 1 3 3 3 0 SCIMP protein DUF973 PF06157.6 gi|296242660|ref|YP_003650147.1| - 6.7 5.5 12.6 0.25 10.2 2.5 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF973) EI24 PF07264.6 gi|296242660|ref|YP_003650147.1| - 7.7 5.8 8.9 0.57 9.5 1.1 2.0 2 0 0 2 2 2 0 Etoposide-induced protein 2.4 (EI24) Radical_SAM PF04055.16 gi|296242661|ref|YP_003650148.1| - 7e-18 65.3 0.0 8.9e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|296242661|ref|YP_003650148.1| - 6.7e-10 39.2 0.1 1.1e-09 38.5 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|296242661|ref|YP_003650148.1| - 1.3e-09 38.1 0.0 2.1e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain NRDD PF13597.1 gi|296242662|ref|YP_003650149.1| - 2.5e-169 563.8 0.0 2.8e-169 563.6 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.2 gi|296242662|ref|YP_003650149.1| - 0.064 13.0 0.9 0.12 12.1 0.6 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|296242662|ref|YP_003650149.1| - 0.091 12.4 0.1 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2523 PF10734.4 gi|296242662|ref|YP_003650149.1| - 0.16 12.2 0.0 0.37 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2523) zf-ribbon_3 PF13248.1 gi|296242662|ref|YP_003650149.1| - 0.23 10.7 6.6 0.46 9.7 4.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain EMG1 PF03587.9 gi|296242663|ref|YP_003650150.1| - 1.2e-53 181.4 0.0 1.3e-53 181.2 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Rpr2 PF04032.11 gi|296242664|ref|YP_003650151.1| - 7.4e-20 70.6 0.1 9e-20 70.3 0.1 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Fis1_TPR_C PF14853.1 gi|296242664|ref|YP_003650151.1| - 0.014 15.2 0.2 0.025 14.4 0.1 1.3 1 0 0 1 1 1 0 Fis1 C-terminal tetratricopeptide repeat DUF164 PF02591.10 gi|296242664|ref|YP_003650151.1| - 0.056 13.2 0.4 0.12 12.2 0.3 1.5 1 0 0 1 1 1 0 Putative zinc ribbon domain CRS1_YhbY PF01985.16 gi|296242665|ref|YP_003650152.1| - 2.5e-17 62.6 1.3 2.9e-17 62.4 0.9 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain TauD PF02668.11 gi|296242665|ref|YP_003650152.1| - 0.038 13.6 0.0 0.043 13.4 0.0 1.1 1 0 0 1 1 1 0 Taurine catabolism dioxygenase TauD, TfdA family U3_snoRNA_assoc PF08297.6 gi|296242665|ref|YP_003650152.1| - 2.7 8.2 5.6 12 6.2 1.2 2.1 1 1 1 2 2 2 0 U3 snoRNA associated Ribosomal_S19e PF01090.14 gi|296242666|ref|YP_003650153.1| - 3.3e-52 175.6 0.0 3.9e-52 175.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e HTH_12 PF08461.5 gi|296242666|ref|YP_003650153.1| - 0.00012 21.6 0.5 0.00071 19.2 0.4 2.1 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|296242666|ref|YP_003650153.1| - 0.0094 15.7 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix RuvB_C PF05491.8 gi|296242666|ref|YP_003650153.1| - 0.013 15.1 0.2 0.028 14.0 0.1 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus TrmB PF01978.14 gi|296242666|ref|YP_003650153.1| - 0.032 13.9 0.1 0.1 12.3 0.0 1.9 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|296242666|ref|YP_003650153.1| - 0.072 12.9 0.7 0.17 11.7 0.2 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|296242666|ref|YP_003650153.1| - 0.072 13.2 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_IclR PF09339.5 gi|296242666|ref|YP_003650153.1| - 0.076 12.6 0.0 7.5 6.2 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF2250 PF10007.4 gi|296242666|ref|YP_003650153.1| - 0.12 12.3 0.0 0.38 10.7 0.0 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) dsDNA_bind PF01984.15 gi|296242667|ref|YP_003650154.1| - 1.1e-27 96.0 10.0 1.6e-27 95.6 7.0 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Radial_spoke_3 PF06098.6 gi|296242667|ref|YP_003650154.1| - 0.0067 15.4 6.0 0.008 15.2 4.1 1.0 1 0 0 1 1 1 1 Radial spoke protein 3 APP_E2 PF12925.2 gi|296242667|ref|YP_003650154.1| - 0.011 15.2 1.9 0.016 14.7 1.3 1.3 1 0 0 1 1 1 0 E2 domain of amyloid precursor protein DUF4376 PF14301.1 gi|296242667|ref|YP_003650154.1| - 0.031 14.3 0.3 0.036 14.1 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4376) PurS PF02700.9 gi|296242667|ref|YP_003650154.1| - 0.034 14.0 0.3 0.06 13.3 0.2 1.4 1 0 0 1 1 1 0 Phosphoribosylformylglycinamidine (FGAM) synthase RICH PF05062.7 gi|296242667|ref|YP_003650154.1| - 0.064 13.3 1.6 3.4 7.8 0.0 2.4 2 1 0 2 2 2 0 RICH domain CCDC142 PF14923.1 gi|296242667|ref|YP_003650154.1| - 0.11 10.8 0.0 0.14 10.4 0.0 1.1 1 0 0 1 1 1 0 Coiled-coil protein 142 CagY_M PF07337.6 gi|296242667|ref|YP_003650154.1| - 0.15 11.6 0.4 1.3 8.5 0.1 2.4 2 0 0 2 2 2 0 DC-EC Repeat TMEM247 PF15444.1 gi|296242667|ref|YP_003650154.1| - 0.62 9.8 3.1 0.77 9.5 2.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 247 Ribosomal_L39 PF00832.15 gi|296242668|ref|YP_003650155.1| - 2.1e-16 59.0 10.1 2.5e-16 58.8 7.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ala_racemase_N PF01168.15 gi|296242668|ref|YP_003650155.1| - 0.0064 16.0 0.0 0.0066 16.0 0.0 1.1 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain Ribosomal_L31e PF01198.14 gi|296242669|ref|YP_003650156.1| - 2.7e-18 65.3 3.8 3.2e-18 65.1 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|296242670|ref|YP_003650157.1| - 2.5e-61 206.2 2.3 3e-61 206.0 1.6 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18ae PF01775.12 gi|296242671|ref|YP_003650158.1| - 1e-12 48.0 0.4 4.2e-12 46.0 0.2 1.9 1 1 1 2 2 2 1 Ribosomal L18ae/LX protein domain RNA_pol_L PF01193.19 gi|296242671|ref|YP_003650158.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Prefoldin PF02996.12 gi|296242672|ref|YP_003650159.1| - 3.5e-15 55.7 0.1 4.5e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|296242672|ref|YP_003650159.1| - 1.7e-06 27.7 0.1 0.016 14.9 0.0 2.1 2 0 0 2 2 2 2 Prefoldin subunit DUF904 PF06005.7 gi|296242672|ref|YP_003650159.1| - 0.00067 19.9 0.8 0.0057 16.9 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF904) EzrA PF06160.7 gi|296242672|ref|YP_003650159.1| - 0.014 13.6 1.0 0.016 13.4 0.1 1.4 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Vps51 PF08700.6 gi|296242672|ref|YP_003650159.1| - 0.048 13.5 2.4 0.27 11.1 0.1 2.2 2 0 0 2 2 2 0 Vps51/Vps67 Fib_alpha PF08702.5 gi|296242672|ref|YP_003650159.1| - 0.058 13.5 2.1 0.56 10.3 0.1 2.0 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Nup54 PF13874.1 gi|296242672|ref|YP_003650159.1| - 0.061 12.9 0.9 5.2 6.7 0.1 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 IncA PF04156.9 gi|296242672|ref|YP_003650159.1| - 0.12 11.9 1.8 6.3 6.3 1.3 2.1 1 1 0 1 1 1 0 IncA protein FliJ PF02050.11 gi|296242672|ref|YP_003650159.1| - 0.12 12.3 2.8 1.2 9.2 0.7 2.1 2 0 0 2 2 2 0 Flagellar FliJ protein Lebercilin PF15619.1 gi|296242672|ref|YP_003650159.1| - 0.14 11.5 2.1 0.35 10.2 0.3 1.9 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF972 PF06156.8 gi|296242672|ref|YP_003650159.1| - 0.15 12.3 0.6 4 7.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF972) TMF_DNA_bd PF12329.3 gi|296242672|ref|YP_003650159.1| - 1.5 8.7 3.9 2.8 7.7 0.4 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding SRP54 PF00448.17 gi|296242673|ref|YP_003650160.1| - 1e-70 237.1 0.0 1.6e-70 236.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|296242673|ref|YP_003650160.1| - 4.1e-09 36.3 4.9 7.6e-09 35.5 3.4 1.5 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|296242673|ref|YP_003650160.1| - 2.9e-06 26.8 0.0 5.3e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|296242673|ref|YP_003650160.1| - 6.1e-05 22.5 2.4 0.001 18.4 1.7 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArgK PF03308.11 gi|296242673|ref|YP_003650160.1| - 7.1e-05 21.7 2.0 0.00016 20.5 0.3 2.2 2 1 0 2 2 2 1 ArgK protein G3P_antiterm PF04309.7 gi|296242673|ref|YP_003650160.1| - 0.00028 19.9 0.6 0.078 12.0 0.1 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator AAA_31 PF13614.1 gi|296242673|ref|YP_003650160.1| - 0.0014 18.6 0.4 5 7.0 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_30 PF13604.1 gi|296242673|ref|YP_003650160.1| - 0.0023 17.5 0.1 0.0043 16.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|296242673|ref|YP_003650160.1| - 0.0031 17.2 0.2 0.0093 15.6 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|296242673|ref|YP_003650160.1| - 0.0049 16.6 0.3 0.13 11.9 0.2 2.6 1 1 0 1 1 1 1 NTPase AAA_19 PF13245.1 gi|296242673|ref|YP_003650160.1| - 0.012 15.3 0.1 0.035 13.8 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain ArsA_ATPase PF02374.10 gi|296242673|ref|YP_003650160.1| - 0.026 13.5 0.3 0.14 11.2 0.1 2.1 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_16 PF13191.1 gi|296242673|ref|YP_003650160.1| - 0.034 14.1 0.3 0.089 12.7 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|296242673|ref|YP_003650160.1| - 0.04 13.4 0.1 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain Thymidylate_kin PF02223.12 gi|296242673|ref|YP_003650160.1| - 0.045 13.1 0.1 0.52 9.6 0.0 2.5 3 0 0 3 3 3 0 Thymidylate kinase AAA_24 PF13479.1 gi|296242673|ref|YP_003650160.1| - 0.098 12.2 0.3 0.28 10.7 0.2 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|296242673|ref|YP_003650160.1| - 0.12 11.9 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|296242673|ref|YP_003650160.1| - 0.13 12.1 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3335 PF11814.3 gi|296242673|ref|YP_003650160.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Peptidase_C39 like family G-alpha PF00503.15 gi|296242673|ref|YP_003650160.1| - 0.17 10.5 0.0 0.27 9.8 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit AAA PF00004.24 gi|296242673|ref|YP_003650160.1| - 0.68 10.1 4.1 0.6 10.3 0.1 2.5 2 2 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Spt5-NGN PF03439.8 gi|296242675|ref|YP_003650162.1| - 9.4e-18 63.7 0.1 1.8e-17 62.8 0.1 1.5 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|296242675|ref|YP_003650162.1| - 3.9e-07 29.5 0.4 8.8e-07 28.4 0.3 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L11_N PF03946.9 gi|296242676|ref|YP_003650163.1| - 3.6e-24 83.9 0.6 7.1e-24 83.0 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|296242676|ref|YP_003650163.1| - 1.2e-22 79.7 3.2 2e-22 79.0 2.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain DUF2196 PF09962.4 gi|296242676|ref|YP_003650163.1| - 0.98 9.2 3.1 0.73 9.6 0.4 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2196) Ribosomal_L1 PF00687.16 gi|296242677|ref|YP_003650164.1| - 2.4e-38 131.7 0.0 2.6e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|296242678|ref|YP_003650165.1| - 7.5e-23 80.3 0.0 1.7e-22 79.1 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|296242678|ref|YP_003650165.1| - 8.1 6.9 15.6 45 4.5 10.8 2.5 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_60s PF00428.14 gi|296242679|ref|YP_003650166.1| - 3.5e-15 56.1 13.2 4.1e-15 55.9 9.2 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|296242679|ref|YP_003650166.1| - 0.00073 19.3 6.4 0.24 11.3 2.4 2.1 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain Ribonuc_L-PSP PF01042.16 gi|296242679|ref|YP_003650166.1| - 0.0032 17.2 0.1 0.0042 16.8 0.1 1.2 1 0 0 1 1 1 1 Endoribonuclease L-PSP TFIID_30kDa PF03540.8 gi|296242679|ref|YP_003650166.1| - 0.056 13.2 0.1 0.12 12.2 0.1 1.5 1 1 1 2 2 2 0 Transcription initiation factor TFIID 23-30kDa subunit FAM91_C PF14648.1 gi|296242679|ref|YP_003650166.1| - 0.14 10.9 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 FAM91 C-terminus tRNA-synt_2c PF01411.14 gi|296242680|ref|YP_003650167.1| - 1.8e-88 297.2 0.0 2.1e-86 290.4 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|296242680|ref|YP_003650167.1| - 1.9e-11 43.6 0.0 3.9e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.10 gi|296242680|ref|YP_003650167.1| - 0.0013 17.8 0.1 0.0025 16.9 0.1 1.4 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Transglut_core PF01841.14 gi|296242681|ref|YP_003650168.1| - 1.1e-06 28.7 0.0 1.8e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.7 gi|296242681|ref|YP_003650168.1| - 0.00019 20.7 0.0 0.00057 19.1 0.0 1.6 1 1 0 1 1 1 1 Transglutaminase-like domain EMP24_GP25L PF01105.19 gi|296242681|ref|YP_003650168.1| - 0.01 15.5 0.1 0.025 14.2 0.0 1.6 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Transp_cyt_pur PF02133.10 gi|296242682|ref|YP_003650169.1| - 5.3e-40 137.2 39.6 6.2e-40 137.0 27.5 1.0 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin SPC25 PF06703.6 gi|296242683|ref|YP_003650170.1| - 0.76 9.3 3.8 2.4 7.7 0.1 3.0 1 1 1 2 2 2 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Glyco_trans_1_3 PF13528.1 gi|296242685|ref|YP_003650172.1| - 5.7e-10 38.8 0.0 7.8e-09 35.1 0.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase family 1 Glyco_tran_28_C PF04101.11 gi|296242685|ref|YP_003650172.1| - 2.1e-08 33.9 0.0 4.4e-08 32.9 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_4_4 PF13579.1 gi|296242685|ref|YP_003650172.1| - 9.8e-08 32.3 0.5 9.8e-08 32.3 0.4 2.2 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|296242685|ref|YP_003650172.1| - 2.2e-05 24.2 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 YjeF_N PF03853.10 gi|296242685|ref|YP_003650172.1| - 0.0044 16.6 0.1 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 YjeF-related protein N-terminus Glyco_transf_28 PF03033.15 gi|296242685|ref|YP_003650172.1| - 0.012 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Alg14 PF08660.6 gi|296242685|ref|YP_003650172.1| - 0.018 15.0 0.0 0.063 13.2 0.0 1.8 2 0 0 2 2 2 0 Oligosaccharide biosynthesis protein Alg14 like Glyco_trans_1_4 PF13692.1 gi|296242685|ref|YP_003650172.1| - 0.065 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 HTH_23 PF13384.1 gi|296242686|ref|YP_003650173.1| - 0.0018 17.8 0.0 0.0042 16.7 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_24 PF13412.1 gi|296242686|ref|YP_003650173.1| - 0.016 14.5 0.0 0.036 13.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|296242686|ref|YP_003650173.1| - 0.053 13.3 0.1 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_38 PF13936.1 gi|296242686|ref|YP_003650173.1| - 0.092 12.3 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain SBP_bac_5 PF00496.17 gi|296242687|ref|YP_003650174.1| - 4.5e-87 292.3 1.8 5.4e-87 292.0 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|296242688|ref|YP_003650175.1| - 2.5e-37 128.2 11.2 2.5e-37 128.2 7.8 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|296242689|ref|YP_003650176.1| - 1.3e-22 80.2 11.2 1.3e-22 80.2 7.7 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|296242689|ref|YP_003650176.1| - 8.4e-05 21.8 0.4 8.4e-05 21.8 0.3 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C CreD PF06123.7 gi|296242689|ref|YP_003650176.1| - 0.11 11.0 0.8 0.2 10.1 0.6 1.4 1 0 0 1 1 1 0 Inner membrane protein CreD ABC_tran PF00005.22 gi|296242690|ref|YP_003650177.1| - 9.3e-28 97.2 0.0 1.3e-27 96.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|296242690|ref|YP_003650177.1| - 1.3e-18 67.0 0.6 2.9e-18 65.9 0.4 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|296242690|ref|YP_003650177.1| - 1.5e-10 41.5 0.7 1.5e-08 34.9 0.0 2.1 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|296242690|ref|YP_003650177.1| - 2.4e-05 23.6 1.4 0.0021 17.3 0.0 2.3 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|296242690|ref|YP_003650177.1| - 0.0014 18.1 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|296242690|ref|YP_003650177.1| - 0.0021 17.1 0.0 0.013 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|296242690|ref|YP_003650177.1| - 0.0056 16.9 0.1 0.041 14.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|296242690|ref|YP_003650177.1| - 0.014 14.8 1.0 2.5 7.4 0.1 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|296242690|ref|YP_003650177.1| - 0.02 14.3 0.3 0.22 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|296242690|ref|YP_003650177.1| - 0.021 14.0 0.1 0.3 10.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|296242690|ref|YP_003650177.1| - 0.06 13.2 0.0 0.16 11.9 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|296242690|ref|YP_003650177.1| - 0.12 12.5 1.9 0.68 10.0 1.3 2.1 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|296242690|ref|YP_003650177.1| - 0.13 11.9 0.1 0.29 10.8 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_ATPase PF09818.4 gi|296242690|ref|YP_003650177.1| - 0.2 10.2 1.5 0.66 8.4 0.4 2.1 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|296242690|ref|YP_003650177.1| - 0.21 11.5 0.5 0.39 10.6 0.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|296242691|ref|YP_003650178.1| - 4.5e-30 104.7 0.0 6.4e-30 104.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|296242691|ref|YP_003650178.1| - 1.2e-17 63.9 0.1 2e-17 63.2 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|296242691|ref|YP_003650178.1| - 1.7e-08 34.8 0.9 1.5e-05 25.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|296242691|ref|YP_003650178.1| - 0.011 15.2 0.3 0.023 14.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|296242691|ref|YP_003650178.1| - 0.039 13.1 0.8 0.97 8.6 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|296242691|ref|YP_003650178.1| - 0.04 13.6 0.1 0.24 11.1 0.1 2.0 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|296242691|ref|YP_003650178.1| - 0.093 12.7 0.7 0.21 11.5 0.5 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|296242691|ref|YP_003650178.1| - 0.11 12.8 0.2 0.24 11.6 0.1 1.7 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|296242691|ref|YP_003650178.1| - 0.11 11.5 0.3 7.9 5.3 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|296242691|ref|YP_003650178.1| - 0.14 12.3 0.0 0.51 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|296242691|ref|YP_003650178.1| - 0.41 9.0 1.3 2.1 6.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF2204 PF09970.4 gi|296242694|ref|YP_003650181.1| - 0.04 13.3 0.0 0.071 12.5 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Phage_FRD3 PF05798.6 gi|296242694|ref|YP_003650181.1| - 0.075 13.3 0.1 0.34 11.2 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage FRD3 protein Syntaxin PF00804.20 gi|296242695|ref|YP_003650182.1| - 0.00045 20.3 25.6 0.0013 18.8 1.4 4.0 1 1 3 4 4 4 1 Syntaxin Apolipoprotein PF01442.13 gi|296242695|ref|YP_003650182.1| - 0.00052 19.5 24.8 0.052 13.0 6.5 3.1 2 1 1 3 3 3 2 Apolipoprotein A1/A4/E domain WXG100 PF06013.7 gi|296242695|ref|YP_003650182.1| - 0.0012 18.7 1.5 1.2 9.2 0.0 3.6 3 0 0 3 3 3 1 Proteins of 100 residues with WXG NPV_P10 PF05531.7 gi|296242695|ref|YP_003650182.1| - 0.0016 18.6 12.5 0.036 14.3 1.1 4.3 1 1 3 4 4 4 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.7 gi|296242695|ref|YP_003650182.1| - 0.0042 16.9 4.2 0.85 9.4 1.1 3.0 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|296242695|ref|YP_003650182.1| - 0.0065 14.9 29.5 0.023 13.1 20.6 1.7 1 1 1 2 2 2 2 AAA domain Corona_S2 PF01601.11 gi|296242695|ref|YP_003650182.1| - 0.02 12.9 0.8 0.19 9.7 0.3 2.2 1 1 0 2 2 2 0 Coronavirus S2 glycoprotein Nup54 PF13874.1 gi|296242695|ref|YP_003650182.1| - 0.024 14.2 19.0 0.042 13.5 3.9 2.8 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 IncA PF04156.9 gi|296242695|ref|YP_003650182.1| - 0.11 12.1 29.4 1.4 8.5 9.3 2.8 1 1 1 2 2 2 0 IncA protein DUF2680 PF10925.3 gi|296242695|ref|YP_003650182.1| - 0.13 12.1 5.5 5 7.0 0.0 4.7 5 0 0 5 5 3 0 Protein of unknown function (DUF2680) Z1 PF10593.4 gi|296242695|ref|YP_003650182.1| - 0.15 11.2 14.6 0.06 12.5 1.6 2.4 1 1 0 2 2 2 0 Z1 domain TPR_MLP1_2 PF07926.7 gi|296242695|ref|YP_003650182.1| - 0.16 11.6 29.9 0.21 11.3 14.3 3.4 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Prominin PF05478.6 gi|296242695|ref|YP_003650182.1| - 0.19 9.2 10.5 0.35 8.3 7.3 1.4 1 0 0 1 1 1 0 Prominin Sec23_helical PF04815.10 gi|296242695|ref|YP_003650182.1| - 0.25 10.8 1.5 13 5.3 0.1 2.8 2 0 0 2 2 2 0 Sec23/Sec24 helical domain DUF3391 PF11871.3 gi|296242695|ref|YP_003650182.1| - 0.48 10.6 14.9 7.8 6.7 1.2 4.0 2 2 2 4 4 4 0 Domain of unknown function (DUF3391) TroA PF01297.12 gi|296242695|ref|YP_003650182.1| - 0.59 9.3 9.4 0.67 9.1 0.1 2.9 2 1 1 3 3 3 0 Periplasmic solute binding protein family YlqD PF11068.3 gi|296242695|ref|YP_003650182.1| - 0.71 9.9 20.2 0.1 12.6 4.4 2.9 1 1 0 2 2 2 0 YlqD protein DUF3584 PF12128.3 gi|296242695|ref|YP_003650182.1| - 1.1 6.5 26.8 4.7 4.4 18.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) ApoO PF09769.4 gi|296242695|ref|YP_003650182.1| - 1.5 8.5 5.7 4.2 7.0 0.5 3.0 2 1 0 3 3 3 0 Apolipoprotein O DUF1664 PF07889.7 gi|296242695|ref|YP_003650182.1| - 2 8.1 22.3 6.8 6.5 0.3 4.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) ApoLp-III PF07464.6 gi|296242695|ref|YP_003650182.1| - 2.2 8.2 24.7 0.58 10.1 5.8 2.7 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) PilJ PF13675.1 gi|296242695|ref|YP_003650182.1| - 2.5 8.4 5.0 16 5.8 0.6 3.3 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term FliJ PF02050.11 gi|296242695|ref|YP_003650182.1| - 3 7.8 25.6 0.64 10.0 2.4 3.9 1 1 1 4 4 4 0 Flagellar FliJ protein CDC37_N PF03234.9 gi|296242695|ref|YP_003650182.1| - 4 7.7 25.6 1.2 9.3 7.7 2.6 1 1 0 2 2 2 0 Cdc37 N terminal kinase binding KfrA_N PF11740.3 gi|296242695|ref|YP_003650182.1| - 4.3 7.8 13.0 0.58 10.6 3.1 3.0 2 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term Prefoldin_3 PF13758.1 gi|296242695|ref|YP_003650182.1| - 4.9 6.9 25.5 0.031 14.0 5.1 3.5 2 1 1 3 3 3 0 Prefoldin subunit DUF948 PF06103.6 gi|296242695|ref|YP_003650182.1| - 5.7 6.8 9.4 29 4.6 0.2 3.8 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.5 gi|296242695|ref|YP_003650182.1| - 5.7 7.0 23.1 3 7.9 5.6 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF745 PF05335.8 gi|296242695|ref|YP_003650182.1| - 5.8 6.3 16.0 2 7.9 4.7 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF745) RRF PF01765.14 gi|296242695|ref|YP_003650182.1| - 5.8 6.3 26.2 0.23 10.8 3.7 2.6 2 1 0 2 2 2 0 Ribosome recycling factor DUF2203 PF09969.4 gi|296242695|ref|YP_003650182.1| - 9.4 6.4 17.4 52 4.0 4.6 3.9 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) Na_sulph_symp PF00939.14 gi|296242696|ref|YP_003650183.1| - 3.7e-70 237.1 40.2 4.7e-70 236.7 27.9 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|296242696|ref|YP_003650183.1| - 2.1e-19 69.3 30.0 2.1e-19 69.3 20.8 2.0 1 1 1 2 2 2 2 Citrate transporter TrkH PF02386.11 gi|296242697|ref|YP_003650184.1| - 1.7e-46 158.4 30.0 4.8e-45 153.6 14.3 2.2 2 0 0 2 2 2 2 Cation transport protein TrkA_N PF02254.13 gi|296242698|ref|YP_003650185.1| - 1.8e-14 53.7 1.2 2.7e-14 53.1 0.8 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|296242698|ref|YP_003650185.1| - 6.7e-06 25.6 0.3 2e-05 24.0 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|296242698|ref|YP_003650185.1| - 7.1e-06 26.2 0.2 1.1e-05 25.5 0.2 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|296242698|ref|YP_003650185.1| - 0.0009 19.6 0.2 0.0023 18.3 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CPSase_L_chain PF00289.17 gi|296242698|ref|YP_003650185.1| - 0.042 13.9 0.3 0.2 11.7 0.2 2.0 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Thg1 PF04446.7 gi|296242698|ref|YP_003650185.1| - 0.12 11.9 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 tRNAHis guanylyltransferase MS_channel PF00924.13 gi|296242699|ref|YP_003650186.1| - 0.0013 18.1 1.5 0.0013 18.1 1.1 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF1673 PF07895.6 gi|296242699|ref|YP_003650186.1| - 1.6 8.2 6.1 2.5 7.5 4.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Radical_SAM PF04055.16 gi|296242700|ref|YP_003650187.1| - 4.4e-24 85.5 0.3 4.8e-23 82.1 0.0 2.4 2 1 1 3 3 3 1 Radical SAM superfamily UPF0004 PF00919.15 gi|296242700|ref|YP_003650187.1| - 1.2e-23 82.7 0.0 2.2e-23 81.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|296242700|ref|YP_003650187.1| - 0.00028 20.5 0.0 0.00091 18.9 0.0 1.9 2 0 0 2 2 2 1 TRAM domain Snf7 PF03357.16 gi|296242700|ref|YP_003650187.1| - 0.035 13.4 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 Snf7 eIF-5_eIF-2B PF01873.12 gi|296242701|ref|YP_003650188.1| - 6.3e-33 113.0 0.0 7.5e-33 112.8 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Elf1 PF05129.8 gi|296242701|ref|YP_003650188.1| - 0.002 17.7 1.1 0.0033 17.0 0.8 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|296242701|ref|YP_003650188.1| - 0.0032 16.6 1.0 0.86 8.8 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|296242701|ref|YP_003650188.1| - 0.0073 16.0 0.4 4.8 7.0 0.0 2.4 2 0 0 2 2 2 2 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|296242701|ref|YP_003650188.1| - 0.0094 15.5 0.8 0.017 14.7 0.5 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|296242701|ref|YP_003650188.1| - 0.015 15.2 1.1 0.79 9.7 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.1 gi|296242701|ref|YP_003650188.1| - 0.025 13.7 0.9 0.041 13.0 0.6 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger IBR PF01485.16 gi|296242701|ref|YP_003650188.1| - 0.028 14.3 0.3 0.045 13.6 0.2 1.3 1 0 0 1 1 1 0 IBR domain KorB PF08535.5 gi|296242701|ref|YP_003650188.1| - 0.029 14.4 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 KorB domain zf-NADH-PPase PF09297.6 gi|296242701|ref|YP_003650188.1| - 0.035 13.6 2.0 1.9 8.0 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF164 PF02591.10 gi|296242701|ref|YP_003650188.1| - 0.059 13.1 0.2 3 7.7 0.0 2.4 2 0 0 2 2 2 0 Putative zinc ribbon domain Lar_restr_allev PF14354.1 gi|296242701|ref|YP_003650188.1| - 0.062 13.6 2.1 0.22 11.8 1.5 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar DRP PF06044.7 gi|296242701|ref|YP_003650188.1| - 0.1 11.5 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Dam-replacing family DUF2066 PF09839.4 gi|296242701|ref|YP_003650188.1| - 0.15 11.1 0.0 0.21 10.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2066) DUF3797 PF12677.2 gi|296242701|ref|YP_003650188.1| - 0.22 11.1 3.3 0.46 10.1 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn-ribbon_8 PF09723.5 gi|296242701|ref|YP_003650188.1| - 0.29 11.1 3.2 1.6 8.7 2.2 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Ribosomal_S27e PF01667.12 gi|296242701|ref|YP_003650188.1| - 0.3 10.6 2.5 1.1 8.8 1.7 1.8 1 1 0 1 1 1 0 Ribosomal protein S27 CpXC PF14353.1 gi|296242701|ref|YP_003650188.1| - 0.62 10.0 2.6 2.3 8.1 0.1 2.3 1 1 1 2 2 2 0 CpXC protein Prok-RING_1 PF14446.1 gi|296242701|ref|YP_003650188.1| - 0.79 9.5 4.9 1.5 8.6 0.4 2.2 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|296242701|ref|YP_003650188.1| - 1.1 8.9 4.0 12 5.6 0.3 2.6 2 1 0 3 3 3 0 zinc-ribbon domain zf-CCHC_6 PF15288.1 gi|296242701|ref|YP_003650188.1| - 1.2 8.8 5.0 5.1 6.8 0.2 2.4 2 0 0 2 2 2 0 Zinc knuckle zinc_ribbon_2 PF13240.1 gi|296242701|ref|YP_003650188.1| - 1.5 8.3 4.5 39 3.8 3.2 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|296242701|ref|YP_003650188.1| - 2 8.1 4.5 14 5.5 0.2 2.6 2 1 0 2 2 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|296242701|ref|YP_003650188.1| - 2.1 7.9 5.1 1.8 8.1 0.4 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.1 gi|296242701|ref|YP_003650188.1| - 3.1 7.5 5.1 12 5.6 0.5 2.3 2 0 0 2 2 2 0 Nudix N-terminal Auto_anti-p27 PF06677.7 gi|296242701|ref|YP_003650188.1| - 5.6 6.8 6.0 21 4.9 2.1 2.7 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF424 PF04242.8 gi|296242702|ref|YP_003650189.1| - 1.7e-19 69.6 0.2 1.9e-19 69.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) NTP_transf_3 PF12804.2 gi|296242702|ref|YP_003650189.1| - 0.036 14.1 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain NMD3 PF04981.8 gi|296242703|ref|YP_003650190.1| - 8.9e-39 132.9 0.1 1.1e-38 132.6 0.1 1.1 1 0 0 1 1 1 1 NMD3 family DUF35_N PF12172.3 gi|296242703|ref|YP_003650190.1| - 0.0042 16.9 2.5 0.0047 16.7 0.0 2.3 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.1 gi|296242703|ref|YP_003650190.1| - 0.034 13.3 10.3 0.52 9.6 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|296242703|ref|YP_003650190.1| - 0.043 13.6 5.1 0.11 12.2 1.7 2.5 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|296242703|ref|YP_003650190.1| - 0.098 12.1 8.4 3.7 7.1 1.2 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|296242703|ref|YP_003650190.1| - 0.59 9.6 4.3 8.2 6.0 0.0 2.8 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-dskA_traR PF01258.12 gi|296242703|ref|YP_003650190.1| - 0.71 9.6 4.6 1.9 8.2 1.4 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Prok-RING_1 PF14446.1 gi|296242703|ref|YP_003650190.1| - 1.7 8.4 8.1 4 7.2 0.0 2.6 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.1 gi|296242703|ref|YP_003650190.1| - 2.8 7.2 5.3 1.2 8.4 0.9 2.4 2 1 0 2 2 2 0 Transcription factor zinc-finger eIF-1a PF01176.14 gi|296242704|ref|YP_003650191.1| - 1e-19 69.6 0.4 1.2e-19 69.4 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 RIO1 PF01163.17 gi|296242705|ref|YP_003650192.1| - 1.6e-60 203.6 0.0 2.4e-60 203.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|296242705|ref|YP_003650192.1| - 7.8e-09 35.6 0.0 2.9e-05 23.9 0.0 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|296242705|ref|YP_003650192.1| - 0.0002 20.5 0.3 0.0016 17.5 0.2 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|296242705|ref|YP_003650192.1| - 0.00024 20.3 0.0 0.00059 19.0 0.0 1.7 1 1 1 2 2 2 1 Protein kinase domain KH_1 PF00013.24 gi|296242706|ref|YP_003650193.1| - 4.3e-15 55.1 1.8 1.1e-07 31.3 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|296242706|ref|YP_003650193.1| - 1.4e-09 37.3 1.0 0.00014 21.4 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|296242706|ref|YP_003650193.1| - 0.00057 19.4 2.0 0.13 11.8 0.3 2.7 2 0 0 2 2 2 2 KH domain EamA PF00892.15 gi|296242707|ref|YP_003650194.1| - 9.2e-19 67.7 17.0 1.1e-18 67.5 11.8 1.0 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|296242707|ref|YP_003650194.1| - 1.8e-08 34.5 12.8 1.8e-08 34.5 8.8 1.5 2 0 0 2 2 2 1 Multidrug resistance efflux transporter TPT PF03151.11 gi|296242707|ref|YP_003650194.1| - 6.4e-05 22.6 15.9 9.7e-05 22.0 11.0 1.2 1 0 0 1 1 1 1 Triose-phosphate Transporter family DUF914 PF06027.7 gi|296242707|ref|YP_003650194.1| - 0.057 12.2 10.3 0.064 12.0 7.1 1.0 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF914) UPF0546 PF10639.4 gi|296242707|ref|YP_003650194.1| - 0.76 9.6 6.2 0.19 11.5 1.7 1.8 1 1 1 2 2 2 0 Uncharacterised protein family UPF0546 Pox_A14 PF05767.7 gi|296242707|ref|YP_003650194.1| - 4.2 7.3 7.8 0.33 10.9 1.1 2.2 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 Peptidase_U4 PF03419.8 gi|296242707|ref|YP_003650194.1| - 5.3 6.0 10.8 7.8 5.4 7.5 1.4 1 1 0 1 1 1 0 Sporulation factor SpoIIGA ACR_tran PF00873.14 gi|296242708|ref|YP_003650195.1| - 1.8 5.8 5.1 2.2 5.5 3.6 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Tetraspannin PF00335.15 gi|296242708|ref|YP_003650195.1| - 7.5 5.7 8.9 15 4.7 6.2 1.6 1 1 0 1 1 1 0 Tetraspanin family DZR PF12773.2 gi|296242709|ref|YP_003650196.1| - 0.03 14.1 0.4 0.053 13.3 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|296242709|ref|YP_003650196.1| - 0.062 12.7 1.8 0.3 10.5 1.3 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|296242709|ref|YP_003650196.1| - 0.084 12.3 3.3 0.25 10.8 2.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|296242709|ref|YP_003650196.1| - 0.22 10.7 3.0 0.89 8.8 2.2 1.8 1 1 1 2 2 2 0 zinc-ribbon domain TPR_11 PF13414.1 gi|296242710|ref|YP_003650197.1| - 0.0048 16.5 4.9 0.56 9.8 0.1 3.7 4 1 0 4 4 4 1 TPR repeat MIT PF04212.13 gi|296242710|ref|YP_003650197.1| - 0.012 15.4 2.6 0.17 11.7 0.0 2.9 3 0 0 3 3 3 0 MIT (microtubule interacting and transport) domain Rad50_zn_hook PF04423.9 gi|296242710|ref|YP_003650197.1| - 0.014 14.8 0.0 0.049 13.1 0.0 2.0 1 0 0 1 1 1 0 Rad50 zinc hook motif Leuk-A4-hydro_C PF09127.6 gi|296242710|ref|YP_003650197.1| - 0.046 13.3 0.3 0.13 11.8 0.1 1.8 2 0 0 2 2 2 0 Leukotriene A4 hydrolase, C-terminal zf-FCS PF06467.9 gi|296242710|ref|YP_003650197.1| - 0.059 13.0 0.0 0.13 11.8 0.0 1.6 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif GnsAB PF08178.6 gi|296242710|ref|YP_003650197.1| - 0.085 12.5 0.0 0.27 10.9 0.0 1.8 1 0 0 1 1 1 0 GnsA/GnsB family TPR_2 PF07719.12 gi|296242710|ref|YP_003650197.1| - 0.11 12.4 8.4 0.79 9.7 0.0 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF1657 PF07870.6 gi|296242710|ref|YP_003650197.1| - 0.11 12.1 0.4 0.32 10.7 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1657) TPR_12 PF13424.1 gi|296242710|ref|YP_003650197.1| - 0.15 12.0 2.1 25 4.9 0.0 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF2874 PF11396.3 gi|296242710|ref|YP_003650197.1| - 0.16 12.0 0.3 0.45 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) TPR_8 PF13181.1 gi|296242710|ref|YP_003650197.1| - 0.49 10.3 5.2 14 5.7 0.0 3.8 3 0 0 3 3 3 0 Tetratricopeptide repeat Band_7_1 PF13421.1 gi|296242711|ref|YP_003650198.1| - 1.5e-34 119.4 0.0 2e-34 118.9 0.0 1.1 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.20 gi|296242711|ref|YP_003650198.1| - 1.1e-15 58.0 0.1 1.9e-15 57.2 0.1 1.4 1 0 0 1 1 1 1 SPFH domain / Band 7 family SHOCT PF09851.4 gi|296242711|ref|YP_003650198.1| - 4.4e-09 35.5 5.4 8e-09 34.6 3.8 1.5 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|296242711|ref|YP_003650198.1| - 3.2e-05 23.6 2.9 0.00019 21.1 0.6 2.3 2 0 0 2 2 2 1 Gas vesicle protein G DMAP_binding PF06464.6 gi|296242711|ref|YP_003650198.1| - 9.9e-05 22.9 1.0 0.00016 22.2 0.7 1.3 1 0 0 1 1 1 1 DMAP1-binding Domain Syntaxin_2 PF14523.1 gi|296242712|ref|YP_003650199.1| - 0.0082 16.1 0.1 4.4 7.3 0.0 2.2 2 0 0 2 2 2 2 Syntaxin-like protein TBCA PF02970.11 gi|296242712|ref|YP_003650199.1| - 0.0094 15.9 2.8 0.032 14.3 0.1 2.5 2 1 1 3 3 3 1 Tubulin binding cofactor A ALIX_LYPXL_bnd PF13949.1 gi|296242712|ref|YP_003650199.1| - 0.017 14.1 0.3 0.21 10.4 0.0 2.0 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV Syntaxin PF00804.20 gi|296242712|ref|YP_003650199.1| - 0.094 12.8 0.2 1.3 9.1 0.0 2.1 2 0 0 2 2 2 0 Syntaxin Scm3 PF10384.4 gi|296242712|ref|YP_003650199.1| - 0.38 10.2 1.8 0.59 9.6 0.1 2.1 3 0 0 3 3 3 0 Centromere protein Scm3 Spore_II_R PF09551.5 gi|296242713|ref|YP_003650200.1| - 1.6 8.7 3.7 3.1 7.8 0.0 2.5 2 0 0 2 2 2 0 Stage II sporulation protein R (spore_II_R) tRNA-synt_2c PF01411.14 gi|296242714|ref|YP_003650201.1| - 2.4e-10 39.3 0.0 3.2e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|296242714|ref|YP_003650201.1| - 7.1e-07 29.0 0.2 1.4e-06 28.0 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain ABC2_membrane_2 PF12679.2 gi|296242715|ref|YP_003650202.1| - 3.7e-23 81.7 0.0 1.1e-22 80.2 0.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|296242715|ref|YP_003650202.1| - 0.0089 15.2 40.2 0.065 12.3 27.9 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein YadA_stalk PF05662.9 gi|296242715|ref|YP_003650202.1| - 0.1 12.4 0.3 0.26 11.1 0.2 1.7 1 0 0 1 1 1 0 Coiled stalk of trimeric autotransporter adhesin ABC_tran PF00005.22 gi|296242716|ref|YP_003650203.1| - 5.2e-21 75.3 0.0 8e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242716|ref|YP_003650203.1| - 2.6e-09 37.4 0.0 5e-07 29.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain YcfA PF07927.7 gi|296242716|ref|YP_003650203.1| - 0.072 13.0 0.2 6 6.8 0.0 2.8 2 1 0 2 2 2 0 YcfA-like protein DUF927 PF06048.6 gi|296242716|ref|YP_003650203.1| - 0.12 11.5 0.0 2.8 7.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF927) EamA PF00892.15 gi|296242717|ref|YP_003650204.1| - 6.7e-28 97.2 36.5 3.6e-14 52.8 9.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|296242717|ref|YP_003650204.1| - 0.00011 22.3 4.0 0.00011 22.3 2.8 3.7 1 1 1 3 3 3 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|296242717|ref|YP_003650204.1| - 1.5 8.6 13.5 0.077 12.8 1.2 3.4 4 0 0 4 4 4 0 Uncharacterised protein family UPF0546 KH_5 PF13184.1 gi|296242718|ref|YP_003650205.1| - 1.9e-09 37.1 1.2 1.5e-08 34.3 0.1 2.2 2 0 0 2 2 2 1 NusA-like KH domain Ribosomal_S7e PF01251.13 gi|296242718|ref|YP_003650205.1| - 0.00025 20.5 0.8 0.016 14.6 0.0 2.3 1 1 1 2 2 2 2 Ribosomal protein S7e HAD PF12710.2 gi|296242718|ref|YP_003650205.1| - 0.013 15.6 0.1 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase IGPS PF00218.16 gi|296242718|ref|YP_003650205.1| - 0.042 12.9 0.1 0.056 12.4 0.1 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase TruD PF01142.13 gi|296242719|ref|YP_003650206.1| - 8e-45 153.1 0.0 8.2e-40 136.6 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|296242720|ref|YP_003650207.1| - 5e-44 148.6 0.0 5.6e-44 148.5 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 HSP20 PF00011.16 gi|296242721|ref|YP_003650208.1| - 0.053 13.3 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Hsp20/alpha crystallin family DUF1610 PF07754.6 gi|296242722|ref|YP_003650209.1| - 7.8e-11 41.8 16.3 2.1e-07 30.9 4.0 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|296242722|ref|YP_003650209.1| - 0.00053 19.5 9.1 0.026 14.1 2.8 2.2 1 1 1 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|296242722|ref|YP_003650209.1| - 0.00077 19.2 13.1 0.058 13.2 9.3 2.6 1 1 1 2 2 2 2 Double zinc ribbon DUF1272 PF06906.6 gi|296242722|ref|YP_003650209.1| - 0.0052 16.5 11.3 4.5 7.1 7.9 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) PolC_DP2 PF03833.8 gi|296242722|ref|YP_003650209.1| - 0.008 13.9 4.3 0.0084 13.8 3.0 1.1 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 tRNA-synt_1f PF01921.13 gi|296242722|ref|YP_003650209.1| - 0.012 14.3 1.4 0.017 13.8 0.9 1.5 1 1 0 1 1 1 0 tRNA synthetases class I (K) HypA PF01155.14 gi|296242722|ref|YP_003650209.1| - 0.015 14.9 8.2 0.78 9.4 5.7 2.1 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|296242722|ref|YP_003650209.1| - 0.047 12.9 18.1 0.29 10.3 2.8 3.5 1 1 3 4 4 4 0 zinc-ribbon domain PSCyt3 PF07627.6 gi|296242722|ref|YP_003650209.1| - 0.071 12.9 0.1 0.071 12.9 0.1 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF1588) Acetone_carb_G PF08882.6 gi|296242722|ref|YP_003650209.1| - 0.089 12.8 3.7 5.8 6.9 0.3 2.3 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit DUF4503 PF14951.1 gi|296242722|ref|YP_003650209.1| - 0.17 9.9 2.2 0.2 9.7 1.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) UPF0547 PF10571.4 gi|296242722|ref|YP_003650209.1| - 0.18 11.5 17.3 0.052 13.2 7.4 2.9 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Spt4 PF06093.8 gi|296242722|ref|YP_003650209.1| - 0.23 11.3 10.2 0.24 11.2 1.4 2.2 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger DUF2296 PF10058.4 gi|296242722|ref|YP_003650209.1| - 0.39 10.4 13.4 5.4 6.8 1.7 3.5 2 2 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_5 PF14634.1 gi|296242722|ref|YP_003650209.1| - 0.47 10.2 11.1 1.9 8.2 0.7 2.2 2 0 0 2 2 2 0 zinc-RING finger domain zf-MYND PF01753.13 gi|296242722|ref|YP_003650209.1| - 0.59 10.0 11.5 42 4.1 8.5 2.4 1 1 1 2 2 2 0 MYND finger zf-Mss51 PF13824.1 gi|296242722|ref|YP_003650209.1| - 0.59 10.0 10.5 1.7 8.5 1.7 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Sgf11 PF08209.6 gi|296242722|ref|YP_003650209.1| - 0.61 9.4 13.8 1.7 7.9 0.1 3.7 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-B_box PF00643.19 gi|296242722|ref|YP_003650209.1| - 0.75 9.7 13.5 0.53 10.2 2.1 2.6 1 1 1 2 2 2 0 B-box zinc finger DUF164 PF02591.10 gi|296242722|ref|YP_003650209.1| - 0.82 9.5 13.2 1.9 8.3 0.1 3.4 2 2 0 3 3 3 0 Putative zinc ribbon domain zf-CHY PF05495.7 gi|296242722|ref|YP_003650209.1| - 0.82 9.8 9.0 3.1 8.0 6.2 1.9 1 1 0 1 1 1 0 CHY zinc finger ADK_lid PF05191.9 gi|296242722|ref|YP_003650209.1| - 0.84 9.3 11.5 3.9 7.2 0.2 3.6 3 1 0 3 3 3 0 Adenylate kinase, active site lid A2L_zn_ribbon PF08792.5 gi|296242722|ref|YP_003650209.1| - 0.91 9.0 13.1 3.3 7.2 2.0 3.1 2 2 0 2 2 2 0 A2L zinc ribbon domain Rpr2 PF04032.11 gi|296242722|ref|YP_003650209.1| - 0.94 9.3 7.7 3.9 7.4 5.3 2.1 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain NOB1_Zn_bind PF08772.6 gi|296242722|ref|YP_003650209.1| - 1 9.2 10.0 0.23 11.3 2.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_4 PF13717.1 gi|296242722|ref|YP_003650209.1| - 1.1 9.0 13.6 6.5 6.5 0.0 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|296242722|ref|YP_003650209.1| - 1.1 9.0 9.7 12 5.7 4.7 2.2 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|296242722|ref|YP_003650209.1| - 1.5 8.8 18.1 1.9 8.5 2.0 3.9 1 1 1 3 3 3 0 Zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|296242722|ref|YP_003650209.1| - 1.6 9.0 7.2 1.6 9.0 3.9 1.7 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Nop10p PF04135.7 gi|296242722|ref|YP_003650209.1| - 2.3 8.0 5.3 0.75 9.5 0.6 2.1 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family Ribosomal_L37ae PF01780.14 gi|296242722|ref|YP_003650209.1| - 2.8 7.8 5.3 19 5.1 0.4 2.7 1 1 2 3 3 3 0 Ribosomal L37ae protein family zinc_ribbon_5 PF13719.1 gi|296242722|ref|YP_003650209.1| - 3 7.5 14.7 7.1 6.3 0.0 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|296242722|ref|YP_003650209.1| - 3.6 8.1 14.4 12 6.4 2.3 3.8 3 1 0 3 3 3 0 Zinc finger, C2H2 type Gin PF10764.4 gi|296242722|ref|YP_003650209.1| - 4.5 7.0 7.6 4.5 7.0 0.1 3.2 2 2 1 3 3 3 0 Inhibitor of sigma-G Gin zinc_ribbon_2 PF13240.1 gi|296242722|ref|YP_003650209.1| - 5 6.7 18.1 4.6 6.8 2.7 3.2 2 2 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|296242722|ref|YP_003650209.1| - 5.6 6.8 21.1 31 4.4 0.1 3.8 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-HIT PF04438.11 gi|296242722|ref|YP_003650209.1| - 6.1 6.5 15.7 4.3 7.0 4.3 3.1 2 2 0 2 2 2 0 HIT zinc finger TerY-C PF15616.1 gi|296242722|ref|YP_003650209.1| - 6.7 6.6 9.6 46 3.9 6.7 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain Tnp_zf-ribbon_2 PF13842.1 gi|296242722|ref|YP_003650209.1| - 7.4 7.0 11.0 16 6.0 0.4 2.8 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-C3HC4_2 PF13923.1 gi|296242722|ref|YP_003650209.1| - 8 6.5 10.2 17 5.5 7.0 1.6 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_4 PF15227.1 gi|296242722|ref|YP_003650209.1| - 8.6 6.3 10.4 2.7 7.9 0.6 2.3 1 1 1 2 2 2 0 zinc finger of C3HC4-type, RING Opy2 PF09463.5 gi|296242722|ref|YP_003650209.1| - 9.3 6.4 11.9 7.7 6.6 1.7 3.1 3 0 0 3 3 3 0 Opy2 protein Nudix_N_2 PF14803.1 gi|296242722|ref|YP_003650209.1| - 9.3 6.0 16.0 4.7 6.9 0.1 3.7 1 1 2 3 3 3 0 Nudix N-terminal zf-AN1 PF01428.11 gi|296242722|ref|YP_003650209.1| - 9.9 6.1 13.0 28 4.6 1.9 3.0 2 2 1 3 3 3 0 AN1-like Zinc finger EF1_GNE PF00736.14 gi|296242723|ref|YP_003650210.1| - 3.3e-21 74.7 0.0 3.6e-21 74.6 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DELLA PF12041.3 gi|296242723|ref|YP_003650210.1| - 0.089 12.4 0.0 0.26 10.9 0.0 1.9 1 1 0 1 1 1 0 Transcriptional regulator DELLA protein N terminal AAA PF00004.24 gi|296242724|ref|YP_003650211.1| - 3.5e-97 321.7 0.0 1.7e-48 164.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|296242724|ref|YP_003650211.1| - 3.1e-21 75.0 0.2 7.4e-21 73.9 0.1 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|296242724|ref|YP_003650211.1| - 5.9e-16 58.9 0.1 1e-07 32.1 0.0 3.1 2 2 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|296242724|ref|YP_003650211.1| - 2.1e-14 53.7 0.0 1.6e-07 31.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|296242724|ref|YP_003650211.1| - 5.6e-14 52.0 0.3 1.7e-05 24.5 0.0 3.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|296242724|ref|YP_003650211.1| - 1.1e-13 52.1 0.1 3.3e-07 31.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|296242724|ref|YP_003650211.1| - 2.3e-13 49.7 0.0 8.7e-06 24.9 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|296242724|ref|YP_003650211.1| - 7.5e-13 48.7 0.7 9.3e-06 25.8 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|296242724|ref|YP_003650211.1| - 1.2e-11 44.6 0.0 4.7e-06 26.5 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|296242724|ref|YP_003650211.1| - 1.3e-11 44.4 0.0 0.00019 21.