# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- HEPN PF05168.14 gi|327309924|ref|YP_004336821.1| - 1.7e-28 99.1 2.6 2.1e-28 98.8 2.6 1.0 1 0 0 1 1 1 1 HEPN domain NICE-3 PF07406.11 gi|327309924|ref|YP_004336821.1| - 0.0043 17.1 0.1 0.0059 16.6 0.1 1.4 1 1 0 1 1 1 1 NICE-3 protein HBS1_N PF08938.10 gi|327309924|ref|YP_004336821.1| - 0.058 13.7 0.1 0.13 12.6 0.1 1.6 1 1 0 1 1 1 0 HBS1 N-terminus NTP_transf_2 PF01909.23 gi|327309925|ref|YP_004336822.1| - 2.8e-10 40.4 0.0 3.3e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327309925|ref|YP_004336822.1| - 1.2e-07 31.7 0.0 1.4e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|327309925|ref|YP_004336822.1| - 0.00068 19.8 0.0 0.00075 19.7 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm APS_kinase PF01583.20 gi|327309926|ref|YP_004336823.1| - 6.7e-58 195.1 0.0 8.3e-58 194.8 0.0 1.0 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|327309926|ref|YP_004336823.1| - 2.4e-07 31.0 0.1 3.3e-07 30.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|327309926|ref|YP_004336823.1| - 7.7e-05 22.3 0.0 7.9e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|327309926|ref|YP_004336823.1| - 0.00018 22.0 0.0 0.00025 21.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327309926|ref|YP_004336823.1| - 0.0058 17.0 0.0 0.007 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|327309926|ref|YP_004336823.1| - 0.0086 15.4 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.15 gi|327309926|ref|YP_004336823.1| - 0.027 14.4 0.0 0.055 13.4 0.0 1.5 1 0 0 1 1 1 0 NTPase MeaB PF03308.16 gi|327309926|ref|YP_004336823.1| - 0.031 13.3 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|327309926|ref|YP_004336823.1| - 0.033 13.7 0.4 0.071 12.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain 6PF2K PF01591.18 gi|327309926|ref|YP_004336823.1| - 0.052 12.8 0.0 0.085 12.1 0.0 1.4 1 1 0 1 1 1 0 6-phosphofructo-2-kinase Phosphodiest PF01663.22 gi|327309927|ref|YP_004336824.1| - 5.5e-40 138.1 0.0 6.5e-40 137.8 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PRP4 PF08799.11 gi|327309928|ref|YP_004336825.1| - 0.022 14.3 3.0 6.5 6.4 0.0 2.3 2 1 0 2 2 2 0 pre-mRNA processing factor 4 (PRP4) like SeqA_N PF17206.3 gi|327309928|ref|YP_004336825.1| - 0.036 13.4 0.1 1 8.7 0.0 2.1 2 0 0 2 2 2 0 SeqA protein N-terminal domain Sulfatase PF00884.23 gi|327309929|ref|YP_004336826.1| - 1.1e-19 70.9 0.0 2.4e-19 69.9 0.0 1.5 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|327309929|ref|YP_004336826.1| - 3.3e-08 33.5 0.3 7.3e-05 22.5 0.0 2.4 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|327309929|ref|YP_004336826.1| - 0.077 11.6 0.0 0.1 11.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_2 PF00535.26 gi|327309930|ref|YP_004336827.1| - 9.9e-17 61.3 0.0 1.3e-16 60.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|327309930|ref|YP_004336827.1| - 3e-07 30.6 0.0 4.3e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|327309930|ref|YP_004336827.1| - 1.6e-05 24.6 0.0 2.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|327309930|ref|YP_004336827.1| - 0.012 16.1 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 DUF2062 PF09835.9 gi|327309930|ref|YP_004336827.1| - 0.43 10.4 4.0 0.79 9.6 4.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) Glycos_transf_1 PF00534.20 gi|327309933|ref|YP_004336830.1| - 1.5e-13 50.6 0.1 3.4e-13 49.5 0.1 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327309933|ref|YP_004336830.1| - 1.2e-11 45.1 0.0 3.2e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|327309933|ref|YP_004336830.1| - 0.0017 18.7 0.0 0.0039 17.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|327309935|ref|YP_004336832.1| - 0.072 12.6 0.0 0.082 12.4 0.0 1.0 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|327309936|ref|YP_004336833.1| - 1e-32 113.1 0.0 1.7e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327309936|ref|YP_004336833.1| - 4.6e-23 82.1 0.0 8e-23 81.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|327309936|ref|YP_004336833.1| - 1.5e-09 38.1 0.7 2.9e-09 37.1 0.1 1.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|327309936|ref|YP_004336833.1| - 0.00023 21.5 0.0 0.00046 20.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|327309937|ref|YP_004336834.1| - 5.4e-39 133.5 0.0 7.9e-39 132.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327309937|ref|YP_004336834.1| - 4.1e-27 95.2 0.0 6.5e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|327309937|ref|YP_004336834.1| - 5.1e-20 72.1 0.0 9.4e-20 71.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|327309937|ref|YP_004336834.1| - 5.1e-10 40.0 0.0 8.9e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|327309937|ref|YP_004336834.1| - 6e-10 39.4 0.0 1.1e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_tranf_2_3 PF13641.6 gi|327309938|ref|YP_004336835.1| - 4e-07 30.2 0.0 1.1e-06 28.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|327309938|ref|YP_004336835.1| - 3.3e-06 27.0 0.1 4.3e-06 26.7 0.1 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|327309938|ref|YP_004336835.1| - 0.039 13.9 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family group 2 3Beta_HSD PF01073.19 gi|327309939|ref|YP_004336836.1| - 4.6e-09 35.7 0.0 5.1e-09 35.5 0.0 1.0 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.21 gi|327309939|ref|YP_004336836.1| - 5.9e-09 35.7 0.0 7e-09 35.5 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|327309939|ref|YP_004336836.1| - 4.9e-08 32.7 0.0 5.4e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|327309939|ref|YP_004336836.1| - 0.0006 19.7 0.0 0.00073 19.5 0.0 1.1 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|327309939|ref|YP_004336836.1| - 0.00067 19.2 0.0 0.00068 19.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.15 gi|327309939|ref|YP_004336836.1| - 0.0021 17.2 0.0 0.0026 17.0 0.0 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NmrA PF05368.13 gi|327309939|ref|YP_004336836.1| - 0.0025 17.4 0.1 0.003 17.1 0.1 1.2 1 1 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.12 gi|327309939|ref|YP_004336836.1| - 0.0076 15.4 0.1 0.0082 15.3 0.1 1.2 1 1 0 1 1 1 1 Male sterility protein KR PF08659.10 gi|327309939|ref|YP_004336836.1| - 0.031 14.2 0.1 0.046 13.6 0.1 1.2 1 1 0 1 1 1 0 KR domain MutS_I PF01624.20 gi|327309939|ref|YP_004336836.1| - 0.035 14.3 0.0 0.047 13.9 0.0 1.3 1 1 0 1 1 1 0 MutS domain I 3HCDH_N PF02737.18 gi|327309939|ref|YP_004336836.1| - 0.059 13.3 0.0 0.063 13.1 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|327309939|ref|YP_004336836.1| - 0.093 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|327309939|ref|YP_004336836.1| - 0.093 13.3 0.0 0.11 13.1 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glycos_transf_1 PF00534.20 gi|327309940|ref|YP_004336837.1| - 7e-34 116.8 0.0 1.1e-33 116.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327309940|ref|YP_004336837.1| - 2.2e-26 92.9 0.1 4.3e-26 91.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|327309940|ref|YP_004336837.1| - 1.4e-15 57.7 0.2 2.8e-15 56.8 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|327309940|ref|YP_004336837.1| - 6.7e-13 49.4 0.0 1.4e-12 48.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|327309940|ref|YP_004336837.1| - 1.2e-06 28.5 0.1 2.2e-06 27.5 0.1 1.4 1 1 0 1 1 1 1 Starch synthase catalytic domain PIGA PF08288.12 gi|327309940|ref|YP_004336837.1| - 0.0045 17.5 0.0 0.0096 16.5 0.0 1.5 1 0 0 1 1 1 1 PIGA (GPI anchor biosynthesis) Glyco_trans_4_2 PF13477.6 gi|327309940|ref|YP_004336837.1| - 0.014 15.4 0.0 0.043 13.9 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|327309940|ref|YP_004336837.1| - 0.052 13.9 0.0 0.095 13.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Methyltransf_21 PF05050.12 gi|327309941|ref|YP_004336838.1| - 1.2e-11 44.9 1.0 1.1e-09 38.6 1.0 2.1 1 1 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|327309941|ref|YP_004336838.1| - 6.8e-08 32.5 0.8 6.4e-06 26.0 0.8 2.3 1 1 0 1 1 1 1 Met-10+ like-protein Endonuc-BsobI PF09194.10 gi|327309941|ref|YP_004336838.1| - 0.028 13.6 0.4 0.039 13.1 0.4 1.2 1 0 0 1 1 1 0 Restriction endonuclease BsobI Peptidase_M11 PF05548.11 gi|327309941|ref|YP_004336838.1| - 0.061 12.5 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 Gametolysin peptidase M11 HicA_toxin PF07927.12 gi|327309941|ref|YP_004336838.1| - 0.083 12.9 0.0 0.37 10.9 0.0 2.0 2 0 0 2 2 2 0 HicA toxin of bacterial toxin-antitoxin, Glyco_transf_4 PF13439.6 gi|327309942|ref|YP_004336839.1| - 2.1e-25 89.6 5.0 3.7e-25 88.9 5.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|327309942|ref|YP_004336839.1| - 4.1e-23 81.8 0.0 6.3e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|327309942|ref|YP_004336839.1| - 1.2e-18 68.1 1.2 2.2e-18 67.2 0.5 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|327309942|ref|YP_004336839.1| - 1.4e-17 64.3 0.0 6.1e-17 62.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|327309942|ref|YP_004336839.1| - 1.1e-06 29.0 0.0 2e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|327309942|ref|YP_004336839.1| - 0.00012 22.1 0.2 0.0003 20.8 0.2 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|327309942|ref|YP_004336839.1| - 0.01 15.5 3.9 0.14 11.8 3.2 2.2 1 1 1 2 2 2 0 Starch synthase catalytic domain Glycos_transf_2 PF00535.26 gi|327309943|ref|YP_004336840.1| - 1.1e-34 119.7 0.0 1.6e-34 119.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|327309943|ref|YP_004336840.1| - 6.5e-26 91.6 0.0 1.1e-25 90.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|327309943|ref|YP_004336840.1| - 6.3e-14 51.8 0.0 1.2e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|327309943|ref|YP_004336840.1| - 5.1e-13 49.4 1.1 8.7e-13 48.6 1.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 NTP_transf_3 PF12804.7 gi|327309943|ref|YP_004336840.1| - 0.00023 21.5 1.7 0.00023 21.5 1.7 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_2 PF10111.9 gi|327309943|ref|YP_004336840.1| - 0.0006 19.4 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|327309943|ref|YP_004336840.1| - 0.00062 20.2 0.0 0.0013 19.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 YAcAr PF10686.9 gi|327309943|ref|YP_004336840.1| - 0.078 12.9 0.0 0.34 10.9 0.0 2.0 2 0 0 2 2 2 0 YspA, cpYpsA-related SLOG family Glycos_transf_2 PF00535.26 gi|327309944|ref|YP_004336841.1| - 1e-15 57.9 0.0 1.5e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|327309944|ref|YP_004336841.1| - 2.4e-07 30.9 0.0 3.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|327309944|ref|YP_004336841.1| - 0.0079 15.7 0.4 0.048 13.1 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 21 CofC PF01983.16 gi|327309944|ref|YP_004336841.1| - 0.098 11.8 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like DUF413 PF04219.12 gi|327309944|ref|YP_004336841.1| - 0.21 11.6 0.0 0.41 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF DUF1616 PF07760.11 gi|327309946|ref|YP_004336843.1| - 3.7e-15 56.1 0.0 8.1e-15 55.0 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) DUF202 PF02656.15 gi|327309946|ref|YP_004336843.1| - 0.83 10.1 8.8 0.39 11.2 2.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF58 PF01882.18 gi|327309947|ref|YP_004336844.1| - 6.4e-12 45.6 0.3 1.7e-11 44.3 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 Bac_DNA_binding PF00216.21 gi|327309947|ref|YP_004336844.1| - 0.069 13.4 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial DNA-binding protein AAA_3 PF07726.11 gi|327309948|ref|YP_004336845.1| - 2.3e-38 131.0 0.0 3.4e-38 130.5 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|327309948|ref|YP_004336845.1| - 3.5e-17 62.7 0.0 8.6e-17 61.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_lid_2 PF17863.1 gi|327309948|ref|YP_004336845.1| - 9.5e-17 60.6 1.4 2.8e-16 59.1 0.8 2.1 1 1 1 2 2 2 1 AAA lid domain Mg_chelatase PF01078.21 gi|327309948|ref|YP_004336845.1| - 1.4e-09 37.7 0.3 0.00076 18.9 0.3 2.5 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|327309948|ref|YP_004336845.1| - 1.4e-06 28.8 0.1 4.6e-06 27.1 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|327309948|ref|YP_004336845.1| - 0.00044 20.0 0.0 0.0017 18.1 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|327309948|ref|YP_004336845.1| - 0.00075 19.9 0.5 0.0016 18.9 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|327309948|ref|YP_004336845.1| - 0.0016 18.2 0.3 0.0065 16.2 0.3 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|327309948|ref|YP_004336845.1| - 0.0017 18.3 0.2 0.0036 17.3 0.2 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|327309948|ref|YP_004336845.1| - 0.0023 18.2 0.1 0.0057 16.9 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|327309948|ref|YP_004336845.1| - 0.0045 17.1 0.1 0.014 15.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_PrkA PF08298.11 gi|327309948|ref|YP_004336845.1| - 0.0052 15.7 0.0 0.36 9.7 0.0 2.1 2 0 0 2 2 2 1 PrkA AAA domain AAA_23 PF13476.6 gi|327309948|ref|YP_004336845.1| - 0.0063 17.0 0.0 0.0086 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|327309948|ref|YP_004336845.1| - 0.0073 15.5 0.1 0.012 14.9 0.1 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain MCM_lid PF17855.1 gi|327309948|ref|YP_004336845.1| - 0.011 16.1 0.3 0.029 14.8 0.3 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain ABC_tran PF00005.27 gi|327309948|ref|YP_004336845.1| - 0.023 15.2 0.2 0.049 14.1 0.2 1.5 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|327309948|ref|YP_004336845.1| - 0.043 14.2 0.0 0.11 12.9 0.0 1.9 1 1 0 1 1 1 0 RNA helicase IstB_IS21 PF01695.17 gi|327309948|ref|YP_004336845.1| - 0.067 12.9 0.2 0.12 12.0 0.2 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein MCM PF00493.23 gi|327309948|ref|YP_004336845.1| - 0.083 12.0 0.0 0.45 9.6 0.0 1.9 1 1 0 1 1 1 0 MCM P-loop domain T2SSE PF00437.20 gi|327309948|ref|YP_004336845.1| - 0.086 11.9 0.1 0.16 11.0 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|327309948|ref|YP_004336845.1| - 0.1 12.5 0.3 0.24 11.3 0.3 1.6 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|327309948|ref|YP_004336845.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|327309948|ref|YP_004336845.1| - 0.1 13.1 0.1 0.22 12.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_8 PF12780.7 gi|327309948|ref|YP_004336845.1| - 0.13 11.6 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 AAA_21 PF13304.6 gi|327309948|ref|YP_004336845.1| - 0.15 11.8 0.2 0.22 11.3 0.2 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|327309948|ref|YP_004336845.1| - 0.18 12.0 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.17 gi|327309948|ref|YP_004336845.1| - 0.28 10.2 0.0 0.45 9.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF4129 PF13559.6 gi|327309950|ref|YP_004336847.1| - 1.6e-07 31.5 4.4 1.6e-07 31.5 4.4 2.4 2 1 1 3 3 3 1 Domain of unknown function (DUF4129) AI-2E_transport PF01594.16 gi|327309950|ref|YP_004336847.1| - 0.0085 15.3 0.1 0.014 14.6 0.1 1.3 1 0 0 1 1 1 1 AI-2E family transporter Big_3_5 PF16640.5 gi|327309950|ref|YP_004336847.1| - 0.014 15.6 12.9 0.05 13.8 0.2 3.1 3 1 0 3 3 3 0 Bacterial Ig-like domain (group 3) XPC-binding PF09280.11 gi|327309950|ref|YP_004336847.1| - 0.091 12.5 0.2 0.16 11.7 0.2 1.3 1 0 0 1 1 1 0 XPC-binding domain CarboxypepD_reg PF13620.6 gi|327309950|ref|YP_004336847.1| - 1.5 9.2 6.5 13 6.2 0.0 3.2 3 1 0 3 3 3 0 Carboxypeptidase regulatory-like domain DUF1616 PF07760.11 gi|327309953|ref|YP_004336850.1| - 5.9e-33 114.5 11.1 8.3e-33 114.0 11.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4395 PF14340.6 gi|327309953|ref|YP_004336850.1| - 1.5 9.1 9.8 19 5.6 9.7 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) Polysacc_synt PF01943.17 gi|327309954|ref|YP_004336851.1| - 2.6e-06 27.0 17.7 2.6e-06 27.0 17.7 4.0 2 2 0 3 3 3 2 Polysaccharide biosynthesis protein MS_channel PF00924.18 gi|327309954|ref|YP_004336851.1| - 1 8.8 3.3 3.8 7.0 3.3 2.0 1 0 0 1 1 1 0 Mechanosensitive ion channel PaREP1 PF05942.11 gi|327309955|ref|YP_004336852.1| - 2.3e-31 108.1 0.9 3.4e-31 107.5 0.9 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Lactamase_B PF00753.27 gi|327309956|ref|YP_004336853.1| - 4.6e-20 72.5 6.1 7.2e-20 71.8 6.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|327309956|ref|YP_004336853.1| - 8.2e-07 28.7 0.1 2.2e-06 27.4 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain CopK PF11525.8 gi|327309956|ref|YP_004336853.1| - 0.073 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Copper resistance protein K AA_permease_2 PF13520.6 gi|327309957|ref|YP_004336854.1| - 2.2e-36 125.6 49.7 2.2e-36 125.6 49.7 2.1 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|327309957|ref|YP_004336854.1| - 3.6e-24 85.2 34.2 3.6e-24 85.2 34.2 2.7 2 1 1 3 3 3 1 Amino acid permease BLOC1_2 PF10046.9 gi|327309958|ref|YP_004336855.1| - 8.2e-05 22.8 1.7 0.00017 21.8 1.6 1.7 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|327309958|ref|YP_004336855.1| - 0.00046 20.3 0.8 0.031 14.5 0.1 2.6 1 1 1 2 2 2 1 Haemolysin XhlA UPF0102 PF02021.17 gi|327309958|ref|YP_004336855.1| - 0.0008 19.6 0.4 0.0021 18.2 0.4 1.8 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 CENP-F_leu_zip PF10473.9 gi|327309958|ref|YP_004336855.1| - 0.002 18.1 4.3 0.0027 17.8 4.3 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Dynamitin PF04912.14 gi|327309958|ref|YP_004336855.1| - 0.0023 17.3 1.3 0.003 16.9 1.3 1.1 1 0 0 1 1 1 1 Dynamitin ADIP PF11559.8 gi|327309958|ref|YP_004336855.1| - 0.003 17.6 0.5 0.0051 16.9 0.5 1.4 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Baculo_PEP_C PF04513.12 gi|327309958|ref|YP_004336855.1| - 0.0033 17.5 0.5 0.014 15.5 0.4 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus HBM PF16591.5 gi|327309958|ref|YP_004336855.1| - 0.004 16.6 1.2 0.007 15.8 1.2 1.3 1 0 0 1 1 1 1 Helical bimodular sensor domain bZIP_1 PF00170.21 gi|327309958|ref|YP_004336855.1| - 0.01 15.9 0.2 0.046 13.8 0.1 2.1 1 1 1 2 2 2 0 bZIP transcription factor Sipho_Gp157 PF05565.11 gi|327309958|ref|YP_004336855.1| - 0.011 15.7 1.6 0.015 15.3 1.6 1.3 1 0 0 1 1 1 0 Siphovirus Gp157 DivIC PF04977.15 gi|327309958|ref|YP_004336855.1| - 0.012 15.4 0.7 0.036 13.8 0.1 2.2 1 1 1 2 2 2 0 Septum formation initiator DUF4143 PF13635.6 gi|327309958|ref|YP_004336855.1| - 0.013 15.7 0.2 0.019 15.1 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4143) PDDEXK_10 PF07788.11 gi|327309958|ref|YP_004336855.1| - 0.015 15.2 0.1 0.015 15.2 0.1 1.8 2 0 0 2 2 1 0 PD-(D/E)XK nuclease superfamily DUF4407 PF14362.6 gi|327309958|ref|YP_004336855.1| - 0.015 14.6 1.2 0.017 14.5 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ATPgrasp_YheCD PF14398.6 gi|327309958|ref|YP_004336855.1| - 0.016 14.4 0.3 0.19 11.0 0.0 2.1 2 0 0 2 2 2 0 YheC/D like ATP-grasp DUF4618 PF15397.6 gi|327309958|ref|YP_004336855.1| - 0.017 14.5 0.4 0.025 14.0 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) RmuC PF02646.16 gi|327309958|ref|YP_004336855.1| - 0.02 14.0 1.6 0.027 13.6 1.2 1.4 1 1 0 1 1 1 0 RmuC family Cast PF10174.9 gi|327309958|ref|YP_004336855.1| - 0.02 13.1 1.5 0.06 11.6 1.5 1.6 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone DUF1690 PF07956.11 gi|327309958|ref|YP_004336855.1| - 0.021 15.2 2.5 0.034 14.6 2.5 1.4 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) GCN5L1 PF06320.13 gi|327309958|ref|YP_004336855.1| - 0.022 14.9 1.8 0.04 14.0 1.8 1.4 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) DUF1664 PF07889.12 gi|327309958|ref|YP_004336855.1| - 0.023 14.7 0.9 0.023 14.7 0.9 1.7 2 0 0 2 2 1 0 Protein of unknown function (DUF1664) Filament PF00038.21 gi|327309958|ref|YP_004336855.1| - 0.024 14.2 1.6 0.033 13.8 1.6 1.2 1 0 0 1 1 1 0 Intermediate filament protein NERD PF08378.11 gi|327309958|ref|YP_004336855.1| - 0.027 14.9 0.2 0.092 13.2 0.1 1.9 2 1 0 2 2 1 0 Nuclease-related domain Troponin PF00992.20 gi|327309958|ref|YP_004336855.1| - 0.028 14.7 4.7 2.4 8.4 2.5 2.2 2 0 0 2 2 2 0 Troponin Jnk-SapK_ap_N PF09744.9 gi|327309958|ref|YP_004336855.1| - 0.032 14.5 3.9 0.046 13.9 3.9 1.3 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Spc7 PF08317.11 gi|327309958|ref|YP_004336855.1| - 0.035 13.0 4.4 0.039 12.8 3.6 1.4 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF4988 PF16378.5 gi|327309958|ref|YP_004336855.1| - 0.04 13.6 0.1 0.097 12.3 0.0 1.7 2 0 0 2 2 1 0 Domain of unknown function DUF4795 PF16043.5 gi|327309958|ref|YP_004336855.1| - 0.044 13.4 0.8 0.097 12.3 0.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Phage_GPO PF05929.11 gi|327309958|ref|YP_004336855.1| - 0.046 13.3 2.4 0.064 12.9 2.4 1.1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase RRN3 PF05327.11 gi|327309958|ref|YP_004336855.1| - 0.05 12.2 0.5 0.065 11.8 0.5 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 DUF3883 PF13020.6 gi|327309958|ref|YP_004336855.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) CdvA PF18822.1 gi|327309958|ref|YP_004336855.1| - 0.059 13.2 1.5 0.8 9.5 0.7 2.2 1 1 1 2 2 2 0 CdvA-like coiled-coil domain DUF1319 PF07028.11 gi|327309958|ref|YP_004336855.1| - 0.061 13.5 0.1 0.12 12.6 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) AAA_13 PF13166.6 gi|327309958|ref|YP_004336855.1| - 0.065 11.9 2.0 0.073 11.7 2.0 1.1 1 0 0 1 1 1 0 AAA domain ATG16 PF08614.11 gi|327309958|ref|YP_004336855.1| - 0.069 13.4 3.9 0.11 12.7 3.9 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF4515 PF14988.6 gi|327309958|ref|YP_004336855.1| - 0.082 12.7 1.3 0.12 12.2 1.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4515) FlaC_arch PF05377.11 gi|327309958|ref|YP_004336855.1| - 0.085 13.3 0.7 0.19 12.1 0.1 2.0 2 0 0 2 2 1 0 Flagella accessory protein C (FlaC) Octopine_DH PF02317.17 gi|327309958|ref|YP_004336855.1| - 0.088 12.9 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TPR_MLP1_2 PF07926.12 gi|327309958|ref|YP_004336855.1| - 0.091 12.8 6.0 0.11 12.6 4.8 1.8 2 0 0 2 2 1 0 TPR/MLP1/MLP2-like protein FH2 PF02181.23 gi|327309958|ref|YP_004336855.1| - 0.096 11.8 0.6 0.13 11.4 0.6 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain Fmp27_WPPW PF10359.9 gi|327309958|ref|YP_004336855.1| - 0.096 11.5 0.3 0.11 11.3 0.3 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Prominin PF05478.11 gi|327309958|ref|YP_004336855.1| - 0.11 10.4 0.4 0.13 10.2 0.4 1.1 1 0 0 1 1 1 0 Prominin TMF_DNA_bd PF12329.8 gi|327309958|ref|YP_004336855.1| - 0.11 12.5 0.4 0.11 12.5 0.4 1.8 2 0 0 2 2 1 0 TATA element modulatory factor 1 DNA binding GAS PF13851.6 gi|327309958|ref|YP_004336855.1| - 0.13 11.6 1.9 0.18 11.1 1.9 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Phage_GP20 PF06810.11 gi|327309958|ref|YP_004336855.1| - 0.15 11.8 2.8 0.38 10.5 1.2 2.0 1 1 1 2 2 2 0 Phage minor structural protein GP20 T2SSF PF00482.23 gi|327309958|ref|YP_004336855.1| - 0.17 11.8 1.0 0.37 10.8 0.6 1.8 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F Spectrin PF00435.21 gi|327309958|ref|YP_004336855.1| - 0.2 12.2 2.2 0.73 10.4 2.2 2.0 1 1 0 1 1 1 0 Spectrin repeat Cas_Cas2CT1978 PF09707.10 gi|327309958|ref|YP_004336855.1| - 0.2 11.7 1.5 4.8 7.3 0.2 2.9 2 1 1 3 3 3 0 CRISPR-associated protein (Cas_Cas2CT1978) SlyX PF04102.12 gi|327309958|ref|YP_004336855.1| - 0.24 12.0 0.6 1.5 9.5 0.1 2.4 1 1 2 3 3 3 0 SlyX PspA_IM30 PF04012.12 gi|327309958|ref|YP_004336855.1| - 0.25 10.9 9.1 0.31 10.6 8.2 1.6 1 1 1 2 2 2 0 PspA/IM30 family Seryl_tRNA_N PF02403.22 gi|327309958|ref|YP_004336855.1| - 0.26 11.5 6.5 2.1 8.6 2.7 2.9 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF5327 PF17261.2 gi|327309958|ref|YP_004336855.1| - 0.28 11.9 1.1 0.58 10.9 1.1 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5327) APG6_N PF17675.1 gi|327309958|ref|YP_004336855.1| - 0.42 11.1 3.0 0.78 10.3 2.9 1.5 1 1 0 1 1 1 0 Apg6 coiled-coil region Uso1_p115_C PF04871.13 gi|327309958|ref|YP_004336855.1| - 0.69 10.3 5.1 8.5 6.8 5.1 2.2 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Prefoldin_2 PF01920.20 gi|327309958|ref|YP_004336855.1| - 0.88 9.6 6.3 0.65 10.0 2.6 2.4 2 1 0 2 2 1 0 Prefoldin subunit Syntaxin-6_N PF09177.11 gi|327309958|ref|YP_004336855.1| - 1.2 9.7 5.3 8.7 7.0 5.3 2.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal PSK_trans_fac PF07704.11 gi|327309958|ref|YP_004336855.1| - 5.5 7.8 16.5 7.1e+02 1.1 16.5 3.2 1 1 0 1 1 1 0 Rv0623-like transcription factor HEPN PF05168.14 gi|327309959|ref|YP_004336856.1| - 4.1e-28 97.9 0.7 4.6e-28 97.7 0.7 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|327309959|ref|YP_004336856.1| - 0.026 14.4 3.6 0.036 14.0 3.6 1.5 1 1 0 1 1 1 0 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.6 gi|327309959|ref|YP_004336856.1| - 1.1 9.9 9.7 0.12 13.0 3.3 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4398) Polbeta PF18765.1 gi|327309960|ref|YP_004336857.1| - 2.4e-07 30.7 0.0 3e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|327309960|ref|YP_004336857.1| - 7.3e-07 29.4 0.0 8.7e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain MdcG PF10620.9 gi|327309960|ref|YP_004336857.1| - 8.5e-05 22.4 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG DUF2204 PF09970.9 gi|327309960|ref|YP_004336857.1| - 0.14 11.8 0.0 0.18 11.4 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) PaREP1 PF05942.11 gi|327309961|ref|YP_004336858.1| - 7.2e-32 109.7 5.9 1.2e-31 109.0 5.9 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Sel1 PF08238.12 gi|327309961|ref|YP_004336858.1| - 0.021 15.5 0.1 0.059 14.1 0.1 1.8 1 0 0 1 1 1 0 Sel1 repeat TPR_16 PF13432.6 gi|327309961|ref|YP_004336858.1| - 0.82 10.4 7.4 4.1 8.1 5.0 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat MazE_antitoxin PF04014.18 gi|327309962|ref|YP_004336859.1| - 5.9e-09 35.6 0.1 9e-09 35.1 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Lactamase_B_2 PF12706.7 gi|327309963|ref|YP_004336860.1| - 1.7e-24 86.5 0.3 2e-24 86.2 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|327309963|ref|YP_004336860.1| - 1.9e-12 47.6 0.9 4.4e-12 46.4 0.9 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|327309963|ref|YP_004336860.1| - 0.0026 17.7 0.0 0.0059 16.5 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ABC_tran PF00005.27 gi|327309964|ref|YP_004336861.1| - 1.6e-34 119.4 0.0 2e-34 119.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327309964|ref|YP_004336861.1| - 4e-10 40.0 0.6 0.00092 19.1 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|327309964|ref|YP_004336861.1| - 1.6e-08 34.6 0.1 7e-08 32.5 0.0 2.1 2 0 0 2 2 2 1 TOBE domain SMC_N PF02463.19 gi|327309964|ref|YP_004336861.1| - 6.6e-05 22.5 0.0 0.088 12.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|327309964|ref|YP_004336861.1| - 0.00038 20.9 0.1 0.00077 19.9 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|327309964|ref|YP_004336861.1| - 0.0033 17.4 1.4 0.015 15.3 0.1 2.3 2 1 0 2 2 2 1 NACHT domain DLIC PF05783.11 gi|327309964|ref|YP_004336861.1| - 0.0062 15.4 0.0 0.0092 14.9 0.0 1.1 1 0 0 1 1 1 1 Dynein light intermediate chain (DLIC) AAA PF00004.29 gi|327309964|ref|YP_004336861.1| - 0.0075 16.7 0.1 0.062 13.7 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|327309964|ref|YP_004336861.1| - 0.0094 15.7 0.0 0.041 13.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|327309964|ref|YP_004336861.1| - 0.013 15.6 0.0 0.036 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|327309964|ref|YP_004336861.1| - 0.014 15.2 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|327309964|ref|YP_004336861.1| - 0.017 15.4 0.1 0.11 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|327309964|ref|YP_004336861.1| - 0.025 15.1 0.1 0.055 14.0 0.0 1.5 2 0 0 2 2 1 0 AAA domain T2SSE PF00437.20 gi|327309964|ref|YP_004336861.1| - 0.032 13.3 0.0 0.058 12.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|327309964|ref|YP_004336861.1| - 0.033 13.8 0.0 0.06 12.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|327309964|ref|YP_004336861.1| - 0.037 14.3 0.1 0.13 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|327309964|ref|YP_004336861.1| - 0.037 13.9 0.0 0.069 13.1 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|327309964|ref|YP_004336861.1| - 0.041 13.3 0.0 0.19 11.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|327309964|ref|YP_004336861.1| - 0.049 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|327309964|ref|YP_004336861.1| - 0.051 14.1 0.1 0.086 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|327309964|ref|YP_004336861.1| - 0.06 13.4 0.0 0.73 9.8 0.0 2.4 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) DUF148 PF02520.17 gi|327309964|ref|YP_004336861.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF148 AAA_25 PF13481.6 gi|327309964|ref|YP_004336861.1| - 0.13 11.8 0.1 6 6.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|327309964|ref|YP_004336861.1| - 0.16 11.9 0.0 0.35 10.8 0.0 1.4 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|327309964|ref|YP_004336861.1| - 0.18 11.5 0.0 0.43 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|327309964|ref|YP_004336861.1| - 0.19 10.3 0.0 1 7.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|327309964|ref|YP_004336861.1| - 0.2 10.8 0.0 0.83 8.8 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain Cytidylate_kin PF02224.18 gi|327309964|ref|YP_004336861.1| - 0.48 10.1 2.0 5.1 6.8 0.1 2.6 2 1 1 3 3 3 0 Cytidylate kinase BPD_transp_1 PF00528.22 gi|327309965|ref|YP_004336862.1| - 7.8e-18 64.9 47.5 8.1e-10 38.7 16.6 3.1 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|327309966|ref|YP_004336863.1| - 4.7e-28 99.0 1.7 1.1e-27 97.8 1.7 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|327309966|ref|YP_004336863.1| - 6.9e-25 88.4 0.9 1.1e-24 87.8 0.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|327309966|ref|YP_004336863.1| - 0.0027 17.5 0.1 0.52 10.0 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein Pilin_N PF07790.11 gi|327309966|ref|YP_004336863.1| - 0.006 17.5 1.4 0.018 16.0 1.4 1.7 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF929 PF06053.11 gi|327309966|ref|YP_004336863.1| - 0.014 14.7 1.0 0.028 13.7 1.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF929) DUF4307 PF14155.6 gi|327309966|ref|YP_004336863.1| - 0.08 12.8 0.8 0.17 11.7 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) EphA2_TM PF14575.6 gi|327309966|ref|YP_004336863.1| - 0.16 12.9 0.1 0.34 11.8 0.1 1.5 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain DUF2771 PF10969.8 gi|327309966|ref|YP_004336863.1| - 0.69 9.9 4.4 0.61 10.1 3.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2771) Fer4 PF00037.27 gi|327309967|ref|YP_004336864.1| - 2.2e-25 87.4 34.2 1.5e-08 34.1 0.9 5.5 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327309967|ref|YP_004336864.1| - 1.3e-19 70.5 27.2 1.7e-08 34.9 9.3 4.0 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327309967|ref|YP_004336864.1| - 3.7e-17 61.6 42.9 1.2e-06 28.4 0.8 5.8 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327309967|ref|YP_004336864.1| - 7.8e-15 55.6 25.7 5.5e-05 24.0 0.8 4.8 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|327309967|ref|YP_004336864.1| - 1.6e-12 47.3 32.2 6.8e-07 29.4 10.7 4.2 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327309967|ref|YP_004336864.1| - 2.7e-12 46.6 37.3 1.9e-06 27.9 11.0 4.4 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327309967|ref|YP_004336864.1| - 3.1e-12 45.8 41.7 0.0001 22.2 2.8 5.7 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327309967|ref|YP_004336864.1| - 1.2e-11 44.6 26.7 1.8e-07 31.2 7.2 3.6 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|327309967|ref|YP_004336864.1| - 4.9e-08 33.4 42.2 0.015 16.2 3.8 5.1 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|327309967|ref|YP_004336864.1| - 2.9e-07 30.8 29.2 0.0088 16.5 0.5 4.8 4 2 1 5 5 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327309967|ref|YP_004336864.1| - 3.6e-05 24.2 32.7 0.11 13.0 0.1 5.3 3 2 3 6 6 6 3 4Fe-4S dicluster domain Zn-ribbon_8 PF09723.10 gi|327309967|ref|YP_004336864.1| - 0.0034 17.5 0.1 0.0034 17.5 0.1 4.5 5 2 0 5 5 3 1 Zinc ribbon domain Fer4_4 PF12800.7 gi|327309967|ref|YP_004336864.1| - 0.0055 17.1 56.2 0.0077 16.7 3.8 6.0 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_13 PF13370.6 gi|327309967|ref|YP_004336864.1| - 0.0066 17.0 28.4 0.59 10.7 2.3 5.5 5 0 0 5 5 5 3 4Fe-4S single cluster domain of Ferredoxin I DUF3268 PF11672.8 gi|327309967|ref|YP_004336864.1| - 0.051 13.9 0.3 0.42 11.0 0.1 2.5 2 0 0 2 2 2 0 zinc-finger-containing domain Fer4_22 PF17179.4 gi|327309967|ref|YP_004336864.1| - 0.074 13.9 0.6 0.074 13.9 0.6 4.9 5 1 3 8 8 5 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|327309967|ref|YP_004336864.1| - 0.37 11.6 23.8 0.43 11.4 0.3 4.9 3 1 1 4 4 4 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|327309967|ref|YP_004336864.1| - 1.4 9.1 26.3 1.4 9.1 1.5 4.3 2 2 1 3 3 3 0 4Fe-4S dicluster domain Ribosomal_L37ae PF01780.19 gi|327309967|ref|YP_004336864.1| - 2.4 8.3 5.2 0.91 9.6 0.1 2.9 4 0 0 4 4 4 0 Ribosomal L37ae protein family SCO1-SenC PF02630.14 gi|327309967|ref|YP_004336864.1| - 2.6 8.0 4.4 3.9 7.4 0.3 3.0 4 0 0 4 4 4 0 SCO1/SenC zf-C2H2_11 PF16622.5 gi|327309967|ref|YP_004336864.1| - 3 7.7 28.7 1.8 8.4 2.4 5.3 5 0 0 5 5 5 0 zinc-finger C2H2-type Nitrate_red_del PF02613.15 gi|327309968|ref|YP_004336865.1| - 5.5e-15 55.6 0.1 8.5e-15 55.0 0.1 1.5 1 1 0 1 1 1 1 Nitrate reductase delta subunit Fer4_11 PF13247.6 gi|327309969|ref|YP_004336866.1| - 1.6e-20 73.1 6.5 1.6e-20 73.1 6.5 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327309969|ref|YP_004336866.1| - 7.3e-15 55.3 19.5 1.4e-06 28.8 5.9 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|327309969|ref|YP_004336866.1| - 3.6e-12 45.6 28.2 6.6e-07 28.9 5.4 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|327309969|ref|YP_004336866.1| - 7.4e-11 42.1 17.1 1.2e-05 25.4 4.9 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327309969|ref|YP_004336866.1| - 1.5e-10 40.7 30.9 8.3e-06 25.7 4.7 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|327309969|ref|YP_004336866.1| - 3.6e-09 36.6 25.7 8.5e-06 25.8 12.6 3.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327309969|ref|YP_004336866.1| - 2.4e-07 30.4 33.4 6.4e-05 22.8 3.5 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|327309969|ref|YP_004336866.1| - 1.1e-06 28.6 32.3 0.0027 18.1 3.5 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|327309969|ref|YP_004336866.1| - 1.8e-06 28.5 33.5 0.066 14.2 3.8 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327309969|ref|YP_004336866.1| - 3.8e-06 27.7 21.4 0.049 14.6 5.2 4.2 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|327309969|ref|YP_004336866.1| - 0.0012 18.9 8.8 0.0012 18.9 8.8 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|327309969|ref|YP_004336866.1| - 0.0088 16.5 28.2 1.4 9.4 7.1 3.8 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327309969|ref|YP_004336866.1| - 0.011 16.2 24.0 0.9 10.1 7.4 4.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|327309969|ref|YP_004336866.1| - 0.058 13.5 7.5 0.15 12.2 4.8 2.6 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Molydop_binding PF01568.21 gi|327309970|ref|YP_004336867.1| - 2.3e-17 63.0 0.1 1.5e-16 60.4 0.0 2.4 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|327309970|ref|YP_004336867.1| - 8.5e-06 25.4 2.1 1.6e-05 24.6 2.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|327309970|ref|YP_004336867.1| - 0.0094 15.3 0.7 0.021 14.2 0.7 1.5 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Molybdopterin PF00384.22 gi|327309970|ref|YP_004336867.1| - 0.12 11.3 0.0 5.9 5.7 0.0 3.0 3 1 0 3 3 3 0 Molybdopterin oxidoreductase NrfD PF03916.14 gi|327309971|ref|YP_004336868.1| - 9.3e-22 78.1 37.6 1.7e-21 77.2 37.4 1.5 1 1 0 1 1 1 1 Polysulphide reductase, NrfD TMEM223 PF14640.6 gi|327309971|ref|YP_004336868.1| - 0.093 12.9 1.0 0.22 11.7 1.0 1.6 1 0 0 1 1 1 0 Transmembrane protein 223 Presenilin PF01080.17 gi|327309971|ref|YP_004336868.1| - 1.4 7.6 12.7 2.2 7.0 12.7 1.2 1 0 0 1 1 1 0 Presenilin FliG_M PF14841.6 gi|327309972|ref|YP_004336869.1| - 0.0075 16.5 0.0 0.015 15.6 0.0 1.4 1 0 0 1 1 1 1 FliG middle domain Cyanate_lyase PF02560.14 gi|327309972|ref|YP_004336869.1| - 0.07 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 Cyanate lyase C-terminal domain Lactamase_B PF00753.27 gi|327309974|ref|YP_004336871.1| - 4.3e-18 66.1 3.1 1.1e-17 64.7 3.1 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|327309974|ref|YP_004336871.1| - 0.018 14.5 0.1 0.028 13.9 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain MazE_antitoxin PF04014.18 gi|327309975|ref|YP_004336872.1| - 1e-15 57.2 0.4 1.5e-15 56.7 0.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|327309975|ref|YP_004336872.1| - 1.7e-05 25.2 0.0 2.8e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF2118 PF09891.9 gi|327309975|ref|YP_004336872.1| - 0.0007 19.6 0.1 0.00078 19.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) DUF1905 PF08922.11 gi|327309975|ref|YP_004336872.1| - 0.049 13.7 0.1 0.083 13.0 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) PIN PF01850.21 gi|327309976|ref|YP_004336873.1| - 4.1e-14 53.1 0.3 4.7e-14 52.9 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_9 PF18477.1 gi|327309976|ref|YP_004336873.1| - 0.0024 18.2 0.0 0.011 16.1 0.0 1.9 1 1 0 1 1 1 1 PIN like domain DUF608 PF04685.13 gi|327309977|ref|YP_004336874.1| - 9.4e-48 163.2 0.0 9.3e-47 159.9 0.0 2.0 1 1 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|327309977|ref|YP_004336874.1| - 1.2e-20 74.2 0.0 2.2e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term Bac_rhamnosid6H PF17389.2 gi|327309977|ref|YP_004336874.1| - 0.0013 18.1 0.0 0.0063 15.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain PaREP1 PF05942.11 gi|327309978|ref|YP_004336875.1| - 1.2e-29 102.6 0.5 1.2e-29 102.6 0.5 2.0 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family FAD_binding_3 PF01494.19 gi|327309978|ref|YP_004336875.1| - 0.13 11.5 0.0 0.15 11.2 0.0 1.3 1 1 0 1 1 1 0 FAD binding domain OrfB_Zn_ribbon PF07282.11 gi|327309981|ref|YP_004336878.1| - 1.5e-10 40.8 0.1 2.9e-10 39.9 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|327309981|ref|YP_004336878.1| - 2.5e-05 24.3 4.0 5.5e-05 23.2 4.0 1.6 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.6 gi|327309981|ref|YP_004336878.1| - 0.0045 16.3 0.1 1.4 8.3 0.0 2.4 2 0 0 2 2 2 2 Transcription factor zinc-finger Prok-RING_1 PF14446.6 gi|327309981|ref|YP_004336878.1| - 0.0056 16.6 0.8 0.0097 15.8 0.8 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF1272 PF06906.11 gi|327309981|ref|YP_004336878.1| - 0.0085 16.2 0.3 0.12 12.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1272) RPA_interact_C PF14768.6 gi|327309981|ref|YP_004336878.1| - 0.028 15.0 0.1 0.05 14.2 0.1 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zinc-ribbons_6 PF07191.12 gi|327309981|ref|YP_004336878.1| - 0.085 12.8 0.2 0.15 12.0 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbons TRM PF02005.16 gi|327309981|ref|YP_004336878.1| - 0.086 12.0 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Zn-ribbon_8 PF09723.10 gi|327309981|ref|YP_004336878.1| - 0.093 12.9 3.1 2.2 8.5 0.1 3.1 2 1 1 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|327309981|ref|YP_004336878.1| - 0.098 12.7 0.3 0.18 11.9 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|327309981|ref|YP_004336878.1| - 0.16 11.4 1.1 9 5.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|327309981|ref|YP_004336878.1| - 0.19 11.5 2.4 1 9.2 0.3 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger PHD PF00628.29 gi|327309981|ref|YP_004336878.1| - 0.2 11.6 0.5 0.33 10.9 0.5 1.3 1 0 0 1 1 1 0 PHD-finger zinc_ribbon_9 PF14369.6 gi|327309981|ref|YP_004336878.1| - 0.27 11.5 2.1 1.9 8.8 0.1 2.4 1 1 1 2 2 2 0 zinc-ribbon zf-FPG_IleRS PF06827.14 gi|327309981|ref|YP_004336878.1| - 1.2 9.1 6.7 3.9 7.4 6.7 1.9 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.11 gi|327309981|ref|YP_004336878.1| - 7.1 6.4 6.5 1e+02 2.7 6.5 2.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain ATPase PF06745.13 gi|327309982|ref|YP_004336879.1| - 3.8e-15 55.9 0.0 4.8e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|327309982|ref|YP_004336879.1| - 9.2e-10 38.4 0.0 1.7e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain Elong_Iki1 PF10483.9 gi|327309982|ref|YP_004336879.1| - 1.6e-05 24.5 0.0 2e-05 24.2 0.0 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 DnaB_C PF03796.15 gi|327309982|ref|YP_004336879.1| - 0.0011 18.4 0.0 0.0032 16.8 0.0 1.8 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|327309982|ref|YP_004336879.1| - 0.0083 15.9 0.1 0.023 14.4 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein PhoH PF02562.16 gi|327309982|ref|YP_004336879.1| - 0.025 14.0 0.5 0.072 12.5 0.1 2.0 2 1 0 2 2 2 0 PhoH-like protein TsaE PF02367.17 gi|327309982|ref|YP_004336879.1| - 0.029 14.4 0.0 0.087 12.8 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|327309982|ref|YP_004336879.1| - 0.056 13.9 0.1 0.18 12.2 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|327309982|ref|YP_004336879.1| - 0.057 13.3 0.0 0.2 11.6 0.0 1.9 2 1 1 3 3 3 0 NACHT domain Sigma54_activat PF00158.26 gi|327309982|ref|YP_004336879.1| - 0.058 13.1 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain CbiA PF01656.23 gi|327309982|ref|YP_004336879.1| - 0.077 13.1 0.0 0.16 12.0 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Ago_N_1 PF18351.1 gi|327309982|ref|YP_004336879.1| - 0.11 13.0 0.0 0.43 11.0 0.0 1.9 2 0 0 2 2 2 0 Fungal Argonaute N-terminal domain AAA_18 PF13238.6 gi|327309982|ref|YP_004336879.1| - 0.12 12.9 0.0 1.6 9.3 0.0 2.2 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.21 gi|327309983|ref|YP_004336880.1| - 5.4e-16 59.4 0.0 4.1e-15 56.5 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|327309983|ref|YP_004336880.1| - 9.4e-07 28.8 0.2 0.037 13.8 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) DUF4851 PF16143.5 gi|327309983|ref|YP_004336880.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4851) adh_short_C2 PF13561.6 gi|327309984|ref|YP_004336881.1| - 1.3e-69 234.3 0.0 1.7e-69 233.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|327309984|ref|YP_004336881.1| - 2.4e-54 183.8 0.0 3.3e-54 183.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|327309984|ref|YP_004336881.1| - 5.4e-10 39.5 0.0 9.6e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|327309984|ref|YP_004336881.1| - 0.00095 18.7 0.1 0.0018 17.8 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family PaREP1 PF05942.11 gi|327309986|ref|YP_004336883.1| - 5.2e-22 78.0 0.3 6.2e-22 77.7 0.3 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family tRNA-synt_1 PF00133.22 gi|327309987|ref|YP_004336884.1| - 9.2e-60 202.5 0.0 1.1e-50 172.6 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|327309987|ref|YP_004336884.1| - 2.9e-27 95.4 0.3 6.7e-13 48.1 0.3 3.2 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|327309987|ref|YP_004336884.1| - 2.5e-15 56.7 0.6 6e-15 55.5 0.6 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|327309987|ref|YP_004336884.1| - 1e-11 44.7 0.0 1.9e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|327309987|ref|YP_004336884.1| - 1.6e-10 40.8 0.0 8.1e-06 25.4 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain TatC PF00902.18 gi|327309988|ref|YP_004336885.1| - 3.1e-38 131.7 22.3 3.9e-38 131.4 22.3 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) HEPN PF05168.14 gi|327309989|ref|YP_004336886.1| - 2.1e-27 95.6 0.0 2.3e-27 95.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|327309990|ref|YP_004336887.1| - 6.1e-09 36.1 0.0 8.5e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327309990|ref|YP_004336887.1| - 3.9e-07 30.1 0.0 4.8e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase ABC2_membrane PF01061.24 gi|327309992|ref|YP_004336889.1| - 1.5e-29 102.9 20.4 1.5e-29 102.9 20.4 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|327309992|ref|YP_004336889.1| - 1.5e-12 47.3 14.0 1.5e-12 47.3 14.0 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|327309992|ref|YP_004336889.1| - 0.0028 17.0 14.7 0.0069 15.7 14.7 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein SLATT_3 PF18184.1 gi|327309992|ref|YP_004336889.1| - 0.07 13.3 0.2 0.16 12.1 0.2 1.6 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 ABC2_membrane_4 PF12730.7 gi|327309992|ref|YP_004336889.1| - 0.41 10.6 12.2 0.017 15.1 5.9 1.9 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|327309993|ref|YP_004336890.1| - 5.5e-27 95.0 0.0 7.8e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327309993|ref|YP_004336890.1| - 1.3e-13 51.5 0.7 9.9e-08 32.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|327309993|ref|YP_004336890.1| - 1.1e-09 38.8 0.1 2.7e-09 37.6 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|327309993|ref|YP_004336890.1| - 0.0082 16.7 0.0 0.013 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|327309993|ref|YP_004336890.1| - 0.051 13.5 0.0 0.076 12.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 gi|327309993|ref|YP_004336890.1| - 0.058 13.1 0.0 5.6 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|327309993|ref|YP_004336890.1| - 0.075 12.4 0.0 0.19 11.1 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|327309993|ref|YP_004336890.1| - 0.088 13.2 1.2 1.3 9.4 1.2 2.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|327309993|ref|YP_004336890.1| - 0.1 12.2 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|327309993|ref|YP_004336890.1| - 0.14 11.9 0.4 0.28 10.9 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cation_efflux PF01545.21 gi|327309994|ref|YP_004336891.1| - 6.4e-27 94.6 12.7 7.6e-27 94.3 12.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|327309994|ref|YP_004336891.1| - 5e-21 74.6 0.3 7.7e-21 74.0 0.3 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter RHSP PF07999.11 gi|327309994|ref|YP_004336891.1| - 0.017 14.0 0.0 0.029 13.2 0.0 1.3 1 0 0 1 1 1 0 Retrotransposon hot spot protein CinA_KH PF18146.1 gi|327309994|ref|YP_004336891.1| - 0.021 15.0 0.1 0.047 13.9 0.1 1.6 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain Cyclin_C PF02984.19 gi|327309994|ref|YP_004336891.1| - 1.6 8.8 3.1 1.9 8.6 0.0 2.4 3 0 0 3 3 3 0 Cyclin, C-terminal domain MFS_1 PF07690.16 gi|327309996|ref|YP_004336893.1| - 1.6e-32 112.8 61.1 3.7e-20 72.1 30.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily NUDIX PF00293.28 gi|327309997|ref|YP_004336894.1| - 1.3e-15 57.6 0.9 1.9e-15 57.1 0.5 1.5 1 1 1 2 2 2 1 NUDIX domain Thi4 PF01946.17 gi|327309998|ref|YP_004336895.1| - 3.2e-75 252.4 0.0 4e-75 252.1 0.0 1.1 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|327309998|ref|YP_004336895.1| - 8.6e-14 51.9 0.7 6.6e-08 32.5 0.2 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|327309998|ref|YP_004336895.1| - 2.6e-08 34.0 0.2 7.2e-08 32.6 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|327309998|ref|YP_004336895.1| - 2.6e-08 33.4 3.5 5.9e-07 28.9 0.5 2.8 2 1 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 gi|327309998|ref|YP_004336895.1| - 2.7e-08 33.4 0.0 4.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|327309998|ref|YP_004336895.1| - 9e-07 28.4 0.0 1.5e-06 27.7 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|327309998|ref|YP_004336895.1| - 1.2e-06 28.2 0.1 1.8e-06 27.6 0.1 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|327309998|ref|YP_004336895.1| - 1.3e-05 24.1 0.5 2.2e-05 23.4 0.5 1.3 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.24 gi|327309998|ref|YP_004336895.1| - 6.1e-05 22.5 0.1 0.00011 21.6 0.1 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|327309998|ref|YP_004336895.1| - 0.00026 20.4 0.0 0.00049 19.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327309998|ref|YP_004336895.1| - 0.00077 20.0 0.2 0.00077 20.0 0.2 2.2 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|327309998|ref|YP_004336895.1| - 0.0039 16.3 0.2 0.009 15.1 0.0 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.22 gi|327309998|ref|YP_004336895.1| - 0.0073 15.4 0.3 0.012 14.7 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|327309998|ref|YP_004336895.1| - 0.011 15.8 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.6 gi|327309998|ref|YP_004336895.1| - 0.015 15.3 0.4 0.015 15.3 0.4 1.6 2 0 0 2 2 1 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|327309998|ref|YP_004336895.1| - 0.075 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|327309998|ref|YP_004336895.1| - 0.099 11.8 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|327309998|ref|YP_004336895.1| - 0.1 11.4 0.1 0.15 10.9 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase ADH_zinc_N PF00107.26 gi|327309999|ref|YP_004336896.1| - 3.8e-21 75.4 0.6 6.7e-21 74.6 0.6 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|327309999|ref|YP_004336896.1| - 3.2e-16 59.2 0.0 6.7e-16 58.1 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|327309999|ref|YP_004336896.1| - 8.3e-08 33.4 0.5 2e-07 32.1 0.2 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|327309999|ref|YP_004336896.1| - 3.3e-06 26.7 0.6 4.6e-06 26.3 0.6 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus 3HCDH_N PF02737.18 gi|327309999|ref|YP_004336896.1| - 0.033 14.1 0.5 0.05 13.5 0.5 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_31 PF13847.6 gi|327309999|ref|YP_004336896.1| - 0.036 13.9 0.0 0.12 12.2 0.0 1.9 2 1 0 2 2 2 0 Methyltransferase domain POR_N PF01855.19 gi|327310001|ref|YP_004336898.1| - 4.9e-57 193.3 0.3 8.1e-57 192.6 0.3 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|327310001|ref|YP_004336898.1| - 1.6e-29 103.2 0.7 4e-29 101.9 0.7 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_C PF02775.21 gi|327310002|ref|YP_004336899.1| - 2.4e-34 118.3 0.3 1e-33 116.3 0.2 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|327310002|ref|YP_004336899.1| - 2.7e-24 85.1 0.0 5.8e-24 84.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF4200 PF13863.6 gi|327310003|ref|YP_004336900.1| - 0.02 15.3 9.5 0.02 15.3 9.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF4143 PF13635.6 gi|327310003|ref|YP_004336900.1| - 0.03 14.5 0.1 0.055 13.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Exonuc_VII_L PF02601.15 gi|327310003|ref|YP_004336900.1| - 0.15 11.6 1.9 0.2 11.2 1.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit NERD PF08378.11 gi|327310003|ref|YP_004336900.1| - 0.19 12.2 0.2 0.19 12.2 0.2 2.9 1 1 1 2 2 2 0 Nuclease-related domain GBP_C PF02841.14 gi|327310003|ref|YP_004336900.1| - 5.2 6.4 9.4 7.3 5.9 9.4 1.2 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Ribonuc_red_lgC PF02867.15 gi|327310003|ref|YP_004336900.1| - 6.7 5.1 6.8 10 4.5 6.8 1.3 1 0 0 1 1 1 0 Ribonucleotide reductase, barrel domain Helicase_RecD PF05127.14 gi|327310004|ref|YP_004336901.1| - 1.7e-54 184.4 0.0 2.7e-54 183.7 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|327310004|ref|YP_004336901.1| - 5e-40 137.3 0.0 1.4e-26 93.3 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|327310004|ref|YP_004336901.1| - 3.6e-31 107.0 0.0 1.3e-30 105.2 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|327310004|ref|YP_004336901.1| - 0.00029 21.1 0.0 0.00086 19.5 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family TniB PF05621.11 gi|327310004|ref|YP_004336901.1| - 0.11 11.9 0.1 0.2 11.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial TniB protein AA_permease PF00324.21 gi|327310005|ref|YP_004336902.1| - 2.9e-21 75.6 45.8 5.4e-20 71.4 45.8 2.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|327310005|ref|YP_004336902.1| - 1.1e-17 64.0 48.8 1.5e-17 63.6 48.8 1.2 1 0 0 1 1 1 1 Amino acid permease Holin_BlyA PF05102.12 gi|327310005|ref|YP_004336902.1| - 5.9 6.9 5.7 0.81 9.7 0.5 2.2 2 0 0 2 2 2 0 holin, BlyA family DAO PF01266.24 gi|327310007|ref|YP_004336904.1| - 2.4e-35 122.8 5.7 2.9e-35 122.5 5.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|327310007|ref|YP_004336904.1| - 1.3e-05 24.6 0.4 0.0055 16.0 0.3 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327310007|ref|YP_004336904.1| - 1.7e-05 24.9 1.1 4.5e-05 23.6 1.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|327310007|ref|YP_004336904.1| - 1.8e-05 24.0 1.5 2.2e-05 23.7 1.5 1.4 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|327310007|ref|YP_004336904.1| - 0.0011 18.2 0.4 0.0019 17.5 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|327310007|ref|YP_004336904.1| - 0.0015 18.2 0.0 0.0025 17.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|327310007|ref|YP_004336904.1| - 0.0017 18.9 0.4 0.0036 17.8 0.4 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|327310007|ref|YP_004336904.1| - 0.0088 15.4 0.7 0.0088 15.4 0.7 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|327310007|ref|YP_004336904.1| - 0.01 15.2 0.7 0.018 14.4 0.7 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|327310007|ref|YP_004336904.1| - 0.012 14.4 0.2 0.021 13.6 0.2 1.4 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_7 PF13241.6 gi|327310007|ref|YP_004336904.1| - 0.015 15.7 0.1 0.034 14.6 0.1 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|327310007|ref|YP_004336904.1| - 0.038 13.0 1.0 3.5 6.6 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.22 gi|327310007|ref|YP_004336904.1| - 0.06 12.4 0.3 0.06 12.4 0.3 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|327310007|ref|YP_004336904.1| - 0.11 12.1 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Helicase_C_2 PF13307.6 gi|327310008|ref|YP_004336905.1| - 2.6e-24 86.3 0.0 4.7e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|327310008|ref|YP_004336905.1| - 2.4e-15 56.6 0.0 5.3e-15 55.5 0.0 1.6 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|327310008|ref|YP_004336905.1| - 6.6e-08 32.5 0.0 3.2e-06 27.0 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|327310008|ref|YP_004336905.1| - 8.1e-06 25.9 0.0 8.3e-05 22.6 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|327310008|ref|YP_004336905.1| - 0.017 14.7 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|327310008|ref|YP_004336905.1| - 0.027 13.9 0.1 0.052 13.0 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.6 gi|327310008|ref|YP_004336905.1| - 0.05 13.9 0.0 9.8 6.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain PRIMA1 PF16101.5 gi|327310008|ref|YP_004336905.1| - 0.064 13.3 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 Terminase_6 PF03237.15 gi|327310008|ref|YP_004336905.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Terminase-like family DUF5336 PF17270.2 gi|327310009|ref|YP_004336906.1| - 8.4e-05 22.3 0.3 8.4e-05 22.3 0.3 2.0 2 0 0 2 2 2 1 Family of unknown function (DUF5336) MotA_ExbB PF01618.16 gi|327310009|ref|YP_004336906.1| - 0.0099 15.6 1.9 0.014 15.2 1.9 1.1 1 0 0 1 1 1 1 MotA/TolQ/ExbB proton channel family DUF973 PF06157.11 gi|327310009|ref|YP_004336906.1| - 0.24 10.4 0.9 0.34 9.9 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Topoisom_bac PF01131.20 gi|327310010|ref|YP_004336907.1| - 8.6e-107 357.7 0.0 1e-106 357.4 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|327310010|ref|YP_004336907.1| - 2.1e-15 56.8 0.0 7.7e-15 55.0 0.0 1.9 2 0 0 2 2 2 1 Toprim domain SPOR PF05036.13 gi|327310010|ref|YP_004336907.1| - 0.021 15.2 0.2 0.064 13.6 0.2 1.8 1 0 0 1 1 1 0 Sporulation related domain CdvA PF18822.1 gi|327310010|ref|YP_004336907.1| - 0.1 12.4 0.3 0.24 11.2 0.3 1.6 1 0 0 1 1 1 0 CdvA-like coiled-coil domain Diphthamide_syn PF01866.17 gi|327310011|ref|YP_004336908.1| - 1.7e-17 63.8 0.0 1.3e-11 44.5 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein DUF87 PF01935.17 gi|327310013|ref|YP_004336910.1| - 1e-35 123.9 0.0 1.5e-35 123.3 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain T4SS-DNA_transf PF02534.14 gi|327310013|ref|YP_004336910.1| - 0.00041 19.3 0.0 0.00073 18.4 0.0 1.3 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_10 PF12846.7 gi|327310013|ref|YP_004336910.1| - 0.0012 17.8 0.0 0.039 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain HAS-barrel PF09378.10 gi|327310013|ref|YP_004336910.1| - 0.002 18.2 1.0 0.0047 17.1 1.0 1.6 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|327310013|ref|YP_004336910.1| - 0.0092 14.9 0.0 0.045 12.7 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|327310013|ref|YP_004336910.1| - 0.044 14.0 0.0 2.2 8.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain Zot PF05707.12 gi|327310013|ref|YP_004336910.1| - 0.051 13.2 0.0 0.09 12.4 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Helicase_RecD PF05127.14 gi|327310013|ref|YP_004336910.1| - 0.065 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Helicase ResIII PF04851.15 gi|327310013|ref|YP_004336910.1| - 0.15 12.1 0.0 0.32 11.0 0.0 1.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ATPase_2 PF01637.18 gi|327310014|ref|YP_004336911.1| - 4.6e-56 190.3 0.0 5.8e-56 190.0 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|327310014|ref|YP_004336911.1| - 0.00027 21.2 0.0 0.00054 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327310014|ref|YP_004336911.1| - 0.00097 19.6 0.2 0.0035 17.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain B12-binding PF02310.19 gi|327310014|ref|YP_004336911.1| - 0.0041 17.1 0.2 0.013 15.6 0.0 1.9 3 0 0 3 3 3 1 B12 binding domain AAA_33 PF13671.6 gi|327310014|ref|YP_004336911.1| - 0.0048 17.1 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|327310014|ref|YP_004336911.1| - 0.014 15.8 0.0 0.026 15.0 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_23 PF13384.6 gi|327310014|ref|YP_004336911.1| - 0.015 15.1 0.2 2.4 8.1 0.2 3.1 2 1 0 2 2 2 0 Homeodomain-like domain MobB PF03205.14 gi|327310014|ref|YP_004336911.1| - 0.02 14.8 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.6 gi|327310014|ref|YP_004336911.1| - 0.037 13.7 0.1 0.076 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|327310014|ref|YP_004336911.1| - 0.044 13.5 0.0 0.063 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF853 PF05872.12 gi|327310014|ref|YP_004336911.1| - 0.072 11.7 0.0 0.19 10.3 0.0 1.6 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF853) RNA_helicase PF00910.22 gi|327310014|ref|YP_004336911.1| - 0.24 11.8 0.0 0.4 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase HTH_28 PF13518.6 gi|327310014|ref|YP_004336911.1| - 4.7 7.4 6.0 1.8 8.8 0.1 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain 2-Hacid_dh_C PF02826.19 gi|327310015|ref|YP_004336912.1| - 3.4e-35 121.0 0.0 6.2e-35 120.2 0.0 1.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|327310015|ref|YP_004336912.1| - 9e-14 51.3 0.0 1.1e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|327310015|ref|YP_004336912.1| - 0.00029 21.0 0.0 0.00059 20.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|327310015|ref|YP_004336912.1| - 0.008 16.3 0.2 0.23 11.5 0.2 2.2 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|327310015|ref|YP_004336912.1| - 0.0094 15.9 0.1 0.062 13.3 0.1 2.0 1 1 1 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.21 gi|327310015|ref|YP_004336912.1| - 0.049 13.0 2.2 0.2 11.0 1.0 2.0 1 1 1 2 2 2 0 ThiF family ApbA PF02558.16 gi|327310015|ref|YP_004336912.1| - 0.081 12.6 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|327310015|ref|YP_004336912.1| - 0.17 11.2 6.7 0.19 11.0 0.4 2.8 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|327310015|ref|YP_004336912.1| - 0.18 11.8 0.2 0.57 10.2 0.1 2.0 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ELFV_dehydrog PF00208.21 gi|327310016|ref|YP_004336913.1| - 1.5e-63 214.8 0.0 1.9e-63 214.4 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|327310016|ref|YP_004336913.1| - 6e-49 165.2 0.0 1.2e-48 164.3 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|327310016|ref|YP_004336913.1| - 0.0013 18.2 0.2 0.0025 17.2 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|327310016|ref|YP_004336913.1| - 0.025 13.8 0.0 0.034 13.4 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|327310016|ref|YP_004336913.1| - 0.092 13.2 0.0 0.21 12.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding MCM PF00493.23 gi|327310017|ref|YP_004336914.1| - 2.9e-101 337.3 0.0 4e-101 336.8 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|327310017|ref|YP_004336914.1| - 1.7e-38 131.3 0.0 3.8e-38 130.2 0.0 1.5 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|327310017|ref|YP_004336914.1| - 1.1e-26 93.0 2.2 1.1e-26 93.0 2.2 2.1 2 0 0 2 2 2 1 MCM AAA-lid domain MCM_N PF14551.6 gi|327310017|ref|YP_004336914.1| - 1.4e-12 48.1 1.0 4.7e-12 46.4 0.5 2.1 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|327310017|ref|YP_004336914.1| - 3e-08 33.3 0.1 4.2e-06 26.3 0.0 2.4 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|327310017|ref|YP_004336914.1| - 5.9e-07 29.4 0.1 2.8e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.10 gi|327310017|ref|YP_004336914.1| - 2.8e-05 24.1 1.4 5.2e-05 23.3 1.4 1.4 1 0 0 1 1 1 1 Zinc ribbon domain AAA_5 PF07728.14 gi|327310017|ref|YP_004336914.1| - 3.2e-05 23.9 0.0 0.00014 21.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|327310017|ref|YP_004336914.1| - 0.0014 18.4 0.2 0.0084 15.8 0.2 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain HypA PF01155.19 gi|327310017|ref|YP_004336914.1| - 0.014 15.4 0.2 0.034 14.2 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_16 PF13191.6 gi|327310017|ref|YP_004336914.1| - 0.018 15.4 1.1 0.067 13.6 0.0 2.5 3 1 0 3 3 3 0 AAA ATPase domain AAA_30 PF13604.6 gi|327310017|ref|YP_004336914.1| - 0.024 14.3 2.0 0.061 13.0 2.0 1.6 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|327310017|ref|YP_004336914.1| - 0.04 12.9 0.3 0.94 8.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) T2SS-T3SS_pil_N PF13629.6 gi|327310017|ref|YP_004336914.1| - 0.042 13.6 1.8 1 9.1 0.1 2.6 2 0 0 2 2 2 0 Pilus formation protein N terminal region AAA PF00004.29 gi|327310017|ref|YP_004336914.1| - 0.058 13.8 0.0 0.23 11.9 0.0 2.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zn_ribbon_SprT PF17283.2 gi|327310017|ref|YP_004336914.1| - 0.065 13.2 1.0 0.15 12.0 1.0 1.6 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|327310017|ref|YP_004336914.1| - 0.07 13.2 0.5 0.12 12.4 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|327310017|ref|YP_004336914.1| - 0.2 11.5 2.1 9 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|327310017|ref|YP_004336914.1| - 1.9 8.3 4.7 4.1 7.2 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Sld5 PF05916.11 gi|327310018|ref|YP_004336915.1| - 7.2e-06 26.4 0.1 1.1e-05 25.9 0.1 1.3 1 0 0 1 1 1 1 GINS complex protein ParB_C PF18064.1 gi|327310018|ref|YP_004336915.1| - 0.18 12.0 0.0 0.36 11.0 0.0 1.5 1 0 0 1 1 1 0 Centromere-binding protein ParB C-terminal CBS PF00571.28 gi|327310019|ref|YP_004336916.1| - 3.8e-25 88.1 1.2 3.4e-12 46.6 0.1 2.1 2 0 0 2 2 2 2 CBS domain TmoB PF06234.12 gi|327310019|ref|YP_004336916.1| - 0.00093 19.2 1.5 0.81 9.8 0.3 2.1 1 1 0 2 2 2 2 Toluene-4-monooxygenase system protein B (TmoB) DNA_RNApol_7kD PF03604.13 gi|327310020|ref|YP_004336917.1| - 0.049 13.3 0.2 0.071 12.8 0.2 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DEAD PF00270.29 gi|327310021|ref|YP_004336918.1| - 8.4e-20 71.3 0.0 1.7e-19 70.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|327310021|ref|YP_004336918.1| - 2.4e-11 44.1 0.0 2.4e-11 44.1 0.0 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|327310021|ref|YP_004336918.1| - 6.1e-10 39.4 0.0 4.4e-09 36.7 0.0 2.1 1 1 0 1 1 1 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|327310021|ref|YP_004336918.1| - 2.3e-05 24.1 0.1 7.8e-05 22.4 0.1 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.23 gi|327310021|ref|YP_004336918.1| - 0.00042 19.1 0.0 0.00059 18.7 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain HHH_2 PF12826.7 gi|327310021|ref|YP_004336918.1| - 0.0008 19.5 0.1 0.0036 17.4 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif DUF2267 PF10025.9 gi|327310021|ref|YP_004336918.1| - 3.6 7.9 6.5 0.87 9.9 0.7 2.8 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2267) HTH_45 PF14947.6 gi|327310022|ref|YP_004336919.1| - 5.8e-13 48.6 0.0 6.2e-13 48.5 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.7 gi|327310022|ref|YP_004336919.1| - 0.00052 19.9 0.1 0.00068 19.5 0.1 1.2 1 0 0 1 1 1 1 MarR family AAA_assoc_C PF09821.9 gi|327310022|ref|YP_004336919.1| - 0.0011 19.5 0.0 0.0013 19.3 0.0 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain TrmB PF01978.19 gi|327310022|ref|YP_004336919.1| - 0.0014 18.5 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|327310022|ref|YP_004336919.1| - 0.0049 16.9 0.1 0.006 16.6 0.1 1.2 1 0 0 1 1 1 1 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|327310022|ref|YP_004336919.1| - 0.0094 15.9 0.1 0.015 15.2 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|327310022|ref|YP_004336919.1| - 0.013 15.3 0.2 0.019 14.8 0.2 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|327310022|ref|YP_004336919.1| - 0.014 15.3 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|327310022|ref|YP_004336919.1| - 0.042 14.2 0.0 0.043 14.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator FtsK_gamma PF09397.10 gi|327310022|ref|YP_004336919.1| - 0.046 13.5 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 Ftsk gamma domain Oxidored_q2 PF00420.24 gi|327310023|ref|YP_004336920.1| - 3.2 7.4 14.2 9.2 6.0 1.2 2.9 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4307 PF14155.6 gi|327310024|ref|YP_004336921.1| - 0.032 14.1 0.7 0.074 12.9 0.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF4405 PF14358.6 gi|327310025|ref|YP_004336922.1| - 1.2 9.8 4.3 1.5 9.5 4.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4405) PDT PF00800.18 gi|327310026|ref|YP_004336923.1| - 1.3e-24 87.0 0.0 1.8e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|327310026|ref|YP_004336923.1| - 4.4e-07 29.6 0.0 9.4e-07 28.5 0.0 1.6 1 0 0 1 1 1 1 ACT domain DeoC PF01791.9 gi|327310026|ref|YP_004336923.1| - 0.12 12.0 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 DeoC/LacD family aldolase PaREP1 PF05942.11 gi|327310028|ref|YP_004336925.1| - 4.5e-26 91.0 2.3 5.8e-26 90.7 2.3 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|327310028|ref|YP_004336925.1| - 0.32 11.1 6.7 7.6 6.7 4.3 2.2 2 0 0 2 2 2 0 HEPN domain AAA_14 PF13173.6 gi|327310029|ref|YP_004336926.1| - 1.9e-06 27.9 0.0 4.1e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|327310029|ref|YP_004336926.1| - 7e-06 26.1 0.0 0.00035 20.6 0.0 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|327310029|ref|YP_004336926.1| - 1e-05 26.0 1.0 0.0006 20.2 1.0 2.7 1 1 0 1 1 1 1 AAA ATPase domain DUF234 PF03008.14 gi|327310029|ref|YP_004336926.1| - 0.00055 20.3 0.0 0.0011 19.4 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function IBR PF01485.21 gi|327310030|ref|YP_004336927.1| - 0.86 9.9 6.8 0.47 10.7 4.7 1.6 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain AAA_15 PF13175.6 gi|327310031|ref|YP_004336928.1| - 9.7e-13 48.6 0.0 1.6e-05 24.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|327310031|ref|YP_004336928.1| - 2.1e-07 31.1 0.0 0.00011 22.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|327310031|ref|YP_004336928.1| - 0.00017 22.2 0.0 0.00023 21.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|327310031|ref|YP_004336928.1| - 0.011 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4200 PF13863.6 gi|327310032|ref|YP_004336929.1| - 0.61 10.5 19.2 3.9 7.9 13.7 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) Exonuc_VII_L PF02601.15 gi|327310032|ref|YP_004336929.1| - 1.3 8.6 10.1 0.46 10.0 1.6 2.3 2 1 0 2 2 2 0 Exonuclease VII, large subunit DUF1910 PF08928.10 gi|327310032|ref|YP_004336929.1| - 7.2 6.6 12.6 13 5.8 3.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) PaREP1 PF05942.11 gi|327310033|ref|YP_004336930.1| - 5.1e-26 90.9 0.0 6.5e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4258 PF14076.6 gi|327310036|ref|YP_004336933.1| - 0.18 12.2 1.4 0.21 12.0 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) Polbeta PF18765.1 gi|327310038|ref|YP_004336935.1| - 5.7e-08 32.7 0.0 9e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase UPF0102 PF02021.17 gi|327310039|ref|YP_004336936.1| - 0.00062 19.9 0.3 0.0015 18.7 0.3 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 NERD PF08378.11 gi|327310039|ref|YP_004336936.1| - 0.01 16.3 0.1 0.027 14.9 0.1 1.8 1 1 0 1 1 1 0 Nuclease-related domain PDDEXK_10 PF07788.11 gi|327310039|ref|YP_004336936.1| - 0.013 15.4 0.2 0.013 15.4 0.2 1.7 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily ATPgrasp_YheCD PF14398.6 gi|327310039|ref|YP_004336936.1| - 0.082 12.1 0.1 0.32 10.2 0.0 1.8 2 0 0 2 2 2 0 YheC/D like ATP-grasp CdvA PF18822.1 gi|327310039|ref|YP_004336936.1| - 0.11 12.3 0.7 0.17 11.7 0.7 1.3 1 0 0 1 1 1 0 CdvA-like coiled-coil domain PDDEXK_1 PF12705.7 gi|327310039|ref|YP_004336936.1| - 0.21 11.5 1.9 0.28 11.1 1.9 1.1 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PSK_trans_fac PF07704.11 gi|327310039|ref|YP_004336936.1| - 2 9.3 13.2 0.18 12.6 3.7 2.8 1 1 1 2 2 2 0 Rv0623-like transcription factor Nre_N PF04894.12 gi|327310041|ref|YP_004336938.1| - 3.8e-94 315.5 0.0 4.6e-94 315.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|327310041|ref|YP_004336938.1| - 3e-36 123.7 0.0 5e-36 123.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal ATPase PF06745.13 gi|327310042|ref|YP_004336939.1| - 3.2e-16 59.4 0.0 2.3e-14 53.3 0.0 2.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|327310042|ref|YP_004336939.1| - 4.3e-09 36.2 0.2 2.2e-08 33.9 0.2 2.1 2 0 0 2 2 2 1 AAA domain GvpD PF07088.11 gi|327310042|ref|YP_004336939.1| - 6.7e-09 34.9 0.0 0.00075 18.2 0.0 2.2 1 1 0 2 2 2 2 GvpD gas vesicle protein NACHT PF05729.12 gi|327310042|ref|YP_004336939.1| - 1e-05 25.5 0.0 2.4e-05 24.3 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA PF00004.29 gi|327310042|ref|YP_004336939.1| - 1.4e-05 25.5 0.0 7.7e-05 23.1 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|327310042|ref|YP_004336939.1| - 0.00025 20.8 0.0 0.0006 19.6 0.0 1.6 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|327310042|ref|YP_004336939.1| - 0.00099 18.9 0.0 0.0019 18.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|327310042|ref|YP_004336939.1| - 0.0013 19.2 0.0 0.0031 17.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|327310042|ref|YP_004336939.1| - 0.0016 18.7 0.0 0.0034 17.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|327310042|ref|YP_004336939.1| - 0.0026 17.1 0.0 0.0047 16.3 0.0 1.4 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain ATPase_2 PF01637.18 gi|327310042|ref|YP_004336939.1| - 0.0094 15.9 0.0 0.014 15.3 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea CbiA PF01656.23 gi|327310042|ref|YP_004336939.1| - 0.013 15.6 0.0 0.024 14.7 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|327310042|ref|YP_004336939.1| - 0.017 14.9 0.0 0.029 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|327310042|ref|YP_004336939.1| - 0.02 15.3 0.0 0.028 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|327310042|ref|YP_004336939.1| - 0.02 14.9 0.0 0.051 13.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|327310042|ref|YP_004336939.1| - 0.021 15.2 0.0 0.037 14.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.12 gi|327310042|ref|YP_004336939.1| - 0.023 14.4 0.1 0.37 10.5 0.0 2.5 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|327310042|ref|YP_004336939.1| - 0.024 14.8 0.0 0.17 12.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|327310042|ref|YP_004336939.1| - 0.026 13.8 0.0 0.033 13.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|327310042|ref|YP_004336939.1| - 0.03 13.5 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|327310042|ref|YP_004336939.1| - 0.03 13.7 0.0 4.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI RecA PF00154.21 gi|327310042|ref|YP_004336939.1| - 0.043 13.3 0.0 0.069 12.6 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_18 PF13238.6 gi|327310042|ref|YP_004336939.1| - 0.061 13.9 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|327310042|ref|YP_004336939.1| - 0.071 12.5 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_13 PF13166.6 gi|327310042|ref|YP_004336939.1| - 0.091 11.4 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|327310042|ref|YP_004336939.1| - 0.098 12.3 0.0 0.25 11.0 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|327310042|ref|YP_004336939.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_31 PF13614.6 gi|327310042|ref|YP_004336939.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|327310042|ref|YP_004336939.1| - 0.19 11.5 0.0 0.28 10.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain CobA_CobO_BtuR PF02572.15 gi|327310042|ref|YP_004336939.1| - 0.19 12.0 0.0 0.78 10.0 0.0 2.1 2 1 0 2 2 2 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Radical_SAM PF04055.21 gi|327310043|ref|YP_004336940.1| - 6e-10 39.8 0.0 8.7e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|327310043|ref|YP_004336940.1| - 0.27 10.9 2.7 2.1 8.0 3.5 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) HAD_2 PF13419.6 gi|327310044|ref|YP_004336941.1| - 8.4e-20 71.6 0.0 1.3e-19 71.0 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|327310044|ref|YP_004336941.1| - 3e-11 43.2 0.0 4.7e-11 42.6 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|327310044|ref|YP_004336941.1| - 5.6e-11 43.1 0.1 1e-10 42.3 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|327310044|ref|YP_004336941.1| - 6.3e-05 23.5 0.4 0.0001 22.8 0.4 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase RHH_1 PF01402.21 gi|327310045|ref|YP_004336942.1| - 2e-05 24.3 0.7 2e-05 24.3 0.7 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_4 PF13467.6 gi|327310045|ref|YP_004336942.1| - 5e-05 23.1 0.1 6.6e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain IucA_IucC PF04183.12 gi|327310045|ref|YP_004336942.1| - 0.055 13.0 0.1 0.13 11.8 0.0 1.4 1 1 0 1 1 1 0 IucA / IucC family Terminase_2 PF03592.16 gi|327310045|ref|YP_004336942.1| - 0.093 13.2 0.1 0.1 13.1 0.1 1.1 1 0 0 1 1 1 0 Terminase small subunit MatP_C PF17414.2 gi|327310045|ref|YP_004336942.1| - 0.12 12.6 0.1 0.23 11.7 0.0 1.5 2 0 0 2 2 2 0 MatP C-terminal ribbon-helix-helix domain PIN PF01850.21 gi|327310046|ref|YP_004336943.1| - 3.7e-13 50.1 0.1 4.5e-13 49.8 0.1 1.1 1 0 0 1 1 1 1 PIN domain Glyco_hydro_38N PF01074.22 gi|327310047|ref|YP_004336944.1| - 2.9e-55 187.7 0.0 4e-55 187.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|327310047|ref|YP_004336944.1| - 1.5e-46 159.2 0.0 2.1e-46 158.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|327310047|ref|YP_004336944.1| - 1.8e-19 69.7 0.1 3.5e-19 68.8 0.1 1.5 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|327310047|ref|YP_004336944.1| - 3.9e-10 39.7 0.0 7.2e-10 38.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Amidohydro_1 PF01979.20 gi|327310048|ref|YP_004336945.1| - 5.5e-21 75.2 0.2 7.5e-21 74.8 0.2 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|327310048|ref|YP_004336945.1| - 1.3e-08 34.7 1.4 4.6e-05 23.1 0.1 2.9 2 1 1 3 3 3 2 Amidohydrolase family DUF608 PF04685.13 gi|327310049|ref|YP_004336946.1| - 1.7e-69 234.8 0.0 6.1e-68 229.6 0.0 2.1 1 1 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|327310049|ref|YP_004336946.1| - 5.7e-06 26.0 0.4 0.00023 20.8 0.4 2.6 1 1 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term MR_MLE_C PF13378.6 gi|327310050|ref|YP_004336947.1| - 1.4e-47 162.1 0.1 1.9e-47 161.7 0.1 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|327310050|ref|YP_004336947.1| - 9e-10 38.8 0.0 1.8e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FCD PF07729.12 gi|327310051|ref|YP_004336948.1| - 1.6e-19 70.5 2.2 2.2e-19 70.1 1.4 1.6 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 gi|327310051|ref|YP_004336948.1| - 1e-14 53.9 0.1 2.5e-14 52.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|327310051|ref|YP_004336948.1| - 0.0032 17.4 0.1 0.011 15.7 0.0 1.9 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|327310051|ref|YP_004336948.1| - 0.0055 16.2 0.0 0.025 14.2 0.0 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|327310051|ref|YP_004336948.1| - 0.019 15.4 0.0 0.056 13.9 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|327310051|ref|YP_004336948.1| - 0.037 13.9 0.0 0.097 12.5 0.0 1.8 1 1 0 1 1 1 0 TFIIE alpha subunit TrmB PF01978.19 gi|327310051|ref|YP_004336948.1| - 0.067 13.1 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GD_AH_C PF04295.13 gi|327310052|ref|YP_004336949.1| - 7.7e-120 400.3 0.0 8.6e-120 400.1 0.0 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus SAF PF08666.12 gi|327310053|ref|YP_004336950.1| - 5.7e-17 62.1 1.3 8.4e-17 61.6 1.3 1.3 1 0 0 1 1 1 1 SAF domain SET PF00856.28 gi|327310053|ref|YP_004336950.1| - 0.011 16.1 0.1 1.4 9.2 0.0 2.9 1 1 1 2 2 2 0 SET domain DUF2190 PF09956.9 gi|327310053|ref|YP_004336950.1| - 0.087 13.3 0.2 6.6 7.3 0.1 2.1 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2190) Aldedh PF00171.22 gi|327310054|ref|YP_004336951.1| - 3.9e-152 507.0 0.1 4.4e-152 506.8 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family adh_short_C2 PF13561.6 gi|327310055|ref|YP_004336952.1| - 1.7e-48 165.2 0.0 2.2e-48 164.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|327310055|ref|YP_004336952.1| - 2.1e-40 138.3 0.0 2.7e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|327310055|ref|YP_004336952.1| - 0.0002 21.3 0.2 0.00046 20.1 0.2 1.6 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|327310055|ref|YP_004336952.1| - 0.0016 18.0 0.2 0.0089 15.5 0.1 2.0 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family LDcluster4 PF18306.1 gi|327310055|ref|YP_004336952.1| - 0.0022 17.6 0.1 0.0044 16.6 0.1 1.4 1 0 0 1 1 1 1 SLOG cluster4 family 2-Hacid_dh_C PF02826.19 gi|327310055|ref|YP_004336952.1| - 0.007 15.7 0.1 0.014 14.7 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|327310055|ref|YP_004336952.1| - 0.013 15.5 0.1 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase SoPB_HTH PF18090.1 gi|327310055|ref|YP_004336952.1| - 0.029 14.5 0.1 0.2 11.8 0.1 2.1 2 0 0 2 2 2 0 Centromere-binding protein HTH domain Oxidored_nitro PF00148.19 gi|327310055|ref|YP_004336952.1| - 0.096 11.4 0.0 0.1 11.3 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase SGL PF08450.12 gi|327310056|ref|YP_004336953.1| - 1.2e-72 244.5 0.0 1.4e-72 244.3 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Arylesterase PF01731.20 gi|327310056|ref|YP_004336953.1| - 0.0055 16.9 0.0 0.015 15.5 0.0 1.7 1 0 0 1 1 1 1 Arylesterase Str_synth PF03088.16 gi|327310056|ref|YP_004336953.1| - 0.0077 16.3 0.0 0.098 12.8 0.0 2.5 3 0 0 3 3 3 1 Strictosidine synthase Reg_prop PF07494.11 gi|327310056|ref|YP_004336953.1| - 0.016 15.4 0.1 7.9 7.1 0.0 3.2 2 0 0 2 2 2 0 Two component regulator propeller Phytase-like PF13449.6 gi|327310056|ref|YP_004336953.1| - 0.16 11.8 0.0 0.55 10.1 0.0 1.7 2 0 0 2 2 2 0 Esterase-like activity of phytase NHL PF01436.21 gi|327310056|ref|YP_004336953.1| - 0.18 11.9 0.0 0.87 9.8 0.0 2.2 2 0 0 2 2 2 0 NHL repeat Phage_holin_3_6 PF07332.11 gi|327310057|ref|YP_004336954.1| - 0.088 12.9 2.7 0.098 12.7 2.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4133 PF13571.6 gi|327310057|ref|YP_004336954.1| - 0.19 12.1 2.6 0.22 11.9 2.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) DUF4083 PF13314.6 gi|327310057|ref|YP_004336954.1| - 0.44 10.5 4.2 7.4 6.6 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) FeoB_associated PF12669.7 gi|327310057|ref|YP_004336954.1| - 3.4 8.1 7.3 1.3 9.5 0.7 2.1 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein BPD_transp_1 PF00528.22 gi|327310058|ref|YP_004336955.1| - 1e-22 80.8 17.3 1e-22 80.8 17.3 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|327310058|ref|YP_004336955.1| - 3.7e-05 23.6 2.2 3.7e-05 23.6 2.2 2.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|327310059|ref|YP_004336956.1| - 7.3e-34 117.1 15.5 7.3e-34 117.1 15.5 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|327310060|ref|YP_004336957.1| - 7.6e-35 120.6 8.0 7.6e-35 120.6 8.0 1.8 2 1 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.12 gi|327310060|ref|YP_004336957.1| - 0.12 11.9 0.4 4.7 6.7 0.0 2.3 2 0 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system TrbC PF04956.13 gi|327310060|ref|YP_004336957.1| - 0.68 10.2 12.4 3.9 7.7 0.7 2.7 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF5305 PF17231.2 gi|327310060|ref|YP_004336957.1| - 1.9 7.9 5.0 3.1 7.2 5.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) ABC_tran PF00005.27 gi|327310062|ref|YP_004336959.1| - 5.6e-32 111.1 0.0 7.8e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|327310062|ref|YP_004336959.1| - 5.2e-05 23.7 0.0 9.4e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|327310062|ref|YP_004336959.1| - 0.0028 18.1 0.1 0.0042 17.5 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|327310062|ref|YP_004336959.1| - 0.0034 17.1 0.3 0.0075 16.0 0.3 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|327310062|ref|YP_004336959.1| - 0.0058 16.9 0.4 0.025 14.9 0.4 2.0 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|327310062|ref|YP_004336959.1| - 0.013 14.8 0.1 0.022 14.1 0.1 1.4 1 0 0 1 1 1 0 KaiC AAA_21 PF13304.6 gi|327310062|ref|YP_004336959.1| - 0.015 15.2 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|327310062|ref|YP_004336959.1| - 0.1 12.3 0.2 0.45 10.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|327310062|ref|YP_004336959.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|327310062|ref|YP_004336959.1| - 0.13 11.8 0.1 0.84 9.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|327310062|ref|YP_004336959.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|327310062|ref|YP_004336959.1| - 0.16 11.8 0.1 0.31 11.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|327310063|ref|YP_004336960.1| - 2.1e-28 99.5 0.0 2.9e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|327310063|ref|YP_004336960.1| - 2.8e-17 63.0 0.0 5.7e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|327310063|ref|YP_004336960.1| - 3.7e-12 46.7 0.7 3.5e-10 40.2 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|327310063|ref|YP_004336960.1| - 1.3e-05 24.8 0.0 2.4e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|327310063|ref|YP_004336960.1| - 4.1e-05 23.1 0.0 0.028 13.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|327310063|ref|YP_004336960.1| - 0.0002 21.8 0.1 0.00029 21.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain APS_kinase PF01583.20 gi|327310063|ref|YP_004336960.1| - 0.00044 20.2 0.0 0.00098 19.0 0.0 1.6 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_22 PF13401.6 gi|327310063|ref|YP_004336960.1| - 0.0018 18.6 0.3 0.015 15.6 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|327310063|ref|YP_004336960.1| - 0.0054 17.2 0.1 0.033 14.6 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|327310063|ref|YP_004336960.1| - 0.0098 15.3 0.1 0.36 10.2 0.1 2.1 2 0 0 2 2 2 1 Bacterial TniB protein PRK PF00485.18 gi|327310063|ref|YP_004336960.1| - 0.011 15.5 0.0 0.03 14.1 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|327310063|ref|YP_004336960.1| - 0.014 15.6 0.0 0.023 14.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|327310063|ref|YP_004336960.1| - 0.025 14.5 0.4 0.071 13.0 0.1 1.9 1 1 1 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|327310063|ref|YP_004336960.1| - 0.037 13.2 0.1 0.082 12.1 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|327310063|ref|YP_004336960.1| - 0.08 12.8 0.1 0.33 10.8 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase IstB_IS21 PF01695.17 gi|327310063|ref|YP_004336960.1| - 0.083 12.6 0.2 0.64 9.7 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|327310063|ref|YP_004336960.1| - 0.093 12.1 0.0 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|327310063|ref|YP_004336960.1| - 0.1 12.6 0.0 0.27 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|327310063|ref|YP_004336960.1| - 0.17 11.5 0.6 2 7.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|327310063|ref|YP_004336960.1| - 0.21 11.5 0.3 0.57 10.1 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_23 PF13476.6 gi|327310063|ref|YP_004336960.1| - 0.24 11.9 0.0 0.33 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|327310063|ref|YP_004336960.1| - 0.31 9.8 1.5 8.9 5.0 0.1 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Nop10p PF04135.12 gi|327310064|ref|YP_004336961.1| - 6e-23 80.6 2.3 7.9e-23 80.2 2.3 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|327310064|ref|YP_004336961.1| - 0.00011 22.0 1.6 0.00019 21.2 1.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 gi|327310064|ref|YP_004336961.1| - 0.00056 20.1 1.1 0.00085 19.5 1.1 1.3 1 0 0 1 1 1 1 Ribosomal L32p protein family zf-NADH-PPase PF09297.11 gi|327310064|ref|YP_004336961.1| - 0.0016 18.0 2.3 0.65 9.7 0.2 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|327310064|ref|YP_004336961.1| - 0.0027 17.6 0.2 0.0037 17.2 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbons DUF1272 PF06906.11 gi|327310064|ref|YP_004336961.1| - 0.012 15.7 1.9 0.015 15.4 1.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.6 gi|327310064|ref|YP_004336961.1| - 0.02 14.3 5.4 0.064 12.7 5.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|327310064|ref|YP_004336961.1| - 0.025 14.6 1.8 0.045 13.8 1.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon RecR PF02132.15 gi|327310064|ref|YP_004336961.1| - 0.032 13.8 0.2 0.044 13.4 0.2 1.2 1 0 0 1 1 1 0 RecR protein PolC_DP2 PF03833.13 gi|327310064|ref|YP_004336961.1| - 0.043 11.7 0.0 0.043 11.7 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn_ribbon_SprT PF17283.2 gi|327310064|ref|YP_004336961.1| - 0.045 13.7 1.9 0.073 13.0 1.9 1.3 1 0 0 1 1 1 0 SprT-like zinc ribbon domain Nudix_N_2 PF14803.6 gi|327310064|ref|YP_004336961.1| - 0.072 13.0 2.8 0.59 10.1 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|327310064|ref|YP_004336961.1| - 0.084 13.0 4.5 2.3 8.4 4.7 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-ACC PF17848.1 gi|327310064|ref|YP_004336961.1| - 0.087 12.9 6.4 1.8 8.7 6.5 2.2 1 1 1 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn_ribbon_recom PF13408.6 gi|327310064|ref|YP_004336961.1| - 0.097 13.2 2.3 1.5 9.4 0.0 2.1 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Auto_anti-p27 PF06677.12 gi|327310064|ref|YP_004336961.1| - 0.099 12.8 2.7 0.18 12.0 0.2 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) CpXC PF14353.6 gi|327310064|ref|YP_004336961.1| - 0.1 12.6 1.1 0.26 11.4 0.0 1.9 1 1 1 2 2 2 0 CpXC protein HypA PF01155.19 gi|327310064|ref|YP_004336961.1| - 0.17 11.9 0.9 0.25 11.4 0.5 1.4 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|327310064|ref|YP_004336961.1| - 0.28 11.0 5.6 2.1 8.2 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|327310064|ref|YP_004336961.1| - 0.36 11.3 5.6 1.6 9.2 1.0 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-tcix PF14952.6 gi|327310064|ref|YP_004336961.1| - 1.3 8.7 10.2 0.43 10.2 1.0 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf_C2H2_13 PF18508.1 gi|327310064|ref|YP_004336961.1| - 1.4 8.6 4.2 2.9 7.6 0.5 2.3 2 0 0 2 2 2 0 Zinc finger domain zf-TFIIB PF13453.6 gi|327310064|ref|YP_004336961.1| - 2.3 7.6 6.4 2 7.8 1.1 2.2 1 1 3 4 4 4 0 Transcription factor zinc-finger ADK_lid PF05191.14 gi|327310064|ref|YP_004336961.1| - 9.4 6.3 8.4 12 6.0 1.8 2.6 1 1 1 2 2 2 0 Adenylate kinase, active site lid EIF_2_alpha PF07541.12 gi|327310065|ref|YP_004336962.1| - 3e-21 75.7 0.1 8.2e-21 74.3 0.0 1.7 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|327310065|ref|YP_004336962.1| - 5e-05 23.6 0.7 5e-05 23.6 0.7 1.8 2 0 0 2 2 2 1 S1 RNA binding domain STT3 PF02516.14 gi|327310066|ref|YP_004336963.1| - 2.8e-27 95.8 48.2 4.1e-26 92.0 48.2 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Zn-ribbon_8 PF09723.10 gi|327310067|ref|YP_004336964.1| - 0.038 14.1 2.7 0.31 11.2 2.7 2.0 1 1 0 1 1 1 0 Zinc ribbon domain DUF2688 PF10892.8 gi|327310067|ref|YP_004336964.1| - 0.045 13.2 0.3 0.14 11.7 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) DNA_ligase_ZBD PF03119.16 gi|327310067|ref|YP_004336964.1| - 0.063 13.3 1.5 0.59 10.2 0.1 2.4 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|327310067|ref|YP_004336964.1| - 0.084 12.3 1.6 4.1 6.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|327310067|ref|YP_004336964.1| - 0.12 12.1 3.4 6 6.7 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF1610 PF07754.11 gi|327310067|ref|YP_004336964.1| - 0.68 10.0 4.9 2.5 8.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DHHA1 PF02272.19 gi|327310069|ref|YP_004336966.1| - 1.3e-05 25.6 0.7 0.00017 22.0 0.0 2.5 2 1 1 3 3 3 1 DHHA1 domain DUF3782 PF12644.7 gi|327310070|ref|YP_004336967.1| - 1e-22 80.0 0.7 4.5e-21 74.8 0.1 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|327310070|ref|YP_004336967.1| - 2.4e-19 69.0 0.8 5e-19 68.0 0.8 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF16 PF01519.16 gi|327310070|ref|YP_004336967.1| - 0.0002 21.8 0.1 0.019 15.4 0.0 2.3 1 1 2 3 3 3 1 Protein of unknown function DUF16 DASH_Spc19 PF08287.11 gi|327310070|ref|YP_004336967.1| - 0.00022 21.1 1.2 0.00064 19.6 0.9 2.0 2 1 0 2 2 1 1 Spc19 DUF1664 PF07889.12 gi|327310070|ref|YP_004336967.1| - 0.00023 21.2 2.7 0.025 14.6 0.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) SlyX PF04102.12 gi|327310070|ref|YP_004336967.1| - 0.00026 21.5 0.0 0.025 15.2 0.0 2.5 2 0 0 2 2 2 1 SlyX TMF_DNA_bd PF12329.8 gi|327310070|ref|YP_004336967.1| - 0.0015 18.4 0.2 0.011 15.7 0.1 2.3 1 1 1 2 2 2 1 TATA element modulatory factor 1 DNA binding Fib_alpha PF08702.10 gi|327310070|ref|YP_004336967.1| - 0.0023 18.1 0.1 1 9.5 0.0 2.2 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF812 PF05667.11 gi|327310070|ref|YP_004336967.1| - 0.018 14.0 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) FlaC_arch PF05377.11 gi|327310070|ref|YP_004336967.1| - 0.02 15.2 5.2 0.069 13.6 0.1 3.7 2 1 2 4 4 4 0 Flagella accessory protein C (FlaC) Csm1_N PF18504.1 gi|327310070|ref|YP_004336967.1| - 0.023 15.0 0.3 8.3 6.8 0.0 3.2 3 0 0 3 3 3 0 Csm1 N-terminal domain USP8_interact PF08941.10 gi|327310070|ref|YP_004336967.1| - 0.043 13.6 0.0 0.084 12.7 0.0 1.5 1 1 0 1 1 1 0 USP8 interacting DUF948 PF06103.11 gi|327310070|ref|YP_004336967.1| - 0.053 13.8 0.4 0.42 10.9 0.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) CALCOCO1 PF07888.11 gi|327310070|ref|YP_004336967.1| - 0.065 12.1 0.2 0.084 11.7 0.2 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Syntaxin-6_N PF09177.11 gi|327310070|ref|YP_004336967.1| - 0.071 13.7 0.4 0.14 12.7 0.4 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal ATG16 PF08614.11 gi|327310070|ref|YP_004336967.1| - 0.073 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) TFA2_Winged_2 PF18121.1 gi|327310070|ref|YP_004336967.1| - 0.074 12.8 0.1 0.69 9.7 0.1 2.3 1 1 0 1 1 1 0 TFA2 Winged helix domain 2 DUF4618 PF15397.6 gi|327310070|ref|YP_004336967.1| - 0.082 12.3 0.0 0.41 10.0 0.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) BLOC1_2 PF10046.9 gi|327310070|ref|YP_004336967.1| - 0.1 12.9 0.2 2.5 8.5 0.0 2.9 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Filament PF00038.21 gi|327310070|ref|YP_004336967.1| - 0.11 12.1 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 Intermediate filament protein Apolipoprotein PF01442.18 gi|327310070|ref|YP_004336967.1| - 0.11 12.3 1.0 0.38 10.6 1.1 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain COMP PF11598.8 gi|327310070|ref|YP_004336967.1| - 0.12 12.9 0.3 0.85 10.1 0.0 2.4 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein SYCE1 PF15233.6 gi|327310070|ref|YP_004336967.1| - 0.12 12.4 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 Spc29 PF17082.5 gi|327310070|ref|YP_004336967.1| - 0.2 11.5 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 Spindle Pole Component 29 bZIP_1 PF00170.21 gi|327310070|ref|YP_004336967.1| - 0.2 11.8 0.4 0.67 10.1 0.0 2.2 2 0 0 2 2 2 0 bZIP transcription factor Atg14 PF10186.9 gi|327310070|ref|YP_004336967.1| - 0.22 10.6 0.1 0.4 9.7 0.1 1.5 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 tRNA-synt_2c PF01411.19 gi|327310071|ref|YP_004336968.1| - 2.9e-119 399.1 0.0 3.8e-119 398.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|327310071|ref|YP_004336968.1| - 2.9e-13 49.7 0.2 6.2e-13 48.6 0.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|327310071|ref|YP_004336968.1| - 0.0006 20.2 0.3 0.0013 19.1 0.3 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|327310071|ref|YP_004336968.1| - 0.005 16.1 0.1 0.0088 15.3 0.1 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit HTH_31 PF13560.6 gi|327310071|ref|YP_004336968.1| - 0.028 14.8 0.1 1.8 9.0 0.0 3.2 2 0 0 2 2 2 0 Helix-turn-helix domain UBA_4 PF14555.6 gi|327310072|ref|YP_004336969.1| - 0.0013 18.5 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 UBA-like domain UBA PF00627.31 gi|327310072|ref|YP_004336969.1| - 0.0038 17.1 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 UBA/TS-N domain HOIP-UBA PF16678.5 gi|327310072|ref|YP_004336969.1| - 0.0047 16.9 1.5 0.0072 16.3 1.5 1.5 1 1 0 1 1 1 1 HOIP UBA domain pair SPT6_acidic PF14632.6 gi|327310072|ref|YP_004336969.1| - 0.05 14.2 0.1 0.079 13.6 0.1 1.3 1 0 0 1 1 1 0 Acidic N-terminal SPT6 YflT PF11181.8 gi|327310072|ref|YP_004336969.1| - 0.078 13.5 0.4 4.8 7.8 0.2 2.1 2 0 0 2 2 2 0 Heat induced stress protein YflT Ribosomal_L16 PF00252.18 gi|327310073|ref|YP_004336970.1| - 4.6e-34 117.3 0.0 5.5e-34 117.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF2192 PF09958.9 gi|327310074|ref|YP_004336971.1| - 3.7e-69 232.7 4.9 4.2e-69 232.6 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Esterase PF00756.20 gi|327310075|ref|YP_004336972.1| - 2e-09 37.5 0.0 2.5e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Peptidase_S9 PF00326.21 gi|327310075|ref|YP_004336972.1| - 7.1e-08 32.2 0.0 9.1e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|327310075|ref|YP_004336972.1| - 1.4e-07 31.5 0.0 4.3e-05 23.3 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|327310075|ref|YP_004336972.1| - 1.2e-06 27.9 0.0 0.00057 19.2 0.2 2.9 2 1 1 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|327310075|ref|YP_004336972.1| - 4.7e-06 27.4 5.2 0.0028 18.3 2.5 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|327310075|ref|YP_004336972.1| - 0.019 14.7 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein BAAT_C PF08840.11 gi|327310075|ref|YP_004336972.1| - 0.037 14.0 0.0 0.053 13.4 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|327310075|ref|YP_004336972.1| - 0.053 13.1 0.2 0.23 11.0 0.2 1.9 1 1 0 1 1 1 0 Dienelactone hydrolase family Lipase_3 PF01764.25 gi|327310075|ref|YP_004336972.1| - 0.083 12.8 0.1 0.17 11.7 0.1 1.5 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_5 PF12695.7 gi|327310075|ref|YP_004336972.1| - 0.089 12.6 0.0 0.43 10.3 0.0 2.0 2 0 0 2 2 2 0 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|327310075|ref|YP_004336972.1| - 0.18 11.6 0.0 4.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase FSH1 PF03959.13 gi|327310075|ref|YP_004336972.1| - 0.21 11.2 0.0 0.37 10.4 0.0 1.5 1 1 0 1 1 1 0 Serine hydrolase (FSH1) PAC2 PF09754.9 gi|327310076|ref|YP_004336973.1| - 1.9e-37 129.4 0.5 2.5e-37 129.0 0.5 1.2 1 0 0 1 1 1 1 PAC2 family Peripla_BP_6 PF13458.6 gi|327310077|ref|YP_004336974.1| - 6.2e-52 177.3 6.9 8.2e-52 177.0 6.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|327310077|ref|YP_004336974.1| - 4e-16 59.1 0.1 5.4e-16 58.6 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|327310077|ref|YP_004336974.1| - 3.2e-15 56.0 0.4 8.2e-09 34.9 0.2 2.5 2 1 0 2 2 2 2 Periplasmic binding protein domain ABC_sub_bind PF04392.12 gi|327310077|ref|YP_004336974.1| - 0.0037 16.6 0.1 0.0055 16.0 0.1 1.2 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_4 PF13407.6 gi|327310077|ref|YP_004336974.1| - 0.023 14.2 1.6 0.32 10.5 0.1 2.6 3 0 0 3 3 3 0 Periplasmic binding protein domain BPD_transp_2 PF02653.16 gi|327310078|ref|YP_004336975.1| - 3.3e-36 124.8 45.7 3.8e-36 124.6 45.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|327310079|ref|YP_004336976.1| - 1.1e-32 113.3 39.3 1.3e-32 113.1 39.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component WCOR413 PF05562.11 gi|327310079|ref|YP_004336976.1| - 0.018 15.0 3.3 0.023 14.7 1.1 2.2 2 1 0 2 2 2 0 Cold acclimation protein WCOR413 ABC_tran PF00005.27 gi|327310080|ref|YP_004336977.1| - 5.2e-27 95.0 0.0 7.1e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310080|ref|YP_004336977.1| - 9.9e-08 32.1 0.1 4.6e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|327310080|ref|YP_004336977.1| - 2.4e-05 24.1 0.5 5e-05 23.1 0.5 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|327310080|ref|YP_004336977.1| - 2.8e-05 24.7 0.3 5e-05 23.9 0.3 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|327310080|ref|YP_004336977.1| - 4.5e-05 23.0 0.3 0.0034 16.8 0.2 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|327310080|ref|YP_004336977.1| - 6e-05 22.7 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|327310080|ref|YP_004336977.1| - 0.0001 22.6 0.1 0.13 12.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain ABC_ATPase PF09818.9 gi|327310080|ref|YP_004336977.1| - 0.00013 21.0 1.2 0.2 10.4 0.1 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|327310080|ref|YP_004336977.1| - 0.00018 21.3 0.1 0.0011 18.7 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|327310080|ref|YP_004336977.1| - 0.0018 18.1 0.0 0.0039 16.9 0.0 1.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|327310080|ref|YP_004336977.1| - 0.0019 18.6 0.0 0.0037 17.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|327310080|ref|YP_004336977.1| - 0.0047 16.1 0.2 0.059 12.6 0.1 2.1 2 0 0 2 2 2 1 NB-ARC domain AAA_25 PF13481.6 gi|327310080|ref|YP_004336977.1| - 0.014 15.0 0.1 0.22 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|327310080|ref|YP_004336977.1| - 0.014 15.0 0.0 0.037 13.7 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF3584 PF12128.8 gi|327310080|ref|YP_004336977.1| - 0.023 12.2 0.1 0.032 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) T2SSE PF00437.20 gi|327310080|ref|YP_004336977.1| - 0.023 13.7 0.2 0.12 11.4 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|327310080|ref|YP_004336977.1| - 0.029 14.3 0.1 0.051 13.5 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|327310080|ref|YP_004336977.1| - 0.035 13.8 0.0 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|327310080|ref|YP_004336977.1| - 0.046 13.6 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|327310080|ref|YP_004336977.1| - 0.048 13.3 0.1 0.087 12.4 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|327310080|ref|YP_004336977.1| - 0.048 13.6 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RecA PF00154.21 gi|327310080|ref|YP_004336977.1| - 0.049 13.1 0.0 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_27 PF13514.6 gi|327310080|ref|YP_004336977.1| - 0.053 13.1 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|327310080|ref|YP_004336977.1| - 0.059 13.5 0.2 0.098 12.7 0.2 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|327310080|ref|YP_004336977.1| - 0.06 13.6 0.0 0.35 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|327310080|ref|YP_004336977.1| - 0.091 12.8 0.0 0.99 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rep_fac_C PF08542.11 gi|327310080|ref|YP_004336977.1| - 0.12 12.8 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 Replication factor C C-terminal domain DLIC PF05783.11 gi|327310080|ref|YP_004336977.1| - 0.14 11.0 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC_tran PF00005.27 gi|327310081|ref|YP_004336978.1| - 1.2e-30 106.9 0.0 1.7e-30 106.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310081|ref|YP_004336978.1| - 1.5e-13 51.2 0.7 1.1e-07 31.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327310081|ref|YP_004336978.1| - 5.4e-06 26.0 0.2 0.00026 20.5 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|327310081|ref|YP_004336978.1| - 0.0001 22.6 0.1 0.066 13.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|327310081|ref|YP_004336978.1| - 0.00039 20.1 0.1 0.00088 19.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|327310081|ref|YP_004336978.1| - 0.00043 20.1 0.1 0.0085 15.8 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|327310081|ref|YP_004336978.1| - 0.00086 19.9 0.6 0.0016 19.0 0.2 1.6 2 0 0 2 2 2 1 AAA domain MukB PF04310.12 gi|327310081|ref|YP_004336978.1| - 0.0015 18.4 0.1 0.0025 17.7 0.1 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_19 PF13245.6 gi|327310081|ref|YP_004336978.1| - 0.004 17.5 0.5 0.024 15.0 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|327310081|ref|YP_004336978.1| - 0.009 15.8 0.1 0.047 13.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|327310081|ref|YP_004336978.1| - 0.009 16.2 0.1 0.087 13.1 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AbrB_C PF18277.1 gi|327310081|ref|YP_004336978.1| - 0.022 14.4 0.0 0.063 12.9 0.0 1.8 1 0 0 1 1 1 0 AbrB C-terminal domain AAA_27 PF13514.6 gi|327310081|ref|YP_004336978.1| - 0.024 14.2 0.1 0.083 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|327310081|ref|YP_004336978.1| - 0.068 12.7 0.0 0.17 11.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|327310081|ref|YP_004336978.1| - 0.074 13.5 0.3 0.51 10.8 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|327310081|ref|YP_004336978.1| - 0.089 12.6 0.1 0.26 11.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|327310081|ref|YP_004336978.1| - 0.099 12.3 0.4 0.19 11.3 0.1 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.6 gi|327310081|ref|YP_004336978.1| - 0.15 12.5 0.0 0.26 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF169 PF02596.15 gi|327310082|ref|YP_004336979.1| - 4.8e-28 98.5 0.0 5.5e-28 98.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 ATP-cone PF03477.16 gi|327310083|ref|YP_004336980.1| - 4.5e-09 36.7 0.1 1.4e-08 35.2 0.0 1.7 2 0 0 2 2 2 1 ATP cone domain SPO22 PF08631.10 gi|327310083|ref|YP_004336980.1| - 0.12 11.8 0.0 0.31 10.5 0.0 1.5 1 1 1 2 2 2 0 Meiosis protein SPO22/ZIP4 like Ribosomal_L5_C PF00673.21 gi|327310084|ref|YP_004336981.1| - 1.5e-23 82.8 0.0 3e-23 81.8 0.0 1.6 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|327310084|ref|YP_004336981.1| - 5.8e-19 68.2 0.1 1.2e-18 67.1 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 Late_protein_L1 PF00500.18 gi|327310084|ref|YP_004336981.1| - 0.22 10.3 0.0 0.28 9.9 0.0 1.1 1 0 0 1 1 1 0 L1 (late) protein TPR_2 PF07719.17 gi|327310084|ref|YP_004336981.1| - 0.49 10.6 1.9 67 4.0 0.1 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat Diphthami_syn_2 PF01902.17 gi|327310085|ref|YP_004336982.1| - 3e-19 69.4 0.0 3.6e-19 69.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase Usp PF00582.26 gi|327310085|ref|YP_004336982.1| - 0.065 13.7 0.1 0.081 13.4 0.1 1.2 1 0 0 1 1 1 0 Universal stress protein family Asn_synthase PF00733.21 gi|327310086|ref|YP_004336983.1| - 2.1e-37 129.7 0.0 1.6e-17 64.2 0.0 2.0 2 0 0 2 2 2 2 Asparagine synthase QueC PF06508.13 gi|327310086|ref|YP_004336983.1| - 0.06 12.8 0.0 0.096 12.2 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC NOA36 PF06524.12 gi|327310086|ref|YP_004336983.1| - 0.18 11.1 0.0 0.27 10.5 0.0 1.1 1 0 0 1 1 1 0 NOA36 protein zinc_ribbon_2 PF13240.6 gi|327310086|ref|YP_004336983.1| - 0.23 11.2 5.9 1.6 8.5 0.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain NAD_kinase PF01513.21 gi|327310087|ref|YP_004336984.1| - 1.3e-15 57.3 1.0 1.4e-15 57.3 0.1 1.4 2 0 0 2 2 2 1 ATP-NAD kinase HTH_24 PF13412.6 gi|327310087|ref|YP_004336984.1| - 1.1e-07 31.3 0.0 2.3e-06 27.1 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|327310087|ref|YP_004336984.1| - 7.3e-06 25.8 0.0 3.1e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|327310087|ref|YP_004336984.1| - 2.3e-05 24.3 0.2 0.0001 22.3 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|327310087|ref|YP_004336984.1| - 5.8e-05 22.9 0.2 0.00028 20.7 0.1 2.1 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|327310087|ref|YP_004336984.1| - 7.4e-05 23.0 0.0 0.00016 22.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|327310087|ref|YP_004336984.1| - 0.00014 21.7 0.1 0.00025 20.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|327310087|ref|YP_004336984.1| - 0.00072 19.5 0.0 0.0019 18.2 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_9 PF08221.11 gi|327310087|ref|YP_004336984.1| - 0.0011 19.0 0.0 0.002 18.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF2250 PF10007.9 gi|327310087|ref|YP_004336984.1| - 0.0017 18.4 0.0 0.0029 17.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|327310087|ref|YP_004336984.1| - 0.0049 17.3 0.0 0.011 16.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain RepL PF05732.11 gi|327310087|ref|YP_004336984.1| - 0.0054 16.2 0.0 0.0078 15.7 0.0 1.2 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_42 PF06224.12 gi|327310087|ref|YP_004336984.1| - 0.0068 16.0 1.5 0.024 14.2 1.5 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|327310087|ref|YP_004336984.1| - 0.016 15.1 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|327310087|ref|YP_004336984.1| - 0.027 14.4 0.0 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 HTH domain HTH_IclR PF09339.10 gi|327310087|ref|YP_004336984.1| - 0.073 12.9 0.4 0.18 11.7 0.1 1.9 2 0 0 2 2 1 0 IclR helix-turn-helix domain GntR PF00392.21 gi|327310087|ref|YP_004336984.1| - 0.08 12.6 0.2 0.16 11.7 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FaeA PF04703.12 gi|327310087|ref|YP_004336984.1| - 0.17 12.2 0.0 0.56 10.6 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein Lyase_1 PF00206.20 gi|327310088|ref|YP_004336985.1| - 4.5e-31 108.4 0.0 6.1e-31 108.0 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|327310088|ref|YP_004336985.1| - 0.07 13.2 0.2 0.16 12.1 0.2 1.6 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal ADSL_C PF10397.9 gi|327310088|ref|YP_004336985.1| - 0.14 12.7 0.2 0.14 12.7 0.2 2.8 3 0 0 3 3 3 0 Adenylosuccinate lyase C-terminus DUF1779 PF08680.10 gi|327310089|ref|YP_004336986.1| - 0.068 13.4 0.0 0.076 13.2 0.0 1.0 1 0 0 1 1 1 0 TATA-box binding PIN PF01850.21 gi|327310090|ref|YP_004336987.1| - 7.6e-10 39.3 3.3 9.8e-10 39.0 3.3 1.2 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|327310090|ref|YP_004336987.1| - 9.3e-05 22.7 0.4 0.00011 22.4 0.4 1.1 1 0 0 1 1 1 1 PIN domain Adenylsucc_synt PF00709.21 gi|327310091|ref|YP_004336988.1| - 3.5e-64 217.3 0.0 1.6e-34 119.6 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Pyr_redox_2 PF07992.14 gi|327310092|ref|YP_004336989.1| - 4.9e-14 52.3 0.4 1.9e-06 27.4 0.1 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|327310092|ref|YP_004336989.1| - 9.2e-11 41.1 0.7 7.8e-06 24.8 0.4 2.6 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|327310092|ref|YP_004336989.1| - 3.4e-10 40.0 5.9 1.2e-05 25.0 0.7 2.9 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|327310092|ref|YP_004336989.1| - 3.7e-09 36.2 0.9 0.0017 17.6 0.5 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|327310092|ref|YP_004336989.1| - 4.5e-09 36.0 0.1 0.0086 15.4 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|327310092|ref|YP_004336989.1| - 6.8e-07 28.8 0.1 1.2e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|327310092|ref|YP_004336989.1| - 1.8e-06 27.3 8.7 3.1e-06 26.6 1.4 2.9 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|327310092|ref|YP_004336989.1| - 1.5e-05 25.1 0.1 5e-05 23.4 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|327310092|ref|YP_004336989.1| - 0.0001 21.7 0.4 0.00016 21.1 0.4 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|327310092|ref|YP_004336989.1| - 0.00054 20.5 1.4 0.3 11.7 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|327310092|ref|YP_004336989.1| - 0.0014 17.8 0.6 0.0023 17.1 0.6 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|327310092|ref|YP_004336989.1| - 0.0036 16.7 0.2 0.0077 15.6 0.2 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|327310092|ref|YP_004336989.1| - 0.052 12.8 5.5 2.6 7.2 0.0 3.1 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|327310092|ref|YP_004336989.1| - 0.063 13.3 0.8 3.5 7.6 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding NTS_2 PF15448.6 gi|327310092|ref|YP_004336989.1| - 0.066 13.6 0.0 0.21 12.0 0.0 1.9 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein Trp_halogenase PF04820.14 gi|327310092|ref|YP_004336989.1| - 0.27 10.0 0.7 0.39 9.5 0.7 1.2 1 0 0 1 1 1 0 Tryptophan halogenase His_Phos_1 PF00300.22 gi|327310093|ref|YP_004336990.1| - 2.8e-11 43.5 1.5 2.4e-09 37.2 0.5 2.0 2 0 0 2 2 2 2 Histidine phosphatase superfamily (branch 1) eRF1_1 PF03463.15 gi|327310094|ref|YP_004336991.1| - 3.5e-19 69.1 0.0 5.8e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|327310094|ref|YP_004336991.1| - 2.9e-09 37.4 0.0 1.2e-08 35.4 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 3 baeRF_family3 PF18845.1 gi|327310094|ref|YP_004336991.1| - 0.023 15.0 0.1 0.18 12.0 0.0 2.1 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 3 baeRF_family10 PF18854.1 gi|327310094|ref|YP_004336991.1| - 0.027 14.7 0.9 2.7 8.2 0.0 2.7 2 2 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family7 PF18849.1 gi|327310094|ref|YP_004336991.1| - 0.03 14.5 0.0 0.055 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 7 DoxX_3 PF13781.6 gi|327310095|ref|YP_004336992.1| - 0.027 15.1 2.4 0.032 14.9 2.4 1.1 1 0 0 1 1 1 0 DoxX-like family DHDPS PF00701.22 gi|327310096|ref|YP_004336993.1| - 4.8e-56 189.6 0.0 6e-56 189.3 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ACT_6 PF13740.6 gi|327310097|ref|YP_004336994.1| - 1.9e-17 63.0 1.6 2.2e-17 62.8 1.6 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|327310097|ref|YP_004336994.1| - 1.2e-11 44.1 3.0 1.6e-11 43.8 3.0 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|327310097|ref|YP_004336994.1| - 1.4e-05 25.6 2.7 2.2e-05 25.0 2.5 1.5 1 1 1 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|327310097|ref|YP_004336994.1| - 0.00025 20.8 0.7 0.00043 20.0 0.7 1.5 1 1 0 1 1 1 1 ACT domain DUF711 PF05167.12 gi|327310098|ref|YP_004336995.1| - 6e-137 456.9 0.5 7.1e-137 456.6 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DUF1297 PF06973.12 gi|327310099|ref|YP_004336996.1| - 3.3e-78 261.5 0.0 4.1e-78 261.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|327310099|ref|YP_004336996.1| - 4.4e-45 152.6 0.0 6.2e-45 152.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF1297 PF06973.12 gi|327310100|ref|YP_004336997.1| - 2.8e-51 173.8 0.3 6.4e-51 172.6 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|327310100|ref|YP_004336997.1| - 3.2e-38 130.4 0.0 4.8e-38 129.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|327310100|ref|YP_004336997.1| - 1.6e-05 25.0 0.0 2.8e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|327310100|ref|YP_004336997.1| - 9.3e-05 22.1 0.0 0.00025 20.7 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 gi|327310100|ref|YP_004336997.1| - 0.019 14.5 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|327310100|ref|YP_004336997.1| - 0.08 12.5 0.0 0.17 11.4 0.0 1.5 2 0 0 2 2 2 0 ATP-grasp domain PIN PF01850.21 gi|327310101|ref|YP_004336998.1| - 1.7e-08 35.0 0.1 2e-08 34.7 0.1 1.1 1 0 0 1 1 1 1 PIN domain CcdA PF07362.12 gi|327310102|ref|YP_004336999.1| - 3.7e-06 27.3 5.3 6.1e-06 26.6 5.0 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA PRP1_N PF06424.12 gi|327310102|ref|YP_004336999.1| - 0.0034 17.8 1.3 0.0038 17.6 1.3 1.1 1 0 0 1 1 1 1 PRP1 splicing factor, N-terminal ATPase PF06745.13 gi|327310102|ref|YP_004336999.1| - 0.0079 15.6 0.8 0.0083 15.5 0.8 1.0 1 0 0 1 1 1 1 KaiC DUF4145 PF13643.6 gi|327310102|ref|YP_004336999.1| - 0.022 14.9 0.8 0.025 14.7 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) DUF3619 PF12279.8 gi|327310102|ref|YP_004336999.1| - 0.025 14.9 1.6 0.028 14.7 1.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3619) PSK_trans_fac PF07704.11 gi|327310102|ref|YP_004336999.1| - 0.03 15.1 8.9 0.031 15.0 8.9 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor IZUMO PF15005.6 gi|327310102|ref|YP_004336999.1| - 0.053 14.0 0.3 0.057 13.9 0.3 1.0 1 0 0 1 1 1 0 Izumo sperm-egg fusion, Ig domain-associated DUF4194 PF13835.6 gi|327310102|ref|YP_004336999.1| - 0.054 13.2 6.2 0.058 13.1 6.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) DUF677 PF05055.12 gi|327310102|ref|YP_004336999.1| - 0.073 12.0 2.6 0.075 11.9 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Terminase_2 PF03592.16 gi|327310102|ref|YP_004336999.1| - 0.15 12.5 1.9 0.17 12.4 1.9 1.1 1 0 0 1 1 1 0 Terminase small subunit PocR PF10114.9 gi|327310102|ref|YP_004336999.1| - 0.16 11.7 0.6 0.18 11.6 0.6 1.1 1 0 0 1 1 1 0 Sensory domain found in PocR YtxH PF12732.7 gi|327310102|ref|YP_004336999.1| - 0.25 11.9 2.7 0.33 11.5 2.7 1.1 1 0 0 1 1 1 0 YtxH-like protein Ran-binding PF05508.11 gi|327310102|ref|YP_004336999.1| - 0.28 10.1 2.0 0.33 9.9 2.0 1.0 1 0 0 1 1 1 0 RanGTP-binding protein Histone_HNS PF00816.21 gi|327310102|ref|YP_004336999.1| - 2.2 9.1 7.2 17 6.3 5.3 2.0 1 1 1 2 2 2 0 H-NS histone family Lactamase_B_2 PF12706.7 gi|327310103|ref|YP_004337000.1| - 2.2e-24 86.1 0.4 2.6e-24 85.9 0.4 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|327310103|ref|YP_004337000.1| - 1e-08 35.5 2.9 2.8e-08 34.0 2.9 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|327310103|ref|YP_004337000.1| - 0.00018 21.5 0.1 0.00035 20.5 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NAD_binding_10 PF13460.6 gi|327310103|ref|YP_004337000.1| - 0.015 15.2 0.1 0.038 13.9 0.0 1.6 2 0 0 2 2 2 0 NAD(P)H-binding DUF839 PF05787.13 gi|327310103|ref|YP_004337000.1| - 0.023 13.8 0.0 0.029 13.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF839) DUF359 PF04019.12 gi|327310104|ref|YP_004337001.1| - 7.6e-30 103.1 0.0 9.1e-30 102.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Lactamase_B PF00753.27 gi|327310106|ref|YP_004337003.1| - 1e-13 51.7 6.0 2.2e-13 50.6 6.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|327310106|ref|YP_004337003.1| - 0.0038 16.7 0.5 0.0092 15.5 0.5 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain BLACT_WH PF17778.1 gi|327310106|ref|YP_004337003.1| - 0.046 13.7 0.0 0.093 12.7 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain PDZ_6 PF17820.1 gi|327310106|ref|YP_004337003.1| - 0.12 12.3 2.2 6.9 6.6 0.1 3.1 3 1 0 3 3 3 0 PDZ domain DUF1743 PF08489.11 gi|327310107|ref|YP_004337004.1| - 3.8e-27 94.7 0.0 6.6e-27 93.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) DZR PF12773.7 gi|327310107|ref|YP_004337004.1| - 0.12 12.4 1.4 0.18 11.8 0.4 1.7 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|327310107|ref|YP_004337004.1| - 0.19 11.2 2.2 6.8 6.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|327310107|ref|YP_004337004.1| - 0.2 11.3 4.4 0.4 10.4 4.4 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.8 gi|327310107|ref|YP_004337004.1| - 0.29 11.0 6.5 3.2 7.7 1.6 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_Rg PF17915.1 gi|327310107|ref|YP_004337004.1| - 0.44 10.0 2.7 0.8 9.2 2.7 1.4 1 0 0 1 1 1 0 Reverse gyrase zinc finger Zn_Tnp_IS1595 PF12760.7 gi|327310107|ref|YP_004337004.1| - 0.74 9.8 4.4 2.8 8.0 4.3 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain BPD_transp_1 PF00528.22 gi|327310108|ref|YP_004337005.1| - 6.1e-17 62.0 46.0 1.2e-11 44.7 16.8 4.0 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component Chitin_synth_2 PF03142.15 gi|327310108|ref|YP_004337005.1| - 0.13 10.9 4.4 0.23 10.0 4.4 1.3 1 0 0 1 1 1 0 Chitin synthase SBP_bac_1 PF01547.25 gi|327310109|ref|YP_004337006.1| - 6.3e-15 55.9 0.0 1.6e-14 54.6 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|327310109|ref|YP_004337006.1| - 8.6e-08 32.3 0.1 2.8e-07 30.6 0.1 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Hydrolase_3 PF08282.12 gi|327310110|ref|YP_004337007.1| - 1.8e-06 27.9 0.0 0.00019 21.3 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|327310110|ref|YP_004337007.1| - 5.7e-06 26.0 0.0 0.00031 20.4 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|327310110|ref|YP_004337007.1| - 0.00036 20.9 0.0 0.092 13.0 0.1 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|327310110|ref|YP_004337007.1| - 0.0021 18.5 0.5 0.18 12.2 0.5 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|327310110|ref|YP_004337007.1| - 0.077 12.1 0.0 0.14 11.2 0.0 1.4 2 0 0 2 2 2 0 Trehalose-phosphatase HAD_2 PF13419.6 gi|327310110|ref|YP_004337007.1| - 0.1 12.7 0.1 14 5.7 0.0 2.6 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase NTP_transf_2 PF01909.23 gi|327310111|ref|YP_004337008.1| - 9.6e-11 41.8 0.0 1.1e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327310111|ref|YP_004337008.1| - 0.00035 20.6 0.0 0.00049 20.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HEPN PF05168.14 gi|327310112|ref|YP_004337009.1| - 2.4e-28 98.6 0.1 2.7e-28 98.5 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PknG_TPR PF16918.5 gi|327310113|ref|YP_004337010.1| - 0.00078 18.3 0.1 0.001 17.9 0.1 1.3 1 0 0 1 1 1 1 Protein kinase G tetratricopeptide repeat TPR_19 PF14559.6 gi|327310113|ref|YP_004337010.1| - 0.02 15.4 0.5 0.02 15.4 0.5 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|327310113|ref|YP_004337010.1| - 0.079 13.6 0.2 0.079 13.6 0.2 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|327310113|ref|YP_004337010.1| - 0.31 12.0 0.3 0.31 12.0 0.3 3.2 2 2 0 2 2 2 0 Tetratricopeptide repeat Pox_A_type_inc PF04508.12 gi|327310113|ref|YP_004337010.1| - 0.45 10.5 2.5 2.1 8.3 2.5 2.2 1 0 0 1 1 1 0 Viral A-type inclusion protein repeat SSF PF00474.17 gi|327310114|ref|YP_004337011.1| - 8.3e-15 54.5 38.1 6.3e-14 51.6 38.1 2.1 1 1 0 1 1 1 1 Sodium:solute symporter family DUF3311 PF11755.8 gi|327310115|ref|YP_004337012.1| - 2.1e-12 46.8 9.1 2.4e-12 46.6 9.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) YobH PF13996.6 gi|327310115|ref|YP_004337012.1| - 0.31 11.1 1.5 0.45 10.6 1.5 1.2 1 0 0 1 1 1 0 YobH-like protein Peptidase_M20 PF01546.28 gi|327310116|ref|YP_004337013.1| - 1.8e-35 122.5 0.1 2.3e-35 122.2 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|327310116|ref|YP_004337013.1| - 2e-19 69.5 0.0 4e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain AMP-binding PF00501.28 gi|327310118|ref|YP_004337015.1| - 2e-88 296.8 0.0 2.6e-88 296.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|327310118|ref|YP_004337015.1| - 1.9e-30 105.6 0.2 5e-30 104.3 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|327310118|ref|YP_004337015.1| - 1.2e-20 73.2 0.7 1.2e-20 73.2 0.7 2.8 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus 4HBT_2 PF13279.6 gi|327310119|ref|YP_004337016.1| - 6.7e-06 26.6 0.0 7.9e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|327310119|ref|YP_004337016.1| - 2.3e-05 24.6 0.0 3.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily CobW_C PF07683.14 gi|327310119|ref|YP_004337016.1| - 0.038 13.9 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain PaREP1 PF05942.11 gi|327310120|ref|YP_004337017.1| - 5.5e-25 87.5 0.8 7e-25 87.2 0.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|327310120|ref|YP_004337017.1| - 0.00091 19.3 2.0 0.0018 18.4 2.0 1.5 1 1 0 1 1 1 1 HEPN domain CoA_transf_3 PF02515.17 gi|327310121|ref|YP_004337018.1| - 1.4e-54 185.6 0.0 1.8e-54 185.2 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III AMP-binding PF00501.28 gi|327310122|ref|YP_004337019.1| - 5.2e-70 236.1 0.0 6.9e-70 235.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|327310122|ref|YP_004337019.1| - 9.4e-22 77.8 0.8 2.4e-21 76.5 0.8 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|327310122|ref|YP_004337019.1| - 1.6e-10 40.7 0.2 1.6e-10 40.7 0.2 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus RHH_6 PF16762.5 gi|327310123|ref|YP_004337020.1| - 0.13 12.9 0.1 0.48 11.1 0.1 1.9 1 1 0 1 1 1 0 Ribbon-helix-helix domain Thiolase_N PF00108.23 gi|327310124|ref|YP_004337021.1| - 3.3e-10 39.7 0.0 7.1e-09 35.4 0.0 2.2 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|327310124|ref|YP_004337021.1| - 9.8e-05 22.0 0.0 0.67 9.6 0.0 2.6 2 0 0 2 2 2 2 Thiolase, C-terminal domain Peptidase_M22 PF00814.25 gi|327310124|ref|YP_004337021.1| - 0.051 13.3 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 Glycoprotease family ACP_syn_III PF08545.10 gi|327310124|ref|YP_004337021.1| - 0.065 13.1 0.0 18 5.3 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|327310125|ref|YP_004337022.1| - 8.1e-13 48.2 0.1 1.2e-12 47.6 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|327310125|ref|YP_004337022.1| - 6.4e-12 45.1 0.7 1.2e-11 44.2 0.7 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35_N PF12172.8 gi|327310126|ref|YP_004337023.1| - 6e-08 32.4 0.1 9.3e-08 31.8 0.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|327310126|ref|YP_004337023.1| - 5.4e-06 26.3 0.3 7.9e-06 25.8 0.3 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated CpXC PF14353.6 gi|327310126|ref|YP_004337023.1| - 0.1 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 CpXC protein zf-C2HC_2 PF13913.6 gi|327310126|ref|YP_004337023.1| - 0.11 12.5 0.6 0.2 11.6 0.6 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.6 gi|327310126|ref|YP_004337023.1| - 3 7.7 5.3 0.87 9.4 1.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Acyl-CoA_dh_1 PF00441.24 gi|327310127|ref|YP_004337024.1| - 4e-42 143.9 1.1 6e-42 143.4 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|327310127|ref|YP_004337024.1| - 7.3e-29 100.7 0.0 1.2e-28 100.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|327310127|ref|YP_004337024.1| - 2.4e-23 82.1 0.0 4.4e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|327310127|ref|YP_004337024.1| - 6e-18 65.4 0.3 1.2e-17 64.4 0.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Peptidase_M48 PF01435.18 gi|327310130|ref|YP_004337027.1| - 0.14 11.9 0.2 0.86 9.3 0.2 1.9 1 1 0 1 1 1 0 Peptidase family M48 SprT-like PF10263.9 gi|327310130|ref|YP_004337027.1| - 0.17 11.7 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Molybdopterin PF00384.22 gi|327310131|ref|YP_004337028.1| - 1.8e-31 109.6 0.0 7.1e-18 64.8 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|327310131|ref|YP_004337028.1| - 0.00049 20.1 0.0 0.0031 17.5 0.0 2.4 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Ribosomal_L44 PF00935.19 gi|327310132|ref|YP_004337029.1| - 7.1e-27 93.7 5.6 8.3e-27 93.5 5.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|327310132|ref|YP_004337029.1| - 0.0054 16.1 1.6 1.7 8.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-Mss51 PF13824.6 gi|327310132|ref|YP_004337029.1| - 0.0077 16.3 0.2 1.3 9.2 0.0 2.1 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 RecR PF02132.15 gi|327310132|ref|YP_004337029.1| - 0.022 14.3 1.6 0.16 11.6 0.2 2.2 2 0 0 2 2 2 0 RecR protein Rubredoxin_2 PF18073.1 gi|327310132|ref|YP_004337029.1| - 0.025 14.3 2.1 0.46 10.2 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF2225 PF09986.9 gi|327310132|ref|YP_004337029.1| - 0.028 14.1 1.0 0.037 13.8 1.0 1.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) RNA_POL_M_15KD PF02150.16 gi|327310132|ref|YP_004337029.1| - 0.037 13.9 0.4 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_4 PF13717.6 gi|327310132|ref|YP_004337029.1| - 0.054 13.4 2.0 3.1 7.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|327310132|ref|YP_004337029.1| - 0.072 12.8 4.5 0.71 9.7 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PHD_2 PF13831.6 gi|327310132|ref|YP_004337029.1| - 0.12 12.0 3.1 0.31 10.6 0.2 2.5 3 0 0 3 3 3 0 PHD-finger DZR PF12773.7 gi|327310132|ref|YP_004337029.1| - 0.15 12.1 1.9 0.56 10.3 1.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|327310132|ref|YP_004337029.1| - 0.16 11.6 0.6 11 5.7 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger IBR PF01485.21 gi|327310132|ref|YP_004337029.1| - 0.19 12.0 3.0 0.32 11.2 3.0 1.4 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain TF_Zn_Ribbon PF08271.12 gi|327310132|ref|YP_004337029.1| - 0.2 11.2 1.8 5.8 6.5 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf_C2H2_10 PF18414.1 gi|327310132|ref|YP_004337029.1| - 2 8.1 3.4 13 5.5 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger Ribosomal_S27e PF01667.17 gi|327310133|ref|YP_004337030.1| - 2.5e-25 87.9 0.4 2.8e-25 87.8 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|327310133|ref|YP_004337030.1| - 0.00029 20.3 0.9 0.00037 20.0 0.9 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding DUF3797 PF12677.7 gi|327310133|ref|YP_004337030.1| - 0.0028 17.5 0.7 0.025 14.4 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) zinc_ribbon_6 PF14599.6 gi|327310133|ref|YP_004337030.1| - 0.0045 17.0 0.1 0.0058 16.6 0.1 1.2 1 0 0 1 1 1 1 Zinc-ribbon zf-RRN7 PF11781.8 gi|327310133|ref|YP_004337030.1| - 0.01 15.5 0.6 1.7 8.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|327310133|ref|YP_004337030.1| - 0.015 15.3 0.1 0.019 15.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2 PF00096.26 gi|327310133|ref|YP_004337030.1| - 0.023 15.2 0.2 1.6 9.4 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type DUF35_N PF12172.8 gi|327310133|ref|YP_004337030.1| - 0.026 14.4 1.7 3.8 7.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|327310133|ref|YP_004337030.1| - 0.039 13.4 0.4 0.77 9.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|327310133|ref|YP_004337030.1| - 0.054 13.3 1.7 0.82 9.6 1.7 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DZR PF12773.7 gi|327310133|ref|YP_004337030.1| - 0.058 13.4 0.3 0.11 12.6 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|327310133|ref|YP_004337030.1| - 0.065 13.2 0.8 0.085 12.8 0.8 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|327310133|ref|YP_004337030.1| - 0.069 13.2 2.6 5.8 7.0 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|327310133|ref|YP_004337030.1| - 0.072 13.2 1.0 0.14 12.3 1.0 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|327310133|ref|YP_004337030.1| - 0.12 12.8 0.5 0.15 12.5 0.5 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|327310133|ref|YP_004337030.1| - 0.16 11.7 1.8 1.3 8.8 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|327310133|ref|YP_004337030.1| - 0.31 10.8 8.2 0.31 10.8 5.8 2.2 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|327310133|ref|YP_004337030.1| - 0.54 10.2 4.9 3.2 7.8 0.3 2.4 1 1 1 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|327310133|ref|YP_004337030.1| - 0.56 9.9 5.7 19 5.0 5.5 2.2 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Desulfoferrod_N PF06397.12 gi|327310133|ref|YP_004337030.1| - 0.69 9.6 6.1 2.8 7.6 0.7 2.5 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain CcmH PF03918.14 gi|327310133|ref|YP_004337030.1| - 0.86 8.9 0.1 0.86 8.9 0.1 1.7 1 1 1 2 2 2 0 Cytochrome C biogenesis protein DUF1610 PF07754.11 gi|327310133|ref|YP_004337030.1| - 1.4 8.9 5.0 4.1 7.4 0.9 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-NADH-PPase PF09297.11 gi|327310133|ref|YP_004337030.1| - 1.7 8.4 4.6 1.7 8.4 0.6 2.1 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_primase_S PF01896.19 gi|327310135|ref|YP_004337032.1| - 1.1e-20 74.4 0.0 2.3e-20 73.4 0.0 1.6 1 0 0 1 1 1 1 DNA primase small subunit Sugar_tr PF00083.24 gi|327310136|ref|YP_004337033.1| - 1.8e-32 112.8 33.0 1.4e-22 80.2 12.6 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|327310136|ref|YP_004337033.1| - 3.9e-26 91.8 71.8 6.1e-22 78.0 37.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Herpes_LAMP2 PF06126.11 gi|327310136|ref|YP_004337033.1| - 0.26 9.9 2.6 2.9 6.4 0.3 2.2 2 0 0 2 2 2 0 Herpesvirus Latent membrane protein 2 PCNA_C PF02747.15 gi|327310137|ref|YP_004337034.1| - 4.5e-13 49.5 0.2 1.2e-12 48.1 0.1 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|327310137|ref|YP_004337034.1| - 1.1e-12 47.7 0.0 9.2e-12 44.8 0.0 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|327310137|ref|YP_004337034.1| - 1.3e-06 28.1 0.0 1.6e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|327310137|ref|YP_004337034.1| - 4.9e-05 22.5 0.0 0.008 15.3 0.0 2.3 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta PF00712.19 gi|327310137|ref|YP_004337034.1| - 0.036 14.2 0.2 0.69 10.0 0.0 2.3 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain Glycos_transf_N PF04413.16 gi|327310137|ref|YP_004337034.1| - 0.15 11.7 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MazE_antitoxin PF04014.18 gi|327310137|ref|YP_004337034.1| - 0.16 11.9 0.5 0.16 11.9 0.5 2.1 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin TFIIS_C PF01096.18 gi|327310138|ref|YP_004337035.1| - 1.8e-21 75.7 8.8 3e-20 71.8 4.8 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|327310138|ref|YP_004337035.1| - 1.9e-08 34.1 3.8 1.3e-05 25.1 1.0 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|327310138|ref|YP_004337035.1| - 2.1e-05 23.9 4.2 0.007 15.9 1.5 2.7 2 1 0 2 2 2 2 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|327310138|ref|YP_004337035.1| - 0.00011 22.5 3.6 0.019 15.4 1.2 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|327310138|ref|YP_004337035.1| - 0.00018 21.1 9.2 0.42 10.4 0.3 3.2 3 0 0 3 3 3 2 zinc-ribbon domain DUF2387 PF09526.10 gi|327310138|ref|YP_004337035.1| - 0.00024 21.2 3.5 0.026 14.7 1.4 2.2 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) PhnA_Zn_Ribbon PF08274.12 gi|327310138|ref|YP_004337035.1| - 0.00065 19.6 1.7 0.55 10.2 0.4 2.7 2 1 0 2 2 2 2 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|327310138|ref|YP_004337035.1| - 0.00081 19.3 9.0 1.1 9.3 0.5 3.2 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|327310138|ref|YP_004337035.1| - 0.00091 19.2 4.8 0.093 12.8 1.8 2.4 2 1 0 2 2 2 1 Double zinc ribbon UPF0547 PF10571.9 gi|327310138|ref|YP_004337035.1| - 0.0011 19.0 6.2 1.1 9.4 0.1 3.3 3 0 0 3 3 3 1 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|327310138|ref|YP_004337035.1| - 0.0014 18.7 6.6 1.9 8.7 0.0 3.3 3 0 0 3 3 3 1 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|327310138|ref|YP_004337035.1| - 0.0018 18.1 8.5 0.099 12.5 0.1 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 gi|327310138|ref|YP_004337035.1| - 0.002 18.3 5.6 4.1 7.7 0.1 3.1 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) A2L_zn_ribbon PF08792.10 gi|327310138|ref|YP_004337035.1| - 0.0035 17.0 5.5 1.1 9.1 0.1 3.1 3 0 0 3 3 3 2 A2L zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|327310138|ref|YP_004337035.1| - 0.0042 17.0 7.3 1.7 8.7 0.4 3.3 3 0 0 3 3 3 1 SprT-like zinc ribbon domain DUF35_N PF12172.8 gi|327310138|ref|YP_004337035.1| - 0.0047 16.8 5.9 1.4 8.9 0.0 3.2 3 0 0 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|327310138|ref|YP_004337035.1| - 0.0057 16.3 4.6 1.6 8.5 0.1 3.2 3 0 0 3 3 3 1 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.6 gi|327310138|ref|YP_004337035.1| - 0.0073 17.0 3.1 4 8.2 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.11 gi|327310138|ref|YP_004337035.1| - 0.01 15.7 7.0 0.32 11.0 2.5 2.7 1 1 2 3 3 3 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|327310138|ref|YP_004337035.1| - 0.011 15.8 3.1 0.067 13.2 0.4 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|327310138|ref|YP_004337035.1| - 0.012 15.7 4.2 0.75 9.9 0.2 2.9 1 1 2 3 3 3 0 Transposase zinc-binding domain CpXC PF14353.6 gi|327310138|ref|YP_004337035.1| - 0.016 15.2 5.9 0.51 10.4 0.0 3.0 1 1 0 3 3 3 0 CpXC protein zf-ZPR1 PF03367.13 gi|327310138|ref|YP_004337035.1| - 0.041 13.7 0.2 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 ZPR1 zinc-finger domain zf-ribbon_3 PF13248.6 gi|327310138|ref|YP_004337035.1| - 0.042 13.3 9.0 1.1 8.7 0.3 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|327310138|ref|YP_004337035.1| - 0.042 13.4 7.8 0.4 10.3 0.3 2.9 3 0 0 3 3 3 0 C2H2 type zinc-finger DUF1936 PF09151.10 gi|327310138|ref|YP_004337035.1| - 0.063 13.2 8.2 3.3 7.7 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) YhfH PF14149.6 gi|327310138|ref|YP_004337035.1| - 0.068 13.2 2.6 16 5.6 0.2 3.2 3 0 0 3 3 3 0 YhfH-like protein UCH_1 PF13423.6 gi|327310138|ref|YP_004337035.1| - 0.068 12.7 0.3 0.082 12.5 0.3 1.1 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase Rubredoxin_2 PF18073.1 gi|327310138|ref|YP_004337035.1| - 0.073 12.8 10.9 1.5 8.6 1.8 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain Terminase_GpA PF05876.12 gi|327310138|ref|YP_004337035.1| - 0.099 11.2 2.1 0.24 9.9 1.4 1.7 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) zf-ACC PF17848.1 gi|327310138|ref|YP_004337035.1| - 0.12 12.5 6.0 3.6 7.7 0.2 3.2 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_10 PF10058.9 gi|327310138|ref|YP_004337035.1| - 0.12 12.1 5.4 3.5 7.4 2.3 2.8 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_15 PF17032.5 gi|327310138|ref|YP_004337035.1| - 0.13 13.0 3.7 2.1 9.2 3.7 2.2 1 1 0 1 1 1 0 zinc-ribbon family zf-TFIIB PF13453.6 gi|327310138|ref|YP_004337035.1| - 0.15 11.4 6.5 7.9 5.9 0.0 2.9 2 1 0 2 2 2 0 Transcription factor zinc-finger Tho2 PF11262.8 gi|327310138|ref|YP_004337035.1| - 0.15 11.3 0.0 0.17 11.1 0.0 1.0 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 DNA_RNApol_7kD PF03604.13 gi|327310138|ref|YP_004337035.1| - 0.16 11.7 7.8 1.7 8.4 0.1 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF3268 PF11672.8 gi|327310138|ref|YP_004337035.1| - 0.19 12.1 2.2 1.1 9.6 0.9 2.0 2 0 0 2 2 2 0 zinc-finger-containing domain FYDLN_acid PF09538.10 gi|327310138|ref|YP_004337035.1| - 0.19 12.4 4.6 6.7 7.4 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) FdhE PF04216.12 gi|327310138|ref|YP_004337035.1| - 0.21 11.4 4.2 0.051 13.5 1.5 1.4 1 1 0 1 1 1 0 Protein involved in formate dehydrogenase formation Mu-like_Com PF10122.9 gi|327310138|ref|YP_004337035.1| - 0.23 11.0 3.9 15 5.2 0.0 3.1 3 0 0 3 3 3 0 Mu-like prophage protein Com ADK_lid PF05191.14 gi|327310138|ref|YP_004337035.1| - 0.3 11.1 3.9 2 8.5 0.1 2.8 3 0 0 3 3 3 0 Adenylate kinase, active site lid Rubredoxin PF00301.20 gi|327310138|ref|YP_004337035.1| - 0.37 10.8 9.1 14 5.8 0.0 3.2 3 0 0 3 3 3 0 Rubredoxin DUF1610 PF07754.11 gi|327310138|ref|YP_004337035.1| - 0.45 10.5 10.8 1.3 9.0 0.1 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-IS66 PF13005.7 gi|327310138|ref|YP_004337035.1| - 0.5 10.8 5.7 17 5.9 0.0 3.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-tcix PF14952.6 gi|327310138|ref|YP_004337035.1| - 0.53 9.9 8.2 4.9 6.9 0.2 3.1 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Nudix_N_2 PF14803.6 gi|327310138|ref|YP_004337035.1| - 0.71 9.8 10.2 18 5.3 0.4 3.1 2 1 1 3 3 3 0 Nudix N-terminal Baculo_LEF5_C PF11792.8 gi|327310138|ref|YP_004337035.1| - 0.77 9.5 0.0 0.77 9.5 0.0 2.8 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf-H2C2_2 PF13465.6 gi|327310138|ref|YP_004337035.1| - 1.4 9.5 9.3 15 6.2 0.2 3.1 3 0 0 3 3 3 0 Zinc-finger double domain zf-CCHC_5 PF14787.6 gi|327310138|ref|YP_004337035.1| - 1.6 8.5 7.8 24 4.7 0.5 3.2 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger zf-C2H2_3 PF13878.6 gi|327310138|ref|YP_004337035.1| - 1.6 8.6 5.4 43 4.1 0.1 3.1 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO HalOD2 PF18547.1 gi|327310138|ref|YP_004337035.1| - 2.2 8.2 8.1 7.1 6.6 0.5 3.1 3 1 0 3 3 3 0 Halobacterial output domain 2 zf_UBZ PF18439.1 gi|327310138|ref|YP_004337035.1| - 2.9 7.6 8.1 29 4.3 0.3 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-Mss51 PF13824.6 gi|327310138|ref|YP_004337035.1| - 3.1 8.0 9.3 25 5.1 3.5 3.0 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF3797 PF12677.7 gi|327310138|ref|YP_004337035.1| - 3.7 7.5 11.3 32 4.5 0.1 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) Desulfoferrod_N PF06397.12 gi|327310138|ref|YP_004337035.1| - 4.9 6.9 6.4 9.2 6.0 0.2 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain NOB1_Zn_bind PF08772.11 gi|327310138|ref|YP_004337035.1| - 5.1 7.3 8.4 6.5 7.0 2.8 2.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-HIT PF04438.16 gi|327310138|ref|YP_004337035.1| - 7.4 6.5 12.0 20 5.2 1.2 3.2 3 0 0 3 3 3 0 HIT zinc finger Ribosomal_S19e PF01090.19 gi|327310139|ref|YP_004337036.1| - 2e-51 173.3 0.1 2.3e-51 173.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|327310139|ref|YP_004337036.1| - 0.0052 16.6 0.0 0.073 13.0 0.0 2.4 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|327310139|ref|YP_004337036.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Tox-MPTase3 PF15639.6 gi|327310139|ref|YP_004337036.1| - 0.14 12.1 0.1 0.21 11.5 0.1 1.7 1 1 0 1 1 1 0 Metallopeptidase toxin 3 dsDNA_bind PF01984.20 gi|327310140|ref|YP_004337037.1| - 5.9e-20 71.6 8.8 7.9e-20 71.2 8.8 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SDA1 PF05285.12 gi|327310140|ref|YP_004337037.1| - 1.5e-05 24.6 1.6 1.6e-05 24.5 1.6 1.1 1 0 0 1 1 1 1 SDA1 PCP_red PF08369.10 gi|327310140|ref|YP_004337037.1| - 0.18 12.0 7.0 9.7 6.5 3.7 2.8 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Ribosomal_L39 PF00832.20 gi|327310141|ref|YP_004337038.1| - 7.7e-18 63.9 10.6 9.2e-18 63.6 10.6 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|327310142|ref|YP_004337039.1| - 1.5e-15 57.1 0.7 1.9e-15 56.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e NusB PF01029.18 gi|327310143|ref|YP_004337040.1| - 0.0029 17.8 0.2 0.014 15.6 0.1 1.8 1 1 1 2 2 2 1 NusB family HopW1-1 PF15457.6 gi|327310143|ref|YP_004337040.1| - 0.14 11.4 0.1 0.14 11.4 0.1 1.1 1 0 0 1 1 1 0 Type III T3SS secreted effector HopW1-1/HopPmaA Helicase_C_2 PF13307.6 gi|327310144|ref|YP_004337041.1| - 3.9e-12 46.7 0.0 1.4e-11 44.9 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|327310144|ref|YP_004337041.1| - 8.5e-08 32.0 0.0 1.3e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 DEAD_2 AAA_22 PF13401.6 gi|327310144|ref|YP_004337041.1| - 0.02 15.2 0.1 0.42 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|327310145|ref|YP_004337042.1| - 6.4e-09 36.2 3.1 1.3e-08 35.2 3.1 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|327310145|ref|YP_004337042.1| - 2.6e-07 29.9 1.2 0.0037 16.2 0.4 2.6 2 1 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|327310145|ref|YP_004337042.1| - 1e-06 29.1 4.3 0.0015 18.8 4.3 2.6 1 1 0 1 1 1 1 AAA domain T4SS-DNA_transf PF02534.14 gi|327310145|ref|YP_004337042.1| - 2.6e-05 23.2 1.7 0.024 13.4 0.5 2.1 2 0 0 2 2 2 2 Type IV secretory system Conjugative DNA transfer AAA_14 PF13173.6 gi|327310145|ref|YP_004337042.1| - 7.5e-05 22.8 3.8 0.004 17.2 0.2 2.7 2 1 0 2 2 2 1 AAA domain TraG-D_C PF12696.7 gi|327310145|ref|YP_004337042.1| - 0.00041 20.3 0.2 0.00082 19.4 0.1 1.6 2 0 0 2 2 1 1 TraM recognition site of TraD and TraG AAA_18 PF13238.6 gi|327310145|ref|YP_004337042.1| - 0.00047 20.7 0.2 0.0012 19.4 0.1 1.7 1 1 1 2 2 2 1 AAA domain IPT PF01745.16 gi|327310145|ref|YP_004337042.1| - 0.0065 15.9 0.6 0.024 14.1 0.1 1.9 2 0 0 2 2 2 1 Isopentenyl transferase ATPase_2 PF01637.18 gi|327310145|ref|YP_004337042.1| - 0.008 16.1 9.9 0.27 11.1 9.9 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|327310145|ref|YP_004337042.1| - 0.012 15.4 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain CobU PF02283.16 gi|327310145|ref|YP_004337042.1| - 0.017 14.7 0.9 0.047 13.2 0.1 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase RecA PF00154.21 gi|327310145|ref|YP_004337042.1| - 0.021 14.3 0.3 0.046 13.2 0.0 1.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein TniB PF05621.11 gi|327310145|ref|YP_004337042.1| - 0.022 14.2 1.0 1.2 8.6 0.0 2.8 3 0 0 3 3 3 0 Bacterial TniB protein AAA_16 PF13191.6 gi|327310145|ref|YP_004337042.1| - 0.036 14.5 0.0 0.1 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain PduV-EutP PF10662.9 gi|327310145|ref|YP_004337042.1| - 0.044 13.5 0.7 0.081 12.7 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|327310145|ref|YP_004337042.1| - 0.057 13.8 3.0 0.073 13.5 0.3 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|327310145|ref|YP_004337042.1| - 0.08 12.9 0.5 2.2 8.2 0.1 2.2 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|327310145|ref|YP_004337042.1| - 0.082 13.1 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|327310145|ref|YP_004337042.1| - 0.085 12.3 0.8 13 5.1 0.2 2.5 2 0 0 2 2 2 0 PhoH-like protein ABC_tran PF00005.27 gi|327310145|ref|YP_004337042.1| - 0.1 13.1 0.2 0.33 11.5 0.2 1.7 1 1 0 1 1 1 0 ABC transporter Peptidase_M48 PF01435.18 gi|327310148|ref|YP_004337045.1| - 2.4e-13 50.3 0.1 3.7e-13 49.7 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 T2SSF PF00482.23 gi|327310149|ref|YP_004337046.1| - 0.013 15.5 1.0 0.1 12.6 0.5 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F TIMELESS PF04821.14 gi|327310149|ref|YP_004337046.1| - 0.089 12.0 0.1 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Timeless protein FYVE PF01363.21 gi|327310150|ref|YP_004337047.1| - 0.00023 21.2 2.3 0.00025 21.1 2.3 1.1 1 0 0 1 1 1 1 FYVE zinc finger DUF1272 PF06906.11 gi|327310150|ref|YP_004337047.1| - 0.00059 19.9 1.2 0.0007 19.6 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) C1_1 PF00130.22 gi|327310150|ref|YP_004337047.1| - 0.0021 17.9 1.2 0.0027 17.6 1.2 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-RING_5 PF14634.6 gi|327310150|ref|YP_004337047.1| - 0.0029 17.5 5.5 0.0041 17.1 5.5 1.2 1 0 0 1 1 1 1 zinc-RING finger domain zf-HIT PF04438.16 gi|327310150|ref|YP_004337047.1| - 0.0075 16.1 1.5 0.0075 16.1 1.5 2.9 1 1 0 2 2 2 1 HIT zinc finger Prok-RING_4 PF14447.6 gi|327310150|ref|YP_004337047.1| - 0.011 15.6 1.7 0.018 14.9 1.7 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 Nudix_N_2 PF14803.6 gi|327310150|ref|YP_004337047.1| - 0.015 15.2 4.0 0.27 11.2 0.2 2.7 2 1 0 2 2 2 0 Nudix N-terminal C1_2 PF03107.16 gi|327310150|ref|YP_004337047.1| - 0.032 14.6 8.3 0.27 11.6 1.3 2.1 1 1 1 2 2 2 0 C1 domain zinc-ribbons_6 PF07191.12 gi|327310150|ref|YP_004337047.1| - 0.036 14.0 2.6 0.24 11.4 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbons DUF35_N PF12172.8 gi|327310150|ref|YP_004337047.1| - 0.04 13.8 0.4 0.04 13.8 0.4 2.4 3 1 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|327310150|ref|YP_004337047.1| - 0.057 13.5 4.9 0.43 10.6 4.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_2 PF13923.6 gi|327310150|ref|YP_004337047.1| - 0.24 11.3 6.4 1.4 8.8 6.4 2.0 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Ribosomal_L37e PF01907.19 gi|327310150|ref|YP_004337047.1| - 0.56 10.4 7.3 0.6 10.3 2.6 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|327310150|ref|YP_004337047.1| - 0.85 9.2 5.9 0.6 9.7 1.9 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.6 gi|327310150|ref|YP_004337047.1| - 2 9.0 11.4 10 6.7 3.3 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain NTP_transferase PF00483.23 gi|327310152|ref|YP_004337049.1| - 4.5e-43 147.6 0.0 5.4e-43 147.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|327310152|ref|YP_004337049.1| - 3.6e-14 51.8 6.1 3.4e-06 26.6 0.2 4.0 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|327310152|ref|YP_004337049.1| - 3.2e-10 40.6 0.1 4.6e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF4310 PF14187.6 gi|327310153|ref|YP_004337050.1| - 0.025 14.2 0.9 1.2 8.7 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4310) HIT PF01230.23 gi|327310155|ref|YP_004337052.1| - 2.8e-12 47.2 0.0 3.7e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|327310155|ref|YP_004337052.1| - 0.00076 19.9 0.0 0.001 19.5 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|327310155|ref|YP_004337052.1| - 0.2 11.6 0.0 0.46 10.4 0.0 1.7 1 1 1 2 2 2 0 Protein similar to CwfJ C-terminus 1 AAA_15 PF13175.6 gi|327310156|ref|YP_004337053.1| - 5.9e-06 26.2 0.0 8.8e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|327310156|ref|YP_004337053.1| - 0.00072 19.2 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|327310156|ref|YP_004337053.1| - 0.0028 17.5 0.0 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327310156|ref|YP_004337053.1| - 0.0037 16.7 0.0 1.1 8.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|327310156|ref|YP_004337053.1| - 0.0047 17.2 0.0 0.55 10.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|327310156|ref|YP_004337053.1| - 0.037 14.6 0.0 0.069 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|327310156|ref|YP_004337053.1| - 0.043 14.3 0.0 0.31 11.5 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|327310156|ref|YP_004337053.1| - 0.045 14.1 0.0 0.47 10.8 0.0 2.5 2 1 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|327310156|ref|YP_004337053.1| - 0.054 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|327310156|ref|YP_004337053.1| - 0.055 13.0 0.0 0.15 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|327310156|ref|YP_004337053.1| - 0.073 13.0 0.0 11 5.9 0.0 2.3 2 0 0 2 2 2 0 NACHT domain DUF2813 PF11398.8 gi|327310156|ref|YP_004337053.1| - 0.092 12.0 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) Mg_chelatase PF01078.21 gi|327310156|ref|YP_004337053.1| - 0.1 11.9 0.0 0.55 9.6 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI FeoB_N PF02421.18 gi|327310156|ref|YP_004337053.1| - 0.17 11.4 0.0 0.43 10.1 0.0 1.6 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_23 PF13476.6 gi|327310156|ref|YP_004337053.1| - 0.19 12.2 0.0 0.34 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIN_9 PF18477.1 gi|327310157|ref|YP_004337054.1| - 1.5e-07 31.8 0.1 2.2e-07 31.2 0.1 1.3 1 1 0 1 1 1 1 PIN like domain PIN PF01850.21 gi|327310157|ref|YP_004337054.1| - 0.00023 21.7 0.1 0.0009 19.7 0.1 1.7 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|327310157|ref|YP_004337054.1| - 0.035 14.4 0.0 0.04 14.2 0.0 1.3 1 1 0 1 1 1 0 PIN domain XPG_I_2 PF12813.7 gi|327310157|ref|YP_004337054.1| - 0.053 13.0 0.0 0.057 12.9 0.0 1.1 1 0 0 1 1 1 0 XPG domain containing PIN_6 PF17146.4 gi|327310157|ref|YP_004337054.1| - 0.099 13.2 0.1 0.16 12.5 0.1 1.5 1 1 0 1 1 1 0 PIN domain of ribonuclease SHS2_Rpb7-N PF03876.17 gi|327310158|ref|YP_004337055.1| - 6.5e-16 58.5 0.0 1.1e-15 57.8 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|327310158|ref|YP_004337055.1| - 4.6e-06 26.9 0.6 8.5e-06 26.0 0.6 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|327310158|ref|YP_004337055.1| - 0.0019 18.4 0.1 0.051 13.8 0.0 2.1 1 1 1 2 2 2 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|327310159|ref|YP_004337056.1| - 2.5e-17 62.7 0.2 3.1e-17 62.4 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger UPF0547 PF10571.9 gi|327310159|ref|YP_004337056.1| - 0.00021 21.3 3.4 0.00033 20.7 3.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|327310159|ref|YP_004337056.1| - 0.0004 19.8 0.8 0.0044 16.5 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.7 gi|327310159|ref|YP_004337056.1| - 0.00078 19.4 1.0 0.00086 19.3 1.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|327310159|ref|YP_004337056.1| - 0.0019 18.9 1.2 0.0024 18.6 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|327310159|ref|YP_004337056.1| - 0.0031 17.2 2.9 0.0054 16.4 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|327310159|ref|YP_004337056.1| - 0.018 14.4 4.7 0.035 13.5 4.7 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_4 PF14570.6 gi|327310159|ref|YP_004337056.1| - 0.019 14.8 1.3 0.03 14.1 1.3 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain HypA PF01155.19 gi|327310159|ref|YP_004337056.1| - 0.024 14.7 0.5 0.029 14.4 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|327310159|ref|YP_004337056.1| - 0.064 13.1 0.8 0.11 12.4 0.8 1.4 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HTH_22 PF13309.6 gi|327310159|ref|YP_004337056.1| - 0.08 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 HTH domain NRDD PF13597.6 gi|327310159|ref|YP_004337056.1| - 0.12 11.1 0.2 0.14 10.9 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF3797 PF12677.7 gi|327310159|ref|YP_004337056.1| - 0.17 11.8 0.3 0.17 11.8 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Zn-ribbon_8 PF09723.10 gi|327310159|ref|YP_004337056.1| - 1.7 8.8 5.6 6.9 6.9 5.6 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF4093 PF13331.6 gi|327310160|ref|YP_004337057.1| - 0.045 14.2 0.1 0.087 13.3 0.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4093) EKAL PF17986.1 gi|327310160|ref|YP_004337057.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 EMP3-KAHRP-like N-terminal domain SIS PF01380.22 gi|327310161|ref|YP_004337058.1| - 9.3e-47 158.2 1.1 6.5e-27 94.0 1.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|327310161|ref|YP_004337058.1| - 5.3e-26 91.4 0.0 1.2e-25 90.3 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|327310161|ref|YP_004337058.1| - 4.2e-20 71.9 0.0 7.9e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|327310161|ref|YP_004337058.1| - 7.8e-06 26.0 0.3 9.9e-05 22.4 0.1 2.5 3 0 0 3 3 3 1 SIS domain GATase_4 PF13230.6 gi|327310161|ref|YP_004337058.1| - 6e-05 22.1 0.0 8.8e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.9 gi|327310161|ref|YP_004337058.1| - 0.003 17.6 1.3 0.041 13.9 0.1 3.1 3 1 0 3 3 3 1 Bacterial phospho-glucose isomerase C-terminal SIS domain Hexapep PF00132.24 gi|327310162|ref|YP_004337059.1| - 3.7e-12 45.4 11.3 0.00029 20.5 0.3 6.2 3 1 4 7 7 7 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|327310162|ref|YP_004337059.1| - 5.8e-06 26.0 4.0 1.3 8.9 0.0 4.7 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase 4HBT PF03061.22 gi|327310163|ref|YP_004337060.1| - 1.2e-25 89.6 2.2 1.1e-11 44.9 0.4 2.5 2 0 0 2 2 2 2 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|327310163|ref|YP_004337060.1| - 0.00052 19.6 0.1 0.01 15.4 0.1 2.4 2 1 0 2 2 2 1 MaoC like domain 4HBT_2 PF13279.6 gi|327310163|ref|YP_004337060.1| - 0.0007 20.1 0.0 0.051 14.1 0.0 2.1 2 0 0 2 2 2 1 Thioesterase-like superfamily MaoC_dehydrat_N PF13452.6 gi|327310163|ref|YP_004337060.1| - 0.087 13.0 0.0 6 7.0 0.0 2.2 2 0 0 2 2 2 0 N-terminal half of MaoC dehydratase DeoC PF01791.9 gi|327310164|ref|YP_004337061.1| - 6.4e-22 78.3 2.0 7.1e-21 74.9 1.9 1.9 1 1 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|327310164|ref|YP_004337061.1| - 0.044 13.0 0.6 0.078 12.2 0.6 1.4 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase PHO4 PF01384.20 gi|327310165|ref|YP_004337062.1| - 8 5.4 19.2 1.1e+02 1.7 19.1 2.8 1 1 0 1 1 1 0 Phosphate transporter family SRP54 PF00448.22 gi|327310166|ref|YP_004337063.1| - 2.7e-64 216.4 0.6 3.8e-64 215.9 0.6 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|327310166|ref|YP_004337063.1| - 2.6e-25 88.9 0.1 1.4e-24 86.5 0.1 2.3 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|327310166|ref|YP_004337063.1| - 3e-09 37.0 0.3 1.4e-08 34.8 0.0 2.4 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|327310166|ref|YP_004337063.1| - 4.2e-05 23.6 0.0 9.3e-05 22.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|327310166|ref|YP_004337063.1| - 0.00046 20.6 0.3 0.0025 18.2 0.2 2.2 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.6 gi|327310166|ref|YP_004337063.1| - 0.0015 18.4 0.6 0.026 14.5 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|327310166|ref|YP_004337063.1| - 0.002 17.9 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|327310166|ref|YP_004337063.1| - 0.002 17.2 0.6 0.0069 15.4 0.6 1.9 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|327310166|ref|YP_004337063.1| - 0.0025 18.1 0.1 0.013 15.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|327310166|ref|YP_004337063.1| - 0.0032 17.5 0.0 0.0097 16.0 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase MipZ PF09140.11 gi|327310166|ref|YP_004337063.1| - 0.0034 16.7 0.2 0.19 10.9 0.1 2.4 1 1 1 2 2 2 1 ATPase MipZ Zeta_toxin PF06414.12 gi|327310166|ref|YP_004337063.1| - 0.0035 16.6 0.1 0.012 14.9 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin APS_kinase PF01583.20 gi|327310166|ref|YP_004337063.1| - 0.0043 17.0 0.0 0.011 15.6 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase cobW PF02492.19 gi|327310166|ref|YP_004337063.1| - 0.008 15.8 3.0 0.25 10.9 3.0 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|327310166|ref|YP_004337063.1| - 0.011 15.6 0.1 0.045 13.6 0.1 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|327310166|ref|YP_004337063.1| - 0.011 16.1 0.3 0.043 14.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|327310166|ref|YP_004337063.1| - 0.013 15.7 0.0 0.03 14.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|327310166|ref|YP_004337063.1| - 0.018 14.2 0.0 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit ParA PF10609.9 gi|327310166|ref|YP_004337063.1| - 0.027 13.9 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase PFOR_II PF17147.4 gi|327310166|ref|YP_004337063.1| - 0.034 14.5 0.2 0.2 12.0 0.0 2.4 2 1 1 3 3 2 0 Pyruvate:ferredoxin oxidoreductase core domain II AAA_25 PF13481.6 gi|327310166|ref|YP_004337063.1| - 0.082 12.5 1.3 0.8 9.2 1.3 2.4 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|327310166|ref|YP_004337063.1| - 0.095 12.4 0.3 0.44 10.2 0.1 2.2 2 0 0 2 2 2 0 Thymidylate kinase ABC_tran PF00005.27 gi|327310166|ref|YP_004337063.1| - 0.15 12.6 0.1 1.2 9.7 0.0 2.4 2 1 0 2 2 2 0 ABC transporter Bap31_Bap29_C PF18035.1 gi|327310166|ref|YP_004337063.1| - 6.1 6.9 5.9 1 9.4 1.0 2.2 2 0 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain Methyltrn_RNA_2 PF04013.12 gi|327310167|ref|YP_004337064.1| - 1.6e-05 24.7 0.0 2.3e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.17 gi|327310168|ref|YP_004337065.1| - 4.7e-10 39.7 0.1 9.4e-10 38.8 0.1 1.6 1 0 0 1 1 1 1 THUMP domain OCD_Mu_crystall PF02423.15 gi|327310169|ref|YP_004337066.1| - 1.5e-58 198.2 1.7 2e-58 197.9 1.7 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|327310169|ref|YP_004337066.1| - 5.2e-07 29.8 0.0 1.1e-06 28.7 0.0 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|327310169|ref|YP_004337066.1| - 0.061 13.9 0.2 0.22 12.1 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|327310169|ref|YP_004337066.1| - 0.079 13.8 0.0 0.2 12.5 0.0 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DUF981 PF06168.11 gi|327310170|ref|YP_004337067.1| - 4.4e-47 160.4 19.1 5e-47 160.2 19.