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|296242724|ref|YP_003650211.1| - 8.4e-11 41.2 0.0 0.00021 20.1 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|296242724|ref|YP_003650211.1| - 2e-10 40.1 0.0 0.00017 20.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|296242724|ref|YP_003650211.1| - 1.7e-09 37.3 0.1 0.00061 19.2 0.0 2.6 3 0 0 3 3 2 2 IstB-like ATP binding protein AAA_28 PF13521.1 gi|296242724|ref|YP_003650211.1| - 6e-09 36.0 0.0 0.001 19.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|296242724|ref|YP_003650211.1| - 2.8e-08 33.7 3.9 0.0033 17.1 0.2 4.4 3 2 1 4 4 3 2 Archaeal ATPase AAA_18 PF13238.1 gi|296242724|ref|YP_003650211.1| - 3.2e-08 33.9 0.0 0.0018 18.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|296242724|ref|YP_003650211.1| - 3.7e-08 33.4 0.0 0.012 15.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_19 PF13245.1 gi|296242724|ref|YP_003650211.1| - 6.1e-08 32.3 0.0 0.0079 15.9 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain CDC48_2 PF02933.12 gi|296242724|ref|YP_003650211.1| - 2.2e-07 30.4 0.2 4.5e-07 29.4 0.1 1.6 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 DUF815 PF05673.8 gi|296242724|ref|YP_003650211.1| - 4.2e-07 29.1 0.0 0.008 15.1 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|296242724|ref|YP_003650211.1| - 7.3e-07 28.5 3.1 0.017 14.2 0.1 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|296242724|ref|YP_003650211.1| - 1.3e-06 28.1 0.0 0.021 14.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|296242724|ref|YP_003650211.1| - 2e-06 27.5 0.4 0.33 10.5 0.0 3.6 4 0 0 4 4 3 2 NACHT domain Sigma54_activat PF00158.21 gi|296242724|ref|YP_003650211.1| - 2.4e-06 27.1 0.3 0.1 12.0 0.0 3.6 2 2 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|296242724|ref|YP_003650211.1| - 4e-06 27.1 0.0 0.059 13.6 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.1 gi|296242724|ref|YP_003650211.1| - 1.2e-05 24.8 9.5 0.17 11.2 0.2 4.4 2 2 1 3 3 3 2 AAA domain Sigma54_activ_2 PF14532.1 gi|296242724|ref|YP_003650211.1| - 1.7e-05 24.8 0.0 0.18 11.8 0.0 2.7 3 0 0 3 3 2 2 Sigma-54 interaction domain Parvo_NS1 PF01057.12 gi|296242724|ref|YP_003650211.1| - 2.5e-05 23.2 0.1 0.03 13.1 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 KaiC PF06745.8 gi|296242724|ref|YP_003650211.1| - 2.7e-05 23.3 1.3 0.26 10.3 0.0 3.9 3 1 1 4 4 4 2 KaiC PhoH PF02562.11 gi|296242724|ref|YP_003650211.1| - 8e-05 21.9 0.2 0.25 10.5 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein ATP-synt_ab PF00006.20 gi|296242724|ref|YP_003650211.1| - 9.5e-05 21.9 0.0 0.4 10.1 0.0 2.4 2 0 0 2 2 2 2 ATP synthase alpha/beta family, nucleotide-binding domain AAA_3 PF07726.6 gi|296242724|ref|YP_003650211.1| - 0.00011 21.8 0.0 0.4 10.2 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|296242724|ref|YP_003650211.1| - 0.00018 21.3 0.0 0.089 12.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|296242724|ref|YP_003650211.1| - 0.00021 20.9 0.0 0.029 13.8 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.17 gi|296242724|ref|YP_003650211.1| - 0.0003 19.7 0.0 0.47 9.2 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain DUF2075 PF09848.4 gi|296242724|ref|YP_003650211.1| - 0.00052 19.1 0.0 0.049 12.5 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|296242724|ref|YP_003650211.1| - 0.00055 19.6 0.0 0.37 10.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein KTI12 PF08433.5 gi|296242724|ref|YP_003650211.1| - 0.00061 19.0 0.0 0.35 10.0 0.0 3.1 3 0 0 3 3 3 1 Chromatin associated protein KTI12 SKI PF01202.17 gi|296242724|ref|YP_003650211.1| - 0.00095 19.0 0.0 1.8 8.4 0.0 2.6 2 0 0 2 2 2 2 Shikimate kinase UPF0079 PF02367.12 gi|296242724|ref|YP_003650211.1| - 0.00097 18.7 0.0 1.3 8.6 0.0 2.8 3 0 0 3 3 2 1 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|296242724|ref|YP_003650211.1| - 0.0021 16.9 0.0 0.21 10.4 0.0 2.5 2 1 0 2 2 2 1 Type II/IV secretion system protein DAP3 PF10236.4 gi|296242724|ref|YP_003650211.1| - 0.0044 15.9 0.0 1.2 7.9 0.0 2.3 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 KAP_NTPase PF07693.9 gi|296242724|ref|YP_003650211.1| - 0.0045 16.0 0.1 6.2 5.7 0.1 3.2 2 1 1 3 3 3 0 KAP family P-loop domain NTPase_1 PF03266.10 gi|296242724|ref|YP_003650211.1| - 0.0062 16.2 0.2 9.3 5.9 0.0 3.6 2 2 0 2 2 2 0 NTPase PduV-EutP PF10662.4 gi|296242724|ref|YP_003650211.1| - 0.0075 15.7 0.0 3 7.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|296242724|ref|YP_003650211.1| - 0.0075 16.6 0.0 1.3 9.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.11 gi|296242724|ref|YP_003650211.1| - 0.0095 14.7 0.0 1.2 7.9 0.0 2.3 2 0 0 2 2 2 1 AFG1-like ATPase Vps4_C PF09336.5 gi|296242724|ref|YP_003650211.1| - 0.011 15.6 0.0 0.046 13.6 0.0 2.1 2 0 0 2 2 1 0 Vps4 C terminal oligomerisation domain IPT PF01745.11 gi|296242724|ref|YP_003650211.1| - 0.019 14.1 0.1 6.2 5.9 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Rad17 PF03215.10 gi|296242724|ref|YP_003650211.1| - 0.024 13.3 0.0 1.3 7.5 0.0 2.4 2 1 1 3 3 3 0 Rad17 cell cycle checkpoint protein AAA_11 PF13086.1 gi|296242724|ref|YP_003650211.1| - 0.026 14.1 0.0 1.9 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|296242724|ref|YP_003650211.1| - 0.03 13.7 1.2 17 4.7 0.0 3.6 2 2 2 4 4 4 0 AAA-like domain cobW PF02492.14 gi|296242724|ref|YP_003650211.1| - 0.04 13.3 0.1 4.5 6.6 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|296242724|ref|YP_003650211.1| - 0.04 13.4 0.0 3.2 7.2 0.0 2.6 2 0 0 2 2 2 0 AAA domain Guanylate_kin PF00625.16 gi|296242724|ref|YP_003650211.1| - 0.045 13.2 0.1 15 4.9 0.0 3.6 2 2 2 4 4 4 0 Guanylate kinase DUF2267 PF10025.4 gi|296242724|ref|YP_003650211.1| - 0.057 13.4 0.4 11 6.1 0.0 2.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) SRPRB PF09439.5 gi|296242724|ref|YP_003650211.1| - 0.11 11.7 0.0 13 4.9 0.0 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_21 PF13304.1 gi|296242724|ref|YP_003650211.1| - 0.14 12.0 1.6 7.9 6.3 0.3 3.2 3 1 0 3 3 2 0 AAA domain PadR PF03551.9 gi|296242725|ref|YP_003650212.1| - 0.0096 15.6 0.1 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|296242725|ref|YP_003650212.1| - 0.021 14.6 0.0 0.024 14.4 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.14 gi|296242725|ref|YP_003650212.1| - 0.026 14.2 0.0 0.032 13.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|296242725|ref|YP_003650212.1| - 0.057 13.3 0.0 0.067 13.1 0.0 1.0 1 0 0 1 1 1 0 Ferric uptake regulator family XPG_I PF00867.13 gi|296242726|ref|YP_003650213.1| - 1.6e-25 89.0 0.0 3.8e-25 87.7 0.0 1.7 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|296242726|ref|YP_003650213.1| - 1.5e-19 70.1 0.0 2.8e-19 69.2 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|296242726|ref|YP_003650213.1| - 5.1e-05 23.4 0.2 0.00021 21.4 0.0 2.1 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|296242726|ref|YP_003650213.1| - 0.089 12.6 0.0 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif Cytochrom_B561 PF03188.11 gi|296242727|ref|YP_003650214.1| - 0.0087 15.9 0.0 0.0095 15.7 0.0 1.1 1 0 0 1 1 1 1 Eukaryotic cytochrome b561 DUF202 PF02656.10 gi|296242727|ref|YP_003650214.1| - 0.023 14.9 0.1 0.03 14.5 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) DUF308 PF03729.8 gi|296242727|ref|YP_003650214.1| - 0.025 14.5 1.2 0.036 14.0 0.9 1.3 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF4190 PF13828.1 gi|296242727|ref|YP_003650214.1| - 0.033 13.7 1.2 0.059 12.9 0.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4190) DUF973 PF06157.6 gi|296242727|ref|YP_003650214.1| - 0.056 12.4 0.5 0.066 12.1 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) NADH-u_ox-rdase PF10785.4 gi|296242727|ref|YP_003650214.1| - 0.072 13.3 0.0 0.098 12.9 0.0 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit NfeD PF01957.13 gi|296242727|ref|YP_003650214.1| - 0.1 12.7 0.1 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4064 PF13273.1 gi|296242727|ref|YP_003650214.1| - 5 7.2 7.4 8.4 6.5 4.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) PCMT PF01135.14 gi|296242728|ref|YP_003650215.1| - 3.1e-67 226.1 0.0 3.8e-67 225.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|296242728|ref|YP_003650215.1| - 4.6e-09 36.8 0.0 6.5e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|296242728|ref|YP_003650215.1| - 2.7e-08 33.5 0.0 3.4e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|296242728|ref|YP_003650215.1| - 1.3e-07 31.6 0.0 1.9e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|296242728|ref|YP_003650215.1| - 2.4e-06 27.2 0.0 3.2e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.1 gi|296242728|ref|YP_003650215.1| - 2.3e-05 25.1 0.0 3.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|296242728|ref|YP_003650215.1| - 8.8e-05 21.6 0.0 0.00015 20.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_3 PF01596.12 gi|296242728|ref|YP_003650215.1| - 0.00034 19.7 0.0 0.0005 19.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.9 gi|296242728|ref|YP_003650215.1| - 0.00061 19.2 0.0 0.00097 18.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|296242728|ref|YP_003650215.1| - 0.00095 18.8 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|296242728|ref|YP_003650215.1| - 0.012 14.6 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|296242728|ref|YP_003650215.1| - 0.019 15.4 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|296242728|ref|YP_003650215.1| - 0.049 13.3 0.0 0.088 12.5 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.12 gi|296242728|ref|YP_003650215.1| - 0.14 11.0 0.1 0.18 10.6 0.1 1.1 1 0 0 1 1 1 0 Fibrillarin DUF371 PF04027.8 gi|296242729|ref|YP_003650216.1| - 5.9e-41 139.2 0.0 6.8e-41 139.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Met_10 PF02475.11 gi|296242730|ref|YP_003650217.1| - 4.7e-45 153.6 0.0 8.9e-45 152.7 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|296242730|ref|YP_003650217.1| - 2.4e-08 33.9 0.0 2.3e-07 30.8 0.0 2.4 3 1 0 3 3 3 1 Methyltransferase domain DNA_methylase PF00145.12 gi|296242730|ref|YP_003650217.1| - 0.00035 19.8 0.0 0.00051 19.2 0.0 1.2 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase PrmA PF06325.8 gi|296242730|ref|YP_003650217.1| - 0.00092 18.4 0.0 0.0014 17.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|296242730|ref|YP_003650217.1| - 0.0037 16.6 0.0 0.0071 15.7 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 TRM PF02005.11 gi|296242730|ref|YP_003650217.1| - 0.018 13.9 0.3 0.033 13.1 0.2 1.4 1 1 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_16 PF10294.4 gi|296242730|ref|YP_003650217.1| - 0.059 12.8 0.0 0.14 11.5 0.0 1.7 2 0 0 2 2 2 0 Putative methyltransferase NAD_kinase PF01513.16 gi|296242731|ref|YP_003650218.1| - 7.7e-25 87.2 0.0 8.9e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|296242731|ref|YP_003650218.1| - 0.0097 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain zf-ribbon_3 PF13248.1 gi|296242732|ref|YP_003650219.1| - 0.0015 17.6 3.0 0.0022 17.1 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|296242732|ref|YP_003650219.1| - 0.0067 15.8 2.6 0.5 9.8 0.1 2.6 2 0 0 2 2 2 1 Rad50 zinc hook motif UPF0547 PF10571.4 gi|296242732|ref|YP_003650219.1| - 0.017 14.7 1.8 2.2 8.0 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|296242732|ref|YP_003650219.1| - 0.05 13.4 0.4 0.083 12.7 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|296242732|ref|YP_003650219.1| - 0.07 12.8 2.8 3.6 7.3 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PIN PF01850.16 gi|296242732|ref|YP_003650219.1| - 0.1 12.9 0.1 0.37 11.1 0.1 1.8 1 1 0 1 1 1 0 PIN domain OrfB_Zn_ribbon PF07282.6 gi|296242732|ref|YP_003650219.1| - 0.13 11.9 0.6 0.25 11.0 0.4 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|296242732|ref|YP_003650219.1| - 0.22 11.8 1.0 18 5.7 0.1 2.4 2 0 0 2 2 2 0 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.7 gi|296242732|ref|YP_003650219.1| - 0.39 10.5 4.0 0.2 11.4 0.5 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|296242732|ref|YP_003650219.1| - 0.7 9.4 4.9 1.6 8.3 3.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|296242732|ref|YP_003650219.1| - 2.3 7.6 4.8 16 4.9 3.5 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding zf-C2H2 PF00096.21 gi|296242732|ref|YP_003650219.1| - 7.3 7.1 6.0 19 5.8 0.1 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type Nol1_Nop2_Fmu PF01189.12 gi|296242733|ref|YP_003650220.1| - 5.1e-31 108.0 0.0 3.2e-30 105.4 0.0 1.9 2 0 0 2 2 2 1 NOL1/NOP2/sun family PUA PF01472.15 gi|296242733|ref|YP_003650220.1| - 2.9e-13 49.3 0.3 7.3e-13 48.0 0.2 1.7 1 0 0 1 1 1 1 PUA domain Methyltransf_31 PF13847.1 gi|296242733|ref|YP_003650220.1| - 2.3e-05 24.0 0.0 4.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|296242733|ref|YP_003650220.1| - 0.0023 17.9 0.0 0.0039 17.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|296242733|ref|YP_003650220.1| - 0.0025 17.8 0.0 0.0047 16.9 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_18 PF12847.2 gi|296242733|ref|YP_003650220.1| - 0.01 16.3 0.0 0.017 15.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|296242733|ref|YP_003650220.1| - 0.015 14.7 0.0 0.036 13.4 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical protein 95 MTS PF05175.9 gi|296242733|ref|YP_003650220.1| - 0.021 14.1 0.0 0.038 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|296242733|ref|YP_003650220.1| - 0.027 14.0 0.0 0.044 13.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.7 gi|296242733|ref|YP_003650220.1| - 0.035 14.5 0.0 0.36 11.3 0.0 2.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.14 gi|296242733|ref|YP_003650220.1| - 0.042 13.1 0.0 0.079 12.2 0.0 1.4 1 0 0 1 1 1 0 MraW methylase family Methyltransf_8 PF05148.10 gi|296242733|ref|YP_003650220.1| - 0.063 12.8 0.0 0.35 10.4 0.0 2.0 2 0 0 2 2 2 0 Hypothetical methyltransferase DEAD_2 PF06733.10 gi|296242734|ref|YP_003650221.1| - 0.1 11.9 1.2 0.16 11.3 0.2 1.7 1 1 1 2 2 2 0 DEAD_2 DUF2283 PF10049.4 gi|296242735|ref|YP_003650222.1| - 6.7e-07 29.0 0.2 1.1e-06 28.4 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF3876 PF12992.2 gi|296242735|ref|YP_003650222.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3876) Tobravirus_2B PF05271.6 gi|296242735|ref|YP_003650222.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Tobravirus 2B protein Nitro_FeMo-Co PF02579.12 gi|296242737|ref|YP_003650224.1| - 0.0029 17.6 0.0 0.0035 17.3 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Bac_rhamnosid_N PF08531.5 gi|296242737|ref|YP_003650224.1| - 0.11 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Alpha-L-rhamnosidase N-terminal domain DUF1886 PF09171.5 gi|296242738|ref|YP_003650225.1| - 6.3e-53 179.3 0.0 7.7e-53 179.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) HD PF01966.17 gi|296242739|ref|YP_003650226.1| - 2.6e-15 56.4 0.2 4.6e-15 55.7 0.2 1.4 1 0 0 1 1 1 1 HD domain Radical_SAM PF04055.16 gi|296242740|ref|YP_003650227.1| - 2.3e-13 50.6 0.2 5.8e-13 49.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|296242740|ref|YP_003650227.1| - 1e-10 41.8 0.0 2.1e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|296242740|ref|YP_003650227.1| - 2.7e-08 33.8 0.0 5.1e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain tRNA-synt_1 PF00133.17 gi|296242742|ref|YP_003650229.1| - 1.9e-113 379.5 0.0 2.5e-112 375.9 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|296242742|ref|YP_003650229.1| - 3.9e-35 121.2 0.2 4.3e-17 61.8 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|296242742|ref|YP_003650229.1| - 4.8e-29 101.0 0.8 9.7e-29 100.0 0.5 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|296242742|ref|YP_003650229.1| - 6.8e-06 25.5 0.0 0.00037 19.8 0.0 2.3 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 Mut7-C PF01927.11 gi|296242742|ref|YP_003650229.1| - 0.0028 17.6 0.5 1.4 8.8 0.0 3.5 2 2 0 2 2 2 1 Mut7-C RNAse domain tRNA-synt_1f PF01921.13 gi|296242742|ref|YP_003650229.1| - 0.035 12.8 0.0 1.2 7.6 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.2 gi|296242742|ref|YP_003650229.1| - 0.11 12.3 2.1 15 5.5 0.5 3.3 3 1 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|296242742|ref|YP_003650229.1| - 0.26 10.5 5.8 0.22 10.7 0.3 3.0 3 1 0 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|296242742|ref|YP_003650229.1| - 0.53 9.5 6.3 11 5.2 0.0 3.9 4 0 0 4 4 4 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|296242742|ref|YP_003650229.1| - 1.8 8.1 5.5 1 8.9 0.4 2.6 3 0 0 3 3 3 0 zinc-ribbon domain PHP PF02811.14 gi|296242743|ref|YP_003650230.1| - 1.2e-17 64.2 0.1 8.8e-15 54.9 0.0 3.0 2 1 0 2 2 2 2 PHP domain PHP_C PF13263.1 gi|296242743|ref|YP_003650230.1| - 2.4e-15 55.7 0.1 4.9e-15 54.7 0.1 1.5 1 0 0 1 1 1 1 PHP-associated zf-C3HC4_3 PF13920.1 gi|296242744|ref|YP_003650231.1| - 0.00093 18.8 8.5 0.0098 15.5 6.0 2.4 1 1 1 2 2 2 2 Zinc finger, C3HC4 type (RING finger) DZR PF12773.2 gi|296242744|ref|YP_003650231.1| - 0.0046 16.7 5.7 0.24 11.2 3.8 2.3 1 1 1 2 2 2 2 Double zinc ribbon PHF5 PF03660.9 gi|296242744|ref|YP_003650231.1| - 0.0083 16.1 6.1 0.064 13.3 2.3 2.3 1 1 1 2 2 2 1 PHF5-like protein zf-TFIIB PF13453.1 gi|296242744|ref|YP_003650231.1| - 0.017 14.2 3.0 2.2 7.5 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger RNHCP PF12647.2 gi|296242744|ref|YP_003650231.1| - 0.019 14.7 1.6 0.17 11.7 1.2 2.0 1 1 0 1 1 1 0 RNHCP domain DUF1610 PF07754.6 gi|296242744|ref|YP_003650231.1| - 0.027 14.5 8.2 0.27 11.3 1.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RING_2 PF13639.1 gi|296242744|ref|YP_003650231.1| - 0.041 13.7 7.4 0.15 11.8 5.1 1.9 1 1 0 1 1 1 0 Ring finger domain zf-Sec23_Sec24 PF04810.10 gi|296242744|ref|YP_003650231.1| - 0.067 12.7 3.9 7.1 6.2 0.0 3.0 3 0 0 3 3 3 0 Sec23/Sec24 zinc finger DUF4428 PF14471.1 gi|296242744|ref|YP_003650231.1| - 0.2 11.4 7.5 0.051 13.3 2.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) Zn_Tnp_IS1595 PF12760.2 gi|296242744|ref|YP_003650231.1| - 0.26 11.1 9.9 0.051 13.3 4.1 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|296242744|ref|YP_003650231.1| - 0.31 10.8 6.6 9.2 6.1 4.6 2.3 1 1 0 1 1 1 0 zinc-ribbons Dynactin_p62 PF05502.8 gi|296242744|ref|YP_003650231.1| - 0.44 9.2 3.6 0.56 8.9 2.5 1.1 1 0 0 1 1 1 0 Dynactin p62 family zf-Di19 PF05605.7 gi|296242744|ref|YP_003650231.1| - 0.51 10.5 5.2 1.5 9.0 0.4 2.8 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.7 gi|296242744|ref|YP_003650231.1| - 0.61 9.4 9.5 2.9 7.2 2.2 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding zf-CHY PF05495.7 gi|296242744|ref|YP_003650231.1| - 0.67 10.1 6.7 0.57 10.3 0.4 2.1 1 1 1 2 2 2 0 CHY zinc finger DUF2296 PF10058.4 gi|296242744|ref|YP_003650231.1| - 1.1 9.0 10.6 1.7 8.4 1.0 2.4 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) zf-RING_5 PF14634.1 gi|296242744|ref|YP_003650231.1| - 1.4 8.7 10.1 1.3e+02 2.3 0.4 2.8 1 1 1 2 2 2 0 zinc-RING finger domain PhnA_Zn_Ribbon PF08274.7 gi|296242744|ref|YP_003650231.1| - 1.4 8.7 10.7 3.7 7.3 2.7 2.6 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-LITAF-like PF10601.4 gi|296242744|ref|YP_003650231.1| - 1.6 8.6 7.8 0.7 9.7 0.3 2.7 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain C1_1 PF00130.17 gi|296242744|ref|YP_003650231.1| - 2.8 7.7 6.2 44 3.9 4.3 2.2 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1 PF03811.8 gi|296242744|ref|YP_003650231.1| - 3.2 7.3 5.8 8.1 6.0 0.2 3.1 3 1 0 3 3 3 0 InsA N-terminal domain CFC PF09443.5 gi|296242744|ref|YP_003650231.1| - 3.2 7.4 7.5 0.77 9.4 0.2 2.6 3 0 0 3 3 3 0 Cripto_Frl-1_Cryptic (CFC) zf-C3HC4_2 PF13923.1 gi|296242744|ref|YP_003650231.1| - 4.3 7.4 7.0 25 4.9 4.8 2.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-MYND PF01753.13 gi|296242744|ref|YP_003650231.1| - 6 6.8 9.5 47 3.9 6.5 2.3 1 1 1 2 2 2 0 MYND finger DUF1272 PF06906.6 gi|296242744|ref|YP_003650231.1| - 6.6 6.6 6.6 1.2e+02 2.6 4.5 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-Mss51 PF13824.1 gi|296242744|ref|YP_003650231.1| - 6.6 6.6 6.4 89 3.0 4.9 2.3 2 1 0 2 2 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.11 gi|296242744|ref|YP_003650231.1| - 7.4 6.3 18.2 19 5.0 2.4 3.2 2 1 1 3 3 3 0 HIT zinc finger Metallophos_2 PF12850.2 gi|296242745|ref|YP_003650232.1| - 6.3e-09 35.8 0.0 8.4e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|296242745|ref|YP_003650232.1| - 2.8e-06 26.8 0.0 6e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase RimK PF08443.6 gi|296242747|ref|YP_003650234.1| - 1.1e-30 106.5 0.0 1.5e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.11 gi|296242747|ref|YP_003650234.1| - 2.2e-12 46.4 0.0 3.1e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|296242747|ref|YP_003650234.1| - 7.4e-09 35.6 0.0 1.1e-08 35.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|296242747|ref|YP_003650234.1| - 7.4e-09 35.5 0.0 1.4e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|296242747|ref|YP_003650234.1| - 2.2e-06 26.6 0.0 1.9e-05 23.5 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Ins134_P3_kin PF05770.6 gi|296242747|ref|YP_003650234.1| - 6.1e-06 25.4 0.0 0.078 11.9 0.0 2.6 2 1 1 3 3 3 2 Inositol 1, 3, 4-trisphosphate 5/6-kinase DUF4343 PF14243.1 gi|296242747|ref|YP_003650234.1| - 0.014 15.2 0.1 0.033 14.0 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4343) Yip1 PF04893.12 gi|296242748|ref|YP_003650235.1| - 0.084 12.3 6.1 0.1 12.0 4.2 1.2 1 0 0 1 1 1 0 Yip1 domain DUF805 PF05656.9 gi|296242748|ref|YP_003650235.1| - 0.37 10.6 4.3 0.2 11.4 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF4131 PF13567.1 gi|296242748|ref|YP_003650235.1| - 2.6 7.4 7.7 1 8.7 1.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF2545 PF10810.3 gi|296242748|ref|YP_003650235.1| - 8.5 6.8 8.7 0.74 10.2 1.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2545) PNP_UDP_1 PF01048.15 gi|296242750|ref|YP_003650237.1| - 3.7e-46 156.9 0.0 4.3e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pribosyltran PF00156.22 gi|296242751|ref|YP_003650238.1| - 4.1e-19 68.5 0.0 5.4e-19 68.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Flavin_Reduct PF01613.13 gi|296242752|ref|YP_003650239.1| - 5.7e-29 100.9 0.0 6.8e-29 100.7 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain ATP-grasp_2 PF08442.5 gi|296242753|ref|YP_003650240.1| - 7e-60 201.8 0.3 1.1e-59 201.2 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|296242753|ref|YP_003650240.1| - 1.4e-20 73.4 0.9 5.3e-20 71.5 0.1 2.1 2 0 0 2 2 2 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|296242753|ref|YP_003650240.1| - 2.3e-09 36.8 2.7 7.7e-08 31.8 1.8 2.7 1 1 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|296242753|ref|YP_003650240.1| - 5.6e-05 22.7 0.5 0.00026 20.6 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|296242753|ref|YP_003650240.1| - 0.00015 21.5 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|296242753|ref|YP_003650240.1| - 0.0018 17.8 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain Peripla_BP_3 PF13377.1 gi|296242753|ref|YP_003650240.1| - 0.13 12.2 0.0 0.42 10.5 0.0 1.9 2 0 0 2 2 2 0 Periplasmic binding protein-like domain CoA_binding PF02629.14 gi|296242754|ref|YP_003650241.1| - 3.6e-29 101.1 2.9 4.6e-29 100.7 0.8 2.0 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.1 gi|296242754|ref|YP_003650241.1| - 1.1e-16 60.7 0.0 7.4e-16 57.9 0.0 2.0 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.14 gi|296242754|ref|YP_003650241.1| - 3.6e-16 59.1 0.0 5.7e-16 58.4 0.0 1.3 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.1 gi|296242754|ref|YP_003650241.1| - 4.3e-11 43.0 0.1 6.7e-09 35.9 0.0 2.4 3 0 0 3 3 3 1 CoA binding domain GFO_IDH_MocA PF01408.17 gi|296242754|ref|YP_003650241.1| - 0.0018 18.7 0.1 0.0067 16.9 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold FliJ PF02050.11 gi|296242755|ref|YP_003650242.1| - 0.00028 20.9 2.2 0.00056 19.9 0.3 1.9 2 0 0 2 2 2 1 Flagellar FliJ protein YqjK PF13997.1 gi|296242755|ref|YP_003650242.1| - 0.0051 16.9 0.2 2.3 8.4 0.2 2.2 2 0 0 2 2 2 1 YqjK-like protein Prefoldin PF02996.12 gi|296242755|ref|YP_003650242.1| - 0.0065 16.1 3.9 1.6 8.4 0.0 2.5 2 1 0 2 2 2 2 Prefoldin subunit COG6 PF06419.6 gi|296242755|ref|YP_003650242.1| - 0.0096 14.0 1.4 0.15 10.1 0.2 2.0 2 0 0 2 2 2 1 Conserved oligomeric complex COG6 DUF217 PF02697.9 gi|296242755|ref|YP_003650242.1| - 0.014 15.5 2.8 0.03 14.5 0.4 2.1 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 DUF1351 PF07083.6 gi|296242755|ref|YP_003650242.1| - 0.016 14.8 0.7 0.058 13.0 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1351) THOC7 PF05615.8 gi|296242755|ref|YP_003650242.1| - 0.03 14.6 2.0 0.03 14.6 1.4 1.7 2 0 0 2 2 2 0 Tho complex subunit 7 Sec5 PF15469.1 gi|296242755|ref|YP_003650242.1| - 0.051 13.2 1.5 0.08 12.6 0.3 1.7 1 1 1 2 2 2 0 Exocyst complex component Sec5 COG2 PF06148.6 gi|296242755|ref|YP_003650242.1| - 0.07 12.9 0.5 0.07 12.9 0.3 1.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF3571 PF12095.3 gi|296242755|ref|YP_003650242.1| - 0.071 13.3 0.2 0.24 11.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3571) Cep57_MT_bd PF06657.8 gi|296242755|ref|YP_003650242.1| - 0.072 13.0 1.0 2 8.4 0.1 2.5 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DNA_pol3_delta PF06144.8 gi|296242755|ref|YP_003650242.1| - 0.079 12.4 0.4 0.099 12.1 0.3 1.2 1 0 0 1 1 1 0 DNA polymerase III, delta subunit 5_3_exonuc PF01367.15 gi|296242755|ref|YP_003650242.1| - 0.081 13.1 0.4 0.16 12.2 0.3 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold DUF3837 PF12939.2 gi|296242755|ref|YP_003650242.1| - 0.11 12.4 0.3 0.25 11.3 0.1 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF3837) BLOC1_2 PF10046.4 gi|296242755|ref|YP_003650242.1| - 0.2 11.8 4.7 3.8 7.6 0.6 2.4 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4140 PF13600.1 gi|296242755|ref|YP_003650242.1| - 0.2 12.1 2.3 13 6.2 1.1 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DASH_Dad3 PF08656.5 gi|296242755|ref|YP_003650242.1| - 0.2 11.3 3.3 2.4 7.8 2.3 2.6 1 1 0 1 1 1 0 DASH complex subunit Dad3 DASH_Duo1 PF08651.5 gi|296242755|ref|YP_003650242.1| - 0.21 11.1 1.9 1.8 8.1 0.2 2.3 2 0 0 2 2 2 0 DASH complex subunit Duo1 Chordopox_A30L PF06015.7 gi|296242755|ref|YP_003650242.1| - 0.32 10.6 2.9 1.7 8.3 0.1 2.3 2 0 0 2 2 2 0 Chordopoxvirus A30L protein Nup54 PF13874.1 gi|296242755|ref|YP_003650242.1| - 0.35 10.5 3.1 0.13 11.9 0.3 1.6 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 DivIVA PF05103.8 gi|296242755|ref|YP_003650242.1| - 0.38 10.8 4.9 2.1 8.3 3.4 2.0 1 1 0 1 1 1 0 DivIVA protein Sipho_Gp157 PF05565.6 gi|296242755|ref|YP_003650242.1| - 0.41 10.2 4.6 0.39 10.2 0.4 2.4 1 1 1 2 2 2 0 Siphovirus Gp157 IncA PF04156.9 gi|296242755|ref|YP_003650242.1| - 0.48 9.9 3.8 2.2 7.8 1.4 2.0 2 0 0 2 2 2 0 IncA protein Syntaxin PF00804.20 gi|296242755|ref|YP_003650242.1| - 0.56 10.4 3.2 15 5.7 0.6 2.2 2 0 0 2 2 2 0 Syntaxin Mnd1 PF03962.10 gi|296242755|ref|YP_003650242.1| - 0.89 9.1 3.3 1.7 8.3 2.2 1.6 1 1 0 1 1 1 0 Mnd1 family DUF2408 PF10303.4 gi|296242755|ref|YP_003650242.1| - 2.2 8.4 4.5 3 7.9 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) Osmo_CC PF08946.5 gi|296242755|ref|YP_003650242.1| - 2.5 8.2 5.3 8.7 6.4 0.9 2.6 2 0 0 2 2 2 0 Osmosensory transporter coiled coil NYD-SP28 PF14772.1 gi|296242755|ref|YP_003650242.1| - 2.5 8.2 6.3 1.2 9.2 0.8 2.5 2 1 1 3 3 3 0 Sperm tail DUF4164 PF13747.1 gi|296242755|ref|YP_003650242.1| - 3.6 7.7 8.3 1.2 9.3 2.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) RRF PF01765.14 gi|296242755|ref|YP_003650242.1| - 3.9 6.9 6.8 2.7 7.4 2.0 2.1 1 1 1 2 2 2 0 Ribosome recycling factor TMF_DNA_bd PF12329.3 gi|296242755|ref|YP_003650242.1| - 5.3 6.9 10.7 0.48 10.2 3.3 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Pyrophosphatase PF00719.14 gi|296242756|ref|YP_003650243.1| - 9.3e-61 203.8 0.0 1.1e-60 203.6 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase ATP-grasp_3 PF02655.9 gi|296242757|ref|YP_003650244.1| - 0.049 13.5 0.0 0.05 13.4 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain KaiC PF06745.8 gi|296242758|ref|YP_003650245.1| - 2.7e-37 128.0 0.0 4.5e-37 127.3 0.0 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|296242758|ref|YP_003650245.1| - 4.4e-13 49.0 0.0 2.5e-12 46.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|296242758|ref|YP_003650245.1| - 7.1e-07 27.9 0.3 2.7e-06 25.9 0.2 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|296242758|ref|YP_003650245.1| - 5.5e-06 25.9 0.1 1.3e-05 24.6 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|296242758|ref|YP_003650245.1| - 1.6e-05 24.7 0.4 4.8e-05 23.2 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|296242758|ref|YP_003650245.1| - 3.7e-05 24.5 0.0 0.00011 22.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|296242758|ref|YP_003650245.1| - 6.6e-05 22.9 0.0 0.00014 21.8 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|296242758|ref|YP_003650245.1| - 0.00012 22.2 0.0 0.00037 20.6 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|296242758|ref|YP_003650245.1| - 0.00012 21.7 0.0 0.00036 20.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|296242758|ref|YP_003650245.1| - 0.00013 22.3 0.3 0.00045 20.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|296242758|ref|YP_003650245.1| - 0.0003 20.9 0.0 0.00069 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|296242758|ref|YP_003650245.1| - 0.00042 20.1 0.0 0.00081 19.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_33 PF13671.1 gi|296242758|ref|YP_003650245.1| - 0.00048 20.0 0.0 0.00093 19.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|296242758|ref|YP_003650245.1| - 0.00052 19.0 0.0 0.0034 16.3 0.0 2.1 2 0 0 2 2 2 1 Rad51 CbiA PF01656.18 gi|296242758|ref|YP_003650245.1| - 0.00063 19.2 0.0 0.0012 18.3 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|296242758|ref|YP_003650245.1| - 0.0011 18.8 0.1 0.0055 16.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|296242758|ref|YP_003650245.1| - 0.0013 18.4 0.1 0.0042 16.6 0.1 1.8 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|296242758|ref|YP_003650245.1| - 0.0013 18.0 0.1 0.0045 16.2 0.0 1.8 1 1 1 2 2 2 1 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|296242758|ref|YP_003650245.1| - 0.0017 17.4 0.0 0.0027 16.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.10 gi|296242758|ref|YP_003650245.1| - 0.0031 16.4 0.0 0.0061 15.4 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|296242758|ref|YP_003650245.1| - 0.0031 16.9 0.0 0.0052 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain Zot PF05707.7 gi|296242758|ref|YP_003650245.1| - 0.0036 16.7 0.0 0.0061 16.0 0.0 1.5 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) ABC_tran PF00005.22 gi|296242758|ref|YP_003650245.1| - 0.004 17.4 0.0 0.0093 16.2 0.0 1.6 1 0 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|296242758|ref|YP_003650245.1| - 0.0047 16.6 0.0 0.0093 15.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B 6PF2K PF01591.13 gi|296242758|ref|YP_003650245.1| - 0.0063 15.6 0.0 0.012 14.6 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase NACHT PF05729.7 gi|296242758|ref|YP_003650245.1| - 0.0084 15.7 0.2 0.027 14.1 0.1 1.9 1 1 0 1 1 1 1 NACHT domain RecA PF00154.16 gi|296242758|ref|YP_003650245.1| - 0.009 15.1 0.0 0.019 14.0 0.0 1.4 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_5 PF07728.9 gi|296242758|ref|YP_003650245.1| - 0.0098 15.6 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_35 PF14516.1 gi|296242758|ref|YP_003650245.1| - 0.013 14.1 0.0 0.023 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.7 gi|296242758|ref|YP_003650245.1| - 0.02 13.9 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.11 gi|296242758|ref|YP_003650245.1| - 0.02 14.1 0.0 0.036 13.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein NB-ARC PF00931.17 gi|296242758|ref|YP_003650245.1| - 0.028 13.2 0.1 0.056 12.2 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain cobW PF02492.14 gi|296242758|ref|YP_003650245.1| - 0.028 13.8 0.1 0.059 12.8 0.1 1.7 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.18 gi|296242758|ref|YP_003650245.1| - 0.041 13.8 0.4 0.14 12.1 0.1 2.0 2 1 0 2 2 2 0 50S ribosome-binding GTPase ATP-synt_ab PF00006.20 gi|296242758|ref|YP_003650245.1| - 0.079 12.4 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Miro PF08477.8 gi|296242758|ref|YP_003650245.1| - 0.13 12.8 0.0 0.26 11.7 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein SRP54 PF00448.17 gi|296242758|ref|YP_003650245.1| - 0.13 11.6 0.1 0.24 10.8 0.0 1.5 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Rubrerythrin PF02915.12 gi|296242759|ref|YP_003650246.1| - 0.0083 16.4 0.2 0.026 14.8 0.1 1.8 1 1 0 1 1 1 1 Rubrerythrin Oxidored_q1 PF00361.15 gi|296242760|ref|YP_003650247.1| - 1.1e-37 129.8 11.5 1.1e-37 129.8 7.9 2.3 2 1 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|296242760|ref|YP_003650247.1| - 1.3e-08 34.2 5.8 1.3e-08 34.2 4.0 3.0 3 1 1 4 4 4 1 NADH dehydrogenase I, subunit N related protein Complex1_30kDa PF00329.14 gi|296242761|ref|YP_003650248.1| - 9.5e-29 99.6 0.0 1.6e-28 98.9 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|296242761|ref|YP_003650248.1| - 1.3e-08 34.4 0.0 2.3e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF35_N PF12172.3 gi|296242761|ref|YP_003650248.1| - 0.022 14.6 1.2 0.087 12.7 0.1 2.3 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Reovirus_L2 PF06016.6 gi|296242761|ref|YP_003650248.1| - 0.045 10.7 0.0 0.084 9.8 0.0 1.3 2 0 0 2 2 2 0 Reovirus core-spike protein lambda-2 (L2) Complex1_49kDa PF00346.14 gi|296242762|ref|YP_003650249.1| - 2.3e-55 187.5 0.0 4.7e-45 153.7 0.0 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|296242762|ref|YP_003650249.1| - 0.0036 16.1 0.0 0.0066 15.2 0.0 1.4 1 0 0 1 1 1 1 Nickel-dependent hydrogenase Fer4 PF00037.22 gi|296242763|ref|YP_003650250.1| - 1.7e-15 55.8 11.1 3.2e-09 36.0 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|296242763|ref|YP_003650250.1| - 4.2e-11 42.9 36.1 2.9e-07 30.6 9.8 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296242763|ref|YP_003650250.1| - 4.8e-11 42.2 9.4 7.7e-11 41.6 6.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|296242763|ref|YP_003650250.1| - 5e-11 42.2 8.5 1.7e-05 24.5 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|296242763|ref|YP_003650250.1| - 1.4e-10 41.3 13.7 2.2e-10 40.7 9.5 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|296242763|ref|YP_003650250.1| - 3.6e-10 39.1 10.2 5.2e-05 22.9 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|296242763|ref|YP_003650250.1| - 6.6e-10 39.5 3.2 0.00042 20.9 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.2 gi|296242763|ref|YP_003650250.1| - 4.3e-09 35.8 14.6 1.9e-05 24.2 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296242763|ref|YP_003650250.1| - 3.4e-08 33.3 11.4 6.1e-08 32.5 7.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296242763|ref|YP_003650250.1| - 2.7e-06 27.8 6.9 0.0024 18.4 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|296242763|ref|YP_003650250.1| - 5.2e-05 23.2 12.8 0.019 15.2 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|296242763|ref|YP_003650250.1| - 0.00013 22.2 14.6 0.01 16.2 3.1 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|296242763|ref|YP_003650250.1| - 0.0004 20.6 14.2 0.041 14.2 10.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|296242763|ref|YP_003650250.1| - 0.00072 19.9 21.9 0.018 15.5 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|296242763|ref|YP_003650250.1| - 0.018 14.9 7.0 0.057 13.3 4.4 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|296242763|ref|YP_003650250.1| - 0.021 15.1 14.1 0.12 12.7 0.8 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain MrpF_PhaF PF04066.8 gi|296242764|ref|YP_003650251.1| - 0.00074 19.7 6.0 0.00074 19.7 4.2 2.5 2 1 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) NKAIN PF05640.9 gi|296242764|ref|YP_003650251.1| - 0.47 9.3 3.5 1.2 8.0 0.9 1.9 1 1 1 2 2 2 0 Na,K-Atpase Interacting protein TspO_MBR PF03073.10 gi|296242764|ref|YP_003650251.1| - 0.49 9.9 5.3 0.59 9.6 3.7 1.1 1 0 0 1 1 1 0 TspO/MBR family DUF202 PF02656.10 gi|296242764|ref|YP_003650251.1| - 3.4 7.9 4.9 16 5.8 3.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PhaG_MnhG_YufB PF03334.9 gi|296242765|ref|YP_003650252.1| - 1.6e-15 56.8 7.4 2.1e-15 56.5 5.1 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit 7TMR-DISM_7TM PF07695.6 gi|296242765|ref|YP_003650252.1| - 0.22 11.1 7.1 0.04 13.6 1.7 1.8 1 1 1 2 2 2 0 7TM diverse intracellular signalling DUF1469 PF07332.6 gi|296242765|ref|YP_003650252.1| - 0.92 9.2 7.6 0.54 9.9 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) DUF4040 PF13244.1 gi|296242766|ref|YP_003650253.1| - 5.7e-13 48.6 3.8 5.7e-13 48.6 2.6 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) EamA PF00892.15 gi|296242766|ref|YP_003650253.1| - 0.79 9.7 10.0 1.2 9.1 7.0 1.3 1 1 0 1 1 1 0 EamA-like transporter family ABC2_membrane_2 PF12679.2 gi|296242766|ref|YP_003650253.1| - 2.5 6.8 9.0 2.9 6.6 6.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MnhB PF04039.8 gi|296242767|ref|YP_003650254.1| - 4.6e-16 59.0 11.7 4.6e-16 59.0 8.1 2.2 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.4 gi|296242767|ref|YP_003650254.1| - 0.021 14.1 0.1 0.056 12.7 0.1 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2106) Oxidored_q2 PF00420.19 gi|296242768|ref|YP_003650255.1| - 8.7e-17 60.5 2.5 1.5e-16 59.7 1.7 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF3119 PF11317.3 gi|296242768|ref|YP_003650255.1| - 0.064 13.2 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3119) MNHE PF01899.11 gi|296242769|ref|YP_003650256.1| - 2.1e-37 128.1 0.7 2.4e-37 127.9 0.5 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit ABC2_membrane_4 PF12730.2 gi|296242769|ref|YP_003650256.1| - 0.22 10.6 7.0 0.32 10.1 4.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein COX4_pro PF03626.9 gi|296242770|ref|YP_003650257.1| - 1.5 8.9 6.7 5.3 7.2 0.4 2.3 2 0 0 2 2 2 0 Prokaryotic Cytochrome C oxidase subunit IV ATP-synt_8 PF00895.15 gi|296242770|ref|YP_003650257.1| - 1.8 8.8 4.7 18 5.6 1.9 2.2 2 0 0 2 2 2 0 ATP synthase protein 8 DUF3311 PF11755.3 gi|296242770|ref|YP_003650257.1| - 6.4 6.3 7.3 9.4 5.8 3.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3311) NADHdh PF00146.16 gi|296242771|ref|YP_003650258.1| - 2.5e-32 112.2 18.9 2.8e-32 112.0 13.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DS PF01916.12 gi|296242772|ref|YP_003650259.1| - 3.7e-60 203.5 0.0 5.5e-60 203.0 0.0 1.2 1 1 0 1 1 1 1 Deoxyhypusine synthase Tox-MPTase3 PF15639.1 gi|296242772|ref|YP_003650259.1| - 0.048 13.4 0.2 10 5.8 0.0 2.3 1 1 1 2 2 2 0 Metallopeptidase toxin 3 Hydant_A_N PF05378.8 gi|296242772|ref|YP_003650259.1| - 0.15 11.5 0.0 0.36 10.3 0.0 1.6 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region DUF973 PF06157.6 gi|296242773|ref|YP_003650260.1| - 2.6e-12 46.3 32.7 5e-12 45.3 22.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Claudin_2 PF13903.1 gi|296242773|ref|YP_003650260.1| - 0.0002 21.0 15.6 0.0019 17.9 4.7 2.1 1 1 1 2 2 2 2 PMP-22/EMP/MP20/Claudin tight junction TctB PF07331.6 gi|296242773|ref|YP_003650260.1| - 0.97 9.0 31.3 0.046 13.3 13.4 2.4 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF996 PF06195.8 gi|296242773|ref|YP_003650260.1| - 6.4 6.7 37.9 8.1 6.4 3.3 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF996) MpPF26 PF07666.6 gi|296242773|ref|YP_003650260.1| - 8.5 6.2 30.0 1.5e+02 2.2 18.1 2.7 1 1 1 2 2 2 0 M penetrans paralogue family 26 Endonuclease_5 PF04493.9 gi|296242778|ref|YP_003650265.1| - 5.9e-48 162.9 0.1 7.4e-48 162.6 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V DUF2204 PF09970.4 gi|296242779|ref|YP_003650266.1| - 4.1e-52 176.2 0.0 4.6e-52 176.1 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) Ribosomal_L40e PF01020.12 gi|296242780|ref|YP_003650267.1| - 9.4e-06 25.1 4.1 1e-05 25.0 2.9 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|296242780|ref|YP_003650267.1| - 0.00022 20.5 2.9 0.00029 20.2 2.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.13 gi|296242780|ref|YP_003650267.1| - 0.0005 19.1 2.2 0.00075 18.5 1.5 1.3 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|296242780|ref|YP_003650267.1| - 0.00051 19.1 3.6 0.00065 18.8 2.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|296242780|ref|YP_003650267.1| - 0.0012 18.6 0.9 0.0013 18.5 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon CpXC PF14353.1 gi|296242780|ref|YP_003650267.1| - 0.058 13.3 0.2 1.6 8.7 0.0 2.0 2 0 0 2 2 2 0 CpXC protein zf-DHHC PF01529.15 gi|296242780|ref|YP_003650267.1| - 0.15 11.4 0.6 0.16 11.3 0.4 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Rpr2 PF04032.11 gi|296242780|ref|YP_003650267.1| - 0.19 11.6 2.2 0.25 11.2 1.5 1.3 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-MYND PF01753.13 gi|296242780|ref|YP_003650267.1| - 0.5 10.2 3.5 0.69 9.8 2.4 1.2 1 0 0 1 1 1 0 MYND finger DNA_RNApol_7kD PF03604.8 gi|296242780|ref|YP_003650267.1| - 0.54 9.7 5.7 1.5 8.3 0.2 2.4 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|296242780|ref|YP_003650267.1| - 0.69 9.7 4.4 3.3 7.6 3.2 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-CCHC PF00098.18 gi|296242780|ref|YP_003650267.1| - 0.93 9.5 5.0 11 6.1 0.1 2.2 2 0 0 2 2 2 0 Zinc knuckle zf-C2H2_3 PF13878.1 gi|296242780|ref|YP_003650267.1| - 1.4 8.5 5.1 1.3 8.6 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO RNA_POL_M_15KD PF02150.11 gi|296242780|ref|YP_003650267.1| - 1.7 8.3 5.4 2.9 7.6 0.1 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-CCHC_5 PF14787.1 gi|296242780|ref|YP_003650267.1| - 6.1 6.4 9.0 9.2 5.8 1.6 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Hexapep PF00132.19 gi|296242781|ref|YP_003650268.1| - 0.047 13.2 0.6 2.3 7.8 0.3 2.8 2 1 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) YtpI PF14007.1 gi|296242782|ref|YP_003650269.1| - 0.0014 18.4 0.5 0.0017 18.2 0.3 1.1 1 0 0 1 1 1 1 YtpI-like protein COPI_assoc PF08507.5 gi|296242782|ref|YP_003650269.1| - 0.026 14.1 4.5 0.03 13.9 3.1 1.1 1 0 0 1 1 1 0 COPI associated protein DUF308 PF03729.8 gi|296242782|ref|YP_003650269.1| - 0.033 14.1 11.7 0.066 13.2 8.1 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF4418 PF14387.1 gi|296242782|ref|YP_003650269.1| - 0.06 13.0 2.5 0.07 12.8 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF3096 PF11295.3 gi|296242782|ref|YP_003650269.1| - 0.098 12.1 17.1 0.3 10.6 11.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3096) DUF2892 PF11127.3 gi|296242782|ref|YP_003650269.1| - 0.35 10.7 3.9 0.47 10.3 2.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) SdpI PF13630.1 gi|296242782|ref|YP_003650269.1| - 0.47 10.1 6.1 0.6 9.8 4.2 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family CRPA PF05745.6 gi|296242782|ref|YP_003650269.1| - 0.6 9.9 2.8 0.59 9.9 1.9 1.1 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) VirB3 PF05101.8 gi|296242782|ref|YP_003650269.1| - 0.66 9.9 3.5 0.84 9.6 2.4 1.1 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein Cg6151-P PF10233.4 gi|296242782|ref|YP_003650269.1| - 4.8 7.1 8.1 3.1 7.7 0.5 1.7 1 1 1 2 2 2 0 Uncharacterized conserved protein CG6151-P DUF4233 PF14017.1 gi|296242783|ref|YP_003650270.1| - 0.13 12.2 5.4 0.22 11.4 3.