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) ASC PF00858.24 gi|327310170|ref|YP_004337067.1| - 0.34 9.8 0.7 0.41 9.6 0.7 1.1 1 0 0 1 1 1 0 Amiloride-sensitive sodium channel ThiI PF02568.14 gi|327310171|ref|YP_004337068.1| - 1.5e-53 181.3 0.0 2.2e-53 180.8 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|327310171|ref|YP_004337068.1| - 2.3e-19 69.9 0.2 1.2e-18 67.6 0.0 2.2 2 1 1 3 3 3 1 THUMP domain Rhodanese PF00581.20 gi|327310171|ref|YP_004337068.1| - 4.5e-09 36.8 0.2 3.6e-08 33.9 0.0 2.4 3 0 0 3 3 3 1 Rhodanese-like domain QueC PF06508.13 gi|327310171|ref|YP_004337068.1| - 7.6e-05 22.3 0.0 0.2 11.1 0.0 2.3 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|327310171|ref|YP_004337068.1| - 0.089 11.6 0.1 0.17 10.6 0.1 1.4 1 0 0 1 1 1 0 tRNA methyl transferase DUF3243 PF11588.8 gi|327310171|ref|YP_004337068.1| - 0.18 12.1 0.0 4.9 7.5 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) ABC_membrane PF00664.23 gi|327310172|ref|YP_004337069.1| - 1.3e-46 159.5 1.6 1.6e-46 159.1 1.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|327310172|ref|YP_004337069.1| - 3.4e-34 118.3 0.0 5.6e-34 117.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter DUF1854 PF08909.11 gi|327310172|ref|YP_004337069.1| - 1.8e-20 73.1 0.0 3.3e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1854) Gtr1_RagA PF04670.12 gi|327310172|ref|YP_004337069.1| - 0.00093 18.6 0.0 0.041 13.2 0.0 2.3 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Zeta_toxin PF06414.12 gi|327310172|ref|YP_004337069.1| - 0.0036 16.6 0.0 0.0091 15.3 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin SMC_N PF02463.19 gi|327310172|ref|YP_004337069.1| - 0.0042 16.6 0.0 0.39 10.1 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|327310172|ref|YP_004337069.1| - 0.011 15.5 0.2 2.2 8.0 0.1 2.3 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|327310172|ref|YP_004337069.1| - 0.013 15.9 0.0 0.051 13.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|327310172|ref|YP_004337069.1| - 0.027 14.9 0.0 0.12 12.8 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|327310172|ref|YP_004337069.1| - 0.028 14.8 0.0 0.065 13.6 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|327310172|ref|YP_004337069.1| - 0.038 13.5 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_15 PF13175.6 gi|327310172|ref|YP_004337069.1| - 0.041 13.6 0.0 0.059 13.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|327310172|ref|YP_004337069.1| - 0.049 13.9 0.0 0.19 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|327310172|ref|YP_004337069.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|327310172|ref|YP_004337069.1| - 0.076 13.0 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Roc PF08477.13 gi|327310172|ref|YP_004337069.1| - 0.16 12.2 0.0 0.49 10.6 0.0 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|327310172|ref|YP_004337069.1| - 0.17 11.6 0.0 0.37 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|327310172|ref|YP_004337069.1| - 0.18 10.9 0.0 0.29 10.3 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit ABC_membrane_3 PF13748.6 gi|327310172|ref|YP_004337069.1| - 0.4 9.9 5.9 0.29 10.3 0.1 2.6 3 0 0 3 3 3 0 ABC transporter transmembrane region MFS_1 PF07690.16 gi|327310173|ref|YP_004337070.1| - 8.2e-31 107.2 72.7 8.2e-31 107.2 72.7 3.5 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF4244 PF14029.6 gi|327310173|ref|YP_004337070.1| - 9.4 5.8 8.8 1.3 8.5 1.6 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4244) GFO_IDH_MocA PF01408.22 gi|327310175|ref|YP_004337072.1| - 2.7e-17 63.7 0.3 4e-17 63.2 0.3 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|327310175|ref|YP_004337072.1| - 4.1e-06 26.8 0.0 7.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.12 gi|327310175|ref|YP_004337072.1| - 0.0083 15.7 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_3 PF03447.16 gi|327310175|ref|YP_004337072.1| - 0.094 13.4 0.4 0.2 12.3 0.4 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|327310175|ref|YP_004337072.1| - 0.1 13.2 0.0 0.21 12.2 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|327310175|ref|YP_004337072.1| - 0.13 11.7 1.2 1.1 8.7 0.0 2.0 1 1 1 2 2 2 0 short chain dehydrogenase MCR_beta_N PF02783.15 gi|327310175|ref|YP_004337072.1| - 0.14 11.7 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 Methyl-coenzyme M reductase beta subunit, N-terminal domain Aminotran_3 PF00202.21 gi|327310176|ref|YP_004337073.1| - 1.1e-98 330.6 0.0 1.4e-98 330.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III CN_hydrolase PF00795.22 gi|327310178|ref|YP_004337075.1| - 3.8e-27 95.3 0.0 4.4e-27 95.1 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase NAD_synthase PF02540.17 gi|327310179|ref|YP_004337076.1| - 4.5e-76 255.2 0.0 5.2e-76 255.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|327310179|ref|YP_004337076.1| - 3.8e-06 26.8 0.0 6.1e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Asparagine synthase Sigma70_r4 PF04545.16 gi|327310179|ref|YP_004337076.1| - 8.3e-05 22.0 0.1 0.0011 18.4 0.1 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 tRNA_Me_trans PF03054.16 gi|327310179|ref|YP_004337076.1| - 0.00039 19.3 0.0 0.017 13.9 0.0 2.4 3 0 0 3 3 3 1 tRNA methyl transferase ThiI PF02568.14 gi|327310179|ref|YP_004337076.1| - 0.02 14.5 0.0 0.03 13.9 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Sigma70_r4_2 PF08281.12 gi|327310179|ref|YP_004337076.1| - 0.022 14.5 0.6 0.092 12.4 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|327310179|ref|YP_004337076.1| - 0.043 13.6 3.0 1.1 9.1 0.0 4.0 4 2 0 4 4 4 0 Homeodomain-like domain QueC PF06508.13 gi|327310179|ref|YP_004337076.1| - 0.12 11.9 0.0 0.38 10.2 0.0 2.0 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC GATase_6 PF13522.6 gi|327310180|ref|YP_004337077.1| - 7.5e-13 48.8 0.0 1.4e-12 47.9 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|327310180|ref|YP_004337077.1| - 1.8e-06 27.1 0.0 1.7e-05 23.8 0.0 2.1 2 1 0 2 2 2 1 Glutamine amidotransferases class-II Gln-synt_C PF00120.24 gi|327310181|ref|YP_004337078.1| - 3.5e-96 322.2 0.0 4.8e-96 321.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|327310181|ref|YP_004337078.1| - 5.8e-10 38.8 0.0 1.1e-09 37.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glu_synthase PF01645.17 gi|327310182|ref|YP_004337079.1| - 3.9e-97 325.7 2.1 4.7e-91 305.7 0.2 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|327310182|ref|YP_004337079.1| - 5.1e-11 42.2 5.9 0.0039 16.3 0.1 3.6 3 1 0 3 3 3 3 FMN-dependent dehydrogenase Glu_syn_central PF04898.14 gi|327310182|ref|YP_004337079.1| - 2.5e-09 37.0 0.1 0.01 15.3 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain IMPDH PF00478.25 gi|327310182|ref|YP_004337079.1| - 0.096 11.7 5.1 2.4 7.1 2.6 2.8 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|327310182|ref|YP_004337079.1| - 3.3 7.0 6.4 9.9 5.4 4.0 2.5 2 1 0 2 2 2 0 Nitronate monooxygenase Pyr_redox_2 PF07992.14 gi|327310183|ref|YP_004337080.1| - 5.4e-57 193.3 3.1 7.3e-57 192.8 3.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|327310183|ref|YP_004337080.1| - 3.7e-29 101.2 1.2 3.8e-29 101.2 0.1 1.6 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|327310183|ref|YP_004337080.1| - 3.2e-18 66.1 1.1 3.2e-18 66.1 1.1 3.0 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|327310183|ref|YP_004337080.1| - 1.7e-15 57.1 4.3 6.7e-13 48.5 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|327310183|ref|YP_004337080.1| - 1.8e-11 43.8 1.3 0.00015 21.0 0.0 3.3 3 0 0 3 3 3 3 Glucose inhibited division protein A DAO PF01266.24 gi|327310183|ref|YP_004337080.1| - 3.5e-07 30.1 11.6 0.056 13.0 1.6 3.4 2 1 1 3 3 3 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|327310183|ref|YP_004337080.1| - 4.8e-07 29.9 4.8 0.0036 17.5 1.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|327310183|ref|YP_004337080.1| - 6.9e-06 25.5 3.4 0.0021 17.3 0.3 2.4 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|327310183|ref|YP_004337080.1| - 7.2e-06 25.6 7.3 0.0011 18.5 0.1 3.2 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|327310183|ref|YP_004337080.1| - 2.3e-05 23.7 13.0 2.3e-05 23.7 0.9 3.9 3 1 1 4 4 4 1 FAD binding domain HI0933_like PF03486.14 gi|327310183|ref|YP_004337080.1| - 6.5e-05 21.8 10.1 0.0042 15.8 0.4 3.2 2 1 1 3 3 3 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|327310183|ref|YP_004337080.1| - 0.00011 21.6 7.8 0.028 13.7 0.3 2.5 2 1 0 2 2 2 2 FAD binding domain ThiF PF00899.21 gi|327310183|ref|YP_004337080.1| - 0.00032 20.1 0.8 0.027 13.8 0.1 2.5 2 0 0 2 2 2 1 ThiF family Amino_oxidase PF01593.24 gi|327310183|ref|YP_004337080.1| - 0.001 18.5 0.1 0.015 14.6 0.0 2.5 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|327310183|ref|YP_004337080.1| - 0.0078 15.8 0.3 0.0078 15.8 0.3 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PALP PF00291.25 gi|327310183|ref|YP_004337080.1| - 0.062 12.7 0.1 0.76 9.1 0.0 2.1 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.19 gi|327310183|ref|YP_004337080.1| - 0.073 12.4 0.5 1 8.7 0.1 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|327310183|ref|YP_004337080.1| - 0.22 12.0 1.0 14 6.2 0.3 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|327310183|ref|YP_004337080.1| - 0.27 10.2 6.7 1.5 7.8 0.8 2.7 2 1 1 3 3 3 0 Lycopene cyclase protein TrkA_N PF02254.18 gi|327310183|ref|YP_004337080.1| - 1.1 9.6 4.9 14 6.0 0.4 3.0 2 1 0 2 2 2 0 TrkA-N domain Trp_halogenase PF04820.14 gi|327310183|ref|YP_004337080.1| - 1.6 7.5 4.0 2.7 6.7 0.7 2.1 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|327310183|ref|YP_004337080.1| - 1.8 8.4 5.6 0.78 9.6 0.3 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GXGXG PF01493.19 gi|327310184|ref|YP_004337081.1| - 7.2e-22 77.9 15.0 1.4e-21 77.0 15.0 1.4 1 0 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|327310184|ref|YP_004337081.1| - 5.6e-10 39.5 0.0 1.1e-09 38.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|327310184|ref|YP_004337081.1| - 0.00023 21.0 0.0 0.00045 20.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF2807 PF10988.8 gi|327310184|ref|YP_004337081.1| - 0.009 15.8 0.6 0.016 15.0 0.6 1.4 1 0 0 1 1 1 1 Putative auto-transporter adhesin, head GIN domain PadR PF03551.14 gi|327310185|ref|YP_004337082.1| - 2e-21 75.7 0.4 3.6e-21 74.9 0.4 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|327310185|ref|YP_004337082.1| - 2.8e-10 40.2 0.1 1.2e-09 38.2 0.0 1.9 2 1 1 3 3 3 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|327310185|ref|YP_004337082.1| - 0.0018 18.2 0.2 0.0056 16.6 0.1 1.9 1 1 0 2 2 2 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|327310185|ref|YP_004337082.1| - 0.0023 17.7 0.1 22 5.0 0.0 3.5 3 1 1 4 4 4 0 Bacterial regulatory protein, arsR family RTP PF02334.16 gi|327310185|ref|YP_004337082.1| - 0.0061 17.2 0.1 0.0091 16.6 0.1 1.4 1 1 0 1 1 1 1 Replication terminator protein Mrr_N PF14338.6 gi|327310185|ref|YP_004337082.1| - 0.011 15.9 0.5 0.48 10.6 0.1 2.8 3 1 0 3 3 3 0 Mrr N-terminal domain SMK-1 PF04802.15 gi|327310185|ref|YP_004337082.1| - 0.012 15.4 0.1 0.016 15.1 0.1 1.1 1 0 0 1 1 1 0 Component of IIS longevity pathway SMK-1 DUF3116 PF11313.8 gi|327310185|ref|YP_004337082.1| - 0.021 14.7 1.7 0.034 14.0 1.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) TrmB PF01978.19 gi|327310185|ref|YP_004337082.1| - 0.034 14.0 0.6 0.3 11.0 0.6 2.2 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|327310185|ref|YP_004337082.1| - 0.034 13.9 0.7 0.072 12.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4364) OSCP PF00213.18 gi|327310185|ref|YP_004337082.1| - 0.035 14.2 0.1 0.048 13.8 0.1 1.2 1 0 0 1 1 1 0 ATP synthase delta (OSCP) subunit HxlR PF01638.17 gi|327310185|ref|YP_004337082.1| - 0.078 12.8 0.3 0.35 10.8 0.2 2.1 2 1 0 2 2 2 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|327310185|ref|YP_004337082.1| - 0.12 12.9 0.1 0.36 11.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain NPCBM_assoc PF10633.9 gi|327310186|ref|YP_004337083.1| - 3e-15 56.2 27.1 0.00081 19.6 0.1 7.6 8 0 0 8 8 8 5 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|327310186|ref|YP_004337083.1| - 7.3e-05 23.0 2.4 7.3e-05 23.0 2.4 5.7 6 3 0 6 6 6 1 Domain of unknown function DUF11 CARDB PF07705.11 gi|327310186|ref|YP_004337083.1| - 0.00058 20.1 6.4 6.4 7.1 0.0 5.7 5 0 0 5 5 5 2 CARDB Alpha_adaptinC2 PF02883.20 gi|327310186|ref|YP_004337083.1| - 0.0097 16.2 1.7 0.4 11.0 0.1 3.4 3 0 0 3 3 3 1 Adaptin C-terminal domain Ig_GlcNase PF18368.1 gi|327310186|ref|YP_004337083.1| - 0.06 13.5 0.0 0.27 11.4 0.0 2.1 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain DUF3324 PF11797.8 gi|327310186|ref|YP_004337083.1| - 0.062 13.3 0.0 0.4 10.7 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function C-terminal (DUF3324) Gram_pos_anchor PF00746.21 gi|327310186|ref|YP_004337083.1| - 0.063 13.2 0.5 0.24 11.4 0.5 2.0 1 0 0 1 1 1 0 LPXTG cell wall anchor motif E1_DerP2_DerF2 PF02221.15 gi|327310186|ref|YP_004337083.1| - 0.22 11.9 3.7 1.1e+02 3.2 0.1 4.8 4 1 0 4 4 4 0 ML domain NitrOD2 PF18550.1 gi|327310188|ref|YP_004337085.1| - 0.0001 22.4 0.0 0.00029 20.9 0.0 1.7 2 0 0 2 2 2 1 Nitrososphaera output domain 2 TrmB PF01978.19 gi|327310188|ref|YP_004337085.1| - 0.0093 15.8 0.2 0.019 14.9 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DsrC PF04358.13 gi|327310189|ref|YP_004337086.1| - 1.5e-29 102.6 0.0 1.8e-29 102.4 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein DUF1641 PF07849.11 gi|327310190|ref|YP_004337087.1| - 5.7e-16 58.1 1.1 5.9e-13 48.5 0.0 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF1641) eIF-1a PF01176.19 gi|327310191|ref|YP_004337088.1| - 4.2e-22 77.7 0.3 5.1e-22 77.5 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Peptidase_S24 PF00717.23 gi|327310191|ref|YP_004337088.1| - 0.061 13.3 0.3 4.4 7.3 0.1 2.3 1 1 0 2 2 2 0 Peptidase S24-like Glu_synthase PF01645.17 gi|327310192|ref|YP_004337089.1| - 2.2e-22 79.7 7.5 2.7e-21 76.2 5.4 3.1 1 1 1 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|327310192|ref|YP_004337089.1| - 7.3e-20 71.3 4.4 2e-14 53.4 3.1 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|327310192|ref|YP_004337089.1| - 2.3e-09 37.1 0.8 3.7e-09 36.4 0.8 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Asparaginase_C PF17763.1 gi|327310192|ref|YP_004337089.1| - 0.14 12.4 0.2 7.8 6.8 0.0 2.5 1 1 1 2 2 2 0 Glutaminase/Asparaginase C-terminal domain tRNA-synt_2 PF00152.20 gi|327310194|ref|YP_004337091.1| - 4.6e-58 196.8 0.0 5.3e-58 196.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) HECW1_helix PF18436.1 gi|327310194|ref|YP_004337091.1| - 0.1 12.7 0.1 1.5 9.0 0.1 2.3 2 0 0 2 2 2 0 Helical box domain of E3 ubiquitin-protein ligase HECW1 DrsE_2 PF13686.6 gi|327310195|ref|YP_004337092.1| - 2.9e-17 63.0 0.7 1.9e-14 53.9 0.7 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|327310195|ref|YP_004337092.1| - 7.1e-10 39.3 0.0 1.4e-09 38.4 0.0 1.5 1 1 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|327310196|ref|YP_004337093.1| - 5.1e-21 74.3 0.0 5.7e-21 74.1 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.14 gi|327310197|ref|YP_004337094.1| - 2.7e-21 76.1 0.0 4.7e-21 75.3 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327310197|ref|YP_004337094.1| - 7.1e-06 26.5 0.0 0.059 13.9 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|327310197|ref|YP_004337094.1| - 0.0023 17.9 0.0 2.8 7.9 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|327310197|ref|YP_004337094.1| - 0.0066 15.5 0.0 1.8 7.5 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein DAO PF01266.24 gi|327310197|ref|YP_004337094.1| - 0.017 14.7 0.0 0.69 9.4 0.0 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|327310197|ref|YP_004337094.1| - 0.018 15.5 0.0 0.035 14.6 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain HI0933_like PF03486.14 gi|327310197|ref|YP_004337094.1| - 0.027 13.2 0.0 1.5 7.4 0.0 2.8 3 0 0 3 3 3 0 HI0933-like protein MASE2 PF05230.11 gi|327310197|ref|YP_004337094.1| - 0.058 13.5 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 MASE2 domain NAD_binding_8 PF13450.6 gi|327310197|ref|YP_004337094.1| - 0.09 13.0 0.0 0.36 11.1 0.0 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|327310197|ref|YP_004337094.1| - 0.11 11.7 0.0 0.28 10.4 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|327310197|ref|YP_004337094.1| - 0.11 11.7 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain GIDA PF01134.22 gi|327310197|ref|YP_004337094.1| - 0.14 11.2 0.3 0.53 9.3 0.0 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A ApbA PF02558.16 gi|327310197|ref|YP_004337094.1| - 0.16 11.6 0.0 0.41 10.3 0.0 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|327310197|ref|YP_004337094.1| - 0.17 11.0 0.0 4.3 6.4 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) DUF1641 PF07849.11 gi|327310198|ref|YP_004337095.1| - 0.00098 19.0 0.1 0.00098 19.0 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) CHAD PF05235.14 gi|327310198|ref|YP_004337095.1| - 0.16 11.9 2.8 0.95 9.4 2.8 2.1 1 1 0 1 1 1 0 CHAD domain SecM PF06558.12 gi|327310198|ref|YP_004337095.1| - 0.34 11.0 1.5 5.9 7.0 0.0 2.6 2 1 0 3 3 3 0 Secretion monitor precursor protein (SecM) GyrI-like PF06445.15 gi|327310199|ref|YP_004337096.1| - 1.8e-07 31.6 0.0 2.4e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|327310199|ref|YP_004337096.1| - 8.4e-05 22.8 0.1 0.00014 22.1 0.0 1.4 2 0 0 2 2 2 1 Integron-associated effector binding protein SfsA PF03749.13 gi|327310200|ref|YP_004337097.1| - 1.9e-34 118.6 0.0 3.3e-34 117.7 0.0 1.3 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|327310200|ref|YP_004337097.1| - 3.1e-14 52.9 0.2 5.6e-14 52.0 0.2 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain TadF PF16964.5 gi|327310201|ref|YP_004337098.1| - 0.12 12.2 1.2 0.13 12.0 0.0 1.7 2 0 0 2 2 2 0 Putative tight adherence pilin protein F AAA_assoc_C PF09821.9 gi|327310202|ref|YP_004337099.1| - 1.4e-12 48.2 0.1 2.6e-12 47.3 0.1 1.5 1 1 1 2 2 2 1 C-terminal AAA-associated domain BET PF17035.5 gi|327310202|ref|YP_004337099.1| - 0.18 12.0 0.3 2.2 8.5 0.1 2.1 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation THUMP PF02926.17 gi|327310203|ref|YP_004337100.1| - 5.7e-14 52.4 0.2 1.2e-13 51.3 0.2 1.6 1 1 0 1 1 1 1 THUMP domain Abhydrolase_1 PF00561.20 gi|327310204|ref|YP_004337101.1| - 2.6e-16 60.1 0.0 1e-09 38.4 0.0 2.0 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|327310204|ref|YP_004337101.1| - 3.8e-11 44.0 0.2 1.8e-06 28.8 0.1 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Methyltransf_11 PF08241.12 gi|327310205|ref|YP_004337102.1| - 1.3e-19 70.6 0.3 2.7e-19 69.6 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310205|ref|YP_004337102.1| - 4.4e-15 56.2 0.1 1.1e-14 54.9 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327310205|ref|YP_004337102.1| - 8.6e-14 52.1 0.1 1.3e-13 51.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|327310205|ref|YP_004337102.1| - 6.7e-13 48.7 0.0 1e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327310205|ref|YP_004337102.1| - 2.7e-10 40.3 0.0 4.7e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Nitro_FeMo-Co PF02579.17 gi|327310205|ref|YP_004337102.1| - 3.4e-10 40.1 0.2 3.4e-10 40.1 0.2 2.4 3 1 1 4 4 4 1 Dinitrogenase iron-molybdenum cofactor MTS PF05175.14 gi|327310205|ref|YP_004337102.1| - 3.9e-07 29.8 0.0 6.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|327310205|ref|YP_004337102.1| - 7.4e-06 25.5 0.1 1.8e-05 24.2 0.0 1.6 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 gi|327310205|ref|YP_004337102.1| - 3.6e-05 23.2 0.1 6.2e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 O-methyltransferase domain NodS PF05401.11 gi|327310205|ref|YP_004337102.1| - 6.1e-05 22.7 0.0 9.6e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_8 PF05148.15 gi|327310205|ref|YP_004337102.1| - 0.00014 21.8 0.2 0.00033 20.6 0.1 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase MetW PF07021.12 gi|327310205|ref|YP_004337102.1| - 0.0002 21.0 0.1 0.0003 20.4 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW ADH_zinc_N PF00107.26 gi|327310205|ref|YP_004337102.1| - 0.0047 16.9 1.1 0.46 10.5 0.1 2.4 2 1 0 2 2 2 1 Zinc-binding dehydrogenase PrmA PF06325.13 gi|327310205|ref|YP_004337102.1| - 0.0072 15.8 0.2 0.01 15.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TehB PF03848.14 gi|327310205|ref|YP_004337102.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|327310205|ref|YP_004337102.1| - 0.035 14.1 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.18 gi|327310205|ref|YP_004337102.1| - 0.043 14.1 0.0 1.4 9.2 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain Pterin_bind PF00809.22 gi|327310206|ref|YP_004337103.1| - 2.3e-57 194.5 0.0 3e-44 151.5 0.0 2.0 2 0 0 2 2 2 2 Pterin binding enzyme CdhD PF03599.16 gi|327310206|ref|YP_004337103.1| - 0.17 10.6 0.0 0.26 10.0 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit PikAIV_N PF18605.1 gi|327310206|ref|YP_004337103.1| - 0.86 9.2 3.2 0.9 9.2 0.1 2.4 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain Radical_SAM PF04055.21 gi|327310209|ref|YP_004337106.1| - 2.7e-25 89.7 0.1 5.7e-25 88.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|327310209|ref|YP_004337106.1| - 6.9e-15 54.9 0.0 1.3e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM_2 PF18693.1 gi|327310209|ref|YP_004337106.1| - 2.8e-05 24.2 0.2 0.00012 22.2 0.2 2.1 2 0 0 2 2 2 1 TRAM domain TRAM PF01938.20 gi|327310209|ref|YP_004337106.1| - 0.00018 21.4 0.4 0.00037 20.4 0.1 1.7 2 0 0 2 2 2 1 TRAM domain tRNA-synt_1g PF09334.11 gi|327310210|ref|YP_004337107.1| - 1e-152 508.5 0.0 1.2e-152 508.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|327310210|ref|YP_004337107.1| - 4.8e-11 41.6 0.6 1.1e-06 27.2 0.1 3.8 2 2 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|327310210|ref|YP_004337107.1| - 2.4e-08 34.1 0.1 4.5e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|327310210|ref|YP_004337107.1| - 1.7e-05 24.4 0.0 0.0031 16.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|327310210|ref|YP_004337107.1| - 0.14 12.2 3.4 0.28 11.3 3.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|327310210|ref|YP_004337107.1| - 7.5 6.8 7.3 40 4.5 0.9 3.7 3 0 0 3 3 3 0 C4-type zinc ribbon domain Prenyltransf PF01255.19 gi|327310211|ref|YP_004337108.1| - 5.9e-65 218.9 0.0 6.6e-65 218.8 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase tRNA_bind PF01588.20 gi|327310212|ref|YP_004337109.1| - 1.1e-26 92.8 0.0 1.2e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain HupF_HypC PF01455.18 gi|327310212|ref|YP_004337109.1| - 0.0089 16.2 0.1 0.013 15.6 0.1 1.4 1 0 0 1 1 1 1 HupF/HypC family Big_3_5 PF16640.5 gi|327310214|ref|YP_004337111.1| - 3e-18 65.8 26.0 0.00042 20.4 0.5 7.5 7 1 0 7 7 7 6 Bacterial Ig-like domain (group 3) PEGA PF08308.11 gi|327310214|ref|YP_004337111.1| - 0.00012 21.9 10.7 1.4 8.8 0.0 6.5 7 0 0 7 7 7 3 PEGA domain BiPBP_C PF06832.12 gi|327310214|ref|YP_004337111.1| - 0.00016 21.7 0.0 0.42 10.7 0.0 4.6 4 1 1 5 5 5 1 Penicillin-Binding Protein C-terminus Family SoxY PF13501.6 gi|327310214|ref|YP_004337111.1| - 0.055 13.7 0.1 0.21 11.8 0.1 2.0 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY DUF4397 PF14344.6 gi|327310214|ref|YP_004337111.1| - 0.093 13.5 11.5 12 6.7 0.8 5.9 5 1 1 6 6 6 0 Domain of unknown function (DUF4397) MG3 PF17791.1 gi|327310214|ref|YP_004337111.1| - 0.19 12.0 1.1 1.3 9.4 0.1 2.7 2 0 0 2 2 2 0 Macroglobulin domain MG3 LEA_2 PF03168.13 gi|327310214|ref|YP_004337111.1| - 0.29 11.7 2.9 0.62 10.6 0.5 3.0 3 1 1 4 4 4 0 Late embryogenesis abundant protein HAD_2 PF13419.6 gi|327310215|ref|YP_004337112.1| - 1.3e-12 48.2 0.0 1.7e-12 47.7 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|327310215|ref|YP_004337112.1| - 1.5e-09 38.5 0.0 2.2e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|327310215|ref|YP_004337112.1| - 3.8e-05 23.7 0.0 7.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|327310215|ref|YP_004337112.1| - 0.0018 18.3 0.0 0.11 12.6 0.0 2.4 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase CbiA PF01656.23 gi|327310216|ref|YP_004337113.1| - 4.2e-06 26.8 0.0 6e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|327310216|ref|YP_004337113.1| - 2.5e-05 24.3 0.0 5.2e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|327310216|ref|YP_004337113.1| - 0.00069 19.2 0.2 0.0016 17.9 0.1 1.7 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|327310216|ref|YP_004337113.1| - 0.011 15.2 1.9 0.058 12.8 2.1 1.9 1 1 1 2 2 2 0 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|327310216|ref|YP_004337113.1| - 0.045 12.9 0.2 0.11 11.6 0.2 1.8 1 0 0 1 1 1 0 Anion-transporting ATPase YtpI PF14007.6 gi|327310217|ref|YP_004337114.1| - 0.012 15.7 0.9 0.014 15.5 0.9 1.1 1 0 0 1 1 1 0 YtpI-like protein DUF4418 PF14387.6 gi|327310217|ref|YP_004337114.1| - 0.023 14.9 4.0 0.028 14.6 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF2207 PF09972.9 gi|327310217|ref|YP_004337114.1| - 0.028 13.2 0.1 0.028 13.2 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Nuc_sug_transp PF04142.15 gi|327310217|ref|YP_004337114.1| - 0.03 13.5 0.1 0.031 13.4 0.1 1.0 1 0 0 1 1 1 0 Nucleotide-sugar transporter gpUL132 PF11359.8 gi|327310217|ref|YP_004337114.1| - 0.34 10.4 0.2 0.36 10.3 0.2 1.0 1 0 0 1 1 1 0 Glycoprotein UL132 SLATT_6 PF18169.1 gi|327310217|ref|YP_004337114.1| - 0.46 10.1 2.0 0.51 9.9 2.0 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 SeqA_N PF17206.3 gi|327310219|ref|YP_004337116.1| - 0.042 13.2 0.0 0.17 11.2 0.0 2.0 2 0 0 2 2 2 0 SeqA protein N-terminal domain DDRGK PF09756.9 gi|327310219|ref|YP_004337116.1| - 0.068 12.8 0.0 0.17 11.4 0.0 1.6 1 1 0 1 1 1 0 DDRGK domain PhoU PF01895.19 gi|327310221|ref|YP_004337118.1| - 1.1e-11 45.1 6.1 1.5e-10 41.4 0.6 3.1 3 0 0 3 3 3 1 PhoU domain MazE_antitoxin PF04014.18 gi|327310221|ref|YP_004337118.1| - 3e-07 30.2 0.1 8.4e-07 28.8 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF1708 PF08101.11 gi|327310221|ref|YP_004337118.1| - 0.0054 15.9 0.0 0.0083 15.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1708) GAT PF03127.14 gi|327310221|ref|YP_004337118.1| - 0.041 14.2 1.0 0.13 12.6 0.1 2.0 2 0 0 2 2 2 0 GAT domain Peptidase_S49 PF01343.18 gi|327310221|ref|YP_004337118.1| - 0.058 13.3 0.1 0.24 11.4 0.0 1.9 1 1 1 2 2 2 0 Peptidase family S49 ArsD PF06953.11 gi|327310221|ref|YP_004337118.1| - 0.17 12.2 0.0 0.38 11.1 0.0 1.5 1 1 0 1 1 1 0 Arsenical resistance operon trans-acting repressor ArsD DUF1614 PF07758.11 gi|327310222|ref|YP_004337119.1| - 5.3e-45 153.5 13.6 8.7e-45 152.8 13.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) DMRL_synthase PF00885.19 gi|327310223|ref|YP_004337120.1| - 1.7e-07 31.2 0.1 2.3e-07 30.8 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase RHH_1 PF01402.21 gi|327310224|ref|YP_004337121.1| - 9.9e-07 28.5 0.1 3.5e-06 26.7 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|327310224|ref|YP_004337121.1| - 1.3e-06 28.4 0.1 5.5e-06 26.4 0.0 2.0 1 1 2 3 3 3 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|327310224|ref|YP_004337121.1| - 3.1e-05 23.8 0.0 9e-05 22.4 0.0 1.8 3 0 0 3 3 3 1 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 gi|327310224|ref|YP_004337121.1| - 0.01 15.9 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system HU-CCDC81_euk_2 PF18289.1 gi|327310224|ref|YP_004337121.1| - 0.011 15.8 0.1 0.19 11.9 0.1 2.1 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 RHH_5 PF07878.11 gi|327310224|ref|YP_004337121.1| - 0.044 13.7 0.1 0.086 12.7 0.1 1.5 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HTH_5 PF01022.20 gi|327310224|ref|YP_004337121.1| - 0.11 12.3 0.8 9.2 6.2 0.1 2.9 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family KORA PF16509.5 gi|327310224|ref|YP_004337121.1| - 0.14 12.4 0.1 0.42 10.9 0.1 1.9 1 1 0 1 1 1 0 TrfB plasmid transcriptional repressor CCG PF02754.16 gi|327310225|ref|YP_004337122.1| - 1.4e-09 38.1 0.0 2.9e-06 27.4 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|327310226|ref|YP_004337123.1| - 2.7e-13 50.2 5.2 3.4e-13 49.8 5.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310226|ref|YP_004337123.1| - 6.1e-11 42.3 3.3 9.6e-05 22.4 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327310226|ref|YP_004337123.1| - 8.9e-10 39.0 7.2 1.3e-09 38.5 7.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310226|ref|YP_004337123.1| - 1.8e-09 38.0 6.0 2.3e-09 37.7 6.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327310226|ref|YP_004337123.1| - 7.5e-09 35.4 8.9 0.0002 21.6 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|327310226|ref|YP_004337123.1| - 8.2e-08 32.0 12.9 0.00091 19.2 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|327310226|ref|YP_004337123.1| - 1.1e-07 31.9 5.6 2.4e-07 30.8 5.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327310226|ref|YP_004337123.1| - 1.6e-07 31.0 14.4 0.00072 19.5 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|327310226|ref|YP_004337123.1| - 5.8e-07 29.1 12.6 0.0014 18.3 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327310226|ref|YP_004337123.1| - 1.8e-06 28.0 6.1 0.0052 16.9 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|327310226|ref|YP_004337123.1| - 3.5e-05 24.6 4.3 0.031 15.1 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327310226|ref|YP_004337123.1| - 0.00017 22.5 10.5 0.0017 19.2 10.9 2.0 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|327310226|ref|YP_004337123.1| - 0.00088 19.5 8.0 0.026 14.7 0.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|327310226|ref|YP_004337123.1| - 0.029 15.3 15.9 0.15 13.1 3.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|327310226|ref|YP_004337123.1| - 0.38 11.3 10.6 2.9 8.5 1.2 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I c-SKI_SMAD_bind PF08782.10 gi|327310226|ref|YP_004337123.1| - 1.2 9.4 6.4 1.4 9.2 0.5 2.1 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Prok-JAB PF14464.6 gi|327310227|ref|YP_004337124.1| - 4.4e-14 52.3 0.0 5.2e-14 52.0 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peptidase_M24 PF00557.24 gi|327310228|ref|YP_004337125.1| - 8.4e-59 198.8 0.1 1.1e-58 198.4 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|327310228|ref|YP_004337125.1| - 2.7e-07 31.3 0.0 7.8e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain HSCB_C PF07743.13 gi|327310228|ref|YP_004337125.1| - 0.17 12.4 0.0 25 5.5 0.0 2.3 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain dUTPase PF00692.19 gi|327310229|ref|YP_004337126.1| - 3.1e-18 65.7 0.0 2.4e-17 62.8 0.0 1.9 2 0 0 2 2 2 1 dUTPase DCD PF06559.11 gi|327310229|ref|YP_004337126.1| - 0.01 14.6 0.0 0.073 11.8 0.0 2.5 1 1 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) ThiS PF02597.20 gi|327310231|ref|YP_004337128.1| - 4.6e-10 40.0 0.0 5.3e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|327310231|ref|YP_004337128.1| - 1.8e-07 31.4 0.0 2e-07 31.3 0.0 1.2 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) TrkA_C PF02080.21 gi|327310231|ref|YP_004337128.1| - 0.063 13.1 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 TrkA-C domain TGS PF02824.21 gi|327310231|ref|YP_004337128.1| - 0.15 12.1 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 TGS domain DNA_binding_1 PF01035.20 gi|327310232|ref|YP_004337129.1| - 1e-18 67.2 0.0 1.6e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Fer4_15 PF13459.6 gi|327310233|ref|YP_004337130.1| - 1.3e-09 38.7 0.0 1.8e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|327310233|ref|YP_004337130.1| - 2.8e-05 24.5 0.2 6.8e-05 23.3 0.2 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|327310233|ref|YP_004337130.1| - 3.4e-05 23.8 0.6 0.00027 20.9 0.6 2.0 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 gi|327310233|ref|YP_004337130.1| - 0.15 12.2 0.9 9.9 6.4 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Hydrolase_3 PF08282.12 gi|327310234|ref|YP_004337131.1| - 1.3e-11 44.8 0.2 1.8e-11 44.3 0.0 1.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|327310234|ref|YP_004337131.1| - 3.1e-07 31.0 0.7 5.3e-07 30.2 0.7 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|327310234|ref|YP_004337131.1| - 9.1e-07 29.4 0.9 0.0033 17.7 0.2 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|327310234|ref|YP_004337131.1| - 0.0063 16.6 0.1 0.033 14.3 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|327310234|ref|YP_004337131.1| - 0.087 12.9 0.0 0.72 10.0 0.0 2.1 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PEP-utilizers_C PF02896.18 gi|327310235|ref|YP_004337132.1| - 7.5e-80 268.2 0.0 1.1e-79 267.6 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|327310235|ref|YP_004337132.1| - 6.4e-53 180.1 0.0 2e-43 149.0 0.0 2.2 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|327310235|ref|YP_004337132.1| - 6e-26 90.0 1.4 1.4e-25 88.7 1.4 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain HEAT_EZ PF13513.6 gi|327310235|ref|YP_004337132.1| - 0.041 14.4 0.0 10 6.7 0.0 3.2 2 0 0 2 2 2 0 HEAT-like repeat Metallophos PF00149.28 gi|327310236|ref|YP_004337133.1| - 5e-20 72.9 0.0 7.5e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|327310236|ref|YP_004337133.1| - 0.00019 21.7 0.0 0.00053 20.2 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Radical_SAM PF04055.21 gi|327310238|ref|YP_004337135.1| - 1e-24 87.8 0.0 1.5e-23 84.0 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily zf-C4_Topoisom PF01396.19 gi|327310238|ref|YP_004337135.1| - 0.0048 16.6 1.4 2.1 8.2 0.3 2.5 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.11 gi|327310238|ref|YP_004337135.1| - 0.0062 16.2 2.3 0.094 12.4 0.1 2.5 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|327310238|ref|YP_004337135.1| - 0.0088 16.0 0.1 0.0088 16.0 0.1 2.6 3 0 0 3 3 3 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|327310238|ref|YP_004337135.1| - 0.017 14.8 11.6 0.2 11.4 0.4 3.0 3 0 0 3 3 3 0 zinc-ribbon domain PknG_rubred PF16919.5 gi|327310238|ref|YP_004337135.1| - 0.054 13.6 0.8 0.11 12.6 0.8 1.4 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain Fer4_12 PF13353.6 gi|327310238|ref|YP_004337135.1| - 0.17 12.2 0.0 0.29 11.4 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain DNA_ligase_ZBD PF03119.16 gi|327310238|ref|YP_004337135.1| - 0.32 11.1 4.4 0.94 9.6 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.9 gi|327310238|ref|YP_004337135.1| - 1.5 9.0 8.5 0.87 9.7 0.7 2.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|327310238|ref|YP_004337135.1| - 5.3 6.6 12.4 0.31 10.5 0.2 3.2 4 0 0 4 4 4 0 zinc-ribbon domain TatD_DNase PF01026.21 gi|327310239|ref|YP_004337136.1| - 1.6e-49 168.6 0.0 1.8e-49 168.4 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_2 PF04909.14 gi|327310239|ref|YP_004337136.1| - 0.00017 21.5 3.6 0.00027 20.8 0.6 2.5 1 1 1 2 2 2 1 Amidohydrolase BcrAD_BadFG PF01869.20 gi|327310240|ref|YP_004337137.1| - 2.4e-21 76.4 0.1 3.2e-21 76.0 0.1 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|327310240|ref|YP_004337137.1| - 2.6e-07 30.4 0.0 0.0019 17.8 0.0 2.1 2 0 0 2 2 2 2 ROK family Hydant_A_N PF05378.13 gi|327310240|ref|YP_004337137.1| - 0.13 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region SIS PF01380.22 gi|327310241|ref|YP_004337138.1| - 5.1e-34 116.9 1.2 9e-22 77.3 0.3 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|327310241|ref|YP_004337138.1| - 4.6e-19 68.9 0.4 1.3e-18 67.4 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|327310241|ref|YP_004337138.1| - 1.5e-15 57.2 0.0 2.7e-15 56.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|327310241|ref|YP_004337138.1| - 2e-06 27.9 4.6 0.0031 17.5 0.4 3.6 2 1 1 3 3 3 2 SIS domain DUF2529 PF10740.9 gi|327310241|ref|YP_004337138.1| - 0.00057 19.6 0.0 0.7 9.5 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF2529) bact-PGI_C PF10432.9 gi|327310241|ref|YP_004337138.1| - 0.051 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain GATase_4 PF13230.6 gi|327310241|ref|YP_004337138.1| - 0.091 11.6 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferases class-II tRNA_edit PF04073.15 gi|327310242|ref|YP_004337139.1| - 3.2e-28 98.3 0.9 3.7e-28 98.1 0.9 1.0 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain MmoB_DmpM PF02406.17 gi|327310242|ref|YP_004337139.1| - 0.041 14.1 0.0 0.078 13.2 0.0 1.6 1 1 0 1 1 1 0 MmoB/DmpM family XdhC_C PF13478.6 gi|327310242|ref|YP_004337139.1| - 0.072 13.6 0.0 0.098 13.2 0.0 1.2 1 0 0 1 1 1 0 XdhC Rossmann domain 2TM PF13239.6 gi|327310243|ref|YP_004337140.1| - 0.016 15.5 0.6 0.019 15.2 0.6 1.1 1 0 0 1 1 1 0 2TM domain FUSC PF04632.12 gi|327310243|ref|YP_004337140.1| - 0.019 13.5 0.6 0.022 13.3 0.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family S_4TM PF18159.1 gi|327310243|ref|YP_004337140.1| - 0.14 11.4 1.0 0.15 11.4 1.0 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain DUF2207 PF09972.9 gi|327310243|ref|YP_004337140.1| - 0.48 9.1 1.3 0.52 9.0 1.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) YobH PF13996.6 gi|327310243|ref|YP_004337140.1| - 3.6 7.7 5.2 1 9.5 0.7 1.9 1 1 1 2 2 2 0 YobH-like protein CBS PF00571.28 gi|327310244|ref|YP_004337141.1| - 4.6e-09 36.6 0.5 0.00037 20.9 0.2 2.4 2 1 1 3 3 3 2 CBS domain DUF3126 PF11324.8 gi|327310244|ref|YP_004337141.1| - 0.045 13.6 0.3 2.6 7.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3126) GARS_C PF02843.16 gi|327310244|ref|YP_004337141.1| - 0.2 11.9 2.3 0.23 11.8 1.2 1.8 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain Sulf_transp PF04143.14 gi|327310245|ref|YP_004337142.1| - 2e-25 90.0 22.5 2e-25 90.0 22.5 1.8 2 1 0 2 2 2 1 Sulphur transport PALP PF00291.25 gi|327310246|ref|YP_004337143.1| - 0.00067 19.1 0.3 0.00079 18.9 0.3 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF3798 PF12683.7 gi|327310246|ref|YP_004337143.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Rhomboid PF01694.22 gi|327310248|ref|YP_004337145.1| - 3.3e-05 23.9 2.8 3.6e-05 23.8 2.8 1.0 1 0 0 1 1 1 1 Rhomboid family DUF2017 PF09438.10 gi|327310249|ref|YP_004337146.1| - 0.0038 17.1 0.2 0.0043 16.9 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF2017) CcdA PF07362.12 gi|327310249|ref|YP_004337146.1| - 0.044 14.2 2.8 0.064 13.7 0.4 1.9 1 1 1 2 2 2 0 Post-segregation antitoxin CcdA PIN PF01850.21 gi|327310250|ref|YP_004337147.1| - 3.9e-10 40.3 0.3 4.8e-10 40.0 0.3 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|327310250|ref|YP_004337147.1| - 0.04 14.7 0.3 0.049 14.4 0.3 1.2 1 0 0 1 1 1 0 PIN domain UbiD PF01977.16 gi|327310251|ref|YP_004337148.1| - 2.1e-133 445.1 0.0 2.4e-133 445.0 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiA PF01040.18 gi|327310252|ref|YP_004337149.1| - 1.9e-37 128.9 21.5 2.5e-37 128.6 21.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family ASCH PF04266.14 gi|327310253|ref|YP_004337150.1| - 9.2e-12 45.5 0.0 1.7e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 ASCH domain Protoglobin PF11563.8 gi|327310253|ref|YP_004337150.1| - 0.0037 17.2 0.1 0.052 13.5 0.0 2.0 2 0 0 2 2 2 1 Protoglobin CobD_Cbib PF03186.13 gi|327310254|ref|YP_004337151.1| - 1.2e-54 185.5 2.3 1.6e-54 185.0 2.3 1.1 1 0 0 1 1 1 1 CobD/Cbib protein Radical_SAM PF04055.21 gi|327310255|ref|YP_004337152.1| - 1.9e-16 60.9 0.0 6.5e-16 59.2 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily PLDc_2 PF13091.6 gi|327310257|ref|YP_004337154.1| - 5.1e-27 94.4 0.0 1.5e-20 73.5 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|327310257|ref|YP_004337154.1| - 4.2e-06 26.7 3.5 0.006 16.7 0.1 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|327310257|ref|YP_004337154.1| - 0.0061 15.8 0.0 0.0093 15.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB Sulfatase PF00884.23 gi|327310257|ref|YP_004337154.1| - 0.13 11.6 0.1 1.3 8.4 0.0 2.1 2 0 0 2 2 2 0 Sulfatase GPR15L PF15854.5 gi|327310257|ref|YP_004337154.1| - 0.13 12.5 0.2 0.22 11.8 0.2 1.4 1 0 0 1 1 1 0 G-protein coupled receptor ligand 15 Glyco_hydro_77 PF02446.17 gi|327310258|ref|YP_004337155.1| - 3.6e-156 520.7 0.0 4.4e-156 520.4 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase Glycos_transf_2 PF00535.26 gi|327310259|ref|YP_004337156.1| - 1.8e-34 119.0 0.0 2.6e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|327310259|ref|YP_004337156.1| - 6.4e-23 81.2 5.5 1.1e-22 80.5 5.5 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|327310259|ref|YP_004337156.1| - 1.8e-17 64.0 0.4 3.3e-17 63.2 0.4 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|327310259|ref|YP_004337156.1| - 0.0026 17.3 0.0 0.0035 16.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Peripla_BP_6 PF13458.6 gi|327310259|ref|YP_004337156.1| - 0.0099 15.6 0.2 0.019 14.7 0.2 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Glyco_tranf_2_4 PF13704.6 gi|327310259|ref|YP_004337156.1| - 0.022 15.3 0.0 0.11 13.1 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase family 2 ATPase PF06745.13 gi|327310260|ref|YP_004337157.1| - 1.1e-23 83.7 0.0 6.1e-12 45.4 0.0 3.7 3 1 0 3 3 3 2 KaiC IstB_IS21 PF01695.17 gi|327310260|ref|YP_004337157.1| - 4.5e-14 52.6 0.1 7.5e-06 25.8 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|327310260|ref|YP_004337157.1| - 8.5e-10 39.0 0.0 6.6e-05 23.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|327310260|ref|YP_004337157.1| - 1.6e-09 38.4 0.4 0.0014 19.1 0.0 2.9 2 1 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.6 gi|327310260|ref|YP_004337157.1| - 2.4e-09 37.1 1.3 3.1e-05 23.6 0.2 2.7 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|327310260|ref|YP_004337157.1| - 2.2e-08 34.6 0.0 0.00063 20.2 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|327310260|ref|YP_004337157.1| - 1.3e-07 31.7 0.1 0.025 14.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|327310260|ref|YP_004337157.1| - 5.5e-07 29.5 0.0 0.037 13.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.22 gi|327310260|ref|YP_004337157.1| - 2.4e-06 27.3 0.0 0.063 12.9 0.0 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|327310260|ref|YP_004337157.1| - 6.3e-06 26.2 0.2 0.11 12.5 0.0 2.8 2 2 0 2 2 2 2 NACHT domain PhoH PF02562.16 gi|327310260|ref|YP_004337157.1| - 9.8e-06 25.2 1.2 0.03 13.8 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein CbiA PF01656.23 gi|327310260|ref|YP_004337157.1| - 3.9e-05 23.7 1.0 0.13 12.3 0.2 2.8 3 0 0 3 3 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain Rad51 PF08423.11 gi|327310260|ref|YP_004337157.1| - 5.3e-05 22.6 0.1 0.044 13.0 0.1 2.6 2 1 0 2 2 2 1 Rad51 DnaB_C PF03796.15 gi|327310260|ref|YP_004337157.1| - 6.1e-05 22.5 0.0 0.11 11.8 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|327310260|ref|YP_004337157.1| - 0.00014 21.7 0.0 0.017 14.9 0.0 2.7 2 1 0 2 2 2 1 AAA domain CobA_CobO_BtuR PF02572.15 gi|327310260|ref|YP_004337157.1| - 0.00015 22.1 0.0 1.1 9.5 0.0 3.1 2 1 0 2 2 2 2 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_29 PF13555.6 gi|327310260|ref|YP_004337157.1| - 0.00027 20.6 0.6 1.1 9.0 0.1 2.9 3 0 0 3 3 3 2 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|327310260|ref|YP_004337157.1| - 0.0004 20.9 0.0 0.1 13.1 0.0 2.6 3 0 0 3 3 2 1 ABC transporter AAA_28 PF13521.6 gi|327310260|ref|YP_004337157.1| - 0.0005 20.4 0.0 1.4 9.2 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|327310260|ref|YP_004337157.1| - 0.00064 20.3 0.0 2.6 8.6 0.0 2.8 3 1 0 3 3 2 2 AAA domain AAA_19 PF13245.6 gi|327310260|ref|YP_004337157.1| - 0.00068 20.0 0.1 0.84 10.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|327310260|ref|YP_004337157.1| - 0.00076 19.4 0.1 2.3 8.1 0.0 3.1 3 0 0 3 3 3 1 NTPase GvpD PF07088.11 gi|327310260|ref|YP_004337157.1| - 0.00093 17.9 0.0 0.28 9.8 0.0 2.4 2 1 0 2 2 2 1 GvpD gas vesicle protein ATPase_2 PF01637.18 gi|327310260|ref|YP_004337157.1| - 0.0011 18.9 0.0 0.6 10.0 0.0 2.6 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|327310260|ref|YP_004337157.1| - 0.0012 19.2 0.0 0.46 10.9 0.0 2.4 2 0 0 2 2 2 1 RNA helicase cobW PF02492.19 gi|327310260|ref|YP_004337157.1| - 0.0013 18.3 0.0 1 8.9 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_11 PF13086.6 gi|327310260|ref|YP_004337157.1| - 0.0015 18.4 0.0 0.29 10.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.6 gi|327310260|ref|YP_004337157.1| - 0.0016 18.4 0.6 1.5 8.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|327310260|ref|YP_004337157.1| - 0.0036 17.1 0.1 5.6 6.7 0.0 3.1 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|327310260|ref|YP_004337157.1| - 0.0042 17.3 0.1 3 8.0 0.1 2.5 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|327310260|ref|YP_004337157.1| - 0.0045 16.9 0.0 2.9 7.8 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|327310260|ref|YP_004337157.1| - 0.0046 16.7 0.1 1.9 8.2 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 gi|327310260|ref|YP_004337157.1| - 0.0051 16.3 0.0 3.5 7.1 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Roc PF08477.13 gi|327310260|ref|YP_004337157.1| - 0.0052 17.0 0.0 0.5 10.6 0.0 2.3 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|327310260|ref|YP_004337157.1| - 0.0066 16.5 0.0 8.3 6.5 0.0 3.2 2 1 1 3 3 3 0 AAA domain TsaE PF02367.17 gi|327310260|ref|YP_004337157.1| - 0.0082 16.1 0.9 0.87 9.6 0.1 2.7 3 0 0 3 3 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF2075 PF09848.9 gi|327310260|ref|YP_004337157.1| - 0.012 14.8 0.0 0.39 9.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|327310260|ref|YP_004337157.1| - 0.016 15.2 0.1 4.3 7.3 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_35 PF14516.6 gi|327310260|ref|YP_004337157.1| - 0.017 13.9 0.0 3.9 6.2 0.0 2.4 2 0 0 2 2 2 0 AAA-like domain TIP49 PF06068.13 gi|327310260|ref|YP_004337157.1| - 0.019 14.2 0.2 3.6 6.7 0.1 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_17 PF13207.6 gi|327310260|ref|YP_004337157.1| - 0.019 15.4 0.0 4.9 7.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|327310260|ref|YP_004337157.1| - 0.022 14.2 0.6 2.3 7.5 0.1 2.5 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|327310260|ref|YP_004337157.1| - 0.03 14.0 0.0 8.8 6.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP_bind_1 PF03029.17 gi|327310260|ref|YP_004337157.1| - 0.034 13.9 0.1 3.6 7.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|327310260|ref|YP_004337157.1| - 0.034 13.9 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop TrwB_AAD_bind PF10412.9 gi|327310260|ref|YP_004337157.1| - 0.055 12.4 0.3 6.7 5.5 0.1 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain KdpD PF02702.17 gi|327310260|ref|YP_004337157.1| - 0.065 12.7 0.0 0.45 10.0 0.0 2.1 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain Thymidylate_kin PF02223.17 gi|327310260|ref|YP_004337157.1| - 0.079 12.6 0.0 1.6 8.3 0.0 2.8 3 0 0 3 3 3 0 Thymidylate kinase adh_short_C2 PF13561.6 gi|327310260|ref|YP_004337157.1| - 0.087 12.4 0.2 0.89 9.1 0.2 2.2 1 1 1 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Zeta_toxin PF06414.12 gi|327310260|ref|YP_004337157.1| - 0.088 12.1 0.0 9.8 5.4 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin AAA_23 PF13476.6 gi|327310260|ref|YP_004337157.1| - 0.097 13.2 0.4 2.7 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|327310260|ref|YP_004337157.1| - 0.12 12.0 0.0 3.9 7.1 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain RecA PF00154.21 gi|327310260|ref|YP_004337157.1| - 0.19 11.1 0.0 3.9 6.8 0.0 2.2 2 0 0 2 2 2 0 recA bacterial DNA recombination protein NB-ARC PF00931.22 gi|327310260|ref|YP_004337157.1| - 0.22 10.6 0.0 6.5 5.9 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain AAA_10 PF12846.7 gi|327310260|ref|YP_004337157.1| - 0.23 10.4 0.0 17 4.2 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.23 gi|327310260|ref|YP_004337157.1| - 0.24 11.5 0.1 0.8 9.8 0.0 1.9 2 0 0 2 2 1 0 50S ribosome-binding GTPase NitrOD5 PF11537.8 gi|327310261|ref|YP_004337158.1| - 0.066 13.4 0.1 0.078 13.1 0.1 1.2 1 0 0 1 1 1 0 Nitrosopumilus output domain 5 Peptidase_M19 PF01244.21 gi|327310262|ref|YP_004337159.1| - 7e-76 255.4 0.0 7.8e-76 255.3 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|327310262|ref|YP_004337159.1| - 0.023 14.5 0.1 0.19 11.5 0.1 2.7 1 1 0 1 1 1 0 Amidohydrolase TYW3 PF02676.14 gi|327310263|ref|YP_004337160.1| - 1.1e-24 87.0 0.0 4.2e-24 85.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase TYW3 Ubie_methyltran PF01209.18 gi|327310264|ref|YP_004337161.1| - 3.1e-20 72.5 0.0 4.1e-20 72.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|327310264|ref|YP_004337161.1| - 6.2e-18 65.2 0.1 1.2e-17 64.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310264|ref|YP_004337161.1| - 1.8e-15 57.4 0.1 3.5e-15 56.5 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|327310264|ref|YP_004337161.1| - 2.7e-10 40.2 0.0 5.3e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327310264|ref|YP_004337161.1| - 1.2e-09 38.3 0.0 1.6e-09 37.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327310264|ref|YP_004337161.1| - 9e-09 36.0 0.0 1.9e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|327310264|ref|YP_004337161.1| - 2.1e-06 27.5 0.0 3.1e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|327310264|ref|YP_004337161.1| - 0.00025 20.4 0.0 0.00038 19.9 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|327310264|ref|YP_004337161.1| - 0.00078 18.5 0.0 0.0011 18.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|327310264|ref|YP_004337161.1| - 0.0029 17.6 0.0 0.0059 16.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|327310264|ref|YP_004337161.1| - 0.0074 15.8 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|327310264|ref|YP_004337161.1| - 0.077 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F RrnaAD PF00398.20 gi|327310264|ref|YP_004337161.1| - 0.2 10.7 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase SNAPc_SNAP43 PF09808.9 gi|327310264|ref|YP_004337161.1| - 0.2 11.6 0.0 0.44 10.5 0.0 1.4 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 Methyltransf_23 PF13489.6 gi|327310265|ref|YP_004337162.1| - 1.2e-05 25.2 0.0 3e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327310265|ref|YP_004337162.1| - 7.2e-05 23.4 0.0 0.00016 22.3 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|327310265|ref|YP_004337162.1| - 0.0013 18.5 0.0 0.0063 16.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327310265|ref|YP_004337162.1| - 0.045 14.5 0.0 0.11 13.2 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Desulfoferrod_N PF06397.12 gi|327310266|ref|YP_004337163.1| - 0.013 15.1 0.1 0.025 14.2 0.1 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DNA_ligase_ZBD PF03119.16 gi|327310266|ref|YP_004337163.1| - 0.042 13.9 0.3 0.042 13.9 0.3 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Asparaginase_C PF17763.1 gi|327310266|ref|YP_004337163.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain UPF0126 PF03458.13 gi|327310269|ref|YP_004337166.1| - 2.5e-43 145.9 20.8 1.5e-21 76.0 2.5 2.3 2 0 0 2 2 2 2 UPF0126 domain 2_5_RNA_ligase2 PF13563.6 gi|327310271|ref|YP_004337168.1| - 4.1e-10 39.8 0.1 3.6e-09 36.7 0.1 1.9 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|327310271|ref|YP_004337168.1| - 0.00045 20.4 1.3 0.27 11.4 0.2 2.5 1 1 1 2 2 2 2 LigT like Phosphoesterase T6SS_VipA PF05591.12 gi|327310271|ref|YP_004337168.1| - 0.025 14.4 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 ABC_tran PF00005.27 gi|327310272|ref|YP_004337169.1| - 1.3e-39 135.8 0.0 2.2e-19 70.3 0.0 2.4 2 0 0 2 2 2 2 ABC transporter RLI PF04068.15 gi|327310272|ref|YP_004337169.1| - 1.2e-13 50.6 4.7 2.8e-13 49.4 4.7 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|327310272|ref|YP_004337169.1| - 1e-12 48.5 4.3 0.00054 19.9 0.1 4.1 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327310272|ref|YP_004337169.1| - 3.4e-11 43.0 2.3 0.002 17.6 0.1 3.4 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.7 gi|327310272|ref|YP_004337169.1| - 3e-08 33.4 12.9 9.7e-05 22.3 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|327310272|ref|YP_004337169.1| - 4.3e-07 29.5 2.8 4.3e-07 29.5 2.8 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain AAA PF00004.29 gi|327310272|ref|YP_004337169.1| - 1.1e-05 25.9 0.1 0.063 13.7 0.0 3.2 4 0 0 4 4 2 2 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 gi|327310272|ref|YP_004337169.1| - 4.5e-05 23.5 9.7 7.3e-05 22.8 9.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310272|ref|YP_004337169.1| - 0.00022 21.3 12.1 0.0038 17.3 2.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|327310272|ref|YP_004337169.1| - 0.0004 20.0 0.8 0.063 12.9 0.4 3.3 2 1 0 2 2 2 1 AAA domain Fer4_2 PF12797.7 gi|327310272|ref|YP_004337169.1| - 0.00047 20.1 9.4 0.0011 18.9 0.6 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain MMR_HSR1 PF01926.23 gi|327310272|ref|YP_004337169.1| - 0.0005 20.1 0.1 0.044 13.9 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase Fer4_7 PF12838.7 gi|327310272|ref|YP_004337169.1| - 0.00053 20.5 8.4 0.00095 19.7 0.7 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain AAA_33 PF13671.6 gi|327310272|ref|YP_004337169.1| - 0.00054 20.1 0.2 0.02 15.0 0.1 2.9 2 1 0 2 2 2 1 AAA domain Fer4_9 PF13187.6 gi|327310272|ref|YP_004337169.1| - 0.00054 20.1 7.7 0.001 19.2 7.3 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|327310272|ref|YP_004337169.1| - 0.00054 20.4 0.1 0.047 14.1 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|327310272|ref|YP_004337169.1| - 0.0012 18.6 0.1 0.11 12.1 0.1 3.0 3 0 0 3 3 3 1 AAA domain RsgA_GTPase PF03193.16 gi|327310272|ref|YP_004337169.1| - 0.0017 18.3 0.3 0.024 14.5 0.1 2.5 2 0 0 2 2 2 1 RsgA GTPase SbcCD_C PF13558.6 gi|327310272|ref|YP_004337169.1| - 0.0026 18.0 0.1 4.7 7.5 0.1 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit RuvB_N PF05496.12 gi|327310272|ref|YP_004337169.1| - 0.0055 16.5 0.1 2.1 8.0 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_15 PF13175.6 gi|327310272|ref|YP_004337169.1| - 0.014 15.1 0.1 5 6.7 0.0 3.0 3 0 0 3 3 3 0 AAA ATPase domain AAA_14 PF13173.6 gi|327310272|ref|YP_004337169.1| - 0.014 15.4 0.1 1.3 9.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|327310272|ref|YP_004337169.1| - 0.015 15.9 0.1 1.8 9.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|327310272|ref|YP_004337169.1| - 0.02 15.1 1.8 0.5 10.7 0.1 3.0 2 2 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|327310272|ref|YP_004337169.1| - 0.022 14.0 0.2 2.1 7.5 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Fer4_16 PF13484.6 gi|327310272|ref|YP_004337169.1| - 0.031 15.2 9.0 0.039 14.9 1.5 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain TsaE PF02367.17 gi|327310272|ref|YP_004337169.1| - 0.032 14.2 0.8 0.4 10.7 0.0 2.6 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATP_bind_1 PF03029.17 gi|327310272|ref|YP_004337169.1| - 0.033 14.0 0.8 0.57 9.9 0.2 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 gi|327310272|ref|YP_004337169.1| - 0.04 14.3 0.0 0.85 10.0 0.0 2.4 2 0 0 2 2 2 0 RNA helicase MobB PF03205.14 gi|327310272|ref|YP_004337169.1| - 0.052 13.5 0.3 2.4 8.1 0.1 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|327310272|ref|YP_004337169.1| - 0.053 13.4 0.2 0.23 11.3 0.1 2.1 2 0 0 2 2 2 0 NACHT domain RecA PF00154.21 gi|327310272|ref|YP_004337169.1| - 0.069 12.6 0.1 2.2 7.7 0.0 2.2 2 0 0 2 2 2 0 recA bacterial DNA recombination protein CLP1_P PF16575.5 gi|327310272|ref|YP_004337169.1| - 0.078 12.8 0.1 7.3 6.3 0.0 2.8 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_23 PF13476.6 gi|327310272|ref|YP_004337169.1| - 0.089 13.3 0.5 2.4 8.6 0.1 2.3 2 0 0 2 2 2 0 AAA domain DUF3219 PF11514.8 gi|327310272|ref|YP_004337169.1| - 0.11 12.5 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3219) ATP-synt_ab PF00006.25 gi|327310272|ref|YP_004337169.1| - 0.18 11.4 0.0 18 4.9 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Fer4_11 PF13247.6 gi|327310272|ref|YP_004337169.1| - 0.29 11.3 4.9 0.56 10.4 4.9 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain MeaB PF03308.16 gi|327310272|ref|YP_004337169.1| - 0.4 9.6 2.4 0.3 10.0 0.5 1.7 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|327310272|ref|YP_004337169.1| - 0.88 9.4 4.7 2.4 8.0 0.1 2.8 3 0 0 3 3 3 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|327310272|ref|YP_004337169.1| - 0.94 9.7 5.9 6.8 6.9 0.1 3.8 4 1 0 4 4 3 0 AAA domain Fer4_17 PF13534.6 gi|327310272|ref|YP_004337169.1| - 1.3 9.6 8.8 22 5.7 8.9 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327310272|ref|YP_004337169.1| - 2.4 8.9 12.3 0.23 12.1 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|327310272|ref|YP_004337169.1| - 2.4 8.7 7.9 0.26 11.8 1.5 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.15 gi|327310272|ref|YP_004337169.1| - 3.4 7.6 6.4 1.9 8.4 0.4 3.2 4 0 0 4 4 3 0 NTPase Fer4_3 PF12798.7 gi|327310272|ref|YP_004337169.1| - 5.8 8.1 15.7 2.8 9.1 4.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain zf-NADH-PPase PF09297.11 gi|327310273|ref|YP_004337170.1| - 3.8e-06 26.4 0.1 9e-06 25.2 0.1 1.6 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|327310273|ref|YP_004337170.1| - 0.00016 21.5 0.0 0.00032 20.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.6 gi|327310273|ref|YP_004337170.1| - 0.002 17.4 0.5 0.002 17.4 0.5 1.7 2 0 0 2 2 2 1 Transcription factor zinc-finger DZR PF12773.7 gi|327310273|ref|YP_004337170.1| - 0.0026 17.7 0.0 0.0038 17.2 0.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|327310273|ref|YP_004337170.1| - 0.016 14.9 0.5 0.094 12.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF2458 PF10454.9 gi|327310273|ref|YP_004337170.1| - 0.019 14.7 0.3 0.024 14.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) FYDLN_acid PF09538.10 gi|327310273|ref|YP_004337170.1| - 0.02 15.6 0.9 0.025 15.3 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DUF2387 PF09526.10 gi|327310273|ref|YP_004337170.1| - 0.035 14.2 0.3 0.048 13.8 0.3 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-IS66 PF13005.7 gi|327310273|ref|YP_004337170.1| - 0.075 13.4 0.7 0.52 10.8 0.7 2.2 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Spindle_Spc25 PF08234.12 gi|327310273|ref|YP_004337170.1| - 0.08 13.2 0.2 0.11 12.7 0.2 1.2 1 0 0 1 1 1 0 Chromosome segregation protein Spc25 zf-ribbon_3 PF13248.6 gi|327310273|ref|YP_004337170.1| - 0.1 12.0 0.3 0.51 9.8 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TTc_toxin_rep PF18807.1 gi|327310273|ref|YP_004337170.1| - 0.17 11.7 0.1 0.26 11.1 0.1 1.3 1 0 0 1 1 1 0 Tripartite Tc toxins repeat TPP_enzyme_C PF02775.21 gi|327310274|ref|YP_004337171.1| - 6.4e-21 74.7 0.1 1.8e-20 73.3 0.1 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|327310274|ref|YP_004337171.1| - 1.3e-14 54.5 0.1 2.6e-14 53.6 0.1 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|327310274|ref|YP_004337171.1| - 4.7e-10 38.9 10.2 6.3e-08 32.1 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|327310274|ref|YP_004337171.1| - 7.9e-08 31.9 10.5 0.0002 21.2 1.6 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|327310274|ref|YP_004337171.1| - 9.7e-07 28.5 4.3 0.0019 17.8 0.2 2.6 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_6 PF12837.7 gi|327310274|ref|YP_004337171.1| - 1.8e-05 24.6 2.1 1.8e-05 24.6 2.1 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327310274|ref|YP_004337171.1| - 0.00019 22.0 9.4 0.015 15.9 3.1 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|327310274|ref|YP_004337171.1| - 0.00035 20.6 9.5 0.00083 19.4 9.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310274|ref|YP_004337171.1| - 0.0006 19.9 6.9 0.0014 18.7 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310274|ref|YP_004337171.1| - 0.0015 19.1 3.7 0.016 15.7 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327310274|ref|YP_004337171.1| - 0.0045 17.9 6.6 0.007 17.3 1.5 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_11 PF13247.6 gi|327310274|ref|YP_004337171.1| - 0.0046 17.1 4.4 0.0086 16.2 4.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327310274|ref|YP_004337171.1| - 0.012 15.8 9.8 0.077 13.2 10.4 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain E1_dh PF00676.20 gi|327310274|ref|YP_004337171.1| - 0.18 10.7 0.1 0.32 9.9 0.1 1.3 1 0 0 1 1 1 0 Dehydrogenase E1 component PQQ_3 PF13570.6 gi|327310274|ref|YP_004337171.1| - 2 9.0 7.0 2.8 8.5 0.3 3.8 3 0 0 3 3 3 0 PQQ-like domain Fer4_15 PF13459.6 gi|327310274|ref|YP_004337171.1| - 3.7 8.3 9.1 1.9 9.3 1.6 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|327310274|ref|YP_004337171.1| - 4.9 7.8 8.8 8.3 7.0 2.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|327310275|ref|YP_004337172.1| - 1.3e-26 93.8 0.0 1.8e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase NT-C2 PF10358.9 gi|327310275|ref|YP_004337172.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 N-terminal C2 in EEIG1 and EHBP1 proteins RIO1 PF01163.22 gi|327310276|ref|YP_004337173.1| - 8e-52 175.6 0.0 1.3e-51 174.9 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|327310276|ref|YP_004337173.1| - 1.2e-05 24.8 0.0 2e-05 24.1 0.0 1.3 1 1 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|327310276|ref|YP_004337173.1| - 0.001 19.0 1.0 0.0071 16.3 0.2 2.1 1 1 0 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.14 gi|327310276|ref|YP_004337173.1| - 0.028 13.8 0.2 0.93 8.8 0.0 2.6 2 1 1 3 3 3 0 Lipopolysaccharide kinase (Kdo/WaaP) family KH_1 PF00013.29 gi|327310277|ref|YP_004337174.1| - 0.0016 18.2 0.8 0.0036 17.1 0.8 1.5 1 0 0 1 1 1 1 KH domain Ribosomal_S3Ae PF01015.18 gi|327310278|ref|YP_004337175.1| - 6.3e-54 182.6 0.0 7.5e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family DUF3885 PF13021.6 gi|327310280|ref|YP_004337177.1| - 0.072 13.2 0.1 0.24 11.5 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF3885) Pox_VLTF3 PF04947.14 gi|327310280|ref|YP_004337177.1| - 0.13 12.0 3.8 0.087 12.6 0.9 2.0 2 0 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like Ribosomal_S13_N PF08069.12 gi|327310281|ref|YP_004337178.1| - 7.5e-25 86.8 0.0 1.5e-24 85.8 0.0 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|327310281|ref|YP_004337178.1| - 1.1e-15 57.6 0.5 1.7e-15 56.9 0.5 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 FGAR-AT_linker PF18072.1 gi|327310281|ref|YP_004337178.1| - 0.056 14.0 0.0 0.13 12.8 0.0 1.6 1 1 0 1 1 1 0 Formylglycinamide ribonucleotide amidotransferase linker domain CMAS PF02353.20 gi|327310282|ref|YP_004337179.1| - 1.8e-07 30.8 0.0 2.2e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 gi|327310282|ref|YP_004337179.1| - 2e-06 27.5 0.0 1.2e-05 24.9 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_31 PF13847.6 gi|327310282|ref|YP_004337179.1| - 1.6e-05 24.7 0.0 2.1e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310282|ref|YP_004337179.1| - 0.00011 22.9 0.0 0.00019 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain HTH_47 PF16221.5 gi|327310282|ref|YP_004337179.1| - 0.00024 20.6 0.0 0.00043 19.8 0.0 1.4 1 0 0 1 1 1 1 winged helix-turn-helix HTH_20 PF12840.7 gi|327310282|ref|YP_004337179.1| - 0.0013 18.7 0.0 0.0024 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain PCMT PF01135.19 gi|327310282|ref|YP_004337179.1| - 0.0047 16.7 0.0 0.007 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_24 PF13412.6 gi|327310282|ref|YP_004337179.1| - 0.0062 16.1 0.3 0.014 14.9 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Methyltransf_4 PF02390.17 gi|327310282|ref|YP_004337179.1| - 0.0075 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_11 PF08241.12 gi|327310282|ref|YP_004337179.1| - 0.013 16.1 0.0 0.021 15.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|327310282|ref|YP_004337179.1| - 0.014 15.3 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|327310282|ref|YP_004337179.1| - 0.015 14.4 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MarR_2 PF12802.7 gi|327310282|ref|YP_004337179.1| - 0.016 15.1 0.0 0.035 14.0 0.0 1.6 1 0 0 1 1 1 0 MarR family MetW PF07021.12 gi|327310282|ref|YP_004337179.1| - 0.02 14.5 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW HTH_5 PF01022.20 gi|327310282|ref|YP_004337179.1| - 0.02 14.7 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|327310282|ref|YP_004337179.1| - 0.021 15.1 0.1 0.061 13.7 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|327310282|ref|YP_004337179.1| - 0.026 14.5 0.0 0.073 13.1 0.0 1.9 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|327310282|ref|YP_004337179.1| - 0.027 14.3 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|327310282|ref|YP_004337179.1| - 0.029 14.0 0.0 0.32 10.7 0.0 2.5 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|327310282|ref|YP_004337179.1| - 0.041 13.7 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 TFIIE alpha subunit Methyltransf_32 PF13679.6 gi|327310282|ref|YP_004337179.1| - 0.058 13.4 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain SgrR_N PF12793.7 gi|327310282|ref|YP_004337179.1| - 0.062 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term Methyltransf_2 PF00891.18 gi|327310282|ref|YP_004337179.1| - 0.067 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain HTH_CodY PF08222.11 gi|327310282|ref|YP_004337179.1| - 0.072 12.7 0.1 0.34 10.5 0.1 1.9 2 0 0 2 2 2 0 CodY helix-turn-helix domain DUF4423 PF14394.6 gi|327310282|ref|YP_004337179.1| - 0.084 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|327310282|ref|YP_004337179.1| - 0.086 13.4 0.0 0.19 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Methyltransf_12 PF08242.12 gi|327310282|ref|YP_004337179.1| - 0.099 13.4 0.0 0.16 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain HTH_28 PF13518.6 gi|327310282|ref|YP_004337179.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DS PF01916.17 gi|327310283|ref|YP_004337180.1| - 1.9e-87 293.2 0.0 2.2e-87 293.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Arm-DNA-bind_2 PF12167.8 gi|327310283|ref|YP_004337180.1| - 0.11 12.4 0.1 27 4.8 0.0 3.1 3 0 0 3 3 3 0 Arm DNA-binding domain Glycos_transf_4 PF00953.21 gi|327310284|ref|YP_004337181.1| - 2.4e-24 86.1 11.9 2.4e-24 86.1 11.9 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 4 Ras PF00071.22 gi|327310285|ref|YP_004337182.1| - 1.4e-06 28.0 0.1 1.6e-05 24.6 0.1 2.0 1 1 0 1 1 1 1 Ras family MMR_HSR1 PF01926.23 gi|327310285|ref|YP_004337182.1| - 4.1e-05 23.6 0.0 5.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|327310285|ref|YP_004337182.1| - 5.9e-05 22.8 0.0 0.00015 21.5 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|327310285|ref|YP_004337182.1| - 0.0003 20.3 0.0 0.00035 20.1 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family FeoB_N PF02421.18 gi|327310285|ref|YP_004337182.1| - 0.0013 18.3 0.0 0.0041 16.7 0.0 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Viral_helicase1 PF01443.18 gi|327310285|ref|YP_004337182.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Hydrolase_3 PF08282.12 gi|327310287|ref|YP_004337184.1| - 2e-26 93.3 0.0 5.6e-14 52.5 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|327310287|ref|YP_004337184.1| - 2.9e-11 43.4 0.0 2.2e-10 40.5 0.0 1.9 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|327310287|ref|YP_004337184.1| - 5.9e-08 33.2 0.3 0.035 14.4 0.0 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|327310287|ref|YP_004337184.1| - 3.3e-06 27.6 3.4 0.026 14.9 0.1 3.2 1 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|327310287|ref|YP_004337184.1| - 0.028 14.5 0.0 0.051 13.7 0.0 1.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|327310287|ref|YP_004337184.1| - 0.19 10.8 0.0 6.2 5.9 0.0 2.1 2 0 0 2 2 2 0 Trehalose-phosphatase CBS PF00571.28 gi|327310289|ref|YP_004337186.1| - 4.7e-26 91.0 2.3 4e-13 49.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain VWA_2 PF13519.6 gi|327310290|ref|YP_004337187.1| - 0.0012 19.5 0.1 0.0044 17.7 0.1 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|327310290|ref|YP_004337187.1| - 0.01 15.2 0.9 0.042 13.2 0.9 1.8 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein VWA PF00092.28 gi|327310290|ref|YP_004337187.1| - 0.016 15.5 2.0 0.02 15.1 0.2 2.1 2 1 0 2 2 2 0 von Willebrand factor type A domain AAA_5 PF07728.14 gi|327310291|ref|YP_004337188.1| - 1.9e-25 89.4 0.0 4.3e-25 88.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|327310291|ref|YP_004337188.1| - 3e-05 24.4 0.0 7.8e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|327310291|ref|YP_004337188.1| - 0.00025 20.9 0.0 0.00048 20.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|327310291|ref|YP_004337188.1| - 0.00046 19.6 0.0 0.0017 17.7 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|327310291|ref|YP_004337188.1| - 0.0078 16.6 0.0 0.017 15.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|327310291|ref|YP_004337188.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein HCV_NS4a PF01006.20 gi|327310291|ref|YP_004337188.1| - 0.068 12.9 0.0 0.18 11.6 0.0 1.7 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a AAA_7 PF12775.7 gi|327310291|ref|YP_004337188.1| - 0.088 12.3 0.0 0.18 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|327310291|ref|YP_004337188.1| - 0.12 12.0 0.0 0.41 10.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|327310291|ref|YP_004337188.1| - 0.22 11.3 0.0 0.34 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain E1-E2_ATPase PF00122.20 gi|327310292|ref|YP_004337189.1| - 0.15 11.6 1.4 0.16 11.5 1.3 1.2 1 1 0 1 1 1 0 E1-E2 ATPase HTH_5 PF01022.20 gi|327310293|ref|YP_004337190.1| - 7.7e-07 28.9 0.1 1.2e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|327310293|ref|YP_004337190.1| - 4.1e-06 26.7 0.3 9.8e-06 25.5 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|327310293|ref|YP_004337190.1| - 0.00072 19.4 0.0 0.00089 19.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|327310293|ref|YP_004337190.1| - 0.0017 18.3 0.1 0.0023 17.8 0.1 1.2 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PaaX PF07848.12 gi|327310293|ref|YP_004337190.1| - 0.012 15.8 0.0 0.015 15.5 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein HTH_45 PF14947.6 gi|327310293|ref|YP_004337190.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|327310293|ref|YP_004337190.1| - 0.013 15.0 0.0 0.017 14.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|327310293|ref|YP_004337190.1| - 0.028 14.6 0.0 0.04 14.1 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|327310293|ref|YP_004337190.1| - 0.032 14.1 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF2250 PF10007.9 gi|327310293|ref|YP_004337190.1| - 0.044 13.9 0.1 0.06 13.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|327310293|ref|YP_004337190.1| - 0.05 13.5 0.0 0.065 13.2 0.0 1.1 1 0 0 1 1 1 0 MarR family DUF4423 PF14394.6 gi|327310293|ref|YP_004337190.1| - 0.061 13.0 0.0 0.067 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Replic_Relax PF13814.6 gi|327310293|ref|YP_004337190.1| - 0.076 13.1 0.0 0.078 13.0 0.0 1.0 1 0 0 1 1 1 0 Replication-relaxation LexA_DNA_bind PF01726.16 gi|327310293|ref|YP_004337190.1| - 0.089 12.6 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 LexA DNA binding domain HTH_DeoR PF08220.12 gi|327310293|ref|YP_004337190.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|327310293|ref|YP_004337190.1| - 0.13 12.6 0.0 0.16 12.4 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator NUMOD1 PF07453.13 gi|327310293|ref|YP_004337190.1| - 0.16 12.3 0.1 11 6.4 0.0 2.1 2 0 0 2 2 2 0 NUMOD1 domain zf-CDGSH PF09360.10 gi|327310296|ref|YP_004337193.1| - 8.6e-12 45.1 0.1 1e-11 44.9 0.1 1.1 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type PAAR_motif PF05488.13 gi|327310296|ref|YP_004337193.1| - 0.06 13.5 0.0 0.08 13.1 0.0 1.3 1 0 0 1 1 1 0 PAAR motif PBP_like PF12727.7 gi|327310297|ref|YP_004337194.1| - 7.6e-45 152.4 0.3 3.7e-44 150.2 0.1 2.0 2 0 0 2 2 2 1 PBP superfamily domain HTH_1 PF00126.27 gi|327310297|ref|YP_004337194.1| - 4.6e-15 55.3 4.1 1e-13 51.0 0.1 4.2 5 0 0 5 5 5 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.6 gi|327310297|ref|YP_004337194.1| - 0.0011 19.1 7.4 0.5 10.5 1.6 3.9 4 0 0 4 4 4 2 Helix-turn-helix domain HTH_8 PF02954.19 gi|327310297|ref|YP_004337194.1| - 0.0017 18.1 0.0 0.0062 16.3 0.0 2.0 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family LysR_substrate PF03466.20 gi|327310297|ref|YP_004337194.1| - 0.0071 15.7 0.4 0.26 10.6 0.2 2.6 2 1 0 2 2 2 1 LysR substrate binding domain HTH_50 PF18024.1 gi|327310297|ref|YP_004337194.1| - 0.04 13.5 0.2 8.1 6.1 0.1 3.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|327310297|ref|YP_004337194.1| - 0.048 13.5 5.8 2.6 8.0 0.2 4.4 3 1 1 4 4 4 0 Homeodomain-like domain HTH_30 PF13556.6 gi|327310297|ref|YP_004337194.1| - 0.073 12.9 0.0 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|327310297|ref|YP_004337194.1| - 0.12 11.8 0.0 0.73 9.3 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 Phosphonate-bd PF12974.7 gi|327310297|ref|YP_004337194.1| - 0.13 11.8 0.0 0.36 10.4 0.0 1.8 3 0 0 3 3 3 0 ABC transporter, phosphonate, periplasmic substrate-binding protein FtsK_gamma PF09397.10 gi|327310297|ref|YP_004337194.1| - 0.15 11.9 0.1 0.75 9.6 0.1 2.2 2 0 0 2 2 2 0 Ftsk gamma domain HTH_24 PF13412.6 gi|327310297|ref|YP_004337194.1| - 0.98 9.0 4.9 41 3.8 0.0 4.4 5 0 0 5 5 5 0 Winged helix-turn-helix DNA-binding DUF4645 PF15488.6 gi|327310298|ref|YP_004337195.1| - 0.08 12.4 0.0 0.085 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4645) DUF3188 PF11384.8 gi|327310298|ref|YP_004337195.1| - 2.5 7.9 8.7 1.4 8.7 1.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) DUF1218 PF06749.12 gi|327310298|ref|YP_004337195.1| - 3.6 8.2 8.2 7.7 7.1 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1218) MarR_2 PF12802.7 gi|327310299|ref|YP_004337196.1| - 3.5e-06 26.8 0.2 6.5e-06 25.9 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|327310299|ref|YP_004337196.1| - 2.8e-05 23.6 0.1 5.1e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|327310299|ref|YP_004337196.1| - 3.7e-05 23.6 0.1 6.7e-05 22.8 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|327310299|ref|YP_004337196.1| - 4.5e-05 23.2 0.1 8.6e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AsnC_trans_reg PF01037.21 gi|327310299|ref|YP_004337196.1| - 8.4e-05 22.5 0.1 0.00053 19.9 0.0 2.3 2 1 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|327310299|ref|YP_004337196.1| - 0.00012 22.1 0.3 0.00024 21.1 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|327310299|ref|YP_004337196.1| - 0.0067 16.3 0.1 0.017 15.1 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_8 PF02954.19 gi|327310299|ref|YP_004337196.1| - 0.032 14.0 0.3 0.087 12.6 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Sigma70_r4_2 PF08281.12 gi|327310299|ref|YP_004337196.1| - 0.041 13.6 0.0 0.097 12.4 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|327310299|ref|YP_004337196.1| - 0.058 13.2 0.2 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.6 gi|327310299|ref|YP_004337196.1| - 0.11 13.1 0.3 0.24 11.9 0.1 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|327310299|ref|YP_004337196.1| - 0.11 12.8 0.1 0.79 10.1 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_23 PF13384.6 gi|327310299|ref|YP_004337196.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|327310299|ref|YP_004337196.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain 2-Hacid_dh PF00389.30 gi|327310299|ref|YP_004337196.1| - 0.16 11.6 0.2 0.67 9.6 0.2 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PFK PF00365.20 gi|327310300|ref|YP_004337197.1| - 9.7e-91 304.0 0.1 1.1e-90 303.8 0.1 1.0 1 0 0 1 1 1 1 Phosphofructokinase DAGK_cat PF00781.24 gi|327310300|ref|YP_004337197.1| - 0.016 14.8 0.1 0.04 13.5 0.1 1.6 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Bmp PF02608.14 gi|327310300|ref|YP_004337197.1| - 0.027 13.5 0.0 0.037 13.0 0.0 1.1 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like DeoC PF01791.9 gi|327310301|ref|YP_004337198.1| - 6.8e-40 137.1 0.0 8e-40 136.9 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|327310301|ref|YP_004337198.1| - 0.042 13.3 0.0 0.3 10.5 0.0 2.1 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel Phosphodiest PF01663.22 gi|327310302|ref|YP_004337199.1| - 0.0022 17.6 2.2 0.015 14.9 2.2 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4434 PF14488.6 gi|327310304|ref|YP_004337201.1| - 0.0013 18.8 0.0 0.042 13.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4434) HhH-GPD PF00730.25 gi|327310305|ref|YP_004337202.1| - 1.9e-20 73.3 0.0 2.3e-20 73.0 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|327310305|ref|YP_004337202.1| - 2.2e-06 27.8 6.8 4e-06 27.0 6.8 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|327310305|ref|YP_004337202.1| - 2e-05 25.1 0.1 0.00059 20.4 0.0 2.4 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|327310305|ref|YP_004337202.1| - 7.5e-05 22.4 0.0 0.0002 21.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|327310305|ref|YP_004337202.1| - 0.002 18.3 0.3 0.13 12.6 0.0 2.8 2 0 0 2 2 2 1 IMS family HHH motif Transposase_20 PF02371.16 gi|327310305|ref|YP_004337202.1| - 0.016 15.5 0.0 0.043 14.1 0.0 1.7 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family HHH_8 PF14716.6 gi|327310305|ref|YP_004337202.1| - 0.087 13.2 0.1 0.42 11.0 0.0 2.1 1 1 1 2 2 2 0 Helix-hairpin-helix domain HTH_17 PF12728.7 gi|327310306|ref|YP_004337203.1| - 0.044 14.0 0.8 0.29 11.3 0.1 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|327310306|ref|YP_004337203.1| - 0.069 13.1 0.4 0.67 10.0 0.0 2.4 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain PrgH PF09480.10 gi|327310306|ref|YP_004337203.1| - 0.25 10.6 0.0 0.35 10.1 0.0 1.1 1 0 0 1 1 1 0 Type III secretion system protein PrgH-EprH (PrgH) HTH_AsnC-type PF13404.6 gi|327310306|ref|YP_004337203.1| - 1.5 8.7 5.8 16 5.4 0.0 2.9 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Herpes_Helicase PF02689.14 gi|327310307|ref|YP_004337204.1| - 0.00038 18.5 0.0 0.0005 18.1 0.0 1.1 1 0 0 1 1 1 1 Helicase AAA_16 PF13191.6 gi|327310307|ref|YP_004337204.1| - 0.022 15.1 0.1 0.066 13.6 0.0 1.8 1 1 1 2 2 2 0 AAA ATPase domain TPR_6 PF13174.6 gi|327310307|ref|YP_004337204.1| - 0.057 14.1 0.1 0.28 11.9 0.1 2.2 1 0 0 1 1 1 0 Tetratricopeptide repeat GARS_C PF02843.16 gi|327310309|ref|YP_004337206.1| - 0.038 14.3 0.9 1.3 9.4 0.1 2.1 1 1 0 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain Peptidase_M32 PF02074.15 gi|327310310|ref|YP_004337207.1| - 1.8e-165 551.4 0.0 2e-165 551.3 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase ABC2_membrane PF01061.24 gi|327310312|ref|YP_004337209.1| - 3.6e-09 36.3 13.2 3.6e-09 36.3 13.2 1.5 1 1 1 2 2 2 1 ABC-2 type transporter Thg1 PF04446.12 gi|327310313|ref|YP_004337210.1| - 5.6e-13 49.0 0.0 7.7e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Rtt106_N PF18215.1 gi|327310313|ref|YP_004337210.1| - 0.0097 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Histone chaperone Rtt106 N-terminal domain Thiolase_N PF00108.23 gi|327310314|ref|YP_004337211.1| - 4.5e-82 275.3 0.0 5.5e-82 275.0 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|327310314|ref|YP_004337211.1| - 8.6e-38 128.8 0.1 7.7e-37 125.7 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|327310314|ref|YP_004337211.1| - 2.2e-06 27.5 3.1 4.6e-06 26.4 1.2 2.2 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|327310314|ref|YP_004337211.1| - 0.059 13.2 0.7 11 5.9 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III His_biosynth PF00977.21 gi|327310315|ref|YP_004337212.1| - 2.6e-82 275.7 0.6 3e-82 275.5 0.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|327310315|ref|YP_004337212.1| - 2.3e-07 30.2 0.0 3.4e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|327310315|ref|YP_004337212.1| - 7.9e-07 28.8 2.3 0.011 15.2 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.21 gi|327310315|ref|YP_004337212.1| - 8.3e-07 28.5 0.0 0.00016 21.0 0.0 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|327310315|ref|YP_004337212.1| - 1.7e-06 27.6 0.5 0.0058 16.0 0.1 2.3 2 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|327310315|ref|YP_004337212.1| - 1.2e-05 24.7 0.1 0.02 14.2 0.0 2.3 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|327310315|ref|YP_004337212.1| - 9.9e-05 21.8 0.1 0.0024 17.3 0.1 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|327310315|ref|YP_004337212.1| - 0.00024 20.2 1.4 0.027 13.5 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 gi|327310315|ref|YP_004337212.1| - 0.013 14.4 0.2 0.074 11.9 0.2 1.9 2 0 0 2 2 2 0 Tryptophan synthase alpha chain PcrB PF01884.17 gi|327310315|ref|YP_004337212.1| - 0.076 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 PcrB family FMN_dh PF01070.18 gi|327310315|ref|YP_004337212.1| - 0.25 10.3 2.1 0.71 8.8 1.9 1.9 1 1 0 1 1 1 0 FMN-dependent dehydrogenase IGPD PF00475.18 gi|327310316|ref|YP_004337213.1| - 2.9e-43 147.6 0.0 3.4e-43 147.4 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|327310317|ref|YP_004337214.1| - 4.9e-48 163.6 0.0 5.5e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein GATase PF00117.28 gi|327310318|ref|YP_004337215.1| - 1.3e-33 116.4 0.0 2.1e-33 115.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|327310318|ref|YP_004337215.1| - 1.9e-32 111.1 0.1 4.1e-32 110.1 0.1 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain Peptidase_C26 PF07722.13 gi|327310318|ref|YP_004337215.1| - 1.7e-11 44.3 0.1 3.7e-10 39.9 0.0 2.8 1 1 1 2 2 2 1 Peptidase C26 NAD_synthase PF02540.17 gi|327310318|ref|YP_004337215.1| - 3.1e-08 33.1 0.0 0.00013 21.1 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|327310318|ref|YP_004337215.1| - 0.0024 16.7 0.0 0.0091 14.8 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|327310318|ref|YP_004337215.1| - 0.0027 17.5 0.0 0.0046 16.7 0.0 1.4 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|327310318|ref|YP_004337215.1| - 0.026 14.0 0.0 0.66 9.4 0.0 2.2 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|327310318|ref|YP_004337215.1| - 0.067 13.2 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|327310318|ref|YP_004337215.1| - 0.14 11.8 0.1 0.45 10.1 0.0 1.9 3 0 0 3 3 3 0 Thiamine biosynthesis protein (ThiI) Glucosamine_iso PF01182.20 gi|327310318|ref|YP_004337215.1| - 0.17 11.8 0.1 16 5.3 0.0 2.3 2 0 0 2 2 2 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EccE PF11203.8 gi|327310318|ref|YP_004337215.1| - 0.47 10.8 3.1 1.9 8.9 0.1 3.2 3 1 1 4 4 4 0 Putative type VII ESX secretion system translocon, EccE CitMHS PF03600.16 gi|327310319|ref|YP_004337216.1| - 5.2e-27 94.8 37.9 8.4e-26 90.9 35.9 2.3 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|327310319|ref|YP_004337216.1| - 0.00084 18.5 10.6 0.00084 18.5 10.6 3.5 3 1 1 4 4 4 3 Sodium:sulfate symporter transmembrane region DUF4147 PF13660.6 gi|327310320|ref|YP_004337217.1| - 1e-53 182.2 0.3 1.5e-53 181.7 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|327310320|ref|YP_004337217.1| - 7.3e-27 93.7 1.1 1.3e-26 92.9 0.2 1.9 2 0 0 2 2 2 1 MOFRL family Na_Ca_ex PF01699.24 gi|327310321|ref|YP_004337218.1| - 2.8e-15 56.6 19.7 2.9e-09 37.0 6.3 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein ILVD_EDD PF00920.21 gi|327310322|ref|YP_004337219.1| - 3.7e-195 649.5 0.0 4.1e-195 649.3 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family COXG PF06240.13 gi|327310323|ref|YP_004337220.1| - 2.1e-21 76.1 0.0 2.5e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|327310323|ref|YP_004337220.1| - 0.001 19.3 0.2 0.0014 18.9 0.2 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport NTP_transf_3 PF12804.7 gi|327310324|ref|YP_004337221.1| - 1e-36 126.7 0.2 1.3e-36 126.4 0.2 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.16 gi|327310324|ref|YP_004337221.1| - 0.00076 18.7 0.0 0.00088 18.5 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like IspD PF01128.19 gi|327310324|ref|YP_004337221.1| - 0.12 12.1 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|327310324|ref|YP_004337221.1| - 0.25 11.2 0.0 0.31 10.9 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase EamA PF00892.20 gi|327310325|ref|YP_004337222.1| - 1.3e-19 70.8 35.0 1.1e-13 51.5 11.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family FGFR3_TM PF18123.1 gi|327310325|ref|YP_004337222.1| - 7.1 6.2 7.0 1.1 8.8 1.5 2.7 2 1 0 2 2 2 0 Fibroblast growth factor receptor 3 transmembrane domain Aldo_ket_red PF00248.21 gi|327310326|ref|YP_004337223.1| - 1.5e-55 188.5 0.0 6.8e-54 183.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Peptidase_M28 PF04389.17 gi|327310327|ref|YP_004337224.1| - 6.6e-09 35.7 0.0 9.4e-08 32.0 0.0 2.3 1 1 1 2 2 2 1 Peptidase family M28 PA PF02225.22 gi|327310327|ref|YP_004337224.1| - 0.0033 17.4 0.0 0.0095 15.9 0.0 1.7 2 0 0 2 2 2 1 PA domain CTP_transf_like PF01467.26 gi|327310328|ref|YP_004337225.1| - 9.7e-09 35.6 0.0 1.2e-08 35.2 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|327310328|ref|YP_004337225.1| - 0.0076 16.1 0.0 0.016 15.1 0.0 1.7 2 0 0 2 2 2 1 FAD synthetase ResIII PF04851.15 gi|327310329|ref|YP_004337226.1| - 4.3e-29 101.7 0.0 1.1e-28 100.4 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|327310329|ref|YP_004337226.1| - 5.7e-18 65.3 0.0 3.5e-17 62.7 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|327310329|ref|YP_004337226.1| - 5.2e-14 51.9 0.0 1.4e-13 50.5 0.0 1.8 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|327310329|ref|YP_004337226.1| - 5.1e-12 45.9 0.0 1.6e-11 44.3 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase ERCC3_RAD25_C PF16203.5 gi|327310329|ref|YP_004337226.1| - 3.3e-11 42.9 0.1 5e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 gi|327310329|ref|YP_004337226.1| - 0.026 14.8 0.0 1.2 9.5 0.1 2.9 2 1 0 2 2 2 0 AAA domain CagS PF16707.5 gi|327310329|ref|YP_004337226.1| - 0.052 13.5 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Cag pathogenicity island protein S of Helicobacter pylori TetR_C_31 PF17940.1 gi|327310329|ref|YP_004337226.1| - 0.16 12.2 1.8 1.7 8.9 0.0 3.0 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain DUF790 PF05626.11 gi|327310330|ref|YP_004337227.1| - 6.5e-97 324.7 0.1 7.3e-97 324.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Peptidase_M20 PF01546.28 gi|327310331|ref|YP_004337228.1| - 4.1e-42 144.2 0.1 5.3e-42 143.9 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|327310331|ref|YP_004337228.1| - 1.4e-19 70.0 0.0 2.3e-19 69.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain ChapFlgA_N PF17656.1 gi|327310331|ref|YP_004337228.1| - 0.055 13.6 0.0 0.15 12.3 0.0 1.8 1 1 0 1 1 1 0 FlgA N-terminal domain DUF1152 PF06626.12 gi|327310332|ref|YP_004337229.1| - 2.3e-84 283.1 0.1 2.6e-84 282.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) ADH_N PF08240.12 gi|327310333|ref|YP_004337230.1| - 3.1e-34 117.1 0.1 4.5e-34 116.6 0.1 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|327310333|ref|YP_004337230.1| - 4.7e-14 52.5 0.1 1.3e-12 47.8 0.1 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|327310333|ref|YP_004337230.1| - 8.4e-12 46.3 0.0 1.7e-11 45.3 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.19 gi|327310333|ref|YP_004337230.1| - 0.004 16.5 0.2 0.0058 15.9 0.2 1.1 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|327310333|ref|YP_004337230.1| - 0.0051 16.1 1.7 0.0073 15.6 1.7 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|327310333|ref|YP_004337230.1| - 0.0082 15.4 0.4 0.016 14.4 0.3 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|327310333|ref|YP_004337230.1| - 0.01 16.3 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|327310333|ref|YP_004337230.1| - 0.02 15.5 0.3 0.038 14.6 0.3 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|327310333|ref|YP_004337230.1| - 0.051 13.2 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.14 gi|327310333|ref|YP_004337230.1| - 0.075 11.7 0.2 0.098 11.3 0.2 1.1 1 0 0 1 1 1 0 HI0933-like protein 2-Hacid_dh_C PF02826.19 gi|327310333|ref|YP_004337230.1| - 0.078 12.3 0.2 0.12 11.7 0.2 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|327310333|ref|YP_004337230.1| - 0.16 12.1 0.1 0.37 10.9 0.1 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase tRNA_deacylase PF04414.12 gi|327310334|ref|YP_004337231.1| - 1.8e-31 109.3 0.0 3.1e-31 108.5 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF5344 PF17279.2 gi|327310335|ref|YP_004337232.1| - 0.036 14.6 0.3 0.071 13.7 0.1 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5344) Hormone_1 PF00103.20 gi|327310335|ref|YP_004337232.1| - 0.061 13.0 0.2 0.067 12.9 0.2 1.1 1 0 0 1 1 1 0 Somatotropin hormone family HK97-gp10_like PF04883.12 gi|327310335|ref|YP_004337232.1| - 0.071 14.1 0.3 0.51 11.3 0.1 2.0 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component DUF601 PF04642.12 gi|327310335|ref|YP_004337232.1| - 0.074 12.5 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF601 MIF4G_like PF09088.11 gi|327310335|ref|YP_004337232.1| - 0.12 12.2 0.1 0.14 11.9 0.1 1.0 1 0 0 1 1 1 0 MIF4G like SCP2 PF02036.17 gi|327310337|ref|YP_004337234.1| - 0.00065 20.2 0.0 0.0008 19.9 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family Class_IIIsignal PF04021.12 gi|327310338|ref|YP_004337235.1| - 0.0059 16.6 2.4 0.0059 16.6 2.4 2.4 2 0 0 2 2 2 1 Class III signal peptide PEGA PF08308.11 gi|327310338|ref|YP_004337235.1| - 0.0093 15.8 2.7 0.11 12.4 0.7 2.4 2 0 0 2 2 2 2 PEGA domain LUD_dom PF02589.15 gi|327310339|ref|YP_004337236.1| - 1.5e-50 171.6 0.1 3.8e-50 170.2 0.1 1.6 1 1 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|327310339|ref|YP_004337236.1| - 8.5e-08 32.5 0.5 1.7e-07 31.6 0.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310339|ref|YP_004337236.1| - 3e-05 24.5 3.1 0.00048 20.6 4.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327310339|ref|YP_004337236.1| - 3.4e-05 24.3 4.2 6.1e-05 23.5 4.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310339|ref|YP_004337236.1| - 8.8e-05 22.5 7.7 0.0038 17.3 8.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|327310339|ref|YP_004337236.1| - 0.0013 18.5 4.3 0.011 15.5 0.2 2.4 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.6 gi|327310339|ref|YP_004337236.1| - 0.007 16.5 4.2 0.056 13.6 4.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Sterol_MT_C PF08498.10 gi|327310339|ref|YP_004337236.1| - 0.084 13.2 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal NAGLU_N PF12971.7 gi|327310339|ref|YP_004337236.1| - 0.09 12.6 0.0 0.28 11.0 0.0 1.9 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain RTX PF02382.15 gi|327310339|ref|YP_004337236.1| - 0.11 12.1 2.7 0.22 11.2 2.7 1.4 1 0 0 1 1 1 0 N-terminal domain in RTX protein Fer4_16 PF13484.6 gi|327310339|ref|YP_004337236.1| - 0.15 13.0 6.5 3.1 8.8 1.0 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|327310339|ref|YP_004337236.1| - 0.16 12.1 5.5 0.61 10.3 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|327310339|ref|YP_004337236.1| - 0.16 12.1 3.3 3.2 8.0 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327310339|ref|YP_004337236.1| - 2.4 8.4 11.0 4.6 7.5 1.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain FAD-oxidase_C PF02913.19 gi|327310340|ref|YP_004337237.1| - 3.2e-46 158.0 0.0 6e-46 157.1 0.0 1.4 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|327310340|ref|YP_004337237.1| - 8.5e-41 139.0 0.3 3.7e-40 136.9 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Gly_kinase PF02595.15 gi|327310340|ref|YP_004337237.1| - 0.078 12.0 0.2 0.13 11.2 0.2 1.3 1 0 0 1 1 1 0 Glycerate kinase family Sugar_tr PF00083.24 gi|327310341|ref|YP_004337238.1| - 1.4e-17 63.7 24.9 1.5e-16 60.3 8.6 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|327310341|ref|YP_004337238.1| - 4.7e-17 61.9 47.8 4.7e-17 61.9 47.8 1.9 1 1 0 1 1 1 1 Major Facilitator Superfamily adh_short_C2 PF13561.6 gi|327310342|ref|YP_004337239.1| - 4.8e-67 225.9 1.1 5.9e-67 225.6 1.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|327310342|ref|YP_004337239.1| - 9.9e-55 185.0 0.1 1.3e-54 184.6 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|327310342|ref|YP_004337239.1| - 4.9e-13 49.4 0.1 8.9e-13 48.5 0.0 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|327310342|ref|YP_004337239.1| - 1.2e-06 28.2 0.7 3e-05 23.6 0.2 2.4 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|327310342|ref|YP_004337239.1| - 0.0033 17.3 1.7 0.0047 16.8 1.6 1.6 1 1 0 1 1 1 1 NAD(P)H-binding THF_DHG_CYH_C PF02882.19 gi|327310342|ref|YP_004337239.1| - 0.0082 15.5 0.0 0.037 13.3 0.0 2.1 1 1 1 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DFP PF04127.15 gi|327310342|ref|YP_004337239.1| - 0.028 14.3 0.1 0.069 13.0 0.1 1.6 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Shikimate_DH PF01488.20 gi|327310342|ref|YP_004337239.1| - 0.071 13.2 0.6 0.66 10.0 0.1 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Hydrolase PF00702.26 gi|327310342|ref|YP_004337239.1| - 0.1 12.8 0.1 0.3 11.4 0.0 1.8 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase NmrA PF05368.13 gi|327310342|ref|YP_004337239.1| - 0.14 11.7 0.7 0.23 11.0 0.3 1.5 2 0 0 2 2 2 0 NmrA-like family DUF192 PF02643.15 gi|327310343|ref|YP_004337240.1| - 1.8e-10 40.9 0.0 2.4e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 PyrI PF01948.18 gi|327310344|ref|YP_004337241.1| - 3.4e-35 120.2 1.9 4.4e-35 119.8 1.9 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|327310344|ref|YP_004337241.1| - 2.9e-15 55.9 1.5 5.1e-15 55.1 1.5 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Saf_2TM PF18303.1 gi|327310344|ref|YP_004337241.1| - 0.14 11.7 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 SAVED-fused 2TM effector domain OMPdecase PF00215.24 gi|327310345|ref|YP_004337242.1| - 1.6e-14 54.1 0.5 3.8e-13 49.6 0.5 2.0 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family OTCace_N PF02729.21 gi|327310346|ref|YP_004337243.1| - 8e-47 159.0 0.0 1.1e-46 158.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|327310346|ref|YP_004337243.1| - 6.4e-26 91.3 0.0 1e-25 90.6 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF2250 PF10007.9 gi|327310347|ref|YP_004337244.1| - 8.1e-06 25.9 0.0 2.8e-05 24.1 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|327310347|ref|YP_004337244.1| - 0.12 12.1 0.0 0.32 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|327310347|ref|YP_004337244.1| - 0.17 11.8 0.4 1.2 9.1 0.1 2.1 2 0 0 2 2 2 0 MarR family PIN_9 PF18477.1 gi|327310348|ref|YP_004337245.1| - 0.034 14.5 0.1 0.042 14.2 0.1 1.4 1 1 0 1 1 1 0 PIN like domain DAO PF01266.24 gi|327310349|ref|YP_004337246.1| - 7.1e-11 42.3 8.3 1e-06 28.6 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|327310349|ref|YP_004337246.1| - 6.1e-06 25.7 0.0 1.2e-05 24.8 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327310349|ref|YP_004337246.1| - 0.00047 20.3 2.2 0.0012 19.1 1.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|327310349|ref|YP_004337246.1| - 0.007 15.7 0.6 0.014 14.6 0.6 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|327310349|ref|YP_004337246.1| - 0.58 9.2 3.4 0.31 10.0 1.3 1.5 2 0 0 2 2 2 0 FAD binding domain Imm41 PF15592.6 gi|327310351|ref|YP_004337248.1| - 0.25 11.7 0.0 0.37 11.1 0.0 1.2 1 0 0 1 1 1 0 Immunity protein 41 AA_kinase PF00696.28 gi|327310353|ref|YP_004337250.1| - 6.3e-28 98.0 0.2 2.1e-27 96.3 0.2 1.7 1 1 0 1 1 1 1 Amino acid kinase family tRNA-synt_His PF13393.6 gi|327310354|ref|YP_004337251.1| - 7.6e-67 225.8 0.9 2.1e-66 224.3 0.4 1.8 2 0 0 2 2 2 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|327310354|ref|YP_004337251.1| - 3.1e-13 49.7 0.4 6.4e-13 48.7 0.4 1.5 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|327310354|ref|YP_004337251.1| - 9e-08 32.3 0.0 6e-07 29.6 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|327310354|ref|YP_004337251.1| - 1.5e-05 24.6 0.2 5.5e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) CBS PF00571.28 gi|327310354|ref|YP_004337251.1| - 0.046 14.2 0.2 0.2 12.2 0.1 2.2 2 0 0 2 2 2 0 CBS domain ADH_zinc_N PF00107.26 gi|327310354|ref|YP_004337251.1| - 0.11 12.4 0.1 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Sacchrp_dh_C PF16653.5 gi|327310355|ref|YP_004337252.1| - 2.8e-27 96.5 0.0 3.4e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|327310355|ref|YP_004337252.1| - 1.8e-06 28.2 0.1 0.00064 20.0 0.1 2.3 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|327310355|ref|YP_004337252.1| - 0.0023 17.6 0.0 0.005 16.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.24 gi|327310355|ref|YP_004337252.1| - 0.004 17.6 0.0 0.035 14.5 0.0 2.2 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|327310355|ref|YP_004337252.1| - 0.01 15.4 0.5 0.028 14.0 0.4 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|327310355|ref|YP_004337252.1| - 0.047 14.0 0.1 0.11 12.7 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain CoA_binding_2 PF13380.6 gi|327310355|ref|YP_004337252.1| - 0.059 13.9 0.1 0.34 11.4 0.1 2.3 2 1 0 2 2 2 0 CoA binding domain Gp_dh_N PF00044.24 gi|327310355|ref|YP_004337252.1| - 0.17 12.2 0.2 0.38 11.1 0.1 1.7 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NucS PF01939.16 gi|327310356|ref|YP_004337253.1| - 0.00036 19.9 0.1 0.00054 19.4 0.1 1.2 1 0 0 1 1 1 1 Endonuclease NucS DUF4143 PF13635.6 gi|327310356|ref|YP_004337253.1| - 0.0026 17.9 0.0 0.0038 17.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) UPF0102 PF02021.17 gi|327310356|ref|YP_004337253.1| - 0.012 15.9 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 E3_binding PF02817.17 gi|327310356|ref|YP_004337253.1| - 0.19 12.1 0.3 2.1 8.7 0.0 2.5 3 0 0 3 3 3 0 e3 binding domain IF-2B PF01008.17 gi|327310357|ref|YP_004337254.1| - 3e-68 230.1 0.0 3.6e-68 229.8 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family GATase_7 PF13537.6 gi|327310357|ref|YP_004337254.1| - 0.027 14.4 0.0 0.084 12.8 0.0 1.8 2 0 0 2 2 2 0 Glutamine amidotransferase domain Cdc6_C PF09079.11 gi|327310358|ref|YP_004337255.1| - 0.056 13.4 0.1 0.077 13.0 0.1 1.2 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain Methyltr_RsmB-F PF01189.17 gi|327310359|ref|YP_004337256.1| - 1.2e-24 87.1 0.0 2.1e-24 86.3 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|327310359|ref|YP_004337256.1| - 3.6e-15 55.7 0.5 5.9e-15 55.0 0.5 1.4 1 0 0 1 1 1 1 PUA domain Methyltransf_15 PF09445.10 gi|327310359|ref|YP_004337256.1| - 0.0035 16.9 0.0 0.0053 16.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltr_RsmF_N PF17125.5 gi|327310359|ref|YP_004337256.1| - 0.015 15.8 0.1 0.11 13.0 0.0 2.1 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF PUA_3 PF17785.1 gi|327310359|ref|YP_004337256.1| - 0.17 11.7 0.1 0.75 9.7 0.1 2.1 2 0 0 2 2 2 0 PUA-like domain DUF4428 PF14471.6 gi|327310360|ref|YP_004337257.1| - 0.0091 15.9 0.1 0.0091 15.9 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) zf-C4_ClpX PF06689.13 gi|327310360|ref|YP_004337257.1| - 0.019 14.8 3.0 0.019 14.8 3.0 2.5 2 2 0 2 2 2 0 ClpX C4-type zinc finger PhnA_Zn_Ribbon PF08274.12 gi|327310360|ref|YP_004337257.1| - 0.052 13.5 0.2 0.052 13.5 0.2 2.2 3 1 0 3 3 3 0 PhnA Zinc-Ribbon zf-H2C2_2 PF13465.6 gi|327310360|ref|YP_004337257.1| - 0.51 10.9 0.1 0.51 10.9 0.1 3.0 3 0 0 3 3 3 0 Zinc-finger double domain Tnp_zf-ribbon_2 PF13842.6 gi|327310360|ref|YP_004337257.1| - 5 8.0 9.6 4.7 8.1 0.9 2.6 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon AMMECR1 PF01871.17 gi|327310361|ref|YP_004337258.1| - 3.1e-45 153.8 0.0 3.7e-45 153.5 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 MMR_HSR1 PF01926.23 gi|327310362|ref|YP_004337259.1| - 4.1e-17 62.3 0.1 8e-14 51.7 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|327310362|ref|YP_004337259.1| - 7.3e-10 38.6 0.0 2.9e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|327310362|ref|YP_004337259.1| - 1.8e-08 34.5 0.0 3.1e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|327310362|ref|YP_004337259.1| - 3e-06 27.4 0.1 0.0048 17.0 0.0 2.8 3 0 0 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|327310362|ref|YP_004337259.1| - 4.4e-05 23.1 0.1 0.003 17.1 0.1 3.2 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain PAS_8 PF13188.7 gi|327310362|ref|YP_004337259.1| - 0.00029 20.8 0.1 0.0011 19.0 0.0 2.0 2 0 0 2 2 2 1 PAS domain AAA_18 PF13238.6 gi|327310362|ref|YP_004337259.1| - 0.029 14.9 0.0 0.059 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.16 gi|327310362|ref|YP_004337259.1| - 0.039 13.3 0.0 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 AIG1 family Arf PF00025.21 gi|327310362|ref|YP_004337259.1| - 0.054 12.9 0.0 0.095 12.2 0.0 1.4 1 0 0 1 1 1 0 ADP-ribosylation factor family ATP-synt_D PF01813.17 gi|327310363|ref|YP_004337260.1| - 8.3e-39 133.5 9.2 9.5e-39 133.3 9.2 1.0 1 0 0 1 1 1 1 ATP synthase subunit D Trans_reg_C PF00486.28 gi|327310364|ref|YP_004337261.1| - 0.037 14.1 0.2 0.038 14.1 0.2 1.2 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal IKKbetaNEMObind PF12179.8 gi|327310364|ref|YP_004337261.1| - 0.045 13.8 0.1 0.063 13.3 0.1 1.3 1 0 0 1 1 1 0 I-kappa-kinase-beta NEMO binding domain Baculo_PEP_C PF04513.12 gi|327310364|ref|YP_004337261.1| - 0.057 13.5 0.2 0.057 13.5 0.2 1.0 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4403 PF14356.6 gi|327310364|ref|YP_004337261.1| - 0.09 11.4 0.4 0.086 11.5 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4403) YojJ PF10372.9 gi|327310364|ref|YP_004337261.1| - 0.095 12.8 3.7 0.94 9.6 3.1 1.9 1 1 1 2 2 2 0 Bacterial membrane-spanning protein N-terminus Peptidase_M41 PF01434.18 gi|327310364|ref|YP_004337261.1| - 0.11 12.3 1.2 0.12 12.2 1.2 1.0 1 0 0 1 1 1 0 Peptidase family M41 ATP-synt_C PF00137.21 gi|327310365|ref|YP_004337262.1| - 1.8e-19 69.8 15.3 1.8e-19 69.8 15.3 1.4 2 0 0 2 2 2 1 ATP synthase subunit C FtsX PF02687.21 gi|327310365|ref|YP_004337262.1| - 0.098 13.1 8.2 0.042 14.3 6.2 1.4 1 1 0 1 1 1 0 FtsX-like permease family Ecm33 PF12454.8 gi|327310365|ref|YP_004337262.1| - 0.18 12.0 0.2 0.18 12.0 0.2 2.0 2 0 0 2 2 2 0 GPI-anchored cell wall organization protein RseC_MucC PF04246.12 gi|327310365|ref|YP_004337262.1| - 1.4 8.8 7.8 0.41 10.6 2.9 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC vATP-synt_AC39 PF01992.16 gi|327310366|ref|YP_004337263.1| - 1.5e-20 74.0 0.0 1.6e-20 73.9 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ANAPC5 PF12862.7 gi|327310366|ref|YP_004337263.1| - 0.052 13.6 0.1 3.5 7.8 0.0 2.4 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 5 V-ATPase_G_2 PF16999.5 gi|327310367|ref|YP_004337264.1| - 7.3e-07 29.6 11.2 0.00063 20.1 4.8 2.1 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit DivIVA PF05103.13 gi|327310367|ref|YP_004337264.1| - 0.00042 20.4 13.9 0.00052 20.1 13.9 1.1 1 0 0 1 1 1 1 DivIVA protein ATP-synt_B PF00430.18 gi|327310367|ref|YP_004337264.1| - 0.00079 19.5 15.9 0.0018 18.3 6.5 2.1 1 1 0 2 2 2 1 ATP synthase B/B' CF(0) ISG65-75 PF11727.8 gi|327310367|ref|YP_004337264.1| - 0.0052 16.0 7.0 0.0065 15.7 7.0 1.2 1 0 0 1 1 1 1 Invariant surface glycoprotein DASH_Duo1 PF08651.10 gi|327310367|ref|YP_004337264.1| - 0.015 15.1 3.7 0.078 12.8 1.4 2.2 1 1 1 2 2 2 0 DASH complex subunit Duo1 rve_3 PF13683.6 gi|327310367|ref|YP_004337264.1| - 0.021 14.6 0.2 0.15 11.9 0.2 2.2 1 1 1 2 2 2 0 Integrase core domain PTPA PF03095.15 gi|327310367|ref|YP_004337264.1| - 0.024 14.1 1.1 0.028 13.9 1.1 1.1 1 0 0 1 1 1 0 Phosphotyrosyl phosphate activator (PTPA) protein V-ATPase_G PF03179.15 gi|327310367|ref|YP_004337264.1| - 0.036 14.6 16.2 0.8 10.3 7.4 2.6 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit AHSP PF09236.10 gi|327310367|ref|YP_004337264.1| - 0.04 14.3 4.1 0.28 11.6 4.1 1.9 1 1 0 1 1 1 0 Alpha-haemoglobin stabilising protein DUF3584 PF12128.8 gi|327310367|ref|YP_004337264.1| - 0.041 11.4 10.8 0.045 11.3 10.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF842 PF05811.13 gi|327310367|ref|YP_004337264.1| - 0.041 13.6 2.3 0.047 13.4 2.3 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF842) OmpH PF03938.14 gi|327310367|ref|YP_004337264.1| - 0.041 14.2 14.7 0.05 13.9 14.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Prominin PF05478.11 gi|327310367|ref|YP_004337264.1| - 0.049 11.6 5.6 0.058 11.4 5.6 1.0 1 0 0 1 1 1 0 Prominin DUF2564 PF10819.8 gi|327310367|ref|YP_004337264.1| - 0.055 13.9 5.0 0.79 10.2 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2564) MCPVI PF02993.14 gi|327310367|ref|YP_004337264.1| - 0.055 13.3 4.6 0.063 13.1 4.6 1.0 1 0 0 1 1 1 0 Minor capsid protein VI Arm-DNA-bind_3 PF13356.6 gi|327310367|ref|YP_004337264.1| - 0.13 12.6 1.4 1 9.8 0.4 2.2 2 0 0 2 2 2 0 Arm DNA-binding domain Mer2 PF09074.10 gi|327310367|ref|YP_004337264.1| - 0.14 11.9 8.5 0.16 11.7 8.5 1.0 1 0 0 1 1 1 0 Mer2 Nnf1 PF03980.14 gi|327310367|ref|YP_004337264.1| - 0.2 12.1 10.9 0.27 11.6 10.5 1.5 1 1 0 1 1 1 0 Nnf1 Muted PF14942.6 gi|327310367|ref|YP_004337264.1| - 0.21 12.0 11.9 0.39 11.0 11.9 1.4 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein SIMPL PF04402.14 gi|327310367|ref|YP_004337264.1| - 0.23 11.9 6.0 0.39 11.1 6.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF541) AAA_17 PF13207.6 gi|327310367|ref|YP_004337264.1| - 0.27 11.6 4.9 0.37 11.2 4.8 1.3 1 1 0 1 1 1 0 AAA domain DUF445 PF04286.12 gi|327310367|ref|YP_004337264.1| - 0.28 10.9 8.0 0.15 11.8 4.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF445) DUF4615 PF15393.6 gi|327310367|ref|YP_004337264.1| - 0.28 11.7 6.1 0.36 11.4 6.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4615) Peptidase_M41 PF01434.18 gi|327310367|ref|YP_004337264.1| - 0.37 10.6 8.5 1.6 8.5 1.5 2.0 1 1 1 2 2 2 0 Peptidase family M41 YtxH PF12732.7 gi|327310367|ref|YP_004337264.1| - 0.47 11.0 9.6 1.6e+02 2.9 9.6 2.1 1 1 0 1 1 1 0 YtxH-like protein Mit_KHE1 PF10173.9 gi|327310367|ref|YP_004337264.1| - 0.5 10.4 3.0 0.61 10.1 3.0 1.1 1 0 0 1 1 1 0 Mitochondrial K+-H+ exchange-related DUF4972 PF16342.5 gi|327310367|ref|YP_004337264.1| - 0.5 10.0 8.8 0.37 10.5 1.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4972) MCD_N PF17408.2 gi|327310367|ref|YP_004337264.1| - 0.61 10.3 4.5 0.44 10.7 1.5 2.0 1 1 1 2 2 2 0 Malonyl-CoA decarboxylase N-terminal domain HXXSHH PF07586.11 gi|327310367|ref|YP_004337264.1| - 0.67 9.5 3.7 7.3 6.1 3.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1552) KfrA_N PF11740.8 gi|327310367|ref|YP_004337264.1| - 0.75 10.5 8.3 1.8 9.3 8.2 1.7 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term MCU PF04678.13 gi|327310367|ref|YP_004337264.1| - 0.82 9.7 8.6 4.4 7.4 8.6 1.8 1 1 0 1 1 1 0 Mitochondrial calcium uniporter LMBR1 PF04791.16 gi|327310367|ref|YP_004337264.1| - 0.96 8.3 6.6 1 8.2 6.6 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4065 PF13274.6 gi|327310367|ref|YP_004337264.1| - 0.97 10.3 5.3 5 8.1 5.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4065) Remorin_C PF03763.13 gi|327310367|ref|YP_004337264.1| - 1 9.3 13.4 4.4 7.2 1.4 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region CarD_CdnL_TRCF PF02559.16 gi|327310367|ref|YP_004337264.1| - 1 10.1 5.8 0.22 12.3 2.2 1.8 2 1 0 2 2 1 0 CarD-like/TRCF domain Occludin_ELL PF07303.13 gi|327310367|ref|YP_004337264.1| - 1.4 9.7 8.9 0.42 11.4 0.9 2.1 1 1 1 2 2 2 0 Occludin homology domain TMPIT PF07851.13 gi|327310367|ref|YP_004337264.1| - 1.6 7.9 8.2 1.7 7.8 8.2 1.0 1 0 0 1 1 1 0 TMPIT-like protein DUF5446 PF17522.2 gi|327310367|ref|YP_004337264.1| - 1.6 9.0 11.2 0.18 12.0 2.6 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5446) Caudo_TAP PF02413.17 gi|327310367|ref|YP_004337264.1| - 1.6 8.9 9.2 0.66 10.1 1.7 2.1 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK HAUS6_N PF14661.6 gi|327310367|ref|YP_004337264.1| - 3.2 7.3 9.7 4 7.0 9.7 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus zf-C4H2 PF10146.9 gi|327310367|ref|YP_004337264.1| - 6.5 7.0 11.0 20 5.4 10.9 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein Band_7 PF01145.25 gi|327310368|ref|YP_004337265.1| - 3.3e-35 121.7 4.1 4.6e-35 121.2 4.1 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|327310368|ref|YP_004337265.1| - 0.00012 21.9 0.2 0.00029 20.6 0.1 1.7 2 0 0 2 2 2 1 SPFH domain-Band 7 family pPIWI_RE_REase PF18154.1 gi|327310368|ref|YP_004337265.1| - 0.037 14.0 1.6 0.075 13.0 0.2 2.0 2 0 0 2 2 2 0 REase associating with pPIWI_RE Glyco_hydro_80 PF13647.6 gi|327310368|ref|YP_004337265.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A NfeD PF01957.18 gi|327310369|ref|YP_004337266.1| - 1.3e-10 41.5 0.3 4.9e-10 39.6 0.3 2.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|327310369|ref|YP_004337266.1| - 0.00012 21.2 0.1 0.00021 20.4 0.1 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|327310369|ref|YP_004337266.1| - 0.00018 21.4 0.0 0.00031 20.7 0.0 1.3 1 0 0 1 1 1 1 Clp protease PhoR PF11808.8 gi|327310370|ref|YP_004337267.1| - 0.028 14.8 0.1 0.032 14.6 0.1 1.1 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR GspL_C PF12693.7 gi|327310371|ref|YP_004337268.1| - 0.035 14.0 0.1 0.048 13.5 0.1 1.3 1 0 0 1 1 1 0 GspL periplasmic domain SKG6 PF08693.10 gi|327310371|ref|YP_004337268.1| - 0.27 10.7 2.1 0.33 10.4 0.9 1.7 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF2070 PF09843.9 gi|327310372|ref|YP_004337269.1| - 0.019 13.3 6.0 0.023 13.0 6.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) NERD PF08378.11 gi|327310373|ref|YP_004337270.1| - 2.3e-06 28.0 0.0 3.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.12 gi|327310373|ref|YP_004337270.1| - 6.8e-06 26.1 0.0 9.6e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease Pyr_redox_2 PF07992.14 gi|327310374|ref|YP_004337271.1| - 2.8e-16 59.6 5.1 2.7e-15 56.4 5.1 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327310374|ref|YP_004337271.1| - 1.5e-07 31.5 1.8 4.3e-06 26.9 0.5 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|327310374|ref|YP_004337271.1| - 2.9e-07 29.9 8.3 6.6e-06 25.5 1.9 2.7 3 0 0 3 3 3 2 FAD binding domain Pyr_redox PF00070.27 gi|327310374|ref|YP_004337271.1| - 3.2e-07 30.8 4.3 0.0011 19.5 0.1 2.7 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|327310374|ref|YP_004337271.1| - 5.5e-06 26.0 3.3 0.0023 17.4 0.8 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 gi|327310374|ref|YP_004337271.1| - 2.9e-05 23.8 3.6 0.0051 16.4 1.3 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|327310374|ref|YP_004337271.1| - 9.1e-05 21.9 0.4 0.00061 19.1 0.4 2.0 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|327310374|ref|YP_004337271.1| - 0.00035 19.9 0.3 0.0023 17.2 0.1 2.2 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|327310374|ref|YP_004337271.1| - 0.00088 18.4 1.4 0.058 12.4 0.3 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|327310374|ref|YP_004337271.1| - 0.0013 17.9 1.4 0.014 14.5 0.8 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|327310374|ref|YP_004337271.1| - 0.0014 17.9 0.3 1.1 8.4 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|327310374|ref|YP_004337271.1| - 0.0031 16.3 0.6 0.041 12.6 0.4 2.3 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|327310374|ref|YP_004337271.1| - 0.0033 16.7 1.9 0.2 11.0 0.1 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|327310374|ref|YP_004337271.1| - 0.016 15.6 1.2 4.4 7.8 0.1 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding HAD_2 PF13419.6 gi|327310375|ref|YP_004337272.1| - 2.9e-13 50.3 0.0 3.8e-13 49.9 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|327310375|ref|YP_004337272.1| - 2.5e-09 37.7 0.0 8.1e-09 36.1 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|327310375|ref|YP_004337272.1| - 1.1e-08 35.0 0.0 2.7e-08 33.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like PNK3P PF08645.11 gi|327310375|ref|YP_004337272.1| - 0.0082 15.9 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Polynucleotide kinase 3 phosphatase HAD PF12710.7 gi|327310375|ref|YP_004337272.1| - 0.017 15.6 0.2 0.028 14.8 0.2 1.5 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase CENP-N PF05238.13 gi|327310375|ref|YP_004337272.1| - 0.017 14.4 0.0 0.022 14.1 0.0 1.1 1 0 0 1 1 1 0 Kinetochore protein CHL4 like Methyltransf_11 PF08241.12 gi|327310375|ref|YP_004337272.1| - 0.081 13.6 0.0 0.21 12.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain MMPL PF03176.15 gi|327310376|ref|YP_004337273.1| - 9.6e-66 222.0 35.3 5.3e-36 124.2 15.5 2.5 3 0 0 3 3 3 2 MMPL family Sarcoglycan_1 PF04790.13 gi|327310376|ref|YP_004337273.1| - 0.038 13.3 0.6 0.088 12.1 0.6 1.5 1 0 0 1 1 1 0 Sarcoglycan complex subunit protein MacB_PCD PF12704.7 gi|327310377|ref|YP_004337274.1| - 2.6e-11 44.2 2.5 2.6e-11 44.2 2.5 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|327310377|ref|YP_004337274.1| - 4.3e-09 36.7 7.0 4.3e-09 36.7 7.0 3.3 3 0 0 3 3 3 1 FtsX-like permease family Dopey_N PF04118.14 gi|327310377|ref|YP_004337274.1| - 0.0023 17.1 0.1 0.0039 16.4 0.1 1.4 1 0 0 1 1 1 1 Dopey, N-terminal ABC_tran PF00005.27 gi|327310378|ref|YP_004337275.1| - 1.7e-30 106.3 0.0 2.5e-30 105.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310378|ref|YP_004337275.1| - 3e-13 50.2 1.6 2.9e-08 33.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327310378|ref|YP_004337275.1| - 4.7e-05 22.9 0.1 0.045 13.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|327310378|ref|YP_004337275.1| - 0.00015 21.7 0.2 0.00046 20.1 0.1 1.8 1 1 1 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|327310378|ref|YP_004337275.1| - 0.0002 21.0 0.2 0.00043 20.0 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|327310378|ref|YP_004337275.1| - 0.00043 20.7 0.1 0.00069 20.0 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|327310378|ref|YP_004337275.1| - 0.002 18.7 0.0 0.0032 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|327310378|ref|YP_004337275.1| - 0.0023 18.1 0.0 0.0031 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327310378|ref|YP_004337275.1| - 0.0023 18.2 0.7 0.031 14.6 0.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|327310378|ref|YP_004337275.1| - 0.0032 17.2 0.0 0.011 15.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|327310378|ref|YP_004337275.1| - 0.0088 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|327310378|ref|YP_004337275.1| - 0.037 14.3 0.0 0.23 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|327310378|ref|YP_004337275.1| - 0.054 12.7 0.0 0.93 8.6 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|327310378|ref|YP_004337275.1| - 0.075 12.1 0.3 0.14 11.2 0.3 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.6 gi|327310378|ref|YP_004337275.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 1 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|327310378|ref|YP_004337275.1| - 0.11 12.9 0.1 0.75 10.2 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|327310378|ref|YP_004337275.1| - 0.13 11.8 1.5 1.2 8.7 1.5 2.4 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|327310378|ref|YP_004337275.1| - 0.14 12.4 0.1 0.32 11.3 0.1 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.9 gi|327310378|ref|YP_004337275.1| - 0.56 8.9 2.1 15 4.3 0.1 2.2 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Laminin_II PF06009.12 gi|327310379|ref|YP_004337276.1| - 1.7 8.6 9.4 0.59 10.2 2.1 3.1 2 1 1 3 3 3 0 Laminin Domain II DUF745 PF05335.13 gi|327310379|ref|YP_004337276.1| - 2.9 7.6 5.5 20 4.8 1.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF745) Zn-ribbon_8 PF09723.10 gi|327310381|ref|YP_004337278.1| - 0.017 15.2 0.1 4.2 7.6 0.0 2.7 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|327310381|ref|YP_004337278.1| - 0.038 14.0 0.2 2 8.4 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|327310381|ref|YP_004337278.1| - 0.043 13.8 1.9 5.7 7.0 0.0 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-C2H2_9 PF16293.5 gi|327310381|ref|YP_004337278.1| - 0.76 9.7 2.6 20 5.1 0.2 2.8 2 1 1 3 3 3 0 C2H2 type zinc-finger (1 copy) zf-FPG_IleRS PF06827.14 gi|327310381|ref|YP_004337278.1| - 1.3 9.0 4.0 28 4.7 0.0 3.2 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.6 gi|327310381|ref|YP_004337278.1| - 1.5 8.3 4.7 7.7 6.1 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DHHA1 PF02272.19 gi|327310382|ref|YP_004337279.1| - 2e-07 31.5 0.8 3.1e-07 30.9 0.8 1.4 1 0 0 1 1 1 1 DHHA1 domain RNase_PH_C PF03725.15 gi|327310383|ref|YP_004337280.1| - 0.087 12.9 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 3' exoribonuclease family, domain 2 Prefoldin_2 PF01920.20 gi|327310384|ref|YP_004337281.1| - 1.9e-24 85.6 13.5 2.4e-24 85.3 13.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit SbcD_C PF12320.8 gi|327310384|ref|YP_004337281.1| - 0.0029 17.9 2.7 0.0032 17.7 2.0 1.4 1 1 0 1 1 1 1 Type 5 capsule protein repressor C-terminal domain DUF848 PF05852.11 gi|327310384|ref|YP_004337281.1| - 0.018 15.2 5.6 0.031 14.4 5.6 1.5 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF4510 PF14971.6 gi|327310384|ref|YP_004337281.1| - 0.034 14.5 5.3 0.12 12.8 5.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4510) DivIC PF04977.15 gi|327310384|ref|YP_004337281.1| - 0.58 10.0 11.3 0.28 11.0 1.5 2.3 2 0 0 2 2 2 0 Septum formation initiator Enkurin PF13864.6 gi|327310384|ref|YP_004337281.1| - 0.66 10.4 9.6 0.33 11.4 0.6 2.4 1 1 1 2 2 2 0 Calmodulin-binding HlyD_2 PF12700.7 gi|327310384|ref|YP_004337281.1| - 0.72 8.5 4.8 0.81 8.4 4.8 1.0 1 0 0 1 1 1 0 HlyD family secretion protein TPR_MLP1_2 PF07926.12 gi|327310384|ref|YP_004337281.1| - 2.2 8.3 15.0 18 5.4 14.5 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein FlaC_arch PF05377.11 gi|327310384|ref|YP_004337281.1| - 2.3 8.7 6.2 1.1 9.7 1.6 2.3 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF1640 PF07798.11 gi|327310384|ref|YP_004337281.1| - 2.5 8.1 10.1 13 5.8 10.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DUF3086 PF11285.8 gi|327310384|ref|YP_004337281.1| - 2.9 6.9 7.8 0.23 10.5 1.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) Snf7 PF03357.21 gi|327310384|ref|YP_004337281.1| - 3 7.4 12.5 1.1 8.8 3.8 2.1 1 1 0 2 2 2 0 Snf7 Pcc1 PF09341.10 gi|327310385|ref|YP_004337282.1| - 0.045 13.9 0.0 0.049 13.8 0.0 1.1 1 0 0 1 1 1 0 Transcription factor Pcc1 TubC_N PF18563.1 gi|327310385|ref|YP_004337282.1| - 0.046 13.7 0.3 0.087 12.8 0.0 1.6 2 0 0 2 2 2 0 TubC N-terminal docking domain DUF2218 PF09981.9 gi|327310385|ref|YP_004337282.1| - 0.049 14.0 0.0 0.051 14.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) Pyridox_ox_2 PF12900.7 gi|327310386|ref|YP_004337283.1| - 0.064 13.3 0.0 0.85 9.6 0.0 2.3 1 1 1 2 2 2 0 Pyridoxamine 5'-phosphate oxidase Ribosomal_L37ae PF01780.19 gi|327310387|ref|YP_004337284.1| - 6.2e-28 96.7 0.1 7.3e-28 96.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|327310387|ref|YP_004337284.1| - 0.00025 21.0 1.1 0.00025 21.0 1.1 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-tcix PF14952.6 gi|327310387|ref|YP_004337284.1| - 0.0022 17.5 3.5 0.32 10.7 0.1 2.3 2 0 0 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding IBR PF01485.21 gi|327310387|ref|YP_004337284.1| - 0.0062 16.7 0.0 0.0092 16.2 0.0 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf-H2C2_2 PF13465.6 gi|327310387|ref|YP_004337284.1| - 0.01 16.3 1.5 0.81 10.2 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_3 PF13878.6 gi|327310387|ref|YP_004337284.1| - 0.011 15.6 0.1 0.63 9.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.11 gi|327310387|ref|YP_004337284.1| - 0.021 14.7 0.8 0.034 14.0 0.2 1.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|327310387|ref|YP_004337284.1| - 0.021 14.7 2.2 3.9 7.5 0.1 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-RING_7 PF02591.15 gi|327310387|ref|YP_004337284.1| - 0.022 15.0 1.3 0.62 10.3 0.2 2.8 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|327310387|ref|YP_004337284.1| - 0.035 13.9 2.3 4.7 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|327310387|ref|YP_004337284.1| - 0.065 13.4 1.0 4.4 7.5 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|327310387|ref|YP_004337284.1| - 0.072 12.8 0.5 0.54 10.0 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|327310387|ref|YP_004337284.1| - 0.12 12.3 3.3 3.9 7.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|327310387|ref|YP_004337284.1| - 0.22 11.4 5.0 1 9.2 0.1 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HalOD2 PF18547.1 gi|327310387|ref|YP_004337284.1| - 0.27 11.1 2.6 0.56 10.1 0.2 2.3 2 0 0 2 2 2 0 Halobacterial output domain 2 Ribosomal_L32p PF01783.23 gi|327310387|ref|YP_004337284.1| - 0.38 11.1 3.0 1.4 9.2 3.0 1.9 1 1 0 1 1 1 0 Ribosomal L32p protein family DUF1610 PF07754.11 gi|327310387|ref|YP_004337284.1| - 0.43 10.6 6.1 7.5 6.6 0.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|327310387|ref|YP_004337284.1| - 0.43 10.1 3.6 8.7 5.9 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|327310387|ref|YP_004337284.1| - 0.56 9.8 2.1 5.2 6.7 0.3 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-TFIIB PF13453.6 gi|327310387|ref|YP_004337284.1| - 0.6 9.5 6.3 3.2 7.2 6.2 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|327310387|ref|YP_004337284.1| - 0.8 9.5 4.9 6.6 6.6 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|327310387|ref|YP_004337284.1| - 1.1 9.7 4.6 13 6.2 0.6 3.0 2 1 1 3 3 3 0 Probable Zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|327310387|ref|YP_004337284.1| - 1.2 9.0 3.9 36 4.2 0.3 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin_2 PF18073.1 gi|327310387|ref|YP_004337284.1| - 1.4 8.7 8.9 1.6 8.5 0.8 2.5 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|327310387|ref|YP_004337284.1| - 1.5 8.9 5.8 6.1 7.0 1.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNase_PH PF01138.21 gi|327310388|ref|YP_004337285.1| - 1e-23 84.3 0.0 1.8e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|327310388|ref|YP_004337285.1| - 1.2e-13 50.9 0.0 2.1e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|327310389|ref|YP_004337286.1| - 1.3e-35 122.8 0.0 1.9e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|327310389|ref|YP_004337286.1| - 4.2e-16 58.7 0.0 8.2e-16 57.8 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|327310390|ref|YP_004337287.1| - 3.2e-09 37.0 0.1 5.5e-09 36.2 0.1 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|327310390|ref|YP_004337287.1| - 2.2e-05 24.2 0.1 4e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|327310390|ref|YP_004337287.1| - 0.0031 17.8 0.0 0.0097 16.2 0.0 1.9 1 0 0 1 1 1 1 S1 RNA binding domain KH_2 PF07650.17 gi|327310390|ref|YP_004337287.1| - 0.02 14.7 0.7 0.058 13.2 0.7 1.9 1 1 0 1 1 1 0 KH domain KH_4 PF13083.6 gi|327310390|ref|YP_004337287.1| - 0.078 12.9 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 KH domain SBDS PF01172.18 gi|327310391|ref|YP_004337288.1| - 3.1e-23 81.6 0.1 5.5e-23 80.9 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|327310391|ref|YP_004337288.1| - 4.5e-20 71.8 0.3 7.7e-20 71.0 0.3 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain Proteasome PF00227.26 gi|327310393|ref|YP_004337290.1| - 9.5e-59 198.1 0.0 2.3e-58 196.8 0.0 1.6 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|327310393|ref|YP_004337290.1| - 9.4e-13 47.6 0.5 2.3e-12 46.3 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature RNA_binding PF01877.17 gi|327310394|ref|YP_004337291.1| - 2.5e-28 98.8 0.1 2.9e-28 98.5 0.1 1.1 1 0 0 1 1 1 1 RNA binding SMC_N PF02463.19 gi|327310396|ref|YP_004337293.1| - 0.0056 16.1 0.0 0.085 12.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_tran PF00005.27 gi|327310396|ref|YP_004337293.1| - 0.1 13.1 0.1 9.6 6.7 0.0 2.4 2 0 0 2 2 2 0 ABC transporter AAA_22 PF13401.6 gi|327310396|ref|YP_004337293.1| - 0.11 12.7 0.0 14 6.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain ThiP_synth PF10120.9 gi|327310397|ref|YP_004337294.1| - 2e-30 105.6 0.0 3.3e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_23 PF13384.6 gi|327310397|ref|YP_004337294.1| - 0.00077 19.2 0.1 0.016 15.0 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain HTH_37 PF13744.6 gi|327310397|ref|YP_004337294.1| - 0.0013 18.7 0.0 0.0025 17.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|327310397|ref|YP_004337294.1| - 0.0074 16.3 0.1 0.59 10.2 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix MarR_2 PF12802.7 gi|327310397|ref|YP_004337294.1| - 0.021 14.7 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 MarR family Sigma70_r4 PF04545.16 gi|327310397|ref|YP_004337294.1| - 0.099 12.2 0.3 0.32 10.6 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 KORA PF16509.5 gi|327310397|ref|YP_004337294.1| - 0.14 12.4 0.1 2.2 8.6 0.0 2.6 2 1 1 3 3 3 0 TrfB plasmid transcriptional repressor Topo-VIb_trans PF09239.11 gi|327310398|ref|YP_004337295.1| - 8.1e-59 198.0 0.0 1.5e-58 197.1 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|327310398|ref|YP_004337295.1| - 1.9e-12 47.7 0.0 3.4e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|327310398|ref|YP_004337295.1| - 4.6e-09 36.2 0.0 1e-08 35.1 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|327310398|ref|YP_004337295.1| - 2e-05 23.5 0.2 4.7e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|327310398|ref|YP_004337295.1| - 0.095 13.1 0.0 0.28 11.6 0.0 1.8 1 0 0 1 1 1 0 Ribosomal protein S13/S18 Glyco_hydro_70 PF02324.16 gi|327310399|ref|YP_004337296.1| - 0.067 11.4 0.1 0.089 11.0 0.1 1.0 1 0 0 1 1 1 0 Glycosyl hydrolase family 70 HTH_45 PF14947.6 gi|327310401|ref|YP_004337298.1| - 4.3e-12 45.8 0.0 5.2e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|327310401|ref|YP_004337298.1| - 0.00035 20.4 0.0 0.00045 20.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|327310401|ref|YP_004337298.1| - 0.00089 19.1 0.1 0.0015 18.4 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|327310401|ref|YP_004337298.1| - 0.024 14.6 0.1 0.033 14.2 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|327310401|ref|YP_004337298.1| - 0.037 14.0 0.1 0.051 13.5 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MutS_I PF01624.20 gi|327310401|ref|YP_004337298.1| - 0.14 12.4 0.0 0.14 12.4 0.0 1.1 1 0 0 1 1 1 0 MutS domain I TP6A_N PF04406.14 gi|327310402|ref|YP_004337299.1| - 1.1e-20 73.3 0.0 2e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|327310402|ref|YP_004337299.1| - 0.012 15.6 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) PhoU PF01895.19 gi|327310403|ref|YP_004337300.1| - 1.9e-18 66.7 6.0 2.3e-18 66.4 4.3 2.0 2 0 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|327310403|ref|YP_004337300.1| - 2.3e-11 43.3 1.0 4.4e-11 42.4 0.2 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Spc42p PF11544.8 gi|327310403|ref|YP_004337300.1| - 0.0017 18.3 0.0 0.0035 17.3 0.0 1.5 1 0 0 1 1 1 1 Spindle pole body component Spc42p TOBE PF03459.17 gi|327310403|ref|YP_004337300.1| - 0.12 12.7 0.0 0.32 11.3 0.0 1.8 1 0 0 1 1 1 0 TOBE domain Methyltransf_11 PF08241.12 gi|327310404|ref|YP_004337301.1| - 0.00074 20.1 0.0 0.0014 19.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|327310404|ref|YP_004337301.1| - 0.00089 18.7 0.2 0.0012 18.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|327310404|ref|YP_004337301.1| - 0.0011 19.6 0.0 0.002 18.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|327310404|ref|YP_004337301.1| - 0.0083 15.7 0.3 0.058 12.9 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|327310404|ref|YP_004337301.1| - 0.083 12.9 0.0 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|327310404|ref|YP_004337301.1| - 0.1 12.2 0.2 0.32 10.6 0.0 1.7 1 1 1 2 2 2 0 Conserved hypothetical protein 95 RrnaAD PF00398.20 gi|327310404|ref|YP_004337301.1| - 0.11 11.5 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HTH_11 PF08279.12 gi|327310405|ref|YP_004337302.1| - 0.00011 22.0 0.3 0.00028 20.8 0.3 1.8 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|327310405|ref|YP_004337302.1| - 0.00041 20.2 0.2 0.0011 18.8 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|327310405|ref|YP_004337302.1| - 0.0013 18.8 0.1 0.003 17.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|327310405|ref|YP_004337302.1| - 0.0015 18.7 0.1 0.0029 17.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sulfolobus_pRN PF05584.11 gi|327310405|ref|YP_004337302.1| - 0.0026 17.8 1.7 0.074 13.1 0.1 2.4 2 0 0 2 2 2 1 Sulfolobus plasmid regulatory protein HTH_24 PF13412.6 gi|327310405|ref|YP_004337302.1| - 0.0035 16.9 0.4 0.0079 15.7 0.4 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.16 gi|327310405|ref|YP_004337302.1| - 0.0056 16.7 0.1 0.0092 16.0 0.1 1.3 1 0 0 1 1 1 1 HemN C-terminal domain HTH_DeoR PF08220.12 gi|327310405|ref|YP_004337302.1| - 0.011 15.4 0.1 0.021 14.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain AAA_assoc_C PF09821.9 gi|327310405|ref|YP_004337302.1| - 0.029 14.9 0.1 0.046 14.3 0.1 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain HTH_Mga PF08280.11 gi|327310405|ref|YP_004337302.1| - 0.038 14.0 0.1 0.12 12.5 0.1 1.8 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.6 gi|327310405|ref|YP_004337302.1| - 0.053 14.0 0.1 0.12 12.9 0.1 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|327310405|ref|YP_004337302.1| - 0.45 10.4 3.3 0.2 11.6 0.6 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Alba PF01918.21 gi|327310406|ref|YP_004337303.1| - 3.3e-13 49.3 0.4 4.5e-13 48.8 0.4 1.3 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|327310406|ref|YP_004337303.1| - 0.035 14.1 1.9 0.09 12.7 1.9 1.7 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Arcadin_1 PF18653.1 gi|327310407|ref|YP_004337304.1| - 2e-38 130.8 0.9 2.2e-38 130.7 0.9 1.0 1 0 0 1 1 1 1 Arcadin 1 Actin PF00022.19 gi|327310408|ref|YP_004337305.1| - 1.1e-07 30.8 0.1 4e-06 25.7 0.1 2.2 1 1 0 1 1 1 1 Actin CdvA PF18822.1 gi|327310409|ref|YP_004337306.1| - 0.036 13.9 0.2 0.76 9.6 0.0 2.1 2 0 0 2 2 2 0 CdvA-like coiled-coil domain ARGLU PF15346.6 gi|327310409|ref|YP_004337306.1| - 0.11 12.3 2.3 0.077 12.9 0.8 1.4 2 0 0 2 2 2 0 Arginine and glutamate-rich 1 Adipokin_hormo PF06377.11 gi|327310410|ref|YP_004337307.1| - 0.081 13.3 0.3 0.28 11.6 0.0 1.9 1 1 1 2 2 2 0 Adipokinetic hormone GlutR_dimer PF00745.20 gi|327310410|ref|YP_004337307.1| - 0.13 12.8 0.0 0.13 12.8 0.0 1.0 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain SMC_N PF02463.19 gi|327310411|ref|YP_004337308.1| - 5.4e-18 65.2 0.1 7.1e-18 64.9 0.1 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|327310411|ref|YP_004337308.1| - 3.9e-14 53.2 2.6 4.7e-07 29.8 0.1 3.4 2 2 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|327310411|ref|YP_004337308.1| - 2e-07 31.1 20.6 9e-05 22.4 1.5 3.5 3 3 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad50_zn_hook PF04423.14 gi|327310411|ref|YP_004337308.1| - 3e-06 26.9 1.8 0.00056 19.7 0.3 5.0 2 0 0 2 2 2 1 Rad50 zinc hook motif AAA_23 PF13476.6 gi|327310411|ref|YP_004337308.1| - 1.5e-05 25.6 54.6 8.6e+03 -3.0 54.6 4.9 1 1 0 1 1 0 0 AAA domain ABC_tran PF00005.27 gi|327310411|ref|YP_004337308.1| - 6.7e-05 23.4 0.9 0.02 15.4 0.0 4.0 3 2 0 3 3 3 1 ABC transporter AAA_29 PF13555.6 gi|327310411|ref|YP_004337308.1| - 0.00023 20.9 0.0 0.0004 20.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|327310411|ref|YP_004337308.1| - 0.00037 19.3 28.4 0.0069 15.1 7.6 3.4 1 1 1 3 3 3 3 AAA domain GAS PF13851.6 gi|327310411|ref|YP_004337308.1| - 0.00053 19.4 48.1 0.04 13.2 1.0 5.4 3 1 2 5 5 5 3 Growth-arrest specific micro-tubule binding Baculo_PEP_C PF04513.12 gi|327310411|ref|YP_004337308.1| - 0.00071 19.6 8.3 4.5 7.3 0.0 6.3 5 2 0 6 6 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus PspA_IM30 PF04012.12 gi|327310411|ref|YP_004337308.1| - 0.0012 18.5 15.0 0.0012 18.5 15.0 5.0 3 2 2 5 5 5 1 PspA/IM30 family Spc7 PF08317.11 gi|327310411|ref|YP_004337308.1| - 0.0035 16.3 48.1 0.042 12.7 3.9 4.4 2 2 3 5 5 5 4 Spc7 kinetochore protein Dynactin_p22 PF07426.11 gi|327310411|ref|YP_004337308.1| - 0.0081 16.0 25.8 0.29 11.0 1.1 6.2 2 2 2 5 5 5 1 Dynactin subunit p22 APG6_N PF17675.1 gi|327310411|ref|YP_004337308.1| - 0.0088 16.6 65.1 2.1 8.9 8.3 5.7 1 1 3 5 5 5 2 Apg6 coiled-coil region SKA2 PF16740.5 gi|327310411|ref|YP_004337308.1| - 0.014 15.2 1.8 0.014 15.2 1.8 5.1 4 2 0 4 4 4 0 Spindle and kinetochore-associated protein 2 Sec34 PF04136.15 gi|327310411|ref|YP_004337308.1| - 0.022 14.7 18.9 4.4 7.2 0.2 4.9 4 1 0 4 4 4 0 Sec34-like family AAA_27 PF13514.6 gi|327310411|ref|YP_004337308.1| - 0.028 14.0 0.0 0.028 14.0 0.0 4.7 4 1 0 4 4 4 0 AAA domain WXG100 PF06013.12 gi|327310411|ref|YP_004337308.1| - 0.034 14.4 9.2 2.9 8.2 0.0 5.6 4 3 1 5 5 5 0 Proteins of 100 residues with WXG Myb_DNA-bind_3 PF12776.7 gi|327310411|ref|YP_004337308.1| - 0.035 15.1 0.3 8.8 7.4 0.1 4.2 4 0 0 4 4 2 0 Myb/SANT-like DNA-binding domain DUF4763 PF15960.5 gi|327310411|ref|YP_004337308.1| - 0.037 13.3 0.4 0.037 13.3 0.4 5.3 2 2 2 5 5 5 0 Domain of unknown function (DUF4763) MMR_HSR1 PF01926.23 gi|327310411|ref|YP_004337308.1| - 0.098 12.7 0.0 0.48 10.5 0.0 2.3 1 0 0 1 1 1 0 50S ribosome-binding GTPase Retrotrans_gag PF03732.17 gi|327310411|ref|YP_004337308.1| - 0.1 12.9 10.7 6.3 7.1 0.1 4.3 3 1 0 4 4 4 0 Retrotransposon gag protein cobW PF02492.19 gi|327310411|ref|YP_004337308.1| - 0.11 12.1 0.1 0.8 9.3 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CENP-F_leu_zip PF10473.9 gi|327310411|ref|YP_004337308.1| - 0.13 12.3 47.1 0.2 11.7 3.6 5.0 3 1 0 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.9 gi|327310411|ref|YP_004337308.1| - 0.14 12.5 31.2 0.15 12.4 1.1 7.1 4 4 2 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|327310411|ref|YP_004337308.1| - 0.19 11.8 21.4 1.2 9.2 0.5 5.9 3 3 3 6 6 6 0 Protein of unknown function (DUF1664) IFT57 PF10498.9 gi|327310411|ref|YP_004337308.1| - 0.21 10.5 31.9 0.37 9.7 1.0 5.1 3 2 1 5 5 5 0 Intra-flagellar transport protein 57 CENP-K PF11802.8 gi|327310411|ref|YP_004337308.1| - 0.27 10.7 36.8 0.095 12.3 4.1 4.4 2 2 1 4 4 4 0 Centromere-associated protein K FapA PF03961.13 gi|327310411|ref|YP_004337308.1| - 0.29 9.7 39.6 0.027 13.1 1.1 4.6 2 2 1 4 4 4 0 Flagellar Assembly Protein A DUF4407 PF14362.6 gi|327310411|ref|YP_004337308.1| - 0.34 10.2 27.9 25 4.1 20.8 4.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) OmpH PF03938.14 gi|327310411|ref|YP_004337308.1| - 0.36 11.2 39.3 0.17 12.2 6.8 4.9 3 2 1 4 4 4 0 Outer membrane protein (OmpH-like) SesA PF17107.5 gi|327310411|ref|YP_004337308.1| - 0.4 10.9 19.6 0.67 10.2 1.9 4.3 4 1 0 4 4 4 0 N-terminal domain on NACHT_NTPase and P-loop NTPases PE PF00934.20 gi|327310411|ref|YP_004337308.1| - 0.86 10.0 5.0 0.52 10.7 0.4 2.9 3 0 0 3 3 2 0 PE family Allexi_40kDa PF05549.11 gi|327310411|ref|YP_004337308.1| - 1 8.8 7.8 1.2 8.5 0.0 3.9 3 1 2 5 5 5 0 Allexivirus 40kDa protein DUF2730 PF10805.8 gi|327310411|ref|YP_004337308.1| - 1.5 9.0 20.2 1.7 8.7 0.5 5.5 4 4 2 6 6 5 0 Protein of unknown function (DUF2730) FlxA PF14282.6 gi|327310411|ref|YP_004337308.1| - 1.5 8.9 9.6 5.8 7.0 0.1 4.8 5 1 1 6 6 5 0 FlxA-like protein Fib_alpha PF08702.10 gi|327310411|ref|YP_004337308.1| - 1.6 8.9 25.0 3.5 7.8 0.2 6.4 3 2 2 6 6 6 0 Fibrinogen alpha/beta chain family Cob_adeno_trans PF01923.18 gi|327310411|ref|YP_004337308.1| - 1.7 8.8 12.6 1 9.4 1.4 4.1 1 1 2 4 4 4 0 Cobalamin adenosyltransferase FH2 PF02181.23 gi|327310411|ref|YP_004337308.1| - 2.5 7.1 21.8 0.44 9.6 1.9 3.9 3 1 0 3 3 3 0 Formin Homology 2 Domain RmuC PF02646.16 gi|327310411|ref|YP_004337308.1| - 3.5 6.7 23.9 0.19 10.8 0.1 5.4 4 2 2 6 6 6 0 RmuC family Atg14 PF10186.9 gi|327310411|ref|YP_004337308.1| - 3.5 6.6 41.2 0.66 9.0 4.9 4.5 3 1 1 4 4 4 0 Vacuolar sorting 38 and autophagy-related subunit 14 FliD_N PF02465.18 gi|327310411|ref|YP_004337308.1| - 3.8 8.3 15.6 0.82 10.4 0.9 5.1 4 2 1 5 5 4 0 Flagellar hook-associated protein 2 N-terminus V_ATPase_I PF01496.19 gi|327310411|ref|YP_004337308.1| - 4.1 5.2 21.8 0.79 7.6 6.3 3.8 1 1 3 4 4 4 0 V-type ATPase 116kDa subunit family AAA_22 PF13401.6 gi|327310411|ref|YP_004337308.1| - 4.4 7.6 7.2 2.8 8.2 0.1 3.7 3 1 1 4 4 4 0 AAA domain STAT_alpha PF01017.20 gi|327310411|ref|YP_004337308.1| - 4.5 7.1 20.9 4.1 7.3 0.3 4.8 3 1 2 5 5 5 0 STAT protein, all-alpha domain Exonuc_VII_L PF02601.15 gi|327310411|ref|YP_004337308.1| - 5.6 6.4 34.3 1.7 8.2 4.2 4.1 1 1 2 3 3 3 0 Exonuclease VII, large subunit DUF3053 PF11254.8 gi|327310411|ref|YP_004337308.1| - 7.2 6.1 11.5 4.8 6.7 0.5 3.8 2 2 1 4 4 4 0 Protein of unknown function (DUF3053) Laminin_II PF06009.12 gi|327310411|ref|YP_004337308.1| - 7.4 6.6 21.4 5.3 7.1 0.9 5.3 3 2 2 5 5 5 0 Laminin Domain II T4_Rnl2_C PF18043.1 gi|327310411|ref|YP_004337308.1| - 8.5 6.6 11.2 5.6 7.2 0.6 4.1 3 0 0 3 3 3 0 T4 RNA ligase 2 C-terminal Occludin_ELL PF07303.13 gi|327310411|ref|YP_004337308.1| - 8.9 7.1 35.9 0.46 11.2 1.7 6.3 2 2 4 6 6 6 0 Occludin homology domain CENP-H PF05837.12 gi|327310411|ref|YP_004337308.1| - 9.1 6.7 37.9 1.1 9.7 5.3 5.2 4 1 2 6 6 5 0 Centromere protein H (CENP-H) TrmB PF01978.19 gi|327310413|ref|YP_004337310.1| - 2.6e-22 78.5 1.6 2.4e-21 75.4 0.0 2.7 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|327310413|ref|YP_004337310.1| - 8.9e-08 31.6 0.0 1.8e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|327310413|ref|YP_004337310.1| - 1.5e-07 31.4 0.2 7.1e-07 29.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|327310413|ref|YP_004337310.1| - 2.1e-06 27.5 0.0 4.9e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|327310413|ref|YP_004337310.1| - 3e-05 23.7 0.1 0.00017 21.3 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|327310413|ref|YP_004337310.1| - 4.4e-05 23.7 0.0 9.9e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|327310413|ref|YP_004337310.1| - 0.00024 20.8 0.0 0.00061 19.5 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.7 gi|327310413|ref|YP_004337310.1| - 0.00028 20.7 0.1 0.001 18.9 0.1 2.0 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|327310413|ref|YP_004337310.1| - 0.00033 20.4 0.0 0.00073 19.3 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|327310413|ref|YP_004337310.1| - 0.0005 20.0 0.1 0.0025 17.7 0.0 2.2 3 0 0 3 3 3 1 HTH domain DUF2250 PF10007.9 gi|327310413|ref|YP_004337310.1| - 0.00065 19.8 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|327310413|ref|YP_004337310.1| - 0.001 18.9 0.0 0.0032 17.4 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_9 PF08221.11 gi|327310413|ref|YP_004337310.1| - 0.003 17.6 0.0 0.0091 16.1 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|327310413|ref|YP_004337310.1| - 0.0031 17.6 0.0 0.0067 16.6 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase GntR PF00392.21 gi|327310413|ref|YP_004337310.1| - 0.01 15.5 0.1 0.2 11.3 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|327310413|ref|YP_004337310.1| - 0.012 16.1 0.0 0.11 13.1 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|327310413|ref|YP_004337310.1| - 0.015 15.4 0.0 0.041 14.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|327310413|ref|YP_004337310.1| - 0.028 14.8 0.0 0.06 13.7 0.0 1.7 1 1 0 1 1 1 0 Penicillinase repressor HTH_34 PF13601.6 gi|327310413|ref|YP_004337310.1| - 0.033 14.4 0.0 0.091 13.0 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Dimerisation2 PF16864.5 gi|327310413|ref|YP_004337310.1| - 0.036 14.0 0.0 0.098 12.7 0.0 1.7 1 1 0 1 1 1 0 Dimerisation domain HTH_29 PF13551.6 gi|327310413|ref|YP_004337310.1| - 0.044 13.8 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix FaeA PF04703.12 gi|327310413|ref|YP_004337310.1| - 0.053 13.9 0.0 0.1 13.0 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Regulator_TrmB PF11495.8 gi|327310413|ref|YP_004337310.1| - 0.073 12.3 0.5 0.43 9.7 0.5 2.0 1 1 0 1 1 1 0 Archaeal transcriptional regulator TrmB Radical_SAM PF04055.21 gi|327310414|ref|YP_004337311.1| - 4.4e-25 89.0 0.2 2.5e-24 86.5 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|327310414|ref|YP_004337311.1| - 1.2e-05 25.4 0.1 9.7e-05 22.5 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|327310414|ref|YP_004337311.1| - 4.4e-05 23.8 0.0 0.0001 22.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ComA PF02679.15 gi|327310414|ref|YP_004337311.1| - 0.11 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) AP_endonuc_2 PF01261.24 gi|327310414|ref|YP_004337311.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel zf-Di19 PF05605.12 gi|327310414|ref|YP_004337311.1| - 1 9.7 4.8 4.7 7.6 0.1 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Pribosyltran PF00156.27 gi|327310415|ref|YP_004337312.1| - 4.6e-17 62.0 0.0 6.1e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|327310415|ref|YP_004337312.1| - 0.00014 21.4 0.0 0.00017 21.1 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|327310415|ref|YP_004337312.1| - 0.012 15.1 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 Phosphoribosyl transferase Pribosyl_synth PF14572.6 gi|327310415|ref|YP_004337312.1| - 0.024 14.7 0.2 0.037 14.1 0.2 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain DHO_dh PF01180.21 gi|327310416|ref|YP_004337313.1| - 2.3e-29 102.5 0.0 3.6e-28 98.6 0.0 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|327310416|ref|YP_004337313.1| - 0.0015 17.9 0.1 0.0025 17.3 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase PIN PF01850.21 gi|327310417|ref|YP_004337314.1| - 2.2e-09 37.9 0.3 2.7e-09 37.6 0.3 1.1 1 0 0 1 1 1 1 PIN domain DUF4177 PF13783.6 gi|327310417|ref|YP_004337314.1| - 0.13 12.6 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4177) Lactate_perm PF02652.14 gi|327310419|ref|YP_004337316.1| - 1.1e-98 331.2 46.2 1.9e-98 330.5 46.2 1.3 1 1 0 1 1 1 1 L-lactate permease Malate_synthase PF01274.22 gi|327310420|ref|YP_004337317.1| - 6.6e-41 140.2 0.0 9.5e-36 123.1 0.0 2.2 2 0 0 2 2 2 2 Malate synthase HpcH_HpaI PF03328.14 gi|327310420|ref|YP_004337317.1| - 0.014 14.5 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family HAD PF12710.7 gi|327310420|ref|YP_004337317.1| - 0.062 13.7 0.4 0.18 12.2 0.1 2.0 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase FAD-oxidase_C PF02913.19 gi|327310421|ref|YP_004337318.1| - 1.1e-44 153.0 0.0 2e-44 152.1 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|327310421|ref|YP_004337318.1| - 3.9e-33 114.1 0.5 1.4e-32 112.3 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain Fer4_8 PF13183.6 gi|327310422|ref|YP_004337319.1| - 2.3e-13 50.4 3.3 2.9e-13 50.0 3.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310422|ref|YP_004337319.1| - 2e-08 34.7 4.9 2.7e-08 34.2 4.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327310422|ref|YP_004337319.1| - 5.6e-08 33.3 5.1 8.9e-08 32.6 5.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310422|ref|YP_004337319.1| - 2.1e-06 27.8 9.6 0.0026 17.9 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|327310422|ref|YP_004337319.1| - 1.1e-05 25.5 2.4 0.082 13.0 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|327310422|ref|YP_004337319.1| - 1.5e-05 24.6 12.6 0.00023 20.9 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|327310422|ref|YP_004337319.1| - 5.8e-05 22.8 4.6 0.017 14.9 0.3 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.6 gi|327310422|ref|YP_004337319.1| - 0.0002 21.5 9.7 0.0073 16.4 10.8 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|327310422|ref|YP_004337319.1| - 0.0009 19.4 0.9 0.64 10.2 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327310422|ref|YP_004337319.1| - 0.0017 18.4 11.5 0.017 15.2 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327310422|ref|YP_004337319.1| - 0.0041 18.0 9.9 0.046 14.7 10.2 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|327310422|ref|YP_004337319.1| - 0.0045 17.0 11.6 0.18 11.9 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|327310422|ref|YP_004337319.1| - 0.035 14.9 10.7 0.35 11.8 1.4 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327310422|ref|YP_004337319.1| - 0.094 13.3 11.4 2 9.1 1.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|327310422|ref|YP_004337319.1| - 6.1 8.0 14.3 6.9 7.9 3.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|327310423|ref|YP_004337320.1| - 3e-11 43.4 0.0 1.6e-07 31.5 0.1 2.6 3 0 0 3 3 3 2 Cysteine-rich domain DNA_pol_B_3 PF08408.10 gi|327310423|ref|YP_004337320.1| - 0.049 13.8 0.6 0.38 11.0 0.3 2.1 1 1 1 2 2 2 0 DNA polymerase family B viral insert Sod_Fe_C PF02777.18 gi|327310424|ref|YP_004337321.1| - 9.2e-32 109.3 0.6 1.3e-31 108.8 0.6 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|327310424|ref|YP_004337321.1| - 2.7e-28 98.2 1.1 3.9e-28 97.8 0.1 1.8 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain 5-FTHF_cyc-lig PF01812.20 gi|327310425|ref|YP_004337322.1| - 2.2e-33 115.7 0.0 2.7e-33 115.4 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family TrmB PF01978.19 gi|327310426|ref|YP_004337323.1| - 6.5e-06 25.9 0.3 1.1e-05 25.2 0.3 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|327310426|ref|YP_004337323.1| - 0.00011 22.6 0.1 0.00018 21.8 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor TFIIE_alpha PF02002.17 gi|327310426|ref|YP_004337323.1| - 0.0009 19.1 0.1 0.0019 18.1 0.1 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_IclR PF09339.10 gi|327310426|ref|YP_004337323.1| - 0.007 16.1 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|327310426|ref|YP_004337323.1| - 0.021 14.7 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_DeoR PF08220.12 gi|327310426|ref|YP_004337323.1| - 0.035 13.8 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PheRS_DBD1 PF18552.1 gi|327310426|ref|YP_004337323.1| - 0.075 12.8 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 PheRS DNA binding domain 1 MarR PF01047.22 gi|327310426|ref|YP_004337323.1| - 0.088 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|327310426|ref|YP_004337323.1| - 0.094 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sulfolobus_pRN PF05584.11 gi|327310426|ref|YP_004337323.1| - 0.1 12.7 1.1 0.14 12.2 0.1 1.8 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein DUF977 PF06163.11 gi|327310426|ref|YP_004337323.1| - 0.17 11.9 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) BPD_transp_1 PF00528.22 gi|327310427|ref|YP_004337324.1| - 2.1e-10 40.6 11.6 2.1e-10 40.6 11.6 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PEP-CTERM PF07589.11 gi|327310427|ref|YP_004337324.1| - 0.0082 16.2 1.1 0.049 13.7 0.2 3.0 2 0 0 2 2 2 1 PEP-CTERM motif TrmO PF01980.16 gi|327310428|ref|YP_004337325.1| - 3.1e-28 98.4 0.0 3.7e-28 98.1 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O SBP_bac_11 PF13531.6 gi|327310429|ref|YP_004337326.1| - 1e-24 87.6 0.1 1.3e-24 87.2 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|327310429|ref|YP_004337326.1| - 0.00016 21.7 0.2 0.00039 20.5 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|327310429|ref|YP_004337326.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|327310430|ref|YP_004337327.1| - 1.5e-21 77.3 0.0 2e-21 77.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310430|ref|YP_004337327.1| - 1.7e-10 41.2 0.0 4e-05 23.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|327310430|ref|YP_004337327.1| - 3.4e-06 27.7 0.1 4.7e-06 27.3 0.1 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|327310430|ref|YP_004337327.1| - 2.7e-05 23.7 0.1 0.027 13.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|327310430|ref|YP_004337327.1| - 7.4e-05 22.6 0.0 0.02 14.6 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|327310430|ref|YP_004337327.1| - 0.0018 18.7 0.1 0.0034 17.8 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|327310430|ref|YP_004337327.1| - 0.0025 17.5 0.0 0.0052 16.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|327310430|ref|YP_004337327.1| - 0.0071 15.0 0.0 0.0085 14.8 0.0 1.0 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327310430|ref|YP_004337327.1| - 0.015 15.6 0.2 0.057 13.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|327310430|ref|YP_004337327.1| - 0.023 14.4 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|327310430|ref|YP_004337327.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|327310430|ref|YP_004337327.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|327310430|ref|YP_004337327.1| - 0.16 11.6 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|327310430|ref|YP_004337327.1| - 0.16 12.1 0.0 0.24 11.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|327310430|ref|YP_004337327.1| - 0.18 11.7 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|327310430|ref|YP_004337327.1| - 0.2 11.5 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Adeno_IVa2 PF02456.15 gi|327310430|ref|YP_004337327.1| - 0.27 10.0 0.1 0.37 9.5 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein Epimerase PF01370.21 gi|327310431|ref|YP_004337328.1| - 1.4e-17 63.9 0.0 2.2e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|327310431|ref|YP_004337328.1| - 3e-13 49.5 0.0 4.3e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|327310431|ref|YP_004337328.1| - 4.8e-05 22.5 0.0 0.006 15.6 0.0 2.7 2 1 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|327310431|ref|YP_004337328.1| - 9.9e-05 22.3 0.0 0.00015 21.7 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|327310431|ref|YP_004337328.1| - 0.00074 19.0 0.7 0.091 12.1 0.6 2.9 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase Glyco_transf_4 PF13439.6 gi|327310431|ref|YP_004337328.1| - 0.31 11.0 2.6 0.46 10.5 1.0 2.1 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Couple_hipA PF13657.6 gi|327310432|ref|YP_004337329.1| - 0.068 13.8 0.0 0.1 13.2 0.0 1.3 1 0 0 1 1 1 0 HipA N-terminal domain HTH_48 PF17906.1 gi|327310432|ref|YP_004337329.1| - 0.22 11.7 0.0 0.65 10.2 0.0 1.7 2 0 0 2 2 2 0 HTH domain in Mos1 transposase Radical_SAM PF04055.21 gi|327310433|ref|YP_004337330.1| - 2.7e-25 89.7 0.0 8.1e-25 88.1 0.0 1.8 2 1 1 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|327310433|ref|YP_004337330.1| - 9.4e-12 45.0 0.1 2.4e-11 43.7 0.1 1.7 1 0 0 1 1 1 1 B12 binding domain PPDK_N PF01326.19 gi|327310435|ref|YP_004337332.1| - 2.1e-109 365.8 0.0 3.7e-109 365.0 0.0 1.4 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|327310435|ref|YP_004337332.1| - 3.9e-77 259.3 0.0 6e-77 258.6 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|327310435|ref|YP_004337332.1| - 4.5e-28 96.8 0.2 1.1e-27 95.6 0.2 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Peptidase_M22 PF00814.25 gi|327310436|ref|YP_004337333.1| - 6e-77 259.0 0.4 7.1e-77 258.7 0.4 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.19 gi|327310437|ref|YP_004337334.1| - 4.5e-13 49.1 1.1 5.6e-13 48.8 1.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.11 gi|327310437|ref|YP_004337334.1| - 0.00082 19.3 0.2 0.0009 19.1 0.2 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|327310437|ref|YP_004337334.1| - 0.0013 18.7 1.6 0.0013 18.7 1.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain GFA PF04828.14 gi|327310437|ref|YP_004337334.1| - 0.0032 17.8 0.7 0.59 10.5 0.0 2.0 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|327310437|ref|YP_004337334.1| - 0.0077 15.8 1.0 0.88 9.2 0.1 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|327310437|ref|YP_004337334.1| - 0.019 14.6 3.4 0.27 10.9 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|327310437|ref|YP_004337334.1| - 0.026 14.9 1.3 0.04 14.3 1.3 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar PriA_CRR PF18319.1 gi|327310437|ref|YP_004337334.1| - 0.042 13.8 0.2 0.042 13.8 0.2 2.1 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain zf-ribbon_3 PF13248.6 gi|327310437|ref|YP_004337334.1| - 0.044 13.2 2.2 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|327310437|ref|YP_004337334.1| - 0.056 13.3 2.8 2.4 8.1 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|327310437|ref|YP_004337334.1| - 0.059 12.9 1.0 0.64 9.6 0.0 2.4 3 0 0 3 3 3 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|327310437|ref|YP_004337334.1| - 0.064 13.2 4.5 0.44 10.5 4.1 2.1 1 1 1 2 2 2 0 Nudix N-terminal YhfH PF14149.6 gi|327310437|ref|YP_004337334.1| - 0.065 13.2 1.7 5.5 7.0 0.1 2.3 1 1 1 2 2 2 0 YhfH-like protein ADK_lid PF05191.14 gi|327310437|ref|YP_004337334.1| - 0.077 13.0 6.4 0.78 9.8 6.4 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF1936 PF09151.10 gi|327310437|ref|YP_004337334.1| - 0.08 12.9 3.8 6.2 6.8 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) zf-ISL3 PF14690.6 gi|327310437|ref|YP_004337334.1| - 0.094 13.4 6.3 0.18 12.5 0.5 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.10 gi|327310437|ref|YP_004337334.1| - 0.13 12.4 1.0 0.2 11.9 1.0 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_2 PF13240.6 gi|327310437|ref|YP_004337334.1| - 0.16 11.7 2.8 2.7 7.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_recom PF13408.6 gi|327310437|ref|YP_004337334.1| - 0.37 11.3 4.6 0.9 10.1 4.6 1.7 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain HalOD2 PF18547.1 gi|327310437|ref|YP_004337334.1| - 0.45 10.5 3.8 1.6 8.7 0.7 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 zf-C2H2_3 PF13878.6 gi|327310437|ref|YP_004337334.1| - 1.8 8.4 4.4 12 5.9 1.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Ribosomal_S24e PF01282.19 gi|327310438|ref|YP_004337335.1| - 5.6e-23 80.7 1.1 1.2e-22 79.6 0.0 1.9 1 1 1 2 2 2 1 Ribosomal protein S24e DUF4148 PF13663.6 gi|327310438|ref|YP_004337335.1| - 0.25 11.5 1.3 5.3 7.3 1.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4148) PsiE PF06146.12 gi|327310439|ref|YP_004337336.1| - 1.2e-12 48.1 6.9 1.2e-12 48.1 6.9 2.5 3 1 0 3 3 3 1 Phosphate-starvation-inducible E Cas_St_Csn2 PF16813.5 gi|327310439|ref|YP_004337336.1| - 0.091 11.9 3.6 0.24 10.5 1.5 1.9 1 1 1 2 2 2 0 CRISPR-associated protein Csn2 subfamily St Ac76 PF05814.11 gi|327310439|ref|YP_004337336.1| - 9.8 6.3 10.6 1.8 8.6 6.3 2.0 1 1 1 2 2 2 0 Orf76 (Ac76) Methyltransf_11 PF08241.12 gi|327310440|ref|YP_004337337.1| - 7.8e-10 39.3 0.0 1.2e-09 38.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310440|ref|YP_004337337.1| - 1.6e-05 25.5 0.0 3.1e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327310440|ref|YP_004337337.1| - 0.087 13.6 0.0 0.16 12.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|327310440|ref|YP_004337337.1| - 0.18 11.1 0.0 0.28 10.5 0.0 1.5 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family CPBP PF02517.16 gi|327310441|ref|YP_004337338.1| - 1e-12 48.3 2.1 1e-12 48.3 2.1 2.0 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease PsbH PF00737.20 gi|327310441|ref|YP_004337338.1| - 0.055 13.2 0.4 0.15 11.9 0.4 1.7 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein Fe_dep_repress PF01325.19 gi|327310442|ref|YP_004337339.1| - 1.9e-16 60.0 0.4 5.6e-16 58.5 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|327310442|ref|YP_004337339.1| - 3e-13 49.6 1.2 5.4e-12 45.6 1.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|327310442|ref|YP_004337339.1| - 1.6e-08 34.3 0.3 4.4e-08 32.9 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|327310442|ref|YP_004337339.1| - 1.9e-06 27.6 4.9 1.3e-05 24.9 0.1 2.7 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|327310442|ref|YP_004337339.1| - 1.1e-05 25.3 0.1 2.6e-05 24.1 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|327310442|ref|YP_004337339.1| - 1.5e-05 24.5 0.1 3e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|327310442|ref|YP_004337339.1| - 6.3e-05 22.8 0.1 0.00017 21.5 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.6 gi|327310442|ref|YP_004337339.1| - 0.00024 21.5 0.4 0.00061 20.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF977 PF06163.11 gi|327310442|ref|YP_004337339.1| - 0.00046 20.1 0.0 0.00057 19.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) TrmB PF01978.19 gi|327310442|ref|YP_004337339.1| - 0.00053 19.8 0.1 0.0011 18.7 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|327310442|ref|YP_004337339.1| - 0.0015 18.3 0.1 0.0054 16.5 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain Rrf2 PF02082.20 gi|327310442|ref|YP_004337339.1| - 0.0023 18.3 0.0 0.005 17.2 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|327310442|ref|YP_004337339.1| - 0.0028 17.3 1.5 0.0055 16.3 0.1 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 gi|327310442|ref|YP_004337339.1| - 0.0032 17.3 1.0 0.011 15.5 0.3 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|327310442|ref|YP_004337339.1| - 0.0038 17.0 0.2 0.0087 15.9 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|327310442|ref|YP_004337339.1| - 0.0066 16.5 0.8 0.019 15.0 0.1 2.0 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|327310442|ref|YP_004337339.1| - 0.0099 15.8 0.1 0.023 14.6 0.1 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_28 PF13518.6 gi|327310442|ref|YP_004337339.1| - 0.021 14.9 0.1 0.047 13.8 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|327310442|ref|YP_004337339.1| - 0.022 14.6 0.2 0.09 12.6 0.0 1.8 2 0 0 2 2 2 0 TFIIE alpha subunit HTH_29 PF13551.6 gi|327310442|ref|YP_004337339.1| - 0.025 14.6 0.1 0.094 12.7 0.0 2.0 3 0 0 3 3 3 0 Winged helix-turn helix HTH_45 PF14947.6 gi|327310442|ref|YP_004337339.1| - 0.026 14.5 0.0 0.061 13.3 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix DUF4423 PF14394.6 gi|327310442|ref|YP_004337339.1| - 0.049 13.3 0.0 0.094 12.4 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_36 PF13730.6 gi|327310442|ref|YP_004337339.1| - 0.059 13.3 0.0 0.14 12.2 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|327310442|ref|YP_004337339.1| - 0.073 12.7 0.4 0.37 10.4 0.0 1.9 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_23 PF13384.6 gi|327310442|ref|YP_004337339.1| - 0.081 12.7 0.3 0.2 11.5 0.1 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.12 gi|327310442|ref|YP_004337339.1| - 0.099 12.6 0.5 0.21 11.5 0.1 1.8 2 0 0 2 2 1 0 HTH domain RuvB_C PF05491.13 gi|327310442|ref|YP_004337339.1| - 0.12 12.3 0.6 0.38 10.6 0.1 2.0 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain Mrr_N PF14338.6 gi|327310442|ref|YP_004337339.1| - 0.13 12.5 0.3 0.45 10.7 0.1 2.1 2 1 0 2 2 2 0 Mrr N-terminal domain Nramp PF01566.18 gi|327310443|ref|YP_004337340.1| - 4.2e-66 223.4 25.9 5.5e-66 223.0 25.9 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein ATP-grasp_2 PF08442.10 gi|327310444|ref|YP_004337341.1| - 4.2e-63 212.6 0.8 4.2e-63 212.6 0.8 1.6 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|327310444|ref|YP_004337341.1| - 1.4e-15 57.5 0.3 3.2e-15 56.3 0.3 1.6 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|327310444|ref|YP_004337341.1| - 4.4e-13 49.2 4.6 4.4e-12 45.9 0.5 2.5 3 0 0 3 3 3 2 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|327310444|ref|YP_004337341.1| - 5.1e-08 32.7 0.4 1.2e-07 31.5 0.4 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|327310444|ref|YP_004337341.1| - 0.00013 21.8 0.3 0.00025 20.9 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|327310444|ref|YP_004337341.1| - 0.002 17.7 0.1 0.0036 16.9 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|327310444|ref|YP_004337341.1| - 0.0038 16.8 0.0 0.0072 15.9 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain DUF2555 PF10742.9 gi|327310444|ref|YP_004337341.1| - 0.16 11.8 0.0 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2555) CoA_binding PF02629.19 gi|327310445|ref|YP_004337342.1| - 5.1e-22 78.4 2.6 5.1e-22 78.4 2.6 2.4 2 1 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|327310445|ref|YP_004337342.1| - 4.4e-11 42.7 0.1 1.1e-10 41.5 0.0 1.6 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain Ligase_CoA PF00549.19 gi|327310445|ref|YP_004337342.1| - 1.2e-10 41.5 0.2 2.1e-10 40.6 0.2 1.4 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|327310445|ref|YP_004337342.1| - 1.2e-07 32.2 0.6 4.2e-07 30.4 0.1 2.0 3 0 0 3 3 3 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|327310445|ref|YP_004337342.1| - 0.099 13.5 0.1 2 9.2 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Radical_SAM PF04055.21 gi|327310445|ref|YP_004337342.1| - 0.21 12.0 0.0 0.85 10.0 0.0 2.0 2 0 0 2 2 2 0 Radical SAM superfamily SHOCT PF09851.9 gi|327310445|ref|YP_004337342.1| - 0.44 10.3 2.1 0.44 10.3 0.7 1.8 2 0 0 2 2 2 0 Short C-terminal domain Aminotran_1_2 PF00155.21 gi|327310446|ref|YP_004337343.1| - 7e-41 140.6 0.0 8.3e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|327310446|ref|YP_004337343.1| - 8.7e-13 47.8 0.0 8.9e-12 44.5 0.0 1.9 1 1 1 2 2 2 1 Alanine-glyoxylate amino-transferase PALP PF00291.25 gi|327310447|ref|YP_004337344.1| - 4.6e-88 295.4 4.7 6.1e-88 295.0 4.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|327310447|ref|YP_004337344.1| - 1.8e-12 46.8 0.1 6.4e-12 45.0 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|327310447|ref|YP_004337344.1| - 0.00027 20.7 0.3 0.097 12.5 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.6 gi|327310447|ref|YP_004337344.1| - 0.00031 20.6 0.0 0.00099 19.1 0.0 1.8 1 1 0 1 1 1 1 ACT domain FtsA PF14450.6 gi|327310447|ref|YP_004337344.1| - 0.078 13.4 0.1 0.19 12.2 0.1 1.7 1 1 0 1 1 1 0 Cell division protein FtsA Lactamase_B_3 PF13483.6 gi|327310447|ref|YP_004337344.1| - 0.14 12.0 0.0 0.42 10.5 0.0 1.7 1 0 0 1 1 1 0 Beta-lactamase superfamily domain LpxI_N PF17930.1 gi|327310447|ref|YP_004337344.1| - 0.96 9.4 3.7 9.2 6.2 0.2 3.7 4 1 0 4 4 4 0 LpxI N-terminal domain tRNA_SAD PF07973.14 gi|327310448|ref|YP_004337345.1| - 1.4e-11 44.3 0.1 2.6e-11 43.4 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|327310448|ref|YP_004337345.1| - 1.9e-10 39.9 0.2 2.7e-10 39.4 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DAO PF01266.24 gi|327310449|ref|YP_004337346.1| - 4.8e-49 167.8 1.2 5.6e-49 167.6 1.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|327310449|ref|YP_004337346.1| - 2e-05 24.0 0.2 0.0076 15.5 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327310449|ref|YP_004337346.1| - 0.00011 22.7 0.2 0.00047 20.7 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327310449|ref|YP_004337346.1| - 0.00012 22.2 0.5 0.00026 21.1 0.5 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|327310449|ref|YP_004337346.1| - 0.0083 16.1 0.6 0.53 10.3 0.1 2.6 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.17 gi|327310449|ref|YP_004337346.1| - 0.034 13.4 0.1 0.079 12.2 0.1 1.6 1 0 0 1 1 1 0 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|327310449|ref|YP_004337346.1| - 0.036 13.6 0.7 0.054 13.1 0.7 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_2 PF00890.24 gi|327310449|ref|YP_004337346.1| - 0.039 13.0 0.3 0.54 9.3 0.2 2.2 2 1 0 2 2 2 0 FAD binding domain Ldh_1_N PF00056.23 gi|327310449|ref|YP_004337346.1| - 0.048 13.8 0.4 0.094 12.8 0.4 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Mqo PF06039.15 gi|327310449|ref|YP_004337346.1| - 0.092 11.3 0.2 0.12 10.9 0.2 1.1 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) Pyr_redox_3 PF13738.6 gi|327310449|ref|YP_004337346.1| - 0.14 11.4 0.3 4.7 6.4 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|327310449|ref|YP_004337346.1| - 0.21 10.4 0.2 0.28 10.0 0.2 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FUR PF01475.19 gi|327310450|ref|YP_004337347.1| - 5.8e-22 78.1 0.1 7.2e-22 77.8 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family TrmB PF01978.19 gi|327310450|ref|YP_004337347.1| - 0.00041 20.2 0.4 0.01 15.7 0.0 2.7 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|327310450|ref|YP_004337347.1| - 0.00066 19.6 0.1 0.0035 17.3 0.0 2.2 3 0 0 3 3 3 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|327310450|ref|YP_004337347.1| - 0.0014 19.0 0.0 0.0027 18.1 0.0 1.5 1 1 0 1 1 1 1 Penicillinase repressor HxlR PF01638.17 gi|327310450|ref|YP_004337347.1| - 0.0039 17.0 0.0 0.01 15.7 0.0 1.8 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|327310450|ref|YP_004337347.1| - 0.0055 16.2 0.6 0.37 10.4 0.0 3.0 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|327310450|ref|YP_004337347.1| - 0.0073 16.1 0.0 0.028 14.2 0.0 2.0 2 1 1 3 3 3 1 LexA DNA binding domain DUF2513 PF10711.9 gi|327310450|ref|YP_004337347.1| - 0.017 15.4 0.1 0.026 14.8 0.1 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.20 gi|327310450|ref|YP_004337347.1| - 0.041 14.2 0.0 16 6.0 0.0 2.4 2 1 0 2 2 2 0 Transcriptional regulator HTH_11 PF08279.12 gi|327310450|ref|YP_004337347.1| - 0.086 12.8 0.0 0.92 9.5 0.0 2.5 3 0 0 3 3 3 0 HTH domain HTH_23 PF13384.6 gi|327310450|ref|YP_004337347.1| - 0.13 12.1 0.0 1.7 8.5 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain HTH_5 PF01022.20 gi|327310450|ref|YP_004337347.1| - 0.13 12.1 1.4 1.7 8.6 0.2 3.1 3 1 0 3 3 3 0 Bacterial regulatory protein, arsR family DsrC PF04358.13 gi|327310450|ref|YP_004337347.1| - 0.15 12.5 0.1 0.7 10.4 0.1 1.8 1 1 1 2 2 2 0 DsrC like protein Adenosine_kin PF04008.14 gi|327310451|ref|YP_004337348.1| - 1.3e-75 252.4 0.1 1.4e-75 252.3 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DEAD PF00270.29 gi|327310452|ref|YP_004337349.1| - 3.3e-25 88.8 0.0 2e-24 86.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|327310452|ref|YP_004337349.1| - 3.2e-16 59.7 0.0 1.2e-14 54.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|327310452|ref|YP_004337349.1| - 6.3e-13 49.3 0.1 1.7e-12 47.9 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) tRNA-synt_1 PF00133.22 gi|327310453|ref|YP_004337350.1| - 3.6e-101 339.3 0.0 1.3e-99 334.2 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|327310453|ref|YP_004337350.1| - 4.4e-29 101.4 0.0 7.5e-29 100.7 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|327310453|ref|YP_004337350.1| - 1.1e-24 86.9 0.0 1.1e-15 57.4 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) HscB_4_cys PF18256.1 gi|327310453|ref|YP_004337350.1| - 0.0007 19.3 0.6 0.11 12.3 0.0 2.5 2 0 0 2 2 2 2 Co-chaperone HscB tetracysteine metal binding motif tRNA-synt_1_2 PF13603.6 gi|327310453|ref|YP_004337350.1| - 0.0014 18.2 0.0 0.026 14.1 0.0 2.2 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|327310453|ref|YP_004337350.1| - 0.12 11.3 0.0 2.8 6.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) ACT PF01842.25 gi|327310454|ref|YP_004337351.1| - 3.7e-08 33.0 0.1 7.7e-08 32.0 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|327310454|ref|YP_004337351.1| - 8.1e-06 26.3 0.0 1.9e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|327310454|ref|YP_004337351.1| - 0.0024 17.8 0.0 0.0049 16.8 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|327310454|ref|YP_004337351.1| - 0.0029 17.3 0.0 0.0059 16.4 0.0 1.5 1 0 0 1 1 1 1 ACT domain RPA PF10134.9 gi|327310454|ref|YP_004337351.1| - 0.09 12.3 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Replication initiator protein A ATP_bind_3 PF01171.20 gi|327310455|ref|YP_004337352.1| - 1.8e-11 44.1 0.0 3.1e-11 43.4 0.0 1.3 1 1 0 1 1 1 1 PP-loop family zn-ribbon_14 PF16503.5 gi|327310455|ref|YP_004337352.1| - 6.6e-06 25.5 1.6 6.6e-06 25.5 1.6 2.4 3 0 0 3 3 3 1 Zinc-ribbon PAPS_reduct PF01507.19 gi|327310455|ref|YP_004337352.1| - 3.2e-05 24.0 0.0 0.00047 20.3 0.0 2.2 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|327310455|ref|YP_004337352.1| - 0.046 13.3 0.6 0.17 11.5 0.2 2.2 2 0 0 2 2 2 0 RecR protein tRNA_Me_trans PF03054.16 gi|327310455|ref|YP_004337352.1| - 0.11 11.2 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DZR PF12773.7 gi|327310455|ref|YP_004337352.1| - 0.93 9.6 8.3 6 7.0 1.6 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|327310455|ref|YP_004337352.1| - 2.2 7.8 8.2 5.1 6.7 1.8 3.0 3 0 0 3 3 3 0 zinc-ribbon domain GATA PF00320.27 gi|327310455|ref|YP_004337352.1| - 4.5 7.0 8.8 2.7 7.7 2.2 2.7 2 1 1 3 3 3 0 GATA zinc finger DUF35_N PF12172.8 gi|327310456|ref|YP_004337353.1| - 0.00071 19.4 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|327310456|ref|YP_004337353.1| - 0.006 16.5 0.4 0.016 15.1 0.4 1.7 1 1 0 1 1 1 1 zinc-ribbon domain Thy1 PF02511.15 gi|327310457|ref|YP_004337354.1| - 1.1e-40 139.4 0.2 1.3e-40 139.2 0.2 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein FixO PF02433.15 gi|327310457|ref|YP_004337354.1| - 0.098 12.1 0.1 0.15 11.5 0.1 1.2 1 0 0 1 1 1 0 Cytochrome C oxidase, mono-heme subunit/FixO Ribosomal_L15e PF00827.17 gi|327310459|ref|YP_004337356.1| - 1.9e-58 197.3 8.9 2.3e-58 197.1 8.9 1.1 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|327310460|ref|YP_004337357.1| - 3e-20 72.6 0.0 5.1e-19 68.7 0.0 1.9 1 1 0 1 1 1 1 RNA binding PriA_C PF18074.1 gi|327310460|ref|YP_004337357.1| - 0.15 12.8 0.0 0.2 12.5 0.0 1.2 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain RNase_P_p30 PF01876.16 gi|327310461|ref|YP_004337358.1| - 0.099 12.1 0.0 0.24 10.8 0.0 1.5 1 1 0 1 1 1 0 RNase P subunit p30 RimK PF08443.11 gi|327310463|ref|YP_004337360.1| - 7.7e-30 103.9 0.0 9.8e-30 103.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|327310463|ref|YP_004337360.1| - 2.5e-16 59.6 0.0 3.5e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|327310463|ref|YP_004337360.1| - 1.6e-11 44.5 0.0 3e-11 43.6 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|327310463|ref|YP_004337360.1| - 7.9e-06 25.3 0.0 0.044 13.0 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|327310463|ref|YP_004337360.1| - 1e-05 25.0 0.0 0.0066 15.7 0.0 2.1 2 0 0 2 2 2 2 YheC/D like ATP-grasp Ins134_P3_kin PF05770.11 gi|327310463|ref|YP_004337360.1| - 0.15 11.6 0.0 0.75 9.3 0.1 2.0 2 0 0 2 2 2 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain Herpes_gp2 PF05955.11 gi|327310463|ref|YP_004337360.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Equine herpesvirus glycoprotein gp2 UPF0051 PF01458.17 gi|327310465|ref|YP_004337362.1| - 2.2e-62 210.6 1.6 2.3e-62 210.5 0.3 1.6 2 0 0 2 2 2 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|327310466|ref|YP_004337363.1| - 6e-21 75.4 0.0 8.3e-21 74.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310466|ref|YP_004337363.1| - 6.3e-10 39.3 0.0 0.00094 19.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|327310466|ref|YP_004337363.1| - 2.3e-05 24.6 0.0 3.5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|327310466|ref|YP_004337363.1| - 5.2e-05 22.8 0.0 0.015 14.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|327310466|ref|YP_004337363.1| - 0.00014 21.5 0.1 0.00028 20.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|327310466|ref|YP_004337363.1| - 0.002 18.6 0.0 0.003 18.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|327310466|ref|YP_004337363.1| - 0.0077 16.2 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_17 PF13207.6 gi|327310466|ref|YP_004337363.1| - 0.0088 16.5 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain MutS_V PF00488.21 gi|327310466|ref|YP_004337363.1| - 0.016 15.2 0.1 1.6 8.7 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_30 PF13604.6 gi|327310466|ref|YP_004337363.1| - 0.019 14.7 0.0 0.035 13.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|327310466|ref|YP_004337363.1| - 0.023 15.1 0.0 0.033 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|327310466|ref|YP_004337363.1| - 0.036 14.0 0.0 0.061 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|327310466|ref|YP_004337363.1| - 0.056 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|327310466|ref|YP_004337363.1| - 0.062 12.5 0.1 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_22 PF13401.6 gi|327310466|ref|YP_004337363.1| - 0.072 13.4 0.0 0.21 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|327310466|ref|YP_004337363.1| - 0.12 11.9 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|327310466|ref|YP_004337363.1| - 0.13 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|327310466|ref|YP_004337363.1| - 0.19 11.5 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_18 PF13238.6 gi|327310466|ref|YP_004337363.1| - 0.19 12.3 0.0 0.82 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|327310466|ref|YP_004337363.1| - 0.19 11.7 0.0 0.38 10.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|327310466|ref|YP_004337363.1| - 0.19 11.2 0.0 0.41 10.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Aminotran_3 PF00202.21 gi|327310467|ref|YP_004337364.1| - 2.7e-120 401.7 0.0 3.4e-120 401.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|327310467|ref|YP_004337364.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DUF5439 PF17507.2 gi|327310468|ref|YP_004337365.1| - 0.13 12.5 0.1 0.47 10.7 0.0 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5439) NucS PF01939.16 gi|327310469|ref|YP_004337366.1| - 1.6e-50 171.6 0.0 1.9e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS PDDEXK_4 PF14281.6 gi|327310469|ref|YP_004337366.1| - 0.0024 18.1 0.0 0.0034 17.6 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UPF0102 PF02021.17 gi|327310469|ref|YP_004337366.1| - 0.031 14.5 0.2 0.064 13.5 0.2 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0102 Peptidase_M42 PF05343.14 gi|327310471|ref|YP_004337368.1| - 9.6e-83 277.6 0.0 1.1e-82 277.4 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|327310471|ref|YP_004337368.1| - 3.3e-09 36.8 0.0 6.4e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|327310471|ref|YP_004337368.1| - 1.6e-06 27.9 0.0 7.4e-06 25.8 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|327310471|ref|YP_004337368.1| - 1.1e-05 24.5 0.0 0.00029 19.8 0.0 2.1 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Lactamase_B_2 PF12706.7 gi|327310472|ref|YP_004337369.1| - 5.7e-07 29.3 0.0 1.1e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|327310472|ref|YP_004337369.1| - 1.5e-06 28.2 0.0 2.4e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|327310472|ref|YP_004337369.1| - 0.11 12.5 0.1 0.59 10.1 0.0 2.0 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily MS_channel PF00924.18 gi|327310473|ref|YP_004337370.1| - 2.6e-19 69.6 0.3 4.2e-19 68.9 0.3 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel Aminotran_1_2 PF00155.21 gi|327310474|ref|YP_004337371.1| - 4.5e-59 200.5 0.0 5.1e-59 200.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|327310474|ref|YP_004337371.1| - 3.3e-09 35.8 0.0 4.5e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|327310474|ref|YP_004337371.1| - 3.8e-08 33.1 0.0 6.2e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|327310474|ref|YP_004337371.1| - 0.00059 18.9 0.0 0.00097 18.2 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_MocR PF12897.7 gi|327310474|ref|YP_004337371.1| - 0.042 12.6 0.0 0.074 11.8 0.0 1.3 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Glyco_hydro_57 PF03065.15 gi|327310475|ref|YP_004337372.1| - 3.7e-23 82.2 0.0 5.9e-23 81.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF3536 PF12055.8 gi|327310475|ref|YP_004337372.1| - 2e-20 73.2 0.1 3.5e-20 72.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) ABC_tran PF00005.27 gi|327310477|ref|YP_004337374.1| - 1.3e-32 113.2 0.0 1.7e-32 112.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310477|ref|YP_004337374.1| - 6.9e-11 42.5 0.5 0.0003 20.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|327310477|ref|YP_004337374.1| - 3.6e-05 24.1 0.0 7.6e-05 23.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327310477|ref|YP_004337374.1| - 0.00014 22.3 0.0 0.00024 21.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|327310477|ref|YP_004337374.1| - 0.00018 21.0 0.0 0.0014 18.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|327310477|ref|YP_004337374.1| - 0.00076 19.2 0.0 0.0022 17.8 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_23 PF13476.6 gi|327310477|ref|YP_004337374.1| - 0.0013 19.3 0.0 0.0016 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|327310477|ref|YP_004337374.1| - 0.0054 16.6 0.0 0.016 15.1 0.0 1.8 1 0 0 1 1 1 1 NTPase SbcCD_C PF13558.6 gi|327310477|ref|YP_004337374.1| - 0.0057 16.9 0.0 0.09 13.0 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.6 gi|327310477|ref|YP_004337374.1| - 0.0077 16.0 0.2 0.012 15.3 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|327310477|ref|YP_004337374.1| - 0.0087 16.5 0.0 0.019 15.4 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|327310477|ref|YP_004337374.1| - 0.022 13.8 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|327310477|ref|YP_004337374.1| - 0.024 15.0 0.3 0.038 14.3 0.3 1.6 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|327310477|ref|YP_004337374.1| - 0.038 13.4 0.2 0.37 10.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein NACHT PF05729.12 gi|327310477|ref|YP_004337374.1| - 0.041 13.8 0.9 0.058 13.3 0.2 1.6 2 0 0 2 2 2 0 NACHT domain RsgA_GTPase PF03193.16 gi|327310477|ref|YP_004337374.1| - 0.057 13.3 0.1 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|327310477|ref|YP_004337374.1| - 0.068 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|327310477|ref|YP_004337374.1| - 0.13 12.1 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|327310477|ref|YP_004337374.1| - 0.14 12.3 0.2 0.28 11.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|327310477|ref|YP_004337374.1| - 0.15 11.7 0.4 0.25 11.0 0.4 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.19 gi|327310477|ref|YP_004337374.1| - 0.16 11.6 0.3 0.25 10.9 0.3 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|327310477|ref|YP_004337374.1| - 0.16 9.5 0.1 0.21 9.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ATPase_2 PF01637.18 gi|327310477|ref|YP_004337374.1| - 0.16 11.9 0.1 0.26 11.2 0.1 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|327310477|ref|YP_004337374.1| - 0.16 11.2 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 gi|327310477|ref|YP_004337374.1| - 0.19 11.1 0.1 0.35 10.2 0.1 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PIF1 PF05970.14 gi|327310477|ref|YP_004337374.1| - 0.2 10.8 0.1 0.29 10.2 0.1 1.1 1 0 0 1 1 1 0 PIF1-like helicase AAA_15 PF13175.6 gi|327310477|ref|YP_004337374.1| - 0.22 11.2 0.0 0.28 10.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|327310477|ref|YP_004337374.1| - 0.22 11.5 0.3 0.41 10.7 0.3 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 gi|327310477|ref|YP_004337374.1| - 0.25 9.9 0.0 0.33 9.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|327310478|ref|YP_004337375.1| - 2.3e-23 82.9 13.5 2.3e-23 82.9 13.5 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|327310479|ref|YP_004337376.1| - 8.1e-35 120.6 0.4 1e-34 120.3 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF5026 PF16429.5 gi|327310480|ref|YP_004337377.1| - 0.065 13.3 0.0 0.088 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5026) Aldo_ket_red PF00248.21 gi|327310481|ref|YP_004337378.1| - 6.7e-69 232.3 0.0 7.6e-69 232.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Synaptonemal_3 PF15191.6 gi|327310481|ref|YP_004337378.1| - 0.05 13.4 0.1 0.22 11.3 0.1 2.0 2 0 0 2 2 2 0 Synaptonemal complex central element protein 3 DEAD PF00270.29 gi|327310482|ref|YP_004337379.1| - 3.8e-29 101.7 0.0 8.6e-29 100.5 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|327310482|ref|YP_004337379.1| - 1.3e-16 60.9 0.0 5.3e-16 58.9 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|327310482|ref|YP_004337379.1| - 1.6e-16 60.7 0.0 1.2e-15 57.8 0.0 2.4 1 1 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|327310482|ref|YP_004337379.1| - 1.1e-08 35.3 0.0 2.4e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HypA PF01155.19 gi|327310482|ref|YP_004337379.1| - 0.0035 17.3 0.0 0.0087 16.1 0.0 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_19 PF13245.6 gi|327310482|ref|YP_004337379.1| - 0.0049 17.2 0.1 0.022 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|327310482|ref|YP_004337379.1| - 0.014 15.6 0.1 0.068 13.4 0.1 2.1 1 1 0 1 1 1 0 AAA domain Phage_term_smal PF05944.12 gi|327310482|ref|YP_004337379.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Phage small terminase subunit Acid_phosphat_B PF03767.14 gi|327310483|ref|YP_004337380.1| - 3e-07 30.3 0.0 4.1e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.6 gi|327310483|ref|YP_004337380.1| - 0.03 14.4 0.0 0.29 11.3 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UPF0126 PF03458.13 gi|327310484|ref|YP_004337381.1| - 1 9.3 8.9 0.17 11.8 2.8 2.2 1 1 0 2 2 2 0 UPF0126 domain T2SSE PF00437.20 gi|327310486|ref|YP_004337383.1| - 5.5e-37 127.3 0.0 8e-37 126.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|327310486|ref|YP_004337383.1| - 9.3e-05 22.1 0.0 0.00021 20.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|327310486|ref|YP_004337383.1| - 0.0013 19.3 0.0 0.0023 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|327310486|ref|YP_004337383.1| - 0.0023 17.4 0.1 0.0056 16.1 0.1 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|327310486|ref|YP_004337383.1| - 0.0023 18.2 0.0 0.0046 17.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|327310486|ref|YP_004337383.1| - 0.0027 18.0 0.8 0.012 15.9 0.1 2.2 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|327310486|ref|YP_004337383.1| - 0.003 18.1 0.0 0.008 16.7 0.0 1.6 2 0 0 2 2 1 1 ABC transporter cobW PF02492.19 gi|327310486|ref|YP_004337383.1| - 0.0033 17.0 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|327310486|ref|YP_004337383.1| - 0.013 15.0 0.0 0.033 13.7 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_21 PF13304.6 gi|327310486|ref|YP_004337383.1| - 0.015 15.2 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system MMR_HSR1 PF01926.23 gi|327310486|ref|YP_004337383.1| - 0.023 14.8 0.0 0.046 13.8 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|327310486|ref|YP_004337383.1| - 0.028 14.2 0.2 0.055 13.2 0.2 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TrwB_AAD_bind PF10412.9 gi|327310486|ref|YP_004337383.1| - 0.029 13.3 0.0 0.043 12.7 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain RsgA_GTPase PF03193.16 gi|327310486|ref|YP_004337383.1| - 0.032 14.2 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Pox_A32 PF04665.12 gi|327310486|ref|YP_004337383.1| - 0.041 13.3 0.2 0.073 12.5 0.2 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_19 PF13245.6 gi|327310486|ref|YP_004337383.1| - 0.044 14.1 0.0 0.16 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|327310486|ref|YP_004337383.1| - 0.051 14.0 0.0 0.12 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|327310486|ref|YP_004337383.1| - 0.06 13.3 0.1 0.1 12.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.21 gi|327310486|ref|YP_004337383.1| - 0.072 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Dynamin_N PF00350.23 gi|327310486|ref|YP_004337383.1| - 0.085 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Dynamin family MobB PF03205.14 gi|327310486|ref|YP_004337383.1| - 0.086 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Glycos_trans_3N PF02885.17 gi|327310486|ref|YP_004337383.1| - 0.12 12.2 0.2 18 5.3 0.1 3.1 3 0 0 3 3 3 0 Glycosyl transferase family, helical bundle domain AAA_15 PF13175.6 gi|327310486|ref|YP_004337383.1| - 0.2 11.3 0.0 0.29 10.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AvrPto PF11592.8 gi|327310487|ref|YP_004337384.1| - 0.045 13.8 0.0 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Central core of the bacterial effector protein AvrPto Bd3614_N PF14442.6 gi|327310487|ref|YP_004337384.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 Bd3614-like deaminase N-terminal ETF PF01012.21 gi|327310488|ref|YP_004337385.1| - 6.4e-38 130.5 0.0 8.6e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|327310489|ref|YP_004337386.1| - 6e-43 146.8 0.5 1.1e-42 145.9 0.5 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|327310489|ref|YP_004337386.1| - 6.7e-33 112.6 0.6 1.4e-32 111.6 0.6 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.22 gi|327310489|ref|YP_004337386.1| - 0.0079 15.9 0.9 0.14 11.8 0.9 2.5 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Thymidylate_kin PF02223.17 gi|327310490|ref|YP_004337387.1| - 4.7e-46 156.8 0.0 5.5e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|327310490|ref|YP_004337387.1| - 1.1e-06 29.2 0.0 9.3e-06 26.2 0.0 2.2 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|327310490|ref|YP_004337387.1| - 1.2e-06 28.6 0.0 4.5e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_28 PF13521.6 gi|327310490|ref|YP_004337387.1| - 0.00024 21.4 0.0 0.00053 20.3 0.0 1.6 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|327310490|ref|YP_004337387.1| - 0.03 14.6 0.0 0.056 13.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|327310490|ref|YP_004337387.1| - 0.03 14.7 0.1 0.69 10.3 0.0 2.6 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|327310490|ref|YP_004337387.1| - 0.064 13.4 0.0 0.27 11.4 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|327310490|ref|YP_004337387.1| - 0.066 13.6 0.1 0.11 12.8 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|327310490|ref|YP_004337387.1| - 0.089 12.9 0.0 0.42 10.7 0.0 1.9 2 0 0 2 2 2 0 Shikimate kinase Ploopntkinase1 PF18748.1 gi|327310490|ref|YP_004337387.1| - 0.19 11.2 0.0 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 P-loop Nucleotide Kinase1 GATase PF00117.28 gi|327310491|ref|YP_004337388.1| - 5.3e-19 68.7 0.0 6.4e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|327310491|ref|YP_004337388.1| - 0.00032 20.5 0.0 0.09 12.5 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 GATase_3 PF07685.14 gi|327310491|ref|YP_004337388.1| - 0.00037 20.2 0.0 0.00065 19.4 0.0 1.4 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|327310491|ref|YP_004337388.1| - 0.0026 17.6 0.0 0.012 15.5 0.0 1.8 2 0 0 2 2 2 1 SNO glutamine amidotransferase family HU-CCDC81_bac_1 PF18174.1 gi|327310491|ref|YP_004337388.1| - 0.2 11.6 0.0 0.41 10.6 0.0 1.5 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 1 HisG PF01634.18 gi|327310492|ref|YP_004337389.1| - 7.5e-45 152.8 0.1 1.1e-44 152.3 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|327310492|ref|YP_004337389.1| - 1.6e-19 69.8 0.1 2.9e-19 69.0 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain CbiX PF01903.17 gi|327310492|ref|YP_004337389.1| - 0.055 13.8 0.1 1.6 9.1 0.0 2.8 3 1 1 4 4 4 0 CbiX Aminotran_1_2 PF00155.21 gi|327310493|ref|YP_004337390.1| - 1.3e-32 113.4 0.0 1.6e-32 113.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|327310493|ref|YP_004337390.1| - 0.0042 16.0 0.0 0.0059 15.5 0.0 1.1 1 0 0 1 1 1 1 Allinase Astro_capsid_p2 PF16580.5 gi|327310493|ref|YP_004337390.1| - 0.28 10.6 0.0 0.41 10.0 0.0 1.1 1 0 0 1 1 1 0 C-terminal tail of astrovirus capsid projection or spike PaREP1 PF05942.11 gi|327310494|ref|YP_004337391.1| - 8.9e-22 77.2 7.7 1.2e-21 76.8 7.7 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ParD PF09386.10 gi|327310494|ref|YP_004337391.1| - 0.0097 16.3 0.1 0.021 15.2 0.1 1.6 1 0 0 1 1 1 1 Antitoxin ParD HEPN PF05168.14 gi|327310494|ref|YP_004337391.1| - 0.016 15.3 3.4 0.031 14.4 3.4 1.5 1 1 0 1 1 1 0 HEPN domain DNA_pol_B_thumb PF14791.6 gi|327310494|ref|YP_004337391.1| - 0.019 15.1 0.7 1.7 8.9 0.1 2.2 2 0 0 2 2 2 0 DNA polymerase beta thumb HisKA_3 PF07730.13 gi|327310494|ref|YP_004337391.1| - 3.2 8.3 6.8 15 6.2 0.2 2.9 3 0 0 3 3 3 0 Histidine kinase PRA-CH PF01502.18 gi|327310495|ref|YP_004337392.1| - 2.5e-30 104.1 0.1 3.3e-30 103.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 gi|327310496|ref|YP_004337393.1| - 2.1e-17 63.3 0.1 2.3e-17 63.2 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|327310496|ref|YP_004337393.1| - 0.0041 17.3 0.1 0.0062 16.7 0.1 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Histidinol_dh PF00815.20 gi|327310497|ref|YP_004337394.1| - 2.4e-72 244.2 0.0 3.6e-72 243.6 0.0 1.2 1 0 0 1 1 1 1 Histidinol dehydrogenase VSP PF03302.13 gi|327310498|ref|YP_004337395.1| - 1.1 8.1 6.8 0.053 12.4 1.4 1.5 2 0 0 2 2 2 0 Giardia variant-specific surface protein DUF2973 PF11189.8 gi|327310499|ref|YP_004337396.1| - 0.096 12.8 0.3 0.17 12.0 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2973) Syndecan PF01034.20 gi|327310499|ref|YP_004337396.1| - 0.22 11.5 2.1 0.38 10.7 2.1 1.4 1 0 0 1 1 1 0 Syndecan domain MAF_flag10 PF01973.18 gi|327310503|ref|YP_004337400.1| - 9.6e-12 44.9 0.0 1.4e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 PikAIV_N PF18605.1 gi|327310504|ref|YP_004337401.1| - 0.099 12.2 3.2 0.86 9.2 0.2 2.3 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain Fer4_2 PF12797.7 gi|327310505|ref|YP_004337402.1| - 2e-08 33.8 12.3 5.3e-05 23.1 2.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327310505|ref|YP_004337402.1| - 4e-07 30.5 8.3 0.00046 20.7 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|327310505|ref|YP_004337402.1| - 1.4e-06 28.3 5.4 2e-06 27.8 5.4 1.4 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_11 PF13247.6 gi|327310505|ref|YP_004337402.1| - 2.1e-06 27.8 7.8 2.9e-06 27.3 7.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310505|ref|YP_004337402.1| - 4.7e-05 23.4 26.8 0.00093 19.3 1.8 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|327310505|ref|YP_004337402.1| - 0.00018 21.2 2.7 0.00018 21.2 2.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|327310505|ref|YP_004337402.1| - 0.00065 19.8 15.1 0.0013 18.9 15.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|327310505|ref|YP_004337402.1| - 0.00067 20.0 7.4 0.0062 17.0 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310505|ref|YP_004337402.1| - 0.0013 19.3 11.6 0.022 15.3 2.1 2.3 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327310505|ref|YP_004337402.1| - 0.007 16.8 3.3 0.007 16.8 3.3 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|327310505|ref|YP_004337402.1| - 0.021 14.9 15.8 0.026 14.6 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|327310505|ref|YP_004337402.1| - 0.063 14.3 3.7 0.063 14.3 3.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327310505|ref|YP_004337402.1| - 0.088 13.8 1.9 0.088 13.8 1.9 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|327310505|ref|YP_004337402.1| - 0.34 11.1 14.7 1.6 8.9 15.0 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|327310505|ref|YP_004337402.1| - 2.6 7.8 14.8 0.22 11.3 4.8 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.24 gi|327310506|ref|YP_004337403.1| - 3.3e-17 63.1 1.4 3.6e-09 36.7 0.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|327310506|ref|YP_004337403.1| - 1.4e-11 44.1 0.8 1.4e-09 37.6 0.1 2.2 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|327310506|ref|YP_004337403.1| - 1.9e-10 40.5 0.5 9.2e-07 28.4 0.1 2.8 2 1 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|327310506|ref|YP_004337403.1| - 1.1e-09 37.9 0.1 5.3e-09 35.7 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|327310506|ref|YP_004337403.1| - 1.9e-09 37.4 0.0 2.8e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|327310506|ref|YP_004337403.1| - 3.6e-09 36.7 0.0 1e-08 35.3 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|327310506|ref|YP_004337403.1| - 3.9e-09 36.1 0.0 9.6e-09 34.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|327310506|ref|YP_004337403.1| - 7.2e-09 34.8 0.6 1.5e-08 33.8 0.3 1.6 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|327310506|ref|YP_004337403.1| - 7.6e-07 28.3 1.1 0.0019 17.2 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|327310506|ref|YP_004337403.1| - 1.3e-06 27.9 0.5 4.6e-06 26.1 0.2 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|327310506|ref|YP_004337403.1| - 2e-06 27.2 0.8 1.2e-05 24.5 0.8 1.9 1 1 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 gi|327310506|ref|YP_004337403.1| - 1.6e-05 24.2 0.5 2.4e-05 23.6 0.5 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|327310506|ref|YP_004337403.1| - 0.00011 21.7 0.0 0.0004 19.8 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|327310506|ref|YP_004337403.1| - 0.00012 22.5 0.1 0.0014 19.1 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|327310506|ref|YP_004337403.1| - 0.0062 16.5 1.2 0.01 15.9 0.1 1.9 3 0 0 3 3 2 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|327310506|ref|YP_004337403.1| - 0.03 14.8 0.1 0.1 13.1 0.2 1.8 2 1 0 2 2 2 0 Putative NAD(P)-binding GDI PF00996.18 gi|327310506|ref|YP_004337403.1| - 0.045 12.3 0.0 2.4 6.6 0.0 2.1 1 1 1 2 2 2 0 GDP dissociation inhibitor ApbA PF02558.16 gi|327310506|ref|YP_004337403.1| - 0.093 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|327310506|ref|YP_004337403.1| - 0.11 12.4 1.1 0.15 11.9 0.2 1.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|327310506|ref|YP_004337403.1| - 0.12 11.7 0.2 0.27 10.5 0.2 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MoaE PF02391.17 gi|327310507|ref|YP_004337404.1| - 4.7e-24 84.8 0.1 6.4e-24 84.4 0.1 1.1 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|327310507|ref|YP_004337404.1| - 3.2e-17 62.9 0.0 6.9e-17 61.9 0.0 1.6 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|327310507|ref|YP_004337404.1| - 0.021 14.9 0.0 0.078 13.0 0.0 2.0 1 0 0 1 1 1 0 ThiS-like ubiquitin LAL_C2 PF18603.1 gi|327310507|ref|YP_004337404.1| - 0.063 13.4 0.4 0.34 11.1 0.4 2.1 1 1 0 1 1 1 0 L-amino acid ligase C-terminal domain 2 Ub-Mut7C PF14451.6 gi|327310507|ref|YP_004337404.1| - 0.093 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Mut7-C ubiquitin AAA_14 PF13173.6 gi|327310508|ref|YP_004337405.1| - 5.5e-24 84.7 0.0 8.7e-24 84.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|327310508|ref|YP_004337405.1| - 1.8e-07 31.3 0.0 3.7e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_16 PF13191.6 gi|327310508|ref|YP_004337405.1| - 0.0074 16.7 0.0 0.025 15.0 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|327310508|ref|YP_004337405.1| - 0.015 15.1 0.0 0.026 14.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|327310508|ref|YP_004337405.1| - 0.027 14.4 0.0 0.052 13.4 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|327310508|ref|YP_004337405.1| - 0.065 12.8 0.0 0.17 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF1471 PF07338.13 gi|327310508|ref|YP_004337405.1| - 0.18 11.8 0.0 5.6 7.0 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1471) ATPase PF06745.13 gi|327310510|ref|YP_004337407.1| - 3.1e-66 223.0 0.1 3.6e-66 222.8 0.1 1.0 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|327310510|ref|YP_004337407.1| - 6.8e-05 22.3 0.1 9.5e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 Rad51 GvpD PF07088.11 gi|327310510|ref|YP_004337407.1| - 0.00011 21.0 0.8 0.00077 18.2 0.8 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.6 gi|327310510|ref|YP_004337407.1| - 0.00049 19.7 0.0 0.00076 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|327310510|ref|YP_004337407.1| - 0.00085 18.9 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ResIII PF04851.15 gi|327310510|ref|YP_004337407.1| - 0.0059 16.6 0.1 0.012 15.6 0.1 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DnaB_C PF03796.15 gi|327310510|ref|YP_004337407.1| - 0.0069 15.7 0.0 0.0095 15.3 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain DEAD PF00270.29 gi|327310510|ref|YP_004337407.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|327310510|ref|YP_004337407.1| - 0.035 14.5 0.0 0.054 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|327310510|ref|YP_004337407.1| - 0.041 14.1 0.1 0.09 13.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain PAXNEB PF05625.11 gi|327310510|ref|YP_004337407.1| - 0.054 12.6 0.4 0.081 12.0 0.4 1.2 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.9 gi|327310510|ref|YP_004337407.1| - 0.056 12.7 0.0 0.072 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.17 gi|327310510|ref|YP_004337407.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein PCNA_N PF00705.18 gi|327310511|ref|YP_004337408.1| - 1.1e-11 44.6 0.0 2.8e-11 43.2 0.0 1.6 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|327310511|ref|YP_004337408.1| - 3e-09 37.1 0.1 4.6e-09 36.5 0.1 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain DUF364 PF04016.12 gi|327310513|ref|YP_004337410.1| - 0.0023 17.5 0.0 0.0032 17.0 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation PS_pyruv_trans PF04230.13 gi|327310513|ref|YP_004337410.1| - 0.016 15.1 0.0 0.092 12.6 0.0 1.9 1 1 0 2 2 2 0 Polysaccharide pyruvyl transferase FAD_binding_2 PF00890.24 gi|327310514|ref|YP_004337411.1| - 7.8e-113 377.7 0.1 9.6e-113 377.4 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|327310514|ref|YP_004337411.1| - 2.8e-38 130.8 0.0 4.7e-38 130.1 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|327310514|ref|YP_004337411.1| - 0.00013 21.3 0.3 0.001 18.4 0.1 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|327310514|ref|YP_004337411.1| - 0.0031 17.2 0.1 0.013 15.1 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|327310514|ref|YP_004337411.1| - 0.015 14.6 0.1 0.69 9.1 0.0 2.8 3 0 0 3 3 3 0 Thi4 family GIDA PF01134.22 gi|327310514|ref|YP_004337411.1| - 0.017 14.2 0.3 0.87 8.6 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|327310514|ref|YP_004337411.1| - 0.052 12.9 0.3 1.4 8.2 0.1 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase Fer2_3 PF13085.6 gi|327310515|ref|YP_004337412.1| - 9.1e-35 119.0 0.2 1.6e-34 118.2 0.2 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|327310515|ref|YP_004337412.1| - 1.1e-12 48.2 0.8 1.1e-12 48.2 0.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310515|ref|YP_004337412.1| - 1.4e-09 37.9 1.9 1.4e-09 37.9 1.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310515|ref|YP_004337412.1| - 3.5e-07 30.6 0.8 3.5e-07 30.6 0.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327310515|ref|YP_004337412.1| - 6.1e-07 29.9 14.7 3.1e-05 24.5 5.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327310515|ref|YP_004337412.1| - 1e-06 28.8 2.0 1e-06 28.8 2.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327310515|ref|YP_004337412.1| - 2.6e-05 25.0 3.7 3.9e-05 24.5 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|327310515|ref|YP_004337412.1| - 3.7e-05 23.4 3.3 3.7e-05 23.4 3.3 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.27 gi|327310515|ref|YP_004337412.1| - 5.8e-05 23.0 0.5 5.8e-05 23.0 0.5 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.6 gi|327310515|ref|YP_004337412.1| - 0.0005 20.2 3.5 0.076 13.2 0.1 2.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327310515|ref|YP_004337412.1| - 0.0022 18.4 0.6 0.0022 18.4 0.6 3.1 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|327310515|ref|YP_004337412.1| - 0.0041 17.1 1.6 0.0041 17.1 1.6 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327310515|ref|YP_004337412.1| - 0.013 15.6 0.6 0.013 15.6 0.6 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327310515|ref|YP_004337412.1| - 0.043 13.9 4.5 0.043 13.9 4.5 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|327310515|ref|YP_004337412.1| - 0.046 13.5 0.5 2.3 8.0 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|327310515|ref|YP_004337412.1| - 0.08 13.9 5.9 0.08 13.9 5.9 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|327310515|ref|YP_004337412.1| - 3.9 8.4 7.6 0.88 10.5 2.5 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Sdh_cyt PF01127.22 gi|327310516|ref|YP_004337413.1| - 2.8e-10 40.3 3.4 4.4e-10 39.6 3.4 1.3 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|327310517|ref|YP_004337414.1| - 0.00039 20.4 2.6 0.00067 19.7 2.6 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sigma_reg_N PF13800.6 gi|327310517|ref|YP_004337414.1| - 0.25 11.7 7.5 0.37 11.1 0.9 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF5383 PF17355.2 gi|327310517|ref|YP_004337414.1| - 0.82 10.1 9.8 4.9 7.6 5.3 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5383) DUF2207 PF09972.9 gi|327310517|ref|YP_004337414.1| - 6 5.5 7.5 9.7 4.8 7.5 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) NUDIX PF00293.28 gi|327310518|ref|YP_004337415.1| - 2.4e-12 47.1 0.2 2.9e-12 46.8 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain PTH2 PF01981.16 gi|327310519|ref|YP_004337416.1| - 1e-39 135.5 0.0 1.1e-39 135.3 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 tRNA-synt_1 PF00133.22 gi|327310520|ref|YP_004337417.1| - 1.7e-159 531.9 0.3 2.2e-159 531.5 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|327310520|ref|YP_004337417.1| - 3.1e-29 101.9 0.2 7.9e-29 100.6 0.2 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|327310520|ref|YP_004337417.1| - 1.4e-25 89.9 1.9 2.7e-09 36.3 0.5 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|327310520|ref|YP_004337417.1| - 1.5e-08 34.4 0.0 3.3e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|327310520|ref|YP_004337417.1| - 2.7e-08 33.5 0.0 8.1e-06 25.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|327310520|ref|YP_004337417.1| - 1.5e-05 24.1 0.0 4.7e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) RHH_1 PF01402.21 gi|327310520|ref|YP_004337417.1| - 0.061 13.3 0.4 0.73 9.9 0.0 2.7 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family zinc_ribbon_2 PF13240.6 gi|327310520|ref|YP_004337417.1| - 0.22 11.3 0.2 21 5.0 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HscB_4_cys PF18256.1 gi|327310520|ref|YP_004337417.1| - 0.38 10.6 3.7 2.4 8.1 0.5 2.4 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Phos_pyr_kin PF08543.12 gi|327310522|ref|YP_004337419.1| - 1.1e-90 303.3 0.6 1.5e-90 302.9 0.6 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|327310522|ref|YP_004337419.1| - 5.9e-61 204.9 0.1 1.1e-60 204.0 0.1 1.5 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|327310522|ref|YP_004337419.1| - 6.3e-13 48.7 0.2 9.4e-13 48.1 0.2 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|327310522|ref|YP_004337419.1| - 0.035 13.6 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate kinase HK PF02110.15 gi|327310522|ref|YP_004337419.1| - 0.094 12.1 0.2 0.17 11.3 0.2 1.4 1 0 0 1 1 1 0 Hydroxyethylthiazole kinase family acVLRF1 PF18859.1 gi|327310523|ref|YP_004337420.1| - 0.014 15.7 0.0 0.022 15.1 0.0 1.3 1 0 0 1 1 1 0 Actinobacteria/chloroflexi VLRF1 release factor Lactamase_B_6 PF16661.5 gi|327310525|ref|YP_004337422.1| - 1.4e-16 60.5 0.0 2e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Beta-Casp PF10996.8 gi|327310525|ref|YP_004337422.1| - 1.1e-14 54.7 0.0 3.5e-14 53.0 0.0 1.9 2 1 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|327310525|ref|YP_004337422.1| - 1.8e-14 53.4 0.2 3.8e-14 52.4 0.0 1.6 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|327310525|ref|YP_004337422.1| - 1.5e-12 47.9 1.6 1.2e-11 45.0 1.6 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|327310525|ref|YP_004337422.1| - 5.4e-12 45.6 0.1 2.7e-11 43.3 0.1 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|327310525|ref|YP_004337422.1| - 0.13 12.1 0.0 0.97 9.3 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase superfamily domain Ribosomal_L26 PF16906.5 gi|327310526|ref|YP_004337423.1| - 4.3e-29 100.8 0.6 5.5e-29 100.5 0.6 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|327310526|ref|YP_004337423.1| - 4.8e-07 29.5 5.8 4.8e-07 29.5 5.8 1.6 2 0 0 2 2 2 1 KOW motif tRNA-synt_2 PF00152.20 gi|327310528|ref|YP_004337425.1| - 1.5e-81 273.9 0.0 1.8e-81 273.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|327310528|ref|YP_004337425.1| - 7.8e-11 41.8 1.0 1.4e-10 41.0 1.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|327310528|ref|YP_004337425.1| - 0.00097 18.7 0.1 0.29 10.6 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DUF433 PF04255.14 gi|327310528|ref|YP_004337425.1| - 0.093 12.6 0.0 0.44 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF433) PCMT PF01135.19 gi|327310529|ref|YP_004337426.1| - 7.2e-61 205.6 0.0 8.5e-61 205.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|327310529|ref|YP_004337426.1| - 2.1e-05 24.3 0.0 2.8e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|327310529|ref|YP_004337426.1| - 2.6e-05 24.1 0.0 3.4e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|327310529|ref|YP_004337426.1| - 4.8e-05 22.6 0.0 5.9e-05 22.3 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|327310529|ref|YP_004337426.1| - 0.00047 21.1 0.0 0.00076 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310529|ref|YP_004337426.1| - 0.0021 18.8 0.0 0.0035 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|327310529|ref|YP_004337426.1| - 0.014 15.1 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|327310529|ref|YP_004337426.1| - 0.015 14.6 0.0 0.02 14.2 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.18 gi|327310529|ref|YP_004337426.1| - 0.016 14.6 0.0 0.021 14.2 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|327310529|ref|YP_004337426.1| - 0.031 13.8 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|327310529|ref|YP_004337426.1| - 0.059 13.3 0.0 0.091 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327310529|ref|YP_004337426.1| - 0.066 13.9 0.0 0.11 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327310529|ref|YP_004337426.1| - 0.15 11.9 0.0 0.22 11.3 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain NUDIX PF00293.28 gi|327310530|ref|YP_004337427.1| - 3.2e-11 43.4 0.2 3.6e-11 43.2 0.2 1.0 1 0 0 1 1 1 1 NUDIX domain Usp PF00582.26 gi|327310532|ref|YP_004337429.1| - 1.2e-33 116.5 3.3 1.4e-33 116.4 3.3 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|327310532|ref|YP_004337429.1| - 0.018 14.9 0.2 3.5 7.5 0.0 2.2 2 0 0 2 2 2 0 Electron transfer flavoprotein domain Oxidored_nitro PF00148.19 gi|327310532|ref|YP_004337429.1| - 0.024 13.4 0.0 0.48 9.1 0.0 1.9 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase RQC PF09382.10 gi|327310532|ref|YP_004337429.1| - 0.098 12.4 0.0 0.22 11.3 0.0 1.6 1 1 0 1 1 1 0 RQC domain PGM_PMM_I PF02878.16 gi|327310532|ref|YP_004337429.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP_endonuc_2 PF01261.24 gi|327310532|ref|YP_004337429.1| - 0.15 11.5 0.0 0.81 9.1 0.0 1.8 1 1 0 2 2 2 0 Xylose isomerase-like TIM barrel DpnII-MboI PF18742.1 gi|327310535|ref|YP_004337432.1| - 0.042 13.5 0.0 0.054 13.1 0.0 1.2 1 0 0 1 1 1 0 REase_DpnII-MboI DUF4636 PF15468.6 gi|327310535|ref|YP_004337432.1| - 0.2 11.3 0.0 0.26 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4636) CbiA PF01656.23 gi|327310536|ref|YP_004337433.1| - 1e-05 25.6 0.0 1.2e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|327310536|ref|YP_004337433.1| - 5.4e-05 23.2 0.0 0.00029 20.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|327310536|ref|YP_004337433.1| - 0.003 16.8 0.2 0.0075 15.5 0.2 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_24 PF13479.6 gi|327310536|ref|YP_004337433.1| - 0.0047 16.7 0.0 0.049 13.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|327310536|ref|YP_004337433.1| - 0.019 14.4 0.0 0.025 14.0 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|327310536|ref|YP_004337433.1| - 0.029 13.8 0.0 0.073 12.5 0.0 1.6 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase T2SSE PF00437.20 gi|327310537|ref|YP_004337434.1| - 1.2e-13 50.7 0.3 2.3e-13 49.8 0.1 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_28 PF13521.6 gi|327310537|ref|YP_004337434.1| - 0.027 14.7 0.0 0.082 13.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF1999 PF09390.10 gi|327310537|ref|YP_004337434.1| - 0.11 12.2 0.3 0.32 10.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1999) AAA_30 PF13604.6 gi|327310537|ref|YP_004337434.1| - 0.13 12.0 0.7 0.51 10.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain HTH_24 PF13412.6 gi|327310539|ref|YP_004337436.1| - 0.01 15.4 0.5 0.092 12.3 0.0 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|327310539|ref|YP_004337436.1| - 0.018 15.2 0.1 0.1 12.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|327310539|ref|YP_004337436.1| - 0.036 13.6 0.1 0.075 12.6 0.1 1.5 1 0 0 1 1 1 0 winged helix-turn-helix CTV_P6 PF06706.11 gi|327310541|ref|YP_004337438.1| - 0.082 12.6 0.9 0.24 11.1 0.9 1.9 1 0 0 1 1 1 0 Citrus tristeza virus 6-kDa protein DUF4148 PF13663.6 gi|327310542|ref|YP_004337439.1| - 0.0003 20.9 5.1 0.00054 20.1 5.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4148) DUF4330 PF14221.6 gi|327310542|ref|YP_004337439.1| - 0.0012 19.1 1.4 0.0018 18.5 1.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4330) Pilin_N PF07790.11 gi|327310542|ref|YP_004337439.1| - 0.0056 17.6 0.7 0.009 16.9 0.7 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal SurA_N_2 PF13623.6 gi|327310542|ref|YP_004337439.1| - 0.12 12.2 0.3 0.18 11.7 0.3 1.1 1 0 0 1 1 1 0 SurA N-terminal domain DUF4307 PF14155.6 gi|327310542|ref|YP_004337439.1| - 0.18 11.6 3.8 0.37 10.6 3.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF2771 PF10969.8 gi|327310542|ref|YP_004337439.1| - 2.7 8.0 4.4 4.1 7.4 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) DUF192 PF02643.15 gi|327310543|ref|YP_004337440.1| - 0.0088 16.2 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 PQQ_3 PF13570.6 gi|327310545|ref|YP_004337442.1| - 0.027 15.0 0.9 0.29 11.7 1.3 2.2 2 0 0 2 2 2 0 PQQ-like domain UPRTase PF14681.6 gi|327310551|ref|YP_004337448.1| - 9e-52 175.5 0.0 1e-51 175.3 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|327310551|ref|YP_004337448.1| - 2.6e-10 40.0 0.8 4.5e-10 39.3 0.8 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF3646 PF12362.8 gi|327310551|ref|YP_004337448.1| - 0.0049 17.2 0.1 0.99 9.8 0.1 2.4 2 0 0 2 2 2 2 DNA polymerase III gamma and tau subunits C terminal Peptidase_M50 PF02163.22 gi|327310552|ref|YP_004337449.1| - 3.3e-08 33.1 7.3 6.9e-05 22.2 1.3 3.1 1 1 1 2 2 2 2 Peptidase family M50 TMEM71 PF15121.6 gi|327310552|ref|YP_004337449.1| - 0.17 11.5 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 TMEM71 protein family HEAT_2 PF13646.6 gi|327310553|ref|YP_004337450.1| - 6.8e-51 170.6 45.0 1.3e-13 51.2 4.1 4.5 1 1 5 6 6 6 6 HEAT repeats Peptidase_M1 PF01433.20 gi|327310553|ref|YP_004337450.1| - 2.8e-50 170.9 0.2 4.2e-50 170.3 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|327310553|ref|YP_004337450.1| - 7.2e-18 65.4 0.0 1.6e-17 64.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|327310553|ref|YP_004337450.1| - 4e-15 54.9 25.4 0.0047 17.5 0.2 7.0 6 0 0 6 6 6 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|327310553|ref|YP_004337450.1| - 5.6e-08 32.4 9.8 0.97 9.9 0.3 6.4 7 0 0 7 7 6 3 HEAT repeat Vitellogenin_N PF01347.22 gi|327310553|ref|YP_004337450.1| - 0.0028 16.1 0.1 0.082 11.3 0.0 2.2 1 1 1 2 2 2 1 Lipoprotein amino terminal region Cnd1 PF12717.7 gi|327310553|ref|YP_004337450.1| - 0.04 14.0 0.4 1.1 9.3 0.3 3.2 3 2 1 4 4 4 0 non-SMC mitotic condensation complex subunit 1 LPD39 PF18858.1 gi|327310553|ref|YP_004337450.1| - 0.12 12.5 5.9 2.3 8.2 0.8 2.6 2 0 0 2 2 2 0 Large polyvalent protein associated domain 39 Spore_III_AB PF09548.10 gi|327310553|ref|YP_004337450.1| - 0.12 12.4 0.8 0.73 9.9 0.5 2.2 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Adaptin_N PF01602.20 gi|327310553|ref|YP_004337450.1| - 0.13 10.8 0.0 0.38 9.2 0.0 1.7 1 0 0 1 1 1 0 Adaptin N terminal region RRF PF01765.19 gi|327310553|ref|YP_004337450.1| - 0.19 11.7 0.3 0.41 10.6 0.3 1.6 1 0 0 1 1 1 0 Ribosome recycling factor DUF4200 PF13863.6 gi|327310553|ref|YP_004337450.1| - 0.25 11.7 4.8 0.64 10.4 4.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) DUF4936 PF16290.5 gi|327310553|ref|YP_004337450.1| - 2.5 8.8 6.4 0.32 11.7 0.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4936) PhoH PF02562.16 gi|327310554|ref|YP_004337451.1| - 5.6e-50 169.6 0.0 7.1e-50 169.3 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|327310554|ref|YP_004337451.1| - 1.4e-07 31.3 0.3 4.7e-06 26.3 0.1 2.6 2 1 1 3 3 3 1 KH domain KH_5 PF13184.6 gi|327310554|ref|YP_004337451.1| - 1.1e-05 25.4 0.0 0.0018 18.3 0.0 2.5 2 0 0 2 2 2 1 NusA-like KH domain IstB_IS21 PF01695.17 gi|327310554|ref|YP_004337451.1| - 0.00057 19.7 0.1 0.0014 18.4 0.0 1.6 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|327310554|ref|YP_004337451.1| - 0.0062 16.3 0.0 0.061 13.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain KH_1 PF00013.29 gi|327310554|ref|YP_004337451.1| - 0.01 15.6 0.0 0.034 14.0 0.0 1.8 2 0 0 2 2 2 0 KH domain AAA_22 PF13401.6 gi|327310554|ref|YP_004337451.1| - 0.014 15.7 0.2 0.042 14.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|327310554|ref|YP_004337451.1| - 0.014 15.8 0.3 0.11 12.8 0.3 2.1 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|327310554|ref|YP_004337451.1| - 0.033 14.7 0.3 0.07 13.7 0.3 1.6 1 1 0 1 1 1 0 ABC transporter ATPase PF06745.13 gi|327310554|ref|YP_004337451.1| - 0.11 11.8 0.1 0.2 11.0 0.1 1.3 1 0 0 1 1 1 0 KaiC Acylphosphatase PF00708.18 gi|327310555|ref|YP_004337452.1| - 3.2e-14 53.1 0.0 3.5e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase CysG_dimeriser PF10414.9 gi|327310555|ref|YP_004337452.1| - 0.02 14.6 0.3 0.031 14.0 0.3 1.3 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region BLUF PF04940.12 gi|327310555|ref|YP_004337452.1| - 0.048 13.8 0.0 0.056 13.6 0.0 1.1 1 0 0 1 1 1 0 Sensors of blue-light using FAD Peptidase_A24 PF01478.18 gi|327310556|ref|YP_004337453.1| - 0.014 15.8 7.0 0.014 15.8 7.0 2.0 2 0 0 2 2 2 0 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|327310556|ref|YP_004337453.1| - 0.036 14.6 0.1 0.082 13.4 0.0 1.6 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II ATP-synt_A PF00119.20 gi|327310556|ref|YP_004337453.1| - 0.044 13.7 4.1 0.065 13.2 4.1 1.2 1 0 0 1 1 1 0 ATP synthase A chain DUF3487 PF11990.8 gi|327310556|ref|YP_004337453.1| - 0.074 12.9 0.2 0.074 12.9 0.2 2.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3487) bact-PGI_C PF10432.9 gi|327310557|ref|YP_004337454.1| - 5.3e-15 55.8 0.0 4.3e-14 52.8 0.0 2.1 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|327310557|ref|YP_004337454.1| - 2.1e-08 34.1 0.0 4.9e-08 32.9 0.0 1.7 1 1 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|327310557|ref|YP_004337454.1| - 0.00012 22.1 0.1 0.0003 20.8 0.0 1.7 1 1 0 1 1 1 1 SIS domain ResIII PF04851.15 gi|327310558|ref|YP_004337455.1| - 6.9e-16 58.7 0.0 3.4e-15 56.5 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|327310558|ref|YP_004337455.1| - 4.8e-13 49.4 1.7 5.6e-13 49.2 0.1 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|327310558|ref|YP_004337455.1| - 1.9e-10 40.4 0.1 2.9e-10 39.8 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|327310558|ref|YP_004337455.1| - 7.6e-08 32.3 0.1 7.4e-07 29.1 0.0 2.5 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|327310558|ref|YP_004337455.1| - 0.0032 16.2 0.0 0.024 13.4 0.0 2.3 1 1 0 1 1 1 1 SNF2 family N-terminal domain DUF2075 PF09848.9 gi|327310558|ref|YP_004337455.1| - 0.016 14.5 0.0 0.038 13.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|327310558|ref|YP_004337455.1| - 0.036 14.3 0.0 0.11 12.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain Helicase_C_2 PF13307.6 gi|327310558|ref|YP_004337455.1| - 0.09 12.9 2.0 0.24 11.6 0.1 2.2 2 0 0 2 2 2 0 Helicase C-terminal domain DUF2884 PF11101.8 gi|327310558|ref|YP_004337455.1| - 0.11 11.9 0.1 0.22 11.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) UPF0126 PF03458.13 gi|327310559|ref|YP_004337456.1| - 0.016 15.1 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 UPF0126 domain Fer4_7 PF12838.7 gi|327310561|ref|YP_004337458.1| - 3.9e-13 49.8 19.9 1.4e-07 32.0 10.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310561|ref|YP_004337458.1| - 4.1e-11 42.8 5.0 6.2e-11 42.3 5.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|327310561|ref|YP_004337458.1| - 8.3e-10 38.1 17.7 1.9e-09 36.9 3.2 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|327310561|ref|YP_004337458.1| - 1.3e-09 37.7 14.1 2.4e-09 36.8 2.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327310561|ref|YP_004337458.1| - 4.4e-09 36.3 9.1 5.6e-09 36.0 9.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327310561|ref|YP_004337458.1| - 4.1e-08 33.3 20.5 3.8e-05 23.8 10.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327310561|ref|YP_004337458.1| - 5.4e-08 33.7 7.5 0.00013 22.9 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|327310561|ref|YP_004337458.1| - 8.2e-07 28.8 10.6 1.6e-06 27.9 2.8 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|327310561|ref|YP_004337458.1| - 2.4e-05 25.0 2.4 2.4e-05 25.0 2.4 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|327310561|ref|YP_004337458.1| - 4.3e-05 23.7 11.4 0.00012 22.3 1.0 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_17 PF13534.6 gi|327310561|ref|YP_004337458.1| - 0.0012 19.4 8.1 0.055 14.0 2.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|327310561|ref|YP_004337458.1| - 0.0012 19.6 17.2 0.01 16.7 5.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|327310561|ref|YP_004337458.1| - 0.0018 18.7 3.3 0.0018 18.7 3.3 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|327310561|ref|YP_004337458.1| - 0.0031 17.9 10.5 0.059 13.8 2.6 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain DnaB_2 PF07261.11 gi|327310561|ref|YP_004337458.1| - 0.031 14.0 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Replication initiation and membrane attachment Fer4_22 PF17179.4 gi|327310561|ref|YP_004337458.1| - 0.037 14.9 4.3 0.18 12.6 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|327310561|ref|YP_004337458.1| - 0.28 11.4 9.9 1.1 9.4 7.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain SIR2 PF02146.17 gi|327310562|ref|YP_004337459.1| - 2.7e-51 174.0 0.0 3.3e-51 173.7 0.0 1.1 1 0 0 1 1 1 1 Sir2 family zinc_ribbon_4 PF13717.6 gi|327310562|ref|YP_004337459.1| - 0.012 15.5 0.3 0.024 14.5 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2_11 PF16622.5 gi|327310562|ref|YP_004337459.1| - 0.013 15.2 2.1 0.82 9.5 0.2 2.4 2 0 0 2 2 2 0 zinc-finger C2H2-type TPP_enzyme_M PF00205.22 gi|327310562|ref|YP_004337459.1| - 0.017 14.9 0.0 0.22 11.3 0.0 2.2 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain zf-C2H2_3 PF13878.6 gi|327310562|ref|YP_004337459.1| - 0.023 14.5 2.4 0.086 12.7 0.3 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Methyltransf_13 PF08421.11 gi|327310562|ref|YP_004337459.1| - 0.068 13.4 0.1 2.2 8.6 0.0 2.3 2 0 0 2 2 2 0 Putative zinc binding domain zinc_ribbon_15 PF17032.5 gi|327310562|ref|YP_004337459.1| - 0.13 13.1 0.0 0.23 12.3 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon family PikAIV_N PF18605.1 gi|327310562|ref|YP_004337459.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain DUF309 PF03745.14 gi|327310563|ref|YP_004337460.1| - 1.7e-13 50.0 0.1 3e-13 49.3 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Cas_Cas02710 PF09670.10 gi|327310563|ref|YP_004337460.1| - 0.1 11.4 0.0 0.11 11.2 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) Vir_act_alpha_C PF10400.9 gi|327310564|ref|YP_004337461.1| - 0.0046 17.6 2.2 0.012 16.3 0.4 1.9 1 1 1 2 2 2 1 Virulence activator alpha C-term HTH_33 PF13592.6 gi|327310565|ref|YP_004337462.1| - 0.076 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix PAPS_reduct PF01507.19 gi|327310568|ref|YP_004337465.1| - 3.4e-43 147.7 0.0 5.8e-43 146.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_21 PF14697.6 gi|327310568|ref|YP_004337465.1| - 1.9e-06 27.9 6.7 1.9e-06 27.9 6.7 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327310568|ref|YP_004337465.1| - 4.1e-06 26.6 12.0 8.7e-05 22.4 1.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327310568|ref|YP_004337465.1| - 4.5e-06 27.1 8.1 1.2e-05 25.8 8.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|327310568|ref|YP_004337465.1| - 4.9e-06 26.1 15.0 1.1e-05 25.1 2.2 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|327310568|ref|YP_004337465.1| - 1.7e-05 24.8 11.6 0.0012 18.9 1.5 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327310568|ref|YP_004337465.1| - 4.3e-05 23.3 1.6 4.3e-05 23.3 1.6 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|327310568|ref|YP_004337465.1| - 0.00013 22.1 8.2 0.00013 22.1 8.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327310568|ref|YP_004337465.1| - 0.00045 21.1 11.0 0.0024 18.8 0.3 2.9 2 1 2 4 4 4 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|327310568|ref|YP_004337465.1| - 0.0064 16.9 6.3 0.12 12.9 0.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310568|ref|YP_004337465.1| - 0.031 14.8 7.4 0.62 10.6 1.0 2.7 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|327310568|ref|YP_004337465.1| - 0.045 14.3 1.0 0.045 14.3 1.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|327310568|ref|YP_004337465.1| - 0.16 12.2 3.2 0.4 10.9 3.2 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|327310568|ref|YP_004337465.1| - 1.7 9.5 5.8 0.27 12.0 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain NTP_transferase PF00483.23 gi|327310569|ref|YP_004337466.1| - 1.8e-33 116.1 0.0 2.2e-33 115.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|327310569|ref|YP_004337466.1| - 4.6e-13 49.8 0.1 5.1e-13 49.7 0.1 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|327310569|ref|YP_004337466.1| - 0.0054 16.5 0.0 0.015 15.1 0.0 1.7 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Cadherin_4 PF17803.1 gi|327310569|ref|YP_004337466.1| - 0.27 11.9 1.6 0.43 11.3 1.6 1.2 1 0 0 1 1 1 0 Bacterial cadherin-like domain tRNA-synt_1c PF00749.21 gi|327310570|ref|YP_004337467.1| - 2.3e-73 246.8 0.0 4e-73 246.1 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|327310570|ref|YP_004337467.1| - 7.5e-23 81.3 0.0 1.6e-22 80.2 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF354 PF04007.12 gi|327310571|ref|YP_004337468.1| - 2.9e-38 131.8 0.0 3.5e-38 131.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) tRNA-synt_2 PF00152.20 gi|327310573|ref|YP_004337470.1| - 4.7e-88 295.3 0.0 5.7e-88 295.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|327310573|ref|YP_004337470.1| - 4.4e-13 49.0 0.1 1.1e-12 47.8 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|327310573|ref|YP_004337470.1| - 0.0088 15.6 0.6 0.16 11.4 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) TssO PF17561.2 gi|327310574|ref|YP_004337471.1| - 0.079 13.1 0.1 0.1 12.7 0.1 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssO FixH PF05751.11 gi|327310574|ref|YP_004337471.1| - 0.12 12.4 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 FixH Flp_Fap PF04964.14 gi|327310574|ref|YP_004337471.1| - 0.14 12.0 1.3 0.24 11.3 1.3 1.3 1 0 0 1 1 1 0 Flp/Fap pilin component NAD_binding_2 PF03446.15 gi|327310575|ref|YP_004337472.1| - 2.1e-18 67.0 0.6 6e-18 65.5 0.6 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|327310575|ref|YP_004337472.1| - 7.5e-08 32.7 0.0 1.8e-07 31.4 0.0 1.7 1 1 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|327310575|ref|YP_004337472.1| - 2.7e-05 24.7 0.0 0.00016 22.1 0.0 2.3 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|327310575|ref|YP_004337472.1| - 3.2e-05 23.4 0.0 6.2e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|327310575|ref|YP_004337472.1| - 0.0025 17.7 0.0 0.0039 17.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|327310575|ref|YP_004337472.1| - 0.0097 15.2 0.8 0.04 13.2 0.7 2.0 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|327310575|ref|YP_004337472.1| - 0.02 14.8 0.0 0.037 14.0 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YceG PF02618.16 gi|327310575|ref|YP_004337472.1| - 0.046 13.3 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 YceG-like family Shikimate_DH PF01488.20 gi|327310575|ref|YP_004337472.1| - 0.073 13.1 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|327310575|ref|YP_004337472.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Sua5_yciO_yrdC PF01300.18 gi|327310576|ref|YP_004337473.1| - 1.8e-59 200.3 0.0 2.5e-59 199.8 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|327310576|ref|YP_004337473.1| - 1.6e-27 96.7 0.0 2.8e-27 95.9 0.0 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Methyltransf_25 PF13649.6 gi|327310577|ref|YP_004337474.1| - 1.1e-06 29.2 0.0 2.2e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327310577|ref|YP_004337474.1| - 0.00026 21.6 0.0 0.00053 20.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain DUF3565 PF12088.8 gi|327310577|ref|YP_004337474.1| - 0.00082 19.3 0.4 0.0017 18.3 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3565) Glyco_hydro_12 PF01670.16 gi|327310577|ref|YP_004337474.1| - 0.0039 17.2 0.0 0.0061 16.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 Methyltransf_23 PF13489.6 gi|327310577|ref|YP_004337474.1| - 0.0041 17.0 0.0 0.006 16.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|327310577|ref|YP_004337474.1| - 0.024 13.9 0.0 0.084 12.1 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|327310577|ref|YP_004337474.1| - 0.036 13.9 0.0 0.066 13.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Pribosyltran_N PF13793.6 gi|327310578|ref|YP_004337475.1| - 2.1e-20 72.8 0.0 7e-19 67.9 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|327310578|ref|YP_004337475.1| - 5.6e-15 55.2 0.0 2.1e-14 53.3 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|327310578|ref|YP_004337475.1| - 7.8e-08 32.6 0.1 1.9e-07 31.3 0.0 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.6 gi|327310578|ref|YP_004337475.1| - 0.006 16.1 0.0 0.0089 15.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|327310578|ref|YP_004337475.1| - 0.028 13.9 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Hist_deacetyl PF00850.19 gi|327310579|ref|YP_004337476.1| - 1.4e-65 221.8 0.0 1.7e-65 221.5 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain Creatininase PF02633.14 gi|327310581|ref|YP_004337478.1| - 1.6e-35 122.8 0.0 1.9e-35 122.5 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase SoPB_HTH PF18090.1 gi|327310581|ref|YP_004337478.1| - 0.059 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Centromere-binding protein HTH domain GCH_III PF05165.12 gi|327310582|ref|YP_004337479.1| - 1.3e-28 99.9 0.0 8.7e-14 51.4 0.0 2.1 1 1 1 2 2 2 2 GTP cyclohydrolase III RibD_C PF01872.17 gi|327310583|ref|YP_004337480.1| - 4.6e-52 176.8 0.0 5.1e-52 176.6 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PALP PF00291.25 gi|327310583|ref|YP_004337480.1| - 0.018 14.5 0.0 0.038 13.4 0.0 1.5 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme DHBP_synthase PF00926.19 gi|327310584|ref|YP_004337481.1| - 3.5e-43 147.4 0.0 4.1e-43 147.2 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CxxCxxCC PF03692.15 gi|327310585|ref|YP_004337482.1| - 4.4e-18 65.8 0.9 6.6e-18 65.2 0.9 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain 2-Hacid_dh_C PF02826.19 gi|327310586|ref|YP_004337483.1| - 9.1e-63 210.8 0.0 1.5e-62 210.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|327310586|ref|YP_004337483.1| - 7.7e-32 109.8 0.0 9.4e-32 109.5 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|327310586|ref|YP_004337483.1| - 3.4e-07 30.6 0.0 9e-07 29.2 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|327310586|ref|YP_004337483.1| - 4.2e-05 24.0 0.0 0.00017 22.1 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|327310586|ref|YP_004337483.1| - 0.00098 19.2 0.0 0.002 18.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|327310586|ref|YP_004337483.1| - 0.0026 18.2 0.0 0.0058 17.1 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.12 gi|327310586|ref|YP_004337483.1| - 0.0053 16.4 0.0 0.027 14.0 0.0 2.0 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|327310586|ref|YP_004337483.1| - 0.0066 16.5 0.0 0.42 10.7 0.0 2.4 2 1 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|327310586|ref|YP_004337483.1| - 0.0071 16.3 0.3 0.028 14.4 0.1 2.1 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|327310586|ref|YP_004337483.1| - 0.015 15.6 0.2 3.3 8.0 0.0 2.6 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.16 gi|327310586|ref|YP_004337483.1| - 0.026 14.2 0.2 0.045 13.4 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrmO PF01980.16 gi|327310587|ref|YP_004337484.1| - 2.7e-29 101.8 0.0 3.5e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF4382 PF14321.6 gi|327310588|ref|YP_004337485.1| - 1.3e-09 38.5 0.0 1.4e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) LysE PF01810.18 gi|327310589|ref|YP_004337486.1| - 3.1e-15 56.2 12.3 3.6e-15 55.9 12.3 1.0 1 0 0 1 1 1 1 LysE type translocator NUDIX PF00293.28 gi|327310590|ref|YP_004337487.1| - 9e-14 51.6 1.1 1.4e-13 51.1 1.1 1.2 1 1 0 1 1 1 1 NUDIX domain TauE PF01925.19 gi|327310591|ref|YP_004337488.1| - 0.0005 19.8 1.4 0.00054 19.7 1.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE eIF-5_eIF-2B PF01873.17 gi|327310594|ref|YP_004337491.1| - 6.6e-31 106.6 0.0 7.8e-31 106.4 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|327310594|ref|YP_004337491.1| - 0.00012 21.5 0.7 0.00019 20.9 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|327310594|ref|YP_004337491.1| - 0.00042 20.6 0.5 0.00075 19.8 0.5 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-RRN7 PF11781.8 gi|327310594|ref|YP_004337491.1| - 0.013 15.2 0.5 5.3 6.8 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|327310594|ref|YP_004337491.1| - 0.013 15.6 0.0 5.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|327310594|ref|YP_004337491.1| - 0.019 14.8 2.0 0.27 11.2 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|327310594|ref|YP_004337491.1| - 0.022 14.2 0.8 1.9 8.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|327310594|ref|YP_004337491.1| - 0.028 14.4 0.1 0.051 13.6 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin_2 PF18073.1 gi|327310594|ref|YP_004337491.1| - 0.049 13.4 0.1 10 6.0 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_S27e PF01667.17 gi|327310594|ref|YP_004337491.1| - 0.076 12.7 0.3 0.12 12.2 0.3 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 OrfB_Zn_ribbon PF07282.11 gi|327310594|ref|YP_004337491.1| - 0.1 12.5 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TackOD1 PF18551.1 gi|327310594|ref|YP_004337491.1| - 0.12 12.0 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF2387 PF09526.10 gi|327310594|ref|YP_004337491.1| - 0.12 12.5 0.4 0.24 11.6 0.4 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) NOB1_Zn_bind PF08772.11 gi|327310594|ref|YP_004337491.1| - 0.13 12.4 1.4 0.76 10.0 0.2 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Mito_fiss_Elm1 PF06258.11 gi|327310594|ref|YP_004337491.1| - 0.15 11.2 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial fission ELM1 zf-NADH-PPase PF09297.11 gi|327310594|ref|YP_004337491.1| - 0.15 11.8 2.0 0.9 9.3 2.0 2.0 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|327310594|ref|YP_004337491.1| - 0.16 11.7 0.4 10 6.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1610 PF07754.11 gi|327310594|ref|YP_004337491.1| - 3.2 7.8 5.4 23 5.1 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Nudix_N_2 PF14803.6 gi|327310594|ref|YP_004337491.1| - 4.7 7.2 5.9 82 3.2 5.9 2.3 1 1 0 1 1 1 0 Nudix N-terminal Thiolase_N PF00108.23 gi|327310595|ref|YP_004337492.1| - 1.4e-67 227.9 0.0 1.9e-67 227.4 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|327310595|ref|YP_004337492.1| - 1.1e-47 160.7 0.6 2.8e-47 159.4 0.2 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|327310595|ref|YP_004337492.1| - 6.3e-07 29.2 0.3 5.8e-06 26.1 0.0 2.6 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|327310595|ref|YP_004337492.1| - 0.039 14.1 0.0 1.2 9.4 0.0 2.8 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SpoVAD PF07451.11 gi|327310595|ref|YP_004337492.1| - 0.095 11.4 0.0 0.26 10.0 0.0 1.6 2 0 0 2 2 2 0 Stage V sporulation protein AD (SpoVAD) ECH_1 PF00378.20 gi|327310596|ref|YP_004337493.1| - 1.4e-69 234.2 0.0 2.2e-69 233.6 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|327310596|ref|YP_004337493.1| - 4.6e-59 199.3 0.3 7.2e-59 198.7 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|327310596|ref|YP_004337493.1| - 1.6e-50 169.7 0.1 4.4e-25 88.1 0.0 3.0 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|327310596|ref|YP_004337493.1| - 2.2e-39 135.9 0.0 2.1e-35 122.8 0.0 2.6 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase adh_short_C2 PF13561.6 gi|327310596|ref|YP_004337493.1| - 0.051 13.1 2.9 0.11 12.1 0.2 2.5 3 0 0 3 3 3 0 Enoyl-(Acyl carrier protein) reductase CbiA PF01656.23 gi|327310596|ref|YP_004337493.1| - 0.052 13.6 0.0 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Peptidase_M42 PF05343.14 gi|327310597|ref|YP_004337494.1| - 3.2e-105 351.3 0.1 3.7e-105 351.1 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|327310597|ref|YP_004337494.1| - 2.5e-12 46.9 0.5 4.4e-12 46.1 0.5 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|327310597|ref|YP_004337494.1| - 1.1e-05 25.2 0.2 0.00024 20.9 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 AMP-binding PF00501.28 gi|327310598|ref|YP_004337495.1| - 1.6e-78 264.2 0.0 2e-78 263.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|327310598|ref|YP_004337495.1| - 1.6e-21 77.1 0.0 1.5e-20 73.9 0.0 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Aldo_ket_red PF00248.21 gi|327310599|ref|YP_004337496.1| - 9.6e-62 208.8 0.0 1.1e-61 208.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family AMP-binding PF00501.28 gi|327310600|ref|YP_004337497.1| - 1.6e-110 369.6 0.0 2e-110 369.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|327310600|ref|YP_004337497.1| - 2.9e-22 79.4 1.0 1.5e-21 77.1 0.1 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF1967 PF09269.11 gi|327310600|ref|YP_004337497.1| - 0.064 13.2 0.0 0.25 11.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) Acyl-CoA_dh_1 PF00441.24 gi|327310601|ref|YP_004337498.1| - 1.4e-43 148.7 4.2 1.4e-43 148.7 4.2 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|327310601|ref|YP_004337498.1| - 6.4e-36 123.4 0.3 1.5e-35 122.2 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|327310601|ref|YP_004337498.1| - 4.1e-27 94.2 0.0 7.8e-27 93.3 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|327310601|ref|YP_004337498.1| - 7.3e-22 78.1 1.3 1.1e-21 77.5 1.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Thiolase_N PF00108.23 gi|327310602|ref|YP_004337499.1| - 1.6e-26 93.3 0.0 7.4e-26 91.1 0.0 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|327310602|ref|YP_004337499.1| - 1.9e-09 37.2 0.2 3.9e-08 33.0 0.1 2.9 2 1 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|327310602|ref|YP_004337499.1| - 7.1e-05 22.5 2.2 7.1e-05 22.5 2.2 3.0 3 1 1 4 4 4 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|327310602|ref|YP_004337499.1| - 0.002 17.9 0.1 0.025 14.4 0.1 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HSP70 PF00012.20 gi|327310602|ref|YP_004337499.1| - 0.051 11.8 0.0 0.071 11.3 0.0 1.1 1 0 0 1 1 1 0 Hsp70 protein OB_aCoA_assoc PF01796.17 gi|327310603|ref|YP_004337500.1| - 7.2e-17 61.1 0.2 1.4e-16 60.2 0.2 1.5 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|327310603|ref|YP_004337500.1| - 6.4e-10 38.7 1.1 6.4e-10 38.7 1.1 2.4 3 1 1 4 4 4 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|327310603|ref|YP_004337500.1| - 0.0093 16.0 0.0 0.017 15.1 0.0 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|327310603|ref|YP_004337500.1| - 0.054 13.2 0.1 0.076 12.7 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Ribosomal_L37e PF01907.19 gi|327310603|ref|YP_004337500.1| - 0.1 12.7 0.2 0.2 11.9 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Rubredoxin_2 PF18073.1 gi|327310603|ref|YP_004337500.1| - 0.18 11.6 1.3 0.34 10.7 1.3 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain Meth_synt_2 PF01717.18 gi|327310604|ref|YP_004337501.1| - 1.4e-34 119.8 0.0 1.7e-20 73.6 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|327310604|ref|YP_004337501.1| - 0.024 14.2 0.1 0.13 11.7 0.0 2.0 2 0 0 2 2 2 0 Cobalamin-independent synthase, N-terminal domain DUF262 PF03235.14 gi|327310604|ref|YP_004337501.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF262 PaREP1 PF05942.11 gi|327310605|ref|YP_004337502.1| - 9.2e-27 93.3 1.8 1.1e-26 93.0 1.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MarC PF01914.17 gi|327310607|ref|YP_004337504.1| - 2.8e-32 111.7 12.5 3.7e-32 111.4 12.5 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Cren7 PF11520.8 gi|327310608|ref|YP_004337505.1| - 1e-16 60.6 3.8 1.1e-16 60.5 3.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 CcdA PF07362.12 gi|327310609|ref|YP_004337506.1| - 0.045 14.2 1.2 0.06 13.8 1.2 1.3 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA PIN PF01850.21 gi|327310610|ref|YP_004337507.1| - 1.4e-14 54.7 3.2 1.6e-14 54.5 3.2 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|327310610|ref|YP_004337507.1| - 0.013 15.7 0.1 0.016 15.5 0.1 1.2 1 0 0 1 1 1 0 PIN domain Cyt_bd_oxida_I PF01654.17 gi|327310611|ref|YP_004337508.1| - 1.4e-07 30.5 22.6 1e-06 27.6 8.2 2.8 1 1 0 2 2 2 2 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_I PF01654.17 gi|327310612|ref|YP_004337509.1| - 2.1e-75 253.9 30.7 3.8e-75 253.1 30.7 1.3 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I SprB PF13573.6 gi|327310612|ref|YP_004337509.1| - 0.16 11.8 0.4 0.3 10.9 0.4 1.5 1 0 0 1 1 1 0 SprB repeat TrmB PF01978.19 gi|327310613|ref|YP_004337510.1| - 2.4e-05 24.1 0.0 4.2e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|327310613|ref|YP_004337510.1| - 0.0011 18.9 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|327310613|ref|YP_004337510.1| - 0.0018 18.1 0.4 0.019 14.8 0.1 2.2 2 0 0 2 2 2 1 MarR family FtsK_gamma PF09397.10 gi|327310613|ref|YP_004337510.1| - 0.033 14.0 0.1 0.055 13.3 0.1 1.3 1 0 0 1 1 1 0 Ftsk gamma domain Metallophos_2 PF12850.7 gi|327310614|ref|YP_004337511.1| - 8.3e-30 104.2 0.1 1e-29 103.8 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|327310614|ref|YP_004337511.1| - 1.2e-07 32.5 0.2 3.6e-05 24.4 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase ATP-sulfurylase PF01747.17 gi|327310617|ref|YP_004337514.1| - 3.4e-71 239.1 0.0 5e-71 238.5 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|327310617|ref|YP_004337514.1| - 8.2e-38 129.6 0.0 2.2e-37 128.2 0.0 1.6 2 0 0 2 2 2 1 PUA-like domain DUF309 PF03745.14 gi|327310617|ref|YP_004337514.1| - 0.15 11.8 0.3 0.64 9.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF309) APS-reductase_C PF12139.8 gi|327310619|ref|YP_004337516.1| - 1.1e-24 86.4 0.0 1.4e-24 86.1 0.0 1.1 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4 PF00037.27 gi|327310619|ref|YP_004337516.1| - 1.7e-08 33.9 14.0 2.8e-05 23.7 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|327310619|ref|YP_004337516.1| - 1.9e-08 34.3 22.8 9e-06 25.7 14.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327310619|ref|YP_004337516.1| - 2.7e-08 33.9 11.8 4.1e-08 33.2 11.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327310619|ref|YP_004337516.1| - 4e-08 33.7 12.9 7.1e-08 32.9 12.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327310619|ref|YP_004337516.1| - 1e-07 31.7 15.7 8.3e-05 22.5 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327310619|ref|YP_004337516.1| - 1.3e-07 32.4 7.1 0.00088 20.2 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|327310619|ref|YP_004337516.1| - 2.5e-06 27.3 14.3 0.002 18.1 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|327310619|ref|YP_004337516.1| - 3.3e-06 27.2 9.5 0.00037 20.8 2.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327310619|ref|YP_004337516.1| - 1.8e-05 24.8 7.0 0.018 15.2 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310619|ref|YP_004337516.1| - 0.0024 18.4 14.5 0.96 10.0 14.9 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|327310619|ref|YP_004337516.1| - 0.012 16.5 16.4 0.074 14.0 3.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|327310619|ref|YP_004337516.1| - 0.021 15.0 9.7 0.039 14.2 0.8 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|327310619|ref|YP_004337516.1| - 0.025 15.0 13.9 0.65 10.5 14.0 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|327310619|ref|YP_004337516.1| - 0.085 13.7 7.5 0.31 11.9 1.7 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|327310619|ref|YP_004337516.1| - 0.22 12.1 12.7 1.3 9.6 2.4 2.4 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|327310619|ref|YP_004337516.1| - 0.44 11.3 7.2 3.5 8.4 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_2 PF00890.24 gi|327310620|ref|YP_004337517.1| - 1.9e-11 43.7 0.2 6.9e-11 41.9 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|327310620|ref|YP_004337517.1| - 8.9e-07 28.8 0.2 2.5e-06 27.4 0.2 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|327310620|ref|YP_004337517.1| - 0.0015 18.6 0.0 0.0029 17.6 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|327310620|ref|YP_004337517.1| - 0.0041 16.4 0.0 0.0081 15.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|327310620|ref|YP_004337517.1| - 0.0049 16.0 4.8 0.46 9.5 0.9 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|327310620|ref|YP_004337517.1| - 0.19 10.5 0.3 0.28 10.0 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase HI0933_like PF03486.14 gi|327310620|ref|YP_004337517.1| - 0.58 8.8 1.2 2.4 6.8 0.6 1.9 2 0 0 2 2 2 0 HI0933-like protein CLP1_P PF16575.5 gi|327310621|ref|YP_004337518.1| - 4.7e-27 95.0 0.1 2.9e-25 89.1 0.0 2.0 2 0 0 2 2 2 2 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_29 PF13555.6 gi|327310621|ref|YP_004337518.1| - 0.047 13.4 0.0 0.094 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain TusA PF01206.17 gi|327310622|ref|YP_004337519.1| - 6.4e-06 25.9 0.0 7.3e-06 25.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE PF02635.15 gi|327310623|ref|YP_004337520.1| - 2e-07 31.3 0.0 2.5e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|327310623|ref|YP_004337520.1| - 2.2e-06 27.7 0.0 0.0004 20.3 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family RtcB PF01139.17 gi|327310624|ref|YP_004337521.1| - 7.2e-162 539.3 0.0 1.1e-161 538.7 0.0 1.2 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Virulence_fact PF13769.6 gi|327310624|ref|YP_004337521.1| - 0.15 12.3 0.4 0.57 10.4 0.1 2.1 1 1 1 2 2 2 0 Virulence factor DUF5617 PF18493.1 gi|327310624|ref|YP_004337521.1| - 0.18 11.9 0.1 0.4 10.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5617) CorA PF01544.18 gi|327310625|ref|YP_004337522.1| - 2.9e-20 72.8 0.1 3.8e-20 72.4 0.1 1.2 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF5392 PF17370.2 gi|327310625|ref|YP_004337522.1| - 0.012 15.7 1.5 0.023 14.8 1.5 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5392) HTH_33 PF13592.6 gi|327310625|ref|YP_004337522.1| - 0.15 11.7 0.5 0.32 10.7 0.5 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF1512 PF07431.12 gi|327310626|ref|YP_004337523.1| - 1.8e-129 431.8 1.1 2.1e-129 431.6 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) DUF5373 PF17343.2 gi|327310628|ref|YP_004337525.1| - 0.1 12.4 1.7 0.13 12.1 1.7 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5373) HlyD_D4 PF16572.5 gi|327310630|ref|YP_004337527.1| - 0.1 12.5 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Long alpha hairpin domain of cation efflux system protein, CusB NPV_P10 PF05531.12 gi|327310631|ref|YP_004337528.1| - 4.4e-06 27.1 16.0 0.65 10.5 0.5 6.3 2 1 2 5 5 5 2 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|327310631|ref|YP_004337528.1| - 5.6e-06 26.5 18.2 0.086 12.9 3.9 5.4 2 1 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus BLOC1_2 PF10046.9 gi|327310631|ref|YP_004337528.1| - 3.1e-05 24.2 38.7 0.0053 17.0 1.6 6.6 2 1 5 7 7 7 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 FPP PF05911.11 gi|327310631|ref|YP_004337528.1| - 7.6e-05 21.1 28.6 7.6e-05 21.1 28.6 2.1 1 1 1 2 2 2 1 Filament-like plant protein, long coiled-coil DUF948 PF06103.11 gi|327310631|ref|YP_004337528.1| - 0.00033 20.9 14.9 0.62 10.4 0.9 4.8 3 1 2 5 5 4 2 Bacterial protein of unknown function (DUF948) Cob_adeno_trans PF01923.18 gi|327310631|ref|YP_004337528.1| - 0.00052 20.2 1.1 0.00052 20.2 1.1 4.7 1 1 1 3 3 2 1 Cobalamin adenosyltransferase HsbA PF12296.8 gi|327310631|ref|YP_004337528.1| - 0.00065 20.1 6.4 0.091 13.2 0.0 3.1 2 1 1 3 3 2 1 Hydrophobic surface binding protein A IFT57 PF10498.9 gi|327310631|ref|YP_004337528.1| - 0.0012 17.9 10.1 0.0012 17.9 10.1 3.7 1 1 2 3 3 3 1 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|327310631|ref|YP_004337528.1| - 0.006 15.5 58.3 0.017 14.0 28.9 4.3 1 1 3 5 5 5 3 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|327310631|ref|YP_004337528.1| - 0.0085 16.3 28.4 0.24 11.6 5.1 4.7 1 1 3 4 4 4 2 Fibrinogen alpha/beta chain family AAA_13 PF13166.6 gi|327310631|ref|YP_004337528.1| - 0.015 14.0 34.8 0.099 11.3 1.8 3.1 1 1 2 3 3 3 0 AAA domain Mating_N PF12731.7 gi|327310631|ref|YP_004337528.1| - 0.022 14.8 3.2 0.24 11.5 1.1 2.9 2 1 0 2 2 2 0 Mating-type protein beta 1 Sec34 PF04136.15 gi|327310631|ref|YP_004337528.1| - 0.053 13.4 22.1 0.73 9.7 1.2 5.2 1 1 4 5 5 5 0 Sec34-like family OmpH PF03938.14 gi|327310631|ref|YP_004337528.1| - 0.056 13.8 52.2 0.14 12.5 5.3 4.7 1 1 3 4 4 4 0 Outer membrane protein (OmpH-like) Med9 PF07544.13 gi|327310631|ref|YP_004337528.1| - 0.13 12.4 0.2 0.13 12.4 0.2 7.0 2 1 3 6 6 4 0 RNA polymerase II transcription mediator complex subunit 9 V_ATPase_I PF01496.19 gi|327310631|ref|YP_004337528.1| - 0.15 10.0 25.1 0.31 8.9 0.0 3.1 1 1 3 4 4 4 0 V-type ATPase 116kDa subunit family Mce4_CUP1 PF11887.8 gi|327310631|ref|YP_004337528.1| - 0.16 11.4 8.6 4.6 6.6 4.1 3.5 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF2203 PF09969.9 gi|327310631|ref|YP_004337528.1| - 0.23 12.2 41.3 0.52 11.0 3.7 5.5 1 1 5 6 6 6 0 Uncharacterized conserved protein (DUF2203) DUF1664 PF07889.12 gi|327310631|ref|YP_004337528.1| - 0.3 11.1 29.9 1.1 9.3 0.5 5.7 1 1 4 6 6 6 0 Protein of unknown function (DUF1664) UPF0242 PF06785.11 gi|327310631|ref|YP_004337528.1| - 0.55 10.3 45.3 0.2 11.7 21.4 3.4 2 1 2 4 4 3 0 Uncharacterised protein family (UPF0242) N-terminus MCPsignal PF00015.21 gi|327310631|ref|YP_004337528.1| - 0.56 10.0 13.9 1.8 8.4 1.2 4.1 1 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FAA_hydro_N_2 PF18288.1 gi|327310631|ref|YP_004337528.1| - 0.7 10.4 10.7 1.1 9.7 0.2 4.6 1 1 5 6 6 6 0 Fumarylacetoacetase N-terminal domain 2 Exonuc_VII_L PF02601.15 gi|327310631|ref|YP_004337528.1| - 0.97 8.9 38.6 4.4 6.8 10.9 3.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit APG17 PF04108.12 gi|327310631|ref|YP_004337528.1| - 2.9 6.9 34.6 5 6.1 16.3 4.0 1 1 1 2 2 2 0 Autophagy protein Apg17 TMPIT PF07851.13 gi|327310631|ref|YP_004337528.1| - 2.9 7.0 26.7 5.1 6.2 0.8 3.8 1 1 2 3 3 3 0 TMPIT-like protein DUF3552 PF12072.8 gi|327310631|ref|YP_004337528.1| - 3.1 7.1 66.3 1.4 8.3 6.9 5.1 1 1 4 5 5 5 0 Domain of unknown function (DUF3552) ATG16 PF08614.11 gi|327310631|ref|YP_004337528.1| - 3.5 7.8 64.8 0.11 12.7 10.9 4.5 2 1 2 5 5 4 0 Autophagy protein 16 (ATG16) EzrA PF06160.12 gi|327310631|ref|YP_004337528.1| - 3.6 5.7 41.6 62 1.6 18.7 4.1 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Jnk-SapK_ap_N PF09744.9 gi|327310631|ref|YP_004337528.1| - 4.1 7.6 52.4 6 7.1 3.0 4.8 1 1 3 4 4 4 0 JNK_SAPK-associated protein-1 DUF2935 PF11155.8 gi|327310631|ref|YP_004337528.1| - 4.4 7.7 11.8 43 4.5 3.8 4.0 1 1 2 3 3 3 0 Domain of unknown function (DUF2935) DUF4200 PF13863.6 gi|327310631|ref|YP_004337528.1| - 6.5 7.2 68.3 3.7 8.0 6.0 5.8 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) DUF812 PF05667.11 gi|327310631|ref|YP_004337528.1| - 6.8 5.4 42.1 2.1 7.1 37.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Syntaxin-6_N PF09177.11 gi|327310631|ref|YP_004337528.1| - 6.8 7.3 37.5 1.1e+02 3.4 9.6 5.9 2 1 2 4 4 3 0 Syntaxin 6, N-terminal DUF3450 PF11932.8 gi|327310631|ref|YP_004337528.1| - 6.9 5.9 49.4 0.2 11.0 4.5 5.1 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) WXG100 PF06013.12 gi|327310631|ref|YP_004337528.1| - 7.2 6.9 26.1 38 4.6 0.1 7.5 4 1 5 10 10 9 0 Proteins of 100 residues with WXG Nsp1_C PF05064.13 gi|327310631|ref|YP_004337528.1| - 7.2 6.4 32.7 0.12 12.2 0.8 5.6 2 1 3 6 6 6 0 Nsp1-like C-terminal region Prominin PF05478.11 gi|327310631|ref|YP_004337528.1| - 7.6 4.3 22.4 0.42 8.5 2.3 3.0 1 1 2 3 3 3 0 Prominin Tweety PF04906.13 gi|327310631|ref|YP_004337528.1| - 8.3 5.0 17.1 1.9 7.1 0.4 4.1 1 1 2 4 4 4 0 Tweety GAS PF13851.6 gi|327310631|ref|YP_004337528.1| - 9.7 5.5 51.7 4 6.7 4.8 4.3 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding DUF2408 PF10303.9 gi|327310632|ref|YP_004337529.1| - 0.0014 19.2 0.1 0.0017 19.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2408) DUF885 PF05960.11 gi|327310632|ref|YP_004337529.1| - 0.015 14.9 0.7 0.021 14.5 0.5 1.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF885) CAP_N PF01213.19 gi|327310632|ref|YP_004337529.1| - 0.029 13.9 0.1 0.032 13.7 0.1 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal APH_6_hur PF04655.14 gi|327310632|ref|YP_004337529.1| - 0.033 13.6 0.7 0.038 13.4 0.7 1.1 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase CHASE7 PF17151.4 gi|327310632|ref|YP_004337529.1| - 0.056 13.1 0.6 0.17 11.5 0.2 1.7 2 0 0 2 2 2 0 Periplasmic sensor domain UTP15_C PF09384.10 gi|327310632|ref|YP_004337529.1| - 0.069 12.8 1.5 0.29 10.8 0.7 2.0 2 0 0 2 2 2 0 UTP15 C terminal DUF2150 PF09920.9 gi|327310632|ref|YP_004337529.1| - 0.076 13.0 1.0 0.1 12.6 0.5 1.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2150) IL11 PF07400.11 gi|327310632|ref|YP_004337529.1| - 0.084 12.5 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 Interleukin 11 Snapin_Pallidin PF14712.6 gi|327310632|ref|YP_004337529.1| - 0.1 13.0 2.3 3.7 8.0 0.1 2.7 1 1 2 3 3 3 0 Snapin/Pallidin Mad3_BUB1_I_2 PF17014.5 gi|327310632|ref|YP_004337529.1| - 0.13 12.4 0.1 0.22 11.6 0.1 1.4 2 0 0 2 2 2 0 Putative Mad3/BUB1 like region 1 protein DinB_2 PF12867.7 gi|327310632|ref|YP_004337529.1| - 2 8.9 4.8 20 5.7 4.8 2.4 1 1 0 1 1 1 0 DinB superfamily SlyX PF04102.12 gi|327310632|ref|YP_004337529.1| - 3.4 8.3 7.6 0.7 10.5 0.5 2.5 1 1 1 2 2 2 0 SlyX Hexapep PF00132.24 gi|327310633|ref|YP_004337530.1| - 9.7e-28 94.8 28.0 9e-09 34.7 0.4 5.5 3 1 2 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|327310633|ref|YP_004337530.1| - 1e-15 57.2 25.9 7.5e-07 28.8 3.4 6.1 5 1 1 6 6 6 4 Hexapeptide repeat of succinyl-transferase AAA PF00004.29 gi|327310634|ref|YP_004337531.1| - 8.4e-100 330.4 0.0 2.2e-50 170.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|327310634|ref|YP_004337531.1| - 1.2e-34 117.8 1.9 7.3e-18 64.1 0.3 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|327310634|ref|YP_004337531.1| - 1.5e-32 111.6 0.1 2.3e-31 107.8 0.5 2.8 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|327310634|ref|YP_004337531.1| - 7.2e-16 58.3 0.0 9e-08 32.0 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|327310634|ref|YP_004337531.1| - 2.7e-14 53.6 0.0 2.1e-07 31.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|327310634|ref|YP_004337531.1| - 2.7e-13 50.6 0.6 5.9e-06 26.8 0.0 4.1 3 2 1 4 4 4 2 AAA ATPase domain CDC48_2 PF02933.17 gi|327310634|ref|YP_004337531.1| - 5.2e-12 45.4 0.6 1.2e-11 44.2 0.6 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|327310634|ref|YP_004337531.1| - 1.7e-11 44.5 0.2 0.00023 21.4 0.0 4.0 2 2 2 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|327310634|ref|YP_004337531.1| - 1.5e-10 41.2 0.6 0.00053 20.0 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|327310634|ref|YP_004337531.1| - 3.5e-10 40.2 0.0 0.00052 20.2 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|327310634|ref|YP_004337531.1| - 1.3e-09 38.2 0.0 0.00015 21.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|327310634|ref|YP_004337531.1| - 2.8e-09 36.6 0.0 0.00062 19.1 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_24 PF13479.6 gi|327310634|ref|YP_004337531.1| - 2.5e-08 33.9 0.0 0.0058 16.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|327310634|ref|YP_004337531.1| - 3.4e-08 34.1 0.0 0.0044 17.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|327310634|ref|YP_004337531.1| - 7.6e-08 32.3 0.0 0.007 16.1 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein Vps4_C PF09336.10 gi|327310634|ref|YP_004337531.1| - 2.2e-07 30.8 0.7 0.012 15.6 0.0 3.4 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain RNA_helicase PF00910.22 gi|327310634|ref|YP_004337531.1| - 3.1e-07 30.8 0.0 0.025 15.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|327310634|ref|YP_004337531.1| - 8.3e-07 28.6 0.2 0.04 13.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|327310634|ref|YP_004337531.1| - 2.2e-06 27.7 0.0 0.11 12.5 0.0 2.9 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|327310634|ref|YP_004337531.1| - 2.9e-06 27.6 0.0 0.012 15.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|327310634|ref|YP_004337531.1| - 3.5e-06 26.7 1.6 0.28 10.7 0.2 4.0 3 1 1 4 4 3 2 AAA domain Sigma54_activat PF00158.26 gi|327310634|ref|YP_004337531.1| - 9.9e-06 25.4 0.0 0.11 12.2 0.0 3.2 3 1 0 3 3 2 2 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|327310634|ref|YP_004337531.1| - 1.5e-05 25.1 0.2 0.039 13.9 0.1 3.1 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|327310634|ref|YP_004337531.1| - 1.5e-05 25.0 0.1 0.15 12.0 0.0 3.2 4 0 0 4 4 3 2 NACHT domain ATPase PF06745.13 gi|327310634|ref|YP_004337531.1| - 4.7e-05 22.9 0.3 0.32 10.3 0.0 3.5 2 1 1 3 3 3 2 KaiC DUF815 PF05673.13 gi|327310634|ref|YP_004337531.1| - 5.9e-05 22.3 0.0 0.12 11.6 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|327310634|ref|YP_004337531.1| - 9e-05 22.1 0.0 0.2 11.2 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|327310634|ref|YP_004337531.1| - 0.00029 20.7 0.0 1.2 9.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|327310634|ref|YP_004337531.1| - 0.00041 19.6 0.0 1.2 8.3 0.0 3.5 4 0 0 4 4 4 1 NB-ARC domain Zeta_toxin PF06414.12 gi|327310634|ref|YP_004337531.1| - 0.00061 19.1 0.0 0.45 9.8 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin Bac_DnaA PF00308.18 gi|327310634|ref|YP_004337531.1| - 0.00096 19.0 0.0 0.27 11.1 0.0 3.0 3 1 0 3 3 2 1 Bacterial dnaA protein AAA_17 PF13207.6 gi|327310634|ref|YP_004337531.1| - 0.0011 19.4 0.0 3.2 8.2 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|327310634|ref|YP_004337531.1| - 0.0016 18.3 0.0 1.2 8.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|327310634|ref|YP_004337531.1| - 0.0019 18.7 0.0 1.5 9.3 0.0 2.9 2 0 0 2 2 2 1 ABC transporter Parvo_NS1 PF01057.17 gi|327310634|ref|YP_004337531.1| - 0.0026 16.9 0.1 0.26 10.4 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 MazE_antitoxin PF04014.18 gi|327310634|ref|YP_004337531.1| - 0.0032 17.3 2.1 0.01 15.7 0.4 2.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin UFD1 PF03152.14 gi|327310634|ref|YP_004337531.1| - 0.0055 16.2 0.0 0.17 11.3 0.0 2.3 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 PhoH PF02562.16 gi|327310634|ref|YP_004337531.1| - 0.0055 16.2 0.4 0.61 9.5 0.0 2.8 3 0 0 3 3 2 1 PhoH-like protein AAA_30 PF13604.6 gi|327310634|ref|YP_004337531.1| - 0.007 16.1 0.1 1.7 8.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.16 gi|327310634|ref|YP_004337531.1| - 0.007 15.3 0.0 2.4 6.9 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase NTPase_1 PF03266.15 gi|327310634|ref|YP_004337531.1| - 0.0077 16.2 1.4 7.6 6.4 0.0 3.8 3 1 1 4 4 4 0 NTPase AAA_19 PF13245.6 gi|327310634|ref|YP_004337531.1| - 0.01 16.2 0.6 4.8 7.5 0.1 3.1 2 1 0 3 3 3 0 AAA domain Guanylate_kin PF00625.21 gi|327310634|ref|YP_004337531.1| - 0.011 15.4 0.1 28 4.4 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase Sigma54_activ_2 PF14532.6 gi|327310634|ref|YP_004337531.1| - 0.016 15.3 0.0 9.3 6.4 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain TniB PF05621.11 gi|327310634|ref|YP_004337531.1| - 0.016 14.6 0.0 8 5.8 0.0 3.0 3 0 0 3 3 3 0 Bacterial TniB protein IPT PF01745.16 gi|327310634|ref|YP_004337531.1| - 0.019 14.3 0.1 2.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Viral_helicase1 PF01443.18 gi|327310634|ref|YP_004337531.1| - 0.038 13.7 0.0 2.1 8.0 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|327310634|ref|YP_004337531.1| - 0.04 13.1 0.0 0.26 10.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Rad17 PF03215.15 gi|327310634|ref|YP_004337531.1| - 0.041 13.8 0.0 6.7 6.6 0.0 2.5 2 1 0 2 2 2 0 Rad17 P-loop domain DUF1905 PF08922.11 gi|327310634|ref|YP_004337531.1| - 0.073 13.1 0.3 25 5.0 0.0 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) SKI PF01202.22 gi|327310634|ref|YP_004337531.1| - 0.11 12.6 0.0 20 5.3 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase ArsA_HSP20 PF17886.1 gi|327310635|ref|YP_004337532.1| - 7.1e-12 44.7 0.1 1.1e-11 44.2 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|327310635|ref|YP_004337532.1| - 1.2e-10 41.4 2.2 3.6e-09 36.7 2.2 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|327310635|ref|YP_004337532.1| - 0.00034 20.7 0.0 0.0004 20.5 0.0 1.1 1 0 0 1 1 1 1 GvpH CS PF04969.16 gi|327310635|ref|YP_004337532.1| - 0.0055 17.7 0.2 0.0087 17.1 0.2 1.3 1 0 0 1 1 1 1 CS domain DUF2863 PF11062.8 gi|327310636|ref|YP_004337533.1| - 0.078 11.4 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) Gsf2 PF11055.8 gi|327310636|ref|YP_004337533.1| - 0.09 11.5 0.4 0.19 10.5 0.4 1.4 1 0 0 1 1 1 0 Glucose signalling factor 2 PNP_UDP_1 PF01048.20 gi|327310637|ref|YP_004337534.1| - 7.6e-32 110.4 3.4 8.9e-32 110.2 3.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF1272 PF06906.11 gi|327310638|ref|YP_004337535.1| - 0.0091 16.1 0.1 0.02 15.0 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) Furin-like_2 PF15913.5 gi|327310638|ref|YP_004337535.1| - 0.05 13.7 0.0 0.066 13.4 0.0 1.2 1 0 0 1 1 1 0 Furin-like repeat, cysteine-rich HscB_4_cys PF18256.1 gi|327310638|ref|YP_004337535.1| - 0.88 9.4 3.5 0.7 9.7 0.4 2.1 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Lys_export PF03956.13 gi|327310639|ref|YP_004337536.1| - 2.1e-43 148.1 13.9 2.1e-43 148.1 13.9 1.9 2 0 0 2 2 2 1 Lysine exporter LysO Flavoprotein PF02441.19 gi|327310640|ref|YP_004337537.1| - 5.3e-27 94.5 0.0 6.8e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein RHH_1 PF01402.21 gi|327310641|ref|YP_004337538.1| - 2.3e-06 27.3 0.9 9.2e-05 22.2 0.2 2.2 2 0 0 2 2 2 2 Ribbon-helix-helix protein, copG family DUF5388 PF17363.2 gi|327310641|ref|YP_004337538.1| - 0.0025 18.0 0.0 0.0035 17.5 0.0 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5388) RHH_8 PF17723.1 gi|327310641|ref|YP_004337538.1| - 0.011 15.9 0.2 0.013 15.7 0.2 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family SIS PF01380.22 gi|327310642|ref|YP_004337539.1| - 3.1e-15 56.2 0.0 5.3e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|327310642|ref|YP_004337539.1| - 1.2e-11 44.8 3.2 1.5e-06 28.3 2.4 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|327310642|ref|YP_004337539.1| - 0.18 11.6 2.5 7.1 6.4 0.1 2.4 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase AdoMet_dc PF02675.15 gi|327310643|ref|YP_004337540.1| - 5.5e-38 129.5 0.0 6.2e-38 129.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Citrate_synt PF00285.21 gi|327310644|ref|YP_004337541.1| - 7.9e-115 383.8 0.0 9e-115 383.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain QRPTase_C PF01729.19 gi|327310645|ref|YP_004337542.1| - 8.2e-16 58.2 0.0 1.2e-15 57.7 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|327310645|ref|YP_004337542.1| - 3.5e-05 23.8 0.0 6.6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|327310645|ref|YP_004337542.1| - 9.3e-05 22.8 0.0 0.00017 22.0 0.0 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain PDDEXK_10 PF07788.11 gi|327310645|ref|YP_004337542.1| - 0.0023 17.8 0.0 0.096 12.6 0.0 2.4 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily NAPRTase_N PF17767.1 gi|327310645|ref|YP_004337542.1| - 0.0028 18.0 0.0 0.54 10.6 0.0 2.2 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FAD_binding_3 PF01494.19 gi|327310646|ref|YP_004337543.1| - 3.3e-14 52.9 1.6 6.8e-10 38.7 0.0 3.1 2 1 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|327310646|ref|YP_004337543.1| - 9.6e-08 31.8 0.5 1.5e-07 31.1 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|327310646|ref|YP_004337543.1| - 8.7e-06 24.8 0.0 0.015 14.2 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|327310646|ref|YP_004337543.1| - 2.2e-05 23.7 0.8 0.0065 15.6 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|327310646|ref|YP_004337543.1| - 4.5e-05 22.7 0.2 0.00014 21.1 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|327310646|ref|YP_004337543.1| - 0.00011 21.5 0.0 0.00017 20.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327310646|ref|YP_004337543.1| - 0.00022 21.7 0.0 0.00058 20.4 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|327310646|ref|YP_004337543.1| - 0.00024 20.0 0.0 0.00041 19.2 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|327310646|ref|YP_004337543.1| - 0.0012 19.0 0.0 0.0038 17.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|327310646|ref|YP_004337543.1| - 0.0021 17.2 0.0 0.0021 17.2 0.0 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|327310646|ref|YP_004337543.1| - 0.0028 16.9 0.0 0.0056 16.0 0.0 1.5 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.6 gi|327310646|ref|YP_004337543.1| - 0.003 16.9 0.1 0.0045 16.3 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|327310646|ref|YP_004337543.1| - 0.0036 16.9 0.4 0.0074 15.9 0.3 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase XdhC_C PF13478.6 gi|327310646|ref|YP_004337543.1| - 0.028 14.9 0.0 0.16 12.4 0.0 2.2 1 1 0 1 1 1 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.21 gi|327310646|ref|YP_004337543.1| - 0.032 13.5 0.0 0.066 12.5 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FtsX PF02687.21 gi|327310647|ref|YP_004337544.1| - 1.1e-10 41.8 4.7 1.1e-10 41.8 4.7 2.9 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|327310647|ref|YP_004337544.1| - 2.9e-08 34.3 8.4 2.9e-08 34.3 8.4 2.6 3 1 0 3 3 3 1 MacB-like periplasmic core domain DUF2273 PF10031.9 gi|327310647|ref|YP_004337544.1| - 0.061 13.3 0.4 0.061 13.3 0.4 3.2 3 0 0 3 3 3 0 Small integral membrane protein (DUF2273) Pyr_redox_2 PF07992.14 gi|327310648|ref|YP_004337545.1| - 1.8e-09 37.3 0.0 7.9e-08 31.9 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|327310648|ref|YP_004337545.1| - 0.00014 21.9 1.2 0.021 14.8 0.2 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|327310648|ref|YP_004337545.1| - 0.00031 20.9 0.1 0.00063 19.9 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|327310648|ref|YP_004337545.1| - 0.00044 20.0 1.6 0.00058 19.6 0.8 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|327310648|ref|YP_004337545.1| - 0.0059 15.7 0.0 0.0089 15.1 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|327310648|ref|YP_004337545.1| - 0.0081 15.3 0.1 0.011 14.8 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|327310648|ref|YP_004337545.1| - 0.028 15.0 0.5 0.068 13.7 0.3 1.7 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|327310648|ref|YP_004337545.1| - 0.05 12.4 0.3 0.074 11.9 0.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|327310648|ref|YP_004337545.1| - 0.07 12.4 2.3 5.7 6.1 0.4 2.9 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|327310648|ref|YP_004337545.1| - 0.086 11.5 0.1 0.15 10.7 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein NAD_binding_7 PF13241.6 gi|327310648|ref|YP_004337545.1| - 0.1 13.0 0.1 0.23 11.9 0.1 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding GMC_oxred_N PF00732.19 gi|327310648|ref|YP_004337545.1| - 0.19 11.1 0.0 2.9 7.2 0.0 2.0 2 0 0 2 2 2 0 GMC oxidoreductase ApbA PF02558.16 gi|327310648|ref|YP_004337545.1| - 0.19 11.4 0.1 0.4 10.3 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thioredoxin_2 PF13098.6 gi|327310649|ref|YP_004337546.1| - 0.00012 22.5 0.0 0.0011 19.4 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|327310649|ref|YP_004337546.1| - 0.00054 19.8 2.2 0.75 9.5 1.0 2.3 2 1 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|327310649|ref|YP_004337546.1| - 0.00079 19.6 0.0 0.0016 18.6 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin PF00085.20 gi|327310649|ref|YP_004337546.1| - 0.071 13.1 0.0 12 6.0 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin GalP_UDP_transf PF01087.22 gi|327310650|ref|YP_004337547.1| - 9.5e-19 68.5 0.0 1.2e-16 61.7 0.0 2.1 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|327310650|ref|YP_004337547.1| - 1.3e-13 51.0 0.0 3.4e-13 49.6 0.0 1.7 1 1 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DUF4931 PF16285.5 gi|327310650|ref|YP_004337547.1| - 0.025 13.9 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4931) GHMP_kinases_N PF00288.26 gi|327310651|ref|YP_004337548.1| - 5e-13 49.1 0.4 5e-13 49.1 0.4 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|327310651|ref|YP_004337548.1| - 2.4e-10 40.7 0.5 5.8e-10 39.4 0.5 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|327310651|ref|YP_004337548.1| - 2.6e-07 30.1 0.0 5e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature ABC_tran PF00005.27 gi|327310652|ref|YP_004337549.1| - 4e-33 114.8 0.0 5.8e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|327310652|ref|YP_004337549.1| - 1.7e-12 47.9 0.0 6.8e-12 46.0 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|327310652|ref|YP_004337549.1| - 2.6e-08 34.0 0.2 6.2e-05 22.9 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|327310652|ref|YP_004337549.1| - 5.2e-08 33.3 0.5 0.001 19.6 0.0 2.8 2 0 0 2 2 2 2 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|327310652|ref|YP_004337549.1| - 0.0032 17.6 0.4 0.011 15.9 0.4 2.0 1 0 0 1 1 1 1 TOBE domain SbcCD_C PF13558.6 gi|327310652|ref|YP_004337549.1| - 0.0059 16.8 0.1 0.04 14.2 0.1 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit GlcV_C_terminal PF17847.1 gi|327310652|ref|YP_004337549.1| - 0.023 15.2 0.6 0.084 13.3 0.1 2.2 2 1 0 2 2 2 0 Glucose ABC transporter C-terminal domain RsgA_GTPase PF03193.16 gi|327310652|ref|YP_004337549.1| - 0.063 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|327310652|ref|YP_004337549.1| - 0.084 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|327310652|ref|YP_004337549.1| - 0.11 12.4 0.0 0.98 9.3 0.0 2.1 2 0 0 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 gi|327310652|ref|YP_004337549.1| - 0.11 11.8 0.1 0.74 9.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein ABC_ATPase PF09818.9 gi|327310652|ref|YP_004337549.1| - 0.12 11.1 0.1 16 4.1 0.0 2.8 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.6 gi|327310652|ref|YP_004337549.1| - 0.13 12.4 0.0 0.42 10.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|327310652|ref|YP_004337549.1| - 0.18 12.1 0.0 0.82 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|327310652|ref|YP_004337549.1| - 0.18 12.3 0.0 0.37 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain Tricorn_C1 PF14684.6 gi|327310653|ref|YP_004337550.1| - 5e-31 106.6 1.2 9e-31 105.8 1.2 1.5 1 0 0 1 1 1 1 Tricorn protease C1 domain Tricorn_PDZ PF14685.6 gi|327310653|ref|YP_004337550.1| - 3.1e-22 78.3 0.0 6e-22 77.4 0.0 1.5 1 0 0 1 1 1 1 Tricorn protease PDZ domain Peptidase_S41 PF03572.18 gi|327310653|ref|YP_004337550.1| - 2.2e-21 76.1 0.0 6.1e-21 74.7 0.0 1.8 1 1 0 1 1 1 1 Peptidase family S41 PD40 PF07676.12 gi|327310653|ref|YP_004337550.1| - 5.1e-18 64.5 11.7 6.3e-06 26.0 0.2 8.0 8 0 0 8 8 8 4 WD40-like Beta Propeller Repeat ANAPC4_WD40 PF12894.7 gi|327310653|ref|YP_004337550.1| - 3.5e-05 24.0 0.0 0.16 12.3 0.0 3.9 4 0 0 4 4 4 1 Anaphase-promoting complex subunit 4 WD40 domain DPPIV_N PF00930.21 gi|327310653|ref|YP_004337550.1| - 0.0039 16.0 0.0 22 3.7 0.0 4.9 4 2 2 6 6 6 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region PQQ_3 PF13570.6 gi|327310653|ref|YP_004337550.1| - 0.0091 16.5 0.1 0.0091 16.5 0.1 4.7 5 0 0 5 5 5 1 PQQ-like domain WD40 PF00400.32 gi|327310653|ref|YP_004337550.1| - 0.036 14.9 0.1 42 5.2 0.0 4.9 4 1 1 5 5 5 0 WD domain, G-beta repeat Acylphosphatase PF00708.18 gi|327310654|ref|YP_004337551.1| - 1e-25 89.9 0.1 1.2e-25 89.7 0.1 1.1 1 0 0 1 1 1 1 Acylphosphatase Methyltransf_11 PF08241.12 gi|327310655|ref|YP_004337552.1| - 1.4e-18 67.3 0.0 2.1e-18 66.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310655|ref|YP_004337552.1| - 8.5e-16 58.5 0.0 1.3e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327310655|ref|YP_004337552.1| - 1e-13 51.5 0.0 1.3e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327310655|ref|YP_004337552.1| - 1.2e-13 51.6 0.0 2e-13 50.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|327310655|ref|YP_004337552.1| - 4.7e-09 35.9 0.0 6.2e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|327310655|ref|YP_004337552.1| - 4.9e-07 29.7 0.0 7.4e-07 29.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|327310655|ref|YP_004337552.1| - 0.0011 18.8 0.0 0.0017 18.1 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|327310655|ref|YP_004337552.1| - 0.021 14.1 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|327310655|ref|YP_004337552.1| - 0.035 14.1 0.0 0.055 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|327310655|ref|YP_004337552.1| - 0.041 13.9 0.0 0.1 12.6 0.0 1.5 1 1 0 1 1 1 0 Zinc-binding dehydrogenase MTS PF05175.14 gi|327310655|ref|YP_004337552.1| - 0.063 12.8 0.0 0.36 10.4 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase small domain NodS PF05401.11 gi|327310655|ref|YP_004337552.1| - 0.073 12.7 0.0 0.1 12.2 0.0 1.3 1 1 0 1 1 1 0 Nodulation protein S (NodS) TPMT PF05724.11 gi|327310655|ref|YP_004337552.1| - 0.17 11.5 0.0 0.47 10.1 0.0 1.8 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) ATPase PF06745.13 gi|327310656|ref|YP_004337553.1| - 4.7e-12 45.7 0.0 4.3e-08 32.8 0.0 3.2 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|327310656|ref|YP_004337553.1| - 3.9e-08 33.1 1.9 0.0068 16.0 0.0 3.2 2 1 1 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|327310656|ref|YP_004337553.1| - 1.1e-05 25.7 0.0 3.3e-05 24.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|327310656|ref|YP_004337553.1| - 4.3e-05 22.3 0.0 0.0019 16.9 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein AAA PF00004.29 gi|327310656|ref|YP_004337553.1| - 5.3e-05 23.6 0.0 0.00012 22.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|327310656|ref|YP_004337553.1| - 0.00017 22.0 0.0 0.00033 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|327310656|ref|YP_004337553.1| - 0.00044 20.2 0.0 0.00099 19.1 0.0 1.6 1 0 0 1 1 1 1 NACHT domain RecA PF00154.21 gi|327310656|ref|YP_004337553.1| - 0.0016 18.0 0.0 0.02 14.4 0.0 2.4 3 0 0 3 3 3 1 recA bacterial DNA recombination protein AAA_17 PF13207.6 gi|327310656|ref|YP_004337553.1| - 0.0036 17.7 0.0 0.0081 16.6 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_23 PF13476.6 gi|327310656|ref|YP_004337553.1| - 0.011 16.2 0.1 0.026 15.0 0.1 1.5 2 0 0 2 2 1 0 AAA domain AAA_11 PF13086.6 gi|327310656|ref|YP_004337553.1| - 0.017 14.9 0.0 0.037 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|327310656|ref|YP_004337553.1| - 0.017 15.1 0.0 0.055 13.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|327310656|ref|YP_004337553.1| - 0.021 14.6 0.1 1.4 8.6 0.0 2.9 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_30 PF13604.6 gi|327310656|ref|YP_004337553.1| - 0.03 14.0 0.0 0.058 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|327310656|ref|YP_004337553.1| - 0.03 14.1 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|327310656|ref|YP_004337553.1| - 0.032 14.8 0.0 0.069 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|327310656|ref|YP_004337553.1| - 0.042 14.0 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|327310656|ref|YP_004337553.1| - 0.075 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein T2SSE PF00437.20 gi|327310656|ref|YP_004337553.1| - 0.095 11.7 0.0 1.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein RuvB_N PF05496.12 gi|327310656|ref|YP_004337553.1| - 0.12 12.2 0.0 0.43 10.3 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF2299 PF10061.9 gi|327310657|ref|YP_004337554.1| - 1.2e-44 151.4 0.0 1.4e-44 151.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) ADH_N PF08240.12 gi|327310658|ref|YP_004337555.1| - 1.8e-24 85.7 0.0 3e-24 85.0 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|327310658|ref|YP_004337555.1| - 8.2e-14 51.7 0.4 9.8e-13 48.2 0.5 2.5 1 1 1 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|327310658|ref|YP_004337555.1| - 8e-12 45.1 0.1 1.4e-11 44.3 0.1 1.4 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|327310658|ref|YP_004337555.1| - 7.8e-09 36.7 0.1 1.4e-08 35.8 0.1 1.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|327310658|ref|YP_004337555.1| - 0.0033 17.5 0.0 0.0054 16.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TP_methylase PF00590.20 gi|327310658|ref|YP_004337555.1| - 0.0086 16.0 0.4 0.014 15.3 0.4 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NAD_binding_9 PF13454.6 gi|327310659|ref|YP_004337556.1| - 9.4e-06 25.7 0.1 0.052 13.5 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|327310659|ref|YP_004337556.1| - 0.00091 18.5 0.0 0.0021 17.3 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|327310659|ref|YP_004337556.1| - 0.013 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein RHH_1 PF01402.21 gi|327310660|ref|YP_004337557.1| - 5.5e-10 38.8 1.3 6.4e-10 38.6 1.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|327310660|ref|YP_004337557.1| - 0.0018 18.4 0.0 0.0019 18.4 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_3 PF12651.7 gi|327310660|ref|YP_004337557.1| - 0.089 12.8 0.2 0.47 10.5 0.2 2.0 1 1 0 1 1 1 0 Ribbon-helix-helix domain EamA PF00892.20 gi|327310661|ref|YP_004337558.1| - 9.4e-21 74.4 28.4 1.3e-12 48.1 8.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|327310661|ref|YP_004337558.1| - 0.012 15.7 1.7 1.4 9.0 0.1 2.4 2 0 0 2 2 2 0 Putative transmembrane family 234 MFS_1 PF07690.16 gi|327310663|ref|YP_004337560.1| - 4.2e-07 29.2 49.8 4.2e-07 29.2 49.8 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|327310663|ref|YP_004337560.1| - 0.0059 15.5 13.4 0.28 10.0 6.5 2.2 1 1 1 2 2 2 2 MFS_1 like family UPF0020 PF01170.18 gi|327310664|ref|YP_004337561.1| - 1.1e-20 74.1 0.0 1.3e-19 70.7 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|327310664|ref|YP_004337561.1| - 4e-09 36.7 0.0 6.3e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|327310664|ref|YP_004337561.1| - 5.6e-06 26.0 0.0 8.5e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|327310664|ref|YP_004337561.1| - 0.002 18.8 0.0 0.0042 17.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|327310664|ref|YP_004337561.1| - 0.01 15.1 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|327310664|ref|YP_004337561.1| - 0.016 15.0 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|327310664|ref|YP_004337561.1| - 0.017 14.8 0.0 0.025 14.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 DUF401 PF04165.12 gi|327310665|ref|YP_004337562.1| - 3.7e-46 158.2 17.0 4.6e-46 157.9 17.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) Acetyltransf_1 PF00583.25 gi|327310665|ref|YP_004337562.1| - 0.034 14.4 0.1 0.59 10.4 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family T2SSE PF00437.20 gi|327310666|ref|YP_004337563.1| - 1.7e-12 47.0 0.0 3e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|327310666|ref|YP_004337563.1| - 0.0001 22.9 0.0 0.00026 21.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327310666|ref|YP_004337563.1| - 0.00024 21.5 0.0 0.00049 20.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|327310666|ref|YP_004337563.1| - 0.00082 19.4 0.0 0.0016 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|327310666|ref|YP_004337563.1| - 0.0012 19.3 0.0 0.0031 17.9 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|327310666|ref|YP_004337563.1| - 0.0013 18.5 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Thymidylate_kin PF02223.17 gi|327310666|ref|YP_004337563.1| - 0.0017 18.1 0.0 0.0034 17.1 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase RuvB_N PF05496.12 gi|327310666|ref|YP_004337563.1| - 0.0024 17.6 0.0 0.0068 16.2 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|327310666|ref|YP_004337563.1| - 0.0024 18.0 0.0 0.036 14.2 0.0 2.5 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|327310666|ref|YP_004337563.1| - 0.0026 18.0 0.0 0.0078 16.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain TsaE PF02367.17 gi|327310666|ref|YP_004337563.1| - 0.0026 17.8 0.0 0.0057 16.7 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|327310666|ref|YP_004337563.1| - 0.0035 17.1 0.0 0.0071 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|327310666|ref|YP_004337563.1| - 0.004 17.4 0.0 0.0096 16.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|327310666|ref|YP_004337563.1| - 0.0064 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|327310666|ref|YP_004337563.1| - 0.0068 16.4 0.0 0.025 14.6 0.0 2.0 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|327310666|ref|YP_004337563.1| - 0.0078 16.7 0.0 0.02 15.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter DnaB_C PF03796.15 gi|327310666|ref|YP_004337563.1| - 0.011 15.1 0.0 0.028 13.7 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 gi|327310666|ref|YP_004337563.1| - 0.011 15.7 0.0 0.049 13.5 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|327310666|ref|YP_004337563.1| - 0.015 14.9 0.5 0.081 12.5 0.1 2.4 2 1 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|327310666|ref|YP_004337563.1| - 0.02 14.4 0.0 0.14 11.6 0.0 2.1 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|327310666|ref|YP_004337563.1| - 0.025 15.0 0.0 0.077 13.4 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_24 PF13479.6 gi|327310666|ref|YP_004337563.1| - 0.037 13.7 0.1 0.13 12.0 0.1 1.8 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|327310666|ref|YP_004337563.1| - 0.042 13.9 0.0 0.078 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|327310666|ref|YP_004337563.1| - 0.044 13.7 0.0 0.094 12.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|327310666|ref|YP_004337563.1| - 0.055 13.4 0.0 0.09 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|327310666|ref|YP_004337563.1| - 0.076 12.8 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase PF06745.13 gi|327310666|ref|YP_004337563.1| - 0.088 12.1 0.0 0.2 10.9 0.0 1.6 1 0 0 1 1 1 0 KaiC SRP54 PF00448.22 gi|327310666|ref|YP_004337563.1| - 0.099 12.3 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_17 PF13207.6 gi|327310666|ref|YP_004337563.1| - 0.1 13.0 0.0 0.28 11.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|327310666|ref|YP_004337563.1| - 0.11 11.8 0.0 0.23 10.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 gi|327310666|ref|YP_004337563.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.18 gi|327310666|ref|YP_004337563.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_23 PF13476.6 gi|327310666|ref|YP_004337563.1| - 0.13 12.8 0.0 0.23 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|327310666|ref|YP_004337563.1| - 0.14 11.9 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|327310666|ref|YP_004337563.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|327310666|ref|YP_004337563.1| - 0.2 11.6 0.0 0.67 9.9 0.0 1.7 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|327310667|ref|YP_004337564.1| - 3.3e-71 239.3 0.0 3.9e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|327310667|ref|YP_004337564.1| - 0.00065 19.3 0.0 0.0013 18.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|327310667|ref|YP_004337564.1| - 0.0007 18.3 0.1 0.22 10.1 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.15 gi|327310667|ref|YP_004337564.1| - 0.001 18.4 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|327310667|ref|YP_004337564.1| - 0.0012 18.7 0.1 0.12 12.1 0.0 2.5 3 0 0 3 3 3 1 AAA domain Rad51 PF08423.11 gi|327310667|ref|YP_004337564.1| - 0.0013 18.0 0.1 0.0027 17.0 0.1 1.4 1 0 0 1 1 1 1 Rad51 AAA_22 PF13401.6 gi|327310667|ref|YP_004337564.1| - 0.094 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain RecA PF00154.21 gi|327310667|ref|YP_004337564.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF87 PF01935.17 gi|327310668|ref|YP_004337565.1| - 2.7e-31 109.5 0.0 3.9e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|327310668|ref|YP_004337565.1| - 7.1e-08 31.8 0.0 3.5e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|327310668|ref|YP_004337565.1| - 7e-07 28.2 0.3 0.0028 16.3 0.1 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|327310668|ref|YP_004337565.1| - 7.1e-07 29.3 0.1 2.5e-06 27.5 0.1 2.0 1 0 0 1 1 1 1 HAS barrel domain FtsK_SpoIIIE PF01580.18 gi|327310668|ref|YP_004337565.1| - 8.5e-05 22.0 0.3 0.037 13.4 0.0 2.6 2 1 1 3 3 3 3 FtsK/SpoIIIE family T4SS-DNA_transf PF02534.14 gi|327310668|ref|YP_004337565.1| - 0.00016 20.6 0.0 0.00024 20.0 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer ResIII PF04851.15 gi|327310668|ref|YP_004337565.1| - 0.00022 21.3 0.0 0.0022 18.0 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|327310668|ref|YP_004337565.1| - 0.01 15.6 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|327310668|ref|YP_004337565.1| - 0.025 14.9 0.0 1.4 9.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain Zot PF05707.12 gi|327310668|ref|YP_004337565.1| - 0.029 14.0 0.0 0.09 12.4 0.0 1.8 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF2782 PF11191.8 gi|327310668|ref|YP_004337565.1| - 0.038 14.2 0.0 0.086 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2782) AAA PF00004.29 gi|327310668|ref|YP_004337565.1| - 0.051 14.0 0.0 0.19 12.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|327310668|ref|YP_004337565.1| - 0.056 13.5 0.0 1.7 8.7 0.0 2.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|327310668|ref|YP_004337565.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.7 gi|327310668|ref|YP_004337565.1| - 0.22 10.4 0.0 0.83 8.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Metallophos_2 PF12850.7 gi|327310669|ref|YP_004337566.1| - 2.1e-11 44.3 0.0 5e-11 43.1 0.0 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|327310669|ref|YP_004337566.1| - 3.6e-11 44.0 0.1 6.6e-11 43.1 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase SMC_N PF02463.19 gi|327310670|ref|YP_004337567.1| - 1.3e-21 77.1 0.0 7.4e-21 74.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|327310670|ref|YP_004337567.1| - 2.2e-18 67.5 4.2 2.2e-18 67.5 4.2 4.6 2 2 0 2 2 1 1 AAA domain AAA_13 PF13166.6 gi|327310670|ref|YP_004337567.1| - 1.5e-13 50.3 10.3 4.3e-07 29.0 1.1 3.3 3 0 0 3 3 3 3 AAA domain AAA_15 PF13175.6 gi|327310670|ref|YP_004337567.1| - 3.4e-12 46.8 0.1 2.7e-07 30.6 0.0 3.0 3 1 0 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|327310670|ref|YP_004337567.1| - 1.9e-10 41.1 12.9 8e-05 22.6 0.0 3.2 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|327310670|ref|YP_004337567.1| - 6.1e-09 36.5 0.3 0.0041 17.6 0.0 3.7 3 1 0 3 3 3 2 ABC transporter AAA_29 PF13555.6 gi|327310670|ref|YP_004337567.1| - 1.2e-06 28.2 0.0 1.9e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain GAS PF13851.6 gi|327310670|ref|YP_004337567.1| - 3.1e-06 26.7 51.8 0.00052 19.4 10.5 4.1 3 1 1 4 4 4 3 Growth-arrest specific micro-tubule binding AAA_27 PF13514.6 gi|327310670|ref|YP_004337567.1| - 7.9e-05 22.3 0.0 7.9e-05 22.3 0.0 5.1 3 2 3 6 6 6 1 AAA domain Rad50_zn_hook PF04423.14 gi|327310670|ref|YP_004337567.1| - 0.00027 20.7 2.6 0.0011 18.7 0.2 3.5 2 0 0 2 2 1 1 Rad50 zinc hook motif DUF1664 PF07889.12 gi|327310670|ref|YP_004337567.1| - 0.00028 20.9 12.7 1.4 9.0 0.1 5.2 4 1 0 5 5 5 1 Protein of unknown function (DUF1664) MAD PF05557.13 gi|327310670|ref|YP_004337567.1| - 0.0014 17.1 5.8 0.0014 17.1 5.8 2.3 2 0 0 2 2 2 1 Mitotic checkpoint protein SbcCD_C PF13558.6 gi|327310670|ref|YP_004337567.1| - 0.0015 18.8 0.4 0.0061 16.8 0.0 2.3 3 0 0 3 3 1 1 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.8 gi|327310670|ref|YP_004337567.1| - 0.0018 15.9 45.8 0.011 13.4 4.6 3.8 3 1 1 4 4 4 2 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|327310670|ref|YP_004337567.1| - 0.002 18.5 1.9 0.002 18.5 1.9 6.0 1 1 2 3 3 2 1 AAA ATPase domain IFT57 PF10498.9 gi|327310670|ref|YP_004337567.1| - 0.0097 14.9 20.4 0.24 10.4 12.6 3.0 2 1 0 2 2 2 2 Intra-flagellar transport protein 57 KxDL PF10241.9 gi|327310670|ref|YP_004337567.1| - 0.014 15.6 20.7 0.048 14.0 0.4 5.5 2 2 1 5 5 5 0 Uncharacterized conserved protein RsgA_GTPase PF03193.16 gi|327310670|ref|YP_004337567.1| - 0.021 14.7 0.0 0.063 13.2 0.0 1.8 1 0 0 1 1 1 0 RsgA GTPase Fib_alpha PF08702.10 gi|327310670|ref|YP_004337567.1| - 0.039 14.1 11.4 0.61 10.3 0.4 3.9 2 1 3 5 5 5 0 Fibrinogen alpha/beta chain family ATPase_2 PF01637.18 gi|327310670|ref|YP_004337567.1| - 0.04 13.8 0.0 0.04 13.8 0.0 2.3 3 0 0 3 3 1 0 ATPase domain predominantly from Archaea AAA PF00004.29 gi|327310670|ref|YP_004337567.1| - 0.046 14.2 0.0 0.25 11.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mce4_CUP1 PF11887.8 gi|327310670|ref|YP_004337567.1| - 0.063 12.7 0.1 2.3 7.6 0.1 2.6 2 0 0 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative Sec34 PF04136.15 gi|327310670|ref|YP_004337567.1| - 0.085 12.7 15.8 2.2 8.2 0.8 4.2 2 1 1 4 4 4 0 Sec34-like family Occludin_ELL PF07303.13 gi|327310670|ref|YP_004337567.1| - 0.25 12.1 22.8 0.39 11.5 1.6 4.9 2 2 2 5 5 5 0 Occludin homology domain FUSC PF04632.12 gi|327310670|ref|YP_004337567.1| - 0.27 9.7 36.9 0.41 9.1 19.0 2.4 2 0 0 2 2 2 0 Fusaric acid resistance protein family BLOC1_2 PF10046.9 gi|327310670|ref|YP_004337567.1| - 0.34 11.2 24.5 0.11 12.8 0.7 5.4 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-F_leu_zip PF10473.9 gi|327310670|ref|YP_004337567.1| - 0.34 10.9 58.0 1.5 8.8 18.2 4.0 2 2 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF773 PF05600.12 gi|327310670|ref|YP_004337567.1| - 0.63 8.7 0.0 0.22 10.2 2.0 4.9 2 2 3 6 6 6 0 CDK5 regulatory subunit-associated protein 3 DUF16 PF01519.16 gi|327310670|ref|YP_004337567.1| - 0.88 10.1 17.7 9.4 6.8 1.2 3.8 3 1 0 3 3 3 0 Protein of unknown function DUF16 Exonuc_VII_L PF02601.15 gi|327310670|ref|YP_004337567.1| - 0.98 8.9 32.3 0.15 11.6 2.6 3.1 2 1 0 2 2 2 0 Exonuclease VII, large subunit Laminin_II PF06009.12 gi|327310670|ref|YP_004337567.1| - 1.9 8.5 23.7 6.3 6.8 2.2 4.8 2 2 2 4 4 4 0 Laminin Domain II DUF4200 PF13863.6 gi|327310670|ref|YP_004337567.1| - 2.3 8.7 58.7 0.097 13.1 10.3 5.4 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) HMMR_N PF15905.5 gi|327310670|ref|YP_004337567.1| - 2.9 7.3 41.9 2.6 7.4 25.9 2.8 2 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Spc7 PF08317.11 gi|327310670|ref|YP_004337567.1| - 3.4 6.5 56.2 3.8 6.3 11.1 4.2 2 2 1 3 3 3 0 Spc7 kinetochore protein V_ATPase_I PF01496.19 gi|327310670|ref|YP_004337567.1| - 4.4 5.1 22.5 0.76 7.6 7.7 3.0 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family FlxA PF14282.6 gi|327310670|ref|YP_004337567.1| - 4.5 7.3 9.2 0.92 9.5 0.3 3.6 3 1 0 4 4 4 0 FlxA-like protein TMPIT PF07851.13 gi|327310670|ref|YP_004337567.1| - 5 6.3 21.0 0.53 9.5 2.4 3.2 2 1 1 3 3 3 0 TMPIT-like protein FlaC_arch PF05377.11 gi|327310670|ref|YP_004337567.1| - 5.4 7.5 21.5 19 5.7 0.1 6.2 5 2 1 6 6 6 0 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|327310670|ref|YP_004337567.1| - 5.8 7.2 18.0 1.3 9.3 1.4 4.3 3 2 1 4 4 4 0 Domain of unknown function (DUF5082) LPP PF04728.13 gi|327310670|ref|YP_004337567.1| - 6.2 7.3 11.5 1.2 9.6 2.3 3.9 4 1 1 5 5 3 0 Lipoprotein leucine-zipper BAR_3 PF16746.5 gi|327310670|ref|YP_004337567.1| - 7.3 6.2 13.9 0.3 10.7 0.4 3.3 3 1 0 3 3 3 0 BAR domain of APPL family eRF1_2 PF03464.15 gi|327310671|ref|YP_004337568.1| - 1.7e-32 112.5 0.3 3.3e-32 111.6 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|327310671|ref|YP_004337568.1| - 2.2e-14 53.9 0.6 5.7e-14 52.5 0.0 2.0 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|327310671|ref|YP_004337568.1| - 2.4e-12 47.3 0.0 4.4e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_3 PF03465.15 gi|327310671|ref|YP_004337568.1| - 3.6e-11 43.5 2.8 5.9e-10 39.6 2.8 2.7 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|327310671|ref|YP_004337568.1| - 4.4e-05 23.5 0.0 8.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 Stevor PF17410.2 gi|327310672|ref|YP_004337569.1| - 0.81 9.2 1.4 1.3 8.5 1.4 1.4 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Hemerythrin PF01814.23 gi|327310674|ref|YP_004337571.1| - 3.9e-20 72.8 0.0 5.8e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DUF374 PF04028.13 gi|327310674|ref|YP_004337571.1| - 0.17 11.5 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF374) DUF1122 PF06557.11 gi|327310675|ref|YP_004337572.1| - 1.4e-30 106.1 0.0 1.8e-30 105.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Aldo_ket_red PF00248.21 gi|327310676|ref|YP_004337573.1| - 7.1e-46 156.7 0.0 8.2e-44 150.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_23 PF13384.6 gi|327310676|ref|YP_004337573.1| - 0.088 12.6 0.2 0.36 10.7 0.1 2.1 3 0 0 3 3 3 0 Homeodomain-like domain EccE PF11203.8 gi|327310677|ref|YP_004337574.1| - 0.00021 21.6 0.1 0.00022 21.5 0.1 1.1 1 0 0 1 1 1 1 Putative type VII ESX secretion system translocon, EccE DUF4702 PF15774.5 gi|327310677|ref|YP_004337574.1| - 0.024 13.6 0.0 0.025 13.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4702) YbjQ_1 PF01906.17 gi|327310678|ref|YP_004337575.1| - 3e-36 124.2 0.6 3.4e-36 124.0 0.6 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|327310678|ref|YP_004337575.1| - 0.024 15.1 0.1 0.11 13.0 0.0 1.9 2 0 0 2 2 2 0 Selenium binding protein Frigida PF07899.11 gi|327310679|ref|YP_004337576.1| - 0.0018 17.6 0.0 0.0022 17.3 0.0 1.0 1 0 0 1 1 1 1 Frigida-like protein HSBP1 PF06825.12 gi|327310679|ref|YP_004337576.1| - 0.034 14.0 0.1 0.078 12.9 0.0 1.7 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Ferritin PF00210.24 gi|327310679|ref|YP_004337576.1| - 0.049 13.6 0.0 0.055 13.4 0.0 1.1 1 0 0 1 1 1 0 Ferritin-like domain Phasin_2 PF09361.10 gi|327310679|ref|YP_004337576.1| - 0.062 13.6 0.1 0.067 13.5 0.1 1.1 1 0 0 1 1 1 0 Phasin protein GAT PF03127.14 gi|327310679|ref|YP_004337576.1| - 0.077 13.3 0.0 0.15 12.4 0.0 1.5 1 1 0 1 1 1 0 GAT domain CoA_binding_2 PF13380.6 gi|327310680|ref|YP_004337577.1| - 2.8e-34 118.1 0.1 3.3e-34 117.9 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|327310680|ref|YP_004337577.1| - 2.4e-05 25.0 0.0 5.6e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 CoA binding domain ATP-cone PF03477.16 gi|327310681|ref|YP_004337578.1| - 4.3e-09 36.8 1.4 4.8e-09 36.7 1.4 1.1 1 0 0 1 1 1 1 ATP cone domain Polbeta PF18765.1 gi|327310682|ref|YP_004337579.1| - 1.8e-08 34.4 0.0 1.9e-08 34.3 0.0 1.0 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Aconitase PF00330.20 gi|327310684|ref|YP_004337581.1| - 1.2e-166 555.3 0.0 2.1e-166 554.5 0.0 1.4 2 0 0 2 2 2 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|327310684|ref|YP_004337581.1| - 2.3e-37 128.2 0.0 3.7e-37 127.6 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Trypsin_2 PF13365.6 gi|327310685|ref|YP_004337582.1| - 9.8e-25 88.2 0.5 9.8e-25 88.2 0.5 1.5 2 0 0 2 2 2 1 Trypsin-like peptidase domain PDZ_6 PF17820.1 gi|327310685|ref|YP_004337582.1| - 2.7e-11 43.1 0.1 6.8e-11 41.8 0.1 1.7 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|327310685|ref|YP_004337582.1| - 2.2e-10 40.7 0.0 5.3e-10 39.5 0.0 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|327310685|ref|YP_004337582.1| - 4.6e-10 39.7 0.0 1e-09 38.5 0.0 1.6 1 1 0 1 1 1 1 Trypsin PDZ PF00595.24 gi|327310685|ref|YP_004337582.1| - 1.1e-08 35.3 0.0 3.9e-08 33.5 0.0 1.9 2 0 0 2 2 2 1 PDZ domain Peptidase_S29 PF02907.15 gi|327310685|ref|YP_004337582.1| - 0.021 14.6 0.0 0.24 11.1 0.1 2.3 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.9 gi|327310685|ref|YP_004337582.1| - 0.029 13.0 0.8 0.043 12.5 0.8 1.1 1 0 0 1 1 1 0 Peptidase S46 Tricorn_PDZ PF14685.6 gi|327310685|ref|YP_004337582.1| - 0.12 12.4 0.0 0.36 10.8 0.0 1.8 1 0 0 1 1 1 0 Tricorn protease PDZ domain Peptidase_S7 PF00949.21 gi|327310685|ref|YP_004337582.1| - 0.32 10.8 0.5 1.2 9.0 0.2 2.0 2 0 0 2 2 2 0 Peptidase S7, Flavivirus NS3 serine protease XdhC_C PF13478.6 gi|327310686|ref|YP_004337583.1| - 2.2e-24 86.4 1.1 3e-24 85.9 1.1 1.2 1 0 0 1 1 1 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|327310686|ref|YP_004337583.1| - 0.018 14.4 0.1 0.03 13.7 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|327310686|ref|YP_004337583.1| - 0.024 14.9 0.1 0.28 11.4 0.1 2.3 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain MoeA_N PF03453.17 gi|327310687|ref|YP_004337584.1| - 8.9e-44 149.0 0.2 1.5e-43 148.2 0.2 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|327310687|ref|YP_004337584.1| - 7.8e-24 84.0 0.1 1.3e-23 83.3 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|327310687|ref|YP_004337584.1| - 3.1e-16 59.3 2.0 4.5e-16 58.8 0.1 2.4 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) QueC PF06508.13 gi|327310688|ref|YP_004337585.1| - 7.1e-53 179.2 0.0 9.3e-53 178.8 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|327310688|ref|YP_004337585.1| - 8.2e-17 61.3 0.0 1.7e-16 60.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|327310688|ref|YP_004337585.1| - 1e-11 45.2 0.0 2.2e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|327310688|ref|YP_004337585.1| - 1.8e-05 24.4 0.0 6.1e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|327310688|ref|YP_004337585.1| - 0.0049 15.7 0.0 0.0091 14.8 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|327310688|ref|YP_004337585.1| - 0.0052 16.5 0.0 0.0086 15.8 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|327310688|ref|YP_004337585.1| - 0.21 11.3 0.0 0.42 10.3 0.0 1.5 1 0 0 1 1 1 0 PP-loop family RVT_3 PF13456.6 gi|327310689|ref|YP_004337586.1| - 1.6e-22 79.6 0.0 2e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|327310689|ref|YP_004337586.1| - 1.3e-09 38.4 0.0 1.7e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 RNase H IF3_N PF05198.16 gi|327310689|ref|YP_004337586.1| - 0.069 13.4 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain DUF3721 PF12518.8 gi|327310689|ref|YP_004337586.1| - 0.48 10.3 1.5 0.71 9.8 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function TF_Zn_Ribbon PF08271.12 gi|327310690|ref|YP_004337587.1| - 2.5e-05 23.7 1.4 3.7e-05 23.1 0.6 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|327310690|ref|YP_004337587.1| - 9.3e-05 22.0 2.7 0.00023 20.8 2.7 1.7 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|327310690|ref|YP_004337587.1| - 0.00015 21.1 3.6 0.00074 18.8 3.6 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|327310690|ref|YP_004337587.1| - 0.004 17.0 0.9 0.021 14.7 0.9 2.0 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|327310690|ref|YP_004337587.1| - 0.026 14.5 0.7 0.047 13.7 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-Di19 PF05605.12 gi|327310690|ref|YP_004337587.1| - 0.033 14.5 2.1 4.8 7.6 0.3 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-CHCC PF10276.9 gi|327310690|ref|YP_004337587.1| - 0.054 13.6 6.3 1.5 8.9 0.7 2.3 2 0 0 2 2 2 0 Zinc-finger domain Prok-RING_1 PF14446.6 gi|327310690|ref|YP_004337587.1| - 0.055 13.4 0.2 0.1 12.5 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Cys_rich_CPXG PF14255.6 gi|327310690|ref|YP_004337587.1| - 0.065 13.1 6.4 3.7 7.5 0.6 3.2 3 0 0 3 3 3 0 Cysteine-rich CPXCG HypA PF01155.19 gi|327310690|ref|YP_004337587.1| - 0.077 13.0 0.4 0.12 12.3 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-BED PF02892.15 gi|327310690|ref|YP_004337587.1| - 0.13 12.3 0.4 18 5.5 0.0 2.4 1 1 1 2 2 2 0 BED zinc finger PhnA_Zn_Ribbon PF08274.12 gi|327310690|ref|YP_004337587.1| - 0.14 12.2 2.3 0.25 11.4 2.3 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zf-HYPF PF07503.12 gi|327310690|ref|YP_004337587.1| - 0.15 11.8 2.8 0.31 10.8 2.8 1.5 1 0 0 1 1 1 0 HypF finger Ribosomal_S27e PF01667.17 gi|327310690|ref|YP_004337587.1| - 0.18 11.5 0.1 0.34 10.7 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 zf-C2H2_4 PF13894.6 gi|327310690|ref|YP_004337587.1| - 0.28 12.1 0.7 36 5.6 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RING_7 PF02591.15 gi|327310690|ref|YP_004337587.1| - 0.32 11.2 2.3 8.4 6.7 0.3 2.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain UPF0547 PF10571.9 gi|327310690|ref|YP_004337587.1| - 0.35 11.0 3.2 5.8 7.1 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PyrI_C PF02748.15 gi|327310690|ref|YP_004337587.1| - 0.44 10.5 2.1 17 5.4 0.0 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain CbtB PF09489.10 gi|327310690|ref|YP_004337587.1| - 1.5 9.0 4.5 0.81 9.8 2.2 1.8 1 1 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) Zn_Tnp_IS1595 PF12760.7 gi|327310690|ref|YP_004337587.1| - 2.2 8.3 4.9 23 5.1 0.3 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|327310691|ref|YP_004337588.1| - 0.0039 16.9 1.4 0.67 9.7 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|327310691|ref|YP_004337588.1| - 0.004 16.5 3.2 0.028 13.8 3.5 2.0 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|327310691|ref|YP_004337588.1| - 0.035 14.1 0.5 0.059 13.4 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon PyrI_C PF02748.15 gi|327310691|ref|YP_004337588.1| - 0.081 12.8 1.9 4.9 7.1 0.1 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zinc_ribbon_10 PF10058.9 gi|327310691|ref|YP_004337588.1| - 0.11 12.2 0.1 6.1 6.7 0.1 2.5 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-NADH-PPase PF09297.11 gi|327310691|ref|YP_004337588.1| - 0.13 11.9 0.2 0.35 10.6 0.2 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_10 PF16588.5 gi|327310691|ref|YP_004337588.1| - 0.14 12.0 3.1 8 6.3 0.3 2.4 2 0 0 2 2 2 0 C2H2 zinc-finger DUF1451 PF07295.11 gi|327310691|ref|YP_004337588.1| - 0.16 12.0 0.2 0.33 11.0 0.2 1.5 1 0 0 1 1 1 0 Zinc-ribbon containing domain Cys_rich_CPXG PF14255.6 gi|327310691|ref|YP_004337588.1| - 0.18 11.7 0.7 12 5.9 0.1 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG Prok-RING_1 PF14446.6 gi|327310691|ref|YP_004337588.1| - 0.21 11.5 0.9 0.31 11.0 0.9 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-BED PF02892.15 gi|327310691|ref|YP_004337588.1| - 0.86 9.7 2.5 7.7 6.6 0.2 2.2 1 1 1 2 2 2 0 BED zinc finger zf-CHCC PF10276.9 gi|327310691|ref|YP_004337588.1| - 0.97 9.5 4.3 12 6.0 0.1 2.8 3 0 0 3 3 3 0 Zinc-finger domain Tetraspanin PF00335.20 gi|327310692|ref|YP_004337589.1| - 1.6 8.4 4.7 1.8 8.2 4.7 1.2 1 0 0 1 1 1 0 Tetraspanin family YtpI PF14007.6 gi|327310692|ref|YP_004337589.1| - 6.1 7.1 8.6 1.8 8.8 3.9 2.1 1 1 1 2 2 2 0 YtpI-like protein Band_7_1 PF13421.6 gi|327310693|ref|YP_004337590.1| - 9.3e-30 103.9 0.0 1.4e-29 103.4 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family zinc_ribbon_2 PF13240.6 gi|327310693|ref|YP_004337590.1| - 3.3e-16 58.4 17.0 1.6e-08 34.0 5.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Band_7 PF01145.25 gi|327310693|ref|YP_004337590.1| - 1.4e-15 57.8 0.0 1.9e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 SPFH domain / Band 7 family DZR PF12773.7 gi|327310693|ref|YP_004337590.1| - 3.3e-12 46.2 12.7 5.2e-12 45.6 12.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|327310693|ref|YP_004337590.1| - 3.9e-08 32.4 15.1 0.00037 19.8 3.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-RanBP PF00641.18 gi|327310693|ref|YP_004337590.1| - 5.5e-06 25.6 8.5 0.0008 18.7 1.7 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zinc_ribbon_15 PF17032.5 gi|327310693|ref|YP_004337590.1| - 0.00017 22.3 7.8 0.11 13.3 1.8 2.3 2 0 0 2 2 2 2 zinc-ribbon family DHHC PF01529.20 gi|327310693|ref|YP_004337590.1| - 0.0015 18.6 5.2 0.14 12.3 1.1 2.3 1 1 1 2 2 2 2 DHHC palmitoyltransferase zf-tcix PF14952.6 gi|327310693|ref|YP_004337590.1| - 0.023 14.3 17.2 0.35 10.5 2.6 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF35_N PF12172.8 gi|327310693|ref|YP_004337590.1| - 0.03 14.2 14.5 0.21 11.5 3.2 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|327310693|ref|YP_004337590.1| - 0.069 13.1 15.4 1.9 8.4 0.3 4.2 3 1 0 3 3 3 0 Nudix N-terminal DUF2719 PF10891.8 gi|327310693|ref|YP_004337590.1| - 0.074 12.9 2.6 1.5 8.7 0.2 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2719) GYF PF02213.16 gi|327310693|ref|YP_004337590.1| - 0.17 11.6 0.4 0.38 10.5 0.0 1.7 2 0 0 2 2 2 0 GYF domain zf-B_box PF00643.24 gi|327310693|ref|YP_004337590.1| - 0.51 10.5 4.9 2.1 8.5 0.9 2.3 2 0 0 2 2 2 0 B-box zinc finger PolC_DP2 PF03833.13 gi|327310693|ref|YP_004337590.1| - 1.4 6.7 2.6 1.9 6.3 2.6 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-CHY PF05495.12 gi|327310693|ref|YP_004337590.1| - 3.2 8.3 6.8 10 6.7 6.8 1.8 1 1 0 1 1 1 0 CHY zinc finger zf-TRM13_CCCH PF11722.8 gi|327310693|ref|YP_004337590.1| - 4.6 7.1 6.0 7.1 6.5 0.4 2.3 2 0 0 2 2 2 0 CCCH zinc finger in TRM13 protein zinc-ribbons_6 PF07191.12 gi|327310693|ref|YP_004337590.1| - 4.7 7.3 8.7 15 5.6 8.7 1.9 1 1 0 1 1 1 0 zinc-ribbons DNA_RNApol_7kD PF03604.13 gi|327310693|ref|YP_004337590.1| - 4.8 6.9 8.2 5.8 6.7 2.0 3.2 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.10 gi|327310693|ref|YP_004337590.1| - 6 6.7 11.7 8.6 6.2 0.1 4.2 4 0 0 4 4 4 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|327310693|ref|YP_004337590.1| - 6.2 6.8 8.9 17 5.4 0.1 2.6 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|327310693|ref|YP_004337590.1| - 8 6.2 10.8 11 5.7 0.2 3.9 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|327310693|ref|YP_004337590.1| - 8.3 6.6 19.3 4.1 7.6 5.3 3.6 1 1 1 2 2 1 0 Uncharacterised protein family UPF0547 zf-C3HC4_2 PF13923.6 gi|327310693|ref|YP_004337590.1| - 9.3 6.2 10.8 0.16 11.8 2.1 2.4 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) GHMP_kinases_C PF08544.13 gi|327310695|ref|YP_004337592.1| - 1.1e-10 41.8 0.5 1.1e-10 41.8 0.5 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|327310695|ref|YP_004337592.1| - 1.4e-08 34.9 4.3 1.4e-08 34.9 4.3 2.9 3 0 0 3 3 3 1 GHMP kinases N terminal domain CcdA PF07362.12 gi|327310696|ref|YP_004337593.1| - 0.00029 21.2 1.4 0.00062 20.1 1.4 1.8 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_3 PF12651.7 gi|327310696|ref|YP_004337593.1| - 0.004 17.1 1.7 0.019 14.9 0.1 2.6 2 2 1 3 3 3 1 Ribbon-helix-helix domain DUF4290 PF14123.6 gi|327310696|ref|YP_004337593.1| - 0.014 15.0 0.0 0.016 14.7 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4290) Mistic PF11458.8 gi|327310696|ref|YP_004337593.1| - 0.15 12.0 0.0 0.24 11.4 0.0 1.5 1 1 0 1 1 1 0 Membrane-integrating protein Mistic Phage_holin_4_1 PF05105.12 gi|327310696|ref|YP_004337593.1| - 0.2 11.8 0.0 0.3 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage holin family PSK_trans_fac PF07704.11 gi|327310696|ref|YP_004337593.1| - 0.55 11.0 5.7 0.61 10.9 5.7 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor DUF488 PF04343.13 gi|327310697|ref|YP_004337594.1| - 2.2e-28 99.3 0.2 2.6e-28 99.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF3105 PF11303.8 gi|327310697|ref|YP_004337594.1| - 0.1 12.7 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3105) Glycos_transf_1 PF00534.20 gi|327310698|ref|YP_004337595.1| - 2.4e-25 89.1 0.0 3.4e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327310698|ref|YP_004337595.1| - 9.2e-18 65.0 0.0 2.3e-16 60.5 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|327310698|ref|YP_004337595.1| - 1.4e-07 31.7 1.0 2.8e-06 27.4 0.2 2.6 2 2 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|327310698|ref|YP_004337595.1| - 1.4e-07 32.1 6.0 1.4e-07 32.1 6.0 2.7 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|327310698|ref|YP_004337595.1| - 2.7e-07 30.9 0.0 9.5e-07 29.1 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 AP_endonuc_2 PF01261.24 gi|327310698|ref|YP_004337595.1| - 0.00022 20.7 1.5 0.0032 16.9 0.0 2.8 3 0 0 3 3 3 1 Xylose isomerase-like TIM barrel TM_helix PF05552.12 gi|327310699|ref|YP_004337596.1| - 3.7e-06 26.8 2.3 3.7e-06 26.8 2.3 2.8 2 0 0 2 2 2 1 Conserved TM helix GP70 PF17429.2 gi|327310699|ref|YP_004337596.1| - 0.0054 16.5 2.7 0.01 15.7 2.7 1.4 1 0 0 1 1 1 1 Gene product 70 UPF0542 PF15086.6 gi|327310699|ref|YP_004337596.1| - 0.12 12.3 0.5 2.5 8.1 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 Abhydrolase_9_N PF15420.6 gi|327310699|ref|YP_004337596.1| - 0.47 10.4 19.0 0.016 15.2 11.7 1.9 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus AAA_25 PF13481.6 gi|327310700|ref|YP_004337597.1| - 2e-06 27.5 0.1 3.5e-05 23.5 0.1 2.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|327310700|ref|YP_004337597.1| - 2.2e-06 28.1 0.0 4.1e-06 27.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|327310700|ref|YP_004337597.1| - 1.2e-05 25.7 0.0 2.4e-05 24.8 0.0 1.5 2 0 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|327310700|ref|YP_004337597.1| - 1.4e-05 25.4 0.0 9.7e-05 22.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|327310700|ref|YP_004337597.1| - 0.0002 21.2 0.0 0.00043 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|327310700|ref|YP_004337597.1| - 0.0015 18.5 0.0 0.005 16.8 0.0 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea GvpD PF07088.11 gi|327310700|ref|YP_004337597.1| - 0.0021 16.8 0.0 0.28 9.8 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein ATPase PF06745.13 gi|327310700|ref|YP_004337597.1| - 0.003 17.0 0.1 0.12 11.7 0.0 2.4 1 1 1 2 2 2 1 KaiC AAA_11 PF13086.6 gi|327310700|ref|YP_004337597.1| - 0.0048 16.7 0.0 0.0066 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|327310700|ref|YP_004337597.1| - 0.0069 16.6 0.1 0.034 14.3 0.1 2.1 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|327310700|ref|YP_004337597.1| - 0.0073 16.1 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|327310700|ref|YP_004337597.1| - 0.0086 16.3 0.0 0.015 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|327310700|ref|YP_004337597.1| - 0.0088 16.6 0.0 0.017 15.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|327310700|ref|YP_004337597.1| - 0.0089 16.6 0.0 0.022 15.3 0.0 1.6 2 0 0 2 2 1 1 AAA domain CobU PF02283.16 gi|327310700|ref|YP_004337597.1| - 0.01 15.4 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_5 PF07728.14 gi|327310700|ref|YP_004337597.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|327310700|ref|YP_004337597.1| - 0.014 15.2 0.0 0.11 12.2 0.0 2.1 1 1 0 1 1 1 0 IstB-like ATP binding protein NACHT PF05729.12 gi|327310700|ref|YP_004337597.1| - 0.033 14.1 0.0 0.068 13.1 0.0 1.6 1 0 0 1 1 1 0 NACHT domain TIP49 PF06068.13 gi|327310700|ref|YP_004337597.1| - 0.051 12.8 0.0 0.082 12.1 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_29 PF13555.6 gi|327310700|ref|YP_004337597.1| - 0.066 13.0 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|327310700|ref|YP_004337597.1| - 0.1 13.0 0.0 0.27 11.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.16 gi|327310700|ref|YP_004337597.