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) UPF0104 PF03706.8 gi|296242783|ref|YP_003650270.1| - 0.73 9.0 10.8 1.3 8.2 7.0 1.7 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0104) MspA PF09203.6 gi|296242784|ref|YP_003650271.1| - 0.081 12.3 0.0 0.088 12.2 0.0 1.1 1 0 0 1 1 1 0 MspA Xan_ur_permease PF00860.15 gi|296242786|ref|YP_003650273.1| - 0.02 13.3 0.6 0.021 13.3 0.4 1.0 1 0 0 1 1 1 0 Permease family DUF3955 PF13127.1 gi|296242786|ref|YP_003650273.1| - 0.13 11.8 1.3 0.13 11.8 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3955) Translin PF01997.11 gi|296242787|ref|YP_003650274.1| - 3.8e-32 111.5 0.0 4.9e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Translin family Glycos_transf_1 PF00534.15 gi|296242788|ref|YP_003650275.1| - 2.5e-26 92.1 0.0 4.4e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|296242788|ref|YP_003650275.1| - 2.7e-09 36.9 0.0 3.2e-07 30.2 0.0 3.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|296242788|ref|YP_003650275.1| - 3.7e-09 36.8 0.0 6e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|296242788|ref|YP_003650275.1| - 0.00042 20.5 0.0 0.0012 19.0 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 CARD PF00619.16 gi|296242788|ref|YP_003650275.1| - 0.13 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Caspase recruitment domain Lactamase_B_2 PF12706.2 gi|296242789|ref|YP_003650276.1| - 3.3e-07 30.0 0.0 1.4e-06 28.0 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|296242789|ref|YP_003650276.1| - 2.6e-05 23.9 0.1 8e-05 22.3 0.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily DRMBL PF07522.9 gi|296242789|ref|YP_003650276.1| - 0.00028 20.8 0.0 0.0014 18.6 0.0 2.0 2 0 0 2 2 2 1 DNA repair metallo-beta-lactamase RMMBL PF07521.7 gi|296242789|ref|YP_003650276.1| - 0.088 12.6 0.0 0.32 10.8 0.0 2.0 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase RHH_1 PF01402.16 gi|296242790|ref|YP_003650277.1| - 0.00061 19.5 0.1 0.00061 19.5 0.1 2.7 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family BLOC1_2 PF10046.4 gi|296242790|ref|YP_003650277.1| - 0.0021 18.1 1.5 0.0044 17.1 1.0 1.5 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 RHH_3 PF12651.2 gi|296242790|ref|YP_003650277.1| - 0.012 15.3 1.3 0.033 13.9 0.1 2.4 2 0 0 2 2 2 0 Ribbon-helix-helix domain DUF217 PF02697.9 gi|296242790|ref|YP_003650277.1| - 0.024 14.8 0.4 0.024 14.8 0.2 2.7 2 1 1 3 3 3 0 Uncharacterized ACR, COG1753 DUF3158 PF11358.3 gi|296242790|ref|YP_003650277.1| - 0.029 13.8 0.4 0.078 12.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3158) FlaC_arch PF05377.6 gi|296242790|ref|YP_003650277.1| - 0.056 13.3 0.6 0.056 13.3 0.4 2.3 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF1043 PF06295.7 gi|296242790|ref|YP_003650277.1| - 0.064 12.8 0.5 0.19 11.3 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) UPF0184 PF03670.8 gi|296242790|ref|YP_003650277.1| - 0.074 13.2 0.2 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) Zw10 PF06248.8 gi|296242790|ref|YP_003650277.1| - 0.096 10.8 1.1 0.1 10.7 0.8 1.1 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 NPV_P10 PF05531.7 gi|296242790|ref|YP_003650277.1| - 0.1 12.8 0.2 0.26 11.5 0.1 1.8 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein RasGAP_C PF03836.10 gi|296242790|ref|YP_003650277.1| - 0.14 11.8 2.1 0.34 10.5 1.5 1.8 1 1 0 1 1 1 0 RasGAP C-terminus DUF892 PF05974.7 gi|296242790|ref|YP_003650277.1| - 0.19 11.5 1.1 8.7 6.1 0.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF892) Gon7 PF08738.5 gi|296242790|ref|YP_003650277.1| - 0.25 11.3 1.4 0.76 9.7 0.2 2.1 1 1 1 2 2 2 0 Gon7 family Phasin PF05597.6 gi|296242790|ref|YP_003650277.1| - 0.5 10.1 5.6 0.16 11.7 2.1 1.5 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF972 PF06156.8 gi|296242790|ref|YP_003650277.1| - 2.6 8.4 5.0 8 6.8 1.2 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF972) TatD_DNase PF01026.16 gi|296242791|ref|YP_003650278.1| - 5.4e-24 84.7 0.0 6.3e-24 84.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Prok-RING_2 PF14445.1 gi|296242792|ref|YP_003650279.1| - 0.021 14.7 22.4 0.099 12.6 5.9 2.5 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 zf-B_box PF00643.19 gi|296242792|ref|YP_003650279.1| - 0.023 14.5 26.6 0.16 11.8 6.9 3.9 3 1 1 4 4 4 0 B-box zinc finger DZR PF12773.2 gi|296242792|ref|YP_003650279.1| - 0.28 11.0 22.8 0.57 10.0 0.7 3.6 2 1 0 2 2 2 0 Double zinc ribbon FYVE PF01363.16 gi|296242792|ref|YP_003650279.1| - 0.64 9.9 32.2 1.5e+04 -7.2 22.3 3.8 1 1 0 1 1 1 0 FYVE zinc finger AIRS_C PF02769.17 gi|296242793|ref|YP_003650280.1| - 1.2e-16 61.0 0.1 1.9e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|296242793|ref|YP_003650280.1| - 5.3e-10 39.4 0.1 1.2e-09 38.2 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF3236 PF11576.3 gi|296242793|ref|YP_003650280.1| - 0.03 13.7 0.3 1.1 8.6 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3236) Orthopox_B11R PF07033.6 gi|296242793|ref|YP_003650280.1| - 0.67 9.4 2.4 9.7 5.7 0.1 2.9 3 0 0 3 3 3 0 Orthopoxvirus B11R protein DUF3782 PF12644.2 gi|296242794|ref|YP_003650281.1| - 0.0011 18.7 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) Snf7 PF03357.16 gi|296242795|ref|YP_003650282.1| - 0.0013 18.1 0.2 0.0029 17.0 0.1 1.7 1 1 0 1 1 1 1 Snf7 MatP PF06303.7 gi|296242795|ref|YP_003650282.1| - 0.0014 18.5 0.5 0.0026 17.6 0.3 1.4 1 0 0 1 1 1 1 Organiser of macrodomain of Terminus of chromosome Peptidase_C37 PF05416.7 gi|296242795|ref|YP_003650282.1| - 0.0046 15.3 0.1 0.0046 15.3 0.1 1.1 1 0 0 1 1 1 1 Southampton virus-type processing peptidase TBSV_P22 PF03558.8 gi|296242795|ref|YP_003650282.1| - 0.039 13.3 0.0 0.051 12.9 0.0 1.1 1 0 0 1 1 1 0 TBSV core protein P21/P22 Transcrip_act PF04949.8 gi|296242795|ref|YP_003650282.1| - 0.16 11.5 2.7 0.36 10.4 1.9 1.5 1 1 0 1 1 1 0 Transcriptional activator PhoU PF01895.14 gi|296242795|ref|YP_003650282.1| - 0.28 11.6 2.8 1.6 9.2 1.0 2.4 2 1 0 2 2 2 0 PhoU domain DUF969 PF06149.7 gi|296242796|ref|YP_003650283.1| - 0.066 12.4 0.0 0.075 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF969) CutA1 PF03091.10 gi|296242797|ref|YP_003650284.1| - 5.7e-38 128.6 1.1 6.2e-38 128.5 0.8 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein AsnC_trans_reg PF01037.16 gi|296242797|ref|YP_003650284.1| - 0.088 12.5 0.1 0.25 11.0 0.0 1.7 2 0 0 2 2 2 0 AsnC family SseB_C PF14581.1 gi|296242797|ref|YP_003650284.1| - 0.09 12.6 0.0 0.093 12.5 0.0 1.2 1 0 0 1 1 1 0 SseB protein C-terminal domain GGDN PF05165.7 gi|296242799|ref|YP_003650286.1| - 0.00034 19.7 0.0 0.045 12.7 0.0 2.1 2 0 0 2 2 2 2 GGDN family SIS PF01380.17 gi|296242800|ref|YP_003650287.1| - 6.7e-41 138.9 0.1 1.7e-26 92.3 0.3 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|296242800|ref|YP_003650287.1| - 1.2e-16 60.9 0.0 2.3e-16 59.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|296242800|ref|YP_003650287.1| - 8.4e-13 48.1 0.0 1.7e-12 47.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|296242800|ref|YP_003650287.1| - 5.7e-12 45.0 0.0 8.2e-09 34.6 0.0 2.5 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|296242800|ref|YP_003650287.1| - 3.2e-07 29.2 0.0 5.1e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|296242800|ref|YP_003650287.1| - 2.3e-05 24.1 0.6 0.00011 21.9 0.1 2.3 2 0 0 2 2 2 1 SIS domain DUF4350 PF14258.1 gi|296242800|ref|YP_003650287.1| - 0.03 14.5 0.1 8.9 6.6 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) ParA PF10609.4 gi|296242800|ref|YP_003650287.1| - 0.15 11.9 0.8 1.1 9.1 0.0 2.4 3 0 0 3 3 3 0 ParA/MinD ATPase like tRNA-synt_1b PF00579.20 gi|296242801|ref|YP_003650288.1| - 1.4e-46 159.0 0.0 1.9e-46 158.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|296242801|ref|YP_003650288.1| - 0.055 12.1 0.0 0.48 9.0 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) OMPdecase PF00215.19 gi|296242802|ref|YP_003650289.1| - 5.1e-20 71.8 1.2 6.2e-20 71.5 0.9 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.14 gi|296242802|ref|YP_003650289.1| - 0.00027 20.1 0.2 0.00034 19.7 0.1 1.4 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|296242802|ref|YP_003650289.1| - 0.00031 20.0 0.2 0.00055 19.2 0.1 1.4 1 1 0 1 1 1 1 PcrB family NanE PF04131.9 gi|296242802|ref|YP_003650289.1| - 0.0036 16.3 0.2 0.018 13.9 0.0 2.0 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|296242802|ref|YP_003650289.1| - 0.0054 16.0 0.1 0.0075 15.5 0.0 1.4 1 1 0 1 1 1 1 Histidine biosynthesis protein QRPTase_C PF01729.14 gi|296242802|ref|YP_003650289.1| - 0.021 14.3 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF556 PF04476.8 gi|296242802|ref|YP_003650289.1| - 0.046 12.9 1.8 0.4 9.8 0.0 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF556) FMN_dh PF01070.13 gi|296242802|ref|YP_003650289.1| - 0.12 11.2 0.4 0.29 9.9 0.3 1.7 1 1 0 1 1 1 0 FMN-dependent dehydrogenase 5-FTHF_cyc-lig PF01812.15 gi|296242803|ref|YP_003650290.1| - 4.8e-31 107.9 0.0 5.7e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family polyprenyl_synt PF00348.12 gi|296242804|ref|YP_003650291.1| - 2.6e-44 151.0 0.0 2.5e-25 88.8 0.0 2.1 2 0 0 2 2 2 2 Polyprenyl synthetase DPM3 PF08285.6 gi|296242805|ref|YP_003650292.1| - 0.00026 20.7 0.3 0.0003 20.5 0.2 1.1 1 0 0 1 1 1 1 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF3816 PF12822.2 gi|296242805|ref|YP_003650292.1| - 0.063 13.1 3.3 0.071 12.9 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Got1 PF04178.7 gi|296242805|ref|YP_003650292.1| - 0.07 13.2 6.2 0.094 12.8 4.3 1.1 1 0 0 1 1 1 0 Got1/Sft2-like family EmrE PF13536.1 gi|296242805|ref|YP_003650292.1| - 0.086 13.0 3.0 0.11 12.6 2.1 1.2 1 0 0 1 1 1 0 Multidrug resistance efflux transporter DUF1469 PF07332.6 gi|296242805|ref|YP_003650292.1| - 0.088 12.5 0.6 0.19 11.4 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Pyridox_ox_2 PF12900.2 gi|296242805|ref|YP_003650292.1| - 0.1 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase UPF0182 PF03699.8 gi|296242805|ref|YP_003650292.1| - 0.11 10.3 0.3 0.12 10.2 0.2 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) PsbI PF02532.9 gi|296242805|ref|YP_003650292.1| - 0.93 9.1 4.5 2.4 7.8 3.1 1.7 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) DUF504 PF04457.7 gi|296242806|ref|YP_003650293.1| - 6.7e-13 48.5 1.4 1e-12 47.9 1.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF504) ELFV_dehydrog PF00208.16 gi|296242807|ref|YP_003650294.1| - 1.4e-74 250.7 0.8 1.8e-74 250.4 0.6 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|296242807|ref|YP_003650294.1| - 4.7e-47 158.8 0.0 7.6e-47 158.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|296242807|ref|YP_003650294.1| - 0.00038 19.6 0.2 0.00073 18.7 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|296242807|ref|YP_003650294.1| - 0.0017 17.9 1.6 0.0065 16.0 1.1 2.0 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain BcrAD_BadFG PF01869.15 gi|296242807|ref|YP_003650294.1| - 0.0086 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Bac_GDH PF05088.7 gi|296242807|ref|YP_003650294.1| - 0.061 10.7 0.0 0.085 10.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase AdoHcyase_NAD PF00670.16 gi|296242807|ref|YP_003650294.1| - 0.29 10.9 1.7 0.46 10.2 0.2 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Isochorismatase PF00857.15 gi|296242808|ref|YP_003650295.1| - 4.8e-45 153.6 0.0 5.4e-45 153.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family AAA_25 PF13481.1 gi|296242808|ref|YP_003650295.1| - 0.02 14.2 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|296242810|ref|YP_003650297.1| - 4.4e-21 76.0 1.1 3e-13 50.4 0.7 2.1 1 1 1 2 2 2 2 AAA domain ABC_tran PF00005.22 gi|296242810|ref|YP_003650297.1| - 6.8e-21 75.0 0.0 9.7e-21 74.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_15 PF13175.1 gi|296242810|ref|YP_003650297.1| - 9.7e-12 44.6 0.0 6e-08 32.1 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|296242810|ref|YP_003650297.1| - 1.3e-06 27.8 0.1 3.2e-05 23.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|296242810|ref|YP_003650297.1| - 0.00021 21.6 0.1 0.00038 20.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|296242810|ref|YP_003650297.1| - 0.0022 17.4 0.0 0.0043 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|296242810|ref|YP_003650297.1| - 0.0027 17.9 0.1 0.026 14.7 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|296242810|ref|YP_003650297.1| - 0.0033 17.0 0.3 0.012 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|296242810|ref|YP_003650297.1| - 0.0034 17.2 0.1 0.013 15.3 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|296242810|ref|YP_003650297.1| - 0.007 16.0 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain ABC_ATPase PF09818.4 gi|296242810|ref|YP_003650297.1| - 0.014 14.0 0.0 0.022 13.3 0.0 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|296242810|ref|YP_003650297.1| - 0.016 14.9 0.0 0.022 14.4 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_17 PF13207.1 gi|296242810|ref|YP_003650297.1| - 0.018 15.8 0.0 0.029 15.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|296242810|ref|YP_003650297.1| - 0.022 14.7 0.0 0.044 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain HEPN PF05168.9 gi|296242810|ref|YP_003650297.1| - 0.028 14.3 0.0 9.1 6.1 0.0 2.2 2 0 0 2 2 2 0 HEPN domain NTPase_1 PF03266.10 gi|296242810|ref|YP_003650297.1| - 0.031 13.9 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_22 PF13401.1 gi|296242810|ref|YP_003650297.1| - 0.033 14.3 0.3 0.2 11.7 0.2 2.1 1 1 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|296242810|ref|YP_003650297.1| - 0.044 13.4 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|296242810|ref|YP_003650297.1| - 0.056 12.8 0.0 0.096 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|296242810|ref|YP_003650297.1| - 0.073 11.9 0.1 0.19 10.6 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein MutS_V PF00488.16 gi|296242810|ref|YP_003650297.1| - 0.086 12.2 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 MutS domain V Zeta_toxin PF06414.7 gi|296242810|ref|YP_003650297.1| - 0.12 11.4 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.7 gi|296242810|ref|YP_003650297.1| - 0.15 11.7 0.3 0.99 9.0 0.0 2.1 2 0 0 2 2 2 0 NACHT domain FecCD PF01032.13 gi|296242811|ref|YP_003650298.1| - 4.2e-62 209.7 32.7 5e-62 209.5 22.7 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|296242812|ref|YP_003650299.1| - 2e-23 82.7 0.0 2.9e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TP_methylase PF00590.15 gi|296242813|ref|YP_003650300.1| - 1.1e-19 71.0 0.1 1.4e-19 70.6 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF2029 PF09594.5 gi|296242814|ref|YP_003650301.1| - 1.1e-07 31.6 21.6 2.5e-07 30.4 15.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2029) AA_kinase PF00696.23 gi|296242815|ref|YP_003650302.1| - 6.7e-30 104.3 0.0 7.7e-30 104.1 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF1652 PF07865.6 gi|296242817|ref|YP_003650304.1| - 0.0015 18.1 0.1 0.0017 17.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1652) Radical_SAM PF04055.16 gi|296242818|ref|YP_003650305.1| - 1.4e-11 44.8 0.0 6.1e-11 42.7 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily DUF3505 PF12013.3 gi|296242818|ref|YP_003650305.1| - 0.02 15.1 0.1 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3505) Fer4_14 PF13394.1 gi|296242818|ref|YP_003650305.1| - 0.045 13.7 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain tRNA-synt_1e PF01406.14 gi|296242820|ref|YP_003650307.1| - 1.9e-122 408.1 0.0 2.5e-122 407.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|296242820|ref|YP_003650307.1| - 1.4e-16 60.1 3.4 2.9e-11 42.6 0.9 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|296242820|ref|YP_003650307.1| - 6.8e-07 27.6 1.3 2e-05 22.7 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|296242820|ref|YP_003650307.1| - 8.8e-06 25.8 0.1 3.4e-05 24.0 0.0 2.1 3 0 0 3 3 3 1 DALR domain tRNA-synt_1c PF00749.16 gi|296242820|ref|YP_003650307.1| - 0.0022 16.6 0.2 0.0067 15.1 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain PNP_UDP_1 PF01048.15 gi|296242821|ref|YP_003650308.1| - 7.2e-44 149.5 0.1 8.7e-44 149.2 0.1 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Pox_Ag35 PF03286.9 gi|296242822|ref|YP_003650309.1| - 0.029 13.9 6.8 0.051 13.0 4.7 1.3 1 0 0 1 1 1 0 Pox virus Ag35 surface protein Adenosine_kin PF04008.9 gi|296242823|ref|YP_003650310.1| - 8.2e-74 246.2 0.2 9.2e-74 246.1 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase TRAM PF01938.15 gi|296242825|ref|YP_003650312.1| - 0.0003 20.5 0.1 0.00038 20.1 0.1 1.1 1 0 0 1 1 1 1 TRAM domain FragX_IP PF05994.6 gi|296242826|ref|YP_003650313.1| - 0.00017 19.5 0.3 0.0038 15.0 0.1 1.9 1 1 1 2 2 2 2 Cytoplasmic Fragile-X interacting family DEAD_assoc PF08494.6 gi|296242826|ref|YP_003650313.1| - 0.04 13.6 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 DEAD/H associated DUF212 PF02681.9 gi|296242826|ref|YP_003650313.1| - 0.17 11.5 0.2 0.36 10.5 0.0 1.6 2 0 0 2 2 2 0 Divergent PAP2 family HAD PF12710.2 gi|296242827|ref|YP_003650314.1| - 4.2e-12 46.6 0.0 6.2e-12 46.0 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|296242827|ref|YP_003650314.1| - 2.3e-10 41.2 0.0 3.8e-07 30.7 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|296242827|ref|YP_003650314.1| - 4.1e-06 27.1 0.0 8.5e-06 26.0 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|296242827|ref|YP_003650314.1| - 5.7e-06 26.0 0.0 2.1e-05 24.2 0.0 1.8 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|296242827|ref|YP_003650314.1| - 0.00015 21.0 0.0 0.05 12.7 0.0 2.0 2 0 0 2 2 2 2 Putative Phosphatase Epimerase PF01370.16 gi|296242828|ref|YP_003650315.1| - 3.9e-26 91.9 0.0 5.2e-26 91.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|296242828|ref|YP_003650315.1| - 5.8e-16 58.2 0.0 1.1e-15 57.2 0.0 1.4 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|296242828|ref|YP_003650315.1| - 1.5e-10 40.3 0.0 2e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|296242828|ref|YP_003650315.1| - 4.7e-08 32.2 0.0 4.6e-07 29.0 0.0 2.0 1 1 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|296242828|ref|YP_003650315.1| - 1.2e-07 30.9 0.5 3e-05 23.0 0.1 2.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|296242828|ref|YP_003650315.1| - 1.3e-05 25.2 0.0 1.9e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|296242828|ref|YP_003650315.1| - 0.00034 20.5 0.0 0.00052 19.9 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|296242828|ref|YP_003650315.1| - 0.0059 16.9 0.0 0.01 16.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain KR PF08659.5 gi|296242828|ref|YP_003650315.1| - 0.032 13.9 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 KR domain NmrA PF05368.8 gi|296242828|ref|YP_003650315.1| - 0.057 12.6 0.1 0.13 11.4 0.1 1.6 1 1 0 1 1 1 0 NmrA-like family DapB_N PF01113.15 gi|296242828|ref|YP_003650315.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Aminotran_1_2 PF00155.16 gi|296242829|ref|YP_003650316.1| - 8.5e-67 225.6 0.0 1e-66 225.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|296242829|ref|YP_003650316.1| - 1.1e-05 23.9 0.0 1.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|296242829|ref|YP_003650316.1| - 0.018 13.7 0.0 0.034 12.8 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|296242829|ref|YP_003650316.1| - 0.05 12.1 0.0 0.68 8.4 0.0 2.2 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain FeoA PF04023.9 gi|296242829|ref|YP_003650316.1| - 0.12 12.3 0.0 0.57 10.1 0.0 2.1 2 0 0 2 2 2 0 FeoA domain Zn-ribbon_8 PF09723.5 gi|296242830|ref|YP_003650317.1| - 0.00035 20.4 1.0 0.0006 19.7 0.7 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HTH_20 PF12840.2 gi|296242830|ref|YP_003650317.1| - 0.0085 15.8 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|296242830|ref|YP_003650317.1| - 0.0096 15.7 0.3 0.016 15.0 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon ADK_lid PF05191.9 gi|296242830|ref|YP_003650317.1| - 0.014 15.0 1.5 0.027 14.1 1.0 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid FYDLN_acid PF09538.5 gi|296242830|ref|YP_003650317.1| - 0.024 15.2 1.0 0.036 14.6 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) HTH_11 PF08279.7 gi|296242830|ref|YP_003650317.1| - 0.031 13.9 0.1 0.047 13.3 0.1 1.3 1 0 0 1 1 1 0 HTH domain IBR PF01485.16 gi|296242830|ref|YP_003650317.1| - 0.06 13.2 0.2 0.076 12.8 0.2 1.2 1 0 0 1 1 1 0 IBR domain HTH_12 PF08461.5 gi|296242830|ref|YP_003650317.1| - 0.069 12.8 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain OrfB_Zn_ribbon PF07282.6 gi|296242830|ref|YP_003650317.1| - 0.08 12.6 0.5 0.11 12.1 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|296242830|ref|YP_003650317.1| - 0.082 12.6 6.2 0.47 10.1 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|296242830|ref|YP_003650317.1| - 0.087 12.1 0.6 8 5.8 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|296242830|ref|YP_003650317.1| - 0.095 12.3 0.4 0.15 11.7 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RuvB_C PF05491.8 gi|296242830|ref|YP_003650317.1| - 0.099 12.2 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus DNA_ligase_A_N PF04675.9 gi|296242830|ref|YP_003650317.1| - 0.1 12.4 0.0 0.17 11.6 0.0 1.3 1 1 0 1 1 1 0 DNA ligase N terminus GntR PF00392.16 gi|296242830|ref|YP_003650317.1| - 0.14 11.5 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family YwqJ-deaminase PF14431.1 gi|296242830|ref|YP_003650317.1| - 0.23 11.3 0.0 0.23 11.3 0.0 1.5 2 0 0 2 2 1 0 YwqJ-like deaminase zinc_ribbon_5 PF13719.1 gi|296242830|ref|YP_003650317.1| - 0.32 10.6 3.2 5 6.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|296242830|ref|YP_003650317.1| - 0.45 10.2 3.2 6.8 6.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Sec23_Sec24 PF04810.10 gi|296242830|ref|YP_003650317.1| - 1.3 8.6 5.1 11 5.7 0.5 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Cys_rich_KTR PF14205.1 gi|296242830|ref|YP_003650317.1| - 2.9 7.3 5.9 14 5.1 0.5 2.5 1 1 0 2 2 2 0 Cysteine-rich KTR DUF167 PF02594.11 gi|296242831|ref|YP_003650318.1| - 2.6e-19 68.9 0.4 4.7e-19 68.0 0.0 1.6 2 0 0 2 2 2 1 Uncharacterised ACR, YggU family COG1872 Radical_SAM PF04055.16 gi|296242832|ref|YP_003650319.1| - 2.1e-22 80.0 0.0 7e-22 78.3 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|296242832|ref|YP_003650319.1| - 3.3e-08 33.4 0.0 1.2e-07 31.5 0.0 2.1 2 1 0 2 2 2 1 B12 binding domain DUF4423 PF14394.1 gi|296242833|ref|YP_003650320.1| - 0.0016 18.0 0.2 0.02 14.4 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) B5 PF03484.10 gi|296242833|ref|YP_003650320.1| - 0.093 12.5 0.1 0.39 10.5 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetase B5 domain Glycos_trans_3N PF02885.12 gi|296242833|ref|YP_003650320.1| - 0.17 11.4 0.8 3.6 7.2 0.1 2.2 2 0 0 2 2 2 0 Glycosyl transferase family, helical bundle domain HAD_2 PF13419.1 gi|296242834|ref|YP_003650321.1| - 1.8e-11 44.5 0.1 3.2e-11 43.7 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|296242834|ref|YP_003650321.1| - 0.0003 21.0 0.1 0.0004 20.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|296242834|ref|YP_003650321.1| - 0.0074 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like TatD_DNase PF01026.16 gi|296242835|ref|YP_003650322.1| - 3e-46 157.7 0.0 4e-46 157.2 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase IncA PF04156.9 gi|296242837|ref|YP_003650324.1| - 1.9e-05 24.3 6.1 2.5e-05 23.9 4.2 1.3 1 0 0 1 1 1 1 IncA protein MAD PF05557.8 gi|296242837|ref|YP_003650324.1| - 0.00014 20.1 8.6 0.00019 19.7 6.0 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein DUF4201 PF13870.1 gi|296242837|ref|YP_003650324.1| - 0.0006 19.3 8.7 0.0011 18.3 6.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) GerE PF00196.14 gi|296242837|ref|YP_003650324.1| - 0.001 18.3 0.0 0.0024 17.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Myosin_tail_1 PF01576.14 gi|296242837|ref|YP_003650324.1| - 0.0013 16.5 9.7 0.0019 16.0 6.8 1.1 1 0 0 1 1 1 1 Myosin tail HTH_38 PF13936.1 gi|296242837|ref|YP_003650324.1| - 0.0023 17.4 0.8 0.0054 16.2 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain DUF3489 PF11994.3 gi|296242837|ref|YP_003650324.1| - 0.0025 17.7 0.2 0.0063 16.4 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) HTH_40 PF14493.1 gi|296242837|ref|YP_003650324.1| - 0.0028 17.8 0.7 0.0092 16.1 0.5 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HOOK PF05622.7 gi|296242837|ref|YP_003650324.1| - 0.003 15.4 9.4 0.004 15.0 6.5 1.1 1 0 0 1 1 1 1 HOOK protein AAA_13 PF13166.1 gi|296242837|ref|YP_003650324.1| - 0.0038 15.7 1.3 0.0044 15.5 0.9 1.1 1 0 0 1 1 1 1 AAA domain EzrA PF06160.7 gi|296242837|ref|YP_003650324.1| - 0.004 15.4 5.8 0.0053 14.9 4.0 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA CENP-F_leu_zip PF10473.4 gi|296242837|ref|YP_003650324.1| - 0.0041 16.9 15.6 0.0098 15.7 10.8 1.6 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CtIP_N PF10482.4 gi|296242837|ref|YP_003650324.1| - 0.0043 16.8 7.2 0.0091 15.7 4.9 1.5 2 0 0 2 2 1 1 Tumour-suppressor protein CtIP N-terminal domain Sigma70_r4_2 PF08281.7 gi|296242837|ref|YP_003650324.1| - 0.0058 16.0 0.6 0.044 13.2 0.0 2.6 3 0 0 3 3 2 1 Sigma-70, region 4 Tropomyosin PF00261.15 gi|296242837|ref|YP_003650324.1| - 0.0066 15.5 11.8 0.012 14.7 8.2 1.4 1 0 0 1 1 1 1 Tropomyosin HTH_23 PF13384.1 gi|296242837|ref|YP_003650324.1| - 0.0081 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|296242837|ref|YP_003650324.1| - 0.012 15.3 1.5 0.073 12.8 0.0 2.9 2 2 1 3 3 2 0 Helix-turn-helix domain APG6 PF04111.7 gi|296242837|ref|YP_003650324.1| - 0.013 14.5 6.5 0.017 14.1 4.5 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 PspA_IM30 PF04012.7 gi|296242837|ref|YP_003650324.1| - 0.015 14.7 9.8 0.021 14.2 5.2 2.0 1 1 1 2 2 2 0 PspA/IM30 family Spc7 PF08317.6 gi|296242837|ref|YP_003650324.1| - 0.019 13.6 7.4 0.026 13.1 5.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein PilJ PF13675.1 gi|296242837|ref|YP_003650324.1| - 0.025 14.8 2.0 0.058 13.7 0.9 1.9 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Atg14 PF10186.4 gi|296242837|ref|YP_003650324.1| - 0.026 13.4 4.9 0.032 13.1 3.4 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TMF_DNA_bd PF12329.3 gi|296242837|ref|YP_003650324.1| - 0.027 14.2 22.7 0.11 12.3 5.1 2.8 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding HTH_29 PF13551.1 gi|296242837|ref|YP_003650324.1| - 0.035 14.2 0.0 0.093 12.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.15 gi|296242837|ref|YP_003650324.1| - 0.036 13.7 0.5 0.82 9.3 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family ADIP PF11559.3 gi|296242837|ref|YP_003650324.1| - 0.037 13.9 9.0 0.07 13.0 6.3 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding PaaX PF07848.7 gi|296242837|ref|YP_003650324.1| - 0.04 13.9 0.0 0.096 12.6 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein DUF3829 PF12889.2 gi|296242837|ref|YP_003650324.1| - 0.041 13.0 4.8 0.064 12.4 3.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) NEMO PF11577.3 gi|296242837|ref|YP_003650324.1| - 0.049 13.3 9.7 1.2 8.9 3.4 2.4 2 0 0 2 2 2 0 NF-kappa-B essential modulator NEMO TPR_MLP1_2 PF07926.7 gi|296242837|ref|YP_003650324.1| - 0.052 13.3 14.0 0.082 12.6 9.2 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein HTH_28 PF13518.1 gi|296242837|ref|YP_003650324.1| - 0.065 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain bZIP_1 PF00170.16 gi|296242837|ref|YP_003650324.1| - 0.086 12.8 22.5 0.048 13.6 3.3 2.7 2 1 1 3 3 2 0 bZIP transcription factor HTH_11 PF08279.7 gi|296242837|ref|YP_003650324.1| - 0.091 12.4 1.2 0.44 10.2 0.0 2.7 3 1 0 3 3 2 0 HTH domain Microtub_assoc PF07989.6 gi|296242837|ref|YP_003650324.1| - 0.097 12.5 11.2 0.05 13.4 1.5 2.6 1 1 1 2 2 2 0 Microtubule associated Nup54 PF13874.1 gi|296242837|ref|YP_003650324.1| - 0.1 12.2 6.9 0.18 11.4 4.8 1.3 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Nsp1_C PF05064.8 gi|296242837|ref|YP_003650324.1| - 0.1 12.2 7.0 0.19 11.3 4.9 1.4 1 0 0 1 1 1 0 Nsp1-like C-terminal region ERM PF00769.14 gi|296242837|ref|YP_003650324.1| - 0.11 12.0 11.1 0.17 11.4 7.7 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Mnd1 PF03962.10 gi|296242837|ref|YP_003650324.1| - 0.11 12.1 3.8 0.21 11.2 2.6 1.5 1 0 0 1 1 1 0 Mnd1 family Reo_sigmaC PF04582.7 gi|296242837|ref|YP_003650324.1| - 0.11 11.6 0.2 0.29 10.2 0.1 1.7 1 1 0 1 1 1 0 Reovirus sigma C capsid protein Syntaxin-6_N PF09177.6 gi|296242837|ref|YP_003650324.1| - 0.12 12.7 5.3 0.12 12.7 1.9 2.2 2 1 1 3 3 2 0 Syntaxin 6, N-terminal DUF869 PF05911.6 gi|296242837|ref|YP_003650324.1| - 0.14 10.3 12.1 0.23 9.6 8.3 1.4 1 1 0 1 1 1 0 Plant protein of unknown function (DUF869) DUF4200 PF13863.1 gi|296242837|ref|YP_003650324.1| - 0.14 12.0 14.0 3.9 7.4 9.8 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) ATG16 PF08614.6 gi|296242837|ref|YP_003650324.1| - 0.15 11.8 11.4 0.28 10.9 7.9 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) Seryl_tRNA_N PF02403.17 gi|296242837|ref|YP_003650324.1| - 0.19 11.7 8.7 0.51 10.3 6.0 1.8 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain CorA PF01544.13 gi|296242837|ref|YP_003650324.1| - 0.2 10.6 4.7 0.32 9.9 3.2 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF342 PF03961.8 gi|296242837|ref|YP_003650324.1| - 0.25 9.7 8.1 0.31 9.4 5.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) TMCO5 PF14992.1 gi|296242837|ref|YP_003650324.1| - 0.25 10.4 9.2 0.39 9.8 6.4 1.2 1 0 0 1 1 1 0 TMCO5 family DUF972 PF06156.8 gi|296242837|ref|YP_003650324.1| - 0.27 11.5 10.5 0.45 10.8 2.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF724 PF05266.9 gi|296242837|ref|YP_003650324.1| - 0.36 10.4 6.3 0.6 9.6 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Laminin_II PF06009.7 gi|296242837|ref|YP_003650324.1| - 0.41 10.3 7.6 0.45 10.2 4.7 1.5 2 0 0 2 2 1 0 Laminin Domain II MCC-bdg_PDZ PF10506.4 gi|296242837|ref|YP_003650324.1| - 0.48 10.3 10.7 0.18 11.6 3.0 2.4 1 1 1 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Syntaxin PF00804.20 gi|296242837|ref|YP_003650324.1| - 0.5 10.5 5.7 0.39 10.9 2.3 2.0 1 1 1 2 2 2 0 Syntaxin Tropomyosin_1 PF12718.2 gi|296242837|ref|YP_003650324.1| - 0.59 9.9 14.8 0.31 10.9 8.6 1.8 2 0 0 2 2 1 0 Tropomyosin like Fmp27_WPPW PF10359.4 gi|296242837|ref|YP_003650324.1| - 0.74 8.1 6.8 1.3 7.3 4.7 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain FlaC_arch PF05377.6 gi|296242837|ref|YP_003650324.1| - 0.95 9.4 10.2 6.8 6.6 1.6 2.7 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) CALCOCO1 PF07888.6 gi|296242837|ref|YP_003650324.1| - 1.3 7.2 9.3 1.8 6.7 6.1 1.4 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like COG2 PF06148.6 gi|296242837|ref|YP_003650324.1| - 1.6 8.5 6.5 1.5 8.6 3.2 1.9 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TMPIT PF07851.8 gi|296242837|ref|YP_003650324.1| - 1.7 7.6 4.0 2.5 7.1 2.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF4140 PF13600.1 gi|296242837|ref|YP_003650324.1| - 2.1 8.8 8.6 1 9.8 2.0 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Fib_alpha PF08702.5 gi|296242837|ref|YP_003650324.1| - 2.7 8.1 9.1 0.35 10.9 3.5 1.5 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family Lipoprotein_20 PF13942.1 gi|296242837|ref|YP_003650324.1| - 3.3 7.1 8.6 4.9 6.6 4.7 1.9 1 1 1 2 2 2 0 YfhG lipoprotein Pox_A_type_inc PF04508.7 gi|296242837|ref|YP_003650324.1| - 4.1 7.4 16.2 1.8 8.5 1.5 3.9 4 1 0 4 4 2 0 Viral A-type inclusion protein repeat Rootletin PF15035.1 gi|296242837|ref|YP_003650324.1| - 5.7 6.8 12.4 14 5.5 8.4 1.7 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Adeno_PIX PF03955.9 gi|296242837|ref|YP_003650324.1| - 8.6 6.9 6.0 5.3 7.6 0.5 2.5 1 1 1 2 2 2 0 Adenovirus hexon-associated protein (IX) Cep57_CLD_2 PF14197.1 gi|296242837|ref|YP_003650324.1| - 8.8 6.3 15.1 29 4.7 10.5 2.0 1 1 0 1 1 1 0 Centrosome localisation domain of PPC89 Med9 PF07544.8 gi|296242837|ref|YP_003650324.1| - 8.9 6.1 11.4 12 5.7 4.9 3.0 2 1 1 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 SlyX PF04102.7 gi|296242837|ref|YP_003650324.1| - 9.5 6.6 13.3 0.28 11.6 2.4 2.6 2 1 0 3 3 2 0 SlyX Cys_knot PF00007.17 gi|296242839|ref|YP_003650326.1| - 0.56 10.3 4.6 0.48 10.5 2.1 1.7 1 1 1 2 2 2 0 Cystine-knot domain TIL PF01826.12 gi|296242839|ref|YP_003650326.1| - 1.6 8.9 7.2 0.64 10.1 1.7 2.1 1 1 1 2 2 2 0 Trypsin Inhibitor like cysteine rich domain UPF0104 PF03706.8 gi|296242840|ref|YP_003650327.1| - 3.5e-18 65.8 20.9 1.1e-17 64.2 14.5 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0104) eRF1_2 PF03464.10 gi|296242841|ref|YP_003650328.1| - 3.2e-35 121.3 0.0 5.2e-35 120.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|296242841|ref|YP_003650328.1| - 3.2e-19 69.2 1.0 7.4e-18 64.8 0.2 2.9 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|296242841|ref|YP_003650328.1| - 1.2e-15 57.2 0.0 1.9e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 GRIM-19 PF06212.7 gi|296242841|ref|YP_003650328.1| - 0.015 15.0 0.1 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 GRIM-19 protein FMN_dh PF01070.13 gi|296242841|ref|YP_003650328.1| - 0.068 12.0 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase PhoU PF01895.14 gi|296242843|ref|YP_003650330.1| - 2.7e-24 85.4 16.0 4e-18 65.6 5.8 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|296242843|ref|YP_003650330.1| - 4.6e-09 35.7 0.0 9.8e-09 34.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE SeqA PF03925.8 gi|296242843|ref|YP_003650330.1| - 0.0026 17.4 0.7 0.0049 16.6 0.5 1.5 1 0 0 1 1 1 1 SeqA protein DUF86 PF01934.12 gi|296242843|ref|YP_003650330.1| - 0.01 15.4 0.5 0.039 13.5 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function DUF86 Glyco_hydro_1 PF00232.13 gi|296242844|ref|YP_003650331.1| - 8.5e-64 215.4 0.8 5.5e-50 169.8 0.1 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|296242844|ref|YP_003650331.1| - 0.013 14.7 0.1 0.026 13.7 0.1 1.5 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) RHH_1 PF01402.16 gi|296242844|ref|YP_003650331.1| - 0.14 12.1 0.1 0.38 10.7 0.1 1.8 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family UPF0066 PF01980.11 gi|296242845|ref|YP_003650332.1| - 0.022 14.7 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0066 Glyco_hydro_cc PF11790.3 gi|296242846|ref|YP_003650333.1| - 0.00086 18.7 0.0 0.0015 18.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core SBP_bac_5 PF00496.17 gi|296242847|ref|YP_003650334.1| - 1.4e-49 168.8 5.8 2.2e-49 168.2 4.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|296242848|ref|YP_003650335.1| - 6.6e-31 107.2 15.9 6.6e-31 107.2 11.0 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3733 PF12534.3 gi|296242848|ref|YP_003650335.1| - 0.0054 16.0 0.8 0.4 9.9 0.1 2.7 2 0 0 2 2 2 2 Leucine-rich repeat containing protein 8 BPD_transp_1 PF00528.17 gi|296242849|ref|YP_003650336.1| - 2.4e-19 69.5 19.6 2.4e-19 69.5 13.6 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|296242849|ref|YP_003650336.1| - 0.0019 17.5 0.8 0.0019 17.5 0.5 2.5 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C COX7a PF02238.10 gi|296242849|ref|YP_003650336.1| - 1.2 8.8 3.9 0.79 9.4 0.7 2.1 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VIIa ABC_tran PF00005.22 gi|296242850|ref|YP_003650337.1| - 3.5e-24 85.6 0.0 5.1e-24 85.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|296242850|ref|YP_003650337.1| - 2.6e-21 75.7 0.1 4.3e-21 75.0 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|296242850|ref|YP_003650337.1| - 1.6e-05 25.0 0.0 0.0057 16.6 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|296242850|ref|YP_003650337.1| - 0.0005 20.2 0.3 0.0024 18.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|296242850|ref|YP_003650337.1| - 0.0015 17.4 0.5 0.0059 15.4 0.2 1.9 1 1 1 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|296242850|ref|YP_003650337.1| - 0.0018 18.2 0.3 0.0077 16.2 0.1 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|296242850|ref|YP_003650337.1| - 0.0022 17.4 0.0 0.004 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|296242850|ref|YP_003650337.1| - 0.0042 16.5 0.1 0.017 14.6 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|296242850|ref|YP_003650337.1| - 0.0058 15.8 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|296242850|ref|YP_003650337.1| - 0.0081 15.4 0.5 2.6 7.2 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain NACHT PF05729.7 gi|296242850|ref|YP_003650337.1| - 0.011 15.4 0.0 0.041 13.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Adeno_IVa2 PF02456.10 gi|296242850|ref|YP_003650337.1| - 0.012 14.2 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA PF00004.24 gi|296242850|ref|YP_003650337.1| - 0.019 15.1 0.2 0.062 13.5 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|296242850|ref|YP_003650337.1| - 0.039 14.7 0.3 0.072 13.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain DUF1386 PF07138.6 gi|296242850|ref|YP_003650337.1| - 0.039 13.0 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) AAA_10 PF12846.2 gi|296242850|ref|YP_003650337.1| - 0.041 13.3 0.2 0.49 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain RNA_helicase PF00910.17 gi|296242850|ref|YP_003650337.1| - 0.048 13.8 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PRK PF00485.13 gi|296242850|ref|YP_003650337.1| - 0.077 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family FtsK_SpoIIIE PF01580.13 gi|296242850|ref|YP_003650337.1| - 0.086 12.3 0.0 0.33 10.4 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family MobB PF03205.9 gi|296242850|ref|YP_003650337.1| - 0.1 12.2 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|296242850|ref|YP_003650337.1| - 0.12 12.6 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|296242850|ref|YP_003650337.1| - 0.13 12.7 0.0 0.29 11.6 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|296242850|ref|YP_003650337.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|296242851|ref|YP_003650338.1| - 1.1e-30 106.7 0.0 1.4e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242851|ref|YP_003650338.1| - 7.6e-10 39.2 0.7 2.2e-05 24.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|296242851|ref|YP_003650338.1| - 3.1e-06 27.4 0.0 6.5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_10 PF12846.2 gi|296242851|ref|YP_003650338.1| - 2e-05 24.1 0.0 0.0003 20.3 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain AAA_22 PF13401.1 gi|296242851|ref|YP_003650338.1| - 0.00022 21.3 0.0 0.0011 19.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|296242851|ref|YP_003650338.1| - 0.00023 20.6 0.0 0.00043 19.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|296242851|ref|YP_003650338.1| - 0.00045 20.2 0.1 0.00072 19.5 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|296242851|ref|YP_003650338.1| - 0.00059 20.1 0.0 0.00093 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|296242851|ref|YP_003650338.1| - 0.00066 18.6 0.0 0.0008 18.3 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_25 PF13481.1 gi|296242851|ref|YP_003650338.1| - 0.0011 18.3 0.0 0.019 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|296242851|ref|YP_003650338.1| - 0.0012 18.5 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|296242851|ref|YP_003650338.1| - 0.0012 18.0 0.1 0.0018 17.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|296242851|ref|YP_003650338.1| - 0.0014 19.4 0.2 0.003 18.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|296242851|ref|YP_003650338.1| - 0.002 17.8 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|296242851|ref|YP_003650338.1| - 0.002 17.8 0.0 0.0054 16.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain KaiC PF06745.8 gi|296242851|ref|YP_003650338.1| - 0.0021 17.2 0.1 0.3 10.1 0.0 2.2 2 0 0 2 2 2 1 KaiC Zeta_toxin PF06414.7 gi|296242851|ref|YP_003650338.1| - 0.006 15.7 0.0 0.0099 14.9 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin NACHT PF05729.7 gi|296242851|ref|YP_003650338.1| - 0.0092 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|296242851|ref|YP_003650338.1| - 0.017 14.8 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|296242851|ref|YP_003650338.1| - 0.025 14.4 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|296242851|ref|YP_003650338.1| - 0.026 14.2 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase IstB_IS21 PF01695.12 gi|296242851|ref|YP_003650338.1| - 0.026 13.9 0.0 0.84 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_23 PF13476.1 gi|296242851|ref|YP_003650338.1| - 0.035 14.4 0.0 0.067 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|296242851|ref|YP_003650338.1| - 0.05 13.7 0.0 0.13 12.4 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.9 gi|296242851|ref|YP_003650338.1| - 0.069 12.1 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 KAP family P-loop domain AAA_15 PF13175.1 gi|296242851|ref|YP_003650338.1| - 0.071 12.1 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Pox_A32 PF04665.7 gi|296242851|ref|YP_003650338.1| - 0.081 12.2 0.1 0.15 11.3 0.0 1.5 2 0 0 2 2 2 0 Poxvirus A32 protein Gtr1_RagA PF04670.7 gi|296242851|ref|YP_003650338.1| - 0.094 11.8 0.1 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region T2SE PF00437.15 gi|296242851|ref|YP_003650338.1| - 0.098 11.5 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein APS_kinase PF01583.15 gi|296242851|ref|YP_003650338.1| - 0.098 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF87 PF01935.12 gi|296242851|ref|YP_003650338.1| - 0.1 12.4 0.2 0.33 10.7 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 Mg_chelatase PF01078.16 gi|296242851|ref|YP_003650338.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF927 PF06048.6 gi|296242851|ref|YP_003650338.1| - 0.15 11.2 0.1 0.26 10.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF927) G-alpha PF00503.15 gi|296242851|ref|YP_003650338.1| - 0.16 10.6 0.0 0.2 10.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit DUF1430 PF07242.6 gi|296242852|ref|YP_003650339.1| - 0.021 14.8 4.2 0.022 14.8 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1430) DUF4191 PF13829.1 gi|296242852|ref|YP_003650339.1| - 0.027 13.5 2.8 0.027 13.6 1.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF754 PF05449.6 gi|296242852|ref|YP_003650339.1| - 0.06 13.3 0.6 0.075 13.0 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF754) FxsA PF04186.8 gi|296242852|ref|YP_003650339.1| - 0.062 12.9 4.5 0.072 12.7 3.1 1.0 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein DUF3278 PF11683.3 gi|296242852|ref|YP_003650339.1| - 0.45 10.5 3.5 0.51 10.3 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3278) Cytochrom_B_C PF00032.12 gi|296242852|ref|YP_003650339.1| - 0.48 10.6 3.9 0.59 10.3 2.7 1.2 1 0 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD DUF805 PF05656.9 gi|296242852|ref|YP_003650339.1| - 0.61 9.9 5.0 0.79 9.5 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) ATP-synt_8 PF00895.15 gi|296242852|ref|YP_003650339.1| - 3.4 7.9 7.2 9.1 6.5 0.0 2.1 2 0 0 2 2 2 0 ATP synthase protein 8 MAPEG PF01124.13 gi|296242852|ref|YP_003650339.1| - 4.3 6.9 6.3 6.3 6.4 0.4 2.0 1 1 1 2 2 2 0 MAPEG family Glyco_hydro_16 PF00722.16 gi|296242853|ref|YP_003650340.1| - 1.3e-39 135.4 0.2 2.1e-39 134.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 16 SKN1 PF03935.10 gi|296242853|ref|YP_003650340.1| - 2.6e-16 58.8 4.2 8.5e-08 30.7 0.1 2.4 3 0 0 3 3 3 2 Beta-glucan synthesis-associated protein (SKN1) CBM_4_9 PF02018.12 gi|296242853|ref|YP_003650340.1| - 0.014 15.3 0.1 0.036 14.0 0.1 1.7 1 0 0 1 1 1 0 Carbohydrate binding domain Plasmodium_Vir PF05795.6 gi|296242853|ref|YP_003650340.1| - 0.029 13.5 0.3 0.049 12.8 0.2 1.3 1 0 0 1 1 1 0 Plasmodium vivax Vir protein MFS_1 PF07690.11 gi|296242854|ref|YP_003650341.1| - 3.5e-09 35.8 33.8 5.9e-09 35.1 23.4 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily SBP_bac_1 PF01547.20 gi|296242855|ref|YP_003650342.1| - 4.6e-32 112.0 13.5 6.3e-31 108.2 9.4 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|296242855|ref|YP_003650342.1| - 1.7e-19 70.6 6.1 1.7e-19 70.6 4.2 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|296242856|ref|YP_003650343.1| - 3.2e-15 56.1 15.4 3.2e-15 56.1 10.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Scs3p PF10261.4 gi|296242856|ref|YP_003650343.1| - 0.058 12.4 0.2 0.058 12.4 0.1 1.7 2 0 0 2 2 2 0 Inositol phospholipid synthesis and fat-storage-inducing TM BPD_transp_1 PF00528.17 gi|296242857|ref|YP_003650344.1| - 4.8e-23 81.6 17.2 4.8e-23 81.6 11.9 2.2 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|296242858|ref|YP_003650345.1| - 2.2e-35 121.9 0.0 3.3e-35 121.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296242858|ref|YP_003650345.1| - 6.8e-11 42.6 3.6 4.5e-05 23.5 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|296242858|ref|YP_003650345.1| - 5e-06 26.1 0.0 1.3e-05 24.8 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_15 PF13175.1 gi|296242858|ref|YP_003650345.1| - 6.9e-06 25.3 0.0 0.04 12.9 0.1 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|296242858|ref|YP_003650345.1| - 1.4e-05 25.2 0.0 2.6e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|296242858|ref|YP_003650345.1| - 0.00019 21.2 0.1 0.00039 20.1 0.1 1.5 1 1 0 1 1 1 1 Archaeal ATPase AAA_14 PF13173.1 gi|296242858|ref|YP_003650345.1| - 0.00019 21.3 0.0 0.00069 19.5 0.0 1.9 2 1 0 2 2 1 1 AAA domain SMC_N PF02463.14 gi|296242858|ref|YP_003650345.1| - 0.0002 20.6 0.2 0.0016 17.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|296242858|ref|YP_003650345.1| - 0.00027 21.1 0.4 0.0016 18.6 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|296242858|ref|YP_003650345.1| - 0.00045 20.5 1.0 0.0095 16.2 0.7 2.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|296242858|ref|YP_003650345.1| - 0.00056 18.7 0.0 0.00075 18.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|296242858|ref|YP_003650345.1| - 0.0017 18.2 0.1 0.01 15.7 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|296242858|ref|YP_003650345.1| - 0.0019 17.4 0.2 0.0035 16.5 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|296242858|ref|YP_003650345.1| - 0.002 18.2 0.1 0.0043 17.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|296242858|ref|YP_003650345.1| - 0.0033 16.9 0.1 0.0062 16.0 0.1 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain UPF0079 PF02367.12 gi|296242858|ref|YP_003650345.1| - 0.005 16.4 0.2 0.014 15.0 0.1 1.8 2 0 0 2 2 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|296242858|ref|YP_003650345.1| - 0.0055 17.5 1.4 0.026 15.3 0.8 2.3 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|296242858|ref|YP_003650345.1| - 0.0056 16.3 0.1 0.013 15.1 0.1 1.6 1 0 0 1 1 1 1 NACHT domain AAA_10 PF12846.2 gi|296242858|ref|YP_003650345.1| - 0.006 16.0 0.0 0.0067 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain AAA_25 PF13481.1 gi|296242858|ref|YP_003650345.1| - 0.0075 15.6 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|296242858|ref|YP_003650345.1| - 0.0098 16.2 0.6 0.024 14.9 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_5 PF07728.9 gi|296242858|ref|YP_003650345.1| - 0.011 15.5 0.2 0.058 13.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|296242858|ref|YP_003650345.1| - 0.011 15.5 0.1 0.027 14.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain RecA PF00154.16 gi|296242858|ref|YP_003650345.1| - 0.013 14.6 0.0 0.024 13.7 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_29 PF13555.1 gi|296242858|ref|YP_003650345.1| - 0.013 15.0 0.1 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|296242858|ref|YP_003650345.1| - 0.019 14.0 0.0 0.038 13.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SE PF00437.15 gi|296242858|ref|YP_003650345.1| - 0.022 13.6 0.1 0.038 12.8 0.1 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_13 PF13166.1 gi|296242858|ref|YP_003650345.1| - 0.022 13.2 0.0 0.028 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|296242858|ref|YP_003650345.1| - 0.022 14.3 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|296242858|ref|YP_003650345.1| - 0.024 13.6 0.0 0.047 12.7 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|296242858|ref|YP_003650345.1| - 0.04 13.8 0.1 0.079 12.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|296242858|ref|YP_003650345.1| - 0.041 13.0 0.0 0.083 12.0 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|296242858|ref|YP_003650345.1| - 0.058 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_24 PF13479.1 gi|296242858|ref|YP_003650345.1| - 0.066 12.7 0.1 0.16 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|296242858|ref|YP_003650345.1| - 0.067 12.3 0.1 0.21 10.7 0.0 1.9 1 1 0 1 1 1 0 Chromatin associated protein KTI12 GvpD PF07088.6 gi|296242858|ref|YP_003650345.1| - 0.069 11.4 0.0 0.2 9.9 0.0 1.7 2 0 0 2 2 2 0 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|296242858|ref|YP_003650345.1| - 0.073 12.4 0.4 0.26 10.6 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|296242858|ref|YP_003650345.1| - 0.12 12.5 0.0 0.3 11.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase ATP-synt_ab PF00006.20 gi|296242858|ref|YP_003650345.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.5 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.1 gi|296242858|ref|YP_003650345.1| - 0.13 11.7 0.0 0.22 11.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|296242859|ref|YP_003650346.1| - 1.2e-31 109.8 0.0 2.8e-31 108.6 0.0 1.6 2 0 0 2 2 1 1 ABC transporter TOBE_2 PF08402.5 gi|296242859|ref|YP_003650346.1| - 2.4e-08 33.8 0.0 5.5e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 TOBE domain TOBE PF03459.12 gi|296242859|ref|YP_003650346.1| - 4.1e-06 26.8 0.1 8.2e-05 22.6 0.0 3.0 4 0 0 4 4 4 1 TOBE domain AAA_21 PF13304.1 gi|296242859|ref|YP_003650346.1| - 5.5e-05 23.2 0.2 0.0022 18.0 0.0 2.5 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|296242859|ref|YP_003650346.1| - 7.5e-05 22.7 0.2 0.0015 18.5 0.2 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|296242859|ref|YP_003650346.1| - 0.0002 21.7 0.6 0.00086 19.6 0.2 2.0 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|296242859|ref|YP_003650346.1| - 0.00033 19.8 0.1 0.3 10.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|296242859|ref|YP_003650346.1| - 0.00051 19.8 1.1 0.00099 18.8 0.1 2.0 2 1 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|296242859|ref|YP_003650346.1| - 0.0015 18.4 0.2 0.051 13.4 0.0 2.6 1 1 1 2 2 2 1 AAA domain Rad17 PF03215.10 gi|296242859|ref|YP_003650346.1| - 0.0022 16.7 0.0 0.0034 16.1 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|296242859|ref|YP_003650346.1| - 0.0032 16.6 0.0 0.0063 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|296242859|ref|YP_003650346.1| - 0.0084 15.8 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|296242859|ref|YP_003650346.1| - 0.011 15.8 0.1 0.025 14.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|296242859|ref|YP_003650346.1| - 0.012 15.9 0.1 0.058 13.7 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA PF00004.24 gi|296242859|ref|YP_003650346.1| - 0.012 15.8 0.2 0.085 13.0 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|296242859|ref|YP_003650346.1| - 0.013 15.4 0.0 0.036 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|296242859|ref|YP_003650346.1| - 0.016 14.7 0.0 0.044 13.3 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|296242859|ref|YP_003650346.1| - 0.02 15.3 0.0 0.05 14.1 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_25 PF13481.1 gi|296242859|ref|YP_003650346.1| - 0.026 13.9 0.3 0.21 10.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain DUF2874 PF11396.3 gi|296242859|ref|YP_003650346.1| - 0.029 14.3 1.7 0.057 13.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) NACHT PF05729.7 gi|296242859|ref|YP_003650346.1| - 0.031 13.9 0.1 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|296242859|ref|YP_003650346.1| - 0.04 14.7 0.5 0.1 13.4 0.3 2.0 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|296242859|ref|YP_003650346.1| - 0.053 12.7 2.3 3.4 6.8 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|296242859|ref|YP_003650346.1| - 0.055 12.9 0.0 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain MobB PF03205.9 gi|296242859|ref|YP_003650346.1| - 0.095 12.4 0.0 0.5 10.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SVM_signal PF12113.3 gi|296242860|ref|YP_003650347.1| - 0.014 15.1 4.7 0.014 15.1 3.3 2.9 3 1 0 3 3 3 0 SVM protein signal sequence DUF1345 PF07077.6 gi|296242860|ref|YP_003650347.1| - 0.066 12.7 1.0 0.078 12.4 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1345) MacB_PCD PF12704.2 gi|296242860|ref|YP_003650347.1| - 0.086 12.4 0.8 0.086 12.4 0.6 1.6 2 0 0 2 2 2 0 MacB-like periplasmic core domain TctB PF07331.6 gi|296242860|ref|YP_003650347.1| - 0.41 10.2 7.3 0.047 13.3 1.6 1.7 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family SUR7 PF06687.7 gi|296242860|ref|YP_003650347.1| - 2.1 7.8 10.1 0.096 12.2 1.8 1.9 1 1 1 2 2 2 0 SUR7/PalI family YqhR PF11085.3 gi|296242860|ref|YP_003650347.1| - 2.4 7.6 7.6 2.9 7.3 5.3 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF3392 PF11872.3 gi|296242860|ref|YP_003650347.1| - 3.9 7.5 9.0 0.88 9.5 2.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3392) VIT1 PF01988.14 gi|296242860|ref|YP_003650347.1| - 8.9 5.7 8.2 11 5.4 5.7 1.1 1 0 0 1 1 1 0 VIT family Holin_BlyA PF05102.7 gi|296242860|ref|YP_003650347.1| - 9.1 6.0 9.1 2.8 7.7 0.6 2.4 2 0 0 2 2 2 0 holin, BlyA family GFO_IDH_MocA PF01408.17 gi|296242861|ref|YP_003650348.1| - 5.3e-18 65.6 0.0 1e-17 64.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold OCD_Mu_crystall PF02423.10 gi|296242861|ref|YP_003650348.1| - 0.0045 15.8 0.0 0.0072 15.1 0.0 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family G6PD_N PF00479.17 gi|296242861|ref|YP_003650348.1| - 0.054 13.7 0.1 0.095 12.9 0.0 1.3 1 0 0 1 1 1 0 Glucose-6-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|296242861|ref|YP_003650348.1| - 0.061 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain DUF4023 PF13215.1 gi|296242861|ref|YP_003650348.1| - 0.17 11.6 0.8 3.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4023) Fucose_iso_C PF02952.12 gi|296242862|ref|YP_003650349.1| - 3.8e-11 42.6 0.0 1.2e-10 41.0 0.0 1.9 1 1 0 1 1 1 1 L-fucose isomerase, C-terminal domain BPD_transp_2 PF02653.11 gi|296242863|ref|YP_003650350.1| - 1.5e-36 125.7 27.2 2e-36 125.3 18.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|296242864|ref|YP_003650351.1| - 2.8e-39 134.7 27.8 2.8e-39 134.7 19.2 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component Luteo_PO PF04662.8 gi|296242864|ref|YP_003650351.1| - 0.022 14.2 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Luteovirus P0 protein ABC_tran PF00005.22 gi|296242865|ref|YP_003650352.1| - 2e-43 147.9 0.0 3.9e-29 101.6 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|296242865|ref|YP_003650352.1| - 9.2e-10 38.9 3.2 0.00043 20.3 0.1 2.5 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|296242865|ref|YP_003650352.1| - 0.00015 20.9 0.3 0.28 10.1 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|296242865|ref|YP_003650352.1| - 0.0028 17.1 0.2 0.055 12.9 0.0 2.8 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|296242865|ref|YP_003650352.1| - 0.013 15.1 0.3 0.28 10.9 0.0 2.7 3 0 0 3 3 3 0 Part of AAA domain AAA_23 PF13476.1 gi|296242865|ref|YP_003650352.1| - 0.045 14.0 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|296242865|ref|YP_003650352.1| - 0.082 12.5 0.1 0.23 11.0 0.1 1.7 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_13 PF13166.1 gi|296242865|ref|YP_003650352.1| - 0.16 10.3 0.1 0.24 9.8 0.1 1.1 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|296242865|ref|YP_003650352.1| - 0.17 11.5 0.9 0.48 10.0 0.0 2.2 2 0 0 2 2 2 0 Bacterial dnaA protein DUF3584 PF12128.3 gi|296242865|ref|YP_003650352.1| - 0.22 8.8 0.2 0.29 8.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_22 PF13401.1 gi|296242865|ref|YP_003650352.1| - 0.38 10.9 3.3 4.2 7.5 0.0 2.9 3 0 0 3 3 3 0 AAA domain Bmp PF02608.9 gi|296242866|ref|YP_003650353.1| - 2e-59 200.8 0.6 2.5e-59 200.5 0.4 1.1 1 0 0 1 1 1 1 Basic membrane protein UPF0228 PF05727.6 gi|296242866|ref|YP_003650353.1| - 0.13 12.0 0.2 0.4 10.4 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0228) EamA PF00892.15 gi|296242867|ref|YP_003650354.1| - 2.1e-20 73.0 35.1 4.8e-17 62.1 8.7 2.5 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|296242867|ref|YP_003650354.1| - 0.42 10.8 31.9 0.15 12.2 7.7 3.3 2 2 1 3 3 3 0 Multidrug resistance efflux transporter MS_channel PF00924.13 gi|296242867|ref|YP_003650354.1| - 1.1 8.4 6.3 3.1 7.0 4.4 1.8 1 0 0 1 1 1 0 Mechanosensitive ion channel NAD_binding_2 PF03446.10 gi|296242868|ref|YP_003650355.1| - 8.8e-28 97.1 0.0 1.1e-27 96.8 0.0 1.1 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|296242868|ref|YP_003650355.1| - 1.4e-07 31.7 0.0 2.4e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|296242868|ref|YP_003650355.1| - 8.4e-07 28.3 0.0 1.1e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|296242868|ref|YP_003650355.1| - 1.6e-06 28.2 0.1 2.9e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_11 PF14833.1 gi|296242868|ref|YP_003650355.1| - 4e-05 23.6 0.0 8.1e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GFO_IDH_MocA PF01408.17 gi|296242868|ref|YP_003650355.1| - 4.5e-05 23.9 0.0 7.2e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|296242868|ref|YP_003650355.1| - 8.4e-05 22.4 0.0 0.00017 21.5 0.0 1.6 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 3HCDH_N PF02737.13 gi|296242868|ref|YP_003650355.1| - 0.00025 20.7 0.4 0.0038 16.9 0.0 2.0 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|296242868|ref|YP_003650355.1| - 0.00053 19.4 0.0 0.00077 18.9 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|296242868|ref|YP_003650355.1| - 0.0023 17.6 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|296242868|ref|YP_003650355.1| - 0.013 15.4 0.6 0.13 12.3 0.4 2.1 1 1 0 1 1 1 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|296242868|ref|YP_003650355.1| - 0.034 13.5 0.2 0.27 10.6 0.0 2.1 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.7 gi|296242868|ref|YP_003650355.1| - 0.035 13.4 0.0 0.054 12.8 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain CoA_binding PF02629.14 gi|296242868|ref|YP_003650355.1| - 0.065 13.7 0.0 0.19 12.2 0.0 1.8 1 1 0 1 1 1 0 CoA binding domain Lactamase_B_2 PF12706.2 gi|296242869|ref|YP_003650356.1| - 4.1e-09 36.2 0.0 4.7e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|296242869|ref|YP_003650356.1| - 2e-07 30.8 0.0 5.4e-07 29.4 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|296242869|ref|YP_003650356.1| - 0.0078 15.9 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TM_helix PF05552.7 gi|296242870|ref|YP_003650357.1| - 2e-13 49.7 54.8 1.3e-06 27.9 0.8 6.8 6 0 0 6 6 6 5 Conserved TM helix Linocin_M18 PF04454.7 gi|296242871|ref|YP_003650358.1| - 2.4e-37 128.2 0.1 2.4e-37 128.2 0.0 1.5 2 0 0 2 2 2 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|296242871|ref|YP_003650358.1| - 1.6e-09 38.1 0.1 2.5e-09 37.5 0.1 1.3 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|296242871|ref|YP_003650358.1| - 0.0089 16.2 0.2 0.023 14.9 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|296242871|ref|YP_003650358.1| - 0.02 14.6 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Ferritin-like domain DUF2807 PF10988.3 gi|296242872|ref|YP_003650359.1| - 0.041 13.4 2.9 0.68 9.4 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2807) PhoU_div PF01865.11 gi|296242873|ref|YP_003650360.1| - 7.7e-20 70.9 11.4 9.2e-20 70.7 7.9 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|296242873|ref|YP_003650360.1| - 0.032 14.6 9.6 0.14 12.5 1.2 2.8 2 1 1 3 3 3 0 PhoU domain K-box PF01486.12 gi|296242873|ref|YP_003650360.1| - 0.035 13.9 3.4 1.3 8.8 0.1 2.5 2 1 0 2 2 2 0 K-box region BLOC1_2 PF10046.4 gi|296242873|ref|YP_003650360.1| - 0.04 14.0 5.8 0.06 13.4 0.8 2.6 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CAP_N PF01213.14 gi|296242873|ref|YP_003650360.1| - 0.12 11.6 0.8 0.37 10.0 0.4 1.8 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DUF4239 PF14023.1 gi|296242873|ref|YP_003650360.1| - 0.18 11.1 4.7 0.69 9.2 0.3 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4239) IFT46_B_C PF12317.3 gi|296242873|ref|YP_003650360.1| - 0.34 10.2 5.2 2 7.7 0.2 2.1 2 0 0 2 2 2 0 Intraflagellar transport complex B protein 46 C terminal Sec5 PF15469.1 gi|296242873|ref|YP_003650360.1| - 0.37 10.5 5.7 4.2 7.0 3.6 2.6 1 1 0 1 1 1 0 Exocyst complex component Sec5 DUF1664 PF07889.7 gi|296242873|ref|YP_003650360.1| - 1.3 8.8 5.1 4.9 6.9 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Syntaxin PF00804.20 gi|296242873|ref|YP_003650360.1| - 4.3 7.5 7.3 4.4 7.5 0.6 3.0 2 2 1 3 3 3 0 Syntaxin CENP-H PF05837.7 gi|296242873|ref|YP_003650360.1| - 4.8 7.4 9.9 1.8 8.7 1.4 2.3 2 1 0 2 2 2 0 Centromere protein H (CENP-H) Cep57_CLD_2 PF14197.1 gi|296242873|ref|YP_003650360.1| - 7.6 6.5 7.0 1.4 8.9 1.0 2.2 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 PHO4 PF01384.15 gi|296242874|ref|YP_003650361.1| - 9.5e-68 228.2 36.3 1.2e-67 227.9 25.2 1.1 1 0 0 1 1 1 1 Phosphate transporter family Inositol_P PF00459.20 gi|296242875|ref|YP_003650362.1| - 4.9e-16 58.8 0.0 6e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|296242875|ref|YP_003650362.1| - 3.3e-08 32.7 0.0 4.5e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Peptidase_M24 PF00557.19 gi|296242876|ref|YP_003650363.1| - 6e-54 182.7 0.0 8e-54 182.3 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|296242876|ref|YP_003650363.1| - 2.2e-12 47.6 0.0 8.1e-12 45.7 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Marek_SORF3 PF07153.6 gi|296242877|ref|YP_003650364.1| - 0.098 11.3 0.0 0.098 11.3 0.0 1.1 1 0 0 1 1 1 0 Marek's disease-like virus SORF3 protein DUF866 PF05907.8 gi|296242877|ref|YP_003650364.1| - 0.11 11.9 0.1 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) Aminotran_5 PF00266.14 gi|296242879|ref|YP_003650366.1| - 1.9e-35 122.3 0.0 2.1e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|296242879|ref|YP_003650366.1| - 1.8e-05 23.8 0.0 2.5e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.11 gi|296242879|ref|YP_003650366.1| - 0.0011 17.7 0.0 0.0017 17.1 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein 2-Hacid_dh_C PF02826.14 gi|296242880|ref|YP_003650367.1| - 2.9e-71 238.2 0.1 6.4e-71 237.1 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|296242880|ref|YP_003650367.1| - 1.6e-36 124.6 0.2 1.9e-36 124.4 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|296242880|ref|YP_003650367.1| - 1.5e-07 31.3 0.1 1.1e-06 28.5 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|296242880|ref|YP_003650367.1| - 9.2e-05 21.8 0.1 0.0022 17.3 0.0 2.6 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|296242880|ref|YP_003650367.1| - 0.00046 20.5 0.2 0.014 15.8 0.0 2.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|296242880|ref|YP_003650367.1| - 0.004 17.2 1.7 0.18 11.9 0.1 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.16 gi|296242880|ref|YP_003650367.1| - 0.0052 16.6 0.2 0.02 14.7 0.0 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Nitro_FeMo-Co PF02579.12 gi|296242880|ref|YP_003650367.1| - 0.027 14.5 0.8 10 6.2 0.0 2.8 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor NAD_Gly3P_dh_N PF01210.18 gi|296242880|ref|YP_003650367.1| - 0.053 13.2 1.0 1.8 8.3 0.7 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|296242880|ref|YP_003650367.1| - 0.062 12.9 0.5 0.47 10.0 0.1 2.3 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2863 PF11062.3 gi|296242880|ref|YP_003650367.1| - 0.12 10.4 0.0 0.17 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) ParBc PF02195.13 gi|296242881|ref|YP_003650368.1| - 2.1e-11 43.7 0.0 4.8e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|296242881|ref|YP_003650368.1| - 0.0004 19.0 0.0 0.0075 14.8 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1015) MinC_N PF05209.8 gi|296242881|ref|YP_003650368.1| - 0.0039 16.9 0.4 0.0099 15.6 0.3 1.7 1 0 0 1 1 1 1 Septum formation inhibitor MinC, N-terminal domain PHP PF02811.14 gi|296242882|ref|YP_003650369.1| - 1.1e-06 28.5 0.0 3.1e-06 27.0 0.0 1.8 2 0 0 2 2 2 1 PHP domain CarboxypepD_reg PF13620.1 gi|296242882|ref|YP_003650369.1| - 9.4e-06 25.5 0.0 9.4e-06 25.5 0.0 4.4 4 1 0 4 4 4 2 Carboxypeptidase regulatory-like domain Cadherin-like PF12733.2 gi|296242883|ref|YP_003650370.1| - 0.032 14.5 0.4 1.3 9.3 0.0 2.4 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain Transglut_core2 PF13369.1 gi|296242883|ref|YP_003650370.1| - 0.12 11.8 0.0 0.43 10.0 0.0 1.8 1 1 0 1 1 1 0 Transglutaminase-like superfamily DUF402 PF04167.8 gi|296242884|ref|YP_003650371.1| - 1.4e-14 53.6 0.1 2.4e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|296242884|ref|YP_003650371.1| - 9.3e-05 21.7 0.0 0.00015 21.1 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family UPF0147 PF03685.8 gi|296242885|ref|YP_003650372.1| - 1.4e-35 120.9 1.9 1.6e-35 120.8 1.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) HEAT_PBS PF03130.11 gi|296242885|ref|YP_003650372.1| - 0.011 16.1 0.1 0.035 14.5 0.1 1.9 2 0 0 2 2 2 0 PBS lyase HEAT-like repeat UPF0253 PF06786.7 gi|296242885|ref|YP_003650372.1| - 0.012 15.6 0.3 5 7.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) HEAT_2 PF13646.1 gi|296242885|ref|YP_003650372.1| - 0.05 13.8 0.3 0.14 12.4 0.2 1.9 1 1 0 1 1 1 0 HEAT repeats Auto_anti-p27 PF06677.7 gi|296242886|ref|YP_003650373.1| - 3.6e-13 49.0 0.3 5.6e-13 48.4 0.2 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Thymidylate_kin PF02223.12 gi|296242887|ref|YP_003650374.1| - 8.3e-40 136.1 0.0 1e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_17 PF13207.1 gi|296242887|ref|YP_003650374.1| - 1.2e-06 29.3 0.0 1.6e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|296242887|ref|YP_003650374.1| - 1.8e-05 24.7 0.0 2.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|296242887|ref|YP_003650374.1| - 3.5e-05 24.1 0.0 9.9e-05 22.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|296242887|ref|YP_003650374.1| - 0.00013 21.8 0.0 0.00019 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|296242887|ref|YP_003650374.1| - 0.0023 17.8 0.7 1.6 8.5 0.0 2.2 2 0 0 2 2 2 2 Shikimate kinase UPF0079 PF02367.12 gi|296242887|ref|YP_003650374.1| - 0.0028 17.2 0.1 0.0067 16.0 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 dNK PF01712.14 gi|296242887|ref|YP_003650374.1| - 0.003 17.4 0.8 0.007 16.2 0.2 1.9 2 1 0 2 2 1 1 Deoxynucleoside kinase NACHT PF05729.7 gi|296242887|ref|YP_003650374.1| - 0.0042 16.7 0.0 0.0068 16.0 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|296242887|ref|YP_003650374.1| - 0.0072 16.4 0.0 0.063 13.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain ATP-synt_F6 PF05511.6 gi|296242887|ref|YP_003650374.1| - 0.0087 15.9 0.1 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial ATP synthase coupling factor 6 Arch_ATPase PF01637.13 gi|296242887|ref|YP_003650374.1| - 0.009 15.7 0.2 0.023 14.4 0.0 1.8 2 0 0 2 2 2 1 Archaeal ATPase APS_kinase PF01583.15 gi|296242887|ref|YP_003650374.1| - 0.011 15.3 0.0 0.043 13.4 0.0 1.9 2 1 0 2 2 2 0 Adenylylsulphate kinase ArgK PF03308.11 gi|296242887|ref|YP_003650374.1| - 0.014 14.1 0.0 0.19 10.4 0.0 2.0 2 0 0 2 2 2 0 ArgK protein Zeta_toxin PF06414.7 gi|296242887|ref|YP_003650374.1| - 0.016 14.2 0.0 0.044 12.8 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.17 gi|296242887|ref|YP_003650374.1| - 0.02 15.0 0.0 0.038 14.1 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|296242887|ref|YP_003650374.1| - 0.02 14.8 0.0 0.036 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|296242887|ref|YP_003650374.1| - 0.02 14.1 0.0 0.033 13.4 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family KAP_NTPase PF07693.9 gi|296242887|ref|YP_003650374.1| - 0.021 13.8 0.0 0.037 13.0 0.0 1.2 1 1 0 1 1 1 0 KAP family P-loop domain DUF815 PF05673.8 gi|296242887|ref|YP_003650374.1| - 0.034 13.0 0.1 1.9 7.3 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF815) ABC_tran PF00005.22 gi|296242887|ref|YP_003650374.1| - 0.057 13.7 0.0 0.096 12.9 0.0 1.4 1 0 0 1 1 1 0 ABC transporter MobB PF03205.9 gi|296242887|ref|YP_003650374.1| - 0.058 13.1 0.0 0.093 12.4 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|296242887|ref|YP_003650374.1| - 0.11 12.2 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 NTPase T2SE PF00437.15 gi|296242887|ref|YP_003650374.1| - 0.12 11.3 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|296242887|ref|YP_003650374.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|296242887|ref|YP_003650374.1| - 0.14 11.3 0.0 0.29 10.2 0.0 1.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DUF126 PF01989.11 gi|296242888|ref|YP_003650375.1| - 1.7e-26 91.7 0.1 2.3e-26 91.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF126 DUF521 PF04412.8 gi|296242889|ref|YP_003650376.1| - 4.2e-93 312.0 0.0 4.7e-93 311.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.11 gi|296242890|ref|YP_003650377.1| - 9.9e-85 284.4 0.0 1.2e-84 284.1 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VanW PF04294.8 gi|296242890|ref|YP_003650377.1| - 0.031 13.4 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 VanW like protein MobB PF03205.9 gi|296242891|ref|YP_003650378.1| - 1.5e-05 24.7 0.0 0.00018 21.2 0.0 2.3 1 1 1 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Clp1 PF06807.9 gi|296242891|ref|YP_003650378.1| - 0.0001 22.1 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Pre-mRNA cleavage complex II protein Clp1 Zeta_toxin PF06414.7 gi|296242891|ref|YP_003650378.1| - 0.16 11.0 0.1 0.41 9.7 0.1 1.6 2 0 0 2 2 2 0 Zeta toxin KaiC PF06745.8 gi|296242893|ref|YP_003650380.1| - 4.7e-07 29.1 0.0 0.00018 20.7 0.0 2.1 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|296242893|ref|YP_003650380.1| - 0.00021 20.7 0.0 0.00059 19.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|296242893|ref|YP_003650380.1| - 0.00026 20.6 0.0 0.00044 19.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|296242893|ref|YP_003650380.1| - 0.0055 16.7 0.0 0.0066 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|296242893|ref|YP_003650380.1| - 0.007 15.8 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein DUF2075 PF09848.4 gi|296242893|ref|YP_003650380.1| - 0.014 14.4 0.0 0.024 13.6 0.0 1.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) Arf PF00025.16 gi|296242893|ref|YP_003650380.1| - 0.014 14.5 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family AAA_30 PF13604.1 gi|296242893|ref|YP_003650380.1| - 0.016 14.8 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad51 PF08423.6 gi|296242893|ref|YP_003650380.1| - 0.036 12.9 0.3 0.089 11.6 0.2 1.6 1 1 0 1 1 1 0 Rad51 Arch_ATPase PF01637.13 gi|296242893|ref|YP_003650380.1| - 0.043 13.5 0.0 0.045 13.4 0.0 1.3 1 1 0 1 1 1 0 Archaeal ATPase Viral_helicase1 PF01443.13 gi|296242893|ref|YP_003650380.1| - 0.047 13.2 0.0 0.058 12.9 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.1 gi|296242893|ref|YP_003650380.1| - 0.05 13.3 0.0 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|296242893|ref|YP_003650380.1| - 0.09 12.6 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|296242893|ref|YP_003650380.1| - 0.091 11.9 0.0 0.13 11.4 0.0 1.4 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF46 PF01864.12 gi|296242894|ref|YP_003650381.1| - 8.1e-27 94.2 3.3 2.6e-26 92.5 2.3 1.6 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|296242894|ref|YP_003650381.1| - 1.6e-08 34.5 3.6 1.6e-08 34.5 2.5 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family Rhomboid PF01694.17 gi|296242894|ref|YP_003650381.1| - 0.045 13.7 3.4 0.12 12.3 2.2 1.8 1 1 0 1 1 1 0 Rhomboid family Ribosomal_L44 PF00935.14 gi|296242895|ref|YP_003650382.1| - 9.5e-29 99.2 11.0 1.3e-28 98.7 7.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zinc_ribbon_4 PF13717.1 gi|296242895|ref|YP_003650382.1| - 0.0019 17.8 4.1 0.011 15.3 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|296242895|ref|YP_003650382.1| - 0.0025 17.3 4.6 0.011 15.2 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Mu-like_Com PF10122.4 gi|296242895|ref|YP_003650382.1| - 0.0066 15.4 2.5 0.19 10.7 0.1 2.2 2 0 0 2 2 2 1 Mu-like prophage protein Com zf-ISL3 PF14690.1 gi|296242895|ref|YP_003650382.1| - 0.016 15.1 5.3 0.13 12.2 1.1 2.6 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-DNA_Pol PF08996.5 gi|296242895|ref|YP_003650382.1| - 0.017 14.5 0.4 0.23 10.8 0.1 2.0 2 0 0 2 2 2 0 DNA Polymerase alpha zinc finger zinc_ribbon_2 PF13240.1 gi|296242895|ref|YP_003650382.1| - 0.018 14.5 2.2 3.7 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|296242895|ref|YP_003650382.1| - 0.025 13.8 0.8 4.6 6.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|296242895|ref|YP_003650382.1| - 0.035 14.4 1.5 1.6 9.0 1.0 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|296242895|ref|YP_003650382.1| - 0.038 13.9 1.6 1.6 8.6 0.1 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Yippee-Mis18 PF03226.9 gi|296242895|ref|YP_003650382.1| - 0.043 13.8 0.2 0.056 13.4 0.2 1.2 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly C1_1 PF00130.17 gi|296242895|ref|YP_003650382.1| - 0.066 12.9 0.8 0.42 10.3 0.1 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) WCCH PF03716.9 gi|296242895|ref|YP_003650382.1| - 0.095 12.1 0.7 0.095 12.1 0.5 1.8 2 0 0 2 2 2 0 WCCH motif DUF2082 PF09855.4 gi|296242895|ref|YP_003650382.1| - 0.11 12.3 1.3 2.4 8.0 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.11 gi|296242895|ref|YP_003650382.1| - 0.12 12.0 0.4 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_4 PF13894.1 gi|296242895|ref|YP_003650382.1| - 0.13 12.6 1.4 7.1 7.2 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Fer4_18 PF13746.1 gi|296242895|ref|YP_003650382.1| - 0.13 12.6 2.1 0.25 11.7 1.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Cys_rich_KTR PF14205.1 gi|296242895|ref|YP_003650382.1| - 0.14 11.6 2.7 2.1 7.8 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR DZR PF12773.2 gi|296242895|ref|YP_003650382.1| - 0.19 11.5 3.6 0.7 9.7 2.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L33 PF00471.15 gi|296242895|ref|YP_003650382.1| - 0.27 11.5 0.7 0.27 11.5 0.5 3.2 2 1 1 3 3 3 0 Ribosomal protein L33 CpXC PF14353.1 gi|296242895|ref|YP_003650382.1| - 0.31 11.0 3.8 1.4 8.8 0.1 2.2 1 1 0 2 2 2 0 CpXC protein PyrI_C PF02748.10 gi|296242895|ref|YP_003650382.1| - 0.46 9.9 2.4 0.43 10.0 0.2 1.8 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Zn-ribbon_8 PF09723.5 gi|296242895|ref|YP_003650382.1| - 0.71 9.8 3.9 9.3 6.2 0.5 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-AN1 PF01428.11 gi|296242895|ref|YP_003650382.1| - 1.2 9.0 5.5 1.5 8.7 0.4 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger zf-tcix PF14952.1 gi|296242895|ref|YP_003650382.1| - 1.8 7.9 4.7 1.1 8.6 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TFIIS_C PF01096.13 gi|296242895|ref|YP_003650382.1| - 1.9 8.2 6.4 2.2 7.9 0.4 2.4 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.6 gi|296242895|ref|YP_003650382.1| - 2 8.1 5.1 40 3.9 3.6 2.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.21 gi|296242895|ref|YP_003650382.1| - 2.4 8.6 7.3 5.2 7.6 0.4 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Elf1 PF05129.8 gi|296242895|ref|YP_003650382.1| - 4.9 6.9 8.9 0.81 9.4 0.4 2.6 1 1 2 3 3 3 0 Transcription elongation factor Elf1 like UPF0547 PF10571.4 gi|296242895|ref|YP_003650382.1| - 4.9 6.9 6.0 12 5.7 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_S27e PF01667.12 gi|296242896|ref|YP_003650383.1| - 1.8e-15 56.1 1.4 2.1e-15 55.9 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 HypA PF01155.14 gi|296242896|ref|YP_003650383.1| - 0.0014 18.3 0.1 0.0015 18.1 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|296242896|ref|YP_003650383.1| - 0.0042 16.5 1.1 2.4 7.7 0.1 2.4 2 0 0 2 2 2 2 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|296242896|ref|YP_003650383.1| - 0.0093 15.2 1.1 0.014 14.6 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|296242896|ref|YP_003650383.1| - 0.0098 15.8 0.9 0.014 15.2 0.6 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DUF2296 PF10058.4 gi|296242896|ref|YP_003650383.1| - 0.012 15.3 0.3 0.017 14.8 0.2 1.3 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-ribbon_3 PF13248.1 gi|296242896|ref|YP_003650383.1| - 0.014 14.5 2.3 0.37 10.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|296242896|ref|YP_003650383.1| - 0.036 14.3 0.9 0.16 12.2 0.6 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.1 gi|296242896|ref|YP_003650383.1| - 0.037 13.5 2.8 0.13 11.8 2.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|296242896|ref|YP_003650383.1| - 0.04 13.3 3.7 0.16 11.4 2.6 1.9 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.2 gi|296242896|ref|YP_003650383.1| - 0.043 13.6 1.5 0.11 12.3 1.1 1.6 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|296242896|ref|YP_003650383.1| - 0.053 13.2 0.9 7.8 6.3 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_6 PF14599.1 gi|296242896|ref|YP_003650383.1| - 0.055 13.2 0.3 0.07 12.9 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon ADK_lid PF05191.9 gi|296242896|ref|YP_003650383.1| - 0.073 12.7 2.1 0.19 11.3 1.4 1.6 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF3797 PF12677.2 gi|296242896|ref|YP_003650383.1| - 0.092 12.3 0.0 9.2 5.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) DUF4206 PF13901.1 gi|296242896|ref|YP_003650383.1| - 0.19 11.2 0.8 0.23 10.9 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) C1_1 PF00130.17 gi|296242896|ref|YP_003650383.1| - 0.3 10.8 2.0 0.67 9.7 0.1 1.9 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-trcl PF13451.1 gi|296242896|ref|YP_003650383.1| - 0.55 9.9 4.9 3 7.5 0.2 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain zf-BED PF02892.10 gi|296242896|ref|YP_003650383.1| - 0.74 9.6 4.1 8.4 6.2 0.4 2.2 1 1 1 2 2 2 0 BED zinc finger zf-C2H2_3 PF13878.1 gi|296242896|ref|YP_003650383.1| - 1.7 8.2 4.6 3.4 7.3 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DivIC PF04977.10 gi|296242897|ref|YP_003650384.1| - 0.0051 16.2 0.3 0.013 15.0 0.2 1.6 1 0 0 1 1 1 1 Septum formation initiator Spc24 PF08286.6 gi|296242897|ref|YP_003650384.1| - 0.01 15.5 1.6 0.015 15.0 0.6 1.6 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 GrpE PF01025.14 gi|296242897|ref|YP_003650384.1| - 0.024 14.1 0.0 0.076 12.5 0.1 1.7 2 0 0 2 2 2 0 GrpE Syntaphilin PF15290.1 gi|296242897|ref|YP_003650384.1| - 0.04 13.4 0.6 0.072 12.5 0.4 1.3 1 0 0 1 1 1 0 Golgi-localised syntaxin-1-binding clamp DUF2730 PF10805.3 gi|296242897|ref|YP_003650384.1| - 0.08 12.6 1.6 1.6 8.4 0.3 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2730) FlaC_arch PF05377.6 gi|296242897|ref|YP_003650384.1| - 0.11 12.4 1.7 0.33 10.8 1.0 1.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) PEP-utilisers_N PF05524.8 gi|296242897|ref|YP_003650384.1| - 0.11 12.2 0.1 0.18 11.6 0.1 1.3 1 0 0 1 1 1 0 PEP-utilising enzyme, N-terminal SlyX PF04102.7 gi|296242897|ref|YP_003650384.1| - 0.18 12.1 1.6 0.37 11.1 1.1 1.5 1 0 0 1 1 1 0 SlyX Med9 PF07544.8 gi|296242897|ref|YP_003650384.1| - 0.2 11.4 3.8 0.43 10.3 2.6 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Ribosomal_L29 PF00831.18 gi|296242897|ref|YP_003650384.1| - 0.24 11.1 5.4 2.8 7.7 2.1 2.3 2 0 0 2 2 2 0 Ribosomal L29 protein DUF4200 PF13863.1 gi|296242897|ref|YP_003650384.1| - 0.32 10.9 4.8 0.57 10.1 3.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) IFT20 PF14931.1 gi|296242897|ref|YP_003650384.1| - 0.5 10.2 3.6 1.1 9.1 2.5 1.5 1 0 0 1 1 1 0 Intraflagellar transport complex B, subunit 20 bZIP_2 PF07716.10 gi|296242897|ref|YP_003650384.1| - 0.57 10.0 5.0 0.97 9.3 3.5 1.4 1 0 0 1 1 1 0 Basic region leucine zipper DUF948 PF06103.6 gi|296242897|ref|YP_003650384.1| - 0.72 9.7 3.3 17 5.3 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|296242897|ref|YP_003650384.1| - 8.7 5.8 10.3 0.2 11.2 0.2 2.2 2 0 0 2 2 2 0 IncA protein CTP_synth_N PF06418.9 gi|296242898|ref|YP_003650385.1| - 7.7e-123 408.9 0.1 1e-122 408.5 0.1 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|296242898|ref|YP_003650385.1| - 8.4e-41 139.5 0.0 1.4e-40 138.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|296242898|ref|YP_003650385.1| - 6.5e-12 45.3 0.0 1.2e-11 44.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|296242898|ref|YP_003650385.1| - 7.4e-06 25.5 0.0 1.3e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|296242898|ref|YP_003650385.1| - 0.017 14.6 0.0 0.036 13.6 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Pribosyltran PF00156.22 gi|296242899|ref|YP_003650386.1| - 1.4e-16 60.3 0.1 1.9e-16 59.9 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|296242899|ref|YP_003650386.1| - 0.00091 18.4 0.0 0.0012 18.1 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Aldo_ket_red PF00248.16 gi|296242901|ref|YP_003650388.1| - 6.3e-62 208.9 0.0 7.2e-62 208.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family tRNA_SAD PF07973.9 gi|296242902|ref|YP_003650389.1| - 2.4e-12 46.5 0.1 4e-12 45.8 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|296242902|ref|YP_003650389.1| - 1.9e-06 26.4 0.0 3.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) TFIIB PF00382.14 gi|296242903|ref|YP_003650390.1| - 1.1e-41 140.5 0.4 4.2e-21 74.5 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|296242903|ref|YP_003650390.1| - 2.5e-13 49.0 0.3 4.3e-13 48.3 0.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|296242903|ref|YP_003650390.1| - 1.6e-06 28.0 0.0 0.072 13.0 0.0 2.3 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4 PF04545.11 gi|296242903|ref|YP_003650390.1| - 0.00032 19.9 0.4 0.0024 17.1 0.0 2.7 4 0 0 4 4 4 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|296242903|ref|YP_003650390.1| - 0.007 15.5 0.4 0.99 8.6 0.0 4.0 4 1 0 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 RHH_3 PF12651.2 gi|296242903|ref|YP_003650390.1| - 0.037 13.7 1.0 0.9 9.3 0.1 2.8 3 0 0 3 3 3 0 Ribbon-helix-helix domain HTH_AsnC-type PF13404.1 gi|296242903|ref|YP_003650390.1| - 0.05 13.1 0.0 0.33 10.5 0.0 2.4 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|296242903|ref|YP_003650390.1| - 0.076 12.4 0.1 0.97 8.9 0.1 2.7 1 1 1 2 2 2 0 Sigma-70, region 4 Leptin PF02024.10 gi|296242903|ref|YP_003650390.1| - 0.13 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Leptin A2L_zn_ribbon PF08792.5 gi|296242903|ref|YP_003650390.1| - 0.2 11.1 0.1 0.35 10.3 0.0 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain SUI1 PF01253.17 gi|296242904|ref|YP_003650391.1| - 1.5e-23 82.3 1.9 1.7e-23 82.1 1.3 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Rubredoxin PF00301.15 gi|296242905|ref|YP_003650392.1| - 0.00017 21.4 3.3 0.0019 18.0 0.2 2.1 2 0 0 2 2 2 1 Rubredoxin zinc_ribbon_5 PF13719.1 gi|296242905|ref|YP_003650392.1| - 0.00017 21.0 3.9 0.024 14.1 0.2 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|296242905|ref|YP_003650392.1| - 0.00056 19.5 4.1 0.057 13.1 0.3 2.2 1 1 1 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|296242905|ref|YP_003650392.1| - 0.0059 16.5 2.9 0.01 15.7 2.0 1.4 1 1 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|296242905|ref|YP_003650392.1| - 0.0062 15.7 1.0 1.9 7.8 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-HIT PF04438.11 gi|296242905|ref|YP_003650392.1| - 0.009 15.6 3.7 0.92 9.2 0.1 2.2 2 0 0 2 2 2 2 HIT zinc finger UPF0547 PF10571.4 gi|296242905|ref|YP_003650392.1| - 0.0098 15.5 3.6 0.28 10.9 0.3 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.7 gi|296242905|ref|YP_003650392.1| - 0.012 14.9 3.1 0.37 10.1 0.2 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|296242905|ref|YP_003650392.1| - 0.022 14.4 0.1 0.022 14.4 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|296242905|ref|YP_003650392.1| - 0.022 14.2 9.0 0.35 10.3 6.2 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|296242905|ref|YP_003650392.1| - 0.029 14.1 5.6 0.077 12.8 0.2 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF3133 PF11331.3 gi|296242905|ref|YP_003650392.1| - 0.033 13.7 2.5 1.7 8.2 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3133) zf-C2H2 PF00096.21 gi|296242905|ref|YP_003650392.1| - 0.049 13.9 1.5 0.67 10.4 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_ribbon_recom PF13408.1 gi|296242905|ref|YP_003650392.1| - 0.07 13.4 1.8 7.7 6.8 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain DZR PF12773.2 gi|296242905|ref|YP_003650392.1| - 0.07 12.9 1.1 0.76 9.6 0.8 2.0 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1 PF03811.8 gi|296242905|ref|YP_003650392.1| - 0.071 12.6 3.6 0.16 11.5 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain DUF329 PF03884.9 gi|296242905|ref|YP_003650392.1| - 0.095 12.2 1.0 0.49 9.9 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF329) DUF3342 PF11822.3 gi|296242905|ref|YP_003650392.1| - 0.12 11.4 0.1 0.13 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3342) zf-C2H2_4 PF13894.1 gi|296242905|ref|YP_003650392.1| - 0.13 12.6 1.7 3.9 8.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-H2C2_5 PF13909.1 gi|296242905|ref|YP_003650392.1| - 0.19 12.0 0.7 3.4 8.0 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc-finger domain OrfB_Zn_ribbon PF07282.6 gi|296242905|ref|YP_003650392.1| - 0.45 10.2 2.1 1.2 8.7 1.5 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.4 gi|296242905|ref|YP_003650392.1| - 0.53 9.3 8.4 4.4 6.4 5.8 2.0 1 1 0 1 1 1 0 Mu-like prophage protein Com TFIIS_C PF01096.13 gi|296242905|ref|YP_003650392.1| - 0.95 9.1 5.4 7 6.3 0.2 2.3 3 0 0 3 3 2 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.1 gi|296242905|ref|YP_003650392.1| - 0.96 9.8 3.0 15 6.1 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-CSL PF05207.8 gi|296242905|ref|YP_003650392.1| - 1.1 8.7 3.5 2.4 7.7 2.4 1.6 1 1 0 1 1 1 0 CSL zinc finger zf-ISL3 PF14690.1 gi|296242905|ref|YP_003650392.1| - 3.2 7.8 5.8 14 5.7 0.5 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Arginase PF00491.16 gi|296242906|ref|YP_003650393.1| - 2.1e-64 217.5 0.0 2.3e-64 217.3 0.0 1.0 1 0 0 1 1 1 1 Arginase family tRNA-synt_2b PF00587.20 gi|296242907|ref|YP_003650394.1| - 2.9e-49 166.9 0.0 5e-49 166.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|296242907|ref|YP_003650394.1| - 3.5e-21 74.9 0.3 9.6e-21 73.5 0.0 1.9 2 0 0 2 2 2 1 Anticodon binding domain Antitoxin-MazE PF04014.13 gi|296242908|ref|YP_003650395.1| - 0.006 16.2 0.1 0.015 15.0 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Molydop_binding PF01568.16 gi|296242908|ref|YP_003650395.1| - 0.027 14.2 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain Radical_SAM PF04055.16 gi|296242910|ref|YP_003650397.1| - 3.3e-12 46.8 0.0 1e-11 45.