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein Mg_chelatase PF01078.21 gi|327310700|ref|YP_004337597.1| - 0.12 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PRORP PF16953.5 gi|327310700|ref|YP_004337597.1| - 0.13 11.8 0.1 4.1 6.9 0.0 2.1 2 0 0 2 2 2 0 Protein-only RNase P DUF2075 PF09848.9 gi|327310700|ref|YP_004337597.1| - 0.13 11.4 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) cobW PF02492.19 gi|327310700|ref|YP_004337597.1| - 0.16 11.6 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RecA PF00154.21 gi|327310700|ref|YP_004337597.1| - 0.17 11.4 0.0 5.2 6.4 0.0 2.2 2 0 0 2 2 2 0 recA bacterial DNA recombination protein IPT PF01745.16 gi|327310700|ref|YP_004337597.1| - 0.18 11.2 0.0 0.44 9.9 0.0 1.6 2 0 0 2 2 2 0 Isopentenyl transferase CobA_CobO_BtuR PF02572.15 gi|327310700|ref|YP_004337597.1| - 0.19 12.0 0.1 5.5 7.2 0.1 2.3 1 1 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DFP PF04127.15 gi|327310702|ref|YP_004337599.1| - 1e-49 168.9 0.1 5.2e-48 163.4 0.0 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|327310702|ref|YP_004337599.1| - 2.1e-33 115.3 0.1 3.2e-33 114.7 0.1 1.3 1 0 0 1 1 1 1 Flavoprotein YjeF_N PF03853.15 gi|327310702|ref|YP_004337599.1| - 0.03 14.2 0.2 9.1 6.1 0.0 2.8 1 1 1 3 3 3 0 YjeF-related protein N-terminus RPA_interact_C PF14768.6 gi|327310703|ref|YP_004337600.1| - 0.00064 20.2 0.0 0.00076 20.0 0.0 1.1 1 0 0 1 1 1 1 Replication protein A interacting C-terminal zinc_ribbon_2 PF13240.6 gi|327310703|ref|YP_004337600.1| - 0.0029 17.3 0.7 1.3 8.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain YacG PF03884.14 gi|327310703|ref|YP_004337600.1| - 0.0032 17.2 0.5 0.0046 16.6 0.5 1.3 1 0 0 1 1 1 1 DNA gyrase inhibitor YacG zf-ribbon_3 PF13248.6 gi|327310703|ref|YP_004337600.1| - 0.004 16.5 4.1 0.033 13.6 4.2 2.1 1 1 0 1 1 1 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|327310703|ref|YP_004337600.1| - 0.0041 17.1 4.4 0.63 10.1 0.2 2.2 1 1 1 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.7 gi|327310703|ref|YP_004337600.1| - 0.011 15.8 0.2 0.018 15.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|327310703|ref|YP_004337600.1| - 0.011 15.3 0.2 4.3 7.0 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2HC5 PF06221.13 gi|327310703|ref|YP_004337600.1| - 0.013 15.5 0.2 0.016 15.2 0.2 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type CpXC PF14353.6 gi|327310703|ref|YP_004337600.1| - 0.015 15.3 0.2 1.7 8.7 0.0 2.0 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|327310703|ref|YP_004337600.1| - 0.016 15.1 0.2 0.026 14.4 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain BCA_ABC_TP_C PF12399.8 gi|327310703|ref|YP_004337600.1| - 0.018 15.0 0.1 0.027 14.4 0.1 1.3 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter DUF1922 PF09082.10 gi|327310703|ref|YP_004337600.1| - 0.023 15.0 0.3 0.023 15.0 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) zf-FPG_IleRS PF06827.14 gi|327310703|ref|YP_004337600.1| - 0.023 14.5 3.2 0.086 12.7 3.2 1.9 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.6 gi|327310703|ref|YP_004337600.1| - 0.029 14.7 3.5 0.51 10.8 0.2 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF35_N PF12172.8 gi|327310703|ref|YP_004337600.1| - 0.033 14.1 2.0 1.6 8.7 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Sec23_Sec24 PF04810.15 gi|327310703|ref|YP_004337600.1| - 0.05 13.6 0.9 0.22 11.6 0.9 1.8 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger Prok-RING_4 PF14447.6 gi|327310703|ref|YP_004337600.1| - 0.061 13.2 1.0 0.11 12.3 1.0 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 Zn_Tnp_IS91 PF14319.6 gi|327310703|ref|YP_004337600.1| - 0.062 13.3 0.2 0.068 13.2 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF3268 PF11672.8 gi|327310703|ref|YP_004337600.1| - 0.068 13.5 0.3 0.62 10.4 0.0 2.0 1 1 0 1 1 1 0 zinc-finger-containing domain FYDLN_acid PF09538.10 gi|327310703|ref|YP_004337600.1| - 0.069 13.8 0.6 0.46 11.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) Zn-ribbon_8 PF09723.10 gi|327310703|ref|YP_004337600.1| - 0.072 13.2 3.2 3.6 7.8 3.7 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|327310703|ref|YP_004337600.1| - 0.075 12.8 1.2 0.17 11.7 1.2 1.6 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Cys_rich_CPCC PF14206.6 gi|327310703|ref|YP_004337600.1| - 0.093 12.6 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Cysteine-rich CPCC A2L_zn_ribbon PF08792.10 gi|327310703|ref|YP_004337600.1| - 0.097 12.4 0.5 3.2 7.6 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-Di19 PF05605.12 gi|327310703|ref|YP_004337600.1| - 0.097 13.0 3.3 0.57 10.5 0.1 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Mu-like_Com PF10122.9 gi|327310703|ref|YP_004337600.1| - 0.1 12.1 2.4 2.5 7.6 0.6 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com TF_Zn_Ribbon PF08271.12 gi|327310703|ref|YP_004337600.1| - 0.1 12.1 3.9 0.69 9.5 3.9 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|327310703|ref|YP_004337600.1| - 0.16 12.0 0.7 0.23 11.5 0.6 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ogr_Delta PF04606.12 gi|327310703|ref|YP_004337600.1| - 0.18 11.8 3.4 5.6 7.0 0.0 2.5 3 0 0 3 3 2 0 Ogr/Delta-like zinc finger zf_C2H2_6 PF18450.1 gi|327310703|ref|YP_004337600.1| - 0.21 11.3 1.9 2.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Zinc Finger domain zf-NADH-PPase PF09297.11 gi|327310703|ref|YP_004337600.1| - 0.24 11.1 5.9 3.7 7.3 6.9 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ISL3 PF14690.6 gi|327310703|ref|YP_004337600.1| - 0.68 10.6 4.2 14 6.5 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.6 gi|327310703|ref|YP_004337600.1| - 1.2 9.2 5.5 5.5 7.0 1.0 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 GTP_EFTU PF00009.27 gi|327310704|ref|YP_004337601.1| - 9.9e-58 194.9 0.0 1.5e-57 194.3 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|327310704|ref|YP_004337601.1| - 8.4e-29 99.8 0.0 3.4e-28 97.9 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|327310704|ref|YP_004337601.1| - 1.1e-23 83.2 0.2 2.1e-23 82.2 0.2 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|327310704|ref|YP_004337601.1| - 1.6e-21 76.2 0.0 4.7e-21 74.6 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|327310704|ref|YP_004337601.1| - 2.6e-16 59.8 0.3 5.8e-16 58.6 0.3 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|327310704|ref|YP_004337601.1| - 0.015 15.4 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase 3HCDH_N PF02737.18 gi|327310704|ref|YP_004337601.1| - 0.069 13.0 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1931 PF09123.11 gi|327310704|ref|YP_004337601.1| - 0.16 12.1 0.7 5.3 7.2 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1931) Slx4 PF09494.10 gi|327310705|ref|YP_004337602.1| - 0.012 15.6 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Slx4 endonuclease GATase PF00117.28 gi|327310706|ref|YP_004337603.1| - 7e-39 133.6 0.0 8.6e-39 133.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|327310706|ref|YP_004337603.1| - 2.4e-11 43.8 0.0 4.6e-09 36.4 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_sm_chain PF00988.22 gi|327310706|ref|YP_004337603.1| - 5.1e-10 39.3 0.0 7.9e-10 38.6 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Lyase_1 PF00206.20 gi|327310707|ref|YP_004337604.1| - 5.7e-41 140.9 0.0 8e-41 140.4 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|327310707|ref|YP_004337604.1| - 0.0014 19.3 0.0 0.0052 17.5 0.0 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal RimK PF08443.11 gi|327310708|ref|YP_004337605.1| - 3.4e-39 134.4 0.0 4.1e-39 134.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|327310708|ref|YP_004337605.1| - 4.9e-13 48.8 0.0 7.2e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|327310708|ref|YP_004337605.1| - 5.8e-12 45.9 0.0 8.7e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|327310708|ref|YP_004337605.1| - 3.3e-08 33.3 0.0 9.5e-08 31.8 0.0 1.8 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|327310708|ref|YP_004337605.1| - 0.00074 18.9 0.0 0.12 11.6 0.0 2.4 1 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_Ter PF15632.6 gi|327310708|ref|YP_004337605.1| - 0.00078 19.2 0.0 0.0014 18.4 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|327310708|ref|YP_004337605.1| - 0.0011 18.6 0.0 0.0026 17.3 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|327310708|ref|YP_004337605.1| - 0.0019 17.7 0.0 0.027 13.9 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain TTL PF03133.15 gi|327310708|ref|YP_004337605.1| - 0.0058 15.8 0.0 0.026 13.7 0.0 1.8 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family Dala_Dala_lig_C PF07478.13 gi|327310708|ref|YP_004337605.1| - 0.01 15.4 0.0 0.11 12.0 0.0 2.0 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus Dynactin PF12455.8 gi|327310709|ref|YP_004337606.1| - 0.033 13.4 0.1 0.033 13.4 0.1 1.1 1 0 0 1 1 1 0 Dynein associated protein GCR1_C PF12550.8 gi|327310709|ref|YP_004337606.1| - 0.063 13.6 0.9 0.092 13.1 0.9 1.3 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes TcdB_N PF12918.7 gi|327310709|ref|YP_004337606.1| - 0.17 12.2 1.2 0.56 10.5 0.6 1.9 1 1 1 2 2 2 0 TcdB toxin N-terminal helical domain tRNA-synt_2d PF01409.20 gi|327310710|ref|YP_004337607.1| - 2.3e-77 259.8 0.0 2.9e-77 259.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|327310710|ref|YP_004337607.1| - 1.3e-08 34.6 0.0 3e-06 26.8 0.1 2.2 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|327310710|ref|YP_004337607.1| - 8.9e-08 31.6 0.1 0.0023 17.1 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|327310710|ref|YP_004337607.1| - 0.00025 20.9 1.1 0.00025 20.9 1.1 3.4 3 0 0 3 3 3 1 MarR family HTH_Crp_2 PF13545.6 gi|327310710|ref|YP_004337607.1| - 0.00037 20.4 4.2 0.004 17.1 0.3 3.2 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain DUF1495 PF07381.11 gi|327310710|ref|YP_004337607.1| - 0.018 14.9 0.0 0.053 13.4 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_20 PF12840.7 gi|327310710|ref|YP_004337607.1| - 0.027 14.5 5.3 0.068 13.2 1.4 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|327310710|ref|YP_004337607.1| - 0.066 13.6 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_45 PF14947.6 gi|327310710|ref|YP_004337607.1| - 0.073 13.1 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|327310710|ref|YP_004337607.1| - 0.13 12.8 0.2 0.4 11.2 0.2 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain AAA_assoc_C PF09821.9 gi|327310710|ref|YP_004337607.1| - 0.14 12.7 0.0 0.37 11.3 0.0 1.7 1 0 0 1 1 1 0 C-terminal AAA-associated domain TrmB PF01978.19 gi|327310710|ref|YP_004337607.1| - 0.16 11.9 0.4 0.7 9.8 0.4 2.1 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|327310710|ref|YP_004337607.1| - 0.28 10.8 0.9 0.72 9.5 0.2 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding RHH_1 PF01402.21 gi|327310711|ref|YP_004337608.1| - 1.7e-09 37.2 0.9 3.4e-09 36.3 0.9 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|327310711|ref|YP_004337608.1| - 3.6e-05 23.9 0.0 3.7e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|327310711|ref|YP_004337608.1| - 0.035 14.5 0.4 0.041 14.3 0.4 1.1 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Acetyltransf_11 PF13720.6 gi|327310711|ref|YP_004337608.1| - 0.042 14.3 0.2 0.05 14.1 0.2 1.1 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Smoothelin PF12510.8 gi|327310711|ref|YP_004337608.1| - 0.19 11.8 7.5 1.2 9.2 0.4 2.4 3 0 0 3 3 3 0 Smoothelin cytoskeleton protein ATP-synt_ab PF00006.25 gi|327310712|ref|YP_004337609.1| - 8.8e-64 215.1 0.0 1.1e-63 214.7 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|327310712|ref|YP_004337609.1| - 1.4e-08 35.1 1.3 3.6e-08 33.8 1.3 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Rubrerythrin PF02915.17 gi|327310714|ref|YP_004337611.1| - 0.00042 20.7 1.8 0.0012 19.2 1.8 1.8 1 1 0 1 1 1 1 Rubrerythrin Phenol_Hydrox PF02332.18 gi|327310714|ref|YP_004337611.1| - 0.0044 16.6 0.1 0.094 12.2 0.1 2.2 1 1 1 2 2 2 1 Methane/Phenol/Toluene Hydroxylase HTH_28 PF13518.6 gi|327310714|ref|YP_004337611.1| - 0.1 12.7 0.1 0.62 10.2 0.1 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain LacI PF00356.21 gi|327310714|ref|YP_004337611.1| - 0.11 12.4 0.6 0.89 9.4 0.3 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_Tnp_1 PF01527.20 gi|327310714|ref|YP_004337611.1| - 0.12 12.7 1.0 0.18 12.1 0.1 1.9 2 1 0 2 2 2 0 Transposase MoaF PF10703.9 gi|327310714|ref|YP_004337611.1| - 0.13 12.3 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 MoaF N-terminal domain HTH_31 PF13560.6 gi|327310714|ref|YP_004337611.1| - 2.5 8.5 5.7 0.45 10.9 0.2 2.6 3 1 0 3 3 3 0 Helix-turn-helix domain Spermine_synth PF01564.17 gi|327310715|ref|YP_004337612.1| - 4.8e-46 156.5 0.0 7.4e-46 155.9 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|327310715|ref|YP_004337612.1| - 3.4e-10 39.6 0.6 7.1e-10 38.6 0.1 1.8 2 0 0 2 2 2 1 Spermidine synthase tetramerisation domain Methyltransf_12 PF08242.12 gi|327310715|ref|YP_004337612.1| - 0.0001 22.9 0.0 0.00021 22.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310715|ref|YP_004337612.1| - 0.00034 21.3 0.0 0.00066 20.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|327310715|ref|YP_004337612.1| - 0.00072 19.2 0.0 0.0014 18.3 0.0 1.5 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_30 PF05430.11 gi|327310715|ref|YP_004337612.1| - 0.0096 15.8 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.18 gi|327310715|ref|YP_004337612.1| - 0.02 14.2 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase domain Peptidase_S9 PF00326.21 gi|327310716|ref|YP_004337613.1| - 8.1e-37 126.8 0.0 1.1e-36 126.4 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|327310716|ref|YP_004337613.1| - 8.1e-10 38.4 6.7 6.8e-05 22.7 0.0 5.0 5 0 0 5 5 5 2 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|327310716|ref|YP_004337613.1| - 4.4e-09 36.3 0.0 2.8e-06 27.1 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|327310716|ref|YP_004337613.1| - 5.8e-08 32.7 0.0 1.1e-05 25.3 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|327310716|ref|YP_004337613.1| - 1.7e-07 30.8 0.0 0.00015 21.2 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|327310716|ref|YP_004337613.1| - 3.4e-06 27.8 6.6 3.4e-06 27.8 6.6 2.5 2 1 0 2 2 2 1 Alpha/beta hydrolase family LIP PF03583.14 gi|327310716|ref|YP_004337613.1| - 9.9e-06 25.1 0.1 0.19 11.0 0.2 3.1 3 0 0 3 3 3 2 Secretory lipase DLH PF01738.18 gi|327310716|ref|YP_004337613.1| - 0.0001 21.9 0.0 0.00044 19.9 0.0 1.9 1 1 0 1 1 1 1 Dienelactone hydrolase family Esterase PF00756.20 gi|327310716|ref|YP_004337613.1| - 0.0029 17.3 0.0 0.0063 16.2 0.0 1.6 1 0 0 1 1 1 1 Putative esterase Abhydrolase_3 PF07859.13 gi|327310716|ref|YP_004337613.1| - 0.0046 16.8 0.2 0.27 11.0 0.2 2.4 1 1 0 1 1 1 1 alpha/beta hydrolase fold Chlorophyllase2 PF12740.7 gi|327310716|ref|YP_004337613.1| - 0.063 12.2 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase enzyme DUF2118 PF09891.9 gi|327310716|ref|YP_004337613.1| - 0.099 12.6 0.0 1.3 9.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) DUF1610 PF07754.11 gi|327310717|ref|YP_004337614.1| - 1.1e-11 44.5 1.3 3.1e-10 39.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.12 gi|327310717|ref|YP_004337614.1| - 6.1e-05 22.5 3.0 0.0045 16.5 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|327310717|ref|YP_004337614.1| - 0.0017 18.1 0.4 0.95 9.2 0.0 2.1 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|327310717|ref|YP_004337614.1| - 0.0037 17.1 0.9 0.0057 16.5 0.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain tRNA-synt_1f PF01921.18 gi|327310717|ref|YP_004337614.1| - 0.0051 15.8 0.0 0.0051 15.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) zf-Mss51 PF13824.6 gi|327310717|ref|YP_004337614.1| - 0.0053 16.8 2.6 0.37 10.9 0.1 2.1 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin PF00301.20 gi|327310717|ref|YP_004337614.1| - 0.0066 16.4 0.5 2.8 8.1 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin Prim_Zn_Ribbon PF08273.12 gi|327310717|ref|YP_004337614.1| - 0.0083 16.4 1.8 1.2 9.4 0.0 2.1 2 0 0 2 2 2 1 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.6 gi|327310717|ref|YP_004337614.1| - 0.0086 15.8 4.1 0.31 10.8 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Sgf11 PF08209.11 gi|327310717|ref|YP_004337614.1| - 0.01 15.4 2.5 0.046 13.3 0.2 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) zf-H2C2_2 PF13465.6 gi|327310717|ref|YP_004337614.1| - 0.014 15.8 0.5 5.4 7.6 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|327310717|ref|YP_004337614.1| - 0.02 14.8 4.1 0.07 13.1 4.1 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|327310717|ref|YP_004337614.1| - 0.023 14.8 2.1 0.064 13.4 2.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|327310717|ref|YP_004337614.1| - 0.032 13.9 0.4 1.4 8.7 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2 PF00096.26 gi|327310717|ref|YP_004337614.1| - 0.033 14.6 3.8 1.8 9.2 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DZR PF12773.7 gi|327310717|ref|YP_004337614.1| - 0.034 14.2 0.4 0.084 12.9 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|327310717|ref|YP_004337614.1| - 0.035 13.8 2.3 3.3 7.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|327310717|ref|YP_004337614.1| - 0.036 13.5 4.4 0.74 9.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|327310717|ref|YP_004337614.1| - 0.05 13.6 0.3 1.7 8.7 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|327310717|ref|YP_004337614.1| - 0.053 13.5 0.1 0.066 13.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_ligase_ZBD PF03119.16 gi|327310717|ref|YP_004337614.1| - 0.068 13.2 3.2 2.4 8.3 0.7 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.6 gi|327310717|ref|YP_004337614.1| - 0.073 13.7 1.7 0.75 10.5 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-RING_7 PF02591.15 gi|327310717|ref|YP_004337614.1| - 0.087 13.0 1.2 0.49 10.6 0.2 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Elf1 PF05129.13 gi|327310717|ref|YP_004337614.1| - 0.094 12.8 0.8 0.28 11.3 0.8 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.11 gi|327310717|ref|YP_004337614.1| - 0.2 11.6 3.2 2.3 8.2 3.3 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 gi|327310717|ref|YP_004337614.1| - 0.26 11.3 3.5 1.2 9.1 0.2 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-Di19 PF05605.12 gi|327310717|ref|YP_004337614.1| - 0.28 11.5 1.6 21 5.5 0.3 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf_UBZ PF18439.1 gi|327310717|ref|YP_004337614.1| - 0.3 10.7 1.3 6.4 6.5 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|327310717|ref|YP_004337614.1| - 0.44 10.5 5.8 2.1 8.3 5.8 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2HC_2 PF13913.6 gi|327310717|ref|YP_004337614.1| - 0.52 10.3 0.3 0.52 10.3 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2_4 PF13894.6 gi|327310717|ref|YP_004337614.1| - 0.63 11.0 3.6 13 7.0 0.4 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.6 gi|327310717|ref|YP_004337614.1| - 0.68 10.0 2.3 4 7.5 0.1 2.1 1 1 1 2 2 2 0 CpXC protein ADK_lid PF05191.14 gi|327310717|ref|YP_004337614.1| - 2.3 8.3 5.5 14 5.7 5.5 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF3797 PF12677.7 gi|327310717|ref|YP_004337614.1| - 5 7.1 6.5 6.3 6.8 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Rad50_zn_hook PF04423.14 gi|327310717|ref|YP_004337614.1| - 9.4 6.2 7.5 5.6 6.9 1.0 2.2 1 1 1 2 2 2 0 Rad50 zinc hook motif EF1_GNE PF00736.19 gi|327310718|ref|YP_004337615.1| - 5.2e-16 58.6 0.0 5.8e-16 58.4 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain AAA PF00004.29 gi|327310719|ref|YP_004337616.1| - 9.6e-101 333.4 0.0 2.4e-49 167.1 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|327310719|ref|YP_004337616.1| - 4.6e-36 122.4 5.2 8.4e-18 63.9 0.8 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|327310719|ref|YP_004337616.1| - 2.2e-29 101.5 0.4 2.6e-28 98.0 1.8 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|327310719|ref|YP_004337616.1| - 2.9e-16 59.6 0.0 1.8e-07 31.0 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|327310719|ref|YP_004337616.1| - 1e-13 51.7 0.9 0.00018 21.8 0.0 4.6 3 2 2 5 5 4 2 AAA domain AAA_2 PF07724.14 gi|327310719|ref|YP_004337616.1| - 1.5e-13 51.2 0.0 2.1e-07 31.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|327310719|ref|YP_004337616.1| - 8.5e-13 47.9 0.1 2.3e-12 46.5 0.1 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|327310719|ref|YP_004337616.1| - 2.8e-12 47.4 1.6 3.9e-05 24.1 0.0 4.1 3 2 0 4 4 3 2 AAA ATPase domain TIP49 PF06068.13 gi|327310719|ref|YP_004337616.1| - 5.5e-12 45.6 0.2 4.7e-05 22.8 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_5 PF07728.14 gi|327310719|ref|YP_004337616.1| - 9.6e-11 41.8 0.8 0.00078 19.5 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|327310719|ref|YP_004337616.1| - 3.2e-10 40.3 0.0 0.00051 20.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|327310719|ref|YP_004337616.1| - 9.8e-10 38.6 0.0 0.00017 21.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain UFD1 PF03152.14 gi|327310719|ref|YP_004337616.1| - 1.6e-09 37.5 0.0 3e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 IstB_IS21 PF01695.17 gi|327310719|ref|YP_004337616.1| - 2.2e-09 37.3 0.1 0.0046 16.7 0.0 3.3 3 0 0 3 3 3 2 IstB-like ATP binding protein Vps4_C PF09336.10 gi|327310719|ref|YP_004337616.1| - 2.1e-08 34.0 1.7 0.00035 20.5 0.0 3.4 4 0 0 4 4 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|327310719|ref|YP_004337616.1| - 2.1e-08 34.8 0.0 0.0042 17.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|327310719|ref|YP_004337616.1| - 2.6e-08 34.3 0.4 0.0091 16.2 0.0 3.2 4 0 0 4 4 2 2 AAA domain AAA_24 PF13479.6 gi|327310719|ref|YP_004337616.1| - 4.3e-07 29.8 0.0 0.03 14.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|327310719|ref|YP_004337616.1| - 8.8e-07 28.5 0.8 0.043 13.2 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|327310719|ref|YP_004337616.1| - 3.3e-06 27.4 0.0 0.071 13.5 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|327310719|ref|YP_004337616.1| - 1.1e-05 25.2 0.1 0.16 11.7 0.0 3.3 3 1 0 3 3 3 2 Sigma-54 interaction domain PhoH PF02562.16 gi|327310719|ref|YP_004337616.1| - 1.3e-05 24.7 0.2 0.18 11.2 0.0 2.9 2 0 0 2 2 2 2 PhoH-like protein TsaE PF02367.17 gi|327310719|ref|YP_004337616.1| - 2.7e-05 24.2 0.0 0.36 10.9 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|327310719|ref|YP_004337616.1| - 2.8e-05 23.7 0.1 0.24 10.9 0.0 2.9 2 2 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|327310719|ref|YP_004337616.1| - 2.9e-05 23.4 0.0 0.22 10.6 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|327310719|ref|YP_004337616.1| - 4.5e-05 22.8 0.6 0.39 10.0 0.0 2.9 3 0 0 3 3 3 2 Zeta toxin ABC_tran PF00005.27 gi|327310719|ref|YP_004337616.1| - 4.7e-05 23.9 0.0 0.34 11.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter ATPase PF06745.13 gi|327310719|ref|YP_004337616.1| - 7.4e-05 22.2 2.0 0.58 9.5 0.0 3.6 3 1 1 4 4 3 2 KaiC AAA_25 PF13481.6 gi|327310719|ref|YP_004337616.1| - 9e-05 22.1 3.8 1.5 8.4 0.1 4.1 4 0 0 4 4 4 2 AAA domain ATPase_2 PF01637.18 gi|327310719|ref|YP_004337616.1| - 0.00046 20.2 0.2 0.18 11.7 0.1 3.2 2 2 2 4 4 3 1 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|327310719|ref|YP_004337616.1| - 0.00054 19.1 0.1 0.91 8.6 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|327310719|ref|YP_004337616.1| - 0.00077 19.3 0.0 1.7 8.5 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|327310719|ref|YP_004337616.1| - 0.00082 19.2 0.0 0.067 12.9 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase Bac_DnaA PF00308.18 gi|327310719|ref|YP_004337616.1| - 0.0012 18.8 0.0 0.18 11.6 0.0 3.0 2 1 0 2 2 2 1 Bacterial dnaA protein NACHT PF05729.12 gi|327310719|ref|YP_004337616.1| - 0.0014 18.5 0.5 3.3 7.6 0.0 3.2 3 0 0 3 3 3 0 NACHT domain DUF2075 PF09848.9 gi|327310719|ref|YP_004337616.1| - 0.0017 17.6 0.0 0.74 9.0 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 gi|327310719|ref|YP_004337616.1| - 0.0019 18.6 0.0 3.6 8.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|327310719|ref|YP_004337616.1| - 0.0019 17.9 0.3 2.2 8.0 0.0 3.0 2 0 0 2 2 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|327310719|ref|YP_004337616.1| - 0.0047 17.0 0.0 3.7 7.7 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|327310719|ref|YP_004337616.1| - 0.0054 17.1 2.8 4.4 7.6 0.1 3.4 2 1 0 3 3 3 0 AAA domain T2SSE PF00437.20 gi|327310719|ref|YP_004337616.1| - 0.0058 15.7 0.1 3.5 6.6 0.0 3.5 4 0 0 4 4 3 0 Type II/IV secretion system protein AAA_11 PF13086.6 gi|327310719|ref|YP_004337616.1| - 0.0061 16.4 0.0 2.9 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|327310719|ref|YP_004337616.1| - 0.013 15.2 0.0 3 7.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|327310719|ref|YP_004337616.1| - 0.016 14.4 0.0 3.3 6.8 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain IPT PF01745.16 gi|327310719|ref|YP_004337616.1| - 0.017 14.5 0.3 2.5 7.4 0.1 2.4 2 0 0 2 2 2 0 Isopentenyl transferase Guanylate_kin PF00625.21 gi|327310719|ref|YP_004337616.1| - 0.017 14.8 0.3 64 3.2 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase Cytidylate_kin PF02224.18 gi|327310719|ref|YP_004337616.1| - 0.031 14.0 0.2 11 5.7 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|327310719|ref|YP_004337616.1| - 0.036 13.0 0.0 7.7 5.3 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Rad17 PF03215.15 gi|327310719|ref|YP_004337616.1| - 0.059 13.3 0.0 15 5.4 0.0 2.7 2 2 0 2 2 2 0 Rad17 P-loop domain TniB PF05621.11 gi|327310719|ref|YP_004337616.1| - 0.06 12.7 0.0 9.9 5.5 0.0 3.1 4 0 0 4 4 3 0 Bacterial TniB protein Molydop_binding PF01568.21 gi|327310719|ref|YP_004337616.1| - 0.065 13.3 0.1 0.39 10.7 0.2 2.4 2 0 0 2 2 1 0 Molydopterin dinucleotide binding domain ATP-synt_ab PF00006.25 gi|327310719|ref|YP_004337616.1| - 0.073 12.7 0.0 6.6 6.3 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain cobW PF02492.19 gi|327310719|ref|YP_004337616.1| - 0.075 12.6 0.0 13 5.3 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Cytidylate_kin2 PF13189.6 gi|327310719|ref|YP_004337616.1| - 0.094 12.8 0.1 10 6.2 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_29 PF13555.6 gi|327310719|ref|YP_004337616.1| - 0.1 12.3 0.0 22 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SKI PF01202.22 gi|327310719|ref|YP_004337616.1| - 0.12 12.5 0.0 19 5.3 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase NTPase_1 PF03266.15 gi|327310719|ref|YP_004337616.1| - 0.33 10.9 5.8 15 5.4 0.0 4.2 3 2 2 5 5 4 0 NTPase DnaI_N PF07319.11 gi|327310720|ref|YP_004337617.1| - 0.0014 19.2 0.1 0.0014 19.2 0.1 1.2 1 0 0 1 1 1 1 Primosomal protein DnaI N-terminus HTH_42 PF06224.12 gi|327310720|ref|YP_004337617.1| - 0.0086 15.7 0.0 0.0092 15.6 0.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain UBA_2 PF08587.11 gi|327310720|ref|YP_004337617.1| - 0.032 14.3 0.6 0.33 11.1 0.0 2.3 2 1 1 3 3 3 0 Ubiquitin associated domain (UBA) HTH_12 PF08461.10 gi|327310720|ref|YP_004337617.1| - 0.034 14.1 0.6 0.041 13.8 0.6 1.1 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain DUF365 PF04033.12 gi|327310720|ref|YP_004337617.1| - 0.05 13.9 0.4 0.059 13.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF365) DUF4423 PF14394.6 gi|327310720|ref|YP_004337617.1| - 0.056 13.2 0.1 0.09 12.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) SRP54_N PF02881.19 gi|327310720|ref|YP_004337617.1| - 0.2 11.9 2.7 0.46 10.7 0.4 2.2 2 1 0 2 2 2 0 SRP54-type protein, helical bundle domain XPG_I PF00867.18 gi|327310721|ref|YP_004337618.1| - 6.5e-29 100.1 0.0 1.1e-28 99.4 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|327310721|ref|YP_004337618.1| - 4.7e-24 84.8 0.0 8.4e-24 84.0 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|327310721|ref|YP_004337618.1| - 7.5e-05 23.3 0.1 0.0002 21.9 0.0 1.8 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold PEP-utilisers_N PF05524.13 gi|327310721|ref|YP_004337618.1| - 0.0033 17.6 4.6 0.24 11.6 0.8 2.9 3 0 0 3 3 3 2 PEP-utilising enzyme, N-terminal DUF2458 PF10454.9 gi|327310721|ref|YP_004337618.1| - 0.042 13.5 0.1 0.099 12.3 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) DUF2576 PF10845.8 gi|327310721|ref|YP_004337618.1| - 0.1 12.2 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2576) DrsE PF02635.15 gi|327310722|ref|YP_004337619.1| - 0.00011 22.5 0.0 0.00013 22.3 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Abhydrolase_3 PF07859.13 gi|327310723|ref|YP_004337620.1| - 5.8e-76 255.0 1.3 7.9e-76 254.6 1.3 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|327310723|ref|YP_004337620.1| - 1.2e-18 67.3 0.2 2.9e-18 66.1 0.2 1.6 1 1 0 1 1 1 1 Carboxylesterase family Say1_Mug180 PF10340.9 gi|327310723|ref|YP_004337620.1| - 6.9e-09 35.0 0.0 9.3e-09 34.6 0.0 1.1 1 0 0 1 1 1 1 Steryl acetyl hydrolase DLH PF01738.18 gi|327310723|ref|YP_004337620.1| - 0.00028 20.5 0.0 0.078 12.5 0.0 3.2 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|327310723|ref|YP_004337620.1| - 0.00029 19.6 0.1 0.29 9.8 0.0 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Chlorophyllase2 PF12740.7 gi|327310723|ref|YP_004337620.1| - 0.0049 15.8 0.0 0.0071 15.3 0.0 1.2 1 0 0 1 1 1 1 Chlorophyllase enzyme Esterase_phd PF10503.9 gi|327310723|ref|YP_004337620.1| - 0.038 13.5 5.1 0.81 9.1 4.7 3.1 1 1 0 1 1 1 0 Esterase PHB depolymerase Peptidase_S9 PF00326.21 gi|327310723|ref|YP_004337620.1| - 0.093 12.2 0.1 0.16 11.4 0.1 1.6 1 1 0 1 1 1 0 Prolyl oligopeptidase family Esterase PF00756.20 gi|327310723|ref|YP_004337620.1| - 0.22 11.1 0.3 3.3 7.3 0.3 2.1 1 1 0 1 1 1 0 Putative esterase Pyrophosphatase PF00719.19 gi|327310724|ref|YP_004337621.1| - 8.1e-52 175.2 0.0 9.2e-52 175.1 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase G_glu_transpept PF01019.21 gi|327310725|ref|YP_004337622.1| - 3.5e-53 181.1 0.0 1.8e-51 175.5 0.0 2.3 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase PALP PF00291.25 gi|327310726|ref|YP_004337623.1| - 2.6e-61 207.6 1.8 3.1e-61 207.4 1.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.19 gi|327310726|ref|YP_004337623.1| - 0.014 15.4 0.3 0.043 13.8 0.5 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DFP PF04127.15 gi|327310726|ref|YP_004337623.1| - 0.015 15.1 0.5 0.024 14.5 0.5 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein TF_Zn_Ribbon PF08271.12 gi|327310726|ref|YP_004337623.1| - 0.048 13.2 2.6 0.36 10.4 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|327310726|ref|YP_004337623.1| - 0.066 13.2 1.5 4.3 7.3 1.5 2.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|327310726|ref|YP_004337623.1| - 0.12 12.1 4.2 0.2 11.4 4.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain UPF0047 PF01894.17 gi|327310727|ref|YP_004337624.1| - 1.2e-35 122.1 0.0 1.5e-35 121.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AA_permease PF00324.21 gi|327310729|ref|YP_004337626.1| - 7.5e-09 34.7 28.8 1.1e-07 30.9 28.8 2.1 1 1 0 1 1 1 1 Amino acid permease NitrOD5 PF11537.8 gi|327310730|ref|YP_004337627.1| - 0.0024 18.0 0.0 0.0029 17.7 0.0 1.1 1 0 0 1 1 1 1 Nitrosopumilus output domain 5 TENA_THI-4 PF03070.16 gi|327310731|ref|YP_004337628.1| - 4.1e-13 49.6 0.1 5.5e-13 49.2 0.1 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.16 gi|327310732|ref|YP_004337629.1| - 2.2e-44 151.8 0.0 2.6e-44 151.6 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Haem_oxygenas_2 PF14518.6 gi|327310732|ref|YP_004337629.1| - 0.0023 17.8 0.2 0.0033 17.2 0.2 1.4 1 1 0 1 1 1 1 Iron-containing redox enzyme Lactamase_B PF00753.27 gi|327310734|ref|YP_004337631.1| - 1.8e-10 41.2 0.4 2.6e-10 40.6 0.4 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|327310734|ref|YP_004337631.1| - 5.7e-07 29.3 0.0 9.8e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Mannosyl_trans4 PF15971.5 gi|327310734|ref|YP_004337631.1| - 0.019 14.8 0.2 0.031 14.1 0.2 1.3 1 0 0 1 1 1 0 DolP-mannose mannosyltransferase Lactamase_B_3 PF13483.6 gi|327310734|ref|YP_004337631.1| - 0.16 11.9 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain 4HBT PF03061.22 gi|327310735|ref|YP_004337632.1| - 1.7e-16 60.3 1.4 2.3e-16 59.9 1.4 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|327310735|ref|YP_004337632.1| - 4.3e-05 23.9 0.3 6.2e-05 23.4 0.3 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 gi|327310735|ref|YP_004337632.1| - 0.035 14.2 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) Rhomboid PF01694.22 gi|327310736|ref|YP_004337633.1| - 1.9e-15 57.2 10.6 1.9e-15 57.2 10.6 1.6 2 0 0 2 2 2 1 Rhomboid family Ald_Xan_dh_C2 PF02738.18 gi|327310737|ref|YP_004337634.1| - 2.8e-159 531.1 0.3 3.6e-159 530.8 0.3 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|327310737|ref|YP_004337634.1| - 7.3e-24 84.2 1.5 1.5e-22 80.0 0.4 3.0 2 1 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|327310738|ref|YP_004337635.1| - 2.5e-25 88.3 0.1 2.5e-25 88.3 0.1 1.6 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|327310738|ref|YP_004337635.1| - 2.7e-06 27.2 1.7 8.6e-06 25.6 0.1 2.1 1 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|327310738|ref|YP_004337635.1| - 0.0024 17.9 1.3 0.0024 17.9 1.3 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|327310739|ref|YP_004337636.1| - 1.2e-52 178.0 0.0 1.9e-52 177.5 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|327310739|ref|YP_004337636.1| - 2.5e-23 82.2 5.3 3.9e-23 81.6 4.4 1.8 2 0 0 2 2 2 1 CO dehydrogenase flavoprotein C-terminal domain Glu_dehyd_C PF16912.5 gi|327310740|ref|YP_004337637.1| - 9.3e-61 205.0 0.1 1.2e-60 204.7 0.1 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|327310740|ref|YP_004337637.1| - 1.2e-13 50.9 0.0 2.2e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|327310740|ref|YP_004337637.1| - 1.1e-06 28.6 0.1 1.9e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.19 gi|327310740|ref|YP_004337637.1| - 0.001 18.4 0.3 0.0016 17.8 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|327310740|ref|YP_004337637.1| - 0.021 14.1 0.8 0.11 11.7 0.1 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|327310740|ref|YP_004337637.1| - 0.029 14.4 0.0 0.051 13.6 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_8 PF13450.6 gi|327310740|ref|YP_004337637.1| - 0.031 14.5 0.2 0.18 12.0 0.2 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|327310740|ref|YP_004337637.1| - 0.039 13.3 0.2 0.059 12.7 0.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|327310740|ref|YP_004337637.1| - 0.13 11.9 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|327310740|ref|YP_004337637.1| - 0.15 12.5 0.2 0.35 11.3 0.0 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Glyco_transf_20 PF00982.21 gi|327310741|ref|YP_004337638.1| - 1.2e-138 462.8 0.0 1.6e-138 462.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 gi|327310741|ref|YP_004337638.1| - 2.4e-56 190.5 0.0 3.5e-56 189.9 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|327310741|ref|YP_004337638.1| - 2.8e-07 30.5 0.0 0.011 15.4 0.0 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Glycos_transf_1 PF00534.20 gi|327310741|ref|YP_004337638.1| - 0.0047 16.5 0.1 1.1 8.7 0.0 2.4 2 0 0 2 2 2 2 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327310741|ref|YP_004337638.1| - 0.018 15.5 0.1 0.06 13.8 0.1 2.0 1 1 0 1 1 1 0 Glycosyl transferases group 1 HAD PF12710.7 gi|327310741|ref|YP_004337638.1| - 0.11 12.8 0.8 1.3 9.4 0.4 2.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase CoA_transf_3 PF02515.17 gi|327310742|ref|YP_004337639.1| - 3.3e-141 470.7 0.0 3.8e-141 470.5 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III SAM_4 PF18017.1 gi|327310742|ref|YP_004337639.1| - 0.014 15.4 0.0 0.078 13.0 0.0 2.2 2 0 0 2 2 2 0 SAM domain (Sterile alpha motif) Death PF00531.22 gi|327310742|ref|YP_004337639.1| - 0.15 12.2 0.0 3.9 7.7 0.0 2.4 2 0 0 2 2 2 0 Death domain ECH_1 PF00378.20 gi|327310743|ref|YP_004337640.1| - 5.5e-33 114.3 0.0 6.2e-33 114.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|327310743|ref|YP_004337640.1| - 1.3e-17 64.3 0.0 2.1e-17 63.7 0.0 1.5 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Amidase PF01425.21 gi|327310744|ref|YP_004337641.1| - 1.1e-96 324.6 0.2 1.9e-96 323.8 0.2 1.4 1 1 0 1 1 1 1 Amidase HTH_20 PF12840.7 gi|327310745|ref|YP_004337642.1| - 2.5e-12 46.7 0.3 7.1e-12 45.2 0.3 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|327310745|ref|YP_004337642.1| - 1e-07 31.7 0.1 2.1e-07 30.7 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RHH_8 PF17723.1 gi|327310745|ref|YP_004337642.1| - 0.011 15.9 0.4 0.033 14.4 0.2 1.9 2 0 0 2 2 2 0 Ribbon-Helix-Helix transcriptional regulator family HTH_24 PF13412.6 gi|327310745|ref|YP_004337642.1| - 0.015 14.8 0.1 0.045 13.3 0.1 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mrr_N PF14338.6 gi|327310745|ref|YP_004337642.1| - 0.019 15.1 0.0 0.048 13.8 0.0 1.7 1 0 0 1 1 1 0 Mrr N-terminal domain CTP_transf_like PF01467.26 gi|327310746|ref|YP_004337643.1| - 3.7e-11 43.4 0.0 1.7e-10 41.2 0.0 2.0 1 1 0 1 1 1 1 Cytidylyltransferase-like Phosphoesterase PF04185.14 gi|327310747|ref|YP_004337644.1| - 4.4e-64 216.9 0.0 6e-64 216.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoesterase family AAA_14 PF13173.6 gi|327310748|ref|YP_004337645.1| - 0.00067 19.7 0.0 0.0049 16.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327310748|ref|YP_004337645.1| - 0.04 14.2 0.0 13 6.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|327310748|ref|YP_004337645.1| - 0.053 13.4 0.0 0.3 11.0 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|327310748|ref|YP_004337645.1| - 0.07 13.5 2.6 0.45 10.9 0.2 2.7 2 1 1 3 3 3 0 AAA ATPase domain MazG PF03819.17 gi|327310749|ref|YP_004337646.1| - 2.6e-08 33.9 0.5 3.6e-08 33.5 0.5 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|327310749|ref|YP_004337646.1| - 0.00066 19.9 0.1 0.00094 19.4 0.1 1.3 1 1 0 1 1 1 1 MazG-like family dUTPase_2 PF08761.11 gi|327310749|ref|YP_004337646.1| - 0.0057 16.9 0.1 0.089 13.0 0.0 2.0 2 0 0 2 2 2 1 dUTPase FeoB_N PF02421.18 gi|327310750|ref|YP_004337647.1| - 8.2e-27 93.6 0.0 1.1e-26 93.2 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1 PF01926.23 gi|327310750|ref|YP_004337647.1| - 3.1e-19 69.1 0.0 4.6e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Gate PF07670.14 gi|327310750|ref|YP_004337647.1| - 7.1e-14 52.0 24.9 7.8e-13 48.7 6.4 3.2 3 1 0 3 3 3 2 Nucleoside recognition SRPRB PF09439.10 gi|327310750|ref|YP_004337647.1| - 0.002 17.6 0.0 0.003 17.0 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|327310750|ref|YP_004337647.1| - 0.013 15.4 0.0 1.5 8.7 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase Dynamin_N PF00350.23 gi|327310750|ref|YP_004337647.1| - 0.03 14.4 0.0 4.9 7.2 0.0 2.1 1 1 1 2 2 2 0 Dynamin family ABC_tran PF00005.27 gi|327310750|ref|YP_004337647.1| - 0.12 12.9 0.0 0.19 12.3 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Aldo_ket_red PF00248.21 gi|327310751|ref|YP_004337648.1| - 1.4e-36 126.3 0.0 1.6e-36 126.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Glyco_trans_4_4 PF13579.6 gi|327310751|ref|YP_004337648.1| - 0.61 10.5 7.7 18 5.7 7.7 2.4 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain SBP_bac_1 PF01547.25 gi|327310753|ref|YP_004337650.1| - 8.4e-15 55.5 0.4 8.9e-15 55.4 0.4 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|327310753|ref|YP_004337650.1| - 8.4e-11 42.2 0.0 9.7e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|327310753|ref|YP_004337650.1| - 0.0009 18.7 0.1 0.0012 18.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PaREP1 PF05942.11 gi|327310754|ref|YP_004337651.1| - 2.2e-26 92.0 2.9 2.6e-26 91.8 2.9 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ADSL_C PF10397.9 gi|327310754|ref|YP_004337651.1| - 0.17 12.5 2.1 0.35 11.4 2.1 1.9 1 1 0 1 1 1 0 Adenylosuccinate lyase C-terminus TK PF00265.18 gi|327310755|ref|YP_004337652.1| - 2.5e-46 157.8 0.0 2.8e-46 157.6 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase Scytalone_dh PF02982.14 gi|327310755|ref|YP_004337652.1| - 0.017 14.9 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Scytalone dehydratase Mis14 PF08641.12 gi|327310756|ref|YP_004337653.1| - 0.038 14.3 0.6 0.075 13.3 0.6 1.5 1 0 0 1 1 1 0 Kinetochore protein Mis14 like Peptidase_M48 PF01435.18 gi|327310758|ref|YP_004337655.1| - 0.00068 19.5 0.2 0.0015 18.4 0.2 1.5 1 0 0 1 1 1 1 Peptidase family M48 Rab5ip PF07019.12 gi|327310758|ref|YP_004337655.1| - 0.084 13.5 0.2 0.084 13.5 0.2 3.9 4 1 1 5 5 5 0 Rab5-interacting protein (Rab5ip) PaREP1 PF05942.11 gi|327310759|ref|YP_004337656.1| - 8.1e-26 90.2 0.0 9.7e-26 90.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NAD_binding_2 PF03446.15 gi|327310760|ref|YP_004337657.1| - 1.7e-50 171.3 0.0 2.7e-50 170.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|327310760|ref|YP_004337657.1| - 2.9e-27 95.3 0.5 4.1e-27 94.9 0.5 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|327310760|ref|YP_004337657.1| - 5.6e-05 23.6 0.0 0.00014 22.3 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|327310760|ref|YP_004337657.1| - 0.00054 19.4 0.1 0.0011 18.4 0.0 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|327310760|ref|YP_004337657.1| - 0.00055 20.0 0.0 0.0026 17.8 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh PF00984.19 gi|327310760|ref|YP_004337657.1| - 0.018 15.3 0.0 0.046 13.9 0.0 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain ApbA PF02558.16 gi|327310760|ref|YP_004337657.1| - 0.027 14.1 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|327310760|ref|YP_004337657.1| - 0.032 14.1 1.0 0.67 9.8 0.1 2.3 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HEPN PF05168.14 gi|327310761|ref|YP_004337658.1| - 0.00033 20.8 0.1 0.00035 20.7 0.1 1.0 1 0 0 1 1 1 1 HEPN domain MFS_1 PF07690.16 gi|327310763|ref|YP_004337660.1| - 1e-30 106.9 47.3 1e-30 106.9 47.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2417 PF10329.9 gi|327310765|ref|YP_004337662.1| - 0.056 12.8 0.3 0.056 12.8 0.3 2.3 2 0 0 2 2 2 0 Region of unknown function (DUF2417) ABC_tran PF00005.27 gi|327310766|ref|YP_004337663.1| - 3.5e-31 108.6 0.0 5e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310766|ref|YP_004337663.1| - 9.6e-14 51.9 0.0 3.5e-07 30.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|327310766|ref|YP_004337663.1| - 0.00068 19.5 0.0 0.57 9.8 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|327310766|ref|YP_004337663.1| - 0.0008 18.9 0.1 0.39 10.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|327310766|ref|YP_004337663.1| - 0.0014 18.4 0.1 0.0025 17.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SRP54 PF00448.22 gi|327310766|ref|YP_004337663.1| - 0.019 14.6 0.0 0.041 13.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|327310766|ref|YP_004337663.1| - 0.019 15.4 0.5 0.52 10.7 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|327310766|ref|YP_004337663.1| - 0.039 14.3 0.1 0.06 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|327310766|ref|YP_004337663.1| - 0.044 14.3 0.1 0.069 13.6 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|327310766|ref|YP_004337663.1| - 0.061 13.6 0.0 0.16 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|327310766|ref|YP_004337663.1| - 0.084 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Polbeta PF18765.1 gi|327310767|ref|YP_004337664.1| - 6e-09 35.9 0.0 9.3e-09 35.3 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|327310767|ref|YP_004337664.1| - 1e-08 35.4 0.2 1.1e-08 35.2 0.2 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain RlaP PF10127.9 gi|327310767|ref|YP_004337664.1| - 0.00074 19.2 0.5 0.003 17.2 0.5 1.7 1 1 0 1 1 1 1 RNA repair pathway DNA polymerase beta family DUF294 PF03445.13 gi|327310767|ref|YP_004337664.1| - 0.14 11.9 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|327310768|ref|YP_004337665.1| - 1.9e-33 115.1 0.1 2.2e-33 114.9 0.1 1.0 1 0 0 1 1 1 1 HEPN domain HTH_IclR PF09339.10 gi|327310768|ref|YP_004337665.1| - 0.019 14.7 0.1 0.047 13.5 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain SWIM PF04434.17 gi|327310769|ref|YP_004337666.1| - 0.095 12.4 0.7 0.21 11.3 0.7 1.6 1 1 0 1 1 1 0 SWIM zinc finger PhdYeFM_antitox PF02604.19 gi|327310769|ref|YP_004337666.1| - 0.11 12.3 0.2 0.25 11.2 0.2 1.5 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Rieske PF00355.26 gi|327310770|ref|YP_004337667.1| - 1.8e-11 43.8 0.0 2.2e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|327310770|ref|YP_004337667.1| - 5.6e-06 26.2 0.0 7.4e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain DUF234 PF03008.14 gi|327310771|ref|YP_004337668.1| - 1.3e-15 57.7 0.0 2.8e-15 56.6 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|327310771|ref|YP_004337668.1| - 1.8e-14 54.2 0.0 2.3e-12 47.3 0.0 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|327310771|ref|YP_004337668.1| - 3.6e-08 34.0 0.7 7.5e-07 29.7 0.7 2.4 1 1 0 1 1 1 1 AAA ATPase domain HTH_20 PF12840.7 gi|327310771|ref|YP_004337668.1| - 2.7e-05 24.1 0.0 0.00012 22.1 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|327310771|ref|YP_004337668.1| - 0.00026 20.5 0.2 0.0029 17.1 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|327310771|ref|YP_004337668.1| - 0.0016 18.8 0.1 0.018 15.4 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_5 PF01022.20 gi|327310771|ref|YP_004337668.1| - 0.002 18.0 0.1 0.0056 16.5 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family AAA_14 PF13173.6 gi|327310771|ref|YP_004337668.1| - 0.0022 18.0 0.0 0.0034 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_29 PF13551.6 gi|327310771|ref|YP_004337668.1| - 0.0036 17.3 0.0 0.026 14.5 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn helix MarR_2 PF12802.7 gi|327310771|ref|YP_004337668.1| - 0.0037 17.1 0.1 0.015 15.1 0.1 2.1 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.15 gi|327310771|ref|YP_004337668.1| - 0.0044 17.1 0.1 0.011 15.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|327310771|ref|YP_004337668.1| - 0.0058 16.5 0.1 0.019 14.9 0.0 1.9 2 0 0 2 2 2 1 MarR family AAA_22 PF13401.6 gi|327310771|ref|YP_004337668.1| - 0.0099 16.2 0.0 0.021 15.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain HTH_45 PF14947.6 gi|327310771|ref|YP_004337668.1| - 0.01 15.8 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|327310771|ref|YP_004337668.1| - 0.012 15.5 0.5 0.065 13.1 0.2 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB TniB PF05621.11 gi|327310771|ref|YP_004337668.1| - 0.012 15.0 0.0 0.037 13.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial TniB protein DUF4143 PF13635.6 gi|327310771|ref|YP_004337668.1| - 0.013 15.6 0.0 0.028 14.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) HxlR PF01638.17 gi|327310771|ref|YP_004337668.1| - 0.018 14.9 0.0 0.098 12.5 0.0 2.1 3 0 0 3 3 2 0 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.6 gi|327310771|ref|YP_004337668.1| - 0.033 14.2 0.0 0.43 10.6 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|327310771|ref|YP_004337668.1| - 0.13 12.0 1.1 0.37 10.6 0.0 2.3 3 0 0 3 3 2 0 IclR helix-turn-helix domain DUF3501 PF12007.8 gi|327310772|ref|YP_004337669.1| - 1.8e-36 125.9 0.0 2.7e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) Rubrerythrin PF02915.17 gi|327310773|ref|YP_004337670.1| - 6.5e-27 94.6 12.1 2.6e-19 70.0 5.1 2.2 1 1 1 2 2 2 2 Rubrerythrin Ferritin PF00210.24 gi|327310773|ref|YP_004337670.1| - 1.9e-06 27.9 4.0 0.0079 16.1 0.2 2.3 1 1 1 2 2 2 2 Ferritin-like domain DUF892 PF05974.12 gi|327310773|ref|YP_004337670.1| - 0.18 11.8 1.2 0.91 9.5 0.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF892) BtpA PF03437.15 gi|327310775|ref|YP_004337672.1| - 1.8e-75 253.7 0.0 2.1e-75 253.4 0.0 1.0 1 0 0 1 1 1 1 BtpA family CinA_KH PF18146.1 gi|327310775|ref|YP_004337672.1| - 0.91 9.7 2.9 2.4 8.4 0.3 2.2 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain DUF35_N PF12172.8 gi|327310776|ref|YP_004337673.1| - 1.9e-05 24.4 1.2 0.0031 17.3 0.0 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|327310776|ref|YP_004337673.1| - 5.5e-05 23.1 0.5 5.8e-05 23.0 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|327310776|ref|YP_004337673.1| - 0.00017 21.6 2.4 0.0026 17.8 0.1 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.6 gi|327310776|ref|YP_004337673.1| - 0.00032 20.0 1.0 0.0004 19.7 1.0 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|327310776|ref|YP_004337673.1| - 0.00073 19.2 1.6 0.2 11.4 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|327310776|ref|YP_004337673.1| - 0.0013 18.6 0.8 0.82 9.6 0.2 2.1 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS Nudix_N_2 PF14803.6 gi|327310776|ref|YP_004337673.1| - 0.0018 18.1 1.5 0.0025 17.7 1.5 1.2 1 0 0 1 1 1 1 Nudix N-terminal zf-H2C2_2 PF13465.6 gi|327310776|ref|YP_004337673.1| - 0.0035 17.7 3.1 0.22 12.0 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain zf-ribbon_3 PF13248.6 gi|327310776|ref|YP_004337673.1| - 0.0038 16.6 3.7 0.055 12.9 0.6 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|327310776|ref|YP_004337673.1| - 0.0041 17.0 1.8 0.11 12.4 0.3 2.1 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) Zn-C2H2_12 PF18112.1 gi|327310776|ref|YP_004337673.1| - 0.0062 17.0 4.5 0.59 10.7 0.6 2.1 2 0 0 2 2 2 2 Autophagy receptor zinc finger-C2H2 domain NMD3 PF04981.13 gi|327310776|ref|YP_004337673.1| - 0.0088 15.5 0.4 0.0089 15.5 0.4 1.0 1 0 0 1 1 1 1 NMD3 family zf-tcix PF14952.6 gi|327310776|ref|YP_004337673.1| - 0.013 15.1 0.1 0.013 15.1 0.1 2.0 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-LITAF-like PF10601.9 gi|327310776|ref|YP_004337673.1| - 0.016 15.4 3.3 0.81 10.0 0.2 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-C2H2_4 PF13894.6 gi|327310776|ref|YP_004337673.1| - 0.03 15.2 2.0 3.7 8.6 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|327310776|ref|YP_004337673.1| - 0.03 14.8 3.8 0.3 11.6 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_Rg PF17915.1 gi|327310776|ref|YP_004337673.1| - 0.031 13.7 0.2 0.26 10.7 0.1 2.0 2 0 0 2 2 2 0 Reverse gyrase zinc finger OrfB_Zn_ribbon PF07282.11 gi|327310776|ref|YP_004337673.1| - 0.036 14.0 1.2 0.068 13.1 1.2 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-Mss51 PF13824.6 gi|327310776|ref|YP_004337673.1| - 0.036 14.2 0.6 0.044 13.9 0.6 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 YhfH PF14149.6 gi|327310776|ref|YP_004337673.1| - 0.038 14.0 1.8 0.29 11.2 0.4 2.0 1 1 1 2 2 2 0 YhfH-like protein C1_1 PF00130.22 gi|327310776|ref|YP_004337673.1| - 0.04 13.8 0.3 0.047 13.6 0.3 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.21 gi|327310776|ref|YP_004337673.1| - 0.042 14.1 1.4 0.068 13.4 1.4 1.4 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zinc_ribbon_9 PF14369.6 gi|327310776|ref|YP_004337673.1| - 0.046 14.0 0.7 0.059 13.6 0.7 1.2 1 0 0 1 1 1 0 zinc-ribbon DUF2256 PF10013.9 gi|327310776|ref|YP_004337673.1| - 0.049 13.7 1.7 3.6 7.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) Zn-ribbon_8 PF09723.10 gi|327310776|ref|YP_004337673.1| - 0.064 13.4 3.0 4.6 7.4 0.2 2.0 1 1 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|327310776|ref|YP_004337673.1| - 0.071 13.1 3.5 0.82 9.7 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain YacG PF03884.14 gi|327310776|ref|YP_004337673.1| - 0.079 12.7 0.9 3.1 7.6 0.1 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG RecR PF02132.15 gi|327310776|ref|YP_004337673.1| - 0.12 11.9 1.3 9.5 5.9 0.1 2.1 2 0 0 2 2 2 0 RecR protein zf-NADH-PPase PF09297.11 gi|327310776|ref|YP_004337673.1| - 0.14 11.9 3.0 2.4 7.9 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|327310776|ref|YP_004337673.1| - 0.14 11.9 2.3 0.73 9.6 2.3 2.0 1 1 0 1 1 1 0 A2L zinc ribbon domain Prok-RING_1 PF14446.6 gi|327310776|ref|YP_004337673.1| - 0.15 12.0 3.1 0.29 11.1 3.1 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.6 gi|327310776|ref|YP_004337673.1| - 0.16 11.9 3.2 1.2 9.1 2.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|327310776|ref|YP_004337673.1| - 0.17 11.7 2.8 0.84 9.4 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Auto_anti-p27 PF06677.12 gi|327310776|ref|YP_004337673.1| - 0.24 11.6 3.0 9.4 6.5 0.3 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF3797 PF12677.7 gi|327310776|ref|YP_004337673.1| - 0.85 9.6 6.3 0.98 9.4 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-Di19 PF05605.12 gi|327310776|ref|YP_004337673.1| - 1 9.7 4.2 2.7 8.3 0.2 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|327310776|ref|YP_004337673.1| - 1.1 8.9 6.4 3.9 7.1 6.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding MFS_1 PF07690.16 gi|327310778|ref|YP_004337675.1| - 1.9e-05 23.8 56.6 2.4e-05 23.5 23.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PBP PF01161.20 gi|327310780|ref|YP_004337677.1| - 3.3e-37 127.8 0.0 4.1e-37 127.4 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein SpoIIM PF01944.17 gi|327310781|ref|YP_004337678.1| - 4.7e-07 30.0 13.2 8.1e-07 29.2 13.2 1.4 1 1 0 1 1 1 1 Stage II sporulation protein M TssN PF17555.2 gi|327310781|ref|YP_004337678.1| - 0.41 10.0 3.7 0.51 9.7 3.7 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN Baculo_PEP_C PF04513.12 gi|327310783|ref|YP_004337680.1| - 0.001 19.1 0.6 0.001 19.1 0.6 2.4 2 1 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Peptidase_M61 PF05299.12 gi|327310783|ref|YP_004337680.1| - 0.081 13.3 0.6 0.17 12.3 0.1 1.8 2 0 0 2 2 2 0 M61 glycyl aminopeptidase HTH_24 PF13412.6 gi|327310784|ref|YP_004337681.1| - 4.1e-08 32.6 0.0 7.3e-08 31.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|327310784|ref|YP_004337681.1| - 2.8e-07 30.3 0.0 4.4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|327310784|ref|YP_004337681.1| - 7.6e-07 28.9 0.2 1.4e-06 28.1 0.2 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|327310784|ref|YP_004337681.1| - 1.5e-05 24.8 0.0 2.7e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|327310784|ref|YP_004337681.1| - 0.00015 21.5 0.1 0.0003 20.5 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|327310784|ref|YP_004337681.1| - 0.00035 20.6 0.1 0.00067 19.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|327310784|ref|YP_004337681.1| - 0.00047 19.9 0.0 0.00085 19.1 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.6 gi|327310784|ref|YP_004337681.1| - 0.0013 18.4 0.0 0.0022 17.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|327310784|ref|YP_004337681.1| - 0.0016 18.5 0.0 0.0025 17.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.6 gi|327310784|ref|YP_004337681.1| - 0.0019 17.9 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|327310784|ref|YP_004337681.1| - 0.0025 18.0 0.0 0.0043 17.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|327310784|ref|YP_004337681.1| - 0.0032 17.1 0.1 0.0063 16.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|327310784|ref|YP_004337681.1| - 0.0033 17.4 0.0 0.0074 16.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|327310784|ref|YP_004337681.1| - 0.0036 17.4 0.1 0.0063 16.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|327310784|ref|YP_004337681.1| - 0.0041 17.1 0.0 0.011 15.7 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|327310784|ref|YP_004337681.1| - 0.021 15.3 0.0 0.035 14.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|327310784|ref|YP_004337681.1| - 0.022 14.6 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|327310784|ref|YP_004337681.1| - 0.027 14.4 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TPPK_C PF12555.8 gi|327310784|ref|YP_004337681.1| - 5.7 7.1 10.3 0.3 11.2 4.3 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal TRAM PF01938.20 gi|327310785|ref|YP_004337682.1| - 1.6e-13 50.4 3.2 1.9e-13 50.2 3.2 1.1 1 0 0 1 1 1 1 TRAM domain CusF_Ec PF11604.8 gi|327310785|ref|YP_004337682.1| - 0.0073 16.2 0.3 0.24 11.4 0.0 2.1 2 0 0 2 2 2 1 Copper binding periplasmic protein CusF CSD2 PF17876.1 gi|327310785|ref|YP_004337682.1| - 0.16 12.2 5.0 1.7 8.8 0.4 2.1 1 1 1 2 2 2 0 Cold shock domain tRNA-synt_1b PF00579.25 gi|327310786|ref|YP_004337683.1| - 7.9e-31 107.5 0.0 1.6e-30 106.5 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|327310786|ref|YP_004337683.1| - 0.013 14.5 0.0 1.8 7.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) FAM194 PF14977.6 gi|327310786|ref|YP_004337683.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 FAM194 protein COG2 PF06148.11 gi|327310787|ref|YP_004337684.1| - 0.00065 19.8 0.1 0.0011 19.1 0.1 1.4 1 0 0 1 1 1 1 COG (conserved oligomeric Golgi) complex component, COG2 NPV_P10 PF05531.12 gi|327310787|ref|YP_004337684.1| - 0.0024 18.3 0.0 0.0051 17.2 0.0 1.6 1 0 0 1 1 1 1 Nucleopolyhedrovirus P10 protein LPP PF04728.13 gi|327310787|ref|YP_004337684.1| - 0.0052 17.1 0.1 1.6 9.2 0.0 2.3 1 1 0 2 2 2 1 Lipoprotein leucine-zipper DUF1664 PF07889.12 gi|327310787|ref|YP_004337684.1| - 0.0056 16.7 0.1 0.024 14.7 0.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) HHH_8 PF14716.6 gi|327310787|ref|YP_004337684.1| - 0.011 16.1 0.2 0.024 15.0 0.2 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain Apolipoprotein PF01442.18 gi|327310787|ref|YP_004337684.1| - 0.014 15.3 0.1 0.019 14.9 0.1 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain JIP_LZII PF16471.5 gi|327310787|ref|YP_004337684.1| - 0.015 15.4 0.9 2.2 8.5 0.2 2.6 1 1 2 3 3 3 0 JNK-interacting protein leucine zipper II Baculo_PEP_C PF04513.12 gi|327310787|ref|YP_004337684.1| - 0.019 15.0 0.0 0.026 14.6 0.0 1.3 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus CorA PF01544.18 gi|327310787|ref|YP_004337684.1| - 0.032 13.5 0.6 0.035 13.4 0.6 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MIS13 PF08202.11 gi|327310787|ref|YP_004337684.1| - 0.049 12.9 0.0 0.062 12.6 0.0 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family Ax_dynein_light PF10211.9 gi|327310787|ref|YP_004337684.1| - 0.099 12.6 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 Axonemal dynein light chain Sugar_tr PF00083.24 gi|327310788|ref|YP_004337685.1| - 3.3e-25 88.9 19.7 1.1e-24 87.1 19.6 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|327310788|ref|YP_004337685.1| - 3.1e-18 65.8 46.8 3.1e-18 65.8 46.8 1.6 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF1616 PF07760.11 gi|327310788|ref|YP_004337685.1| - 0.025 14.0 0.7 0.064 12.6 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) LAB_N PF07578.11 gi|327310788|ref|YP_004337685.1| - 0.087 12.9 2.2 0.46 10.6 0.0 2.8 3 0 0 3 3 3 0 Lipid A Biosynthesis N-terminal domain ABC_tran PF00005.27 gi|327310789|ref|YP_004337686.1| - 1e-31 110.3 0.0 1.3e-31 109.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310789|ref|YP_004337686.1| - 5.2e-12 46.2 1.4 2e-06 27.8 1.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327310789|ref|YP_004337686.1| - 2e-06 27.4 0.1 7.4e-06 25.6 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|327310789|ref|YP_004337686.1| - 4.2e-06 26.4 0.1 1.1e-05 25.1 0.0 1.6 1 1 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|327310789|ref|YP_004337686.1| - 1.9e-05 25.3 0.8 2.7e-05 24.8 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|327310789|ref|YP_004337686.1| - 0.0001 22.0 0.1 0.00019 21.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|327310789|ref|YP_004337686.1| - 0.00012 22.1 0.1 0.00021 21.2 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|327310789|ref|YP_004337686.1| - 0.0033 17.2 0.0 0.029 14.1 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|327310789|ref|YP_004337686.1| - 0.011 15.8 0.2 0.027 14.6 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|327310789|ref|YP_004337686.1| - 0.013 15.6 0.1 0.015 15.4 0.1 1.4 1 1 0 1 1 1 0 Dynamin family AAA_30 PF13604.6 gi|327310789|ref|YP_004337686.1| - 0.014 15.1 0.2 0.031 14.0 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|327310789|ref|YP_004337686.1| - 0.014 15.7 0.2 0.34 11.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|327310789|ref|YP_004337686.1| - 0.018 13.8 0.3 0.1 11.4 0.2 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|327310789|ref|YP_004337686.1| - 0.024 15.0 0.3 0.04 14.3 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|327310789|ref|YP_004337686.1| - 0.025 15.0 0.2 0.058 13.8 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|327310789|ref|YP_004337686.1| - 0.071 13.4 0.1 2.3 8.5 0.1 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|327310789|ref|YP_004337686.1| - 0.095 12.3 0.1 0.24 10.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain Polysacc_deac_2 PF04748.13 gi|327310789|ref|YP_004337686.1| - 0.11 11.7 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Divergent polysaccharide deacetylase IstB_IS21 PF01695.17 gi|327310789|ref|YP_004337686.1| - 0.11 12.2 0.2 0.26 11.0 0.1 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|327310789|ref|YP_004337686.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TPR_14 PF13428.6 gi|327310789|ref|YP_004337686.1| - 0.14 13.1 0.1 0.32 11.9 0.1 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_28 PF13521.6 gi|327310789|ref|YP_004337686.1| - 0.15 12.3 0.1 0.28 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|327310789|ref|YP_004337686.1| - 0.17 11.8 0.1 0.41 10.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|327310790|ref|YP_004337687.1| - 5.5e-29 101.4 0.0 6.9e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310790|ref|YP_004337687.1| - 3.2e-08 33.7 0.1 4.8e-05 23.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|327310790|ref|YP_004337687.1| - 1.8e-06 27.6 0.0 3.2e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain BCA_ABC_TP_C PF12399.8 gi|327310790|ref|YP_004337687.1| - 6e-06 26.0 0.1 1.4e-05 24.9 0.1 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|327310790|ref|YP_004337687.1| - 6.5e-06 26.8 0.0 1e-05 26.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|327310790|ref|YP_004337687.1| - 9.8e-05 22.2 0.0 0.00015 21.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|327310790|ref|YP_004337687.1| - 0.00019 21.2 0.1 0.00069 19.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|327310790|ref|YP_004337687.1| - 0.0014 17.5 0.7 0.0038 16.1 0.1 1.8 2 0 0 2 2 2 1 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|327310790|ref|YP_004337687.1| - 0.0017 17.5 0.0 0.0025 16.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|327310790|ref|YP_004337687.1| - 0.0019 18.1 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|327310790|ref|YP_004337687.1| - 0.002 17.6 0.1 0.0081 15.6 0.1 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|327310790|ref|YP_004337687.1| - 0.0028 18.1 0.0 0.0037 17.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|327310790|ref|YP_004337687.1| - 0.0048 16.8 0.0 0.0068 16.4 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|327310790|ref|YP_004337687.1| - 0.0076 15.9 0.2 0.04 13.5 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|327310790|ref|YP_004337687.1| - 0.01 16.1 0.0 0.047 14.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|327310790|ref|YP_004337687.1| - 0.015 14.2 0.0 0.022 13.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_7 PF12775.7 gi|327310790|ref|YP_004337687.1| - 0.019 14.5 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|327310790|ref|YP_004337687.1| - 0.02 14.5 0.1 0.037 13.7 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.19 gi|327310790|ref|YP_004337687.1| - 0.024 14.2 0.0 0.04 13.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|327310790|ref|YP_004337687.1| - 0.043 14.0 0.1 0.058 13.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|327310790|ref|YP_004337687.1| - 0.057 13.5 0.5 0.51 10.4 0.5 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA PF00004.29 gi|327310790|ref|YP_004337687.1| - 0.059 13.8 0.0 0.14 12.5 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|327310790|ref|YP_004337687.1| - 0.067 13.5 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|327310790|ref|YP_004337687.1| - 0.087 12.8 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 gi|327310790|ref|YP_004337687.1| - 0.1 12.2 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|327310790|ref|YP_004337687.1| - 0.14 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|327310790|ref|YP_004337687.1| - 0.19 11.5 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain ANF_receptor PF01094.28 gi|327310791|ref|YP_004337688.1| - 1.4e-47 162.5 0.2 1.8e-47 162.2 0.2 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|327310791|ref|YP_004337688.1| - 6.4e-38 131.3 13.6 7.8e-38 131.0 13.6 1.0 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.13 gi|327310791|ref|YP_004337688.1| - 2.6e-07 29.8 0.1 3.7e-07 29.3 0.1 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|327310791|ref|YP_004337688.1| - 6.3e-06 25.4 0.2 0.035 13.1 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain Toprim_3 PF13362.6 gi|327310791|ref|YP_004337688.1| - 0.13 12.6 0.8 11 6.5 0.0 3.1 3 0 0 3 3 3 0 Toprim domain BPD_transp_2 PF02653.16 gi|327310793|ref|YP_004337690.1| - 3e-37 128.3 38.6 3.5e-37 128.0 38.6 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|327310794|ref|YP_004337691.1| - 1.4e-39 135.9 40.3 1.4e-39 135.9 40.3 2.4 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|327310795|ref|YP_004337692.1| - 2.3e-39 136.0 6.9 2.9e-39 135.7 6.9 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|327310795|ref|YP_004337692.1| - 4.5e-39 134.5 0.0 6.3e-39 134.1 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|327310795|ref|YP_004337692.1| - 2.3e-06 26.8 0.3 0.0025 16.9 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain DUF929 PF06053.11 gi|327310795|ref|YP_004337692.1| - 0.089 12.1 0.7 0.2 11.0 0.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF929) OAD_gamma PF04277.13 gi|327310795|ref|YP_004337692.1| - 4.5 7.9 9.1 0.84 10.3 3.0 2.3 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain CBS PF00571.28 gi|327310796|ref|YP_004337693.1| - 3.2e-33 114.0 5.3 2.9e-17 62.8 0.3 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|327310796|ref|YP_004337693.1| - 0.0013 18.9 0.1 0.23 11.8 0.0 2.5 2 0 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain Glyco_hydro_38 PF18438.1 gi|327310796|ref|YP_004337693.1| - 0.0093 16.0 0.1 3.1 7.9 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 38 C-terminal domain 1 DUF3659 PF12396.8 gi|327310796|ref|YP_004337693.1| - 0.13 12.2 0.6 7.5 6.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) Thermopsin PF05317.11 gi|327310797|ref|YP_004337694.1| - 2.9e-55 187.6 0.0 1.3e-54 185.5 0.0 2.1 2 1 1 3 3 3 1 Thermopsin DUF5119 PF17145.4 gi|327310797|ref|YP_004337694.1| - 0.15 12.0 0.1 0.28 11.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5119) EpuA PF11772.8 gi|327310797|ref|YP_004337694.1| - 2 8.2 5.2 0.96 9.2 1.6 2.3 3 0 0 3 3 3 0 DNA-directed RNA polymerase subunit beta Aminotran_1_2 PF00155.21 gi|327310798|ref|YP_004337695.1| - 8.4e-17 61.4 0.0 5.2e-14 52.2 0.0 2.0 2 0 0 2 2 2 2 Aminotransferase class I and II DUF3800 PF12686.7 gi|327310799|ref|YP_004337696.1| - 2e-05 25.2 0.0 4.2e-05 24.2 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) PA14 PF07691.12 gi|327310801|ref|YP_004337698.1| - 0.0017 18.2 0.1 0.0043 16.9 0.0 1.7 2 0 0 2 2 2 1 PA14 domain DUF3301 PF11743.8 gi|327310802|ref|YP_004337699.1| - 0.0015 18.1 0.5 0.0021 17.7 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3301) Pilin_N PF07790.11 gi|327310802|ref|YP_004337699.1| - 0.0038 18.1 2.2 0.0061 17.5 0.7 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Pilin_N PF07790.11 gi|327310803|ref|YP_004337700.1| - 0.0013 19.6 0.6 0.0023 18.8 0.1 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF973 PF06157.11 gi|327310803|ref|YP_004337700.1| - 0.0054 15.8 11.1 0.018 14.1 11.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Arch_flagellin PF01917.16 gi|327310803|ref|YP_004337700.1| - 0.0085 16.3 6.7 0.011 16.0 6.7 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin T2SSF PF00482.23 gi|327310804|ref|YP_004337701.1| - 7.6e-12 45.3 0.6 1.7e-11 44.1 0.6 1.6 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F Flavi_NS4A PF01350.17 gi|327310804|ref|YP_004337701.1| - 0.12 12.3 1.3 0.23 11.4 0.7 1.9 1 1 0 1 1 1 0 Flavivirus non-structural protein NS4A T2SSE PF00437.20 gi|327310805|ref|YP_004337702.1| - 9.4e-50 169.2 0.0 1.4e-49 168.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|327310805|ref|YP_004337702.1| - 7.4e-07 29.8 0.0 1.4e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|327310805|ref|YP_004337702.1| - 4.2e-05 24.1 0.0 9.5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|327310805|ref|YP_004337702.1| - 0.00022 20.9 0.0 0.00044 19.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|327310805|ref|YP_004337702.1| - 0.00047 20.4 0.0 0.002 18.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|327310805|ref|YP_004337702.1| - 0.0011 19.4 0.0 0.0029 18.0 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|327310805|ref|YP_004337702.1| - 0.0014 18.2 0.0 0.0022 17.5 0.0 1.2 1 0 0 1 1 1 1 P-loop containing dynein motor region cobW PF02492.19 gi|327310805|ref|YP_004337702.1| - 0.0014 18.3 0.0 0.0024 17.5 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|327310805|ref|YP_004337702.1| - 0.0014 18.7 0.0 0.0064 16.6 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_21 PF13304.6 gi|327310805|ref|YP_004337702.1| - 0.0032 17.3 0.0 0.0052 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system FtsK_SpoIIIE PF01580.18 gi|327310805|ref|YP_004337702.1| - 0.0033 16.8 0.0 0.011 15.1 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family GTP_EFTU PF00009.27 gi|327310805|ref|YP_004337702.1| - 0.0045 16.6 0.0 0.0086 15.6 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|327310805|ref|YP_004337702.1| - 0.0047 16.9 0.0 0.0081 16.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|327310805|ref|YP_004337702.1| - 0.0087 16.3 0.1 0.036 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|327310805|ref|YP_004337702.1| - 0.019 15.5 0.0 0.051 14.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|327310805|ref|YP_004337702.1| - 0.022 14.5 0.0 0.045 13.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Guanylate_kin PF00625.21 gi|327310805|ref|YP_004337702.1| - 0.024 14.3 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 Guanylate kinase TrwB_AAD_bind PF10412.9 gi|327310805|ref|YP_004337702.1| - 0.025 13.5 0.0 0.041 12.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DEAD PF00270.29 gi|327310805|ref|YP_004337702.1| - 0.036 13.8 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase Dynamin_N PF00350.23 gi|327310805|ref|YP_004337702.1| - 0.043 13.9 0.0 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 Dynamin family Mg_chelatase PF01078.21 gi|327310805|ref|YP_004337702.1| - 0.043 13.2 0.0 0.075 12.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|327310805|ref|YP_004337702.1| - 0.049 13.4 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 gi|327310805|ref|YP_004337702.1| - 0.06 12.6 0.0 0.096 12.0 0.0 1.2 1 0 0 1 1 1 0 Septin AAA_33 PF13671.6 gi|327310805|ref|YP_004337702.1| - 0.07 13.3 0.0 0.19 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|327310805|ref|YP_004337702.1| - 0.071 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|327310805|ref|YP_004337702.1| - 0.078 13.0 0.0 0.2 11.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) PCMT PF01135.19 gi|327310805|ref|YP_004337702.1| - 0.087 12.6 0.1 1.8 8.3 0.0 2.2 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NACHT PF05729.12 gi|327310805|ref|YP_004337702.1| - 0.087 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|327310805|ref|YP_004337702.1| - 0.088 12.9 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|327310805|ref|YP_004337702.1| - 0.089 12.1 0.0 0.21 10.8 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin SRPRB PF09439.10 gi|327310805|ref|YP_004337702.1| - 0.091 12.2 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|327310805|ref|YP_004337702.1| - 0.099 12.9 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SMC_N PF02463.19 gi|327310805|ref|YP_004337702.1| - 0.11 11.9 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain PduV-EutP PF10662.9 gi|327310805|ref|YP_004337702.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.22 gi|327310805|ref|YP_004337702.1| - 0.2 11.2 0.0 0.35 10.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain T2SSF PF00482.23 gi|327310806|ref|YP_004337703.1| - 1.5e-15 57.3 4.9 1.5e-15 57.3 4.9 2.1 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Slx4 PF09494.10 gi|327310807|ref|YP_004337704.1| - 0.0066 16.4 0.0 0.0096 15.9 0.0 1.2 1 0 0 1 1 1 1 Slx4 endonuclease ATPase PF06745.13 gi|327310808|ref|YP_004337705.1| - 1.4e-27 96.5 1.6 1.4e-17 63.9 0.0 4.0 2 2 1 3 3 3 3 KaiC AAA_22 PF13401.6 gi|327310808|ref|YP_004337705.1| - 8.3e-16 58.5 0.0 1.8e-07 31.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|327310808|ref|YP_004337705.1| - 8.6e-12 45.0 5.4 6.3e-07 29.2 0.4 2.9 2 2 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|327310808|ref|YP_004337705.1| - 3.5e-08 33.5 1.4 0.013 15.4 0.5 3.6 2 2 0 2 2 2 2 NACHT domain GvpD PF07088.11 gi|327310808|ref|YP_004337705.1| - 1.1e-07 30.8 0.3 8.8e-07 27.9 0.0 2.3 3 0 0 3 3 3 1 GvpD gas vesicle protein AAA_24 PF13479.6 gi|327310808|ref|YP_004337705.1| - 2.1e-07 30.9 0.0 0.0033 17.2 0.0 3.2 2 1 1 4 4 4 2 AAA domain AAA PF00004.29 gi|327310808|ref|YP_004337705.1| - 3e-07 30.9 0.0 0.0075 16.7 0.0 2.4 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|327310808|ref|YP_004337705.1| - 1.2e-06 28.1 0.8 0.04 13.7 0.6 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|327310808|ref|YP_004337705.1| - 1.5e-06 28.0 1.6 0.0076 16.0 0.0 2.6 2 1 0 2 2 2 2 AAA domain ATPase_2 PF01637.18 gi|327310808|ref|YP_004337705.1| - 2e-06 27.9 0.2 0.0027 17.6 0.0 2.6 3 0 0 3 3 3 2 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|327310808|ref|YP_004337705.1| - 2.4e-06 28.0 0.0 0.041 14.3 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain RecA PF00154.21 gi|327310808|ref|YP_004337705.1| - 1.7e-05 24.4 0.0 0.025 14.0 0.0 2.5 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_14 PF13173.6 gi|327310808|ref|YP_004337705.1| - 2.3e-05 24.5 0.0 0.068 13.2 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|327310808|ref|YP_004337705.1| - 5e-05 23.9 0.9 0.082 13.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|327310808|ref|YP_004337705.1| - 5e-05 23.5 0.1 0.24 11.5 0.0 2.6 2 1 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|327310808|ref|YP_004337705.1| - 7.5e-05 22.3 0.8 0.0098 15.4 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein SRP54 PF00448.22 gi|327310808|ref|YP_004337705.1| - 0.0002 21.0 0.2 0.16 11.6 0.1 2.4 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|327310808|ref|YP_004337705.1| - 0.00024 21.6 1.3 0.073 13.6 0.4 2.4 2 0 0 2 2 2 1 ABC transporter T2SSE PF00437.20 gi|327310808|ref|YP_004337705.1| - 0.00038 19.6 0.4 0.44 9.6 0.3 2.7 2 1 0 2 2 2 2 Type II/IV secretion system protein ATP_bind_1 PF03029.17 gi|327310808|ref|YP_004337705.1| - 0.00063 19.6 0.1 0.63 9.8 0.0 2.4 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|327310808|ref|YP_004337705.1| - 0.0015 19.1 0.1 1.3 9.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|327310808|ref|YP_004337705.1| - 0.0016 17.7 0.2 0.66 9.1 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_5 PF07728.14 gi|327310808|ref|YP_004337705.1| - 0.0018 18.3 0.0 0.17 11.9 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|327310808|ref|YP_004337705.1| - 0.002 18.1 0.9 0.096 12.6 0.1 2.9 3 0 0 3 3 3 1 NTPase APS_kinase PF01583.20 gi|327310808|ref|YP_004337705.1| - 0.0037 17.2 0.2 0.13 12.1 0.0 2.5 3 0 0 3 3 2 1 Adenylylsulphate kinase AAA_7 PF12775.7 gi|327310808|ref|YP_004337705.1| - 0.004 16.7 0.1 0.56 9.7 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|327310808|ref|YP_004337705.1| - 0.0047 17.3 1.3 1.1 9.6 0.0 2.9 3 0 0 3 3 3 1 AAA domain Rad51 PF08423.11 gi|327310808|ref|YP_004337705.1| - 0.0055 16.0 0.7 1.6 7.9 0.0 2.7 2 1 1 3 3 2 1 Rad51 RNA_helicase PF00910.22 gi|327310808|ref|YP_004337705.1| - 0.0066 16.8 0.4 4.2 7.8 0.0 2.3 2 0 0 2 2 2 0 RNA helicase IstB_IS21 PF01695.17 gi|327310808|ref|YP_004337705.1| - 0.0073 16.1 0.4 2.6 7.7 0.0 3.0 3 0 0 3 3 3 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|327310808|ref|YP_004337705.1| - 0.0087 16.0 0.3 1.1 9.2 0.2 2.6 2 0 0 2 2 2 1 RsgA GTPase AAA_21 PF13304.6 gi|327310808|ref|YP_004337705.1| - 0.012 15.4 0.2 0.73 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system ResIII PF04851.15 gi|327310808|ref|YP_004337705.1| - 0.019 15.0 0.5 0.095 12.7 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DnaB_C PF03796.15 gi|327310808|ref|YP_004337705.1| - 0.024 14.0 0.0 0.44 9.8 0.0 2.4 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain cobW PF02492.19 gi|327310808|ref|YP_004337705.1| - 0.024 14.2 0.3 6.8 6.2 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Cytidylate_kin PF02224.18 gi|327310808|ref|YP_004337705.1| - 0.025 14.3 0.7 0.76 9.5 0.1 2.7 3 1 0 3 3 3 0 Cytidylate kinase TsaE PF02367.17 gi|327310808|ref|YP_004337705.1| - 0.031 14.3 1.0 3.8 7.5 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 gi|327310808|ref|YP_004337705.1| - 0.04 14.3 0.3 4.7 7.6 0.0 2.6 2 1 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|327310808|ref|YP_004337705.1| - 0.043 13.3 0.1 2 7.8 0.1 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF2075 PF09848.9 gi|327310808|ref|YP_004337705.1| - 0.07 12.3 0.1 8.8 5.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 gi|327310808|ref|YP_004337705.1| - 0.091 12.5 0.8 8.7 6.1 0.1 2.8 2 1 0 2 2 2 0 DEAD/DEAH box helicase FtsK_SpoIIIE PF01580.18 gi|327310808|ref|YP_004337705.1| - 0.099 12.0 2.8 2.2 7.6 0.0 3.0 3 0 0 3 3 3 0 FtsK/SpoIIIE family KdpD PF02702.17 gi|327310808|ref|YP_004337705.1| - 0.13 11.7 1.7 12 5.3 0.5 2.2 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain TK PF00265.18 gi|327310808|ref|YP_004337705.1| - 0.13 12.1 0.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 Thymidine kinase CbiA PF01656.23 gi|327310808|ref|YP_004337705.1| - 0.14 12.2 1.2 2.6 8.1 0.2 2.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_11 PF13086.6 gi|327310808|ref|YP_004337705.1| - 0.19 11.5 0.0 21 4.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain RuvB_N PF05496.12 gi|327310808|ref|YP_004337705.1| - 0.31 10.8 2.4 12 5.6 0.0 3.5 4 0 0 4 4 4 0 Holliday junction DNA helicase RuvB P-loop domain CobU PF02283.16 gi|327310808|ref|YP_004337705.1| - 0.31 10.6 2.3 25 4.4 0.4 3.2 2 1 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Ammonium_transp PF00909.21 gi|327310809|ref|YP_004337706.1| - 6.5e-73 245.7 25.8 9.3e-73 245.2 25.8 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|327310810|ref|YP_004337707.1| - 2.8e-26 92.1 0.3 3.2e-26 91.9 0.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF190 PF02641.15 gi|327310810|ref|YP_004337707.1| - 4.5e-06 26.9 0.1 5.8e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CdAMP_rec PF06153.11 gi|327310810|ref|YP_004337707.1| - 0.055 13.7 0.6 0.57 10.4 0.6 2.3 1 1 0 1 1 1 0 Cyclic-di-AMP receptor NAD_synthase PF02540.17 gi|327310811|ref|YP_004337708.1| - 3.6e-75 252.2 0.0 4.2e-75 252.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|327310811|ref|YP_004337708.1| - 3.5e-06 26.9 0.0 4.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|327310811|ref|YP_004337708.1| - 9.3e-06 24.7 0.1 0.0083 15.0 0.1 2.3 2 1 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|327310811|ref|YP_004337708.1| - 4.7e-05 23.0 0.0 7e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|327310811|ref|YP_004337708.1| - 0.14 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 PP-loop family ATPase_2 PF01637.18 gi|327310812|ref|YP_004337709.1| - 1.9e-53 181.8 0.0 2.3e-53 181.5 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|327310812|ref|YP_004337709.1| - 0.0058 16.9 0.0 0.0096 16.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain SusF_SusE PF16411.5 gi|327310812|ref|YP_004337709.1| - 0.0077 16.8 0.0 0.012 16.2 0.0 1.3 1 0 0 1 1 1 1 Outer membrane protein SusF_SusE AAA_16 PF13191.6 gi|327310812|ref|YP_004337709.1| - 0.0081 16.6 0.2 0.015 15.7 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain XdhC_CoxI PF02625.16 gi|327310812|ref|YP_004337709.1| - 0.029 14.6 2.7 3.4 7.9 0.2 2.8 2 0 0 2 2 2 0 XdhC and CoxI family AAA_30 PF13604.6 gi|327310812|ref|YP_004337709.1| - 0.075 12.7 0.0 0.16 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|327310812|ref|YP_004337709.1| - 0.1 12.7 0.0 0.2 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AMP-binding PF00501.28 gi|327310813|ref|YP_004337710.1| - 8.6e-88 294.8 0.0 1.1e-87 294.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|327310813|ref|YP_004337710.1| - 3.4e-24 85.6 3.6 6.4e-24 84.7 3.1 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|327310813|ref|YP_004337710.1| - 2.4e-21 75.4 1.0 4.7e-21 74.5 1.0 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus GHMP_kinases_C PF08544.13 gi|327310816|ref|YP_004337713.1| - 0.13 12.6 0.0 0.14 12.5 0.0 1.3 1 1 0 1 1 1 0 GHMP kinases C terminal Methyltransf_23 PF13489.6 gi|327310817|ref|YP_004337714.1| - 1.7e-06 28.0 0.0 3.1e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327310817|ref|YP_004337714.1| - 7e-05 23.5 0.0 0.00016 22.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327310817|ref|YP_004337714.1| - 0.016 15.8 0.0 0.04 14.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310817|ref|YP_004337714.1| - 0.034 14.8 0.0 0.15 12.8 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Fn3-like PF14310.6 gi|327310818|ref|YP_004337715.1| - 0.045 13.9 1.0 7.6 6.7 0.0 2.7 2 0 0 2 2 2 0 Fibronectin type III-like domain FHA PF00498.26 gi|327310819|ref|YP_004337716.1| - 1.2e-13 51.2 0.0 4.5e-13 49.4 0.0 1.9 2 0 0 2 2 2 1 FHA domain Yop-YscD_cpl PF16697.5 gi|327310819|ref|YP_004337716.1| - 1.2e-05 25.5 0.0 1.9e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain VWA PF00092.28 gi|327310820|ref|YP_004337717.1| - 4.8e-16 59.5 0.0 7.9e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|327310820|ref|YP_004337717.1| - 7.7e-13 49.0 0.0 2.7e-12 47.3 0.0 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|327310820|ref|YP_004337717.1| - 2.3e-09 37.4 0.0 5.8e-09 36.1 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain FHA PF00498.26 gi|327310820|ref|YP_004337717.1| - 3.9e-07 30.3 0.0 2.3e-06 27.9 0.0 2.1 2 0 0 2 2 2 1 FHA domain Yop-YscD_cpl PF16697.5 gi|327310820|ref|YP_004337717.1| - 0.00036 20.8 0.0 0.0018 18.6 0.0 2.1 2 0 0 2 2 2 1 Inner membrane component of T3SS, cytoplasmic domain Alpha-amylase_C PF02806.18 gi|327310820|ref|YP_004337717.1| - 0.13 12.8 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain DUF445 PF04286.12 gi|327310821|ref|YP_004337718.1| - 1.5e-07 31.6 0.1 1.4e-05 25.1 0.0 2.5 3 0 0 3 3 3 2 Protein of unknown function (DUF445) CelTOS PF18659.1 gi|327310821|ref|YP_004337718.1| - 0.55 10.7 15.1 0.26 11.8 0.4 4.6 6 0 0 6 6 6 0 Cell-traversal protein for ookinetes and sporozoites DUF3819 PF12842.7 gi|327310821|ref|YP_004337718.1| - 4.4 7.2 5.7 9.1 6.2 1.1 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF3819) Adeno_E1A PF02703.14 gi|327310822|ref|YP_004337719.1| - 0.054 13.1 0.4 0.071 12.7 0.4 1.1 1 0 0 1 1 1 0 Early E1A protein Wzt_C PF14524.6 gi|327310828|ref|YP_004337725.1| - 0.059 13.4 0.0 7.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Wzt C-terminal domain Pilin_N PF07790.11 gi|327310828|ref|YP_004337725.1| - 0.25 12.3 4.6 0.91 10.5 3.2 2.1 1 1 1 2 2 2 0 Archaeal Type IV pilin, N-terminal T2SSE PF00437.20 gi|327310829|ref|YP_004337726.1| - 1.5e-31 109.5 0.0 2.2e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein FHA PF00498.26 gi|327310829|ref|YP_004337726.1| - 1.5e-11 44.5 0.0 3.3e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|327310829|ref|YP_004337726.1| - 5.7e-07 29.8 0.0 3.2e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 Inner membrane component of T3SS, cytoplasmic domain Sigma54_activ_2 PF14532.6 gi|327310829|ref|YP_004337726.1| - 0.024 14.8 0.0 0.061 13.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activat PF00158.26 gi|327310829|ref|YP_004337726.1| - 0.032 13.9 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|327310829|ref|YP_004337726.1| - 0.042 13.4 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|327310829|ref|YP_004337726.1| - 0.2 12.2 0.0 0.47 11.0 0.0 1.6 1 0 0 1 1 1 0 ABC transporter T2SSF PF00482.23 gi|327310830|ref|YP_004337727.1| - 8.9e-13 48.3 8.2 5.9e-11 42.4 1.6 2.9 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF3087 PF11286.8 gi|327310830|ref|YP_004337727.1| - 0.25 10.8 0.8 0.74 9.3 0.8 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) PP2C_2 PF13672.6 gi|327310831|ref|YP_004337728.1| - 1.7e-11 44.2 0.5 3e-11 43.4 0.5 1.4 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|327310831|ref|YP_004337728.1| - 3.6e-07 30.3 0.4 7.1e-07 29.3 0.4 1.5 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) PP2C PF00481.21 gi|327310831|ref|YP_004337728.1| - 0.08 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein phosphatase 2C Pkinase PF00069.25 gi|327310832|ref|YP_004337729.1| - 1.6e-35 122.8 0.0 2e-35 122.4 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|327310832|ref|YP_004337729.1| - 2.9e-19 69.4 0.0 3.5e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.26 gi|327310832|ref|YP_004337729.1| - 3.3e-08 33.8 0.0 6e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 FHA domain APH PF01636.23 gi|327310832|ref|YP_004337729.1| - 0.00098 19.1 0.0 0.025 14.5 0.0 2.0 1 1 1 2 2 2 1 Phosphotransferase enzyme family FTA2 PF13095.6 gi|327310832|ref|YP_004337729.1| - 0.0052 16.4 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 Kinetochore Sim4 complex subunit FTA2 RIO1 PF01163.22 gi|327310832|ref|YP_004337729.1| - 0.082 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 RIO1 family FixG_C PF11614.8 gi|327310833|ref|YP_004337730.1| - 7.2e-05 23.0 2.2 0.011 15.9 0.0 3.7 4 1 1 5 5 5 1 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.11 gi|327310833|ref|YP_004337730.1| - 0.00013 22.2 18.3 0.00084 19.6 2.3 5.0 5 3 0 5 5 5 2 CARDB BsuPI PF12690.7 gi|327310833|ref|YP_004337730.1| - 0.00069 19.6 0.3 2.7 8.1 0.0 3.8 3 1 0 3 3 3 2 Intracellular proteinase inhibitor Transglut_C PF00927.22 gi|327310833|ref|YP_004337730.1| - 0.00077 19.6 0.3 1.5 9.0 0.0 3.1 2 0 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain PKD PF00801.20 gi|327310833|ref|YP_004337730.1| - 0.0012 18.6 1.0 0.0012 18.6 1.0 5.6 4 2 1 5 5 4 2 PKD domain DUF4981 PF16353.5 gi|327310833|ref|YP_004337730.1| - 0.017 15.6 5.7 53 4.4 0.0 5.7 5 1 0 6 6 6 0 Domain of unknown function(DUF4981) ASH PF15780.5 gi|327310833|ref|YP_004337730.1| - 0.024 14.8 3.2 0.59 10.4 0.2 3.1 2 0 0 2 2 2 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin fn3_5 PF06280.12 gi|327310833|ref|YP_004337730.1| - 0.027 15.1 0.5 0.027 15.1 0.5 4.7 3 2 0 3 3 3 0 Fn3-like domain Filamin PF00630.19 gi|327310833|ref|YP_004337730.1| - 0.041 14.7 0.8 4.6 8.1 0.4 3.8 1 1 1 2 2 2 0 Filamin/ABP280 repeat DUF756 PF05506.12 gi|327310833|ref|YP_004337730.1| - 0.043 14.7 6.0 0.26 12.2 0.3 4.1 5 0 0 5 5 3 0 Domain of unknown function (DUF756) DUF11 PF01345.18 gi|327310833|ref|YP_004337730.1| - 0.19 12.0 24.2 1.5 9.2 1.1 5.3 4 1 0 4 4 4 0 Domain of unknown function DUF11 LEA_2 PF03168.13 gi|327310833|ref|YP_004337730.1| - 0.24 11.9 1.7 2.8 8.5 0.2 3.4 3 0 0 3 3 3 0 Late embryogenesis abundant protein A2M_BRD PF07703.14 gi|327310833|ref|YP_004337730.1| - 2.4 8.5 6.5 57 4.0 0.2 3.6 2 1 0 2 2 2 0 Alpha-2-macroglobulin bait region domain Rad51 PF08423.11 gi|327310834|ref|YP_004337731.1| - 2.8e-40 138.2 0.0 3.3e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|327310834|ref|YP_004337731.1| - 7.4e-10 38.6 0.0 1.9e-09 37.2 0.0 1.5 1 1 0 1 1 1 1 KaiC RecA PF00154.21 gi|327310834|ref|YP_004337731.1| - 2.4e-06 27.2 0.0 3.3e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|327310834|ref|YP_004337731.1| - 1e-05 25.2 0.1 1.8e-05 24.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|327310834|ref|YP_004337731.1| - 0.002 17.9 0.0 0.0043 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|327310834|ref|YP_004337731.1| - 0.0055 17.3 0.0 0.017 15.7 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain IcmF-related PF06761.12 gi|327310834|ref|YP_004337731.1| - 0.093 12.2 0.1 0.2 11.1 0.1 1.5 1 0 0 1 1 1 0 Intracellular multiplication and human macrophage-killing AAA PF00004.29 gi|327310834|ref|YP_004337731.1| - 0.13 12.7 0.0 0.34 11.4 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Antimicrobial15 PF08110.12 gi|327310834|ref|YP_004337731.1| - 0.38 11.1 2.1 21 5.6 0.1 2.8 2 0 0 2 2 2 0 Ocellatin family Exonuc_VII_L PF02601.15 gi|327310835|ref|YP_004337732.1| - 0.0026 17.4 5.2 0.0038 16.9 5.2 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit Mito_fiss_reg PF05308.11 gi|327310835|ref|YP_004337732.1| - 0.031 14.3 3.1 0.049 13.7 3.1 1.3 1 0 0 1 1 1 0 Mitochondrial fission regulator Tropomyosin PF00261.20 gi|327310835|ref|YP_004337732.1| - 0.065 12.6 19.1 0.12 11.7 18.4 1.9 1 1 0 1 1 1 0 Tropomyosin Dynein_attach_N PF15867.5 gi|327310835|ref|YP_004337732.1| - 0.29 11.1 13.6 0.72 9.9 0.1 4.1 2 1 1 4 4 4 0 Dynein attachment factor N-terminus DUF4446 PF14584.6 gi|327310835|ref|YP_004337732.1| - 0.54 10.2 5.4 1.3 9.0 0.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) EzrA PF06160.12 gi|327310835|ref|YP_004337732.1| - 0.54 8.4 10.4 0.5 8.5 7.3 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA V_ATPase_I PF01496.19 gi|327310835|ref|YP_004337732.1| - 0.62 7.9 4.5 0.74 7.7 4.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Occludin_ELL PF07303.13 gi|327310835|ref|YP_004337732.1| - 3.6 8.4 9.1 9.9 7.0 5.2 2.6 1 1 2 3 3 3 0 Occludin homology domain AAA_21 PF13304.6 gi|327310835|ref|YP_004337732.1| - 4.4 7.0 11.4 5.7 6.7 11.4 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF4200 PF13863.6 gi|327310835|ref|YP_004337732.1| - 4.8 7.6 24.3 2.7 8.4 17.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Acyl-CoA_dh_1 PF00441.24 gi|327310836|ref|YP_004337733.1| - 8.2e-46 155.9 1.2 2.1e-45 154.6 0.6 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|327310836|ref|YP_004337733.1| - 1.3e-31 109.6 0.9 2.8e-31 108.5 0.9 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|327310836|ref|YP_004337733.1| - 2.3e-22 79.0 0.0 4.3e-22 78.1 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|327310836|ref|YP_004337733.1| - 1.1e-20 74.3 1.7 1.1e-20 74.3 1.7 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|327310837|ref|YP_004337734.1| - 1.4e-34 119.4 3.3 2e-34 119.0 3.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|327310837|ref|YP_004337734.1| - 7.2e-24 84.6 0.2 2.2e-23 83.0 0.1 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|327310837|ref|YP_004337734.1| - 1.2e-17 63.9 0.0 2e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|327310837|ref|YP_004337734.1| - 1.7e-14 54.2 2.1 2.7e-14 53.6 2.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF35_N PF12172.8 gi|327310838|ref|YP_004337735.1| - 9.2e-15 54.2 3.5 1.6e-14 53.4 3.5 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|327310838|ref|YP_004337735.1| - 1.5e-05 24.8 3.9 2.4e-05 24.2 3.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated zf-TFIIB PF13453.6 gi|327310838|ref|YP_004337735.1| - 0.018 14.4 0.6 2.1 7.8 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|327310838|ref|YP_004337735.1| - 2.2 7.8 7.1 4.4 6.9 0.1 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|327310838|ref|YP_004337735.1| - 2.6 7.9 6.4 2.5 7.9 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|327310838|ref|YP_004337735.1| - 7.8 6.6 6.6 13 5.8 0.5 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Thiolase_N PF00108.23 gi|327310839|ref|YP_004337736.1| - 2.6e-23 82.7 7.3 5.6e-23 81.6 6.3 1.9 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|327310839|ref|YP_004337736.1| - 1.9e-09 37.2 0.1 3.6e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|327310839|ref|YP_004337736.1| - 5.5e-06 26.1 0.9 1.1e-05 25.2 0.9 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|327310839|ref|YP_004337736.1| - 0.013 15.6 5.1 0.19 11.8 0.1 3.4 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain FliS PF02561.14 gi|327310839|ref|YP_004337736.1| - 0.14 12.5 0.2 0.35 11.1 0.1 1.7 2 0 0 2 2 2 0 Flagellar protein FliS ACP_syn_III PF08545.10 gi|327310839|ref|YP_004337736.1| - 0.33 10.8 3.2 1.4 8.8 0.6 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CBS PF00571.28 gi|327310840|ref|YP_004337737.1| - 1.3e-23 83.2 2.2 8.8e-11 42.1 0.0 2.1 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.16 gi|327310840|ref|YP_004337737.1| - 0.068 12.8 0.0 0.093 12.3 0.0 1.3 1 1 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding CBS PF00571.28 gi|327310841|ref|YP_004337738.1| - 8.9e-26 90.1 9.1 7.6e-14 51.9 0.9 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|327310841|ref|YP_004337738.1| - 0.15 12.3 1.5 28 5.1 0.0 3.0 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain PEPcase_2 PF14010.6 gi|327310842|ref|YP_004337739.1| - 8.3e-115 384.1 0.1 9.5e-115 383.9 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|327310842|ref|YP_004337739.1| - 0.13 10.3 0.1 0.28 9.2 0.0 1.5 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxylase ADH_zinc_N PF00107.26 gi|327310843|ref|YP_004337740.1| - 1e-31 109.6 3.6 1.7e-31 108.9 3.6 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|327310843|ref|YP_004337740.1| - 8.4e-27 93.2 0.0 8.4e-27 93.2 0.0 2.1 3 0 0 3 3 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|327310843|ref|YP_004337740.1| - 1.7e-13 51.8 0.2 1.7e-13 51.8 0.2 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|327310843|ref|YP_004337740.1| - 1.2e-07 31.5 2.3 1.6e-07 31.1 2.3 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|327310843|ref|YP_004337740.1| - 2.5e-07 30.2 6.9 4.8e-07 29.3 6.9 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|327310843|ref|YP_004337740.1| - 0.00012 21.5 0.4 0.00023 20.6 0.4 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|327310843|ref|YP_004337740.1| - 0.0022 18.2 2.9 0.0038 17.5 2.9 1.4 1 0 0 1 1 1 1 TrkA-N domain Met_10 PF02475.16 gi|327310843|ref|YP_004337740.1| - 0.025 14.3 0.6 0.042 13.6 0.6 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Epimerase PF01370.21 gi|327310843|ref|YP_004337740.1| - 0.047 13.2 0.2 0.067 12.6 0.2 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ELFV_dehydrog PF00208.21 gi|327310843|ref|YP_004337740.1| - 0.051 13.3 0.5 0.087 12.5 0.5 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|327310843|ref|YP_004337740.1| - 0.053 13.8 1.7 0.095 13.0 1.7 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|327310843|ref|YP_004337740.1| - 0.064 12.7 2.2 0.11 12.0 2.2 1.3 1 0 0 1 1 1 0 short chain dehydrogenase 3HCDH_N PF02737.18 gi|327310843|ref|YP_004337740.1| - 0.071 13.0 4.7 0.38 10.6 4.7 2.0 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|327310843|ref|YP_004337740.1| - 0.076 12.7 0.7 0.14 11.8 0.7 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|327310843|ref|YP_004337740.1| - 0.098 12.2 0.6 0.16 11.5 0.6 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PUA PF01472.20 gi|327310843|ref|YP_004337740.1| - 4.2 7.4 11.6 4 7.5 5.0 3.4 2 1 1 3 3 3 0 PUA domain Fer2_3 PF13085.6 gi|327310844|ref|YP_004337741.1| - 2.7e-27 94.9 0.1 3.2e-27 94.7 0.1 1.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|327310844|ref|YP_004337741.1| - 6.6e-08 32.4 0.2 1.2e-07 31.6 0.2 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 gi|327310844|ref|YP_004337741.1| - 0.033 14.0 4.6 0.069 13.0 4.6 1.6 1 1 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Fer2_4 PF13510.6 gi|327310844|ref|YP_004337741.1| - 0.039 14.0 0.1 0.05 13.7 0.1 1.3 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain FAD_binding_2 PF00890.24 gi|327310845|ref|YP_004337742.1| - 5.6e-107 358.4 2.2 6.9e-107 358.1 2.2 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|327310845|ref|YP_004337742.1| - 3.8e-30 104.5 0.0 5.5e-30 104.0 0.0 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|327310845|ref|YP_004337742.1| - 9.1e-05 21.8 0.6 0.00085 18.6 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|327310845|ref|YP_004337742.1| - 0.00013 21.3 1.3 0.00082 18.7 0.6 2.2 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|327310845|ref|YP_004337742.1| - 0.00021 21.0 7.6 0.008 15.8 5.4 3.3 1 1 1 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|327310845|ref|YP_004337742.1| - 0.00057 19.0 0.6 0.00096 18.3 0.6 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|327310845|ref|YP_004337742.1| - 0.011 15.0 0.5 0.018 14.3 0.5 1.2 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|327310845|ref|YP_004337742.1| - 0.017 13.8 0.3 0.07 11.8 0.8 1.7 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.22 gi|327310845|ref|YP_004337742.1| - 0.023 13.8 2.5 0.035 13.2 2.5 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|327310845|ref|YP_004337742.1| - 0.039 13.2 0.4 0.075 12.3 0.4 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|327310845|ref|YP_004337742.1| - 0.059 12.7 2.7 0.12 11.7 2.7 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|327310845|ref|YP_004337742.1| - 0.062 13.5 2.4 0.089 13.0 0.8 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain CBS PF00571.28 gi|327310846|ref|YP_004337743.1| - 1.5e-26 92.5 3.4 2.8e-12 46.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.14 gi|327310846|ref|YP_004337743.1| - 0.0002 21.7 0.0 0.25 11.8 0.0 2.3 2 0 0 2 2 2 2 Ribosomal protein L9, C-terminal domain GGDEF_2 PF17853.1 gi|327310846|ref|YP_004337743.1| - 0.048 13.9 2.8 0.22 11.8 1.6 2.0 1 1 1 2 2 2 0 GGDEF-like domain HpaB_N PF11794.8 gi|327310847|ref|YP_004337744.1| - 7.1e-83 278.4 0.0 1.1e-82 277.8 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|327310847|ref|YP_004337744.1| - 4.4e-66 221.8 0.0 6.2e-66 221.3 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_1 PF00441.24 gi|327310847|ref|YP_004337744.1| - 0.00046 20.4 0.0 0.0011 19.2 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|327310847|ref|YP_004337744.1| - 0.0063 16.7 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Aldedh PF00171.22 gi|327310849|ref|YP_004337746.1| - 1e-155 518.8 0.7 1.3e-155 518.5 0.7 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Wtap PF17098.5 gi|327310849|ref|YP_004337746.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.5 2 0 0 2 2 2 0 WTAP/Mum2p family BRE1 PF08647.11 gi|327310850|ref|YP_004337747.1| - 0.0094 16.0 0.2 0.0097 16.0 0.2 1.0 1 0 0 1 1 1 1 BRE1 E3 ubiquitin ligase HSBP1 PF06825.12 gi|327310850|ref|YP_004337747.1| - 0.054 13.4 2.1 1 9.3 2.1 2.3 1 1 0 1 1 1 0 Heat shock factor binding protein 1 Atg14 PF10186.9 gi|327310851|ref|YP_004337748.1| - 0.0063 15.6 3.2 0.007 15.5 3.2 1.0 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Lzipper-MIP1 PF14389.6 gi|327310851|ref|YP_004337748.1| - 0.016 15.5 0.5 0.022 15.0 0.5 1.2 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 Perilipin PF03036.16 gi|327310851|ref|YP_004337748.1| - 0.025 13.6 0.1 0.026 13.6 0.1 1.0 1 0 0 1 1 1 0 Perilipin family DivIC PF04977.15 gi|327310851|ref|YP_004337748.1| - 0.032 14.0 0.6 0.05 13.4 0.6 1.4 1 0 0 1 1 1 0 Septum formation initiator ZapA PF05164.13 gi|327310851|ref|YP_004337748.1| - 0.04 14.4 0.6 0.057 13.9 0.6 1.2 1 0 0 1 1 1 0 Cell division protein ZapA HSBP1 PF06825.12 gi|327310851|ref|YP_004337748.1| - 0.14 12.0 5.6 5.1 7.0 1.1 2.8 2 1 1 3 3 3 0 Heat shock factor binding protein 1 TMF_DNA_bd PF12329.8 gi|327310851|ref|YP_004337748.1| - 0.44 10.6 6.0 3.9 7.6 6.0 2.1 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding CCDC-167 PF15188.6 gi|327310851|ref|YP_004337748.1| - 0.53 10.7 7.9 0.29 11.5 5.8 1.6 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 XhlA PF10779.9 gi|327310851|ref|YP_004337748.1| - 0.92 9.8 6.3 1.6 9.0 3.3 2.2 2 0 0 2 2 2 0 Haemolysin XhlA BacA PF02673.18 gi|327310852|ref|YP_004337749.1| - 3.3e-45 154.8 18.2 3.8e-45 154.6 18.2 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Glyco_hydro_15 PF00723.21 gi|327310853|ref|YP_004337750.1| - 1.7e-28 99.6 0.1 1.2e-22 80.3 0.2 2.5 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|327310853|ref|YP_004337750.1| - 6.5e-07 28.8 0.1 1.1e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Bac_rhamnosid6H PF17389.2 gi|327310853|ref|YP_004337750.1| - 0.0026 17.1 0.0 0.005 16.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain TPR_14 PF13428.6 gi|327310853|ref|YP_004337750.1| - 0.028 15.2 0.1 0.2 12.6 0.1 2.5 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_4 PF07721.14 gi|327310853|ref|YP_004337750.1| - 0.04 14.5 0.1 0.23 12.2 0.1 2.3 1 0 0 1 1 1 0 Tetratricopeptide repeat PfkB PF00294.24 gi|327310854|ref|YP_004337751.1| - 5.1e-50 170.5 0.0 5.8e-50 170.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DHDPS PF00701.22 gi|327310855|ref|YP_004337752.1| - 1.6e-45 155.1 0.0 1.8e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family MR_MLE_C PF13378.6 gi|327310856|ref|YP_004337753.1| - 2.2e-58 197.4 0.1 3.6e-58 196.7 0.1 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|327310856|ref|YP_004337753.1| - 8.1e-16 58.3 0.0 2.6e-15 56.7 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PP_kinase_C_1 PF17941.1 gi|327310856|ref|YP_004337753.1| - 0.02 14.5 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain 1 DNase-RNase PF02577.14 gi|327310857|ref|YP_004337754.1| - 3e-34 117.5 0.0 3.4e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease fn3_3 PF14686.6 gi|327310857|ref|YP_004337754.1| - 0.0027 17.5 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II AsnC_trans_reg PF01037.21 gi|327310858|ref|YP_004337755.1| - 7.3e-21 73.9 0.0 1.2e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|327310858|ref|YP_004337755.1| - 2e-13 49.9 0.4 3.4e-13 49.2 0.4 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|327310858|ref|YP_004337755.1| - 4.3e-13 48.6 0.5 7.7e-13 47.8 0.5 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|327310858|ref|YP_004337755.1| - 2.8e-06 27.1 0.0 5e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|327310858|ref|YP_004337755.1| - 1e-05 25.3 0.2 2.5e-05 24.1 0.1 1.6 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|327310858|ref|YP_004337755.1| - 8e-05 23.1 0.1 0.00018 21.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|327310858|ref|YP_004337755.1| - 0.0001 22.1 0.2 0.00072 19.5 0.2 2.1 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|327310858|ref|YP_004337755.1| - 0.00093 19.0 0.0 0.0024 17.7 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|327310858|ref|YP_004337755.1| - 0.0073 16.3 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|327310858|ref|YP_004337755.1| - 0.0077 16.2 0.1 0.02 14.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_47 PF16221.5 gi|327310858|ref|YP_004337755.1| - 0.019 14.5 0.1 0.044 13.3 0.1 1.7 1 0 0 1 1 1 0 winged helix-turn-helix HTH_IclR PF09339.10 gi|327310858|ref|YP_004337755.1| - 0.031 14.1 0.0 0.061 13.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|327310858|ref|YP_004337755.1| - 0.033 13.9 0.1 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_34 PF13601.6 gi|327310858|ref|YP_004337755.1| - 0.033 14.4 0.0 0.064 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|327310858|ref|YP_004337755.1| - 0.053 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_DeoR PF08220.12 gi|327310858|ref|YP_004337755.1| - 0.055 13.2 0.1 0.14 11.9 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|327310858|ref|YP_004337755.1| - 0.089 12.3 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|327310858|ref|YP_004337755.1| - 0.091 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_5 PF01022.20 gi|327310858|ref|YP_004337755.1| - 0.097 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RuvB_C PF05491.13 gi|327310858|ref|YP_004337755.1| - 0.11 12.3 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain AsnC_trans_reg PF01037.21 gi|327310860|ref|YP_004337757.1| - 5.6e-17 61.5 0.1 6.1e-17 61.4 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|327310860|ref|YP_004337757.1| - 0.0029 17.6 0.0 0.0041 17.1 0.0 1.2 1 0 0 1 1 1 1 NapD protein HMA PF00403.26 gi|327310860|ref|YP_004337757.1| - 0.0077 16.7 0.1 0.079 13.4 0.0 2.0 1 1 1 2 2 2 2 Heavy-metal-associated domain GYD PF08734.11 gi|327310860|ref|YP_004337757.1| - 0.097 12.6 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 GYD domain GATase_6 PF13522.6 gi|327310861|ref|YP_004337758.1| - 4.9e-08 33.3 0.0 6.9e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|327310861|ref|YP_004337758.1| - 0.0047 15.9 0.4 0.052 12.4 0.4 2.0 1 1 0 1 1 1 1 Glutamine amidotransferases class-II PsbN PF02468.15 gi|327310863|ref|YP_004337760.1| - 0.58 10.0 0.1 0.58 10.0 0.1 3.1 3 0 0 3 3 3 0 Photosystem II reaction centre N protein (psbN) PRA1 PF03208.19 gi|327310863|ref|YP_004337760.1| - 0.85 9.2 6.0 1.4 8.5 5.8 1.7 1 1 0 1 1 1 0 PRA1 family protein MR_MLE_C PF13378.6 gi|327310864|ref|YP_004337761.1| - 1.1e-61 208.2 1.0 3.1e-61 206.8 1.1 1.5 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|327310864|ref|YP_004337761.1| - 1e-11 45.1 0.0 1.8e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PP_kinase_C_1 PF17941.1 gi|327310864|ref|YP_004337761.1| - 0.04 13.5 0.0 0.076 12.6 0.0 1.3 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain 1 MCR_gamma PF02240.16 gi|327310864|ref|YP_004337761.1| - 0.07 12.4 0.0 0.19 10.9 0.0 1.6 2 0 0 2 2 2 0 Methyl-coenzyme M reductase gamma subunit NAD_binding_2 PF03446.15 gi|327310865|ref|YP_004337762.1| - 1.6e-21 77.1 0.2 5.2e-20 72.2 0.0 2.0 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|327310865|ref|YP_004337762.1| - 1.4e-15 57.6 3.3 2.5e-15 56.8 3.3 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 gi|327310865|ref|YP_004337762.1| - 4.2e-08 33.3 1.0 8.7e-08 32.2 0.5 2.0 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|327310865|ref|YP_004337762.1| - 8.1e-07 29.6 0.1 4.3e-06 27.2 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|327310865|ref|YP_004337762.1| - 4e-06 26.3 0.0 7.4e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|327310865|ref|YP_004337762.1| - 0.00015 21.4 0.0 0.00025 20.7 0.0 1.5 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|327310865|ref|YP_004337762.1| - 0.00024 21.3 3.8 0.005 17.1 0.1 3.0 3 1 1 4 4 3 1 TrkA-N domain DapB_N PF01113.20 gi|327310865|ref|YP_004337762.1| - 0.0032 17.6 0.0 0.008 16.3 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_Gly3P_dh_N PF01210.23 gi|327310865|ref|YP_004337762.1| - 0.0033 17.4 0.5 0.034 14.1 0.0 2.5 2 1 1 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF2520 PF10728.9 gi|327310865|ref|YP_004337762.1| - 0.0059 16.4 0.5 1.3 8.8 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF2520) Methyltransf_25 PF13649.6 gi|327310865|ref|YP_004337762.1| - 0.0077 16.9 0.1 4.1 8.2 0.0 3.1 4 0 0 4 4 3 1 Methyltransferase domain DUF1869 PF08956.10 gi|327310865|ref|YP_004337762.1| - 0.03 14.2 0.5 4 7.4 0.0 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF1869) ApbA PF02558.16 gi|327310865|ref|YP_004337762.1| - 0.038 13.6 0.2 0.095 12.3 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DpaA_N PF16924.5 gi|327310865|ref|YP_004337762.1| - 0.074 13.1 0.0 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain Mur_ligase PF01225.25 gi|327310865|ref|YP_004337762.1| - 0.095 13.0 0.1 0.73 10.2 0.0 2.3 2 0 0 2 2 2 0 Mur ligase family, catalytic domain Rho_N PF07498.12 gi|327310865|ref|YP_004337762.1| - 0.16 11.9 0.5 0.73 9.8 0.3 2.2 2 1 0 2 2 1 0 Rho termination factor, N-terminal domain Shikimate_DH PF01488.20 gi|327310865|ref|YP_004337762.1| - 0.16 12.0 0.2 1.5 8.9 0.1 2.5 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|327310865|ref|YP_004337762.1| - 0.19 12.0 0.8 2.1 8.6 0.5 2.6 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_N PF00044.24 gi|327310865|ref|YP_004337762.1| - 0.2 12.0 0.6 0.52 10.7 0.5 1.8 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Methyltransf_11 PF08241.12 gi|327310867|ref|YP_004337764.1| - 7.4e-19 68.2 0.0 1.1e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327310867|ref|YP_004337764.1| - 3.6e-17 62.9 0.0 5.3e-17 62.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327310867|ref|YP_004337764.1| - 6.3e-13 48.9 0.0 7.9e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|327310867|ref|YP_004337764.1| - 9.4e-12 45.0 0.0 1.1e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327310867|ref|YP_004337764.1| - 5.2e-09 36.7 0.0 7.7e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|327310867|ref|YP_004337764.1| - 1.4e-08 34.4 0.0 1.8e-08 34.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|327310867|ref|YP_004337764.1| - 0.00055 19.6 0.0 0.00087 18.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|327310867|ref|YP_004337764.1| - 0.011 15.3 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|327310867|ref|YP_004337764.1| - 0.018 14.4 0.0 0.023 14.1 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|327310867|ref|YP_004337764.1| - 0.046 13.0 0.0 0.063 12.6 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|327310867|ref|YP_004337764.1| - 0.13 11.9 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NOP5NT PF08156.13 gi|327310867|ref|YP_004337764.1| - 0.15 12.4 0.0 0.29 11.6 0.0 1.4 1 0 0 1 1 1 0 NOP5NT (NUC127) domain PBP_like PF12727.7 gi|327310869|ref|YP_004337766.1| - 5.1e-58 195.4 0.1 1.5e-57 193.8 0.1 1.8 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.17 gi|327310869|ref|YP_004337766.1| - 6.6e-46 155.9 0.2 1.6e-45 154.7 0.2 1.7 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|327310869|ref|YP_004337766.1| - 2.3e-25 88.9 0.0 4.8e-25 87.9 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|327310869|ref|YP_004337766.1| - 1.4e-18 66.8 0.1 4.4e-18 65.2 0.1 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|327310869|ref|YP_004337766.1| - 0.0023 17.7 0.0 0.0045 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|327310869|ref|YP_004337766.1| - 0.017 14.7 0.1 0.044 13.4 0.0 1.7 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|327310869|ref|YP_004337766.1| - 0.035 13.5 0.1 0.11 11.9 0.1 1.8 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 T2SSE PF00437.20 gi|327310869|ref|YP_004337766.1| - 0.046 12.8 0.0 0.087 11.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|327310870|ref|YP_004337767.1| - 1.8e-15 57.5 0.0 2.7e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|327310870|ref|YP_004337767.1| - 2.4e-07 30.8 0.0 0.0004 20.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|327310870|ref|YP_004337767.1| - 2.8e-07 31.1 0.6 7.3e-07 29.7 0.4 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|327310870|ref|YP_004337767.1| - 1.8e-06 28.3 0.0 5.5e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain Sulf_transp PF04143.14 gi|327310871|ref|YP_004337768.1| - 2.2e-39 135.9 32.9 2.2e-39 135.9 32.9 1.9 2 0 0 2 2 2 1 Sulphur transport Pox_I5 PF04713.12 gi|327310871|ref|YP_004337768.1| - 0.36 10.9 5.9 0.68 10.0 0.8 3.2 3 0 0 3 3 3 0 Poxvirus protein I5 Phage_holin_2_3 PF16080.5 gi|327310871|ref|YP_004337768.1| - 1.2 8.9 0.0 1.2 8.9 0.0 3.9 5 0 0 5 5 5 0 Bacteriophage holin family HP1 DUF4381 PF14316.6 gi|327310871|ref|YP_004337768.1| - 2.2 8.5 5.4 13 6.0 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) SBD_N PF07005.11 gi|327310872|ref|YP_004337769.1| - 0.093 12.4 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-binding N-terminal domain Glycos_transf_1 PF00534.20 gi|327310873|ref|YP_004337770.1| - 2.7e-26 92.1 0.0 5e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327310873|ref|YP_004337770.1| - 3.2e-09 37.3 0.0 5e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|327310873|ref|YP_004337770.1| - 2.4e-06 27.8 0.0 4.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 HEPN PF05168.14 gi|327310874|ref|YP_004337771.1| - 5.6e-26 91.0 0.1 6.6e-26 90.8 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|327310874|ref|YP_004337771.1| - 0.017 15.0 0.9 0.022 14.7 0.3 1.6 2 0 0 2 2 2 0 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.6 gi|327310874|ref|YP_004337771.1| - 1.9 9.2 6.3 6.3 7.5 1.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) NTP_transf_2 PF01909.23 gi|327310875|ref|YP_004337772.1| - 5e-08 33.1 0.0 5.9e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327310875|ref|YP_004337772.1| - 0.00012 22.1 0.0 0.00027 21.0 0.0 1.5 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|327310875|ref|YP_004337772.1| - 0.052 13.3 0.0 0.075 12.8 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 MFS_1 PF07690.16 gi|327310876|ref|YP_004337773.1| - 1e-56 192.4 83.1 7.8e-49 166.5 47.9 2.7 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|327310876|ref|YP_004337773.1| - 3.7e-11 42.6 8.3 3.7e-11 42.6 8.3 2.3 2 0 0 2 2 2 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|327310876|ref|YP_004337773.1| - 0.00063 18.3 6.8 0.00063 18.3 6.8 2.8 2 1 1 3 3 3 2 Transmembrane secretion effector OATP PF03137.20 gi|327310876|ref|YP_004337773.1| - 0.12 10.7 8.1 0.08 11.2 0.5 3.1 1 1 2 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family DUF3487 PF11990.8 gi|327310876|ref|YP_004337773.1| - 4 7.3 6.9 0.8 9.6 0.9 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) DUF996 PF06195.13 gi|327310877|ref|YP_004337774.1| - 3.4e-28 98.6 19.4 3.4e-28 98.6 19.4 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF3169 PF11368.8 gi|327310877|ref|YP_004337774.1| - 0.096 12.2 10.6 0.032 13.7 7.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) SRTM1 PF15872.5 gi|327310877|ref|YP_004337774.1| - 0.58 10.3 4.7 2.7 8.2 0.2 2.5 2 1 0 2 2 2 0 Serine-rich and transmembrane domain-containing protein 1 DUF1418 PF07214.12 gi|327310877|ref|YP_004337774.1| - 3.2 7.7 6.8 1.6 8.7 1.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1418) DUF373 PF04123.13 gi|327310877|ref|YP_004337774.1| - 4.8 6.5 12.8 7.8 5.8 12.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) SBP_bac_1 PF01547.25 gi|327310879|ref|YP_004337776.1| - 1e-26 94.7 6.5 1.6e-26 94.0 6.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|327310879|ref|YP_004337776.1| - 1.1e-19 71.3 2.5 1.1e-19 71.3 2.5 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|327310879|ref|YP_004337776.1| - 0.00039 20.3 0.0 0.042 13.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|327310880|ref|YP_004337777.1| - 2.1e-15 57.0 26.9 2.1e-15 57.0 26.9 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|327310880|ref|YP_004337777.1| - 5.6 7.2 8.5 0.19 11.9 0.5 2.5 3 0 0 3 3 3 0 N-terminal of TM subunit in PBP-dependent ABC transporters BPD_transp_1 PF00528.22 gi|327310881|ref|YP_004337778.1| - 1.5e-18 67.2 18.7 1.5e-18 67.2 18.7 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Peptidase_S30 PF01577.16 gi|327310882|ref|YP_004337779.1| - 0.3 10.6 0.0 0.43 10.2 0.0 1.1 1 0 0 1 1 1 0 Potyvirus P1 protease ABC_tran PF00005.27 gi|327310883|ref|YP_004337780.1| - 2.1e-19 70.4 0.0 3.3e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310883|ref|YP_004337780.1| - 9.9e-14 51.8 0.0 1.1e-06 28.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327310883|ref|YP_004337780.1| - 1e-05 25.1 0.1 0.12 11.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|327310883|ref|YP_004337780.1| - 0.0015 19.0 0.3 0.0022 18.5 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|327310883|ref|YP_004337780.1| - 0.004 15.9 0.0 0.0079 14.9 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|327310883|ref|YP_004337780.1| - 0.004 16.9 1.4 0.0049 16.6 0.3 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|327310883|ref|YP_004337780.1| - 0.014 15.2 0.0 0.24 11.1 0.1 2.2 2 1 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|327310883|ref|YP_004337780.1| - 0.018 15.0 0.1 0.033 14.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain SbcCD_C PF13558.6 gi|327310883|ref|YP_004337780.1| - 0.03 14.5 0.2 0.11 12.7 0.2 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|327310883|ref|YP_004337780.1| - 0.031 13.1 0.0 0.043 12.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|327310883|ref|YP_004337780.1| - 0.041 13.6 0.3 0.16 11.7 0.2 1.8 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|327310883|ref|YP_004337780.1| - 0.052 11.1 0.3 0.068 10.7 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_28 PF13521.6 gi|327310883|ref|YP_004337780.1| - 0.053 13.8 0.0 0.093 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|327310883|ref|YP_004337780.1| - 0.073 13.5 0.3 0.13 12.6 0.3 1.6 1 1 0 1 1 1 0 AAA ATPase domain Ribosomal_L13 PF00572.18 gi|327310883|ref|YP_004337780.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L13 HHH_2 PF12826.7 gi|327310883|ref|YP_004337780.1| - 0.14 12.3 0.0 0.54 10.4 0.0 1.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif ATPase PF06745.13 gi|327310883|ref|YP_004337780.1| - 0.16 11.3 0.6 10 5.4 0.2 2.2 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.22 gi|327310883|ref|YP_004337780.1| - 0.18 10.9 0.2 0.27 10.4 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 gi|327310883|ref|YP_004337780.1| - 0.25 11.7 0.3 0.61 10.4 0.3 1.6 2 0 0 2 2 2 0 AAA domain Complex1_49kDa PF00346.19 gi|327310885|ref|YP_004337782.1| - 8.1e-64 215.3 0.0 1.2e-63 214.8 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Oxidored_q6 PF01058.22 gi|327310885|ref|YP_004337782.1| - 3.7e-23 81.8 0.3 6.1e-23 81.1 0.3 1.3 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit NiFeSe_Hases PF00374.19 gi|327310885|ref|YP_004337782.1| - 0.13 11.2 0.0 0.19 10.6 0.0 1.2 1 0 0 1 1 1 0 Nickel-dependent hydrogenase Oxidored_q4 PF00507.19 gi|327310886|ref|YP_004337783.1| - 2.5e-05 24.4 0.0 4.3e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4199 PF13858.6 gi|327310886|ref|YP_004337783.1| - 0.22 11.9 2.4 0.29 11.5 2.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) NADHdh PF00146.21 gi|327310887|ref|YP_004337784.1| - 9.5e-70 235.3 18.0 1.2e-69 235.0 18.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|327310888|ref|YP_004337785.1| - 2.4e-16 58.8 14.2 8.6e-09 34.9 2.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|327310888|ref|YP_004337785.1| - 1.6e-13 50.6 18.0 1.8e-10 40.8 9.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327310888|ref|YP_004337785.1| - 1.8e-12 46.8 12.9 2.3e-07 30.6 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327310888|ref|YP_004337785.1| - 7.3e-12 45.7 8.4 2.1e-11 44.2 8.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327310888|ref|YP_004337785.1| - 1.2e-10 41.4 5.7 1.8e-10 40.8 5.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327310888|ref|YP_004337785.1| - 4.2e-10 39.1 12.6 9.8e-06 25.4 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327310888|ref|YP_004337785.1| - 4.4e-10 39.6 27.1 1.5e-06 28.2 9.3 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327310888|ref|YP_004337785.1| - 1.7e-09 38.4 5.0 0.00029 21.7 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|327310888|ref|YP_004337785.1| - 3.1e-09 37.1 1.5 0.0022 18.4 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327310888|ref|YP_004337785.1| - 2e-08 34.6 2.6 0.0029 18.1 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327310888|ref|YP_004337785.1| - 5.2e-07 29.7 12.6 0.00065 20.0 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|327310888|ref|YP_004337785.1| - 4e-06 27.3 8.4 0.0013 19.3 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|327310888|ref|YP_004337785.1| - 8.1e-06 26.5 6.2 0.014 16.1 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|327310888|ref|YP_004337785.1| - 1e-05 26.1 16.8 0.0053 17.6 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|327310888|ref|YP_004337785.1| - 0.00042 20.5 8.1 0.017 15.3 8.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|327310888|ref|YP_004337785.1| - 0.00063 20.5 5.2 0.23 12.3 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain TPP_enzyme_C PF02775.21 gi|327310889|ref|YP_004337786.1| - 3.5e-28 98.3 0.2 4.8e-28 97.9 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|327310889|ref|YP_004337786.1| - 0.018 14.3 0.2 0.73 9.0 0.1 2.3 2 1 0 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|327310890|ref|YP_004337787.1| - 2.8e-64 217.0 1.0 3.7e-64 216.6 1.0 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|327310890|ref|YP_004337787.1| - 3.3e-20 72.3 0.0 7.3e-20 71.2 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|327310890|ref|YP_004337787.1| - 1.2e-11 44.6 0.1 2.7e-11 43.4 0.0 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain HEM4 PF02602.15 gi|327310890|ref|YP_004337787.1| - 0.03 13.7 0.0 0.059 12.7 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD POR PF01558.18 gi|327310891|ref|YP_004337788.1| - 4.1e-27 95.4 0.3 5.3e-27 95.0 0.3 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|327310891|ref|YP_004337788.1| - 1.2e-14 53.4 14.8 1.8e-08 33.8 4.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327310891|ref|YP_004337788.1| - 2.9e-11 43.3 5.4 4.7e-11 42.6 5.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327310891|ref|YP_004337788.1| - 2.2e-10 40.1 14.5 2.2e-06 27.5 2.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327310891|ref|YP_004337788.1| - 1.3e-09 38.5 6.5 2.2e-09 37.7 6.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327310891|ref|YP_004337788.1| - 4.4e-08 33.1 7.1 7.7e-08 32.3 7.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327310891|ref|YP_004337788.1| - 2e-07 31.8 7.8 0.0002 22.2 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|327310891|ref|YP_004337788.1| - 1.5e-06 28.2 8.7 4.3e-05 23.6 10.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|327310891|ref|YP_004337788.1| - 8.6e-06 26.1 5.7 1.4e-05 25.5 5.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327310891|ref|YP_004337788.1| - 1.2e-05 25.1 12.2 0.00073 19.5 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|327310891|ref|YP_004337788.1| - 0.00024 21.6 4.7 0.19 12.3 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|327310891|ref|YP_004337788.1| - 0.0028 18.3 8.6 0.53 11.0 0.8 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|327310891|ref|YP_004337788.1| - 0.028 15.0 11.5 0.41 11.2 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|327310891|ref|YP_004337788.1| - 0.034 14.6 13.7 0.94 10.1 2.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|327310891|ref|YP_004337788.1| - 0.059 13.6 2.6 1.8 8.8 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|327310891|ref|YP_004337788.1| - 0.23 12.5 16.1 0.18 12.8 6.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|327310891|ref|YP_004337788.1| - 0.46 11.4 10.9 0.84 10.5 2.2 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Proton_antipo_M PF00361.20 gi|327310892|ref|YP_004337789.1| - 3.4e-10 39.6 11.7 2.7e-08 33.4 6.6 2.6 1 1 1 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|327310893|ref|YP_004337790.1| - 1.2e-25 90.4 11.7 2.8e-25 89.1 11.7 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|327310894|ref|YP_004337791.1| - 6.7e-28 97.7 21.2 2.4e-24 86.1 11.1 2.4 2 0 0 2 2 2 2 Proton-conducting membrane transporter Oxidored_q2 PF00420.24 gi|327310895|ref|YP_004337792.1| - 0.00044 19.8 2.5 0.00063 19.4 2.5 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YtpI PF14007.6 gi|327310895|ref|YP_004337792.1| - 0.045 13.9 0.8 0.045 13.9 0.8 1.4 2 0 0 2 2 2 0 YtpI-like protein PT-VENN PF04829.13 gi|327310895|ref|YP_004337792.1| - 8.6 6.5 9.1 20 5.4 0.2 2.2 1 1 1 2 2 2 0 Pre-toxin domain with VENN motif DUF2070 PF09843.9 gi|327310896|ref|YP_004337793.1| - 0.022 13.1 6.6 0.024 12.9 6.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF981 PF06168.11 gi|327310896|ref|YP_004337793.1| - 0.15 12.0 9.1 0.24 11.3 9.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF981) Oxidored_q3 PF00499.20 gi|327310896|ref|YP_004337793.1| - 0.17 11.6 12.3 0.23 11.2 11.6 1.6 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HMGL-like PF00682.19 gi|327310898|ref|YP_004337795.1| - 6.7e-55 186.5 0.0 9.8e-55 185.9 0.0 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|327310898|ref|YP_004337795.1| - 8.2e-28 97.0 0.0 1.5e-27 96.1 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain PEP_mutase PF13714.6 gi|327310898|ref|YP_004337795.1| - 0.049 13.1 0.2 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Drf_GBD PF06371.13 gi|327310900|ref|YP_004337797.1| - 0.044 13.4 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Diaphanous GTPase-binding Domain RGP PF03214.13 gi|327310900|ref|YP_004337797.1| - 0.18 10.9 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Reversibly glycosylated polypeptide T6SS_VipA PF05591.12 gi|327310900|ref|YP_004337797.1| - 0.43 10.4 5.9 4.6 7.0 2.7 2.5 1 1 1 2 2 2 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 Nif11 PF07862.11 gi|327310900|ref|YP_004337797.1| - 2.8 8.3 6.2 32 4.9 0.5 3.5 3 1 0 3 3 3 0 Nif11 domain Fes1 PF08609.10 gi|327310900|ref|YP_004337797.1| - 4.2 8.3 7.6 23 5.9 3.5 2.4 1 1 1 2 2 2 0 Nucleotide exchange factor Fes1 Oxidored_molyb PF00174.19 gi|327310901|ref|YP_004337798.1| - 1e-30 106.6 0.0 1.3e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain UbiA PF01040.18 gi|327310902|ref|YP_004337799.1| - 1e-36 126.6 26.9 1.5e-36 126.0 26.9 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family TOM6p PF15184.6 gi|327310902|ref|YP_004337799.1| - 3.1 7.6 9.2 2.6 7.9 0.2 3.4 3 1 1 4 4 4 0 Mitochondrial import receptor subunit TOM6 homolog ADH_zinc_N PF00107.26 gi|327310903|ref|YP_004337800.1| - 6.7e-26 90.8 2.3 1.1e-25 90.1 2.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|327310903|ref|YP_004337800.1| - 1e-24 86.5 1.4 1.8e-24 85.7 0.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|327310903|ref|YP_004337800.1| - 2.2e-19 70.8 0.9 4.5e-19 69.8 0.9 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|327310903|ref|YP_004337800.1| - 0.0077 15.5 2.0 0.013 14.9 2.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|327310903|ref|YP_004337800.1| - 0.064 12.7 1.6 0.12 11.8 1.6 1.5 1 0 0 1 1 1 0 short chain dehydrogenase NmrA PF05368.13 gi|327310903|ref|YP_004337800.1| - 0.068 12.7 1.0 0.5 9.9 1.7 1.9 2 0 0 2 2 2 0 NmrA-like family TrkA_N PF02254.18 gi|327310903|ref|YP_004337800.1| - 0.069 13.4 0.0 0.17 12.2 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Nitro_FeMo-Co PF02579.17 gi|327310903|ref|YP_004337800.1| - 0.11 12.9 1.3 3.2 8.2 0.1 2.4 2 0 0 2 2 2 0 Dinitrogenase iron-molybdenum cofactor CPBP PF02517.16 gi|327310904|ref|YP_004337801.1| - 3.3e-12 46.6 2.1 3.3e-12 46.6 2.1 2.5 1 1 1 2 2 2 1 CPBP intramembrane metalloprotease ATPase_2 PF01637.18 gi|327310905|ref|YP_004337802.1| - 2.7e-12 47.1 0.0 4.3e-12 46.5 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|327310905|ref|YP_004337802.1| - 5.6e-09 36.1 0.0 0.00024 21.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|327310905|ref|YP_004337802.1| - 1.7e-08 35.0 0.9 3e-08 34.3 0.9 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|327310905|ref|YP_004337802.1| - 7.6e-06 26.2 0.0 1.5e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4777 PF16007.5 gi|327310905|ref|YP_004337802.1| - 0.13 12.6 0.0 0.3 11.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) DUF4423 PF14394.6 gi|327310905|ref|YP_004337802.1| - 0.2 11.4 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Pyr_redox_2 PF07992.14 gi|327310906|ref|YP_004337803.1| - 2.3e-53 181.3 9.4 3.3e-53 180.8 9.4 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|327310906|ref|YP_004337803.1| - 3.1e-18 66.0 0.0 1.2e-17 64.2 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|327310906|ref|YP_004337803.1| - 8.5e-17 61.4 0.4 1.4e-12 47.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|327310906|ref|YP_004337803.1| - 2.9e-15 56.3 20.5 3.4e-12 46.2 1.0 3.5 3 1 1 4 4 4 2 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|327310906|ref|YP_004337803.1| - 3.7e-12 46.6 10.3 7.3e-10 39.3 2.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|327310906|ref|YP_004337803.1| - 1.4e-09 37.8 2.7 1.4e-09 37.8 2.7 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|327310906|ref|YP_004337803.1| - 2.5e-05 23.5 13.9 0.00021 20.5 6.6 3.7 2 1 2 4 4 4 2 FAD binding domain HI0933_like PF03486.14 gi|327310906|ref|YP_004337803.1| - 0.00047 19.0 2.3 0.00047 19.0 2.3 3.3 5 0 0 5 5 5 1 HI0933-like protein K_oxygenase PF13434.6 gi|327310906|ref|YP_004337803.1| - 0.0016 17.6 0.6 0.0042 16.3 0.0 1.8 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|327310906|ref|YP_004337803.1| - 0.0017 17.7 10.4 0.0029 16.9 1.7 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|327310906|ref|YP_004337803.1| - 0.03 13.6 3.1 0.14 11.4 0.5 2.3 2 0 0 2 2 2 0 Thi4 family XdhC_C PF13478.6 gi|327310906|ref|YP_004337803.1| - 0.042 14.4 1.2 2.6 8.6 0.1 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|327310906|ref|YP_004337803.1| - 0.048 14.1 3.6 2.8 8.5 0.3 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding ETF PF01012.21 gi|327310906|ref|YP_004337803.1| - 0.058 13.3 3.2 0.3 10.9 0.7 2.4 2 0 0 2 2 2 0 Electron transfer flavoprotein domain 2-Hacid_dh_C PF02826.19 gi|327310906|ref|YP_004337803.1| - 0.19 11.1 1.3 10 5.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|327310906|ref|YP_004337803.1| - 0.27 10.2 19.4 0.68 8.9 3.6 3.3 2 2 1 3 3 3 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|327310906|ref|YP_004337803.1| - 0.32 10.2 7.5 2.5 7.3 1.1 2.2 2 0 0 2 2 2 0 FAD binding domain Bac_A_amyl_C PF18612.1 gi|327310906|ref|YP_004337803.1| - 1.3 8.8 4.4 0.79 9.5 0.1 2.8 3 1 0 3 3 3 0 Bacterial Alpha amylase C-terminal domain DFP PF04127.15 gi|327310906|ref|YP_004337803.1| - 2.1 8.1 3.7 12 5.7 0.4 2.4 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein E1-E2_ATPase PF00122.20 gi|327310907|ref|YP_004337804.1| - 2.4e-55 186.9 0.4 2.4e-55 186.9 0.4 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|327310907|ref|YP_004337804.1| - 8.6e-49 166.7 4.9 8.6e-49 166.7 4.9 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|327310907|ref|YP_004337804.1| - 1.7e-12 47.6 0.0 3.2e-11 43.5 0.0 2.7 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|327310907|ref|YP_004337804.1| - 8.4e-08 32.3 0.1 0.00026 20.8 0.1 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|327310907|ref|YP_004337804.1| - 1.8e-06 28.5 0.5 7.6e-06 26.5 0.5 2.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|327310907|ref|YP_004337804.1| - 0.059 13.5 0.0 0.4 10.8 0.0 2.4 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase LytR_C PF13399.6 gi|327310907|ref|YP_004337804.1| - 0.075 14.0 7.0 9.1 7.3 2.2 3.8 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator HAD_2 PF13419.6 gi|327310907|ref|YP_004337804.1| - 0.2 11.7 0.0 0.55 10.3 0.0 1.6 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DrsE PF02635.15 gi|327310908|ref|YP_004337805.1| - 2.4e-17 63.4 0.0 2.7e-17 63.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|327310908|ref|YP_004337805.1| - 0.098 12.5 0.0 0.14 12.0 0.0 1.3 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family phiKZ_IP PF12699.7 gi|327310910|ref|YP_004337807.1| - 0.0027 16.9 0.5 0.0031 16.7 0.5 1.0 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins Fmp27_WPPW PF10359.9 gi|327310910|ref|YP_004337807.1| - 0.0084 15.0 0.1 0.0089 14.9 0.1 1.0 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain DASH_Spc19 PF08287.11 gi|327310910|ref|YP_004337807.1| - 0.0087 16.0 0.5 0.01 15.7 0.5 1.1 1 0 0 1 1 1 1 Spc19 Syntaxin-6_N PF09177.11 gi|327310910|ref|YP_004337807.1| - 0.013 16.1 0.5 0.021 15.4 0.5 1.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Troponin PF00992.20 gi|327310910|ref|YP_004337807.1| - 0.027 14.8 1.7 0.031 14.6 1.7 1.1 1 0 0 1 1 1 0 Troponin Jnk-SapK_ap_N PF09744.9 gi|327310910|ref|YP_004337807.1| - 0.031 14.5 0.6 0.038 14.2 0.6 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 BLOC1_2 PF10046.9 gi|327310910|ref|YP_004337807.1| - 0.032 14.5 0.2 0.04 14.2 0.2 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.8 gi|327310910|ref|YP_004337807.1| - 0.038 14.1 0.2 0.044 13.9 0.2 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Nup54 PF13874.6 gi|327310910|ref|YP_004337807.1| - 0.041 14.0 0.1 0.051 13.7 0.1 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Prefoldin_2 PF01920.20 gi|327310910|ref|YP_004337807.1| - 0.042 13.8 1.2 1.6 8.8 0.0 2.0 1 1 1 2 2 2 0 Prefoldin subunit DUF4407 PF14362.6 gi|327310910|ref|YP_004337807.1| - 0.043 13.2 0.8 0.046 13.1 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ABC_tran_CTD PF16326.5 gi|327310910|ref|YP_004337807.1| - 0.054 13.7 3.5 0.076 13.3 0.1 2.0 1 1 1 2 2 2 0 ABC transporter C-terminal domain DUF2959 PF11172.8 gi|327310910|ref|YP_004337807.1| - 0.083 13.0 1.3 0.097 12.8 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) DUF3287 PF11690.8 gi|327310910|ref|YP_004337807.1| - 0.14 11.9 0.1 0.14 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) DUF1690 PF07956.11 gi|327310910|ref|YP_004337807.1| - 0.24 11.8 3.2 0.34 11.3 3.2 1.3 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) XhlA PF10779.9 gi|327310910|ref|YP_004337807.1| - 0.27 11.4 1.0 7.1 6.9 0.1 2.2 1 1 1 2 2 2 0 Haemolysin XhlA PSK_trans_fac PF07704.11 gi|327310910|ref|YP_004337807.1| - 1.3 9.8 10.0 7.3 7.4 10.0 1.9 1 1 0 1 1 1 0 Rv0623-like transcription factor Histone_HNS PF00816.21 gi|327310910|ref|YP_004337807.1| - 1.9 9.4 4.9 3.7 8.4 5.0 1.4 1 1 0 1 1 1 0 H-NS histone family adh_short_C2 PF13561.6 gi|327310911|ref|YP_004337808.1| - 2.8e-36 125.2 0.0 3.6e-36 124.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|327310911|ref|YP_004337808.1| - 5.9e-32 110.7 0.0 7.2e-32 110.4 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|327310911|ref|YP_004337808.1| - 4e-07 30.1 0.2 4.8e-07 29.8 0.2 1.1 1 0 0 1 1 1 1 NAD(P)H-binding ADH_zinc_N PF00107.26 gi|327310911|ref|YP_004337808.1| - 0.00035 20.6 0.3 0.0022 18.0 0.1 2.2 2 1 0 2 2 2 1 Zinc-binding dehydrogenase KR PF08659.10 gi|327310911|ref|YP_004337808.1| - 0.00038 20.4 0.3 0.0018 18.3 0.3 1.8 1 1 0 1 1 1 1 KR domain DUF3866 PF12982.7 gi|327310911|ref|YP_004337808.1| - 0.068 12.3 0.1 0.11 11.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3866) NmrA PF05368.13 gi|327310911|ref|YP_004337808.1| - 0.14 11.7 0.1 0.79 9.2 0.0 2.1 3 0 0 3 3 3 0 NmrA-like family Lyase_1 PF00206.20 gi|327310912|ref|YP_004337809.1| - 2.7e-83 279.9 0.0 4.3e-83 279.3 0.0 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|327310912|ref|YP_004337809.1| - 0.0072 16.7 0.1 0.026 14.9 0.1 2.0 1 0 0 1 1 1 1 Fumarase C C-terminus Haem_degrading PF03928.14 gi|327310913|ref|YP_004337810.1| - 2.7e-08 33.9 0.0 2.9e-08 33.8 0.0 1.0 1 0 0 1 1 1 1 Haem-degrading TruB_C PF09142.11 gi|327310913|ref|YP_004337810.1| - 0.019 14.7 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal ADH_N PF08240.12 gi|327310914|ref|YP_004337811.1| - 7.8e-27 93.3 0.7 1.3e-26 92.6 0.7 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|327310914|ref|YP_004337811.1| - 2.4e-19 69.6 1.8 4.1e-19 68.9 0.1 2.2 2 1 1 3 3 3 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|327310914|ref|YP_004337811.1| - 2.5e-15 57.7 0.1 5.1e-15 56.7 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|327310914|ref|YP_004337811.1| - 0.00014 21.7 0.0 0.00031 20.6 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Semialdhyde_dh PF01118.24 gi|327310914|ref|YP_004337811.1| - 0.00063 20.2 0.5 0.004 17.6 0.0 2.1 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain NmrA PF05368.13 gi|327310914|ref|YP_004337811.1| - 0.027 14.0 0.2 0.027 14.0 0.2 1.6 2 0 0 2 2 2 0 NmrA-like family DapB_N PF01113.20 gi|327310914|ref|YP_004337811.1| - 0.029 14.5 0.0 0.18 12.0 0.0 2.1 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.21 gi|327310914|ref|YP_004337811.1| - 0.03 14.1 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.6 gi|327310914|ref|YP_004337811.1| - 0.048 13.5 0.4 0.11 12.4 0.2 1.7 2 0 0 2 2 2 0 NAD(P)H-binding Epimerase PF01370.21 gi|327310914|ref|YP_004337811.1| - 0.065 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|327310914|ref|YP_004337811.1| - 0.12 11.8 0.1 0.33 10.3 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NADH_4Fe-4S PF10589.9 gi|327310914|ref|YP_004337811.1| - 0.14 12.3 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FAA_hydrolase PF01557.18 gi|327310915|ref|YP_004337812.1| - 1e-68 231.3 0.0 1.4e-68 230.8 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF3140 PF11338.8 gi|327310916|ref|YP_004337813.1| - 0.033 14.6 0.0 0.054 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) Hormone_3 PF00159.18 gi|327310916|ref|YP_004337813.1| - 0.059 13.5 0.1 0.28 11.3 0.0 2.1 2 0 0 2 2 2 0 Pancreatic hormone peptide COG2 PF06148.11 gi|327310916|ref|YP_004337813.1| - 0.18 11.9 0.0 22 5.1 0.0 2.2 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ATPase_2 PF01637.18 gi|327310917|ref|YP_004337814.1| - 9.6e-16 58.4 0.0 1.6e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|327310917|ref|YP_004337814.1| - 2.6e-08 34.0 0.0 0.0062 16.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|327310917|ref|YP_004337814.1| - 2.6e-06 27.8 0.0 9.4e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327310917|ref|YP_004337814.1| - 3.5e-06 27.5 2.2 5e-06 27.0 0.7 1.8 2 0 0 2 2 2 1 AAA ATPase domain ANAPC2 PF08672.11 gi|327310917|ref|YP_004337814.1| - 0.093 13.2 0.1 0.36 11.4 0.0 2.0 2 0 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 Flavin_Reduct PF01613.18 gi|327310919|ref|YP_004337816.1| - 5.3e-41 140.3 0.0 5.9e-41 140.1 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF447 PF04289.12 gi|327310919|ref|YP_004337816.1| - 0.022 14.5 0.0 0.027 14.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF447) Zip PF02535.22 gi|327310920|ref|YP_004337817.1| - 0.00015 21.1 12.2 0.00018 20.8 3.7 2.4 2 0 0 2 2 2 2 ZIP Zinc transporter ABC2_membrane_3 PF12698.7 gi|327310920|ref|YP_004337817.1| - 0.59 9.2 8.1 0.13 11.3 4.1 2.1 1 1 1 2 2 2 0 ABC-2 family transporter protein AhpC-TSA PF00578.21 gi|327310921|ref|YP_004337818.1| - 6.7e-36 122.9 0.0 7.8e-36 122.7 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|327310921|ref|YP_004337818.1| - 6.3e-21 74.6 0.0 7.2e-21 74.4 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|327310921|ref|YP_004337818.1| - 0.084 13.0 0.0 0.26 11.4 0.0 1.8 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme PrmA PF06325.13 gi|327310921|ref|YP_004337818.1| - 0.19 11.1 0.1 0.25 10.7 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Radical_SAM PF04055.21 gi|327310922|ref|YP_004337819.1| - 9.5e-15 55.4 0.0 3.3e-14 53.6 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|327310922|ref|YP_004337819.1| - 0.00058 20.3 0.0 0.001 19.4 0.0 1.4 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family AP_endonuc_2 PF01261.24 gi|327310922|ref|YP_004337819.1| - 0.0016 17.9 0.0 0.13 11.7 0.0 2.9 2 1 1 3 3 3 2 Xylose isomerase-like TIM barrel E1_dh PF00676.20 gi|327310923|ref|YP_004337820.1| - 2e-72 243.7 0.0 2.4e-72 243.4 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|327310923|ref|YP_004337820.1| - 0.0016 17.7 0.0 0.0026 17.0 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|327310923|ref|YP_004337820.1| - 0.014 15.2 2.0 0.1 12.4 2.0 2.1 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transket_pyr PF02779.24 gi|327310924|ref|YP_004337821.1| - 3.7e-51 173.3 0.0 6.5e-51 172.5 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|327310924|ref|YP_004337821.1| - 3.9e-34 117.2 4.5 6.7e-34 116.4 2.8 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.23 gi|327310925|ref|YP_004337822.1| - 1.1e-83 280.3 0.1 1.4e-83 280.0 0.1 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|327310925|ref|YP_004337822.1| - 3e-22 78.2 2.2 3e-22 78.2 2.2 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|327310925|ref|YP_004337822.1| - 2.8e-16 59.6 0.5 2.8e-16 59.6 0.5 2.7 3 0 0 3 3 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|327310925|ref|YP_004337822.1| - 4.2e-15 55.3 1.4 3e-07 30.1 0.4 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|327310925|ref|YP_004337822.1| - 3.9e-07 30.7 0.9 0.0096 16.6 0.2 2.7 1 1 1 2 2 2 2 HlyD family secretion protein PTS_EIIA_1 PF00358.20 gi|327310925|ref|YP_004337822.1| - 8.1e-05 22.4 0.3 0.092 12.5 0.0 2.6 1 1 1 2 2 2 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HlyD_D23 PF16576.5 gi|327310925|ref|YP_004337822.1| - 0.00012 21.3 3.1 0.052 12.8 0.2 2.5 2 1 1 3 3 3 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion DUF2118 PF09891.9 gi|327310925|ref|YP_004337822.1| - 0.00038 20.4 0.3 0.006 16.6 0.1 2.4 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2118) NQRA PF05896.11 gi|327310925|ref|YP_004337822.1| - 0.0012 18.3 0.3 0.0022 17.5 0.3 1.3 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) QRPTase_N PF02749.16 gi|327310925|ref|YP_004337822.1| - 0.009 16.0 1.3 2.2 8.4 0.0 3.0 2 1 1 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain PYNP_C PF07831.13 gi|327310925|ref|YP_004337822.1| - 0.017 14.8 0.9 0.93 9.2 0.1 2.6 1 1 1 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain RnfC_N PF13375.6 gi|327310925|ref|YP_004337822.1| - 0.023 14.6 0.4 0.064 13.2 0.4 1.7 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain YqfD PF06898.11 gi|327310925|ref|YP_004337822.1| - 0.038 12.8 1.6 0.15 10.9 0.1 2.1 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD GCV_H PF01597.19 gi|327310925|ref|YP_004337822.1| - 0.079 12.9 0.3 0.23 11.4 0.3 1.8 1 1 0 1 1 1 0 Glycine cleavage H-protein FlgD_ig PF13860.6 gi|327310925|ref|YP_004337822.1| - 0.12 12.2 0.4 4.2 7.3 0.1 2.6 2 1 0 2 2 2 0 FlgD Ig-like domain Pyr_redox_2 PF07992.14 gi|327310926|ref|YP_004337823.1| - 1.7e-68 231.1 0.4 2.2e-68 230.7 0.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|327310926|ref|YP_004337823.1| - 4.5e-32 110.6 0.0 9e-32 109.6 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|327310926|ref|YP_004337823.1| - 2.1e-21 76.3 7.6 3.9e-18 65.8 0.3 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|327310926|ref|YP_004337823.1| - 2.8e-17 63.0 0.0 5.2e-17 62.0 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|327310926|ref|YP_004337823.1| - 1.4e-11 44.2 9.3 1.1e-06 28.0 2.8 2.8 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|327310926|ref|YP_004337823.1| - 2.4e-11 43.6 10.1 1.3e-08 34.6 0.5 3.2 3 0 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|327310926|ref|YP_004337823.1| - 8.5e-10 37.9 9.6 0.0013 17.5 1.2 3.3 3 0 0 3 3 3 3 HI0933-like protein FAD_binding_2 PF00890.24 gi|327310926|ref|YP_004337823.1| - 1.3e-08 34.4 10.5 3.2e-06 26.5 0.7 3.3 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|327310926|ref|YP_004337823.1| - 1.6e-08 34.7 4.5 4.9e-05 23.5 0.5 3.1 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|327310926|ref|YP_004337823.1| - 3.5e-08 33.0 6.8 5.9e-05 22.5 1.1 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|327310926|ref|YP_004337823.1| - 6.2e-07 29.0 12.3 0.0094 15.2 1.2 3.3 3 0 0 3 3 3 3 FAD binding domain Trp_halogenase PF04820.14 gi|327310926|ref|YP_004337823.1| - 5.4e-06 25.5 9.9 0.00041 19.3 0.1 3.0 3 0 0 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|327310926|ref|YP_004337823.1| - 0.00077 18.6 10.8 0.031 13.3 0.7 3.2 3 0 0 3 3 3 2 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|327310926|ref|YP_004337823.1| - 0.0048 16.8 2.6 0.06 13.2 0.6 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|327310926|ref|YP_004337823.1| - 0.007 16.0 2.9 0.007 16.0 2.9 4.2 3 2 2 5 5 5 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|327310926|ref|YP_004337823.1| - 0.0096 15.2 2.4 1.5 8.0 0.3 2.4 2 0 0 2 2 2 2 Thi4 family NAD_binding_7 PF13241.6 gi|327310926|ref|YP_004337823.1| - 0.015 15.8 2.1 1.1 9.8 0.2 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|327310926|ref|YP_004337823.1| - 0.036 14.1 8.7 4.9 7.1 0.1 4.0 4 0 0 4 4 4 0 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|327310926|ref|YP_004337823.1| - 0.17 11.2 0.2 15 4.9 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|327310926|ref|YP_004337823.1| - 1.8 8.1 3.4 13 5.3 0.2 2.4 2 1 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BPL_LplA_LipB PF03099.19 gi|327310927|ref|YP_004337824.1| - 8.9e-08 32.1 0.1 1.4e-07 31.5 0.1 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Aldolase_II PF00596.21 gi|327310927|ref|YP_004337824.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 Class II Aldolase and Adducin N-terminal domain TusA PF01206.17 gi|327310928|ref|YP_004337825.1| - 5.9e-05 22.8 0.0 7.8e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|327310928|ref|YP_004337825.1| - 0.027 14.3 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Rhodanese PF00581.20 gi|327310929|ref|YP_004337826.1| - 2.4e-41 140.6 0.1 9.6e-20 71.1 0.1 2.1 2 0 0 2 2 2 2 Rhodanese-like domain PaREP1 PF05942.11 gi|327310930|ref|YP_004337827.1| - 8.7e-24 83.7 11.0 1.2e-23 83.2 11.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|327310930|ref|YP_004337827.1| - 0.007 16.5 5.2 0.014 15.5 5.2 1.5 1 1 0 1 1 1 1 HEPN domain HisKA_3 PF07730.13 gi|327310930|ref|YP_004337827.1| - 0.036 14.6 0.6 13 6.4 0.1 2.6 2 0 0 2 2 2 0 Histidine kinase DAO PF01266.24 gi|327310931|ref|YP_004337828.1| - 7.7e-39 134.2 3.0 9.8e-39 133.9 3.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|327310931|ref|YP_004337828.1| - 3.2e-07 29.9 0.5 3.6e-05 23.1 0.5 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327310931|ref|YP_004337828.1| - 7.1e-07 29.4 0.8 2e-06 27.9 0.4 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|327310931|ref|YP_004337828.1| - 5.4e-05 23.7 0.4 0.00013 22.5 0.4 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|327310931|ref|YP_004337828.1| - 0.00013 21.2 1.1 0.00071 18.8 0.3 2.0 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 gi|327310931|ref|YP_004337828.1| - 0.00031 20.2 0.4 0.37 10.0 0.1 2.2 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|327310931|ref|YP_004337828.1| - 0.0018 17.6 0.5 0.0031 16.9 0.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|327310931|ref|YP_004337828.1| - 0.0019 17.0 0.5 0.0049 15.6 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|327310931|ref|YP_004337828.1| - 0.0019 17.6 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|327310931|ref|YP_004337828.1| - 0.0025 16.9 0.3 0.21 10.6 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.22 gi|327310931|ref|YP_004337828.1| - 0.005 16.0 1.7 0.025 13.7 1.1 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A ApbA PF02558.16 gi|327310931|ref|YP_004337828.1| - 0.0075 15.9 0.3 0.013 15.2 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|327310931|ref|YP_004337828.1| - 0.0078 15.5 0.2 0.011 15.0 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|327310931|ref|YP_004337828.1| - 0.013 14.8 0.4 0.038 13.2 0.1 1.8 2 0 0 2 2 2 0 Thi4 family NAD_binding_7 PF13241.6 gi|327310931|ref|YP_004337828.1| - 0.052 14.0 0.1 0.11 12.9 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|327310931|ref|YP_004337828.1| - 0.071 12.0 0.3 0.12 11.2 0.3 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Transketolase_C PF02780.20 gi|327310931|ref|YP_004337828.1| - 0.094 12.6 0.1 6.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Transketolase, C-terminal domain PDGLE PF13190.6 gi|327310931|ref|YP_004337828.1| - 0.1 12.5 0.3 0.28 11.1 0.0 1.8 2 0 0 2 2 2 0 PDGLE domain Pyr_redox_3 PF13738.6 gi|327310931|ref|YP_004337828.1| - 0.13 11.5 0.9 0.26 10.5 0.3 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|327310931|ref|YP_004337828.1| - 1.2 9.1 3.2 2.5 8.1 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding HTH_36 PF13730.6 gi|327310932|ref|YP_004337829.1| - 1.2e-05 25.1 0.0 2.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|327310932|ref|YP_004337829.1| - 6.8e-05 23.1 0.0 0.00011 22.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|327310932|ref|YP_004337829.1| - 7.5e-05 22.5 0.8 0.00013 21.7 0.8 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|327310932|ref|YP_004337829.1| - 0.00015 21.8 0.4 0.00038 20.5 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|327310932|ref|YP_004337829.1| - 0.00068 19.1 0.1 0.0011 18.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|327310932|ref|YP_004337829.1| - 0.0011 19.4 0.2 0.002 18.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|327310932|ref|YP_004337829.1| - 0.0028 17.5 0.1 0.0052 16.6 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PaaX PF07848.12 gi|327310932|ref|YP_004337829.1| - 0.0048 17.1 0.8 0.015 15.5 0.7 1.9 1 1 0 1 1 1 1 PaaX-like protein HTH_11 PF08279.12 gi|327310932|ref|YP_004337829.1| - 0.0059 16.5 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|327310932|ref|YP_004337829.1| - 0.013 15.2 1.6 0.019 14.6 0.7 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|327310932|ref|YP_004337829.1| - 0.027 14.5 1.6 0.028 14.5 0.3 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain SgrR_N PF12793.7 gi|327310932|ref|YP_004337829.1| - 0.03 14.5 0.0 0.045 14.0 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HxlR PF01638.17 gi|327310932|ref|YP_004337829.1| - 0.049 13.5 0.1 0.082 12.8 0.1 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_Mga PF08280.11 gi|327310932|ref|YP_004337829.1| - 0.076 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain AbiEi_4 PF13338.6 gi|327310932|ref|YP_004337829.1| - 0.11 12.7 0.6 0.11 12.7 0.6 2.7 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin RPA_C PF08784.11 gi|327310932|ref|YP_004337829.1| - 0.13 13.0 0.0 0.19 12.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal Pirin PF02678.16 gi|327310933|ref|YP_004337830.1| - 5.7e-36 122.8 0.0 8.2e-36 122.3 0.0 1.2 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|327310933|ref|YP_004337830.1| - 9.9e-26 90.1 0.0 6.5e-25 87.5 0.0 2.0 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 gi|327310933|ref|YP_004337830.1| - 0.00045 19.9 0.2 0.00093 18.9 0.2 1.5 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|327310933|ref|YP_004337830.1| - 0.045 13.4 0.0 0.096 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) YHS PF04945.13 gi|327310935|ref|YP_004337832.1| - 2.4e-22 78.7 1.0 2.7e-22 78.6 1.0 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|327310935|ref|YP_004337832.1| - 0.00023 21.4 1.6 0.00035 20.8 1.6 1.3 1 1 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|327310935|ref|YP_004337832.1| - 0.00082 19.3 0.6 0.0011 18.9 0.6 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|327310935|ref|YP_004337832.1| - 0.046 13.2 0.0 0.051 13.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF2116 PF09889.9 gi|327310935|ref|YP_004337832.1| - 0.06 13.3 0.1 0.06 13.3 0.1 2.2 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) MarR_2 PF12802.7 gi|327310936|ref|YP_004337833.1| - 2.7e-07 30.4 0.1 5.4e-07 29.4 0.1 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|327310936|ref|YP_004337833.1| - 3.5e-07 30.0 0.3 1.2e-06 28.2 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|327310936|ref|YP_004337833.1| - 0.00034 20.4 0.0 0.00075 19.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|327310936|ref|YP_004337833.1| - 0.0022 17.5 0.0 0.0042 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|327310936|ref|YP_004337833.1| - 0.0026 17.7 0.1 0.0054 16.6 0.0 1.5 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|327310936|ref|YP_004337833.1| - 0.009 15.9 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|327310936|ref|YP_004337833.1| - 0.014 15.7 0.0 0.027 14.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_AsnC-type PF13404.6 gi|327310936|ref|YP_004337833.1| - 0.015 15.1 1.0 0.022 14.6 0.1 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|327310936|ref|YP_004337833.1| - 0.031 14.1 0.0 0.059 13.2 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|327310936|ref|YP_004337833.1| - 0.036 13.8 0.1 0.059 13.2 0.1 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Fe_dep_repress PF01325.19 gi|327310936|ref|YP_004337833.1| - 0.044 14.0 0.0 0.074 13.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.6 gi|327310936|ref|YP_004337833.1| - 0.048 13.6 0.1 0.079 13.0 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|327310936|ref|YP_004337833.1| - 0.053 13.2 0.4 0.097 12.3 0.4 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family zf-Mss51 PF13824.6 gi|327310936|ref|YP_004337833.1| - 0.067 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Phage_terminase PF10668.9 gi|327310936|ref|YP_004337833.1| - 0.14 12.2 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Phage terminase small subunit Thioredox_DsbH PF03190.15 gi|327310938|ref|YP_004337835.1| - 6e-57 192.1 0.0 8.8e-57 191.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|327310938|ref|YP_004337835.1| - 3.1e-12 46.5 0.2 5.6e-12 45.7 0.2 1.4 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|327310938|ref|YP_004337835.1| - 0.0015 18.5 0.1 0.0029 17.6 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|327310938|ref|YP_004337835.1| - 0.0026 18.2 0.0 0.0046 17.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain AHJR-like PF18743.1 gi|327310938|ref|YP_004337835.