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|296242910|ref|YP_003650397.1| - 1.7e-09 37.5 0.1 5e-09 36.0 0.0 1.8 2 0 0 2 2 2 1 B12 binding domain PhoU_div PF01865.11 gi|296242911|ref|YP_003650398.1| - 1.9e-08 33.7 7.8 2.3e-08 33.4 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.14 gi|296242911|ref|YP_003650398.1| - 2.2e-06 28.0 9.4 0.00052 20.4 1.0 2.6 2 2 0 2 2 2 2 PhoU domain Dor1 PF04124.7 gi|296242911|ref|YP_003650398.1| - 0.0076 14.7 2.6 0.023 13.1 1.8 1.8 1 1 0 1 1 1 1 Dor1-like family PLU-1 PF08429.6 gi|296242911|ref|YP_003650398.1| - 0.009 14.9 0.2 2.1 7.1 0.0 2.1 1 1 1 2 2 2 2 PLU-1-like protein SPAM PF02090.10 gi|296242911|ref|YP_003650398.1| - 0.019 14.9 2.5 0.029 14.3 1.7 1.4 1 0 0 1 1 1 0 Salmonella surface presentation of antigen gene type M protein His_kinase PF06580.8 gi|296242911|ref|YP_003650398.1| - 0.11 12.4 2.4 1.2 9.1 0.2 2.9 1 1 0 3 3 3 0 Histidine kinase Flavoprotein PF02441.14 gi|296242913|ref|YP_003650400.1| - 6.2e-25 87.3 0.0 8.8e-25 86.8 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein THUMP PF02926.12 gi|296242914|ref|YP_003650401.1| - 0.087 12.7 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 THUMP domain DASH_Dad4 PF08650.5 gi|296242914|ref|YP_003650401.1| - 0.51 10.2 4.4 3.6 7.5 0.2 2.1 1 1 1 2 2 2 0 DASH complex subunit Dad4 GATase_6 PF13522.1 gi|296242915|ref|YP_003650402.1| - 1.6e-07 31.3 0.0 2.2e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|296242915|ref|YP_003650402.1| - 0.0004 19.1 0.0 0.00072 18.3 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.16 gi|296242915|ref|YP_003650402.1| - 0.14 10.8 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II NAD_kinase PF01513.16 gi|296242916|ref|YP_003650403.1| - 1.8e-53 181.1 0.1 2.1e-53 180.9 0.1 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|296242916|ref|YP_003650403.1| - 0.00014 21.2 0.9 0.0045 16.4 0.2 3.2 4 0 0 4 4 4 1 Diacylglycerol kinase catalytic domain DeoRC PF00455.17 gi|296242916|ref|YP_003650403.1| - 0.0021 17.7 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain DRTGG PF07085.7 gi|296242916|ref|YP_003650403.1| - 0.13 11.9 0.1 2.7 7.6 0.1 2.5 2 0 0 2 2 2 0 DRTGG domain eIF-5a PF01287.15 gi|296242917|ref|YP_003650404.1| - 1.6e-12 47.1 1.1 2.6e-12 46.4 0.5 1.6 2 0 0 2 2 2 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|296242917|ref|YP_003650404.1| - 1.6e-06 27.8 0.2 5.6e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.15 gi|296242917|ref|YP_003650404.1| - 0.0002 20.9 0.5 0.0004 19.9 0.3 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain KOW PF00467.24 gi|296242917|ref|YP_003650404.1| - 0.015 14.9 0.1 0.034 13.8 0.0 1.6 1 0 0 1 1 1 0 KOW motif DUF4178 PF13785.1 gi|296242917|ref|YP_003650404.1| - 0.085 12.8 0.0 0.12 12.3 0.0 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4178) FDC-SP PF15215.1 gi|296242919|ref|YP_003650406.1| - 0.068 13.4 0.1 3.3 8.0 0.0 2.3 2 0 0 2 2 2 0 Follicular dendritic cell secreted peptide Topoisom_bac PF01131.15 gi|296242920|ref|YP_003650407.1| - 1.2e-93 314.1 1.1 1.9e-93 313.5 0.7 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|296242920|ref|YP_003650407.1| - 1.7e-20 72.8 0.0 6.7e-20 70.9 0.0 2.2 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|296242920|ref|YP_003650407.1| - 2.9e-11 43.1 0.0 6.5e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|296242920|ref|YP_003650407.1| - 5.8e-10 38.8 0.1 0.0078 16.0 0.0 3.8 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.10 gi|296242920|ref|YP_003650407.1| - 6.7e-06 26.0 0.0 1.7e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|296242920|ref|YP_003650407.1| - 0.0013 18.8 0.3 0.014 15.5 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|296242920|ref|YP_003650407.1| - 0.0094 15.6 0.0 0.035 13.8 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain zf-ribbon_3 PF13248.1 gi|296242920|ref|YP_003650407.1| - 0.011 14.9 0.5 3.6 6.9 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain PhoH PF02562.11 gi|296242920|ref|YP_003650407.1| - 0.018 14.2 0.0 0.046 12.9 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein zinc_ribbon_2 PF13240.1 gi|296242920|ref|YP_003650407.1| - 0.051 13.0 8.0 0.91 9.0 2.4 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|296242920|ref|YP_003650407.1| - 1.3 8.9 7.5 6.9 6.6 0.0 3.2 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|296242920|ref|YP_003650407.1| - 4.6 7.2 7.7 8.5 6.4 0.5 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|296242920|ref|YP_003650407.1| - 9.3 6.3 7.2 40 4.3 0.1 3.1 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 KaiC PF06745.8 gi|296242921|ref|YP_003650408.1| - 1.7e-86 289.0 0.0 1.9e-86 288.8 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|296242921|ref|YP_003650408.1| - 5.2e-11 42.3 0.0 7.4e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|296242921|ref|YP_003650408.1| - 0.00021 19.7 0.1 0.00038 18.9 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.4 gi|296242921|ref|YP_003650408.1| - 0.0069 15.4 0.9 0.16 10.9 0.3 2.0 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) PPV_E1_C PF00519.12 gi|296242921|ref|YP_003650408.1| - 0.0086 14.7 0.0 0.016 13.8 0.0 1.4 1 0 0 1 1 1 1 Papillomavirus helicase NTPase_1 PF03266.10 gi|296242921|ref|YP_003650408.1| - 0.012 15.3 0.2 0.02 14.5 0.1 1.4 1 1 0 1 1 1 0 NTPase AAA_19 PF13245.1 gi|296242921|ref|YP_003650408.1| - 0.018 14.8 0.6 0.056 13.1 0.4 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|296242921|ref|YP_003650408.1| - 0.02 15.2 0.3 0.086 13.1 0.2 2.0 1 1 0 1 1 1 0 AAA domain DnaB_C PF03796.10 gi|296242921|ref|YP_003650408.1| - 0.039 12.8 0.0 0.064 12.1 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain T2SE PF00437.15 gi|296242921|ref|YP_003650408.1| - 0.096 11.5 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|296242922|ref|YP_003650409.1| - 2.1e-100 332.1 0.0 1.9e-50 170.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|296242922|ref|YP_003650409.1| - 5.9e-25 87.0 0.1 3.4e-24 84.5 0.2 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|296242922|ref|YP_003650409.1| - 2.1e-16 59.7 0.1 2.4e-08 33.3 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|296242922|ref|YP_003650409.1| - 9.2e-15 55.1 0.0 7.4e-07 29.3 0.0 2.7 2 0 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.9 gi|296242922|ref|YP_003650409.1| - 3.1e-14 53.2 0.0 8.9e-08 32.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|296242922|ref|YP_003650409.1| - 1.7e-13 50.8 0.2 5.8e-06 26.4 0.0 4.2 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|296242922|ref|YP_003650409.1| - 9.5e-13 48.0 0.6 1.9e-05 24.4 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|296242922|ref|YP_003650409.1| - 2.7e-12 47.5 0.6 2.9e-06 28.0 0.1 2.9 2 2 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|296242922|ref|YP_003650409.1| - 4.1e-12 45.5 0.2 4.8e-05 22.2 0.0 2.6 2 1 1 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|296242922|ref|YP_003650409.1| - 5e-12 45.8 0.0 5.9e-05 22.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|296242922|ref|YP_003650409.1| - 1.3e-11 43.9 0.2 5.3e-11 41.9 0.0 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_14 PF13173.1 gi|296242922|ref|YP_003650409.1| - 5.4e-11 42.4 0.0 1.4e-05 24.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|296242922|ref|YP_003650409.1| - 6e-10 38.5 0.0 8.5e-05 21.7 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|296242922|ref|YP_003650409.1| - 1.5e-09 37.4 0.0 0.0018 17.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|296242922|ref|YP_003650409.1| - 8.8e-09 35.7 0.1 0.0012 19.1 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|296242922|ref|YP_003650409.1| - 1e-08 35.2 0.0 0.0027 17.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|296242922|ref|YP_003650409.1| - 2.7e-08 33.5 0.0 0.0014 18.5 0.0 3.1 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_19 PF13245.1 gi|296242922|ref|YP_003650409.1| - 3e-08 33.3 2.4 0.014 15.1 0.1 3.6 3 0 0 3 3 3 2 Part of AAA domain RNA_helicase PF00910.17 gi|296242922|ref|YP_003650409.1| - 1.9e-07 31.1 0.0 0.0045 17.1 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|296242922|ref|YP_003650409.1| - 2.2e-07 30.4 10.2 0.092 12.1 0.1 5.1 3 2 0 4 4 4 2 AAA domain Mg_chelatase PF01078.16 gi|296242922|ref|YP_003650409.1| - 3.3e-07 29.6 1.0 0.014 14.5 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Arch_ATPase PF01637.13 gi|296242922|ref|YP_003650409.1| - 3e-06 27.1 0.1 0.0018 17.9 0.0 3.0 2 1 1 3 3 2 1 Archaeal ATPase KaiC PF06745.8 gi|296242922|ref|YP_003650409.1| - 4.5e-06 25.9 3.2 0.28 10.2 0.0 4.5 3 2 0 5 5 5 2 KaiC AAA_3 PF07726.6 gi|296242922|ref|YP_003650409.1| - 7.4e-06 25.6 0.0 0.1 12.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|296242922|ref|YP_003650409.1| - 1.8e-05 24.7 0.0 0.26 11.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|296242922|ref|YP_003650409.1| - 2e-05 24.9 0.0 0.24 11.7 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.21 gi|296242922|ref|YP_003650409.1| - 2.7e-05 23.7 0.0 0.37 10.2 0.0 3.3 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_24 PF13479.1 gi|296242922|ref|YP_003650409.1| - 3e-05 23.7 2.6 0.04 13.4 0.2 2.6 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|296242922|ref|YP_003650409.1| - 3.2e-05 22.9 0.1 0.04 12.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|296242922|ref|YP_003650409.1| - 3.3e-05 23.2 0.9 0.14 11.4 0.1 2.6 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.7 gi|296242922|ref|YP_003650409.1| - 6.1e-05 22.7 1.4 0.27 10.8 0.0 3.6 4 0 0 4 4 3 1 NACHT domain DUF815 PF05673.8 gi|296242922|ref|YP_003650409.1| - 7.3e-05 21.8 0.0 0.24 10.2 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|296242922|ref|YP_003650409.1| - 9.8e-05 21.4 0.0 0.049 12.6 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|296242922|ref|YP_003650409.1| - 0.00017 21.2 0.0 0.019 14.6 0.0 2.7 2 2 0 2 2 2 1 Bacterial dnaA protein UPF0079 PF02367.12 gi|296242922|ref|YP_003650409.1| - 0.00024 20.7 0.0 0.31 10.6 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 SKI PF01202.17 gi|296242922|ref|YP_003650409.1| - 0.00047 20.0 0.0 0.67 9.8 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase T2SE PF00437.15 gi|296242922|ref|YP_003650409.1| - 0.00072 18.5 0.0 0.26 10.1 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein KTI12 PF08433.5 gi|296242922|ref|YP_003650409.1| - 0.0013 18.0 0.1 3.1 6.9 0.0 3.2 3 0 0 3 3 3 0 Chromatin associated protein KTI12 AAA_11 PF13086.1 gi|296242922|ref|YP_003650409.1| - 0.0019 17.7 0.0 1.5 8.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|296242922|ref|YP_003650409.1| - 0.0056 15.5 0.1 2 7.2 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain ResIII PF04851.10 gi|296242922|ref|YP_003650409.1| - 0.0069 16.2 0.0 5 6.9 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|296242922|ref|YP_003650409.1| - 0.0079 15.3 0.4 3.4 6.7 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase ATP-synt_ab PF00006.20 gi|296242922|ref|YP_003650409.1| - 0.0082 15.6 0.0 2.8 7.3 0.0 2.6 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|296242922|ref|YP_003650409.1| - 0.01 15.2 1.7 1.5 8.1 0.0 3.3 3 2 1 4 4 3 0 AAA-like domain KAP_NTPase PF07693.9 gi|296242922|ref|YP_003650409.1| - 0.012 14.5 0.1 1.7 7.5 0.0 2.7 2 1 1 3 3 3 0 KAP family P-loop domain Cytidylate_kin2 PF13189.1 gi|296242922|ref|YP_003650409.1| - 0.013 15.4 0.0 0.51 10.2 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_30 PF13604.1 gi|296242922|ref|YP_003650409.1| - 0.015 14.8 0.0 5.9 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|296242922|ref|YP_003650409.1| - 0.025 14.2 5.4 9.6 5.8 0.0 4.3 4 1 1 5 5 3 0 NTPase PduV-EutP PF10662.4 gi|296242922|ref|YP_003650409.1| - 0.028 13.8 0.0 5.5 6.4 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AFG1_ATPase PF03969.11 gi|296242922|ref|YP_003650409.1| - 0.041 12.6 0.0 8.1 5.1 0.0 2.8 3 0 0 3 3 3 0 AFG1-like ATPase eIF-1a PF01176.14 gi|296242922|ref|YP_003650409.1| - 0.063 12.6 0.0 0.21 11.0 0.0 2.0 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Viral_helicase1 PF01443.13 gi|296242922|ref|YP_003650409.1| - 0.08 12.4 0.0 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.1 gi|296242922|ref|YP_003650409.1| - 0.092 12.2 0.0 15 5.1 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Rad17 PF03215.10 gi|296242922|ref|YP_003650409.1| - 0.1 11.2 0.0 3.5 6.1 0.0 2.2 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein Guanylate_kin PF00625.16 gi|296242922|ref|YP_003650409.1| - 0.11 11.9 0.3 27 4.1 0.0 3.4 2 2 2 4 4 4 0 Guanylate kinase AAA_23 PF13476.1 gi|296242922|ref|YP_003650409.1| - 0.19 12.0 0.1 13 6.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|296242922|ref|YP_003650409.1| - 0.29 10.0 0.1 6.2 5.6 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase AAA_21 PF13304.1 gi|296242922|ref|YP_003650409.1| - 0.56 10.1 4.3 3.6 7.4 0.1 3.0 2 2 1 3 3 3 0 AAA domain Helicase_RecD PF05127.9 gi|296242923|ref|YP_003650410.1| - 1.4e-54 184.3 0.0 2.5e-54 183.5 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|296242923|ref|YP_003650410.1| - 3.8e-50 169.9 0.0 2.1e-49 167.5 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|296242923|ref|YP_003650410.1| - 7.5e-28 96.0 0.0 6e-27 93.1 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.19 gi|296242923|ref|YP_003650410.1| - 5.3e-09 35.9 0.0 2.2e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|296242923|ref|YP_003650410.1| - 1.6e-07 31.3 0.0 5.7e-07 29.6 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain tRNA_bind_2 PF13725.1 gi|296242923|ref|YP_003650410.1| - 1.3e-06 28.4 0.0 5.2e-05 23.2 0.0 2.5 2 0 0 2 2 2 1 Possible tRNA binding domain Acetyltransf_9 PF13527.1 gi|296242923|ref|YP_003650410.1| - 0.087 12.6 0.0 1.3 8.8 0.0 2.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Glyco_hydro_4 PF02056.11 gi|296242924|ref|YP_003650411.1| - 2.3e-45 154.1 0.0 3.4e-45 153.6 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|296242924|ref|YP_003650411.1| - 2.4e-28 99.5 0.0 4.5e-28 98.6 0.0 1.5 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.18 gi|296242924|ref|YP_003650411.1| - 0.0031 17.3 0.3 1.5 8.6 0.0 2.5 2 0 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain Radical_SAM PF04055.16 gi|296242925|ref|YP_003650412.1| - 7.4e-13 49.0 0.0 1.4e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|296242925|ref|YP_003650412.1| - 2e-07 31.2 0.1 3.9e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|296242925|ref|YP_003650412.1| - 3.3e-05 23.8 0.0 3.3e-05 23.8 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain KaiC PF06745.8 gi|296242926|ref|YP_003650413.1| - 3e-56 190.1 0.1 3.4e-56 189.9 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|296242926|ref|YP_003650413.1| - 8.9e-10 38.2 0.0 1.3e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|296242926|ref|YP_003650413.1| - 4e-07 28.7 0.1 7e-07 27.9 0.1 1.3 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|296242926|ref|YP_003650413.1| - 8.4e-05 21.7 0.1 0.00016 20.8 0.0 1.5 2 0 0 2 2 2 1 recA bacterial DNA recombination protein MEDS PF14417.1 gi|296242926|ref|YP_003650413.1| - 0.00015 20.8 0.0 0.00023 20.2 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.6 gi|296242926|ref|YP_003650413.1| - 0.00075 18.4 0.1 0.0014 17.5 0.1 1.6 1 1 0 1 1 1 1 Rad51 IstB_IS21 PF01695.12 gi|296242926|ref|YP_003650413.1| - 0.003 17.0 0.0 0.0055 16.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|296242926|ref|YP_003650413.1| - 0.016 14.9 0.2 0.088 12.5 0.1 2.3 3 1 0 3 3 3 0 Part of AAA domain ATP-synt_ab PF00006.20 gi|296242926|ref|YP_003650413.1| - 0.062 12.7 0.2 0.11 11.9 0.1 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DnaB_C PF03796.10 gi|296242926|ref|YP_003650413.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF2075 PF09848.4 gi|296242926|ref|YP_003650413.1| - 0.15 10.9 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sua5_yciO_yrdC PF01300.13 gi|296242927|ref|YP_003650414.1| - 6.5e-61 204.6 0.0 8.8e-61 204.2 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|296242927|ref|YP_003650414.1| - 8.1e-31 106.7 0.0 1.2e-30 106.1 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Peptidase_S8 PF00082.17 gi|296242928|ref|YP_003650415.1| - 2.1e-24 86.1 21.9 7.6e-24 84.3 15.2 2.0 1 1 0 1 1 1 1 Subtilase family VCBS PF13517.1 gi|296242928|ref|YP_003650415.1| - 0.003 17.8 0.9 0.041 14.2 0.7 3.1 1 1 0 1 1 1 1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Inhibitor_I9 PF05922.11 gi|296242928|ref|YP_003650415.1| - 0.24 11.9 0.0 0.49 10.9 0.0 1.4 1 0 0 1 1 1 0 Peptidase inhibitor I9 FG-GAP PF01839.18 gi|296242928|ref|YP_003650415.1| - 0.84 9.4 15.3 0.78 9.5 3.6 3.5 3 0 0 3 3 3 0 FG-GAP repeat UPRTase PF14681.1 gi|296242929|ref|YP_003650416.1| - 4.4e-43 146.8 0.1 5e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|296242929|ref|YP_003650416.1| - 1.8e-06 27.6 0.5 3.5e-06 26.7 0.3 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|296242929|ref|YP_003650416.1| - 0.017 14.4 0.1 0.023 13.9 0.1 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase NTP_transferase PF00483.18 gi|296242930|ref|YP_003650417.1| - 8.9e-26 90.6 0.0 1e-25 90.5 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|296242930|ref|YP_003650417.1| - 2.1e-10 40.9 0.0 2.6e-10 40.6 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain MatE PF01554.13 gi|296242931|ref|YP_003650418.1| - 3.3e-52 176.3 22.6 6.9e-33 113.5 2.0 2.3 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|296242931|ref|YP_003650418.1| - 1.1e-11 44.7 4.2 1.1e-11 44.7 2.9 4.4 3 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Cation_efflux PF01545.16 gi|296242932|ref|YP_003650419.1| - 1.7e-35 122.4 13.4 2e-35 122.2 9.3 1.0 1 0 0 1 1 1 1 Cation efflux family T2SF PF00482.18 gi|296242933|ref|YP_003650420.1| - 1.7e-12 47.2 2.3 1.4e-06 28.2 0.1 3.7 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|296242934|ref|YP_003650421.1| - 1.5e-44 151.9 0.0 2.3e-44 151.3 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|296242934|ref|YP_003650421.1| - 5.2e-05 22.6 0.0 9.5e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|296242934|ref|YP_003650421.1| - 0.00052 20.8 0.1 0.0027 18.5 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.1 gi|296242934|ref|YP_003650421.1| - 0.0049 17.0 0.0 0.018 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|296242934|ref|YP_003650421.1| - 0.039 13.4 0.1 0.11 11.9 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family PCMT PF01135.14 gi|296242934|ref|YP_003650421.1| - 0.045 13.2 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ABC_tran PF00005.22 gi|296242934|ref|YP_003650421.1| - 0.081 13.2 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 ABC transporter DEAD PF00270.24 gi|296242934|ref|YP_003650421.1| - 0.09 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase 3H PF02829.9 gi|296242934|ref|YP_003650421.1| - 0.1 12.5 0.0 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 3H domain AAA_23 PF13476.1 gi|296242934|ref|YP_003650421.1| - 3.4 7.9 5.1 0.54 10.5 0.2 2.0 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|296242935|ref|YP_003650422.1| - 2.7e-21 75.7 0.3 3.2e-21 75.5 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|296242935|ref|YP_003650422.1| - 7.6e-06 25.4 0.1 1.3e-05 24.6 0.1 1.3 1 1 0 1 1 1 1 AAA domain PAXNEB PF05625.6 gi|296242935|ref|YP_003650422.1| - 6e-05 22.0 0.3 0.0052 15.6 0.2 2.1 2 0 0 2 2 2 1 PAXNEB protein NACHT PF05729.7 gi|296242935|ref|YP_003650422.1| - 9.1e-05 22.1 0.2 0.00022 20.9 0.1 1.6 1 1 0 1 1 1 1 NACHT domain IstB_IS21 PF01695.12 gi|296242935|ref|YP_003650422.1| - 0.0022 17.4 0.9 0.38 10.1 0.1 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein DnaB_C PF03796.10 gi|296242935|ref|YP_003650422.1| - 0.0047 15.8 0.0 0.011 14.6 0.0 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_28 PF13521.1 gi|296242935|ref|YP_003650422.1| - 0.012 15.5 0.2 0.019 14.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|296242935|ref|YP_003650422.1| - 0.013 14.5 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|296242935|ref|YP_003650422.1| - 0.013 15.3 0.3 0.17 11.7 0.2 2.4 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|296242935|ref|YP_003650422.1| - 0.014 15.1 0.4 0.021 14.5 0.3 1.3 1 1 0 1 1 1 0 NTPase Rad51 PF08423.6 gi|296242935|ref|YP_003650422.1| - 0.025 13.4 0.3 0.097 11.5 0.2 2.1 1 1 0 1 1 1 0 Rad51 Ras PF00071.17 gi|296242935|ref|YP_003650422.1| - 0.027 13.8 0.4 0.044 13.1 0.2 1.3 1 0 0 1 1 1 0 Ras family Miro PF08477.8 gi|296242935|ref|YP_003650422.1| - 0.033 14.6 0.1 0.058 13.8 0.1 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_19 PF13245.1 gi|296242935|ref|YP_003650422.1| - 0.035 13.8 0.6 0.073 12.8 0.4 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|296242935|ref|YP_003650422.1| - 0.043 13.9 0.1 0.07 13.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|296242935|ref|YP_003650422.1| - 0.055 12.8 0.8 0.12 11.7 0.6 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF835 PF05763.7 gi|296242935|ref|YP_003650422.1| - 0.058 12.9 0.1 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) DAP3 PF10236.4 gi|296242935|ref|YP_003650422.1| - 0.063 12.1 0.2 0.098 11.5 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_33 PF13671.1 gi|296242935|ref|YP_003650422.1| - 0.065 13.1 0.0 0.086 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|296242935|ref|YP_003650422.1| - 0.14 11.6 0.1 0.22 11.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain Arch_flagellin PF01917.11 gi|296242937|ref|YP_003650424.1| - 3.6e-05 23.4 8.3 0.00014 21.5 5.8 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin Baculo_PEP_C PF04513.7 gi|296242937|ref|YP_003650424.1| - 0.078 12.8 0.8 0.11 12.3 0.5 1.2 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus YusW PF14039.1 gi|296242938|ref|YP_003650425.1| - 0.015 15.5 0.4 0.33 11.2 0.2 2.5 2 1 0 2 2 2 0 YusW-like protein Arch_flagellin PF01917.11 gi|296242940|ref|YP_003650427.1| - 1.1e-28 100.1 2.0 1.4e-28 99.8 1.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF948 PF06103.6 gi|296242940|ref|YP_003650427.1| - 0.069 13.0 0.4 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) PAPS_reduct PF01507.14 gi|296242941|ref|YP_003650428.1| - 4e-36 124.4 0.0 5.8e-36 123.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Asn_synthase PF00733.16 gi|296242941|ref|YP_003650428.1| - 6.5e-05 22.5 0.1 9.7e-05 21.9 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|296242941|ref|YP_003650428.1| - 0.00022 20.2 0.1 0.0003 19.7 0.0 1.1 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|296242941|ref|YP_003650428.1| - 0.11 11.8 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|296242941|ref|YP_003650428.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Epimerase PF01370.16 gi|296242942|ref|YP_003650429.1| - 1e-51 175.7 0.0 1.4e-51 175.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|296242942|ref|YP_003650429.1| - 6.8e-22 77.4 0.0 8.7e-22 77.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|296242942|ref|YP_003650429.1| - 3.5e-18 65.4 0.0 4.1e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|296242942|ref|YP_003650429.1| - 1e-14 54.1 0.0 4e-14 52.2 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|296242942|ref|YP_003650429.1| - 3.9e-14 53.0 0.0 3.7e-13 49.8 0.0 2.0 1 1 1 2 2 2 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|296242942|ref|YP_003650429.1| - 5.4e-13 48.4 0.2 1.2e-11 44.0 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.8 gi|296242942|ref|YP_003650429.1| - 4.3e-11 42.5 0.0 2.9e-10 39.7 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|296242942|ref|YP_003650429.1| - 6.5e-08 32.6 0.3 3.6e-07 30.2 0.2 2.2 1 1 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.13 gi|296242942|ref|YP_003650429.1| - 7.6e-05 22.6 0.0 0.00013 21.9 0.0 1.3 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|296242942|ref|YP_003650429.1| - 0.0056 16.3 0.6 0.03 13.9 0.4 2.0 1 1 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|296242942|ref|YP_003650429.1| - 0.12 11.3 0.0 0.21 10.5 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase ThiF PF00899.16 gi|296242942|ref|YP_003650429.1| - 0.15 11.9 0.3 8 6.2 0.2 2.4 2 0 0 2 2 2 0 ThiF family FeoB_N PF02421.13 gi|296242943|ref|YP_003650430.1| - 6.2e-47 158.7 0.0 1.1e-46 158.0 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|296242943|ref|YP_003650430.1| - 4.9e-24 84.3 21.7 3.2e-17 62.4 3.2 3.2 3 1 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|296242943|ref|YP_003650430.1| - 9.3e-17 61.0 0.0 1.8e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|296242943|ref|YP_003650430.1| - 2.3e-05 23.6 0.1 8.5e-05 21.8 0.0 1.8 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|296242943|ref|YP_003650430.1| - 0.0016 18.8 0.0 0.0029 18.1 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein FeoB_C PF07664.7 gi|296242943|ref|YP_003650430.1| - 0.0019 17.6 0.9 0.0019 17.6 0.6 3.9 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus GTP_EFTU PF00009.22 gi|296242943|ref|YP_003650430.1| - 0.0088 15.4 0.0 0.3 10.5 0.0 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|296242943|ref|YP_003650430.1| - 0.01 15.6 0.1 0.42 10.4 0.0 2.2 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.4 gi|296242943|ref|YP_003650430.1| - 0.048 13.1 0.0 0.27 10.7 0.0 2.2 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation FeoA PF04023.9 gi|296242944|ref|YP_003650431.1| - 2e-13 50.0 1.0 2.3e-13 49.9 0.7 1.0 1 0 0 1 1 1 1 FeoA domain Abhydrolase_6 PF12697.2 gi|296242945|ref|YP_003650432.1| - 3.1e-39 135.1 0.1 3.8e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|296242945|ref|YP_003650432.1| - 1.4e-23 83.6 0.0 3e-22 79.3 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|296242945|ref|YP_003650432.1| - 4.7e-22 78.3 0.0 4.4e-21 75.1 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|296242945|ref|YP_003650432.1| - 2.1e-12 46.1 0.0 2.8e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 Ndr family Esterase PF00756.15 gi|296242945|ref|YP_003650432.1| - 1.7e-06 27.6 0.0 2.5e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Abhydrolase_2 PF02230.11 gi|296242945|ref|YP_003650432.1| - 5.3e-06 26.0 0.0 0.075 12.4 0.0 3.1 3 0 0 3 3 3 2 Phospholipase/Carboxylesterase Ser_hydrolase PF06821.8 gi|296242945|ref|YP_003650432.1| - 5.4e-06 26.1 0.0 0.028 14.0 0.0 2.2 2 0 0 2 2 2 2 Serine hydrolase Peptidase_S9 PF00326.16 gi|296242945|ref|YP_003650432.1| - 2.3e-05 23.7 0.0 0.052 12.7 0.0 2.1 2 0 0 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_3 PF07859.8 gi|296242945|ref|YP_003650432.1| - 0.00066 19.3 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Lipase_3 PF01764.20 gi|296242945|ref|YP_003650432.1| - 0.0046 16.5 0.0 0.008 15.7 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 3) Abhydrolase_4 PF08386.5 gi|296242945|ref|YP_003650432.1| - 0.017 15.0 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Esterase_phd PF10503.4 gi|296242945|ref|YP_003650432.1| - 0.017 14.3 0.1 0.33 10.1 0.0 2.1 2 0 0 2 2 2 0 Esterase PHB depolymerase DUF1057 PF06342.7 gi|296242945|ref|YP_003650432.1| - 0.019 13.7 0.0 0.037 12.8 0.0 1.4 2 0 0 2 2 2 0 Alpha/beta hydrolase of unknown function (DUF1057) Chlorophyllase2 PF12740.2 gi|296242945|ref|YP_003650432.1| - 0.12 11.2 0.2 0.53 9.1 0.1 1.8 1 1 0 1 1 1 0 Chlorophyllase enzyme PGAP1 PF07819.8 gi|296242945|ref|YP_003650432.1| - 0.16 11.5 0.1 0.42 10.1 0.0 1.7 2 0 0 2 2 2 0 PGAP1-like protein Ipi1_N PF12333.3 gi|296242946|ref|YP_003650433.1| - 0.043 13.7 0.0 0.05 13.5 0.0 1.1 1 0 0 1 1 1 0 Rix1 complex component involved in 60S ribosome maturation NIR_SIR PF01077.17 gi|296242946|ref|YP_003650433.1| - 0.069 12.5 0.0 0.081 12.2 0.0 1.1 1 0 0 1 1 1 0 Nitrite and sulphite reductase 4Fe-4S domain DOG1 PF14144.1 gi|296242946|ref|YP_003650433.1| - 0.085 12.9 0.1 0.11 12.5 0.0 1.3 1 1 0 1 1 1 0 Seed dormancy control zf-FCS PF06467.9 gi|296242946|ref|YP_003650433.1| - 0.12 11.9 0.4 0.27 10.8 0.2 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DNA_pol3_theta PF06440.6 gi|296242946|ref|YP_003650433.1| - 0.13 11.8 0.2 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 DNA polymerase III, theta subunit DUF2208 PF09973.4 gi|296242947|ref|YP_003650434.1| - 2.5e-36 125.0 7.6 3.1e-36 124.7 5.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) Steroid_dh PF02544.11 gi|296242947|ref|YP_003650434.1| - 0.067 12.9 0.5 0.067 12.9 0.4 2.7 3 1 0 3 3 3 0 3-oxo-5-alpha-steroid 4-dehydrogenase DUF3784 PF12650.2 gi|296242947|ref|YP_003650434.1| - 0.81 9.6 15.3 0.24 11.3 1.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3784) DUF72 PF01904.13 gi|296242949|ref|YP_003650436.1| - 1.1e-39 136.5 0.0 1.3e-39 136.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|296242949|ref|YP_003650436.1| - 0.048 12.9 0.0 0.068 12.4 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel ACT PF01842.20 gi|296242950|ref|YP_003650437.1| - 1.1e-08 34.3 0.0 2.2e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 ACT domain Antitoxin-MazE PF04014.13 gi|296242950|ref|YP_003650437.1| - 2.7e-06 26.9 0.2 5e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE ACT_6 PF13740.1 gi|296242950|ref|YP_003650437.1| - 9.5e-05 22.0 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|296242950|ref|YP_003650437.1| - 0.00011 22.4 0.0 0.00022 21.4 0.0 1.6 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|296242950|ref|YP_003650437.1| - 0.012 15.1 0.0 0.032 13.7 0.0 1.7 2 0 0 2 2 2 0 ACT domain MraZ PF02381.13 gi|296242950|ref|YP_003650437.1| - 0.027 14.2 0.0 0.046 13.4 0.0 1.3 1 0 0 1 1 1 0 MraZ protein Pribosyltran PF00156.22 gi|296242951|ref|YP_003650438.1| - 4.9e-10 39.1 0.3 8.6e-10 38.4 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|296242951|ref|YP_003650438.1| - 0.00039 20.1 0.2 0.0016 18.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix DUF1641 PF07849.6 gi|296242951|ref|YP_003650438.1| - 0.0038 16.8 0.1 0.0073 15.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HTH_31 PF13560.1 gi|296242951|ref|YP_003650438.1| - 0.043 14.0 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Glyco_hydro_39 PF01229.12 gi|296242951|ref|YP_003650438.1| - 0.071 11.4 0.0 0.099 11.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 39 MRG PF05712.8 gi|296242952|ref|YP_003650439.1| - 0.027 13.3 0.0 0.033 13.0 0.0 1.1 1 0 0 1 1 1 0 MRG ResIII PF04851.10 gi|296242953|ref|YP_003650440.1| - 1.5e-17 64.0 0.0 2.4e-16 60.1 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|296242953|ref|YP_003650440.1| - 2.6e-17 62.4 0.0 1.6e-16 59.8 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|296242953|ref|YP_003650440.1| - 1.3e-07 31.2 0.0 3.7e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|296242953|ref|YP_003650440.1| - 0.006 15.4 0.0 0.019 13.7 0.0 1.8 1 1 0 1 1 1 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|296242953|ref|YP_003650440.1| - 0.12 12.1 0.1 4 7.2 0.0 2.7 3 1 0 3 3 3 0 Part of AAA domain Alba PF01918.16 gi|296242955|ref|YP_003650442.1| - 1.8e-18 65.9 0.6 2.3e-18 65.5 0.4 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.3 gi|296242955|ref|YP_003650442.1| - 0.044 13.4 0.1 0.058 13.0 0.1 1.4 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Topoisom_bac PF01131.15 gi|296242956|ref|YP_003650443.1| - 5.3e-78 262.6 0.0 7.4e-78 262.1 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|296242956|ref|YP_003650443.1| - 4.4e-21 74.7 0.0 1.2e-20 73.3 0.0 1.8 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|296242956|ref|YP_003650443.1| - 6.7e-15 54.9 0.0 1.6e-13 50.5 0.0 2.9 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|296242956|ref|YP_003650443.1| - 9.4e-07 28.5 0.1 3.6e-06 26.6 0.0 2.1 2 0 0 2 2 1 1 Part of AAA domain ResIII PF04851.10 gi|296242956|ref|YP_003650443.1| - 2.5e-06 27.4 0.0 5.5e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|296242956|ref|YP_003650443.1| - 2e-05 24.7 0.5 0.00015 21.9 0.4 2.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|296242956|ref|YP_003650443.1| - 4.5e-05 22.9 0.0 0.00011 21.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|296242956|ref|YP_003650443.1| - 0.00011 21.6 0.0 0.00031 20.2 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.1 gi|296242956|ref|YP_003650443.1| - 0.0003 20.4 0.0 0.00068 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain OGG_N PF07934.7 gi|296242956|ref|YP_003650443.1| - 0.00035 20.5 0.1 0.001 18.9 0.1 1.8 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain Toprim_4 PF13662.1 gi|296242956|ref|YP_003650443.1| - 0.00068 19.5 0.0 0.0031 17.4 0.0 2.2 2 0 0 2 2 1 1 Toprim domain PhoH PF02562.11 gi|296242956|ref|YP_003650443.1| - 0.0018 17.5 0.0 0.0044 16.2 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein DZR PF12773.2 gi|296242956|ref|YP_003650443.1| - 0.0029 17.3 5.6 0.071 12.9 0.8 2.3 2 0 0 2 2 2 1 Double zinc ribbon AAA_23 PF13476.1 gi|296242956|ref|YP_003650443.1| - 0.0029 17.9 0.9 0.0067 16.7 0.6 1.6 1 0 0 1 1 1 1 AAA domain OrfB_Zn_ribbon PF07282.6 gi|296242956|ref|YP_003650443.1| - 0.0052 16.4 8.6 0.17 11.5 0.2 3.3 3 0 0 3 3 3 2 Putative transposase DNA-binding domain AAA_11 PF13086.1 gi|296242956|ref|YP_003650443.1| - 0.0078 15.8 0.1 0.18 11.3 0.0 2.4 1 1 1 2 2 2 1 AAA domain Helicase_C PF00271.26 gi|296242956|ref|YP_003650443.1| - 0.01 15.6 0.0 1.6 8.6 0.0 3.0 2 0 0 2 2 2 0 Helicase conserved C-terminal domain DUF3279 PF11682.3 gi|296242956|ref|YP_003650443.1| - 0.011 15.3 0.5 0.024 14.2 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) AAA_10 PF12846.2 gi|296242956|ref|YP_003650443.1| - 0.016 14.7 0.0 0.2 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain zinc-ribbons_6 PF07191.7 gi|296242956|ref|YP_003650443.1| - 0.023 14.4 4.3 1.5 8.6 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbons HypA PF01155.14 gi|296242956|ref|YP_003650443.1| - 0.024 14.2 1.0 0.68 9.6 0.0 2.5 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family SopA PF13981.1 gi|296242956|ref|YP_003650443.1| - 0.087 12.8 0.1 0.25 11.3 0.1 1.9 1 0 0 1 1 1 0 SopA-like central domain DUF1272 PF06906.6 gi|296242956|ref|YP_003650443.1| - 0.26 11.1 3.1 4 7.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Lar_restr_allev PF14354.1 gi|296242956|ref|YP_003650443.1| - 1.3 9.4 5.6 2.8 8.2 0.1 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar Rad50_zn_hook PF04423.9 gi|296242956|ref|YP_003650443.1| - 1.6 8.2 5.7 3.3 7.2 0.1 3.0 2 0 0 2 2 2 0 Rad50 zinc hook motif Prok-RING_1 PF14446.1 gi|296242956|ref|YP_003650443.1| - 1.8 8.3 8.5 2.3 8.0 0.8 2.6 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 Alba PF01918.16 gi|296242957|ref|YP_003650444.1| - 4.6e-07 29.3 0.1 6.5e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Alba DUF367 PF04034.8 gi|296242958|ref|YP_003650445.1| - 2e-34 117.9 0.0 2.3e-34 117.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF367) DUF1869 PF08956.5 gi|296242958|ref|YP_003650445.1| - 0.09 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1869) AsnC_trans_reg PF01037.16 gi|296242959|ref|YP_003650446.1| - 8e-16 57.5 2.4 9.1e-16 57.3 1.7 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|296242959|ref|YP_003650446.1| - 0.0087 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 GYD domain HMA PF00403.21 gi|296242959|ref|YP_003650446.1| - 0.018 15.1 1.0 0.026 14.6 0.6 1.4 1 1 0 1 1 1 0 Heavy-metal-associated domain Leuk-A4-hydro_C PF09127.6 gi|296242959|ref|YP_003650446.1| - 0.047 13.2 0.0 0.062 12.8 0.0 1.1 1 0 0 1 1 1 0 Leukotriene A4 hydrolase, C-terminal SnoaL PF07366.7 gi|296242959|ref|YP_003650446.1| - 0.1 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 SnoaL-like polyketide cyclase Spore_YhcN_YlaJ PF09580.5 gi|296242959|ref|YP_003650446.1| - 0.17 11.9 2.3 0.2 11.7 1.6 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) tRNA-synt_1b PF00579.20 gi|296242960|ref|YP_003650447.1| - 5.3e-49 166.9 0.0 1.2e-47 162.5 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Lactamase_B_3 PF13483.1 gi|296242961|ref|YP_003650448.1| - 1.1e-24 86.9 0.1 1.4e-24 86.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|296242961|ref|YP_003650448.1| - 6.7e-21 74.7 0.0 8.3e-21 74.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|296242961|ref|YP_003650448.1| - 9.5e-13 48.2 2.9 1.5e-12 47.5 2.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.19 gi|296242962|ref|YP_003650449.1| - 4.1e-41 140.8 0.0 5.4e-41 140.4 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 TPR_16 PF13432.1 gi|296242962|ref|YP_003650449.1| - 0.11 13.2 1.5 5.4 7.8 0.3 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF1512 PF07431.7 gi|296242963|ref|YP_003650450.1| - 6.2e-115 383.7 8.0 7.4e-115 383.4 5.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) zinc_ribbon_2 PF13240.1 gi|296242964|ref|YP_003650451.1| - 0.014 14.9 3.2 0.47 10.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|296242964|ref|YP_003650451.1| - 0.018 14.9 1.0 1.5 8.8 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|296242964|ref|YP_003650451.1| - 0.035 13.8 1.1 2.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.2 gi|296242964|ref|YP_003650451.1| - 0.057 13.4 0.5 0.33 10.9 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2089 PF09862.4 gi|296242964|ref|YP_003650451.1| - 0.058 13.1 0.1 0.12 12.2 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) zf-C4_Topoisom PF01396.14 gi|296242964|ref|YP_003650451.1| - 0.092 12.2 0.5 0.092 12.2 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|296242964|ref|YP_003650451.1| - 0.099 12.4 0.9 0.46 10.3 0.6 1.9 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|296242964|ref|YP_003650451.1| - 0.13 12.0 0.7 5.3 6.9 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Nop10p PF04135.7 gi|296242964|ref|YP_003650451.1| - 0.15 11.7 1.2 0.85 9.4 0.1 2.1 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-TFIIB PF13453.1 gi|296242964|ref|YP_003650451.1| - 0.28 10.3 2.4 0.83 8.9 1.8 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger ADK_lid PF05191.9 gi|296242964|ref|YP_003650451.1| - 0.33 10.6 2.1 0.83 9.3 1.4 1.7 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|296242964|ref|YP_003650451.1| - 0.53 9.5 6.3 2.5 7.4 4.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain P12 PF12669.2 gi|296242964|ref|YP_003650451.1| - 0.62 10.2 3.1 0.4 10.8 0.2 1.9 2 0 0 2 2 2 0 Virus attachment protein p12 family DUF2387 PF09526.5 gi|296242964|ref|YP_003650451.1| - 0.88 9.5 3.9 1.1 9.2 0.1 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-tcix PF14952.1 gi|296242964|ref|YP_003650451.1| - 1.2 8.5 5.8 6.3 6.2 0.8 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.1 gi|296242964|ref|YP_003650451.1| - 6.1 6.7 6.2 16 5.3 0.0 2.5 3 0 0 3 3 2 0 YhfH-like protein DUF131 PF01998.12 gi|296242965|ref|YP_003650452.1| - 0.00031 20.0 10.3 0.00031 20.0 7.1 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF131 O-antigen_lig PF13425.1 gi|296242965|ref|YP_003650452.1| - 0.12 12.3 8.5 0.14 12.1 5.9 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein NfeD PF01957.13 gi|296242965|ref|YP_003650452.1| - 2 8.5 8.5 2.6 8.1 5.9 1.2 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding FixH PF05751.6 gi|296242965|ref|YP_003650452.1| - 2.3 8.0 4.0 1 9.1 0.2 2.0 2 0 0 2 2 2 0 FixH DUF1517 PF07466.6 gi|296242965|ref|YP_003650452.1| - 2.7 6.8 5.5 5.1 6.0 3.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1517) DUF131 PF01998.12 gi|296242966|ref|YP_003650453.1| - 1.6e-07 30.5 9.3 1.6e-07 30.5 6.5 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 Fig1 PF12351.3 gi|296242966|ref|YP_003650453.1| - 0.19 11.5 4.7 0.21 11.4 3.3 1.0 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF4131 PF13567.1 gi|296242966|ref|YP_003650453.1| - 1.6 8.0 3.9 2.1 7.7 2.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF202 PF02656.10 gi|296242966|ref|YP_003650453.1| - 3.8 7.8 7.5 2.9 8.1 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) Claudin_2 PF13903.1 gi|296242966|ref|YP_003650453.1| - 10 5.8 8.7 47 3.6 6.1 1.8 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF1805 PF08827.6 gi|296242967|ref|YP_003650454.1| - 5e-19 67.8 0.2 8.1e-19 67.1 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1805) PK PF00224.16 gi|296242968|ref|YP_003650455.1| - 3.9e-88 295.3 0.0 5.1e-88 295.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|296242968|ref|YP_003650455.1| - 2.5e-10 39.9 0.1 1.3e-09 37.6 0.0 2.1 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain F_bP_aldolase PF01116.15 gi|296242968|ref|YP_003650455.1| - 0.078 12.0 0.0 0.17 10.9 0.0 1.6 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-II E1-E2_ATPase PF00122.15 gi|296242969|ref|YP_003650456.1| - 2e-47 161.1 0.2 2e-47 161.1 0.1 2.5 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|296242969|ref|YP_003650456.1| - 1.6e-35 123.4 0.0 2.7e-35 122.7 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|296242969|ref|YP_003650456.1| - 3e-09 36.8 0.0 1.7e-06 28.0 0.0 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|296242969|ref|YP_003650456.1| - 3.4e-09 37.1 0.0 7e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|296242969|ref|YP_003650456.1| - 5.5e-08 32.6 0.1 7.7e-06 25.6 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase YHS PF04945.8 gi|296242970|ref|YP_003650457.1| - 7.4e-22 76.9 0.9 8.3e-22 76.7 0.6 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|296242970|ref|YP_003650457.1| - 0.00042 20.3 1.0 0.00055 20.0 0.7 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|296242970|ref|YP_003650457.1| - 0.00067 19.2 0.5 0.001 18.6 0.3 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|296242970|ref|YP_003650457.1| - 0.019 14.7 0.3 0.43 10.4 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ribosomal_L24e PF01246.15 gi|296242970|ref|YP_003650457.1| - 0.035 13.9 0.2 0.042 13.7 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e RPAP2_Rtr1 PF04181.8 gi|296242970|ref|YP_003650457.1| - 0.17 11.9 0.8 0.27 11.3 0.6 1.4 1 1 0 1 1 1 0 Rtr1/RPAP2 family TIM PF00121.13 gi|296242971|ref|YP_003650458.1| - 1.9e-31 109.0 0.0 1.9e-29 102.4 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|296242971|ref|YP_003650458.1| - 3.6e-05 22.9 0.7 6.6e-05 22.0 0.5 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|296242971|ref|YP_003650458.1| - 0.0053 15.8 0.0 0.0072 15.4 0.0 1.3 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|296242971|ref|YP_003650458.1| - 0.032 13.0 0.1 0.071 11.9 0.1 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase DHO_dh PF01180.16 gi|296242971|ref|YP_003650458.1| - 0.047 12.6 0.5 0.06 12.2 0.3 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase FBPase_3 PF01950.11 gi|296242972|ref|YP_003650459.1| - 4.1e-188 624.8 0.0 4.8e-188 624.6 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase ABC_tran PF00005.22 gi|296242973|ref|YP_003650460.1| - 4.7e-43 146.7 0.0 7.1e-23 81.4 0.0 2.4 2 0 0 2 2 2 2 ABC transporter RLI PF04068.10 gi|296242973|ref|YP_003650460.1| - 1.4e-13 50.1 3.9 3.6e-13 48.8 2.7 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.1 gi|296242973|ref|YP_003650460.1| - 2e-13 50.9 7.8 0.0015 18.5 1.5 4.2 2 2 1 3 3 3 3 AAA domain SMC_N PF02463.14 gi|296242973|ref|YP_003650460.1| - 6.8e-13 48.3 6.6 3.4e-05 23.1 0.7 3.6 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.22 gi|296242973|ref|YP_003650460.1| - 1.8e-09 36.8 3.7 1.8e-09 36.8 2.5 2.8 3 1 0 3 3 2 1 4Fe-4S binding domain AAA_17 PF13207.1 gi|296242973|ref|YP_003650460.1| - 1.8e-08 35.2 0.3 0.0022 18.8 0.0 2.9 2 1 0 2 2 2 2 AAA domain Fer4_6 PF12837.2 gi|296242973|ref|YP_003650460.1| - 1.1e-07 31.3 12.6 1.1e-06 28.2 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|296242973|ref|YP_003650460.1| - 5.9e-07 29.7 18.5 0.00014 22.1 5.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|296242973|ref|YP_003650460.1| - 2.5e-06 27.2 8.8 4.7e-06 26.3 6.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|296242973|ref|YP_003650460.1| - 3.3e-05 24.0 0.1 0.61 10.2 0.0 3.3 3 0 0 3 3 3 2 AAA domain Fer4_10 PF13237.1 gi|296242973|ref|YP_003650460.1| - 5.6e-05 22.8 21.1 0.00064 19.4 1.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain DUF258 PF03193.11 gi|296242973|ref|YP_003650460.1| - 6e-05 22.2 0.3 0.064 12.4 0.0 2.9 4 0 0 4 4 2 1 Protein of unknown function, DUF258 Fer4_9 PF13187.1 gi|296242973|ref|YP_003650460.1| - 0.00011 22.4 7.0 0.00025 21.2 4.8 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_29 PF13555.1 gi|296242973|ref|YP_003650460.1| - 0.00014 21.3 1.8 0.22 11.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain Fer4_2 PF12797.2 gi|296242973|ref|YP_003650460.1| - 0.00018 21.2 2.3 0.00018 21.2 1.6 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_33 PF13671.1 gi|296242973|ref|YP_003650460.1| - 0.0002 21.2 0.1 0.17 11.7 0.0 3.4 2 2 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|296242973|ref|YP_003650460.1| - 0.00028 21.1 3.4 0.5 10.6 0.4 3.1 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|296242973|ref|YP_003650460.1| - 0.0003 21.1 3.2 0.39 11.0 0.0 2.9 3 0 0 3 3 2 2 AAA domain SbcCD_C PF13558.1 gi|296242973|ref|YP_003650460.1| - 0.00034 20.4 0.5 2.6 7.9 0.0 3.5 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|296242973|ref|YP_003650460.1| - 0.00035 20.5 2.6 0.35 10.8 0.6 2.9 2 2 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|296242973|ref|YP_003650460.1| - 0.00039 20.6 0.0 0.62 10.2 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|296242973|ref|YP_003650460.1| - 0.0005 18.8 0.1 0.43 9.1 0.0 2.4 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein Miro PF08477.8 gi|296242973|ref|YP_003650460.1| - 0.0014 19.0 0.2 1.3 9.5 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein AAA_14 PF13173.1 gi|296242973|ref|YP_003650460.1| - 0.0031 17.4 0.2 0.34 10.7 0.0 3.1 3 1 0 3 3 2 1 AAA domain MobB PF03205.9 gi|296242973|ref|YP_003650460.1| - 0.0034 17.0 5.6 1.2 8.7 0.0 3.9 4 0 0 4 4 4 1 Molybdopterin guanine dinucleotide synthesis protein B KAP_NTPase PF07693.9 gi|296242973|ref|YP_003650460.1| - 0.0039 16.2 0.0 0.19 10.7 0.0 2.2 2 0 0 2 2 2 1 KAP family P-loop domain AAA_25 PF13481.1 gi|296242973|ref|YP_003650460.1| - 0.004 16.5 0.5 0.18 11.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|296242973|ref|YP_003650460.1| - 0.0044 16.9 0.3 0.41 10.6 0.0 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase Fer4_16 PF13484.1 gi|296242973|ref|YP_003650460.1| - 0.0052 17.5 1.7 0.0052 17.5 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|296242973|ref|YP_003650460.1| - 0.0052 16.7 4.2 0.014 15.4 3.0 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain RNA_helicase PF00910.17 gi|296242973|ref|YP_003650460.1| - 0.0056 16.8 0.1 1.3 9.2 0.0 2.6 2 0 0 2 2 2 1 RNA helicase Fer4_3 PF12798.2 gi|296242973|ref|YP_003650460.1| - 0.0059 17.0 4.4 0.0059 17.0 3.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Thymidylate_kin PF02223.12 gi|296242973|ref|YP_003650460.1| - 0.015 14.6 0.2 6.4 6.1 0.0 2.9 3 0 0 3 3 3 0 Thymidylate kinase AAA_15 PF13175.1 gi|296242973|ref|YP_003650460.1| - 0.015 14.3 0.0 2 7.3 0.0 3.2 4 0 0 4 4 4 0 AAA ATPase domain ArgK PF03308.11 gi|296242973|ref|YP_003650460.1| - 0.015 14.0 2.1 0.44 9.2 0.1 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_4 PF12800.2 gi|296242973|ref|YP_003650460.1| - 0.024 14.9 3.2 0.024 14.9 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.10 gi|296242973|ref|YP_003650460.1| - 0.038 13.7 2.3 1.8 8.2 0.1 2.9 2 0 0 2 2 2 0 NTPase Fer4_15 PF13459.1 gi|296242973|ref|YP_003650460.1| - 0.048 14.2 1.1 0.048 14.2 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain SRP54 PF00448.17 gi|296242973|ref|YP_003650460.1| - 0.082 12.3 1.3 4.6 6.6 0.2 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Ribophorin_I PF04597.9 gi|296242973|ref|YP_003650460.1| - 0.092 11.2 1.3 0.53 8.7 0.1 2.1 2 0 0 2 2 2 0 Ribophorin I Fer4_11 PF13247.1 gi|296242973|ref|YP_003650460.1| - 0.099 12.5 2.8 0.19 11.6 1.9 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_30 PF13604.1 gi|296242973|ref|YP_003650460.1| - 0.1 12.1 0.2 8.2 5.9 0.1 2.6 3 0 0 3 3 2 0 AAA domain AAA_28 PF13521.1 gi|296242973|ref|YP_003650460.1| - 0.12 12.3 1.9 24 4.8 0.0 3.6 3 1 0 3 3 3 0 AAA domain DUF359 PF04019.7 gi|296242973|ref|YP_003650460.1| - 0.12 11.7 1.1 0.67 9.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF359) Fer4_17 PF13534.1 gi|296242973|ref|YP_003650460.1| - 0.16 12.3 6.5 0.08 13.2 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_10 PF12846.2 gi|296242973|ref|YP_003650460.1| - 0.18 11.2 4.2 2.1 7.7 0.1 2.6 2 0 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|296242973|ref|YP_003650460.1| - 0.2 11.2 1.6 6.3 6.4 0.0 2.5 2 0 0 2 2 2 0 NACHT domain AAA_13 PF13166.1 gi|296242973|ref|YP_003650460.1| - 0.25 9.7 0.0 8.8 4.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|296242973|ref|YP_003650460.1| - 0.27 11.0 6.8 1.1 8.9 0.1 3.1 2 1 0 2 2 2 0 Domain of unknown function DUF87 ATP_bind_1 PF03029.12 gi|296242973|ref|YP_003650460.1| - 0.28 10.6 1.5 4.8 6.6 0.0 2.7 3 0 0 3 3 2 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.1 gi|296242973|ref|YP_003650460.1| - 0.33 10.5 4.0 4.7 6.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain Fer4_18 PF13746.1 gi|296242973|ref|YP_003650460.1| - 0.36 11.2 8.8 0.079 13.3 2.1 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain zf-NADH-PPase PF09297.6 gi|296242974|ref|YP_003650461.1| - 3e-07 29.8 1.5 5.9e-05 22.4 0.3 2.4 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|296242974|ref|YP_003650461.1| - 8.9e-06 25.2 0.7 1.5e-05 24.6 0.5 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|296242974|ref|YP_003650461.1| - 0.00025 20.4 4.5 0.24 10.9 0.4 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-TFIIB PF13453.1 gi|296242974|ref|YP_003650461.1| - 0.00028 20.0 1.0 0.00052 19.1 0.7 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|296242974|ref|YP_003650461.1| - 0.00034 19.6 2.1 0.12 11.6 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|296242974|ref|YP_003650461.1| - 0.001 18.7 0.7 0.0018 18.0 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|296242974|ref|YP_003650461.1| - 0.0011 18.5 1.1 0.13 11.9 0.1 2.2 2 0 0 2 2 2 1 Nudix N-terminal DUF2387 PF09526.5 gi|296242974|ref|YP_003650461.1| - 0.0037 17.1 0.1 0.0057 16.5 0.1 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.7 gi|296242974|ref|YP_003650461.1| - 0.0041 16.4 1.0 0.0072 15.6 0.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|296242974|ref|YP_003650461.1| - 0.0093 15.7 0.9 0.017 14.8 0.6 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|296242974|ref|YP_003650461.1| - 0.011 15.4 0.9 0.021 14.4 0.4 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|296242974|ref|YP_003650461.1| - 0.011 16.0 1.2 0.018 15.3 0.8 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-UDP PF14569.1 gi|296242974|ref|YP_003650461.1| - 0.018 14.7 0.1 0.021 14.5 0.1 1.2 1 0 0 1 1 1 0 Zinc-binding RING-finger IBR PF01485.16 gi|296242974|ref|YP_003650461.1| - 0.019 14.8 0.8 0.034 14.0 0.5 1.4 1 0 0 1 1 1 0 IBR domain TFIIS_C PF01096.13 gi|296242974|ref|YP_003650461.1| - 0.032 13.8 2.8 0.37 10.4 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|296242974|ref|YP_003650461.1| - 0.039 13.9 1.1 0.25 11.3 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C4_Topoisom PF01396.14 gi|296242974|ref|YP_003650461.1| - 0.046 13.2 4.5 0.081 12.4 3.1 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Ribosomal_L37ae PF01780.14 gi|296242974|ref|YP_003650461.1| - 0.067 13.0 2.2 0.54 10.1 0.2 2.0 1 1 1 2 2 2 0 Ribosomal L37ae protein family Mt_ATP-synt_D PF05873.7 gi|296242974|ref|YP_003650461.1| - 0.074 12.6 0.2 0.088 12.4 0.2 1.0 1 0 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) DNA_ligase_ZBD PF03119.11 gi|296242974|ref|YP_003650461.1| - 0.079 12.6 1.4 0.27 10.9 1.0 1.9 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF896 PF05979.7 gi|296242974|ref|YP_003650461.1| - 0.098 12.2 0.5 0.15 11.6 0.3 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF896) C1_1 PF00130.17 gi|296242974|ref|YP_003650461.1| - 0.1 12.3 0.8 0.15 11.8 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GFA PF04828.9 gi|296242974|ref|YP_003650461.1| - 0.11 12.4 1.3 3 7.8 0.3 2.3 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.4 gi|296242974|ref|YP_003650461.1| - 0.14 11.8 4.8 3.1 7.5 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|296242974|ref|YP_003650461.1| - 0.16 11.9 3.9 5.7 6.9 0.3 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.7 gi|296242974|ref|YP_003650461.1| - 0.2 11.4 5.8 1 9.2 4.2 1.9 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_recom PF13408.1 gi|296242974|ref|YP_003650461.1| - 0.31 11.3 7.3 5.6 7.3 5.1 2.1 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Rubredoxin PF00301.15 gi|296242974|ref|YP_003650461.1| - 0.51 10.2 3.2 3.3 7.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin zf-Mss51 PF13824.1 gi|296242974|ref|YP_003650461.1| - 0.57 10.0 2.6 3.7 7.4 1.8 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.14 gi|296242974|ref|YP_003650461.1| - 0.71 9.5 2.8 4.6 6.9 0.1 2.6 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family DUF1936 PF09151.5 gi|296242974|ref|YP_003650461.1| - 0.89 9.1 4.9 1.8 8.1 3.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) DUF1451 PF07295.6 gi|296242974|ref|YP_003650461.1| - 1 9.1 5.9 0.91 9.2 0.2 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) zf-tcix PF14952.1 gi|296242974|ref|YP_003650461.1| - 1.6 8.1 4.6 13 5.1 0.4 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ISL3 PF14690.1 gi|296242974|ref|YP_003650461.1| - 2.5 8.1 5.7 4.8 7.3 0.4 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NOB1_Zn_bind PF08772.6 gi|296242974|ref|YP_003650461.1| - 9.8 6.0 6.9 63 3.5 4.7 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_S17e PF00833.13 gi|296242975|ref|YP_003650462.1| - 4.2e-20 71.7 0.7 4.3e-20 71.6 0.5 1.0 1 0 0 1 1 1 1 Ribosomal S17 Toprim_4 PF13662.1 gi|296242977|ref|YP_003650464.1| - 1.1e-09 38.1 0.2 2.7e-09 36.9 0.2 1.7 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|296242977|ref|YP_003650464.1| - 8.4e-05 22.4 2.0 0.00018 21.3 0.1 2.5 2 2 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|296242977|ref|YP_003650464.1| - 0.0037 17.5 0.0 0.0095 16.2 0.0 1.7 1 1 0 1 1 1 1 Toprim-like Ribosomal_L37e PF01907.14 gi|296242978|ref|YP_003650465.1| - 2.2e-24 84.9 13.4 2.5e-24 84.8 9.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|296242978|ref|YP_003650465.1| - 0.0078 16.0 0.5 0.0093 15.7 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Stc1 PF12898.2 gi|296242978|ref|YP_003650465.1| - 0.039 13.9 0.3 0.04 13.9 0.2 1.2 1 0 0 1 1 1 0 Stc1 domain GCC2_GCC3 PF07699.8 gi|296242978|ref|YP_003650465.1| - 0.044 13.3 0.5 0.059 12.9 0.3 1.3 1 0 0 1 1 1 0 GCC2 and GCC3 NOB1_Zn_bind PF08772.6 gi|296242978|ref|YP_003650465.1| - 0.054 13.3 1.0 0.069 12.9 0.7 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Cript PF10235.4 gi|296242978|ref|YP_003650465.1| - 0.12 12.7 0.7 0.16 12.3 0.5 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT FYVE_2 PF02318.11 gi|296242978|ref|YP_003650465.1| - 0.17 11.7 1.1 0.19 11.6 0.8 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-ribbon_3 PF13248.1 gi|296242978|ref|YP_003650465.1| - 0.78 9.0 4.6 1.6 8.0 3.2 1.6 1 1 0 1 1 1 0 zinc-ribbon domain LSM PF01423.17 gi|296242979|ref|YP_003650466.1| - 1.1e-20 72.9 1.4 1.2e-20 72.7 0.9 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|296242979|ref|YP_003650466.1| - 0.0064 16.3 0.1 0.0079 16.0 0.1 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain PUA PF01472.15 gi|296242980|ref|YP_003650467.1| - 9e-20 70.1 0.1 1.2e-19 69.7 0.1 1.2 1 0 0 1 1 1 1 PUA domain GTP_EFTU_D2 PF03144.20 gi|296242980|ref|YP_003650467.1| - 0.023 14.8 0.1 2.4 8.3 0.0 2.5 2 0 0 2 2 2 0 Elongation factor Tu domain 2 zf-PARP PF00645.13 gi|296242980|ref|YP_003650467.1| - 0.077 13.2 0.1 0.32 11.2 0.0 1.9 2 0 0 2 2 2 0 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region DUF1947 PF09183.5 gi|296242980|ref|YP_003650467.1| - 0.15 11.8 0.3 0.28 10.9 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1947) FKBP_C PF00254.23 gi|296242981|ref|YP_003650468.1| - 3.7e-12 46.0 0.0 8.2e-12 44.9 0.0 1.6 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase MS_channel PF00924.13 gi|296242981|ref|YP_003650468.1| - 0.21 10.9 1.2 0.51 9.6 0.8 1.6 1 0 0 1 1 1 0 Mechanosensitive ion channel Fe-ADH_2 PF13685.1 gi|296242982|ref|YP_003650469.1| - 4.8e-68 229.1 0.4 5.9e-68 228.8 0.3 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|296242982|ref|YP_003650469.1| - 1.6e-24 86.2 2.4 4.1e-24 84.9 1.7 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|296242982|ref|YP_003650469.1| - 2.8e-11 42.8 0.0 3.5e-06 26.1 0.0 2.9 2 1 0 2 2 2 2 3-dehydroquinate synthase Proteasome PF00227.21 gi|296242983|ref|YP_003650470.1| - 1.9e-52 177.3 0.1 2.3e-52 177.0 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.3 gi|296242984|ref|YP_003650471.1| - 3.6e-31 107.7 0.0 7.6e-31 106.6 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|296242984|ref|YP_003650471.1| - 9.9e-21 74.2 0.4 1.9e-20 73.3 0.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|296242984|ref|YP_003650471.1| - 1.4e-13 50.3 0.3 6e-13 48.3 0.0 2.3 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|296242984|ref|YP_003650471.1| - 1.5e-10 40.9 0.0 2.3e-08 33.8 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|296242984|ref|YP_003650471.1| - 0.0087 15.7 0.0 0.04 13.6 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DUF2220 PF09983.4 gi|296242984|ref|YP_003650471.1| - 0.013 14.6 0.0 0.026 13.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria C-term(DUF2220) Dus PF01207.12 gi|296242984|ref|YP_003650471.1| - 0.16 10.8 0.1 0.33 9.7 0.1 1.5 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) CTP_transf_2 PF01467.21 gi|296242985|ref|YP_003650472.1| - 4.7e-11 42.9 0.0 5.9e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase RTC PF01137.16 gi|296242986|ref|YP_003650473.1| - 1.8e-78 262.4 0.0 2.2e-78 262.1 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|296242986|ref|YP_003650473.1| - 1.3e-20 73.2 0.0 2.2e-20 72.5 0.0 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain MMR_HSR1 PF01926.18 gi|296242987|ref|YP_003650474.1| - 5.4e-19 68.2 0.0 8.6e-19 67.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|296242987|ref|YP_003650474.1| - 6.7e-16 57.9 0.0 1.2e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|296242987|ref|YP_003650474.1| - 2.6e-11 43.0 0.0 3.6e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|296242987|ref|YP_003650474.1| - 3.2e-05 24.4 0.0 5.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein GTP_EFTU PF00009.22 gi|296242987|ref|YP_003650474.1| - 0.0017 17.8 0.0 1.8 7.9 0.0 2.7 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|296242987|ref|YP_003650474.1| - 0.0022 17.2 0.0 0.15 11.2 0.0 2.2 2 0 0 2 2 2 1 ADP-ribosylation factor family CbiA PF01656.18 gi|296242987|ref|YP_003650474.1| - 0.0032 16.9 0.0 0.005 16.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SRPRB PF09439.5 gi|296242987|ref|YP_003650474.1| - 0.0092 15.2 0.0 0.017 14.3 0.0 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit TPR_12 PF13424.1 gi|296242987|ref|YP_003650474.1| - 0.015 15.2 0.0 0.056 13.3 0.0 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat PduV-EutP PF10662.4 gi|296242987|ref|YP_003650474.1| - 0.016 14.7 0.0 0.16 11.4 0.0 2.4 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|296242987|ref|YP_003650474.1| - 0.038 13.4 0.0 4.9 6.5 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|296242987|ref|YP_003650474.1| - 0.04 12.6 0.0 0.092 11.5 0.0 1.6 1 0 0 1 1 1 0 ArgK protein Dynamin_N PF00350.18 gi|296242987|ref|YP_003650474.1| - 0.053 13.3 0.1 5.3 6.8 0.0 2.2 1 1 1 2 2 2 0 Dynamin family MobB PF03205.9 gi|296242987|ref|YP_003650474.1| - 0.076 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|296242987|ref|YP_003650474.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|296242987|ref|YP_003650474.1| - 0.12 12.1 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_17 PF13207.1 gi|296242987|ref|YP_003650474.1| - 0.14 13.0 0.0 0.34 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain TF_Zn_Ribbon PF08271.7 gi|296242988|ref|YP_003650475.1| - 2.6e-10 39.4 1.9 4.9e-10 38.5 1.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|296242988|ref|YP_003650475.1| - 0.00068 19.3 0.4 0.0011 18.6 0.3 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RRN7 PF11781.3 gi|296242988|ref|YP_003650475.1| - 0.00099 18.5 0.7 0.0022 17.4 0.5 1.7 1 0 0 1 1 1 1 RNA polymerase I-specific transcription initiation factor Rrn7 Lar_restr_allev PF14354.1 gi|296242988|ref|YP_003650475.1| - 0.011 15.9 0.3 0.025 14.8 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|296242988|ref|YP_003650475.1| - 0.012 14.8 1.2 0.022 13.9 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|296242988|ref|YP_003650475.1| - 0.015 15.0 0.1 0.038 13.7 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|296242988|ref|YP_003650475.1| - 0.11 12.2 0.3 0.17 11.6 0.2 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.14 gi|296242988|ref|YP_003650475.1| - 0.14 11.6 0.9 0.29 10.6 0.6 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|296242988|ref|YP_003650475.1| - 0.2 11.2 1.0 6 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|296242988|ref|YP_003650475.1| - 0.24 11.0 0.8 0.63 9.7 0.1 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Proteasome PF00227.21 gi|296242989|ref|YP_003650476.1| - 5.1e-53 179.1 0.0 5.8e-53 179.0 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Nitroreductase PF00881.19 gi|296242990|ref|YP_003650477.1| - 3.3e-27 95.3 0.0 3.8e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Nitroreductase family Rubrerythrin PF02915.12 gi|296242991|ref|YP_003650478.1| - 8.6e-30 103.8 2.9 1e-29 103.5 2.0 1.1 1 0 0 1 1 1 1 Rubrerythrin Rubredoxin PF00301.15 gi|296242991|ref|YP_003650478.1| - 0.0064 16.3 2.8 0.57 10.1 0.1 2.4 2 0 0 2 2 2 1 Rubredoxin Ferritin PF00210.19 gi|296242991|ref|YP_003650478.1| - 0.007 16.1 2.0 0.012 15.3 1.4 1.4 1 1 0 1 1 1 1 Ferritin-like domain CRISPR_Cas2 PF09827.4 gi|296242991|ref|YP_003650478.1| - 0.025 14.7 0.1 3.5 7.8 0.0 2.2 2 0 0 2 2 2 0 CRISPR associated protein Cas2 zf-Sec23_Sec24 PF04810.10 gi|296242991|ref|YP_003650478.1| - 0.028 13.9 0.5 0.12 11.9 0.0 2.0 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF3279 PF11682.3 gi|296242991|ref|YP_003650478.1| - 0.033 13.7 0.4 0.049 13.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) PhnA_Zn_Ribbon PF08274.7 gi|296242991|ref|YP_003650478.1| - 0.043 13.5 3.1 0.097 12.4 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|296242991|ref|YP_003650478.1| - 0.053 13.2 0.0 0.11 12.2 0.0 1.6 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Arc_PepC_II PF06847.6 gi|296242991|ref|YP_003650478.1| - 0.069 13.5 0.1 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 Archaeal Peptidase A24 C-terminus Type II Cys_rich_CPCC PF14206.1 gi|296242991|ref|YP_003650478.1| - 0.12 11.9 3.0 0.25 10.9 2.1 1.5 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-ISL3 PF14690.1 gi|296242991|ref|YP_003650478.1| - 0.13 12.3 6.3 3.4 7.7 0.4 3.0 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-UBP PF02148.14 gi|296242991|ref|YP_003650478.1| - 0.25 11.4 1.6 0.64 10.1 0.1 2.1 1 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_2 PF13240.1 gi|296242991|ref|YP_003650478.1| - 0.35 10.4 4.7 1.2 8.6 3.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-MIZ PF02891.15 gi|296242991|ref|YP_003650478.1| - 0.35 10.4 3.7 0.73 9.3 0.1 2.3 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger TF_Zn_Ribbon PF08271.7 gi|296242991|ref|YP_003650478.1| - 0.45 9.8 4.6 7.2 6.0 0.3 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Rad50_zn_hook PF04423.9 gi|296242991|ref|YP_003650478.1| - 0.51 9.8 5.8 4.9 6.6 1.3 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif DUF3039 PF11238.3 gi|296242991|ref|YP_003650478.1| - 0.69 9.3 3.6 1.5 8.3 2.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3039) DNA_ligase_ZBD PF03119.11 gi|296242991|ref|YP_003650478.1| - 0.96 9.2 11.0 2.3 8.0 1.2 2.4 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RanBP PF00641.13 gi|296242991|ref|YP_003650478.1| - 0.98 8.5 3.9 4.2 6.5 0.4 2.2 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others RRN7 PF11781.3 gi|296242991|ref|YP_003650478.1| - 1 8.9 4.1 2.2 7.8 0.2 2.3 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-ribbon_3 PF13248.1 gi|296242991|ref|YP_003650478.1| - 1 8.6 7.2 12 5.2 4.9 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|296242991|ref|YP_003650478.1| - 1.7 8.6 5.6 46 4.0 0.2 2.5 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|296242991|ref|YP_003650478.1| - 2.6 7.6 5.3 8.9 5.9 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.1 gi|296242991|ref|YP_003650478.1| - 3.3 8.0 7.7 2.3e+02 2.1 5.4 2.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-FPG_IleRS PF06827.9 gi|296242991|ref|YP_003650478.1| - 4.6 6.9 7.4 10 5.8 0.6 2.9 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS FdhE PF04216.7 gi|296242991|ref|YP_003650478.1| - 8.5 5.9 7.3 1.3 8.6 0.1 2.4 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Aldedh PF00171.17 gi|296242992|ref|YP_003650479.1| - 4.2e-115 384.7 0.0 4.8e-115 384.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|296242992|ref|YP_003650479.1| - 1e-07 31.0 0.0 1.6e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) zf-C2H2_jaz PF12171.3 gi|296242993|ref|YP_003650480.1| - 0.014 15.5 0.2 0.03 14.4 0.1 1.6 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding DUF4187 PF13821.1 gi|296242993|ref|YP_003650480.1| - 0.029 13.9 0.0 0.029 13.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4187) zf-C2H2_4 PF13894.1 gi|296242993|ref|YP_003650480.1| - 0.093 13.1 0.2 0.24 11.8 0.1 1.7 1 0 0 1 1 1 0 C2H2-type zinc finger POR_N PF01855.14 gi|296242994|ref|YP_003650481.1| - 5.2e-62 209.3 0.0 7.2e-62 208.8 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|296242994|ref|YP_003650481.1| - 1.1e-21 77.5 0.0 2e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|296242994|ref|YP_003650481.1| - 0.0012 18.3 0.3 0.0071 15.8 0.0 2.3 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|296242994|ref|YP_003650481.1| - 0.016 15.1 0.0 0.065 13.1 0.0 2.1 2 0 0 2 2 2 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|296242995|ref|YP_003650482.1| - 9.6e-28 96.6 0.1 1.4e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|296242995|ref|YP_003650482.1| - 2.3e-10 40.2 0.0 1.7e-09 37.4 0.0 2.1 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF1122 PF06557.6 gi|296242996|ref|YP_003650483.1| - 4.5e-50 169.1 0.3 5.9e-50 168.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) PIN PF01850.16 gi|296242998|ref|YP_003650485.1| - 2.4e-14 53.6 0.1 2.9e-14 53.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain PALP PF00291.20 gi|296243001|ref|YP_003650488.1| - 2.4e-60 204.3 0.0 2.9e-60 204.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-TFIIB PF13453.1 gi|296243001|ref|YP_003650488.1| - 0.59 9.3 2.2 7.2 5.9 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger DNA_ligase_ZBD PF03119.11 gi|296243001|ref|YP_003650488.1| - 0.71 9.6 5.6 1.4 8.7 1.1 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin PF00301.15 gi|296243001|ref|YP_003650488.1| - 1.2 9.1 4.4 2.4 8.1 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin IncA PF04156.9 gi|296243002|ref|YP_003650489.1| - 7e-15 55.1 47.6 2.8e-09 36.8 7.0 4.0 1 1 3 4 4 3 3 IncA protein SlyX PF04102.7 gi|296243002|ref|YP_003650489.1| - 5.7e-09 36.2 30.5 0.00013 22.2 2.8 4.2 1 1 3 4 4 4 4 SlyX DUF1664 PF07889.7 gi|296243002|ref|YP_003650489.1| - 6.6e-09 35.6 14.3 9e-06 25.5 1.0 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) DUF948 PF06103.6 gi|296243002|ref|YP_003650489.1| - 2.4e-08 33.7 13.4 0.00028 20.6 0.5 3.5 1 1 1 3 3 3 2 Bacterial protein of unknown function (DUF948) GAS PF13851.1 gi|296243002|ref|YP_003650489.1| - 5.7e-08 32.2 11.5 0.00027 20.2 1.3 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Laminin_II PF06009.7 gi|296243002|ref|YP_003650489.1| - 6.9e-08 32.3 18.3 6.8e-05 22.6 3.6 2.5 1 1 0 2 2 2 2 Laminin Domain II NPV_P10 PF05531.7 gi|296243002|ref|YP_003650489.1| - 6.9e-08 32.6 24.3 0.042 14.0 0.5 4.5 1 1 3 4 4 4 3 Nucleopolyhedrovirus P10 protein DUF4140 PF13600.1 gi|296243002|ref|YP_003650489.1| - 1.2e-07 32.1 15.3 0.014 15.8 0.4 5.9 4 1 2 6 6 6 1 N-terminal domain of unknown function (DUF4140) Tropomyosin_1 PF12718.2 gi|296243002|ref|YP_003650489.1| - 1.3e-07 31.5 13.0 0.0005 19.9 4.1 2.8 1 1 1 2 2 2 2 Tropomyosin like Spc7 PF08317.6 gi|296243002|ref|YP_003650489.1| - 2e-07 30.0 19.3 0.00015 20.5 6.6 2.8 2 1 1 3 3 3 2 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|296243002|ref|YP_003650489.1| - 2.7e-07 30.5 34.6 0.00044 20.0 14.2 3.0 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|296243002|ref|YP_003650489.1| - 3.1e-07 29.8 23.7 7e-05 22.1 10.1 2.2 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Tektin PF03148.9 gi|296243002|ref|YP_003650489.1| - 5e-07 28.5 13.3 0.0024 16.4 4.7 2.7 2 1 0 2 2 2 2 Tektin family CENP-F_leu_zip PF10473.4 gi|296243002|ref|YP_003650489.1| - 5.1e-07 29.6 20.2 0.00042 20.1 1.8 2.4 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2730 PF10805.3 gi|296243002|ref|YP_003650489.1| - 5.9e-07 29.1 14.0 0.011 15.3 2.6 4.3 2 1 3 5 5 4 2 Protein of unknown function (DUF2730) AAA_27 PF13514.1 gi|296243002|ref|YP_003650489.1| - 6.9e-07 27.3 9.6 9.6e-07 26.9 6.6 1.1 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|296243002|ref|YP_003650489.1| - 1.1e-06 27.4 12.1 1.9e-06 26.6 8.4 1.3 1 0 0 1 1 1 1 AAA domain MbeD_MobD PF04899.7 gi|296243002|ref|YP_003650489.1| - 1.9e-06 27.6 16.8 0.004 17.0 0.9 3.7 2 2 1 3 3 3 2 MbeD/MobD like Myosin_tail_1 PF01576.14 gi|296243002|ref|YP_003650489.1| - 1.9e-06 25.9 29.4 7.4e-05 20.6 9.7 1.9 1 1 1 2 2 2 2 Myosin tail MscS_porin PF12795.2 gi|296243002|ref|YP_003650489.1| - 3e-06 26.7 38.1 0.0017 17.7 4.6 2.7 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain PspA_IM30 PF04012.7 gi|296243002|ref|YP_003650489.1| - 4.8e-06 26.1 10.8 0.25 10.6 0.5 3.3 2 1 0 3 3 3 3 PspA/IM30 family FlaC_arch PF05377.6 gi|296243002|ref|YP_003650489.1| - 1.3e-05 25.0 18.6 0.002 18.0 1.0 4.8 1 1 4 6 6 6 2 Flagella accessory protein C (FlaC) Laminin_I PF06008.9 gi|296243002|ref|YP_003650489.1| - 1.6e-05 24.3 21.2 2.5e-05 23.7 14.7 1.2 1 0 0 1 1 1 1 Laminin Domain I ADIP PF11559.3 gi|296243002|ref|YP_003650489.1| - 3.8e-05 23.6 18.3 0.0071 16.2 1.4 3.1 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding Filament PF00038.16 gi|296243002|ref|YP_003650489.1| - 4.1e-05 23.2 16.5 0.00083 18.9 11.4 2.1 1 1 0 1 1 1 1 Intermediate filament protein Prefoldin_2 PF01920.15 gi|296243002|ref|YP_003650489.1| - 9.4e-05 22.1 16.0 0.3 10.8 0.3 4.4 1 1 1 4 4 4 1 Prefoldin subunit TMF_DNA_bd PF12329.3 gi|296243002|ref|YP_003650489.1| - 0.00011 21.8 23.5 0.0063 16.2 2.6 4.1 1 1 4 5 5 5 4 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.12 gi|296243002|ref|YP_003650489.1| - 0.00012 21.7 16.2 1.5 8.5 0.7 4.8 1 1 3 5 5 5 0 Prefoldin subunit Atg14 PF10186.4 gi|296243002|ref|YP_003650489.1| - 0.00013 21.0 14.9 0.032 13.1 5.3 2.4 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 ALIX_LYPXL_bnd PF13949.1 gi|296243002|ref|YP_003650489.1| - 0.00019 20.4 15.5 0.00019 20.4 10.7 1.9 1 1 1 2 2 2 1 ALIX V-shaped domain binding to HIV Mnd1 PF03962.10 gi|296243002|ref|YP_003650489.1| - 0.0002 21.0 8.5 0.083 12.5 0.7 3.1 1 1 1 3 3 3 2 Mnd1 family DUF3584 PF12128.3 gi|296243002|ref|YP_003650489.1| - 0.00022 18.7 10.6 0.00022 18.7 7.3 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF3584) DUF4618 PF15397.1 gi|296243002|ref|YP_003650489.1| - 0.0003 20.2 18.1 0.0048 16.2 3.9 2.7 1 1 0 2 2 2 1 Domain of unknown function (DUF4618) Tropomyosin PF00261.15 gi|296243002|ref|YP_003650489.1| - 0.00041 19.5 12.5 0.0062 15.6 8.7 2.4 1 1 0 1 1 1 1 Tropomyosin ATG16 PF08614.6 gi|296243002|ref|YP_003650489.1| - 0.00044 20.1 24.4 0.047 13.4 6.5 2.8 1 1 2 3 3 3 2 Autophagy protein 16 (ATG16) DUF342 PF03961.8 gi|296243002|ref|YP_003650489.1| - 0.00051 18.5 12.2 0.071 11.5 3.9 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF342) TBPIP PF07106.8 gi|296243002|ref|YP_003650489.1| - 0.00054 19.5 20.8 0.0066 16.0 1.4 3.3 1 1 2 3 3 3 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DivIC PF04977.10 gi|296243002|ref|YP_003650489.1| - 0.00055 19.3 19.8 0.35 10.3 0.9 4.5 1 1 2 4 4 4 2 Septum formation initiator DUF4200 PF13863.1 gi|296243002|ref|YP_003650489.1| - 0.00062 19.7 11.5 0.0033 17.3 0.1 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4200) Syntaxin PF00804.20 gi|296243002|ref|YP_003650489.1| - 0.00081 19.5 17.4 0.02 15.0 1.1 3.1 1 1 1 2 2 2 1 Syntaxin Snapin_Pallidin PF14712.1 gi|296243002|ref|YP_003650489.1| - 0.0011 19.2 22.3 0.11 12.8 1.7 4.0 1 1 3 4 4 4 1 Snapin/Pallidin EzrA PF06160.7 gi|296243002|ref|YP_003650489.1| - 0.0012 17.1 17.0 0.0048 15.1 5.8 2.1 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA DUF972 PF06156.8 gi|296243002|ref|YP_003650489.1| - 0.0013 19.0 19.3 0.26 11.6 0.7 3.8 1 1 3 4 4 4 2 Protein of unknown function (DUF972) Nup54 PF13874.1 gi|296243002|ref|YP_003650489.1| - 0.0014 18.2 15.6 0.039 13.6 0.3 2.9 1 1 2 3 3 3 2 Nucleoporin complex subunit 54 Fmp27_WPPW PF10359.4 gi|296243002|ref|YP_003650489.1| - 0.0018 16.7 14.6 0.032 12.6 0.5 3.0 1 1 2 3 3 3 1 RNA pol II promoter Fmp27 protein domain Mitofilin PF09731.4 gi|296243002|ref|YP_003650489.1| - 0.002 16.8 14.2 0.0028 16.3 9.8 1.1 1 0 0 1 1 1 1 Mitochondrial inner membrane protein Gp58 PF07902.6 gi|296243002|ref|YP_003650489.1| - 0.0021 16.3 8.8 0.0032 15.7 6.1 1.1 1 0 0 1 1 1 1 gp58-like protein DUF869 PF05911.6 gi|296243002|ref|YP_003650489.1| - 0.0028 15.9 16.7 0.72 8.0 3.9 1.8 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) Cob_adeno_trans PF01923.13 gi|296243002|ref|YP_003650489.1| - 0.0028 17.4 11.3 0.035 13.9 2.5 3.0 1 1 1 2 2 2 1 Cobalamin adenosyltransferase TPR_MLP1_2 PF07926.7 gi|296243002|ref|YP_003650489.1| - 0.0028 17.3 20.0 0.12 12.1 4.7 2.7 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein RmuC PF02646.11 gi|296243002|ref|YP_003650489.1| - 0.0028 16.5 12.9 0.25 10.1 1.1 3.2 1 1 2 3 3 3 1 RmuC family MAD PF05557.8 gi|296243002|ref|YP_003650489.1| - 0.0034 15.5 17.6 0.016 13.2 12.0 1.8 1 1 0 1 1 1 1 Mitotic checkpoint protein Apolipoprotein PF01442.13 gi|296243002|ref|YP_003650489.1| - 0.0038 16.7 15.4 0.02 14.3 10.7 2.0 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain BLOC1_2 PF10046.4 gi|296243002|ref|YP_003650489.1| - 0.0042 17.1 19.8 0.33 11.1 3.9 3.5 1 1 2 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 BicD PF09730.4 gi|296243002|ref|YP_003650489.1| - 0.0046 15.3 12.5 0.0073 14.7 8.6 1.2 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D TMF_TATA_bd PF12325.3 gi|296243002|ref|YP_003650489.1| - 0.0047 16.6 21.7 0.071 12.8 8.5 3.2 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Nsp1_C PF05064.8 gi|296243002|ref|YP_003650489.1| - 0.0055 16.3 23.0 0.027 14.0 3.3 3.2 1 1 1 3 3 3 1 Nsp1-like C-terminal region Seryl_tRNA_N PF02403.17 gi|296243002|ref|YP_003650489.1| - 0.0066 16.4 14.7 0.057 13.4 1.9 2.9 1 1 1 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Med9 PF07544.8 gi|296243002|ref|YP_003650489.1| - 0.0085 15.8 18.4 0.3 10.8 0.7 3.9 3 1 1 4 4 4 1 RNA polymerase II transcription mediator complex subunit 9 Fib_alpha PF08702.5 gi|296243002|ref|YP_003650489.1| - 0.011 15.9 18.1 0.14 12.2 4.4 2.8 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF812 PF05667.6 gi|296243002|ref|YP_003650489.1| - 0.012 14.2 15.1 0.03 12.8 9.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF4201 PF13870.1 gi|296243002|ref|YP_003650489.1| - 0.012 15.0 13.0 0.018 14.5 4.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) IFT57 PF10498.4 gi|296243002|ref|YP_003650489.1| - 0.012 14.3 18.4 0.026 13.2 4.7 2.1 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 APG6 PF04111.7 gi|296243002|ref|YP_003650489.1| - 0.017 14.2 16.2 0.019 14.0 4.3 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 FH2 PF02181.18 gi|296243002|ref|YP_003650489.1| - 0.017 14.0 6.4 0.32 9.8 1.1 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF2051 PF09738.4 gi|296243002|ref|YP_003650489.1| - 0.02 14.1 11.1 0.11 11.7 0.3 2.8 1 1 1 2 2 2 0 Double stranded RNA binding protein (DUF2051) TIG PF01833.19 gi|296243002|ref|YP_003650489.1| - 0.022 14.7 12.1 0.39 10.7 0.3 5.7 5 0 0 5 5 5 0 IPT/TIG domain WEMBL PF05701.6 gi|296243002|ref|YP_003650489.1| - 0.023 13.1 17.2 0.11 10.9 11.9 1.8 1 1 0 1 1 1 0 Weak chloroplast movement under blue light DUF4631 PF15450.1 gi|296243002|ref|YP_003650489.1| - 0.025 12.9 15.8 0.013 13.8 7.5 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4631) DUF904 PF06005.7 gi|296243002|ref|YP_003650489.1| - 0.026 14.7 23.5 0.082 13.2 2.1 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF904) WXG100 PF06013.7 gi|296243002|ref|YP_003650489.1| - 0.028 14.4 14.6 1.7 8.7 1.3 4.3 1 1 2 4 4 4 0 Proteins of 100 residues with WXG Cast PF10174.4 gi|296243002|ref|YP_003650489.1| - 0.029 12.4 16.8 0.38 8.7 11.5 1.9 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone COG2 PF06148.6 gi|296243002|ref|YP_003650489.1| - 0.04 13.7 19.2 5.7 6.8 0.6 3.5 1 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 MCPsignal PF00015.16 gi|296243002|ref|YP_003650489.1| - 0.042 13.3 8.5 0.034 13.6 1.1 2.2 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3374 PF11854.3 gi|296243002|ref|YP_003650489.1| - 0.049 11.8 1.0 0.42 8.8 0.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3374) DUF1128 PF06569.6 gi|296243002|ref|YP_003650489.1| - 0.054 13.2 4.9 0.81 9.4 0.3 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF1128) DASH_Hsk3 PF08227.6 gi|296243002|ref|YP_003650489.1| - 0.056 13.6 0.0 0.056 13.6 0.0 5.1 4 2 2 6 6 4 0 DASH complex subunit Hsk3 like Mod_r PF07200.8 gi|296243002|ref|YP_003650489.1| - 0.057 13.3 17.9 0.098 12.5 1.3 3.1 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF2968 PF11180.3 gi|296243002|ref|YP_003650489.1| - 0.057 12.7 15.8 0.52 9.6 5.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2968) Uds1 PF15456.1 gi|296243002|ref|YP_003650489.1| - 0.064 13.2 11.4 0.52 10.3 3.4 3.3 1 1 2 3 3 3 0 Up-regulated During Septation Prominin PF05478.6 gi|296243002|ref|YP_003650489.1| - 0.074 10.5 15.2 0.034 11.6 6.5 2.1 1 1 1 2 2 2 0 Prominin PilJ PF13675.1 gi|296243002|ref|YP_003650489.1| - 0.077 13.3 14.1 0.47 10.7 0.7 3.2 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term HrpB7 PF09486.5 gi|296243002|ref|YP_003650489.1| - 0.077 12.9 5.1 14 5.5 2.8 2.7 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) FliJ PF02050.11 gi|296243002|ref|YP_003650489.1| - 0.077 13.0 18.2 1.2 9.2 0.2 3.1 1 1 2 3 3 3 0 Flagellar FliJ protein XhlA PF10779.4 gi|296243002|ref|YP_003650489.1| - 0.087 12.7 14.9 1.5 8.7 0.1 3.8 2 2 1 3 3 3 0 Haemolysin XhlA CASP_C PF08172.7 gi|296243002|ref|YP_003650489.1| - 0.088 11.8 10.0 0.24 10.3 0.2 3.2 2 1 0 3 3 3 0 CASP C terminal Spc24 PF08286.6 gi|296243002|ref|YP_003650489.1| - 0.091 12.4 22.0 2.3 7.9 0.1 4.2 2 1 2 4 4 4 0 Spc24 subunit of Ndc80 YscO PF07321.7 gi|296243002|ref|YP_003650489.1| - 0.11 12.3 10.8 1.1 9.0 2.4 3.1 1 1 1 3 3 3 0 Type III secretion protein YscO DUF489 PF04356.7 gi|296243002|ref|YP_003650489.1| - 0.11 12.0 11.0 0.062 12.8 2.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) HSBP1 PF06825.7 gi|296243002|ref|YP_003650489.1| - 0.14 11.7 15.5 0.71 9.4 0.3 4.7 3 3 2 5 5 3 0 Heat shock factor binding protein 1 VP4_haemagglut PF00426.13 gi|296243002|ref|YP_003650489.1| - 0.15 9.9 6.5 0.29 9.0 4.5 1.3 1 0 0 1 1 1 0 Outer Capsid protein VP4 (Hemagglutinin) V_ATPase_I PF01496.14 gi|296243002|ref|YP_003650489.1| - 0.16 9.7 13.9 0.27 9.0 1.2 2.6 2 1 2 4 4 3 0 V-type ATPase 116kDa subunit family DUF1978 PF09321.5 gi|296243002|ref|YP_003650489.1| - 0.16 11.3 11.9 0.27 10.6 4.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF1978) DUF3407 PF11887.3 gi|296243002|ref|YP_003650489.1| - 0.17 11.1 12.8 0.086 12.1 5.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3407) ERM PF00769.14 gi|296243002|ref|YP_003650489.1| - 0.17 11.4 8.7 4.4 6.7 6.0 2.0 1 1 0 1 1 1 0 Ezrin/radixin/moesin family COG6 PF06419.6 gi|296243002|ref|YP_003650489.1| - 0.18 9.9 13.8 0.016 13.3 0.7 2.6 1 1 0 2 2 2 0 Conserved oligomeric complex COG6 APG17 PF04108.7 gi|296243002|ref|YP_003650489.1| - 0.18 10.5 16.3 0.33 9.7 11.3 1.4 1 0 0 1 1 1 0 Autophagy protein Apg17 DUF1515 PF07439.6 gi|296243002|ref|YP_003650489.1| - 0.18 11.5 4.1 2.9 7.7 0.1 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) MT PF12777.2 gi|296243002|ref|YP_003650489.1| - 0.2 10.3 3.4 1.5 7.4 0.3 2.2 1 1 1 2 2 2 0 Microtubule-binding stalk of dynein motor Med4 PF10018.4 gi|296243002|ref|YP_003650489.1| - 0.21 10.9 24.3 1 8.7 4.1 3.5 2 1 1 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 COG5 PF10392.4 gi|296243002|ref|YP_003650489.1| - 0.23 11.4 20.0 1.2 9.0 4.6 3.2 1 1 2 3 3 3 0 Golgi transport complex subunit 5 CALCOCO1 PF07888.6 gi|296243002|ref|YP_003650489.1| - 0.24 9.6 20.5 0.035 12.4 4.3 2.1 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like HsbA PF12296.3 gi|296243002|ref|YP_003650489.1| - 0.24 11.2 7.0 0.66 9.8 0.3 3.3 1 1 2 3 3 3 0 Hydrophobic surface binding protein A Syntaxin-6_N PF09177.6 gi|296243002|ref|YP_003650489.1| - 0.28 11.6 19.9 66 4.0 7.8 4.1 1 1 2 3 3 2 0 Syntaxin 6, N-terminal TACC PF05010.9 gi|296243002|ref|YP_003650489.1| - 0.28 10.9 4.7 2.5 7.7 0.5 2.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC) TMCO5 PF14992.1 gi|296243002|ref|YP_003650489.1| - 0.29 10.2 14.8 0.13 11.3 8.3 1.8 1 1 0 1 1 1 0 TMCO5 family Sipho_Gp157 PF05565.6 gi|296243002|ref|YP_003650489.1| - 0.34 10.4 6.8 0.29 10.7 0.7 2.5 1 1 2 3 3 3 0 Siphovirus Gp157 STAT_alpha PF01017.15 gi|296243002|ref|YP_003650489.1| - 0.34 10.6 17.4 54 3.4 9.9 3.1 1 1 1 2 2 2 0 STAT protein, all-alpha domain DUF2937 PF11157.3 gi|296243002|ref|YP_003650489.1| - 0.34 10.2 4.7 4.7 6.5 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) DUF16 PF01519.11 gi|296243002|ref|YP_003650489.1| - 0.34 11.1 13.3 12 6.2 0.2 3.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 Lebercilin PF15619.1 gi|296243002|ref|YP_003650489.1| - 0.35 10.2 16.3 1.1 8.6 11.3 1.9 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Transposase_22 PF02994.9 gi|296243002|ref|YP_003650489.1| - 0.35 9.2 9.4 1.9 6.9 1.7 2.5 1 1 1 2 2 2 0 L1 transposable element FimP PF09766.4 gi|296243002|ref|YP_003650489.1| - 0.38 9.7 11.2 0.3 10.1 4.4 2.0 1 1 1 2 2 2 0 Fms-interacting protein DUF3166 PF11365.3 gi|296243002|ref|YP_003650489.1| - 0.5 10.8 8.6 11 6.5 0.2 3.7 1 1 0 2 2 2 0 Protein of unknown function (DUF3166) DUF3422 PF11902.3 gi|296243002|ref|YP_003650489.1| - 0.5 9.1 12.1 1.9 7.2 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3422) Rootletin PF15035.1 gi|296243002|ref|YP_003650489.1| - 0.53 10.2 20.3 2.1 8.3 12.8 2.6 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Filo_VP35 PF02097.10 gi|296243002|ref|YP_003650489.1| - 0.56 9.3 5.0 0.18 10.9 0.7 1.9 1 1 1 2 2 2 0 Filoviridae VP35 Hemagglutinin PF00509.13 gi|296243002|ref|YP_003650489.1| - 0.59 8.2 11.2 0.15 10.1 0.7 2.9 1 1 1 3 3 3 0 Haemagglutinin DivIVA PF05103.8 gi|296243002|ref|YP_003650489.1| - 0.61 10.1 14.5 16 5.5 0.3 3.8 1 1 3 4 4 4 0 DivIVA protein Troponin PF00992.15 gi|296243002|ref|YP_003650489.1| - 0.63 10.1 2.0 0.93 9.5 0.0 2.0 2 0 0 2 2 1 0 Troponin DUF724 PF05266.9 gi|296243002|ref|YP_003650489.1| - 0.65 9.5 8.7 7 6.2 3.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Striatin PF08232.7 gi|296243002|ref|YP_003650489.1| - 0.66 10.2 11.3 0.73 10.1 0.2 3.4 1 1 1 2 2 1 0 Striatin family FemAB PF02388.11 gi|296243002|ref|YP_003650489.1| - 0.68 8.5 2.8 12 4.4 0.2 2.3 1 1 1 2 2 2 0 FemAB family FliD_C PF07195.7 gi|296243002|ref|YP_003650489.1| - 0.76 9.0 14.8 2.7 7.2 3.0 3.3 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus ORF6C PF10552.4 gi|296243002|ref|YP_003650489.1| - 0.81 9.4 9.1 23 4.7 0.2 3.6 2 2 1 3 3 3 0 ORF6C domain DUF2935 PF11155.3 gi|296243002|ref|YP_003650489.1| - 0.81 9.7 5.6 32 4.6 3.9 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) DUF1759 PF03564.10 gi|296243002|ref|YP_003650489.1| - 0.84 9.4 8.1 1.4 8.6 1.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) DUF1202 PF06717.6 gi|296243002|ref|YP_003650489.1| - 0.86 8.8 1.3 23 4.1 0.0 2.6 1 1 0 3 3 2 0 Protein of unknown function (DUF1202) Vps5 PF09325.5 gi|296243002|ref|YP_003650489.1| - 0.91 8.7 16.9 0.37 10.0 1.5 2.9 1 1 2 3 3 3 0 Vps5 C terminal like LOH1CR12 PF10158.4 gi|296243002|ref|YP_003650489.1| - 1 9.1 7.8 6.5 6.5 0.8 2.6 1 1 1 2 2 2 0 Tumour suppressor protein DASH_Dam1 PF08653.5 gi|296243002|ref|YP_003650489.1| - 1.3 8.8 16.6 2.4 7.9 0.5 5.0 2 1 3 6 6 6 0 DASH complex subunit Dam1 EMP24_GP25L PF01105.19 gi|296243002|ref|YP_003650489.1| - 1.3 8.7 11.8 17 5.0 0.5 4.2 1 1 3 4 4 4 0 emp24/gp25L/p24 family/GOLD Fez1 PF06818.10 gi|296243002|ref|YP_003650489.1| - 1.4 8.9 15.0 0.16 11.9 7.1 1.7 1 1 0 1 1 1 0 Fez1 Cortex-I_coil PF09304.5 gi|296243002|ref|YP_003650489.1| - 1.4 9.0 21.3 1.3 9.0 5.5 2.9 1 1 2 3 3 3 0 Cortexillin I, coiled coil NTR2 PF15458.1 gi|296243002|ref|YP_003650489.1| - 1.4 8.1 15.3 1.4 8.0 0.3 3.3 2 1 1 3 3 3 0 Nineteen complex-related protein 2 V-ATPase_C PF03223.10 gi|296243002|ref|YP_003650489.1| - 1.5 7.6 7.0 20 3.9 4.8 2.0 1 1 0 1 1 1 0 V-ATPase subunit C HOOK PF05622.7 gi|296243002|ref|YP_003650489.1| - 1.7 6.3 21.0 3.1 5.5 0.4 2.3 1 1 1 2 2 2 0 HOOK protein DUF641 PF04859.7 gi|296243002|ref|YP_003650489.1| - 1.8 8.3 8.5 1.3 8.8 0.5 3.0 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) Sas10_Utp3 PF04000.10 gi|296243002|ref|YP_003650489.1| - 1.8 8.8 20.1 7.6 6.8 2.7 4.7 2 2 1 3 3 3 0 Sas10/Utp3/C1D family Phage_GP20 PF06810.6 gi|296243002|ref|YP_003650489.1| - 1.9 7.9 13.2 1.2 8.5 0.6 3.2 1 1 2 3 3 3 0 Phage minor structural protein GP20 bZIP_1 PF00170.16 gi|296243002|ref|YP_003650489.1| - 2 8.4 19.9 14 5.7 0.6 4.6 1 1 4 6 6 6 0 bZIP transcription factor DegS PF05384.6 gi|296243002|ref|YP_003650489.1| - 2 7.6 15.2 1.2 8.3 0.2 3.6 1 1 1 3 3 3 0 Sensor protein DegS CK2S PF15011.1 gi|296243002|ref|YP_003650489.1| - 2.3 7.9 13.7 2.5 7.8 1.1 2.4 1 1 1 2 2 2 0 Casein Kinase 2 substrate DUF3086 PF11285.3 gi|296243002|ref|YP_003650489.1| - 2.5 6.8 12.0 2.6 6.7 4.