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 REase_AHJR-like Asp_protease_2 PF13650.6 gi|327310939|ref|YP_004337836.1| - 4.1e-09 37.0 0.4 7.1e-09 36.2 0.4 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|327310939|ref|YP_004337836.1| - 1.1e-08 35.5 0.2 1.7e-08 34.9 0.2 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|327310939|ref|YP_004337836.1| - 0.0035 17.6 0.1 0.007 16.7 0.1 1.7 1 1 0 1 1 1 1 Retroviral aspartyl protease HTH_31 PF13560.6 gi|327310939|ref|YP_004337836.1| - 0.016 15.6 0.0 0.037 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF257 PF03192.13 gi|327310939|ref|YP_004337836.1| - 0.028 14.2 0.1 0.036 13.9 0.1 1.1 1 0 0 1 1 1 0 Pyrococcus protein of unknown function, DUF257 HTH_3 PF01381.22 gi|327310939|ref|YP_004337836.1| - 0.032 14.3 0.0 0.098 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix Asp PF00026.23 gi|327310939|ref|YP_004337836.1| - 0.085 12.3 0.0 0.085 12.3 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic aspartyl protease Asp_protease PF09668.10 gi|327310939|ref|YP_004337836.1| - 0.14 11.9 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Aspartyl protease GPI2 PF06432.11 gi|327310940|ref|YP_004337837.1| - 0.0046 16.4 1.5 1.5 8.2 0.0 2.0 1 1 1 2 2 2 2 Phosphatidylinositol N-acetylglucosaminyltransferase BRI3BP PF14965.6 gi|327310940|ref|YP_004337837.1| - 0.18 11.3 5.7 0.13 11.8 0.4 2.1 2 0 0 2 2 2 0 Negative regulator of p53/TP53 DUF2686 PF10887.8 gi|327310941|ref|YP_004337838.1| - 0.066 12.1 0.1 0.11 11.4 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2686) SecE PF00584.20 gi|327310941|ref|YP_004337838.1| - 0.12 12.3 1.0 0.12 12.3 1.0 3.1 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex SieB PF14163.6 gi|327310941|ref|YP_004337838.1| - 0.13 11.8 4.4 0.084 12.4 2.0 2.0 1 1 1 2 2 2 0 Super-infection exclusion protein B NPCC PF08058.11 gi|327310941|ref|YP_004337838.1| - 0.35 10.9 1.3 0.8 9.8 1.3 1.7 1 1 0 1 1 1 0 Nuclear pore complex component Abhydrolase_9_N PF15420.6 gi|327310941|ref|YP_004337838.1| - 3.4 7.6 10.2 2.5 8.1 7.4 1.8 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus TctB PF07331.11 gi|327310941|ref|YP_004337838.1| - 6 7.1 10.8 16 5.7 10.8 1.7 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Pro_CA PF00484.19 gi|327310942|ref|YP_004337839.1| - 2e-25 89.9 0.1 3.9e-25 89.0 0.1 1.5 1 1 0 1 1 1 1 Carbonic anhydrase Phage_holin_4_2 PF04020.13 gi|327310943|ref|YP_004337840.1| - 0.001 19.7 2.6 0.001 19.7 2.6 2.0 1 1 1 2 2 2 1 Mycobacterial 4 TMS phage holin, superfamily IV TctB PF07331.11 gi|327310943|ref|YP_004337840.1| - 0.0037 17.5 4.5 0.0037 17.5 4.5 2.1 2 0 0 2 2 2 1 Tripartite tricarboxylate transporter TctB family DUF4134 PF13572.6 gi|327310943|ref|YP_004337840.1| - 0.047 14.0 1.1 0.047 14.0 1.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4134) Yip1 PF04893.17 gi|327310943|ref|YP_004337840.1| - 0.85 9.3 23.1 1.1 8.9 23.1 1.2 1 0 0 1 1 1 0 Yip1 domain Gly-zipper_Omp PF13488.6 gi|327310943|ref|YP_004337840.1| - 9.5 6.3 12.2 0.072 13.1 2.2 2.5 3 1 0 3 3 3 0 Glycine zipper DHHA1 PF02272.19 gi|327310944|ref|YP_004337841.1| - 3e-12 47.1 0.0 5.5e-12 46.3 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|327310944|ref|YP_004337841.1| - 1.1e-05 25.6 0.1 1.7e-05 25.0 0.1 1.3 1 0 0 1 1 1 1 DHH family Polbeta PF18765.1 gi|327310945|ref|YP_004337842.1| - 8.8e-21 73.8 0.0 1.6e-20 73.0 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|327310945|ref|YP_004337842.1| - 1e-08 35.3 0.5 2.5e-08 34.1 0.5 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|327310945|ref|YP_004337842.1| - 4.2e-05 23.4 0.0 6.7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF86 RlaP PF10127.9 gi|327310945|ref|YP_004337842.1| - 0.078 12.6 0.2 0.14 11.7 0.1 1.5 1 1 0 1 1 1 0 RNA repair pathway DNA polymerase beta family DUF2204 PF09970.9 gi|327310946|ref|YP_004337843.1| - 0.0074 16.0 0.0 0.011 15.4 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_8 PF12281.8 gi|327310946|ref|YP_004337843.1| - 0.13 12.3 0.0 7.9 6.4 0.0 2.3 2 1 0 2 2 2 0 Nucleotidyltransferase GatD_N PF18195.1 gi|327310946|ref|YP_004337843.1| - 0.16 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 GatD N-terminal domain PaREP1 PF05942.11 gi|327310948|ref|YP_004337845.1| - 1.4e-24 86.3 0.8 1.7e-24 86.0 0.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|327310948|ref|YP_004337845.1| - 0.021 15.0 1.0 0.027 14.6 1.0 1.2 1 0 0 1 1 1 0 HEPN domain Defensin_big PF14862.6 gi|327310949|ref|YP_004337846.1| - 0.0035 17.6 0.0 0.0042 17.4 0.0 1.1 1 0 0 1 1 1 1 Big defensin PaREP1 PF05942.11 gi|327310950|ref|YP_004337847.1| - 1.5e-27 95.8 4.6 1.5e-27 95.8 4.6 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF4398 PF14346.6 gi|327310950|ref|YP_004337847.1| - 2.8 8.6 11.6 4.8 7.9 6.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4398) Pterin_4a PF01329.19 gi|327310951|ref|YP_004337848.1| - 4.9e-16 58.7 0.0 5.6e-16 58.5 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase TPR_12 PF13424.6 gi|327310951|ref|YP_004337848.1| - 0.014 15.6 1.1 0.018 15.3 0.2 1.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|327310951|ref|YP_004337848.1| - 0.037 14.7 1.3 0.042 14.5 0.2 1.6 2 0 0 2 2 2 0 Tetratricopeptide repeat L27_1 PF09058.10 gi|327310951|ref|YP_004337848.1| - 0.037 14.0 0.6 1.2 9.2 0.6 2.1 1 1 0 1 1 1 0 L27_1 DUF2374 PF09574.10 gi|327310953|ref|YP_004337850.1| - 0.077 12.8 0.9 0.12 12.2 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (Duf2374) Prenyltrans PF00432.21 gi|327310954|ref|YP_004337851.1| - 0.075 12.8 0.2 0.14 11.9 0.2 1.5 1 0 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat Oxidored_molyb PF00174.19 gi|327310955|ref|YP_004337852.1| - 1.9e-45 154.5 0.3 3.7e-45 153.6 0.3 1.4 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain TAT_signal PF10518.9 gi|327310955|ref|YP_004337852.1| - 0.00019 21.1 2.6 0.00036 20.2 2.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence HTH_5 PF01022.20 gi|327310956|ref|YP_004337853.1| - 1.9e-11 43.6 0.1 2.7e-11 43.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|327310956|ref|YP_004337853.1| - 3.6e-10 39.8 0.0 4.9e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|327310956|ref|YP_004337853.1| - 1.2e-05 25.0 0.0 1.9e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|327310956|ref|YP_004337853.1| - 9.3e-05 22.2 0.1 0.00015 21.5 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|327310956|ref|YP_004337853.1| - 0.00013 21.8 0.0 0.00024 20.9 0.0 1.4 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|327310956|ref|YP_004337853.1| - 0.00031 21.1 0.0 0.032 14.6 0.0 2.0 1 1 1 2 2 2 1 Penicillinase repressor HTH_Crp_2 PF13545.6 gi|327310956|ref|YP_004337853.1| - 0.00062 19.7 0.0 0.00093 19.1 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|327310956|ref|YP_004337853.1| - 0.00074 19.0 0.1 0.0015 18.0 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|327310956|ref|YP_004337853.1| - 0.0022 17.5 0.0 0.0038 16.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_45 PF14947.6 gi|327310956|ref|YP_004337853.1| - 0.0024 17.8 0.0 0.0036 17.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix LexA_DNA_bind PF01726.16 gi|327310956|ref|YP_004337853.1| - 0.003 17.3 0.0 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Dimerisation2 PF16864.5 gi|327310956|ref|YP_004337853.1| - 0.0031 17.5 0.0 0.004 17.1 0.0 1.2 1 0 0 1 1 1 1 Dimerisation domain DUF4423 PF14394.6 gi|327310956|ref|YP_004337853.1| - 0.0032 17.2 0.0 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_12 PF08461.10 gi|327310956|ref|YP_004337853.1| - 0.0043 17.0 0.0 0.0068 16.3 0.0 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain DUF2250 PF10007.9 gi|327310956|ref|YP_004337853.1| - 0.0061 16.6 0.0 0.0093 16.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_29 PF13551.6 gi|327310956|ref|YP_004337853.1| - 0.0063 16.5 0.0 0.0098 15.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix FaeA PF04703.12 gi|327310956|ref|YP_004337853.1| - 0.0065 16.8 0.0 0.011 16.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein Rrf2 PF02082.20 gi|327310956|ref|YP_004337853.1| - 0.0096 16.2 0.0 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.10 gi|327310956|ref|YP_004337853.1| - 0.013 15.6 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_9 PF08221.11 gi|327310956|ref|YP_004337853.1| - 0.028 14.5 0.0 0.071 13.2 0.0 1.6 1 1 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.22 gi|327310956|ref|YP_004337853.1| - 0.029 14.3 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|327310956|ref|YP_004337853.1| - 0.073 13.2 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|327310956|ref|YP_004337853.1| - 0.085 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.12 gi|327310956|ref|YP_004337853.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.12 gi|327310956|ref|YP_004337853.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|327310956|ref|YP_004337853.1| - 0.12 12.4 0.0 0.26 11.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|327310956|ref|YP_004337853.1| - 0.12 12.8 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DprA_WH PF17782.1 gi|327310956|ref|YP_004337853.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 DprA winged helix domain TnsD PF15978.5 gi|327310956|ref|YP_004337853.1| - 0.16 10.9 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D DUF2089 PF09862.9 gi|327310956|ref|YP_004337853.1| - 0.19 11.8 0.0 0.26 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) DUF5472 PF17566.2 gi|327310957|ref|YP_004337854.1| - 0.02 14.8 0.5 0.02 14.8 0.5 1.6 1 1 1 2 2 2 0 Family of unknown function (DUF5472) APC_r PF05923.12 gi|327310958|ref|YP_004337855.1| - 0.006 16.3 0.0 0.063 13.0 0.0 2.3 2 0 0 2 2 2 1 APC repeat DUF4350 PF14258.6 gi|327310958|ref|YP_004337855.1| - 0.073 13.5 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) DrsE_2 PF13686.6 gi|327310959|ref|YP_004337856.1| - 8.7e-09 35.5 0.0 1.2e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|327310959|ref|YP_004337856.1| - 0.0016 18.8 0.0 0.0038 17.6 0.0 1.6 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF4265 PF14085.6 gi|327310959|ref|YP_004337856.1| - 0.18 11.8 0.0 0.46 10.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4265) TusA PF01206.17 gi|327310960|ref|YP_004337857.1| - 2.7e-25 88.0 0.0 3e-25 87.8 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1930 PF09122.10 gi|327310960|ref|YP_004337857.1| - 0.094 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) CbiA PF01656.23 gi|327310961|ref|YP_004337858.1| - 9.8e-06 25.7 0.0 1.1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|327310961|ref|YP_004337858.1| - 0.011 15.6 0.0 0.11 12.3 0.0 1.9 1 1 1 2 2 2 0 AAA domain MobB PF03205.14 gi|327310961|ref|YP_004337858.1| - 0.061 13.2 0.0 0.26 11.2 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FeS_assembly_P PF01883.19 gi|327310961|ref|YP_004337858.1| - 0.073 13.2 0.0 0.17 12.1 0.0 1.6 2 0 0 2 2 2 0 Iron-sulfur cluster assembly protein FtsX PF02687.21 gi|327310962|ref|YP_004337859.1| - 0.0074 16.7 3.3 0.0096 16.4 3.3 1.0 1 0 0 1 1 1 1 FtsX-like permease family DUF3522 PF12036.8 gi|327310963|ref|YP_004337860.1| - 0.026 14.8 1.7 0.031 14.6 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) DUF4481 PF14800.6 gi|327310963|ref|YP_004337860.1| - 0.1 12.1 1.5 0.11 12.0 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4481) DUF1774 PF08611.10 gi|327310963|ref|YP_004337860.1| - 2.9 8.3 6.3 16 5.9 1.4 2.7 1 1 2 3 3 3 0 Fungal protein of unknown function (DUF1774) Cytochrom_B_N_2 PF13631.6 gi|327310964|ref|YP_004337861.1| - 7.4e-22 78.1 7.4 7.4e-22 78.1 7.4 1.9 4 0 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|327310964|ref|YP_004337861.1| - 2.5e-18 66.6 17.6 2.5e-18 66.6 17.6 2.9 2 1 0 2 2 2 1 Cytochrome b/b6/petB DUF4405 PF14358.6 gi|327310964|ref|YP_004337861.1| - 0.0012 19.4 9.0 0.0012 19.4 9.0 3.3 3 2 1 4 4 4 1 Domain of unknown function (DUF4405) Claudin_3 PF06653.11 gi|327310964|ref|YP_004337861.1| - 0.1 12.5 0.2 0.1 12.5 0.2 2.6 3 1 0 3 3 3 0 Tight junction protein, Claudin-like PepSY_TM_like_2 PF16357.5 gi|327310964|ref|YP_004337861.1| - 0.13 12.3 2.1 0.18 11.8 0.1 2.3 2 0 0 2 2 2 0 Putative PepSY_TM-like Rieske PF00355.26 gi|327310965|ref|YP_004337862.1| - 6e-08 32.5 0.5 1.5e-07 31.2 0.5 1.8 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_C PF00034.21 gi|327310966|ref|YP_004337863.1| - 0.024 15.8 0.0 0.048 14.8 0.0 1.7 1 1 0 1 1 1 0 Cytochrome c Glycos_transf_1 PF00534.20 gi|327310966|ref|YP_004337863.1| - 0.11 12.1 0.0 0.4 10.2 0.0 1.8 1 1 1 2 2 2 0 Glycosyl transferases group 1 GCN5L1 PF06320.13 gi|327310966|ref|YP_004337863.1| - 0.13 12.4 0.1 0.21 11.7 0.1 1.2 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) AA_permease_C PF13906.6 gi|327310967|ref|YP_004337864.1| - 2.7 8.1 9.9 1.3 9.2 1.8 2.3 2 0 0 2 2 2 0 C-terminus of AA_permease COX2 PF00116.20 gi|327310968|ref|YP_004337865.1| - 3.6e-16 59.1 0.4 1.6e-13 50.5 0.0 2.1 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|327310968|ref|YP_004337865.1| - 1.3e-07 31.6 0.0 1.4e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Cupredoxin-like domain Copper-bind PF00127.20 gi|327310968|ref|YP_004337865.1| - 0.17 12.4 0.3 1.9 9.0 0.2 2.1 1 1 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family DUF4516 PF14990.6 gi|327310968|ref|YP_004337865.1| - 0.23 11.2 1.2 1.1 9.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4516) Vhr1 PF04001.13 gi|327310968|ref|YP_004337865.1| - 0.26 11.6 0.0 0.38 11.1 0.0 1.2 1 0 0 1 1 1 0 Transcription factor Vhr1 COX1 PF00115.20 gi|327310969|ref|YP_004337866.1| - 2.5e-119 398.9 56.1 2.5e-119 398.9 56.1 3.0 2 1 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|327310969|ref|YP_004337866.1| - 2.8e-14 53.6 16.4 8.2e-14 52.1 16.4 1.8 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III SCO1-SenC PF02630.14 gi|327310971|ref|YP_004337868.1| - 3.4e-25 88.5 0.0 4.9e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC UbiA PF01040.18 gi|327310972|ref|YP_004337869.1| - 7.3e-40 136.9 25.8 9.1e-40 136.5 25.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family SCO1-SenC PF02630.14 gi|327310974|ref|YP_004337871.1| - 2.4e-20 72.8 0.0 3.4e-20 72.3 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 gi|327310974|ref|YP_004337871.1| - 0.0021 18.0 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|327310974|ref|YP_004337871.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Redoxin PF08534.10 gi|327310974|ref|YP_004337871.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Redoxin PCuAC PF04314.13 gi|327310976|ref|YP_004337873.1| - 0.0016 18.2 0.0 0.0022 17.7 0.0 1.2 1 0 0 1 1 1 1 Copper chaperone PCu(A)C HTH_5 PF01022.20 gi|327310980|ref|YP_004337877.1| - 4.2e-08 32.9 0.1 7.4e-08 32.1 0.0 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|327310980|ref|YP_004337877.1| - 3e-06 27.2 0.2 4.5e-06 26.6 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|327310980|ref|YP_004337877.1| - 4.9e-05 23.2 0.0 8.7e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|327310980|ref|YP_004337877.1| - 0.00018 21.4 0.0 0.00035 20.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|327310980|ref|YP_004337877.1| - 0.0011 18.9 0.1 0.0017 18.2 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|327310980|ref|YP_004337877.1| - 0.0011 18.8 0.2 0.0016 18.2 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|327310980|ref|YP_004337877.1| - 0.0015 18.4 0.1 0.0024 17.8 0.1 1.3 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|327310980|ref|YP_004337877.1| - 0.0024 17.8 0.0 0.0094 15.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|327310980|ref|YP_004337877.1| - 0.003 17.9 0.0 0.0057 17.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator Dimerisation2 PF16864.5 gi|327310980|ref|YP_004337877.1| - 0.0057 16.6 0.0 0.0076 16.2 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain GntR PF00392.21 gi|327310980|ref|YP_004337877.1| - 0.027 14.1 0.2 0.046 13.4 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|327310980|ref|YP_004337877.1| - 0.033 14.3 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 DprA winged helix domain Replic_Relax PF13814.6 gi|327310980|ref|YP_004337877.1| - 0.038 14.1 0.1 0.049 13.7 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF505 PF04458.12 gi|327310980|ref|YP_004337877.1| - 0.044 12.1 0.0 0.045 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4093 PF13331.6 gi|327310980|ref|YP_004337877.1| - 0.045 14.2 0.9 0.079 13.4 0.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4093) HxlR PF01638.17 gi|327310980|ref|YP_004337877.1| - 0.054 13.4 0.0 0.083 12.8 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_DeoR PF08220.12 gi|327310980|ref|YP_004337877.1| - 0.088 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|327310980|ref|YP_004337877.1| - 0.12 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Ribosomal_S25 PF03297.15 gi|327310980|ref|YP_004337877.1| - 0.12 12.6 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 S25 ribosomal protein HTH_24 PF13412.6 gi|327310980|ref|YP_004337877.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.13 gi|327310980|ref|YP_004337877.1| - 0.14 12.5 0.1 0.24 11.7 0.1 1.4 1 0 0 1 1 1 0 NUMOD1 domain Cytochrom_C_asm PF01578.20 gi|327310982|ref|YP_004337879.1| - 2.6e-08 33.9 4.6 2.6e-08 33.9 4.6 1.7 2 0 0 2 2 2 1 Cytochrome C assembly protein DUF5357 PF17310.2 gi|327310982|ref|YP_004337879.1| - 0.21 10.1 0.2 0.43 9.1 0.2 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5357) Cytochrom_C_asm PF01578.20 gi|327310983|ref|YP_004337880.1| - 3.9e-12 46.4 24.2 1.2e-10 41.6 9.3 3.2 3 1 0 3 3 3 2 Cytochrome C assembly protein ABC_tran PF00005.27 gi|327310984|ref|YP_004337881.1| - 1.8e-18 67.4 0.0 3.1e-18 66.6 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327310984|ref|YP_004337881.1| - 5.4e-08 33.0 0.2 0.0017 18.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|327310984|ref|YP_004337881.1| - 3e-05 23.7 0.0 5.1e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|327310984|ref|YP_004337881.1| - 0.0028 18.2 0.0 0.0035 17.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain DUF3584 PF12128.8 gi|327310984|ref|YP_004337881.1| - 0.022 12.3 0.0 0.029 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.6 gi|327310984|ref|YP_004337881.1| - 0.039 14.3 0.1 0.059 13.8 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|327310984|ref|YP_004337881.1| - 0.068 13.6 0.0 0.12 12.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|327310984|ref|YP_004337881.1| - 0.075 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Mg_chelatase PF01078.21 gi|327310984|ref|YP_004337881.1| - 0.13 11.6 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF815 PF05673.13 gi|327310984|ref|YP_004337881.1| - 0.13 11.4 0.1 0.2 10.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_25 PF13481.6 gi|327310984|ref|YP_004337881.1| - 0.14 11.7 0.1 0.21 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|327310984|ref|YP_004337881.1| - 0.14 11.8 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|327310984|ref|YP_004337881.1| - 0.29 9.8 0.0 0.34 9.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|327310985|ref|YP_004337882.1| - 0.0018 17.7 4.2 0.0023 17.4 4.2 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|327310985|ref|YP_004337882.1| - 0.019 14.9 0.8 0.072 13.1 0.9 2.0 1 1 1 2 2 2 0 ABC-2 family transporter protein CPBP PF02517.16 gi|327310985|ref|YP_004337882.1| - 0.71 10.3 5.2 2.4 8.6 5.2 1.9 1 1 0 1 1 1 0 CPBP intramembrane metalloprotease Nitro_FeMo-Co PF02579.17 gi|327310986|ref|YP_004337883.1| - 4.2e-05 23.8 0.0 0.33 11.3 0.0 2.3 1 1 1 2 2 2 2 Dinitrogenase iron-molybdenum cofactor Glyoxal_oxid_N PF07250.11 gi|327310986|ref|YP_004337883.1| - 0.17 11.1 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus COXG PF06240.13 gi|327310987|ref|YP_004337884.1| - 2.2e-05 24.2 0.0 2.6e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) TusA PF01206.17 gi|327310988|ref|YP_004337885.1| - 3.7e-16 58.7 0.0 4e-16 58.6 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2375 PF09558.10 gi|327310990|ref|YP_004337887.1| - 0.12 12.5 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2375) Nitroreductase PF00881.24 gi|327310991|ref|YP_004337888.1| - 4.9e-26 91.8 0.0 8.2e-26 91.1 0.0 1.4 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|327310991|ref|YP_004337888.1| - 5.5e-07 29.4 0.0 0.37 10.3 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase Arylesterase PF01731.20 gi|327310992|ref|YP_004337889.1| - 0.15 12.3 0.0 0.64 10.2 0.0 2.1 2 0 0 2 2 2 0 Arylesterase Sulf_transp PF04143.14 gi|327310993|ref|YP_004337890.1| - 2.9e-40 138.7 34.7 3.7e-27 95.7 8.4 2.6 3 0 0 3 3 3 2 Sulphur transport DrsE PF02635.15 gi|327310994|ref|YP_004337891.1| - 2.9e-07 30.9 0.0 3.4e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|327310994|ref|YP_004337891.1| - 0.028 14.3 0.0 0.048 13.6 0.0 1.4 1 1 0 1 1 1 0 DsrE/DsrF/DrsH-like family TusA PF01206.17 gi|327310995|ref|YP_004337892.1| - 8.4e-19 67.2 0.0 1e-18 66.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|327310995|ref|YP_004337892.1| - 0.017 15.0 0.0 0.043 13.7 0.0 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Cytochrom_D1 PF02239.16 gi|327310997|ref|YP_004337894.1| - 0.00024 19.7 0.0 0.014 13.9 0.0 2.4 2 0 0 2 2 2 1 Cytochrome D1 heme domain TMF_DNA_bd PF12329.8 gi|327310997|ref|YP_004337894.1| - 0.0061 16.5 0.7 0.0093 15.9 0.7 1.2 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding DivIC PF04977.15 gi|327310997|ref|YP_004337894.1| - 0.0095 15.7 2.7 0.017 14.9 2.7 1.4 1 0 0 1 1 1 1 Septum formation initiator DUF3573 PF12097.8 gi|327310997|ref|YP_004337894.1| - 0.0096 14.8 0.1 0.013 14.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) DUF3496 PF12001.8 gi|327310997|ref|YP_004337894.1| - 0.015 15.7 0.1 0.028 14.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3496) DUF4618 PF15397.6 gi|327310997|ref|YP_004337894.1| - 0.015 14.8 0.2 0.021 14.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) Tropomyosin_1 PF12718.7 gi|327310997|ref|YP_004337894.1| - 0.042 14.0 0.1 0.063 13.4 0.1 1.1 1 0 0 1 1 1 0 Tropomyosin like Atg14 PF10186.9 gi|327310997|ref|YP_004337894.1| - 0.046 12.8 0.6 0.067 12.3 0.6 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Lactonase PF10282.9 gi|327310997|ref|YP_004337894.1| - 0.063 12.5 0.0 1.8 7.7 0.0 2.7 3 0 0 3 3 3 0 Lactonase, 7-bladed beta-propeller SlyX PF04102.12 gi|327310997|ref|YP_004337894.1| - 0.068 13.8 0.5 0.12 13.0 0.5 1.4 1 0 0 1 1 1 0 SlyX AAA_13 PF13166.6 gi|327310997|ref|YP_004337894.1| - 0.11 11.2 0.0 0.14 10.7 0.0 1.0 1 0 0 1 1 1 0 AAA domain PspA_IM30 PF04012.12 gi|327310997|ref|YP_004337894.1| - 0.13 11.9 3.4 0.18 11.4 3.4 1.1 1 0 0 1 1 1 0 PspA/IM30 family TolA_bind_tri PF16331.5 gi|327310997|ref|YP_004337894.1| - 0.13 12.3 2.0 0.22 11.6 2.0 1.2 1 0 0 1 1 1 0 TolA binding protein trimerisation Coatomer_WDAD PF04053.14 gi|327310997|ref|YP_004337894.1| - 0.14 11.2 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Coatomer WD associated region Spc7 PF08317.11 gi|327310997|ref|YP_004337894.1| - 0.16 10.8 0.3 0.23 10.3 0.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF1192 PF06698.11 gi|327310997|ref|YP_004337894.1| - 0.16 12.1 0.4 0.41 10.7 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) DUF1640 PF07798.11 gi|327310997|ref|YP_004337894.1| - 0.18 11.9 0.6 0.27 11.3 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) Pyr_redox_2 PF07992.14 gi|327310999|ref|YP_004337896.1| - 2.9e-17 62.9 0.6 4.3e-09 36.0 0.8 2.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327310999|ref|YP_004337896.1| - 3.4e-06 27.2 2.3 6.5e-06 26.3 1.3 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|327310999|ref|YP_004337896.1| - 9.9e-05 21.7 2.9 0.00014 21.2 2.9 1.2 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|327310999|ref|YP_004337896.1| - 0.0021 17.7 7.4 0.0038 16.8 6.4 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|327310999|ref|YP_004337896.1| - 0.0039 16.3 5.5 0.004 16.3 3.8 1.8 2 0 0 2 2 2 1 FAD binding domain TAT_signal PF10518.9 gi|327310999|ref|YP_004337896.1| - 0.0065 16.3 4.5 0.0065 16.3 4.5 2.1 2 0 0 2 2 1 1 TAT (twin-arginine translocation) pathway signal sequence Thi4 PF01946.17 gi|327310999|ref|YP_004337896.1| - 0.016 14.5 0.5 0.032 13.5 0.5 1.4 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|327310999|ref|YP_004337896.1| - 0.031 13.3 2.3 0.052 12.6 2.0 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|327310999|ref|YP_004337896.1| - 0.064 12.6 3.8 0.11 11.8 3.8 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|327310999|ref|YP_004337896.1| - 0.13 10.9 1.3 0.18 10.4 1.3 1.1 1 0 0 1 1 1 0 HI0933-like protein Trp_halogenase PF04820.14 gi|327310999|ref|YP_004337896.1| - 0.15 10.9 1.3 0.2 10.4 1.3 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_oxidored PF12831.7 gi|327310999|ref|YP_004337896.1| - 0.26 10.6 4.4 0.35 10.2 4.4 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|327310999|ref|YP_004337896.1| - 0.44 11.1 2.4 2.3 8.8 2.7 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|327310999|ref|YP_004337896.1| - 0.66 9.2 1.3 2.2 7.4 0.8 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|327311000|ref|YP_004337897.1| - 1e-15 57.7 0.0 1.5e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|327311000|ref|YP_004337897.1| - 0.00018 21.5 0.1 0.05 13.6 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DAO PF01266.24 gi|327311000|ref|YP_004337897.1| - 0.015 14.9 0.1 0.036 13.7 0.1 1.6 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|327311000|ref|YP_004337897.1| - 0.13 12.5 0.1 0.44 10.8 0.1 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|327311000|ref|YP_004337897.1| - 0.16 10.7 0.0 0.47 9.2 0.0 1.7 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.22 gi|327311000|ref|YP_004337897.1| - 0.22 10.5 0.1 3.7 6.5 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF1641 PF07849.11 gi|327311001|ref|YP_004337898.1| - 8.9e-16 57.5 0.2 1.6e-15 56.7 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) WHIM1 PF15612.6 gi|327311001|ref|YP_004337898.1| - 0.43 10.2 2.6 14 5.3 0.1 3.3 3 0 0 3 3 3 0 WSTF, HB1, Itc1p, MBD9 motif 1 Spt5-NGN PF03439.13 gi|327311002|ref|YP_004337899.1| - 0.18 11.7 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Early transcription elongation factor of RNA pol II, NGN section DUF1641 PF07849.11 gi|327311003|ref|YP_004337900.1| - 3.6e-15 55.6 0.1 8.2e-15 54.4 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HALZ PF02183.18 gi|327311003|ref|YP_004337900.1| - 0.0033 17.6 1.3 0.006 16.8 1.3 1.4 1 0 0 1 1 1 1 Homeobox associated leucine zipper Myc-LZ PF02344.15 gi|327311003|ref|YP_004337900.1| - 0.11 12.7 0.4 0.25 11.5 0.4 1.6 1 0 0 1 1 1 0 Myc leucine zipper domain Pyr_redox_2 PF07992.14 gi|327311004|ref|YP_004337901.1| - 1.1e-16 61.0 0.0 5.2e-16 58.7 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327311004|ref|YP_004337901.1| - 3.7e-05 24.2 0.1 0.035 14.7 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327311004|ref|YP_004337901.1| - 0.061 13.6 0.6 5.1 7.4 0.1 3.1 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Acetyltransf_1 PF00583.25 gi|327311005|ref|YP_004337902.1| - 3.2e-16 59.6 0.3 4.1e-16 59.3 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|327311005|ref|YP_004337902.1| - 1.4e-15 57.4 0.0 1.9e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|327311005|ref|YP_004337902.1| - 3.3e-13 49.9 0.2 5.3e-13 49.2 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|327311005|ref|YP_004337902.1| - 6.1e-09 36.7 0.0 7.4e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|327311005|ref|YP_004337902.1| - 6.9e-08 32.8 0.0 8.9e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|327311005|ref|YP_004337902.1| - 2.5e-05 24.1 0.8 0.00011 22.1 0.8 1.9 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|327311005|ref|YP_004337902.1| - 5.5e-05 22.9 0.0 7.9e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|327311005|ref|YP_004337902.1| - 0.0001 22.5 0.9 0.00014 22.0 0.9 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|327311005|ref|YP_004337902.1| - 0.00091 19.3 0.1 0.0038 17.3 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|327311005|ref|YP_004337902.1| - 0.0045 16.7 0.8 0.0062 16.3 0.8 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acyl-CoA_dh_N PF02771.16 gi|327311005|ref|YP_004337902.1| - 0.01 16.5 0.1 0.015 15.9 0.1 1.3 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, N-terminal domain Acetyltransf_CG PF14542.6 gi|327311005|ref|YP_004337902.1| - 0.015 15.4 0.0 0.027 14.6 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF4199 PF13858.6 gi|327311006|ref|YP_004337903.1| - 1.1e-05 25.9 1.9 1.1e-05 25.9 1.9 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) ArAE_2_N PF10337.9 gi|327311006|ref|YP_004337903.1| - 5.9e-05 22.3 1.9 6.7e-05 22.1 1.9 1.1 1 0 0 1 1 1 1 Putative ER transporter, 6TM, N-terminal LysE PF01810.18 gi|327311006|ref|YP_004337903.1| - 0.00014 21.4 2.1 0.00014 21.4 2.1 1.8 2 0 0 2 2 2 1 LysE type translocator DUF2839 PF10999.8 gi|327311006|ref|YP_004337903.1| - 0.01 16.2 2.5 0.01 16.2 2.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2839) RIFIN PF02009.16 gi|327311006|ref|YP_004337903.1| - 0.22 11.4 0.5 0.29 11.0 0.5 1.1 1 0 0 1 1 1 0 Rifin ATP-synt_I PF03899.15 gi|327311006|ref|YP_004337903.1| - 0.43 11.0 17.5 0.35 11.2 5.0 3.0 1 1 2 3 3 3 0 ATP synthase I chain Romo1 PF10247.9 gi|327311006|ref|YP_004337903.1| - 3.4 8.1 10.8 8.1 6.9 0.1 3.1 2 1 1 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 Yip1 PF04893.17 gi|327311006|ref|YP_004337903.1| - 6.8 6.4 19.4 3.4e+02 0.8 19.5 2.2 1 1 0 1 1 1 0 Yip1 domain Gly-zipper_OmpA PF13436.6 gi|327311006|ref|YP_004337903.1| - 8.2 6.3 19.4 0.43 10.4 3.4 3.6 4 0 0 4 4 4 0 Glycine-zipper domain EAL PF00563.20 gi|327311007|ref|YP_004337904.1| - 0.062 12.8 0.0 0.08 12.4 0.0 1.1 1 0 0 1 1 1 0 EAL domain HTH_24 PF13412.6 gi|327311008|ref|YP_004337905.1| - 6.8e-06 25.5 0.0 1.3e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|327311008|ref|YP_004337905.1| - 1.4e-05 24.9 0.0 3.3e-05 23.7 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|327311008|ref|YP_004337905.1| - 3.8e-05 23.5 0.0 8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|327311008|ref|YP_004337905.1| - 8.8e-05 22.3 0.0 0.00016 21.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|327311008|ref|YP_004337905.1| - 0.00011 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|327311008|ref|YP_004337905.1| - 0.00069 19.5 0.0 0.0023 17.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|327311008|ref|YP_004337905.1| - 0.00073 19.6 0.0 0.0016 18.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|327311008|ref|YP_004337905.1| - 0.011 15.6 0.2 0.068 13.0 0.0 2.2 2 1 0 2 2 2 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|327311008|ref|YP_004337905.1| - 0.019 15.3 0.0 0.04 14.3 0.0 1.5 2 0 0 2 2 2 0 FaeA-like protein HTH_45 PF14947.6 gi|327311008|ref|YP_004337905.1| - 0.021 14.8 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DprA_WH PF17782.1 gi|327311008|ref|YP_004337905.1| - 0.022 14.8 0.0 0.099 12.8 0.0 2.0 2 0 0 2 2 2 0 DprA winged helix domain DUF1805 PF08827.11 gi|327311008|ref|YP_004337905.1| - 0.085 13.2 0.1 0.24 11.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1805) ATPase_2 PF01637.18 gi|327311010|ref|YP_004337907.1| - 9.1e-16 58.5 0.0 1.4e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|327311010|ref|YP_004337907.1| - 4.4e-10 40.2 1.6 7.6e-10 39.4 0.3 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|327311010|ref|YP_004337907.1| - 1.3e-08 35.2 0.0 4.6e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|327311010|ref|YP_004337907.1| - 1.8e-07 31.3 0.1 0.017 15.1 0.0 2.6 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|327311010|ref|YP_004337907.1| - 0.11 12.8 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIM PF00121.18 gi|327311011|ref|YP_004337908.1| - 8.8e-11 41.6 0.0 5.1e-10 39.1 0.0 1.9 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|327311011|ref|YP_004337908.1| - 1.6e-05 24.4 1.7 1.6e-05 24.4 0.4 1.7 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|327311011|ref|YP_004337908.1| - 8.4e-05 21.9 0.0 0.00014 21.1 0.0 1.4 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|327311011|ref|YP_004337908.1| - 0.00024 20.6 0.1 0.00076 19.0 0.0 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|327311011|ref|YP_004337908.1| - 0.0003 20.3 4.5 0.00052 19.5 4.5 1.5 1 1 0 1 1 1 1 Nitronate monooxygenase Peripla_BP_6 PF13458.6 gi|327311011|ref|YP_004337908.1| - 0.0035 17.0 0.6 0.006 16.3 0.6 1.4 1 0 0 1 1 1 1 Periplasmic binding protein FMN_dh PF01070.18 gi|327311011|ref|YP_004337908.1| - 0.0038 16.3 2.1 0.0076 15.3 0.1 2.2 2 1 0 2 2 2 1 FMN-dependent dehydrogenase PA PF02225.22 gi|327311011|ref|YP_004337908.1| - 0.1 12.7 1.2 2.7 8.1 0.3 2.7 1 1 1 2 2 2 0 PA domain PcrB PF01884.17 gi|327311011|ref|YP_004337908.1| - 0.12 11.9 0.1 3.6 7.0 0.1 2.1 2 0 0 2 2 2 0 PcrB family Cas_Csy2 PF09614.10 gi|327311012|ref|YP_004337909.1| - 0.08 12.3 0.3 0.2 11.0 0.0 1.6 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csy2) DUF5392 PF17370.2 gi|327311012|ref|YP_004337909.1| - 0.68 10.0 4.6 7.1 6.7 2.6 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5392) DUF1129 PF06570.11 gi|327311012|ref|YP_004337909.1| - 0.75 9.2 6.3 8.8 5.8 4.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) HTH_45 PF14947.6 gi|327311013|ref|YP_004337910.1| - 4.8e-14 52.1 0.0 6.2e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|327311013|ref|YP_004337910.1| - 0.016 14.9 0.0 0.019 14.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_5 PF01022.20 gi|327311013|ref|YP_004337910.1| - 0.056 13.3 0.0 0.091 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|327311013|ref|YP_004337910.1| - 0.069 13.1 0.1 0.1 12.5 0.1 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|327311013|ref|YP_004337910.1| - 0.077 12.9 0.3 0.16 11.9 0.3 1.6 1 1 0 1 1 1 0 MarR family Beta_propel PF09826.9 gi|327311015|ref|YP_004337912.1| - 5.4e-75 253.2 0.0 2.3e-73 247.8 0.0 2.7 1 1 0 1 1 1 1 Beta propeller domain PaREP1 PF05942.11 gi|327311016|ref|YP_004337913.1| - 2.2e-07 30.8 1.1 3.7e-07 30.1 0.9 1.5 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF5618 PF18498.1 gi|327311016|ref|YP_004337913.1| - 0.00014 22.1 0.4 0.00025 21.2 0.1 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF5618) CABIT PF12736.7 gi|327311016|ref|YP_004337913.1| - 0.074 12.3 0.0 0.77 9.0 0.1 1.9 2 0 0 2 2 2 0 Cell-cycle sustaining, positive selection, HEPN PF05168.14 gi|327311016|ref|YP_004337913.1| - 0.078 13.1 2.7 0.13 12.4 2.3 1.6 1 1 0 1 1 1 0 HEPN domain DUF4644 PF15486.6 gi|327311017|ref|YP_004337914.1| - 0.026 14.3 0.6 0.028 14.2 0.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4644) Y_Y_Y PF07495.13 gi|327311018|ref|YP_004337915.1| - 0.027 14.4 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 Y_Y_Y domain NICE-1 PF15845.5 gi|327311018|ref|YP_004337915.1| - 2.8 8.8 6.0 9.2 7.1 1.8 2.4 2 0 0 2 2 2 0 Cysteine-rich C-terminal 1 family PmbA_TldD PF01523.16 gi|327311020|ref|YP_004337917.1| - 8.7e-44 150.4 0.1 1.2e-43 149.9 0.1 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|327311021|ref|YP_004337918.1| - 9.5e-28 97.8 0.1 1.4e-27 97.3 0.1 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Radical_SAM PF04055.21 gi|327311021|ref|YP_004337918.1| - 0.083 13.3 0.0 3.7 7.9 0.0 2.5 2 0 0 2 2 2 0 Radical SAM superfamily PALP PF00291.25 gi|327311022|ref|YP_004337919.1| - 2.9e-37 128.7 0.1 3.5e-37 128.4 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_23 PF13384.6 gi|327311023|ref|YP_004337920.1| - 1.7e-05 24.5 0.1 1.7e-05 24.5 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|327311023|ref|YP_004337920.1| - 0.00013 21.7 0.3 0.00029 20.6 0.3 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|327311023|ref|YP_004337920.1| - 0.00027 20.8 0.0 0.00058 19.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_29 PF13551.6 gi|327311023|ref|YP_004337920.1| - 0.00029 20.8 0.1 0.00058 19.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|327311023|ref|YP_004337920.1| - 0.00059 19.9 0.3 0.0012 18.9 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|327311023|ref|YP_004337920.1| - 0.00092 19.2 0.1 0.0025 17.8 0.1 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|327311023|ref|YP_004337920.1| - 0.0013 18.5 0.1 0.0021 17.8 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|327311023|ref|YP_004337920.1| - 0.0014 18.3 0.0 0.0014 18.3 0.0 2.2 3 0 0 3 3 2 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|327311023|ref|YP_004337920.1| - 0.0022 17.8 0.0 0.0067 16.3 0.0 1.7 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.6 gi|327311023|ref|YP_004337920.1| - 0.0038 16.6 0.6 0.0073 15.7 0.6 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 gi|327311023|ref|YP_004337920.1| - 0.0042 16.6 0.0 0.012 15.2 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|327311023|ref|YP_004337920.1| - 0.0051 16.7 0.3 0.013 15.4 0.3 1.7 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.15 gi|327311023|ref|YP_004337920.1| - 0.014 15.4 0.0 0.029 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Tnp_1 PF01527.20 gi|327311023|ref|YP_004337920.1| - 0.015 15.6 0.3 0.031 14.6 0.3 1.6 1 0 0 1 1 1 0 Transposase HTH_38 PF13936.6 gi|327311023|ref|YP_004337920.1| - 0.019 14.7 0.2 0.019 14.7 0.2 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|327311023|ref|YP_004337920.1| - 0.022 14.8 0.0 0.079 13.0 0.0 2.1 1 1 0 1 1 1 0 HTH domain HTH_10 PF04967.12 gi|327311023|ref|YP_004337920.1| - 0.023 14.5 0.0 0.056 13.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_AsnC-type PF13404.6 gi|327311023|ref|YP_004337920.1| - 0.024 14.5 0.7 0.024 14.5 0.7 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain GerE PF00196.19 gi|327311023|ref|YP_004337920.1| - 0.024 14.2 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|327311023|ref|YP_004337920.1| - 0.025 14.1 0.2 0.025 14.1 0.2 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|327311023|ref|YP_004337920.1| - 0.032 14.3 0.1 0.076 13.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_40 PF14493.6 gi|327311023|ref|YP_004337920.1| - 0.034 14.6 0.0 0.059 13.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|327311023|ref|YP_004337920.1| - 0.04 14.3 3.2 0.04 14.3 3.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|327311023|ref|YP_004337920.1| - 0.063 13.1 0.5 0.12 12.2 0.5 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Fe_dep_repress PF01325.19 gi|327311023|ref|YP_004337920.1| - 0.095 12.9 0.0 0.19 11.9 0.0 1.6 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ATPase PF06745.13 gi|327311024|ref|YP_004337921.1| - 1.1e-83 280.2 0.0 1.3e-83 279.9 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|327311024|ref|YP_004337921.1| - 5.1e-05 22.9 0.2 0.00012 21.7 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|327311024|ref|YP_004337921.1| - 0.0064 16.9 0.5 0.13 12.6 0.5 2.2 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|327311024|ref|YP_004337921.1| - 0.021 14.1 0.3 0.068 12.4 0.2 1.7 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|327311024|ref|YP_004337921.1| - 0.048 12.9 0.0 0.18 11.0 0.0 1.7 2 0 0 2 2 2 0 Rad51 T2SSE PF00437.20 gi|327311024|ref|YP_004337921.1| - 0.084 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MEDS PF14417.6 gi|327311024|ref|YP_004337921.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain PaREP1 PF05942.11 gi|327311025|ref|YP_004337922.1| - 5.4e-25 87.6 0.8 6.9e-25 87.2 0.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SPOR PF05036.13 gi|327311026|ref|YP_004337923.1| - 0.0057 17.0 0.2 0.013 15.9 0.2 1.5 1 0 0 1 1 1 1 Sporulation related domain Exonuc_VII_L PF02601.15 gi|327311026|ref|YP_004337923.1| - 0.076 12.6 3.1 0.11 12.0 3.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Arg_decarbox_C PF17944.1 gi|327311026|ref|YP_004337923.1| - 0.091 13.3 1.3 27 5.4 0.2 3.6 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension Aldedh PF00171.22 gi|327311027|ref|YP_004337924.1| - 9.6e-115 383.7 0.0 1.3e-114 383.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Aldedh PF00171.22 gi|327311028|ref|YP_004337925.1| - 3.2e-120 401.8 0.0 3.7e-120 401.6 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|327311028|ref|YP_004337925.1| - 0.00073 18.7 0.0 0.0018 17.4 0.0 1.4 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) Acylphosphatase PF00708.18 gi|327311029|ref|YP_004337926.1| - 4.9e-19 68.5 0.0 9.5e-19 67.6 0.0 1.5 1 0 0 1 1 1 1 Acylphosphatase AIRS_C PF02769.22 gi|327311029|ref|YP_004337926.1| - 0.093 12.9 0.0 0.26 11.4 0.0 1.9 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain TusA PF01206.17 gi|327311030|ref|YP_004337927.1| - 4.8e-27 93.6 0.0 5.3e-27 93.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|327311030|ref|YP_004337927.1| - 1.4e-07 31.3 0.1 2.8e-07 30.3 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Lipase_GDSL_2 PF13472.6 gi|327311032|ref|YP_004337929.1| - 1e-23 84.6 0.0 1.2e-23 84.4 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.22 gi|327311032|ref|YP_004337929.1| - 4.8e-13 49.5 0.0 6.2e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase NurA PF09376.10 gi|327311033|ref|YP_004337930.1| - 4.2e-38 131.4 0.2 5.7e-38 131.0 0.2 1.1 1 0 0 1 1 1 1 NurA domain AAA_31 PF13614.6 gi|327311034|ref|YP_004337931.1| - 2.9e-14 53.4 0.0 3.9e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|327311034|ref|YP_004337931.1| - 2.3e-13 50.3 0.0 3.3e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|327311034|ref|YP_004337931.1| - 5.8e-07 29.2 0.1 1e-05 25.1 0.3 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|327311034|ref|YP_004337931.1| - 5.2e-06 25.9 0.1 8.1e-06 25.2 0.1 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|327311034|ref|YP_004337931.1| - 5e-05 22.9 0.1 0.00094 18.7 0.3 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|327311034|ref|YP_004337931.1| - 0.0022 17.4 0.1 0.0047 16.2 0.1 1.5 1 0 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.6 gi|327311034|ref|YP_004337931.1| - 0.0027 17.3 0.1 0.0079 15.8 0.1 1.8 2 0 0 2 2 2 1 AAA domain KdpD PF02702.17 gi|327311034|ref|YP_004337931.1| - 0.0057 16.1 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain CLP1_P PF16575.5 gi|327311034|ref|YP_004337931.1| - 0.011 15.6 0.1 0.033 14.0 0.0 1.8 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop SRP54 PF00448.22 gi|327311034|ref|YP_004337931.1| - 0.011 15.3 0.0 0.082 12.5 0.0 2.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain VirC1 PF07015.11 gi|327311034|ref|YP_004337931.1| - 0.018 14.3 0.1 2 7.7 0.1 2.6 3 0 0 3 3 3 0 VirC1 protein MeaB PF03308.16 gi|327311034|ref|YP_004337931.1| - 0.034 13.1 0.7 0.062 12.3 0.2 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|327311034|ref|YP_004337931.1| - 0.074 12.8 0.0 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF3782 PF12644.7 gi|327311035|ref|YP_004337932.1| - 1.5e-14 53.9 10.2 4.8e-13 49.1 9.8 3.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|327311035|ref|YP_004337932.1| - 3.1e-10 39.8 0.5 6.7e-10 38.8 0.5 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Spc7 PF08317.11 gi|327311035|ref|YP_004337932.1| - 0.0018 17.2 2.7 0.0029 16.5 2.7 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein Serine_rich PF08824.10 gi|327311035|ref|YP_004337932.1| - 0.002 18.1 0.1 0.064 13.3 0.0 2.2 2 0 0 2 2 2 1 Serine rich protein interaction domain BLOC1_2 PF10046.9 gi|327311035|ref|YP_004337932.1| - 0.0022 18.3 1.3 0.015 15.6 0.5 2.2 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Nup54 PF13874.6 gi|327311035|ref|YP_004337932.1| - 0.0083 16.2 1.6 0.015 15.4 1.0 1.6 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 ACR_tran PF00873.19 gi|327311035|ref|YP_004337932.1| - 0.011 13.5 0.0 0.013 13.2 0.0 1.1 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family HSBP1 PF06825.12 gi|327311035|ref|YP_004337932.1| - 0.013 15.4 0.0 1.3 9.0 0.0 2.6 1 1 1 2 2 2 0 Heat shock factor binding protein 1 DUF1678 PF07913.11 gi|327311035|ref|YP_004337932.1| - 0.025 14.4 3.1 0.34 10.7 0.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1678) GCN5L1 PF06320.13 gi|327311035|ref|YP_004337932.1| - 0.026 14.7 1.3 0.053 13.7 1.3 1.4 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) Exonuc_VII_L PF02601.15 gi|327311035|ref|YP_004337932.1| - 0.027 14.0 0.1 0.027 14.0 0.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Spectrin PF00435.21 gi|327311035|ref|YP_004337932.1| - 0.03 14.8 2.0 0.03 14.8 2.0 1.6 2 0 0 2 2 1 0 Spectrin repeat PaRep2a PF07903.11 gi|327311035|ref|YP_004337932.1| - 0.033 14.0 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 PaRep2a protein DUF1664 PF07889.12 gi|327311035|ref|YP_004337932.1| - 0.033 14.2 0.1 0.053 13.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) MCPsignal PF00015.21 gi|327311035|ref|YP_004337932.1| - 0.034 14.0 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain HemX PF04375.14 gi|327311035|ref|YP_004337932.1| - 0.05 12.9 0.4 0.072 12.4 0.4 1.1 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF16 PF01519.16 gi|327311035|ref|YP_004337932.1| - 0.051 14.1 0.2 0.22 12.0 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 CdvA PF18822.1 gi|327311035|ref|YP_004337932.1| - 0.061 13.2 2.5 0.17 11.7 2.4 1.8 1 1 1 2 2 2 0 CdvA-like coiled-coil domain IFT57 PF10498.9 gi|327311035|ref|YP_004337932.1| - 0.064 12.2 0.1 0.091 11.7 0.1 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 KxDL PF10241.9 gi|327311035|ref|YP_004337932.1| - 0.072 13.4 0.5 0.22 11.9 0.4 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein CREPT PF16566.5 gi|327311035|ref|YP_004337932.1| - 0.1 12.8 2.1 0.17 12.1 2.1 1.3 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour DUF4527 PF15030.6 gi|327311035|ref|YP_004337932.1| - 0.2 11.0 2.9 0.38 10.1 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4527) ARGLU PF15346.6 gi|327311035|ref|YP_004337932.1| - 0.23 11.3 11.3 0.21 11.4 9.6 1.8 2 0 0 2 2 2 0 Arginine and glutamate-rich 1 Cytochrom_C_2 PF01322.20 gi|327311035|ref|YP_004337932.1| - 0.25 12.2 1.3 0.36 11.7 0.1 1.8 2 0 0 2 2 2 0 Cytochrome C' TMP_2 PF06791.13 gi|327311035|ref|YP_004337932.1| - 0.32 10.7 3.1 0.15 11.7 0.6 1.6 2 0 0 2 2 2 0 Prophage tail length tape measure protein ApoC-I PF04691.12 gi|327311035|ref|YP_004337932.1| - 2.2 8.3 4.2 3.2 7.8 0.2 2.6 2 1 1 3 3 2 0 Apolipoprotein C-I (ApoC-1) AAA_5 PF07728.14 gi|327311037|ref|YP_004337934.1| - 2.3e-21 76.2 0.0 3.9e-21 75.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|327311037|ref|YP_004337934.1| - 4.1e-06 26.5 0.1 7.2e-06 25.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|327311037|ref|YP_004337934.1| - 0.0024 18.3 0.0 0.0039 17.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|327311037|ref|YP_004337934.1| - 0.0093 15.4 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|327311037|ref|YP_004337934.1| - 0.013 15.3 0.0 0.72 9.7 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|327311037|ref|YP_004337934.1| - 0.024 14.2 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|327311037|ref|YP_004337934.1| - 0.042 14.2 0.1 0.14 12.6 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|327311037|ref|YP_004337934.1| - 0.05 13.9 0.0 0.33 11.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|327311037|ref|YP_004337934.1| - 0.13 11.9 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Hpr_kinase_C PF07475.12 gi|327311037|ref|YP_004337934.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain TIP49 PF06068.13 gi|327311037|ref|YP_004337934.1| - 0.2 10.8 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_24 PF13479.6 gi|327311037|ref|YP_004337934.1| - 0.24 11.1 0.0 0.37 10.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Polyketide_cyc2 PF10604.9 gi|327311039|ref|YP_004337936.1| - 0.1 12.9 0.2 0.61 10.3 0.2 2.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Methyltransf_23 PF13489.6 gi|327311040|ref|YP_004337937.1| - 0.0077 16.1 0.0 0.025 14.4 0.0 2.0 2 1 0 2 2 2 1 Methyltransferase domain Aminotran_5 PF00266.19 gi|327311042|ref|YP_004337939.1| - 6e-27 94.6 0.0 8.1e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Hep_core_N PF08290.11 gi|327311042|ref|YP_004337939.1| - 0.11 12.5 0.3 0.24 11.4 0.3 1.6 1 0 0 1 1 1 0 Hepatitis core protein, putative zinc finger MFS_1 PF07690.16 gi|327311043|ref|YP_004337940.1| - 1.9e-33 115.8 104.5 2.4e-27 95.8 59.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|327311043|ref|YP_004337940.1| - 1.3e-06 27.6 30.4 1.8e-05 23.8 11.4 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|327311043|ref|YP_004337940.1| - 0.0047 15.5 9.8 0.0047 15.5 9.8 2.9 1 1 2 3 3 3 1 MFS/sugar transport protein Thioredoxin PF00085.20 gi|327311044|ref|YP_004337941.1| - 0.00016 21.6 0.0 0.00017 21.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|327311044|ref|YP_004337941.1| - 0.0076 16.7 0.4 0.66 10.5 0.4 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|327311044|ref|YP_004337941.1| - 0.054 13.5 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain MFS_1 PF07690.16 gi|327311046|ref|YP_004337943.1| - 3.6e-17 62.3 61.1 7.2e-11 41.6 38.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Thioredoxin_4 PF13462.6 gi|327311047|ref|YP_004337944.1| - 9.8e-16 58.3 0.0 1.5e-15 57.7 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|327311047|ref|YP_004337944.1| - 0.025 14.4 0.1 0.09 12.5 0.0 1.8 2 0 0 2 2 2 0 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|327311047|ref|YP_004337944.1| - 0.049 14.1 0.2 0.21 12.0 0.1 2.1 1 1 1 2 2 2 0 Thioredoxin-like domain AIRS_C PF02769.22 gi|327311048|ref|YP_004337945.1| - 7.4e-24 84.6 0.2 1.2e-23 84.0 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|327311048|ref|YP_004337945.1| - 6e-12 46.1 0.2 1.2e-11 45.2 0.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DrsE PF02635.15 gi|327311049|ref|YP_004337946.1| - 5.6e-05 23.5 0.0 6.2e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|327311050|ref|YP_004337947.1| - 2.5e-09 36.8 0.0 2.7e-09 36.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|327311050|ref|YP_004337947.1| - 0.00028 20.7 0.0 0.00047 20.0 0.0 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) AsnC_trans_reg PF01037.21 gi|327311050|ref|YP_004337947.1| - 0.078 13.0 0.0 0.11 12.5 0.0 1.3 1 1 0 1 1 1 0 Lrp/AsnC ligand binding domain Acetyltransf_1 PF00583.25 gi|327311051|ref|YP_004337948.1| - 6.8e-16 58.6 0.1 1.1e-15 57.9 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|327311051|ref|YP_004337948.1| - 3.4e-08 33.3 0.0 5.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|327311051|ref|YP_004337948.1| - 1.4e-07 31.8 0.0 2.3e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|327311051|ref|YP_004337948.1| - 4.7e-07 29.8 0.0 6.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|327311051|ref|YP_004337948.1| - 1.1e-06 28.9 0.5 1.8e-06 28.2 0.5 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|327311051|ref|YP_004337948.1| - 5.8e-06 26.4 0.0 6.6e-05 23.0 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|327311051|ref|YP_004337948.1| - 2.8e-05 23.9 0.0 4.3e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ GNAT_acetyltran PF12746.7 gi|327311051|ref|YP_004337948.1| - 6.5e-05 22.6 0.0 8.9e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_3 PF13302.7 gi|327311051|ref|YP_004337948.1| - 0.0016 19.1 0.2 0.011 16.4 0.2 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|327311051|ref|YP_004337948.1| - 0.0043 17.1 0.2 0.0069 16.5 0.2 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PIN PF01850.21 gi|327311053|ref|YP_004337950.1| - 0.12 12.8 0.0 0.2 12.2 0.0 1.4 1 0 0 1 1 1 0 PIN domain PALP PF00291.25 gi|327311054|ref|YP_004337951.1| - 2.4e-30 106.0 0.1 1e-29 103.9 0.1 1.8 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF87 PF01935.17 gi|327311055|ref|YP_004337952.1| - 1.2e-17 64.8 0.0 2.1e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|327311055|ref|YP_004337952.1| - 5.1e-10 38.8 0.0 1.6e-08 33.9 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|327311055|ref|YP_004337952.1| - 1.7e-05 25.3 0.0 0.00031 21.2 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain DUF815 PF05673.13 gi|327311055|ref|YP_004337952.1| - 0.0002 20.6 0.0 0.0005 19.3 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|327311055|ref|YP_004337952.1| - 0.0011 19.3 0.0 0.43 10.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.7 gi|327311055|ref|YP_004337952.1| - 0.0012 17.8 0.0 0.49 9.3 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain MMR_HSR1 PF01926.23 gi|327311055|ref|YP_004337952.1| - 0.0064 16.6 0.0 0.018 15.1 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.18 gi|327311055|ref|YP_004337952.1| - 0.0067 15.8 0.0 0.061 12.7 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.27 gi|327311055|ref|YP_004337952.1| - 0.012 16.1 0.0 0.023 15.2 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA PF00004.29 gi|327311055|ref|YP_004337952.1| - 0.029 14.8 0.0 21 5.5 0.0 3.3 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|327311055|ref|YP_004337952.1| - 0.034 13.1 0.1 0.059 12.4 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB T2SSE PF00437.20 gi|327311055|ref|YP_004337952.1| - 0.068 12.2 0.0 0.83 8.7 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein MobB PF03205.14 gi|327311055|ref|YP_004337952.1| - 0.077 12.9 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|327311055|ref|YP_004337952.1| - 0.22 11.4 0.0 0.48 10.3 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|327311055|ref|YP_004337952.1| - 0.23 11.4 0.0 1.4 8.7 0.0 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea CTP-dep_RFKase PF01982.16 gi|327311056|ref|YP_004337953.1| - 7.4e-43 145.5 0.0 1e-42 145.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.7 gi|327311056|ref|YP_004337953.1| - 2e-08 34.0 0.1 4.9e-08 32.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|327311056|ref|YP_004337953.1| - 3e-05 24.0 0.0 9.6e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|327311056|ref|YP_004337953.1| - 4.5e-05 22.9 0.0 7.9e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|327311056|ref|YP_004337953.1| - 0.00015 21.3 0.2 0.0035 17.0 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_8 PF02954.19 gi|327311056|ref|YP_004337953.1| - 0.00078 19.2 2.7 0.0015 18.3 0.5 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_29 PF13551.6 gi|327311056|ref|YP_004337953.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|327311056|ref|YP_004337953.1| - 0.0016 18.3 0.0 0.0035 17.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|327311056|ref|YP_004337953.1| - 0.0024 17.6 0.0 0.0066 16.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain LexA_DNA_bind PF01726.16 gi|327311056|ref|YP_004337953.1| - 0.0042 16.8 0.0 0.31 10.9 0.0 2.9 3 0 0 3 3 3 1 LexA DNA binding domain HTH_28 PF13518.6 gi|327311056|ref|YP_004337953.1| - 0.0043 17.1 0.1 0.012 15.8 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|327311056|ref|YP_004337953.1| - 0.014 15.2 0.0 0.038 13.9 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|327311056|ref|YP_004337953.1| - 0.016 15.1 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain Sigma70_r4_2 PF08281.12 gi|327311056|ref|YP_004337953.1| - 0.025 14.3 0.0 0.081 12.6 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.27 gi|327311056|ref|YP_004337953.1| - 0.038 13.9 0.1 0.084 12.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_CodY PF08222.11 gi|327311056|ref|YP_004337953.1| - 0.04 13.5 0.0 0.1 12.2 0.0 1.7 1 1 0 1 1 1 0 CodY helix-turn-helix domain Sigma70_r4 PF04545.16 gi|327311056|ref|YP_004337953.1| - 0.052 13.1 0.1 0.23 11.0 0.1 2.1 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_34 PF13601.6 gi|327311056|ref|YP_004337953.1| - 0.087 13.0 0.0 4.4 7.5 0.0 2.9 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|327311056|ref|YP_004337953.1| - 0.092 13.2 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3151 PF11349.8 gi|327311056|ref|YP_004337953.1| - 0.094 12.8 0.1 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3151) HTH_30 PF13556.6 gi|327311056|ref|YP_004337953.1| - 0.096 12.5 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Fe_dep_repress PF01325.19 gi|327311056|ref|YP_004337953.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain LZ_Tnp_IS481 PF13011.6 gi|327311056|ref|YP_004337953.1| - 0.13 12.8 0.0 0.26 11.9 0.0 1.4 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 Aldolase_II PF00596.21 gi|327311057|ref|YP_004337954.1| - 3.3e-45 154.3 0.0 3.8e-45 154.1 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain DUF3148 PF11347.8 gi|327311057|ref|YP_004337954.1| - 0.023 14.5 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3148) Trp_halogenase PF04820.14 gi|327311058|ref|YP_004337955.1| - 6e-13 48.4 0.1 2.7e-09 36.4 0.0 2.4 1 1 1 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|327311058|ref|YP_004337955.1| - 2.2e-10 40.2 0.6 0.00013 21.2 0.3 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|327311058|ref|YP_004337955.1| - 9.7e-10 38.2 3.2 0.004 16.5 0.0 3.9 3 1 1 4 4 4 2 FAD binding domain DAO PF01266.24 gi|327311058|ref|YP_004337955.1| - 1.9e-09 37.6 3.6 8.4e-05 22.3 0.1 2.6 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|327311058|ref|YP_004337955.1| - 3.8e-06 26.4 0.2 7.9e-06 25.3 0.1 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|327311058|ref|YP_004337955.1| - 4e-06 26.2 0.1 7.6e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|327311058|ref|YP_004337955.1| - 7.9e-06 26.0 0.1 4.8e-05 23.5 0.0 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|327311058|ref|YP_004337955.1| - 1.1e-05 25.0 2.8 0.00012 21.5 2.8 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|327311058|ref|YP_004337955.1| - 4.1e-05 22.9 0.4 0.0001 21.6 0.0 1.8 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|327311058|ref|YP_004337955.1| - 0.00012 20.9 0.1 0.00018 20.4 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|327311058|ref|YP_004337955.1| - 0.0015 17.7 0.2 0.14 11.2 0.1 2.7 3 0 0 3 3 3 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|327311058|ref|YP_004337955.1| - 0.0033 17.3 0.2 0.0061 16.5 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GMC_oxred_N PF00732.19 gi|327311058|ref|YP_004337955.1| - 0.02 14.3 0.2 0.28 10.5 0.1 2.0 2 0 0 2 2 2 0 GMC oxidoreductase ApbA PF02558.16 gi|327311058|ref|YP_004337955.1| - 0.039 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|327311058|ref|YP_004337955.1| - 0.091 12.3 0.6 0.15 11.7 0.2 1.5 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|327311058|ref|YP_004337955.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Hjc PF01870.18 gi|327311059|ref|YP_004337956.1| - 1.3e-27 95.6 0.1 1.6e-27 95.3 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|327311059|ref|YP_004337956.1| - 0.08 13.4 0.0 0.39 11.2 0.0 1.9 2 0 0 2 2 2 0 Nuclease-related domain Lactamase_B_3 PF13483.6 gi|327311061|ref|YP_004337958.1| - 5.3e-25 88.2 0.0 7.4e-25 87.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|327311061|ref|YP_004337958.1| - 5e-23 81.7 0.1 6.6e-23 81.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|327311061|ref|YP_004337958.1| - 1.8e-07 31.4 2.8 2e-06 27.9 2.8 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily ACOX PF01756.19 gi|327311062|ref|YP_004337959.1| - 0.17 11.4 0.4 2.3 7.8 0.0 2.1 2 0 0 2 2 2 0 Acyl-CoA oxidase TBP PF00352.21 gi|327311063|ref|YP_004337960.1| - 3.7e-62 206.3 0.0 7.1e-30 102.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|327311063|ref|YP_004337960.1| - 0.0019 18.3 0.0 0.032 14.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) RTT107_BRCT_5 PF16770.5 gi|327311063|ref|YP_004337960.1| - 0.15 11.9 0.0 5.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Regulator of Ty1 transposition protein 107 BRCT domain Ribosomal_S25 PF03297.15 gi|327311064|ref|YP_004337961.1| - 4.7e-17 62.0 4.0 5.6e-17 61.8 4.0 1.1 1 0 0 1 1 1 1 S25 ribosomal protein GntR PF00392.21 gi|327311064|ref|YP_004337961.1| - 0.00036 20.1 0.0 0.00068 19.2 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family SpoIIP PF07454.11 gi|327311064|ref|YP_004337961.1| - 0.0013 18.3 0.1 0.0015 18.1 0.1 1.0 1 0 0 1 1 1 1 Stage II sporulation protein P (SpoIIP) TrmB PF01978.19 gi|327311064|ref|YP_004337961.1| - 0.015 15.1 0.1 0.029 14.2 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ATP-synt_E PF05680.12 gi|327311064|ref|YP_004337961.1| - 0.02 15.2 3.5 0.025 14.9 3.5 1.2 1 0 0 1 1 1 0 ATP synthase E chain Rrf2 PF02082.20 gi|327311064|ref|YP_004337961.1| - 0.025 14.9 0.3 0.044 14.1 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator DDRGK PF09756.9 gi|327311064|ref|YP_004337961.1| - 0.03 13.9 8.8 0.25 10.9 8.8 1.9 1 1 0 1 1 1 0 DDRGK domain FlaG PF03646.15 gi|327311064|ref|YP_004337961.1| - 0.048 13.8 2.9 0.063 13.4 2.9 1.1 1 0 0 1 1 1 0 FlaG protein PIN_12 PF16289.5 gi|327311064|ref|YP_004337961.1| - 0.14 12.7 0.7 0.16 12.4 0.7 1.2 1 0 0 1 1 1 0 PIN domain FtsK_alpha PF17854.1 gi|327311064|ref|YP_004337961.1| - 0.26 11.5 4.2 1.1 9.4 4.2 1.8 1 1 0 1 1 1 0 FtsK alpha domain DUF2076 PF09849.9 gi|327311065|ref|YP_004337962.1| - 0.03 14.4 4.1 0.039 14.0 4.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) DUF2868 PF11067.8 gi|327311065|ref|YP_004337962.1| - 0.068 12.7 1.9 0.088 12.3 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) Sec61_beta PF03911.16 gi|327311065|ref|YP_004337962.1| - 0.18 11.9 0.0 0.41 10.7 0.0 1.6 1 0 0 1 1 1 0 Sec61beta family FaeA PF04703.12 gi|327311066|ref|YP_004337963.1| - 8.1e-09 35.7 0.1 9.7e-09 35.5 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.6 gi|327311066|ref|YP_004337963.1| - 3.5e-08 32.9 0.0 4.7e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|327311066|ref|YP_004337963.1| - 1.3e-07 31.4 0.1 1.5e-07 31.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|327311066|ref|YP_004337963.1| - 1.6e-06 27.8 0.0 2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|327311066|ref|YP_004337963.1| - 4.8e-06 26.4 0.1 6.9e-06 25.9 0.1 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|327311066|ref|YP_004337963.1| - 1.2e-05 25.0 0.0 1.8e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|327311066|ref|YP_004337963.1| - 4.2e-05 23.5 0.0 5.8e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|327311066|ref|YP_004337963.1| - 5.5e-05 23.0 0.0 8.1e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|327311066|ref|YP_004337963.1| - 8.3e-05 23.0 0.1 0.00012 22.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|327311066|ref|YP_004337963.1| - 0.00013 21.7 0.2 0.00036 20.2 0.2 1.7 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_9 PF08221.11 gi|327311066|ref|YP_004337963.1| - 0.00031 20.8 0.1 0.00041 20.4 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Replic_Relax PF13814.6 gi|327311066|ref|YP_004337963.1| - 0.0004 20.5 0.0 0.00045 20.3 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation B-block_TFIIIC PF04182.12 gi|327311066|ref|YP_004337963.1| - 0.0011 19.1 0.0 0.0013 18.8 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF977 PF06163.11 gi|327311066|ref|YP_004337963.1| - 0.0015 18.5 0.1 0.0015 18.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_23 PF13384.6 gi|327311066|ref|YP_004337963.1| - 0.0015 18.3 0.0 0.0043 16.8 0.0 1.7 1 1 1 2 2 2 1 Homeodomain-like domain HTH_46 PF15977.5 gi|327311066|ref|YP_004337963.1| - 0.0018 18.2 0.2 0.0057 16.6 0.2 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA binding DUF2250 PF10007.9 gi|327311066|ref|YP_004337963.1| - 0.0019 18.3 0.3 0.0022 18.1 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.20 gi|327311066|ref|YP_004337963.1| - 0.0029 17.9 0.0 0.0038 17.5 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_29 PF13551.6 gi|327311066|ref|YP_004337963.1| - 0.003 17.6 0.0 0.0034 17.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn helix Penicillinase_R PF03965.16 gi|327311066|ref|YP_004337963.1| - 0.0041 17.5 0.2 0.005 17.2 0.2 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_45 PF14947.6 gi|327311066|ref|YP_004337963.1| - 0.0049 16.8 0.1 0.0056 16.6 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|327311066|ref|YP_004337963.1| - 0.005 16.8 0.1 0.0063 16.4 0.1 1.2 1 0 0 1 1 1 1 HTH domain PheRS_DBD1 PF18552.1 gi|327311066|ref|YP_004337963.1| - 0.009 15.7 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 PheRS DNA binding domain 1 TFIIE_alpha PF02002.17 gi|327311066|ref|YP_004337963.1| - 0.01 15.7 0.2 0.013 15.3 0.2 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.6 gi|327311066|ref|YP_004337963.1| - 0.018 15.2 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Chal_sti_synt_C PF02797.15 gi|327311066|ref|YP_004337963.1| - 0.027 14.4 0.1 0.03 14.3 0.1 1.0 1 0 0 1 1 1 0 Chalcone and stilbene synthases, C-terminal domain RNA_pol_Rpc34 PF05158.12 gi|327311066|ref|YP_004337963.1| - 0.028 13.8 0.1 0.049 13.0 0.0 1.3 1 1 0 1 1 1 0 RNA polymerase Rpc34 subunit HTH_micro PF17007.5 gi|327311066|ref|YP_004337963.1| - 0.034 13.0 0.1 0.034 13.0 0.1 1.0 1 0 0 1 1 1 0 HTH-like HTH_34 PF13601.6 gi|327311066|ref|YP_004337963.1| - 0.035 14.3 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1013 PF06242.11 gi|327311066|ref|YP_004337963.1| - 0.035 14.2 0.0 0.043 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) Rio2_N PF09202.11 gi|327311066|ref|YP_004337963.1| - 0.043 14.0 0.1 0.053 13.8 0.1 1.2 1 0 0 1 1 1 0 Rio2, N-terminal HTH_39 PF14090.6 gi|327311066|ref|YP_004337963.1| - 0.046 13.5 0.1 0.094 12.5 0.1 1.6 1 1 1 2 2 2 0 Helix-turn-helix domain CtsR PF05848.11 gi|327311066|ref|YP_004337963.1| - 0.053 13.4 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 CtsR N-terminal HTH domain AbiEi_4 PF13338.6 gi|327311066|ref|YP_004337963.1| - 0.062 13.5 0.0 0.084 13.0 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin PadR PF03551.14 gi|327311066|ref|YP_004337963.1| - 0.064 13.2 0.1 0.11 12.5 0.1 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_12 PF08461.10 gi|327311066|ref|YP_004337963.1| - 0.07 13.1 0.3 0.25 11.3 0.3 1.9 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.6 gi|327311066|ref|YP_004337963.1| - 0.071 13.1 0.1 0.092 12.7 0.1 1.3 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_rep_O PF04492.13 gi|327311066|ref|YP_004337963.1| - 0.08 13.5 0.1 0.093 13.3 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage replication protein O DUF2513 PF10711.9 gi|327311066|ref|YP_004337963.1| - 0.088 13.1 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) FUR PF01475.19 gi|327311066|ref|YP_004337963.1| - 0.091 12.9 0.1 0.11 12.6 0.1 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family ACP_syn_III_C PF08541.10 gi|327311067|ref|YP_004337964.1| - 4.6e-15 55.5 0.0 7.6e-14 51.7 0.0 2.2 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|327311067|ref|YP_004337964.1| - 2.3e-06 27.2 0.0 9.3e-06 25.2 0.0 1.7 2 0 0 2 2 2 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|327311067|ref|YP_004337964.1| - 1.2e-05 25.1 0.0 7e-05 22.6 0.0 1.9 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|327311067|ref|YP_004337964.1| - 0.018 14.9 0.6 0.16 11.8 0.1 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|327311068|ref|YP_004337965.1| - 2.6e-13 49.8 0.0 3.9e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|327311068|ref|YP_004337965.1| - 1.1e-12 47.6 1.3 1.9e-12 46.8 1.3 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) YhfH PF14149.6 gi|327311068|ref|YP_004337965.1| - 0.0053 16.7 0.4 1.2 9.2 0.0 2.5 2 0 0 2 2 2 1 YhfH-like protein zinc_ribbon_2 PF13240.6 gi|327311068|ref|YP_004337965.1| - 0.006 16.3 4.4 0.01 15.5 4.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|327311068|ref|YP_004337965.1| - 0.0061 16.6 1.0 0.0076 16.3 0.2 1.5 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|327311068|ref|YP_004337965.1| - 0.0089 15.5 0.9 0.21 11.2 0.0 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.7 gi|327311068|ref|YP_004337965.1| - 0.021 14.9 0.2 0.031 14.3 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|327311068|ref|YP_004337965.1| - 0.026 14.4 0.6 4.3 7.4 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|327311068|ref|YP_004337965.1| - 0.034 13.5 1.3 0.11 11.9 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger TackOD1 PF18551.1 gi|327311068|ref|YP_004337965.1| - 0.12 12.1 0.2 0.17 11.6 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|327311068|ref|YP_004337965.1| - 0.13 12.4 5.5 0.6 10.3 5.5 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|327311068|ref|YP_004337965.1| - 0.15 11.5 5.5 0.49 9.9 5.7 1.7 1 1 1 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|327311068|ref|YP_004337965.1| - 0.16 11.9 1.5 2.1 8.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|327311068|ref|YP_004337965.1| - 0.45 10.5 0.2 0.45 10.5 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Med27 PF11571.8 gi|327311068|ref|YP_004337965.1| - 0.48 10.8 2.3 2 8.8 2.3 1.9 1 1 0 1 1 1 0 Mediator complex subunit 27 Rubredoxin_2 PF18073.1 gi|327311068|ref|YP_004337965.1| - 0.77 9.5 3.9 1.7 8.4 3.9 1.5 1 1 0 1 1 1 0 Rubredoxin metal binding domain zinc_ribbon_5 PF13719.6 gi|327311068|ref|YP_004337965.1| - 0.97 9.3 5.4 12 5.7 0.5 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|327311068|ref|YP_004337965.1| - 1.3 9.2 5.8 3.1 7.9 0.9 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-NADH-PPase PF09297.11 gi|327311068|ref|YP_004337965.1| - 4.4 7.0 6.1 16 5.2 0.6 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Thiolase_N PF00108.23 gi|327311069|ref|YP_004337966.1| - 6.1e-12 45.5 0.8 1.5e-11 44.1 0.8 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|327311069|ref|YP_004337966.1| - 2.2e-05 24.1 0.0 5.2e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|327311069|ref|YP_004337966.1| - 0.015 15.1 1.1 1.1 9.1 0.1 3.0 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Cas_APE2256 PF09651.10 gi|327311069|ref|YP_004337966.1| - 0.1 12.5 0.5 0.34 10.8 0.0 2.1 3 0 0 3 3 3 0 CRISPR-associated protein (Cas_APE2256) Ketoacyl-synt_C PF02801.22 gi|327311069|ref|YP_004337966.1| - 0.26 11.3 4.1 0.6 10.1 0.0 3.0 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain HMG-CoA_red PF00368.18 gi|327311070|ref|YP_004337967.1| - 3.6e-130 434.2 0.6 4.1e-130 434.1 0.6 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DNA_pol_B PF00136.21 gi|327311072|ref|YP_004337969.1| - 5.5e-52 177.0 0.0 1.3e-51 175.8 0.0 1.5 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|327311072|ref|YP_004337969.1| - 2.7e-27 95.8 0.0 5.8e-27 94.7 0.0 1.4 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|327311072|ref|YP_004337969.1| - 7.3e-05 22.5 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|327311072|ref|YP_004337969.1| - 9.8e-05 22.4 0.0 0.00027 21.0 0.0 1.8 1 0 0 1 1 1 1 RNase_H superfamily Vps5 PF09325.10 gi|327311072|ref|YP_004337969.1| - 0.059 12.9 0.4 0.12 11.9 0.4 1.4 1 0 0 1 1 1 0 Vps5 C terminal like DUF348 PF03990.14 gi|327311072|ref|YP_004337969.1| - 0.078 12.7 0.1 0.65 9.8 0.0 2.4 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain DUF2286 PF10051.9 gi|327311073|ref|YP_004337970.1| - 3.1e-42 143.6 1.4 3.4e-42 143.5 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) CDP-OH_P_transf PF01066.21 gi|327311074|ref|YP_004337971.1| - 6e-06 26.9 0.8 6e-06 26.9 0.8 2.3 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Ribosomal_S26e PF01283.19 gi|327311075|ref|YP_004337972.1| - 5.5e-30 104.0 0.6 6.8e-30 103.7 0.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.17 gi|327311075|ref|YP_004337972.1| - 0.003 17.5 0.3 1.1 9.3 0.0 2.4 2 0 0 2 2 2 2 Prokaryotic dksA/traR C4-type zinc finger Methyltrn_RNA_2 PF04013.12 gi|327311076|ref|YP_004337973.1| - 1.7e-05 24.6 0.0 2.7e-05 24.0 0.0 1.3 1 1 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase tRNA-synt_2b PF00587.25 gi|327311077|ref|YP_004337974.1| - 2e-24 86.6 0.0 2.8e-24 86.1 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|327311077|ref|YP_004337974.1| - 7.8e-24 83.6 0.2 1.4e-23 82.8 0.2 1.4 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|327311077|ref|YP_004337974.1| - 7.8e-09 35.6 0.0 1.6e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal IMS_C PF11799.8 gi|327311077|ref|YP_004337974.1| - 0.0086 16.8 0.1 0.019 15.6 0.1 1.5 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain GCD14 PF08704.10 gi|327311078|ref|YP_004337975.1| - 3e-33 115.5 0.0 3.8e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|327311078|ref|YP_004337975.1| - 3.4e-09 36.8 0.0 4.1e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|327311078|ref|YP_004337975.1| - 7.2e-07 29.1 0.0 9.4e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327311078|ref|YP_004337975.1| - 3.6e-05 24.3 0.1 8.3e-05 23.2 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327311078|ref|YP_004337975.1| - 0.00014 22.5 0.0 0.00033 21.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|327311078|ref|YP_004337975.1| - 0.0028 17.6 0.1 0.0051 16.8 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_24 PF13578.6 gi|327311078|ref|YP_004337975.1| - 0.014 16.4 0.2 0.042 14.9 0.1 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|327311078|ref|YP_004337975.1| - 0.063 12.4 0.0 0.099 11.8 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase ADH_zinc_N_2 PF13602.6 gi|327311078|ref|YP_004337975.1| - 0.07 14.2 0.1 0.2 12.7 0.1 1.8 2 0 0 2 2 2 0 Zinc-binding dehydrogenase Ubie_methyltran PF01209.18 gi|327311078|ref|YP_004337975.1| - 0.075 12.4 0.0 0.14 11.5 0.0 1.4 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family CxxCxxCC PF03692.15 gi|327311079|ref|YP_004337976.1| - 0.00012 22.7 0.0 0.00018 22.1 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain ABC_tran PF00005.27 gi|327311080|ref|YP_004337977.1| - 9.9e-32 110.3 0.0 1.3e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|327311080|ref|YP_004337977.1| - 5e-21 75.0 0.6 5e-21 75.0 0.6 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|327311080|ref|YP_004337977.1| - 4.5e-05 23.4 0.6 0.4 10.5 0.0 2.5 1 1 2 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|327311080|ref|YP_004337977.1| - 0.0003 21.2 0.0 0.00077 19.9 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|327311080|ref|YP_004337977.1| - 0.00089 19.5 0.6 0.0034 17.7 0.6 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|327311080|ref|YP_004337977.1| - 0.0011 18.5 0.1 0.028 13.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|327311080|ref|YP_004337977.1| - 0.0084 15.8 0.1 0.015 15.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|327311080|ref|YP_004337977.1| - 0.0086 16.0 0.4 0.03 14.3 0.5 1.8 1 1 1 2 2 2 1 NACHT domain AAA_13 PF13166.6 gi|327311080|ref|YP_004337977.1| - 0.0095 14.6 0.4 0.14 10.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|327311080|ref|YP_004337977.1| - 0.013 14.9 0.0 0.024 14.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Exog_C PF18026.1 gi|327311080|ref|YP_004337977.1| - 0.014 15.4 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Endo/exonuclease (EXOG) C-terminal domain MobB PF03205.14 gi|327311080|ref|YP_004337977.1| - 0.017 15.0 0.2 0.029 14.3 0.2 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF87 PF01935.17 gi|327311080|ref|YP_004337977.1| - 0.039 14.0 0.2 0.07 13.2 0.2 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_33 PF13671.6 gi|327311080|ref|YP_004337977.1| - 0.12 12.6 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|327311080|ref|YP_004337977.1| - 0.17 10.9 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ATPase PF06745.13 gi|327311080|ref|YP_004337977.1| - 0.18 11.2 0.0 0.32 10.3 0.0 1.3 1 0 0 1 1 1 0 KaiC RsgA_GTPase PF03193.16 gi|327311080|ref|YP_004337977.1| - 0.18 11.7 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|327311080|ref|YP_004337977.1| - 0.21 11.3 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|327311081|ref|YP_004337978.1| - 4.1e-32 111.5 0.0 5.6e-32 111.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|327311081|ref|YP_004337978.1| - 7.3e-18 64.9 0.1 1.3e-17 64.0 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|327311081|ref|YP_004337978.1| - 9.9e-11 42.0 0.0 5.3e-07 29.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327311081|ref|YP_004337978.1| - 5.2e-07 29.3 0.2 0.0022 17.4 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|327311081|ref|YP_004337978.1| - 2.8e-05 23.6 0.3 0.012 15.1 0.2 2.3 2 0 0 2 2 2 2 Bacterial TniB protein IstB_IS21 PF01695.17 gi|327311081|ref|YP_004337978.1| - 3.6e-05 23.6 0.2 0.016 15.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|327311081|ref|YP_004337978.1| - 8.3e-05 22.9 0.1 0.015 15.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|327311081|ref|YP_004337978.1| - 0.00021 21.1 0.2 0.024 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|327311081|ref|YP_004337978.1| - 0.00023 20.9 0.0 0.00043 20.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|327311081|ref|YP_004337978.1| - 0.00026 19.9 0.2 0.034 12.9 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class NACHT PF05729.12 gi|327311081|ref|YP_004337978.1| - 0.00074 19.5 0.2 0.0035 17.3 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 gi|327311081|ref|YP_004337978.1| - 0.0019 18.6 0.1 0.003 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|327311081|ref|YP_004337978.1| - 0.0021 18.6 0.0 0.0032 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|327311081|ref|YP_004337978.1| - 0.0027 17.8 0.0 0.0054 16.8 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_5 PF07728.14 gi|327311081|ref|YP_004337978.1| - 0.0061 16.6 0.0 0.023 14.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|327311081|ref|YP_004337978.1| - 0.012 15.5 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|327311081|ref|YP_004337978.1| - 0.023 14.8 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|327311081|ref|YP_004337978.1| - 0.036 13.6 0.2 0.1 12.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|327311081|ref|YP_004337978.1| - 0.04 13.1 0.3 0.047 12.9 0.3 1.3 1 1 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.20 gi|327311081|ref|YP_004337978.1| - 0.044 13.7 0.1 0.39 10.6 0.0 2.4 2 1 1 3 3 3 0 Adenylylsulphate kinase DEAD PF00270.29 gi|327311081|ref|YP_004337978.1| - 0.045 13.5 0.0 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 DEAD/DEAH box helicase Sigma54_activat PF00158.26 gi|327311081|ref|YP_004337978.1| - 0.057 13.1 0.3 0.16 11.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_15 PF13175.6 gi|327311081|ref|YP_004337978.1| - 0.064 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|327311081|ref|YP_004337978.1| - 0.074 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.21 gi|327311081|ref|YP_004337978.1| - 0.095 12.1 0.0 2.5 7.4 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.12 gi|327311081|ref|YP_004337978.1| - 0.099 11.9 0.0 0.23 10.7 0.0 1.5 1 1 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|327311081|ref|YP_004337978.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.29 gi|327311081|ref|YP_004337978.1| - 0.15 12.5 0.0 0.62 10.5 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|327311081|ref|YP_004337978.1| - 0.17 12.1 0.0 0.79 10.0 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|327311081|ref|YP_004337978.1| - 0.17 12.4 0.1 0.74 10.4 0.0 1.9 1 1 1 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|327311081|ref|YP_004337978.1| - 0.18 11.5 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Dynamin_N PF00350.23 gi|327311081|ref|YP_004337978.1| - 0.2 11.7 0.0 0.38 10.8 0.0 1.4 1 0 0 1 1 1 0 Dynamin family BPD_transp_1 PF00528.22 gi|327311082|ref|YP_004337979.1| - 1.9e-21 76.7 19.5 1.9e-21 76.7 19.5 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|327311083|ref|YP_004337980.1| - 2.4e-24 86.1 16.4 2.4e-24 86.1 16.4 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Glyco_hydro_36 PF17167.4 gi|327311083|ref|YP_004337980.1| - 0.13 10.9 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase 36 superfamily, catalytic domain SBP_bac_5 PF00496.22 gi|327311084|ref|YP_004337981.1| - 3.9e-14 52.4 1.1 2.4e-08 33.3 0.3 3.5 2 2 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle FlgD_ig PF13860.6 gi|327311084|ref|YP_004337981.1| - 0.052 13.4 0.1 0.14 12.1 0.1 1.7 1 0 0 1 1 1 0 FlgD Ig-like domain MG2 PF01835.19 gi|327311084|ref|YP_004337981.1| - 0.066 13.7 0.0 0.3 11.6 0.1 2.1 2 0 0 2 2 2 0 MG2 domain NRN1 PF15056.6 gi|327311084|ref|YP_004337981.1| - 0.19 11.8 0.0 0.41 10.8 0.0 1.4 1 0 0 1 1 1 0 Neuritin protein family Peptidase_M56 PF05569.11 gi|327311085|ref|YP_004337982.1| - 0.0086 15.3 0.6 0.012 14.8 0.6 1.2 1 0 0 1 1 1 1 BlaR1 peptidase M56 CitMHS PF03600.16 gi|327311086|ref|YP_004337983.1| - 1.6e-27 96.5 21.9 2.3e-27 96.0 21.9 1.2 1 0 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|327311086|ref|YP_004337983.1| - 9.1e-05 22.2 0.0 0.00021 21.1 0.0 1.7 1 0 0 1 1 1 1 TrkA-C domain FAM163 PF15069.6 gi|327311087|ref|YP_004337984.1| - 0.07 13.6 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 FAM163 family BclA_C PF18573.1 gi|327311087|ref|YP_004337984.1| - 0.089 12.7 0.3 0.25 11.3 0.0 1.8 2 0 0 2 2 2 0 BclA C-terminal domain Trp_oprn_chp PF09534.10 gi|327311087|ref|YP_004337984.1| - 0.093 12.5 1.8 0.13 12.0 1.8 1.2 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) TnpW PF14202.6 gi|327311087|ref|YP_004337984.1| - 0.11 12.3 0.3 2.7 7.9 0.1 2.6 2 0 0 2 2 2 0 Transposon-encoded protein TnpW NTP_transf_2 PF01909.23 gi|327311088|ref|YP_004337985.1| - 4.4e-08 33.3 0.0 5.8e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327311088|ref|YP_004337985.1| - 5e-06 26.5 0.0 6.2e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|327311088|ref|YP_004337985.1| - 0.043 13.6 0.0 0.063 13.1 0.0 1.5 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|327311089|ref|YP_004337986.1| - 2.5e-28 98.6 0.8 2.8e-28 98.4 0.8 1.0 1 0 0 1 1 1 1 HEPN domain DUF72 PF01904.18 gi|327311090|ref|YP_004337987.1| - 2.2e-44 152.2 0.1 2.8e-44 151.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF995 PF06191.12 gi|327311090|ref|YP_004337987.1| - 0.12 12.0 0.6 0.72 9.5 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF995) Aldo_ket_red PF00248.21 gi|327311091|ref|YP_004337988.1| - 2.1e-75 253.7 0.0 2.4e-75 253.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family OTCace PF00185.24 gi|327311092|ref|YP_004337989.1| - 2.4e-54 183.7 0.0 1.5e-51 174.5 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|327311092|ref|YP_004337989.1| - 2.6e-43 147.6 0.0 3.7e-43 147.1 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XdhC_C PF13478.6 gi|327311092|ref|YP_004337989.1| - 0.012 16.1 0.0 0.88 10.1 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain Peripla_BP_6 PF13458.6 gi|327311094|ref|YP_004337991.1| - 4.2e-47 161.5 0.8 4.9e-47 161.3 0.8 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|327311094|ref|YP_004337991.1| - 2.9e-21 75.9 0.0 4.8e-21 75.2 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain BPD_transp_2 PF02653.16 gi|327311095|ref|YP_004337992.1| - 3.8e-29 101.7 42.0 4.3e-29 101.5 42.0 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component AAA_lid_2 PF17863.1 gi|327311095|ref|YP_004337992.1| - 1.2 9.1 4.8 2.7 7.9 0.1 2.5 2 0 0 2 2 2 0 AAA lid domain BPD_transp_2 PF02653.16 gi|327311096|ref|YP_004337993.1| - 7.4e-20 71.2 30.5 7.4e-20 71.2 30.5 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2929 PF11151.8 gi|327311096|ref|YP_004337993.1| - 0.087 13.1 1.0 0.087 13.1 1.0 4.0 4 1 1 5 5 5 0 Protein of unknown function (DUF2929) Pam17 PF08566.10 gi|327311096|ref|YP_004337993.1| - 2.9 7.7 4.1 1.1 9.0 0.2 2.1 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 ABC_tran PF00005.27 gi|327311097|ref|YP_004337994.1| - 1.1e-30 106.9 0.0 1.4e-30 106.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327311097|ref|YP_004337994.1| - 1.2e-12 48.3 1.5 1.8e-05 24.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327311097|ref|YP_004337994.1| - 2.8e-07 30.2 0.5 0.00072 19.1 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|327311097|ref|YP_004337994.1| - 2.7e-05 24.7 0.1 4.5e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|327311097|ref|YP_004337994.1| - 4.5e-05 23.1 0.1 8.3e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|327311097|ref|YP_004337994.1| - 0.00011 22.6 0.5 0.00032 21.1 0.5 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|327311097|ref|YP_004337994.1| - 0.00037 20.3 1.0 0.0014 18.4 0.5 2.0 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|327311097|ref|YP_004337994.1| - 0.00048 20.2 0.1 0.00088 19.3 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|327311097|ref|YP_004337994.1| - 0.00049 19.9 0.1 0.00089 19.0 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA PF00004.29 gi|327311097|ref|YP_004337994.1| - 0.0011 19.4 0.2 0.0052 17.2 0.2 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|327311097|ref|YP_004337994.1| - 0.002 17.2 0.4 0.026 13.6 0.1 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_15 PF13175.6 gi|327311097|ref|YP_004337994.1| - 0.0027 17.5 0.0 0.0035 17.1 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|327311097|ref|YP_004337994.1| - 0.0031 17.4 0.3 0.006 16.5 0.1 1.5 2 0 0 2 2 1 1 RsgA GTPase AAA_22 PF13401.6 gi|327311097|ref|YP_004337994.1| - 0.0063 16.8 0.5 0.061 13.6 0.5 2.1 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.23 gi|327311097|ref|YP_004337994.1| - 0.01 15.9 0.4 0.03 14.4 0.1 1.7 2 0 0 2 2 2 0 Dynamin family cobW PF02492.19 gi|327311097|ref|YP_004337994.1| - 0.013 15.1 0.2 0.069 12.7 0.2 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|327311097|ref|YP_004337994.1| - 0.015 15.2 0.0 0.11 12.4 0.1 2.1 2 0 0 2 2 2 0 NACHT domain DUF3584 PF12128.8 gi|327311097|ref|YP_004337994.1| - 0.017 12.7 0.1 0.022 12.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.6 gi|327311097|ref|YP_004337994.1| - 0.02 15.1 0.1 0.066 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain FeoB_N PF02421.18 gi|327311097|ref|YP_004337994.1| - 0.023 14.2 0.1 0.04 13.4 0.1 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B SRP54 PF00448.22 gi|327311097|ref|YP_004337994.1| - 0.024 14.3 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|327311097|ref|YP_004337994.1| - 0.028 14.2 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|327311097|ref|YP_004337994.1| - 0.031 13.5 0.0 0.073 12.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|327311097|ref|YP_004337994.1| - 0.036 14.3 1.7 0.12 12.6 0.2 2.1 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|327311097|ref|YP_004337994.1| - 0.043 13.2 0.0 0.078 12.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|327311097|ref|YP_004337994.1| - 0.062 13.0 1.4 0.98 9.1 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DLIC PF05783.11 gi|327311097|ref|YP_004337994.1| - 0.094 11.5 0.1 0.15 10.8 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|327311097|ref|YP_004337994.1| - 0.14 12.1 1.8 0.19 11.6 0.1 1.9 2 0 0 2 2 2 0 NTPase AAA_7 PF12775.7 gi|327311097|ref|YP_004337994.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MobB PF03205.14 gi|327311097|ref|YP_004337994.1| - 0.17 11.8 1.3 0.65 9.9 0.1 2.3 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_27 PF13514.6 gi|327311097|ref|YP_004337994.1| - 0.18 11.4 0.1 0.38 10.3 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|327311097|ref|YP_004337994.1| - 0.19 12.1 0.9 0.52 10.6 0.1 2.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|327311098|ref|YP_004337995.1| - 5.9e-29 101.3 0.0 8e-29 100.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327311098|ref|YP_004337995.1| - 9.7e-10 38.7 0.0 0.0007 19.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327311098|ref|YP_004337995.1| - 1.2e-05 24.9 0.2 0.12 11.8 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|327311098|ref|YP_004337995.1| - 0.00023 21.7 0.0 0.00032 21.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|327311098|ref|YP_004337995.1| - 0.00045 19.9 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|327311098|ref|YP_004337995.1| - 0.0018 18.1 0.0 0.0022 17.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327311098|ref|YP_004337995.1| - 0.0024 18.1 0.3 0.0088 16.3 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|327311098|ref|YP_004337995.1| - 0.0028 18.1 0.1 0.01 16.2 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|327311098|ref|YP_004337995.1| - 0.016 15.6 0.2 0.022 15.1 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|327311098|ref|YP_004337995.1| - 0.017 14.8 0.2 0.028 14.0 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|327311098|ref|YP_004337995.1| - 0.042 13.8 0.1 0.28 11.1 0.1 2.0 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|327311098|ref|YP_004337995.1| - 0.042 13.4 0.3 0.06 12.9 0.3 1.3 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|327311098|ref|YP_004337995.1| - 0.051 13.5 0.0 0.31 10.9 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|327311098|ref|YP_004337995.1| - 0.069 13.4 0.1 0.13 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|327311098|ref|YP_004337995.1| - 0.079 13.3 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|327311098|ref|YP_004337995.1| - 0.1 11.4 0.0 0.14 10.9 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SbcCD_C PF13558.6 gi|327311098|ref|YP_004337995.1| - 0.12 12.7 0.2 2.4 8.5 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|327311098|ref|YP_004337995.1| - 0.12 12.1 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|327311098|ref|YP_004337995.1| - 0.12 12.6 0.2 0.25 11.5 0.2 1.5 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|327311098|ref|YP_004337995.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_27 PF13514.6 gi|327311098|ref|YP_004337995.1| - 0.13 11.9 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|327311098|ref|YP_004337995.1| - 0.15 11.6 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_18 PF13238.6 gi|327311098|ref|YP_004337995.1| - 0.15 12.6 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|327311098|ref|YP_004337995.1| - 0.15 11.8 0.1 0.25 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|327311098|ref|YP_004337995.1| - 0.16 12.1 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|327311098|ref|YP_004337995.1| - 0.16 11.2 0.1 0.26 10.6 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|327311098|ref|YP_004337995.1| - 0.22 10.4 0.0 0.35 9.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF3584 PF12128.8 gi|327311098|ref|YP_004337995.1| - 0.38 8.2 0.1 0.51 7.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) IF-2B PF01008.17 gi|327311099|ref|YP_004337996.1| - 7.1e-07 28.7 0.0 4.6e-06 26.1 0.0 2.1 1 1 0 1 1 1 1 Initiation factor 2 subunit family NrfD PF03916.14 gi|327311100|ref|YP_004337997.1| - 9.1e-18 64.9 26.8 9.1e-18 64.9 26.8 1.6 2 0 0 2 2 2 1 Polysulphide reductase, NrfD DUF5423 PF17461.2 gi|327311100|ref|YP_004337997.1| - 0.19 10.6 4.0 0.11 11.3 1.8 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF5423) Fer4_11 PF13247.6 gi|327311101|ref|YP_004337998.1| - 2.2e-20 72.6 8.3 2.2e-20 72.6 8.3 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327311101|ref|YP_004337998.1| - 9.6e-16 57.1 33.7 3.8e-07 29.9 2.4 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327311101|ref|YP_004337998.1| - 2.4e-15 56.8 23.7 2.4e-08 34.5 6.7 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|327311101|ref|YP_004337998.1| - 5.2e-15 54.6 33.7 2.2e-08 33.5 2.6 4.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|327311101|ref|YP_004337998.1| - 4.4e-11 42.2 31.8 4.7e-05 23.2 1.3 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|327311101|ref|YP_004337998.1| - 9.3e-11 41.7 25.9 8.2e-05 22.6 8.6 4.1 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327311101|ref|YP_004337998.1| - 3.1e-08 33.7 29.1 0.00034 20.7 10.9 3.6 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327311101|ref|YP_004337998.1| - 6.8e-07 29.3 32.7 0.0098 16.3 2.0 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|327311101|ref|YP_004337998.1| - 3.8e-06 27.5 45.0 0.0092 16.9 4.4 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327311101|ref|YP_004337998.1| - 1.5e-05 25.8 25.2 0.22 12.5 0.6 4.2 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|327311101|ref|YP_004337998.1| - 7.4e-05 23.1 27.6 0.0018 18.7 9.2 3.6 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327311101|ref|YP_004337998.1| - 8.6e-05 23.0 25.0 0.26 11.9 5.1 3.9 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|327311101|ref|YP_004337998.1| - 0.00024 21.2 31.0 0.0049 17.0 1.3 3.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|327311101|ref|YP_004337998.1| - 0.00089 19.4 19.7 0.082 13.1 0.3 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|327311101|ref|YP_004337998.1| - 0.15 12.8 0.8 0.15 12.8 0.8 3.6 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|327311101|ref|YP_004337998.1| - 2.2 9.2 20.8 1.7 9.6 0.9 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|327311102|ref|YP_004337999.1| - 1e-50 173.0 0.0 3.2e-50 171.4 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|327311102|ref|YP_004337999.1| - 6.6e-12 45.4 0.0 1.9e-11 43.9 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|327311102|ref|YP_004337999.1| - 0.0032 17.6 0.0 0.015 15.4 0.0 2.0 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain Molybdop_Fe4S4 PF04879.16 gi|327311102|ref|YP_004337999.1| - 0.021 14.8 0.2 0.059 13.4 0.2 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain PMT_2 PF13231.6 gi|327311103|ref|YP_004338000.1| - 4.4e-07 30.2 12.9 4.4e-07 30.2 12.9 3.3 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|327311103|ref|YP_004338000.1| - 0.01 15.5 5.3 0.01 15.5 5.3 4.1 3 1 1 4 4 4 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2116 PF09889.9 gi|327311103|ref|YP_004338000.1| - 0.15 12.1 0.0 0.51 10.4 0.0 1.9 1 0 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) GT87 PF09594.10 gi|327311103|ref|YP_004338000.1| - 0.41 10.3 40.7 0.054 13.2 31.6 2.8 2 1 1 3 3 3 0 Glycosyltransferase family 87 Sugar_tr PF00083.24 gi|327311104|ref|YP_004338001.1| - 4.1e-54 184.1 13.1 5.2e-54 183.8 13.1 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|327311104|ref|YP_004338001.1| - 3.4e-27 95.3 33.9 3.4e-27 95.3 33.9 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Oxidored_q6 PF01058.22 gi|327311105|ref|YP_004338002.1| - 2.4e-25 88.9 0.1 3.3e-25 88.4 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Glyco_transf_43 PF03360.16 gi|327311105|ref|YP_004338002.1| - 0.0098 15.7 0.1 0.017 14.9 0.1 1.3 1 1 0 1 1 1 1 Glycosyltransferase family 43 Complex1_30kDa PF00329.19 gi|327311106|ref|YP_004338003.1| - 5.6e-29 101.3 0.0 7.5e-29 100.8 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NTP_transf_2 PF01909.23 gi|327311107|ref|YP_004338004.1| - 1.1e-11 44.9 0.0 1.3e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327311107|ref|YP_004338004.1| - 4.4e-07 29.9 0.0 5.3e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HTH_48 PF17906.1 gi|327311107|ref|YP_004338004.1| - 0.045 13.9 0.0 0.06 13.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain in Mos1 transposase DUF294 PF03445.13 gi|327311107|ref|YP_004338004.1| - 0.16 11.8 0.0 0.29 10.9 0.0 1.5 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HlyIII PF03006.20 gi|327311108|ref|YP_004338005.1| - 0.055 13.2 0.1 0.058 13.1 0.1 1.1 1 0 0 1 1 1 0 Haemolysin-III related DUF202 PF02656.15 gi|327311108|ref|YP_004338005.1| - 0.16 12.5 1.5 0.3 11.6 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF202) PhnA_Zn_Ribbon PF08274.12 gi|327311109|ref|YP_004338006.1| - 0.032 14.2 1.7 0.075 13.0 1.7 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon MerE PF05052.12 gi|327311109|ref|YP_004338006.1| - 0.084 12.8 0.2 0.094 12.7 0.2 1.2 1 0 0 1 1 1 0 MerE protein Rad50_zn_hook PF04423.14 gi|327311109|ref|YP_004338006.1| - 1.3 9.0 3.4 2.1 8.3 0.6 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif CbiQ PF02361.16 gi|327311110|ref|YP_004338007.1| - 3.3e-17 62.8 12.6 3.3e-17 62.8 12.6 2.4 2 1 0 2 2 2 1 Cobalt transport protein PBP PF01161.20 gi|327311111|ref|YP_004338008.1| - 1.7e-31 109.2 0.0 2.1e-31 109.0 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein ABC_tran PF00005.27 gi|327311112|ref|YP_004338009.1| - 5e-57 192.3 0.0 3.2e-29 102.2 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|327311112|ref|YP_004338009.1| - 1.7e-18 67.5 7.7 7.6e-05 22.7 0.0 4.2 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327311112|ref|YP_004338009.1| - 2.1e-16 60.0 1.6 4.6e-06 26.2 0.0 3.8 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|327311112|ref|YP_004338009.1| - 5.9e-11 41.9 0.1 0.00014 21.6 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|327311112|ref|YP_004338009.1| - 4.5e-09 36.9 0.1 0.0023 18.3 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|327311112|ref|YP_004338009.1| - 9.4e-08 32.4 2.8 0.009 16.3 0.2 3.6 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|327311112|ref|YP_004338009.1| - 3e-07 31.2 0.0 0.022 15.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|327311112|ref|YP_004338009.1| - 4.6e-07 29.7 2.5 0.024 14.4 0.0 3.4 2 2 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|327311112|ref|YP_004338009.1| - 1.2e-06 28.6 0.0 0.0027 17.6 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|327311112|ref|YP_004338009.1| - 1.8e-06 27.6 1.4 0.042 13.4 0.3 3.4 2 1 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.23 gi|327311112|ref|YP_004338009.1| - 2.1e-06 27.8 0.5 0.0028 17.7 0.1 2.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase T2SSE PF00437.20 gi|327311112|ref|YP_004338009.1| - 8.7e-06 25.0 0.1 0.044 12.8 0.1 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_15 PF13175.6 gi|327311112|ref|YP_004338009.1| - 1.7e-05 24.7 0.0 0.14 11.9 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain SbcCD_C PF13558.6 gi|327311112|ref|YP_004338009.1| - 2.5e-05 24.4 0.5 1.7 9.0 0.1 4.1 3 2 0 3 3 2 2 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|327311112|ref|YP_004338009.1| - 8.9e-05 21.8 0.3 0.14 11.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_5 PF07728.14 gi|327311112|ref|YP_004338009.1| - 9.4e-05 22.4 1.2 1.3 9.0 0.0 3.8 4 0 0 4 4 3 2 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|327311112|ref|YP_004338009.1| - 0.00014 21.5 0.1 0.02 14.4 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|327311112|ref|YP_004338009.1| - 0.00016 21.0 0.2 0.37 10.0 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.21 gi|327311112|ref|YP_004338009.1| - 0.00025 20.5 0.1 0.031 13.6 0.0 2.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|327311112|ref|YP_004338009.1| - 0.00037 20.0 2.5 2.6 7.4 0.0 3.8 4 0 0 4 4 4 1 Bacterial TniB protein AAA_33 PF13671.6 gi|327311112|ref|YP_004338009.1| - 0.00039 20.6 0.1 0.49 10.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|327311112|ref|YP_004338009.1| - 0.0006 20.2 1.1 3.6 8.0 0.0 4.0 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|327311112|ref|YP_004338009.1| - 0.00062 18.7 1.0 0.84 8.4 0.0 3.2 3 0 0 3 3 3 1 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|327311112|ref|YP_004338009.1| - 0.00063 19.5 1.6 5.1 6.8 0.0 3.9 4 0 0 4 4 4 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|327311112|ref|YP_004338009.1| - 0.00077 19.8 0.2 1.4 9.3 0.1 2.4 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.12 gi|327311112|ref|YP_004338009.1| - 0.0014 18.6 0.9 2.1 8.2 0.1 2.6 3 0 0 3 3 2 2 NACHT domain AAA_14 PF13173.6 gi|327311112|ref|YP_004338009.1| - 0.0014 18.7 0.1 0.57 10.2 0.0 3.5 4 0 0 4 4 3 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|327311112|ref|YP_004338009.1| - 0.0014 18.0 0.2 0.074 12.4 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family DEAD PF00270.29 gi|327311112|ref|YP_004338009.1| - 0.0026 17.5 0.3 3 7.6 0.2 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase ATP_bind_1 PF03029.17 gi|327311112|ref|YP_004338009.1| - 0.004 17.0 0.3 2.6 7.8 0.1 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|327311112|ref|YP_004338009.1| - 0.0055 16.4 0.8 2.6 7.7 0.1 2.8 3 0 0 3 3 2 1 AAA domain Dynamin_N PF00350.23 gi|327311112|ref|YP_004338009.1| - 0.0078 16.3 1.9 0.43 10.6 0.1 2.7 3 0 0 3 3 2 1 Dynamin family DUF87 PF01935.17 gi|327311112|ref|YP_004338009.1| - 0.0098 16.0 1.2 2.5 8.1 0.1 2.5 2 0 0 2 2 2 1 Helicase HerA, central domain Ploopntkinase3 PF18751.1 gi|327311112|ref|YP_004338009.1| - 0.015 15.2 0.1 7.8 6.4 0.1 2.5 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 G-alpha PF00503.20 gi|327311112|ref|YP_004338009.1| - 0.017 14.3 0.0 0.87 8.7 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit ATPase_2 PF01637.18 gi|327311112|ref|YP_004338009.1| - 0.017 15.0 0.8 5.5 6.8 0.0 2.9 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|327311112|ref|YP_004338009.1| - 0.018 14.7 1.5 4.4 6.9 0.1 3.0 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain DLIC PF05783.11 gi|327311112|ref|YP_004338009.1| - 0.021 13.7 0.5 4.7 5.9 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) ATPase PF06745.13 gi|327311112|ref|YP_004338009.1| - 0.023 14.0 3.1 5.8 6.2 0.0 3.4 4 0 0 4 4 3 0 KaiC cobW PF02492.19 gi|327311112|ref|YP_004338009.1| - 0.025 14.2 2.2 1.9 8.0 0.1 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Septin PF00735.18 gi|327311112|ref|YP_004338009.1| - 0.034 13.4 0.7 0.62 9.3 0.1 2.1 2 0 0 2 2 2 0 Septin PduV-EutP PF10662.9 gi|327311112|ref|YP_004338009.1| - 0.046 13.5 0.3 1.7 8.4 0.0 2.8 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AIG1 PF04548.16 gi|327311112|ref|YP_004338009.1| - 0.051 12.9 0.2 0.051 12.9 0.2 1.8 2 0 0 2 2 1 0 AIG1 family AAA_27 PF13514.6 gi|327311112|ref|YP_004338009.1| - 0.081 12.5 0.1 7.2 6.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|327311112|ref|YP_004338009.1| - 0.094 12.6 0.9 6.1 6.7 0.1 2.6 2 0 0 2 2 2 0 NTPase DUF815 PF05673.13 gi|327311112|ref|YP_004338009.1| - 0.11 11.7 0.0 1.3 8.1 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF815) PhoH PF02562.16 gi|327311112|ref|YP_004338009.1| - 0.13 11.7 0.4 15 4.9 0.0 2.8 3 0 0 3 3 3 0 PhoH-like protein APS_kinase PF01583.20 gi|327311112|ref|YP_004338009.1| - 0.15 12.0 0.7 17 5.3 0.0 2.8 3 0 0 3 3 2 0 Adenylylsulphate kinase AAA_28 PF13521.6 gi|327311112|ref|YP_004338009.1| - 0.15 12.3 2.0 13 6.0 0.1 3.5 4 0 0 4 4 4 0 AAA domain TsaE PF02367.17 gi|327311112|ref|YP_004338009.1| - 0.16 11.9 0.0 3.8 7.5 0.0 2.5 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|327311112|ref|YP_004338009.1| - 0.24 11.8 4.8 17 5.7 0.7 3.3 3 1 0 3 3 3 0 AAA domain FeoB_N PF02421.18 gi|327311112|ref|YP_004338009.1| - 0.25 10.9 3.0 3.2 7.3 0.2 2.5 3 0 0 3 3 2 0 Ferrous iron transport protein B Roc PF08477.13 gi|327311112|ref|YP_004338009.1| - 0.54 10.5 2.6 16 5.7 0.3 3.0 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|327311112|ref|YP_004338009.1| - 0.56 10.7 5.2 14 6.2 0.1 3.4 4 1 0 4 4 2 0 AAA domain DUF2705 PF10920.8 gi|327311113|ref|YP_004338010.1| - 0.025 13.9 1.5 0.044 13.1 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2705) DUF4330 PF14221.6 gi|327311113|ref|YP_004338010.1| - 0.028 14.6 0.0 0.045 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Radical_SAM PF04055.21 gi|327311114|ref|YP_004338011.1| - 2.3e-12 47.6 0.0 4.4e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|327311114|ref|YP_004338011.1| - 4.1e-05 23.9 0.0 7.2e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|327311114|ref|YP_004338011.1| - 0.00019 21.9 0.0 0.00044 20.7 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|327311114|ref|YP_004338011.1| - 0.019 15.1 0.0 0.042 14.0 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Dioxygenase_N PF04444.14 gi|327311114|ref|YP_004338011.1| - 0.21 11.5 0.0 0.49 10.3 0.0 1.6 1 0 0 1 1 1 0 Catechol dioxygenase N terminus HEPN PF05168.14 gi|327311115|ref|YP_004338012.1| - 7.9e-28 97.0 0.1 1e-27 96.6 0.1 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|327311116|ref|YP_004338013.1| - 2.1e-12 47.2 0.0 2.5e-12 46.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327311116|ref|YP_004338013.1| - 5.6e-08 32.8 0.0 6.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|327311116|ref|YP_004338013.1| - 0.0038 17.0 0.0 0.75 9.6 0.0 2.2 1 1 1 2 2 2 2 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.6 gi|327311116|ref|YP_004338013.1| - 0.004 17.3 0.0 0.0047 17.1 0.0 1.3 1 1 0 1 1 1 1 DNA polymerase beta palm Cation_efflux PF01545.21 gi|327311117|ref|YP_004338014.1| - 1.6e-18 67.2 11.7 2e-18 66.8 11.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|327311117|ref|YP_004338014.1| - 0.00021 21.4 0.1 0.00032 20.8 0.1 1.2 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF3800 PF12686.7 gi|327311118|ref|YP_004338015.1| - 2e-06 28.4 0.0 4.1e-06 27.4 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) DUF3970 PF13113.6 gi|327311118|ref|YP_004338015.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) HTH_20 PF12840.7 gi|327311119|ref|YP_004338016.1| - 0.0074 16.3 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|327311119|ref|YP_004338016.1| - 0.027 14.4 0.1 0.049 13.5 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|327311119|ref|YP_004338016.1| - 0.032 14.0 0.0 0.063 13.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|327311119|ref|YP_004338016.1| - 0.037 13.8 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MSP1_C PF07462.11 gi|327311120|ref|YP_004338017.1| - 0.077 11.7 0.0 0.077 11.7 0.0 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus Molybdopterin PF00384.22 gi|327311121|ref|YP_004338018.1| - 1.8e-42 145.9 0.0 3.7e-41 141.5 0.0 2.8 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|327311121|ref|YP_004338018.1| - 5.8e-13 48.6 0.1 1.4e-12 47.4 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|327311121|ref|YP_004338018.1| - 7.4e-11 42.1 0.0 1.7e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|327311121|ref|YP_004338018.1| - 0.005 16.6 1.3 0.021 14.7 1.3 2.1 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.6 gi|327311122|ref|YP_004338019.1| - 5.5e-25 87.4 9.7 5.5e-25 87.4 9.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327311122|ref|YP_004338019.1| - 2e-15 57.1 21.1 2.6e-07 31.1 3.1 3.9 1 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|327311122|ref|YP_004338019.1| - 2.9e-13 49.0 39.5 1.5e-07 30.9 4.8 5.5 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|327311122|ref|YP_004338019.1| - 3.1e-12 46.5 21.1 1.1e-05 25.5 8.5 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327311122|ref|YP_004338019.1| - 1e-10 41.5 27.7 9.1e-07 28.9 10.5 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327311122|ref|YP_004338019.1| - 3.2e-10 39.6 42.5 4.1e-06 26.6 4.7 5.0 5 1 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|327311122|ref|YP_004338019.1| - 1.1e-07 31.5 38.7 3.4e-05 23.7 2.2 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327311122|ref|YP_004338019.1| - 1.2e-06 28.5 29.4 6e-05 23.1 10.7 3.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|327311122|ref|YP_004338019.1| - 2e-06 28.3 40.4 0.067 14.2 2.7 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327311122|ref|YP_004338019.1| - 1.6e-05 25.7 26.0 0.46 11.5 2.2 4.8 3 1 3 6 6 6 5 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|327311122|ref|YP_004338019.1| - 2.1e-05 24.9 24.7 0.0024 18.3 4.2 3.7 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327311122|ref|YP_004338019.1| - 6.7e-05 23.1 36.0 0.0026 18.1 3.9 4.7 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|327311122|ref|YP_004338019.1| - 0.00054 20.6 19.0 0.097 13.4 0.7 3.9 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|327311122|ref|YP_004338019.1| - 0.0018 18.8 25.6 1.3 9.6 0.6 4.4 3 2 1 4 4 4 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|327311122|ref|YP_004338019.1| - 0.052 14.1 3.5 0.052 14.1 3.5 4.6 3 2 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Imm1 PF14430.6 gi|327311122|ref|YP_004338019.1| - 0.21 12.2 1.4 3 8.5 0.1 2.5 3 0 0 3 3 2 0 Immunity protein Imm1 ETF_QO PF05187.13 gi|327311122|ref|YP_004338019.1| - 3.7 7.7 9.9 2.7 8.2 2.5 3.1 3 0 0 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|327311122|ref|YP_004338019.1| - 7.1 7.5 20.8 0.35 11.8 2.2 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Ni_hydr_CYTB PF01292.20 gi|327311123|ref|YP_004338020.1| - 1.5e-17 63.8 10.7 1.7e-17 63.6 10.7 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 SUR7 PF06687.12 gi|327311123|ref|YP_004338020.1| - 0.13 11.9 3.1 1.3 8.7 0.3 2.6 2 1 1 3 3 3 0 SUR7/PalI family FdhE PF04216.12 gi|327311124|ref|YP_004338021.1| - 2.1e-06 27.8 0.2 2.6e-06 27.5 0.2 1.2 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Rubredoxin PF00301.20 gi|327311124|ref|YP_004338021.1| - 0.00012 22.0 10.5 0.027 14.5 0.4 3.4 3 0 0 3 3 3 2 Rubredoxin TF_Zn_Ribbon PF08271.12 gi|327311124|ref|YP_004338021.1| - 0.0027 17.2 3.7 8 6.1 0.1 3.5 3 0 0 3 3 3 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|327311124|ref|YP_004338021.1| - 0.0029 17.7 2.8 3.8 7.7 0.2 3.7 3 0 0 3 3 3 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|327311124|ref|YP_004338021.1| - 0.012 15.3 10.5 0.42 10.4 0.7 3.7 3 0 0 3 3 3 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|327311124|ref|YP_004338021.1| - 0.023 15.1 8.0 0.031 14.6 0.9 2.9 2 1 1 3 3 3 0 Restriction alleviation protein Lar zf-ISL3 PF14690.6 gi|327311124|ref|YP_004338021.1| - 0.028 15.1 3.0 7.3 7.4 0.0 3.3 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-TFIIB PF13453.6 gi|327311124|ref|YP_004338021.1| - 0.041 13.2 1.9 0.2 11.0 0.3 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger CpXC PF14353.6 gi|327311124|ref|YP_004338021.1| - 0.073 13.1 1.5 0.98 9.5 0.0 2.6 2 1 1 3 3 3 0 CpXC protein Zn_ribbon_SprT PF17283.2 gi|327311124|ref|YP_004338021.1| - 0.078 12.9 13.2 0.13 12.2 4.6 3.7 2 2 1 3 3 3 0 SprT-like zinc ribbon domain HalOD2 PF18547.1 gi|327311124|ref|YP_004338021.1| - 0.11 12.4 5.6 2.3 8.2 0.0 2.9 2 1 1 3 3 3 0 Halobacterial output domain 2 RNA_POL_M_15KD PF02150.16 gi|327311124|ref|YP_004338021.1| - 0.17 11.8 6.8 0.3 11.0 0.0 3.3 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|327311124|ref|YP_004338021.1| - 0.21 11.7 5.9 2.8 8.0 4.2 2.7 2 1 0 2 2 1 0 Double zinc ribbon Rubredoxin_2 PF18073.1 gi|327311124|ref|YP_004338021.1| - 0.25 11.1 22.8 0.36 10.6 0.6 3.3 3 0 0 3 3 3 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|327311124|ref|YP_004338021.1| - 0.41 10.1 11.8 2.5 7.6 1.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|327311124|ref|YP_004338021.1| - 0.46 10.5 3.7 3.1 7.9 3.6 2.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|327311124|ref|YP_004338021.1| - 1.9 8.4 13.3 2.5 8.1 1.7 3.4 3 0 0 3 3 3 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.7 gi|327311124|ref|YP_004338021.1| - 2.9 8.0 15.1 11 6.1 8.1 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain FdhD-NarQ PF02634.15 gi|327311125|ref|YP_004338022.1| - 2.5e-33 115.7 1.1 5.3e-33 114.7 1.1 1.5 1 1 0 1 1 1 1 FdhD/NarQ family DSPc PF00782.20 gi|327311126|ref|YP_004338023.1| - 2.4e-08 33.8 0.0 2.9e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|327311126|ref|YP_004338023.1| - 0.00018 21.2 0.0 0.00021 21.0 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 gi|327311126|ref|YP_004338023.1| - 0.00018 21.7 0.0 0.00026 21.2 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.12 gi|327311126|ref|YP_004338023.1| - 0.0084 15.8 0.0 0.013 15.2 0.0 1.3 1 1 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.6 gi|327311126|ref|YP_004338023.1| - 0.012 15.6 0.1 0.12 12.4 0.1 2.0 1 1 0 1 1 1 0 Tyrosine phosphatase family Diphthami_syn_2 PF01902.17 gi|327311128|ref|YP_004338025.1| - 1.1e-55 188.6 0.0 1.3e-55 188.3 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase DNA_photolyase PF00875.18 gi|327311128|ref|YP_004338025.1| - 0.006 16.6 0.5 0.042 13.9 0.2 2.2 1 1 1 2 2 2 1 DNA photolyase ETF PF01012.21 gi|327311128|ref|YP_004338025.1| - 0.017 15.0 0.1 0.033 14.1 0.0 1.5 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DAP_epimerase PF01678.19 gi|327311128|ref|YP_004338025.1| - 0.051 13.8 0.0 0.076 13.2 0.0 1.3 1 0 0 1 1 1 0 Diaminopimelate epimerase CRM1_repeat PF18777.1 gi|327311128|ref|YP_004338025.1| - 0.19 11.3 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Chromosome region maintenance or exportin repeat ABC_tran PF00005.27 gi|327311130|ref|YP_004338027.1| - 2.5e-09 37.7 0.0 3.2e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|327311130|ref|YP_004338027.1| - 0.00015 21.4 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|327311130|ref|YP_004338027.1| - 0.0018 17.8 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|327311130|ref|YP_004338027.1| - 0.0066 16.8 0.0 0.0073 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|327311130|ref|YP_004338027.1| - 0.022 14.7 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|327311130|ref|YP_004338027.1| - 0.027 14.8 0.0 0.032 14.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|327311130|ref|YP_004338027.1| - 0.058 13.1 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_21 PF13304.6 gi|327311130|ref|YP_004338027.1| - 0.11 12.2 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system APS_kinase PF01583.20 gi|327311130|ref|YP_004338027.1| - 0.15 12.0 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase NACHT PF05729.12 gi|327311130|ref|YP_004338027.1| - 0.16 11.9 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 NACHT domain TOBE PF03459.17 gi|327311131|ref|YP_004338028.1| - 0.00095 19.4 1.3 0.005 17.1 0.3 2.5 2 1 0 2 2 2 1 TOBE domain Molydop_binding PF01568.21 gi|327311131|ref|YP_004338028.1| - 0.0018 18.3 0.1 0.0029 17.6 0.1 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain NTP_transf_2 PF01909.23 gi|327311132|ref|YP_004338029.1| - 2.4e-09 37.4 0.3 5.7e-09 36.2 0.3 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327311132|ref|YP_004338029.1| - 1.6e-07 31.3 0.1 3.1e-07 30.4 0.0 1.5 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|327311132|ref|YP_004338029.1| - 0.0087 15.9 0.0 0.036 13.9 0.0 1.8 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|327311133|ref|YP_004338030.1| - 4.3e-11 43.0 0.0 5.2e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 HEPN domain Adeno_terminal PF02459.15 gi|327311133|ref|YP_004338030.1| - 0.14 10.5 0.2 0.15 10.5 0.2 1.0 1 0 0 1 1 1 0 Adenoviral DNA terminal protein PseudoU_synth_1 PF01416.20 gi|327311135|ref|YP_004338032.1| - 2.2e-16 60.2 0.0 6.9e-16 58.7 0.0 1.8 2 0 0 2 2 2 1 tRNA pseudouridine synthase Amidohydro_1 PF01979.20 gi|327311136|ref|YP_004338033.1| - 5.9e-05 22.5 0.1 0.00054 19.4 0.1 2.0 1 1 0 1 1 1 1 Amidohydrolase family Radical_SAM PF04055.21 gi|327311137|ref|YP_004338034.1| - 0.0053 17.1 0.0 0.038 14.4 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily SinI PF08671.10 gi|327311138|ref|YP_004338035.1| - 0.0018 18.0 2.5 0.07 12.9 1.3 2.4 2 0 0 2 2 2 2 Anti-repressor SinI HIT PF01230.23 gi|327311139|ref|YP_004338036.1| - 8.5e-23 80.9 0.0 1.3e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|327311139|ref|YP_004338036.1| - 8.3e-13 48.8 0.0 1.2e-12 48.3 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding MaoC_dehydratas PF01575.19 gi|327311140|ref|YP_004338037.1| - 8.6e-31 106.1 0.0 1.1e-30 105.7 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|327311140|ref|YP_004338037.1| - 3.1e-08 33.8 0.1 5e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|327311140|ref|YP_004338037.1| - 6.9e-05 23.1 0.0 0.00019 21.7 0.0 1.9 1 1 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|327311140|ref|YP_004338037.1| - 0.0057 17.1 0.0 0.0065 16.9 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily TP_methylase PF00590.20 gi|327311141|ref|YP_004338038.1| - 5.6e-29 101.6 0.4 6.9e-29 101.3 0.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GTP_EFTU_D4 PF14578.6 gi|327311143|ref|YP_004338040.1| - 1.6e-34 117.6 3.0 1.6e-34 117.6 3.0 3.1 3 0 0 3 3 3 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|327311143|ref|YP_004338040.1| - 1.7e-26 93.0 0.0 6.4e-26 91.1 0.0 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|327311143|ref|YP_004338040.1| - 5.5e-17 61.8 0.0 1.1e-16 60.8 0.0 1.5 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|327311143|ref|YP_004338040.1| - 4.7e-15 55.7 10.5 2.8e-09 37.2 1.6 2.7 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|327311143|ref|YP_004338040.1| - 7.6e-05 22.8 0.0 0.00016 21.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|327311143|ref|YP_004338040.1| - 0.088 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain FlgO PF17680.1 gi|327311143|ref|YP_004338040.1| - 0.17 11.6 0.2 0.45 10.2 0.0 1.7 2 0 0 2 2 2 0 FlgO protein Ribosomal_S6e PF01092.19 gi|327311145|ref|YP_004338042.1| - 3.1e-29 101.5 0.0 4e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e AsnC_trans_reg PF01037.21 gi|327311146|ref|YP_004338043.1| - 3.6e-15 55.7 0.1 4.2e-15 55.5 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HMA PF00403.26 gi|327311146|ref|YP_004338043.1| - 0.09 13.2 0.1 0.14 12.6 0.1 1.3 1 0 0 1 1 1 0 Heavy-metal-associated domain UbiA PF01040.18 gi|327311147|ref|YP_004338044.1| - 1.1e-44 152.7 26.8 1.3e-44 152.4 26.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family adh_short_C2 PF13561.6 gi|327311150|ref|YP_004338047.1| - 5.5e-54 183.2 3.5 6.1e-54 183.0 3.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|327311150|ref|YP_004338047.1| - 3e-51 173.7 2.2 3.9e-51 173.3 2.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|327311150|ref|YP_004338047.1| - 4.4e-08 33.3 0.7 6.1e-08 32.8 0.7 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|327311150|ref|YP_004338047.1| - 0.00021 20.8 1.1 0.00082 18.9 0.6 2.1 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family YjeF_N PF03853.15 gi|327311150|ref|YP_004338047.1| - 0.042 13.7 0.6 0.1 12.5 0.6 1.7 1 0 0 1 1 1 0 YjeF-related protein N-terminus DUF521 PF04412.13 gi|327311150|ref|YP_004338047.1| - 0.08 11.6 0.1 0.092 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) 2-Hacid_dh_C PF02826.19 gi|327311150|ref|YP_004338047.1| - 0.083 12.3 0.3 0.81 9.0 0.2 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4533 PF15047.6 gi|327311150|ref|YP_004338047.1| - 0.18 11.4 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4533) Nif11 PF07862.11 gi|327311151|ref|YP_004338048.1| - 0.057 13.7 0.6 0.62 10.4 0.1 2.4 2 1 0 2 2 2 0 Nif11 domain DUF402 PF04167.13 gi|327311152|ref|YP_004338049.1| - 2.7e-09 37.1 0.0 4.8e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) SurE PF01975.17 gi|327311153|ref|YP_004338050.1| - 7.7e-37 127.0 0.0 1e-36 126.6 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Glyco_transf_4 PF13439.6 gi|327311153|ref|YP_004338050.1| - 0.073 13.1 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.26 gi|327311153|ref|YP_004338050.1| - 0.095 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 MFS_1 PF07690.16 gi|327311154|ref|YP_004338051.1| - 1.8e-30 106.1 62.9 4.5e-23 81.7 37.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|327311154|ref|YP_004338051.1| - 3.8e-07 29.3 14.2 6e-06 25.4 1.6 2.1 2 0 0 2 2 2 2 MFS_1 like family Imm17 PF15562.6 gi|327311154|ref|YP_004338051.1| - 0.025 14.5 2.1 0.035 14.0 0.0 2.5 2 0 0 2 2 2 0 Immunity protein 17 Nitroreductase PF00881.24 gi|327311155|ref|YP_004338052.1| - 8.8e-34 117.0 0.0 1.1e-33 116.7 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|327311155|ref|YP_004338052.1| - 1.2e-06 28.3 0.0 0.0022 17.6 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase PsbN PF02468.15 gi|327311156|ref|YP_004338053.1| - 2.5 8.0 10.6 1.2 9.0 1.7 2.9 3 0 0 3 3 3 0 Photosystem II reaction centre N protein (psbN) DUF2070 PF09843.9 gi|327311158|ref|YP_004338055.1| - 1.9 6.7 12.3 2.2 6.5 12.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF1700 PF08006.11 gi|327311158|ref|YP_004338055.1| - 5 6.6 9.7 7.3 6.1 9.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) OsmC PF02566.19 gi|327311159|ref|YP_004338056.1| - 0.0024 18.3 0.4 2.1 8.9 0.1 2.1 1 1 1 2 2 2 2 OsmC-like protein CstA PF02554.14 gi|327311161|ref|YP_004338058.1| - 5.7e-86 288.8 28.8 5.7e-86 288.8 28.8 2.6 1 1 1 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|327311161|ref|YP_004338058.1| - 2.2e-19 69.9 9.2 2.2e-19 69.9 9.2 3.5 4 1 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA DUF3981 PF13139.6 gi|327311161|ref|YP_004338058.1| - 0.004 17.5 4.1 0.004 17.5 4.1 2.7 2 0 0 2 2 2 1 Domain of unknown function (DUF3981) ArsA_ATPase PF02374.15 gi|327311163|ref|YP_004338060.1| - 2.8e-70 236.9 0.1 3.2e-70 236.7 0.1 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|327311163|ref|YP_004338060.1| - 1.4e-13 51.0 0.0 5.4e-13 49.1 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|327311163|ref|YP_004338060.1| - 3.7e-12 46.5 0.0 8e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|327311163|ref|YP_004338060.1| - 1.1e-10 41.5 3.8 0.0001 21.9 0.0 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|327311163|ref|YP_004338060.1| - 0.0009 18.8 1.3 0.0031 17.0 0.0 2.6 4 0 0 4 4 4 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family XPB_DRD PF18458.1 gi|327311163|ref|YP_004338060.1| - 0.0015 18.3 0.2 0.0057 16.5 0.1 1.9 2 0 0 2 2 2 1 Xeroderma pigmentosum group B helicase damage recognition domain Thioredoxin_7 PF13899.6 gi|327311163|ref|YP_004338060.1| - 0.0045 17.1 0.0 0.01 16.0 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like DnaB_C PF03796.15 gi|327311163|ref|YP_004338060.1| - 0.024 14.0 0.0 0.33 10.2 0.0 2.0 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain AAA_26 PF13500.6 gi|327311163|ref|YP_004338060.1| - 0.039 13.8 1.0 0.048 13.5 0.0 1.5 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|327311163|ref|YP_004338060.1| - 0.063 12.7 3.8 7 6.0 3.0 3.5 2 1 0 2 2 2 0 PhoH-like protein NB-ARC PF00931.22 gi|327311163|ref|YP_004338060.1| - 0.07 12.3 0.1 0.28 10.4 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain YjeF_N PF03853.15 gi|327311163|ref|YP_004338060.1| - 0.076 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus VirC1 PF07015.11 gi|327311163|ref|YP_004338060.1| - 0.082 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein AAA_25 PF13481.6 gi|327311163|ref|YP_004338060.1| - 0.084 12.4 0.4 0.5 9.9 0.4 2.2 1 1 0 1 1 1 0 AAA domain MDM1 PF15501.6 gi|327311163|ref|YP_004338060.1| - 0.18 10.9 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 Nuclear protein MDM1 ArsA_ATPase PF02374.15 gi|327311164|ref|YP_004338061.1| - 2.9e-57 194.2 0.0 3.3e-57 194.0 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|327311164|ref|YP_004338061.1| - 1e-11 44.8 0.1 2.2e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|327311164|ref|YP_004338061.1| - 2.8e-09 37.1 0.0 5.1e-09 36.3 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|327311164|ref|YP_004338061.1| - 3.7e-05 23.7 0.0 7.5e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|327311164|ref|YP_004338061.1| - 0.019 14.4 0.0 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|327311164|ref|YP_004338061.1| - 0.026 14.4 0.1 4.4 7.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|327311164|ref|YP_004338061.1| - 0.046 13.2 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Fur_reg_FbpB PF13040.6 gi|327311165|ref|YP_004338062.1| - 0.0089 15.6 0.6 0.015 14.9 0.6 1.3 1 0 0 1 1 1 1 Fur-regulated basic protein B Methyltransf_23 PF13489.6 gi|327311167|ref|YP_004338064.1| - 5.1e-06 26.4 0.0 7.5e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327311167|ref|YP_004338064.1| - 0.054 14.1 0.0 0.13 12.9 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Ribosomal_L9_N PF01281.19 gi|327311167|ref|YP_004338064.1| - 0.089 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 Ribosomal protein L9, N-terminal domain F-box-like PF12937.7 gi|327311167|ref|YP_004338064.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 F-box-like Thioredoxin_3 PF13192.6 gi|327311168|ref|YP_004338065.1| - 0.002 18.2 0.0 0.13 12.3 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin domain Radical_SAM PF04055.21 gi|327311169|ref|YP_004338066.1| - 3.1e-26 92.7 0.0 5.8e-26 91.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|327311169|ref|YP_004338066.1| - 4.4e-09 36.7 0.2 9.4e-09 35.7 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|327311169|ref|YP_004338066.1| - 7.9e-07 29.4 0.0 1.6e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|327311169|ref|YP_004338066.1| - 9.3e-06 25.2 0.0 0.0028 17.1 0.0 2.6 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Fer4_14 PF13394.6 gi|327311169|ref|YP_004338066.1| - 1.6e-05 25.0 0.0 3e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Glyco_hydro_97 PF10566.9 gi|327311169|ref|YP_004338066.1| - 0.0031 16.8 0.0 1.7 7.9 0.0 2.2 1 1 1 2 2 2 2 Glycoside hydrolase 97 MFS_1 PF07690.16 gi|327311170|ref|YP_004338067.1| - 5.8e-08 32.0 56.8 5.8e-08 32.0 56.8 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_M20 PF01546.28 gi|327311171|ref|YP_004338068.1| - 1.8e-23 83.4 0.2 2.4e-23 82.9 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|327311171|ref|YP_004338068.1| - 8.2e-11 41.8 0.0 1.5e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|327311171|ref|YP_004338068.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 DUF3209 PF11483.8 gi|327311171|ref|YP_004338068.1| - 0.17 12.3 0.0 0.46 11.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3209) AAA_21 PF13304.6 gi|327311172|ref|YP_004338069.1| - 7.5e-18 65.4 0.0 5.7e-09 36.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|327311172|ref|YP_004338069.1| - 6.2e-15 55.8 0.0 1.1e-09 38.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|327311172|ref|YP_004338069.1| - 1.7e-07 31.9 0.0 2.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.8 gi|327311172|ref|YP_004338069.1| - 0.00015 21.1 0.3 0.0017 17.7 0.0 2.2 2 1 1 3 3 3 1 Protein of unknown function (DUF2813) SMC_N PF02463.19 gi|327311172|ref|YP_004338069.1| - 0.00025 20.6 0.0 0.00048 19.6 0.0 1.4 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|327311172|ref|YP_004338069.1| - 0.00047 19.8 0.0 0.0012 18.5 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|327311172|ref|YP_004338069.1| - 0.0012 19.4 0.0 0.0026 18.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_30 PF13604.6 gi|327311172|ref|YP_004338069.1| - 0.006 16.3 0.0 2.2 8.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_27 PF13514.6 gi|327311172|ref|YP_004338069.1| - 0.011 15.4 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|327311172|ref|YP_004338069.1| - 0.015 15.7 0.0 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|327311172|ref|YP_004338069.1| - 0.02 14.9 0.0 3.4 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|327311172|ref|YP_004338069.1| - 0.032 14.3 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 Dynamin family NACHT PF05729.12 gi|327311172|ref|YP_004338069.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|327311172|ref|YP_004338069.1| - 0.19 12.0 0.0 0.6 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain NitrOD5 PF11537.8 gi|327311174|ref|YP_004338071.1| - 0.0024 18.0 0.0 0.0029 17.7 0.0 1.1 1 0 0 1 1 1 1 Nitrosopumilus output domain 5 Semialdhyde_dh PF01118.24 gi|327311176|ref|YP_004338073.1| - 8.4e-32 110.2 0.0 1.3e-31 109.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|327311176|ref|YP_004338073.1| - 3.2e-12 46.9 0.0 5.9e-12 46.0 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|327311176|ref|YP_004338073.1| - 0.028 13.9 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|327311176|ref|YP_004338073.1| - 0.051 14.2 0.0 0.12 12.9 0.0 1.7 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|327311176|ref|YP_004338073.1| - 0.1 12.8 0.1 0.23 11.7 0.1 1.7 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain AA_kinase PF00696.28 gi|327311177|ref|YP_004338074.1| - 5.9e-36 124.3 0.7 7.1e-36 124.0 0.7 1.1 1 0 0 1 1 1 1 Amino acid kinase family ATPase_2 PF01637.18 gi|327311178|ref|YP_004338075.1| - 5.7e-38 131.1 0.0 8.1e-38 130.6 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|327311178|ref|YP_004338075.1| - 4.6e-07 30.4 0.6 1.2e-06 29.0 0.1 2.0 2 2 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|327311178|ref|YP_004338075.1| - 0.0012 19.4 0.0 0.0023 18.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327311178|ref|YP_004338075.1| - 0.0026 18.0 0.0 0.0048 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|327311178|ref|YP_004338075.1| - 0.0029 17.9 0.0 0.0054 17.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|327311178|ref|YP_004338075.1| - 0.0073 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) T3SS_basalb_I PF17001.5 gi|327311178|ref|YP_004338075.1| - 0.0092 16.6 0.0 0.019 15.5 0.0 1.5 1 0 0 1 1 1 1 Type III secretion basal body protein I, YscI, HrpB, PscI Sigma54_activ_2 PF14532.6 gi|327311178|ref|YP_004338075.1| - 0.01 16.0 0.0 0.098 12.8 0.0 2.3 1 1 1 2 2 2 0 Sigma-54 interaction domain AAA PF00004.29 gi|327311178|ref|YP_004338075.1| - 0.012 16.0 0.0 0.021 15.2 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|327311178|ref|YP_004338075.1| - 0.014 15.8 0.0 0.025 15.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|327311178|ref|YP_004338075.1| - 0.022 14.7 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|327311178|ref|YP_004338075.1| - 0.036 13.2 0.0 0.26 10.5 0.0 2.1 2 1 0 2 2 2 0 NB-ARC domain Rad17 PF03215.15 gi|327311178|ref|YP_004338075.1| - 0.038 13.9 0.0 0.064 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Adeno_IVa2 PF02456.15 gi|327311178|ref|YP_004338075.1| - 0.042 12.7 0.0 0.07 11.9 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_14 PF13173.6 gi|327311178|ref|YP_004338075.1| - 0.042 13.9 0.0 0.089 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|327311178|ref|YP_004338075.1| - 0.055 14.0 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|327311178|ref|YP_004338075.1| - 0.089 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|327311178|ref|YP_004338075.1| - 0.19 12.2 0.0 0.29 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain HypA PF01155.19 gi|327311179|ref|YP_004338076.1| - 2.2e-06 27.6 0.3 2.3e-06 27.6 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|327311179|ref|YP_004338076.1| - 1e-05 25.5 0.4 1.4e-05 25.1 0.4 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|327311179|ref|YP_004338076.1| - 5.2e-05 23.1 1.5 0.0026 17.6 1.6 2.2 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|327311179|ref|YP_004338076.1| - 0.00011 21.6 3.3 0.00032 20.1 3.5 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|327311179|ref|YP_004338076.1| - 0.00012 21.7 0.8 0.17 11.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-CHCC PF10276.9 gi|327311179|ref|YP_004338076.1| - 0.00059 19.8 0.4 0.81 9.8 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger domain Prok-RING_1 PF14446.6 gi|327311179|ref|YP_004338076.1| - 0.00061 19.7 3.0 0.0014 18.5 3.0 1.6 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-CSL PF05207.13 gi|327311179|ref|YP_004338076.1| - 0.0018 17.9 1.1 0.0019 17.9 0.3 1.5 2 0 0 2 2 2 1 CSL zinc finger UPF0547 PF10571.9 gi|327311179|ref|YP_004338076.1| - 0.0047 17.0 1.1 3 8.0 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.13 gi|327311179|ref|YP_004338076.1| - 0.011 15.4 0.6 3.9 7.2 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-HYPF PF07503.12 gi|327311179|ref|YP_004338076.1| - 0.014 15.2 0.8 1.1 9.1 0.1 2.1 2 0 0 2 2 2 0 HypF finger zf-UDP PF14569.6 gi|327311179|ref|YP_004338076.1| - 0.021 14.9 0.9 0.17 12.0 0.9 1.9 1 1 0 1 1 1 0 Zinc-binding RING-finger PhnA_Zn_Ribbon PF08274.12 gi|327311179|ref|YP_004338076.1| - 0.028 14.3 0.8 0.046 13.7 0.8 1.3 1 0 0 1 1 1 0 PhnA Zinc-Ribbon DZR PF12773.7 gi|327311179|ref|YP_004338076.1| - 0.031 14.3 0.7 0.054 13.5 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|327311179|ref|YP_004338076.1| - 0.035 14.5 0.9 3.2 8.2 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-Sec23_Sec24 PF04810.15 gi|327311179|ref|YP_004338076.1| - 0.039 14.0 0.0 2.2 8.4 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn_ribbon_SprT PF17283.2 gi|327311179|ref|YP_004338076.1| - 0.04 13.8 1.7 0.38 10.7 0.2 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-C2H2_3 PF13878.6 gi|327311179|ref|YP_004338076.1| - 0.044 13.6 3.7 2.5 8.0 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF1451 PF07295.11 gi|327311179|ref|YP_004338076.1| - 0.044 13.8 0.3 0.054 13.5 0.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Elf1 PF05129.13 gi|327311179|ref|YP_004338076.1| - 0.055 13.5 0.9 1.1 9.3 0.1 2.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DUF3797 PF12677.7 gi|327311179|ref|YP_004338076.1| - 0.058 13.3 1.1 0.46 10.4 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-NADH-PPase PF09297.11 gi|327311179|ref|YP_004338076.1| - 0.076 12.7 0.9 5 6.9 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|327311179|ref|YP_004338076.1| - 0.097 13.1 1.0 2.1 8.8 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-tcix PF14952.6 gi|327311179|ref|YP_004338076.1| - 0.1 12.3 1.8 2.4 7.8 0.4 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Mu-like_Com PF10122.9 gi|327311179|ref|YP_004338076.1| - 0.13 11.8 1.7 1.2 8.6 0.1 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF983 PF06170.12 gi|327311179|ref|YP_004338076.1| - 0.13 12.7 1.3 3.4 8.2 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-C2H2 PF00096.26 gi|327311179|ref|YP_004338076.1| - 0.13 12.8 1.1 8.6 7.0 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Cys_rich_CPXG PF14255.6 gi|327311179|ref|YP_004338076.1| - 0.13 12.2 2.2 5.5 7.0 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-C2H2_4 PF13894.6 gi|327311179|ref|YP_004338076.1| - 0.14 13.1 0.7 5.3 8.2 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.6 gi|327311179|ref|YP_004338076.1| - 0.3 11.1 1.9 7.7 6.6 2.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-HIT PF04438.16 gi|327311179|ref|YP_004338076.1| - 1.7 8.6 6.9 3.2 7.7 1.4 2.1 2 0 0 2 2 2 0 HIT zinc finger Arginosuc_synth PF00764.19 gi|327311180|ref|YP_004338077.1| - 4.7e-120 401.4 0.0 5.8e-120 401.1 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase CbiX PF01903.17 gi|327311181|ref|YP_004338078.1| - 0.027 14.8 0.0 0.44 10.9 0.0 2.6 2 1 1 3 3 3 0 CbiX Iso_dh PF00180.20 gi|327311183|ref|YP_004338080.1| - 8.7e-93 311.2 0.5 1e-92 311.0 0.5 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|327311183|ref|YP_004338080.1| - 0.055 12.9 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA H2O2_YaaD PF03883.14 gi|327311184|ref|YP_004338081.1| - 0.0081 15.7 0.0 0.0093 15.5 0.0 1.2 1 0 0 1 1 1 1 Peroxide stress protein YaaA TPR_7 PF13176.6 gi|327311184|ref|YP_004338081.1| - 0.015 15.3 0.2 1.1 9.5 0.0 2.8 2 1 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|327311184|ref|YP_004338081.1| - 0.058 13.5 1.3 3.6 7.9 0.1 3.1 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|327311184|ref|YP_004338081.1| - 0.15 12.9 4.5 25 6.0 0.3 3.9 3 1 0 3 3 3 0 Tetratricopeptide repeat HMGL-like PF00682.19 gi|327311185|ref|YP_004338082.1| - 6.2e-59 199.7 1.7 6.2e-59 199.7 1.7 2.0 2 1 0 2 2 2 1 HMGL-like AsnC_trans_reg PF01037.21 gi|327311185|ref|YP_004338082.1| - 6.2e-13 48.5 0.3 2.2e-12 46.8 0.3 2.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain ACT_4 PF13291.6 gi|327311185|ref|YP_004338082.1| - 0.0077 16.8 0.5 0.069 13.8 0.2 2.5 1 1 1 2 2 2 1 ACT domain ComA PF02679.15 gi|327311185|ref|YP_004338082.1| - 0.019 14.4 0.0 0.037 13.5 0.0 1.6 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) Aldolase_II PF00596.21 gi|327311185|ref|YP_004338082.1| - 0.019 14.9 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain CinA_KH PF18146.1 gi|327311185|ref|YP_004338082.1| - 0.063 13.5 2.7 2.7 8.2 0.0 3.7 3 1 1 4 4 4 0 Damage-inducible protein CinA KH domain TRAPP PF04051.16 gi|327311185|ref|YP_004338082.1| - 0.13 11.9 0.1 0.28 10.9 0.1 1.5 1 0 0 1 1 1 0 Transport protein particle (TRAPP) component NapD PF03927.13 gi|327311185|ref|YP_004338082.1| - 0.37 10.9 2.2 0.78 9.8 0.9 2.3 2 0 0 2 2 2 0 NapD protein AlkA_N PF06029.11 gi|327311185|ref|YP_004338082.1| - 0.61 10.4 2.6 4.1 7.7 0.1 2.8 2 1 0 3 3 3 0 AlkA N-terminal domain Aconitase_C PF00694.19 gi|327311186|ref|YP_004338083.1| - 9.9e-17 61.5 0.0 1.2e-16 61.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|327311186|ref|YP_004338083.1| - 0.0029 17.2 0.1 0.069 12.8 0.0 2.1 1 1 1 2 2 2 2 Aconitate hydratase 2 N-terminus TPP_enzyme_N PF02776.18 gi|327311187|ref|YP_004338084.1| - 5.6e-50 169.3 0.5 3.5e-49 166.7 0.2 2.5 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|327311187|ref|YP_004338084.1| - 2.4e-46 156.9 0.1 1.2e-45 154.6 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|327311187|ref|YP_004338084.1| - 1.5e-43 148.3 0.1 8.4e-42 142.5 0.0 3.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FAD_binding_4 PF01565.23 gi|327311187|ref|YP_004338084.1| - 0.0041 16.8 0.1 2 8.2 0.0 2.7 2 0 0 2 2 2 2 FAD binding domain POR_N PF01855.19 gi|327311187|ref|YP_004338084.1| - 0.027 14.2 2.1 0.069 12.9 2.1 1.6 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CO_dh PF02552.16 gi|327311187|ref|YP_004338084.1| - 0.19 11.5 0.1 0.39 10.5 0.1 1.4 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ACT_5 PF13710.6 gi|327311188|ref|YP_004338085.1| - 4e-11 42.6 0.1 4.6e-11 42.4 0.1 1.1 1 0 0 1 1 1 1 ACT domain IlvN PF07991.12 gi|327311189|ref|YP_004338086.1| - 1.6e-74 249.0 0.1 3e-74 248.1 0.1 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|327311189|ref|YP_004338086.1| - 1.3e-53 181.2 0.1 1.9e-53 180.6 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|327311189|ref|YP_004338086.1| - 1.5e-07 31.0 0.0 2.9e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|327311189|ref|YP_004338086.1| - 3.1e-06 27.7 0.0 8.4e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|327311189|ref|YP_004338086.1| - 7.7e-06 26.2 0.0 1.5e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|327311189|ref|YP_004338086.1| - 2.5e-05 24.4 0.0 4.6e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|327311189|ref|YP_004338086.1| - 0.0019 17.8 0.1 0.0067 16.1 0.1 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Aminotran_4 PF01063.19 gi|327311190|ref|YP_004338087.1| - 1.9e-53 181.6 0.0 2.2e-53 181.4 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV PGM_PMM_I PF02878.16 gi|327311190|ref|YP_004338087.1| - 0.022 14.4 0.0 0.29 10.8 0.0 2.2 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IncD PF17628.2 gi|327311191|ref|YP_004338088.1| - 0.2 11.4 4.9 0.23 11.2 4.9 1.1 1 0 0 1 1 1 0 Inclusion membrane protein D Glyco_hydro_12 PF01670.16 gi|327311192|ref|YP_004338089.1| - 1.7e-33 116.4 0.4 2.2e-33 116.1 0.4 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 DUF756 PF05506.12 gi|327311192|ref|YP_004338089.1| - 0.13 13.2 0.0 31 5.6 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF756) Glyco_hydro_25 PF01183.20 gi|327311192|ref|YP_004338089.1| - 0.27 11.4 1.9 0.27 11.4 0.3 1.8 2 0 0 2 2 2 0 Glycosyl hydrolases family 25 Glyco_hydro_1 PF00232.18 gi|327311193|ref|YP_004338090.1| - 1.5e-70 237.9 6.6 5e-61 206.5 1.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|327311193|ref|YP_004338090.1| - 0.00022 20.8 0.0 0.00053 19.5 0.0 1.6 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) VirC1 PF07015.11 gi|327311193|ref|YP_004338090.1| - 0.12 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein SBP_bac_5 PF00496.22 gi|327311194|ref|YP_004338091.1| - 4.1e-40 137.9 8.2 4.1e-40 137.9 8.2 1.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|327311195|ref|YP_004338092.1| - 3.5e-35 121.4 14.2 3.5e-35 121.4 14.2 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|327311196|ref|YP_004338093.1| - 5.7e-17 62.0 21.7 5.7e-17 62.0 21.7 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|327311196|ref|YP_004338093.1| - 0.00038 20.4 0.2 0.00038 20.4 0.2 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C TetR_N PF00440.23 gi|327311196|ref|YP_004338093.1| - 0.074 12.9 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family ABC_tran PF00005.27 gi|327311197|ref|YP_004338094.1| - 1.7e-20 74.0 0.0 2.2e-20 73.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|327311197|ref|YP_004338094.1| - 3.2e-19 69.2 0.1 5.1e-19 68.6 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|327311197|ref|YP_004338094.1| - 2.4e-05 24.3 0.8 0.027 14.3 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|327311197|ref|YP_004338094.1| - 0.00059 19.5 0.0 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|327311197|ref|YP_004338094.1| - 0.011 16.0 0.7 0.25 11.6 0.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|327311197|ref|YP_004338094.1| - 0.11 12.8 0.0 0.17 12.2 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 gi|327311197|ref|YP_004338094.1| - 0.12 12.5 0.2 0.26 11.3 0.2 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_13 PF13166.6 gi|327311197|ref|YP_004338094.1| - 0.38 9.3 0.1 2.8 6.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|327311198|ref|YP_004338095.1| - 9e-32 110.5 0.0 1.2e-31 110.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|327311198|ref|YP_004338095.1| - 3.4e-18 65.9 0.0 6.4e-18 65.0 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|327311198|ref|YP_004338095.1| - 8.3e-06 26.1 0.1 3.7e-05 24.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327311198|ref|YP_004338095.1| - 3.8e-05 24.1 0.0 5.6e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|327311198|ref|YP_004338095.1| - 5.1e-05 23.2 1.7 0.034 14.0 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|327311198|ref|YP_004338095.1| - 0.00022 20.9 0.0 0.00043 20.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.14 gi|327311198|ref|YP_004338095.1| - 0.0022 17.9 0.1 0.0049 16.8 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.6 gi|327311198|ref|YP_004338095.1| - 0.0038 17.8 0.0 0.0052 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Avl9 PF09794.9 gi|327311198|ref|YP_004338095.1| - 0.0038 16.0 0.0 0.055 12.1 0.0 2.0 1 1 0 2 2 2 1 Transport protein Avl9 RsgA_GTPase PF03193.16 gi|327311198|ref|YP_004338095.1| - 0.0075 16.2 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 gi|327311198|ref|YP_004338095.1| - 0.012 15.6 0.0 0.027 14.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|327311198|ref|YP_004338095.1| - 0.037 14.0 0.1 0.19 11.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Pox_A32 PF04665.12 gi|327311198|ref|YP_004338095.1| - 0.043 13.3 0.1 0.086 12.3 0.1 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein NB-ARC PF00931.22 gi|327311198|ref|YP_004338095.1| - 0.045 12.9 0.0 0.092 11.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.6 gi|327311198|ref|YP_004338095.1| - 0.051 13.3 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|327311198|ref|YP_004338095.1| - 0.056 13.6 0.0 0.086 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|327311198|ref|YP_004338095.1| - 0.057 12.8 0.1 3 7.1 0.0 2.1 2 0 0 2 2 2 0 KaiC TsaE PF02367.17 gi|327311198|ref|YP_004338095.1| - 0.06 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|327311198|ref|YP_004338095.1| - 0.076 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|327311198|ref|YP_004338095.1| - 0.084 12.8 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain cobW PF02492.19 gi|327311198|ref|YP_004338095.1| - 0.087 12.4 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|327311198|ref|YP_004338095.1| - 0.13 11.8 0.2 4.9 6.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|327311198|ref|YP_004338095.1| - 0.14 12.6 0.0 0.76 10.2 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|327311198|ref|YP_004338095.1| - 0.16 12.5 0.0 0.29 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|327311198|ref|YP_004338095.1| - 0.17 10.9 0.1 0.27 10.3 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF87 PF01935.17 gi|327311198|ref|YP_004338095.1| - 0.19 11.8 0.1 0.37 10.8 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|327311198|ref|YP_004338095.1| - 0.19 11.0 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family EspG PF06872.11 gi|327311198|ref|YP_004338095.1| - 0.24 9.9 0.0 0.34 9.4 0.0 1.2 1 0 0 1 1 1 0 EspG protein dNK PF01712.19 gi|327311198|ref|YP_004338095.1| - 0.28 11.0 0.4 0.89 9.4 0.2 1.8 1 1 1 2 2 2 0 Deoxynucleoside kinase adh_short_C2 PF13561.6 gi|327311201|ref|YP_004338098.1| - 2.2e-37 128.8 0.1 5.6e-37 127.5 0.1 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|327311201|ref|YP_004338098.1| - 1.6e-22 79.9 0.2 6.6e-22 77.9 0.2 1.8 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|327311201|ref|YP_004338098.1| - 1.5e-06 27.9 0.2 8.8e-06 25.3 0.2 2.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|327311201|ref|YP_004338098.1| - 7.4e-05 22.7 0.5 0.0042 17.0 0.5 2.1 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|327311201|ref|YP_004338098.1| - 0.00048 20.1 0.1 0.00081 19.3 0.1 1.4 1 1 0 1 1 1 1 NAD(P)H-binding LDcluster4 PF18306.1 gi|327311201|ref|YP_004338098.1| - 0.0015 18.1 0.2 0.039 13.6 0.0 2.2 2 0 0 2 2 2 1 SLOG cluster4 family RmlD_sub_bind PF04321.17 gi|327311201|ref|YP_004338098.1| - 0.0025 17.0 0.0 0.0043 16.2 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|327311201|ref|YP_004338098.1| - 0.024 14.1 0.0 0.099 12.0 0.0 2.0 2 1 0 2 2 2 0 GDP-mannose 4,6 dehydratase DapB_N PF01113.20 gi|327311201|ref|YP_004338098.1| - 0.026 14.7 0.1 0.043 13.9 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GTP_cyclohydroI PF01227.22 gi|327311202|ref|YP_004338099.1| - 2.4e-47 160.7 0.0 2.9e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I HMGL-like PF00682.19 gi|327311203|ref|YP_004338100.1| - 7.1e-88 294.6 3.5 9.1e-88 294.2 3.5 1.1 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|327311203|ref|YP_004338100.1| - 0.0072 15.8 1.9 0.019 14.4 1.5 2.0 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Pro_dh PF01619.18 gi|327311203|ref|YP_004338100.1| - 0.014 14.9 0.4 0.026 14.0 0.2 1.5 2 0 0 2 2 2 0 Proline dehydrogenase AIRS_C PF02769.22 gi|327311203|ref|YP_004338100.1| - 0.051 13.7 0.1 8.1 6.6 0.0 2.4 2 0 0 2 2 2 0 AIR synthase related protein, C-terminal domain PTE PF02126.18 gi|327311203|ref|YP_004338100.1| - 0.076 12.4 0.1 6.5 6.1 0.0 2.2 1 1 1 2 2 2 0 Phosphotriesterase family Glyco_hydro_97 PF10566.9 gi|327311203|ref|YP_004338100.1| - 0.12 11.7 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Glycoside hydrolase 97 PGM_PMM_II PF02879.16 gi|327311203|ref|YP_004338100.1| - 0.12 13.0 1.2 1.8 9.2 0.7 2.8 3 0 0 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Cyclase PF04199.13 gi|327311204|ref|YP_004338101.1| - 1.7e-32 112.5 0.0 2.4e-32 112.0 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase ATPase_2 PF01637.18 gi|327311205|ref|YP_004338102.1| - 4.4e-07 30.1 0.0 1.2e-06 28.7 0.0 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|327311205|ref|YP_004338102.1| - 8.4e-07 29.1 0.0 0.036 14.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|327311205|ref|YP_004338102.1| - 0.0009 19.5 0.1 0.092 13.0 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|327311205|ref|YP_004338102.1| - 0.00092 19.6 0.7 0.0027 18.1 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain DUF4423 PF14394.6 gi|327311205|ref|YP_004338102.1| - 0.043 13.5 0.0 0.071 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Aconitase PF00330.20 gi|327311206|ref|YP_004338103.1| - 2.4e-76 257.6 3.4 6.4e-74 249.6 3.4 2.7 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|327311206|ref|YP_004338103.1| - 0.00048 19.0 0.0 0.00068 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Trp_oprn_chp PF09534.10 gi|327311207|ref|YP_004338104.1| - 0.97 9.2 5.7 2.7 7.7 5.5 1.7 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) CoA_transf_3 PF02515.17 gi|327311208|ref|YP_004338105.1| - 5.2e-96 322.0 0.0 6.1e-96 321.7 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III CoA_transf_3 PF02515.17 gi|327311209|ref|YP_004338106.1| - 7.3e-50 170.1 0.0 9.7e-50 169.7 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III CoA_trans PF01144.23 gi|327311210|ref|YP_004338107.1| - 6e-37 127.2 0.6 3.7e-33 114.7 0.0 2.9 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|327311210|ref|YP_004338107.1| - 5.6e-05 21.7 0.1 0.0001 20.8 0.1 1.3 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter Polysacc_synt_C PF14667.6 gi|327311211|ref|YP_004338108.1| - 0.012 15.6 7.2 0.012 15.6 7.2 4.4 4 2 0 5 5 5 0 Polysaccharide biosynthesis C-terminal domain Epimerase PF01370.21 gi|327311212|ref|YP_004338109.1| - 1.2e-54 185.4 0.2 1.9e-54 184.7 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|327311212|ref|YP_004338109.1| - 5.9e-45 154.1 0.0 1.5e-44 152.8 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|327311212|ref|YP_004338109.1| - 5.8e-18 65.0 0.0 9.1e-18 64.3 0.0 1.2 1 1 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|327311212|ref|YP_004338109.1| - 8.5e-16 57.8 0.0 1.2e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|327311212|ref|YP_004338109.1| - 1.7e-14 53.7 0.1 4.7e-13 48.9 0.1 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|327311212|ref|YP_004338109.1| - 4.5e-12 45.7 0.1 4e-07 29.5 0.0 2.7 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|327311212|ref|YP_004338109.1| - 4.8e-07 29.8 0.7 8e-07 29.1 0.1 1.6 2 0 0 2 2 2 1 NAD(P)H-binding adh_short PF00106.25 gi|327311212|ref|YP_004338109.1| - 7.5e-05 22.3 1.3 0.0023 17.4 0.1 2.9 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.13 gi|327311212|ref|YP_004338109.1| - 0.0011 18.6 0.1 0.0022 17.6 0.1 1.6 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.18 gi|327311212|ref|YP_004338109.1| - 0.0021 18.3 0.1 0.0044 17.3 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 gi|327311212|ref|YP_004338109.1| - 0.0033 17.4 0.3 0.013 15.5 0.1 1.9 1 1 1 2 2 2 1 KR domain Glyco_trans_4_4 PF13579.6 gi|327311212|ref|YP_004338109.1| - 0.015 15.8 1.3 0.015 15.8 1.3 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Pyr_redox PF00070.27 gi|327311212|ref|YP_004338109.1| - 0.057 14.0 0.1 0.12 12.9 0.1 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|327311212|ref|YP_004338109.1| - 0.083 12.5 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|327311212|ref|YP_004338109.1| - 0.11 12.7 0.0 0.28 11.3 0.0 1.7 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PALP PF00291.25 gi|327311213|ref|YP_004338110.1| - 1.6e-19 70.4 4.7 5.7e-11 42.4 2.1 3.5 3 1 0 3 3 3 2 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.6 gi|327311213|ref|YP_004338110.1| - 0.0093 15.3 3.1 0.019 14.3 3.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|327311213|ref|YP_004338110.1| - 0.1 12.6 1.2 0.16 12.0 1.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|327311213|ref|YP_004338110.1| - 0.11 12.3 6.4 0.59 9.9 6.4 2.0 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|327311213|ref|YP_004338110.1| - 0.22 11.6 0.3 0.46 10.5 0.3 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|327311213|ref|YP_004338110.1| - 0.36 11.0 1.1 1.2 9.4 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.11 gi|327311213|ref|YP_004338110.1| - 0.63 10.0 1.6 2 8.4 0.9 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|327311213|ref|YP_004338110.1| - 1.4 8.9 4.1 18 5.4 0.6 2.5 2 0 0 2 2 2 0 Nudix N-terminal DNA_RNApol_7kD PF03604.13 gi|327311213|ref|YP_004338110.1| - 1.5 8.6 5.2 16 5.3 0.2 2.4 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|327311213|ref|YP_004338110.1| - 5.3 7.0 5.4 25 4.9 0.5 2.6 1 1 1 2 2 2 0 zinc-ribbon domain Cyt_bd_oxida_I PF01654.17 gi|327311214|ref|YP_004338111.1| - 1.1e-64 218.6 34.5 2e-63 214.4 34.5 2.0 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_I PF01654.17 gi|327311215|ref|YP_004338112.1| - 1.1e-19 70.4 8.0 1.1e-19 70.4 8.0 2.2 1 1 0 2 2 2 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 gi|327311215|ref|YP_004338112.1| - 0.00028 20.4 14.9 0.00028 20.4 14.9 2.9 1 1 2 3 3 3 1 Cytochrome bd terminal oxidase subunit II DUF1182 PF06681.13 gi|327311215|ref|YP_004338112.1| - 0.28 10.8 4.6 0.048 13.3 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1182) Thermopsin PF05317.11 gi|327311216|ref|YP_004338113.1| - 2.1e-29 102.8 0.0 1.1e-28 100.4 0.0 1.9 1 1 0 1 1 1 1 Thermopsin AhpC-TSA PF00578.21 gi|327311217|ref|YP_004338114.1| - 4e-26 91.4 0.0 5.1e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|327311217|ref|YP_004338114.1| - 4.9e-17 61.5 1.4 9.5e-17 60.6 1.4 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|327311217|ref|YP_004338114.1| - 5.6e-12 45.6 0.0 7.1e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin VIT1 PF01988.19 gi|327311218|ref|YP_004338115.1| - 2.3e-08 34.2 26.1 3.3e-06 27.1 6.9 2.3 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|327311218|ref|YP_004338115.1| - 7.5e-08 32.9 0.7 1.4e-07 32.0 0.7 1.4 1 0 0 1 1 1 1 Rubrerythrin TPR_11 PF13414.6 gi|327311218|ref|YP_004338115.1| - 0.095 12.4 0.0 4.2 7.1 0.0 2.4 2 0 0 2 2 2 0 TPR repeat Tetraspanin PF00335.20 gi|327311218|ref|YP_004338115.1| - 1.5 8.4 5.5 2.7 7.6 5.5 1.4 1 0 0 1 1 1 0 Tetraspanin family TMEM141 PF15110.6 gi|327311218|ref|YP_004338115.1| - 1.8 9.2 7.3 4.8 7.8 1.7 2.6 1 1 1 2 2 2 0 TMEM141 protein family DctQ PF04290.12 gi|327311218|ref|YP_004338115.1| - 8.6 6.3 12.4 0.79 9.6 1.4 2.5 2 1 1 3 3 3 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF2070 PF09843.9 gi|327311218|ref|YP_004338115.1| - 8.9 4.5 12.0 13 4.0 12.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Potass_KdpF PF09604.10 gi|327311221|ref|YP_004338118.1| - 8.5 6.5 12.5 0.84 9.7 5.0 3.0 2 0 0 2 2 2 0 F subunit of K+-transporting ATPase (Potass_KdpF) Ribosomal_S30 PF04758.14 gi|327311222|ref|YP_004338119.1| - 9.5e-08 32.1 3.5 1e-07 32.0 3.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 P22_AR_C PF10548.9 gi|327311223|ref|YP_004338120.1| - 0.064 13.4 0.3 0.13 12.4 0.3 1.5 1 0 0 1 1 1 0 P22AR C-terminal domain Pantoate_transf PF02548.15 gi|327311224|ref|YP_004338121.1| - 1.2e-107 359.1 0.2 1.4e-107 358.9 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|327311224|ref|YP_004338121.1| - 6.3e-09 35.6 0.8 3.4e-08 33.2 0.8 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Robl_LC7 PF03259.17 gi|327311224|ref|YP_004338121.1| - 0.0037 17.0 0.1 0.028 14.2 0.0 2.1 2 0 0 2 2 2 1 Roadblock/LC7 domain Pterin_bind PF00809.22 gi|327311224|ref|YP_004338121.1| - 0.032 13.9 0.2 1.9 8.1 0.0 2.7 2 1 1 3 3 3 0 Pterin binding enzyme Peptidase_U32 PF01136.19 gi|327311224|ref|YP_004338121.1| - 1.7 7.8 4.0 2 7.5 0.0 2.6 3 1 1 4 4 4 0 Peptidase family U32 ApbA_C PF08546.11 gi|327311225|ref|YP_004338122.1| - 1.4e-34 119.0 0.3 1.9e-34 118.5 0.3 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|327311225|ref|YP_004338122.1| - 4.7e-13 49.0 0.1 7.5e-12 45.1 0.1 2.3 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GHMP_kinases_N PF00288.26 gi|327311226|ref|YP_004338123.1| - 0.0058 16.8 0.9 0.014 15.6 0.9 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain PPS_PS PF02006.16 gi|327311227|ref|YP_004338124.1| - 2.3e-77 258.5 0.9 2.8e-77 258.2 0.9 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase NPV_P10 PF05531.12 gi|327311229|ref|YP_004338126.1| - 0.12 12.9 1.6 52 4.4 0.1 3.5 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein DELLA PF12041.8 gi|327311229|ref|YP_004338126.1| - 0.36 10.8 1.5 5.2 7.0 0.1 2.5 2 0 0 2 2 2 0 Transcriptional regulator DELLA protein N terminal Herpes_capsid PF06112.11 gi|327311229|ref|YP_004338126.1| - 1.4 9.0 6.2 3.5 7.7 6.2 1.7 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein EGF_Tenascin PF18720.1 gi|327311231|ref|YP_004338128.1| - 0.18 11.9 2.7 0.48 10.5 2.7 1.7 1 0 0 1 1 1 0 Tenascin EGF domain Ribonuc_L-PSP PF01042.21 gi|327311232|ref|YP_004338129.1| - 7.9e-44 148.6 0.1 8.7e-44 148.4 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF3782 PF12644.7 gi|327311233|ref|YP_004338130.1| - 8.6e-17 61.1 12.9 5.7e-15 55.2 1.3 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|327311233|ref|YP_004338130.1| - 9.4e-10 38.3 0.4 2.1e-09 37.2 0.4 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Nup54 PF13874.6 gi|327311233|ref|YP_004338130.1| - 3.6e-06 27.1 3.4 0.0053 16.9 0.5 2.5 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 KxDL PF10241.9 gi|327311233|ref|YP_004338130.1| - 0.0003 21.0 2.8 0.0061 16.8 1.1 2.3 1 1 1 2 2 2 2 Uncharacterized conserved protein Spc7 PF08317.11 gi|327311233|ref|YP_004338130.1| - 0.0007 18.6 6.1 0.0011 17.9 6.1 1.3 1 0 0 1 1 1 1 Spc7 kinetochore protein GAS PF13851.6 gi|327311233|ref|YP_004338130.1| - 0.00076 18.9 1.7 0.0016 17.8 1.7 1.5 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding DUF948 PF06103.11 gi|327311233|ref|YP_004338130.1| - 0.00085 19.5 0.4 0.032 14.5 0.1 2.3 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) DUF16 PF01519.16 gi|327311233|ref|YP_004338130.1| - 0.00092 19.7 0.8 0.0023 18.4 0.8 1.8 1 1 0 1 1 1 1 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|327311233|ref|YP_004338130.1| - 0.0015 18.8 1.1 0.0038 17.5 1.0 1.7 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 MCPsignal PF00015.21 gi|327311233|ref|YP_004338130.1| - 0.0022 17.8 0.6 0.0034 17.2 0.6 1.3 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HemX PF04375.14 gi|327311233|ref|YP_004338130.1| - 0.0023 17.3 1.5 0.0032 16.8 1.5 1.2 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase YvrJ PF12841.7 gi|327311233|ref|YP_004338130.1| - 0.0023 17.4 0.8 2.4 7.8 0.0 2.8 2 1 1 3 3 3 1 YvrJ protein family MPS2 PF17060.5 gi|327311233|ref|YP_004338130.1| - 0.0024 17.2 4.6 0.29 10.3 0.1 2.1 1 1 1 2 2 2 2 Monopolar spindle protein 2 KASH_CCD PF14662.6 gi|327311233|ref|YP_004338130.1| - 0.0042 16.9 6.0 0.012 15.5 6.0 1.7 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH DUF1664 PF07889.12 gi|327311233|ref|YP_004338130.1| - 0.0052 16.8 0.6 0.023 14.7 0.5 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) SlyX PF04102.12 gi|327311233|ref|YP_004338130.1| - 0.0066 17.0 4.5 0.034 14.7 0.1 2.9 1 1 1 2 2 2 1 SlyX IFT57 PF10498.9 gi|327311233|ref|YP_004338130.1| - 0.008 15.2 0.4 0.011 14.8 0.4 1.2 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Exonuc_VII_L PF02601.15 gi|327311233|ref|YP_004338130.1| - 0.0085 15.7 1.9 0.012 15.2 1.9 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit AAA_13 PF13166.6 gi|327311233|ref|YP_004338130.1| - 0.013 14.2 0.2 0.016 13.9 0.2 1.1 1 0 0 1 1 1 0 AAA domain Arfaptin PF06456.13 gi|327311233|ref|YP_004338130.1| - 0.013 15.0 0.6 0.029 13.9 0.5 1.5 1 1 0 1 1 1 0 Arfaptin-like domain HSBP1 PF06825.12 gi|327311233|ref|YP_004338130.1| - 0.017 15.0 0.0 12 5.9 0.0 3.4 2 1 0 2 2 2 0 Heat shock factor binding protein 1 APG17 PF04108.12 gi|327311233|ref|YP_004338130.1| - 0.018 14.2 1.9 0.026 13.6 1.9 1.2 1 0 0 1 1 1 0 Autophagy protein Apg17 Syntaxin-6_N PF09177.11 gi|327311233|ref|YP_004338130.1| - 0.018 15.6 1.1 0.44 11.1 0.9 2.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Serine_rich PF08824.10 gi|327311233|ref|YP_004338130.1| - 0.018 15.1 1.0 1.7 8.6 0.5 3.0 2 1 0 2 2 2 0 Serine rich protein interaction domain SesA PF17107.5 gi|327311233|ref|YP_004338130.1| - 0.027 14.6 0.6 0.055 13.7 0.6 1.5 1 0 0 1 1 1 0 N-terminal domain on NACHT_NTPase and P-loop NTPases GFD1 PF17331.2 gi|327311233|ref|YP_004338130.1| - 0.027 14.6 0.3 0.027 14.6 0.3 2.4 2 0 0 2 2 1 0 GFD1 mRNA transport factor CREPT PF16566.5 gi|327311233|ref|YP_004338130.1| - 0.028 14.6 5.3 0.39 10.9 3.6 2.2 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour T7SS_ESX_EspC PF10824.8 gi|327311233|ref|YP_004338130.1| - 0.03 14.8 0.2 2.2 8.8 0.1 2.4 1 1 1 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm GCIP PF13324.6 gi|327311233|ref|YP_004338130.1| - 0.037 13.6 0.1 0.057 13.0 0.1 1.2 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting Phage_GPO PF05929.11 gi|327311233|ref|YP_004338130.1| - 0.041 13.5 0.7 0.069 12.8 0.7 1.4 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase ABC_tran_CTD PF16326.5 gi|327311233|ref|YP_004338130.1| - 0.055 13.7 10.1 0.32 11.3 0.8 2.8 2 1 1 3 3 2 0 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|327311233|ref|YP_004338130.1| - 0.058 13.6 0.1 0.093 12.9 0.1 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 gi|327311233|ref|YP_004338130.1| - 0.063 13.7 1.8 0.37 11.3 1.1 2.1 1 1 1 2 2 2 0 Snapin/Pallidin Noelin-1 PF12308.8 gi|327311233|ref|YP_004338130.1| - 0.069 13.1 0.5 11 6.1 0.3 2.8 1 1 2 3 3 3 0 Neurogenesis glycoprotein Apolipoprotein PF01442.18 gi|327311233|ref|YP_004338130.1| - 0.079 12.8 13.1 0.14 12.0 10.8 2.0 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain FapA PF03961.13 gi|327311233|ref|YP_004338130.1| - 0.08 11.5 0.6 0.11 11.0 0.6 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A WXG100 PF06013.12 gi|327311233|ref|YP_004338130.1| - 0.082 13.1 0.6 0.45 10.8 0.3 2.3 1 1 0 1 1 1 0 Proteins of 100 residues with WXG Hemagglutinin PF00509.18 gi|327311233|ref|YP_004338130.1| - 0.083 11.3 0.1 0.1 11.0 0.1 1.1 1 0 0 1 1 1 0 Haemagglutinin TMPIT PF07851.13 gi|327311233|ref|YP_004338130.1| - 0.084 12.1 0.3 0.11 11.8 0.3 1.2 1 0 0 1 1 1 0 TMPIT-like protein Laminin_II PF06009.12 gi|327311233|ref|YP_004338130.1| - 0.097 12.7 1.0 0.24 11.4 0.8 1.7 1 1 0 1 1 1 0 Laminin Domain II UPF0242 PF06785.11 gi|327311233|ref|YP_004338130.1| - 0.1 12.7 1.5 0.16 12.1 1.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus ARGLU PF15346.6 gi|327311233|ref|YP_004338130.1| - 0.1 12.4 17.3 0.33 10.8 17.3 1.8 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 YPEB PF14620.6 gi|327311233|ref|YP_004338130.1| - 0.13 11.5 1.7 0.33 10.2 1.6 1.5 1 1 0 1 1 1 0 YpeB sporulation Sec34 PF04136.15 gi|327311233|ref|YP_004338130.1| - 0.14 12.0 0.4 0.54 10.1 0.2 1.8 1 1 1 2 2 2 0 Sec34-like family WASH_WAHD PF11945.8 gi|327311233|ref|YP_004338130.1| - 0.16 11.4 0.7 0.24 10.9 0.7 1.2 1 0 0 1 1 1 0 WAHD domain of WASH complex DUF812 PF05667.11 gi|327311233|ref|YP_004338130.1| - 0.2 10.5 5.1 0.28 10.0 5.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) zf-C4H2 PF10146.9 gi|327311233|ref|YP_004338130.1| - 0.2 11.9 2.0 0.29 11.4 2.0 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein CorA PF01544.18 gi|327311233|ref|YP_004338130.1| - 0.22 10.8 2.3 0.41 9.9 2.3 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein TolA_bind_tri PF16331.5 gi|327311233|ref|YP_004338130.1| - 0.24 11.5 4.1 5.7 7.1 0.2 2.7 1 1 1 2 2 2 0 TolA binding protein trimerisation Atg14 PF10186.9 gi|327311233|ref|YP_004338130.1| - 0.26 10.3 2.6 0.35 9.9 2.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 V_ATPase_I PF01496.19 gi|327311233|ref|YP_004338130.1| - 0.29 9.0 0.5 0.35 8.7 0.5 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ApoC-I PF04691.12 gi|327311233|ref|YP_004338130.1| - 0.3 11.1 4.3 0.42 10.6 0.2 3.0 2 1 2 4 4 3 0 Apolipoprotein C-I (ApoC-1) Aldedh PF00171.22 gi|327311233|ref|YP_004338130.1| - 0.35 9.3 3.0 0.5 8.8 3.0 1.2 1 0 0 1 1 1 0 Aldehyde dehydrogenase family Peptidase_S66 PF02016.15 gi|327311233|ref|YP_004338130.1| - 0.44 10.7 1.8 17 5.5 0.1 2.4 1 1 1 2 2 2 0 LD-carboxypeptidase N-terminal domain TMF_DNA_bd PF12329.8 gi|327311233|ref|YP_004338130.1| - 0.45 10.5 6.4 2.3 8.3 5.5 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding Erythro-docking PF09277.11 gi|327311233|ref|YP_004338130.1| - 0.56 10.2 8.9 15 5.6 0.6 3.9 2 2 1 3 3 3 0 Erythronolide synthase, docking TPR_MLP1_2 PF07926.12 gi|327311233|ref|YP_004338130.1| - 0.59 10.2 8.5 0.83 9.7 6.9 2.0 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein XhlA PF10779.9 gi|327311233|ref|YP_004338130.1| - 0.66 10.2 5.5 3.7 7.8 3.5 2.6 2 0 0 2 2 2 0 Haemolysin XhlA Prefoldin_2 PF01920.20 gi|327311233|ref|YP_004338130.1| - 0.67 9.9 5.9 1.3 9.0 4.6 2.2 1 1 1 2 2 1 0 Prefoldin subunit DUF745 PF05335.13 gi|327311233|ref|YP_004338130.1| - 1 9.1 8.9 0.36 10.5 4.5 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF745) DUF848 PF05852.11 gi|327311233|ref|YP_004338130.1| - 1.2 9.3 6.2 2.6 8.1 3.6 2.3 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Histone_HNS PF00816.21 gi|327311233|ref|YP_004338130.1| - 2.3 9.1 9.1 2.6 8.9 3.1 2.9 1 1 1 2 2 2 0 H-NS histone family Spectrin PF00435.21 gi|327311233|ref|YP_004338130.1| - 2.3 8.7 8.4 2.4 8.7 5.8 2.3 2 1 0 2 2 1 0 Spectrin repeat FUSC PF04632.12 gi|327311233|ref|YP_004338130.1| - 3.1 6.2 5.2 4.1 5.8 5.2 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family GTP_EFTU PF00009.27 gi|327311234|ref|YP_004338131.1| - 3.3e-52 176.9 0.0 4.9e-52 176.3 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|327311234|ref|YP_004338131.1| - 1.2e-37 128.6 0.1 5.4e-37 126.5 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|327311234|ref|YP_004338131.1| - 4.6e-19 68.6 2.2 1.5e-18 66.9 2.2 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|327311234|ref|YP_004338131.1| - 2.1e-07 30.7 0.8 5.3e-07 29.5 0.8 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|327311234|ref|YP_004338131.1| - 8e-05 22.7 0.1 0.00051 20.1 0.1 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|327311234|ref|YP_004338131.1| - 0.00014 21.4 0.6 0.0017 17.9 0.2 2.6 2 1 0 2 2 2 1 Ferrous iron transport protein B Septin PF00735.18 gi|327311234|ref|YP_004338131.1| - 0.047 13.0 0.0 0.11 11.8 0.0 1.6 1 0 0 1 1 1 0 Septin Ribosomal_S10 PF00338.22 gi|327311235|ref|YP_004338132.1| - 1.1e-25 89.7 0.0 1.2e-25 89.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|327311235|ref|YP_004338132.1| - 0.025 15.4 0.0 0.041 14.7 0.0 1.3 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain Ribosomal_L11 PF00298.19 gi|327311235|ref|YP_004338132.1| - 0.064 13.8 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain MFS_1 PF07690.16 gi|327311236|ref|YP_004338133.1| - 4.2e-21 75.3 56.3 6.7e-16 58.1 14.8 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Radical_SAM PF04055.21 gi|327311237|ref|YP_004338134.1| - 4.1e-06 27.3 0.0 9.5e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|327311237|ref|YP_004338134.1| - 0.035 14.4 0.0 0.067 13.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Presenilin PF01080.17 gi|327311238|ref|YP_004338135.1| - 0.069 11.9 23.0 0.034 12.9 11.3 2.1 2 0 0 2 2 2 0 Presenilin Ebola_NP PF05505.12 gi|327311238|ref|YP_004338135.1| - 0.1 10.9 0.1 0.13 10.5 0.1 1.1 1 0 0 1 1 1 0 Ebola nucleoprotein Translin PF01997.16 gi|327311240|ref|YP_004338137.1| - 7.9e-19 68.5 0.3 1.1e-17 64.7 0.3 2.0 1 1 0 1 1 1 1 Translin family SurA_N_3 PF13624.6 gi|327311240|ref|YP_004338137.1| - 0.031 14.1 0.3 0.11 12.3 0.1 1.8 2 0 0 2 2 2 0 SurA N-terminal domain MbeD_MobD PF04899.12 gi|327311240|ref|YP_004338137.1| - 0.053 13.6 0.0 14 5.9 0.0 2.8 2 1 0 2 2 2 0 MbeD/MobD like Amidase PF01425.21 gi|327311241|ref|YP_004338138.1| - 4.1e-83 279.8 6.5 1.2e-81 274.9 6.5 2.0 1 1 0 1 1 1 1 Amidase Lactamase_B PF00753.27 gi|327311242|ref|YP_004338139.1| - 1.4e-14 54.6 5.2 2.3e-14 53.9 5.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|327311242|ref|YP_004338139.1| - 7e-05 22.8 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|327311242|ref|YP_004338139.1| - 0.0054 16.3 0.1 0.0089 15.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HEPN PF05168.14 gi|327311243|ref|YP_004338140.1| - 7.2e-20 71.3 0.2 8.5e-20 71.0 0.2 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|327311244|ref|YP_004338141.1| - 1.1e-09 38.4 0.0 1.3e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327311244|ref|YP_004338141.1| - 6.9e-07 29.3 0.0 9.5e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF4129 PF13559.6 gi|327311244|ref|YP_004338141.1| - 0.028 14.7 0.1 0.11 12.8 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) DUF294 PF03445.13 gi|327311244|ref|YP_004338141.1| - 0.085 12.7 0.0 0.15 11.8 0.0 1.6 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HAD_2 PF13419.6 gi|327311245|ref|YP_004338142.1| - 1.9e-26 93.2 0.0 2.4e-26 92.9 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|327311245|ref|YP_004338142.1| - 1e-13 52.1 0.2 1.9e-12 47.9 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|327311245|ref|YP_004338142.1| - 5.4e-09 36.7 0.4 1.6e-08 35.2 0.4 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|327311245|ref|YP_004338142.1| - 3.3e-07 30.3 0.0 9e-07 28.9 0.0 1.8 1 1 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|327311245|ref|YP_004338142.1| - 0.13 11.9 0.0 6.5 6.4 0.0 2.1 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|327311245|ref|YP_004338142.1| - 0.17 11.4 0.0 5.3 6.5 0.0 2.5 3 0 0 3 3 3 0 Sucrose-6F-phosphate phosphohydrolase Usp PF00582.26 gi|327311246|ref|YP_004338143.1| - 1.7e-40 138.8 2.2 1.9e-40 138.6 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|327311246|ref|YP_004338143.1| - 0.00011 21.8 0.2 0.0017 17.8 0.1 2.0 1 1 0 2 2 2 1 Xylose isomerase-like TIM barrel CBS PF00571.28 gi|327311248|ref|YP_004338145.1| - 1e-26 93.2 6.8 9.7e-14 51.6 1.0 2.1 2 0 0 2 2 2 2 CBS domain DUF2786 PF10979.8 gi|327311248|ref|YP_004338145.1| - 0.034 14.0 0.1 0.093 12.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) TmoB PF06234.12 gi|327311248|ref|YP_004338145.1| - 0.61 10.2 3.9 2.1 8.5 0.1 2.4 2 1 1 3 3 3 0 Toluene-4-monooxygenase system protein B (TmoB) AAA_13 PF13166.6 gi|327311249|ref|YP_004338146.1| - 0.0067 15.1 0.0 0.0068 15.1 0.0 1.0 1 0 0 1 1 1 1 AAA domain Vps39_2 PF10367.9 gi|327311249|ref|YP_004338146.1| - 0.075 13.5 0.2 0.11 12.9 0.2 1.3 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 SlyX PF04102.12 gi|327311249|ref|YP_004338146.1| - 0.087 13.5 1.7 14 6.4 0.1 2.7 2 2 2 4 4 4 0 SlyX TMEM95 PF15203.6 gi|327311249|ref|YP_004338146.1| - 0.094 12.4 0.6 0.13 11.9 0.6 1.2 1 0 0 1 1 1 0 TMEM95 family PhoU PF01895.19 gi|327311250|ref|YP_004338147.1| - 1.3e-06 28.7 0.9 4.6e-06 27.0 0.1 2.3 2 1 0 2 2 2 1 PhoU domain DUF4129 PF13559.6 gi|327311250|ref|YP_004338147.1| - 0.1 12.9 1.3 0.49 10.7 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) MoCF_biosynth PF00994.24 gi|327311251|ref|YP_004338148.1| - 3.9e-31 107.7 0.1 4.5e-31 107.5 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain LDcluster4 PF18306.1 gi|327311252|ref|YP_004338149.1| - 1.6e-16 60.2 0.0 2e-16 60.0 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family Nuc_deoxyrib_tr PF05014.15 gi|327311252|ref|YP_004338149.1| - 0.00079 19.4 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase LSDAT_prok PF18171.1 gi|327311252|ref|YP_004338149.1| - 0.013 14.7 0.0 0.027 13.7 0.0 1.4 2 0 0 2 2 2 0 SLOG in TRPM, prokaryote LD_cluster2 PF18163.1 gi|327311252|ref|YP_004338149.1| - 0.14 11.6 1.0 6.2 6.3 0.3 2.2 1 1 1 2 2 2 0 SLOG cluster2 PfkB PF00294.24 gi|327311254|ref|YP_004338151.1| - 5.2e-51 173.8 0.0 6.7e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Peptidase_M24 PF00557.24 gi|327311255|ref|YP_004338152.1| - 1.6e-39 135.8 0.0 2e-39 135.5 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|327311255|ref|YP_004338152.1| - 1.5e-09 38.6 0.0 2.6e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain CPBP PF02517.16 gi|327311256|ref|YP_004338153.1| - 6.3e-13 48.9 4.6 6.3e-13 48.9 4.6 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease AAA_19 PF13245.6 gi|327311257|ref|YP_004338154.1| - 0.00014 22.2 0.0 0.00046 20.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327311257|ref|YP_004338154.1| - 0.0019 18.6 0.0 0.0078 16.6 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|327311257|ref|YP_004338154.1| - 0.0029 18.0 0.0 0.023 15.1 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|327311257|ref|YP_004338154.1| - 0.013 15.5 0.0 0.059 13.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|327311257|ref|YP_004338154.1| - 0.024 14.4 0.0 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|327311257|ref|YP_004338154.1| - 0.036 13.8 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|327311257|ref|YP_004338154.1| - 0.047 13.7 0.0 0.64 10.0 0.0 2.1 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|327311257|ref|YP_004338154.1| - 0.074 12.3 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin TniB PF05621.11 gi|327311257|ref|YP_004338154.1| - 0.076 12.4 0.0 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 Bacterial TniB protein AAA_7 PF12775.7 gi|327311257|ref|YP_004338154.1| - 0.13 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region ATPase PF06745.13 gi|327311257|ref|YP_004338154.1| - 0.16 11.3 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 KaiC AAA_22 PF13401.6 gi|327311257|ref|YP_004338154.1| - 0.2 11.9 0.0 0.56 10.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF2201_N PF13203.6 gi|327311258|ref|YP_004338155.1| - 5.3e-17 62.3 0.1 8.1e-17 61.7 0.1 1.2 1 0 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.9 gi|327311258|ref|YP_004338155.1| - 8.7e-09 35.6 0.0 3.1e-08 33.8 0.0 1.9 2 0 0 2 2 2 1 VWA-like domain (DUF2201) Peptidase_M48 PF01435.18 gi|327311258|ref|YP_004338155.1| - 0.00011 22.0 0.1 0.00018 21.3 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M48 VWA PF00092.28 gi|327311258|ref|YP_004338155.1| - 0.0019 18.5 0.0 0.0034 17.7 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|327311258|ref|YP_004338155.1| - 0.026 13.9 3.6 0.23 10.8 3.6 2.4 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|327311258|ref|YP_004338155.1| - 0.1 13.2 0.0 0.27 11.9 0.0 1.7 1 0 0 1 1 1 0 von Willebrand factor type A domain PLDc_2 PF13091.6 gi|327311259|ref|YP_004338156.1| - 6.3e-14 52.0 0.0 1e-07 31.9 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|327311259|ref|YP_004338156.1| - 0.0073 16.4 0.1 0.018 15.2 0.1 1.7 1 0 0 1 1 1 1 Phospholipase D Active site motif SLATT_1 PF18181.1 gi|327311259|ref|YP_004338156.1| - 0.01 15.8 7.5 0.019 14.9 7.5 1.4 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 UbiA PF01040.18 gi|327311259|ref|YP_004338156.1| - 0.014 14.7 2.4 0.02 14.2 2.4 1.2 1 0 0 1 1 1 0 UbiA prenyltransferase family LPG_synthase_TM PF03706.13 gi|327311259|ref|YP_004338156.1| - 0.022 14.3 7.0 0.031 13.8 7.0 1.2 1 0 0 1 1 1 0 Lysylphosphatidylglycerol synthase TM region PEP-utilisers_N PF05524.13 gi|327311259|ref|YP_004338156.1| - 0.12 12.6 5.7 2.5 8.3 5.7 2.3 1 1 0 1 1 1 0 PEP-utilising enzyme, N-terminal TetR_N PF00440.23 gi|327311260|ref|YP_004338157.1| - 0.097 12.5 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Ribosomal_S4e PF00900.20 gi|327311261|ref|YP_004338158.1| - 2.9e-19 68.7 0.0 6.4e-19 67.6 0.0 1.6 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|327311261|ref|YP_004338158.1| - 3.4e-10 39.9 5.9 3.4e-10 39.9 5.9 1.6 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.25 gi|327311261|ref|YP_004338158.1| - 2.9e-09 36.5 0.7 6.3e-09 35.4 0.7 1.6 1 0 0 1 1 1 1 S4 domain Cys_Met_Meta_PP PF01053.20 gi|327311263|ref|YP_004338160.1| - 7.6e-114 380.2 0.0 8.4e-114 380.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|327311263|ref|YP_004338160.1| - 0.0002 20.5 0.0 0.00026 20.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|327311263|ref|YP_004338160.1| - 0.00044 19.5 0.0 0.00071 18.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|327311263|ref|YP_004338160.1| - 0.0012 18.3 0.4 0.0018 17.6 0.4 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.19 gi|327311263|ref|YP_004338160.1| - 0.0087 16.1 0.1 0.025 14.6 0.1 1.8 1 0 0 1 1 1 1 B12 binding domain Met_gamma_lyase PF06838.11 gi|327311263|ref|YP_004338160.1| - 0.015 13.9 0.1 0.025 13.1 0.1 1.5 1 1 0 1 1 1 0 Methionine gamma-lyase GDC-P PF02347.16 gi|327311263|ref|YP_004338160.1| - 0.032 13.1 0.1 0.044 12.6 0.1 1.1 1 0 0 1 1 1 0 Glycine cleavage system P-protein PfkB PF00294.24 gi|327311264|ref|YP_004338161.1| - 6.1e-14 52.0 0.0 7.5e-10 38.6 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|327311264|ref|YP_004338161.1| - 0.11 11.9 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase HrcA_DNA-bdg PF03444.15 gi|327311265|ref|YP_004338162.1| - 1.4e-30 104.8 0.1 2.5e-30 103.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|327311265|ref|YP_004338162.1| - 1.3e-27 96.0 6.4 3.1e-14 53.1 1.1 3.0 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|327311265|ref|YP_004338162.1| - 1.3e-11 44.7 0.1 5.9e-11 42.6 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|327311265|ref|YP_004338162.1| - 0.00044 20.1 1.1 0.00089 19.2 0.0 2.2 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|327311265|ref|YP_004338162.1| - 0.0028 17.5 0.5 0.027 14.4 0.4 2.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|327311265|ref|YP_004338162.1| - 0.0033 17.6 0.1 0.0071 16.5 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain IF3_N PF05198.16 gi|327311265|ref|YP_004338162.1| - 0.015 15.5 0.0 11 6.4 0.0 3.4 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain Rio2_N PF09202.11 gi|327311265|ref|YP_004338162.1| - 0.038 14.2 0.0 0.078 13.2 0.0 1.5 1 0 0 1 1 1 0 Rio2, N-terminal MarR_2 PF12802.7 gi|327311265|ref|YP_004338162.1| - 0.068 13.1 0.0 0.17 11.8 0.0 1.8 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|327311265|ref|YP_004338162.1| - 0.093 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family 2-Hacid_dh_C PF02826.19 gi|327311266|ref|YP_004338163.1| - 9.4e-55 184.7 0.0 1.2e-54 184.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|327311266|ref|YP_004338163.1| - 1.1e-30 106.0 0.0 1.3e-30 105.8 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|327311266|ref|YP_004338163.1| - 0.00041 20.0 0.0 0.00074 19.1 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|327311266|ref|YP_004338163.1| - 0.00052 20.2 0.1 0.0018 18.5 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|327311266|ref|YP_004338163.1| - 0.00071 19.7 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|327311266|ref|YP_004338163.1| - 0.0039 17.7 0.0 0.012 16.2 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|327311266|ref|YP_004338163.1| - 0.012 15.5 0.2 0.024 14.5 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|327311266|ref|YP_004338163.1| - 0.017 15.5 0.2 0.034 14.5 0.2 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ADH_zinc_N PF00107.26 gi|327311266|ref|YP_004338163.1| - 0.032 14.2 0.9 0.13 12.3 0.2 2.3 3 0 0 3 3 3 0 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|327311266|ref|YP_004338163.1| - 0.082 13.2 0.2 0.28 11.5 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain Aminotran_5 PF00266.19 gi|327311267|ref|YP_004338164.1| - 5.5e-23 81.5 0.0 6.7e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|327311267|ref|YP_004338164.1| - 7e-06 24.8 0.0 1e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.19 gi|327311267|ref|YP_004338164.1| - 0.11 11.0 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF89 PF01937.19 gi|327311268|ref|YP_004338165.1| - 6e-10 38.6 0.0 3.4e-07 29.5 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function DUF89 DUF1890 PF09001.11 gi|327311268|ref|YP_004338165.1| - 0.22 11.9 0.0 0.41 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1890) ZapB PF06005.12 gi|327311269|ref|YP_004338166.1| - 0.00097 19.5 2.6 0.0022 18.4 2.6 1.6 1 1 0 1 1 1 1 Cell division protein ZapB DUF4200 PF13863.6 gi|327311269|ref|YP_004338166.1| - 0.0028 18.0 1.0 0.0038 17.6 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4200) GP3_package PF16677.5 gi|327311269|ref|YP_004338166.1| - 0.0064 16.6 0.0 0.0098 16.0 0.0 1.3 1 0 0 1 1 1 1 DNA-packaging protein gp3 Prefoldin PF02996.17 gi|327311269|ref|YP_004338166.1| - 0.007 16.3 0.3 0.034 14.1 0.1 2.1 2 1 1 3 3 3 2 Prefoldin subunit GAS PF13851.6 gi|327311269|ref|YP_004338166.1| - 0.0077 15.6 0.4 0.011 15.1 0.4 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding DivIC PF04977.15 gi|327311269|ref|YP_004338166.1| - 0.0085 15.8 0.4 0.012 15.3 0.4 1.3 1 0 0 1 1 1 1 Septum formation initiator HHH_8 PF14716.6 gi|327311269|ref|YP_004338166.1| - 0.015 15.7 0.2 0.034 14.5 0.2 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain Sec8_exocyst PF04048.14 gi|327311269|ref|YP_004338166.1| - 0.018 15.0 0.3 5 7.0 0.0 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain Laminin_I PF06008.14 gi|327311269|ref|YP_004338166.1| - 0.019 14.7 0.1 0.026 14.3 0.1 1.1 1 0 0 1 1 1 0 Laminin Domain I DUF349 PF03993.12 gi|327311269|ref|YP_004338166.1| - 0.022 15.1 0.8 0.034 14.4 0.8 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) GPS2_interact PF15784.5 gi|327311269|ref|YP_004338166.1| - 0.034 14.6 0.3 0.056 13.9 0.1 1.4 2 0 0 2 2 1 0 G-protein pathway suppressor 2-interacting domain Tropomyosin PF00261.20 gi|327311269|ref|YP_004338166.1| - 0.039 13.3 0.9 0.057 12.8 0.9 1.2 1 0 0 1 1 1 0 Tropomyosin DUF948 PF06103.11 gi|327311269|ref|YP_004338166.1| - 0.039 14.2 0.1 0.1 12.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) ABC_tran_CTD PF16326.5 gi|327311269|ref|YP_004338166.1| - 0.047 13.9 1.7 0.087 13.1 1.7 1.4 1 0 0 1 1 1 0 ABC transporter C-terminal domain DUF465 PF04325.13 gi|327311269|ref|YP_004338166.1| - 0.051 13.6 0.6 0.1 12.7 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF465) EzrA PF06160.12 gi|327311269|ref|YP_004338166.1| - 0.055 11.6 0.3 0.071 11.3 0.3 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF1192 PF06698.11 gi|327311269|ref|YP_004338166.1| - 0.067 13.3 1.8 0.15 12.1 1.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) LPP PF04728.13 gi|327311269|ref|YP_004338166.1| - 0.068 13.6 0.1 0.13 12.7 0.1 1.4 1 0 0 1 1 1 0 Lipoprotein leucine-zipper DUF4618 PF15397.6 gi|327311269|ref|YP_004338166.1| - 0.076 12.4 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) Fzo_mitofusin PF04799.13 gi|327311269|ref|YP_004338166.1| - 0.087 12.4 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 fzo-like conserved region OmpH PF03938.14 gi|327311269|ref|YP_004338166.1| - 0.093 13.1 1.0 0.39 11.1 0.7 1.9 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) LUD_dom PF02589.15 gi|327311269|ref|YP_004338166.1| - 0.099 12.4 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 LUD domain CENP-Q PF13094.6 gi|327311269|ref|YP_004338166.1| - 0.11 12.7 1.3 0.17 12.0 1.3 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit bZIP_1 PF00170.21 gi|327311269|ref|YP_004338166.1| - 0.14 12.3 2.0 0.23 11.6 2.0 1.3 1 0 0 1 1 1 0 bZIP transcription factor tRNA_NucTransf2 PF09249.11 gi|327311270|ref|YP_004338167.1| - 2.4e-45 153.4 0.0 3.6e-45 152.8 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|327311270|ref|YP_004338167.1| - 7.1e-14 51.9 0.0 1.5e-13 50.8 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|327311270|ref|YP_004338167.1| - 0.00025 21.2 0.0 0.00042 20.5 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain LigT_PEase PF02834.16 gi|327311271|ref|YP_004338168.1| - 6.4e-28 96.8 0.9 3.9e-16 59.0 0.0 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|327311271|ref|YP_004338168.1| - 1.2e-14 54.5 0.0 1.5e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|327311271|ref|YP_004338168.1| - 2.3e-10 40.7 0.0 5.1e-10 39.6 0.0 1.4 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HTH_27 PF13463.6 gi|327311272|ref|YP_004338169.1| - 3.5e-05 24.2 0.0 5.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|327311272|ref|YP_004338169.1| - 0.00018 21.3 0.0 0.00067 19.5 0.0 1.9 2 0 0 2 2 2 1 MarR family DUF2250 PF10007.9 gi|327311272|ref|YP_004338169.1| - 0.0075 16.3 0.0 0.012 15.7 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.12 gi|327311272|ref|YP_004338169.1| - 0.019 15.1 0.0 0.027 14.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|327311272|ref|YP_004338169.1| - 0.031 14.2 0.2 0.41 10.6 0.0 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|327311272|ref|YP_004338169.1| - 0.049 13.6 0.2 0.16 11.9 0.1 1.9 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|327311272|ref|YP_004338169.1| - 0.071 13.5 0.1 0.1 12.9 0.1 1.4 1 1 0 1 1 1 0 Penicillinase repressor Cren7 PF11520.8 gi|327311274|ref|YP_004338171.1| - 1e-16 60.6 3.8 1.1e-16 60.5 3.8 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 TF_Zn_Ribbon PF08271.12 gi|327311275|ref|YP_004338172.1| - 1.9e-13 49.7 1.6 2.9e-13 49.1 1.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|327311275|ref|YP_004338172.1| - 2.1e-11 43.7 0.1 1.4e-05 25.0 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat zf-ribbon_3 PF13248.6 gi|327311275|ref|YP_004338172.1| - 4.1e-05 22.8 0.5 0.046 13.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|327311275|ref|YP_004338172.1| - 0.0028 17.3 0.4 0.5 10.2 0.0 2.2 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|327311275|ref|YP_004338172.1| - 0.006 16.2 1.2 0.011 15.4 1.2 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 gi|327311275|ref|YP_004338172.1| - 0.0086 16.0 1.1 0.022 14.7 0.5 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|327311275|ref|YP_004338172.1| - 0.028 14.1 3.3 0.22 11.3 3.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain ArfGap PF01412.18 gi|327311275|ref|YP_004338172.1| - 0.031 14.4 0.1 0.052 13.6 0.1 1.3 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf DZR PF12773.7 gi|327311275|ref|YP_004338172.1| - 0.066 13.2 0.3 0.26 11.3 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon Elf1 PF05129.13 gi|327311275|ref|YP_004338172.1| - 0.096 12.7 0.2 0.23 11.5 0.2 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Nudix_N_2 PF14803.6 gi|327311275|ref|YP_004338172.1| - 0.14 12.1 2.1 9.4 6.3 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal Prim_Zn_Ribbon PF08273.12 gi|327311275|ref|YP_004338172.1| - 0.15 12.4 0.2 0.25 11.7 0.2 1.3 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase zinc_ribbon_10 PF10058.9 gi|327311275|ref|YP_004338172.1| - 0.18 11.5 0.4 0.39 10.5 0.4 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein TackOD1 PF18551.1 gi|327311275|ref|YP_004338172.1| - 0.2 11.3 0.0 0.33 10.6 0.0 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-tcix PF14952.6 gi|327311275|ref|YP_004338172.1| - 0.21 11.3 2.4 5.7 6.7 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_S27e PF01667.17 gi|327311275|ref|YP_004338172.1| - 0.23 11.2 1.4 0.37 10.5 1.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|327311275|ref|YP_004338172.1| - 0.28 11.3 1.4 1.1 9.5 1.3 1.9 1 1 0 1 1 1 0 Zinc ribbon domain Vps36-NZF-N PF16988.5 gi|327311275|ref|YP_004338172.1| - 0.31 10.5 1.0 0.67 9.4 0.6 1.7 2 0 0 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zinc_ribbon_4 PF13717.6 gi|327311275|ref|YP_004338172.1| - 0.41 10.6 1.8 1.4 8.9 1.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Trm112p PF03966.16 gi|327311275|ref|YP_004338172.1| - 0.42 11.2 1.4 24 5.6 0.1 2.6 1 1 1 2 2 2 0 Trm112p-like protein Prok-RING_1 PF14446.6 gi|327311275|ref|YP_004338172.1| - 1.8 8.6 7.3 5.4 7.0 1.2 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Gar1 PF04410.14 gi|327311276|ref|YP_004338173.1| - 0.00054 19.8 0.0 0.00057 19.7 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Ribosomal_S8e PF01201.22 gi|327311277|ref|YP_004338174.1| - 3.8e-29 101.6 0.5 4.6e-29 101.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.17 gi|327311278|ref|YP_004338175.1| - 4e-15 56.5 0.0 5.5e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 SRP19 protein DUF3801 PF12687.7 gi|327311278|ref|YP_004338175.1| - 0.042 13.9 0.0 0.049 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) ATP_bind_1 PF03029.17 gi|327311279|ref|YP_004338176.1| - 6.3e-56 189.9 0.0 7.7e-56 189.6 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|327311279|ref|YP_004338176.1| - 1.9e-07 30.3 0.0 3.7e-06 26.1 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|327311279|ref|YP_004338176.1| - 2.1e-07 30.7 0.0 4.1e-06 26.5 0.0 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain CbiA PF01656.23 gi|327311279|ref|YP_004338176.1| - 1.5e-05 25.0 0.0 1.9e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CLP1_P PF16575.5 gi|327311279|ref|YP_004338176.1| - 1.8e-05 24.6 0.0 0.00035 20.4 0.0 2.4 2 1 1 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|327311279|ref|YP_004338176.1| - 9.2e-05 22.2 0.0 0.00027 20.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|327311279|ref|YP_004338176.1| - 0.0001 22.3 0.0 0.00089 19.3 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase cobW PF02492.19 gi|327311279|ref|YP_004338176.1| - 0.00014 21.5 0.0 0.056 13.0 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|327311279|ref|YP_004338176.1| - 0.00022 21.2 0.1 0.18 11.7 0.0 2.9 3 0 0 3 3 3 1 RsgA GTPase AAA_16 PF13191.6 gi|327311279|ref|YP_004338176.1| - 0.00022 21.6 0.0 0.00042 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain ArsA_ATPase PF02374.15 gi|327311279|ref|YP_004338176.1| - 0.00026 20.3 0.0 0.00038 19.7 0.0 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase SRP54 PF00448.22 gi|327311279|ref|YP_004338176.1| - 0.00028 20.6 0.0 0.0032 17.1 0.0 2.0 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain FeoB_N PF02421.18 gi|327311279|ref|YP_004338176.1| - 0.0011 18.5 0.0 0.057 12.9 0.0 2.4 2 0 0 2 2 2 1 Ferrous iron transport protein B MobB PF03205.14 gi|327311279|ref|YP_004338176.1| - 0.0012 18.7 0.0 0.0034 17.3 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|327311279|ref|YP_004338176.1| - 0.0023 18.1 0.0 0.0041 17.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|327311279|ref|YP_004338176.1| - 0.0041 16.8 0.0 0.0084 15.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|327311279|ref|YP_004338176.1| - 0.0047 17.4 0.0 0.007 16.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter NTPase_1 PF03266.15 gi|327311279|ref|YP_004338176.1| - 0.0049 16.8 0.0 0.29 11.0 0.0 2.8 2 1 1 3 3 3 1 NTPase APS_kinase PF01583.20 gi|327311279|ref|YP_004338176.1| - 0.0061 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_28 PF13521.6 gi|327311279|ref|YP_004338176.1| - 0.0064 16.7 0.0 0.018 15.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|327311279|ref|YP_004338176.1| - 0.0069 16.5 0.0 0.02 15.0 0.0 1.7 2 0 0 2 2 2 1 Helicase HerA, central domain Gtr1_RagA PF04670.12 gi|327311279|ref|YP_004338176.1| - 0.0071 15.7 0.0 0.62 9.4 0.0 2.1 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region PduV-EutP PF10662.9 gi|327311279|ref|YP_004338176.1| - 0.0078 16.0 0.1 1 9.1 0.0 3.2 2 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_7 PF12775.7 gi|327311279|ref|YP_004338176.1| - 0.0086 15.6 0.0 0.022 14.3 0.0 1.6 2 0 0 2 2 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|327311279|ref|YP_004338176.1| - 0.0094 16.2 0.0 0.038 14.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|327311279|ref|YP_004338176.1| - 0.01 16.4 0.0 0.027 15.0 0.0 1.8 1 1 1 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|327311279|ref|YP_004338176.1| - 0.015 14.5 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain KTI12 PF08433.10 gi|327311279|ref|YP_004338176.1| - 0.017 14.6 0.0 0.03 13.8 0.0 1.4 2 0 0 2 2 1 0 Chromatin associated protein KTI12 TrwB_AAD_bind PF10412.9 gi|327311279|ref|YP_004338176.1| - 0.023 13.6 0.0 0.033 13.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.13 gi|327311279|ref|YP_004338176.1| - 0.029 13.5 0.0 0.046 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|327311279|ref|YP_004338176.1| - 0.039 13.2 0.0 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1_Xtn PF16897.5 gi|327311279|ref|YP_004338176.1| - 0.063 13.3 0.0 0.95 9.5 0.0 2.5 3 0 0 3 3 3 0 C-terminal region of MMR_HSR1 domain MipZ PF09140.11 gi|327311279|ref|YP_004338176.1| - 0.065 12.5 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ AAA_10 PF12846.7 gi|327311279|ref|YP_004338176.1| - 0.076 11.9 0.0 0.096 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.12 gi|327311279|ref|YP_004338176.1| - 0.082 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Thymidylate_kin PF02223.17 gi|327311279|ref|YP_004338176.1| - 0.092 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase Ploopntkinase3 PF18751.1 gi|327311279|ref|YP_004338176.1| - 0.095 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 T2SSE PF00437.20 gi|327311279|ref|YP_004338176.1| - 0.096 11.7 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|327311279|ref|YP_004338176.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_31 PF13614.6 gi|327311279|ref|YP_004338176.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|327311279|ref|YP_004338176.1| - 0.17 11.8 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Dynamin_N PF00350.23 gi|327311279|ref|YP_004338176.1| - 0.19 11.8 0.1 10 6.1 0.1 2.2 2 0 0 2 2 2 0 Dynamin family AAA_15 PF13175.6 gi|327311279|ref|YP_004338176.1| - 0.3 10.8 0.0 0.38 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain Ribosomal_L21e PF01157.18 gi|327311280|ref|YP_004338177.1| - 6.7e-32 109.4 0.7 7.7e-32 109.2 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e CSD2 PF17876.1 gi|327311280|ref|YP_004338177.1| - 0.024 14.8 0.1 0.032 14.4 0.1 1.3 1 0 0 1 1 1 0 Cold shock domain RNA_pol_Rpb4 PF03874.16 gi|327311281|ref|YP_004338178.1| - 2.9e-10 40.5 0.5 3.3e-10 40.4 0.5 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 V-ATPase_H_N PF03224.14 gi|327311281|ref|YP_004338178.1| - 0.049 12.9 0.8 0.076 12.3 0.5 1.5 1 1 0 1 1 1 0 V-ATPase subunit H DUF655 PF04919.12 gi|327311282|ref|YP_004338179.1| - 5.4e-54 182.9 0.2 6.1e-54 182.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|327311282|ref|YP_004338179.1| - 8.1e-06 26.0 0.1 2.5e-05 24.5 0.1 1.8 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|327311282|ref|YP_004338179.1| - 0.0016 18.7 0.1 0.0033 17.6 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif GatB_Yqey PF02637.18 gi|327311282|ref|YP_004338179.1| - 0.047 13.6 0.3 1.9 8.3 0.0 2.1 1 1 1 2 2 2 0 GatB domain HHH PF00633.23 gi|327311282|ref|YP_004338179.1| - 0.22 11.5 1.1 1.8 8.6 0.1 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix motif eIF-5a PF01287.20 gi|327311283|ref|YP_004338180.1| - 3.2e-12 46.4 0.5 5.4e-12 45.7 0.5 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|327311283|ref|YP_004338180.1| - 5.2e-07 29.6 0.5 1e-06 28.7 0.1 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|327311283|ref|YP_004338180.1| - 0.0034 17.4 0.1 0.0067 16.4 0.1 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain DUF1947 PF09183.10 gi|327311283|ref|YP_004338180.1| - 0.012 15.9 0.3 0.27 11.6 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1947) Phage_TAC_7 PF10109.9 gi|327311283|ref|YP_004338180.1| - 0.026 14.6 0.0 0.046 13.8 0.0 1.4 1 0 0 1 1 1 0 Phage tail assembly chaperone proteins, E, or 41 or 14 HTH_36 PF13730.6 gi|327311284|ref|YP_004338181.1| - 9.4e-07 28.7 0.0 2.2e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|327311284|ref|YP_004338181.1| - 0.00032 20.5 0.1 0.00078 19.3 0.1 1.7 1 0 0 1 1 1 1 MarR family TP_methylase PF00590.20 gi|327311284|ref|YP_004338181.1| - 0.0026 17.7 0.0 0.0045 17.0 0.0 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HTH_11 PF08279.12 gi|327311284|ref|YP_004338181.1| - 0.038 13.9 0.0 0.079 12.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain DprA_WH PF17782.1 gi|327311284|ref|YP_004338181.1| - 0.04 14.0 0.0 0.1 12.7 0.0 1.7 1 0 0 1 1 1 0 DprA winged helix domain HTH_Mga PF08280.11 gi|327311284|ref|YP_004338181.1| - 0.05 13.6 0.0 0.096 12.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain RP-C PF03428.13 gi|327311284|ref|YP_004338181.1| - 0.076 12.7 0.1 1.1 8.8 0.1 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_27 PF13463.6 gi|327311284|ref|YP_004338181.1| - 0.088 13.3 0.3 11 6.6 0.0 3.2 2 1 1 3 3 3 0 Winged helix DNA-binding domain ThiF PF00899.21 gi|327311285|ref|YP_004338182.1| - 1.2e-61 208.2 0.0 1.4e-61 207.9 0.0 1.0 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|327311285|ref|YP_004338182.1| - 0.017 14.5 0.1 0.21 11.0 0.1 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|327311285|ref|YP_004338182.1| - 0.044 13.7 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|327311285|ref|YP_004338182.1| - 0.091 13.0 0.1 0.35 11.1 0.1 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Nramp PF01566.18 gi|327311286|ref|YP_004338183.1| - 1.6e-45 155.7 15.8 1.9e-45 155.4 15.8 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Avian_gp85 PF03708.14 gi|327311286|ref|YP_004338183.1| - 0.055 12.7 0.0 0.15 11.3 0.0 1.6 2 0 0 2 2 2 0 Avian retrovirus envelope protein, gp85 ABC_tran PF00005.27 gi|327311287|ref|YP_004338184.1| - 2.5e-30 105.8 0.0 3.2e-30 105.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327311287|ref|YP_004338184.1| - 1.9e-07 31.2 0.3 0.02 14.7 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327311287|ref|YP_004338184.1| - 0.00011 21.7 0.1 0.3 10.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|327311287|ref|YP_004338184.1| - 0.0089 15.6 0.0 0.33 10.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|327311287|ref|YP_004338184.1| - 0.01 16.1 2.1 0.36 11.1 0.4 2.9 2 1 1 3 3 3 0 AAA domain AAA_29 PF13555.6 gi|327311287|ref|YP_004338184.1| - 0.012 15.3 0.1 0.021 14.5 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|327311287|ref|YP_004338184.1| - 0.036 13.8 0.2 0.081 12.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|327311287|ref|YP_004338184.1| - 0.039 12.7 0.6 1.2 7.9 0.2 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|327311287|ref|YP_004338184.1| - 0.049 13.6 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain SbcCD_C PF13558.6 gi|327311287|ref|YP_004338184.1| - 0.056 13.7 0.1 1.4 9.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|327311287|ref|YP_004338184.1| - 0.057 13.6 0.5 0.15 12.2 0.5 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|327311287|ref|YP_004338184.1| - 0.07 13.6 0.3 0.11 12.9 0.3 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|327311287|ref|YP_004338184.1| - 0.12 12.2 0.2 0.22 11.4 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|327311287|ref|YP_004338184.1| - 0.13 12.6 0.3 0.16 12.4 0.3 1.4 1 1 0 1 1 1 0 AAA ATPase domain cobW PF02492.19 gi|327311287|ref|YP_004338184.1| - 0.14 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NPCBM_assoc PF10633.9 gi|327311288|ref|YP_004338185.1| - 0.00055 20.1 10.2 0.0037 17.5 0.1 5.4 5 0 0 5 5 5 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|327311288|ref|YP_004338185.1| - 0.011 16.0 4.2 0.011 16.0 4.2 4.6 5 2 0 5 5 5 0 Domain of unknown function DUF11 MG4 PF17789.1 gi|327311288|ref|YP_004338185.1| - 0.033 14.3 3.7 0.45 10.7 0.5 3.4 3 0 0 3 3 3 0 Macroglobulin domain MG4 CARDB PF07705.11 gi|327311288|ref|YP_004338185.1| - 0.4 10.9 13.8 0.13 12.5 0.6 4.8 3 1 1 4 4 4 0 CARDB MacB_PCD PF12704.7 gi|327311289|ref|YP_004338186.1| - 1.7e-10 41.6 12.5 1.7e-10 41.6 12.5 2.2 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|327311289|ref|YP_004338186.1| - 3e-10 40.4 2.0 3e-10 40.4 2.0 3.3 3 0 0 3 3 3 2 FtsX-like permease family Nre_N PF04894.12 gi|327311290|ref|YP_004338187.1| - 4.5e-84 282.5 0.0 5.9e-84 282.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|327311290|ref|YP_004338187.1| - 1e-16 60.8 0.3 1.9e-16 60.0 0.3 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Radical_SAM PF04055.21 gi|327311291|ref|YP_004338188.1| - 2.3e-15 57.3 0.0 6.7e-15 55.9 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily OCD_Mu_crystall PF02423.15 gi|327311292|ref|YP_004338189.1| - 8.8e-38 130.0 0.7 1.6e-37 129.2 0.7 1.4 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|327311292|ref|YP_004338189.1| - 3.1e-06 27.3 0.2 4.6e-06 26.7 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UPF0052 PF01933.18 gi|327311292|ref|YP_004338189.1| - 0.12 11.6 0.1 0.18 11.0 0.1 1.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0052 NAD_binding_7 PF13241.6 gi|327311292|ref|YP_004338189.1| - 0.14 12.6 0.6 0.6 10.6 0.4 2.0 1 1 1 2 2 2 0 Putative NAD(P)-binding HTH_24 PF13412.6 gi|327311294|ref|YP_004338191.1| - 1.1e-05 24.8 0.0 1.7e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|327311294|ref|YP_004338191.1| - 0.00029 20.8 0.0 0.00056 19.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|327311294|ref|YP_004338191.1| - 0.0097 15.7 0.9 0.025 14.4 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF977 PF06163.11 gi|327311294|ref|YP_004338191.1| - 0.019 14.9 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_5 PF01022.20 gi|327311294|ref|YP_004338191.1| - 0.022 14.6 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|327311294|ref|YP_004338191.1| - 0.073 13.0 0.1 0.18 11.7 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Peptidase_C39 PF03412.15 gi|327311294|ref|YP_004338191.1| - 0.19 11.6 0.0 0.27 11.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase C39 family Hira PF07569.11 gi|327311297|ref|YP_004338194.1| - 0.3 10.8 0.2 2.2 7.9 0.0 2.0 2 0 0 2 2 2 0 TUP1-like enhancer of split DUF5633 PF18656.1 gi|327311299|ref|YP_004338196.1| - 0.4 10.6 2.9 0.65 9.9 0.2 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5633) HD PF01966.22 gi|327311302|ref|YP_004338199.1| - 0.00013 22.1 0.2 0.00023 21.4 0.2 1.4 1 0 0 1 1 1 1 HD domain TauE PF01925.19 gi|327311303|ref|YP_004338200.1| - 3.3e-42 144.7 27.0 4.2e-42 144.4 27.0 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MccV PF17508.2 gi|327311303|ref|YP_004338200.1| - 0.027 15.0 1.2 0.18 12.4 0.0 2.6 2 1 0 2 2 2 0 Microcin V bacteriocin DUF1634 PF07843.11 gi|327311304|ref|YP_004338201.1| - 2.4e-29 101.4 9.4 2.8e-29 101.2 9.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) DUF2250 PF10007.9 gi|327311305|ref|YP_004338202.1| - 5.6e-26 90.5 0.1 7.2e-26 90.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.7 gi|327311305|ref|YP_004338202.1| - 0.00078 19.5 1.8 0.011 15.7 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|327311305|ref|YP_004338202.1| - 0.00082 19.4 3.1 0.0014 18.7 1.0 2.2 2 0 0 2 2 2 1 DprA winged helix domain MarR_2 PF12802.7 gi|327311305|ref|YP_004338202.1| - 0.0017 18.2 1.3 0.15 11.9 0.1 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|327311305|ref|YP_004338202.1| - 0.0097 15.4 0.1 0.024 14.2 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|327311305|ref|YP_004338202.1| - 0.021 14.5 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|327311305|ref|YP_004338202.1| - 0.025 14.5 0.1 0.095 12.6 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|327311305|ref|YP_004338202.1| - 0.029 14.1 1.4 0.27 11.1 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|327311305|ref|YP_004338202.1| - 0.069 13.1 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|327311305|ref|YP_004338202.1| - 0.15 12.0 0.0 0.4 10.7 0.0 1.7 2 0 0 2 2 2 0 MarR family CutA1 PF03091.15 gi|327311306|ref|YP_004338203.1| - 2.2e-37 126.9 0.0 2.5e-37 126.7 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF4873 PF16170.5 gi|327311306|ref|YP_004338203.1| - 0.052 13.8 0.0 0.067 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4873) PPP1R35_C PF15503.6 gi|327311306|ref|YP_004338203.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein phosphatase 1 regulatory subunit 35 C-terminus PhosphMutase PF10143.9 gi|327311307|ref|YP_004338204.1| - 3.5e-48 163.7 0.0 5.1e-48 163.2 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|327311307|ref|YP_004338204.1| - 1.1e-34 120.0 0.0 1.3e-34 119.7 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|327311307|ref|YP_004338204.1| - 4.7e-05 22.5 0.2 0.0002 20.4 0.2 1.8 1 1 0 1 1 1 1 Alkaline phosphatase Phosphodiest PF01663.22 gi|327311307|ref|YP_004338204.1| - 0.0012 18.5 0.0 0.0024 17.5 0.0 1.6 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Acetyltransf_1 PF00583.25 gi|327311308|ref|YP_004338205.1| - 2.3e-15 56.9 0.0 2.9e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|327311308|ref|YP_004338205.1| - 2.9e-09 37.2 0.1 4.4e-09 36.6 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|327311308|ref|YP_004338205.1| - 2.7e-07 30.5 0.0 4.4e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|327311308|ref|YP_004338205.1| - 3.2e-07 30.3 0.1 5.5e-07 29.6 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|327311308|ref|YP_004338205.1| - 9e-07 29.0 0.4 1.6e-06 28.2 0.4 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|327311308|ref|YP_004338205.1| - 0.002 18.3 0.1 0.0056 16.8 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|327311308|ref|YP_004338205.1| - 0.0026 17.4 0.0 0.0045 16.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|327311308|ref|YP_004338205.1| - 0.0027 18.4 0.1 0.0044 17.7 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF763 PF05559.11 gi|327311309|ref|YP_004338206.1| - 2.2e-118 395.0 0.0 2.6e-118 394.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) PGM_PMM_I PF02878.16 gi|327311310|ref|YP_004338207.1| - 6.6e-28 97.1 0.0 1.5e-27 95.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|327311310|ref|YP_004338207.1| - 2.2e-19 70.0 0.0 4.8e-19 68.9 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|327311310|ref|YP_004338207.1| - 5.4e-18 65.3 0.0 8.5e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|327311310|ref|YP_004338207.1| - 3.3e-11 43.2 0.6 1.1e-10 41.5 0.1 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Frankia_peptide PF14407.6 gi|327311310|ref|YP_004338207.1| - 0.026 14.5 0.0 0.098 12.7 0.0 2.0 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Glyco_trans_2_3 PF13632.6 gi|327311311|ref|YP_004338208.1| - 2.3e-15 57.0 2.0 2.3e-15 57.0 2.0 3.2 3 1 1 4 4 4 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|327311311|ref|YP_004338208.1| - 3.4e-14 53.3 0.0 8.3e-14 52.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|327311311|ref|YP_004338208.1| - 2e-12 47.3 0.0 2.9e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|327311311|ref|YP_004338208.1| - 7.2e-08 32.1 0.0 1.6e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 tRNA-synt_2 PF00152.20 gi|327311312|ref|YP_004338209.1| - 2e-74 250.5 0.0 3e-74 249.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|327311312|ref|YP_004338209.1| - 5.9e-09 35.8 0.0 1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|327311312|ref|YP_004338209.1| - 3.3e-06 26.8 0.0 0.022 14.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) DUF4518 PF15008.6 gi|327311312|ref|YP_004338209.1| - 0.11 11.6 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4518) PAGK PF15284.6 gi|327311313|ref|YP_004338210.1| - 0.065 13.1 0.7 0.15 12.0 0.7 1.6 1 0 0 1 1 1 0 Phage-encoded virulence factor DUF463 PF04317.12 gi|327311313|ref|YP_004338210.1| - 0.15 11.0 0.0 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 Metallophos_2 PF12850.7 gi|327311314|ref|YP_004338211.1| - 3.2e-30 105.5 0.1 3.9e-30 105.2 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|327311314|ref|YP_004338211.1| - 1.7e-06 27.5 0.1 0.00022 20.6 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|327311314|ref|YP_004338211.1| - 4.3e-06 27.4 1.3 0.00059 20.4 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF3663 PF12404.8 gi|327311314|ref|YP_004338211.1| - 0.11 12.6 0.0 0.31 11.1 0.0 1.7 1 0 0 1 1 1 0 Peptidase LysE PF01810.18 gi|327311315|ref|YP_004338212.1| - 1.5e-11 44.2 16.0 1.8e-11 43.9 16.0 1.1 1 0 0 1 1 1 1 LysE type translocator NAD_binding_8 PF13450.6 gi|327311316|ref|YP_004338213.1| - 3e-08 33.7 1.7 7.5e-08 32.5 1.7 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|327311316|ref|YP_004338213.1| - 1.2e-06 27.9 0.7 0.00033 19.8 0.4 2.4 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|327311316|ref|YP_004338213.1| - 1.6e-06 28.0 6.8 0.00085 19.0 6.9 3.2 1 1 1 2 2 2 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|327311316|ref|YP_004338213.1| - 5.7e-06 26.0 1.3 4.9e-05 22.9 2.2 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|327311316|ref|YP_004338213.1| - 6.3e-06 25.7 1.0 6.3e-06 25.7 1.0 2.2 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 gi|327311316|ref|YP_004338213.1| - 1.9e-05 24.1 0.5 3.9e-05 23.1 0.5 1.5 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|327311316|ref|YP_004338213.1| - 4.9e-05 22.7 1.9 4.9e-05 22.7 1.9 1.8 3 0 0 3 3 3 1 Thi4 family Pyr_redox_2 PF07992.14 gi|327311316|ref|YP_004338213.1| - 0.00051 19.4 2.0 0.0032 16.8 0.6 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|327311316|ref|YP_004338213.1| - 0.0014 17.4 0.3 0.0036 16.0 0.1 1.7 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|327311316|ref|YP_004338213.1| - 0.0018 17.4 6.7 0.0019 17.3 1.8 2.4 3 0 0 3 3 3 1 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|327311316|ref|YP_004338213.1| - 0.012 15.3 0.3 0.018 14.6 0.3 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|327311316|ref|YP_004338213.1| - 0.019 13.8 2.8 1.4 7.7 0.4 2.5 2 1 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.27 gi|327311316|ref|YP_004338213.1| - 0.18 12.4 4.0 0.79 10.3 0.2 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|327311316|ref|YP_004338213.1| - 1.4 7.9 2.9 1.3 8.0 0.5 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein NTP_transf_3 PF12804.7 gi|327311317|ref|YP_004338214.1| - 3.7e-16 59.9 0.2 8.1e-16 58.8 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain MttA_Hcf106 PF02416.16 gi|327311318|ref|YP_004338215.1| - 1.8e-17 62.4 0.9 9.9e-16 56.8 0.1 2.2 1 1 1 2 2 2 2 mttA/Hcf106 family Hom_end PF05204.14 gi|327311318|ref|YP_004338215.1| - 0.0054 16.9 0.0 0.0057 16.8 0.0 1.2 1 0 0 1 1 1 1 Homing endonuclease DUF2465 PF10239.9 gi|327311318|ref|YP_004338215.1| - 0.032 13.5 0.1 0.035 13.4 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2465) Glyco_hydro_12 PF01670.16 gi|327311319|ref|YP_004338216.1| - 1.8e-08 34.7 0.0 2.9e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 DUF4229 PF14012.6 gi|327311319|ref|YP_004338216.1| - 0.042 14.0 2.2 0.075 13.1 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Oxidored_q3 PF00499.20 gi|327311319|ref|YP_004338216.1| - 0.074 12.8 0.3 0.11 12.2 0.3 1.3 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4307 PF14155.6 gi|327311319|ref|YP_004338216.1| - 0.077 12.8 1.0 0.14 12.0 1.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Gelsolin PF00626.22 gi|327311320|ref|YP_004338217.1| - 0.037 13.9 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Gelsolin repeat TM_helix PF05552.12 gi|327311320|ref|YP_004338217.1| - 1.3 9.0 4.9 7.1 6.7 2.2 2.3 2 0 0 2 2 2 0 Conserved TM helix Asparaginase PF00710.20 gi|327311321|ref|YP_004338218.1| - 3.7e-58 196.2 0.2 5.6e-58 195.6 0.2 1.2 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|327311321|ref|YP_004338218.1| - 1.5e-28 99.3 0.0 6.5e-28 97.2 0.0 2.0 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|327311321|ref|YP_004338218.1| - 7.4e-14 50.8 0.0 1.3e-13 50.0 0.0 1.5 1 0 0 1 1 1 1 GatD N-terminal domain HD_3 PF13023.6 gi|327311322|ref|YP_004338219.1| - 1.2e-08 35.1 0.0 2.5e-08 34.0 0.0 1.7 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|327311322|ref|YP_004338219.1| - 1.2e-07 31.7 0.1 0.00024 20.9 0.1 2.1 2 0 0 2 2 2 2 HD containing hydrolase-like enzyme HD PF01966.22 gi|327311322|ref|YP_004338219.1| - 0.012 15.8 1.4 0.024 14.8 1.4 1.5 1 1 0 1 1 1 0 HD domain zf-ZPR1 PF03367.13 gi|327311323|ref|YP_004338220.1| - 3.3e-29 101.8 0.0 3.8e-29 101.6 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Prim_Zn_Ribbon PF08273.12 gi|327311323|ref|YP_004338220.1| - 0.00084 19.6 1.4 0.0017 18.6 1.4 1.5 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase DUF3107 PF11305.8 gi|327311323|ref|YP_004338220.1| - 0.024 14.9 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3107) UPF0547 PF10571.9 gi|327311323|ref|YP_004338220.1| - 0.046 13.8 3.4 0.13 12.4 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|327311323|ref|YP_004338220.1| - 0.12 11.8 2.3 1.1 8.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|327311323|ref|YP_004338220.1| - 0.46 10.2 0.2 0.46 10.2 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DNA_RNApol_7kD PF03604.13 gi|327311323|ref|YP_004338220.1| - 0.55 10.0 3.1 8.4 6.2 0.8 2.7 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF2070 PF09843.9 gi|327311324|ref|YP_004338221.1| - 3.9 5.7 8.4 4.6 5.4 8.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF5336 PF17270.2 gi|327311324|ref|YP_004338221.1| - 6.3 6.4 10.3 1.6e+02 1.9 10.3 2.1 1 1 0 1 1 1 0 Family of unknown function (DUF5336) AA_kinase PF00696.28 gi|327311325|ref|YP_004338222.1| - 1.6e-32 113.0 0.2 1.8e-32 112.8 0.2 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.17 gi|327311326|ref|YP_004338223.1| - 3.1e-52 177.2 0.0 3.9e-52 176.9 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF92 PF01940.16 gi|327311327|ref|YP_004338224.1| - 1.3e-48 165.5 9.9 1.5e-48 165.3 9.9 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 AIRS PF00586.24 gi|327311329|ref|YP_004338226.1| - 4.5e-15 56.1 0.1 8.5e-15 55.2 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Radical_SAM PF04055.21 gi|327311331|ref|YP_004338228.1| - 7.4e-18 65.5 0.0 1.1e-17 65.0 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Rib_5-P_isom_A PF06026.14 gi|327311332|ref|YP_004338229.1| - 6.4e-49 165.9 0.0 7.6e-49 165.6 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|327311332|ref|YP_004338229.1| - 9.6e-06 25.6 0.1 1.9e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 DeoR C terminal sensor domain CoA_trans PF01144.23 gi|327311332|ref|YP_004338229.1| - 0.1 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Coenzyme A transferase Sugar-bind PF04198.13 gi|327311332|ref|YP_004338229.1| - 0.11 11.6 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain CBS PF00571.28 gi|327311333|ref|YP_004338230.1| - 4.4e-27 94.3 1.8 1.2e-12 48.1 0.4 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|327311333|ref|YP_004338230.1| - 0.19 12.0 0.6 11 6.4 0.1 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain AFOR_N PF02730.15 gi|327311334|ref|YP_004338231.1| - 5e-38 131.0 0.2 7.2e-38 130.5 0.2 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|327311334|ref|YP_004338231.1| - 1.9e-16 60.1 0.0 3.5e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 HGWP PF03578.15 gi|327311334|ref|YP_004338231.1| - 0.36 10.4 1.7 1.2 8.7 0.2 2.6 3 0 0 3 3 3 0 HGWP repeat DUF608 PF04685.13 gi|327311335|ref|YP_004338232.1| - 2.2e-36 125.8 2.3 3.2e-30 105.5 0.2 3.2 3 1 0 3 3 3 2 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|327311335|ref|YP_004338232.1| - 4e-36 125.1 0.0 6e-36 124.5 0.0 1.3 1 0 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term DUF5127 PF17168.4 gi|327311335|ref|YP_004338232.1| - 0.0021 17.9 0.0 0.8 9.4 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF5127) Glyco_hydro_52 PF03512.13 gi|327311335|ref|YP_004338232.1| - 0.17 10.8 0.0 0.27 10.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 52 POR PF01558.18 gi|327311336|ref|YP_004338233.1| - 4.1e-37 127.9 1.1 1.8e-36 125.8 1.1 1.7 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|327311337|ref|YP_004338234.1| - 8.4e-14 50.7 14.9 1.1e-07 31.3 4.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327311337|ref|YP_004338234.1| - 6.8e-11 42.1 6.5 8.9e-11 41.8 6.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327311337|ref|YP_004338234.1| - 2.2e-09 37.0 13.2 2.6e-05 24.1 3.0 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|327311337|ref|YP_004338234.1| - 2.7e-09 37.0 8.4 4.3e-05 23.5 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327311337|ref|YP_004338234.1| - 5.9e-09 36.4 9.1 8.6e-09 35.9 9.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327311337|ref|YP_004338234.1| - 1.3e-08 34.9 8.7 1.8e-08 34.4 8.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327311337|ref|YP_004338234.1| - 2.6e-08 34.7 9.9 0.0014 19.6 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|327311337|ref|YP_004338234.1| - 4.2e-08 32.8 11.2 0.00036 20.5 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|327311337|ref|YP_004338234.1| - 6.4e-06 26.5 7.4 9.4e-06 26.0 7.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|327311337|ref|YP_004338234.1| - 0.00012 22.6 8.0 0.0096 16.4 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|327311337|ref|YP_004338234.1| - 0.0005 20.8 9.0 0.26 12.1 2.6 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|327311337|ref|YP_004338234.1| - 0.001 19.6 11.8 0.0058 17.2 11.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327311337|ref|YP_004338234.1| - 0.004 17.6 12.2 0.052 14.1 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|327311337|ref|YP_004338234.1| - 0.012 16.5 1.0 0.012 16.5 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|327311338|ref|YP_004338235.1| - 6.3e-74 248.6 3.2 1e-73 247.9 3.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|327311338|ref|YP_004338235.1| - 5.6e-26 90.8 0.0 1.3e-25 89.7 0.0 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|327311338|ref|YP_004338235.1| - 0.00067 19.5 0.0 0.0019 18.1 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|327311339|ref|YP_004338236.1| - 9.5e-26 90.4 1.5 1.5e-25 89.8 1.5 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Cupin_2 PF07883.11 gi|327311340|ref|YP_004338237.1| - 6e-14 51.5 0.6 7.7e-14 51.2 0.6 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|327311340|ref|YP_004338237.1| - 7.4e-08 32.4 0.0 8.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|327311340|ref|YP_004338237.1| - 1.9e-06 27.6 0.0 2.1e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Cupin ARD PF03079.14 gi|327311340|ref|YP_004338237.1| - 6.1e-05 23.2 0.0 7.2e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_3 PF05899.12 gi|327311340|ref|YP_004338237.1| - 0.00024 20.7 0.1 0.00033 20.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) DMSP_lyase PF16867.5 gi|327311340|ref|YP_004338237.1| - 0.0033 17.1 0.0 0.0041 16.8 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase PCO_ADO PF07847.12 gi|327311340|ref|YP_004338237.1| - 0.0085 15.6 0.0 0.56 9.6 0.0 2.0 1 1 1 2 2 2 2 PCO_ADO Cupin_8 PF13621.6 gi|327311340|ref|YP_004338237.1| - 0.027 14.2 0.0 0.035 13.8 0.0 1.1 1 0 0 1 1 1 0 Cupin-like domain CarboxypepD_reg PF13620.6 gi|327311341|ref|YP_004338238.1| - 4.9e-06 26.7 6.2 4.9e-06 26.7 6.2 5.8 5 1 1 6 6 6 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|327311341|ref|YP_004338238.1| - 0.00027 20.9 3.5 0.0042 17.0 0.3 3.6 2 1 2 4 4 4 1 CarboxypepD_reg-like domain MG4 PF17789.1 gi|327311341|ref|YP_004338238.1| - 0.011 15.9 6.6 0.062 13.5 0.2 4.3 4 1 1 5 5 5 0 Macroglobulin domain MG4 fn3_3 PF14686.6 gi|327311341|ref|YP_004338238.1| - 0.056 13.2 2.3 0.21 11.4 0.4 3.1 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II Rhamnogal_lyase PF06045.11 gi|327311341|ref|YP_004338238.1| - 0.17 11.3 0.5 0.6 9.5 0.1 2.0 2 0 0 2 2 2 0 Rhamnogalacturonate lyase family SdrD_B PF17210.3 gi|327311341|ref|YP_004338238.1| - 0.32 11.2 3.8 0.73 10.1 0.1 3.3 4 0 0 4 4 4 0 SdrD B-like domain DUF2207 PF09972.9 gi|327311341|ref|YP_004338238.1| - 0.38 9.5 3.5 13 4.4 2.1 2.9 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF824 PF05688.11 gi|327311341|ref|YP_004338238.1| - 0.44 10.4 3.7 3 7.8 0.4 3.3 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Big_1 PF02369.16 gi|327311341|ref|YP_004338238.1| - 4.4 7.4 15.9 0.065 13.3 1.0 4.8 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 1) Glyco_hydro_31 PF01055.26 gi|327311342|ref|YP_004338239.1| - 6.3e-127 424.4 0.2 7.6e-127 424.1 0.2 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|327311342|ref|YP_004338239.1| - 2.9e-16 59.5 0.1 6.4e-16 58.4 0.1 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like Raffinose_syn PF05691.12 gi|327311343|ref|YP_004338240.1| - 8e-43 146.3 0.1 9.7e-27 93.1 0.0 2.5 3 0 0 3 3 3 2 Raffinose synthase or seed imbibition protein Sip1 Succ_CoA_lig PF13607.6 gi|327311345|ref|YP_004338242.1| - 6.5e-52 175.0 0.5 1.3e-50 170.8 0.2 2.9 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|327311345|ref|YP_004338242.1| - 6e-21 75.1 0.2 5.2e-20 72.1 0.1 2.4 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|327311345|ref|YP_004338242.1| - 5.2e-11 43.1 0.9 1.1e-10 42.1 0.4 1.9 2 0 0 2 2 2 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|327311345|ref|YP_004338242.1| - 0.0015 18.5 0.0 0.013 15.5 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|327311345|ref|YP_004338242.1| - 0.0018 18.8 0.1 0.0082 16.7 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DUF4849 PF16141.5 gi|327311345|ref|YP_004338242.1| - 0.0078 15.5 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 Putative glycoside hydrolase Family 18, chitinase_18 PDH PF02153.17 gi|327311345|ref|YP_004338242.1| - 0.022 13.7 0.0 0.04 12.9 0.0 1.4 1 0 0 1 1 1 0 Prephenate dehydrogenase NAD_binding_2 PF03446.15 gi|327311345|ref|YP_004338242.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ATP-grasp_5 PF13549.6 gi|327311346|ref|YP_004338243.1| - 2.4e-76 256.1 0.0 2.6e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|327311346|ref|YP_004338243.1| - 2e-05 24.2 0.0 3.5e-05 23.5 0.0 1.4 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|327311346|ref|YP_004338243.1| - 0.0027 17.2 0.0 0.0039 16.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RimK PF08443.11 gi|327311346|ref|YP_004338243.1| - 0.023 14.3 0.0 0.032 13.8 0.0 1.2 1 0 0 1 1 1 0 RimK-like ATP-grasp domain ANTAR PF03861.14 gi|327311346|ref|YP_004338243.1| - 0.024 14.5 0.2 0.78 9.6 0.0 2.7 2 0 0 2 2 2 0 ANTAR domain ATP-grasp PF02222.22 gi|327311346|ref|YP_004338243.1| - 0.039 13.5 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain MFS_1 PF07690.16 gi|327311347|ref|YP_004338244.1| - 3.1e-44 151.3 43.1 3.1e-44 151.3 43.1 2.2 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|327311347|ref|YP_004338244.1| - 2.1e-05 23.6 10.6 5.2e-05 22.3 10.6 1.8 1 0 0 1 1 1 1 Sugar (and other) transporter UNC-93 PF05978.16 gi|327311347|ref|YP_004338244.1| - 0.046 13.4 0.2 0.046 13.4 0.2 2.4 3 0 0 3 3 3 0 Ion channel regulatory protein UNC-93 OATP PF03137.20 gi|327311347|ref|YP_004338244.1| - 0.08 11.2 5.1 0.1 10.9 0.2 2.7 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Acetyltransf_1 PF00583.25 gi|327311348|ref|YP_004338245.1| - 1e-09 38.7 1.6 3.9e-09 36.7 0.6 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|327311348|ref|YP_004338245.1| - 2.1e-07 31.3 0.2 3.6e-07 30.5 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|327311348|ref|YP_004338245.1| - 2e-06 27.7 0.0 2.9e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|327311348|ref|YP_004338245.1| - 0.00065 19.6 0.0 0.0011 18.9 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.7 gi|327311348|ref|YP_004338245.1| - 0.0032 17.6 0.9 0.0054 16.9 0.9 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|327311348|ref|YP_004338245.1| - 0.094 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Peptidase_S49 PF01343.18 gi|327311349|ref|YP_004338246.1| - 3.6e-18 66.0 2.3 4.5e-09 36.4 0.8 2.4 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|327311349|ref|YP_004338246.1| - 1.4e-10 41.4 0.2 1.8e-07 31.2 0.0 2.7 2 1 1 3 3 3 2 Clp protease ABC_transp_aux PF09822.9 gi|327311349|ref|YP_004338246.1| - 1.6e-05 24.5 0.0 2.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|327311349|ref|YP_004338246.1| - 0.0019 18.6 0.0 0.0097 16.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ECH_1 PF00378.20 gi|327311349|ref|YP_004338246.1| - 0.0052 16.1 0.5 0.16 11.3 0.0 2.1 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase PALP PF00291.25 gi|327311350|ref|YP_004338247.1| - 5.1e-67 226.4 4.5 6.3e-67 226.1 4.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.19 gi|327311350|ref|YP_004338247.1| - 0.023 14.7 0.0 0.045 13.8 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|327311350|ref|YP_004338247.1| - 0.18 11.7 1.3 0.5 10.3 1.3 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|327311350|ref|YP_004338247.1| - 0.72 9.7 3.7 1.5 8.6 3.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain AA_kinase PF00696.28 gi|327311351|ref|YP_004338248.1| - 9.2e-39 133.5 0.0 1.5e-38 132.8 0.0 1.3 2 0 0 2 2 2 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|327311352|ref|YP_004338249.1| - 1e-33 116.4 0.0 3.5e-33 114.6 0.0 1.9 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|327311352|ref|YP_004338249.1| - 8.6e-33 113.9 0.0 1.4e-32 113.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|327311352|ref|YP_004338249.1| - 0.026 14.6 0.0 0.046 13.8 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus RhodobacterPufX PF11511.8 gi|327311352|ref|YP_004338249.1| - 0.083 12.5 0.0 0.19 11.3 0.0 1.6 1 0 0 1 1 1 0 Intrinsic membrane protein PufX Epimerase PF01370.21 gi|327311352|ref|YP_004338249.1| - 0.084 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Gp_dh_C PF02800.20 gi|327311352|ref|YP_004338249.1| - 0.2 11.2 0.8 0.55 9.8 0.8 1.7 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Na_H_Exchanger PF00999.21 gi|327311353|ref|YP_004338250.1| - 2.1e-44 151.9 51.6 2.8e-44 151.5 51.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF805 PF05656.14 gi|327311353|ref|YP_004338250.1| - 0.048 14.1 0.5 0.048 14.1 0.5 3.3 2 2 0 3 3 3 0 Protein of unknown function (DUF805) EMP70 PF02990.16 gi|327311353|ref|YP_004338250.1| - 4.1 6.0 5.2 7.1 5.2 5.2 1.5 1 0 0 1 1 1 0 Endomembrane protein 70 Homoserine_dh PF00742.19 gi|327311354|ref|YP_004338251.1| - 9.1e-38 129.9 0.0 2.4e-37 128.5 0.0 1.6 1 1 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|327311354|ref|YP_004338251.1| - 0.0013 19.4 0.0 0.0052 17.4 0.0 2.0 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|327311354|ref|YP_004338251.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Polbeta PF18765.1 gi|327311356|ref|YP_004338253.1| - 5e-06 26.5 0.0 6.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|327311356|ref|YP_004338253.1| - 0.027 14.7 0.0 0.041 14.2 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase domain Ribosomal_L12_N PF16320.5 gi|327311356|ref|YP_004338253.1| - 0.05 13.3 0.2 0.11 12.2 0.2 1.6 1 0 0 1 1 1 0 Ribosomal protein L7/L12 dimerisation domain DUF86 PF01934.17 gi|327311357|ref|YP_004338254.1| - 4e-14 52.5 0.0 6.6e-14 51.8 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF86 Peptidase_M48 PF01435.18 gi|327311359|ref|YP_004338256.1| - 3.1e-33 115.2 0.0 4.5e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 NUDIX PF00293.28 gi|327311360|ref|YP_004338257.1| - 2e-18 66.7 0.1 2.3e-18 66.5 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|327311360|ref|YP_004338257.1| - 0.0019 18.2 0.1 0.011 15.8 0.1 1.9 1 1 0 1 1 1 1 NUDIX domain HypA PF01155.19 gi|327311362|ref|YP_004338259.1| - 8.6e-05 22.5 0.2 0.00011 22.2 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|327311362|ref|YP_004338259.1| - 0.00058 19.9 3.2 0.001 19.1 3.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|327311362|ref|YP_004338259.1| - 0.04 13.9 0.7 0.93 9.5 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DZR PF12773.7 gi|327311362|ref|YP_004338259.1| - 0.044 13.8 1.7 0.15 12.1 1.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.9 gi|327311362|ref|YP_004338259.1| - 0.049 13.7 3.5 0.56 10.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NRDD PF13597.6 gi|327311362|ref|YP_004338259.1| - 0.066 12.0 0.1 0.071 11.9 0.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase OrfB_Zn_ribbon PF07282.11 gi|327311362|ref|YP_004338259.1| - 0.13 12.2 0.8 0.18 11.7 0.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|327311362|ref|YP_004338259.1| - 0.18 11.4 2.3 3.9 7.1 0.4 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|327311362|ref|YP_004338259.1| - 0.44 10.4 5.0 7.2 6.6 0.1 2.5 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|327311362|ref|YP_004338259.1| - 0.75 9.6 6.0 5.6 6.8 6.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|327311362|ref|YP_004338259.1| - 0.88 9.4 8.2 0.61 9.9 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_4 PF13717.6 gi|327311362|ref|YP_004338259.1| - 0.89 9.5 5.4 3.3 7.7 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain HalOD2 PF18547.1 gi|327311362|ref|YP_004338259.1| - 4.7 7.2 5.0 27 4.8 0.1 2.1 2 0 0 2 2 2 0 Halobacterial output domain 2 Fer4_15 PF13459.6 gi|327311363|ref|YP_004338260.1| - 8.2e-12 45.7 0.0 9.6e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|327311363|ref|YP_004338260.1| - 4e-11 43.3 0.0 5.1e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|327311363|ref|YP_004338260.1| - 0.0018 18.0 2.3 0.11 12.4 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327311363|ref|YP_004338260.1| - 0.015 15.4 0.4 0.11 12.6 0.1 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain zf-C2H2_11 PF16622.5 gi|327311363|ref|YP_004338260.1| - 0.16 11.8 0.7 0.23 11.3 0.7 1.2 1 0 0 1 1 1 0 zinc-finger C2H2-type Ribosomal_L40e PF01020.17 gi|327311364|ref|YP_004338261.1| - 3.1e-07 30.2 2.7 3.5e-07 30.0 2.7 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|327311364|ref|YP_004338261.1| - 3.9e-06 26.4 4.5 5.2e-06 26.0 4.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|327311364|ref|YP_004338261.1| - 0.00014 21.9 0.8 0.00015 21.7 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|327311364|ref|YP_004338261.1| - 0.00028 20.1 3.4 0.00036 19.8 3.4 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DUF35_N PF12172.8 gi|327311364|ref|YP_004338261.1| - 0.00068 19.5 3.4 0.0011 18.8 3.4 1.3 1 1 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|327311364|ref|YP_004338261.1| - 0.0019 17.5 3.9 0.0025 17.1 3.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|327311364|ref|YP_004338261.1| - 0.003 17.6 0.3 0.0031 17.5 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_C2H2_13 PF18508.1 gi|327311364|ref|YP_004338261.1| - 0.012 15.2 0.2 0.012 15.2 0.2 2.0 2 0 0 2 2 2 0 Zinc finger domain zf-IS66 PF13005.7 gi|327311364|ref|YP_004338261.1| - 0.014 15.8 1.2 0.5 10.8 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 XPA_N PF01286.18 gi|327311364|ref|YP_004338261.1| - 0.015 15.4 2.3 0.12 12.4 0.4 2.2 2 0 0 2 2 2 0 XPA protein N-terminal DNA_RNApol_7kD PF03604.13 gi|327311364|ref|YP_004338261.1| - 0.029 14.0 9.0 0.48 10.2 8.1 2.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.6 gi|327311364|ref|YP_004338261.1| - 0.036 14.7 4.1 0.63 10.7 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|327311364|ref|YP_004338261.1| - 0.049 13.2 2.7 3 7.4 0.1 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding zf-ACC PF17848.1 gi|327311364|ref|YP_004338261.1| - 0.071 13.2 3.1 1.9 8.7 0.5 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain CpXC PF14353.6 gi|327311364|ref|YP_004338261.1| - 0.12 12.4 1.1 0.48 10.5 0.0 1.9 1 1 1 2 2 2 0 CpXC protein zf-CCHC PF00098.23 gi|327311364|ref|YP_004338261.1| - 0.15 12.2 6.8 2.4 8.4 1.0 2.2 2 0 0 2 2 2 0 Zinc knuckle Zn-ribbon_8 PF09723.10 gi|327311364|ref|YP_004338261.1| - 0.2 11.8 5.1 1.3 9.2 5.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-CCHC_2 PF13696.6 gi|327311364|ref|YP_004338261.1| - 0.2 11.5 4.7 3.7 7.5 0.2 2.3 2 0 0 2 2 2 0 Zinc knuckle zinc_ribbon_13 PF09855.9 gi|327311364|ref|YP_004338261.1| - 0.24 11.6 2.6 4.2 7.6 0.4 2.0 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_POL_M_15KD PF02150.16 gi|327311364|ref|YP_004338261.1| - 0.32 10.9 5.6 0.68 9.9 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin_2 PF18073.1 gi|327311364|ref|YP_004338261.1| - 0.7 9.7 6.4 12 5.7 6.9 2.0 1 1 1 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L37e PF01907.19 gi|327311364|ref|YP_004338261.1| - 0.89 9.8 8.2 1.1 9.5 1.4 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e Zea_mays_MuDR PF05928.11 gi|327311365|ref|YP_004338262.1| - 0.18 11.5 0.0 0.26 10.9 0.0 1.2 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) PDDEXK_5 PF11645.8 gi|327311365|ref|YP_004338262.1| - 0.21 11.6 0.0 0.33 10.9 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease Carb_kinase PF01256.17 gi|327311366|ref|YP_004338263.1| - 2.8e-53 180.9 1.7 4.1e-53 180.3 1.7 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|327311366|ref|YP_004338263.1| - 1.8e-43 148.4 2.0 2e-43 148.3 0.3 2.0 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|327311366|ref|YP_004338263.1| - 1.7e-07 30.9 2.9 8.3e-06 25.4 2.9 2.2 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Mannitol_dh_C PF08125.13 gi|327311366|ref|YP_004338263.1| - 0.06 12.8 0.0 0.091 12.2 0.0 1.2 1 0 0 1 1 1 0 Mannitol dehydrogenase C-terminal domain 3HCDH_RFF PF18321.1 gi|327311366|ref|YP_004338263.1| - 0.088 13.3 0.7 0.45 11.0 0.0 2.6 3 0 0 3 3 3 0 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain Abhydrolase_6 PF12697.7 gi|327311366|ref|YP_004338263.1| - 1.4 9.5 10.6 0.39 11.3 3.7 2.3 1 1 1 2 2 2 0 Alpha/beta hydrolase family Peptidase_M16 PF00675.20 gi|327311367|ref|YP_004338264.1| - 6.5e-18 65.1 0.0 1.2e-17 64.3 0.0 1.4 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|327311367|ref|YP_004338264.1| - 2.4e-14 53.7 0.0 5.1e-14 52.7 0.0 1.5 1 0 0 1 1 1 1 Peptidase M16 inactive domain HTH_24 PF13412.6 gi|327311368|ref|YP_004338265.1| - 3.6e-08 32.8 0.0 8.9e-08 31.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|327311368|ref|YP_004338265.1| - 3.4e-07 30.1 0.0 5.5e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|327311368|ref|YP_004338265.1| - 2.6e-06 27.2 0.1 5.4e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|327311368|ref|YP_004338265.1| - 2e-05 24.5 0.0 4.1e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|327311368|ref|YP_004338265.1| - 0.00016 21.4 0.1 0.00036 20.3 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|327311368|ref|YP_004338265.1| - 0.00038 20.5 0.1 0.00082 19.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Endomucin PF07010.12 gi|327311368|ref|YP_004338265.1| - 0.00045 20.3 8.9 0.00063 19.8 8.9 1.1 1 0 0 1 1 1 1 Endomucin HTH_AsnC-type PF13404.6 gi|327311368|ref|YP_004338265.1| - 0.00052 19.8 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_38 PF13936.6 gi|327311368|ref|YP_004338265.1| - 0.0015 18.2 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2250 PF10007.9 gi|327311368|ref|YP_004338265.1| - 0.0019 18.3 0.0 0.0032 17.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.6 gi|327311368|ref|YP_004338265.1| - 0.0022 17.7 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|327311368|ref|YP_004338265.1| - 0.0028 17.8 0.0 0.0052 17.0 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|327311368|ref|YP_004338265.1| - 0.0037 16.9 0.0 0.0076 15.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|327311368|ref|YP_004338265.1| - 0.0049 16.8 0.0 0.013 15.4 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|327311368|ref|YP_004338265.1| - 0.008 16.2 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|327311368|ref|YP_004338265.1| - 0.012 15.8 0.1 0.024 14.7 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|327311368|ref|YP_004338265.1| - 0.023 14.5 0.0 0.041 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|327311368|ref|YP_004338265.1| - 0.036 14.1 0.0 0.07 13.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|327311368|ref|YP_004338265.1| - 0.043 14.3 0.0 0.076 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mucin PF01456.17 gi|327311368|ref|YP_004338265.1| - 0.23 11.4 26.0 0.37 10.8 26.0 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein TPPK_C PF12555.8 gi|327311368|ref|YP_004338265.1| - 1.4 9.0 7.0 0.16 12.0 2.1 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF1180 PF06679.12 gi|327311368|ref|YP_004338265.1| - 3.3 8.1 10.7 5.1 7.5 10.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) Radical_SAM PF04055.21 gi|327311369|ref|YP_004338266.1| - 1.1e-20 74.6 0.1 6.8e-20 72.1 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|327311369|ref|YP_004338266.1| - 1.3e-19 70.3 0.0 2.6e-19 69.3 0.0 1.6 1 0 0 1 1 1 1 Wyosine base formation AAA_17 PF13207.6 gi|327311370|ref|YP_004338267.1| - 0.0035 17.8 0.0 0.0074 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Nuc_deoxyrib_tr PF05014.15 gi|327311370|ref|YP_004338267.1| - 0.0055 16.7 0.0 0.025 14.6 0.0 2.0 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase HetR_C PF18460.1 gi|327311370|ref|YP_004338267.1| - 0.047 13.6 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain PDDEXK_1 PF12705.7 gi|327311370|ref|YP_004338267.1| - 0.098 12.5 0.2 0.17 11.8 0.2 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DarA_N PF18788.1 gi|327311372|ref|YP_004338269.1| - 0.027 14.5 0.0 0.048 13.8 0.0 1.3 1 0 0 1 1 1 0 Defence against restriction A N-terminal Ribosomal_L34e PF01199.18 gi|327311373|ref|YP_004338270.1| - 7.3e-11 42.2 0.3 1.5e-10 41.2 0.3 1.4 1 1 0 1 1 1 1 Ribosomal protein L34e Cytidylate_kin2 PF13189.6 gi|327311374|ref|YP_004338271.1| - 2.2e-19 70.3 0.9 1.2e-16 61.3 0.9 2.1 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|327311374|ref|YP_004338271.1| - 1.7e-15 57.4 1.7 4.8e-08 33.0 0.4 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|327311374|ref|YP_004338271.1| - 3.2e-14 53.6 0.1 4.4e-14 53.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|327311374|ref|YP_004338271.1| - 4.3e-13 49.9 0.2 1.2e-12 48.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|327311374|ref|YP_004338271.1| - 2.3e-05 24.6 1.0 0.00018 21.7 1.0 2.3 1 1 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.6 gi|327311374|ref|YP_004338271.1| - 7.1e-05 23.0 0.3 0.00097 19.3 0.3 2.5 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|327311374|ref|YP_004338271.1| - 9.2e-05 22.3 0.1 0.0019 17.9 0.0 2.2 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|327311374|ref|YP_004338271.1| - 0.00012 22.5 0.0 0.00015 22.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain dNK PF01712.19 gi|327311374|ref|YP_004338271.1| - 0.00045 20.1 0.2 0.58 10.0 0.0 2.3 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|327311374|ref|YP_004338271.1| - 0.0005 20.3 1.1 0.003 17.8 0.1 2.0 1 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|327311374|ref|YP_004338271.1| - 0.00055 19.9 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 NTPase Zeta_toxin PF06414.12 gi|327311374|ref|YP_004338271.1| - 0.00072 18.9 0.0 0.0014 18.0 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|327311374|ref|YP_004338271.1| - 0.00087 19.7 0.0 0.0017 18.8 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|327311374|ref|YP_004338271.1| - 0.0015 18.7 0.0 0.0025 17.9 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase KTI12 PF08433.10 gi|327311374|ref|YP_004338271.1| - 0.0025 17.3 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|327311374|ref|YP_004338271.1| - 0.0044 17.3 0.1 0.01 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|327311374|ref|YP_004338271.1| - 0.0045 16.7 0.1 2.1 8.0 0.0 2.3 2 0 0 2 2 2 2 Thymidylate kinase AAA_24 PF13479.6 gi|327311374|ref|YP_004338271.1| - 0.0048 16.6 0.0 0.0082 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|327311374|ref|YP_004338271.1| - 0.0063 15.7 0.1 0.0098 15.1 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.12 gi|327311374|ref|YP_004338271.1| - 0.0065 16.4 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain TsaE PF02367.17 gi|327311374|ref|YP_004338271.1| - 0.01 15.9 0.1 0.02 14.9 0.1 1.6 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|327311374|ref|YP_004338271.1| - 0.015 15.0 0.3 0.033 13.9 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|327311374|ref|YP_004338271.1| - 0.018 15.4 0.5 0.13 12.6 0.2 2.0 1 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|327311374|ref|YP_004338271.1| - 0.019 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|327311374|ref|YP_004338271.1| - 0.023 14.5 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|327311374|ref|YP_004338271.1| - 0.026 14.4 0.0 0.047 13.6 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain Viral_helicase1 PF01443.18 gi|327311374|ref|YP_004338271.1| - 0.039 13.7 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|327311374|ref|YP_004338271.1| - 0.059 13.8 0.0 0.096 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase APS_kinase PF01583.20 gi|327311374|ref|YP_004338271.1| - 0.066 13.1 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_11 PF13086.6 gi|327311374|ref|YP_004338271.1| - 0.078 12.8 0.0 0.47 10.2 0.0 1.9 1 1 1 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|327311374|ref|YP_004338271.1| - 0.094 11.9 0.1 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|327311374|ref|YP_004338271.1| - 0.1 11.9 0.2 0.21 10.9 0.2 1.8 1 1 0 1 1 1 0 KaiC CoaE PF01121.20 gi|327311374|ref|YP_004338271.1| - 0.11 12.2 1.0 0.85 9.3 0.1 2.2 1 1 1 2 2 2 0 Dephospho-CoA kinase ABC_tran PF00005.27 gi|327311374|ref|YP_004338271.1| - 0.11 13.0 0.1 0.12 12.9 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_3 PF07726.11 gi|327311374|ref|YP_004338271.1| - 0.15 11.9 0.0 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|327311374|ref|YP_004338271.1| - 0.16 11.5 0.1 0.32 10.6 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|327311374|ref|YP_004338271.1| - 0.17 11.2 0.3 0.35 10.2 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Pyr_redox_2 PF07992.14 gi|327311375|ref|YP_004338272.1| - 3.3e-34 118.5 0.0 4.6e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327311375|ref|YP_004338272.1| - 8.3e-12 45.5 4.5 1.1e-06 29.1 0.6 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|327311375|ref|YP_004338272.1| - 1.4e-08 34.4 4.2 0.00016 21.0 0.1 3.5 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|327311375|ref|YP_004338272.1| - 3.7e-06 26.4 0.6 0.012 14.9 0.0 2.4 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|327311375|ref|YP_004338272.1| - 0.00011 22.3 5.1 0.00014 22.0 0.5 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|327311375|ref|YP_004338272.1| - 0.00021 20.7 7.3 0.032 13.6 1.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|327311375|ref|YP_004338272.1| - 0.00023 20.0 3.2 0.0004 19.2 0.3 2.2 2 0 0 2 2 2 1 HI0933-like protein Shikimate_DH PF01488.20 gi|327311375|ref|YP_004338272.1| - 0.00042 20.4 0.5 2.3 8.3 0.0 3.1 3 0 0 3 3 3 2 Shikimate / quinate 5-dehydrogenase FMO-like PF00743.19 gi|327311375|ref|YP_004338272.1| - 0.00059 18.4 0.0 0.015 13.7 0.0 2.0 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like GIDA PF01134.22 gi|327311375|ref|YP_004338272.1| - 0.0008 18.6 4.0 0.21 10.6 0.4 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.24 gi|327311375|ref|YP_004338272.1| - 0.00096 18.8 2.2 2.2 7.8 1.1 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|327311375|ref|YP_004338272.1| - 0.0011 18.1 11.9 0.15 11.2 1.4 3.6 3 1 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|327311375|ref|YP_004338272.1| - 0.0013 19.2 0.4 0.32 11.4 0.0 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|327311375|ref|YP_004338272.1| - 0.0048 16.2 5.2 0.12 11.6 0.1 2.4 3 0 0 3 3 3 2 FAD binding domain K_oxygenase PF13434.6 gi|327311375|ref|YP_004338272.1| - 0.0089 15.2 0.1 0.2 10.8 0.0 2.6 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.19 gi|327311375|ref|YP_004338272.1| - 0.014 14.7 0.1 0.19 11.1 0.0 2.4 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|327311375|ref|YP_004338272.1| - 0.099 12.5 1.0 0.33 10.8 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PcrB PF01884.17 gi|327311375|ref|YP_004338272.1| - 0.19 11.2 0.2 17 4.7 0.1 2.1 2 0 0 2 2 2 0 PcrB family NAD_binding_9 PF13454.6 gi|327311375|ref|YP_004338272.1| - 3.2 7.7 4.3 4.2 7.3 0.5 2.9 4 0 0 4 4 4 0 FAD-NAD(P)-binding ETF PF01012.21 gi|327311376|ref|YP_004338273.1| - 1.8e-44 151.8 3.8 2.2e-44 151.5 3.8 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain TPR_10 PF13374.6 gi|327311376|ref|YP_004338273.1| - 0.017 15.0 1.5 0.15 12.0 0.3 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat Mastoparan PF08249.11 gi|327311376|ref|YP_004338273.1| - 1.1 10.2 3.8 4.9 8.1 3.8 2.1 1 0 0 1 1 1 0 Mastoparan protein ETF_alpha PF00766.19 gi|327311377|ref|YP_004338274.1| - 2e-30 104.7 0.0 3.3e-30 104.0 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|327311377|ref|YP_004338274.1| - 5.3e-18 65.5 0.5 9.6e-18 64.7 0.5 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Topoisom_bac PF01131.20 gi|327311378|ref|YP_004338275.1| - 7.3e-76 255.8 0.1 2.5e-75 254.1 0.1 1.8 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|327311378|ref|YP_004338275.1| - 2.2e-21 76.0 0.0 7.8e-21 74.2 0.0 2.0 1 0 0 1 1 1 1 Toprim domain zf_Rg PF17915.1 gi|327311378|ref|YP_004338275.1| - 4.4e-14 51.6 0.6 1.1e-13 50.4 0.6 1.6 1 0 0 1 1 1 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|327311378|ref|YP_004338275.1| - 2.3e-13 50.3 0.0 6.4e-13 48.8 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|327311378|ref|YP_004338275.1| - 6.1e-07 29.8 0.0 0.024 15.0 0.0 3.6 3 0 0 3 3 3 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|327311378|ref|YP_004338275.1| - 2e-05 24.7 0.0 6.1e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|327311378|ref|YP_004338275.1| - 0.004 16.7 0.4 0.024 14.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain Zn_Tnp_IS1595 PF12760.7 gi|327311378|ref|YP_004338275.1| - 0.21 11.6 0.6 0.47 10.5 0.6 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF87 PF01935.17 gi|327311378|ref|YP_004338275.1| - 0.22 11.6 0.6 1.1 9.3 0.3 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain ABC2_membrane PF01061.24 gi|327311379|ref|YP_004338276.1| - 0.0035 16.8 21.5 0.0035 16.8 21.5 2.0 1 1 1 2 2 2 1 ABC-2 type transporter Pox_A9 PF04835.12 gi|327311379|ref|YP_004338276.1| - 2.3 8.4 5.8 0.79 9.9 1.9 2.2 2 0 0 2 2 2 0 A9 protein conserved region ABC_tran PF00005.27 gi|327311380|ref|YP_004338277.1| - 2e-28 99.6 0.0 2.7e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327311380|ref|YP_004338277.1| - 1.5e-13 51.2 0.4 1.8e-08 34.6 0.0 2.4 2 1 0 3 3 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|327311380|ref|YP_004338277.1| - 0.00037 20.9 0.1 0.00071 20.0 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|327311380|ref|YP_004338277.1| - 0.0021 17.8 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|327311380|ref|YP_004338277.1| - 0.0022 18.6 0.0 0.0039 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|327311380|ref|YP_004338277.1| - 0.0045 16.4 0.0 1.2 8.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|327311380|ref|YP_004338277.1| - 0.0069 16.8 0.2 0.038 14.4 0.0 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|327311380|ref|YP_004338277.1| - 0.01 15.9 0.0 0.028 14.5 0.0 1.7 2 0 0 2 2 1 0 AAA domain LAL_C2 PF18603.1 gi|327311380|ref|YP_004338277.1| - 0.015 15.5 0.2 0.2 11.9 0.0 2.6 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 ATPase PF06745.13 gi|327311380|ref|YP_004338277.1| - 0.019 14.3 0.0 3.3 7.0 0.0 2.2 2 0 0 2 2 2 0 KaiC NACHT PF05729.12 gi|327311380|ref|YP_004338277.1| - 0.023 14.6 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_27 PF13514.6 gi|327311380|ref|YP_004338277.1| - 0.023 14.3 0.0 0.083 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|327311380|ref|YP_004338277.1| - 0.027 14.2 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|327311380|ref|YP_004338277.1| - 0.03 14.4 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain TsaE PF02367.17 gi|327311380|ref|YP_004338277.1| - 0.03 14.3 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|327311380|ref|YP_004338277.1| - 0.042 14.1 0.1 0.08 13.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|327311380|ref|YP_004338277.1| - 0.048 13.6 0.0 0.097 12.6 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|327311380|ref|YP_004338277.1| - 0.063 13.3 0.1 0.33 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|327311380|ref|YP_004338277.1| - 0.064 12.4 0.1 0.63 9.2 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.22 gi|327311380|ref|YP_004338277.1| - 0.066 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|327311380|ref|YP_004338277.1| - 0.069 13.4 0.1 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|327311380|ref|YP_004338277.1| - 0.071 13.0 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase MobB PF03205.14 gi|327311380|ref|YP_004338277.1| - 0.073 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|327311380|ref|YP_004338277.1| - 0.082 13.1 0.2 0.15 12.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|327311380|ref|YP_004338277.1| - 0.11 12.0 1.8 4.3 6.9 0.0 2.8 2 1 0 2 2 2 0 AAA domain RecA PF00154.21 gi|327311380|ref|YP_004338277.1| - 0.12 11.8 0.0 0.27 10.7 0.0 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein MMR_HSR1 PF01926.23 gi|327311380|ref|YP_004338277.1| - 0.12 12.4 0.1 1.3 9.1 0.1 2.4 1 1 1 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.19 gi|327311380|ref|YP_004338277.1| - 0.16 11.6 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|327311380|ref|YP_004338277.1| - 0.17 10.5 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|327311380|ref|YP_004338277.1| - 0.18 12.1 0.2 0.23 11.8 0.2 1.5 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|327311380|ref|YP_004338277.1| - 0.19 11.6 0.0 0.37 10.7 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain QueF PF14489.6 gi|327311381|ref|YP_004338278.1| - 3.9e-11 42.9 0.1 4.2e-11 42.9 0.1 1.1 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.22 gi|327311381|ref|YP_004338278.1| - 2.7e-05 23.6 0.1 3.2e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I IF3_C PF00707.22 gi|327311381|ref|YP_004338278.1| - 0.013 15.4 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain Exo70 PF03081.15 gi|327311381|ref|YP_004338278.1| - 0.2 10.7 0.0 0.24 10.4 0.0 1.0 1 0 0 1 1 1 0 Exo70 exocyst complex subunit BPD_transp_1 PF00528.22 gi|327311383|ref|YP_004338280.1| - 1.4e-20 73.8 38.2 1.5e-13 50.9 15.8 2.9 2 1 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component YiaAB PF05360.14 gi|327311383|ref|YP_004338280.1| - 8 6.8 12.4 0.28 11.4 0.5 4.0 3 0 0 3 3 3 0 yiaA/B two helix domain ABC_tran PF00005.27 gi|327311384|ref|YP_004338281.1| - 1.4e-28 100.1 0.0 1.8e-28 99.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327311384|ref|YP_004338281.1| - 7.1e-10 39.2 0.2 0.00022 21.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|327311384|ref|YP_004338281.1| - 4.5e-05 23.3 0.0 6.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|327311384|ref|YP_004338281.1| - 0.00016 21.9 0.3 0.0098 16.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|327311384|ref|YP_004338281.1| - 0.00022 21.2 0.0 0.00044 20.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|327311384|ref|YP_004338281.1| - 0.00022 21.6 0.0 0.00031 21.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|327311384|ref|YP_004338281.1| - 0.00049 20.7 0.1 0.0008 20.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|327311384|ref|YP_004338281.1| - 0.00081 19.1 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|327311384|ref|YP_004338281.1| - 0.0014 18.1 0.1 1.2 8.5 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|327311384|ref|YP_004338281.1| - 0.0018 18.7 0.0 0.011 16.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|327311384|ref|YP_004338281.1| - 0.0059 15.5 0.1 2.1 7.1 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|327311384|ref|YP_004338281.1| - 0.054 13.4 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|327311384|ref|YP_004338281.1| - 0.055 13.2 0.1 0.086 12.6 0.1 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|327311384|ref|YP_004338281.1| - 0.056 12.6 0.0 0.13 11.4 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|327311384|ref|YP_004338281.1| - 0.074 13.1 0.2 0.2 11.7 0.2 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|327311384|ref|YP_004338281.1| - 0.084 13.0 0.1 0.14 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|327311384|ref|YP_004338281.1| - 0.11 11.8 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|327311384|ref|YP_004338281.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|327311384|ref|YP_004338281.1| - 0.15 11.9 0.2 0.29 11.0 0.2 1.4 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|327311384|ref|YP_004338281.1| - 0.21 11.3 0.1 0.49 10.1 0.1 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein Ribosomal_S28e PF01200.18 gi|327311385|ref|YP_004338282.1| - 4.7e-30 103.4 6.0 5.4e-30 103.2 6.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|327311386|ref|YP_004338283.1| - 7.6e-21 74.1 0.9 8.2e-21 74.0 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-HIT PF04438.16 gi|327311386|ref|YP_004338283.1| - 0.0063 16.4 0.4 0.014 15.3 0.4 1.6 1 1 0 1 1 1 1 HIT zinc finger zf-FCS PF06467.14 gi|327311386|ref|YP_004338283.1| - 0.01 15.8 0.8 0.017 15.1 0.8 1.4 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-ribbon_3 PF13248.6 gi|327311386|ref|YP_004338283.1| - 0.11 12.0 1.1 0.13 11.7 0.2 1.6 2 0 0 2 2 2 0 zinc-ribbon domain VATC PF18716.1 gi|327311386|ref|YP_004338283.1| - 0.17 11.8 3.3 0.6 10.0 3.3 1.8 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_L7Ae PF01248.26 gi|327311387|ref|YP_004338284.1| - 8.1e-30 102.4 0.6 1e-29 102.1 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|327311387|ref|YP_004338284.1| - 7.9e-05 22.5 0.1 0.00011 22.0 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|327311387|ref|YP_004338284.1| - 0.0036 17.4 0.0 0.0038 17.3 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 tRNA-synt_1d PF00750.19 gi|327311388|ref|YP_004338285.1| - 3e-34 118.5 0.1 3.3e-25 88.8 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|327311388|ref|YP_004338285.1| - 1.5e-28 99.4 0.0 8.3e-28 96.9 0.0 2.2 2 1 1 3 3 3 1 DALR anticodon binding domain tRNA-synt_1 PF00133.22 gi|327311388|ref|YP_004338285.1| - 0.0023 16.3 0.2 2.6 6.2 0.0 3.0 3 0 0 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|327311388|ref|YP_004338285.1| - 0.0027 16.5 0.0 0.17 10.6 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|327311388|ref|YP_004338285.1| - 0.034 13.5 0.0 0.17 11.2 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|327311388|ref|YP_004338285.1| - 0.14 11.0 0.1 11 4.8 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class I (K) SelB-wing_1 PF09105.10 gi|327311389|ref|YP_004338286.1| - 0.055 13.4 0.2 0.091 12.7 0.2 1.4 1 0 0 1 1 1 0 Elongation factor SelB, winged helix SUI1 PF01253.22 gi|327311390|ref|YP_004338287.1| - 5.7e-17 62.0 0.3 9.4e-17 61.3 0.3 1.4 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|327311390|ref|YP_004338287.1| - 0.01 16.1 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) PNP_UDP_1 PF01048.20 gi|327311392|ref|YP_004338289.1| - 3.8e-40 137.6 0.0 4.3e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF2977 PF11192.8 gi|327311392|ref|YP_004338289.1| - 0.099 12.8 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2977) NurA PF09376.10 gi|327311393|ref|YP_004338290.1| - 1.8e-25 90.0 0.0 3.8e-25 89.0 0.0 1.5 1 1 0 1 1 1 1 NurA domain Radical_SAM PF04055.21 gi|327311394|ref|YP_004338291.1| - 3.9e-21 76.2 0.0 1.2e-20 74.6 0.0 1.7 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|327311394|ref|YP_004338291.1| - 0.00068 19.8 0.0 0.0012 19.0 0.0 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|327311394|ref|YP_004338291.1| - 0.01 16.1 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Peripla_BP_2 PF01497.18 gi|327311395|ref|YP_004338292.1| - 9.8e-25 87.5 0.0 1.6e-24 86.8 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein DUF4307 PF14155.6 gi|327311395|ref|YP_004338292.1| - 0.00053 19.8 6.0 0.0012 18.6 6.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4307) Mucin PF01456.17 gi|327311395|ref|YP_004338292.1| - 0.49 10.4 21.2 0.8 9.7 21.2 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF3439 PF11921.8 gi|327311395|ref|YP_004338292.1| - 5.4 7.0 15.1 9.9 6.2 15.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) FecCD PF01032.18 gi|327311396|ref|YP_004338293.1| - 6e-55 186.4 34.8 6.9e-55 186.2 34.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|327311396|ref|YP_004338293.1| - 0.00076 19.1 14.7 0.0014 18.2 14.6 1.7 1 1 0 1 1 1 1 ABC 3 transport family AAA_21 PF13304.6 gi|327311397|ref|YP_004338294.1| - 1.7e-17 64.2 0.0 1.3e-08 35.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|327311397|ref|YP_004338294.1| - 2.1e-17 63.9 0.0 1.6e-16 61.0 0.0 2.0 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|327311397|ref|YP_004338294.1| - 5.5e-10 39.1 0.0 0.00073 19.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|327311397|ref|YP_004338294.1| - 4.5e-07 30.6 0.0 6.7e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|327311397|ref|YP_004338294.1| - 0.00012 21.8 0.3 0.00027 20.6 0.0 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|327311397|ref|YP_004338294.1| - 0.00037 20.7 0.0 0.0014 18.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327311397|ref|YP_004338294.1| - 0.0007 20.0 0.1 0.0019 18.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|327311397|ref|YP_004338294.1| - 0.00082 18.3 0.0 0.027 13.3 0.0 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|327311397|ref|YP_004338294.1| - 0.0014 18.2 0.0 0.0041 16.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|327311397|ref|YP_004338294.1| - 0.0026 17.5 0.0 0.0088 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.6 gi|327311397|ref|YP_004338294.1| - 0.0038 16.0 0.0 0.0061 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|327311397|ref|YP_004338294.1| - 0.0045 17.4 0.0 0.01 16.3 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|327311397|ref|YP_004338294.1| - 0.0052 16.5 0.1 0.0084 15.8 0.1 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|327311397|ref|YP_004338294.1| - 0.017 15.0 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|327311397|ref|YP_004338294.1| - 0.023 14.0 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|327311397|ref|YP_004338294.1| - 0.038 14.0 0.0 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|327311397|ref|YP_004338294.1| - 0.038 14.0 0.0 0.88 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|327311397|ref|YP_004338294.1| - 0.054 13.8 0.0 0.09 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|327311397|ref|YP_004338294.1| - 0.064 12.3 0.1 0.16 11.0 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein cobW PF02492.19 gi|327311397|ref|YP_004338294.1| - 0.092 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|327311397|ref|YP_004338294.1| - 0.12 12.6 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|327311397|ref|YP_004338294.1| - 0.14 11.9 0.1 0.32 10.7 0.0 1.6 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SbcCD_C PF13558.6 gi|327311397|ref|YP_004338294.1| - 0.15 12.3 0.0 1.2 9.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.6 gi|327311397|ref|YP_004338294.1| - 0.16 12.3 0.0 0.33 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|327311397|ref|YP_004338294.1| - 0.18 11.7 0.0 0.29 11.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF3584 PF12128.8 gi|327311397|ref|YP_004338294.1| - 0.2 9.2 0.1 0.28 8.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_18 PF13238.6 gi|327311397|ref|YP_004338294.1| - 0.2 12.2 0.0 0.69 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|327311397|ref|YP_004338294.1| - 0.21 10.4 0.0 0.3 9.9 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) G-alpha PF00503.20 gi|327311397|ref|YP_004338294.1| - 0.24 10.5 0.0 0.33 10.1 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF1772 PF08592.11 gi|327311398|ref|YP_004338295.1| - 4.8 7.5 10.7 14 6.0 10.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) DUF131 PF01998.17 gi|327311398|ref|YP_004338295.1| - 5.4 6.8 8.7 0.14 11.8 2.3 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF131 DUF2628 PF10947.8 gi|327311398|ref|YP_004338295.1| - 5.6 7.4 6.9 0.62 10.5 1.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2628) DUF131 PF01998.17 gi|327311399|ref|YP_004338296.1| - 9.4e-17 60.4 4.9 9.4e-17 60.4 4.9 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 TRIQK PF15168.6 gi|327311399|ref|YP_004338296.1| - 6.5 6.7 9.4 0.4 10.6 1.8 2.0 2 0 0 2 2 2 0 Triple QxxK/R motif-containing protein family 4HBT PF03061.22 gi|327311400|ref|YP_004338297.1| - 1.4e-16 60.6 0.3 1.8e-16 60.2 0.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|327311400|ref|YP_004338297.1| - 0.027 14.6 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4442) DUF1286 PF06939.11 gi|327311401|ref|YP_004338298.1| - 3.7e-06 27.2 0.1 7.7e-06 26.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1286) YdjM PF04307.14 gi|327311401|ref|YP_004338298.1| - 3e-05 23.4 12.8 0.00018 20.9 12.8 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase FGase PF05013.12 gi|327311401|ref|YP_004338298.1| - 0.05 13.8 0.1 0.1 12.8 0.1 1.6 1 1 0 1 1 1 0 N-formylglutamate amidohydrolase DUF4514 PF14986.6 gi|327311401|ref|YP_004338298.1| - 0.064 13.2 0.3 1.9 8.5 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) TetR_C_16 PF17920.1 gi|327311401|ref|YP_004338298.1| - 0.082 13.1 1.3 0.082 13.1 1.3 2.0 1 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Bacteriocin_IIc PF10439.9 gi|327311401|ref|YP_004338298.1| - 2.4 8.3 6.5 6.6 6.9 6.5 1.7 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide ABC_tran PF00005.27 gi|327311403|ref|YP_004338300.1| - 9.3e-26 91.0 0.0 1.2e-25 90.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327311403|ref|YP_004338300.1| - 4.3e-10 39.9 1.6 6.2e-05 23.0 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|327311403|ref|YP_004338300.1| - 0.0021 17.7 0.2 0.0041 16.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|327311403|ref|YP_004338300.1| - 0.032 14.6 0.1 0.051 14.0 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|327311403|ref|YP_004338300.1| - 0.037 14.5 0.0 0.043 14.3 0.0 1.1 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|327311403|ref|YP_004338300.1| - 0.048 13.5 0.1 0.089 12.6 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 gi|327311403|ref|YP_004338300.1| - 0.061 13.0 0.4 0.096 12.4 0.4 1.6 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|327311403|ref|YP_004338300.1| - 0.22 11.4 0.1 0.41 10.6 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_27 PF13514.6 gi|327311403|ref|YP_004338300.1| - 0.24 11.0 0.0 0.37 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|327311403|ref|YP_004338300.1| - 0.26 10.7 0.2 2.9 7.3 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Trm112p PF03966.16 gi|327311405|ref|YP_004338302.1| - 4.6e-18 65.5 1.5 7.8e-18 64.8 1.5 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|327311405|ref|YP_004338302.1| - 0.00085 19.5 1.6 0.17 12.1 0.1 3.1 3 0 0 3 3 3 2 C4-type zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|327311405|ref|YP_004338302.1| - 0.052 14.3 2.5 0.072 13.9 2.5 1.3 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|327311405|ref|YP_004338302.1| - 0.069 13.2 0.4 0.1 12.6 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|327311405|ref|YP_004338302.1| - 0.23 11.3 7.2 0.85 9.6 0.0 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Phosphoesterase PF04185.14 gi|327311407|ref|YP_004338304.1| - 8.2e-66 222.6 0.1 1.4e-65 221.8 0.1 1.4 1 1 0 1 1 1 1 Phosphoesterase family Sulfatase PF00884.23 gi|327311407|ref|YP_004338304.1| - 0.057 12.8 0.0 0.62 9.4 0.0 2.2 2 0 0 2 2 2 0 Sulfatase NTP_transf_2 PF01909.23 gi|327311409|ref|YP_004338306.1| - 3.7e-06 27.2 0.0 4.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327311409|ref|YP_004338306.1| - 0.011 15.9 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase Kelch_1 PF01344.25 gi|327311409|ref|YP_004338306.1| - 0.13 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Kelch motif Kelch_4 PF13418.6 gi|327311409|ref|YP_004338306.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Galactose oxidase, central domain Asp_protease_2 PF13650.6 gi|327311411|ref|YP_004338308.1| - 0.00023 21.7 0.1 0.00083 19.9 0.1 1.8 1 1 1 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|327311411|ref|YP_004338308.1| - 0.00066 20.2 0.0 0.00096 19.7 0.0 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Putative_G5P PF17426.2 gi|327311411|ref|YP_004338308.1| - 0.17 12.0 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative Gamma DNA binding protein G5P V_ATPase_I PF01496.19 gi|327311412|ref|YP_004338309.1| - 1.5e-16 59.6 0.0 1e-10 40.3 0.0 2.2 2 0 0 2 2 2 2 V-type ATPase 116kDa subunit family GerE PF00196.19 gi|327311413|ref|YP_004338310.1| - 0.0058 16.2 0.1 0.011 15.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family COX1 PF00115.20 gi|327311414|ref|YP_004338311.1| - 1e-29 103.7 52.0 1e-29 103.7 52.0 2.3 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF3930 PF13067.6 gi|327311414|ref|YP_004338311.1| - 8.5 6.7 7.6 0.44 10.8 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3930) Wzy_C_2 PF11846.8 gi|327311414|ref|YP_004338311.1| - 9.9 6.0 9.5 1.7 8.6 1.8 3.5 3 0 0 3 3 3 0 Virulence factor membrane-bound polymerase, C-terminal MFS_1 PF07690.16 gi|327311415|ref|YP_004338312.1| - 1.6e-21 76.6 58.1 3.5e-14 52.5 22.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MS_channel PF00924.18 gi|327311416|ref|YP_004338313.1| - 1.1e-17 64.2 7.5 1.1e-17 64.2 7.5 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel Chlorosome_CsmC PF11098.8 gi|327311416|ref|YP_004338313.1| - 0.045 13.7 0.6 3.7 7.5 0.1 2.2 2 0 0 2 2 2 0 Chlorosome envelope protein C FtsK_4TM PF13491.6 gi|327311416|ref|YP_004338313.1| - 0.092 12.4 13.6 0.064 13.0 10.8 1.8 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE DUF1761 PF08570.10 gi|327311416|ref|YP_004338313.1| - 1 9.7 10.3 0.1 12.9 4.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) RDD PF06271.12 gi|327311416|ref|YP_004338313.1| - 6.1 7.1 12.8 46 4.2 12.8 2.2 1 1 0 1 1 1 0 RDD family PaREP1 PF05942.11 gi|327311417|ref|YP_004338314.1| - 2.2e-28 98.5 1.1 3e-28 98.1 1.1 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Rossmann-like PF10727.9 gi|327311417|ref|YP_004338314.1| - 0.066 13.1 0.2 0.097 12.5 0.2 1.2 1 0 0 1 1 1 0 Rossmann-like domain IF2_N PF04760.15 gi|327311418|ref|YP_004338315.1| - 0.064 13.1 0.1 0.36 10.7 0.0 2.0 1 1 2 3 3 3 0 Translation initiation factor IF-2, N-terminal region Amidohydro_1 PF01979.20 gi|327311423|ref|YP_004338320.1| - 4.1e-17 62.5 0.0 5.5e-16 58.8 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|327311423|ref|YP_004338320.1| - 1.1e-05 25.1 3.4 0.0037 16.8 0.1 2.6 1 1 1 2 2 2 2 Amidohydrolase family Radical_SAM PF04055.21 gi|327311424|ref|YP_004338321.1| - 6.7e-17 62.4 0.0 1.2e-16 61.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|327311424|ref|YP_004338321.1| - 0.044 13.2 0.0 0.28 10.6 0.0 2.0 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|327311425|ref|YP_004338322.1| - 2.6e-12 47.4 0.0 5.2e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily VitK2_biosynth PF02621.14 gi|327311426|ref|YP_004338323.1| - 6.6e-20 71.7 0.0 9.2e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.14 gi|327311427|ref|YP_004338324.1| - 9.6e-73 245.0 0.1 1.1e-72 244.8 0.1 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Ntox17 PF15524.6 gi|327311427|ref|YP_004338324.1| - 0.22 11.8 0.0 0.47 10.8 0.0 1.5 1 0 0 1 1 1 0 Novel toxin 17 Vut_1 PF02592.15 gi|327311428|ref|YP_004338325.1| - 8.5e-26 91.1 7.1 8.5e-26 91.1 7.1 1.8 2 0 0 2 2 2 1 Putative vitamin uptake transporter AsnC_trans_reg PF01037.21 gi|327311429|ref|YP_004338326.1| - 0.016 15.1 0.0 0.023 14.6 0.0 1.3 1 1 0 1 1 1 0 Lrp/AsnC ligand binding domain Pro-kuma_activ PF09286.11 gi|327311430|ref|YP_004338327.1| - 0.0013 19.1 0.0 0.0023 18.2 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|327311430|ref|YP_004338327.1| - 0.0021 17.4 0.0 0.014 14.6 0.0 2.2 2 1 0 2 2 2 1 Subtilase family 4HB_MCP_1 PF12729.7 gi|327311431|ref|YP_004338328.1| - 0.058 12.9 1.6 0.063 12.8 1.6 1.2 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Thermopsin PF05317.11 gi|327311432|ref|YP_004338329.1| - 1.7e-73 247.3 21.9 2e-73 247.1 21.9 1.0 1 0 0 1 1 1 1 Thermopsin Hemopexin PF00045.19 gi|327311432|ref|YP_004338329.1| - 0.31 11.0 3.9 1.1 9.3 0.4 2.5 2 0 0 2 2 2 0 Hemopexin Glycos_trans_3N PF02885.17 gi|327311433|ref|YP_004338330.1| - 0.017 14.9 1.5 0.46 10.4 0.1 2.4 2 1 0 2 2 2 0 Glycosyl transferase family, helical bundle domain Lactamase_B PF00753.27 gi|327311434|ref|YP_004338331.1| - 0.0058 16.7 7.6 0.048 13.7 7.6 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|327311434|ref|YP_004338331.1| - 0.024 14.1 0.0 0.061 12.8 0.0 1.7 2 0 0 2 2 2 0 Beta-lactamase superfamily domain SIR2 PF02146.17 gi|327311435|ref|YP_004338332.1| - 1.2e-55 188.1 0.0 1.4e-55 187.9 0.0 1.0 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|327311435|ref|YP_004338332.1| - 0.0015 18.6 0.6 0.0028 17.8 0.6 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Mu-like_Com PF10122.9 gi|327311435|ref|YP_004338332.1| - 0.0085 15.5 1.4 0.016 14.7 1.4 1.4 1 0 0 1 1 1 1 Mu-like prophage protein Com Zn_ribbon_SprT PF17283.2 gi|327311435|ref|YP_004338332.1| - 0.012 15.5 1.9 0.042 13.8 1.9 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|327311435|ref|YP_004338332.1| - 0.02 14.9 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|327311435|ref|YP_004338332.1| - 0.052 13.5 2.4 2 8.4 0.4 2.3 2 0 0 2 2 2 0 Nudix N-terminal DZR PF12773.7 gi|327311435|ref|YP_004338332.1| - 0.083 12.9 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|327311435|ref|YP_004338332.1| - 0.093 12.5 4.9 1.3 8.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.11 gi|327311435|ref|YP_004338332.1| - 0.13 12.3 0.4 0.21 11.6 0.4 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain zinc_ribbon_9 PF14369.6 gi|327311435|ref|YP_004338332.1| - 0.35 11.1 1.7 0.64 10.3 1.7 1.3 1 0 0 1 1 1 0 zinc-ribbon zf-RING_7 PF02591.15 gi|327311435|ref|YP_004338332.1| - 1.2 9.4 6.7 4 7.7 0.9 2.5 1 1 0 2 2 2 0 C4-type zinc ribbon domain DUF1610 PF07754.11 gi|327311435|ref|YP_004338332.1| - 1.9 8.5 5.5 1.9 8.5 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Lon_C PF05362.13 gi|327311436|ref|YP_004338333.1| - 1.3e-11 44.5 3.7 2.9e-11 43.3 3.7 1.5 1 1 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|327311436|ref|YP_004338333.1| - 0.08 12.8 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase DUF2207 PF09972.9 gi|327311437|ref|YP_004338334.1| - 0.025 13.4 0.2 0.029 13.1 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MerC PF03203.14 gi|327311437|ref|YP_004338334.1| - 0.22 12.0 5.5 0.53 10.8 4.9 1.7 1 1 1 2 2 2 0 MerC mercury resistance protein HHH PF00633.23 gi|327311439|ref|YP_004338336.1| - 6.2e-06 25.8 0.0 1.6e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HRDC PF00570.23 gi|327311439|ref|YP_004338336.1| - 0.0062 16.5 0.0 0.019 14.9 0.0 1.8 2 0 0 2 2 2 1 HRDC domain HHH_5 PF14520.6 gi|327311439|ref|YP_004338336.1| - 0.032 14.8 0.0 0.084 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Radical_SAM PF04055.21 gi|327311440|ref|YP_004338337.1| - 5.5e-19 69.2 0.0 8.1e-19 68.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|327311440|ref|YP_004338337.1| - 1.7e-06 28.3 0.0 2.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|327311440|ref|YP_004338337.1| - 9.9e-06 25.7 0.0 1.6e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPO22 PF08631.10 gi|327311441|ref|YP_004338338.1| - 0.15 11.5 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like GIY-YIG PF01541.24 gi|327311442|ref|YP_004338339.1| - 0.031 14.5 0.1 0.047 14.0 0.1 1.2 1 0 0 1 1 1 0 GIY-YIG catalytic domain PUA PF01472.20 gi|327311444|ref|YP_004338341.1| - 6.7e-14 51.6 0.0 9.8e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|327311444|ref|YP_004338341.1| - 1.1e-05 25.6 0.0 1.8e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain TGT_C2 PF14810.6 gi|327311444|ref|YP_004338341.1| - 4.7e-05 23.4 0.0 8.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase DUF1947 PF09183.10 gi|327311444|ref|YP_004338341.1| - 0.00039 20.7 0.8 0.00067 19.9 0.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) TruB-C_2 PF09157.11 gi|327311444|ref|YP_004338341.1| - 0.012 15.6 0.0 0.021 14.8 0.0 1.4 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal HTH_3 PF01381.22 gi|327311445|ref|YP_004338342.1| - 2.2e-12 46.8 0.6 3.7e-12 46.1 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|327311445|ref|YP_004338342.1| - 4.2e-09 36.6 0.6 1.1e-08 35.2 0.6 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|327311445|ref|YP_004338342.1| - 4.1e-05 23.4 0.4 0.0001 22.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|327311445|ref|YP_004338342.1| - 0.00036 20.5 0.0 0.00063 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|327311445|ref|YP_004338342.1| - 0.00086 19.6 0.4 0.0013 19.0 0.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain CENP-B_N PF04218.13 gi|327311445|ref|YP_004338342.1| - 0.2 11.3 0.1 0.4 10.3 0.1 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain GTP-bdg_N PF13167.6 gi|327311446|ref|YP_004338343.1| - 5.6e-18 65.4 0.0 1e-17 64.6 0.0 1.4 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|327311446|ref|YP_004338343.1| - 6.2e-16 58.5 0.0 1.1e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|327311446|ref|YP_004338343.1| - 2.7e-15 56.7 4.0 4.8e-15 55.9 4.0 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|327311446|ref|YP_004338343.1| - 7.9e-06 25.5 0.0 1.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B PduV-EutP PF10662.9 gi|327311446|ref|YP_004338343.1| - 0.0075 16.0 0.0 4.5 7.0 0.0 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|327311446|ref|YP_004338343.1| - 0.017 15.4 0.1 0.048 13.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.10 gi|327311446|ref|YP_004338343.1| - 0.029 13.8 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_16 PF13191.6 gi|327311446|ref|YP_004338343.1| - 0.033 14.6 0.0 0.06 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain GTP_EFTU PF00009.27 gi|327311446|ref|YP_004338343.1| - 0.037 13.5 0.0 9.5 5.7 0.0 2.7 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|327311446|ref|YP_004338343.1| - 0.049 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Ras family Roc PF08477.13 gi|327311446|ref|YP_004338343.1| - 0.091 13.0 0.0 0.22 11.7 0.0 1.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase NTPase_1 PF03266.15 gi|327311446|ref|YP_004338343.1| - 0.18 11.7 2.0 1.1 9.1 0.1 2.6 2 1 1 3 3 3 0 NTPase RsgA_GTPase PF03193.16 gi|327311446|ref|YP_004338343.1| - 0.19 11.6 0.0 0.63 9.9 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase TFIIE_alpha PF02002.17 gi|327311447|ref|YP_004338344.1| - 2.3e-06 27.4 0.3 2.3e-06 27.4 0.3 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit Phage_rep_org_N PF09681.10 gi|327311447|ref|YP_004338344.1| - 0.026 14.5 1.3 0.03 14.2 0.2 1.7 2 1 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) PhnA_Zn_Ribbon PF08274.12 gi|327311447|ref|YP_004338344.1| - 0.04 13.9 0.7 0.36 10.8 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ADK_lid PF05191.14 gi|327311447|ref|YP_004338344.1| - 0.041 13.9 1.5 0.074 13.1 1.5 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid zinc_ribbon_4 PF13717.6 gi|327311447|ref|YP_004338344.1| - 0.044 13.7 2.1 0.15 12.0 2.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain PRTase_3 PF15610.6 gi|327311447|ref|YP_004338344.1| - 0.081 12.1 0.1 0.13 11.5 0.0 1.4 1 1 0 1 1 1 0 PRTase ComF-like TF_Zn_Ribbon PF08271.12 gi|327311447|ref|YP_004338344.1| - 0.085 12.4 3.6 0.63 9.6 3.6 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding HTH_11 PF08279.12 gi|327311447|ref|YP_004338344.1| - 0.085 12.8 0.9 0.16 11.9 0.1 1.9 2 0 0 2 2 2 0 HTH domain HypA PF01155.19 gi|327311447|ref|YP_004338344.1| - 0.12 12.4 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Di19 PF05605.12 gi|327311447|ref|YP_004338344.1| - 0.23 11.8 1.6 8 6.9 0.1 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn-C2H2_12 PF18112.1 gi|327311447|ref|YP_004338344.1| - 0.26 11.8 0.9 7.9 7.0 0.1 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-RING_4 PF14570.6 gi|327311447|ref|YP_004338344.1| - 1.4 8.7 5.2 5.4 6.9 1.2 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain Sgf11 PF08209.11 gi|327311447|ref|YP_004338344.1| - 1.9 8.1 4.4 0.97 9.1 0.7 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) PAC2 PF09754.9 gi|327311448|ref|YP_004338345.1| - 5.6e-33 114.8 0.0 6.7e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 PAC2 family TGT PF01702.18 gi|327311449|ref|YP_004338346.1| - 1.1e-59 202.4 0.0 1.5e-59 202.0 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|327311449|ref|YP_004338346.1| - 1.9e-10 40.8 0.5 3.7e-10 39.9 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) Lsm_C PF14894.6 gi|327311450|ref|YP_004338347.1| - 3.7e-24 84.3 0.7 6e-24 83.6 0.7 1.3 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|327311450|ref|YP_004338347.1| - 2.3e-08 33.6 0.2 3.6e-08 33.0 0.0 1.5 2 0 0 2 2 2 1 LSM domain SM-ATX PF14438.6 gi|327311450|ref|YP_004338347.1| - 6.6e-07 29.4 0.1 9.6e-07 28.9 0.1 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain LSM14 PF12701.7 gi|327311450|ref|YP_004338347.1| - 0.012 15.7 0.1 0.038 14.1 0.1 1.9 1 1 0 1 1 1 0 Scd6-like Sm domain DUF150_C PF17384.2 gi|327311450|ref|YP_004338347.1| - 0.013 15.6 0.3 3.5 7.8 0.1 2.2 1 1 0 2 2 2 0 RimP C-terminal SH3 domain RNA_pol_RpbG PF16992.5 gi|327311451|ref|YP_004338348.1| - 0.00011 22.2 0.6 0.00012 22.1 0.6 1.1 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|327311451|ref|YP_004338348.1| - 0.019 15.1 0.0 0.024 14.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb8 DUF4138 PF13595.6 gi|327311451|ref|YP_004338348.1| - 0.019 14.2 0.4 0.022 14.0 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4138) TFIIB PF00382.19 gi|327311452|ref|YP_004338349.1| - 0.0023 18.0 0.0 0.0064 16.5 0.0 1.7 1 1 1 2 2 2 2 Transcription factor TFIIB repeat DUF4020 PF13212.6 gi|327311452|ref|YP_004338349.1| - 0.016 15.0 1.1 0.18 11.6 0.7 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4020) T2SSE PF00437.20 gi|327311453|ref|YP_004338350.1| - 1.2e-14 54.1 0.0 1.9e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|327311453|ref|YP_004338350.1| - 0.00017 21.8 1.4 0.0011 19.2 0.0 2.7 2 2 2 4 4 3 1 AAA domain Bac_DnaA PF00308.18 gi|327311453|ref|YP_004338350.1| - 0.0033 17.3 0.0 0.0079 16.1 0.0 1.6 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_21 PF13304.6 gi|327311453|ref|YP_004338350.1| - 0.0041 17.0 0.0 0.01 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system NACHT PF05729.12 gi|327311453|ref|YP_004338350.1| - 0.0045 16.9 0.0 0.0078 16.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|327311453|ref|YP_004338350.1| - 0.0074 16.7 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|327311453|ref|YP_004338350.1| - 0.0079 16.7 0.0 0.016 15.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|327311453|ref|YP_004338350.1| - 0.0083 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_23 PF13476.6 gi|327311453|ref|YP_004338350.1| - 0.01 16.4 0.2 0.16 12.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|327311453|ref|YP_004338350.1| - 0.01 15.5 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|327311453|ref|YP_004338350.1| - 0.014 15.8 0.3 0.044 14.2 0.0 2.1 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|327311453|ref|YP_004338350.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|327311453|ref|YP_004338350.1| - 0.022 14.7 0.1 0.19 11.6 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|327311453|ref|YP_004338350.1| - 0.026 14.2 0.0 0.042 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|327311453|ref|YP_004338350.1| - 0.031 13.6 0.0 0.068 12.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.6 gi|327311453|ref|YP_004338350.1| - 0.039 14.3 0.0 0.1 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|327311453|ref|YP_004338350.1| - 0.04 13.7 0.0 0.088 12.6 0.0 1.7 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.27 gi|327311453|ref|YP_004338350.1| - 0.048 14.2 0.0 0.1 13.1 0.0 1.7 2 0 0 2 2 1 0 ABC transporter RuvB_N PF05496.12 gi|327311453|ref|YP_004338350.1| - 0.05 13.3 0.0 0.23 11.2 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Viral_helicase1 PF01443.18 gi|327311453|ref|YP_004338350.1| - 0.05 13.3 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_33 PF13671.6 gi|327311453|ref|YP_004338350.1| - 0.057 13.6 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|327311453|ref|YP_004338350.1| - 0.058 12.8 0.0 0.097 12.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 gi|327311453|ref|YP_004338350.1| - 0.094 12.5 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.6 gi|327311453|ref|YP_004338350.1| - 0.096 12.7 3.9 0.11 12.5 0.0 2.6 2 1 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|327311453|ref|YP_004338350.1| - 0.098 12.4 0.0 0.29 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|327311453|ref|YP_004338350.1| - 0.11 12.2 0.3 2.1 8.1 0.0 2.7 2 1 1 3 3 3 0 DEAD/DEAH box helicase AAA_28 PF13521.6 gi|327311453|ref|YP_004338350.1| - 0.15 12.3 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2207 PF09972.9 gi|327311454|ref|YP_004338351.1| - 0.0002 20.3 6.1 0.0002 20.3 6.1 1.9 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|327311454|ref|YP_004338351.1| - 0.87 9.6 8.3 0.4 10.7 1.0 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Cpn60_TCP1 PF00118.24 gi|327311455|ref|YP_004338352.1| - 3.8e-177 589.8 9.4 4.3e-177 589.6 9.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|327311455|ref|YP_004338352.1| - 8.9e-05 22.5 2.0 0.13 12.2 1.0 2.4 2 0 0 2 2 2 2 DAK2 domain Ribosomal_S17e PF00833.18 gi|327311456|ref|YP_004338353.1| - 4.7e-15 55.6 0.3 5.4e-15 55.4 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 HhH-GPD PF00730.25 gi|327311456|ref|YP_004338353.1| - 0.028 14.9 0.2 0.031 14.7 0.2 1.0 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein FKBP26_C PF18046.1 gi|327311457|ref|YP_004338354.1| - 8.3e-14 51.4 0.2 4.5e-13 49.1 0.1 2.1 2 1 0 2 2 2 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|327311457|ref|YP_004338354.1| - 1.3e-07 31.8 0.0 3e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase Proteasome PF00227.26 gi|327311458|ref|YP_004338355.1| - 2.1e-51 174.1 0.0 2.4e-51 173.9 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit Beta-Casp PF10996.8 gi|327311459|ref|YP_004338356.1| - 5.7e-24 84.5 0.0 1.4e-23 83.3 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|327311459|ref|YP_004338356.1| - 1.5e-19 70.2 0.1 3.2e-19 69.1 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|327311459|ref|YP_004338356.1| - 4.4e-15 55.4 0.0 1.3e-14 53.9 0.0 1.9 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain KH_7 PF17214.3 gi|327311459|ref|YP_004338356.1| - 1.2e-14 54.1 0.2 4.4e-14 52.2 0.2 2.1 1 0 0 1 1 1 1 KH domain Lactamase_B PF00753.27 gi|327311459|ref|YP_004338356.1| - 3.6e-12 46.7 0.1 1.6e-11 44.6 0.1 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|327311459|ref|YP_004338356.1| - 2.3e-09 37.1 0.0 8.6e-09 35.2 0.0 2.0 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|327311459|ref|YP_004338356.1| - 0.0061 16.5 0.1 0.22 11.4 0.0 2.5 2 0 0 2 2 2 1 Beta-lactamase superfamily domain LSM PF01423.22 gi|327311460|ref|YP_004338357.1| - 2e-21 75.4 0.4 2.3e-21 75.3 0.4 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|327311460|ref|YP_004338357.1| - 3e-05 24.1 0.0 3.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|327311460|ref|YP_004338357.1| - 0.001 18.6 0.1 0.0013 18.4 0.1 1.2 1 0 0 1 1 1 1 Hfq protein TFIIA_gamma_N PF02268.16 gi|327311460|ref|YP_004338357.1| - 0.14 12.2 0.1 18 5.5 0.0 2.2 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain Ribosomal_L37e PF01907.19 gi|327311461|ref|YP_004338358.1| - 2.6e-18 65.9 12.2 2.8e-18 65.8 12.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|327311461|ref|YP_004338358.1| - 0.013 15.6 1.8 0.016 15.2 1.8 1.2 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|327311461|ref|YP_004338358.1| - 0.014 15.6 0.9 0.016 15.4 0.9 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DUF2752 PF10825.8 gi|327311461|ref|YP_004338358.1| - 0.031 14.3 1.5 5.9 7.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) GcpE PF04551.14 gi|327311461|ref|YP_004338358.1| - 0.13 11.3 0.7 0.13 11.3 0.7 1.1 1 0 0 1 1 1 0 GcpE protein HypA PF01155.19 gi|327311461|ref|YP_004338358.1| - 0.29 11.2 1.5 0.72 9.9 1.7 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|327311461|ref|YP_004338358.1| - 0.3 10.6 6.8 4.3 6.9 6.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|327311461|ref|YP_004338358.1| - 0.36 10.8 7.4 0.69 9.9 7.4 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|327311461|ref|YP_004338358.1| - 0.8 9.7 5.4 8.1 6.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|327311461|ref|YP_004338358.1| - 1.2 8.9 6.8 16 5.4 7.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DNA_pol_B PF00136.21 gi|327311462|ref|YP_004338359.1| - 8.4e-74 248.9 0.1 1.2e-73 248.5 0.1 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|327311462|ref|YP_004338359.1| - 9.4e-33 113.7 0.0 2.4e-30 105.9 0.0 2.9 2 2 1 3 3 3 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|327311462|ref|YP_004338359.1| - 2.8e-06 27.2 0.0 5.9e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|327311462|ref|YP_004338359.1| - 1.1e-05 25.5 0.0 2.7e-05 24.2 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily HHH_4 PF14490.6 gi|327311462|ref|YP_004338359.1| - 0.038 14.0 0.0 0.78 9.8 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain Toprim_4 PF13662.6 gi|327311463|ref|YP_004338360.1| - 1.3e-07 31.9 0.3 3.8e-07 30.5 0.3 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|327311463|ref|YP_004338360.1| - 0.00071 20.0 0.1 0.0025 18.2 0.0 2.1 2 1 0 2 2 2 1 Toprim-like PBSX_XtrA PF17356.2 gi|327311463|ref|YP_004338360.1| - 0.021 14.7 0.2 0.19 11.7 0.1 2.6 3 0 0 3 3 3 0 Phage-like element PBSX protein XtrA Toprim PF01751.22 gi|327311463|ref|YP_004338360.1| - 0.064 13.5 1.4 0.46 10.7 0.2 2.7 2 1 0 2 2 2 0 Toprim domain HEPPP_synt_1 PF07307.11 gi|327311463|ref|YP_004338360.1| - 0.075 12.6 0.1 0.075 12.6 0.1 1.7 2 0 0 2 2 2 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 Peptidase_M24 PF00557.24 gi|327311464|ref|YP_004338361.1| - 4.7e-39 134.2 0.0 5.6e-39 134.0 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF5068 PF16781.5 gi|327311464|ref|YP_004338361.1| - 0.0093 15.7 2.0 0.35 10.6 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF5068) ApbE PF02424.15 gi|327311464|ref|YP_004338361.1| - 0.028 14.0 0.1 0.047 13.2 0.1 1.4 1 0 0 1 1 1 0 ApbE family FHA PF00498.26 gi|327311465|ref|YP_004338362.1| - 1.3e-14 54.3 0.0 1.7e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|327311465|ref|YP_004338362.1| - 4.6e-12 46.1 0.0 5.6e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain zf-RanBP PF00641.18 gi|327311465|ref|YP_004338362.1| - 2.7e-05 23.4 0.7 3.8e-05 22.9 0.7 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|327311465|ref|YP_004338362.1| - 3.7e-05 23.3 2.1 6.1e-05 22.6 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|327311465|ref|YP_004338362.1| - 0.0024 17.8 0.3 0.0034 17.4 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Vps36-NZF-N PF16988.5 gi|327311465|ref|YP_004338362.1| - 0.0039 16.5 1.3 0.081 12.3 1.6 2.1 1 1 0 1 1 1 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-ribbon_3 PF13248.6 gi|327311465|ref|YP_004338362.1| - 0.0049 16.2 3.9 0.0081 15.5 3.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-Sec23_Sec24 PF04810.15 gi|327311465|ref|YP_004338362.1| - 0.091 12.8 1.2 0.32 11.1 0.1 2.0 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-tcix PF14952.6 gi|327311465|ref|YP_004338362.1| - 0.29 10.8 5.1 0.67 9.6 4.0 2.0 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding RecR PF02132.15 gi|327311465|ref|YP_004338362.1| - 0.4 10.3 2.8 0.74 9.4 2.8 1.4 1 0 0 1 1 1 0 RecR protein Pkinase PF00069.25 gi|327311466|ref|YP_004338363.1| - 1e-40 139.8 0.0 2.2e-40 138.7 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|327311466|ref|YP_004338363.1| - 3.3e-24 85.6 0.0 5.4e-24 84.9 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Pkinase_fungal PF17667.1 gi|327311466|ref|YP_004338363.1| - 0.038 12.8 0.2 0.058 12.2 0.2 1.2 1 0 0 1 1 1 0 Fungal protein kinase Kinase-like PF14531.6 gi|327311466|ref|YP_004338363.1| - 0.055 12.8 0.0 0.074 12.4 0.0 1.2 1 0 0 1 1 1 0 Kinase-like Radical_SAM PF04055.21 gi|327311467|ref|YP_004338364.1| - 2.6e-28 99.5 0.0 4e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|327311467|ref|YP_004338364.1| - 5.6e-21 74.8 0.0 8.8e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|327311467|ref|YP_004338364.1| - 1.4e-05 25.3 0.0 2.6e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|327311467|ref|YP_004338364.1| - 0.00013 22.1 0.0 0.00026 21.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HTH_1 PF00126.27 gi|327311468|ref|YP_004338365.1| - 2.6e-14 52.9 0.0 3.8e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.6 gi|327311468|ref|YP_004338365.1| - 0.00026 20.9 0.1 0.00054 19.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.6 gi|327311468|ref|YP_004338365.1| - 0.0021 18.1 0.0 0.0039 17.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix TBCA PF02970.16 gi|327311468|ref|YP_004338365.1| - 0.021 15.2 0.1 0.033 14.5 0.1 1.4 1 0 0 1 1 1 0 Tubulin binding cofactor A DUF1539 PF07560.11 gi|327311468|ref|YP_004338365.1| - 0.026 14.6 0.0 0.16 12.0 0.1 1.9 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1539) DUF2089 PF09862.9 gi|327311468|ref|YP_004338365.1| - 0.026 14.5 0.1 2 8.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) HTH_28 PF13518.6 gi|327311468|ref|YP_004338365.1| - 0.058 13.5 0.0 0.17 12.1 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain ELM2 PF01448.24 gi|327311468|ref|YP_004338365.1| - 0.1 13.4 0.1 0.21 12.4 0.1 1.4 1 0 0 1 1 1 0 ELM2 domain HTH_23 PF13384.6 gi|327311468|ref|YP_004338365.1| - 0.11 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain MoaC PF01967.21 gi|327311469|ref|YP_004338366.1| - 3.8e-22 78.8 0.1 2e-10 40.9 0.0 3.2 2 1 1 3 3 3 3 MoaC family Phage_holin_8 PF16931.5 gi|327311469|ref|YP_004338366.1| - 0.71 9.9 4.4 0.31 11.0 0.5 2.2 2 0 0 2 2 2 0 Putative phage holin dCMP_cyt_deam_1 PF00383.23 gi|327311470|ref|YP_004338367.1| - 4.8e-19 68.1 0.3 5.7e-19 67.9 0.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|327311470|ref|YP_004338367.1| - 4.4e-12 46.3 0.4 7.4e-12 45.6 0.4 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|327311470|ref|YP_004338367.1| - 3.7e-05 23.4 0.5 0.012 15.2 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases adh_short_C2 PF13561.6 gi|327311472|ref|YP_004338369.1| - 6.5e-55 186.2 0.0 8.7e-55 185.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|327311472|ref|YP_004338369.1| - 5e-44 150.1 0.0 6e-44 149.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|327311472|ref|YP_004338369.1| - 7.8e-10 38.9 0.0 1.2e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|327311472|ref|YP_004338369.1| - 0.00071 19.8 0.0 0.0022 18.2 0.0 1.7 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|327311472|ref|YP_004338369.1| - 0.17 11.7 0.1 0.28 11.0 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.13 gi|327311472|ref|YP_004338369.1| - 0.18 11.4 0.4 0.45 10.0 0.6 1.5 2 0 0 2 2 2 0 NmrA-like family SHMT PF00464.19 gi|327311473|ref|YP_004338370.1| - 1.4e-69 234.7 0.0 1.8e-69 234.3 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|327311473|ref|YP_004338370.1| - 0.00013 21.3 0.0 0.00031 20.0 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|327311473|ref|YP_004338370.1| - 0.00031 20.2 0.0 0.00068 19.0 0.0 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family ADH_zinc_N PF00107.26 gi|327311473|ref|YP_004338370.1| - 0.032 14.2 0.1 0.11 12.5 0.1 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase CheD PF03975.13 gi|327311473|ref|YP_004338370.1| - 0.15 12.1 0.0 0.35 11.0 0.0 1.7 1 0 0 1 1 1 0 CheD chemotactic sensory transduction ParA PF10609.9 gi|327311474|ref|YP_004338371.1| - 4e-84 281.9 0.2 4.8e-84 281.7 0.2 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|327311474|ref|YP_004338371.1| - 7.2e-09 35.8 0.0 5.2e-08 33.0 0.0 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|327311474|ref|YP_004338371.1| - 0.0003 20.1 2.5 0.00049 19.4 1.7 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|327311474|ref|YP_004338371.1| - 0.0055 15.7 0.6 0.011 14.7 0.6 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_31 PF13614.6 gi|327311474|ref|YP_004338371.1| - 0.011 15.7 0.7 0.024 14.5 0.3 1.7 2 0 0 2 2 2 0 AAA domain Fer4_NifH PF00142.18 gi|327311474|ref|YP_004338371.1| - 0.039 13.4 0.2 0.23 10.9 0.2 2.0 2 1 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|327311474|ref|YP_004338371.1| - 0.05 13.4 1.1 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|327311474|ref|YP_004338371.1| - 0.075 12.9 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MipZ PF09140.11 gi|327311474|ref|YP_004338371.1| - 0.084 12.1 0.2 0.15 11.3 0.2 1.4 1 0 0 1 1 1 0 ATPase MipZ Ribosomal_S2 PF00318.20 gi|327311476|ref|YP_004338373.1| - 2.3e-25 89.1 0.0 3.1e-16 59.3 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Cecropin PF00272.19 gi|327311476|ref|YP_004338373.1| - 0.063 13.0 0.2 0.12 12.1 0.2 1.4 1 0 0 1 1 1 0 Cecropin family Memo PF01875.17 gi|327311477|ref|YP_004338374.1| - 1.6e-72 243.9 0.0 1.8e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|327311477|ref|YP_004338374.1| - 5.2e-05 22.5 0.0 0.0063 15.6 0.0 2.1 2 0 0 2 2 2 2 Catalytic LigB subunit of aromatic ring-opening dioxygenase FMN_dh PF01070.18 gi|327311478|ref|YP_004338375.1| - 5.3e-26 91.5 1.0 2.9e-15 56.1 0.7 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|327311478|ref|YP_004338375.1| - 3.4e-07 29.6 1.9 0.00022 20.3 0.2 2.9 4 0 0 4 4 4 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|327311478|ref|YP_004338375.1| - 0.00056 19.1 2.3 0.11 11.6 2.3 2.7 2 1 0 2 2 2 2 Conserved region in glutamate synthase DUF438 PF04282.13 gi|327311479|ref|YP_004338376.1| - 0.067 13.1 0.0 0.093 12.7 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF438) Ribosomal_L2_C PF03947.18 gi|327311480|ref|YP_004338377.1| - 8.2e-41 139.1 1.3 1.2e-40 138.6 1.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|327311480|ref|YP_004338377.1| - 1.7e-09 37.5 0.0 5.2e-09 35.9 0.0 1.9 1 1 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Sen15 PF09631.10 gi|327311481|ref|YP_004338378.1| - 0.02 15.2 0.2 0.073 13.4 0.1 1.8 1 1 1 2 2 2 0 Sen15 protein FlgO PF17680.1 gi|327311481|ref|YP_004338378.1| - 0.08 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 FlgO protein PK PF00224.21 gi|327311483|ref|YP_004338380.1| - 8.9e-72 241.9 0.1 1.2e-71 241.5 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|327311483|ref|YP_004338380.1| - 1.3e-13 51.1 0.0 5e-13 49.3 0.0 2.0 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|327311483|ref|YP_004338380.1| - 9e-05 21.7 0.3 0.00017 20.8 0.3 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PaREP1 PF05942.11 gi|327311484|ref|YP_004338381.1| - 1.2e-23 83.3 1.4 1.4e-23 83.0 1.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family T3SS_needle_E PF08988.10 gi|327311484|ref|YP_004338381.1| - 0.27 11.4 1.6 0.63 10.2 0.3 2.2 1 1 1 2 2 2 0 Type III secretion system, cytoplasmic E component of needle Asp_protease_2 PF13650.6 gi|327311485|ref|YP_004338382.1| - 1.3e-05 25.8 0.1 1.4e-05 25.6 0.1 1.1 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|327311485|ref|YP_004338382.1| - 2.1e-05 25.0 0.0 2.3e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|327311485|ref|YP_004338382.1| - 0.035 14.4 0.0 0.036 14.4 0.0 1.1 1 0 0 1 1 1 0 Retroviral aspartyl protease CRM1_repeat_3 PF18787.1 gi|327311485|ref|YP_004338382.1| - 0.21 11.7 0.0 0.3 11.2 0.0 1.2 1 0 0 1 1 1 0 CRM1 / Exportin repeat 3 tRNA-synt_1e PF01406.19 gi|327311486|ref|YP_004338383.1| - 2.1e-110 368.8 0.0 3.4e-110 368.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|327311486|ref|YP_004338383.1| - 5.7e-09 34.8 0.0 8.5e-09 34.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|327311486|ref|YP_004338383.1| - 5.2e-08 32.1 0.1 1.1e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|327311486|ref|YP_004338383.1| - 1.2e-07 32.1 0.2 5.6e-07 29.9 0.0 2.1 1 1 1 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|327311486|ref|YP_004338383.1| - 2.4e-07 30.0 0.0 0.00017 20.6 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (K) KfrA_N PF11740.8 gi|327311486|ref|YP_004338383.1| - 0.046 14.4 0.5 0.11 13.2 0.5 1.6 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term DUF3235 PF11574.8 gi|327311486|ref|YP_004338383.1| - 0.12 13.2 0.4 3.4 8.6 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3235) Enolase_C PF00113.22 gi|327311487|ref|YP_004338384.1| - 1.1e-52 179.2 0.0 1.4e-52 178.8 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|327311487|ref|YP_004338384.1| - 8.8e-31 106.8 0.0 1.5e-30 106.0 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|327311487|ref|YP_004338384.1| - 1.1e-10 41.5 0.8 1.4e-10 41.1 0.1 1.6 2 0 0 2 2 2 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|327311487|ref|YP_004338384.1| - 0.011 14.9 0.0 0.021 14.0 0.0 1.5 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus DUF2293 PF10056.9 gi|327311487|ref|YP_004338384.1| - 0.029 14.6 1.0 0.18 12.1 0.5 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2293) CBM_4_9 PF02018.17 gi|327311488|ref|YP_004338385.1| - 0.043 14.1 3.1 5.8 7.2 0.0 4.3 4 2 0 4 4 4 0 Carbohydrate binding domain Fn3-like PF14310.6 gi|327311488|ref|YP_004338385.1| - 0.055 13.6 0.2 12 6.1 0.0 3.7 5 0 0 5 5 5 0 Fibronectin type III-like domain AMMECR1 PF01871.17 gi|327311490|ref|YP_004338387.1| - 2.1e-06 27.4 0.0 2.6e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 DUF3809 PF12723.7 gi|327311490|ref|YP_004338387.1| - 0.041 14.2 0.0 0.069 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3809) Cytochrom_D1 PF02239.16 gi|327311490|ref|YP_004338387.1| - 0.17 10.4 0.0 0.21 10.0 0.0 1.1 1 0 0 1 1 1 0 Cytochrome D1 heme domain DUF1525 PF07511.11 gi|327311491|ref|YP_004338388.1| - 3.1e-05 24.1 0.4 9.2e-05 22.6 0.4 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1525) Thioredoxin_3 PF13192.6 gi|327311491|ref|YP_004338388.1| - 0.042 13.9 0.1 0.12 12.4 0.0 1.9 2 1 0 2 2 2 0 Thioredoxin domain CSS-motif PF12792.7 gi|327311491|ref|YP_004338388.1| - 0.12 11.9 0.1 0.28 10.6 0.1 1.7 1 0 0 1 1 1 0 CSS motif domain associated with EAL TPR_21 PF09976.9 gi|327311491|ref|YP_004338388.1| - 0.14 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat-like domain ACCA PF03255.14 gi|327311491|ref|YP_004338388.1| - 0.21 11.5 0.4 0.33 10.8 0.4 1.3 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CYTH PF01928.21 gi|327311492|ref|YP_004338389.1| - 4.4e-31 108.2 3.0 5.1e-31 108.0 3.0 1.0 1 0 0 1 1 1 1 CYTH domain Ribosomal_L12 PF00542.19 gi|327311492|ref|YP_004338389.1| - 0.038 14.3 0.4 1.7 9.1 0.1 2.4 2 1 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain DNA_ligase_A_M PF01068.21 gi|327311493|ref|YP_004338390.1| - 3.5e-63 212.9 0.0 5.7e-63 212.2 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|327311493|ref|YP_004338390.1| - 2.8e-39 135.2 0.1 4.6e-39 134.5 0.1 1.4 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|327311493|ref|YP_004338390.1| - 2.1e-22 79.6 0.0 5.6e-22 78.2 0.0 1.8 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|327311493|ref|YP_004338390.1| - 9.9e-06 25.9 0.1 1.7e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|327311493|ref|YP_004338390.1| - 0.061 13.4 0.4 0.21 11.6 0.0 2.1 3 0 0 3 3 3 0 DNA ligase OB-like domain Strep_SA_rep PF06696.11 gi|327311494|ref|YP_004338391.1| - 0.092 12.8 1.2 0.092 12.8 1.2 2.4 2 0 0 2 2 2 0 Streptococcal surface antigen repeat PfkB PF00294.24 gi|327311495|ref|YP_004338392.1| - 1.2e-56 192.2 2.2 1.5e-56 192.0 2.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|327311495|ref|YP_004338392.1| - 1.9e-05 24.2 0.1 2.8e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase NTP_transferase PF00483.23 gi|327311497|ref|YP_004338394.1| - 5.1e-26 91.8 0.0 6.2e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|327311497|ref|YP_004338394.1| - 1.6e-12 48.1 0.7 1.8e-12 47.9 0.7 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CdvA PF18822.1 gi|327311498|ref|YP_004338395.1| - 5e-05 23.1 10.7 0.0034 17.2 0.1 2.5 2 1 0 2 2 2 2 CdvA-like coiled-coil domain CorA PF01544.18 gi|327311498|ref|YP_004338395.1| - 0.0031 16.9 4.7 0.004 16.5 4.7 1.2 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein SHOCT PF09851.9 gi|327311498|ref|YP_004338395.1| - 0.01 15.5 5.7 0.01 15.5 5.7 2.7 3 0 0 3 3 3 0 Short C-terminal domain NPV_P10 PF05531.12 gi|327311498|ref|YP_004338395.1| - 0.025 15.1 1.3 0.088 13.3 0.0 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF4197 PF13852.6 gi|327311498|ref|YP_004338395.1| - 0.029 14.0 0.2 0.062 13.0 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4197) DUF3287 PF11690.8 gi|327311498|ref|YP_004338395.1| - 0.062 13.0 2.3 5.3 6.8 0.3 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF3287) Baculo_PEP_C PF04513.12 gi|327311498|ref|YP_004338395.1| - 0.07 13.2 0.3 3.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus RhoGAP PF00620.27 gi|327311498|ref|YP_004338395.1| - 0.092 12.6 0.6 0.15 11.9 0.6 1.4 1 0 0 1 1 1 0 RhoGAP domain DUF948 PF06103.11 gi|327311498|ref|YP_004338395.1| - 0.13 12.5 0.3 0.4 11.0 0.1 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1798 PF08807.10 gi|327311498|ref|YP_004338395.1| - 0.31 11.2 3.2 0.23 11.6 1.2 1.8 2 0 0 2 2 2 0 Bacterial domain of unknown function (DUF1798) GvpG PF05120.12 gi|327311498|ref|YP_004338395.1| - 0.36 10.9 0.1 0.36 10.9 0.1 3.6 4 0 0 4 4 4 0 Gas vesicle protein G DASH_Spc19 PF08287.11 gi|327311498|ref|YP_004338395.1| - 0.36 10.7 8.9 0.68 9.8 0.3 2.7 2 1 0 2 2 2 0 Spc19 POX PF07526.11 gi|327311498|ref|YP_004338395.1| - 0.69 10.5 4.1 3.2 8.3 4.1 2.0 1 1 0 1 1 1 0 Associated with HOX TcdB_N PF12918.7 gi|327311498|ref|YP_004338395.1| - 0.97 9.8 5.9 28 5.1 0.1 3.5 4 0 0 4 4 3 0 TcdB toxin N-terminal helical domain CCDC-167 PF15188.6 gi|327311498|ref|YP_004338395.1| - 0.99 9.8 11.8 3.3 8.1 3.6 2.9 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 Syntaxin-6_N PF09177.11 gi|327311498|ref|YP_004338395.1| - 1.3 9.6 5.6 8 7.1 5.6 2.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Fib_alpha PF08702.10 gi|327311498|ref|YP_004338395.1| - 1.4 9.1 4.8 2.4 8.3 0.2 2.5 2 2 0 2 2 2 0 Fibrinogen alpha/beta chain family Tropomyosin PF00261.20 gi|327311499|ref|YP_004338396.1| - 0.0064 15.9 8.3 0.0064 15.9 8.3 1.4 2 0 0 2 2 2 1 Tropomyosin DUF1910 PF08928.10 gi|327311499|ref|YP_004338396.1| - 0.02 14.9 2.4 0.043 13.8 1.3 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF1910) CREPT PF16566.5 gi|327311499|ref|YP_004338396.1| - 0.031 14.5 2.6 0.92 9.7 0.0 2.8 2 1 1 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour BST2 PF16716.5 gi|327311499|ref|YP_004338396.1| - 0.053 14.1 1.8 0.73 10.5 0.1 2.4 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 CCDC-167 PF15188.6 gi|327311499|ref|YP_004338396.1| - 0.054 13.8 0.9 0.054 13.8 0.9 2.9 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 Spc7 PF08317.11 gi|327311499|ref|YP_004338396.1| - 0.072 12.0 6.6 0.2 10.5 4.9 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein Fmp27_WPPW PF10359.9 gi|327311499|ref|YP_004338396.1| - 0.12 11.3 0.8 0.14 10.9 0.8 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain APG6_N PF17675.1 gi|327311499|ref|YP_004338396.1| - 0.16 12.5 8.1 1.2 9.6 7.9 2.1 1 1 0 1 1 1 0 Apg6 coiled-coil region CdvA PF18822.1 gi|327311499|ref|YP_004338396.1| - 0.19 11.6 7.9 0.89 9.4 4.6 2.7 1 1 1 2 2 2 0 CdvA-like coiled-coil domain DUF2730 PF10805.8 gi|327311499|ref|YP_004338396.1| - 0.24 11.5 3.6 1.8 8.7 0.4 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) DUF1640 PF07798.11 gi|327311499|ref|YP_004338396.1| - 0.26 11.3 4.5 0.45 10.5 4.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) bZIP_2 PF07716.15 gi|327311499|ref|YP_004338396.1| - 0.73 10.0 7.0 4 7.6 1.2 2.7 2 0 0 2 2 2 0 Basic region leucine zipper DivIC PF04977.15 gi|327311499|ref|YP_004338396.1| - 2.3 8.0 9.0 3.6 7.4 3.3 2.8 2 1 0 3 3 3 0 Septum formation initiator TSKS PF15358.6 gi|327311499|ref|YP_004338396.1| - 5.4 5.3 9.2 7.7 4.8 0.6 2.1 2 0 0 2 2 2 0 Testis-specific serine kinase substrate DMRL_synthase PF00885.19 gi|327311500|ref|YP_004338397.1| - 1.7e-34 118.6 2.3 1.9e-34 118.5 2.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PAC2 PF09754.9 gi|327311500|ref|YP_004338397.1| - 0.058 13.4 0.1 0.078 13.0 0.1 1.2 1 0 0 1 1 1 0 PAC2 family MarR_2 PF12802.7 gi|327311501|ref|YP_004338398.1| - 0.00062 19.6 0.0 0.00079 19.3 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|327311501|ref|YP_004338398.1| - 0.00081 19.2 0.2 0.0011 18.8 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|327311501|ref|YP_004338398.1| - 0.00096 19.0 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|327311501|ref|YP_004338398.1| - 0.011 15.4 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family AbiEi_4 PF13338.6 gi|327311501|ref|YP_004338398.1| - 0.011 15.8 0.0 0.013 15.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin Rrf2 PF02082.20 gi|327311501|ref|YP_004338398.1| - 0.018 15.4 0.0 0.021 15.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|327311501|ref|YP_004338398.1| - 0.056 13.2 0.0 0.065 13.0 0.0 1.1 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|327311501|ref|YP_004338398.1| - 0.063 13.3 0.0 0.068 13.2 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FaeA PF04703.12 gi|327311501|ref|YP_004338398.1| - 0.099 13.0 0.0 0.13 12.7 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HemN_C PF06969.16 gi|327311501|ref|YP_004338398.1| - 0.16 12.1 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 HemN C-terminal domain polyprenyl_synt PF00348.17 gi|327311502|ref|YP_004338399.1| - 6.6e-32 110.6 0.0 9.7e-32 110.0 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase K-box PF01486.17 gi|327311502|ref|YP_004338399.1| - 0.085 13.0 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 K-box region PaREP1 PF05942.11 gi|327311503|ref|YP_004338400.1| - 0.044 13.7 0.2 0.053 13.5 0.2 1.1 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family GFO_IDH_MocA PF01408.22 gi|327311505|ref|YP_004338402.1| - 1.2e-15 58.4 0.0 1.7e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|327311505|ref|YP_004338402.1| - 0.0032 17.4 0.0 0.0083 16.1 0.0 1.6 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|327311505|ref|YP_004338402.1| - 0.0096 16.6 0.0 0.019 15.7 0.0 1.4 1 0 0 1 1 1 1 CoA binding domain Semialdhyde_dh PF01118.24 gi|327311505|ref|YP_004338402.1| - 0.026 15.0 0.1 0.21 12.0 0.0 2.4 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain LpxK PF02606.14 gi|327311506|ref|YP_004338403.1| - 0.14 11.2 0.2 0.35 9.9 0.0 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase VIT1 PF01988.19 gi|327311508|ref|YP_004338405.1| - 0.12 12.2 13.5 0.66 9.8 3.0 2.4 1 1 1 2 2 2 0 VIT family Cyt_c_ox_IV PF12270.8 gi|327311508|ref|YP_004338405.1| - 0.44 10.7 4.2 0.44 10.7 1.6 2.1 2 1 0 2 2 2 0 Cytochrome c oxidase subunit IV DUF211 PF02680.14 gi|327311509|ref|YP_004338406.1| - 7.9e-28 96.5 7.0 8.9e-28 96.3 7.0 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 NikR_C PF08753.11 gi|327311509|ref|YP_004338406.1| - 0.0079 16.3 1.3 1.1 9.4 0.4 2.1 2 0 0 2 2 2 2 NikR C terminal nickel binding domain EF1_GNE PF00736.19 gi|327311509|ref|YP_004338406.1| - 0.098 12.8 2.2 0.16 12.2 2.2 1.5 1 1 0 1 1 1 0 EF-1 guanine nucleotide exchange domain TruB_N PF01509.18 gi|327311510|ref|YP_004338407.1| - 4.5e-24 85.5 0.1 1.8e-20 73.8 0.1 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|327311510|ref|YP_004338407.1| - 1e-21 76.8 0.1 2e-21 75.9 0.1 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|327311510|ref|YP_004338407.1| - 1.9e-21 75.8 0.0 4.7e-21 74.5 0.0 1.7 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|327311510|ref|YP_004338407.1| - 2.1e-13 50.1 0.1 5.6e-13 48.7 0.1 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain Ribosomal_L14e PF01929.17 gi|327311511|ref|YP_004338408.1| - 0.00021 21.7 0.2 0.00044 20.7 0.1 1.5 2 0 0 2 2 2 1 Ribosomal protein L14 KOW PF00467.29 gi|327311511|ref|YP_004338408.1| - 0.026 14.5 6.6 0.07 13.1 6.6 1.7 1 0 0 1 1 1 0 KOW motif GlcV_C_terminal PF17847.1 gi|327311511|ref|YP_004338408.1| - 0.054 14.0 0.6 0.088 13.3 0.6 1.4 1 0 0 1 1 1 0 Glucose ABC transporter C-terminal domain CxxCxxCC PF03692.15 gi|327311512|ref|YP_004338409.1| - 5.2e-10 39.9 0.9 7.6e-10 39.4 0.9 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Fer4 PF00037.27 gi|327311513|ref|YP_004338410.1| - 7.4e-07 28.7 11.8 0.00029 20.5 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|327311513|ref|YP_004338410.1| - 0.00035 20.5 15.4 0.01 15.9 4.