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) Bacillus_HBL PF05791.6 gi|296243002|ref|YP_003650489.1| - 2.5 7.4 19.6 0.16 11.3 1.0 3.1 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) LPP PF04728.8 gi|296243002|ref|YP_003650489.1| - 2.6 7.8 12.4 0.99 9.2 0.4 3.2 3 1 1 4 4 2 0 Lipoprotein leucine-zipper Cluap1 PF10234.4 gi|296243002|ref|YP_003650489.1| - 2.7 7.0 14.6 1.5 7.9 2.5 2.2 1 1 1 2 2 2 0 Clusterin-associated protein-1 LXG PF04740.7 gi|296243002|ref|YP_003650489.1| - 2.8 7.6 15.3 1.2e+02 2.3 10.5 2.4 1 1 0 1 1 1 0 LXG domain of WXG superfamily YjcZ PF13990.1 gi|296243002|ref|YP_003650489.1| - 3 6.9 11.8 0.95 8.5 0.3 2.6 1 1 1 2 2 2 0 YjcZ-like protein Orbi_VP5 PF00901.12 gi|296243002|ref|YP_003650489.1| - 3.2 5.8 6.9 0.91 7.6 2.6 1.5 1 1 1 2 2 1 0 Orbivirus outer capsid protein VP5 Phasin PF05597.6 gi|296243002|ref|YP_003650489.1| - 3.4 7.4 12.8 9.2 6.0 1.8 3.3 2 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) TMPIT PF07851.8 gi|296243002|ref|YP_003650489.1| - 3.5 6.6 8.0 0.92 8.5 0.7 2.2 1 1 1 2 2 2 0 TMPIT-like protein Fzo_mitofusin PF04799.8 gi|296243002|ref|YP_003650489.1| - 3.8 6.8 17.7 1.4 8.2 1.8 3.5 1 1 2 3 3 3 0 fzo-like conserved region DUF4164 PF13747.1 gi|296243002|ref|YP_003650489.1| - 3.9 7.6 21.7 0.87 9.7 4.5 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) Vps51 PF08700.6 gi|296243002|ref|YP_003650489.1| - 4 7.3 14.8 66 3.4 0.1 4.7 1 1 3 4 4 4 0 Vps51/Vps67 Spectrin PF00435.16 gi|296243002|ref|YP_003650489.1| - 4.1 7.7 14.0 3.1 8.1 1.0 2.6 1 1 1 2 2 2 0 Spectrin repeat CENP-Q PF13094.1 gi|296243002|ref|YP_003650489.1| - 4.2 7.3 20.1 1.6 8.7 4.2 2.3 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit FlxA PF14282.1 gi|296243002|ref|YP_003650489.1| - 4.2 7.3 28.7 0.69 9.8 1.5 3.6 1 1 1 2 2 1 0 FlxA-like protein PTRF_SDPR PF15237.1 gi|296243002|ref|YP_003650489.1| - 4.6 6.5 7.4 0.62 9.4 0.3 2.2 2 0 0 2 2 2 0 PTRF/SDPR family Tup_N PF08581.5 gi|296243002|ref|YP_003650489.1| - 5.2 7.3 10.2 8.5 6.6 1.4 3.2 1 1 2 3 3 3 0 Tup N-terminal Phage_GPO PF05929.6 gi|296243002|ref|YP_003650489.1| - 5.4 6.1 9.9 5.9 6.0 1.8 2.7 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase CDC37_N PF03234.9 gi|296243002|ref|YP_003650489.1| - 5.9 7.1 5.7 20 5.4 4.0 1.9 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding Vip3A_N PF12495.3 gi|296243002|ref|YP_003650489.1| - 6 6.5 19.7 1.7 8.2 6.6 2.4 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal HlyD PF00529.15 gi|296243002|ref|YP_003650489.1| - 6 6.0 22.1 4.1 6.6 5.7 2.2 1 1 1 2 2 2 0 HlyD family secretion protein Matrilin_ccoil PF10393.4 gi|296243002|ref|YP_003650489.1| - 6 6.3 8.2 15 5.0 0.1 4.0 3 1 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin V-SNARE PF05008.10 gi|296243002|ref|YP_003650489.1| - 6.4 7.0 19.8 0.41 10.8 1.9 3.3 1 1 2 3 3 3 0 Vesicle transport v-SNARE protein N-terminus HAUS-augmin3 PF14932.1 gi|296243002|ref|YP_003650489.1| - 7.4 5.6 25.5 5.2 6.1 5.2 2.9 2 1 1 3 3 2 0 HAUS augmin-like complex subunit 3 DUF2203 PF09969.4 gi|296243002|ref|YP_003650489.1| - 7.5 6.8 5.2 7.5 6.8 0.6 2.5 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) MerR-DNA-bind PF09278.6 gi|296243002|ref|YP_003650489.1| - 7.8 6.9 19.4 7.2 7.0 3.7 4.0 2 2 1 3 3 3 0 MerR, DNA binding DUF1301 PF06979.7 gi|296243003|ref|YP_003650490.1| - 0.14 12.3 4.1 1.3 9.1 0.0 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF1301) Trm56 PF01994.11 gi|296243005|ref|YP_003650492.1| - 2.1e-46 156.6 0.0 2.8e-46 156.2 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 MMR_HSR1 PF01926.18 gi|296243006|ref|YP_003650493.1| - 1.1e-19 70.5 0.1 2.7e-19 69.2 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|296243006|ref|YP_003650493.1| - 8e-11 41.4 0.5 1.6e-10 40.4 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|296243006|ref|YP_003650493.1| - 1.3e-08 34.5 0.2 1.5e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|296243006|ref|YP_003650493.1| - 1.8e-05 24.0 0.0 6.3e-05 22.2 0.0 1.8 1 1 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|296243006|ref|YP_003650493.1| - 9.2e-05 21.9 0.3 0.0013 18.2 0.2 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|296243006|ref|YP_003650493.1| - 0.00037 20.4 0.0 0.0013 18.7 0.0 1.9 2 1 0 3 3 3 1 AAA domain GTP-bdg_N PF13167.1 gi|296243006|ref|YP_003650493.1| - 0.00055 19.9 0.4 0.0012 18.8 0.2 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal SRPRB PF09439.5 gi|296243006|ref|YP_003650493.1| - 0.0017 17.6 0.0 0.005 16.0 0.0 1.8 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit cobW PF02492.14 gi|296243006|ref|YP_003650493.1| - 0.0034 16.8 0.4 1.7 8.0 0.0 2.7 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|296243006|ref|YP_003650493.1| - 0.0044 17.5 0.0 0.0086 16.5 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein ABC_tran PF00005.22 gi|296243006|ref|YP_003650493.1| - 0.048 13.9 0.0 0.12 12.6 0.0 1.8 1 1 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|296243006|ref|YP_003650493.1| - 0.097 12.1 0.1 2.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|296243006|ref|YP_003650493.1| - 0.52 11.1 4.6 1.1 10.0 0.1 2.9 2 2 0 2 2 2 0 AAA domain HTH_3 PF01381.17 gi|296243007|ref|YP_003650494.1| - 1.4e-10 40.8 1.2 2.1e-10 40.2 0.8 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|296243007|ref|YP_003650494.1| - 1.6e-09 37.6 0.2 2.4e-09 37.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|296243007|ref|YP_003650494.1| - 1.8e-09 37.6 0.1 2.7e-09 37.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|296243007|ref|YP_003650494.1| - 3.2e-05 23.4 0.3 5.8e-05 22.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|296243007|ref|YP_003650494.1| - 0.019 14.7 0.1 0.032 14.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1178 PF06676.6 gi|296243007|ref|YP_003650494.1| - 0.048 13.8 0.1 0.067 13.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1178) DUF2072 PF09845.4 gi|296243007|ref|YP_003650494.1| - 0.095 12.6 0.6 0.16 11.8 0.4 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) BMFP PF04380.8 gi|296243007|ref|YP_003650494.1| - 0.18 11.9 0.8 0.32 11.1 0.5 1.5 1 0 0 1 1 1 0 Membrane fusogenic activity Sgf11 PF08209.6 gi|296243007|ref|YP_003650494.1| - 0.4 10.0 5.0 0.67 9.3 1.4 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-DNL PF05180.7 gi|296243007|ref|YP_003650494.1| - 0.77 9.5 3.2 0.87 9.3 1.4 1.8 2 0 0 2 2 2 0 DNL zinc finger AAA PF00004.24 gi|296243008|ref|YP_003650495.1| - 3.3e-43 147.0 0.1 8.7e-43 145.6 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|296243008|ref|YP_003650495.1| - 6.3e-08 32.7 0.0 2.5e-07 30.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|296243008|ref|YP_003650495.1| - 5e-07 30.5 0.3 7.1e-05 23.6 0.0 2.8 3 0 0 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|296243008|ref|YP_003650495.1| - 2.9e-06 26.5 0.0 6.8e-06 25.2 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|296243008|ref|YP_003650495.1| - 3e-06 27.3 0.1 0.00043 20.3 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|296243008|ref|YP_003650495.1| - 5.2e-06 26.2 0.1 2.2e-05 24.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|296243008|ref|YP_003650495.1| - 9.6e-06 25.7 0.3 0.0018 18.4 0.0 2.5 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|296243008|ref|YP_003650495.1| - 5.2e-05 22.4 0.2 0.00043 19.4 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.1 gi|296243008|ref|YP_003650495.1| - 0.0002 21.2 0.1 0.00084 19.2 0.0 2.1 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.12 gi|296243008|ref|YP_003650495.1| - 0.0005 19.5 0.2 0.0021 17.5 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF815 PF05673.8 gi|296243008|ref|YP_003650495.1| - 0.00051 19.0 0.0 0.0031 16.4 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|296243008|ref|YP_003650495.1| - 0.00064 18.5 0.0 0.0014 17.4 0.0 1.6 1 0 0 1 1 1 1 TIP49 C-terminus Mg_chelatase PF01078.16 gi|296243008|ref|YP_003650495.1| - 0.00066 18.9 0.1 0.0021 17.2 0.0 1.8 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|296243008|ref|YP_003650495.1| - 0.00088 18.9 0.3 0.0095 15.5 0.1 2.2 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.1 gi|296243008|ref|YP_003650495.1| - 0.0017 18.3 0.0 0.0049 16.8 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|296243008|ref|YP_003650495.1| - 0.0017 18.2 0.0 0.0047 16.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|296243008|ref|YP_003650495.1| - 0.003 17.7 0.0 0.014 15.5 0.0 2.0 2 0 0 2 2 2 1 RNA helicase Med4 PF10018.4 gi|296243008|ref|YP_003650495.1| - 0.0031 16.9 0.1 0.0059 16.0 0.0 1.6 1 0 0 1 1 1 1 Vitamin-D-receptor interacting Mediator subunit 4 AAA_25 PF13481.1 gi|296243008|ref|YP_003650495.1| - 0.0033 16.8 1.2 0.072 12.4 0.1 2.5 1 1 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|296243008|ref|YP_003650495.1| - 0.011 15.4 2.1 0.033 13.8 0.0 2.7 3 1 0 3 3 3 0 Archaeal ATPase AAA_19 PF13245.1 gi|296243008|ref|YP_003650495.1| - 0.011 15.4 0.1 0.031 14.0 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|296243008|ref|YP_003650495.1| - 0.011 15.9 0.2 0.055 13.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|296243008|ref|YP_003650495.1| - 0.016 14.7 0.2 0.037 13.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|296243008|ref|YP_003650495.1| - 0.044 14.0 0.0 0.14 12.4 0.0 2.0 2 0 0 2 2 1 0 ABC transporter Sigma54_activ_2 PF14532.1 gi|296243008|ref|YP_003650495.1| - 0.052 13.5 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|296243008|ref|YP_003650495.1| - 0.058 12.2 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain V-SNARE PF05008.10 gi|296243008|ref|YP_003650495.1| - 0.065 13.4 1.0 0.22 11.7 0.7 1.8 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus AAA_23 PF13476.1 gi|296243008|ref|YP_003650495.1| - 0.29 11.4 2.3 1.5 9.1 0.0 2.6 3 1 0 3 3 2 0 AAA domain bZIP_1 PF00170.16 gi|296243008|ref|YP_003650495.1| - 0.96 9.4 5.9 0.64 10.0 2.3 2.1 2 0 0 2 2 1 0 bZIP transcription factor TGT_C2 PF14810.1 gi|296243009|ref|YP_003650496.1| - 1.7e-21 75.8 0.0 4e-21 74.6 0.0 1.6 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|296243009|ref|YP_003650496.1| - 3e-12 46.0 0.0 5.5e-12 45.2 0.0 1.5 2 0 0 2 2 2 1 PUA domain PAC2 PF09754.4 gi|296243010|ref|YP_003650497.1| - 7e-34 117.5 0.1 7.9e-34 117.4 0.1 1.0 1 0 0 1 1 1 1 PAC2 family TGT PF01702.13 gi|296243011|ref|YP_003650498.1| - 7e-48 162.9 0.0 1.3e-47 162.0 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase CHAT PF12770.2 gi|296243011|ref|YP_003650498.1| - 0.015 14.4 0.0 0.027 13.5 0.0 1.6 2 0 0 2 2 2 0 CHAT domain TGT_C1 PF14809.1 gi|296243011|ref|YP_003650498.1| - 0.13 12.0 0.1 0.4 10.5 0.1 1.8 1 0 0 1 1 1 0 C1 domain of tRNA-guanine transglycosylase dimerisation Lsm_C PF14894.1 gi|296243012|ref|YP_003650499.1| - 2.6e-27 94.0 1.3 3.8e-27 93.5 0.3 1.7 2 0 0 2 2 2 1 Lsm C-terminal LSM PF01423.17 gi|296243012|ref|YP_003650499.1| - 1.3e-09 37.4 0.2 2e-09 36.8 0.1 1.3 1 0 0 1 1 1 1 LSM domain Gemin6 PF06372.7 gi|296243012|ref|YP_003650499.1| - 0.00074 18.8 0.0 0.0014 17.9 0.0 1.5 1 1 0 1 1 1 1 Gemin6 protein SM-ATX PF14438.1 gi|296243012|ref|YP_003650499.1| - 0.075 12.9 0.0 0.12 12.3 0.0 1.4 1 1 0 1 1 1 0 Ataxin 2 SM domain DUF1251 PF06856.6 gi|296243013|ref|YP_003650500.1| - 0.11 12.0 0.1 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1251) DUF87 PF01935.12 gi|296243015|ref|YP_003650502.1| - 4.5e-22 78.9 0.0 6.1e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|296243015|ref|YP_003650502.1| - 1.1e-19 70.9 0.0 1.3e-17 64.2 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|296243015|ref|YP_003650502.1| - 2.2e-12 46.1 0.0 7.4e-10 37.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|296243015|ref|YP_003650502.1| - 5.1e-07 28.6 0.0 9.6e-07 27.7 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|296243015|ref|YP_003650502.1| - 0.00016 22.4 0.0 0.00039 21.2 0.0 1.7 2 0 0 2 2 2 1 AAA domain IPT PF01745.11 gi|296243015|ref|YP_003650502.1| - 0.00037 19.7 0.0 0.00069 18.8 0.0 1.4 1 0 0 1 1 1 1 Isopentenyl transferase ResIII PF04851.10 gi|296243015|ref|YP_003650502.1| - 0.0023 17.7 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|296243015|ref|YP_003650502.1| - 0.0039 17.3 0.1 0.32 11.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|296243015|ref|YP_003650502.1| - 0.0069 15.8 0.0 0.016 14.6 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|296243015|ref|YP_003650502.1| - 0.0079 15.6 0.0 0.014 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Zot PF05707.7 gi|296243015|ref|YP_003650502.1| - 0.0098 15.3 0.1 0.3 10.5 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) Sigma54_activat PF00158.21 gi|296243015|ref|YP_003650502.1| - 0.028 13.8 0.0 0.067 12.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA PF00004.24 gi|296243015|ref|YP_003650502.1| - 0.061 13.5 0.0 0.64 10.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|296243015|ref|YP_003650502.1| - 0.12 11.5 0.0 0.46 9.6 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein AAA_18 PF13238.1 gi|296243015|ref|YP_003650502.1| - 0.14 12.4 0.0 0.68 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|296243015|ref|YP_003650502.1| - 0.14 12.0 0.0 0.68 9.8 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain TraG-D_C PF12696.2 gi|296243015|ref|YP_003650502.1| - 0.18 11.6 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG Cpn60_TCP1 PF00118.19 gi|296243016|ref|YP_003650503.1| - 6.1e-168 559.4 9.8 7e-168 559.2 6.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family N6_N4_Mtase PF01555.13 gi|296243018|ref|YP_003650505.1| - 2.6e-26 92.5 0.0 2e-15 56.9 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|296243018|ref|YP_003650505.1| - 6.4e-15 55.2 0.0 8.9e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|296243018|ref|YP_003650505.1| - 2.7e-10 40.1 0.0 6.2e-10 38.9 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|296243018|ref|YP_003650505.1| - 0.00097 19.5 0.0 1.9 9.0 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|296243018|ref|YP_003650505.1| - 0.011 15.1 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|296243018|ref|YP_003650505.1| - 0.033 13.7 0.0 0.16 11.5 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|296243018|ref|YP_003650505.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.4 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TFIIE_alpha PF02002.12 gi|296243019|ref|YP_003650506.1| - 1.7e-08 33.9 1.2 1.7e-08 33.9 0.9 1.9 2 0 0 2 2 2 1 TFIIE alpha subunit MerR-DNA-bind PF09278.6 gi|296243019|ref|YP_003650506.1| - 0.016 15.5 0.2 0.016 15.5 0.1 1.7 2 0 0 2 2 2 0 MerR, DNA binding HypA PF01155.14 gi|296243019|ref|YP_003650506.1| - 0.064 12.9 0.0 0.086 12.5 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2H2_6 PF13912.1 gi|296243019|ref|YP_003650506.1| - 0.071 13.0 0.1 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger Osmo_CC PF08946.5 gi|296243019|ref|YP_003650506.1| - 0.11 12.5 1.7 0.37 10.8 1.1 1.9 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Rad50_zn_hook PF04423.9 gi|296243019|ref|YP_003650506.1| - 7.7 6.0 8.5 18 4.8 1.6 2.8 2 1 0 2 2 2 0 Rad50 zinc hook motif DNA_methylase PF00145.12 gi|296243020|ref|YP_003650507.1| - 4.1e-49 167.5 0.0 5.1e-32 111.3 0.0 2.0 1 1 1 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|296243020|ref|YP_003650507.1| - 0.033 13.7 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF2122 PF09895.4 gi|296243021|ref|YP_003650508.1| - 8e-22 77.4 0.1 1.1e-21 77.0 0.1 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Aldo_ket_red PF00248.16 gi|296243022|ref|YP_003650509.1| - 8.5e-72 241.3 0.0 1.1e-71 241.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family PP-binding PF00550.20 gi|296243022|ref|YP_003650509.1| - 0.052 13.8 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 Phosphopantetheine attachment site RHS PF03527.9 gi|296243022|ref|YP_003650509.1| - 0.093 12.5 0.3 0.2 11.4 0.2 1.5 1 0 0 1 1 1 0 RHS protein Pyr_redox_2 PF07992.9 gi|296243023|ref|YP_003650510.1| - 2.4e-31 109.1 0.0 5.4e-31 108.0 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|296243023|ref|YP_003650510.1| - 1.6e-15 57.2 2.7 1e-11 45.0 0.2 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|296243023|ref|YP_003650510.1| - 2.7e-15 57.0 0.4 1.5e-12 48.0 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|296243023|ref|YP_003650510.1| - 9.3e-11 41.2 4.3 3.8e-05 22.7 0.2 3.4 2 1 2 4 4 4 3 FAD binding domain FAD_oxidored PF12831.2 gi|296243023|ref|YP_003650510.1| - 1.2e-10 41.0 3.9 1.9e-07 30.5 0.0 3.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|296243023|ref|YP_003650510.1| - 7.5e-09 34.9 6.0 9.2e-06 24.7 0.1 3.4 4 0 0 4 4 4 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|296243023|ref|YP_003650510.1| - 8.2e-09 34.4 0.5 0.0011 17.5 0.0 3.2 3 0 0 3 3 3 3 HI0933-like protein NAD_binding_8 PF13450.1 gi|296243023|ref|YP_003650510.1| - 5.9e-07 29.4 1.5 0.00087 19.2 0.2 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|296243023|ref|YP_003650510.1| - 1.3e-06 27.5 3.1 0.0011 17.9 0.4 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|296243023|ref|YP_003650510.1| - 1.5e-06 27.5 1.0 0.017 14.2 0.1 2.4 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.14 gi|296243023|ref|YP_003650510.1| - 1.1e-05 24.6 2.3 0.0011 18.0 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain Trp_halogenase PF04820.9 gi|296243023|ref|YP_003650510.1| - 0.00072 18.2 1.6 0.24 9.9 0.1 2.3 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|296243023|ref|YP_003650510.1| - 0.00083 19.5 0.5 0.14 12.4 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|296243023|ref|YP_003650510.1| - 0.0028 17.4 0.5 0.018 14.7 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.1 gi|296243023|ref|YP_003650510.1| - 0.012 15.4 0.5 12 5.6 0.0 3.1 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|296243023|ref|YP_003650510.1| - 0.015 14.2 0.5 2.1 7.2 0.1 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.1 gi|296243023|ref|YP_003650510.1| - 0.058 12.3 0.0 0.35 9.7 0.0 2.1 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|296243023|ref|YP_003650510.1| - 0.059 12.9 0.4 5.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase PF05221.12 gi|296243024|ref|YP_003650511.1| - 7.8e-66 221.7 0.0 8.7e-66 221.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|296243024|ref|YP_003650511.1| - 4.5e-55 185.9 0.1 7.2e-55 185.2 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|296243024|ref|YP_003650511.1| - 2.8e-07 29.8 0.2 5.3e-07 28.9 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|296243024|ref|YP_003650511.1| - 3.9e-06 26.3 0.1 8.1e-06 25.3 0.1 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|296243024|ref|YP_003650511.1| - 0.029 14.3 0.5 0.11 12.4 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain zf-RNPHF PF08080.7 gi|296243024|ref|YP_003650511.1| - 0.17 11.4 0.3 0.32 10.5 0.2 1.4 1 0 0 1 1 1 0 RNPHF zinc finger DNA_pol_B PF00136.16 gi|296243026|ref|YP_003650513.1| - 6.3e-96 321.9 0.0 1.1e-95 321.1 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|296243026|ref|YP_003650513.1| - 1.7e-43 148.7 0.3 1.9e-41 141.9 0.2 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|296243026|ref|YP_003650513.1| - 9.6e-13 48.2 0.0 2.4e-12 46.9 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|296243026|ref|YP_003650513.1| - 0.029 13.9 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF1664 PF07889.7 gi|296243026|ref|YP_003650513.1| - 0.3 10.8 2.0 1.4 8.6 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) eRF1_1 PF03463.10 gi|296243027|ref|YP_003650514.1| - 2.7e-31 107.8 0.0 1e-30 106.0 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 1 eRF1_2 PF03464.10 gi|296243027|ref|YP_003650514.1| - 3.9e-19 69.3 0.0 1.2e-18 67.6 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|296243027|ref|YP_003650514.1| - 4.5e-13 49.4 0.0 1e-12 48.2 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 3 BsuBI_PstI_RE PF06616.6 gi|296243027|ref|YP_003650514.1| - 0.045 12.5 0.0 0.066 12.0 0.0 1.2 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease C-terminus NTP_transf_2 PF01909.18 gi|296243028|ref|YP_003650515.1| - 2.2e-07 31.1 0.2 4.8e-07 30.0 0.2 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain HTH_AsnC-type PF13404.1 gi|296243028|ref|YP_003650515.1| - 0.078 12.5 0.2 0.078 12.5 0.2 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|296243028|ref|YP_003650515.1| - 0.11 11.8 0.3 0.29 10.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Peptidase_M50 PF02163.17 gi|296243029|ref|YP_003650516.1| - 4.9e-20 71.2 1.8 4.9e-20 71.2 1.2 2.3 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|296243029|ref|YP_003650516.1| - 5.9e-05 22.8 0.0 0.00012 21.9 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|296243029|ref|YP_003650516.1| - 0.00012 22.1 0.0 0.00026 21.0 0.0 1.6 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|296243029|ref|YP_003650516.1| - 0.083 12.6 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Tricorn protease PDZ domain DUF2759 PF10958.3 gi|296243029|ref|YP_003650516.1| - 0.2 11.2 6.5 1.3 8.7 0.3 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2759) Glyco_hydro_57 PF03065.10 gi|296243030|ref|YP_003650517.1| - 5.4e-96 321.6 0.3 6.7e-96 321.3 0.2 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF2223 PF09985.4 gi|296243030|ref|YP_003650517.1| - 6.5e-66 221.9 1.9 1.4e-65 220.8 1.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) DUF4366 PF14283.1 gi|296243030|ref|YP_003650517.1| - 0.048 13.0 0.0 0.08 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) Pex14_N PF04695.8 gi|296243030|ref|YP_003650517.1| - 0.092 12.7 0.5 0.17 11.9 0.4 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region TMEM154 PF15102.1 gi|296243030|ref|YP_003650517.1| - 0.12 12.0 7.7 0.26 10.9 5.3 1.5 1 0 0 1 1 1 0 TMEM154 protein family MGC-24 PF05283.6 gi|296243030|ref|YP_003650517.1| - 4.6 6.9 14.6 7.9 6.2 10.1 1.2 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24) ABC_tran PF00005.22 gi|296243031|ref|YP_003650518.1| - 7.8e-33 113.6 0.0 1.2e-32 113.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296243031|ref|YP_003650518.1| - 6.9e-09 36.0 0.0 9.9e-05 22.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|296243031|ref|YP_003650518.1| - 1.2e-07 31.6 0.0 1.7e-05 24.8 0.0 3.4 3 0 0 3 3 3 1 TOBE domain TOBE_2 PF08402.5 gi|296243031|ref|YP_003650518.1| - 5.8e-07 29.4 0.0 1.6e-06 27.9 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.14 gi|296243031|ref|YP_003650518.1| - 0.00096 18.4 0.0 0.026 13.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|296243031|ref|YP_003650518.1| - 0.0043 17.8 0.0 0.011 16.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|296243031|ref|YP_003650518.1| - 0.0084 16.4 0.0 0.022 15.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|296243031|ref|YP_003650518.1| - 0.013 15.4 0.1 0.025 14.5 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|296243031|ref|YP_003650518.1| - 0.019 14.8 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|296243031|ref|YP_003650518.1| - 0.027 14.6 0.1 0.064 13.4 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|296243031|ref|YP_003650518.1| - 0.03 14.4 0.3 0.13 12.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|296243031|ref|YP_003650518.1| - 0.062 12.3 0.0 0.29 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.10 gi|296243031|ref|YP_003650518.1| - 0.085 11.5 0.0 0.11 11.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|296243031|ref|YP_003650518.1| - 0.14 11.6 0.0 0.34 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|296243031|ref|YP_003650518.1| - 0.2 11.9 0.1 0.29 11.4 0.1 1.4 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|296243032|ref|YP_003650519.1| - 2.6e-14 53.1 18.3 2.6e-14 53.1 12.7 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|296243033|ref|YP_003650520.1| - 3.8e-18 65.6 12.2 3.8e-18 65.6 8.4 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sec7_N PF12783.2 gi|296243033|ref|YP_003650520.1| - 0.042 13.2 0.1 0.073 12.5 0.0 1.4 1 0 0 1 1 1 0 Guanine nucleotide exchange factor in Golgi transport N-terminal priB_priC PF07445.7 gi|296243033|ref|YP_003650520.1| - 0.1 12.0 0.4 0.16 11.4 0.3 1.2 1 0 0 1 1 1 0 Primosomal replication protein priB and priC ABC_tran PF00005.22 gi|296243034|ref|YP_003650521.1| - 1.4e-18 67.5 0.0 1.8e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|296243034|ref|YP_003650521.1| - 2.2e-12 47.5 0.0 1.3e-05 25.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|296243034|ref|YP_003650521.1| - 8.2e-11 41.5 0.0 1.3e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|296243034|ref|YP_003650521.1| - 0.00031 20.6 0.0 0.00048 20.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|296243034|ref|YP_003650521.1| - 0.00049 19.5 0.0 0.00094 18.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|296243034|ref|YP_003650521.1| - 0.00073 19.9 0.0 0.0014 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|296243034|ref|YP_003650521.1| - 0.0025 17.2 0.0 0.0041 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|296243034|ref|YP_003650521.1| - 0.003 16.7 0.0 0.0043 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|296243034|ref|YP_003650521.1| - 0.0097 14.4 0.1 0.29 9.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain MutS_V PF00488.16 gi|296243034|ref|YP_003650521.1| - 0.01 15.2 0.0 0.2 11.0 0.0 2.0 2 0 0 2 2 2 0 MutS domain V NACHT PF05729.7 gi|296243034|ref|YP_003650521.1| - 0.026 14.1 0.0 1.2 8.7 0.0 2.7 1 1 1 3 3 3 0 NACHT domain AAA PF00004.24 gi|296243034|ref|YP_003650521.1| - 0.029 14.5 0.1 0.14 12.3 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|296243034|ref|YP_003650521.1| - 0.037 13.0 0.0 4.3 6.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|296243034|ref|YP_003650521.1| - 0.038 13.4 0.2 0.85 8.9 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|296243034|ref|YP_003650521.1| - 0.043 14.6 0.1 0.094 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|296243034|ref|YP_003650521.1| - 0.073 12.9 0.0 2 8.3 0.0 2.5 1 1 1 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|296243034|ref|YP_003650521.1| - 0.074 12.4 0.0 0.16 11.3 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.1 gi|296243034|ref|YP_003650521.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain UPF0051 PF01458.12 gi|296243035|ref|YP_003650522.1| - 4e-59 199.8 0.1 4.9e-59 199.5 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|296243036|ref|YP_003650523.1| - 2.9e-11 43.2 0.0 3.9e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) E1-E2_ATPase PF00122.15 gi|296243037|ref|YP_003650524.1| - 3.6e-76 255.2 4.5 3.6e-76 255.2 3.1 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Cation_ATPase_C PF00689.16 gi|296243037|ref|YP_003650524.1| - 1.1e-44 152.1 3.0 1.1e-44 152.1 2.1 2.1 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Hydrolase PF00702.21 gi|296243037|ref|YP_003650524.1| - 1.5e-35 123.5 0.7 1.5e-35 123.5 0.5 2.1 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|296243037|ref|YP_003650524.1| - 1.8e-20 72.1 0.1 5.2e-19 67.4 0.0 3.1 4 0 0 4 4 4 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|296243037|ref|YP_003650524.1| - 8.8e-20 71.6 0.1 3.5e-19 69.7 0.0 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|296243037|ref|YP_003650524.1| - 1.1e-12 47.6 0.0 2.4e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|296243037|ref|YP_003650524.1| - 5.8e-06 26.0 0.5 0.00072 19.2 0.2 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase DUF401 PF04165.7 gi|296243038|ref|YP_003650525.1| - 6.6e-62 209.7 28.3 7.5e-62 209.5 19.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) PALP PF00291.20 gi|296243040|ref|YP_003650527.1| - 7.7e-44 150.1 0.0 1.1e-43 149.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PMT PF02366.13 gi|296243042|ref|YP_003650529.1| - 7.2e-10 38.6 31.6 8.7e-09 35.0 17.7 3.0 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.1 gi|296243042|ref|YP_003650529.1| - 8.6e-09 35.4 19.4 8.6e-09 35.4 13.4 2.5 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase RHH_1 PF01402.16 gi|296243043|ref|YP_003650530.1| - 9.7e-08 31.5 0.2 1.3e-07 31.2 0.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|296243043|ref|YP_003650530.1| - 5e-05 23.3 0.0 5.3e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|296243043|ref|YP_003650530.1| - 0.11 12.2 0.1 0.17 11.7 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) EVE PF01878.13 gi|296243044|ref|YP_003650531.1| - 0.024 14.6 0.0 0.036 14.0 0.0 1.4 1 1 0 1 1 1 0 EVE domain GCD14 PF08704.5 gi|296243045|ref|YP_003650532.1| - 2.9e-30 105.5 0.0 6.1e-28 97.9 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|296243045|ref|YP_003650532.1| - 3e-10 39.8 0.0 4.6e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|296243045|ref|YP_003650532.1| - 1.4e-06 29.0 0.1 4.2e-06 27.5 0.0 1.8 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|296243045|ref|YP_003650532.1| - 2.7e-06 27.3 0.1 8.5e-06 25.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|296243045|ref|YP_003650532.1| - 5.5e-06 26.9 0.0 1.2e-05 25.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|296243045|ref|YP_003650532.1| - 9.4e-06 25.1 0.0 1.3e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|296243045|ref|YP_003650532.1| - 1.6e-05 24.5 0.1 2.7e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.7 gi|296243045|ref|YP_003650532.1| - 5.6e-05 23.5 0.0 0.00073 19.9 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|296243045|ref|YP_003650532.1| - 0.00044 19.4 0.0 0.0011 18.1 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|296243045|ref|YP_003650532.1| - 0.0017 18.6 0.0 0.0029 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain rRNA_methylase PF06962.7 gi|296243045|ref|YP_003650532.1| - 0.011 15.4 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 Putative rRNA methylase GCD14_N PF14801.1 gi|296243045|ref|YP_003650532.1| - 0.012 15.1 0.1 0.023 14.2 0.1 1.5 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_12 PF08242.7 gi|296243045|ref|YP_003650532.1| - 0.016 15.6 0.0 0.14 12.6 0.0 2.4 2 1 0 2 2 2 0 Methyltransferase domain Gcd10p PF04189.8 gi|296243045|ref|YP_003650532.1| - 0.05 12.7 0.0 0.072 12.2 0.0 1.3 1 0 0 1 1 1 0 Gcd10p family Methyltransf_23 PF13489.1 gi|296243045|ref|YP_003650532.1| - 0.066 12.9 0.0 0.2 11.3 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|296243045|ref|YP_003650532.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|296243046|ref|YP_003650533.1| - 1.4e-07 32.0 0.0 1.9e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|296243046|ref|YP_003650533.1| - 4.5e-07 29.3 0.0 7.5e-06 25.3 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_26 PF13659.1 gi|296243046|ref|YP_003650533.1| - 7.3e-07 29.2 0.0 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|296243046|ref|YP_003650533.1| - 3e-06 26.9 0.0 3.7e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|296243046|ref|YP_003650533.1| - 2.8e-05 23.2 0.0 3.2e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|296243046|ref|YP_003650533.1| - 2.9e-05 23.2 0.0 3.5e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|296243046|ref|YP_003650533.1| - 6.3e-05 23.2 0.0 7.7e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|296243046|ref|YP_003650533.1| - 0.0004 20.0 0.0 0.00061 19.4 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|296243046|ref|YP_003650533.1| - 0.00044 20.6 0.0 0.0006 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|296243046|ref|YP_003650533.1| - 0.00072 18.7 0.0 0.00092 18.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|296243046|ref|YP_003650533.1| - 0.0013 18.1 0.0 0.0018 17.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|296243046|ref|YP_003650533.1| - 0.0025 17.1 0.0 0.0032 16.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.5 gi|296243046|ref|YP_003650533.1| - 0.01 15.3 0.0 0.012 15.1 0.0 1.3 1 1 0 1 1 1 0 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.15 gi|296243046|ref|YP_003650533.1| - 0.013 14.5 0.0 0.015 14.3 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|296243046|ref|YP_003650533.1| - 0.12 12.9 0.0 0.23 11.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltrn_RNA_2 PF04013.7 gi|296243048|ref|YP_003650535.1| - 3.6e-07 29.9 0.0 4.2e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Ribosomal_S26e PF01283.14 gi|296243049|ref|YP_003650536.1| - 4.4e-32 110.6 2.8 4.8e-32 110.5 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DZR PF12773.2 gi|296243049|ref|YP_003650536.1| - 0.025 14.3 1.0 0.16 11.7 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|296243049|ref|YP_003650536.1| - 0.029 14.0 0.3 0.1 12.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Sgf11 PF08209.6 gi|296243049|ref|YP_003650536.1| - 0.087 12.1 0.4 0.087 12.1 0.3 1.9 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF164 PF02591.10 gi|296243049|ref|YP_003650536.1| - 0.091 12.6 3.0 0.4 10.5 0.2 2.5 2 1 0 2 2 2 0 Putative zinc ribbon domain DUF35_N PF12172.3 gi|296243049|ref|YP_003650536.1| - 0.12 12.3 0.1 0.12 12.3 0.1 1.9 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) KOW PF00467.24 gi|296243049|ref|YP_003650536.1| - 0.16 11.7 1.1 0.29 10.9 0.2 1.8 2 0 0 2 2 2 0 KOW motif zf-dskA_traR PF01258.12 gi|296243049|ref|YP_003650536.1| - 1 9.1 5.1 8.9 6.1 0.3 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger WCCH PF03716.9 gi|296243049|ref|YP_003650536.1| - 5.7 6.5 8.3 10 5.6 0.1 3.1 3 0 0 3 3 3 0 WCCH motif DNA_pol_B PF00136.16 gi|296243050|ref|YP_003650537.1| - 3.5e-79 266.7 0.1 7.3e-79 265.7 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|296243050|ref|YP_003650537.1| - 8.3e-26 90.6 0.3 1.9e-25 89.4 0.2 1.6 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|296243050|ref|YP_003650537.1| - 0.00059 19.6 0.1 0.0044 16.8 0.0 2.4 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|296243050|ref|YP_003650537.1| - 0.0021 17.6 0.1 0.0042 16.6 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB ACT_6 PF13740.1 gi|296243050|ref|YP_003650537.1| - 0.1 12.3 0.0 0.34 10.6 0.0 1.9 1 0 0 1 1 1 0 ACT domain NAC PF01849.13 gi|296243051|ref|YP_003650538.1| - 1.8e-13 49.7 2.0 5.5e-13 48.2 0.4 2.0 2 0 0 2 2 2 1 NAC domain UBA PF00627.26 gi|296243051|ref|YP_003650538.1| - 7.4e-06 25.6 0.2 1.8e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 UBA/TS-N domain EF-hand_10 PF14788.1 gi|296243051|ref|YP_003650538.1| - 0.0066 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 EF hand SurA_N PF09312.6 gi|296243051|ref|YP_003650538.1| - 0.012 15.4 0.2 0.85 9.4 0.0 2.1 2 0 0 2 2 2 0 SurA N-terminal domain Fe_hyd_lg_C PF02906.9 gi|296243051|ref|YP_003650538.1| - 0.022 14.0 0.1 0.026 13.7 0.1 1.0 1 0 0 1 1 1 0 Iron only hydrogenase large subunit, C-terminal domain PTS_IIB PF02302.12 gi|296243051|ref|YP_003650538.1| - 0.024 15.1 0.6 0.14 12.6 0.0 2.0 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit PASTA PF03793.14 gi|296243051|ref|YP_003650538.1| - 0.061 12.9 0.2 14 5.4 0.0 3.1 2 1 1 3 3 3 0 PASTA domain DUF2460 PF09343.5 gi|296243051|ref|YP_003650538.1| - 0.065 12.5 0.1 0.072 12.4 0.1 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) Sigma70_r3 PF04539.11 gi|296243051|ref|YP_003650538.1| - 0.079 12.8 1.0 0.29 11.0 0.1 2.2 2 1 1 3 3 3 0 Sigma-70 region 3 UBA_4 PF14555.1 gi|296243051|ref|YP_003650538.1| - 0.091 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain Beta-Casp PF10996.3 gi|296243052|ref|YP_003650539.1| - 3.6e-25 88.3 0.0 7.8e-25 87.2 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|296243052|ref|YP_003650539.1| - 1.7e-19 70.2 0.5 3.1e-19 69.4 0.3 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|296243052|ref|YP_003650539.1| - 2.6e-12 46.6 0.1 5.3e-12 45.6 0.1 1.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|296243052|ref|YP_003650539.1| - 6.1e-11 41.9 0.0 1.2e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|296243052|ref|YP_003650539.1| - 0.00019 21.1 0.0 0.00051 19.7 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain SgrR_N PF12793.2 gi|296243053|ref|YP_003650540.1| - 0.00016 21.6 0.0 0.0002 21.3 0.0 1.1 1 0 0 1 1 1 1 Sugar transport-related sRNA regulator N-term TrmB PF01978.14 gi|296243053|ref|YP_003650540.1| - 0.00021 20.9 0.1 0.00028 20.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|296243053|ref|YP_003650540.1| - 0.011 15.2 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Hema_stalk PF08720.5 gi|296243053|ref|YP_003650540.1| - 0.012 15.0 0.0 0.016 14.6 0.0 1.3 1 1 0 1 1 1 0 Influenza C hemagglutinin stalk MarR_2 PF12802.2 gi|296243053|ref|YP_003650540.1| - 0.022 14.4 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.1 gi|296243053|ref|YP_003650540.1| - 0.026 14.3 0.0 0.032 14.0 0.0 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4095 PF13338.1 gi|296243053|ref|YP_003650540.1| - 0.044 13.9 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) Fe_dep_repress PF01325.14 gi|296243053|ref|YP_003650540.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|296243053|ref|YP_003650540.1| - 0.13 12.5 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain GTP_EFTU PF00009.22 gi|296243054|ref|YP_003650541.1| - 1.2e-55 187.8 0.2 2.7e-55 186.7 0.1 1.6 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|296243054|ref|YP_003650541.1| - 7.9e-34 115.7 0.0 4.1e-33 113.4 0.0 2.3 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|296243054|ref|YP_003650541.1| - 4e-21 74.6 0.0 1.9e-20 72.5 0.0 2.1 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|296243054|ref|YP_003650541.1| - 2.6e-20 72.0 0.1 4.9e-20 71.1 0.1 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|296243054|ref|YP_003650541.1| - 2.6e-11 43.4 0.1 7.3e-11 42.0 0.1 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|296243054|ref|YP_003650541.1| - 8e-06 25.8 0.1 2e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|296243054|ref|YP_003650541.1| - 0.042 13.2 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 Ras family DUF3194 PF11419.3 gi|296243055|ref|YP_003650542.1| - 0.0022 18.1 0.3 0.0027 17.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) AMP-binding_C_2 PF14535.1 gi|296243055|ref|YP_003650542.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 1 0 1 1 1 0 AMP-binding enzyme C-terminal domain Prefoldin_2 PF01920.15 gi|296243056|ref|YP_003650543.1| - 1.2e-18 66.8 12.8 1.3e-18 66.7 8.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|296243056|ref|YP_003650543.1| - 0.0021 17.6 9.3 0.4 10.3 0.2 2.2 1 1 0 1 1 1 1 Prefoldin subunit TMF_DNA_bd PF12329.3 gi|296243056|ref|YP_003650543.1| - 0.01 15.6 5.8 0.01 15.6 4.0 2.3 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding RDM PF11002.3 gi|296243056|ref|YP_003650543.1| - 0.029 14.0 0.5 0.029 14.0 0.3 2.2 2 0 0 2 2 2 0 RFPL defining motif (RDM) Vps8 PF12816.2 gi|296243056|ref|YP_003650543.1| - 0.055 12.7 0.2 0.059 12.6 0.1 1.2 1 0 0 1 1 1 0 Golgi CORVET complex core vacuolar protein 8 MCC-bdg_PDZ PF10506.4 gi|296243056|ref|YP_003650543.1| - 0.065 13.0 2.8 2.5 7.9 0.5 2.2 2 0 0 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Tropomyosin PF00261.15 gi|296243056|ref|YP_003650543.1| - 0.09 11.8 7.0 0.12 11.4 1.0 2.2 2 0 0 2 2 2 0 Tropomyosin DUF4140 PF13600.1 gi|296243056|ref|YP_003650543.1| - 0.15 12.5 4.4 1.5 9.3 0.2 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF2968 PF11180.3 gi|296243056|ref|YP_003650543.1| - 0.16 11.3 0.2 0.16 11.3 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) SH3BP5 PF05276.9 gi|296243056|ref|YP_003650543.1| - 0.33 10.2 4.1 0.69 9.1 0.2 2.1 1 1 0 2 2 2 0 SH3 domain-binding protein 5 (SH3BP5) Seryl_tRNA_N PF02403.17 gi|296243056|ref|YP_003650543.1| - 0.42 10.6 10.1 1.1 9.3 0.3 2.2 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DASH_Dad3 PF08656.5 gi|296243056|ref|YP_003650543.1| - 0.45 10.2 6.2 0.22 11.2 0.5 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad3 bZIP_1 PF00170.16 gi|296243056|ref|YP_003650543.1| - 0.48 10.4 11.2 0.12 12.3 3.4 2.4 3 0 0 3 3 3 0 bZIP transcription factor Med28 PF11594.3 gi|296243056|ref|YP_003650543.1| - 0.63 10.3 5.2 2.7 8.2 3.6 1.9 1 1 0 1 1 1 0 Mediator complex subunit 28 FbpA PF05833.6 gi|296243056|ref|YP_003650543.1| - 0.75 8.2 9.3 0.088 11.3 0.4 2.0 1 1 1 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) DUF1342 PF07072.6 gi|296243056|ref|YP_003650543.1| - 0.89 9.1 4.6 0.46 10.1 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1342) Nsp1_C PF05064.8 gi|296243056|ref|YP_003650543.1| - 1.4 8.5 11.1 4.2 7.0 1.8 2.1 1 1 1 2 2 2 0 Nsp1-like C-terminal region FlaC_arch PF05377.6 gi|296243056|ref|YP_003650543.1| - 2.3 8.1 6.2 5.5 6.9 0.3 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Cortex-I_coil PF09304.5 gi|296243056|ref|YP_003650543.1| - 3.8 7.5 10.8 5.4 7.0 0.9 2.3 1 1 1 2 2 2 0 Cortexillin I, coiled coil Brix PF04427.13 gi|296243057|ref|YP_003650544.1| - 5.8e-16 58.7 0.0 6.6e-16 58.5 0.0 1.2 1 0 0 1 1 1 1 Brix domain Ribosomal_L37ae PF01780.14 gi|296243058|ref|YP_003650545.1| - 4.5e-30 103.3 4.0 4.7e-30 103.2 2.8 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|296243058|ref|YP_003650545.1| - 4.3e-06 26.4 1.5 6.6e-06 25.8 1.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|296243058|ref|YP_003650545.1| - 0.00015 21.3 0.3 0.0002 20.9 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rep_fac-A_C PF08646.5 gi|296243058|ref|YP_003650545.1| - 0.02 14.5 0.2 0.025 14.2 0.1 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Lar_restr_allev PF14354.1 gi|296243058|ref|YP_003650545.1| - 0.028 14.7 0.3 0.041 14.1 0.2 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2082 PF09855.4 gi|296243058|ref|YP_003650545.1| - 0.036 13.9 0.4 3.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) A2L_zn_ribbon PF08792.5 gi|296243058|ref|YP_003650545.1| - 0.036 13.5 1.3 3.5 7.2 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.1 gi|296243058|ref|YP_003650545.1| - 0.037 14.3 1.4 0.14 12.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|296243058|ref|YP_003650545.1| - 0.038 13.9 0.3 1.3 9.0 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DUF4379 PF14311.1 gi|296243058|ref|YP_003650545.1| - 0.053 13.3 3.4 0.17 11.7 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-ISL3 PF14690.1 gi|296243058|ref|YP_003650545.1| - 0.091 12.8 3.9 0.77 9.8 0.2 2.6 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF1610 PF07754.6 gi|296243058|ref|YP_003650545.1| - 0.23 11.5 0.6 0.23 11.5 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DUF3797 PF12677.2 gi|296243058|ref|YP_003650545.1| - 0.29 10.7 1.6 5.7 6.6 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) Prim_Zn_Ribbon PF08273.7 gi|296243058|ref|YP_003650545.1| - 0.44 10.6 5.4 1.2 9.3 3.7 1.7 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase UPF0547 PF10571.4 gi|296243058|ref|YP_003650545.1| - 0.47 10.2 3.7 3.1 7.5 0.9 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|296243058|ref|YP_003650545.1| - 0.8 8.9 5.8 1.2 8.4 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|296243058|ref|YP_003650545.1| - 2.7 7.6 4.7 3.1 7.5 0.6 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|296243058|ref|YP_003650545.1| - 5 6.7 8.1 12 5.5 0.9 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNase_PH PF01138.16 gi|296243059|ref|YP_003650546.1| - 7.5e-26 90.9 0.0 5e-25 88.3 0.0 1.9 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|296243059|ref|YP_003650546.1| - 1.9e-11 43.6 1.7 6.2e-11 42.0 0.7 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|296243060|ref|YP_003650547.1| - 1.7e-36 125.4 0.0 2.2e-36 125.0 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|296243060|ref|YP_003650547.1| - 3.7e-16 58.8 0.1 7.1e-16 57.9 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 DUF2958 PF11171.3 gi|296243060|ref|YP_003650547.1| - 0.08 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2958) KH_1 PF00013.24 gi|296243061|ref|YP_003650548.1| - 9.3e-08 31.6 0.0 2.7e-07 30.1 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|296243061|ref|YP_003650548.1| - 0.0005 19.6 0.0 0.0015 18.1 0.0 1.9 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|296243061|ref|YP_003650548.1| - 0.0009 18.7 1.0 0.0016 17.9 0.0 1.9 2 1 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|296243061|ref|YP_003650548.1| - 0.087 12.4 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 KH domain ECR1_N PF14382.1 gi|296243061|ref|YP_003650548.1| - 0.11 11.7 0.2 1.1 8.5 0.1 2.3 2 0 0 2 2 2 0 Exosome complex exonuclease RRP4 N-terminal region SBDS PF01172.13 gi|296243062|ref|YP_003650549.1| - 9.9e-27 92.5 0.1 2e-26 91.6 0.1 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|296243062|ref|YP_003650549.1| - 1e-20 73.6 1.6 1.5e-20 73.1 1.1 1.2 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|296243062|ref|YP_003650549.1| - 0.0041 16.9 0.0 0.0089 15.8 0.0 1.5 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF1949 PF09186.6 gi|296243062|ref|YP_003650549.1| - 0.0083 15.7 0.0 0.022 14.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1949) Proteasome PF00227.21 gi|296243063|ref|YP_003650550.1| - 2.6e-53 180.1 0.1 3.6e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|296243063|ref|YP_003650550.1| - 7.8e-15 53.8 3.5 8.2e-15 53.8 0.2 2.6 3 0 0 3 3 3 1 Proteasome subunit A N-terminal signature adh_short PF00106.20 gi|296243064|ref|YP_003650551.1| - 1.1e-31 110.0 0.2 2.1e-31 109.1 0.1 1.5 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|296243064|ref|YP_003650551.1| - 2.3e-27 96.3 0.0 3e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|296243064|ref|YP_003650551.1| - 4.2e-09 36.3 0.0 6.5e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 KR domain Zn_Tnp_IS1595 PF12760.2 gi|296243065|ref|YP_003650552.1| - 0.00097 18.9 4.8 0.058 13.2 0.8 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|296243065|ref|YP_003650552.1| - 0.0073 16.3 2.1 0.56 10.2 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DnaJ_CXXCXGXG PF00684.14 gi|296243065|ref|YP_003650552.1| - 0.0092 16.0 0.2 0.011 15.7 0.1 1.2 1 0 0 1 1 1 1 DnaJ central domain DUF3268 PF11672.3 gi|296243065|ref|YP_003650552.1| - 0.026 14.6 0.3 0.03 14.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) zf-DNA_Pol PF08996.5 gi|296243065|ref|YP_003650552.1| - 0.031 13.6 0.1 0.036 13.4 0.0 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Zn-ribbon_8 PF09723.5 gi|296243065|ref|YP_003650552.1| - 0.043 13.7 0.4 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|296243065|ref|YP_003650552.1| - 0.053 12.7 3.7 0.59 9.4 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|296243065|ref|YP_003650552.1| - 0.057 13.3 0.1 0.067 13.1 0.1 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) TFIIS_C PF01096.13 gi|296243065|ref|YP_003650552.1| - 0.06 12.9 1.7 1.8 8.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TMEM95 PF15203.1 gi|296243065|ref|YP_003650552.1| - 0.063 12.6 0.0 0.074 12.4 0.0 1.1 1 0 0 1 1 1 0 TMEM95 family zf-C2H2_4 PF13894.1 gi|296243065|ref|YP_003650552.1| - 0.064 13.6 1.3 3.6 8.1 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_4 PF13717.1 gi|296243065|ref|YP_003650552.1| - 0.068 12.8 0.4 8.4 6.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|296243065|ref|YP_003650552.1| - 0.08 12.5 0.4 9.8 5.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|296243065|ref|YP_003650552.1| - 0.091 13.0 2.5 9.9 6.6 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-C4_Topoisom PF01396.14 gi|296243065|ref|YP_003650552.1| - 0.15 11.5 1.6 8 6.0 0.0 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.2 gi|296243065|ref|YP_003650552.1| - 0.17 11.7 1.1 0.45 10.3 0.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-Di19 PF05605.7 gi|296243065|ref|YP_003650552.1| - 0.17 12.0 0.9 2.9 8.0 0.1 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Trm112p PF03966.11 gi|296243065|ref|YP_003650552.1| - 0.17 12.2 0.7 1.1 9.6 0.0 2.0 1 1 1 2 2 2 0 Trm112p-like protein Lar_restr_allev PF14354.1 gi|296243065|ref|YP_003650552.1| - 0.19 12.0 2.6 0.39 11.0 1.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Nop10p PF04135.7 gi|296243065|ref|YP_003650552.1| - 0.2 11.3 0.8 1.8 8.3 0.6 2.0 1 1 0 1 1 1 0 Nucleolar RNA-binding protein, Nop10p family zf-TFIIB PF13453.1 gi|296243065|ref|YP_003650552.1| - 0.27 10.4 2.9 0.7 9.1 2.0 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|296243065|ref|YP_003650552.1| - 0.29 10.8 3.0 1.4 8.6 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CpXC PF14353.1 gi|296243065|ref|YP_003650552.1| - 0.52 10.2 2.3 20 5.1 1.6 2.0 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_2 PF13240.1 gi|296243065|ref|YP_003650552.1| - 0.55 9.8 8.1 0.46 10.0 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|296243065|ref|YP_003650552.1| - 0.85 9.9 4.3 4.3 7.6 1.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain HNH PF01844.18 gi|296243065|ref|YP_003650552.1| - 1.3 8.9 4.2 12 5.8 0.1 2.2 2 0 0 2 2 2 0 HNH endonuclease zf-C2HC_2 PF13913.1 gi|296243065|ref|YP_003650552.1| - 6.4 6.5 7.9 12 5.6 0.5 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Glu_synthase PF01645.12 gi|296243066|ref|YP_003650553.1| - 0.061 12.2 0.0 0.084 11.7 0.0 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase RNase_P_Rpp14 PF01900.14 gi|296243067|ref|YP_003650554.1| - 1.3e-09 37.9 0.0 1.9e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family RNase_P_p30 PF01876.11 gi|296243068|ref|YP_003650555.1| - 1.7e-10 40.3 0.0 2.2e-10 39.9 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 RNA_binding PF01877.12 gi|296243069|ref|YP_003650556.1| - 1.7e-25 89.3 0.0 2.2e-25 88.9 0.0 1.2 1 0 0 1 1 1 1 RNA binding Sec39 PF08314.6 gi|296243069|ref|YP_003650556.1| - 0.011 13.7 0.3 0.0098 13.8 0.2 1.1 1 0 0 1 1 1 0 Secretory pathway protein Sec39 Ribosomal_L15e PF00827.12 gi|296243070|ref|YP_003650557.1| - 7.8e-84 279.9 5.3 1e-83 279.6 3.7 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.5 gi|296243071|ref|YP_003650558.1| - 5.6e-34 116.6 0.0 1.1e-33 115.6 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|296243071|ref|YP_003650558.1| - 1.5e-18 66.7 0.0 4e-18 65.4 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.16 gi|296243071|ref|YP_003650558.1| - 3.1e-13 49.3 0.0 6.3e-13 48.3 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|296243071|ref|YP_003650558.1| - 8.5e-06 25.1 0.3 0.0002 20.6 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|296243071|ref|YP_003650558.1| - 9.6e-05 21.8 0.1 1.4 8.3 0.0 3.1 3 0 0 3 3 3 2 Elongation factor Tu GTP binding domain AAA_29 PF13555.1 gi|296243071|ref|YP_003650558.1| - 0.012 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Peripla_BP_6 PF13458.1 gi|296243071|ref|YP_003650558.1| - 0.013 14.9 0.0 0.062 12.6 0.0 1.9 1 1 0 1 1 1 0 Periplasmic binding protein AAA_23 PF13476.1 gi|296243071|ref|YP_003650558.1| - 0.023 15.0 0.1 0.046 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain YchF-GTPase_C PF06071.8 gi|296243071|ref|YP_003650558.1| - 0.027 14.2 0.0 0.85 9.4 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF933) ABC_tran PF00005.22 gi|296243071|ref|YP_003650558.1| - 0.03 14.6 0.0 0.088 13.1 0.0 1.7 2 0 0 2 2 2 0 ABC transporter Lipid_bd PF12888.2 gi|296243071|ref|YP_003650558.1| - 0.038 13.8 0.0 0.074 12.8 0.0 1.4 1 0 0 1 1 1 0 Lipid-binding putative hydrolase MobB PF03205.9 gi|296243071|ref|YP_003650558.1| - 0.051 13.2 0.1 0.14 11.8 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|296243071|ref|YP_003650558.1| - 0.055 13.9 0.1 0.64 10.5 0.0 2.4 3 0 0 3 3 2 0 Miro-like protein AAA_21 PF13304.1 gi|296243071|ref|YP_003650558.1| - 0.15 12.0 0.1 0.28 11.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF2095 PF09868.4 gi|296243072|ref|YP_003650559.1| - 1.6e-19 69.9 0.4 5.4e-18 65.0 0.3 2.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2095) NTP_transferase PF00483.18 gi|296243073|ref|YP_003650560.1| - 1.3e-33 116.3 0.0 2e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|296243073|ref|YP_003650560.1| - 6.2e-15 53.9 13.4 5.4e-05 22.5 1.9 4.8 2 1 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|296243073|ref|YP_003650560.1| - 4.9e-13 49.4 0.0 7.4e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|296243073|ref|YP_003650560.1| - 0.01 15.3 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.1 gi|296243073|ref|YP_003650560.1| - 0.04 13.4 2.0 2.3 7.8 0.0 3.4 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase ParA PF10609.4 gi|296243073|ref|YP_003650560.1| - 0.095 12.5 0.1 0.35 10.7 0.1 2.0 1 0 0 1 1 1 0 ParA/MinD ATPase like Ribosomal_S3Ae PF01015.13 gi|296243074|ref|YP_003650561.1| - 3.1e-71 238.7 0.6 3.6e-71 238.5 0.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Pcc1 PF09341.5 gi|296243075|ref|YP_003650562.1| - 0.00011 22.1 0.0 0.00014 21.8 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Beta_propel PF09826.4 gi|296243077|ref|YP_003650564.1| - 1e-124 416.7 0.1 1.4e-124 416.3 0.1 1.2 1 0 0 1 1 1 1 Beta propeller domain Luteo_Vpg PF01659.11 gi|296243077|ref|YP_003650564.1| - 0.12 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Luteovirus putative VPg genome linked protein EppA_BapA PF07268.6 gi|296243077|ref|YP_003650564.1| - 0.15 11.7 0.0 0.35 10.5 0.0 1.5 1 0 0 1 1 1 0 Exported protein precursor (EppA/BapA) TrmB PF01978.14 gi|296243078|ref|YP_003650565.1| - 3.4e-09 36.2 0.1 5e-09 35.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|296243078|ref|YP_003650565.1| - 3.5e-08 32.9 0.0 5.1e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|296243078|ref|YP_003650565.1| - 5.7e-07 28.8 0.0 8.9e-07 28.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|296243078|ref|YP_003650565.1| - 9.8e-07 28.4 0.0 1.5e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|296243078|ref|YP_003650565.1| - 1.1e-06 28.1 0.1 1.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|296243078|ref|YP_003650565.1| - 5.5e-06 25.9 0.1 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.11 gi|296243078|ref|YP_003650565.1| - 0.00019 20.9 0.0 0.00031 20.2 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain B-block_TFIIIC PF04182.7 gi|296243078|ref|YP_003650565.1| - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.5 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|296243078|ref|YP_003650565.1| - 0.0054 17.0 0.0 0.009 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|296243078|ref|YP_003650565.1| - 0.0066 16.1 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family DUF2768 PF10966.3 gi|296243078|ref|YP_003650565.1| - 0.0067 16.5 2.2 0.013 15.6 1.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2768) MarR PF01047.17 gi|296243078|ref|YP_003650565.1| - 0.017 14.8 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|296243078|ref|YP_003650565.1| - 0.019 14.8 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.1 gi|296243078|ref|YP_003650565.1| - 0.023 14.2 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|296243078|ref|YP_003650565.1| - 0.026 13.9 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|296243078|ref|YP_003650565.1| - 0.027 14.1 0.1 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|296243078|ref|YP_003650565.1| - 0.029 13.9 0.0 0.06 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_A24 PF01478.13 gi|296243078|ref|YP_003650565.1| - 0.038 14.1 0.3 0.057 13.5 0.2 1.2 1 0 0 1 1 1 0 Type IV leader peptidase family HTH_36 PF13730.1 gi|296243078|ref|YP_003650565.1| - 0.039 14.0 0.0 0.13 12.4 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|296243078|ref|YP_003650565.1| - 0.058 13.5 0.0 0.094 12.8 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein RepL PF05732.6 gi|296243078|ref|YP_003650565.1| - 0.063 12.4 0.0 0.58 9.3 0.0 2.0 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.15 gi|296243078|ref|YP_003650565.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_12 PF08461.5 gi|296243078|ref|YP_003650565.1| - 0.07 12.8 0.2 0.31 10.7 0.1 2.1 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain HTH_11 PF08279.7 gi|296243078|ref|YP_003650565.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|296243078|ref|YP_003650565.1| - 0.15 12.0 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) tRNA_edit PF04073.10 gi|296243079|ref|YP_003650566.1| - 1.5e-33 115.2 0.1 1.7e-33 115.0 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain tRNA_anti-codon PF01336.20 gi|296243081|ref|YP_003650568.1| - 0.28 11.0 2.9 2.6 7.9 0.0 3.7 4 1 0 4 4 4 0 OB-fold nucleic acid binding domain TctA PF01970.11 gi|296243082|ref|YP_003650569.1| - 6.3e-38 130.2 45.4 7.8e-38 129.9 31.5 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family DUF457 PF04307.9 gi|296243083|ref|YP_003650570.1| - 2.2e-16 59.6 0.1 2.1e-12 46.6 0.3 2.2 2 0 0 2 2 2 2 Predicted membrane-bound metal-dependent hydrolase (DUF457) tRNA_anti-codon PF01336.20 gi|296243083|ref|YP_003650570.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain 2TM PF13239.1 gi|296243083|ref|YP_003650570.1| - 0.19 11.8 3.2 9.3 6.3 0.9 2.5 2 0 0 2 2 2 0 2TM domain Adeno_E3_CR2 PF02439.10 gi|296243083|ref|YP_003650570.1| - 0.41 10.2 1.3 0.9 9.1 0.9 1.5 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 DUF360 PF04020.8 gi|296243083|ref|YP_003650570.1| - 1.3 9.3 5.7 1.1e+02 3.1 4.0 2.4 1 1 0 1 1 1 0 Membrane protein of unknown function DUF2157 PF09925.4 gi|296243085|ref|YP_003650572.1| - 0.0083 15.7 0.5 0.0086 15.6 0.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) 2TM PF13239.1 gi|296243085|ref|YP_003650572.1| - 0.0084 16.1 0.3 0.0092 16.0 0.2 1.1 1 0 0 1 1 1 1 2TM domain DUF2892 PF11127.3 gi|296243085|ref|YP_003650572.1| - 0.015 15.1 5.2 0.018 14.8 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF3561 PF12084.3 gi|296243085|ref|YP_003650572.1| - 0.12 12.2 2.9 0.13 12.1 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Glycos_transf_2 PF00535.21 gi|296243086|ref|YP_003650573.1| - 3.6e-10 39.7 0.0 3.7e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|296243086|ref|YP_003650573.1| - 0.14 11.8 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_1 PF00534.15 gi|296243088|ref|YP_003650575.1| - 5e-17 61.8 0.0 8.3e-17 61.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|296243088|ref|YP_003650575.1| - 1.3e-08 35.1 0.0 2.1e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|296243088|ref|YP_003650575.1| - 3.7e-07 30.0 1.4 3.9e-05 23.4 0.2 3.3 3 1 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|296243088|ref|YP_003650575.1| - 0.0038 17.3 4.0 0.0054 16.8 0.9 2.5 3 1 0 3 3 3 1 Glycosyl transferase 4-like domain Exostosin PF03016.10 gi|296243088|ref|YP_003650575.1| - 0.019 13.9 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 Exostosin family Glycos_transf_1 PF00534.15 gi|296243089|ref|YP_003650576.1| - 8.4e-18 64.3 0.1 1.7e-17 63.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|296243089|ref|YP_003650576.1| - 2.8e-12 46.9 0.0 1.1e-11 44.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Thioredoxin_3 PF13192.1 gi|296243091|ref|YP_003650578.1| - 1e-17 63.6 0.1 1.2e-17 63.4 0.1 1.1 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.9 gi|296243091|ref|YP_003650578.1| - 0.015 15.5 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) ArsD PF06953.6 gi|296243091|ref|YP_003650578.1| - 0.043 13.9 0.0 0.048 13.8 0.0 1.2 1 0 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD Ribosomal_S13_N PF08069.7 gi|296243092|ref|YP_003650579.1| - 4.5e-24 84.0 0.1 1.3e-23 82.6 0.0 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|296243092|ref|YP_003650579.1| - 3.3e-21 74.8 0.3 4.7e-21 74.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 KH_3 PF13014.1 gi|296243092|ref|YP_003650579.1| - 0.046 13.3 0.0 0.082 12.5 0.0 1.4 1 0 0 1 1 1 0 KH domain AHH PF14412.1 gi|296243092|ref|YP_003650579.1| - 0.086 12.8 0.1 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 A nuclease family of the HNH/ENDO VII superfamily with conserved AHH Ham1p_like PF01725.11 gi|296243093|ref|YP_003650580.1| - 6.5e-51 172.3 0.0 7.4e-51 172.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family APH PF01636.18 gi|296243094|ref|YP_003650581.1| - 9e-14 51.7 0.2 8.8e-07 28.8 0.1 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family RIO1 PF01163.17 gi|296243094|ref|YP_003650581.1| - 4.4e-12 45.7 0.0 6.1e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|296243094|ref|YP_003650581.1| - 1.5e-10 40.6 0.0 2e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|296243094|ref|YP_003650581.1| - 1.4e-09 37.3 0.0 2e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_Tyr PF07714.12 gi|296243094|ref|YP_003650581.1| - 0.00019 20.5 0.0 0.00024 20.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase DUF234 PF03008.9 gi|296243094|ref|YP_003650581.1| - 0.0027 17.7 0.3 0.01 15.9 0.1 1.9 2 0 0 2 2 2 1 Archaea bacterial proteins of unknown function Peptidase_M22 PF00814.20 gi|296243095|ref|YP_003650582.1| - 3.2e-65 220.3 0.0 3.8e-65 220.0 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family TPP_enzyme_M PF00205.17 gi|296243095|ref|YP_003650582.1| - 0.029 14.1 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Flg_hook PF02120.11 gi|296243095|ref|YP_003650582.1| - 0.032 13.8 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK CheX PF13690.1 gi|296243095|ref|YP_003650582.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX Ribosomal_S27 PF01599.14 gi|296243096|ref|YP_003650583.1| - 2.3e-11 43.3 2.4 2.8e-11 43.0 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.6 gi|296243096|ref|YP_003650583.1| - 0.00076 19.0 0.4 0.00077 19.0 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|296243096|ref|YP_003650583.1| - 0.0022 17.6 0.3 0.0047 16.5 0.1 1.7 2 1 0 2 2 1 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|296243096|ref|YP_003650583.1| - 0.0044 16.7 1.8 0.0049 16.6 1.2 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|296243096|ref|YP_003650583.1| - 0.0049 16.0 2.8 0.11 11.7 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|296243096|ref|YP_003650583.1| - 0.0049 16.1 2.4 2.7 7.3 0.1 2.9 3 0 0 3 3 3 1 TFIIB zinc-binding DZR PF12773.2 gi|296243096|ref|YP_003650583.1| - 0.0058 16.4 0.6 0.007 16.1 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.1 gi|296243096|ref|YP_003650583.1| - 0.0098 15.5 6.0 0.052 13.2 4.2 2.0 1 1 0 1 1 1 1 Nudix N-terminal IBR PF01485.16 gi|296243096|ref|YP_003650583.1| - 0.012 15.4 0.4 0.013 15.3 0.2 1.1 1 0 0 1 1 1 0 IBR domain C1_1 PF00130.17 gi|296243096|ref|YP_003650583.1| - 0.012 15.3 1.1 0.016 14.9 0.7 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) FeS PF04060.8 gi|296243096|ref|YP_003650583.1| - 0.017 14.6 0.4 0.33 10.5 0.0 2.2 2 0 0 2 2 2 0 Putative Fe-S cluster A2L_zn_ribbon PF08792.5 gi|296243096|ref|YP_003650583.1| - 0.027 13.9 1.0 0.58 9.6 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain GFA PF04828.9 gi|296243096|ref|YP_003650583.1| - 0.028 14.3 2.3 0.21 11.5 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2387 PF09526.5 gi|296243096|ref|YP_003650583.1| - 0.05 13.5 0.8 0.068 13.0 0.6 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) FYVE PF01363.16 gi|296243096|ref|YP_003650583.1| - 0.055 13.3 1.2 0.072 12.9 0.8 1.2 1 0 0 1 1 1 0 FYVE zinc finger DUF2082 PF09855.4 gi|296243096|ref|YP_003650583.1| - 0.066 13.0 2.0 3.4 7.5 0.1 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DRP PF06044.7 gi|296243096|ref|YP_003650583.1| - 0.069 12.1 0.3 0.069 12.1 0.2 1.0 1 0 0 1 1 1 0 Dam-replacing family zf-NADH-PPase PF09297.6 gi|296243096|ref|YP_003650583.1| - 0.078 12.4 4.3 2.7 7.5 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|296243096|ref|YP_003650583.1| - 0.086 12.3 5.2 0.32 10.5 0.7 2.3 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|296243096|ref|YP_003650583.1| - 0.22 11.3 2.2 0.31 10.8 1.5 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ISL3 PF14690.1 gi|296243096|ref|YP_003650583.1| - 0.24 11.4 7.0 0.51 10.4 0.4 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-tcix PF14952.1 gi|296243096|ref|YP_003650583.1| - 0.29 10.4 3.9 0.21 10.9 0.4 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Auto_anti-p27 PF06677.7 gi|296243096|ref|YP_003650583.1| - 0.39 10.5 4.3 1.4 8.7 0.8 2.3 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_recom PF13408.1 gi|296243096|ref|YP_003650583.1| - 0.68 10.2 3.2 1.4 9.2 1.8 1.7 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain YhfH PF14149.1 gi|296243096|ref|YP_003650583.1| - 0.7 9.7 5.0 0.42 10.4 0.3 2.1 1 1 1 2 2 2 0 YhfH-like protein DUF4379 PF14311.1 gi|296243096|ref|YP_003650583.1| - 0.72 9.7 3.7 10 6.0 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) UPF0547 PF10571.4 gi|296243096|ref|YP_003650583.1| - 0.97 9.1 6.4 0.92 9.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|296243096|ref|YP_003650583.1| - 0.98 9.4 4.8 0.49 10.3 0.2 2.1 1 1 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|296243096|ref|YP_003650583.1| - 7.1 6.6 7.4 7 6.6 0.7 2.2 1 1 1 2 2 2 0 Rubredoxin Ribosomal_S24e PF01282.14 gi|296243097|ref|YP_003650584.1| - 8.4e-21 73.5 0.0 9.8e-21 73.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e DUF359 PF04019.7 gi|296243098|ref|YP_003650585.1| - 1.2e-17 63.4 0.0 1.8e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|296243099|ref|YP_003650586.1| - 2.1e-13 49.9 0.1 2.4e-13 49.7 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-ribbon_3 PF13248.1 gi|296243099|ref|YP_003650586.1| - 0.0002 20.4 2.4 0.00026 20.0 1.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|296243099|ref|YP_003650586.1| - 0.0003 20.1 1.0 0.00057 19.2 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|296243099|ref|YP_003650586.1| - 0.00068 19.4 1.0 0.00089 19.0 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-C4H2 PF10146.4 gi|296243099|ref|YP_003650586.1| - 0.0021 18.1 0.4 0.0025 17.8 0.3 1.1 1 0 0 1 1 1 1 Zinc finger-containing protein TF_Zn_Ribbon PF08271.7 gi|296243099|ref|YP_003650586.1| - 0.0075 15.5 0.5 0.047 13.0 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding NRDD PF13597.1 gi|296243099|ref|YP_003650586.1| - 0.017 13.2 0.3 0.017 13.2 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase YwqJ-deaminase PF14431.1 gi|296243099|ref|YP_003650586.1| - 0.036 13.9 0.2 0.036 13.9 0.1 1.7 1 1 1 2 2 2 0 YwqJ-like deaminase HypA PF01155.14 gi|296243099|ref|YP_003650586.1| - 0.051 13.2 0.3 0.06 13.0 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family NMD3 PF04981.8 gi|296243099|ref|YP_003650586.1| - 0.061 12.4 1.3 0.15 11.1 0.9 1.6 1 1 1 2 2 2 0 NMD3 family zf-RING_4 PF14570.1 gi|296243099|ref|YP_003650586.1| - 0.065 12.8 1.9 0.1 12.2 1.3 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Prok-RING_1 PF14446.1 gi|296243099|ref|YP_003650586.1| - 0.088 12.5 1.1 0.13 11.9 0.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|296243099|ref|YP_003650586.1| - 0.12 12.3 4.8 1.5 8.8 0.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain HMA PF00403.21 gi|296243099|ref|YP_003650586.1| - 0.15 12.1 0.8 0.26 11.4 0.6 1.3 1 1 0 1 1 1 0 Heavy-metal-associated domain zf-C4_Topoisom PF01396.14 gi|296243099|ref|YP_003650586.1| - 0.15 11.5 3.1 1.6 8.3 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger GFA PF04828.9 gi|296243099|ref|YP_003650586.1| - 0.19 11.7 1.5 1.1 9.2 1.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme NOB1_Zn_bind PF08772.6 gi|296243099|ref|YP_003650586.1| - 0.22 11.3 1.5 0.24 11.2 1.0 1.3 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ISL3 PF14690.1 gi|296243099|ref|YP_003650586.1| - 0.25 11.4 4.2 0.34 10.9 0.5 2.7 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 PhnA_Zn_Ribbon PF08274.7 gi|296243099|ref|YP_003650586.1| - 0.33 10.7 1.7 0.78 9.5 1.2 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-IS66 PF13005.2 gi|296243099|ref|YP_003650586.1| - 0.36 10.8 4.9 11 6.1 0.1 2.6 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 RNA_POL_M_15KD PF02150.11 gi|296243099|ref|YP_003650586.1| - 0.37 10.5 4.7 2 8.1 0.3 2.3 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit RRN7 PF11781.3 gi|296243099|ref|YP_003650586.1| - 2.4 7.7 5.8 0.86 9.1 0.2 2.3 2 1 1 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn_Tnp_IS1595 PF12760.2 gi|296243099|ref|YP_003650586.1| - 3.8 7.3 5.9 2.7 7.8 1.9 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.6 gi|296243099|ref|YP_003650586.1| - 8 6.6 7.6 22 5.2 4.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) VP_N-CPKC PF11475.3 gi|296243099|ref|YP_003650586.1| - 10 5.7 6.0 16 5.1 0.8 2.1 1 1 1 2 2 2 0 Virion protein N terminal domain SHS2_Rpb7-N PF03876.12 gi|296243100|ref|YP_003650587.1| - 6.3e-14 51.8 0.1 2.7e-13 49.8 0.0 2.1 2 1 0 2 2 2 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|296243100|ref|YP_003650587.1| - 1.6e-09 37.7 1.0 1.6e-06 28.1 0.3 2.4 1 1 0 2 2 2 2 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|296243100|ref|YP_003650587.1| - 5e-05 23.4 0.0 0.00013 22.1 0.0 1.6 1 1 1 2 2 2 1 RNA polymerase III subunit Rpc25 Fcf1 PF04900.7 gi|296243101|ref|YP_003650588.1| - 1.4e-09 37.9 0.1 1.9e-09 37.4 0.1 1.3 1 1 0 1 1 1 1 Fcf1 RNase_Zc3h12a PF11977.3 gi|296243101|ref|YP_003650588.1| - 0.036 13.8 0.0 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 Zc3h12a-like Ribonuclease NYN domain GTP_EFTU PF00009.22 gi|296243102|ref|YP_003650589.1| - 1.3e-40 138.8 0.0 2.4e-40 138.0 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|296243102|ref|YP_003650589.1| - 2.3e-24 85.2 0.6 4.3e-24 84.3 0.4 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|296243102|ref|YP_003650589.1| - 3.5e-07 30.2 0.3 4.4e-06 26.7 0.3 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|296243102|ref|YP_003650589.1| - 0.00038 20.4 0.0 0.00081 19.3 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|296243102|ref|YP_003650589.1| - 0.005 16.3 0.3 0.41 10.1 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|296243102|ref|YP_003650589.1| - 0.0083 16.6 0.0 0.02 15.3 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|296243102|ref|YP_003650589.1| - 0.04 13.1 0.3 3.6 6.8 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|296243102|ref|YP_003650589.1| - 0.095 12.5 0.0 0.22 11.3 0.0 2.0 1 1 0 1 1 1 0 Dynamin family MobB PF03205.9 gi|296243102|ref|YP_003650589.1| - 0.11 12.2 0.5 0.22 11.2 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Ribosomal_S6e PF01092.14 gi|296243103|ref|YP_003650590.1| - 5.9e-28 97.0 0.3 1.3e-27 95.8 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S6e GTP_EFTU PF00009.22 gi|296243104|ref|YP_003650591.1| - 5.4e-34 117.2 0.0 1.8e-33 115.5 0.0 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|296243104|ref|YP_003650591.1| - 3.4e-24 84.8 0.3 7.1e-24 83.7 0.2 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|296243104|ref|YP_003650591.1| - 2.6e-21 75.0 0.9 8.4e-21 73.4 0.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|296243104|ref|YP_003650591.1| - 8.7e-13 48.1 2.1 1.6e-10 40.9 0.0 3.3 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|296243104|ref|YP_003650591.1| - 1.6e-05 24.8 0.0 4e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|296243104|ref|YP_003650591.1| - 2.5e-05 24.7 0.0 7.4e-05 23.2 0.0 1.9 2 0 0 2 2 1 1 Miro-like protein AAA_22 PF13401.1 gi|296243104|ref|YP_003650591.1| - 0.00087 19.4 0.0 0.0028 17.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|296243104|ref|YP_003650591.1| - 0.0031 17.0 0.0 0.016 14.7 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Ras PF00071.17 gi|296243104|ref|YP_003650591.1| - 0.0066 15.8 0.0 0.056 12.8 0.0 2.6 1 1 1 2 2 2 1 Ras family Dynamin_N PF00350.18 gi|296243104|ref|YP_003650591.1| - 0.0079 16.0 0.0 0.088 12.6 0.0 2.3 2 0 0 2 2 2 1 Dynamin family PduV-EutP PF10662.4 gi|296243104|ref|YP_003650591.1| - 0.036 13.5 0.0 0.27 10.7 0.0 2.4 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Arf PF00025.16 gi|296243104|ref|YP_003650591.1| - 0.043 13.0 0.0 16 4.7 0.0 2.9 2 1 0 2 2 2 0 ADP-ribosylation factor family MobB PF03205.9 gi|296243104|ref|YP_003650591.1| - 0.059 13.0 0.2 0.22 11.2 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Rubrerythrin PF02915.12 gi|296243105|ref|YP_003650592.1| - 5.6e-07 29.9 11.4 2.3e-06 27.9 6.8 2.0 1 1 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|296243105|ref|YP_003650592.1| - 0.01 16.0 3.1 0.028 14.6 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) FRD2 PF03197.8 gi|296243105|ref|YP_003650592.1| - 0.014 15.9 0.2 0.02 15.4 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage FRD2 protein EST1_DNA_bind PF10373.4 gi|296243105|ref|YP_003650592.1| - 0.055 12.6 0.5 0.06 12.5 0.4 1.1 1 0 0 1 1 1 0 Est1 DNA/RNA binding domain Ferritin_2 PF13668.1 gi|296243105|ref|YP_003650592.1| - 0.092 12.6 0.8 0.13 12.1 0.6 1.3 1 1 0 1 1 1 0 Ferritin-like domain DNA_primase_lrg PF04104.9 gi|296243105|ref|YP_003650592.1| - 0.15 11.3 1.1 0.18 11.0 0.7 1.2 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit PRESAN PF09687.5 gi|296243105|ref|YP_003650592.1| - 0.16 12.0 2.3 0.31 11.0 0.8 2.0 1 1 1 2 2 2 0 Plasmodium RESA N-terminal DUF3562 PF12085.3 gi|296243105|ref|YP_003650592.1| - 0.16 11.8 0.4 0.53 10.1 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) GRIM-19 PF06212.7 gi|296243105|ref|YP_003650592.1| - 0.27 10.9 3.2 0.22 11.2 1.3 1.5 1 1 0 1 1 1 0 GRIM-19 protein WAC_Acf1_DNA_bd PF10537.4 gi|296243105|ref|YP_003650592.1| - 0.31 11.2 1.9 1.2 9.2 1.3 2.1 1 1 0 1 1 1 0 ATP-utilising chromatin assembly and remodelling N-terminal ArsC PF03960.10 gi|296243105|ref|YP_003650592.1| - 0.62 10.1 3.6 1.3 9.1 2.2 1.9 1 1 0 1 1 1 0 ArsC family eIF3_N PF09440.5 gi|296243105|ref|YP_003650592.1| - 0.73 9.9 5.8 0.47 10.6 1.2 2.1 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain RPA_interact_M PF14767.1 gi|296243105|ref|YP_003650592.1| - 2.5 8.8 9.1 0.82 10.4 0.8 2.7 2 1 1 3 3 3 0 Replication protein A interacting middle DUF1295 PF06966.7 gi|296243106|ref|YP_003650593.1| - 1.2e-05 24.7 0.1 2.2e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) ICMT PF04140.9 gi|296243106|ref|YP_003650593.1| - 1.6e-05 25.0 0.9 6.2e-05 23.1 0.1 2.5 2 1 0 2 2 2 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family NnrU PF07298.6 gi|296243106|ref|YP_003650593.1| - 0.00013 21.3 0.4 0.00052 19.4 0.1 2.2 1 1 1 2 2 2 1 NnrU protein PEMT PF04191.8 gi|296243106|ref|YP_003650593.1| - 0.00024 21.1 0.4 0.00024 21.1 0.3 3.4 4 1 0 4 4 4 1 Phospholipid methyltransferase Ribosomal_L24e PF01246.15 gi|296243107|ref|YP_003650594.1| - 1e-20 73.3 0.6 1.1e-20 73.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|296243107|ref|YP_003650594.1| - 5.1e-06 26.0 0.5 6.8e-06 25.6 0.4 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF581 PF04570.9 gi|296243107|ref|YP_003650594.1| - 0.024 13.9 1.3 0.04 13.1 0.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF581) Baculo_RING PF05883.6 gi|296243107|ref|YP_003650594.1| - 0.035 13.9 0.1 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 Baculovirus U-box/Ring-like domain DUF2116 PF09889.4 gi|296243107|ref|YP_003650594.1| - 0.1 12.3 1.3 0.42 10.4 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2175 PF09943.4 gi|296243107|ref|YP_003650594.1| - 0.11 12.5 0.1 0.12 12.4 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) Ribosomal_S28e PF01200.13 gi|296243108|ref|YP_003650595.1| - 2.8e-30 103.8 5.3 3.7e-30 103.4 3.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|296243108|ref|YP_003650595.1| - 0.032 13.9 0.7 0.66 9.8 0.1 2.8 2 1 0 2 2 2 0 KOW motif Ribosomal_L7Ae PF01248.21 gi|296243109|ref|YP_003650596.1| - 3.7e-31 106.4 0.9 4.7e-31 106.1 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|296243109|ref|YP_003650596.1| - 0.002 18.0 0.0 0.0024 17.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|296243109|ref|YP_003650596.1| - 0.0042 16.8 0.3 0.0076 16.0 0.1 1.5 1 1 0 1 1 1 1 PELOTA RNA binding domain DUF3303 PF11746.3 gi|296243109|ref|YP_003650596.1| - 0.073 13.4 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3303) RRF PF01765.14 gi|296243109|ref|YP_003650596.1| - 0.13 11.7 0.8 1.7 8.0 0.1 2.0 2 0 0 2 2 2 0 Ribosome recycling factor DUF3420 PF11900.3 gi|296243109|ref|YP_003650596.1| - 0.33 11.0 1.6 2.5 8.2 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF3420) tRNA-synt_1c PF00749.16 gi|296243110|ref|YP_003650597.1| - 3.7e-69 232.7 0.0 5.4e-69 232.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|296243110|ref|YP_003650597.1| - 1.9e-24 86.2 0.0 3.9e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain CbiD PF01888.12 gi|296243110|ref|YP_003650597.1| - 0.026 13.4 0.0 0.044 12.7 0.0 1.2 1 0 0 1 1 1 0 CbiD DUF2118 PF09891.4 gi|296243111|ref|YP_003650598.1| - 6.5e-16 58.3 0.2 7.6e-16 58.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) Phytoreo_S7 PF07236.6 gi|296243111|ref|YP_003650598.1| - 0.054 11.8 0.0 0.062 11.6 0.0 1.1 1 0 0 1 1 1 0 Phytoreovirus S7 protein FMN_dh PF01070.13 gi|296243112|ref|YP_003650599.1| - 3.7e-22 78.6 0.1 1.2e-12 47.3 0.0 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase DeoC PF01791.4 gi|296243112|ref|YP_003650599.1| - 0.0022 17.3 0.1 0.0049 16.1 0.0 1.5 1 0 0 1 1 1 1 DeoC/LacD family aldolase Memo PF01875.12 gi|296243113|ref|YP_003650600.1| - 2.6e-80 269.2 0.0 2.9e-80 269.0 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein Anp1 PF03452.9 gi|296243113|ref|YP_003650600.1| - 0.024 13.7 0.0 0.07 12.2 0.0 1.7 2 0 0 2 2 2 0 Anp1 LigB PF02900.13 gi|296243113|ref|YP_003650600.1| - 0.08 11.9 0.1 0.17 10.8 0.1 1.5 1 1 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.15 gi|296243114|ref|YP_003650601.1| - 1e-38 132.6 0.0 2e-18 66.3 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 RNA_pol_N PF01194.12 gi|296243115|ref|YP_003650602.1| - 4.6e-31 106.6 0.1 5.1e-31 106.4 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|296243115|ref|YP_003650602.1| - 0.0073 16.3 0.1 0.011 15.7 0.0 1.4 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.14 gi|296243116|ref|YP_003650603.1| - 1.2e-32 112.7 0.0 1.4e-32 112.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.13 gi|296243117|ref|YP_003650604.1| - 4.8e-28 97.7 0.3 6e-28 97.4 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 UPF0086 PF01868.11 gi|296243117|ref|YP_003650604.1| - 0.085 12.5 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function UPF0086 Ribosomal_L18e PF00828.14 gi|296243118|ref|YP_003650605.1| - 3.6e-14 53.2 0.1 4.4e-14 52.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Pho86 PF11124.3 gi|296243118|ref|YP_003650605.1| - 0.13 11.2 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 RNA_pol_A_bac PF01000.21 gi|296243119|ref|YP_003650606.1| - 6.6e-25 87.4 0.0 2.4e-24 85.6 0.0 1.9 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|296243119|ref|YP_003650606.1| - 1.1e-13 50.0 0.0 1.4e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_7 PF12838.2 gi|296243119|ref|YP_003650606.1| - 2e-07 31.2 7.4 4e-07 30.2 5.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|296243119|ref|YP_003650606.1| - 1.3e-06 28.0 6.4 2.7e-06 27.0 4.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|296243119|ref|YP_003650606.1| - 3.1e-06 27.3 7.7 6.1e-06 26.4 5.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|296243119|ref|YP_003650606.1| - 6.5e-06 25.5 9.2 0.0015 18.0 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|296243119|ref|YP_003650606.1| - 0.00021 21.0 7.2 0.00039 20.2 5.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|296243119|ref|YP_003650606.1| - 0.00026 21.6 6.1 0.064 13.9 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|296243119|ref|YP_003650606.1| - 0.0012 18.5 9.1 0.12 12.3 1.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|296243119|ref|YP_003650606.1| - 0.0023 18.2 6.2 0.029 14.7 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|296243119|ref|YP_003650606.1| - 0.0035 17.1 10.6 0.038 13.8 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|296243119|ref|YP_003650606.1| - 0.0051 17.0 9.8 0.34 11.3 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|296243119|ref|YP_003650606.1| - 0.0056 17.0 4.7 0.58 10.6 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|296243119|ref|YP_003650606.1| - 0.006 17.0 15.2 0.074 13.6 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|296243119|ref|YP_003650606.1| - 0.0097 15.9 10.9 0.085 12.8 7.3 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|296243119|ref|YP_003650606.1| - 0.85 10.2 9.6 1 9.9 0.6 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|296243119|ref|YP_003650606.1| - 5.5 7.4 6.9 20 5.6 1.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Ribosomal_S11 PF00411.14 gi|296243120|ref|YP_003650607.1| - 1e-42 144.7 0.2 1.2e-42 144.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 M20_dimer PF07687.9 gi|296243120|ref|YP_003650607.1| - 0.016 14.9 0.2 0.027 14.2 0.2 1.3 1 0 0 1 1 1 0 Peptidase dimerisation domain S4 PF01479.20 gi|296243121|ref|YP_003650608.1| - 3.3e-16 58.4 0.1 6.8e-16 57.4 0.1 1.5 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|296243121|ref|YP_003650608.1| - 1.6e-07 31.5 0.7 2.4e-07 31.0 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain DUF530 PF04409.7 gi|296243121|ref|YP_003650608.1| - 0.11 10.6 0.6 0.12 10.4 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF530) Ribosomal_S13 PF00416.17 gi|296243122|ref|YP_003650609.1| - 2.1e-27 95.6 0.0 2.7e-27 95.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 Ribosomal_S10 PF00338.17 gi|296243123|ref|YP_003650610.1| - 1.6e-27 95.1 0.2 1.8e-27 95.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|296243124|ref|YP_003650611.1| - 1.8e-56 190.5 0.0 2.7e-56 189.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|296243124|ref|YP_003650611.1| - 1.8e-30 105.0 0.1 9.7e-30 102.6 0.0 2.2 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|296243124|ref|YP_003650611.1| - 2.8e-16 59.3 2.3 6.3e-16 58.2 1.6 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|296243124|ref|YP_003650611.1| - 2.7e-08 33.3 1.5 7.3e-08 31.9 1.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|296243124|ref|YP_003650611.1| - 7.6e-06 25.8 0.0 3.8e-05 23.6 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|296243124|ref|YP_003650611.1| - 0.001 19.5 0.1 0.012 16.1 0.1 2.4 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|296243124|ref|YP_003650611.1| - 0.042 13.6 0.0 8.9 6.0 0.0 2.3 1 1 1 2 2 2 0 Dynamin family Septin PF00735.13 gi|296243124|ref|YP_003650611.1| - 0.051 12.5 0.0 0.21 10.5 0.0 2.0 2 1 0 2 2 2 0 Septin FeoB_N PF02421.13 gi|296243124|ref|YP_003650611.1| - 0.14 11.4 0.0 2.3 7.4 0.0 2.7 2 1 0 2 2 2 0 Ferrous iron transport protein B Ribosomal_S7 PF00177.16 gi|296243125|ref|YP_003650612.1| - 2.9e-47 159.9 0.2 3.5e-47 159.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DNase-RNase PF02577.9 gi|296243126|ref|YP_003650613.1| - 3.1e-06 26.4 0.0 3.5e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease A1_Propeptide PF07966.7 gi|296243126|ref|YP_003650613.1| - 0.14 11.9 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 A1 Propeptide Ribosom_S12_S23 PF00164.20 gi|296243127|ref|YP_003650614.1| - 6.3e-39 132.1 0.2 7.3e-39 131.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|296243128|ref|YP_003650615.1| - 2e-14 52.9 2.7 6.3e-09 35.2 0.1 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|296243128|ref|YP_003650615.1| - 9.7e-14 50.9 2.3 2.6e-12 46.3 0.2 2.3 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|296243128|ref|YP_003650615.1| - 2.5e-09 36.6 0.2 0.00026 20.5 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|296243128|ref|YP_003650615.1| - 3.9e-07 29.6 2.0 0.0017 17.9 0.1 2.7 3 0 0 3 3 3 2 KH domain DUF3239 PF11580.3 gi|296243128|ref|YP_003650615.1| - 0.038 13.9 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3239) Ribosomal_L7Ae PF01248.21 gi|296243129|ref|YP_003650616.1| - 7.5e-17 60.6 0.0 8.5e-17 60.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|296243130|ref|YP_003650617.1| - 7.3e-51 173.0 1.4 9.6e-51 172.6 0.9 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_7 PF04990.7 gi|296243130|ref|YP_003650617.1| - 0.0012 18.5 2.0 0.003 17.2 0.1 2.4 2 1 1 3 3 3 1 RNA polymerase Rpb1, domain 7 Rotamase_2 PF13145.1 gi|296243130|ref|YP_003650617.1| - 0.03 14.9 0.6 0.066 13.8 0.1 1.8 2 0 0 2 2 2 0 PPIC-type PPIASE domain DUF4355 PF14265.1 gi|296243130|ref|YP_003650617.1| - 4.2 7.3 7.1 14 5.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) RNA_pol_Rpb1_1 PF04997.7 gi|296243131|ref|YP_003650618.1| - 5.1e-88 295.5 0.0 1.4e-87 294.0 0.0 1.7 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|296243131|ref|YP_003650618.1| - 5.1e-70 234.7 0.0 1.3e-69 233.4 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|296243131|ref|YP_003650618.1| - 9e-35 119.7 0.0 1.6e-34 118.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|296243131|ref|YP_003650618.1| - 2.4e-28 99.1 0.1 4e-28 98.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|296243131|ref|YP_003650618.1| - 5.8e-25 87.1 0.0 1.2e-24 86.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 Zn-ribbon_8 PF09723.5 gi|296243131|ref|YP_003650618.1| - 0.1 12.5 3.8 0.84 9.6 0.0 3.1 3 0 0 3 3 3 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|296243131|ref|YP_003650618.1| - 0.27 10.5 10.7 0.2 10.9 1.0 3.2 2 1 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|296243131|ref|YP_003650618.1| - 4.9 7.2 10.2 0.99 9.4 0.1 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_pol_Rpb2_6 PF00562.23 gi|296243132|ref|YP_003650619.1| - 2.2e-129 431.5 0.0 3.7e-129 430.8 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|296243132|ref|YP_003650619.1| - 5.2e-50 169.1 0.0 7.4e-50 168.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|296243132|ref|YP_003650619.1| - 2.1e-28 99.0 0.2 1.1e-27 96.6 0.1 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|296243132|ref|YP_003650619.1| - 1.1e-25 89.1 0.0 2.4e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_7 PF04560.15 gi|296243132|ref|YP_003650619.1| - 5.6e-24 84.2 0.0 1.1e-23 83.2 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|296243132|ref|YP_003650619.1| - 4.3e-22 77.7 0.2 1.4e-21 76.0 0.1 2.0 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|296243132|ref|YP_003650619.1| - 3.3e-12 46.1 1.7 1.4e-11 44.1 1.2 2.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 DUF3945 PF13101.1 gi|296243132|ref|YP_003650619.1| - 0.002 17.3 0.1 1 8.6 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF3945) RRN7 PF11781.3 gi|296243132|ref|YP_003650619.1| - 0.32 10.5 0.5 0.64 9.5 0.3 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 RNA_pol_Rpb5_C PF01191.14 gi|296243133|ref|YP_003650620.1| - 1.4e-30 104.6 0.0 1.6e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain MS_channel PF00924.13 gi|296243134|ref|YP_003650621.1| - 9.1e-52 175.3 1.5 9.1e-52 175.3 1.1 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|296243134|ref|YP_003650621.1| - 0.0013 18.3 2.9 0.0013 18.3 2.0 2.2 2 0 0 2 2 2 1 Conserved TM helix VirB3 PF05101.8 gi|296243134|ref|YP_003650621.1| - 8.6 6.4 12.2 2 8.4 1.6 2.5 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein DUF432 PF04254.8 gi|296243135|ref|YP_003650622.1| - 1.2e-21 76.8 0.1 1.8e-21 76.2 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) DUF2366 PF10171.4 gi|296243135|ref|YP_003650622.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2366)