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|327311513|ref|YP_004338410.1| - 0.0013 18.9 8.5 0.0051 16.9 9.0 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|327311513|ref|YP_004338410.1| - 0.0026 17.8 7.4 0.0056 16.8 7.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|327311513|ref|YP_004338410.1| - 0.0029 17.7 5.8 0.0067 16.5 5.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327311513|ref|YP_004338410.1| - 0.0039 17.7 7.1 0.029 15.0 1.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327311513|ref|YP_004338410.1| - 0.0076 16.3 16.5 0.036 14.2 3.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327311513|ref|YP_004338410.1| - 0.092 13.7 0.8 0.092 13.7 0.8 2.2 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain zf-CSL PF05207.13 gi|327311513|ref|YP_004338410.1| - 1.8 8.3 9.2 3.5 7.4 9.2 1.4 1 0 0 1 1 1 0 CSL zinc finger Fer4_8 PF13183.6 gi|327311513|ref|YP_004338410.1| - 2.2 8.8 11.3 0.72 10.3 2.9 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain DUF99 PF01949.16 gi|327311514|ref|YP_004338411.1| - 4.4e-52 176.2 0.0 5e-52 176.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Ribosomal_S7 PF00177.21 gi|327311516|ref|YP_004338413.1| - 9.3e-42 142.2 0.1 1.1e-41 141.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Rep_fac_C PF08542.11 gi|327311517|ref|YP_004338414.1| - 7.6e-18 64.7 0.1 2e-17 63.4 0.1 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|327311517|ref|YP_004338414.1| - 1.3e-16 61.2 0.0 8.1e-16 58.7 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|327311517|ref|YP_004338414.1| - 8.6e-15 54.9 0.0 3.3e-10 40.0 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|327311517|ref|YP_004338414.1| - 4.7e-09 36.2 0.0 1.1e-08 35.0 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|327311517|ref|YP_004338414.1| - 9.4e-08 32.6 0.3 0.00059 20.2 0.0 3.0 2 1 1 3 3 3 2 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|327311517|ref|YP_004338414.1| - 1e-06 28.9 1.0 2.4e-06 27.8 0.2 2.1 2 0 0 2 2 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|327311517|ref|YP_004338414.1| - 3.3e-06 27.2 0.0 6.9e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327311517|ref|YP_004338414.1| - 7.3e-06 26.3 0.2 0.15 12.3 0.0 2.5 1 1 1 2 2 2 2 AAA domain Rad17 PF03215.15 gi|327311517|ref|YP_004338414.1| - 1.1e-05 25.5 0.0 3.6e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_25 PF13481.6 gi|327311517|ref|YP_004338414.1| - 2.4e-05 24.0 0.1 0.00017 21.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|327311517|ref|YP_004338414.1| - 2.7e-05 24.0 0.0 5.4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|327311517|ref|YP_004338414.1| - 5.8e-05 22.6 0.0 0.0017 17.7 0.0 2.6 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|327311517|ref|YP_004338414.1| - 0.0001 22.1 0.0 0.00023 21.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|327311517|ref|YP_004338414.1| - 0.00011 22.2 0.1 0.00052 20.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|327311517|ref|YP_004338414.1| - 0.00013 22.5 0.0 0.00094 19.7 0.0 2.2 2 1 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|327311517|ref|YP_004338414.1| - 0.00038 20.5 0.0 0.0056 16.7 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|327311517|ref|YP_004338414.1| - 0.00078 18.9 0.1 0.32 10.4 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|327311517|ref|YP_004338414.1| - 0.0012 18.6 0.2 0.0054 16.5 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|327311517|ref|YP_004338414.1| - 0.0021 17.9 0.0 0.011 15.5 0.0 1.7 1 1 1 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|327311517|ref|YP_004338414.1| - 0.0033 17.2 0.0 0.0098 15.6 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein TniB PF05621.11 gi|327311517|ref|YP_004338414.1| - 0.0039 16.6 0.0 0.33 10.3 0.0 2.8 3 0 0 3 3 3 1 Bacterial TniB protein RNA_helicase PF00910.22 gi|327311517|ref|YP_004338414.1| - 0.005 17.2 0.0 0.015 15.7 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_7 PF12775.7 gi|327311517|ref|YP_004338414.1| - 0.0051 16.4 0.0 0.0086 15.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|327311517|ref|YP_004338414.1| - 0.0057 15.9 0.0 0.019 14.2 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain DEAD PF00270.29 gi|327311517|ref|YP_004338414.1| - 0.0073 16.1 0.3 0.12 12.2 0.0 2.2 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_33 PF13671.6 gi|327311517|ref|YP_004338414.1| - 0.0082 16.3 0.0 0.024 14.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|327311517|ref|YP_004338414.1| - 0.015 15.6 0.1 0.1 12.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|327311517|ref|YP_004338414.1| - 0.026 13.6 0.0 0.33 10.0 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein TIP49_C PF17856.1 gi|327311517|ref|YP_004338414.1| - 0.027 14.6 0.2 0.084 13.0 0.2 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain Viral_helicase1 PF01443.18 gi|327311517|ref|YP_004338414.1| - 0.037 13.8 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase FtsK_SpoIIIE PF01580.18 gi|327311517|ref|YP_004338414.1| - 0.038 13.4 0.1 0.58 9.5 0.0 2.7 3 1 1 4 4 4 0 FtsK/SpoIIIE family AAA_28 PF13521.6 gi|327311517|ref|YP_004338414.1| - 0.045 14.0 0.0 0.12 12.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|327311517|ref|YP_004338414.1| - 0.047 12.9 0.0 0.73 9.0 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DNA_pol3_delta PF06144.13 gi|327311517|ref|YP_004338414.1| - 0.067 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit AAA_2 PF07724.14 gi|327311517|ref|YP_004338414.1| - 0.096 12.8 0.0 0.33 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) ATPase_2 PF01637.18 gi|327311517|ref|YP_004338414.1| - 0.11 12.4 0.0 0.2 11.5 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|327311517|ref|YP_004338414.1| - 0.15 12.6 0.0 0.61 10.6 0.0 2.0 2 2 0 2 2 2 0 ABC transporter Parvo_NS1 PF01057.17 gi|327311517|ref|YP_004338414.1| - 0.21 10.7 0.0 0.34 10.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA PF00004.29 gi|327311518|ref|YP_004338415.1| - 1e-15 58.3 0.0 3.9e-15 56.4 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|327311518|ref|YP_004338415.1| - 1.3e-06 28.5 0.1 5.9e-06 26.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|327311518|ref|YP_004338415.1| - 2.2e-06 27.5 0.1 1.3e-05 25.0 0.0 2.2 2 1 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|327311518|ref|YP_004338415.1| - 7.3e-06 26.3 0.8 0.0018 18.6 0.0 3.3 3 1 1 4 4 4 1 AAA domain AAA_assoc_2 PF16193.5 gi|327311518|ref|YP_004338415.1| - 7.5e-06 26.2 0.4 3.2e-05 24.2 0.1 2.2 2 0 0 2 2 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|327311518|ref|YP_004338415.1| - 1.5e-05 25.4 0.1 4.9e-05 23.8 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|327311518|ref|YP_004338415.1| - 2.5e-05 24.3 0.1 0.00013 22.0 0.1 2.1 1 1 0 1 1 1 1 Rad17 P-loop domain Zeta_toxin PF06414.12 gi|327311518|ref|YP_004338415.1| - 3.5e-05 23.2 0.0 6.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin DNA_pol3_delta PF06144.13 gi|327311518|ref|YP_004338415.1| - 3.9e-05 23.5 0.0 0.00053 19.8 0.0 2.5 2 1 0 2 2 2 1 DNA polymerase III, delta subunit RNA_helicase PF00910.22 gi|327311518|ref|YP_004338415.1| - 4.6e-05 23.7 0.0 0.00039 20.8 0.0 2.3 2 0 0 2 2 2 1 RNA helicase Bac_DnaA PF00308.18 gi|327311518|ref|YP_004338415.1| - 7.6e-05 22.7 0.0 0.00036 20.5 0.0 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein TIP49 PF06068.13 gi|327311518|ref|YP_004338415.1| - 9e-05 21.8 0.2 0.00036 19.8 0.0 1.9 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_14 PF13173.6 gi|327311518|ref|YP_004338415.1| - 0.00013 22.0 0.0 0.00058 19.9 0.0 2.1 1 1 1 2 2 2 1 AAA domain NACHT PF05729.12 gi|327311518|ref|YP_004338415.1| - 0.00014 21.8 0.6 0.013 15.4 0.0 3.2 2 1 1 3 3 3 1 NACHT domain RFC1 PF08519.12 gi|327311518|ref|YP_004338415.1| - 0.0002 21.5 0.1 0.00072 19.8 0.1 1.9 1 1 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_7 PF12775.7 gi|327311518|ref|YP_004338415.1| - 0.00033 20.2 0.0 0.00062 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF815 PF05673.13 gi|327311518|ref|YP_004338415.1| - 0.00045 19.5 0.0 0.0014 17.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|327311518|ref|YP_004338415.1| - 0.00059 20.1 0.0 0.0019 18.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|327311518|ref|YP_004338415.1| - 0.00091 19.4 0.0 0.0018 18.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|327311518|ref|YP_004338415.1| - 0.001 19.0 0.0 0.0026 17.7 0.0 1.7 1 0 0 1 1 1 1 NTPase AAA_18 PF13238.6 gi|327311518|ref|YP_004338415.1| - 0.0011 19.5 0.0 0.0033 18.0 0.0 1.9 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|327311518|ref|YP_004338415.1| - 0.0011 19.5 0.1 0.0053 17.3 0.0 2.0 2 0 0 2 2 2 1 ABC transporter IstB_IS21 PF01695.17 gi|327311518|ref|YP_004338415.1| - 0.0015 18.3 0.2 0.0088 15.8 0.0 2.2 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_2 PF07724.14 gi|327311518|ref|YP_004338415.1| - 0.0031 17.7 0.0 0.0059 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RsgA_GTPase PF03193.16 gi|327311518|ref|YP_004338415.1| - 0.0036 17.2 0.0 0.0072 16.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_17 PF13207.6 gi|327311518|ref|YP_004338415.1| - 0.0049 17.3 0.1 0.048 14.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|327311518|ref|YP_004338415.1| - 0.0057 16.6 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE T2SSE PF00437.20 gi|327311518|ref|YP_004338415.1| - 0.0087 15.2 0.0 0.016 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_11 PF13086.6 gi|327311518|ref|YP_004338415.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|327311518|ref|YP_004338415.1| - 0.015 15.0 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|327311518|ref|YP_004338415.1| - 0.015 14.9 0.0 0.039 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|327311518|ref|YP_004338415.1| - 0.015 15.1 0.0 0.036 13.9 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|327311518|ref|YP_004338415.1| - 0.016 14.9 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|327311518|ref|YP_004338415.1| - 0.036 13.8 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|327311518|ref|YP_004338415.1| - 0.044 14.1 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|327311518|ref|YP_004338415.1| - 0.045 13.1 0.0 7.2 5.9 0.1 2.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family Mg_chelatase PF01078.21 gi|327311518|ref|YP_004338415.1| - 0.051 13.0 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|327311518|ref|YP_004338415.1| - 0.081 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AFG1_ATPase PF03969.16 gi|327311518|ref|YP_004338415.1| - 0.1 11.5 0.1 0.33 9.8 0.0 1.7 2 0 0 2 2 2 0 AFG1-like ATPase HTH_5 PF01022.20 gi|327311519|ref|YP_004338416.1| - 1.1e-09 37.9 0.7 1.7e-09 37.3 0.3 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|327311519|ref|YP_004338416.1| - 1.1e-07 31.9 0.1 1.9e-07 31.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|327311519|ref|YP_004338416.1| - 1.8e-06 27.4 0.8 1.8e-06 27.4 0.8 1.7 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|327311519|ref|YP_004338416.1| - 7.9e-05 22.9 0.3 0.00011 22.5 0.3 1.3 1 1 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|327311519|ref|YP_004338416.1| - 0.00013 21.9 0.1 0.00021 21.1 0.1 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|327311519|ref|YP_004338416.1| - 0.00046 20.0 0.1 0.00084 19.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|327311519|ref|YP_004338416.1| - 0.00073 19.5 0.6 0.0016 18.4 0.6 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|327311519|ref|YP_004338416.1| - 0.0025 17.5 0.2 0.0036 17.0 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|327311519|ref|YP_004338416.1| - 0.003 17.4 0.1 0.0037 17.1 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|327311519|ref|YP_004338416.1| - 0.0068 16.2 0.3 0.0076 16.1 0.3 1.2 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|327311519|ref|YP_004338416.1| - 0.015 15.3 0.1 0.022 14.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_10 PF04967.12 gi|327311519|ref|YP_004338416.1| - 0.021 14.6 0.3 0.048 13.5 0.1 1.7 2 0 0 2 2 2 0 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|327311519|ref|YP_004338416.1| - 0.023 14.9 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MazG-like PF12643.7 gi|327311519|ref|YP_004338416.1| - 0.024 14.9 0.1 0.035 14.4 0.1 1.3 1 0 0 1 1 1 0 MazG-like family TFIIE_alpha PF02002.17 gi|327311519|ref|YP_004338416.1| - 0.026 14.4 0.6 0.038 13.9 0.3 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit Ribosomal_S25 PF03297.15 gi|327311519|ref|YP_004338416.1| - 0.031 14.5 0.1 0.041 14.1 0.1 1.2 1 0 0 1 1 1 0 S25 ribosomal protein HTH_34 PF13601.6 gi|327311519|ref|YP_004338416.1| - 0.032 14.4 0.0 0.037 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_1 PF01527.20 gi|327311519|ref|YP_004338416.1| - 0.036 14.4 0.1 0.047 14.0 0.1 1.2 1 0 0 1 1 1 0 Transposase HTH_11 PF08279.12 gi|327311519|ref|YP_004338416.1| - 0.051 13.5 0.9 0.084 12.8 0.9 1.4 1 0 0 1 1 1 0 HTH domain E3_UbLigase_EDD PF11547.8 gi|327311519|ref|YP_004338416.1| - 0.056 13.1 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD HTH_CodY PF08222.11 gi|327311519|ref|YP_004338416.1| - 0.069 12.7 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_26 PF13443.6 gi|327311519|ref|YP_004338416.1| - 0.096 13.1 0.2 0.21 12.0 0.0 1.6 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Mnd1 PF03962.15 gi|327311519|ref|YP_004338416.1| - 0.12 12.7 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 Mnd1 HTH domain Cdc6_C PF09079.11 gi|327311520|ref|YP_004338417.1| - 1.6e-20 72.8 0.0 3.7e-20 71.7 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|327311520|ref|YP_004338417.1| - 4.2e-06 27.1 0.0 1.3e-05 25.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|327311520|ref|YP_004338417.1| - 5.1e-06 27.0 0.0 1.3e-05 25.6 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain PCP_red PF08369.10 gi|327311520|ref|YP_004338417.1| - 0.013 15.6 0.2 8.4 6.7 0.0 2.7 1 1 1 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit AAA_assoc_2 PF16193.5 gi|327311520|ref|YP_004338417.1| - 0.021 15.1 0.1 0.046 14.1 0.1 1.6 1 0 0 1 1 1 0 AAA C-terminal domain AAA PF00004.29 gi|327311520|ref|YP_004338417.1| - 0.1 13.1 0.0 0.47 10.9 0.0 2.2 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) ORC5_C PF14630.6 gi|327311520|ref|YP_004338417.1| - 0.21 11.1 0.1 1.8 8.0 0.0 2.1 1 1 1 2 2 2 0 Origin recognition complex (ORC) subunit 5 C-terminus NfeD PF01957.18 gi|327311522|ref|YP_004338419.1| - 6.4e-10 39.3 0.3 9.5e-10 38.7 0.1 1.4 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding PhoR PF11808.8 gi|327311522|ref|YP_004338419.1| - 0.038 14.4 0.5 0.053 13.9 0.5 1.2 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR DUF4175 PF13779.6 gi|327311522|ref|YP_004338419.1| - 0.33 8.8 1.6 0.38 8.6 1.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Methyltransf_11 PF08241.12 gi|327311523|ref|YP_004338420.1| - 1.7e-05 25.3 0.0 3.6e-05 24.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327311523|ref|YP_004338420.1| - 2.1e-05 25.1 0.1 7.9e-05 23.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327311523|ref|YP_004338420.1| - 0.0005 19.9 0.0 0.00054 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|327311523|ref|YP_004338420.1| - 0.019 14.8 0.3 0.033 14.0 0.0 1.7 2 1 0 2 2 2 0 Methyltransferase domain CMAS PF02353.20 gi|327311523|ref|YP_004338420.1| - 0.034 13.5 0.0 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF3195 PF11424.8 gi|327311524|ref|YP_004338421.1| - 4e-31 106.9 0.0 5e-31 106.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) Chorismate_bind PF00425.18 gi|327311525|ref|YP_004338422.1| - 6.8e-92 307.7 0.0 8.4e-92 307.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|327311525|ref|YP_004338422.1| - 2e-08 34.6 0.0 6.6e-07 29.6 0.0 2.8 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|327311526|ref|YP_004338423.1| - 9.6e-48 162.5 0.0 1.1e-47 162.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|327311526|ref|YP_004338423.1| - 3.7e-11 43.2 0.1 2e-10 40.8 0.1 2.0 1 1 0 1 1 1 1 Peptidase C26 IGPS PF00218.21 gi|327311527|ref|YP_004338424.1| - 3.2e-48 164.1 0.0 3.9e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|327311527|ref|YP_004338424.1| - 0.00028 20.4 0.0 0.00098 18.6 0.0 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|327311527|ref|YP_004338424.1| - 0.00057 19.4 0.2 0.75 9.1 0.0 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase NanE PF04131.14 gi|327311527|ref|YP_004338424.1| - 0.0031 16.7 0.1 0.0091 15.2 0.0 1.7 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|327311527|ref|YP_004338424.1| - 0.026 13.6 0.1 0.035 13.2 0.1 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase ThiG PF05690.14 gi|327311527|ref|YP_004338424.1| - 0.16 11.2 0.1 0.37 10.1 0.0 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG DUF2258 PF10015.9 gi|327311528|ref|YP_004338425.1| - 4.7e-26 90.7 1.8 7.9e-26 90.0 1.8 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) ABC_tran_CTD PF16326.5 gi|327311528|ref|YP_004338425.1| - 1.9 8.8 7.7 0.71 10.2 0.7 2.7 3 0 0 3 3 3 0 ABC transporter C-terminal domain Thiamine_BP PF01910.17 gi|327311529|ref|YP_004338426.1| - 5.5e-26 90.3 0.1 6.2e-26 90.1 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein FlpD PF02662.16 gi|327311529|ref|YP_004338426.1| - 0.13 12.3 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit CobS PF02654.15 gi|327311530|ref|YP_004338427.1| - 9.5e-37 127.2 10.4 1.1e-36 127.0 10.4 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Aminotran_1_2 PF00155.21 gi|327311531|ref|YP_004338428.1| - 5.3e-20 71.9 0.0 8.3e-20 71.3 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Pyr_redox_2 PF07992.14 gi|327311532|ref|YP_004338429.1| - 1.7e-17 63.6 0.7 2.6e-12 46.6 0.2 2.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327311532|ref|YP_004338429.1| - 2.1e-06 28.2 2.3 0.0062 17.1 0.3 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|327311532|ref|YP_004338429.1| - 0.0054 16.4 3.3 0.094 12.3 0.3 2.7 2 1 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|327311532|ref|YP_004338429.1| - 0.017 15.2 0.2 0.73 9.8 0.1 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|327311532|ref|YP_004338429.1| - 0.022 13.8 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|327311532|ref|YP_004338429.1| - 0.026 13.6 0.7 0.039 13.0 0.7 1.4 1 1 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.6 gi|327311532|ref|YP_004338429.1| - 0.031 14.5 0.8 0.072 13.3 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.6 gi|327311532|ref|YP_004338429.1| - 0.076 12.1 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.6 gi|327311532|ref|YP_004338429.1| - 0.1 11.9 0.3 0.41 9.9 0.0 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|327311532|ref|YP_004338429.1| - 0.12 12.8 0.1 0.31 11.5 0.1 1.6 2 0 0 2 2 2 0 Putative NAD(P)-binding CbiZ PF01955.18 gi|327311533|ref|YP_004338430.1| - 4.2e-28 98.7 0.0 4.8e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase DBI_PRT PF02277.17 gi|327311534|ref|YP_004338431.1| - 2.1e-09 37.1 3.1 3.3e-09 36.5 3.1 1.3 1 0 0 1 1 1 1 Phosphoribosyltransferase CobA_CobO_BtuR PF02572.15 gi|327311535|ref|YP_004338432.1| - 3.5e-33 115.3 0.0 5.6e-32 111.4 0.0 1.9 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YmdB PF13277.6 gi|327311535|ref|YP_004338432.1| - 0.035 13.4 0.0 0.049 13.0 0.0 1.2 1 0 0 1 1 1 0 YmdB-like protein UBA_3 PF09288.10 gi|327311535|ref|YP_004338432.1| - 0.09 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain NTP_transf_3 PF12804.7 gi|327311536|ref|YP_004338433.1| - 7.8e-17 62.1 0.4 1.5e-16 61.2 0.4 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain ParBc PF02195.18 gi|327311536|ref|YP_004338433.1| - 0.026 14.8 0.0 0.048 14.0 0.0 1.4 1 0 0 1 1 1 0 ParB-like nuclease domain Xan_ur_permease PF00860.20 gi|327311537|ref|YP_004338434.1| - 7.2e-24 84.2 51.3 1.4e-22 80.0 48.4 2.4 1 1 0 1 1 1 1 Permease family EamA PF00892.20 gi|327311538|ref|YP_004338435.1| - 1.2e-22 80.5 39.6 8.9e-14 51.8 16.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family PEPcase_2 PF14010.6 gi|327311539|ref|YP_004338436.1| - 1.9e-108 363.1 0.0 4.1e-108 362.0 0.0 1.6 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|327311539|ref|YP_004338436.1| - 1.2e-05 23.6 0.0 2.8e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEP-utilizers_C PF02896.18 gi|327311539|ref|YP_004338436.1| - 0.066 12.3 0.1 0.1 11.7 0.1 1.3 1 0 0 1 1 1 0 PEP-utilising enzyme, TIM barrel domain MoCF_biosynth PF00994.24 gi|327311540|ref|YP_004338437.1| - 1.8e-36 125.0 0.0 2.3e-36 124.6 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain AhpC-TSA PF00578.21 gi|327311541|ref|YP_004338438.1| - 9.1e-29 99.9 0.0 1e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|327311541|ref|YP_004338438.1| - 4.2e-19 68.7 0.0 4.7e-19 68.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|327311541|ref|YP_004338438.1| - 0.00098 19.2 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme GSHPx PF00255.19 gi|327311541|ref|YP_004338438.1| - 0.0022 17.5 0.0 0.0041 16.7 0.0 1.5 1 1 0 1 1 1 1 Glutathione peroxidase Thioredoxin_8 PF13905.6 gi|327311541|ref|YP_004338438.1| - 0.083 13.2 0.0 0.12 12.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like AIRS_C PF02769.22 gi|327311542|ref|YP_004338439.1| - 1.1e-25 90.6 2.6 5.1e-25 88.4 1.5 2.0 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|327311542|ref|YP_004338439.1| - 7.6e-16 58.6 0.1 7e-15 55.5 0.0 2.3 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PadR PF03551.14 gi|327311543|ref|YP_004338440.1| - 3.3e-19 68.6 0.0 4.9e-19 68.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_42 PF06224.12 gi|327311543|ref|YP_004338440.1| - 2.8e-05 23.8 0.0 3.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|327311543|ref|YP_004338440.1| - 0.00098 19.0 0.4 0.032 14.2 0.1 2.5 3 0 0 3 3 3 1 HTH domain DUF4364 PF14277.6 gi|327311543|ref|YP_004338440.1| - 0.0012 18.6 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_20 PF12840.7 gi|327311543|ref|YP_004338440.1| - 0.0039 17.2 0.0 0.063 13.4 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain DUF505 PF04458.12 gi|327311543|ref|YP_004338440.1| - 0.0069 14.8 0.0 0.008 14.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) TrmB PF01978.19 gi|327311543|ref|YP_004338440.1| - 0.019 14.8 0.0 0.13 12.1 0.0 2.1 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|327311543|ref|YP_004338440.1| - 0.064 13.1 0.1 8.3 6.4 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|327311543|ref|YP_004338440.1| - 0.076 13.1 0.0 0.09 12.8 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation RTP PF02334.16 gi|327311543|ref|YP_004338440.1| - 0.14 12.8 0.0 0.2 12.3 0.0 1.3 1 1 0 1 1 1 0 Replication terminator protein FUR PF01475.19 gi|327311543|ref|YP_004338440.1| - 0.16 12.1 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family NTPase_1 PF03266.15 gi|327311544|ref|YP_004338441.1| - 1.8e-43 148.4 0.0 2e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|327311544|ref|YP_004338441.1| - 3.4e-07 30.0 0.5 8.7e-07 28.7 0.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_30 PF13604.6 gi|327311544|ref|YP_004338441.1| - 2.3e-05 24.2 1.1 6.3e-05 22.8 1.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|327311544|ref|YP_004338441.1| - 8.8e-05 23.1 0.1 0.00016 22.2 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327311544|ref|YP_004338441.1| - 0.00013 22.2 0.4 0.00056 20.2 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|327311544|ref|YP_004338441.1| - 0.00019 21.7 0.2 0.002 18.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|327311544|ref|YP_004338441.1| - 0.0004 20.8 0.3 0.00062 20.2 0.3 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|327311544|ref|YP_004338441.1| - 0.00053 20.4 0.5 0.00099 19.5 0.2 1.6 2 1 0 2 2 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|327311544|ref|YP_004338441.1| - 0.00078 19.2 0.0 0.0021 17.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|327311544|ref|YP_004338441.1| - 0.001 18.9 2.8 0.0075 16.0 0.2 2.7 2 1 1 3 3 3 1 IstB-like ATP binding protein NACHT PF05729.12 gi|327311544|ref|YP_004338441.1| - 0.0017 18.3 0.2 0.0045 16.9 0.1 1.7 2 0 0 2 2 2 1 NACHT domain AAA_33 PF13671.6 gi|327311544|ref|YP_004338441.1| - 0.0031 17.7 0.1 0.0059 16.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|327311544|ref|YP_004338441.1| - 0.0037 17.7 0.1 0.0056 17.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|327311544|ref|YP_004338441.1| - 0.0069 16.0 2.6 0.0082 15.7 0.2 2.1 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|327311544|ref|YP_004338441.1| - 0.0098 15.9 0.3 0.022 14.7 0.2 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|327311544|ref|YP_004338441.1| - 0.01 15.2 0.1 0.013 14.9 0.1 1.5 1 1 0 1 1 1 0 KaiC cobW PF02492.19 gi|327311544|ref|YP_004338441.1| - 0.012 15.3 0.1 0.025 14.2 0.1 1.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|327311544|ref|YP_004338441.1| - 0.013 15.8 0.1 0.09 13.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|327311544|ref|YP_004338441.1| - 0.014 15.4 0.0 0.025 14.7 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|327311544|ref|YP_004338441.1| - 0.027 14.3 0.2 0.043 13.6 0.2 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DnaB_C PF03796.15 gi|327311544|ref|YP_004338441.1| - 0.029 13.7 0.0 0.27 10.5 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain MeaB PF03308.16 gi|327311544|ref|YP_004338441.1| - 0.03 13.3 0.9 0.044 12.7 0.9 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RuvB_N PF05496.12 gi|327311544|ref|YP_004338441.1| - 0.036 13.8 0.1 0.13 12.0 0.1 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain APS_kinase PF01583.20 gi|327311544|ref|YP_004338441.1| - 0.062 13.2 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.14 gi|327311544|ref|YP_004338441.1| - 0.068 13.1 0.1 0.13 12.2 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B HTH_47 PF16221.5 gi|327311544|ref|YP_004338441.1| - 0.093 12.3 0.2 11 5.7 0.0 2.4 1 1 1 2 2 2 0 winged helix-turn-helix Cytidylate_kin PF02224.18 gi|327311544|ref|YP_004338441.1| - 0.11 12.3 0.2 0.15 11.7 0.2 1.2 1 0 0 1 1 1 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|327311544|ref|YP_004338441.1| - 0.11 12.3 0.1 0.66 9.7 0.1 1.9 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Mg_chelatase PF01078.21 gi|327311544|ref|YP_004338441.1| - 0.11 11.9 0.1 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|327311544|ref|YP_004338441.1| - 0.12 11.4 0.2 0.29 10.2 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein PRK PF00485.18 gi|327311544|ref|YP_004338441.1| - 0.13 12.0 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KTI12 PF08433.10 gi|327311544|ref|YP_004338441.1| - 0.15 11.5 0.1 0.21 11.0 0.1 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|327311544|ref|YP_004338441.1| - 0.18 11.0 0.2 0.25 10.5 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain SRP54 PF00448.22 gi|327311544|ref|YP_004338441.1| - 0.18 11.4 0.1 0.5 10.0 0.2 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF2075 PF09848.9 gi|327311544|ref|YP_004338441.1| - 0.23 10.7 0.5 0.32 10.2 0.5 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|327311544|ref|YP_004338441.1| - 0.23 10.9 0.2 0.38 10.2 0.2 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_11 PF13086.6 gi|327311544|ref|YP_004338441.1| - 0.28 10.9 0.1 0.61 9.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF1641 PF07849.11 gi|327311545|ref|YP_004338442.1| - 4e-17 61.8 2.9 9.4e-17 60.6 0.6 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) HisKA PF00512.25 gi|327311545|ref|YP_004338442.1| - 0.01 15.9 0.2 0.033 14.2 0.3 1.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain HMW1C_N PF18071.1 gi|327311545|ref|YP_004338442.1| - 0.028 14.2 0.1 0.046 13.5 0.1 1.3 1 0 0 1 1 1 0 HMW1C N-terminal ATP-synt PF00231.19 gi|327311545|ref|YP_004338442.1| - 0.19 11.5 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 ATP synthase Pyr_redox_2 PF07992.14 gi|327311546|ref|YP_004338443.1| - 3.5e-12 46.2 0.0 6.2e-12 45.3 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327311546|ref|YP_004338443.1| - 0.0052 17.3 0.1 4.2 8.0 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|327311546|ref|YP_004338443.1| - 0.087 12.8 0.1 0.75 9.8 0.1 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|327311546|ref|YP_004338443.1| - 0.092 13.0 0.2 0.19 12.0 0.2 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|327311546|ref|YP_004338443.1| - 0.13 11.1 0.1 0.2 10.4 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Ribosomal_L5e PF17144.4 gi|327311547|ref|YP_004338444.1| - 2.5e-28 99.1 2.6 2.6e-16 60.1 1.4 3.1 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|327311547|ref|YP_004338444.1| - 4.3e-13 50.0 0.6 7.1e-13 49.3 0.6 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|327311547|ref|YP_004338444.1| - 6.6e-09 36.2 0.1 1e-08 35.5 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|327311548|ref|YP_004338445.1| - 6.9e-46 155.9 4.3 7.7e-46 155.7 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|327311549|ref|YP_004338446.1| - 1.9e-35 121.5 0.0 3e-35 120.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L32 Mitoc_mL59 PF18126.1 gi|327311549|ref|YP_004338446.1| - 0.0048 17.2 0.8 0.0069 16.7 0.8 1.4 1 0 0 1 1 1 1 Mitochondrial ribosomal protein mL59 Pribosyltran PF00156.27 gi|327311550|ref|YP_004338447.1| - 3.3e-20 72.2 0.1 4.5e-20 71.8 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|327311550|ref|YP_004338447.1| - 0.00095 18.7 0.1 0.0012 18.4 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Resolvase PF00239.21 gi|327311551|ref|YP_004338448.1| - 4.4e-36 124.2 0.1 5.7e-36 123.8 0.1 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain Complex1_LYR PF05347.15 gi|327311551|ref|YP_004338448.1| - 0.0052 16.8 0.6 0.012 15.6 0.0 2.0 3 0 0 3 3 2 1 Complex 1 protein (LYR family) Sigma70_r4 PF04545.16 gi|327311551|ref|YP_004338448.1| - 0.013 15.0 0.9 0.37 10.3 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 DUF35_N PF12172.8 gi|327311551|ref|YP_004338448.1| - 0.025 14.4 1.7 3.5 7.6 0.4 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3420 PF11900.8 gi|327311551|ref|YP_004338448.1| - 0.035 14.2 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) Lar_restr_allev PF14354.6 gi|327311551|ref|YP_004338448.1| - 0.061 13.7 0.4 0.16 12.4 0.4 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|327311551|ref|YP_004338448.1| - 0.069 13.2 0.2 0.12 12.4 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.11 gi|327311551|ref|YP_004338448.1| - 0.1 12.7 0.2 0.24 11.6 0.2 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_SprT PF17283.2 gi|327311551|ref|YP_004338448.1| - 0.15 12.0 1.2 0.39 10.7 1.2 1.7 1 1 0 1 1 1 0 SprT-like zinc ribbon domain FaeA PF04703.12 gi|327311551|ref|YP_004338448.1| - 0.15 12.4 0.1 0.52 10.7 0.0 1.9 2 0 0 2 2 2 0 FaeA-like protein AvrPphF-ORF-2 PF09143.10 gi|327311551|ref|YP_004338448.1| - 0.16 11.9 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 AvrPphF-ORF-2 zf_C2H2_10 PF18414.1 gi|327311551|ref|YP_004338448.1| - 1.1 8.9 3.3 3.3 7.3 0.1 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1610 PF07754.11 gi|327311551|ref|YP_004338448.1| - 1.4 9.0 4.9 3.5 7.7 1.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|327311551|ref|YP_004338448.1| - 4.6 7.1 6.1 0.85 9.4 0.7 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF429 PF04250.13 gi|327311552|ref|YP_004338449.1| - 4.7e-12 46.2 1.4 1.7e-07 31.2 0.1 3.0 1 1 1 2 2 2 2 Protein of unknown function (DUF429) Ribosomal_S8 PF00410.19 gi|327311553|ref|YP_004338450.1| - 9.1e-22 77.4 0.0 3.1e-21 75.6 0.0 1.7 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|327311554|ref|YP_004338451.1| - 2.8e-11 43.0 6.8 3.4e-11 42.7 6.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|327311554|ref|YP_004338451.1| - 0.011 15.6 5.0 0.021 14.7 5.0 1.5 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS91 PF14319.6 gi|327311554|ref|YP_004338451.1| - 0.018 15.1 0.3 0.018 15.1 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-CCHC_3 PF13917.6 gi|327311554|ref|YP_004338451.1| - 0.024 14.6 2.9 0.19 11.7 0.3 2.4 2 0 0 2 2 2 0 Zinc knuckle DUF1451 PF07295.11 gi|327311554|ref|YP_004338451.1| - 0.045 13.8 0.2 0.049 13.7 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-HYPF PF07503.12 gi|327311554|ref|YP_004338451.1| - 0.083 12.7 7.0 1.5 8.7 0.3 2.1 2 0 0 2 2 2 0 HypF finger CTP_synth_N PF06418.14 gi|327311555|ref|YP_004338452.1| - 6.9e-119 396.0 0.0 8.8e-119 395.7 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|327311555|ref|YP_004338452.1| - 5.3e-51 173.1 0.0 1e-50 172.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|327311555|ref|YP_004338452.1| - 3.6e-08 33.4 0.0 9e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|327311555|ref|YP_004338452.1| - 9.6e-05 22.4 0.0 0.00013 22.1 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|327311555|ref|YP_004338452.1| - 0.018 14.3 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain HEPN_SAV_6107 PF18726.1 gi|327311555|ref|YP_004338452.1| - 0.21 12.1 0.4 5.3 7.6 0.0 2.4 1 1 1 2 2 2 0 SAV_6107-like HEPN Oxidored_q4 PF00507.19 gi|327311556|ref|YP_004338453.1| - 1.4e-08 34.8 1.9 1.4e-08 34.8 0.2 1.7 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 OppC_N PF12911.7 gi|327311556|ref|YP_004338453.1| - 0.0033 17.4 6.7 0.14 12.2 0.2 2.6 3 0 0 3 3 3 2 N-terminal TM domain of oligopeptide transport permease C DUF4029 PF13221.6 gi|327311556|ref|YP_004338453.1| - 0.17 12.5 0.2 0.17 12.5 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4029) HemY_N PF07219.13 gi|327311556|ref|YP_004338453.1| - 3 8.1 7.3 6.9 6.9 0.5 2.2 2 1 0 2 2 2 0 HemY protein N-terminus DUF4083 PF13314.6 gi|327311556|ref|YP_004338453.1| - 3.1 7.8 8.5 2.9 7.9 1.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) DUF485 PF04341.12 gi|327311556|ref|YP_004338453.1| - 3.2 7.8 12.1 0.63 10.0 4.3 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF485 DUF4131 PF13567.6 gi|327311556|ref|YP_004338453.1| - 5.1 6.7 7.1 38 3.9 7.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) eIF-6 PF01912.18 gi|327311557|ref|YP_004338454.1| - 5.1e-63 212.0 3.2 5.9e-63 211.8 3.2 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|327311558|ref|YP_004338455.1| - 1.5e-08 34.8 0.2 2.4e-08 34.1 0.1 1.4 2 0 0 2 2 2 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|327311559|ref|YP_004338456.1| - 2e-20 72.9 0.4 2.5e-20 72.6 0.4 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|327311559|ref|YP_004338456.1| - 1.4e-06 28.2 2.5 0.0059 16.5 0.1 2.1 1 1 1 2 2 2 2 Prefoldin subunit Tektin PF03148.14 gi|327311559|ref|YP_004338456.1| - 0.00063 18.6 2.4 0.12 11.1 0.3 2.0 2 0 0 2 2 2 2 Tektin family Spc7 PF08317.11 gi|327311559|ref|YP_004338456.1| - 0.0023 16.9 0.9 0.59 9.0 0.0 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein CHDCT2 PF08074.11 gi|327311559|ref|YP_004338456.1| - 0.0051 17.0 0.9 0.014 15.5 0.6 1.8 1 1 1 2 2 2 1 CHDCT2 (NUC038) domain APG6_N PF17675.1 gi|327311559|ref|YP_004338456.1| - 0.007 16.9 0.3 0.01 16.4 0.3 1.2 1 0 0 1 1 1 1 Apg6 coiled-coil region DUF4446 PF14584.6 gi|327311559|ref|YP_004338456.1| - 0.024 14.6 0.1 0.099 12.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Fib_alpha PF08702.10 gi|327311559|ref|YP_004338456.1| - 0.083 13.1 0.4 0.18 12.0 0.4 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family IFT57 PF10498.9 gi|327311559|ref|YP_004338456.1| - 0.087 11.8 0.3 2.1 7.2 0.0 2.0 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 DASH_Dam1 PF08653.10 gi|327311559|ref|YP_004338456.1| - 0.12 12.2 0.6 14 5.6 0.1 2.3 2 0 0 2 2 2 0 DASH complex subunit Dam1 APG17 PF04108.12 gi|327311559|ref|YP_004338456.1| - 0.16 11.0 2.3 6.2 5.8 0.2 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF5082 PF16888.5 gi|327311559|ref|YP_004338456.1| - 0.23 11.8 3.1 5.5 7.3 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|327311559|ref|YP_004338456.1| - 0.28 11.6 5.5 1.4 9.3 0.7 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) GPHR_N PF12537.8 gi|327311559|ref|YP_004338456.1| - 0.38 10.9 3.5 43 4.3 0.1 3.3 2 2 1 3 3 3 0 The Golgi pH Regulator (GPHR) Family N-terminal SRP54 PF00448.22 gi|327311560|ref|YP_004338457.1| - 2.5e-67 226.3 0.0 3.3e-67 225.9 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|327311560|ref|YP_004338457.1| - 6.3e-08 32.7 0.6 1.5e-07 31.5 0.6 1.7 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|327311560|ref|YP_004338457.1| - 4.9e-05 23.1 0.6 0.00011 22.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|327311560|ref|YP_004338457.1| - 0.00028 20.9 0.0 0.00066 19.7 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|327311560|ref|YP_004338457.1| - 0.0018 18.7 0.0 0.0032 17.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327311560|ref|YP_004338457.1| - 0.003 17.9 0.0 0.0086 16.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|327311560|ref|YP_004338457.1| - 0.0066 16.6 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|327311560|ref|YP_004338457.1| - 0.0089 16.5 0.0 0.017 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|327311560|ref|YP_004338457.1| - 0.0099 15.8 0.0 0.32 10.9 0.0 2.4 1 1 0 1 1 1 1 NTPase NACHT PF05729.12 gi|327311560|ref|YP_004338457.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|327311560|ref|YP_004338457.1| - 0.015 15.7 0.1 0.031 14.7 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|327311560|ref|YP_004338457.1| - 0.015 15.7 0.0 0.08 13.4 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|327311560|ref|YP_004338457.1| - 0.021 14.9 0.1 0.13 12.4 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|327311560|ref|YP_004338457.1| - 0.022 14.0 0.0 0.04 13.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.19 gi|327311560|ref|YP_004338457.1| - 0.022 14.3 0.0 0.057 13.0 0.0 1.6 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|327311560|ref|YP_004338457.1| - 0.029 13.4 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Peripla_BP_4 PF13407.6 gi|327311560|ref|YP_004338457.1| - 0.052 13.1 0.1 0.35 10.4 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein domain ABC_tran PF00005.27 gi|327311560|ref|YP_004338457.1| - 0.056 13.9 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.22 gi|327311560|ref|YP_004338457.1| - 0.087 12.0 0.0 5.5 6.1 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 gi|327311560|ref|YP_004338457.1| - 0.096 13.2 0.0 0.16 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|327311560|ref|YP_004338457.1| - 0.25 11.0 0.0 0.38 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain DUF3671 PF12420.8 gi|327311561|ref|YP_004338458.1| - 0.013 15.6 4.4 0.015 15.4 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function Spt5-NGN PF03439.13 gi|327311562|ref|YP_004338459.1| - 3.3e-14 52.5 0.3 6.1e-14 51.7 0.3 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|327311562|ref|YP_004338459.1| - 0.069 13.1 0.7 0.069 13.1 0.7 2.2 2 0 0 2 2 2 0 KOW motif Ribosomal_L11 PF00298.19 gi|327311563|ref|YP_004338460.1| - 5.4e-16 58.9 0.1 1e-15 58.0 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|327311563|ref|YP_004338460.1| - 0.019 14.8 0.1 0.043 13.7 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.21 gi|327311564|ref|YP_004338461.1| - 2.1e-37 128.8 0.0 2.6e-37 128.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RL10P_insert PF17777.1 gi|327311565|ref|YP_004338462.1| - 5.9e-21 74.2 0.0 1.2e-20 73.3 0.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|327311565|ref|YP_004338462.1| - 3.5e-19 68.8 0.0 5.9e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 RNA_pol_Rpb1_5 PF04998.17 gi|327311565|ref|YP_004338462.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 5 7TMR-HDED PF07697.11 gi|327311565|ref|YP_004338462.1| - 0.29 11.2 5.0 0.48 10.5 0.2 2.7 3 0 0 3 3 3 0 7TM-HD extracellular GHMP_kinases_N PF00288.26 gi|327311566|ref|YP_004338463.1| - 4.4e-09 36.5 2.4 4.4e-09 36.5 2.4 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|327311566|ref|YP_004338463.1| - 2.6e-06 27.7 0.1 2.1e-05 24.8 0.1 2.2 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|327311566|ref|YP_004338463.1| - 0.0016 17.9 0.1 0.0039 16.7 0.1 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature LAB_N PF07578.11 gi|327311567|ref|YP_004338464.1| - 0.0048 17.0 0.2 0.007 16.4 0.2 1.2 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain DUF3397 PF11877.8 gi|327311567|ref|YP_004338464.1| - 0.052 13.8 0.1 0.052 13.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3397) PRIMA1 PF16101.5 gi|327311567|ref|YP_004338464.1| - 0.076 13.1 0.1 0.088 12.8 0.1 1.1 1 0 0 1 1 1 0 Proline-rich membrane anchor 1 PNP_UDP_1 PF01048.20 gi|327311568|ref|YP_004338465.1| - 3e-42 144.5 0.7 3.6e-42 144.2 0.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF2122 PF09895.9 gi|327311570|ref|YP_004338467.1| - 6.5e-23 81.2 0.0 7.9e-23 80.9 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) HSP20 PF00011.21 gi|327311571|ref|YP_004338468.1| - 3.8e-11 43.0 0.0 1.8e-09 37.7 0.0 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|327311571|ref|YP_004338468.1| - 1.6e-09 37.2 0.0 2.8e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA BPD_transp_1 PF00528.22 gi|327311572|ref|YP_004338469.1| - 1.4e-29 103.1 7.9 2.8e-29 102.2 7.9 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Ste5 PF11610.8 gi|327311572|ref|YP_004338469.1| - 0.088 12.7 0.1 0.23 11.4 0.1 1.7 1 0 0 1 1 1 0 Scaffold protein Ste5, Fus3-binding region GTP_EFTU PF00009.27 gi|327311573|ref|YP_004338470.1| - 2.7e-22 79.3 0.4 6e-21 74.9 0.4 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|327311573|ref|YP_004338470.1| - 6e-16 58.5 0.3 1.2e-15 57.5 0.3 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|327311573|ref|YP_004338470.1| - 2e-06 28.1 0.2 4.8e-06 26.9 0.2 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|327311573|ref|YP_004338470.1| - 0.00057 19.9 0.0 0.0027 17.8 0.0 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|327311573|ref|YP_004338470.1| - 0.0045 16.9 0.3 0.014 15.3 0.1 1.8 2 0 0 2 2 2 1 RsgA GTPase FeoB_N PF02421.18 gi|327311573|ref|YP_004338470.1| - 0.0096 15.5 0.3 3 7.4 0.1 2.7 2 1 0 2 2 2 2 Ferrous iron transport protein B SRPRB PF09439.10 gi|327311573|ref|YP_004338470.1| - 0.012 15.1 0.1 0.31 10.4 0.1 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit MMR_HSR1_Xtn PF16897.5 gi|327311573|ref|YP_004338470.1| - 0.069 13.2 0.4 0.41 10.7 0.1 2.0 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain BPD_transp_2 PF02653.16 gi|327311574|ref|YP_004338471.1| - 7.7e-36 123.6 36.7 1.1e-35 123.2 36.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|327311575|ref|YP_004338472.1| - 1.6e-39 135.7 34.4 1.6e-39 135.7 34.4 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF4381 PF14316.6 gi|327311575|ref|YP_004338472.1| - 0.072 13.3 0.4 0.072 13.3 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) ABC_tran PF00005.27 gi|327311576|ref|YP_004338473.1| - 5.2e-38 130.6 0.0 2.6e-28 99.2 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|327311576|ref|YP_004338473.1| - 1.5e-10 41.4 0.7 3.8e-05 23.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|327311576|ref|YP_004338473.1| - 0.0019 17.9 0.1 0.12 12.1 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain DLIC PF05783.11 gi|327311576|ref|YP_004338473.1| - 0.015 14.2 0.2 0.024 13.5 0.2 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_30 PF13604.6 gi|327311576|ref|YP_004338473.1| - 0.022 14.5 0.6 0.11 12.2 0.1 2.5 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|327311576|ref|YP_004338473.1| - 0.032 14.7 0.1 0.049 14.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|327311576|ref|YP_004338473.1| - 0.11 10.0 0.1 0.15 9.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rad17 PF03215.15 gi|327311576|ref|YP_004338473.1| - 0.21 11.5 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Bmp PF02608.14 gi|327311577|ref|YP_004338474.1| - 2.8e-57 194.0 0.7 4.5e-57 193.3 0.7 1.3 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF4088 PF13317.6 gi|327311577|ref|YP_004338474.1| - 0.029 13.9 0.0 0.078 12.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) DUF929 PF06053.11 gi|327311577|ref|YP_004338474.1| - 0.15 11.4 3.4 1.5 8.1 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF929) AAA_25 PF13481.6 gi|327311579|ref|YP_004338476.1| - 0.002 17.8 0.1 0.0061 16.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327311579|ref|YP_004338476.1| - 0.0037 17.7 0.1 0.04 14.3 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain tRNA-synt_2_TM PF16995.5 gi|327311579|ref|YP_004338476.1| - 0.013 15.2 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Transmembrane region of lysyl-tRNA synthetase AAA_22 PF13401.6 gi|327311579|ref|YP_004338476.1| - 0.03 14.6 0.0 0.29 11.4 0.0 2.4 2 2 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|327311579|ref|YP_004338476.1| - 0.077 12.7 0.0 4.5 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|327311579|ref|YP_004338476.1| - 0.12 12.8 0.0 10 6.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|327311579|ref|YP_004338476.1| - 0.12 12.8 0.0 0.37 11.2 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mis14 PF08641.12 gi|327311580|ref|YP_004338477.1| - 0.019 15.3 0.1 0.029 14.7 0.1 1.2 1 0 0 1 1 1 0 Kinetochore protein Mis14 like DUF3883 PF13020.6 gi|327311582|ref|YP_004338479.1| - 7.1e-12 45.2 0.1 1.5e-11 44.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) Hjc PF01870.18 gi|327311582|ref|YP_004338479.1| - 0.098 12.7 0.1 0.51 10.4 0.0 2.2 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) AAA_22 PF13401.6 gi|327311583|ref|YP_004338480.1| - 1.3e-07 32.0 0.0 0.0051 17.1 0.0 3.6 4 0 0 4 4 4 2 AAA domain TPR_12 PF13424.6 gi|327311583|ref|YP_004338480.1| - 5e-06 26.7 5.9 2.9e-05 24.2 0.7 3.8 2 0 0 2 2 2 1 Tetratricopeptide repeat AAA_16 PF13191.6 gi|327311583|ref|YP_004338480.1| - 6.2e-05 23.4 5.3 0.00048 20.5 0.3 3.9 4 0 0 4 4 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|327311583|ref|YP_004338480.1| - 8.3e-05 22.6 0.0 0.053 13.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|327311583|ref|YP_004338480.1| - 0.00035 20.8 0.1 0.72 10.0 0.0 3.7 2 1 0 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|327311583|ref|YP_004338480.1| - 0.0006 19.4 2.4 0.082 12.5 0.0 4.2 4 0 0 4 4 4 1 AAA domain ABC_tran PF00005.27 gi|327311583|ref|YP_004338480.1| - 0.00061 20.3 0.0 0.0019 18.7 0.0 1.8 1 0 0 1 1 1 1 ABC transporter DUF815 PF05673.13 gi|327311583|ref|YP_004338480.1| - 0.00086 18.5 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA PF00004.29 gi|327311583|ref|YP_004338480.1| - 0.00095 19.6 0.0 0.1 13.0 0.0 3.0 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) TPR_10 PF13374.6 gi|327311583|ref|YP_004338480.1| - 0.0039 17.0 0.4 0.0039 17.0 0.4 3.4 4 0 0 4 4 1 1 Tetratricopeptide repeat NB-ARC PF00931.22 gi|327311583|ref|YP_004338480.1| - 0.0069 15.6 0.0 0.041 13.1 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain AAA_18 PF13238.6 gi|327311583|ref|YP_004338480.1| - 0.0085 16.6 0.0 0.94 10.0 0.0 3.7 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|327311583|ref|YP_004338480.1| - 0.017 14.8 0.0 0.043 13.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain TPR_8 PF13181.6 gi|327311583|ref|YP_004338480.1| - 0.019 15.1 1.6 0.019 15.1 1.6 2.7 2 0 0 2 2 1 0 Tetratricopeptide repeat RsgA_GTPase PF03193.16 gi|327311583|ref|YP_004338480.1| - 0.021 14.7 0.0 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase IstB_IS21 PF01695.17 gi|327311583|ref|YP_004338480.1| - 0.025 14.3 0.0 0.41 10.4 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|327311583|ref|YP_004338480.1| - 0.026 14.4 0.0 3.5 7.5 0.0 2.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|327311583|ref|YP_004338480.1| - 0.028 14.5 0.1 0.15 12.1 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|327311583|ref|YP_004338480.1| - 0.039 13.7 0.0 7 6.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|327311583|ref|YP_004338480.1| - 0.059 13.8 0.0 3.1 8.2 0.0 2.4 2 0 0 2 2 2 0 RNA helicase TPR_2 PF07719.17 gi|327311583|ref|YP_004338480.1| - 0.072 13.2 10.1 0.024 14.7 3.4 3.8 3 0 0 3 3 2 0 Tetratricopeptide repeat AAA_23 PF13476.6 gi|327311583|ref|YP_004338480.1| - 0.58 10.6 4.7 1.9 8.9 0.0 3.1 3 0 0 3 3 3 0 AAA domain TPR_1 PF00515.28 gi|327311583|ref|YP_004338480.1| - 1.2 9.1 6.3 0.35 10.8 2.3 2.4 2 0 0 2 2 1 0 Tetratricopeptide repeat Apolipoprotein PF01442.18 gi|327311583|ref|YP_004338480.1| - 1.6 8.6 9.7 1.3 8.8 3.4 3.5 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain Prefoldin_2 PF01920.20 gi|327311583|ref|YP_004338480.1| - 2.6 8.1 5.5 11 6.0 0.1 2.9 2 0 0 2 2 2 0 Prefoldin subunit BLOC1_2 PF10046.9 gi|327311583|ref|YP_004338480.1| - 3.2 8.1 7.1 0.29 11.5 0.3 2.8 4 0 0 4 4 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AA_kinase PF00696.28 gi|327311584|ref|YP_004338481.1| - 0.00046 19.9 0.0 0.00046 19.9 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family zf_PR_Knuckle PF18445.1 gi|327311585|ref|YP_004338482.1| - 0.085 12.7 0.3 0.085 12.7 0.3 2.0 3 0 0 3 3 3 0 PR zinc knuckle motif PSP1 PF04468.12 gi|327311585|ref|YP_004338482.1| - 0.12 12.7 1.0 0.28 11.5 1.0 1.8 1 1 0 1 1 1 0 PSP1 C-terminal conserved region DUF1156 PF06634.12 gi|327311587|ref|YP_004338484.1| - 1.5e-10 41.1 0.1 4.3e-10 39.5 0.1 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF1156) Cons_hypoth95 PF03602.15 gi|327311587|ref|YP_004338484.1| - 3e-07 30.3 0.0 0.01 15.5 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|327311587|ref|YP_004338484.1| - 3.9e-06 26.7 0.0 0.0049 16.6 0.0 3.1 3 0 0 3 3 3 2 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|327311587|ref|YP_004338484.1| - 0.01 15.6 0.0 2.1 8.0 0.0 2.4 2 0 0 2 2 2 0 DNA methylase Met_10 PF02475.16 gi|327311587|ref|YP_004338484.1| - 0.19 11.5 0.0 0.41 10.4 0.0 1.5 1 0 0 1 1 1 0 Met-10+ like-protein DUF499 PF04465.12 gi|327311588|ref|YP_004338485.1| - 2.9e-10 38.6 0.0 2.8e-09 35.4 0.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF499) CDPS PF16715.5 gi|327311588|ref|YP_004338485.1| - 0.11 12.1 0.1 0.26 10.9 0.1 1.5 1 0 0 1 1 1 0 Cyclodipeptide synthase AAA_16 PF13191.6 gi|327311588|ref|YP_004338485.1| - 0.17 12.3 3.5 0.99 9.8 0.3 3.6 3 1 0 3 3 3 0 AAA ATPase domain SNF2_N PF00176.23 gi|327311590|ref|YP_004338487.1| - 5.3e-15 55.0 0.0 1.9e-14 53.2 0.0 1.9 1 1 1 2 2 2 1 SNF2 family N-terminal domain Helicase_C PF00271.31 gi|327311590|ref|YP_004338487.1| - 7.5e-12 45.6 0.0 1.8e-11 44.4 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DUF3883 PF13020.6 gi|327311590|ref|YP_004338487.1| - 2.3e-09 37.2 0.0 6.5e-09 35.7 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ResIII PF04851.15 gi|327311590|ref|YP_004338487.1| - 4.3e-07 30.1 0.0 9.2e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit NERD PF08378.11 gi|327311590|ref|YP_004338487.1| - 0.0051 17.3 0.0 0.015 15.7 0.0 1.8 1 0 0 1 1 1 1 Nuclease-related domain DEAD PF00270.29 gi|327311590|ref|YP_004338487.1| - 0.013 15.2 0.0 0.39 10.5 0.0 2.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase Methyltransf_24 PF13578.6 gi|327311590|ref|YP_004338487.1| - 0.015 16.3 0.1 14 6.7 0.0 3.6 3 0 0 3 3 3 0 Methyltransferase domain PDDEXK_5 PF11645.8 gi|327311590|ref|YP_004338487.1| - 0.055 13.4 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 PD-(D/E)XK endonuclease MTES_1575 PF18741.1 gi|327311590|ref|YP_004338487.1| - 0.078 13.2 0.0 1.3 9.3 0.0 2.9 2 0 0 2 2 2 0 REase_MTES_1575 Zn_Tnp_IS1595 PF12760.7 gi|327311591|ref|YP_004338488.1| - 0.00056 19.8 1.5 0.00083 19.3 1.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|327311591|ref|YP_004338488.1| - 0.0008 19.5 1.9 0.34 11.1 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain HypA PF01155.19 gi|327311591|ref|YP_004338488.1| - 0.0042 17.1 0.3 0.11 12.5 0.3 2.0 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3268 PF11672.8 gi|327311591|ref|YP_004338488.1| - 0.0062 16.9 0.6 0.0065 16.8 0.6 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain TF_Zn_Ribbon PF08271.12 gi|327311591|ref|YP_004338488.1| - 0.0089 15.5 5.0 0.15 11.6 4.9 2.1 1 1 1 2 2 2 1 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|327311591|ref|YP_004338488.1| - 0.018 14.4 2.4 0.037 13.4 2.4 1.5 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|327311591|ref|YP_004338488.1| - 0.019 14.4 2.8 0.096 12.1 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|327311591|ref|YP_004338488.1| - 0.021 15.2 2.6 0.78 10.2 3.2 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF35_N PF12172.8 gi|327311591|ref|YP_004338488.1| - 0.035 14.0 2.2 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|327311591|ref|YP_004338488.1| - 0.04 14.0 0.4 0.055 13.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon GFA PF04828.14 gi|327311591|ref|YP_004338488.1| - 0.053 13.9 0.9 0.098 13.0 0.0 1.7 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme TFIIS_C PF01096.18 gi|327311591|ref|YP_004338488.1| - 0.06 13.2 2.3 3.5 7.6 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Zn_ribbon_SprT PF17283.2 gi|327311591|ref|YP_004338488.1| - 0.085 12.8 3.5 0.36 10.8 2.7 2.2 2 1 0 2 2 2 0 SprT-like zinc ribbon domain zf-ISL3 PF14690.6 gi|327311591|ref|YP_004338488.1| - 0.094 13.4 4.6 0.6 10.8 0.3 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Sec23_Sec24 PF04810.15 gi|327311591|ref|YP_004338488.1| - 0.096 12.8 1.2 3.8 7.6 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_2 PF13240.6 gi|327311591|ref|YP_004338488.1| - 0.12 12.2 0.3 0.12 12.2 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|327311591|ref|YP_004338488.1| - 0.12 12.8 1.3 0.17 12.3 1.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-C2H2_4 PF13894.6 gi|327311591|ref|YP_004338488.1| - 0.12 13.3 1.7 16 6.6 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger Terminase_GpA PF05876.12 gi|327311591|ref|YP_004338488.1| - 0.14 10.7 0.2 0.14 10.7 0.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Rubredoxin_2 PF18073.1 gi|327311591|ref|YP_004338488.1| - 0.14 11.9 1.4 0.14 11.9 1.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain FdhE PF04216.12 gi|327311591|ref|YP_004338488.1| - 0.18 11.6 0.7 0.2 11.5 0.7 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation OrfB_Zn_ribbon PF07282.11 gi|327311591|ref|YP_004338488.1| - 0.29 11.1 1.9 0.96 9.4 1.9 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|327311591|ref|YP_004338488.1| - 0.52 9.8 2.8 3.4 7.2 0.1 2.2 1 1 0 2 2 2 0 Mu-like prophage protein Com zinc_ribbon_10 PF10058.9 gi|327311591|ref|YP_004338488.1| - 0.63 9.8 3.5 6.5 6.6 3.5 2.0 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF86 PF01934.17 gi|327311592|ref|YP_004338489.1| - 0.013 15.4 0.0 0.013 15.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF86 Dzip-like_N PF13815.6 gi|327311592|ref|YP_004338489.1| - 0.098 12.6 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal Polbeta PF18765.1 gi|327311593|ref|YP_004338490.1| - 3.1e-06 27.2 0.0 4.5e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Toprim_3 PF13362.6 gi|327311593|ref|YP_004338490.1| - 0.022 15.1 0.4 0.26 11.7 0.4 2.1 1 1 0 1 1 1 0 Toprim domain Spore_YhcN_YlaJ PF09580.10 gi|327311593|ref|YP_004338490.1| - 0.035 14.2 0.0 0.046 13.8 0.0 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) PaREP1 PF05942.11 gi|327311594|ref|YP_004338491.1| - 1.2e-26 92.9 7.0 1.7e-26 92.4 7.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PIN_10 PF18478.1 gi|327311594|ref|YP_004338491.1| - 0.088 13.0 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 PIN like domain TPP_enzyme_C PF02775.21 gi|327311597|ref|YP_004338494.1| - 6.3e-22 78.0 0.2 9.7e-22 77.4 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|327311597|ref|YP_004338494.1| - 0.0008 18.7 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase POR_N PF01855.19 gi|327311598|ref|YP_004338495.1| - 8.6e-71 238.3 0.2 1.1e-70 238.0 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|327311598|ref|YP_004338495.1| - 2.2e-27 95.3 0.1 4.4e-27 94.4 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|327311598|ref|YP_004338495.1| - 3.2e-07 30.3 0.0 6.6e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|327311599|ref|YP_004338496.1| - 6.8e-14 51.0 16.3 1.4e-07 31.0 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|327311599|ref|YP_004338496.1| - 7.1e-11 41.7 12.5 2.9e-05 23.9 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327311599|ref|YP_004338496.1| - 1.9e-10 40.7 9.1 2.3e-10 40.5 9.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327311599|ref|YP_004338496.1| - 1.5e-09 38.3 8.5 2.1e-09 37.8 8.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327311599|ref|YP_004338496.1| - 5.8e-09 36.0 6.8 7.6e-09 35.6 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327311599|ref|YP_004338496.1| - 2.3e-08 33.6 10.4 0.00054 19.9 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|327311599|ref|YP_004338496.1| - 4.1e-08 34.0 9.4 0.00064 20.6 3.1 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|327311599|ref|YP_004338496.1| - 3.3e-07 30.3 21.3 3.1e-05 24.0 11.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327311599|ref|YP_004338496.1| - 7.7e-06 26.4 4.2 0.048 14.2 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|327311599|ref|YP_004338496.1| - 9.8e-06 26.0 9.0 0.00038 20.9 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|327311599|ref|YP_004338496.1| - 1.9e-05 25.3 9.9 0.027 15.2 2.4 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|327311599|ref|YP_004338496.1| - 0.0014 19.1 11.7 0.75 10.3 11.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|327311599|ref|YP_004338496.1| - 0.025 15.1 13.9 0.12 13.0 2.3 2.2 1 1 1 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|327311599|ref|YP_004338496.1| - 0.026 14.7 7.6 0.073 13.3 7.6 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|327311599|ref|YP_004338496.1| - 0.033 15.0 11.3 0.27 12.1 2.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|327311599|ref|YP_004338496.1| - 3 8.0 8.5 4.9 7.4 6.0 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR PF01558.18 gi|327311600|ref|YP_004338497.1| - 1.5e-24 87.0 4.3 5.7e-24 85.1 4.3 1.7 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Glyco_hydro_57 PF03065.15 gi|327311601|ref|YP_004338498.1| - 2.3e-37 128.9 0.1 7.5e-34 117.4 0.1 2.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 SBP_bac_8 PF13416.6 gi|327311602|ref|YP_004338499.1| - 3e-20 73.2 9.9 4.8e-20 72.5 9.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF2771 PF10969.8 gi|327311602|ref|YP_004338499.1| - 0.067 13.2 0.2 0.13 12.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) Exog_C PF18026.1 gi|327311602|ref|YP_004338499.1| - 0.13 12.4 0.0 0.49 10.5 0.0 1.9 2 0 0 2 2 2 0 Endo/exonuclease (EXOG) C-terminal domain SKG6 PF08693.10 gi|327311602|ref|YP_004338499.1| - 0.21 11.0 5.5 0.55 9.7 5.5 1.7 1 0 0 1 1 1 0 Transmembrane alpha-helix domain BPD_transp_1 PF00528.22 gi|327311603|ref|YP_004338500.1| - 2.6e-15 56.6 24.7 2.6e-15 56.6 24.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|327311603|ref|YP_004338500.1| - 0.0064 16.6 3.6 0.019 15.1 3.6 1.8 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters BPD_transp_1 PF00528.22 gi|327311604|ref|YP_004338501.1| - 1.8e-17 63.6 22.2 1.8e-17 63.6 22.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component UDPG_MGDP_dh_N PF03721.14 gi|327311605|ref|YP_004338502.1| - 2.7e-38 131.4 0.5 4.3e-38 130.8 0.5 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|327311605|ref|YP_004338502.1| - 2.5e-24 85.7 0.0 6.6e-24 84.4 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|327311605|ref|YP_004338502.1| - 1.1e-20 73.6 0.0 2.3e-20 72.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain 2-Hacid_dh_C PF02826.19 gi|327311605|ref|YP_004338502.1| - 0.0004 19.8 0.1 0.094 12.1 0.1 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|327311605|ref|YP_004338502.1| - 0.0016 18.6 0.7 0.012 15.8 0.7 2.3 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|327311605|ref|YP_004338502.1| - 0.0043 17.0 1.2 0.012 15.5 1.2 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|327311605|ref|YP_004338502.1| - 0.0069 16.3 0.4 0.039 13.8 0.4 2.4 1 0 0 1 1 1 1 Rossmann-like domain F420_oxidored PF03807.17 gi|327311605|ref|YP_004338502.1| - 0.0096 16.5 8.7 0.52 10.9 1.0 4.1 4 1 1 5 5 4 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|327311605|ref|YP_004338502.1| - 0.023 13.9 0.9 0.051 12.8 0.9 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|327311605|ref|YP_004338502.1| - 0.036 14.3 4.7 0.057 13.7 0.5 2.8 3 0 0 3 3 2 0 TrkA-N domain ADH_zinc_N PF00107.26 gi|327311605|ref|YP_004338502.1| - 0.052 13.5 0.7 0.16 12.0 0.7 1.8 1 0 0 1 1 1 0 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|327311605|ref|YP_004338502.1| - 0.058 12.7 2.0 0.14 11.5 2.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|327311605|ref|YP_004338502.1| - 0.062 13.3 2.2 4.1 7.4 0.0 2.9 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Urocanase PF01175.18 gi|327311605|ref|YP_004338502.1| - 0.073 12.7 0.3 0.14 11.8 0.3 1.4 1 0 0 1 1 1 0 Urocanase Rossmann-like domain AAA_31 PF13614.6 gi|327311605|ref|YP_004338502.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|327311605|ref|YP_004338502.1| - 0.18 11.8 0.0 0.36 10.9 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain UPF0146 PF03686.13 gi|327311605|ref|YP_004338502.1| - 0.42 10.5 3.3 2.1 8.2 0.0 3.1 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0146) Pyr_redox PF00070.27 gi|327311605|ref|YP_004338502.1| - 0.84 10.2 7.3 0.88 10.2 3.3 2.8 2 2 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Peripla_BP_2 PF01497.18 gi|327311606|ref|YP_004338503.1| - 2.7e-09 37.0 0.0 3.8e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein DUF711 PF05167.12 gi|327311607|ref|YP_004338504.1| - 2e-33 115.9 0.0 3.2e-33 115.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) AGOG PF09171.10 gi|327311608|ref|YP_004338505.1| - 2.5e-06 27.0 0.0 3.8e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase HTH_10 PF04967.12 gi|327311608|ref|YP_004338505.1| - 0.047 13.5 0.1 6.3 6.7 0.0 3.3 3 0 0 3 3 3 0 HTH DNA binding domain EndIII_4Fe-2S PF10576.9 gi|327311608|ref|YP_004338505.1| - 0.23 11.8 3.8 0.38 11.2 3.8 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III PTPS PF01242.19 gi|327311609|ref|YP_004338506.1| - 1.1e-08 35.1 0.0 1.3e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase IlvN PF07991.12 gi|327311610|ref|YP_004338507.1| - 6.8e-45 152.6 0.0 9.8e-45 152.1 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|327311610|ref|YP_004338507.1| - 9.6e-21 74.6 0.0 1.3e-20 74.1 0.0 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|327311610|ref|YP_004338507.1| - 6.1e-08 32.2 0.0 1e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|327311610|ref|YP_004338507.1| - 5.7e-07 30.0 0.0 1.2e-06 29.0 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|327311610|ref|YP_004338507.1| - 2.7e-06 27.6 0.0 4.7e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|327311610|ref|YP_004338507.1| - 8.1e-06 26.0 0.0 1.3e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.18 gi|327311610|ref|YP_004338507.1| - 0.021 14.7 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|327311610|ref|YP_004338507.1| - 0.095 13.0 0.1 0.25 11.6 0.1 1.8 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|327311610|ref|YP_004338507.1| - 0.11 12.9 0.0 0.21 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiS PF02597.20 gi|327311611|ref|YP_004338508.1| - 1.6e-08 35.1 0.0 1.9e-08 34.8 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|327311611|ref|YP_004338508.1| - 0.034 14.2 0.4 1.4 9.1 0.4 2.5 1 1 0 1 1 1 0 TGS domain AFOR_C PF01314.18 gi|327311612|ref|YP_004338509.1| - 9.4e-113 377.1 0.0 1.2e-112 376.7 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|327311612|ref|YP_004338509.1| - 7.1e-70 234.9 0.3 1.2e-69 234.1 0.3 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|327311613|ref|YP_004338510.1| - 1.9e-19 70.1 0.0 2.1e-19 69.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|327311613|ref|YP_004338510.1| - 0.00035 20.6 0.7 0.013 15.5 0.7 2.4 1 1 0 1 1 1 1 TGS domain Urm1 PF09138.11 gi|327311613|ref|YP_004338510.1| - 0.004 17.5 0.0 0.0043 17.4 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS-like PF14453.6 gi|327311613|ref|YP_004338510.1| - 0.091 12.8 0.1 1.4 9.1 0.0 2.5 2 1 0 2 2 2 0 ThiS-like ubiquitin RHH_1 PF01402.21 gi|327311614|ref|YP_004338511.1| - 0.00022 21.0 0.0 0.00029 20.6 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Fumerase PF05681.14 gi|327311615|ref|YP_004338512.1| - 1.4e-82 277.2 0.0 1.6e-82 277.0 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.12 gi|327311616|ref|YP_004338513.1| - 3.7e-50 170.1 0.1 4.5e-50 169.8 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Acetyltransf_3 PF13302.7 gi|327311617|ref|YP_004338514.1| - 7.8e-06 26.6 0.0 9e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|327311617|ref|YP_004338514.1| - 0.00055 20.2 0.1 0.00068 19.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|327311617|ref|YP_004338514.1| - 0.027 14.9 0.2 0.056 13.9 0.0 1.7 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FBPase_3 PF01950.16 gi|327311618|ref|YP_004338515.1| - 2e-175 583.2 0.0 2.5e-175 582.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase AMP-binding PF00501.28 gi|327311619|ref|YP_004338516.1| - 2.1e-94 316.5 0.0 2.6e-94 316.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|327311619|ref|YP_004338516.1| - 7.6e-30 103.7 0.5 3e-29 101.8 0.2 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|327311619|ref|YP_004338516.1| - 9.2e-21 73.5 2.7 9.2e-21 73.5 2.7 2.3 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Gpr1_Fun34_YaaH PF01184.19 gi|327311620|ref|YP_004338517.1| - 4.2e-35 121.2 36.1 2.9e-34 118.5 36.1 1.9 1 1 0 1 1 1 1 GPR1/FUN34/yaaH family gag-asp_proteas PF13975.6 gi|327311621|ref|YP_004338518.1| - 5.6e-07 30.0 0.0 7.9e-07 29.6 0.0 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|327311621|ref|YP_004338518.1| - 5.7e-07 30.1 0.0 7.1e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.20 gi|327311621|ref|YP_004338518.1| - 0.019 15.2 0.0 0.019 15.2 0.0 1.3 1 1 0 1 1 1 0 Retroviral aspartyl protease MarC PF01914.17 gi|327311622|ref|YP_004338519.1| - 7.9e-23 80.9 13.7 1e-22 80.5 13.7 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein POR_N PF01855.19 gi|327311624|ref|YP_004338521.1| - 3.5e-52 177.5 0.1 5.8e-52 176.7 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|327311624|ref|YP_004338521.1| - 3.3e-33 115.2 0.1 9.8e-33 113.7 0.1 1.7 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|327311624|ref|YP_004338521.1| - 9.4e-06 25.9 0.2 0.00057 20.2 0.0 3.1 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|327311625|ref|YP_004338522.1| - 4.5e-29 101.2 0.0 8.7e-29 100.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|327311625|ref|YP_004338522.1| - 1.6e-20 73.0 0.8 3e-20 72.1 0.8 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DAHP_synth_1 PF00793.20 gi|327311626|ref|YP_004338523.1| - 1.3e-71 240.7 0.0 1.7e-71 240.3 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|327311626|ref|YP_004338523.1| - 1.3e-06 28.1 0.0 3.3e-06 26.7 0.0 1.6 1 1 0 1 1 1 1 NeuB family tRNA-synt_1b PF00579.25 gi|327311627|ref|YP_004338524.1| - 5e-36 124.5 0.0 5.3e-34 117.9 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Transketolase_N PF00456.21 gi|327311628|ref|YP_004338525.1| - 3.3e-33 115.0 0.1 7.2e-33 113.9 0.1 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|327311628|ref|YP_004338525.1| - 3.3e-11 42.9 0.3 1.5e-06 27.6 0.2 2.5 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|327311628|ref|YP_004338525.1| - 1.1e-07 31.7 1.7 5.3e-06 26.3 1.7 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|327311628|ref|YP_004338525.1| - 0.00018 20.5 0.0 0.00023 20.2 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component SeleniumBinding PF11524.8 gi|327311628|ref|YP_004338525.1| - 0.12 12.9 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 Selenium binding protein Transket_pyr PF02779.24 gi|327311629|ref|YP_004338526.1| - 1.5e-35 122.4 0.1 3.1e-35 121.4 0.1 1.5 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|327311629|ref|YP_004338526.1| - 8.2e-26 90.3 0.0 1.6e-25 89.4 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|327311629|ref|YP_004338526.1| - 0.0028 17.9 0.0 0.0048 17.2 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II DHQ_synthase PF01761.20 gi|327311630|ref|YP_004338527.1| - 3e-84 282.3 0.1 3.5e-84 282.1 0.1 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|327311630|ref|YP_004338527.1| - 3e-05 23.8 0.8 0.00012 21.9 0.8 1.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|327311630|ref|YP_004338527.1| - 0.002 17.0 1.3 0.013 14.3 0.4 2.4 2 1 0 2 2 2 1 Iron-containing alcohol dehydrogenase DUF1851 PF08906.11 gi|327311630|ref|YP_004338527.1| - 0.11 12.5 0.1 0.38 10.7 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF1851) EPSP_synthase PF00275.20 gi|327311631|ref|YP_004338528.1| - 9.6e-61 205.7 0.0 1.3e-60 205.3 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Aminotran_1_2 PF00155.21 gi|327311632|ref|YP_004338529.1| - 7.2e-37 127.4 0.0 1.8e-36 126.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|327311632|ref|YP_004338529.1| - 5.2e-05 22.3 0.0 8.2e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Allinase Peptidase_S9 PF00326.21 gi|327311633|ref|YP_004338530.1| - 7.9e-53 179.1 0.1 1.4e-52 178.2 0.0 1.5 2 0 0 2 2 2 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|327311633|ref|YP_004338530.1| - 5.2e-10 39.0 2.2 0.013 15.4 0.0 4.5 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|327311633|ref|YP_004338530.1| - 1.2e-09 38.1 0.1 1.7e-06 27.8 0.2 2.4 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|327311633|ref|YP_004338530.1| - 2.8e-09 37.0 0.1 6.6e-09 35.8 0.1 1.6 2 0 0 2 2 2 1 alpha/beta hydrolase fold AXE1 PF05448.12 gi|327311633|ref|YP_004338530.1| - 2.2e-08 33.1 0.6 4.5e-05 22.3 0.1 2.3 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.21 gi|327311633|ref|YP_004338530.1| - 5.4e-05 22.1 0.2 5.8 5.6 0.0 4.3 2 1 1 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Hydrolase_4 PF12146.8 gi|327311633|ref|YP_004338530.1| - 7.4e-05 22.1 0.1 0.14 11.4 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|327311633|ref|YP_004338530.1| - 0.00025 21.7 0.0 0.00025 21.7 0.0 2.2 2 1 1 3 3 3 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|327311633|ref|YP_004338530.1| - 0.00093 19.1 0.0 0.25 11.2 0.0 2.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF2920 PF11144.8 gi|327311633|ref|YP_004338530.1| - 0.0038 16.4 0.0 0.29 10.3 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) ANAPC4_WD40 PF12894.7 gi|327311633|ref|YP_004338530.1| - 0.016 15.5 0.0 18 5.7 0.0 3.1 3 0 0 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Esterase_phd PF10503.9 gi|327311633|ref|YP_004338530.1| - 0.074 12.5 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Esterase PHB depolymerase SGL PF08450.12 gi|327311633|ref|YP_004338530.1| - 0.077 12.6 0.0 0.3 10.6 0.0 2.0 1 1 1 2 2 2 0 SMP-30/Gluconolactonase/LRE-like region DLH PF01738.18 gi|327311633|ref|YP_004338530.1| - 0.16 11.5 0.0 0.69 9.4 0.0 2.0 1 1 0 1 1 1 0 Dienelactone hydrolase family DUF5050 PF16472.5 gi|327311633|ref|YP_004338530.1| - 0.2 10.9 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5050) DHquinase_I PF01487.15 gi|327311634|ref|YP_004338531.1| - 6.8e-51 173.7 0.0 1e-50 173.1 0.0 1.2 1 0 0 1 1 1 1 Type I 3-dehydroquinase CM_2 PF01817.21 gi|327311634|ref|YP_004338531.1| - 3.7e-13 49.6 0.8 5.5e-13 49.1 0.2 1.7 2 0 0 2 2 2 1 Chorismate mutase type II Shikimate_dh_N PF08501.11 gi|327311635|ref|YP_004338532.1| - 2.8e-23 82.0 0.0 7e-23 80.7 0.0 1.7 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|327311635|ref|YP_004338532.1| - 5.2e-11 42.1 0.0 1.2e-10 40.9 0.0 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|327311635|ref|YP_004338532.1| - 1.6e-10 41.1 0.0 3.4e-10 40.1 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|327311635|ref|YP_004338532.1| - 3e-06 27.7 1.2 7.3e-06 26.5 0.7 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|327311635|ref|YP_004338532.1| - 6.7e-05 23.2 1.0 0.00019 21.7 1.0 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|327311635|ref|YP_004338532.1| - 0.00077 19.9 0.1 0.0014 19.1 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding OCD_Mu_crystall PF02423.15 gi|327311635|ref|YP_004338532.1| - 0.0078 15.2 0.1 0.013 14.4 0.1 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family adh_short PF00106.25 gi|327311635|ref|YP_004338532.1| - 0.0085 15.6 0.4 0.03 13.8 0.5 1.9 2 0 0 2 2 2 1 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|327311635|ref|YP_004338532.1| - 0.01 15.1 1.9 0.01 15.1 1.9 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ADH_zinc_N PF00107.26 gi|327311635|ref|YP_004338532.1| - 0.046 13.7 1.4 0.12 12.4 0.4 2.2 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Asparaginase_C PF17763.1 gi|327311635|ref|YP_004338532.1| - 0.17 12.1 3.5 10 6.4 0.6 2.2 1 1 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain Chorismate_synt PF01264.21 gi|327311636|ref|YP_004338533.1| - 9.3e-120 399.2 0.0 1e-119 399.1 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase GHMP_kinases_N PF00288.26 gi|327311637|ref|YP_004338534.1| - 1.1e-10 41.5 3.0 1.1e-10 41.5 3.0 2.1 2 0 0 2 2 2 1 GHMP kinases N terminal domain Glyco_hydro_31 PF01055.26 gi|327311638|ref|YP_004338535.1| - 1.1e-134 449.9 0.0 1.4e-134 449.7 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|327311638|ref|YP_004338535.1| - 1.1e-15 57.7 0.0 2.7e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 Galactose mutarotase-like GHL10 PF02638.15 gi|327311638|ref|YP_004338535.1| - 0.0021 17.2 0.1 0.01 14.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase-like 10 GHL15 PF14885.6 gi|327311638|ref|YP_004338535.1| - 0.025 14.5 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 GHL6 PF14871.6 gi|327311638|ref|YP_004338535.1| - 0.16 12.1 0.0 2.5 8.2 0.0 2.7 2 1 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 Alpha-amylase PF00128.24 gi|327311639|ref|YP_004338536.1| - 5.1e-33 115.0 0.0 1.7e-32 113.4 0.0 1.7 1 1 0 1 1 1 1 Alpha amylase, catalytic domain AMPK1_CBM PF16561.5 gi|327311639|ref|YP_004338536.1| - 0.13 12.4 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Glycogen recognition site of AMP-activated protein kinase DUF2175 PF09943.9 gi|327311640|ref|YP_004338537.1| - 1.2e-32 112.1 0.2 1.4e-32 111.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) IF2_N PF04760.15 gi|327311640|ref|YP_004338537.1| - 0.042 13.7 0.1 0.062 13.1 0.1 1.3 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region Vps39_2 PF10367.9 gi|327311640|ref|YP_004338537.1| - 0.14 12.7 0.2 0.25 11.8 0.2 1.4 1 0 0 1 1 1 0 Vacuolar sorting protein 39 domain 2 Inhibitor_I9 PF05922.16 gi|327311640|ref|YP_004338537.1| - 0.15 12.7 0.2 0.39 11.4 0.2 1.8 1 1 0 1 1 1 0 Peptidase inhibitor I9 CCDC84 PF14968.6 gi|327311640|ref|YP_004338537.1| - 0.23 11.0 0.1 0.24 11.0 0.1 1.1 1 0 0 1 1 1 0 Coiled coil protein 84 Ribosomal_L3 PF00297.22 gi|327311641|ref|YP_004338538.1| - 9.9e-72 241.9 0.0 2.8e-71 240.4 0.0 1.6 1 1 0 1 1 1 1 Ribosomal protein L3 PIN PF01850.21 gi|327311642|ref|YP_004338539.1| - 2.2e-13 50.8 0.5 1e-12 48.6 0.5 1.8 1 1 0 1 1 1 1 PIN domain Ribosomal_L4 PF00573.22 gi|327311644|ref|YP_004338541.1| - 9.5e-42 142.9 0.0 1.1e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|327311645|ref|YP_004338542.1| - 1.3e-15 57.5 2.0 9.1e-15 54.8 2.0 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 TusA PF01206.17 gi|327311645|ref|YP_004338542.1| - 0.12 12.2 0.5 0.15 11.9 0.5 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA zf-RRN7 PF11781.8 gi|327311646|ref|YP_004338543.1| - 0.0038 16.9 1.0 0.045 13.4 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prok-RING_1 PF14446.6 gi|327311646|ref|YP_004338543.1| - 0.0048 16.8 0.7 0.0096 15.8 0.7 1.5 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 RNA_POL_M_15KD PF02150.16 gi|327311646|ref|YP_004338543.1| - 0.0056 16.5 1.9 0.0093 15.8 1.9 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|327311646|ref|YP_004338543.1| - 0.0057 16.7 3.3 0.047 13.8 3.3 2.1 1 1 0 1 1 1 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|327311646|ref|YP_004338543.1| - 0.0082 16.1 0.7 0.013 15.4 0.7 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|327311646|ref|YP_004338543.1| - 0.0085 16.0 2.5 0.29 11.2 0.1 2.2 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|327311646|ref|YP_004338543.1| - 0.012 15.0 1.0 2.2 7.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|327311646|ref|YP_004338543.1| - 0.013 15.5 0.1 0.022 14.8 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|327311646|ref|YP_004338543.1| - 0.023 14.6 0.3 0.036 14.1 0.3 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|327311646|ref|YP_004338543.1| - 0.025 14.3 2.1 0.059 13.1 2.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|327311646|ref|YP_004338543.1| - 0.026 14.6 0.4 0.047 13.7 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|327311646|ref|YP_004338543.1| - 0.029 13.9 2.7 0.25 10.9 3.2 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.11 gi|327311646|ref|YP_004338543.1| - 0.037 14.2 1.0 0.14 12.3 1.0 1.8 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|327311646|ref|YP_004338543.1| - 0.048 13.8 3.7 0.048 13.8 3.7 1.8 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-FPG_IleRS PF06827.14 gi|327311646|ref|YP_004338543.1| - 0.094 12.6 0.9 6.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.11 gi|327311646|ref|YP_004338543.1| - 0.2 11.3 4.0 0.67 9.7 4.0 1.9 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|327311646|ref|YP_004338543.1| - 0.21 11.5 3.5 6.5 6.8 0.6 2.4 2 0 0 2 2 2 0 Nudix N-terminal Ogr_Delta PF04606.12 gi|327311646|ref|YP_004338543.1| - 0.27 11.2 2.1 4.8 7.2 0.2 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.6 gi|327311646|ref|YP_004338543.1| - 0.82 9.6 3.5 3.9 7.5 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|327311646|ref|YP_004338543.1| - 1 9.2 4.8 2.1 8.2 0.7 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_ribbon_recom PF13408.6 gi|327311646|ref|YP_004338543.1| - 1.5 9.4 5.0 5.7 7.5 0.9 2.4 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DNA_ligase_ZBD PF03119.16 gi|327311646|ref|YP_004338543.1| - 2 8.5 8.6 0.95 9.5 0.3 3.2 4 0 0 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF2067 PF09840.9 gi|327311647|ref|YP_004338544.1| - 9.1e-40 136.2 0.1 1e-39 136.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF4974 PF16344.5 gi|327311647|ref|YP_004338544.1| - 0.052 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) BMC PF00936.19 gi|327311647|ref|YP_004338544.1| - 0.086 12.8 0.2 0.47 10.5 0.0 2.1 2 0 0 2 2 2 0 BMC domain RNA_pol_L_2 PF13656.6 gi|327311648|ref|YP_004338545.1| - 3.3e-16 58.8 0.0 3.8e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|327311648|ref|YP_004338545.1| - 0.16 11.4 0.0 0.31 10.5 0.0 1.7 1 1 0 1 1 1 0 RNA polymerase Rpb3/Rpb11 dimerisation domain Methyltransf_25 PF13649.6 gi|327311649|ref|YP_004338546.1| - 3.1e-06 27.8 0.8 6.4e-06 26.8 0.7 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|327311649|ref|YP_004338546.1| - 7.8e-06 25.5 0.8 2.1e-05 24.2 0.8 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|327311649|ref|YP_004338546.1| - 2.8e-05 24.0 0.7 4.3e-05 23.3 0.7 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327311649|ref|YP_004338546.1| - 0.00011 22.7 0.1 0.0002 21.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327311649|ref|YP_004338546.1| - 0.00069 20.3 0.4 0.0012 19.5 0.4 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|327311649|ref|YP_004338546.1| - 0.0017 17.8 0.2 0.0024 17.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|327311649|ref|YP_004338546.1| - 0.12 12.4 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain EMG1 PF03587.14 gi|327311651|ref|YP_004338548.1| - 3.3e-42 144.4 0.0 3.7e-42 144.2 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase DUF996 PF06195.13 gi|327311652|ref|YP_004338549.1| - 0.0002 21.6 29.2 0.031 14.6 15.3 2.4 1 1 2 3 3 3 2 Protein of unknown function (DUF996) SUR7 PF06687.12 gi|327311652|ref|YP_004338549.1| - 0.64 9.6 23.8 0.028 14.1 4.0 3.0 1 1 2 3 3 3 0 SUR7/PalI family FixP_N PF14715.6 gi|327311652|ref|YP_004338549.1| - 4.2 7.2 0.0 4.2 7.2 0.0 4.1 4 0 0 4 4 4 0 N-terminal domain of cytochrome oxidase-cbb3, FixP TruB_N PF01509.18 gi|327311653|ref|YP_004338550.1| - 0.039 14.3 0.0 2.9 8.2 0.0 2.1 2 0 0 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) Sec61_beta PF03911.16 gi|327311654|ref|YP_004338551.1| - 1.9e-12 47.0 0.3 2.2e-12 46.8 0.3 1.1 1 0 0 1 1 1 1 Sec61beta family TatD_DNase PF01026.21 gi|327311655|ref|YP_004338552.1| - 4.6e-21 75.3 0.0 5.9e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Phage_TAC_11 PF11836.8 gi|327311655|ref|YP_004338552.1| - 0.073 13.2 0.4 0.37 10.9 0.1 2.1 2 0 0 2 2 2 0 Phage tail tube protein, GTA-gp10 DegT_DnrJ_EryC1 PF01041.17 gi|327311657|ref|YP_004338554.1| - 1.1e-114 383.5 0.0 1.9e-114 382.8 0.0 1.3 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|327311657|ref|YP_004338554.1| - 1.4e-08 34.1 0.1 2.1e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|327311657|ref|YP_004338554.1| - 7.9e-08 31.8 0.1 2.3e-07 30.4 0.1 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|327311657|ref|YP_004338554.1| - 1.5e-05 23.7 0.1 2.2e-05 23.2 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|327311657|ref|YP_004338554.1| - 4.1e-05 23.0 0.0 5.7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase ALS_ss_C PF10369.9 gi|327311657|ref|YP_004338554.1| - 0.0026 17.9 0.1 0.011 15.9 0.0 2.0 2 0 0 2 2 2 1 Small subunit of acetolactate synthase OKR_DC_1 PF01276.20 gi|327311657|ref|YP_004338554.1| - 0.012 14.4 0.1 0.017 13.9 0.1 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF5044 PF16447.5 gi|327311657|ref|YP_004338554.1| - 0.035 14.0 0.0 0.055 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5044) Pribosyltran PF00156.27 gi|327311659|ref|YP_004338556.1| - 4.2e-19 68.6 0.0 6.4e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain RXT2_N PF08595.11 gi|327311659|ref|YP_004338556.1| - 0.0068 16.4 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 RXT2-like, N-terminal Peptidase_S24 PF00717.23 gi|327311660|ref|YP_004338557.1| - 7.8e-06 25.8 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like SCFA_trans PF02667.14 gi|327311660|ref|YP_004338557.1| - 0.04 12.9 0.9 0.06 12.3 0.9 1.2 1 0 0 1 1 1 0 Short chain fatty acid transporter Cpn60_TCP1 PF00118.24 gi|327311661|ref|YP_004338558.1| - 4.6e-180 599.4 7.4 5.2e-180 599.3 7.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family RNA_pol_Rpb6 PF01192.22 gi|327311662|ref|YP_004338559.1| - 2.9e-13 49.5 0.0 4.6e-13 48.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 DDE_Tnp_1_4 PF13701.6 gi|327311662|ref|YP_004338559.1| - 0.0073 14.6 0.0 0.0078 14.5 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain group 1 Baculo_p47 PF05112.12 gi|327311662|ref|YP_004338559.1| - 0.019 14.6 0.0 0.023 14.3 0.0 1.0 1 0 0 1 1 1 0 Baculovirus P47 protein Flavin_Reduct PF01613.18 gi|327311664|ref|YP_004338561.1| - 4.8e-25 88.4 0.0 5.6e-25 88.2 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain FeS_assembly_P PF01883.19 gi|327311665|ref|YP_004338562.1| - 6.2e-15 55.1 0.7 8.9e-15 54.6 0.7 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein RtcR PF06956.11 gi|327311665|ref|YP_004338562.1| - 0.14 11.5 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Regulator of RNA terminal phosphate cyclase Pribosyltran PF00156.27 gi|327311666|ref|YP_004338563.1| - 2.9e-12 46.4 0.3 4.6e-12 45.7 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|327311666|ref|YP_004338563.1| - 1.4e-06 28.2 0.5 4.8e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|327311666|ref|YP_004338563.1| - 0.0035 17.7 1.8 0.03 14.7 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|327311666|ref|YP_004338563.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_26 PF13443.6 gi|327311666|ref|YP_004338563.1| - 0.1 13.1 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MqsA_antitoxin PF15731.5 gi|327311666|ref|YP_004338563.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA PALP PF00291.25 gi|327311667|ref|YP_004338564.1| - 1.1e-05 25.0 0.8 0.0012 18.3 0.7 2.6 1 1 2 3 3 3 3 Pyridoxal-phosphate dependent enzyme PDH PF02153.17 gi|327311668|ref|YP_004338565.1| - 2.5e-09 36.5 0.0 3.1e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|327311668|ref|YP_004338565.1| - 0.0017 18.9 2.7 0.097 13.3 1.8 3.0 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.6 gi|327311669|ref|YP_004338566.1| - 4.7e-18 65.3 0.4 7.7e-18 64.7 0.4 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|327311669|ref|YP_004338566.1| - 3.3e-12 46.8 0.1 8e-12 45.6 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|327311669|ref|YP_004338566.1| - 1.7e-06 28.3 0.0 2.8e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|327311669|ref|YP_004338566.1| - 1.6e-05 24.5 0.0 3.4e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|327311669|ref|YP_004338566.1| - 9.7e-05 21.8 0.0 0.00013 21.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|327311669|ref|YP_004338566.1| - 0.00084 19.0 0.4 0.003 17.2 0.4 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|327311669|ref|YP_004338566.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 0 Rossmann-like domain ADH_N PF08240.12 gi|327311670|ref|YP_004338567.1| - 9.5e-33 112.4 0.1 1.7e-32 111.6 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|327311670|ref|YP_004338567.1| - 9.2e-23 80.7 0.1 1.4e-22 80.0 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|327311670|ref|YP_004338567.1| - 1.7e-11 45.3 0.2 6.3e-11 43.5 0.0 1.9 1 1 1 2 2 2 1 Zinc-binding dehydrogenase LDcluster4 PF18306.1 gi|327311670|ref|YP_004338567.1| - 0.0048 16.5 0.8 0.0078 15.8 0.8 1.3 1 0 0 1 1 1 1 SLOG cluster4 family ACP_syn_III_C PF08541.10 gi|327311670|ref|YP_004338567.1| - 0.019 15.2 0.3 0.04 14.1 0.3 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NAD_binding_10 PF13460.6 gi|327311670|ref|YP_004338567.1| - 0.02 14.8 0.5 0.036 14.0 0.5 1.4 1 0 0 1 1 1 0 NAD(P)H-binding zf-RRN7 PF11781.8 gi|327311671|ref|YP_004338568.1| - 7.7e-08 31.9 0.5 1.3e-07 31.1 0.5 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TF_Zn_Ribbon PF08271.12 gi|327311671|ref|YP_004338568.1| - 7.3e-05 22.2 2.0 0.00013 21.4 2.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|327311671|ref|YP_004338568.1| - 0.021 14.9 0.8 0.71 10.0 0.0 2.5 2 0 0 2 2 2 0 Transcription factor TFIIB repeat RPA_interact_C PF14768.6 gi|327311671|ref|YP_004338568.1| - 0.076 13.6 0.3 0.15 12.6 0.2 1.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Prim_Zn_Ribbon PF08273.12 gi|327311671|ref|YP_004338568.1| - 0.078 13.3 5.7 0.64 10.4 5.7 2.3 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.6 gi|327311671|ref|YP_004338568.1| - 0.079 13.3 0.2 0.16 12.4 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.6 gi|327311671|ref|YP_004338568.1| - 0.12 12.3 0.6 0.25 11.3 0.6 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|327311671|ref|YP_004338568.1| - 0.2 11.6 0.5 0.39 10.7 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|327311671|ref|YP_004338568.1| - 0.24 11.3 6.3 7.2 6.6 0.1 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|327311671|ref|YP_004338568.1| - 0.86 9.1 3.5 8.8 5.9 3.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain PcrB PF01884.17 gi|327311673|ref|YP_004338570.1| - 5.2e-51 173.3 0.0 6.6e-51 172.9 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|327311673|ref|YP_004338570.1| - 4.9e-05 22.9 0.0 9.2e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Elf1 PF05129.13 gi|327311674|ref|YP_004338571.1| - 3.8e-14 52.5 0.1 4.5e-14 52.3 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|327311674|ref|YP_004338571.1| - 0.0023 18.3 0.5 0.0041 17.5 0.5 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|327311674|ref|YP_004338571.1| - 0.014 15.1 0.1 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|327311674|ref|YP_004338571.1| - 0.023 14.2 3.4 0.05 13.1 3.4 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|327311674|ref|YP_004338571.1| - 0.027 14.1 2.6 3.9 7.3 0.2 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Rubredoxin PF00301.20 gi|327311674|ref|YP_004338571.1| - 0.037 14.0 0.9 0.096 12.7 0.1 2.0 2 0 0 2 2 2 0 Rubredoxin PhnA_Zn_Ribbon PF08274.12 gi|327311674|ref|YP_004338571.1| - 0.039 13.9 0.5 0.7 9.9 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|327311674|ref|YP_004338571.1| - 0.05 13.7 0.6 0.11 12.6 0.6 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Ribosomal_L32p PF01783.23 gi|327311674|ref|YP_004338571.1| - 0.053 13.8 1.3 0.16 12.2 1.3 1.8 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-ribbon_3 PF13248.6 gi|327311674|ref|YP_004338571.1| - 0.06 12.8 2.1 0.38 10.2 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.11 gi|327311674|ref|YP_004338571.1| - 0.12 12.4 1.2 0.12 12.4 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.7 gi|327311674|ref|YP_004338571.1| - 0.22 11.5 1.8 0.66 10.0 1.9 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain VP_N-CPKC PF11475.8 gi|327311674|ref|YP_004338571.1| - 0.22 11.4 1.1 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 Virion protein N terminal domain zf-NADH-PPase PF09297.11 gi|327311674|ref|YP_004338571.1| - 0.41 10.3 2.7 3 7.6 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|327311674|ref|YP_004338571.1| - 4.3 7.4 5.7 8.5 6.4 0.5 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Inositol_P PF00459.25 gi|327311675|ref|YP_004338572.1| - 2e-18 66.9 0.0 2.9e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|327311675|ref|YP_004338572.1| - 0.0054 16.2 0.0 0.0099 15.4 0.0 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain SWIM PF04434.17 gi|327311676|ref|YP_004338573.1| - 2.4e-05 23.9 0.1 3.4e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger HD PF01966.22 gi|327311678|ref|YP_004338575.1| - 7e-09 36.0 0.3 1.7e-08 34.7 0.3 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|327311678|ref|YP_004338575.1| - 0.07 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 HDOD domain Cons_hypoth95 PF03602.15 gi|327311680|ref|YP_004338577.1| - 3e-08 33.5 0.0 4.6e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|327311680|ref|YP_004338577.1| - 3.2e-06 27.8 0.0 5.5e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327311680|ref|YP_004338577.1| - 2.8e-05 24.7 0.0 5.7e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|327311680|ref|YP_004338577.1| - 0.00014 21.5 0.0 0.00021 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Spermine_synth PF01564.17 gi|327311680|ref|YP_004338577.1| - 0.0084 15.5 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Methyltransf_30 PF05430.11 gi|327311680|ref|YP_004338577.1| - 0.036 13.9 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Peptidase_M24 PF00557.24 gi|327311681|ref|YP_004338578.1| - 3.6e-62 209.8 0.5 4.7e-62 209.4 0.5 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|327311681|ref|YP_004338578.1| - 9.3e-05 23.1 0.0 0.00016 22.3 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain ASCH PF04266.14 gi|327311682|ref|YP_004338579.1| - 3.1e-12 47.0 0.0 3.7e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 ASCH domain MarR_2 PF12802.7 gi|327311684|ref|YP_004338581.1| - 5.7e-08 32.5 0.2 1.3e-07 31.4 0.2 1.5 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|327311684|ref|YP_004338581.1| - 1.4e-07 31.5 0.0 3.6e-07 30.1 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|327311684|ref|YP_004338581.1| - 3.7e-06 26.6 0.0 7.2e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|327311684|ref|YP_004338581.1| - 5.2e-06 26.3 0.1 9.2e-06 25.5 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|327311684|ref|YP_004338581.1| - 1.2e-05 24.7 0.2 2.8e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|327311684|ref|YP_004338581.1| - 2.6e-05 24.0 0.0 0.00054 19.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|327311684|ref|YP_004338581.1| - 4.1e-05 23.9 0.0 5.4e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.6 gi|327311684|ref|YP_004338581.1| - 7.8e-05 23.1 0.1 0.00014 22.3 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|327311684|ref|YP_004338581.1| - 0.00024 20.7 0.0 0.00046 19.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|327311684|ref|YP_004338581.1| - 0.00042 20.4 0.0 0.00066 19.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|327311684|ref|YP_004338581.1| - 0.00055 19.8 0.0 0.00081 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|327311684|ref|YP_004338581.1| - 0.0029 17.7 0.0 0.004 17.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_41 PF14502.6 gi|327311684|ref|YP_004338581.1| - 0.01 15.5 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 gi|327311684|ref|YP_004338581.1| - 0.011 16.0 0.1 0.016 15.4 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein TFIIE_alpha PF02002.17 gi|327311684|ref|YP_004338581.1| - 0.013 15.4 0.1 0.021 14.7 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|327311684|ref|YP_004338581.1| - 0.034 14.1 0.9 0.063 13.3 0.6 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|327311684|ref|YP_004338581.1| - 0.055 13.8 0.1 0.13 12.6 0.1 1.7 1 1 1 2 2 2 0 Transcriptional regulator HTH_DeoR PF08220.12 gi|327311684|ref|YP_004338581.1| - 0.058 13.2 0.2 0.091 12.5 0.2 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RPA_C PF08784.11 gi|327311684|ref|YP_004338581.1| - 0.079 13.6 0.0 0.12 13.1 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_36 PF13730.6 gi|327311684|ref|YP_004338581.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PheRS_DBD2 PF18554.1 gi|327311686|ref|YP_004338583.1| - 0.04 13.9 0.5 0.094 12.7 0.5 1.7 1 0 0 1 1 1 0 PheRS DNA binding domain 2 zf-ribbon_3 PF13248.6 gi|327311687|ref|YP_004338584.1| - 0.00018 20.8 1.0 0.14 11.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|327311687|ref|YP_004338584.1| - 0.0016 18.4 0.1 0.0023 17.9 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbons PhnA_Zn_Ribbon PF08274.12 gi|327311687|ref|YP_004338584.1| - 0.0017 18.3 2.3 0.63 10.0 0.2 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|327311687|ref|YP_004338584.1| - 0.0024 17.5 2.4 0.14 12.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-C2H2_9 PF16293.5 gi|327311687|ref|YP_004338584.1| - 0.0048 16.7 0.6 0.65 9.9 0.1 2.2 2 0 0 2 2 2 1 C2H2 type zinc-finger (1 copy) Zn_ribbon_recom PF13408.6 gi|327311687|ref|YP_004338584.1| - 0.0076 16.7 0.3 0.6 10.7 0.0 2.1 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain Ogr_Delta PF04606.12 gi|327311687|ref|YP_004338584.1| - 0.0099 15.8 1.6 1.7 8.7 0.1 2.2 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zf-ZPR1 PF03367.13 gi|327311687|ref|YP_004338584.1| - 0.01 15.7 0.4 0.011 15.6 0.4 1.0 1 0 0 1 1 1 0 ZPR1 zinc-finger domain Cys_rich_CPXG PF14255.6 gi|327311687|ref|YP_004338584.1| - 0.011 15.6 0.3 2 8.4 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.7 gi|327311687|ref|YP_004338584.1| - 0.011 15.7 0.5 0.041 13.9 0.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_9 PF14369.6 gi|327311687|ref|YP_004338584.1| - 0.014 15.6 0.1 3.3 8.1 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon zf-TFIIB PF13453.6 gi|327311687|ref|YP_004338584.1| - 0.015 14.7 0.3 1.1 8.6 0.1 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-RING_7 PF02591.15 gi|327311687|ref|YP_004338584.1| - 0.015 15.4 0.4 3.7 7.8 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|327311687|ref|YP_004338584.1| - 0.018 15.1 2.2 0.32 11.1 2.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|327311687|ref|YP_004338584.1| - 0.019 14.7 0.7 3.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Nudix_N_2 PF14803.6 gi|327311687|ref|YP_004338584.1| - 0.022 14.6 0.3 1.9 8.5 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Terminase_GpA PF05876.12 gi|327311687|ref|YP_004338584.1| - 0.025 13.1 0.0 0.029 12.9 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zf_UBZ PF18439.1 gi|327311687|ref|YP_004338584.1| - 0.028 14.0 1.3 0.74 9.5 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|327311687|ref|YP_004338584.1| - 0.035 14.0 0.3 0.078 12.9 0.3 1.6 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|327311687|ref|YP_004338584.1| - 0.038 14.7 0.0 0.047 14.4 0.0 1.1 1 0 0 1 1 1 0 zinc-ribbon family YhfH PF14149.6 gi|327311687|ref|YP_004338584.1| - 0.042 13.8 1.5 0.24 11.4 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein zf_C2H2_13 PF18508.1 gi|327311687|ref|YP_004338584.1| - 0.047 13.3 0.0 0.047 13.3 0.0 1.7 2 0 0 2 2 1 0 Zinc finger domain YdjO PF14169.6 gi|327311687|ref|YP_004338584.1| - 0.052 13.3 0.6 0.39 10.5 0.1 2.0 2 0 0 2 2 2 0 Cold-inducible protein YdjO zf-Di19 PF05605.12 gi|327311687|ref|YP_004338584.1| - 0.055 13.8 1.5 0.18 12.1 1.5 1.8 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|327311687|ref|YP_004338584.1| - 0.064 12.8 0.7 3 7.4 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|327311687|ref|YP_004338584.1| - 0.087 12.8 0.4 0.29 11.1 0.4 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|327311687|ref|YP_004338584.1| - 0.088 12.5 0.7 1.5 8.5 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C2H2_4 PF13894.6 gi|327311687|ref|YP_004338584.1| - 0.09 13.7 0.9 9.2 7.4 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF35_N PF12172.8 gi|327311687|ref|YP_004338584.1| - 0.11 12.4 0.7 8.2 6.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|327311687|ref|YP_004338584.1| - 0.13 12.3 5.1 1.3 9.0 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Trm112p PF03966.16 gi|327311687|ref|YP_004338584.1| - 0.15 12.6 1.7 0.52 10.9 1.7 1.7 1 1 0 1 1 1 0 Trm112p-like protein TackOD1 PF18551.1 gi|327311687|ref|YP_004338584.1| - 0.16 11.6 1.6 1.1 8.9 1.6 1.9 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Prok-RING_1 PF14446.6 gi|327311687|ref|YP_004338584.1| - 0.27 11.2 3.0 2.7 8.0 3.0 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.19 gi|327311687|ref|YP_004338584.1| - 0.47 10.3 3.9 2.1 8.2 0.5 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Cys_rich_KTR PF14205.6 gi|327311687|ref|YP_004338584.1| - 0.66 9.8 5.1 3.3 7.6 0.4 2.1 1 1 0 2 2 2 0 Cysteine-rich KTR PsbN PF02468.15 gi|327311688|ref|YP_004338585.1| - 0.034 14.0 0.8 0.034 14.0 0.8 4.4 4 1 1 5 5 5 0 Photosystem II reaction centre N protein (psbN) DUF4149 PF13664.6 gi|327311688|ref|YP_004338585.1| - 2.1 8.7 12.6 0.12 12.7 6.5 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) Laminin_EGF PF00053.24 gi|327311689|ref|YP_004338586.1| - 0.096 12.8 5.0 0.16 12.1 5.0 1.3 1 0 0 1 1 1 0 Laminin EGF domain RimK PF08443.11 gi|327311690|ref|YP_004338587.1| - 3.2e-35 121.4 0.0 4.2e-35 121.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|327311690|ref|YP_004338587.1| - 1.1e-15 57.5 0.0 1.6e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|327311690|ref|YP_004338587.1| - 6.7e-08 32.7 0.0 9.7e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|327311690|ref|YP_004338587.1| - 6.1e-05 22.4 0.0 0.34 10.1 0.0 3.1 2 1 1 3 3 3 2 Sugar-transfer associated ATP-grasp TTL PF03133.15 gi|327311690|ref|YP_004338587.1| - 0.0036 16.5 0.0 0.0089 15.2 0.0 1.6 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_YheCD PF14398.6 gi|327311690|ref|YP_004338587.1| - 0.023 13.9 0.0 2.2 7.5 0.0 2.3 2 0 0 2 2 2 0 YheC/D like ATP-grasp Uso1_p115_C PF04871.13 gi|327311692|ref|YP_004338589.1| - 0.036 14.4 3.8 0.059 13.7 3.8 1.4 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Exonuc_VII_S PF02609.16 gi|327311692|ref|YP_004338589.1| - 0.077 13.1 1.7 0.15 12.1 0.2 2.3 2 0 0 2 2 2 0 Exonuclease VII small subunit DUF4795 PF16043.5 gi|327311692|ref|YP_004338589.1| - 0.1 12.2 7.9 3.3 7.2 7.9 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) CorA PF01544.18 gi|327311692|ref|YP_004338589.1| - 5.3 6.3 10.6 50 3.1 9.9 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein UDG PF03167.19 gi|327311693|ref|YP_004338590.1| - 4.3e-43 147.0 0.0 5.5e-43 146.6 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2070 PF09843.9 gi|327311695|ref|YP_004338592.1| - 3.8e-92 309.4 1.1 7e-92 308.5 1.1 1.4 1 1 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2153 PF09921.9 gi|327311696|ref|YP_004338593.1| - 2.3e-40 137.2 0.0 2.8e-40 136.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF4635 PF15466.6 gi|327311696|ref|YP_004338593.1| - 0.024 14.2 0.0 0.27 10.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4635) HisKA PF00512.25 gi|327311696|ref|YP_004338593.1| - 0.028 14.4 0.0 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain CagZ PF09053.10 gi|327311696|ref|YP_004338593.1| - 0.043 13.4 0.0 0.93 9.1 0.0 2.0 2 0 0 2 2 2 0 CagZ DUF1912 PF08930.10 gi|327311696|ref|YP_004338593.1| - 0.065 13.4 0.2 14 5.9 0.0 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1912) DUF3047 PF11249.8 gi|327311696|ref|YP_004338593.1| - 0.074 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3047) Glutaredoxin PF00462.24 gi|327311696|ref|YP_004338593.1| - 0.19 11.9 0.0 0.47 10.7 0.0 1.6 1 0 0 1 1 1 0 Glutaredoxin Met_10 PF02475.16 gi|327311697|ref|YP_004338594.1| - 7.7e-53 179.2 0.0 9.6e-53 178.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|327311697|ref|YP_004338594.1| - 0.0013 18.3 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.16 gi|327311697|ref|YP_004338594.1| - 0.011 15.0 0.0 0.013 14.7 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|327311697|ref|YP_004338594.1| - 0.024 14.3 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|327311697|ref|YP_004338594.1| - 0.076 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF4112 PF13430.6 gi|327311697|ref|YP_004338594.1| - 0.14 12.5 0.0 0.26 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) DUF2064 PF09837.9 gi|327311697|ref|YP_004338594.1| - 0.14 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) tRNA_U5-meth_tr PF05958.11 gi|327311697|ref|YP_004338594.1| - 0.14 11.1 0.0 0.2 10.6 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase ADH_zinc_N PF00107.26 gi|327311697|ref|YP_004338594.1| - 0.17 11.9 0.0 0.39 10.7 0.0 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Rad51 PF08423.11 gi|327311698|ref|YP_004338595.1| - 4.7e-96 321.0 0.0 5.7e-96 320.7 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|327311698|ref|YP_004338595.1| - 1.9e-13 50.5 0.1 2.8e-13 49.9 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|327311698|ref|YP_004338595.1| - 3.5e-12 46.2 0.0 8.5e-12 44.9 0.0 1.8 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|327311698|ref|YP_004338595.1| - 6.8e-10 38.8 0.2 1.2e-09 38.0 0.1 1.4 1 1 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|327311698|ref|YP_004338595.1| - 8.8e-08 32.6 0.5 8.8e-08 32.6 0.5 2.7 3 0 0 3 3 2 1 Helix-hairpin-helix domain DnaB_C PF03796.15 gi|327311698|ref|YP_004338595.1| - 7.6e-05 22.2 3.0 0.097 12.0 0.0 2.8 1 1 2 3 3 3 2 DnaB-like helicase C terminal domain DUF1805 PF08827.11 gi|327311698|ref|YP_004338595.1| - 0.0028 18.0 0.2 0.36 11.2 0.1 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF1805) BAF PF02961.14 gi|327311698|ref|YP_004338595.1| - 0.0054 17.1 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Barrier to autointegration factor AAA_22 PF13401.6 gi|327311698|ref|YP_004338595.1| - 0.0086 16.3 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|327311698|ref|YP_004338595.1| - 0.011 16.3 0.0 0.043 14.4 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|327311698|ref|YP_004338595.1| - 0.019 14.7 0.0 0.057 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF1318 PF07027.12 gi|327311698|ref|YP_004338595.1| - 0.026 15.0 0.4 2.1 8.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1318) IMS_HHH PF11798.8 gi|327311698|ref|YP_004338595.1| - 0.037 14.3 0.0 0.086 13.2 0.0 1.6 1 0 0 1 1 1 0 IMS family HHH motif ABC_tran PF00005.27 gi|327311698|ref|YP_004338595.1| - 0.045 14.3 0.0 0.18 12.3 0.0 1.9 1 1 1 2 2 2 0 ABC transporter PAXNEB PF05625.11 gi|327311698|ref|YP_004338595.1| - 0.056 12.6 0.5 0.78 8.8 0.1 2.2 1 1 1 2 2 2 0 PAXNEB protein TsaE PF02367.17 gi|327311698|ref|YP_004338595.1| - 0.057 13.4 0.0 0.37 10.8 0.0 2.3 3 0 0 3 3 3 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DNA_pol_lambd_f PF10391.9 gi|327311698|ref|YP_004338595.1| - 0.12 12.2 0.1 7.1 6.6 0.0 2.6 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda Radical_SAM PF04055.21 gi|327311700|ref|YP_004338597.1| - 1e-14 55.2 0.0 4.8e-14 53.1 0.0 2.1 1 1 2 3 3 3 1 Radical SAM superfamily HTH_50 PF18024.1 gi|327311701|ref|YP_004338598.1| - 0.029 14.0 0.2 0.41 10.3 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.15 gi|327311701|ref|YP_004338598.1| - 0.15 12.1 0.1 0.61 10.2 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase zf-C2H2 PF00096.26 gi|327311702|ref|YP_004338599.1| - 1.8e-08 34.3 11.6 6.6e-05 23.1 0.2 3.8 4 0 0 4 4 3 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|327311702|ref|YP_004338599.1| - 1.6e-07 31.5 12.3 0.0033 18.1 0.2 3.9 4 0 0 4 4 3 3 C2H2-type zinc finger zf-Di19 PF05605.12 gi|327311702|ref|YP_004338599.1| - 1.8e-07 31.4 7.6 1.2e-05 25.5 0.7 3.2 2 1 1 3 3 3 2 Drought induced 19 protein (Di19), zinc-binding DUF1677 PF07911.13 gi|327311702|ref|YP_004338599.1| - 0.00062 20.1 4.5 0.0022 18.4 0.5 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1677) DZR PF12773.7 gi|327311702|ref|YP_004338599.1| - 0.0011 19.0 1.6 0.14 12.2 0.1 2.4 2 1 0 2 2 2 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|327311702|ref|YP_004338599.1| - 0.0022 18.1 3.8 0.075 13.2 0.0 2.6 3 1 0 3 3 2 1 Zinc ribbon domain zf-TFIIIC PF12660.7 gi|327311702|ref|YP_004338599.1| - 0.0035 17.2 1.9 0.0035 17.2 1.9 2.7 2 1 0 2 2 1 1 Putative zinc-finger of transcription factor IIIC complex C1_2 PF03107.16 gi|327311702|ref|YP_004338599.1| - 0.0069 16.7 5.6 1 9.8 0.7 3.1 3 0 0 3 3 3 1 C1 domain zf_UBZ PF18439.1 gi|327311702|ref|YP_004338599.1| - 0.0087 15.6 5.3 2.8 7.6 0.0 3.6 4 0 0 4 4 3 1 Ubiquitin-Binding Zinc Finger zinc_ribbon_11 PF11682.8 gi|327311702|ref|YP_004338599.1| - 0.02 14.9 0.6 0.037 14.0 0.5 1.6 1 1 0 1 1 1 0 Probable zinc-ribbon zf-HIT PF04438.16 gi|327311702|ref|YP_004338599.1| - 0.022 14.6 10.0 2.8 7.9 0.3 3.9 4 0 0 4 4 4 0 HIT zinc finger HNH PF01844.23 gi|327311702|ref|YP_004338599.1| - 0.026 14.7 10.9 1.2 9.3 0.2 3.6 4 0 0 4 4 4 0 HNH endonuclease RNF220 PF15926.5 gi|327311702|ref|YP_004338599.1| - 0.04 13.6 1.5 0.68 9.5 0.1 2.7 1 1 2 3 3 3 0 E3 ubiquitin-protein ligase RNF220 DNA_RNApol_7kD PF03604.13 gi|327311702|ref|YP_004338599.1| - 0.045 13.4 8.1 8.1 6.2 0.8 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_9 PF16293.5 gi|327311702|ref|YP_004338599.1| - 0.05 13.4 3.7 6.4 6.7 0.0 3.3 3 1 1 4 4 3 0 C2H2 type zinc-finger (1 copy) DUF2318 PF10080.9 gi|327311702|ref|YP_004338599.1| - 0.055 13.6 7.5 0.14 12.3 0.6 2.8 1 1 2 3 3 3 0 Predicted membrane protein (DUF2318) Prok-RING_1 PF14446.6 gi|327311702|ref|YP_004338599.1| - 0.059 13.3 6.8 2.6 8.0 0.0 3.7 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 Actin_micro PF17003.5 gi|327311702|ref|YP_004338599.1| - 0.066 12.4 5.6 2.2 7.4 2.0 2.8 1 1 1 2 2 2 0 Putative actin-like family zf-trcl PF13451.6 gi|327311702|ref|YP_004338599.1| - 0.076 12.9 2.0 3.8 7.5 0.2 2.3 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf-C2H2_2 PF12756.7 gi|327311702|ref|YP_004338599.1| - 0.084 13.2 6.7 17 5.8 0.0 3.6 1 1 1 2 2 2 0 C2H2 type zinc-finger (2 copies) zinc-ribbons_6 PF07191.12 gi|327311702|ref|YP_004338599.1| - 0.1 12.6 2.9 3.6 7.7 0.2 2.5 1 1 1 2 2 2 0 zinc-ribbons zf-H2C2_2 PF13465.6 gi|327311702|ref|YP_004338599.1| - 0.12 12.9 7.6 0.23 11.9 0.0 3.6 4 0 0 4 4 3 0 Zinc-finger double domain PHF5 PF03660.14 gi|327311702|ref|YP_004338599.1| - 0.14 12.3 5.7 0.62 10.3 5.7 1.9 1 1 0 1 1 1 0 PHF5-like protein Zf_RING PF16744.5 gi|327311702|ref|YP_004338599.1| - 0.14 12.2 7.3 0.71 10.0 0.4 3.0 1 1 2 3 3 3 0 KIAA1045 RING finger zf_C2HC_14 PF18574.1 gi|327311702|ref|YP_004338599.1| - 0.15 11.9 4.6 0.85 9.5 0.1 3.1 3 0 0 3 3 3 0 C2HC Zing finger domain Zn_ribbon_SprT PF17283.2 gi|327311702|ref|YP_004338599.1| - 0.21 11.5 9.7 4.5 7.3 0.1 3.6 4 0 0 4 4 3 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|327311702|ref|YP_004338599.1| - 0.23 11.3 5.4 15 5.4 0.0 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DUF2175 PF09943.9 gi|327311702|ref|YP_004338599.1| - 0.23 11.8 4.9 0.5 10.7 0.1 2.8 3 0 0 3 3 2 0 Uncharacterized protein conserved in archaea (DUF2175) PRP21_like_P PF12230.8 gi|327311702|ref|YP_004338599.1| - 0.24 11.3 0.2 4.7 7.0 0.1 2.1 1 1 1 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein DUF3268 PF11672.8 gi|327311702|ref|YP_004338599.1| - 0.25 11.7 3.2 0.19 12.1 1.0 1.8 1 1 0 2 2 2 0 zinc-finger-containing domain DUF2256 PF10013.9 gi|327311702|ref|YP_004338599.1| - 0.26 11.4 7.1 1.2 9.4 0.0 3.4 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-RRN7 PF11781.8 gi|327311702|ref|YP_004338599.1| - 0.29 10.8 10.7 16 5.3 0.1 4.2 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Endonuclease_7 PF02945.15 gi|327311702|ref|YP_004338599.1| - 0.32 10.9 7.2 5.3 7.0 7.6 2.5 1 1 1 2 2 2 0 Recombination endonuclease VII zf-C2H2_12 PF18658.1 gi|327311702|ref|YP_004338599.1| - 0.32 10.6 10.7 5.6 6.6 1.2 3.8 2 1 2 4 4 4 0 Zinc-finger C2H2-type Desulfoferrod_N PF06397.12 gi|327311702|ref|YP_004338599.1| - 0.46 10.2 0.1 0.46 10.2 0.1 3.0 4 0 0 4 4 2 0 Desulfoferrodoxin, N-terminal domain zf-BED PF02892.15 gi|327311702|ref|YP_004338599.1| - 0.69 10.0 15.5 2.6 8.2 1.4 3.8 1 1 3 4 4 4 0 BED zinc finger zf-TRAF PF02176.18 gi|327311702|ref|YP_004338599.1| - 0.71 10.6 4.3 11 6.8 0.3 2.6 2 1 0 2 2 2 0 TRAF-type zinc finger zf-C2H2_jaz PF12171.8 gi|327311702|ref|YP_004338599.1| - 0.85 10.0 0.0 0.85 10.0 0.0 4.5 4 1 0 4 4 4 0 Zinc-finger double-stranded RNA-binding zf-CHY PF05495.12 gi|327311702|ref|YP_004338599.1| - 1.1 9.9 6.3 0.77 10.3 3.6 2.1 1 1 1 2 2 2 0 CHY zinc finger zf_C2H2_ZHX PF18387.1 gi|327311702|ref|YP_004338599.1| - 1.2 8.8 3.7 2 8.2 0.0 2.9 4 0 0 4 4 3 0 Zinc-fingers and homeoboxes C2H2 finger domain zf-UBP PF02148.19 gi|327311702|ref|YP_004338599.1| - 3.3 8.1 8.1 46 4.4 8.1 2.7 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein zf-met PF12874.7 gi|327311702|ref|YP_004338599.1| - 3.5 8.2 0.0 3.5 8.2 0.0 4.5 4 1 0 4 4 3 0 Zinc-finger of C2H2 type DUF4428 PF14471.6 gi|327311702|ref|YP_004338599.1| - 4.8 7.2 9.9 2.8 7.9 2.7 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4428) zf-C2H2_6 PF13912.6 gi|327311702|ref|YP_004338599.1| - 5.9 7.0 8.2 5.5 7.1 0.2 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger CarS-like PF01864.17 gi|327311703|ref|YP_004338600.1| - 5.3e-34 117.7 0.3 1.2e-33 116.6 0.3 1.5 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|327311703|ref|YP_004338600.1| - 0.027 14.2 0.8 0.027 14.2 0.8 1.8 2 0 0 2 2 2 0 Cytidylyltransferase family MNHE PF01899.16 gi|327311703|ref|YP_004338600.1| - 0.088 12.6 2.5 0.27 11.0 2.5 1.7 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit ATP-synt_F PF01990.17 gi|327311704|ref|YP_004338601.1| - 8e-11 42.1 0.0 9.4e-11 41.9 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Endonuc-FokI_C PF09254.11 gi|327311704|ref|YP_004338601.1| - 0.0086 15.4 0.0 0.0099 15.2 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease FokI, C terminal DUF3822 PF12864.7 gi|327311704|ref|YP_004338601.1| - 0.018 14.3 0.7 0.024 13.8 0.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3822) NOG1_N PF17835.1 gi|327311704|ref|YP_004338601.1| - 0.046 13.7 0.1 0.056 13.4 0.1 1.1 1 0 0 1 1 1 0 NOG1 N-terminal helical domain vATP-synt_E PF01991.18 gi|327311705|ref|YP_004338602.1| - 7.1e-08 32.1 9.7 3.1e-07 30.0 9.6 2.0 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HAUS4 PF14735.6 gi|327311705|ref|YP_004338602.1| - 0.0021 17.8 4.2 0.0031 17.2 4.2 1.2 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 4 DUF1574 PF07611.11 gi|327311705|ref|YP_004338602.1| - 0.011 15.1 0.6 0.011 15.1 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1574) DIT1_PvcA PF05141.12 gi|327311705|ref|YP_004338602.1| - 0.096 12.1 1.9 0.13 11.7 1.9 1.1 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein ATP-synt_ab PF00006.25 gi|327311706|ref|YP_004338603.1| - 1.9e-78 263.0 0.0 2.6e-78 262.6 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|327311706|ref|YP_004338603.1| - 1.8e-39 134.4 0.0 2.9e-39 133.7 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|327311706|ref|YP_004338603.1| - 6.1e-12 45.9 0.2 1.5e-11 44.7 0.2 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|327311706|ref|YP_004338603.1| - 0.014 15.7 0.0 0.034 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|327311706|ref|YP_004338603.1| - 0.11 12.7 0.0 15 5.9 0.0 2.7 2 0 0 2 2 2 0 Peptidase family M23 RNA_pol_Rpb5_C PF01191.19 gi|327311707|ref|YP_004338604.1| - 5.9e-25 86.9 0.0 6.5e-25 86.8 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.28 gi|327311708|ref|YP_004338605.1| - 6.1e-133 443.6 0.0 8e-133 443.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|327311708|ref|YP_004338605.1| - 6.5e-43 146.6 0.0 9.5e-43 146.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|327311708|ref|YP_004338605.1| - 1.1e-27 96.2 0.0 2.1e-27 95.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|327311708|ref|YP_004338605.1| - 6.9e-27 93.4 0.1 1.8e-26 92.1 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|327311708|ref|YP_004338605.1| - 3.2e-24 85.6 0.0 6.6e-24 84.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.13 gi|327311708|ref|YP_004338605.1| - 5.2e-22 77.9 0.5 1.2e-21 76.7 0.5 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|327311708|ref|YP_004338605.1| - 6.7e-10 39.4 1.2 4.8e-09 36.7 1.2 2.3 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|327311708|ref|YP_004338605.1| - 0.026 14.8 0.1 0.21 11.9 0.1 2.4 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.12 gi|327311709|ref|YP_004338606.1| - 2.5e-92 309.5 0.0 3.4e-92 309.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|327311709|ref|YP_004338606.1| - 2.2e-74 249.2 0.0 3.7e-74 248.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|327311709|ref|YP_004338606.1| - 2.8e-30 105.3 0.0 5e-30 104.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|327311709|ref|YP_004338606.1| - 1.6e-26 92.4 0.0 2.8e-26 91.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|327311709|ref|YP_004338606.1| - 1e-23 84.2 0.0 1.7e-23 83.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 CpXC PF14353.6 gi|327311709|ref|YP_004338606.1| - 0.0012 18.9 2.2 0.18 11.8 0.0 3.5 4 0 0 4 4 3 1 CpXC protein zf-RING_7 PF02591.15 gi|327311709|ref|YP_004338606.1| - 0.0024 18.0 5.1 0.12 12.6 0.2 3.5 3 0 0 3 3 3 1 C4-type zinc ribbon domain DZR PF12773.7 gi|327311709|ref|YP_004338606.1| - 0.011 15.7 1.2 1 9.5 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|327311709|ref|YP_004338606.1| - 0.019 15.1 3.1 5.1 7.3 0.0 3.0 2 1 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|327311709|ref|YP_004338606.1| - 0.037 13.4 6.6 1.4 8.5 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain HHV-5_US34A PF17087.5 gi|327311709|ref|YP_004338606.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus US34A protein family IBR PF01485.21 gi|327311709|ref|YP_004338606.1| - 0.22 11.8 0.5 0.61 10.3 0.1 1.9 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain Nudix_N_2 PF14803.6 gi|327311709|ref|YP_004338606.1| - 0.6 10.1 7.5 9.1 6.3 0.2 3.5 3 0 0 3 3 3 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|327311709|ref|YP_004338606.1| - 0.77 9.8 5.2 2.2 8.4 0.2 2.7 3 0 0 3 3 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|327311709|ref|YP_004338606.1| - 2.2 8.2 5.1 50 3.9 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|327311709|ref|YP_004338606.1| - 6.1 7.3 8.0 14 6.2 0.0 4.1 5 0 0 5 5 5 0 zinc-finger binding domain of transposase IS66 Auto_anti-p27 PF06677.12 gi|327311709|ref|YP_004338606.1| - 6.4 7.0 6.8 2.4 8.4 0.0 3.3 4 0 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb1_5 PF04998.17 gi|327311710|ref|YP_004338607.1| - 4.3e-50 170.6 0.0 7.4e-50 169.9 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HMA PF00403.26 gi|327311710|ref|YP_004338607.1| - 0.0015 18.9 1.8 0.81 10.2 0.1 4.0 2 1 2 4 4 4 2 Heavy-metal-associated domain DUF211 PF02680.14 gi|327311710|ref|YP_004338607.1| - 0.014 15.5 3.6 0.67 10.1 0.1 2.9 1 1 0 2 2 2 0 Uncharacterized ArCR, COG1888 Ribosomal_L7Ae PF01248.26 gi|327311711|ref|YP_004338608.1| - 1.4e-14 53.6 0.0 1.7e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|327311712|ref|YP_004338609.1| - 3.2e-17 62.1 0.8 1.3e-11 44.1 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|327311712|ref|YP_004338609.1| - 8.6e-13 48.2 2.6 5.5e-12 45.6 0.6 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|327311712|ref|YP_004338609.1| - 0.00012 21.9 0.1 0.021 14.7 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|327311712|ref|YP_004338609.1| - 0.00049 19.9 1.4 0.45 10.4 0.2 2.8 2 1 1 3 3 3 2 KH domain Glyco_trans_A_1 PF09318.10 gi|327311712|ref|YP_004338609.1| - 0.16 11.7 0.0 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 1 domain A Ribosom_S12_S23 PF00164.25 gi|327311713|ref|YP_004338610.1| - 7.7e-43 144.7 0.4 9.8e-43 144.4 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 RNA_pol_A_bac PF01000.26 gi|327311714|ref|YP_004338611.1| - 9.7e-29 100.0 0.0 1.6e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|327311714|ref|YP_004338611.1| - 3.2e-12 45.7 0.0 4.7e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L18 PF17135.4 gi|327311715|ref|YP_004338612.1| - 6e-09 35.6 0.3 6.3e-09 35.5 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|327311715|ref|YP_004338612.1| - 1.6e-06 28.8 0.1 2.3e-06 28.3 0.1 1.3 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|327311716|ref|YP_004338613.1| - 2e-11 44.2 1.1 4.4e-10 39.9 1.1 2.2 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|327311717|ref|YP_004338614.1| - 2.2e-32 112.1 0.0 2.6e-32 111.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|327311718|ref|YP_004338615.1| - 4.3e-28 97.4 0.1 4.7e-28 97.3 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|327311718|ref|YP_004338615.1| - 0.046 14.0 0.2 0.085 13.1 0.2 1.5 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) LSM PF01423.22 gi|327311719|ref|YP_004338616.1| - 2.4e-17 62.4 0.8 2.7e-17 62.2 0.8 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|327311719|ref|YP_004338616.1| - 0.0049 17.0 0.1 0.0061 16.7 0.1 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Glycoprotein_B PF00606.18 gi|327311719|ref|YP_004338616.1| - 0.081 12.4 0.0 0.081 12.4 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B ectodomain AdoMet_Synthase PF01941.19 gi|327311720|ref|YP_004338617.1| - 1.1e-173 577.6 3.6 1.2e-173 577.5 3.6 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|327311720|ref|YP_004338617.1| - 0.14 12.9 0.3 0.89 10.3 0.0 2.4 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain DUF460 PF04312.13 gi|327311721|ref|YP_004338618.1| - 2.1e-43 147.4 0.1 4.8e-43 146.2 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Apolipoprotein PF01442.18 gi|327311721|ref|YP_004338618.1| - 0.00068 19.6 1.4 0.00068 19.6 1.4 2.7 3 0 0 3 3 3 1 Apolipoprotein A1/A4/E domain OmpH PF03938.14 gi|327311721|ref|YP_004338618.1| - 0.0026 18.1 0.2 0.0026 18.1 0.2 2.7 3 0 0 3 3 3 1 Outer membrane protein (OmpH-like) ABC_tran_CTD PF16326.5 gi|327311721|ref|YP_004338618.1| - 0.0029 17.8 5.6 0.0029 17.8 5.6 2.1 2 0 0 2 2 2 1 ABC transporter C-terminal domain acVLRF1 PF18859.1 gi|327311721|ref|YP_004338618.1| - 0.0042 17.4 0.0 0.017 15.4 0.0 2.1 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor Seryl_tRNA_N PF02403.22 gi|327311721|ref|YP_004338618.1| - 0.008 16.4 2.2 0.008 16.4 2.2 2.8 3 0 0 3 3 2 1 Seryl-tRNA synthetase N-terminal domain ADIP PF11559.8 gi|327311721|ref|YP_004338618.1| - 0.011 15.8 2.7 0.027 14.6 2.7 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding GAS PF13851.6 gi|327311721|ref|YP_004338618.1| - 0.014 14.8 3.0 0.053 12.9 3.0 2.0 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Amidohydro_1 PF01979.20 gi|327311721|ref|YP_004338618.1| - 0.069 12.4 0.0 0.31 10.3 0.0 2.0 2 0 0 2 2 2 0 Amidohydrolase family NanE PF04131.14 gi|327311721|ref|YP_004338618.1| - 0.072 12.3 0.0 0.22 10.7 0.0 1.8 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Tex_YqgF PF16921.5 gi|327311721|ref|YP_004338618.1| - 0.074 13.5 0.1 2.3 8.7 0.0 2.6 2 0 0 2 2 2 0 Tex protein YqgF-like domain CENP-F_leu_zip PF10473.9 gi|327311721|ref|YP_004338618.1| - 0.085 12.9 8.4 1.1 9.3 1.2 2.7 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2514 PF10721.9 gi|327311721|ref|YP_004338618.1| - 0.11 12.5 3.8 3.9 7.5 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2514) ATPase PF06745.13 gi|327311721|ref|YP_004338618.1| - 0.18 11.1 1.9 2.3 7.5 0.0 3.0 3 0 0 3 3 3 0 KaiC FPP PF05911.11 gi|327311721|ref|YP_004338618.1| - 0.19 9.9 5.0 0.34 9.0 5.0 1.3 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil DUF1664 PF07889.12 gi|327311721|ref|YP_004338618.1| - 0.27 11.3 3.6 8.8 6.4 0.1 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) HALZ PF02183.18 gi|327311721|ref|YP_004338618.1| - 0.29 11.4 6.6 1.5 9.1 0.5 3.0 3 0 0 3 3 3 0 Homeobox associated leucine zipper HalX PF08663.10 gi|327311721|ref|YP_004338618.1| - 0.41 11.0 14.6 0.29 11.5 0.6 3.9 3 1 1 4 4 4 0 HalX domain Fungal_TACC PF12709.7 gi|327311721|ref|YP_004338618.1| - 1.7 9.1 5.4 4.9 7.7 0.8 2.7 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins Prefoldin_2 PF01920.20 gi|327311721|ref|YP_004338618.1| - 3.7 7.5 8.9 2.6 8.0 0.7 2.9 3 0 0 3 3 2 0 Prefoldin subunit RIO1 PF01163.22 gi|327311722|ref|YP_004338619.1| - 1.3e-40 139.0 0.0 1.9e-40 138.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|327311722|ref|YP_004338619.1| - 3e-20 72.2 0.1 5.4e-20 71.4 0.1 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|327311722|ref|YP_004338619.1| - 3.2e-07 30.5 5.6 0.00086 19.3 0.1 3.0 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|327311722|ref|YP_004338619.1| - 0.00039 19.9 0.0 0.0015 17.9 0.0 1.8 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|327311722|ref|YP_004338619.1| - 0.0095 14.7 0.0 0.019 13.8 0.0 1.4 2 0 0 2 2 2 1 Fungal protein kinase HrcA_DNA-bdg PF03444.15 gi|327311722|ref|YP_004338619.1| - 0.032 13.9 0.0 0.096 12.4 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ABC1 PF03109.16 gi|327311722|ref|YP_004338619.1| - 0.052 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 ABC1 family Rrf2 PF02082.20 gi|327311722|ref|YP_004338619.1| - 0.063 13.6 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator UPF0179 PF03684.13 gi|327311723|ref|YP_004338620.1| - 8.5e-30 103.5 0.7 9.9e-30 103.3 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) NifU PF01106.17 gi|327311723|ref|YP_004338620.1| - 0.55 10.4 3.9 1.2 9.4 0.9 2.7 2 1 0 2 2 2 0 NifU-like domain Cytochrom_B562 PF07361.11 gi|327311724|ref|YP_004338621.1| - 0.0078 16.8 0.5 0.0088 16.7 0.5 1.3 1 0 0 1 1 1 1 Cytochrome b562 TPR_2 PF07719.17 gi|327311724|ref|YP_004338621.1| - 0.031 14.4 3.0 0.041 14.0 1.3 2.0 1 1 1 2 2 2 0 Tetratricopeptide repeat PPR_2 PF13041.6 gi|327311724|ref|YP_004338621.1| - 0.053 13.7 0.3 0.091 13.0 0.3 1.3 1 0 0 1 1 1 0 PPR repeat family LUC7 PF03194.15 gi|327311724|ref|YP_004338621.1| - 0.057 13.1 1.6 0.063 12.9 1.6 1.1 1 0 0 1 1 1 0 LUC7 N_terminus DUF4363 PF14276.6 gi|327311724|ref|YP_004338621.1| - 0.066 13.3 0.8 0.079 13.1 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) TPR_6 PF13174.6 gi|327311724|ref|YP_004338621.1| - 0.075 13.7 0.9 0.19 12.5 0.9 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Telomere_reg-2 PF10193.9 gi|327311724|ref|YP_004338621.1| - 0.075 13.5 0.3 0.12 12.8 0.3 1.4 1 1 0 1 1 1 0 Telomere length regulation protein PPR PF01535.20 gi|327311724|ref|YP_004338621.1| - 0.082 13.2 0.5 0.45 10.9 0.2 2.2 2 0 0 2 2 2 0 PPR repeat TPR_16 PF13432.6 gi|327311724|ref|YP_004338621.1| - 0.21 12.3 0.3 0.21 12.3 0.3 1.8 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF357 PF04010.13 gi|327311725|ref|YP_004338622.1| - 2.2e-18 66.1 2.0 3.7e-18 65.4 2.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|327311725|ref|YP_004338622.1| - 2.5e-09 37.4 0.0 3.7e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 Cytidylyltransferase-like Formyl_trans_N PF00551.19 gi|327311725|ref|YP_004338622.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Formyl transferase Endonuclease_5 PF04493.14 gi|327311726|ref|YP_004338623.1| - 7.3e-50 169.4 0.1 1e-49 168.9 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|327311726|ref|YP_004338623.1| - 0.024 14.0 0.0 0.053 12.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function DUF99 Proteasome PF00227.26 gi|327311727|ref|YP_004338624.1| - 8.9e-51 172.1 0.7 1.1e-50 171.8 0.7 1.0 1 0 0 1 1 1 1 Proteasome subunit Radical_SAM PF04055.21 gi|327311728|ref|YP_004338625.1| - 5.4e-18 65.9 0.2 3e-16 60.3 0.0 2.8 2 1 1 3 3 3 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.12 gi|327311728|ref|YP_004338625.1| - 0.00012 21.5 1.5 0.0011 18.4 0.3 2.6 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.7 gi|327311728|ref|YP_004338625.1| - 0.026 14.5 0.1 0.026 14.5 0.1 2.6 3 0 0 3 3 3 0 Double zinc ribbon Fer4_12 PF13353.6 gi|327311728|ref|YP_004338625.1| - 0.047 14.0 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain GFA PF04828.14 gi|327311728|ref|YP_004338625.1| - 0.31 11.4 2.9 0.33 11.3 0.1 2.5 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37ae PF01780.19 gi|327311728|ref|YP_004338625.1| - 0.44 10.7 2.5 6.3 7.0 0.0 3.0 2 1 1 3 3 3 0 Ribosomal L37ae protein family Zn-ribbon_8 PF09723.10 gi|327311728|ref|YP_004338625.1| - 1.6 8.9 11.6 2.7 8.2 0.1 3.6 4 0 0 4 4 4 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|327311728|ref|YP_004338625.1| - 3.5 7.6 8.8 2.4 8.1 0.2 3.3 3 0 0 3 3 3 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|327311728|ref|YP_004338625.1| - 7.9 6.5 7.6 0.73 9.9 0.1 2.8 3 1 1 4 4 4 0 zinc-ribbons zf-dskA_traR PF01258.17 gi|327311728|ref|YP_004338625.1| - 9 6.3 9.2 32 4.6 0.2 3.3 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger PhoU_div PF01865.16 gi|327311729|ref|YP_004338626.1| - 7.2e-13 48.4 7.5 9e-13 48.0 7.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|327311729|ref|YP_004338626.1| - 0.01 16.3 3.1 0.01 16.3 3.1 2.7 2 1 0 2 2 2 1 PhoU domain FliG_M PF14841.6 gi|327311729|ref|YP_004338626.1| - 0.041 14.1 0.4 1.9 8.8 0.1 2.6 2 0 0 2 2 2 0 FliG middle domain RecG_N PF17190.4 gi|327311729|ref|YP_004338626.1| - 0.044 14.5 1.6 0.43 11.4 0.1 2.7 1 1 0 2 2 2 0 RecG N-terminal helical domain SapB_2 PF03489.17 gi|327311730|ref|YP_004338627.1| - 0.0016 18.5 0.1 0.0025 17.9 0.1 1.4 1 0 0 1 1 1 1 Saposin-like type B, region 2 SAM_adeno_trans PF01887.16 gi|327311731|ref|YP_004338628.1| - 1.9e-84 282.8 0.0 2.1e-84 282.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Prot_ATP_ID_OB PF16450.5 gi|327311731|ref|YP_004338628.1| - 0.033 14.1 0.0 0.58 10.1 0.0 2.6 3 0 0 3 3 3 0 Proteasomal ATPase OB C-terminal domain ProQ_C PF17516.2 gi|327311731|ref|YP_004338628.1| - 0.68 9.4 3.9 0.64 9.5 0.7 2.1 2 0 0 2 2 2 0 ProQ C-terminal domain Succ_CoA_lig PF13607.6 gi|327311732|ref|YP_004338629.1| - 6.8e-48 162.0 1.8 1.1e-44 151.6 0.1 3.5 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|327311732|ref|YP_004338629.1| - 1.5e-22 80.2 3.2 2.1e-21 76.5 0.9 3.2 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|327311732|ref|YP_004338629.1| - 5.9e-11 42.9 0.7 1.3e-10 41.8 0.7 1.6 1 0 0 1 1 1 1 CoA binding domain HAD PF12710.7 gi|327311732|ref|YP_004338629.1| - 0.00076 19.9 2.0 0.21 11.9 0.0 3.3 2 2 1 3 3 3 1 haloacid dehalogenase-like hydrolase NAD_Gly3P_dh_N PF01210.23 gi|327311732|ref|YP_004338629.1| - 0.012 15.5 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RTC PF01137.21 gi|327311733|ref|YP_004338630.1| - 5.2e-84 280.9 0.0 5.9e-84 280.7 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|327311733|ref|YP_004338630.1| - 1.7e-29 102.4 0.8 2.7e-29 101.7 0.8 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain NOG1_N PF17835.1 gi|327311734|ref|YP_004338631.1| - 1.3e-22 80.5 0.0 2.2e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|327311734|ref|YP_004338631.1| - 3.2e-20 72.3 0.0 5.3e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|327311734|ref|YP_004338631.1| - 4.2e-19 68.1 0.2 1e-18 66.9 0.2 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|327311734|ref|YP_004338631.1| - 1.4e-14 54.0 0.0 2e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|327311734|ref|YP_004338631.1| - 4.7e-06 26.6 0.4 1.1e-05 25.3 0.4 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|327311734|ref|YP_004338631.1| - 5.1e-06 26.5 1.1 0.016 15.1 0.1 2.8 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|327311734|ref|YP_004338631.1| - 2.6e-05 23.9 0.4 0.0047 16.5 0.2 2.6 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|327311734|ref|YP_004338631.1| - 8.6e-05 22.2 0.0 0.00021 21.0 0.0 1.6 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|327311734|ref|YP_004338631.1| - 0.00088 19.1 0.2 0.014 15.2 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|327311734|ref|YP_004338631.1| - 0.0012 18.6 0.2 0.0032 17.2 0.2 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|327311734|ref|YP_004338631.1| - 0.0046 16.6 0.1 0.0085 15.7 0.1 1.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AIG1 PF04548.16 gi|327311734|ref|YP_004338631.1| - 0.0048 16.3 0.0 0.0068 15.8 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Arf PF00025.21 gi|327311734|ref|YP_004338631.1| - 0.029 13.8 0.1 0.065 12.7 0.1 1.5 2 0 0 2 2 2 0 ADP-ribosylation factor family SRPRB PF09439.10 gi|327311734|ref|YP_004338631.1| - 0.069 12.6 0.0 0.17 11.3 0.0 1.6 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|327311734|ref|YP_004338631.1| - 0.12 12.6 0.1 12 6.1 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|327311734|ref|YP_004338631.1| - 0.12 12.7 0.0 0.29 11.5 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain Septin PF00735.18 gi|327311734|ref|YP_004338631.1| - 0.21 10.9 1.1 6.8 5.9 0.0 2.3 1 1 0 2 2 2 0 Septin Ribosomal_S11 PF00411.19 gi|327311736|ref|YP_004338633.1| - 1.3e-43 147.8 1.2 1.8e-43 147.4 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 CBS PF00571.28 gi|327311738|ref|YP_004338635.1| - 1.4e-48 163.1 17.6 1.6e-08 34.9 0.0 8.3 8 0 0 8 8 8 7 CBS domain IF3_N PF05198.16 gi|327311738|ref|YP_004338635.1| - 0.0081 16.4 0.1 1.1e+02 3.2 0.0 4.8 5 0 0 5 5 5 0 Translation initiation factor IF-3, N-terminal domain NBD_C PF17042.5 gi|327311738|ref|YP_004338635.1| - 0.021 15.3 0.6 0.11 13.1 0.1 2.4 2 1 0 2 2 2 0 Nucleotide-binding C-terminal domain TruB_C PF09142.11 gi|327311738|ref|YP_004338635.1| - 0.044 13.6 0.4 17 5.3 0.1 3.1 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal MMR_HSR1_C PF08438.10 gi|327311740|ref|YP_004338637.1| - 2.2e-34 118.4 0.0 3.6e-34 117.7 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|327311740|ref|YP_004338637.1| - 1e-18 67.5 0.0 2e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|327311740|ref|YP_004338637.1| - 1.9e-07 31.0 0.0 4e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|327311740|ref|YP_004338637.1| - 5.9e-05 22.6 0.0 0.00018 21.1 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|327311740|ref|YP_004338637.1| - 6.7e-05 22.9 0.0 0.00015 21.8 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Sigma70_r4_2 PF08281.12 gi|327311741|ref|YP_004338638.1| - 4.3e-06 26.3 0.0 8.4e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_7 PF02796.15 gi|327311741|ref|YP_004338638.1| - 5.1e-06 26.5 0.3 1.1e-05 25.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|327311741|ref|YP_004338638.1| - 2e-05 24.2 0.0 3.9e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|327311741|ref|YP_004338638.1| - 0.00011 21.7 0.0 0.00018 21.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family TnsD PF15978.5 gi|327311741|ref|YP_004338638.1| - 0.00044 19.3 0.0 0.00044 19.3 0.0 1.1 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_24 PF13412.6 gi|327311741|ref|YP_004338638.1| - 0.00068 19.1 0.1 0.002 17.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.6 gi|327311741|ref|YP_004338638.1| - 0.0041 16.9 0.0 0.007 16.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|327311741|ref|YP_004338638.1| - 0.0056 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|327311741|ref|YP_004338638.1| - 0.0068 16.5 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.6 gi|327311741|ref|YP_004338638.1| - 0.0092 16.4 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|327311741|ref|YP_004338638.1| - 0.014 15.6 0.0 0.024 14.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|327311741|ref|YP_004338638.1| - 0.014 15.4 0.0 0.033 14.2 0.0 1.6 2 0 0 2 2 1 0 Winged helix-turn helix TrmB PF01978.19 gi|327311741|ref|YP_004338638.1| - 0.015 15.2 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|327311741|ref|YP_004338638.1| - 0.019 14.8 0.1 0.057 13.2 0.0 1.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_8 PF02954.19 gi|327311741|ref|YP_004338638.1| - 0.02 14.7 0.0 0.046 13.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family PAX PF00292.18 gi|327311741|ref|YP_004338638.1| - 0.022 14.7 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain HTH_22 PF13309.6 gi|327311741|ref|YP_004338638.1| - 0.026 14.6 0.0 0.052 13.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|327311741|ref|YP_004338638.1| - 0.033 14.1 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|327311741|ref|YP_004338638.1| - 0.078 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_IS1 PF12759.7 gi|327311741|ref|YP_004338638.1| - 0.087 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 InsA C-terminal domain HTH_Crp_2 PF13545.6 gi|327311741|ref|YP_004338638.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|327311741|ref|YP_004338638.1| - 0.12 12.5 0.0 3.2 7.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase LacI PF00356.21 gi|327311741|ref|YP_004338638.1| - 0.13 12.1 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Sigma70_ECF PF07638.11 gi|327311741|ref|YP_004338638.1| - 0.14 12.1 0.1 0.33 10.8 0.0 1.6 2 0 0 2 2 2 0 ECF sigma factor AA_kinase PF00696.28 gi|327311742|ref|YP_004338639.1| - 5.8e-22 78.5 0.3 1.3e-20 74.1 0.3 2.0 1 1 0 1 1 1 1 Amino acid kinase family AlaDh_PNT_C PF01262.21 gi|327311742|ref|YP_004338639.1| - 0.13 11.6 1.9 0.21 10.9 1.9 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MFS_1 PF07690.16 gi|327311744|ref|YP_004338641.1| - 5.3e-21 74.9 29.2 5.3e-21 74.9 29.2 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|327311744|ref|YP_004338641.1| - 9.2e-06 24.8 18.0 0.00028 19.9 11.1 2.2 1 1 1 2 2 2 2 MFS_1 like family MFS_2 PF13347.6 gi|327311744|ref|YP_004338641.1| - 0.0033 16.0 7.2 0.0033 16.0 7.2 3.4 1 1 1 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.24 gi|327311744|ref|YP_004338641.1| - 0.059 12.2 0.2 0.059 12.2 0.2 2.9 1 1 1 3 3 3 0 Sugar (and other) transporter KRAB PF01352.27 gi|327311745|ref|YP_004338642.1| - 0.1 12.2 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 KRAB box CBS PF00571.28 gi|327311747|ref|YP_004338644.1| - 1.1e-26 93.0 5.1 4.9e-16 58.9 0.2 2.1 2 0 0 2 2 2 2 CBS domain GGDEF_2 PF17853.1 gi|327311747|ref|YP_004338644.1| - 0.033 14.5 0.2 1.6 9.0 0.0 2.1 1 1 1 2 2 2 0 GGDEF-like domain Phage_holin_3_6 PF07332.11 gi|327311748|ref|YP_004338645.1| - 0.026 14.6 6.6 0.026 14.6 6.6 3.8 1 1 3 4 4 4 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1129 PF06570.11 gi|327311748|ref|YP_004338645.1| - 0.041 13.4 0.7 0.041 13.4 0.7 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) HTH_17 PF12728.7 gi|327311749|ref|YP_004338646.1| - 5.8e-13 48.8 0.2 5.8e-13 48.8 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MerR PF00376.23 gi|327311749|ref|YP_004338646.1| - 3.4e-07 29.9 0.0 7e-07 28.9 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|327311749|ref|YP_004338646.1| - 3.8e-07 30.1 0.1 6.8e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein Sigma70_r4_2 PF08281.12 gi|327311749|ref|YP_004338646.1| - 0.019 14.6 0.0 0.043 13.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Sugar_tr PF00083.24 gi|327311750|ref|YP_004338647.1| - 3.9e-36 124.9 16.4 4.8e-36 124.6 16.4 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|327311750|ref|YP_004338647.1| - 9.8e-24 83.9 41.7 4.9e-20 71.8 24.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1 PF07690.16 gi|327311751|ref|YP_004338648.1| - 2.5e-25 89.2 50.4 5e-25 88.2 49.2 1.9 1 1 0 1 1 1 1 Major Facilitator Superfamily UPF0114 PF03350.16 gi|327311751|ref|YP_004338648.1| - 0.14 12.4 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein family, UPF0114 OATP PF03137.20 gi|327311751|ref|YP_004338648.1| - 0.68 8.1 2.5 0.3 9.3 0.1 1.6 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family ROK PF00480.20 gi|327311754|ref|YP_004338651.1| - 8.6e-50 169.9 0.0 1.6e-49 169.0 0.0 1.3 1 1 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|327311754|ref|YP_004338651.1| - 0.14 11.7 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain AAA_14 PF13173.6 gi|327311755|ref|YP_004338652.1| - 1.9e-19 70.0 0.0 2.8e-19 69.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|327311755|ref|YP_004338652.1| - 0.00033 20.8 0.0 0.00054 20.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|327311755|ref|YP_004338652.1| - 0.00038 20.4 0.1 0.0017 18.3 0.1 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|327311755|ref|YP_004338652.1| - 0.0019 18.5 0.0 0.017 15.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain HTH_24 PF13412.6 gi|327311755|ref|YP_004338652.1| - 0.0049 16.4 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AAA_16 PF13191.6 gi|327311755|ref|YP_004338652.1| - 0.0077 16.6 0.1 0.03 14.7 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain CLP1_P PF16575.5 gi|327311755|ref|YP_004338652.1| - 0.019 14.8 0.0 0.034 13.9 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HTH_Mga PF08280.11 gi|327311755|ref|YP_004338652.1| - 0.025 14.6 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain AAA_24 PF13479.6 gi|327311755|ref|YP_004338652.1| - 0.033 13.9 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain HTH_23 PF13384.6 gi|327311755|ref|YP_004338652.1| - 0.034 14.0 0.0 0.099 12.5 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_50 PF18024.1 gi|327311755|ref|YP_004338652.1| - 0.041 13.5 0.2 1.1 8.9 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|327311755|ref|YP_004338652.1| - 0.049 13.5 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AAA PF00004.29 gi|327311755|ref|YP_004338652.1| - 0.065 13.6 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HTH_11 PF08279.12 gi|327311755|ref|YP_004338652.1| - 0.078 12.9 0.0 0.22 11.5 0.0 1.7 2 0 0 2 2 2 0 HTH domain NUMOD1 PF07453.13 gi|327311755|ref|YP_004338652.1| - 0.19 12.0 0.0 0.33 11.3 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain DUF4307 PF14155.6 gi|327311757|ref|YP_004338654.1| - 0.25 11.2 1.5 0.45 10.4 1.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) Glyco_transf_21 PF13506.6 gi|327311758|ref|YP_004338655.1| - 4.1e-17 62.2 0.0 9.4e-17 61.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|327311758|ref|YP_004338655.1| - 9.7e-14 51.5 0.0 1.3e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|327311758|ref|YP_004338655.1| - 2.6e-13 50.4 0.0 3.7e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 FixS PF03597.15 gi|327311758|ref|YP_004338655.1| - 0.71 9.6 2.7 0.57 9.9 0.4 2.0 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type RHH_1 PF01402.21 gi|327311759|ref|YP_004338656.1| - 1.1e-05 25.2 0.1 3.2e-05 23.7 0.1 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PCP_red PF08369.10 gi|327311759|ref|YP_004338656.1| - 0.035 14.3 1.2 0.91 9.8 0.1 2.6 2 1 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Creatininase PF02633.14 gi|327311762|ref|YP_004338659.1| - 1.2e-65 221.4 0.4 1.3e-65 221.2 0.4 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Glyco_hydro_3_C PF01915.22 gi|327311762|ref|YP_004338659.1| - 0.086 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_57 PF03065.15 gi|327311763|ref|YP_004338660.1| - 3.5e-51 174.3 0.4 4.9e-51 173.9 0.4 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 AMPK1_CBM PF16561.5 gi|327311763|ref|YP_004338660.1| - 0.075 13.3 0.0 0.2 11.9 0.0 1.7 1 0 0 1 1 1 0 Glycogen recognition site of AMP-activated protein kinase Phosphodiest PF01663.22 gi|327311764|ref|YP_004338661.1| - 2e-20 73.7 0.0 5.8e-20 72.2 0.0 1.7 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|327311764|ref|YP_004338661.1| - 4.5e-06 26.9 0.1 0.0036 17.4 0.1 2.2 2 0 0 2 2 2 2 PglZ domain RimK PF08443.11 gi|327311765|ref|YP_004338662.1| - 4.9e-31 107.8 0.0 1.5e-30 106.2 0.0 1.8 2 1 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|327311765|ref|YP_004338662.1| - 6e-08 32.9 0.0 1.8e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|327311765|ref|YP_004338662.1| - 2.3e-05 23.9 0.0 4.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain R2K_3 PF14243.6 gi|327311765|ref|YP_004338662.1| - 0.0053 16.8 0.1 0.0069 16.4 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 Dala_Dala_lig_C PF07478.13 gi|327311765|ref|YP_004338662.1| - 0.028 13.9 0.0 0.3 10.6 0.0 2.0 2 0 0 2 2 2 0 D-ala D-ala ligase C-terminus ATPgrasp_YheCD PF14398.6 gi|327311765|ref|YP_004338662.1| - 0.1 11.9 0.0 10 5.3 0.0 2.9 1 1 1 2 2 2 0 YheC/D like ATP-grasp CPSase_L_D2 PF02786.17 gi|327311766|ref|YP_004338663.1| - 1.1e-95 319.1 0.0 7e-64 215.2 0.0 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|327311766|ref|YP_004338663.1| - 2.6e-27 95.6 0.0 5.3e-27 94.6 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|327311766|ref|YP_004338663.1| - 1.3e-19 70.4 0.0 9.3e-10 38.3 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|327311766|ref|YP_004338663.1| - 7.9e-15 54.9 0.0 1e-06 28.5 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|327311766|ref|YP_004338663.1| - 1.8e-11 43.9 0.0 0.00026 20.8 0.1 2.9 2 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|327311766|ref|YP_004338663.1| - 1.4e-10 41.5 0.0 0.00014 22.0 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|327311766|ref|YP_004338663.1| - 6.1e-10 38.9 0.0 0.00026 20.5 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|327311766|ref|YP_004338663.1| - 1.4e-06 28.2 0.0 0.014 15.2 0.0 2.6 2 1 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|327311766|ref|YP_004338663.1| - 2.3e-05 24.1 0.0 0.26 10.9 0.0 2.9 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|327311766|ref|YP_004338663.1| - 0.0063 16.1 0.0 0.63 9.6 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain Voltage_CLC PF00654.20 gi|327311767|ref|YP_004338664.1| - 4.5e-76 256.4 43.3 4.5e-76 256.4 43.3 2.0 2 0 0 2 2 2 2 Voltage gated chloride channel MS_channel PF00924.18 gi|327311768|ref|YP_004338665.1| - 1.1e-13 51.3 1.2 1.3e-13 51.0 0.2 1.5 1 1 0 1 1 1 1 Mechanosensitive ion channel DUF2754 PF10953.8 gi|327311768|ref|YP_004338665.1| - 0.04 14.2 0.6 0.095 13.0 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2754) AA_permease_2 PF13520.6 gi|327311769|ref|YP_004338666.1| - 1.9e-35 122.5 35.7 2.3e-35 122.3 35.7 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|327311769|ref|YP_004338666.1| - 1.1e-24 86.8 36.7 2.2e-24 85.9 36.7 1.4 1 1 0 1 1 1 1 Amino acid permease TrkA_N PF02254.18 gi|327311770|ref|YP_004338667.1| - 2e-05 24.8 0.1 3.3e-05 24.1 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|327311770|ref|YP_004338667.1| - 0.00012 21.8 0.0 0.00026 20.8 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|327311770|ref|YP_004338667.1| - 0.016 15.6 0.0 0.025 15.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding CoA_binding_2 PF13380.6 gi|327311770|ref|YP_004338667.1| - 0.021 15.3 0.0 0.04 14.4 0.0 1.4 1 0 0 1 1 1 0 CoA binding domain Glyco_trans_4_2 PF13477.6 gi|327311770|ref|YP_004338667.1| - 0.039 14.0 0.0 0.2 11.7 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase 4-like Phage_holin_3_6 PF07332.11 gi|327311772|ref|YP_004338669.1| - 9.7e-05 22.4 1.1 0.00013 22.0 1.1 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III DUF4131 PF13567.6 gi|327311772|ref|YP_004338669.1| - 0.019 14.6 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PAP_PilO PF06864.12 gi|327311772|ref|YP_004338669.1| - 0.061 12.1 0.1 0.067 12.0 0.1 1.1 1 0 0 1 1 1 0 Pilin accessory protein (PilO) DUF2207 PF09972.9 gi|327311772|ref|YP_004338669.1| - 0.12 11.1 0.2 0.13 11.0 0.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Bunya_G2 PF03563.13 gi|327311772|ref|YP_004338669.1| - 0.13 11.5 1.9 0.16 11.2 1.9 1.1 1 0 0 1 1 1 0 Bunyavirus glycoprotein G2 Peptidase_M54 PF07998.11 gi|327311774|ref|YP_004338671.1| - 1.2e-25 90.7 0.0 1.5e-25 90.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|327311774|ref|YP_004338671.1| - 0.00013 21.9 0.0 0.00016 21.5 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_4 PF13583.6 gi|327311774|ref|YP_004338671.1| - 0.002 17.8 0.0 0.0059 16.3 0.0 1.7 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|327311774|ref|YP_004338671.1| - 0.0033 16.4 0.0 0.0045 16.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Metallopep PF12044.8 gi|327311774|ref|YP_004338671.1| - 0.0066 15.1 0.5 0.01 14.5 0.5 1.2 1 0 0 1 1 1 1 Putative peptidase family Reprolysin_3 PF13582.6 gi|327311774|ref|YP_004338671.1| - 0.012 16.1 0.4 0.014 15.9 0.4 1.3 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|327311774|ref|YP_004338671.1| - 0.05 13.8 0.0 0.059 13.5 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 DUF4953 PF16313.5 gi|327311774|ref|YP_004338671.1| - 0.086 12.0 0.4 0.12 11.6 0.4 1.2 1 0 0 1 1 1 0 Met-zincin Peptidase_M43 PF05572.13 gi|327311774|ref|YP_004338671.1| - 0.15 12.0 0.1 0.18 11.7 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A GDPD PF03009.17 gi|327311775|ref|YP_004338672.1| - 2.1e-28 99.8 0.0 4.3e-26 92.2 0.0 2.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|327311775|ref|YP_004338672.1| - 1.1e-06 28.9 0.6 9.5e-06 25.9 0.3 2.6 3 0 0 3 3 3 1 Glycerophosphoryl diester phosphodiesterase family PI-PLC-X PF00388.19 gi|327311775|ref|YP_004338672.1| - 0.0034 17.0 0.0 0.0059 16.2 0.0 1.3 1 0 0 1 1 1 1 Phosphatidylinositol-specific phospholipase C, X domain EAL PF00563.20 gi|327311775|ref|YP_004338672.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 EAL domain MFS_1 PF07690.16 gi|327311776|ref|YP_004338673.1| - 2e-23 82.9 50.3 3.1e-15 56.0 39.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|327311776|ref|YP_004338673.1| - 2.3e-06 26.8 0.5 4.5e-05 22.5 0.0 2.4 2 2 0 2 2 2 1 MFS_1 like family Nuc_H_symport PF03825.16 gi|327311776|ref|YP_004338673.1| - 0.00016 20.8 7.1 0.00019 20.5 4.9 2.1 2 0 0 2 2 2 1 Nucleoside H+ symporter MFS_2 PF13347.6 gi|327311776|ref|YP_004338673.1| - 0.22 10.1 26.0 0.0097 14.5 12.9 2.3 2 0 0 2 2 2 0 MFS/sugar transport protein TPR_12 PF13424.6 gi|327311776|ref|YP_004338673.1| - 0.23 11.8 2.0 0.35 11.2 0.0 2.4 3 0 0 3 3 3 0 Tetratricopeptide repeat MobB PF03205.14 gi|327311777|ref|YP_004338674.1| - 9e-21 74.2 0.1 1.7e-20 73.3 0.1 1.4 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|327311777|ref|YP_004338674.1| - 0.019 14.9 0.0 0.025 14.5 0.0 1.3 1 1 0 1 1 1 0 NTPase Hom_end PF05204.14 gi|327311777|ref|YP_004338674.1| - 0.032 14.4 0.0 0.049 13.8 0.0 1.2 1 0 0 1 1 1 0 Homing endonuclease AAA_35 PF14516.6 gi|327311777|ref|YP_004338674.1| - 0.037 12.9 0.0 0.045 12.6 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain ATPase_2 PF01637.18 gi|327311777|ref|YP_004338674.1| - 0.083 12.8 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|327311777|ref|YP_004338674.1| - 0.14 11.5 0.0 0.18 11.1 0.0 1.2 1 0 0 1 1 1 0 KaiC CbiA PF01656.23 gi|327311777|ref|YP_004338674.1| - 0.16 12.0 0.0 0.16 12.0 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain CLP1_P PF16575.5 gi|327311777|ref|YP_004338674.1| - 0.22 11.3 0.0 0.63 9.8 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MoeA_N PF03453.17 gi|327311778|ref|YP_004338675.1| - 1.4e-26 93.2 0.4 2.6e-26 92.3 0.4 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|327311778|ref|YP_004338675.1| - 1.1e-13 51.0 0.0 3.3e-13 49.5 0.0 1.7 1 1 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|327311778|ref|YP_004338675.1| - 0.06 13.5 0.2 0.23 11.7 0.0 2.2 2 1 0 2 2 2 0 MoeA C-terminal region (domain IV) MBF1 PF08523.10 gi|327311778|ref|YP_004338675.1| - 0.15 12.5 0.1 0.52 10.8 0.0 1.8 2 0 0 2 2 2 0 Multiprotein bridging factor 1 Fibrillarin PF01269.17 gi|327311779|ref|YP_004338676.1| - 3.3e-103 343.7 0.0 3.7e-103 343.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|327311779|ref|YP_004338676.1| - 1.9e-07 31.0 0.0 2.7e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|327311779|ref|YP_004338676.1| - 0.043 13.5 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltr_RsmB-F PF01189.17 gi|327311779|ref|YP_004338676.1| - 0.061 13.0 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Ubie_methyltran PF01209.18 gi|327311779|ref|YP_004338676.1| - 0.082 12.2 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 gi|327311779|ref|YP_004338676.1| - 0.11 13.5 0.0 0.36 11.9 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Nop PF01798.18 gi|327311780|ref|YP_004338677.1| - 1.7e-69 233.8 0.0 2.2e-69 233.4 0.0 1.1 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Focal_AT PF03623.13 gi|327311780|ref|YP_004338677.1| - 0.041 13.9 0.0 0.14 12.1 0.0 1.8 1 1 1 2 2 2 0 Focal adhesion targeting region Cas_St_Csn2 PF16813.5 gi|327311780|ref|YP_004338677.1| - 0.093 11.8 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein Csn2 subfamily St GatB_N PF02934.15 gi|327311781|ref|YP_004338678.1| - 2.8e-63 213.9 0.0 3.9e-63 213.4 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|327311781|ref|YP_004338678.1| - 4.8e-11 42.7 0.0 9.7e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.18 gi|327311781|ref|YP_004338678.1| - 4.3e-07 29.9 0.0 4.4e-06 26.7 0.0 2.4 1 1 0 1 1 1 1 GatB domain Frankia_peptide PF14407.6 gi|327311781|ref|YP_004338678.1| - 0.13 12.2 0.1 17 5.5 0.1 2.6 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. RrnaAD PF00398.20 gi|327311782|ref|YP_004338679.1| - 1.3e-42 145.7 0.0 1.6e-42 145.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|327311782|ref|YP_004338679.1| - 1.6e-08 35.1 0.0 2.6e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327311782|ref|YP_004338679.1| - 1.8e-05 25.3 0.0 3.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|327311782|ref|YP_004338679.1| - 0.00021 21.1 0.0 0.00031 20.5 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|327311782|ref|YP_004338679.1| - 0.0022 17.8 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327311782|ref|YP_004338679.1| - 0.0032 17.3 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|327311782|ref|YP_004338679.1| - 0.0038 16.8 0.0 0.0056 16.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW DREV PF05219.12 gi|327311782|ref|YP_004338679.1| - 0.011 14.9 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_4 PF02390.17 gi|327311782|ref|YP_004338679.1| - 0.018 14.5 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase MTS PF05175.14 gi|327311782|ref|YP_004338679.1| - 0.068 12.7 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|327311782|ref|YP_004338679.1| - 0.077 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|327311782|ref|YP_004338679.1| - 0.081 12.6 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|327311782|ref|YP_004338679.1| - 0.083 13.6 0.0 0.12 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|327311782|ref|YP_004338679.1| - 0.18 11.1 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Lactamase_B_2 PF12706.7 gi|327311783|ref|YP_004338680.1| - 4.3e-28 98.2 0.1 5.4e-28 97.9 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|327311783|ref|YP_004338680.1| - 4.1e-11 43.2 0.9 1.4e-10 41.5 0.9 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|327311783|ref|YP_004338680.1| - 0.056 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 tRNase Z endonuclease Lactamase_B_3 PF13483.6 gi|327311783|ref|YP_004338680.1| - 0.14 12.1 0.0 1.2 9.0 0.0 2.1 2 1 0 2 2 2 0 Beta-lactamase superfamily domain Methyltransf_11 PF08241.12 gi|327311784|ref|YP_004338681.1| - 2.4e-12 47.4 0.0 3.7e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327311784|ref|YP_004338681.1| - 2.7e-11 44.0 0.1 4e-11 43.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327311784|ref|YP_004338681.1| - 1e-06 29.4 0.0 1.7e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327311784|ref|YP_004338681.1| - 9.4e-05 22.3 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|327311784|ref|YP_004338681.1| - 0.0044 16.8 0.0 0.0065 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|327311784|ref|YP_004338681.1| - 0.0051 16.2 0.0 0.0072 15.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|327311784|ref|YP_004338681.1| - 0.052 13.1 0.2 0.057 13.0 0.2 1.3 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|327311784|ref|YP_004338681.1| - 0.1 12.3 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|327311784|ref|YP_004338681.1| - 0.18 11.3 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.20 gi|327311784|ref|YP_004338681.1| - 0.2 10.9 0.1 0.22 10.8 0.1 1.4 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase tRNA-synt_1b PF00579.25 gi|327311785|ref|YP_004338682.1| - 2.4e-40 138.7 0.0 4.1e-40 138.0 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF371 PF04027.13 gi|327311786|ref|YP_004338683.1| - 5.1e-39 133.3 0.0 5.9e-39 133.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF1958 PF09211.10 gi|327311786|ref|YP_004338683.1| - 0.12 12.7 0.0 6.9 7.1 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1958) AMP-binding_C_2 PF14535.6 gi|327311786|ref|YP_004338683.1| - 0.14 12.5 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 AMP-binding enzyme C-terminal domain CTP_transf_1 PF01148.20 gi|327311787|ref|YP_004338684.1| - 0.013 15.2 2.3 0.014 15.2 2.3 1.4 1 1 0 1 1 1 0 Cytidylyltransferase family PaREP1 PF05942.11 gi|327311788|ref|YP_004338685.1| - 3.1e-22 78.7 1.5 4.2e-22 78.3 1.5 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family End3 PF12761.7 gi|327311788|ref|YP_004338685.1| - 0.095 12.9 0.2 0.14 12.3 0.2 1.2 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 PIN_6 PF17146.4 gi|327311789|ref|YP_004338686.1| - 1.7e-08 34.9 0.3 1.6e-07 31.7 0.3 2.0 1 1 0 1 1 1 1 PIN domain of ribonuclease PIN PF01850.21 gi|327311789|ref|YP_004338686.1| - 3.7e-05 24.2 0.7 0.00011 22.7 0.5 1.7 1 1 1 2 2 2 1 PIN domain PIN_5 PF08745.11 gi|327311789|ref|YP_004338686.1| - 0.00065 19.2 0.2 0.003 17.0 0.1 1.8 2 0 0 2 2 2 1 PINc domain ribonuclease PIN_9 PF18477.1 gi|327311789|ref|YP_004338686.1| - 0.0086 16.4 0.3 0.012 16.0 0.3 1.2 1 0 0 1 1 1 1 PIN like domain PIN_2 PF10130.9 gi|327311789|ref|YP_004338686.1| - 0.055 13.7 0.0 0.063 13.5 0.0 1.2 1 0 0 1 1 1 0 PIN domain DUF4411 PF14367.6 gi|327311789|ref|YP_004338686.1| - 0.12 12.2 0.0 0.51 10.2 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) NAD_kinase PF01513.21 gi|327311790|ref|YP_004338687.1| - 7.9e-16 58.1 1.6 2.3e-14 53.3 1.6 2.0 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|327311790|ref|YP_004338687.1| - 0.07 12.7 0.2 0.12 12.0 0.2 1.5 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF2710 PF10921.8 gi|327311790|ref|YP_004338687.1| - 0.091 13.2 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) DUF86 PF01934.17 gi|327311791|ref|YP_004338688.1| - 9.3e-16 57.8 0.0 1.1e-15 57.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|327311792|ref|YP_004338689.1| - 2.7e-05 24.2 0.0 4.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HicB_lk_antitox PF15919.5 gi|327311793|ref|YP_004338690.1| - 0.058 13.5 0.1 0.067 13.3 0.1 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system Mut7-C PF01927.16 gi|327311795|ref|YP_004338692.1| - 1.4e-28 99.8 0.4 1.9e-28 99.4 0.4 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-C2H2_3 PF13878.6 gi|327311795|ref|YP_004338692.1| - 0.0055 16.5 1.0 1.1 9.1 0.1 2.4 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO Haem_oxygenas_2 PF14518.6 gi|327311795|ref|YP_004338692.1| - 0.013 15.3 0.0 0.43 10.3 0.0 2.1 1 1 1 2 2 2 0 Iron-containing redox enzyme zinc_ribbon_2 PF13240.6 gi|327311795|ref|YP_004338692.1| - 0.022 14.5 4.6 0.88 9.4 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|327311795|ref|YP_004338692.1| - 0.049 13.8 3.2 1.8 8.8 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain ADK_lid PF05191.14 gi|327311795|ref|YP_004338692.1| - 0.058 13.4 0.8 1.3 9.1 0.1 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.6 gi|327311795|ref|YP_004338692.1| - 0.062 12.7 7.8 1.2 8.6 0.2 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|327311795|ref|YP_004338692.1| - 0.076 12.9 3.1 5.1 7.1 0.4 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|327311795|ref|YP_004338692.1| - 0.18 12.5 3.5 1.8 9.3 0.7 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|327311795|ref|YP_004338692.1| - 0.22 11.1 3.4 2.2 7.8 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|327311795|ref|YP_004338692.1| - 0.67 9.3 8.0 4.3 6.8 8.0 2.2 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-RRN7 PF11781.8 gi|327311795|ref|YP_004338692.1| - 2 8.2 6.9 21 4.9 2.9 2.5 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PhnA_Zn_Ribbon PF08274.12 gi|327311795|ref|YP_004338692.1| - 2.4 8.2 8.5 30 4.7 7.4 2.7 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf_C2H2_10 PF18414.1 gi|327311795|ref|YP_004338692.1| - 3 7.4 5.7 4.7 6.8 0.2 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger OrfB_Zn_ribbon PF07282.11 gi|327311795|ref|YP_004338692.1| - 6.2 6.8 6.6 16 5.5 5.3 2.3 2 1 0 2 2 2 0 Putative transposase DNA-binding domain FbpA PF05833.11 gi|327311796|ref|YP_004338693.1| - 2e-31 109.3 1.6 3.4e-31 108.5 1.6 1.3 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|327311796|ref|YP_004338693.1| - 1.5e-20 73.9 0.0 2.7e-20 73.0 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|327311796|ref|YP_004338693.1| - 0.0072 16.5 0.0 0.02 15.1 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain DUF5082 PF16888.5 gi|327311796|ref|YP_004338693.1| - 0.13 12.5 7.3 1.3 9.3 2.4 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) TMCO5 PF14992.6 gi|327311796|ref|YP_004338693.1| - 0.16 11.5 8.0 0.64 9.5 1.7 2.1 2 0 0 2 2 2 0 TMCO5 family CASP_C PF08172.12 gi|327311796|ref|YP_004338693.1| - 0.26 10.6 5.6 6.3 6.1 0.1 2.4 2 0 0 2 2 2 0 CASP C terminal TMF_DNA_bd PF12329.8 gi|327311796|ref|YP_004338693.1| - 0.28 11.2 16.8 0.17 11.9 4.2 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding MapZ_EC1 PF18041.1 gi|327311796|ref|YP_004338693.1| - 0.48 10.7 6.6 0.067 13.4 2.4 1.7 2 0 0 2 2 1 0 MapZ extracellular domain 1 DUF4094 PF13334.6 gi|327311796|ref|YP_004338693.1| - 0.5 10.8 2.4 6.5 7.2 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) DLP_helical PF18709.1 gi|327311796|ref|YP_004338693.1| - 0.6 9.2 10.8 0.34 10.1 3.2 2.2 2 0 0 2 2 2 0 Dynamin-like helical domain CENP-H PF05837.12 gi|327311796|ref|YP_004338693.1| - 1 9.8 10.0 2.2 8.7 1.1 2.8 2 0 0 2 2 2 0 Centromere protein H (CENP-H) TMPIT PF07851.13 gi|327311796|ref|YP_004338693.1| - 1.3 8.2 4.8 5.5 6.1 0.1 2.2 2 0 0 2 2 2 0 TMPIT-like protein AAA_13 PF13166.6 gi|327311796|ref|YP_004338693.1| - 1.6 7.3 10.8 2.3 6.8 10.8 1.1 1 0 0 1 1 1 0 AAA domain MCU PF04678.13 gi|327311796|ref|YP_004338693.1| - 2 8.5 5.6 5 7.2 1.1 2.3 2 0 0 2 2 2 0 Mitochondrial calcium uniporter ApoLp-III PF07464.11 gi|327311796|ref|YP_004338693.1| - 2.1 8.4 4.6 11 6.1 0.3 2.5 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) TPR_MLP1_2 PF07926.12 gi|327311796|ref|YP_004338693.1| - 2.4 8.2 19.0 1.7 8.7 5.6 2.6 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein FlaC_arch PF05377.11 gi|327311796|ref|YP_004338693.1| - 2.7 8.5 4.4 7.3 7.1 0.7 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) UPF0449 PF15136.6 gi|327311796|ref|YP_004338693.1| - 2.8 8.4 12.2 7.1 7.2 0.4 3.3 2 1 1 3 3 3 0 Uncharacterised protein family UPF0449 GrpE PF01025.19 gi|327311796|ref|YP_004338693.1| - 3 7.5 12.4 0.91 9.2 2.2 2.6 2 0 0 2 2 2 0 GrpE Macoilin PF09726.9 gi|327311796|ref|YP_004338693.1| - 3.2 6.2 8.6 6.1 5.3 8.6 1.5 1 0 0 1 1 1 0 Macoilin family Prefoldin PF02996.17 gi|327311796|ref|YP_004338693.1| - 3.8 7.4 12.9 3.1 7.7 1.9 2.8 2 1 1 3 3 3 0 Prefoldin subunit DUF4337 PF14235.6 gi|327311796|ref|YP_004338693.1| - 3.9 7.6 10.1 6.4 6.9 2.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Ax_dynein_light PF10211.9 gi|327311796|ref|YP_004338693.1| - 3.9 7.4 10.2 4 7.3 2.2 2.3 2 0 0 2 2 2 0 Axonemal dynein light chain DUF4140 PF13600.6 gi|327311796|ref|YP_004338693.1| - 4.1 7.9 14.5 3.6 8.1 0.9 3.0 3 1 0 3 3 2 0 N-terminal domain of unknown function (DUF4140) DUF724 PF05266.14 gi|327311796|ref|YP_004338693.1| - 4.1 7.2 8.9 12 5.6 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Prefoldin_2 PF01920.20 gi|327311796|ref|YP_004338693.1| - 5 7.1 10.9 4.2 7.4 2.3 2.5 2 0 0 2 2 2 0 Prefoldin subunit OmpH PF03938.14 gi|327311796|ref|YP_004338693.1| - 5.2 7.4 16.1 1.7 9.0 5.2 2.3 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Spc24 PF08286.11 gi|327311796|ref|YP_004338693.1| - 6.2 7.1 6.9 27 5.1 0.2 2.5 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 AP_endonuc_2 PF01261.24 gi|327311797|ref|YP_004338694.1| - 1.3e-22 80.2 1.2 1.8e-22 79.8 0.8 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|327311797|ref|YP_004338694.1| - 0.016 14.5 0.0 0.024 13.9 0.0 1.2 1 0 0 1 1 1 0 UV-endonuclease UvdE TruD PF01142.18 gi|327311799|ref|YP_004338696.1| - 9.7e-100 334.3 0.0 1.2e-98 330.7 0.0 1.9 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF362 PF04015.12 gi|327311800|ref|YP_004338697.1| - 4.9e-05 23.7 0.0 6.7e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Ribosomal_L14 PF00238.19 gi|327311801|ref|YP_004338698.1| - 3e-35 121.0 0.7 3.6e-35 120.7 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e RNase_II_C_S1 PF18614.1 gi|327311801|ref|YP_004338698.1| - 0.013 15.4 0.4 0.013 15.4 0.4 2.2 2 1 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain AdoHcyase PF05221.17 gi|327311802|ref|YP_004338699.1| - 3.7e-70 236.4 0.0 5.4e-70 235.9 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|327311802|ref|YP_004338699.1| - 2.1e-52 177.4 0.1 3.5e-52 176.7 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|327311802|ref|YP_004338699.1| - 9.1e-07 28.4 0.1 2.4e-06 27.0 0.1 1.8 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|327311802|ref|YP_004338699.1| - 2.5e-05 23.9 0.2 0.0002 21.0 0.1 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AbiEi_4 PF13338.6 gi|327311803|ref|YP_004338700.1| - 0.015 15.4 0.7 0.042 14.0 0.7 1.8 1 1 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin Pyr_redox_3 PF13738.6 gi|327311804|ref|YP_004338701.1| - 0.063 12.5 0.1 0.065 12.5 0.1 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase B3_4 PF03483.17 gi|327311805|ref|YP_004338702.1| - 2.2e-21 76.3 0.0 3.9e-21 75.5 0.0 1.4 2 0 0 2 2 2 1 B3/4 domain Glyco_hydro_108 PF05838.12 gi|327311805|ref|YP_004338702.1| - 0.0021 18.5 0.0 0.0032 17.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase 108 Zeta_toxin PF06414.12 gi|327311806|ref|YP_004338703.1| - 4.9e-05 22.7 0.0 0.00011 21.6 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin CbiA PF01656.23 gi|327311806|ref|YP_004338703.1| - 0.00042 20.4 0.8 0.0015 18.5 0.5 2.0 1 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|327311806|ref|YP_004338703.1| - 0.0071 16.2 0.0 0.034 14.0 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.13 gi|327311806|ref|YP_004338703.1| - 0.0082 15.3 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) ParA PF10609.9 gi|327311806|ref|YP_004338703.1| - 0.015 14.7 0.2 0.033 13.6 0.2 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|327311806|ref|YP_004338703.1| - 0.017 14.9 0.1 0.037 13.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|327311806|ref|YP_004338703.1| - 0.021 14.9 0.1 0.049 13.7 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain cobW PF02492.19 gi|327311806|ref|YP_004338703.1| - 0.036 13.6 0.0 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Torsin PF06309.11 gi|327311806|ref|YP_004338703.1| - 0.042 13.9 0.0 0.083 13.0 0.0 1.4 1 0 0 1 1 1 0 Torsin Thymidylate_kin PF02223.17 gi|327311806|ref|YP_004338703.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase AAA_25 PF13481.6 gi|327311806|ref|YP_004338703.1| - 0.064 12.8 0.1 2 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|327311806|ref|YP_004338703.1| - 0.2 11.4 0.1 1.9 8.3 0.0 2.4 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Metallophos_2 PF12850.7 gi|327311807|ref|YP_004338704.1| - 4.6e-08 33.4 0.0 9.2e-08 32.5 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|327311807|ref|YP_004338704.1| - 0.015 15.8 0.5 0.13 12.8 0.0 2.1 2 1 0 2 2 2 0 Calcineurin-like phosphoesterase Ribonuc_red_lgC PF02867.15 gi|327311809|ref|YP_004338706.1| - 1.1e-145 486.2 0.0 1.3e-145 485.9 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|327311809|ref|YP_004338706.1| - 1e-11 44.6 0.0 1.9e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|327311809|ref|YP_004338706.1| - 0.00021 21.8 1.1 0.00036 21.1 0.1 2.0 2 0 0 2 2 2 1 ATP cone domain ApoC-I PF04691.12 gi|327311809|ref|YP_004338706.1| - 0.076 13.0 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 Apolipoprotein C-I (ApoC-1) YrhC PF14143.6 gi|327311810|ref|YP_004338707.1| - 0.01 15.9 3.9 0.43 10.7 0.1 2.5 2 0 0 2 2 2 0 YrhC-like protein tRNA-synt_2b PF00587.25 gi|327311812|ref|YP_004338709.1| - 2.7e-31 108.9 0.0 4.2e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|327311812|ref|YP_004338709.1| - 1.3e-19 70.4 2.4 2.8e-19 69.4 2.4 1.6 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Laminin_I PF06008.14 gi|327311812|ref|YP_004338709.1| - 0.01 15.6 0.4 0.016 15.0 0.4 1.2 1 0 0 1 1 1 0 Laminin Domain I FlxA PF14282.6 gi|327311812|ref|YP_004338709.1| - 0.021 14.8 0.8 0.034 14.1 0.8 1.2 1 0 0 1 1 1 0 FlxA-like protein Dynamitin PF04912.14 gi|327311812|ref|YP_004338709.1| - 0.069 12.5 0.9 0.1 11.9 0.9 1.1 1 0 0 1 1 1 0 Dynamitin ZapB PF06005.12 gi|327311812|ref|YP_004338709.1| - 0.074 13.5 2.8 0.23 11.9 2.8 1.9 1 1 0 1 1 1 0 Cell division protein ZapB V-SNARE PF05008.15 gi|327311812|ref|YP_004338709.1| - 0.082 13.3 1.2 0.22 11.9 1.2 1.7 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus Ax_dynein_light PF10211.9 gi|327311812|ref|YP_004338709.1| - 0.085 12.8 0.5 0.15 12.0 0.5 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain APG6_N PF17675.1 gi|327311812|ref|YP_004338709.1| - 0.089 13.3 1.9 0.18 12.4 1.9 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region TrmO_C PF18389.1 gi|327311812|ref|YP_004338709.1| - 0.1 12.7 0.1 0.33 11.1 0.1 1.9 1 0 0 1 1 1 0 TrmO C-terminal domain KASH_CCD PF14662.6 gi|327311812|ref|YP_004338709.1| - 0.14 12.0 2.1 0.25 11.2 2.1 1.3 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Cep57_MT_bd PF06657.13 gi|327311812|ref|YP_004338709.1| - 0.22 12.0 4.2 0.54 10.7 4.2 1.7 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 FapA PF03961.13 gi|327311812|ref|YP_004338709.1| - 0.26 9.8 0.6 0.43 9.1 0.6 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A CTP_transf_like PF01467.26 gi|327311813|ref|YP_004338710.1| - 8.3e-09 35.8 0.0 1.6e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|327311813|ref|YP_004338710.1| - 0.047 12.9 0.0 3.4 6.8 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase DNA_RNApol_7kD PF03604.13 gi|327311814|ref|YP_004338711.1| - 0.00011 21.8 4.7 0.00029 20.4 4.7 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.26 gi|327311814|ref|YP_004338711.1| - 0.0028 18.0 2.7 0.11 13.0 0.2 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|327311814|ref|YP_004338711.1| - 0.0033 17.8 0.4 3.2 8.3 0.0 2.1 2 0 0 2 2 2 2 Zinc-finger double domain DZR PF12773.7 gi|327311814|ref|YP_004338711.1| - 0.0049 16.9 0.1 0.0075 16.3 0.1 1.4 1 1 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|327311814|ref|YP_004338711.1| - 0.0068 16.4 0.4 3.4 7.7 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|327311814|ref|YP_004338711.1| - 0.0075 16.4 0.3 0.011 15.8 0.3 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DUF2072 PF09845.9 gi|327311814|ref|YP_004338711.1| - 0.0082 16.4 0.1 0.012 15.8 0.1 1.2 1 0 0 1 1 1 1 Zn-ribbon containing protein zf-CSL PF05207.13 gi|327311814|ref|YP_004338711.1| - 0.024 14.4 0.2 0.03 14.0 0.2 1.3 1 0 0 1 1 1 0 CSL zinc finger zf-C2H2_4 PF13894.6 gi|327311814|ref|YP_004338711.1| - 0.027 15.3 1.9 1.5 9.8 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger HypA PF01155.19 gi|327311814|ref|YP_004338711.1| - 0.037 14.0 0.1 0.037 14.0 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|327311814|ref|YP_004338711.1| - 0.078 12.9 0.3 0.11 12.4 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 gi|327311814|ref|YP_004338711.1| - 0.18 11.4 1.6 0.87 9.2 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-BED PF02892.15 gi|327311814|ref|YP_004338711.1| - 2.7 8.1 5.0 3.2 7.8 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger Arginase PF00491.21 gi|327311815|ref|YP_004338712.1| - 4.1e-47 161.0 0.0 5e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Arginase family HGTP_anticodon PF03129.20 gi|327311816|ref|YP_004338713.1| - 6.2e-20 71.1 0.0 1.6e-19 69.8 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|327311816|ref|YP_004338713.1| - 1.2e-06 28.6 0.0 4.2e-05 23.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-C2HC_2 PF13913.6 gi|327311816|ref|YP_004338713.1| - 0.03 14.2 0.1 0.03 14.2 0.1 1.8 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.10 gi|327311816|ref|YP_004338713.1| - 0.064 13.4 1.6 8.7 6.6 0.0 2.8 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|327311816|ref|YP_004338713.1| - 0.17 11.9 0.0 0.4 10.7 0.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon Rad50_zn_hook PF04423.14 gi|327311816|ref|YP_004338713.1| - 0.18 11.7 0.9 22 5.0 0.0 2.6 2 0 0 2 2 2 0 Rad50 zinc hook motif zinc_ribbon_4 PF13717.6 gi|327311816|ref|YP_004338713.1| - 1.2 9.1 3.5 15 5.6 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|327311816|ref|YP_004338713.1| - 1.2 8.6 4.7 2.7 7.5 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Molydop_binding PF01568.21 gi|327311817|ref|YP_004338714.1| - 1e-05 25.5 0.1 0.00017 21.6 0.0 2.0 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|327311817|ref|YP_004338714.1| - 0.0077 16.4 0.1 0.25 11.5 0.0 2.1 1 1 1 2 2 2 2 Cell division protein 48 (CDC48), N-terminal domain HHH_7 PF14635.6 gi|327311817|ref|YP_004338714.1| - 0.16 12.3 0.0 0.19 12.1 0.0 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif tRNA_int_endo PF01974.17 gi|327311818|ref|YP_004338715.1| - 6.1e-25 87.1 0.1 1.4e-24 86.0 0.0 1.6 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|327311818|ref|YP_004338715.1| - 4.1e-22 77.6 2.8 6.3e-22 77.0 2.8 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|327311818|ref|YP_004338715.1| - 0.0012 19.0 0.3 0.0027 17.8 0.3 1.6 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term Nup35_RRM_2 PF14605.6 gi|327311818|ref|YP_004338715.1| - 0.14 12.1 0.1 0.72 9.9 0.1 2.0 1 1 1 2 2 2 0 Nup53/35/40-type RNA recognition motif HSP20 PF00011.21 gi|327311819|ref|YP_004338716.1| - 1.5e-09 37.9 0.0 1.8e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|327311819|ref|YP_004338716.1| - 1.1e-06 28.1 0.0 6.3e-06 25.7 0.0 2.1 1 1 0 1 1 1 1 HSP20-like domain found in ArsA zinc_ribbon_4 PF13717.6 gi|327311820|ref|YP_004338717.1| - 2.4e-07 30.6 2.2 0.00087 19.2 0.5 2.2 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|327311820|ref|YP_004338717.1| - 6.5e-06 26.1 4.0 0.023 14.8 0.4 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|327311820|ref|YP_004338717.1| - 1.9e-05 23.9 2.7 0.053 12.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|327311820|ref|YP_004338717.1| - 4.2e-05 23.6 0.9 0.2 11.7 0.1 2.0 1 1 1 2 2 2 2 CpXC protein RNA_POL_M_15KD PF02150.16 gi|327311820|ref|YP_004338717.1| - 0.00012 21.8 0.1 0.00022 21.0 0.1 1.4 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|327311820|ref|YP_004338717.1| - 0.00027 21.0 2.1 0.00064 19.8 2.1 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|327311820|ref|YP_004338717.1| - 0.0004 20.1 5.7 0.012 15.4 1.6 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|327311820|ref|YP_004338717.1| - 0.00088 18.8 1.0 0.77 9.4 0.1 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Lar_restr_allev PF14354.6 gi|327311820|ref|YP_004338717.1| - 0.0011 19.3 0.9 0.0011 19.3 0.9 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf_C2H2_10 PF18414.1 gi|327311820|ref|YP_004338717.1| - 0.0011 18.4 7.2 0.012 15.2 0.6 2.2 2 0 0 2 2 2 1 C2H2 type zinc-finger Zn_ribbon_17 PF17120.5 gi|327311820|ref|YP_004338717.1| - 0.0015 18.1 0.3 0.0017 18.0 0.3 1.1 1 0 0 1 1 1 1 Zinc-ribbon, C4HC2 type IBR PF01485.21 gi|327311820|ref|YP_004338717.1| - 0.0018 18.4 1.1 0.0027 17.9 1.1 1.3 1 1 0 1 1 1 1 IBR domain, a half RING-finger domain PhnA_Zn_Ribbon PF08274.12 gi|327311820|ref|YP_004338717.1| - 0.0019 18.1 1.4 0.29 11.1 0.0 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|327311820|ref|YP_004338717.1| - 0.0027 17.3 5.4 0.58 10.0 0.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-IS66 PF13005.7 gi|327311820|ref|YP_004338717.1| - 0.0029 18.0 0.5 0.27 11.7 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|327311820|ref|YP_004338717.1| - 0.0031 17.5 0.1 0.0036 17.3 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYDLN_acid PF09538.10 gi|327311820|ref|YP_004338717.1| - 0.0032 18.1 0.6 1.1 9.9 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) DZR PF12773.7 gi|327311820|ref|YP_004338717.1| - 0.0034 17.4 0.4 0.007 16.4 0.4 1.5 1 1 0 1 1 1 1 Double zinc ribbon DUF4379 PF14311.6 gi|327311820|ref|YP_004338717.1| - 0.0061 16.9 0.8 0.0095 16.3 0.8 1.4 1 0 0 1 1 1 1 Probable Zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|327311820|ref|YP_004338717.1| - 0.0069 16.0 0.5 1.3 8.8 0.1 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain TFIIS_C PF01096.18 gi|327311820|ref|YP_004338717.1| - 0.0084 15.9 2.2 0.69 9.8 0.2 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Trm112p PF03966.16 gi|327311820|ref|YP_004338717.1| - 0.0088 16.6 0.4 4.5 7.9 0.0 2.1 2 0 0 2 2 2 0 Trm112p-like protein DUF35_N PF12172.8 gi|327311820|ref|YP_004338717.1| - 0.01 15.7 1.3 0.51 10.3 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|327311820|ref|YP_004338717.1| - 0.011 15.3 3.3 0.15 11.6 3.3 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding ADK_lid PF05191.14 gi|327311820|ref|YP_004338717.1| - 0.013 15.5 0.4 1.2 9.2 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-RING_2 PF13639.6 gi|327311820|ref|YP_004338717.1| - 0.013 15.8 0.4 0.016 15.5 0.4 1.2 1 0 0 1 1 1 0 Ring finger domain Acetone_carb_G PF08882.11 gi|327311820|ref|YP_004338717.1| - 0.015 15.4 1.0 0.081 13.1 0.2 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit DUF1610 PF07754.11 gi|327311820|ref|YP_004338717.1| - 0.019 14.9 3.7 2.2 8.3 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Cys_rich_CPXG PF14255.6 gi|327311820|ref|YP_004338717.1| - 0.021 14.7 1.8 0.65 9.9 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-C4_Topoisom PF01396.19 gi|327311820|ref|YP_004338717.1| - 0.025 14.4 2.8 2.4 8.0 0.3 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|327311820|ref|YP_004338717.1| - 0.026 15.2 0.5 5.8 7.7 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Elf1 PF05129.13 gi|327311820|ref|YP_004338717.1| - 0.031 14.3 0.1 0.04 14.0 0.1 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like YhfH PF14149.6 gi|327311820|ref|YP_004338717.1| - 0.033 14.2 0.9 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein YacG PF03884.14 gi|327311820|ref|YP_004338717.1| - 0.033 13.9 0.5 5.8 6.7 0.1 2.2 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG DNA_RNApol_7kD PF03604.13 gi|327311820|ref|YP_004338717.1| - 0.033 13.8 0.7 6.9 6.5 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit NRDD PF13597.6 gi|327311820|ref|YP_004338717.1| - 0.037 12.8 0.3 0.041 12.7 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-H2C2_2 PF13465.6 gi|327311820|ref|YP_004338717.1| - 0.039 14.4 4.2 1.7 9.2 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Cys_rich_KTR PF14205.6 gi|327311820|ref|YP_004338717.1| - 0.047 13.5 0.9 0.12 12.1 0.9 1.7 1 1 0 1 1 1 0 Cysteine-rich KTR DUF983 PF06170.12 gi|327311820|ref|YP_004338717.1| - 0.047 14.1 0.3 2.1 8.8 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Zn_Tnp_IS1595 PF12760.7 gi|327311820|ref|YP_004338717.1| - 0.048 13.6 5.3 1.1 9.3 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|327311820|ref|YP_004338717.1| - 0.054 13.2 3.7 2 8.2 0.4 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-C2H2_12 PF18112.1 gi|327311820|ref|YP_004338717.1| - 0.054 14.0 4.4 1.6 9.3 0.9 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Nudix_N_2 PF14803.6 gi|327311820|ref|YP_004338717.1| - 0.063 13.2 1.9 2.2 8.2 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-tcix PF14952.6 gi|327311820|ref|YP_004338717.1| - 0.065 12.9 5.0 2.2 7.9 0.7 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.11 gi|327311820|ref|YP_004338717.1| - 0.08 12.9 2.3 7.3 6.6 0.1 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|327311820|ref|YP_004338717.1| - 0.089 12.9 3.6 1.3 9.2 0.2 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-DNL PF05180.12 gi|327311820|ref|YP_004338717.1| - 0.094 12.7 0.3 0.12 12.4 0.3 1.1 1 0 0 1 1 1 0 DNL zinc finger TackOD1 PF18551.1 gi|327311820|ref|YP_004338717.1| - 0.096 12.3 0.1 0.11 12.1 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Mu-like_Com PF10122.9 gi|327311820|ref|YP_004338717.1| - 0.098 12.1 5.3 0.84 9.1 0.4 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com T4_baseplate PF12322.8 gi|327311820|ref|YP_004338717.1| - 0.11 12.0 0.6 7.2 6.0 0.1 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein zf-C2H2 PF00096.26 gi|327311820|ref|YP_004338717.1| - 0.12 12.9 4.1 6.4 7.4 0.7 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-HYPF PF07503.12 gi|327311820|ref|YP_004338717.1| - 0.18 11.6 2.3 1.9 8.3 0.3 2.1 2 0 0 2 2 2 0 HypF finger DNA_ligase_ZBD PF03119.16 gi|327311820|ref|YP_004338717.1| - 0.21 11.6 2.8 3.1 7.9 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin_2 PF18073.1 gi|327311820|ref|YP_004338717.1| - 0.22 11.3 3.0 6.7 6.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Rad50_zn_hook PF04423.14 gi|327311820|ref|YP_004338717.1| - 0.22 11.4 1.5 1.8 8.5 0.1 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-TFIIB PF13453.6 gi|327311820|ref|YP_004338717.1| - 0.23 10.8 4.1 4.6 6.7 4.7 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-C2H2_4 PF13894.6 gi|327311820|ref|YP_004338717.1| - 0.24 12.3 1.8 22 6.2 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Terminase_GpA PF05876.12 gi|327311820|ref|YP_004338717.1| - 0.26 9.8 0.7 0.4 9.2 0.7 1.4 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zf-Mss51 PF13824.6 gi|327311820|ref|YP_004338717.1| - 0.54 10.4 5.1 4.9 7.3 0.4 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Anti-TRAP PF15777.5 gi|327311820|ref|YP_004338717.1| - 0.68 9.9 3.4 2.2 8.3 3.4 1.8 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C2HC_2 PF13913.6 gi|327311820|ref|YP_004338717.1| - 0.74 9.8 5.5 9.9 6.2 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ogr_Delta PF04606.12 gi|327311820|ref|YP_004338717.1| - 0.78 9.8 3.5 5.2 7.1 0.2 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_9 PF14369.6 gi|327311820|ref|YP_004338717.1| - 1.2 9.4 6.2 4.4 7.7 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon zinc_ribbon_13 PF09855.9 gi|327311820|ref|YP_004338717.1| - 1.4 9.1 4.3 13 6.1 0.3 2.1 1 1 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) UbiD PF01977.16 gi|327311821|ref|YP_004338718.1| - 1.1e-80 271.6 0.1 1.3e-80 271.3 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RMI2 PF16100.5 gi|327311821|ref|YP_004338718.1| - 0.038 13.8 0.1 0.069 13.0 0.1 1.4 1 0 0 1 1 1 0 RecQ-mediated genome instability protein 2 DUF521 PF04412.13 gi|327311822|ref|YP_004338719.1| - 5.4e-86 288.8 0.0 6.5e-86 288.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF126 PF01989.16 gi|327311823|ref|YP_004338720.1| - 7.8e-21 73.7 0.2 1.1e-20 73.2 0.2 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain AGOG PF09171.10 gi|327311825|ref|YP_004338722.1| - 1.5e-75 253.8 0.0 1.8e-75 253.5 0.0 1.1 1 0 0 1 1 1 1 N-glycosylase/DNA lyase DNA_primase_lrg PF04104.14 gi|327311826|ref|YP_004338723.1| - 5.4e-32 111.2 0.0 1.1e-31 110.2 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit CLP1_P PF16575.5 gi|327311827|ref|YP_004338724.1| - 2.4e-33 115.5 0.0 3.6e-33 114.9 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|327311827|ref|YP_004338724.1| - 4.1e-06 26.9 0.0 5.8e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|327311827|ref|YP_004338724.1| - 0.00048 19.6 0.1 0.0008 18.9 0.1 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MeaB PF03308.16 gi|327311827|ref|YP_004338724.1| - 0.00064 18.8 0.1 0.0011 18.0 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|327311827|ref|YP_004338724.1| - 0.071 12.9 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_31 PF13614.6 gi|327311827|ref|YP_004338724.1| - 0.075 13.0 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Metallophos_2 PF12850.7 gi|327311828|ref|YP_004338725.1| - 1.5e-08 35.0 0.0 2e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|327311828|ref|YP_004338725.1| - 1.9e-08 35.1 0.0 5.4e-08 33.6 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Acetyltransf_1 PF00583.25 gi|327311831|ref|YP_004338728.1| - 6.8e-19 68.2 0.1 8.8e-19 67.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|327311831|ref|YP_004338728.1| - 3e-12 46.8 0.1 4.5e-12 46.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|327311831|ref|YP_004338728.1| - 1.1e-11 44.7 0.0 1.4e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|327311831|ref|YP_004338728.1| - 2.7e-08 34.1 0.2 3.5e-08 33.7 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|327311831|ref|YP_004338728.1| - 9.6e-07 28.7 0.1 1.3e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|327311831|ref|YP_004338728.1| - 0.00012 21.8 0.0 0.00021 21.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain RexA PF15969.5 gi|327311831|ref|YP_004338728.1| - 0.00041 20.0 1.7 0.05 13.2 0.3 2.2 2 0 0 2 2 2 2 Intracellular sensor of Lambda phage, Abi component Acetyltransf_3 PF13302.7 gi|327311831|ref|YP_004338728.1| - 0.0016 19.1 0.0 0.0019 18.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|327311831|ref|YP_004338728.1| - 0.0022 17.7 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_9 PF13527.7 gi|327311831|ref|YP_004338728.1| - 0.0043 17.1 0.0 0.0086 16.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|327311831|ref|YP_004338728.1| - 0.01 15.4 0.3 0.024 14.2 0.2 1.6 1 1 1 2 2 2 0 GNAT acetyltransferase Acetyltransf_18 PF18014.1 gi|327311831|ref|YP_004338728.1| - 0.016 15.0 0.1 0.07 13.0 0.1 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_22 PF13401.6 gi|327311832|ref|YP_004338729.1| - 0.0012 19.1 0.1 1.5 9.1 0.2 3.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|327311832|ref|YP_004338729.1| - 0.0022 18.4 1.9 0.014 15.8 0.2 2.9 2 1 0 2 2 2 1 AAA ATPase domain HD_2 PF12917.7 gi|327311832|ref|YP_004338729.1| - 0.0042 16.9 1.2 0.78 9.5 0.0 2.9 3 0 0 3 3 3 2 HD containing hydrolase-like enzyme AAA PF00004.29 gi|327311832|ref|YP_004338729.1| - 0.049 14.1 0.0 0.16 12.4 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|327311832|ref|YP_004338729.1| - 0.13 11.9 0.0 0.54 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain NurA PF09376.10 gi|327311834|ref|YP_004338731.1| - 0.1 12.3 8.4 0.79 9.4 0.9 2.6 2 1 1 3 3 3 0 NurA domain ssDBP_DBD PF18361.1 gi|327311835|ref|YP_004338732.1| - 9.8e-84 278.4 1.4 1.3e-83 278.0 1.4 1.2 1 0 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain HALZ PF02183.18 gi|327311835|ref|YP_004338732.1| - 3.5e-07 30.3 3.8 9.7e-07 28.9 3.8 1.8 1 0 0 1 1 1 1 Homeobox associated leucine zipper APG6_N PF17675.1 gi|327311835|ref|YP_004338732.1| - 0.0001 22.8 0.9 0.00016 22.2 0.9 1.3 1 0 0 1 1 1 1 Apg6 coiled-coil region HAUS5 PF14817.6 gi|327311835|ref|YP_004338732.1| - 0.00035 19.5 0.8 0.00044 19.1 0.8 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 ZapB PF06005.12 gi|327311835|ref|YP_004338732.1| - 0.00074 19.9 5.0 0.0013 19.1 5.0 1.4 1 0 0 1 1 1 1 Cell division protein ZapB bZIP_Maf PF03131.17 gi|327311835|ref|YP_004338732.1| - 0.0026 18.3 2.4 0.0047 17.4 2.4 1.4 1 0 0 1 1 1 1 bZIP Maf transcription factor Myc-LZ PF02344.15 gi|327311835|ref|YP_004338732.1| - 0.0043 17.1 4.9 0.0043 17.1 4.9 3.2 2 1 1 3 3 3 1 Myc leucine zipper domain DivIC PF04977.15 gi|327311835|ref|YP_004338732.1| - 0.005 16.6 3.6 0.011 15.5 3.6 1.5 1 0 0 1 1 1 1 Septum formation initiator YabA PF06156.13 gi|327311835|ref|YP_004338732.1| - 0.0057 17.3 0.5 0.012 16.3 0.5 1.5 1 0 0 1 1 1 1 Initiation control protein YabA Prefoldin_2 PF01920.20 gi|327311835|ref|YP_004338732.1| - 0.0061 16.5 5.6 0.011 15.7 5.6 1.4 1 0 0 1 1 1 1 Prefoldin subunit Cnn_1N PF07989.11 gi|327311835|ref|YP_004338732.1| - 0.01 16.0 1.7 0.021 15.0 1.7 1.5 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 APC_N_CC PF16689.5 gi|327311835|ref|YP_004338732.1| - 0.014 15.4 4.4 0.028 14.5 4.0 1.7 1 1 0 1 1 1 0 Coiled-coil N-terminus of APC, dimerisation domain bZIP_1 PF00170.21 gi|327311835|ref|YP_004338732.1| - 0.017 15.2 6.7 0.028 14.5 6.7 1.3 1 0 0 1 1 1 0 bZIP transcription factor Seryl_tRNA_N PF02403.22 gi|327311835|ref|YP_004338732.1| - 0.02 15.1 0.9 0.039 14.2 0.9 1.5 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain TolA_bind_tri PF16331.5 gi|327311835|ref|YP_004338732.1| - 0.021 14.9 2.8 0.036 14.1 2.8 1.3 1 0 0 1 1 1 0 TolA binding protein trimerisation bZIP_2 PF07716.15 gi|327311835|ref|YP_004338732.1| - 0.022 14.8 8.9 0.052 13.6 8.9 1.6 1 0 0 1 1 1 0 Basic region leucine zipper AAA_23 PF13476.6 gi|327311835|ref|YP_004338732.1| - 0.023 15.2 0.1 0.025 15.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain NYD-SP28_assoc PF14775.6 gi|327311835|ref|YP_004338732.1| - 0.028 14.5 1.3 0.078 13.1 1.3 1.7 1 0 0 1 1 1 0 Sperm tail C-terminal domain LRRFIP PF09738.9 gi|327311835|ref|YP_004338732.1| - 0.029 13.8 3.8 0.042 13.3 3.8 1.2 1 0 0 1 1 1 0 LRRFIP family Spc7 PF08317.11 gi|327311835|ref|YP_004338732.1| - 0.037 12.9 2.0 0.051 12.5 2.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF3450 PF11932.8 gi|327311835|ref|YP_004338732.1| - 0.038 13.3 1.6 0.053 12.8 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) ADIP PF11559.8 gi|327311835|ref|YP_004338732.1| - 0.049 13.7 3.2 0.07 13.2 3.2 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF1640 PF07798.11 gi|327311835|ref|YP_004338732.1| - 0.07 13.2 4.0 0.17 11.9 4.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DUF4140 PF13600.6 gi|327311835|ref|YP_004338732.1| - 0.082 13.4 0.5 0.16 12.4 0.5 1.5 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) NRBF2 PF08961.10 gi|327311835|ref|YP_004338732.1| - 0.09 12.4 1.8 0.14 11.8 1.8 1.2 1 0 0 1 1 1 0 Nuclear receptor-binding factor 2, autophagy regulator MCC-bdg_PDZ PF10506.9 gi|327311835|ref|YP_004338732.1| - 0.11 12.5 2.4 0.19 11.8 2.4 1.4 1 0 0 1 1 1 0 PDZ domain of MCC-2 bdg protein for Usher syndrome GrpE PF01025.19 gi|327311835|ref|YP_004338732.1| - 0.13 11.9 1.6 0.21 11.2 1.6 1.3 1 0 0 1 1 1 0 GrpE FlaC_arch PF05377.11 gi|327311835|ref|YP_004338732.1| - 0.17 12.3 3.0 0.6 10.5 3.0 1.8 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) Lipoprotein_20 PF13942.6 gi|327311835|ref|YP_004338732.1| - 0.25 11.3 6.2 0.18 11.7 3.8 1.8 1 1 1 2 2 2 0 YfhG lipoprotein SlyX PF04102.12 gi|327311835|ref|YP_004338732.1| - 0.29 11.8 2.9 0.52 11.0 2.9 1.3 1 0 0 1 1 1 0 SlyX Spc24 PF08286.11 gi|327311835|ref|YP_004338732.1| - 0.31 11.3 3.2 0.52 10.6 3.2 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Atg14 PF10186.9 gi|327311835|ref|YP_004338732.1| - 0.32 10.0 2.3 0.4 9.7 2.3 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 PikAIV_N PF18605.1 gi|327311835|ref|YP_004338732.1| - 0.37 10.4 9.1 0.096 12.3 4.8 2.2 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain DUF5320 PF17253.2 gi|327311835|ref|YP_004338732.1| - 1.8 9.7 4.8 0.97 10.5 0.7 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Radical_SAM PF04055.21 gi|327311836|ref|YP_004338733.1| - 6.1e-08 33.2 0.0 1.1e-07 32.5 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|327311836|ref|YP_004338733.1| - 6.6e-05 23.0 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|327311836|ref|YP_004338733.1| - 0.00062 20.0 0.0 0.001 19.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain PucR PF07905.11 gi|327311836|ref|YP_004338733.1| - 0.04 14.2 0.0 0.096 13.0 0.0 1.6 1 0 0 1 1 1 0 Purine catabolism regulatory protein-like family DUF2748 PF10871.8 gi|327311837|ref|YP_004338734.1| - 0.029 13.0 0.0 0.033 12.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2748) TrbC PF04956.13 gi|327311837|ref|YP_004338734.1| - 1.1 9.5 6.7 38 4.6 6.7 2.1 1 1 0 1 1 1 0 TrbC/VIRB2 family RIO1 PF01163.22 gi|327311839|ref|YP_004338736.1| - 5.8e-14 52.1 0.0 7.1e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|327311839|ref|YP_004338736.1| - 3.8e-09 36.8 1.6 5.4e-06 26.5 0.2 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|327311839|ref|YP_004338736.1| - 3.1e-08 33.2 0.0 8.5e-08 31.8 0.0 1.6 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|327311839|ref|YP_004338736.1| - 6.5e-05 22.4 0.0 7.9e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|327311839|ref|YP_004338736.1| - 0.0049 16.5 0.0 0.0061 16.2 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.17 gi|327311839|ref|YP_004338736.1| - 0.079 12.2 0.0 0.19 11.0 0.0 1.6 1 1 0 1 1 1 0 Protein tyrosine kinase HipA_C PF07804.12 gi|327311839|ref|YP_004338736.1| - 0.17 11.5 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 HipA-like C-terminal domain Radical_SAM PF04055.21 gi|327311840|ref|YP_004338737.1| - 1.9e-11 44.6 0.0 3.1e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|327311840|ref|YP_004338737.1| - 5.4e-08 33.2 0.0 9.7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|327311840|ref|YP_004338737.1| - 0.0012 19.0 0.0 0.0034 17.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF72 PF01904.18 gi|327311843|ref|YP_004338740.1| - 3.4e-28 99.3 0.0 4.3e-28 98.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF72 ArsA_HSP20 PF17886.1 gi|327311845|ref|YP_004338742.1| - 0.012 15.1 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 HSP20-like domain found in ArsA DUF3275 PF11679.8 gi|327311845|ref|YP_004338742.1| - 0.11 12.5 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) Asparaginase_2 PF01112.18 gi|327311846|ref|YP_004338743.1| - 6.9e-88 294.6 10.1 7.7e-88 294.4 10.1 1.0 1 0 0 1 1 1 1 Asparaginase S4 PF01479.25 gi|327311847|ref|YP_004338744.1| - 6.7e-17 60.9 0.1 1.4e-16 59.9 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|327311847|ref|YP_004338744.1| - 0.0033 18.3 0.9 0.0054 17.6 0.3 1.7 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain DUF910 PF06014.11 gi|327311847|ref|YP_004338744.1| - 0.11 12.5 0.2 0.44 10.6 0.1 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF910) Ribosomal_S13 PF00416.22 gi|327311848|ref|YP_004338745.1| - 2.3e-34 118.6 0.0 2.6e-34 118.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|327311848|ref|YP_004338745.1| - 0.099 11.4 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Cob_adeno_trans PF01923.18 gi|327311849|ref|YP_004338746.1| - 4.3e-12 46.5 0.0 6.3e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Porphobil_deam PF01379.20 gi|327311850|ref|YP_004338747.1| - 4.3e-62 209.2 0.0 5.5e-62 208.9 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|327311850|ref|YP_004338747.1| - 4.4e-12 46.2 0.1 7.6e-12 45.4 0.1 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain GlutR_N PF05201.15 gi|327311851|ref|YP_004338748.1| - 4.5e-27 94.6 0.0 1.2e-26 93.3 0.0 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|327311851|ref|YP_004338748.1| - 1.3e-19 70.6 0.0 3.1e-19 69.4 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|327311851|ref|YP_004338748.1| - 1.4e-09 38.4 0.8 3.7e-09 37.0 0.1 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|327311851|ref|YP_004338748.1| - 4.8e-05 23.6 0.3 0.00026 21.3 0.1 2.2 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|327311851|ref|YP_004338748.1| - 5.7e-05 23.3 0.0 0.00014 22.0 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|327311851|ref|YP_004338748.1| - 0.00033 20.1 0.0 0.00068 19.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|327311851|ref|YP_004338748.1| - 0.0047 17.2 0.1 0.018 15.3 0.1 2.0 1 0 0 1 1 1 1 TrkA-N domain ThiF PF00899.21 gi|327311851|ref|YP_004338748.1| - 0.01 15.2 1.3 0.025 13.9 1.2 1.6 2 1 0 2 2 2 0 ThiF family Tex_N PF09371.10 gi|327311851|ref|YP_004338748.1| - 0.016 14.9 2.6 0.029 14.0 2.1 1.8 2 0 0 2 2 2 0 Tex-like protein N-terminal domain AlaDh_PNT_C PF01262.21 gi|327311851|ref|YP_004338748.1| - 0.016 14.5 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.6 gi|327311851|ref|YP_004338748.1| - 0.017 15.0 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H-binding ApbA PF02558.16 gi|327311851|ref|YP_004338748.1| - 0.033 13.8 0.2 0.057 13.1 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|327311851|ref|YP_004338748.1| - 0.039 13.5 0.0 0.076 12.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DUF1104 PF06518.11 gi|327311851|ref|YP_004338748.1| - 0.15 12.4 1.9 8.6 6.8 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1104) Aminotran_3 PF00202.21 gi|327311852|ref|YP_004338749.1| - 3.2e-63 213.8 0.0 4e-63 213.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|327311852|ref|YP_004338749.1| - 0.079 12.1 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II TP_methylase PF00590.20 gi|327311853|ref|YP_004338750.1| - 2.1e-47 161.8 0.1 2.4e-47 161.6 0.1 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HEM4 PF02602.15 gi|327311854|ref|YP_004338751.1| - 6.7e-19 68.2 0.8 8.7e-19 67.8 0.8 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD UDPG_MGDP_dh_C PF03720.15 gi|327311854|ref|YP_004338751.1| - 0.15 12.5 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.6 gi|327311855|ref|YP_004338752.1| - 3.7e-22 78.7 0.3 2.1e-21 76.3 0.2 1.9 2 0 0 2 2 2 1 Putative NAD(P)-binding Rossmann-like PF10727.9 gi|327311855|ref|YP_004338752.1| - 8.1e-05 22.5 1.6 0.00013 21.8 0.5 1.8 1 1 1 2 2 2 1 Rossmann-like domain CysG_dimeriser PF10414.9 gi|327311855|ref|YP_004338752.1| - 0.00012 21.7 2.0 0.00012 21.7 2.0 1.9 2 0 0 2 2 2 1 Sirohaem synthase dimerisation region AlaDh_PNT_C PF01262.21 gi|327311855|ref|YP_004338752.1| - 0.00013 21.4 0.3 0.00022 20.6 0.3 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|327311855|ref|YP_004338752.1| - 0.00039 19.8 0.0 0.0006 19.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|327311855|ref|YP_004338752.1| - 0.0031 18.0 0.2 0.0052 17.3 0.2 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|327311855|ref|YP_004338752.1| - 0.0093 15.9 1.2 0.027 14.4 0.5 2.0 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|327311855|ref|YP_004338752.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|327311855|ref|YP_004338752.1| - 0.027 13.7 0.4 0.041 13.1 0.4 1.2 1 0 0 1 1 1 0 FAD binding domain Flavodoxin_1 PF00258.25 gi|327311855|ref|YP_004338752.1| - 0.034 14.4 0.1 0.11 12.7 0.0 1.9 2 0 0 2 2 2 0 Flavodoxin NAD_Gly3P_dh_N PF01210.23 gi|327311855|ref|YP_004338752.1| - 0.057 13.4 0.7 0.44 10.5 0.7 2.1 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|327311855|ref|YP_004338752.1| - 0.082 13.4 0.3 0.56 10.7 0.3 2.1 1 1 0 1 1 1 0 XdhC Rossmann domain IlvN PF07991.12 gi|327311855|ref|YP_004338752.1| - 0.097 12.2 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain LIG3_BRCT PF16759.5 gi|327311855|ref|YP_004338752.1| - 0.12 12.7 0.0 0.25 11.7 0.0 1.5 1 0 0 1 1 1 0 DNA ligase 3 BRCT domain Pyr_redox_2 PF07992.14 gi|327311855|ref|YP_004338752.1| - 0.15 11.2 0.8 0.36 10.0 0.5 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327311855|ref|YP_004338752.1| - 0.23 12.0 2.3 0.9 10.1 1.2 2.4 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ALAD PF00490.21 gi|327311856|ref|YP_004338753.1| - 6.9e-140 465.7 0.0 7.8e-140 465.5 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Ribosomal_S3_C PF00189.20 gi|327311857|ref|YP_004338754.1| - 1.1e-18 67.5 2.4 1.5e-18 67.0 2.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|327311857|ref|YP_004338754.1| - 3.9e-12 45.8 1.3 6.6e-12 45.1 0.4 1.8 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|327311857|ref|YP_004338754.1| - 0.012 15.5 0.6 0.025 14.4 0.4 1.7 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.23 gi|327311858|ref|YP_004338755.1| - 2.2e-15 56.4 4.6 2.6e-15 56.1 4.6 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein Enkurin PF13864.6 gi|327311858|ref|YP_004338755.1| - 0.048 14.1 0.3 0.064 13.7 0.3 1.2 1 0 0 1 1 1 0 Calmodulin-binding SPATA19 PF15212.6 gi|327311858|ref|YP_004338755.1| - 0.1 12.8 0.1 0.1 12.8 0.1 1.2 1 0 0 1 1 1 0 Spermatogenesis-associated protein 19, mitochondrial UPF0086 PF01868.16 gi|327311859|ref|YP_004338756.1| - 0.012 15.5 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function UPF0086 MTHFR PF02219.17 gi|327311860|ref|YP_004338757.1| - 0.0017 17.7 0.0 0.0023 17.3 0.0 1.2 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase V_ATPase_I PF01496.19 gi|327311861|ref|YP_004338758.1| - 7.5e-24 83.7 6.1 1.7e-19 69.3 0.0 2.8 3 1 0 3 3 3 2 V-type ATPase 116kDa subunit family SesA PF17107.5 gi|327311861|ref|YP_004338758.1| - 0.013 15.7 0.2 1.1 9.4 0.0 2.8 3 0 0 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases H_PPase PF03030.16 gi|327311862|ref|YP_004338759.1| - 8.7e-240 797.8 38.6 1e-239 797.6 38.6 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase GTP_EFTU PF00009.27 gi|327311863|ref|YP_004338760.1| - 9.3e-20 71.0 0.0 1.5e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|327311863|ref|YP_004338760.1| - 2.8e-06 27.6 0.6 8.4e-06 26.1 0.6 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|327311863|ref|YP_004338760.1| - 0.0012 19.1 0.0 0.0033 17.7 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain SKG6 PF08693.10 gi|327311863|ref|YP_004338760.1| - 0.0062 15.9 3.0 0.018 14.4 3.0 1.7 1 0 0 1 1 1 1 Transmembrane alpha-helix domain MMR_HSR1 PF01926.23 gi|327311863|ref|YP_004338760.1| - 0.027 14.6 0.0 0.094 12.8 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|327311863|ref|YP_004338760.1| - 0.12 12.1 0.1 3 7.6 0.0 2.8 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation GTP_EFTU_D4 PF14578.6 gi|327311863|ref|YP_004338760.1| - 1.3 9.0 6.3 0.9 9.5 1.0 3.1 3 0 0 3 3 3 0 Elongation factor Tu domain 4 Cas_Cas4 PF01930.17 gi|327311864|ref|YP_004338761.1| - 1.8e-17 63.9 0.1 4.3e-17 62.7 0.1 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|327311864|ref|YP_004338761.1| - 7.1e-08 32.7 0.9 4e-05 23.7 0.9 2.8 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|327311864|ref|YP_004338761.1| - 9.8e-05 22.7 0.1 0.00015 22.1 0.1 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|327311864|ref|YP_004338761.1| - 0.00034 20.6 0.1 0.00057 19.9 0.1 1.3 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) NucS PF01939.16 gi|327311864|ref|YP_004338761.1| - 0.0052 16.2 0.2 0.007 15.7 0.2 1.2 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|327311864|ref|YP_004338761.1| - 0.046 13.6 0.1 0.078 12.8 0.1 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain CCG PF02754.16 gi|327311865|ref|YP_004338762.1| - 2.3e-25 88.6 0.4 2.6e-13 50.0 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|327311865|ref|YP_004338762.1| - 1.2e-10 41.4 4.9 1.2e-10 41.4 4.9 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|327311865|ref|YP_004338762.1| - 2.1e-09 37.4 5.3 2.1e-09 37.4 5.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|327311865|ref|YP_004338762.1| - 2.1e-09 37.7 5.4 7.7e-09 35.9 5.6 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327311865|ref|YP_004338762.1| - 1e-07 32.8 4.5 3.2e-07 31.2 4.5 1.9 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|327311865|ref|YP_004338762.1| - 2.6e-05 23.8 16.8 0.0016 18.2 3.1 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|327311865|ref|YP_004338762.1| - 5.2e-05 23.1 13.7 0.0065 16.5 3.4 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|327311865|ref|YP_004338762.1| - 5.3e-05 23.4 12.1 0.063 13.8 1.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|327311865|ref|YP_004338762.1| - 6.4e-05 23.0 7.7 0.012 15.8 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327311865|ref|YP_004338762.1| - 0.00031 21.2 11.8 0.0012 19.3 10.4 2.6 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327311865|ref|YP_004338762.1| - 0.0018 18.3 18.3 0.0081 16.2 4.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|327311865|ref|YP_004338762.1| - 0.0019 18.4 3.2 0.8 9.9 0.1 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|327311865|ref|YP_004338762.1| - 0.0024 18.4 17.4 0.0072 16.9 14.2 2.8 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|327311865|ref|YP_004338762.1| - 0.009 16.9 19.3 0.083 13.9 4.6 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|327311865|ref|YP_004338762.1| - 0.066 14.1 7.8 1.1 10.2 0.4 3.1 4 0 0 4 4 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|327311865|ref|YP_004338762.1| - 0.29 10.9 4.7 6.3 6.6 0.2 2.5 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF373 PF04123.13 gi|327311865|ref|YP_004338762.1| - 7.1 6.0 9.9 14 5.0 9.9 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Glyco_tranf_2_3 PF13641.6 gi|327311866|ref|YP_004338763.1| - 3.9e-16 59.6 0.0 7.8e-16 58.7 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|327311866|ref|YP_004338763.1| - 4.8e-13 49.5 3.7 7.6e-13 48.8 3.7 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|327311866|ref|YP_004338763.1| - 1.6e-06 28.1 0.0 6.1e-06 26.2 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|327311866|ref|YP_004338763.1| - 0.00014 21.4 0.0 0.00023 20.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 gi|327311866|ref|YP_004338763.1| - 0.12 10.8 0.1 0.27 9.7 0.3 1.4 2 0 0 2 2 2 0 Cellulose synthase Inos-1-P_synth PF01658.17 gi|327311867|ref|YP_004338764.1| - 3.3e-24 85.2 0.0 9.8e-24 83.7 0.0 1.7 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase DUF3659 PF12396.8 gi|327311867|ref|YP_004338764.1| - 0.087 12.8 0.9 0.18 11.7 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3659) PadR PF03551.14 gi|327311868|ref|YP_004338765.1| - 1.9e-08 34.2 0.1 2.6e-08 33.7 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Hydrolase_6 PF13344.6 gi|327311868|ref|YP_004338765.1| - 0.074 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Peptidase_M48 PF01435.18 gi|327311869|ref|YP_004338766.1| - 3.5e-38 131.4 0.0 6.3e-38 130.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 MFS_2 PF13347.6 gi|327311869|ref|YP_004338766.1| - 0.025 13.2 11.7 0.0076 14.8 8.2 1.8 2 0 0 2 2 2 0 MFS/sugar transport protein DUF21 PF01595.20 gi|327311869|ref|YP_004338766.1| - 0.77 9.4 12.8 2.1 8.0 12.8 1.7 1 0 0 1 1 1 0 Cyclin M transmembrane N-terminal domain PEP-CTERM PF07589.11 gi|327311869|ref|YP_004338766.1| - 7.7 6.8 7.2 1.5 9.0 1.9 2.6 2 0 0 2 2 2 0 PEP-CTERM motif AdoMet_dc PF02675.15 gi|327311871|ref|YP_004338768.1| - 4.5e-36 123.3 0.0 5e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|327311871|ref|YP_004338768.1| - 0.058 13.2 0.0 0.091 12.6 0.0 1.2 1 0 0 1 1 1 0 Stage VI sporulation protein F tRNA-Thr_ED PF08915.11 gi|327311872|ref|YP_004338769.1| - 1.9e-43 147.8 0.0 3.7e-43 146.9 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|327311872|ref|YP_004338769.1| - 2.2e-22 79.0 1.0 5.1e-22 77.8 1.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|327311872|ref|YP_004338769.1| - 7.1e-18 65.2 0.2 1.5e-17 64.2 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Sm_multidrug_ex PF06695.11 gi|327311873|ref|YP_004338770.1| - 0.012 16.2 0.2 0.012 16.2 0.2 1.1 1 0 0 1 1 1 0 Putative small multi-drug export protein DUF2204 PF09970.9 gi|327311874|ref|YP_004338771.1| - 2.1e-52 177.4 4.0 2.4e-52 177.2 4.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) RNA_binding PF01877.17 gi|327311874|ref|YP_004338771.1| - 0.0049 17.1 0.5 0.0072 16.6 0.5 1.3 1 0 0 1 1 1 1 RNA binding Imm70 PF15601.6 gi|327311874|ref|YP_004338771.1| - 0.024 14.2 0.2 0.038 13.5 0.2 1.3 1 0 0 1 1 1 0 Immunity protein 70 PGK PF00162.19 gi|327311875|ref|YP_004338772.1| - 5.1e-90 302.1 0.0 5.9e-90 301.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|327311876|ref|YP_004338773.1| - 5.5e-13 48.8 0.0 7.4e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|327311876|ref|YP_004338773.1| - 2.2e-11 43.9 0.2 4.7e-11 42.9 0.2 1.7 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|327311876|ref|YP_004338773.1| - 0.00043 20.6 0.1 0.0022 18.3 0.0 2.2 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|327311876|ref|YP_004338773.1| - 0.0013 18.2 0.1 0.072 12.5 0.1 2.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|327311876|ref|YP_004338773.1| - 0.0018 19.1 0.3 0.0053 17.6 0.0 2.0 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|327311876|ref|YP_004338773.1| - 0.0039 17.4 0.0 0.0092 16.2 0.0 1.6 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PglD_N PF17836.1 gi|327311876|ref|YP_004338773.1| - 0.0097 16.5 0.1 0.14 12.8 0.0 2.4 2 1 0 2 2 2 1 PglD N-terminal domain NAD_binding_3 PF03447.16 gi|327311876|ref|YP_004338773.1| - 0.01 16.5 0.4 0.075 13.7 0.1 2.4 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|327311876|ref|YP_004338773.1| - 0.02 15.3 0.0 0.055 13.9 0.0 1.8 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|327311876|ref|YP_004338773.1| - 0.079 13.2 0.1 0.33 11.2 0.1 2.1 2 1 0 2 2 2 0 TrkA-N domain F420_oxidored PF03807.17 gi|327311876|ref|YP_004338773.1| - 0.11 13.1 0.3 3.8 8.2 0.1 3.1 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|327311876|ref|YP_004338773.1| - 0.13 12.1 0.6 0.48 10.3 0.6 2.0 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Usp PF00582.26 gi|327311877|ref|YP_004338774.1| - 1.7e-16 61.0 0.1 6.1e-15 56.0 0.1 2.0 1 1 0 1 1 1 1 Universal stress protein family SRP54 PF00448.22 gi|327311877|ref|YP_004338774.1| - 0.054 13.1 0.0 0.083 12.5 0.0 1.3 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Get5_C PF18514.1 gi|327311877|ref|YP_004338774.1| - 0.14 11.9 0.3 6.9 6.5 0.1 2.9 2 1 1 3 3 3 0 Get5 C-terminal domain Glyco_hydro_1 PF00232.18 gi|327311878|ref|YP_004338775.1| - 3e-26 91.9 0.3 4.1e-25 88.1 0.2 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase family 1 Glyco_hydro_42 PF02449.15 gi|327311878|ref|YP_004338775.1| - 5.5e-08 32.5 0.1 9.7e-08 31.7 0.1 1.3 1 0 0 1 1 1 1 Beta-galactosidase Cellulase PF00150.18 gi|327311878|ref|YP_004338775.1| - 2e-06 27.5 0.1 2e-05 24.2 0.1 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_35 PF01301.19 gi|327311878|ref|YP_004338775.1| - 0.0011 18.7 0.1 0.0028 17.3 0.2 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 35 ERCC4 PF02732.15 gi|327311879|ref|YP_004338776.1| - 7.7e-18 65.2 0.0 1.3e-17 64.5 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.23 gi|327311879|ref|YP_004338776.1| - 0.0043 16.9 0.3 0.012 15.4 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|327311879|ref|YP_004338776.1| - 0.005 17.4 0.0 0.011 16.4 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|327311879|ref|YP_004338776.1| - 0.0073 16.9 0.0 0.013 16.1 0.0 1.4 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|327311879|ref|YP_004338776.1| - 0.012 15.9 0.0 0.033 14.5 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif TPP_enzyme_M PF00205.22 gi|327311879|ref|YP_004338776.1| - 0.1 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain Ribosomal_S17 PF00366.20 gi|327311880|ref|YP_004338777.1| - 1.4e-21 76.3 1.9 3.4e-21 75.1 2.0 1.5 2 0 0 2 2 2 1 Ribosomal protein S17 Ribosomal_S19 PF00203.21 gi|327311881|ref|YP_004338778.1| - 5.8e-32 109.4 0.0 7.3e-32 109.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S19 CYTH PF01928.21 gi|327311882|ref|YP_004338779.1| - 0.028 14.3 0.3 0.031 14.2 0.3 1.1 1 0 0 1 1 1 0 CYTH domain SH3_16 PF18348.1 gi|327311882|ref|YP_004338779.1| - 0.063 13.1 0.3 0.21 11.4 0.1 1.8 2 0 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain tRNA_synthFbeta PF17759.1 gi|327311883|ref|YP_004338780.1| - 3.2e-24 85.6 0.0 6.4e-24 84.6 0.0 1.5 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|327311883|ref|YP_004338780.1| - 2.9e-09 37.1 0.5 3e-06 27.4 0.4 3.6 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|327311883|ref|YP_004338780.1| - 2.5e-08 33.8 0.0 4.1e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain Myosin_N PF02736.19 gi|327311883|ref|YP_004338780.1| - 0.12 12.3 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain PhetRS_B1 PF18262.1 gi|327311883|ref|YP_004338780.1| - 0.17 12.1 0.0 1.8 8.8 0.0 2.5 3 0 0 3 3 3 0 Phe-tRNA synthetase beta subunit B1 domain PC4 PF02229.16 gi|327311883|ref|YP_004338780.1| - 0.35 10.6 2.1 0.68 9.6 0.2 2.2 2 0 0 2 2 2 0 Transcriptional Coactivator p15 (PC4) Methyltrans_RNA PF04452.14 gi|327311884|ref|YP_004338781.1| - 0.032 13.6 0.0 0.039 13.3 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase PhnA_Zn_Ribbon PF08274.12 gi|327311885|ref|YP_004338782.1| - 0.00016 21.6 0.4 0.00026 20.9 0.4 1.3 1 0 0 1 1 1 1 PhnA Zinc-Ribbon Lar_restr_allev PF14354.6 gi|327311885|ref|YP_004338782.1| - 0.0022 18.3 0.1 0.0028 18.0 0.1 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-C4_Topoisom PF01396.19 gi|327311885|ref|YP_004338782.1| - 0.0025 17.5 0.3 0.0037 17.0 0.3 1.3 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|327311885|ref|YP_004338782.1| - 0.0069 15.9 0.2 0.011 15.2 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|327311885|ref|YP_004338782.1| - 0.014 14.8 5.5 0.14 11.6 0.5 1.9 2 1 1 3 3 3 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|327311885|ref|YP_004338782.1| - 0.029 13.7 0.5 0.044 13.1 0.5 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|327311885|ref|YP_004338782.1| - 0.077 13.0 0.6 0.21 11.6 0.6 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF983 PF06170.12 gi|327311885|ref|YP_004338782.1| - 0.11 12.9 0.6 0.17 12.3 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-CSL PF05207.13 gi|327311885|ref|YP_004338782.1| - 0.17 11.6 1.2 0.46 10.3 1.2 1.7 1 1 0 1 1 1 0 CSL zinc finger DUF1818 PF08848.11 gi|327311886|ref|YP_004338783.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1818) Archease PF01951.16 gi|327311887|ref|YP_004338784.1| - 8.8e-37 126.4 0.1 9.8e-37 126.3 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) OMPdecase PF00215.24 gi|327311888|ref|YP_004338785.1| - 4.6e-19 68.9 4.8 1.4e-18 67.4 4.8 1.8 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|327311888|ref|YP_004338785.1| - 0.00015 21.3 0.5 0.00029 20.3 0.5 1.6 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family QRPTase_C PF01729.19 gi|327311888|ref|YP_004338785.1| - 0.0011 18.8 0.2 0.0021 17.8 0.1 1.5 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain ADH_zinc_N PF00107.26 gi|327311888|ref|YP_004338785.1| - 0.059 13.4 0.8 0.18 11.8 0.8 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase AAA_17 PF13207.6 gi|327311889|ref|YP_004338786.1| - 3.4e-30 105.2 0.1 4.2e-30 105.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|327311889|ref|YP_004338786.1| - 8.2e-05 23.2 0.0 0.00015 22.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|327311889|ref|YP_004338786.1| - 0.00025 20.8 0.2 0.098 12.3 0.0 2.3 2 1 0 2 2 2 2 Thymidylate kinase Zeta_toxin PF06414.12 gi|327311889|ref|YP_004338786.1| - 0.019 14.3 0.0 0.038 13.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.6 gi|327311889|ref|YP_004338786.1| - 0.028 14.6 0.0 0.073 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|327311889|ref|YP_004338786.1| - 0.19 11.4 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain DJ-1_PfpI PF01965.24 gi|327311890|ref|YP_004338787.1| - 8.4e-07 28.9 0.1 1.2e-05 25.2 0.1 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family SGS PF05002.15 gi|327311890|ref|YP_004338787.1| - 0.052 13.7 0.0 1.9 8.6 0.0 2.3 2 0 0 2 2 2 0 SGS domain Fe-ADH_2 PF13685.6 gi|327311891|ref|YP_004338788.1| - 8.1e-55 186.2 0.0 3.3e-54 184.2 0.0 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|327311891|ref|YP_004338788.1| - 1.4e-25 89.9 1.9 8.3e-23 80.8 1.9 3.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|327311891|ref|YP_004338788.1| - 4e-07 29.5 0.1 0.00019 20.7 0.0 3.1 2 1 0 2 2 2 1 3-dehydroquinate synthase Malic_M PF03949.15 gi|327311894|ref|YP_004338791.1| - 1.4e-25 90.0 0.1 2.3e-24 86.0 0.1 2.1 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|327311894|ref|YP_004338791.1| - 6.4e-24 84.7 0.2 7.5e-15 55.2 0.1 2.5 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Shikimate_DH PF01488.20 gi|327311894|ref|YP_004338791.1| - 0.018 15.1 0.0 9.1 6.3 0.1 2.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ThiF PF00899.21 gi|327311894|ref|YP_004338791.1| - 0.023 14.1 0.2 0.059 12.7 0.2 1.7 1 0 0 1 1 1 0 ThiF family Nop16 PF09420.10 gi|327311895|ref|YP_004338792.1| - 0.0076 16.3 0.0 0.008 16.2 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein Nop16 TonB_2 PF13103.6 gi|327311895|ref|YP_004338792.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 TonB C terminal Citrate_synt PF00285.21 gi|327311896|ref|YP_004338793.1| - 3.9e-127 424.3 0.0 4.4e-127 424.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain DUF4443 PF14544.6 gi|327311897|ref|YP_004338794.1| - 7.6e-05 22.9 0.0 0.0001 22.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) TIP49 PF06068.13 gi|327311898|ref|YP_004338795.1| - 1.3e-132 442.3 0.1 1.6e-132 442.0 0.1 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|327311898|ref|YP_004338795.1| - 3.8e-21 75.0 2.0 5.1e-21 74.6 0.2 2.3 3 0 0 3 3 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|327311898|ref|YP_004338795.1| - 5.7e-10 39.7 1.0 7.6e-07 29.6 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|327311898|ref|YP_004338795.1| - 1.3e-08 34.8 0.3 3.1e-06 27.0 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|327311898|ref|YP_004338795.1| - 4.3e-08 33.7 1.3 2.9e-07 31.0 0.4 2.4 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|327311898|ref|YP_004338795.1| - 2.4e-06 27.9 0.4 0.094 13.0 0.0 2.7 3 1 0 3 3 2 2 AAA domain AAA_25 PF13481.6 gi|327311898|ref|YP_004338795.1| - 7.8e-05 22.3 0.0 0.00019 21.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|327311898|ref|YP_004338795.1| - 0.00011 22.5 0.0 0.0054 17.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain DnaB_C PF03796.15 gi|327311898|ref|YP_004338795.1| - 0.00029 20.3 0.0 0.00079 18.8 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Sigma54_activat PF00158.26 gi|327311898|ref|YP_004338795.1| - 0.00035 20.3 0.2 0.0055 16.4 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|327311898|ref|YP_004338795.1| - 0.0014 18.4 0.0 0.0029 17.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|327311898|ref|YP_004338795.1| - 0.0025 17.2 0.4 0.0053 16.2 0.1 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|327311898|ref|YP_004338795.1| - 0.004 17.1 0.1 0.013 15.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|327311898|ref|YP_004338795.1| - 0.0043 17.5 0.0 0.031 14.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|327311898|ref|YP_004338795.1| - 0.0064 16.0 0.1 0.015 14.8 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region NACHT PF05729.12 gi|327311898|ref|YP_004338795.1| - 0.0079 16.1 0.0 0.019 14.9 0.0 1.6 2 0 0 2 2 1 1 NACHT domain AAA_33 PF13671.6 gi|327311898|ref|YP_004338795.1| - 0.013 15.6 0.0 0.032 14.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|327311898|ref|YP_004338795.1| - 0.023 14.5 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|327311898|ref|YP_004338795.1| - 0.037 13.5 0.1 0.075 12.5 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.6 gi|327311898|ref|YP_004338795.1| - 0.043 14.4 0.1 0.16 12.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|327311898|ref|YP_004338795.1| - 0.044 13.5 0.8 0.13 11.9 0.1 2.1 2 1 0 2 2 2 0 AAA domain DUF4158 PF13700.6 gi|327311898|ref|YP_004338795.1| - 0.046 13.6 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4158) DUF2075 PF09848.9 gi|327311898|ref|YP_004338795.1| - 0.049 12.9 0.0 0.088 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|327311898|ref|YP_004338795.1| - 0.054 13.9 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.15 gi|327311898|ref|YP_004338795.1| - 0.06 13.3 0.1 0.16 12.0 0.0 1.9 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|327311898|ref|YP_004338795.1| - 0.062 13.8 0.0 0.14 12.7 0.0 1.8 1 1 0 1 1 1 0 ABC transporter AAA_19 PF13245.6 gi|327311898|ref|YP_004338795.1| - 0.068 13.5 1.0 0.17 12.2 1.0 1.9 1 1 0 1 1 1 0 AAA domain TFX_C PF14601.6 gi|327311898|ref|YP_004338795.1| - 0.088 12.8 0.3 0.27 11.2 0.1 1.9 2 0 0 2 2 1 0 DNA_binding protein, TFX, C-term Zeta_toxin PF06414.12 gi|327311898|ref|YP_004338795.1| - 0.11 11.8 0.3 0.28 10.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin DUF2628 PF10947.8 gi|327311899|ref|YP_004338796.1| - 0.7 10.3 6.3 1.1 9.7 4.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) MHYT PF03707.16 gi|327311899|ref|YP_004338796.1| - 1.6 9.0 7.7 6.4 7.0 0.3 3.0 3 0 0 3 3 3 0 Bacterial signalling protein N terminal repeat Peptidase_M50 PF02163.22 gi|327311900|ref|YP_004338797.1| - 4.8e-15 55.5 18.8 1.9e-14 53.6 18.8 1.9 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|327311900|ref|YP_004338797.1| - 5.1e-11 42.7 0.2 0.00021 21.6 0.0 3.3 2 2 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|327311900|ref|YP_004338797.1| - 6.8e-06 25.8 2.0 0.081 12.8 0.1 2.9 3 0 0 3 3 3 2 PDZ domain PDZ PF00595.24 gi|327311900|ref|YP_004338797.1| - 0.0011 19.3 0.2 1.6 9.1 0.1 3.4 4 0 0 4 4 4 2 PDZ domain Tricorn_PDZ PF14685.6 gi|327311900|ref|YP_004338797.1| - 0.015 15.2 0.5 6.4 6.8 0.1 2.5 2 0 0 2 2 2 0 Tricorn protease PDZ domain DUF2208 PF09973.9 gi|327311902|ref|YP_004338799.1| - 8.3e-58 195.7 5.0 9.4e-58 195.6 5.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF2207 PF09972.9 gi|327311902|ref|YP_004338799.1| - 2.1 7.0 12.5 2.4 6.8 5.9 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) Ribosomal_60s PF00428.19 gi|327311903|ref|YP_004338800.1| - 5.4e-18 65.4 14.1 6.3e-18 65.2 14.1 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|327311903|ref|YP_004338800.1| - 0.015 15.7 0.3 0.021 15.1 0.0 1.4 2 0 0 2 2 2 0 EF-hand domain Cytomega_UL84 PF06284.11 gi|327311903|ref|YP_004338800.1| - 0.28 9.6 1.5 0.28 9.6 1.5 1.1 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein Ribosomal_L38e PF01781.18 gi|327311904|ref|YP_004338801.1| - 0.0016 18.5 0.1 0.0019 18.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal L38e protein family Cob_adeno_trans PF01923.18 gi|327311905|ref|YP_004338802.1| - 4e-15 56.4 0.0 5.2e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase HTH_IclR PF09339.10 gi|327311906|ref|YP_004338803.1| - 5.1e-10 39.0 1.4 1.2e-09 37.8 1.4 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|327311906|ref|YP_004338803.1| - 5.3e-08 32.3 0.0 1.2e-07 31.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|327311906|ref|YP_004338803.1| - 5.2e-07 29.6 0.4 1e-06 28.7 0.4 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|327311906|ref|YP_004338803.1| - 6.6e-06 25.9 0.1 1.5e-05 24.7 0.1 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|327311906|ref|YP_004338803.1| - 1.7e-05 24.6 0.2 3.4e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|327311906|ref|YP_004338803.1| - 0.00012 22.1 0.0 0.00025 21.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|327311906|ref|YP_004338803.1| - 0.00042 20.0 0.5 0.002 17.9 0.1 2.0 2 0 0 2 2 2 1 LexA DNA binding domain HTH_27 PF13463.6 gi|327311906|ref|YP_004338803.1| - 0.00042 20.7 0.1 0.00069 20.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|327311906|ref|YP_004338803.1| - 0.0028 17.6 0.0 0.0059 16.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_8 PF02954.19 gi|327311906|ref|YP_004338803.1| - 0.0054 16.5 0.2 0.013 15.2 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.6 gi|327311906|ref|YP_004338803.1| - 0.0056 16.6 0.2 0.0097 15.9 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain CENP-B_N PF04218.13 gi|327311906|ref|YP_004338803.1| - 0.008 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_5 PF01022.20 gi|327311906|ref|YP_004338803.1| - 0.0085 15.9 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|327311906|ref|YP_004338803.1| - 0.013 15.9 0.0 0.031 14.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|327311906|ref|YP_004338803.1| - 0.065 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.12 gi|327311906|ref|YP_004338803.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HAD_2 PF13419.6 gi|327311907|ref|YP_004338804.1| - 3.6e-07 30.4 0.0 6.7e-06 26.3 0.0 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|327311907|ref|YP_004338804.1| - 0.00022 21.7 0.0 0.00039 20.9 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|327311907|ref|YP_004338804.1| - 0.00061 20.1 0.0 0.0037 17.6 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|327311907|ref|YP_004338804.1| - 0.003 17.6 0.0 0.0054 16.8 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|327311907|ref|YP_004338804.1| - 0.076 13.1 0.1 0.28 11.3 0.1 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UbiA PF01040.18 gi|327311908|ref|YP_004338805.1| - 3.6e-26 92.0 27.4 5.2e-26 91.5 27.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3285 PF11688.8 gi|327311908|ref|YP_004338805.1| - 3.8 7.5 7.5 2.9 7.9 0.5 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3285) Ribosomal_L22 PF00237.19 gi|327311909|ref|YP_004338806.1| - 3.1e-24 85.2 0.0 4.2e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e FHIPEP PF00771.20 gi|327311910|ref|YP_004338807.1| - 0.028 12.9 0.0 0.028 12.9 0.0 1.0 1 0 0 1 1 1 0 FHIPEP family IcmF-related PF06761.12 gi|327311910|ref|YP_004338807.1| - 0.048 13.1 0.3 0.087 12.3 0.2 1.5 1 1 0 1 1 1 0 Intracellular multiplication and human macrophage-killing RPN13_C PF16550.5 gi|327311910|ref|YP_004338807.1| - 0.24 11.6 1.0 22 5.3 0.2 2.2 1 1 1 2 2 2 0 UCH-binding domain AsnC_trans_reg2 PF17805.1 gi|327311911|ref|YP_004338808.1| - 4.7e-33 113.2 0.2 7.2e-20 70.9 0.0 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|327311911|ref|YP_004338808.1| - 1.1e-06 28.3 0.2 8.7e-06 25.5 0.1 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|327311911|ref|YP_004338808.1| - 0.0035 16.9 0.0 2.7 7.6 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 gi|327311911|ref|YP_004338808.1| - 0.11 11.9 0.0 0.32 10.4 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 PEP_mutase PF13714.6 gi|327311912|ref|YP_004338809.1| - 7.7e-59 199.0 0.7 9.3e-59 198.8 0.7 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|327311912|ref|YP_004338809.1| - 1.1e-13 50.5 0.1 1.5e-13 50.1 0.1 1.2 1 0 0 1 1 1 1 Isocitrate lyase family Pantoate_transf PF02548.15 gi|327311912|ref|YP_004338809.1| - 0.0066 15.9 0.4 0.022 14.1 0.1 1.9 1 1 1 2 2 2 1 Ketopantoate hydroxymethyltransferase MmgE_PrpD PF03972.14 gi|327311913|ref|YP_004338810.1| - 5.5e-139 463.5 0.2 6.2e-139 463.3 0.2 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Iso_dh PF00180.20 gi|327311914|ref|YP_004338811.1| - 1.7e-97 326.7 0.0 2e-97 326.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase GerD PF17898.1 gi|327311914|ref|YP_004338811.1| - 0.16 12.0 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Spore germination GerD central core domain Acetyltransf_1 PF00583.25 gi|327311915|ref|YP_004338812.1| - 2.1e-15 57.0 0.0 2.5e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|327311915|ref|YP_004338812.1| - 7.5e-13 48.7 0.0 2.3e-12 47.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|327311915|ref|YP_004338812.1| - 2.8e-11 43.4 0.0 3.9e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|327311915|ref|YP_004338812.1| - 5.4e-10 39.1 0.0 8.5e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|327311915|ref|YP_004338812.1| - 1.2e-06 28.7 0.0 1.6e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|327311915|ref|YP_004338812.1| - 0.00014 21.6 0.0 0.00049 19.8 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|327311915|ref|YP_004338812.1| - 0.00059 19.9 0.1 0.0018 18.3 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|327311915|ref|YP_004338812.1| - 0.0012 18.9 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|327311915|ref|YP_004338812.1| - 0.0047 17.6 0.0 0.0053 17.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|327311915|ref|YP_004338812.1| - 0.03 14.0 0.0 0.044 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) Acetyltransf_6 PF13480.7 gi|327311915|ref|YP_004338812.1| - 0.038 14.1 0.0 0.07 13.3 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_16 PF05301.11 gi|327311915|ref|YP_004338812.1| - 0.038 13.7 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 GNAT acetyltransferase, Mec-17 Acetyltransf_15 PF17013.5 gi|327311915|ref|YP_004338812.1| - 0.049 13.1 0.1 0.22 10.9 0.1 1.8 1 1 0 1 1 1 0 Putative acetyl-transferase Gly_acyl_tr_C PF08444.10 gi|327311915|ref|YP_004338812.1| - 0.21 11.9 0.0 0.31 11.3 0.0 1.2 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region NMD3 PF04981.13 gi|327311916|ref|YP_004338813.1| - 6.3e-28 97.9 0.0 9.1e-28 97.3 0.0 1.2 1 0 0 1 1 1 1 NMD3 family zf-ribbon_3 PF13248.6 gi|327311916|ref|YP_004338813.1| - 0.016 14.6 1.2 2.8 7.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHCC PF10276.9 gi|327311916|ref|YP_004338813.1| - 0.039 14.0 1.2 0.16 12.1 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger domain Lar_restr_allev PF14354.6 gi|327311916|ref|YP_004338813.1| - 0.12 12.8 0.7 0.29 11.5 0.7 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-BED PF02892.15 gi|327311916|ref|YP_004338813.1| - 0.32 11.0 1.3 1 9.4 0.2 2.3 2 0 0 2 2 2 0 BED zinc finger Zn-ribbon_8 PF09723.10 gi|327311916|ref|YP_004338813.1| - 3.5 7.8 6.6 1.2 9.3 0.2 2.6 3 0 0 3 3 3 0 Zinc ribbon domain Sgf11 PF08209.11 gi|327311916|ref|YP_004338813.1| - 4.8 6.8 5.4 14 5.4 0.0 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-C2HC_2 PF13913.6 gi|327311916|ref|YP_004338813.1| - 5.2 7.1 10.2 0.5 10.3 0.8 2.9 2 1 0 2 2 2 0 zinc-finger of a C2HC-type zf-RING_7 PF02591.15 gi|327311916|ref|YP_004338813.1| - 7.2 6.9 6.5 43 4.4 1.2 3.2 2 1 0 2 2 2 0 C4-type zinc ribbon domain DNA_methylase PF00145.17 gi|327311917|ref|YP_004338814.1| - 9.5e-48 163.2 0.0 1.8e-31 109.7 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|327311917|ref|YP_004338814.1| - 0.014 15.0 0.0 0.031 13.9 0.0 1.6 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|327311917|ref|YP_004338814.1| - 0.17 12.6 0.0 0.34 11.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain PA14 PF07691.12 gi|327311918|ref|YP_004338815.1| - 0.014 15.2 0.1 0.021 14.6 0.1 1.3 1 0 0 1 1 1 0 PA14 domain PDDEXK_1 PF12705.7 gi|327311918|ref|YP_004338815.1| - 0.025 14.5 0.9 0.048 13.6 0.9 1.5 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily MAP PF03642.13 gi|327311918|ref|YP_004338815.1| - 0.055 13.8 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 MAP domain DUF3222 PF11519.8 gi|327311918|ref|YP_004338815.1| - 0.09 13.0 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3222) Pyr_redox_2 PF07992.14 gi|327311919|ref|YP_004338816.1| - 9.6e-30 103.8 1.9 1.5e-29 103.2 1.9 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|327311919|ref|YP_004338816.1| - 2.2e-13 50.2 1.9 9.9e-10 38.2 0.1 2.9 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|327311919|ref|YP_004338816.1| - 3.7e-09 36.6 3.4 2.5e-05 24.0 0.7 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|327311919|ref|YP_004338816.1| - 5e-07 29.1 6.1 9.3e-06 25.0 1.0 3.0 2 1 1 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|327311919|ref|YP_004338816.1| - 2e-06 27.4 0.5 2e-06 27.4 0.5 2.4 3 0 0 3 3 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|327311919|ref|YP_004338816.1| - 3e-06 26.6 1.8 3e-06 26.6 1.8 3.4 2 2 2 4 4 4 1 FAD binding domain HI0933_like PF03486.14 gi|327311919|ref|YP_004338816.1| - 0.00028 19.7 0.9 0.0067 15.2 0.7 2.3 1 1 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|327311919|ref|YP_004338816.1| - 0.0003 21.3 2.1 0.068 13.7 1.0 2.9 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|327311919|ref|YP_004338816.1| - 0.00057 20.1 0.2 0.0013 18.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|327311919|ref|YP_004338816.1| - 0.00068 18.9 2.3 0.00073 18.8 0.3 1.9 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|327311919|ref|YP_004338816.1| - 0.031 13.4 0.2 0.46 9.6 0.0 2.4 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|327311919|ref|YP_004338816.1| - 0.032 14.2 1.4 0.48 10.4 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|327311919|ref|YP_004338816.1| - 0.11 11.8 0.2 0.11 11.8 0.2 1.9 3 0 0 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|327311919|ref|YP_004338816.1| - 0.28 10.0 2.1 0.18 10.7 0.3 1.6 2 0 0 2 2 2 0 Tryptophan halogenase TGS PF02824.21 gi|327311920|ref|YP_004338817.1| - 3.7e-16 58.9 0.0 1.1e-15 57.4 0.0 1.9 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|327311920|ref|YP_004338817.1| - 9.4e-12 44.9 0.0 2.3e-11 43.7 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|327311920|ref|YP_004338817.1| - 1.9e-06 27.9 0.0 3.8e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase YchF-GTPase_C PF06071.13 gi|327311920|ref|YP_004338817.1| - 0.011 15.9 0.2 2.4 8.4 0.0 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF933) CBS PF00571.28 gi|327311920|ref|YP_004338817.1| - 0.023 15.1 0.1 3.2 8.3 0.0 3.1 3 0 0 3 3 3 0 CBS domain FeoB_N PF02421.18 gi|327311920|ref|YP_004338817.1| - 0.05 13.1 0.0 0.077 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA PF00004.29 gi|327311922|ref|YP_004338819.1| - 1.3e-15 58.0 0.0 2.3e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|327311922|ref|YP_004338819.1| - 4.2e-15 55.9 0.0 1.6e-10 41.0 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|327311922|ref|YP_004338819.1| - 6.5e-12 45.7 0.0 1.7e-11 44.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain RuvB_N PF05496.12 gi|327311922|ref|YP_004338819.1| - 4.1e-09 36.4 0.0 1.1e-08 35.0 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|327311922|ref|YP_004338819.1| - 2.4e-07 31.3 0.0 0.00058 20.3 0.0 2.6 1 1 1 2 2 2 2 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|327311922|ref|YP_004338819.1| - 1.6e-06 28.4 0.2 5e-06 26.8 0.0 2.0 2 0 0 2 2 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|327311922|ref|YP_004338819.1| - 3.1e-06 27.3 0.0 5.9e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327311922|ref|YP_004338819.1| - 7.1e-06 26.3 0.2 0.12 12.6 0.0 2.5 1 1 1 2 2 2 2 AAA domain Rad17 PF03215.15 gi|327311922|ref|YP_004338819.1| - 1.2e-05 25.4 0.0 3.1e-05 24.0 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_3 PF07726.11 gi|327311922|ref|YP_004338819.1| - 2.6e-05 24.1 0.0 5.1e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|327311922|ref|YP_004338819.1| - 6.9e-05 22.3 0.0 0.0016 17.9 0.0 2.4 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|327311922|ref|YP_004338819.1| - 0.00011 21.9 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|327311922|ref|YP_004338819.1| - 0.00011 22.2 0.1 0.00047 20.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|327311922|ref|YP_004338819.1| - 0.00012 22.6 0.0 0.00088 19.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|327311922|ref|YP_004338819.1| - 0.00013 21.8 0.0 0.00025 20.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|327311922|ref|YP_004338819.1| - 0.00036 20.6 0.0 0.0041 17.2 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|327311922|ref|YP_004338819.1| - 0.00071 19.1 0.1 0.31 10.5 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_30 PF13604.6 gi|327311922|ref|YP_004338819.1| - 0.0017 18.1 0.0 0.0054 16.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|327311922|ref|YP_004338819.1| - 0.0023 17.8 0.0 0.0072 16.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|327311922|ref|YP_004338819.1| - 0.0029 17.4 0.1 0.01 15.6 0.0 1.9 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|327311922|ref|YP_004338819.1| - 0.0043 16.6 0.0 0.0082 15.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|327311922|ref|YP_004338819.1| - 0.0048 17.3 0.0 0.014 15.7 0.0 1.8 2 0 0 2 2 1 1 RNA helicase DEAD PF00270.29 gi|327311922|ref|YP_004338819.1| - 0.0069 16.2 0.2 0.12 12.1 0.0 2.2 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_33 PF13671.6 gi|327311922|ref|YP_004338819.1| - 0.008 16.3 0.0 0.018 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|327311922|ref|YP_004338819.1| - 0.0093 15.4 0.0 0.32 10.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial TniB protein TIP49 PF06068.13 gi|327311922|ref|YP_004338819.1| - 0.011 14.9 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_19 PF13245.6 gi|327311922|ref|YP_004338819.1| - 0.018 15.4 0.1 0.12 12.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|327311922|ref|YP_004338819.1| - 0.038 13.1 0.0 0.32 10.0 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|327311922|ref|YP_004338819.1| - 0.038 14.2 0.1 0.12 12.6 0.0 1.9 2 0 0 2 2 1 0 AAA domain Viral_helicase1 PF01443.18 gi|327311922|ref|YP_004338819.1| - 0.04 13.7 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DNA_pol3_delta PF06144.13 gi|327311922|ref|YP_004338819.1| - 0.042 13.6 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DUF2075 PF09848.9 gi|327311922|ref|YP_004338819.1| - 0.048 12.9 0.0 0.71 9.0 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|327311922|ref|YP_004338819.1| - 0.056 13.1 0.0 6.3 6.5 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|327311922|ref|YP_004338819.1| - 0.078 12.9 0.0 0.46 10.4 0.0 2.0 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_2 PF07724.14 gi|327311922|ref|YP_004338819.1| - 0.11 12.6 0.0 0.32 11.1 0.0 1.7 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) TsaE PF02367.17 gi|327311922|ref|YP_004338819.1| - 0.14 12.2 0.0 0.59 10.1 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|327311922|ref|YP_004338819.1| - 0.16 12.5 0.0 0.56 10.7 0.0 2.0 1 1 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|327311922|ref|YP_004338819.1| - 0.19 10.8 0.0 0.33 10.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 TFIIB PF00382.19 gi|327311923|ref|YP_004338820.1| - 5.7e-31 106.4 1.9 7.7e-16 57.9 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|327311923|ref|YP_004338820.1| - 5.2e-17 61.1 1.7 8.1e-17 60.5 1.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|327311923|ref|YP_004338820.1| - 4.4e-08 32.9 0.3 0.00021 21.0 0.3 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Cyclin_C PF02984.19 gi|327311923|ref|YP_004338820.1| - 3.7e-06 27.0 0.0 0.002 18.2 0.0 2.4 2 0 0 2 2 2 1 Cyclin, C-terminal domain TFIIB_C_1 PF18542.1 gi|327311923|ref|YP_004338820.1| - 0.0043 17.1 2.2 0.0043 17.1 2.2 1.9 2 0 0 2 2 1 1 Transcription factor IIB C-terminal module 1 A2L_zn_ribbon PF08792.10 gi|327311923|ref|YP_004338820.1| - 0.015 15.0 1.9 0.026 14.3 1.9 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_S27e PF01667.17 gi|327311923|ref|YP_004338820.1| - 0.021 14.5 1.2 0.039 13.6 1.2 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Prim_Zn_Ribbon PF08273.12 gi|327311923|ref|YP_004338820.1| - 0.027 14.7 0.5 0.059 13.7 0.5 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF2318 PF10080.9 gi|327311923|ref|YP_004338820.1| - 0.039 14.1 0.2 0.091 12.9 0.2 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) baeRF_family2 PF18844.1 gi|327311923|ref|YP_004338820.1| - 0.042 13.9 0.1 0.12 12.4 0.1 1.8 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 HTH_Tnp_ISL3 PF13542.6 gi|327311923|ref|YP_004338820.1| - 0.082 12.3 1.7 1.8 8.0 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 zf-RRN7 PF11781.8 gi|327311923|ref|YP_004338820.1| - 0.15 11.8 2.4 0.3 10.8 2.4 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RB_B PF01857.20 gi|327311923|ref|YP_004338820.1| - 0.15 12.1 0.1 0.23 11.5 0.1 1.4 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zf-RING_9 PF13901.6 gi|327311923|ref|YP_004338820.1| - 0.17 11.8 0.6 0.37 10.8 0.1 1.7 2 0 0 2 2 2 0 Putative zinc-RING and/or ribbon PADR1 PF08063.12 gi|327311923|ref|YP_004338820.1| - 0.24 11.2 1.0 0.54 10.1 1.0 1.5 1 0 0 1 1 1 0 PADR1 (NUC008) domain Desulfoferrod_N PF06397.12 gi|327311923|ref|YP_004338820.1| - 0.25 11.0 5.0 0.57 9.8 5.0 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Auto_anti-p27 PF06677.12 gi|327311923|ref|YP_004338820.1| - 0.52 10.5 2.1 1.1 9.5 2.1 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|327311923|ref|YP_004338820.1| - 0.71 9.4 2.4 24 4.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|327311923|ref|YP_004338820.1| - 0.94 9.4 3.3 20 5.2 0.1 2.9 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-Di19 PF05605.12 gi|327311923|ref|YP_004338820.1| - 1.6 9.1 3.3 17 5.8 0.3 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Arena_nucleocap PF00843.17 gi|327311924|ref|YP_004338821.1| - 0.0017 17.4 0.0 0.0018 17.2 0.0 1.1 1 0 0 1 1 1 1 Arenavirus nucleocapsid N-terminal domain BphX PF06139.12 gi|327311926|ref|YP_004338823.1| - 0.00014 21.8 5.6 0.00017 21.5 5.6 1.3 1 0 0 1 1 1 1 BphX-like PRA1 PF03208.19 gi|327311926|ref|YP_004338823.1| - 0.16 11.6 9.2 0.23 11.1 9.3 1.4 1 1 0 1 1 1 0 PRA1 family protein Ribosomal_L13e PF01294.18 gi|327311927|ref|YP_004338824.1| - 1.5e-08 34.7 1.8 4e-08 33.3 2.1 1.8 1 1 1 2 2 2 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|327311927|ref|YP_004338824.1| - 9.3e-06 25.5 1.3 1.9e-05 24.5 1.3 1.5 1 0 0 1 1 1 1 Ribosomal L15 HTH_31 PF13560.6 gi|327311928|ref|YP_004338825.1| - 1.5e-08 34.9 0.2 3.3e-08 33.8 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|327311928|ref|YP_004338825.1| - 3.9e-07 30.0 0.0 7.9e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|327311928|ref|YP_004338825.1| - 4.7e-07 29.7 0.0 1.2e-06 28.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|327311928|ref|YP_004338825.1| - 0.034 13.9 0.0 0.086 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Hpr_kinase_N PF02603.16 gi|327311928|ref|YP_004338825.1| - 0.097 12.7 0.0 0.17 11.9 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase N terminus DUF1664 PF07889.12 gi|327311929|ref|YP_004338826.1| - 1.4e-06 28.4 26.4 0.0016 18.5 1.8 4.2 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) EzrA PF06160.12 gi|327311929|ref|YP_004338826.1| - 2e-06 26.3 41.4 1e-05 23.9 8.6 2.9 2 1 0 2 2 2 1 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.12 gi|327311929|ref|YP_004338826.1| - 1.3e-05 25.2 44.8 0.0023 18.0 1.3 5.0 2 2 2 4 4 4 2 TPR/MLP1/MLP2-like protein Baculo_PEP_C PF04513.12 gi|327311929|ref|YP_004338826.1| - 3e-05 24.1 16.5 0.073 13.1 2.2 3.9 2 2 2 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|327311929|ref|YP_004338826.1| - 3.4e-05 23.9 34.7 0.0018 18.3 7.7 3.5 2 2 2 4 4 4 2 Laminin Domain II DUF948 PF06103.11 gi|327311929|ref|YP_004338826.1| - 3.8e-05 23.9 13.3 0.019 15.2 0.1 4.4 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) DUF4201 PF13870.6 gi|327311929|ref|YP_004338826.1| - 3.8e-05 23.5 47.7 0.00032 20.5 8.1 3.9 2 2 2 4 4 4 2 Domain of unknown function (DUF4201) Spc7 PF08317.11 gi|327311929|ref|YP_004338826.1| - 4.8e-05 22.4 48.0 0.0041 16.0 9.4 3.4 1 1 1 3 3 3 3 Spc7 kinetochore protein DUF3450 PF11932.8 gi|327311929|ref|YP_004338826.1| - 7.2e-05 22.2 32.4 0.0014 18.0 16.0 3.3 2 1 1 3 3 3 2 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|327311929|ref|YP_004338826.1| - 8e-05 22.7 47.4 0.0027 17.8 18.4 4.3 1 1 3 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Sec34 PF04136.15 gi|327311929|ref|YP_004338826.1| - 0.00011 22.2 21.3 0.033 14.1 0.8 4.1 2 2 2 4 4 4 2 Sec34-like family Fez1 PF06818.15 gi|327311929|ref|YP_004338826.1| - 0.0002 21.9 37.9 0.00099 19.6 6.3 2.7 1 1 0 2 2 2 1 Fez1 Golgin_A5 PF09787.9 gi|327311929|ref|YP_004338826.1| - 0.00029 20.4 40.4 0.0052 16.3 9.3 2.2 1 1 1 2 2 2 2 Golgin subfamily A member 5 FliJ PF02050.16 gi|327311929|ref|YP_004338826.1| - 0.00032 20.9 39.8 0.054 13.7 10.8 4.6 2 2 3 5 5 5 3 Flagellar FliJ protein SKA2 PF16740.5 gi|327311929|ref|YP_004338826.1| - 0.00037 20.2 33.1 0.017 14.9 3.1 5.1 2 2 3 5 5 5 2 Spindle and kinetochore-associated protein 2 HBM PF16591.5 gi|327311929|ref|YP_004338826.1| - 0.00039 19.9 28.1 0.1 12.0 3.2 4.1 1 1 2 4 4 4 2 Helical bimodular sensor domain Mod_r PF07200.13 gi|327311929|ref|YP_004338826.1| - 0.00044 20.4 41.3 0.039 14.1 18.1 4.3 1 1 2 4 4 4 2 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.9 gi|327311929|ref|YP_004338826.1| - 0.00044 19.5 50.6 0.031 13.4 17.5 3.7 1 1 2 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 IFT57 PF10498.9 gi|327311929|ref|YP_004338826.1| - 0.00046 19.3 30.8 0.0063 15.5 14.8 3.1 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 FlaC_arch PF05377.11 gi|327311929|ref|YP_004338826.1| - 0.00046 20.5 32.0 1 9.8 4.5 6.8 3 2 5 8 8 6 1 Flagella accessory protein C (FlaC) MscS_porin PF12795.7 gi|327311929|ref|YP_004338826.1| - 0.00052 19.6 41.5 0.0011 18.6 7.9 2.7 2 1 0 2 2 2 1 Mechanosensitive ion channel porin domain GAS PF13851.6 gi|327311929|ref|YP_004338826.1| - 0.00084 18.7 47.9 0.0039 16.6 23.1 3.5 1 1 3 4 4 4 3 Growth-arrest specific micro-tubule binding Nmad5 PF18757.1 gi|327311929|ref|YP_004338826.1| - 0.00084 19.6 8.5 0.00084 19.6 8.5 3.9 1 1 3 4 4 4 1 Nucleotide modification associated domain 5 TMPIT PF07851.13 gi|327311929|ref|YP_004338826.1| - 0.00085 18.7 28.7 0.0085 15.4 10.4 3.4 2 2 2 4 4 4 3 TMPIT-like protein NPV_P10 PF05531.12 gi|327311929|ref|YP_004338826.1| - 0.00097 19.6 22.8 1.8 9.1 2.2 5.6 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|327311929|ref|YP_004338826.1| - 0.00098 19.7 34.1 0.66 10.6 7.4 4.5 2 2 1 3 3 3 2 Initiation control protein YabA KxDL PF10241.9 gi|327311929|ref|YP_004338826.1| - 0.001 19.3 30.7 0.011 16.0 0.8 5.2 3 1 3 6 6 6 1 Uncharacterized conserved protein TMF_TATA_bd PF12325.8 gi|327311929|ref|YP_004338826.1| - 0.001 19.3 39.6 0.24 11.6 13.1 4.7 2 2 1 3 3 3 1 TATA element modulatory factor 1 TATA binding Med9 PF07544.13 gi|327311929|ref|YP_004338826.1| - 0.0012 18.9 42.1 0.3 11.2 4.4 5.1 2 2 3 5 5 5 2 RNA polymerase II transcription mediator complex subunit 9 DUF2968 PF11180.8 gi|327311929|ref|YP_004338826.1| - 0.0014 18.3 6.9 0.0014 18.3 6.9 3.7 2 1 1 4 4 4 1 Protein of unknown function (DUF2968) HrpB7 PF09486.10 gi|327311929|ref|YP_004338826.1| - 0.0014 19.1 4.0 0.0014 19.1 4.0 4.4 2 2 2 4 4 4 1 Bacterial type III secretion protein (HrpB7) DUF5082 PF16888.5 gi|327311929|ref|YP_004338826.1| - 0.0015 18.8 5.9 0.0015 18.8 5.9 3.9 2 1 2 4 4 3 1 Domain of unknown function (DUF5082) ApoLp-III PF07464.11 gi|327311929|ref|YP_004338826.1| - 0.0016 18.6 24.2 0.084 13.0 3.8 3.5 2 1 1 3 3 3 1 Apolipophorin-III precursor (apoLp-III) Prominin PF05478.11 gi|327311929|ref|YP_004338826.1| - 0.0016 16.5 25.5 0.0045 15.0 3.0 3.0 2 1 1 3 3 3 2 Prominin OmpH PF03938.14 gi|327311929|ref|YP_004338826.1| - 0.0016 18.8 44.9 0.015 15.6 9.5 3.9 1 1 1 3 3 3 2 Outer membrane protein (OmpH-like) DUF3584 PF12128.8 gi|327311929|ref|YP_004338826.1| - 0.0019 15.8 40.1 0.0036 14.9 33.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3584) GldM_N PF12081.8 gi|327311929|ref|YP_004338826.1| - 0.0024 18.0 26.0 0.07 13.2 15.3 2.6 1 1 0 2 2 2 2 GldM N-terminal domain I_LWEQ PF01608.17 gi|327311929|ref|YP_004338826.1| - 0.0028 17.9 6.1 0.0028 17.9 6.1 3.1 2 1 1 3 3 3 1 I/LWEQ domain MCPsignal PF00015.21 gi|327311929|ref|YP_004338826.1| - 0.0029 17.5 12.1 0.064 13.1 2.7 2.6 2 1 0 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Seryl_tRNA_N PF02403.22 gi|327311929|ref|YP_004338826.1| - 0.0042 17.3 49.3 0.093 13.0 16.5 4.7 2 2 3 5 5 5 2 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.17 gi|327311929|ref|YP_004338826.1| - 0.0048 16.8 35.9 0.44 10.5 1.4 6.6 2 2 5 7 7 7 1 Prefoldin subunit ATG16 PF08614.11 gi|327311929|ref|YP_004338826.1| - 0.0066 16.7 43.4 0.03 14.6 4.3 4.4 1 1 3 4 4 3 1 Autophagy protein 16 (ATG16) Nup54 PF13874.6 gi|327311929|ref|YP_004338826.1| - 0.0075 16.4 10.3 0.0075 16.4 10.3 3.9 2 2 1 3 3 3 1 Nucleoporin complex subunit 54 DUF773 PF05600.12 gi|327311929|ref|YP_004338826.1| - 0.012 14.4 27.0 0.067 11.9 7.6 3.2 1 1 2 3 3 3 0 CDK5 regulatory subunit-associated protein 3 PI3K_P85_iSH2 PF16454.5 gi|327311929|ref|YP_004338826.1| - 0.013 15.1 40.8 0.039 13.6 17.0 4.3 2 2 2 4 4 4 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DinB_2 PF12867.7 gi|327311929|ref|YP_004338826.1| - 0.013 16.0 0.3 0.86 10.1 0.0 3.0 2 2 1 3 3 3 0 DinB superfamily DHR10 PF18595.1 gi|327311929|ref|YP_004338826.1| - 0.014 15.4 4.3 0.014 15.4 4.3 4.6 2 2 2 4 4 4 0 Designed helical repeat protein 10 domain DUF4763 PF15960.5 gi|327311929|ref|YP_004338826.1| - 0.016 14.5 29.0 0.18 11.1 11.6 4.0 2 2 0 3 3 3 0 Domain of unknown function (DUF4763) HSBP1 PF06825.12 gi|327311929|ref|YP_004338826.1| - 0.019 14.8 14.4 0.22 11.4 0.5 3.9 4 0 0 4 4 2 0 Heat shock factor binding protein 1 USP8_interact PF08941.10 gi|327311929|ref|YP_004338826.1| - 0.023 14.5 21.4 0.24 11.2 5.7 3.8 2 2 2 4 4 4 0 USP8 interacting HAMP_N3 PF18575.1 gi|327311929|ref|YP_004338826.1| - 0.026 14.1 1.2 0.12 11.9 0.0 2.9 4 0 0 4 4 1 0 HAMP N-terminal domain 3 COG2 PF06148.11 gi|327311929|ref|YP_004338826.1| - 0.027 14.6 29.1 4.1 7.5 4.9 5.4 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Snapin_Pallidin PF14712.6 gi|327311929|ref|YP_004338826.1| - 0.029 14.8 35.0 0.88 10.0 1.6 4.9 2 2 3 5 5 5 0 Snapin/Pallidin HMMR_N PF15905.5 gi|327311929|ref|YP_004338826.1| - 0.03 13.8 44.4 0.23 10.9 8.1 2.5 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor N-terminal Syntaxin-6_N PF09177.11 gi|327311929|ref|YP_004338826.1| - 0.036 14.6 29.3 2 9.0 7.7 4.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal TolA_bind_tri PF16331.5 gi|327311929|ref|YP_004338826.1| - 0.037 14.1 1.9 0.037 14.1 1.9 4.9 2 2 3 5 5 5 0 TolA binding protein trimerisation HAP1_N PF04849.13 gi|327311929|ref|YP_004338826.1| - 0.041 13.1 37.4 0.012 14.8 6.8 2.6 2 1 0 2 2 2 0 HAP1 N-terminal conserved region BEN PF10523.9 gi|327311929|ref|YP_004338826.1| - 0.046 14.0 0.3 0.35 11.1 0.0 2.6 2 0 0 2 2 1 0 BEN domain APG6_N PF17675.1 gi|327311929|ref|YP_004338826.1| - 0.047 14.2 56.8 0.18 12.4 12.8 5.0 1 1 3 4 4 3 0 Apg6 coiled-coil region COG5 PF10392.9 gi|327311929|ref|YP_004338826.1| - 0.048 13.8 21.6 1.2 9.3 3.9 4.7 2 2 4 6 6 6 0 Golgi transport complex subunit 5 APG17 PF04108.12 gi|327311929|ref|YP_004338826.1| - 0.062 12.4 28.1 0.016 14.3 13.6 2.9 1 1 1 2 2 2 0 Autophagy protein Apg17 DASH_Dam1 PF08653.10 gi|327311929|ref|YP_004338826.1| - 0.075 12.8 11.2 13 5.7 1.3 6.1 2 2 3 6 6 4 0 DASH complex subunit Dam1 Tup_N PF08581.10 gi|327311929|ref|YP_004338826.1| - 0.079 13.3 27.2 2.6 8.4 11.1 4.6 2 2 2 4 4 4 0 Tup N-terminal FUSC PF04632.12 gi|327311929|ref|YP_004338826.1| - 0.083 11.4 14.4 1.1 7.7 1.1 2.5 1 1 0 2 2 2 0 Fusaric acid resistance protein family Cob_adeno_trans PF01923.18 gi|327311929|ref|YP_004338826.1| - 0.087 13.0 11.6 1 9.5 3.5 2.8 2 1 1 3 3 2 0 Cobalamin adenosyltransferase AAA_13 PF13166.6 gi|327311929|ref|YP_004338826.1| - 0.09 11.4 37.2 0.013 14.2 20.9 2.5 1 1 1 2 2 2 0 AAA domain DUF4200 PF13863.6 gi|327311929|ref|YP_004338826.1| - 0.092 13.1 56.3 3 8.2 16.6 4.7 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) Mating_N PF12731.7 gi|327311929|ref|YP_004338826.1| - 0.1 12.7 1.4 1.4 9.0 0.2 3.2 2 1 1 3 3 1 0 Mating-type protein beta 1 CREPT PF16566.5 gi|327311929|ref|YP_004338826.1| - 0.12 12.6 34.7 0.23 11.6 3.3 4.9 1 1 3 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour DUF2353 PF09789.9 gi|327311929|ref|YP_004338826.1| - 0.13 11.6 38.1 0.033 13.5 21.8 2.8 1 1 2 3 3 3 0 Uncharacterized coiled-coil protein (DUF2353) Laminin_I PF06008.14 gi|327311929|ref|YP_004338826.1| - 0.15 11.8 38.3 0.036 13.8 6.4 2.5 2 1 0 2 2 2 0 Laminin Domain I His_kinase PF06580.13 gi|327311929|ref|YP_004338826.1| - 0.15 12.4 2.5 9 6.7 0.4 3.2 2 1 0 2 2 2 0 Histidine kinase Filament PF00038.21 gi|327311929|ref|YP_004338826.1| - 0.16 11.5 46.8 0.22 11.1 8.3 3.7 2 2 1 3 3 3 0 Intermediate filament protein DUF16 PF01519.16 gi|327311929|ref|YP_004338826.1| - 0.18 12.3 31.1 0.7 10.4 2.9 4.3 1 1 3 4 4 4 0 Protein of unknown function DUF16 DUF4795 PF16043.5 gi|327311929|ref|YP_004338826.1| - 0.19 11.3 38.7 5.6 6.5 23.1 3.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) DUF148 PF02520.17 gi|327311929|ref|YP_004338826.1| - 0.21 11.7 25.1 0.15 12.2 2.1 4.3 2 2 3 5 5 5 0 Domain of unknown function DUF148 DUF812 PF05667.11 gi|327311929|ref|YP_004338826.1| - 0.23 10.3 44.2 1.6 7.5 11.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF812) COG6 PF06419.11 gi|327311929|ref|YP_004338826.1| - 0.24 9.6 24.0 0.39 8.9 2.0 3.1 2 2 1 3 3 3 0 Conserved oligomeric complex COG6 DUF724 PF05266.14 gi|327311929|ref|YP_004338826.1| - 0.28 11.0 43.5 1.1 9.1 9.1 3.7 1 1 1 3 3 3 0 Protein of unknown function (DUF724) Med3 PF11593.8 gi|327311929|ref|YP_004338826.1| - 0.28 10.3 12.6 0.086 12.0 1.5 2.2 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal FH2 PF02181.23 gi|327311929|ref|YP_004338826.1| - 0.29 10.2 26.4 0.56 9.3 0.4 3.6 1 1 3 4 4 4 0 Formin Homology 2 Domain TACC_C PF05010.14 gi|327311929|ref|YP_004338826.1| - 0.3 10.9 38.3 0.68 9.7 4.9 3.2 1 1 2 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal HemX PF04375.14 gi|327311929|ref|YP_004338826.1| - 0.3 10.3 29.8 0.86 8.8 0.5 4.0 2 2 2 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase Allexi_40kDa PF05549.11 gi|327311929|ref|YP_004338826.1| - 0.3 10.6 20.3 0.13 11.8 0.8 3.5 1 1 2 4 4 4 0 Allexivirus 40kDa protein Exonuc_VII_L PF02601.15 gi|327311929|ref|YP_004338826.1| - 0.32 10.5 32.5 1.8e+04 -8.1 32.5 2.2 1 1 0 1 1 0 0 Exonuclease VII, large subunit Myb_DNA-bind_5 PF13873.6 gi|327311929|ref|YP_004338826.1| - 0.34 11.0 0.1 0.34 11.0 0.1 4.4 4 1 1 5 5 3 0 Myb/SANT-like DNA-binding domain Serine_rich PF08824.10 gi|327311929|ref|YP_004338826.1| - 0.37 10.8 14.8 3.9 7.5 4.2 3.5 2 1 1 3 3 3 0 Serine rich protein interaction domain Phage_GP20 PF06810.11 gi|327311929|ref|YP_004338826.1| - 0.37 10.6 34.3 1.8 8.4 0.4 4.6 1 1 3 4 4 4 0 Phage minor structural protein GP20 DUF4407 PF14362.6 gi|327311929|ref|YP_004338826.1| - 0.42 9.9 32.0 0.74 9.1 6.0 3.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) Vps51 PF08700.11 gi|327311929|ref|YP_004338826.1| - 0.42 10.7 28.0 17 5.6 0.5 6.5 2 2 2 5 5 5 0 Vps51/Vps67 FapA PF03961.13 gi|327311929|ref|YP_004338826.1| - 0.44 9.1 45.1 0.14 10.7 8.4 3.4 1 1 1 3 3 3 0 Flagellar Assembly Protein A ArAE_2 PF10334.9 gi|327311929|ref|YP_004338826.1| - 0.46 10.3 5.5 1 9.2 1.2 3.1 2 2 1 3 3 3 0 Aromatic acid exporter family member 2 Tektin PF03148.14 gi|327311929|ref|YP_004338826.1| - 0.49 9.1 40.3 0.15 10.8 6.8 4.4 2 2 2 4 4 4 0 Tektin family WXG100 PF06013.12 gi|327311929|ref|YP_004338826.1| - 0.5 10.6 18.9 12 6.2 0.1 6.2 3 2 3 6 6 5 0 Proteins of 100 residues with WXG PspA_IM30 PF04012.12 gi|327311929|ref|YP_004338826.1| - 0.53 9.8 42.2 0.1 12.2 2.0 4.7 2 2 1 3 3 2 0 PspA/IM30 family Sec8_exocyst PF04048.14 gi|327311929|ref|YP_004338826.1| - 0.59 10.0 24.6 6.3 6.7 0.5 4.5 2 2 0 3 3 3 0 Sec8 exocyst complex component specific domain DegS PF05384.11 gi|327311929|ref|YP_004338826.1| - 0.61 9.6 40.8 0.94 9.0 14.1 4.2 2 2 2 4 4 4 0 Sensor protein DegS CCDC144C PF14915.6 gi|327311929|ref|YP_004338826.1| - 0.63 9.1 39.0 0.12 11.5 8.0 2.1 2 0 0 2 2 2 0 CCDC144C protein coiled-coil region Prefoldin_2 PF01920.20 gi|327311929|ref|YP_004338826.1| - 0.63 10.0 46.6 1.2 9.1 7.6 6.7 3 2 5 8 8 8 0 Prefoldin subunit HOOK PF05622.12 gi|327311929|ref|YP_004338826.1| - 0.64 8.1 42.6 1.2 7.2 8.1 2.7 2 1 0 2 2 2 0 HOOK protein Taxilin PF09728.9 gi|327311929|ref|YP_004338826.1| - 0.65 9.1 44.3 0.37 9.9 35.9 3.6 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Spc24 PF08286.11 gi|327311929|ref|YP_004338826.1| - 0.68 10.2 37.2 2.3 8.5 2.8 5.5 1 1 3 4 4 4 0 Spc24 subunit of Ndc80 LPP PF04728.13 gi|327311929|ref|YP_004338826.1| - 0.71 10.3 22.2 1.6 9.1 0.4 6.2 2 2 3 5 5 4 0 Lipoprotein leucine-zipper UPF0184 PF03670.13 gi|327311929|ref|YP_004338826.1| - 0.8 10.1 23.3 0.79 10.2 4.3 4.3 2 2 2 4 4 4 0 Uncharacterised protein family (UPF0184) Tweety PF04906.13 gi|327311929|ref|YP_004338826.1| - 0.86 8.2 9.9 0.85 8.2 0.4 2.4 2 1 0 2 2 2 0 Tweety CENP-H PF05837.12 gi|327311929|ref|YP_004338826.1| - 0.87 10.0 41.3 0.98 9.9 15.2 4.2 2 2 2 4 4 4 0 Centromere protein H (CENP-H) KASH_CCD PF14662.6 gi|327311929|ref|YP_004338826.1| - 1 9.1 42.3 0.091 12.6 2.3 3.4 2 2 1 3 3 3 0 Coiled-coil region of CCDC155 or KASH DUF2203 PF09969.9 gi|327311929|ref|YP_004338826.1| - 1.1 10.0 30.1 1.4 9.7 2.7 4.5 2 2 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) CheZ PF04344.13 gi|327311929|ref|YP_004338826.1| - 1.1 9.1 20.6 1.3 8.9 0.4 3.6 1 1 2 4 4 4 0 Chemotaxis phosphatase, CheZ YkyA PF10368.9 gi|327311929|ref|YP_004338826.1| - 1.1 8.8 42.7 0.3 10.8 5.5 3.6 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein LXG PF04740.12 gi|327311929|ref|YP_004338826.1| - 1.2 8.8 23.5 0.59 9.8 2.2 4.3 2 2 1 3 3 3 0 LXG domain of WXG superfamily DivIVA PF05103.13 gi|327311929|ref|YP_004338826.1| - 1.2 9.2 41.5 2.8 8.0 8.8 4.5 2 1 1 3 3 3 0 DivIVA protein V_ATPase_I PF01496.19 gi|327311929|ref|YP_004338826.1| - 1.3 6.8 25.3 0.83 7.5 12.0 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Noelin-1 PF12308.8 gi|327311929|ref|YP_004338826.1| - 1.4 8.9 17.4 5.8 7.0 3.7 3.8 2 2 1 3 3 3 0 Neurogenesis glycoprotein BLOC1_2 PF10046.9 gi|327311929|ref|YP_004338826.1| - 1.5 9.1 34.0 14 6.1 4.0 5.8 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BORCS8 PF10167.9 gi|327311929|ref|YP_004338826.1| - 1.5 8.7 14.2 0.96 9.4 1.5 4.2 1 1 2 4 4 4 0 BLOC-1-related complex sub-unit 8 Occludin_ELL PF07303.13 gi|327311929|ref|YP_004338826.1| - 1.6 9.5 32.8 1.7 9.4 2.4 4.8 2 2 3 5 5 5 0 Occludin homology domain FliD_N PF02465.18 gi|327311929|ref|YP_004338826.1| - 1.6 9.4 20.6 27 5.5 0.0 4.7 2 2 2 4 4 4 0 Flagellar hook-associated protein 2 N-terminus PilO PF04350.13 gi|327311929|ref|YP_004338826.1| - 1.7 8.8 24.5 2.6 8.2 6.4 4.4 2 2 2 4 4 4 0 Pilus assembly protein, PilO PI_PP_I PF18363.1 gi|327311929|ref|YP_004338826.1| - 1.8 8.8 9.2 11 6.3 3.3 3.3 2 1 1 3 3 3 0 Phosphoinositide phosphatase insertion domain MAP65_ASE1 PF03999.12 gi|327311929|ref|YP_004338826.1| - 1.8 7.2 34.6 2.2 6.9 31.8 1.8 1 1 1 2 2 2 0 Microtubule associated protein (MAP65/ASE1 family) MtrB PF05440.12 gi|327311929|ref|YP_004338826.1| - 1.9 9.0 3.5 49 4.4 0.6 3.9 2 2 2 4 4 3 0 Tetrahydromethanopterin S-methyltransferase subunit B CENP-K PF11802.8 gi|327311929|ref|YP_004338826.1| - 1.9 8.0 39.4 0.019 14.6 17.1 2.9 1 1 1 3 3 3 0 Centromere-associated protein K ADIP PF11559.8 gi|327311929|ref|YP_004338826.1| - 1.9 8.5 44.0 0.24 11.5 6.8 3.7 2 2 2 4 4 2 0 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.8 gi|327311929|ref|YP_004338826.1| - 2 8.5 55.3 0.22 11.5 6.3 5.8 2 2 3 6 6 6 0 TATA element modulatory factor 1 DNA binding ZapB PF06005.12 gi|327311929|ref|YP_004338826.1| - 2.1 8.9 49.4 0.73 10.3 10.5 5.6 2 2 2 4 4 3 0 Cell division protein ZapB T3SSipB PF16535.5 gi|327311929|ref|YP_004338826.1| - 2.1 8.8 26.2 3.7 8.0 2.4 3.0 1 1 2 3 3 3 0 Type III cell invasion protein SipB DUF4472 PF14739.6 gi|327311929|ref|YP_004338826.1| - 2.2 9.0 34.6 1.8 9.4 1.0 4.3 2 2 2 4 4 4 0 Domain of unknown function (DUF4472) MT PF12777.7 gi|327311929|ref|YP_004338826.1| - 2.3 7.1 20.4 0.61 9.1 0.4 3.5 1 1 3 4 4 3 0 Microtubule-binding stalk of dynein motor Peptidase_C65 PF10275.9 gi|327311929|ref|YP_004338826.1| - 2.9 7.3 10.8 7.2 6.0 0.3 2.8 2 1 0 2 2 2 0 Peptidase C65 Otubain DUF2730 PF10805.8 gi|327311929|ref|YP_004338826.1| - 3.1 7.9 27.7 7 6.8 0.5 5.3 3 2 3 6 6 5 0 Protein of unknown function (DUF2730) Rootletin PF15035.6 gi|327311929|ref|YP_004338826.1| - 3.2 7.7 33.2 0.86 9.6 3.7 2.9 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion AATF-Che1 PF13339.6 gi|327311929|ref|YP_004338826.1| - 3.3 8.4 24.3 5.8 7.6 1.4 3.4 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor Rab5-bind PF09311.11 gi|327311929|ref|YP_004338826.1| - 3.8 6.8 37.5 1.1 8.6 29.4 2.8 1 1 0 2 2 2 0 Rabaptin-like protein Fib_alpha PF08702.10 gi|327311929|ref|YP_004338826.1| - 3.8 7.7 33.7 1.6 8.9 6.2 3.4 1 1 1 3 3 3 0 Fibrinogen alpha/beta chain family PEARLI-4 PF05278.12 gi|327311929|ref|YP_004338826.1| - 4.3 6.8 30.1 1.3 8.5 2.4 3.5 2 1 1 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) Cnn_1N PF07989.11 gi|327311929|ref|YP_004338826.1| - 4.4 7.5 40.0 13 6.0 1.5 5.8 2 2 2 4 4 4 0 Centrosomin N-terminal motif 1 Macoilin PF09726.9 gi|327311929|ref|YP_004338826.1| - 4.4 5.7 43.4 0.99 7.9 8.4 2.1 1 1 0 2 2 2 0 Macoilin family HAUS-augmin3 PF14932.6 gi|327311929|ref|YP_004338826.1| - 4.5 6.8 36.1 2.2 7.8 12.7 3.1 1 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 AI-2E_transport PF01594.16 gi|327311929|ref|YP_004338826.1| - 4.7 6.3 3.8 10 5.1 0.5 2.6 2 2 1 3 3 3 0 AI-2E family transporter UPF0449 PF15136.6 gi|327311929|ref|YP_004338826.1| - 5 7.6 31.9 0.9 10.0 5.7 5.5 2 2 2 5 5 5 0 Uncharacterised protein family UPF0449 SKA1 PF07160.12 gi|327311929|ref|YP_004338826.1| - 5.2 6.9 28.2 0.37 10.6 0.5 3.9 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 FlxA PF14282.6 gi|327311929|ref|YP_004338826.1| - 5.3 7.1 38.5 2 8.5 5.3 4.6 2 2 2 4 4 4 0 FlxA-like protein Swi5 PF07061.11 gi|327311929|ref|YP_004338826.1| - 5.4 7.2 38.2 1.6 8.9 0.2 6.4 2 2 3 5 5 5 0 Swi5 AIP3 PF03915.13 gi|327311929|ref|YP_004338826.1| - 5.5 6.0 30.9 3.6 6.6 6.5 2.2 1 1 0 2 2 2 0 Actin interacting protein 3 MAD PF05557.13 gi|327311929|ref|YP_004338826.1| - 6.4 5.0 45.4 0.4 9.0 8.2 2.1 1 1 1 2 2 2 0 Mitotic checkpoint protein DUF244 PF03112.14 gi|327311929|ref|YP_004338826.1| - 6.9 6.5 11.6 3.2 7.6 8.3 2.0 1 1 1 2 2 1 0 Uncharacterized protein family (ORF7) DUF Zwint PF15556.6 gi|327311929|ref|YP_004338826.1| - 7.1 6.1 27.4 0.2 11.2 3.6 3.2 2 1 1 3 3 2 0 ZW10 interactor TraF_2 PF13729.6 gi|327311929|ref|YP_004338826.1| - 8.2 5.7 12.2 3.7 6.8 0.4 3.0 2 1 1 3 3 3 0 F plasmid transfer operon, TraF, protein DUF373 PF04123.13 gi|327311930|ref|YP_004338827.1| - 9.6e-72 242.2 14.9 1.2e-71 241.9 14.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) UPF0020 PF01170.18 gi|327311931|ref|YP_004338828.1| - 4.5e-10 39.5 0.0 1.5e-08 34.6 0.0 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|327311931|ref|YP_004338828.1| - 5.3e-07 30.3 0.1 9.8e-07 29.4 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|327311931|ref|YP_004338828.1| - 1.1e-06 29.2 0.1 2.4e-06 28.1 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327311931|ref|YP_004338828.1| - 0.003 17.4 0.0 0.013 15.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|327311931|ref|YP_004338828.1| - 0.0041 16.9 0.0 0.0064 16.2 0.0 1.3 1 0 0 1 1 1 1 DNA methylase DUF1485 PF07364.12 gi|327311931|ref|YP_004338828.1| - 0.018 14.3 0.7 0.025 13.8 0.7 1.1 1 0 0 1 1 1 0 Metallopeptidase family M81 MethyltransfD12 PF02086.15 gi|327311931|ref|YP_004338828.1| - 0.026 14.2 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.6 gi|327311931|ref|YP_004338828.1| - 0.042 13.6 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|327311931|ref|YP_004338828.1| - 0.069 12.8 0.1 0.14 11.8 0.1 1.5 1 1 0 1 1 1 0 Conserved hypothetical protein 95 AviRa PF11599.8 gi|327311931|ref|YP_004338828.1| - 0.099 12.1 0.0 0.35 10.3 0.0 1.8 1 1 0 1 1 1 0 RRNA methyltransferase AviRa RNA_binding PF01877.17 gi|327311932|ref|YP_004338829.1| - 5.3e-16 59.0 0.0 6.9e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 RNA binding AAA_18 PF13238.6 gi|327311933|ref|YP_004338830.1| - 9.5e-12 45.6 0.0 1.6e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|327311933|ref|YP_004338830.1| - 5.4e-09 36.6 0.3 1.4e-08 35.3 0.1 1.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|327311933|ref|YP_004338830.1| - 0.00057 20.1 0.1 0.0012 19.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|327311933|ref|YP_004338830.1| - 0.053 13.4 0.1 0.64 9.8 0.0 2.0 2 0 0 2 2 2 0 Deoxynucleoside kinase ATPase PF06745.13 gi|327311933|ref|YP_004338830.1| - 0.07 12.5 0.2 0.26 10.6 0.1 1.9 1 1 1 2 2 2 0 KaiC CoaE PF01121.20 gi|327311933|ref|YP_004338830.1| - 0.1 12.2 0.2 2.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Dephospho-CoA kinase TRM PF02005.16 gi|327311934|ref|YP_004338831.1| - 1.8e-79 267.6 0.0 6.6e-79 265.8 0.0 1.7 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|327311934|ref|YP_004338831.1| - 0.0082 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|327311934|ref|YP_004338831.1| - 0.012 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_16 PF10294.9 gi|327311934|ref|YP_004338831.1| - 0.015 15.0 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase Methyltransf_25 PF13649.6 gi|327311934|ref|YP_004338831.1| - 0.059 14.1 0.0 0.11 13.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|327311934|ref|YP_004338831.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HTH_3 PF01381.22 gi|327311935|ref|YP_004338832.1| - 4.7e-11 42.6 0.0 3e-10 40.0 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix HTH_31 PF13560.6 gi|327311935|ref|YP_004338832.1| - 6.1e-11 42.5 0.6 3.2e-10 40.2 0.5 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|327311935|ref|YP_004338832.1| - 3.7e-07 30.1 0.0 8.1e-07 29.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|327311935|ref|YP_004338832.1| - 0.00029 20.7 0.1 0.0036 17.2 0.1 2.5 3 0 0 3 3 3 1 HTH domain HTH_23 PF13384.6 gi|327311935|ref|YP_004338832.1| - 0.00054 19.7 0.0 0.0014 18.4 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.6 gi|327311935|ref|YP_004338832.1| - 0.00093 19.0 0.1 0.0016 18.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|327311935|ref|YP_004338832.1| - 0.015 15.4 0.0 0.029 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|327311935|ref|YP_004338832.1| - 0.015 14.8 0.6 0.035 13.6 0.6 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_22 PF13309.6 gi|327311935|ref|YP_004338832.1| - 0.035 14.2 0.2 0.088 12.9 0.2 1.6 1 0 0 1 1 1 0 HTH domain HTH_17 PF12728.7 gi|327311935|ref|YP_004338832.1| - 0.088 13.0 0.2 0.75 10.0 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|327311935|ref|YP_004338832.1| - 0.13 12.7 0.0 0.38 11.2 0.0 1.8 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain DUF2126 PF09899.9 gi|327311935|ref|YP_004338832.1| - 0.13 10.3 0.0 0.18 9.9 0.0 1.1 1 0 0 1 1 1 0 Putative amidoligase enzyme (DUF2126) PUA PF01472.20 gi|327311936|ref|YP_004338833.1| - 4.2e-21 74.7 0.5 2.3e-20 72.3 0.1 2.1 2 1 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|327311936|ref|YP_004338833.1| - 8.5e-06 26.0 0.0 2.1e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|327311936|ref|YP_004338833.1| - 9.8e-06 25.8 0.0 1.5e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|327311936|ref|YP_004338833.1| - 0.0084 16.8 0.0 0.013 16.1 0.0 1.4 1 0 0 1 1 1 1 Pre-PUA-like domain PUA_3 PF17785.1 gi|327311936|ref|YP_004338833.1| - 0.07 12.9 0.2 0.4 10.5 0.1 2.2 2 0 0 2 2 2 0 PUA-like domain Peptidase_M43 PF05572.13 gi|327311936|ref|YP_004338833.1| - 0.26 11.2 0.0 0.36 10.7 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A APH PF01636.23 gi|327311937|ref|YP_004338834.1| - 6.5e-06 26.2 2.8 1.9e-05 24.7 2.8 1.7 1 1 0 1 1 1 1 Phosphotransferase enzyme family RIO1 PF01163.22 gi|327311937|ref|YP_004338834.1| - 0.00011 21.8 0.0 0.00014 21.6 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|327311937|ref|YP_004338834.1| - 0.00048 19.6 0.0 0.00067 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|327311937|ref|YP_004338834.1| - 0.0073 15.7 0.0 0.029 13.7 0.0 1.8 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Cas9_a PF18470.1 gi|327311937|ref|YP_004338834.1| - 0.17 11.4 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Cas9 alpha-helical lobe domain Auto_anti-p27 PF06677.12 gi|327311938|ref|YP_004338835.1| - 1.6e-11 44.1 0.5 2.3e-11 43.7 0.5 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.11 gi|327311938|ref|YP_004338835.1| - 3.2e-05 23.8 0.4 5.9e-05 22.9 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|327311938|ref|YP_004338835.1| - 0.00043 20.1 1.0 0.00065 19.6 1.0 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|327311938|ref|YP_004338835.1| - 0.0021 17.5 4.2 0.0054 16.2 4.2 1.7 1 1 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|327311938|ref|YP_004338835.1| - 0.0021 18.0 0.5 0.003 17.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|327311938|ref|YP_004338835.1| - 0.0039 17.1 1.3 0.0047 16.9 0.3 1.7 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|327311938|ref|YP_004338835.1| - 0.0046 17.0 1.0 3.1 8.0 0.0 2.5 2 0 0 2 2 2 2 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|327311938|ref|YP_004338835.1| - 0.0087 15.9 1.2 0.016 15.0 1.2 1.5 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS CpXC PF14353.6 gi|327311938|ref|YP_004338835.1| - 0.0097 15.9 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 CpXC protein zinc_ribbon_9 PF14369.6 gi|327311938|ref|YP_004338835.1| - 0.012 15.8 0.1 4.5 7.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon zinc-ribbons_6 PF07191.12 gi|327311938|ref|YP_004338835.1| - 0.013 15.5 0.5 0.019 15.0 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons GFA PF04828.14 gi|327311938|ref|YP_004338835.1| - 0.032 14.6 0.6 1.2 9.5 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-TFIIB PF13453.6 gi|327311938|ref|YP_004338835.1| - 0.039 13.3 0.9 0.074 12.4 0.9 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zf-RRPl_C4 PF17026.5 gi|327311938|ref|YP_004338835.1| - 0.052 13.6 0.7 0.071 13.2 0.7 1.2 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type zinc_ribbon_2 PF13240.6 gi|327311938|ref|YP_004338835.1| - 0.056 13.2 1.5 3 7.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC5 PF06221.13 gi|327311938|ref|YP_004338835.1| - 0.065 13.2 0.3 0.1 12.6 0.3 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-ribbon_3 PF13248.6 gi|327311938|ref|YP_004338835.1| - 0.071 12.6 2.8 0.2 11.1 2.8 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|327311938|ref|YP_004338835.1| - 0.087 12.9 1.8 0.087 12.9 1.8 2.1 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Sgf11 PF08209.11 gi|327311938|ref|YP_004338835.1| - 0.1 12.2 1.7 0.86 9.2 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RRN7 PF11781.8 gi|327311938|ref|YP_004338835.1| - 0.12 12.1 2.0 0.27 10.9 2.0 1.5 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf_UBZ PF18439.1 gi|327311938|ref|YP_004338835.1| - 0.13 11.9 0.6 3.5 7.3 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2757 PF10955.8 gi|327311938|ref|YP_004338835.1| - 0.13 12.6 1.4 3.2 8.1 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) zinc_ribbon_10 PF10058.9 gi|327311938|ref|YP_004338835.1| - 0.19 11.5 3.4 6.1 6.7 0.1 2.5 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-HIT PF04438.16 gi|327311938|ref|YP_004338835.1| - 0.32 10.9 4.3 0.68 9.9 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger ADH_N PF08240.12 gi|327311939|ref|YP_004338836.1| - 1.2e-33 115.2 0.5 2.6e-33 114.2 0.5 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|327311939|ref|YP_004338836.1| - 1.6e-30 105.7 0.3 2.8e-30 105.0 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|327311939|ref|YP_004338836.1| - 1e-20 75.1 0.8 1.6e-20 74.5 0.8 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|327311939|ref|YP_004338836.1| - 7.5e-07 28.8 0.9 1.1e-06 28.3 0.9 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 gi|327311939|ref|YP_004338836.1| - 0.017 14.5 0.1 0.028 13.8 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|327311939|ref|YP_004338836.1| - 0.055 13.7 0.6 0.12 12.6 0.6 1.6 1 0 0 1 1 1 0 TrkA-N domain Radical_SAM PF04055.21 gi|327311939|ref|YP_004338836.1| - 0.13 12.7 4.1 0.13 12.7 0.4 2.6 2 1 0 2 2 2 0 Radical SAM superfamily Aldose_epim PF01263.20 gi|327311940|ref|YP_004338837.1| - 3.8e-32 111.8 0.0 5.9e-32 111.2 0.0 1.3 1 1 0 1 1 1 1 Aldose 1-epimerase Corona_6B_7B PF03262.13 gi|327311940|ref|YP_004338837.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Coronavirus 6B/7B protein FlgN PF05130.12 gi|327311941|ref|YP_004338838.1| - 0.0021 18.6 17.4 0.023 15.2 5.0 2.1 1 1 1 2 2 2 2 FlgN protein Prominin PF05478.11 gi|327311941|ref|YP_004338838.1| - 0.0022 16.1 1.7 0.0024 15.9 1.7 1.0 1 0 0 1 1 1 1 Prominin Baculo_PEP_C PF04513.12 gi|327311941|ref|YP_004338838.1| - 0.0023 18.0 5.8 0.043 13.8 0.7 2.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus Tektin PF03148.14 gi|327311941|ref|YP_004338838.1| - 0.0049 15.7 7.3 0.016 14.0 1.3 2.1 1 1 1 2 2 2 1 Tektin family Atg14 PF10186.9 gi|327311941|ref|YP_004338838.1| - 0.011 14.8 6.8 0.013 14.7 6.8 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 EzrA PF06160.12 gi|327311941|ref|YP_004338838.1| - 0.012 13.9 4.8 0.014 13.6 4.8 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Fib_alpha PF08702.10 gi|327311941|ref|YP_004338838.1| - 0.013 15.6 2.1 0.9 9.7 0.1 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.12 gi|327311941|ref|YP_004338838.1| - 0.013 15.5 2.6 0.079 13.0 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) PI3K_P85_iSH2 PF16454.5 gi|327311941|ref|YP_004338838.1| - 0.016 14.8 2.3 0.21 11.2 0.6 2.0 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF16 PF01519.16 gi|327311941|ref|YP_004338838.1| - 0.019 15.5 1.8 0.27 11.7 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF2935 PF11155.8 gi|327311941|ref|YP_004338838.1| - 0.023 15.0 1.4 0.043 14.1 1.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) Sec34 PF04136.15 gi|327311941|ref|YP_004338838.1| - 0.025 14.4 2.0 0.057 13.3 1.9 1.7 1 1 0 1 1 1 0 Sec34-like family NPV_P10 PF05531.12 gi|327311941|ref|YP_004338838.1| - 0.027 14.9 2.6 0.7 10.4 0.2 2.4 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|327311941|ref|YP_004338838.1| - 0.027 14.7 4.4 0.13 12.6 0.8 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Apolipoprotein PF01442.18 gi|327311941|ref|YP_004338838.1| - 0.031 14.1 12.7 0.041 13.8 12.7 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Streptin-Immun PF11083.8 gi|327311941|ref|YP_004338838.1| - 0.032 14.6 2.2 0.11 12.9 1.2 2.1 1 1 1 2 2 2 0 Lantibiotic streptin immunity protein ZnuA PF01297.17 gi|327311941|ref|YP_004338838.1| - 0.032 13.6 4.8 0.12 11.8 0.5 2.1 1 1 1 2 2 2 0 Zinc-uptake complex component A periplasmic CR6_interact PF10147.9 gi|327311941|ref|YP_004338838.1| - 0.033 13.9 7.3 0.15 11.8 1.2 2.0 1 1 1 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 T2SSF PF00482.23 gi|327311941|ref|YP_004338838.1| - 0.042 13.8 7.9 0.97 9.4 2.4 2.3 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F CbbQ_C PF08406.10 gi|327311941|ref|YP_004338838.1| - 0.049 13.9 8.2 1.5 9.1 3.2 2.3 1 1 1 2 2 2 0 CbbQ/NirQ/NorQ C-terminal Cnn_1N PF07989.11 gi|327311941|ref|YP_004338838.1| - 0.065 13.4 3.0 3.1 8.0 0.4 2.4 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 Spectrin PF00435.21 gi|327311941|ref|YP_004338838.1| - 0.069 13.6 5.1 0.49 10.9 5.0 2.0 1 1 1 2 2 2 0 Spectrin repeat ECH_2 PF16113.5 gi|327311941|ref|YP_004338838.1| - 0.076 12.5 3.4 0.087 12.3 3.4 1.1 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF948 PF06103.11 gi|327311941|ref|YP_004338838.1| - 0.077 13.3 3.1 2 8.8 3.1 2.2 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) RRN3 PF05327.11 gi|327311941|ref|YP_004338838.1| - 0.087 11.4 1.1 0.11 11.0 0.5 1.4 1 1 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 DUF885 PF05960.11 gi|327311941|ref|YP_004338838.1| - 0.12 12.0 8.2 0.15 11.7 8.2 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) DASH_Duo1 PF08651.10 gi|327311941|ref|YP_004338838.1| - 0.13 12.0 3.5 3.2 7.6 0.2 2.9 2 1 1 3 3 3 0 DASH complex subunit Duo1 AAA_13 PF13166.6 gi|327311941|ref|YP_004338838.1| - 0.14 10.8 4.8 0.15 10.6 4.8 1.0 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|327311941|ref|YP_004338838.1| - 0.18 12.2 2.8 3 8.3 0.6 2.6 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) CK2S PF15011.6 gi|327311941|ref|YP_004338838.1| - 0.18 11.7 5.5 0.11 12.3 1.3 2.0 1 1 1 2 2 2 0 Casein Kinase 2 substrate TMF_DNA_bd PF12329.8 gi|327311941|ref|YP_004338838.1| - 0.26 11.3 7.5 0.17 11.9 1.5 2.5 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding CENP-H PF05837.12 gi|327311941|ref|YP_004338838.1| - 0.29 11.5 10.8 1.3 9.5 7.3 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) ATG16 PF08614.11 gi|327311941|ref|YP_004338838.1| - 0.39 10.9 13.5 1.9 8.7 8.9 2.1 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) MbeD_MobD PF04899.12 gi|327311941|ref|YP_004338838.1| - 0.4 10.8 6.0 26 5.0 4.5 3.0 1 1 1 2 2 2 0 MbeD/MobD like DMSP_lyase PF16867.5 gi|327311941|ref|YP_004338838.1| - 0.4 10.3 2.4 2.5 7.7 1.4 2.0 1 1 1 2 2 2 0 Dimethlysulfonioproprionate lyase UPF0242 PF06785.11 gi|327311941|ref|YP_004338838.1| - 0.47 10.5 4.9 0.64 10.1 4.9 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus HTH_37 PF13744.6 gi|327311941|ref|YP_004338838.1| - 0.49 10.4 8.0 0.34 10.9 2.4 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain ADIP PF11559.8 gi|327311941|ref|YP_004338838.1| - 0.49 10.5 8.9 0.78 9.8 6.9 1.9 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Syntaxin-6_N PF09177.11 gi|327311941|ref|YP_004338838.1| - 0.52 10.9 5.6 5.3 7.7 0.6 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Mobilization_B PF17511.2 gi|327311941|ref|YP_004338838.1| - 0.54 10.6 8.5 1.3 9.4 8.5 1.7 1 1 0 1 1 1 0 Mobilization protein B TMPIT PF07851.13 gi|327311941|ref|YP_004338838.1| - 0.54 9.4 1.5 0.72 9.0 1.5 1.3 1 1 0 1 1 1 0 TMPIT-like protein Spc7 PF08317.11 gi|327311941|ref|YP_004338838.1| - 0.58 9.0 9.8 0.86 8.4 9.8 1.3 1 1 0 1 1 1 0 Spc7 kinetochore protein HAMP PF00672.25 gi|327311941|ref|YP_004338838.1| - 0.64 10.4 10.0 8.5 6.8 0.0 3.8 4 1 0 4 4 3 0 HAMP domain SlyX PF04102.12 gi|327311941|ref|YP_004338838.1| - 0.95 10.1 10.0 53 4.5 0.2 3.1 1 1 1 2 2 2 0 SlyX LMBR1 PF04791.16 gi|327311941|ref|YP_004338838.1| - 1.1 8.1 2.2 1.2 8.0 2.2 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein THOC7 PF05615.13 gi|327311941|ref|YP_004338838.1| - 1.1 9.5 11.6 8.4 6.7 11.6 2.0 1 1 0 1 1 1 0 Tho complex subunit 7 Acyl-CoA_dh_C PF12806.7 gi|327311941|ref|YP_004338838.1| - 1.2 9.3 10.0 3.2 7.9 1.6 2.6 1 1 2 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like DASH_Dad3 PF08656.10 gi|327311941|ref|YP_004338838.1| - 1.3 9.1 4.4 30 4.8 4.5 2.7 1 1 0 1 1 1 0 DASH complex subunit Dad3 Phage_GPO PF05929.11 gi|327311941|ref|YP_004338838.1| - 1.4 8.5 7.5 6.5 6.3 1.5 2.0 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Exog_C PF18026.1 gi|327311941|ref|YP_004338838.1| - 1.5 9.0 4.4 15 5.7 0.1 3.0 2 1 1 3 3 3 0 Endo/exonuclease (EXOG) C-terminal domain FUSC PF04632.12 gi|327311941|ref|YP_004338838.1| - 1.8 7.0 11.7 2 6.8 11.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family GvpL_GvpF PF06386.11 gi|327311941|ref|YP_004338838.1| - 2.4 8.0 10.1 5.1 6.9 9.8 1.7 1 1 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF Mod_r PF07200.13 gi|327311941|ref|YP_004338838.1| - 2.5 8.2 9.0 11 6.2 9.0 1.9 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein DUF4055 PF13264.6 gi|327311941|ref|YP_004338838.1| - 4.5 7.4 7.9 1.7 8.8 3.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4055) ERM PF00769.19 gi|327311941|ref|YP_004338838.1| - 6.7 6.5 14.6 7.6 6.3 14.6 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family HTH_5 PF01022.20 gi|327311942|ref|YP_004338839.1| - 2.3e-12 46.6 0.2 3.5e-12 46.0 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|327311942|ref|YP_004338839.1| - 1.8e-06 27.7 0.0 2.8e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|327311942|ref|YP_004338839.1| - 3.3e-06 26.6 0.1 4.9e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|327311942|ref|YP_004338839.1| - 8.6e-06 25.7 0.0 1.6e-05 24.9 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain DprA_WH PF17782.1 gi|327311942|ref|YP_004338839.1| - 2.6e-05 24.3 0.0 3.4e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|327311942|ref|YP_004338839.1| - 0.00018 21.3 0.0 0.00024 21.0 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|327311942|ref|YP_004338839.1| - 0.00036 20.4 0.1 0.00059 19.7 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|327311942|ref|YP_004338839.1| - 0.00089 19.2 0.6 0.0011 18.9 0.6 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix GerE PF00196.19 gi|327311942|ref|YP_004338839.1| - 0.001 18.6 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family MarR PF01047.22 gi|327311942|ref|YP_004338839.1| - 0.0011 18.8 0.1 0.0016 18.3 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|327311942|ref|YP_004338839.1| - 0.0011 18.7 0.2 0.0032 17.2 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_11 PF08279.12 gi|327311942|ref|YP_004338839.1| - 0.0013 18.6 0.0 0.0017 18.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain FaeA PF04703.12 gi|327311942|ref|YP_004338839.1| - 0.0015 18.9 0.1 0.0019 18.6 0.1 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_28 PF13518.6 gi|327311942|ref|YP_004338839.1| - 0.0026 17.8 0.0 0.0041 17.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|327311942|ref|YP_004338839.1| - 0.0027 17.7 0.0 0.0037 17.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix B-block_TFIIIC PF04182.12 gi|327311942|ref|YP_004338839.1| - 0.0032 17.6 0.1 0.0039 17.3 0.1 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Rrf2 PF02082.20 gi|327311942|ref|YP_004338839.1| - 0.0045 17.3 0.1 0.0062 16.9 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Tnp_ISL3 PF13542.6 gi|327311942|ref|YP_004338839.1| - 0.0055 16.1 0.0 0.0086 15.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 DUF4423 PF14394.6 gi|327311942|ref|YP_004338839.1| - 0.0076 16.0 0.0 0.01 15.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) NUMOD1 PF07453.13 gi|327311942|ref|YP_004338839.1| - 0.0097 16.1 0.1 0.018 15.3 0.1 1.5 1 0 0 1 1 1 1 NUMOD1 domain DUF2089 PF09862.9 gi|327311942|ref|YP_004338839.1| - 0.0097 15.9 0.1 0.0097 15.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_27 PF13463.6 gi|327311942|ref|YP_004338839.1| - 0.01 16.3 0.1 0.014 15.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.9 gi|327311942|ref|YP_004338839.1| - 0.011 16.0 0.1 0.016 15.5 0.1 1.5 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) Sigma70_r4_2 PF08281.12 gi|327311942|ref|YP_004338839.1| - 0.013 15.1 0.0 0.027 14.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|327311942|ref|YP_004338839.1| - 0.021 14.6 0.1 0.041 13.7 0.0 1.5 2 0 0 2 2 2 0 LexA DNA binding domain HTH_9 PF08221.11 gi|327311942|ref|YP_004338839.1| - 0.029 14.4 0.1 0.079 13.1 0.1 1.6 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Fe_dep_repress PF01325.19 gi|327311942|ref|YP_004338839.1| - 0.031 14.5 0.0 0.053 13.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sulfolobus_pRN PF05584.11 gi|327311942|ref|YP_004338839.1| - 0.037 14.1 0.3 0.044 13.8 0.3 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_DeoR PF08220.12 gi|327311942|ref|YP_004338839.1| - 0.04 13.7 0.0 0.053 13.3 0.0 1.2 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain TnsD PF15978.5 gi|327311942|ref|YP_004338839.1| - 0.051 12.6 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_30 PF13556.6 gi|327311942|ref|YP_004338839.1| - 0.078 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain GntR PF00392.21 gi|327311942|ref|YP_004338839.1| - 0.14 11.8 0.0 0.41 10.3 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Hydantoinase_B PF02538.14 gi|327311943|ref|YP_004338840.1| - 2.5e-172 573.9 0.2 2.8e-172 573.8 0.2 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|327311944|ref|YP_004338841.1| - 8.3e-98 327.2 2.4 8.3e-98 327.2 2.4 2.1 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|327311944|ref|YP_004338841.1| - 3.8e-46 157.0 0.0 1.3e-45 155.3 0.0 1.9 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|327311944|ref|YP_004338841.1| - 0.0019 17.8 0.1 0.018 14.5 0.0 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|327311944|ref|YP_004338841.1| - 0.021 13.4 1.8 2.6 6.5 0.0 2.8 2 1 1 3 3 3 0 MutL protein MFS_1 PF07690.16 gi|327311945|ref|YP_004338842.1| - 2.1e-21 76.3 66.5 3.9e-11 42.5 41.8 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|327311945|ref|YP_004338842.1| - 3.4e-19 69.1 36.0 1.4e-15 57.1 12.4 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter Cation_ATPase_C PF00689.21 gi|327311945|ref|YP_004338842.1| - 3 7.5 19.3 0.012 15.3 5.9 2.9 1 1 0 2 2 2 0 Cation transporting ATPase, C-terminus UCR_UQCRX_QCR9 PF05365.12 gi|327311945|ref|YP_004338842.1| - 3.2 7.8 0.0 3.2 7.8 0.0 3.5 3 0 0 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF998 PF06197.13 gi|327311946|ref|YP_004338843.1| - 2.9e-22 79.2 23.0 3.3e-22 79.0 23.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) YfhO PF09586.10 gi|327311946|ref|YP_004338843.1| - 0.23 9.7 6.0 0.25 9.6 6.0 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO LysE PF01810.18 gi|327311947|ref|YP_004338844.1| - 0.0053 16.2 8.4 0.0054 16.2 0.8 2.5 2 0 0 2 2 2 2 LysE type translocator NicO PF03824.16 gi|327311947|ref|YP_004338844.1| - 0.023 14.0 0.6 0.023 14.0 0.6 2.0 2 0 0 2 2 2 0 High-affinity nickel-transport protein DsbD_2 PF13386.6 gi|327311947|ref|YP_004338844.1| - 0.31 11.0 17.2 0.065 13.2 9.4 2.7 1 1 1 3 3 3 0 Cytochrome C biogenesis protein transmembrane region Mtp PF03821.16 gi|327311950|ref|YP_004338847.1| - 0.0023 17.6 1.3 0.0023 17.6 1.3 2.5 3 0 0 3 3 3 1 Golgi 4-transmembrane spanning transporter EB_dh PF09459.10 gi|327311951|ref|YP_004338848.1| - 7.4e-64 216.1 0.0 1e-63 215.6 0.0 1.2 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Glycophorin_A PF01102.18 gi|327311951|ref|YP_004338848.1| - 0.026 14.8 2.7 0.043 14.1 2.7 1.3 1 0 0 1 1 1 0 Glycophorin A RIFIN PF02009.16 gi|327311951|ref|YP_004338848.1| - 0.14 12.0 1.4 0.19 11.6 1.4 1.1 1 0 0 1 1 1 0 Rifin Stevor PF17410.2 gi|327311951|ref|YP_004338848.1| - 0.17 11.4 0.5 0.24 10.9 0.5 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame DUF5305 PF17231.2 gi|327311951|ref|YP_004338848.1| - 0.38 10.1 4.8 0.62 9.4 4.8 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) SSP160 PF06933.11 gi|327311951|ref|YP_004338848.1| - 0.49 8.5 15.0 0.71 8.0 15.0 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF3439 PF11921.8 gi|327311951|ref|YP_004338848.1| - 0.71 9.8 16.2 1.4 8.9 16.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) TMEM154 PF15102.6 gi|327311951|ref|YP_004338848.1| - 0.82 9.6 5.2 1.4 8.8 5.2 1.3 1 0 0 1 1 1 0 TMEM154 protein family Mucin PF01456.17 gi|327311951|ref|YP_004338848.1| - 1.5 8.8 25.4 2.6 8.0 25.4 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein MGC-24 PF05283.11 gi|327311951|ref|YP_004338848.1| - 2.1 8.8 8.0 3.2 8.2 8.0 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Glycoprotein PF03409.15 gi|327311951|ref|YP_004338848.1| - 6.9 5.4 14.2 10 4.8 14.2 1.2 1 0 0 1 1 1 0 Transmembrane glycoprotein Rieske PF00355.26 gi|327311952|ref|YP_004338849.1| - 8.8e-11 41.6 0.0 1.5e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Cytochrom_B_N_2 PF13631.6 gi|327311953|ref|YP_004338850.1| - 1.6e-40 138.8 7.7 1.6e-40 138.8 7.7 2.9 3 0 0 3 3 3 2 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|327311953|ref|YP_004338850.1| - 1.5e-16 60.8 13.2 3.6e-16 59.5 13.2 1.6 1 0 0 1 1 1 1 Cytochrome b/b6/petB ECH_1 PF00378.20 gi|327311954|ref|YP_004338851.1| - 1.3e-17 63.9 0.0 1.7e-17 63.6 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|327311954|ref|YP_004338851.1| - 1.4e-11 44.5 0.0 2.4e-11 43.7 0.0 1.5 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase SurE PF01975.17 gi|327311955|ref|YP_004338852.1| - 9.9e-48 162.5 0.0 1.2e-47 162.2 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE DUF998 PF06197.13 gi|327311956|ref|YP_004338853.1| - 1.6e-18 67.0 22.8 2e-18 66.6 22.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.9 gi|327311956|ref|YP_004338853.1| - 4.8e-06 26.3 3.5 6.7e-06 25.8 3.5 1.3 1 0 0 1 1 1 1 Frag1/DRAM/Sfk1 family AA_permease_2 PF13520.6 gi|327311957|ref|YP_004338854.1| - 9.8e-24 83.9 44.3 2e-23 82.9 44.3 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|327311957|ref|YP_004338854.1| - 1.4e-20 73.3 41.0 4.3e-20 71.8 41.0 1.7 1 1 0 1 1 1 1 Amino acid permease SLATT_5 PF18160.1 gi|327311957|ref|YP_004338854.1| - 0.1 11.9 0.0 0.1 11.9 0.0 2.2 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 TauE PF01925.19 gi|327311959|ref|YP_004338856.1| - 8.6e-49 166.3 40.0 9.7e-49 166.1 40.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CxxCxxCC PF03692.15 gi|327311960|ref|YP_004338857.1| - 0.0063 17.2 0.0 0.0092 16.7 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain PIN PF01850.21 gi|327311961|ref|YP_004338858.1| - 7.8e-14 52.2 0.4 9.6e-14 51.9 0.4 1.1 1 0 0 1 1 1 1 PIN domain MraZ PF02381.18 gi|327311962|ref|YP_004338859.1| - 0.005 16.8 0.1 0.0073 16.3 0.1 1.3 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 gi|327311962|ref|YP_004338859.1| - 0.0067 16.3 0.6 0.018 15.0 0.6 1.7 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF2198 PF09964.9 gi|327311963|ref|YP_004338860.1| - 1 9.5 9.9 0.062 13.4 4.5 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) Wzz PF02706.15 gi|327311963|ref|YP_004338860.1| - 1.4 9.3 5.5 1.7 9.0 4.5 1.7 1 1 0 1 1 1 0 Chain length determinant protein ATPase_gene1 PF09527.10 gi|327311963|ref|YP_004338860.1| - 2.2 8.5 14.4 0.87 9.8 8.1 2.3 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter MFS_1 PF07690.16 gi|327311964|ref|YP_004338861.1| - 9.6e-20 70.8 49.4 3.5e-12 45.9 29.2 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|327311964|ref|YP_004338861.1| - 0.33 9.2 8.6 3.2 5.9 0.2 3.2 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Glyco_transf_5 PF08323.11 gi|327311966|ref|YP_004338863.1| - 9e-39 133.6 0.0 1.5e-38 132.9 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|327311966|ref|YP_004338863.1| - 3.7e-24 85.2 0.0 8.5e-24 84.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327311966|ref|YP_004338863.1| - 4.5e-19 69.2 0.1 1.9e-18 67.2 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|327311966|ref|YP_004338863.1| - 1.3e-10 41.6 2.4 1.4e-09 38.2 2.4 2.4 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|327311966|ref|YP_004338863.1| - 2.1e-10 41.3 3.9 2.1e-10 41.3 3.9 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain NTP_transferase PF00483.23 gi|327311967|ref|YP_004338864.1| - 6.9e-37 127.4 0.0 9.1e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|327311967|ref|YP_004338864.1| - 1.9e-11 43.2 9.6 0.0017 18.0 0.3 5.5 1 1 4 5 5 5 5 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|327311967|ref|YP_004338864.1| - 0.00043 20.7 0.0 0.00055 20.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF4954 PF16314.5 gi|327311967|ref|YP_004338864.1| - 0.0074 14.5 0.2 0.0098 14.1 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|327311967|ref|YP_004338864.1| - 0.023 13.6 0.0 0.051 12.5 0.0 1.6 2 0 0 2 2 2 0 L-fucokinase Trp_syntA PF00290.20 gi|327311968|ref|YP_004338865.1| - 6.2e-16 58.0 0.0 1.1e-15 57.3 0.0 1.3 1 1 0 1 1 1 1 Tryptophan synthase alpha chain NanE PF04131.14 gi|327311968|ref|YP_004338865.1| - 0.002 17.3 0.2 0.008 15.4 0.1 1.9 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|327311968|ref|YP_004338865.1| - 0.013 14.5 0.1 0.022 13.8 0.1 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase PA PF02225.22 gi|327311968|ref|YP_004338865.1| - 0.016 15.2 1.6 4.1 7.5 0.2 2.2 1 1 1 2 2 2 0 PA domain His_biosynth PF00977.21 gi|327311968|ref|YP_004338865.1| - 0.094 12.2 0.0 0.28 10.6 0.0 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein IGPS PF00218.21 gi|327311968|ref|YP_004338865.1| - 0.2 10.8 0.0 0.91 8.6 0.0 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase EamA PF00892.20 gi|327311969|ref|YP_004338866.1| - 1.5e-31 109.4 40.1 2.5e-19 69.8 16.5 2.2 2 0 0 2 2 2 2 EamA-like transporter family Phtf-FEM1B_bdg PF12129.8 gi|327311969|ref|YP_004338866.1| - 0.19 11.6 0.6 0.36 10.7 0.6 1.5 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor PALP PF00291.25 gi|327311970|ref|YP_004338867.1| - 1.3e-43 149.5 0.4 1.6e-43 149.2 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glycos_transf_3 PF00591.21 gi|327311971|ref|YP_004338868.1| - 2.2e-79 266.7 0.1 2.7e-79 266.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|327311971|ref|YP_004338868.1| - 3.2e-16 58.9 0.6 7.7e-16 57.7 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|327311972|ref|YP_004338869.1| - 1.1e-18 67.8 0.0 1.4e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Sec1 PF00995.23 gi|327311973|ref|YP_004338870.1| - 0.016 14.4 0.0 0.016 14.4 0.0 1.1 1 0 0 1 1 1 0 Sec1 family FUSC PF04632.12 gi|327311973|ref|YP_004338870.1| - 0.031 12.8 8.1 0.042 12.4 8.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family BLOC1_2 PF10046.9 gi|327311973|ref|YP_004338870.1| - 0.054 13.8 0.0 0.14 12.5 0.0 1.7 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.22 gi|327311973|ref|YP_004338870.1| - 0.12 12.6 1.5 0.2 11.9 1.5 1.4 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DASH_Dam1 PF08653.10 gi|327311973|ref|YP_004338870.1| - 0.15 11.9 0.0 0.38 10.6 0.0 1.6 1 0 0 1 1 1 0 DASH complex subunit Dam1 LTXXQ PF07813.12 gi|327311973|ref|YP_004338870.1| - 0.2 12.4 2.8 0.59 10.9 2.8 1.8 2 1 0 2 2 2 0 LTXXQ motif family protein T2SSF PF00482.23 gi|327311973|ref|YP_004338870.1| - 0.6 10.1 4.1 0.97 9.4 4.1 1.5 1 1 0 1 1 1 0 Type II secretion system (T2SS), protein F Isochorismatase PF00857.20 gi|327311974|ref|YP_004338871.1| - 1.2e-35 123.2 0.0 1.5e-35 123.0 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family ABC_tran PF00005.27 gi|327311975|ref|YP_004338872.1| - 9.7e-24 84.4 0.0 1.4e-23 83.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327311975|ref|YP_004338872.1| - 5.8e-14 52.6 0.0 3.4e-08 33.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|327311975|ref|YP_004338872.1| - 0.00014 22.3 0.1 0.00031 21.2 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|327311975|ref|YP_004338872.1| - 0.00048 19.8 0.1 0.00098 18.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|327311975|ref|YP_004338872.1| - 0.0036 17.8 0.0 0.011 16.2 0.1 1.7 2 0 0 2 2 2 1 AAA domain KdpD PF02702.17 gi|327311975|ref|YP_004338872.1| - 0.016 14.7 0.0 0.035 13.6 0.0 1.5 1 1 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain SRP54 PF00448.22 gi|327311975|ref|YP_004338872.1| - 0.022 14.4 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|327311975|ref|YP_004338872.1| - 0.023 14.4 0.0 0.061 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|327311975|ref|YP_004338872.1| - 0.029 14.4 0.1 0.052 13.6 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MukB PF04310.12 gi|327311975|ref|YP_004338872.1| - 0.034 14.0 0.1 0.06 13.2 0.1 1.4 1 1 0 1 1 1 0 MukB N-terminal AAA PF00004.29 gi|327311975|ref|YP_004338872.1| - 0.036 14.5 0.0 0.18 12.2 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|327311975|ref|YP_004338872.1| - 0.037 14.3 0.0 0.086 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|327311975|ref|YP_004338872.1| - 0.045 13.5 0.0 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.6 gi|327311975|ref|YP_004338872.1| - 0.052 13.6 0.1 1.9 8.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|327311975|ref|YP_004338872.1| - 0.076 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_5 PF07728.14 gi|327311975|ref|YP_004338872.1| - 0.088 12.8 0.1 0.23 11.5 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|327311975|ref|YP_004338872.1| - 0.095 12.4 0.1 1.3 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|327311975|ref|YP_004338872.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|327311975|ref|YP_004338872.1| - 0.16 10.6 0.0 0.23 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|327311975|ref|YP_004338872.1| - 0.19 11.9 0.0 0.4 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|327311976|ref|YP_004338873.1| - 9.2e-07 28.5 17.3 9.2e-07 28.5 17.3 1.9 2 1 0 2 2 2 1 ABC-2 type transporter DUF677 PF05055.12 gi|327311976|ref|YP_004338873.1| - 4.5 6.1 4.3 6.6 5.5 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) ABC2_membrane PF01061.24 gi|327311977|ref|YP_004338874.1| - 3.5e-07 29.9 18.3 3.5e-07 29.9 18.3 1.7 1 1 1 2 2 2 1 ABC-2 type transporter ATPase PF06745.13 gi|327311978|ref|YP_004338875.1| - 1.8e-44 151.8 0.3 2e-42 145.2 0.3 2.2 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|327311978|ref|YP_004338875.1| - 2.5e-07 30.5 0.1 5.6e-07 29.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|327311978|ref|YP_004338875.1| - 2.4e-06 27.0 0.0 4.2e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|327311978|ref|YP_004338875.1| - 1.7e-05 24.3 0.2 0.00016 21.1 0.0 2.4 3 0 0 3 3 3 1 DnaB-like helicase C terminal domain RecA PF00154.21 gi|327311978|ref|YP_004338875.1| - 2.5e-05 23.9 0.0 4.4e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein IstB_IS21 PF01695.17 gi|327311978|ref|YP_004338875.1| - 3.5e-05 23.6 0.0 8.6e-05 22.3 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein GvpD PF07088.11 gi|327311978|ref|YP_004338875.1| - 0.00048 18.9 0.2 0.038 12.6 0.1 2.7 1 1 1 2 2 2 1 GvpD gas vesicle protein AAA_16 PF13191.6 gi|327311978|ref|YP_004338875.1| - 0.0071 16.7 0.0 0.014 15.8 0.0 1.7 2 1 0 2 2 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|327311978|ref|YP_004338875.1| - 0.0087 16.1 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|327311978|ref|YP_004338875.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase PAXNEB PF05625.11 gi|327311978|ref|YP_004338875.1| - 0.048 12.8 0.0 0.15 11.2 0.0 1.7 2 0 0 2 2 2 0 PAXNEB protein DAP3 PF10236.9 gi|327311978|ref|YP_004338875.1| - 0.066 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_22 PF13401.6 gi|327311978|ref|YP_004338875.1| - 0.076 13.3 0.0 0.22 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|327311978|ref|YP_004338875.1| - 0.086 12.6 0.0 0.7 9.6 0.0 2.4 1 1 0 2 2 2 0 AAA domain MEDS PF14417.6 gi|327311978|ref|YP_004338875.1| - 0.1 12.4 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain DUF2075 PF09848.9 gi|327311978|ref|YP_004338875.1| - 0.12 11.5 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|327311978|ref|YP_004338875.1| - 0.14 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|327311978|ref|YP_004338875.1| - 0.15 12.5 0.0 0.33 11.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Ribosomal_L30 PF00327.20 gi|327311979|ref|YP_004338876.1| - 1.3e-09 37.8 0.0 2.5e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 gi|327311980|ref|YP_004338877.1| - 1.5e-24 85.2 0.1 2.7e-24 84.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|327311980|ref|YP_004338877.1| - 1.7e-23 82.4 0.4 3.4e-23 81.4 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Fer2_BFD PF04324.15 gi|327311980|ref|YP_004338877.1| - 0.051 13.9 3.2 2.5 8.5 0.9 3.4 4 0 0 4 4 4 0 BFD-like [2Fe-2S] binding domain NTP_transf_2 PF01909.23 gi|327311981|ref|YP_004338878.1| - 4.5e-13 49.3 0.0 6.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327311981|ref|YP_004338878.1| - 1.9e-08 34.3 0.0 2.4e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|327311981|ref|YP_004338878.1| - 0.00052 20.2 0.0 0.00078 19.6 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|327311981|ref|YP_004338878.1| - 0.046 13.5 0.0 0.06 13.2 0.0 1.4 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|327311982|ref|YP_004338879.1| - 2.3e-25 89.0 2.4 2.8e-25 88.8 2.4 1.0 1 0 0 1 1 1 1 HEPN domain RNase_HII PF01351.18 gi|327311983|ref|YP_004338880.1| - 1e-36 126.6 0.0 1.3e-36 126.4 0.0 1.1 1 0 0 1 1 1 1 Ribonuclease HII DUF629 PF04780.12 gi|327311984|ref|YP_004338881.1| - 0.00087 17.9 0.0 0.00087 17.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF629) zf-C2H2_4 PF13894.6 gi|327311984|ref|YP_004338881.1| - 0.003 18.3 0.2 0.0048 17.6 0.2 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger Ribosomal_L37e PF01907.19 gi|327311984|ref|YP_004338881.1| - 0.0041 17.3 0.3 0.0051 16.9 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e zf-BED PF02892.15 gi|327311984|ref|YP_004338881.1| - 0.0085 16.1 0.2 0.013 15.5 0.2 1.4 1 1 0 1 1 1 1 BED zinc finger zf-C2H2 PF00096.26 gi|327311984|ref|YP_004338881.1| - 0.021 15.3 0.2 0.034 14.6 0.2 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_3rep PF18868.1 gi|327311984|ref|YP_004338881.1| - 0.044 14.5 0.0 0.047 14.4 0.0 1.1 1 0 0 1 1 1 0 Zinc finger C2H2-type, 3 repeats ROS_MUCR PF05443.11 gi|327311984|ref|YP_004338881.1| - 0.049 13.7 0.0 0.049 13.7 0.0 1.1 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein zf-C2H2_11 PF16622.5 gi|327311984|ref|YP_004338881.1| - 0.19 11.5 2.0 0.37 10.6 0.5 2.0 2 0 0 2 2 2 0 zinc-finger C2H2-type HEPN PF05168.14 gi|327311985|ref|YP_004338882.1| - 2.7e-07 30.7 0.1 2.8e-06 27.5 0.1 2.0 1 1 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|327311985|ref|YP_004338882.1| - 0.0081 16.1 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN_AbiV PF18728.1 gi|327311985|ref|YP_004338882.1| - 0.028 14.6 0.0 0.085 13.0 0.0 1.7 2 0 0 2 2 2 0 AbiV UDG PF03167.19 gi|327311986|ref|YP_004338883.1| - 1.1e-39 135.9 0.0 1.3e-39 135.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribosomal_L27A PF00828.19 gi|327311987|ref|YP_004338884.1| - 3e-19 70.0 0.6 3.7e-19 69.7 0.2 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|327311988|ref|YP_004338885.1| - 7.8e-47 160.0 18.8 1.1e-46 159.5 18.8 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|327311988|ref|YP_004338885.1| - 0.011 15.6 0.0 0.036 13.9 0.0 2.0 1 0 0 1 1 1 0 Plug domain of Sec61p DUF4164 PF13747.6 gi|327311989|ref|YP_004338886.1| - 0.0027 17.9 0.4 1.3 9.3 0.0 2.0 2 0 0 2 2 2 2 Domain of unknown function (DUF4164) DUF4088 PF13317.6 gi|327311989|ref|YP_004338886.1| - 0.0077 15.8 0.0 0.0077 15.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4088) Exonuc_VII_S PF02609.16 gi|327311989|ref|YP_004338886.1| - 0.018 15.1 3.8 0.27 11.3 1.7 2.2 2 0 0 2 2 2 0 Exonuclease VII small subunit DUF892 PF05974.12 gi|327311989|ref|YP_004338886.1| - 0.047 13.7 0.1 0.05 13.6 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF892) HSBP1 PF06825.12 gi|327311989|ref|YP_004338886.1| - 0.1 12.5 1.3 3.3 7.6 0.5 2.2 2 0 0 2 2 2 0 Heat shock factor binding protein 1 DUF1657 PF07870.11 gi|327311989|ref|YP_004338886.1| - 0.15 12.0 0.3 9.7 6.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1657) Fzo_mitofusin PF04799.13 gi|327311989|ref|YP_004338886.1| - 0.18 11.3 0.0 0.18 11.3 0.0 1.0 1 0 0 1 1 1 0 fzo-like conserved region Methyltrn_RNA_3 PF02598.17 gi|327311990|ref|YP_004338887.1| - 5e-45 154.2 0.0 5.8e-45 154.0 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase VKOR PF07884.14 gi|327311993|ref|YP_004338890.1| - 3.6e-20 72.4 13.8 5.4e-20 71.8 13.7 1.3 1 1 0 1 1 1 1 Vitamin K epoxide reductase family Hexapep PF00132.24 gi|327311994|ref|YP_004338891.1| - 0.15 11.9 0.4 4.1 7.3 0.0 3.1 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) DEAD PF00270.29 gi|327311995|ref|YP_004338892.1| - 1.9e-33 115.7 0.0 7.3e-33 113.8 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|327311995|ref|YP_004338892.1| - 9.4e-31 107.1 0.1 2.4e-30 105.7 0.1 1.8 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|327311995|ref|YP_004338892.1| - 4.7e-17 62.3 0.0 2.7e-16 59.9 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|327311995|ref|YP_004338892.1| - 1.6e-08 34.8 0.0 3e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|327311995|ref|YP_004338892.1| - 0.0089 16.4 0.0 0.032 14.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327311995|ref|YP_004338892.1| - 0.034 14.4 1.6 49 4.2 0.0 4.3 4 0 0 4 4 4 0 AAA domain AAA_25 PF13481.6 gi|327311995|ref|YP_004338892.1| - 0.051 13.1 1.7 0.15 11.6 0.1 2.6 3 1 0 3 3 3 0 AAA domain HypA PF01155.19 gi|327311995|ref|YP_004338892.1| - 0.08 13.0 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_11 PF13086.6 gi|327311995|ref|YP_004338892.1| - 0.11 12.2 0.0 3.5 7.4 0.0 2.5 1 1 1 2 2 2 0 AAA domain Zn-ribbon_8 PF09723.10 gi|327311995|ref|YP_004338892.1| - 0.12 12.5 0.1 0.27 11.4 0.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain GUB_WAK_bind PF13947.6 gi|327311996|ref|YP_004338893.1| - 0.16 12.8 0.3 1.3 9.8 0.3 2.1 1 1 0 1 1 1 0 Wall-associated receptor kinase galacturonan-binding CBS PF00571.28 gi|327311997|ref|YP_004338894.1| - 2.2e-47 159.3 10.3 9.9e-15 54.7 0.0 4.1 4 0 0 4 4 4 4 CBS domain PRC PF05239.16 gi|327311997|ref|YP_004338894.1| - 0.018 15.1 1.2 30 4.8 0.0 3.6 3 0 0 3 3 3 0 PRC-barrel domain DUF3659 PF12396.8 gi|327311997|ref|YP_004338894.1| - 0.023 14.6 0.7 39 4.2 0.1 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) sCache_3_2 PF17203.4 gi|327311997|ref|YP_004338894.1| - 0.064 13.4 1.0 56 3.9 0.2 3.5 2 1 0 3 3 3 0 Single cache domain 3 IF3_N PF05198.16 gi|327311997|ref|YP_004338894.1| - 0.12 12.7 0.1 4.7 7.6 0.0 3.0 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain LuxQ-periplasm PF09308.10 gi|327311997|ref|YP_004338894.1| - 0.23 10.9 0.4 28 4.1 0.0 2.7 3 0 0 3 3 3 0 LuxQ, periplasmic Ham1p_like PF01725.16 gi|327311998|ref|YP_004338895.1| - 5.3e-50 169.9 0.0 6e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Synapsin PF02078.16 gi|327311998|ref|YP_004338895.1| - 0.048 14.0 0.0 0.082 13.2 0.0 1.3 1 0 0 1 1 1 0 Synapsin, N-terminal domain Ribosomal_L6 PF00347.23 gi|327311999|ref|YP_004338896.1| - 2.7e-14 53.6 4.1 6.7e-08 33.1 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Thioredoxin PF00085.20 gi|327312000|ref|YP_004338897.1| - 3e-09 36.8 0.0 3.6e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|327312000|ref|YP_004338897.1| - 4.6e-05 23.8 0.9 0.00086 19.7 0.9 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|327312000|ref|YP_004338897.1| - 0.00077 19.5 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.20 gi|327312000|ref|YP_004338897.1| - 0.0015 18.4 1.0 0.51 10.1 0.1 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain TraF PF13728.6 gi|327312000|ref|YP_004338897.1| - 0.0025 17.7 0.1 0.004 17.0 0.1 1.4 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_4 PF13462.6 gi|327312000|ref|YP_004338897.1| - 0.02 15.1 0.6 2.3 8.4 0.2 2.1 1 1 1 2 2 2 0 Thioredoxin Glutaredoxin PF00462.24 gi|327312000|ref|YP_004338897.1| - 0.12 12.7 0.2 0.2 11.9 0.2 1.4 1 1 0 1 1 1 0 Glutaredoxin Pyr_redox_2 PF07992.14 gi|327312001|ref|YP_004338898.1| - 3.4e-66 223.5 4.2 4.4e-66 223.1 4.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|327312001|ref|YP_004338898.1| - 4.8e-26 91.1 8.5 3.4e-22 78.8 0.9 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|327312001|ref|YP_004338898.1| - 8.9e-17 61.3 0.9 2.7e-16 59.8 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|327312001|ref|YP_004338898.1| - 2e-16 60.1 0.6 3.5e-13 49.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|327312001|ref|YP_004338898.1| - 1e-11 45.1 12.7 0.00011 21.9 0.1 4.1 2 2 2 4 4 4 3 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|327312001|ref|YP_004338898.1| - 7.7e-08 31.4 9.5 0.041 12.6 0.0 4.2 3 1 1 4 4 4 3 HI0933-like protein NAD_binding_8 PF13450.6 gi|327312001|ref|YP_004338898.1| - 4e-07 30.2 3.0 0.003 17.7 0.3 3.3 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|327312001|ref|YP_004338898.1| - 1.9e-06 27.9 6.8 1.5 8.8 0.0 4.2 4 0 0 4 4 4 3 FAD-NAD(P)-binding GIDA PF01134.22 gi|327312001|ref|YP_004338898.1| - 2.7e-06 26.8 12.9 0.039 13.0 2.2 3.7 2 2 1 4 4 4 3 Glucose inhibited division protein A K_oxygenase PF13434.6 gi|327312001|ref|YP_004338898.1| - 2.1e-05 23.8 0.1 0.00072 18.8 0.0 2.3 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|327312001|ref|YP_004338898.1| - 9.1e-05 21.8 4.7 0.025 13.9 1.7 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|327312001|ref|YP_004338898.1| - 0.00051 19.4 0.6 0.0085 15.5 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|327312001|ref|YP_004338898.1| - 0.0011 18.4 0.8 0.018 14.4 0.0 2.5 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|327312001|ref|YP_004338898.1| - 0.0012 19.2 1.8 0.95 9.9 0.2 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|327312001|ref|YP_004338898.1| - 0.0021 17.5 13.6 0.42 9.9 3.1 4.0 4 0 0 4 4 4 2 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.22 gi|327312001|ref|YP_004338898.1| - 0.0057 17.5 0.2 2.7 8.8 0.0 2.4 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Lycopene_cycl PF05834.12 gi|327312001|ref|YP_004338898.1| - 0.012 14.7 0.8 0.012 14.7 0.8 2.7 3 0 0 3 3 3 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|327312001|ref|YP_004338898.1| - 0.023 14.6 0.1 0.023 14.6 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|327312001|ref|YP_004338898.1| - 0.025 14.8 0.7 3.8 7.8 0.0 3.2 2 1 0 2 2 2 0 TrkA-N domain Transketolase_C PF02780.20 gi|327312001|ref|YP_004338898.1| - 0.044 13.7 1.5 0.14 12.0 0.2 2.5 3 0 0 3 3 3 0 Transketolase, C-terminal domain FAD_binding_3 PF01494.19 gi|327312001|ref|YP_004338898.1| - 0.06 12.6 5.7 2.2 7.4 0.9 2.8 2 1 1 3 3 3 0 FAD binding domain F420_oxidored PF03807.17 gi|327312001|ref|YP_004338898.1| - 0.092 13.3 3.7 2.7 8.6 0.0 2.9 3 0 0 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent Trp_halogenase PF04820.14 gi|327312001|ref|YP_004338898.1| - 0.66 8.8 9.9 0.06 12.2 0.4 3.2 4 0 0 4 4 4 0 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|327312001|ref|YP_004338898.1| - 1.5 7.8 14.6 0.11 11.6 3.6 3.4 2 2 1 4 4 4 0 FAD binding domain Ldh_1_N PF00056.23 gi|327312002|ref|YP_004338899.1| - 3.1e-39 134.3 0.2 4.3e-39 133.8 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|327312002|ref|YP_004338899.1| - 1.3e-15 57.7 0.0 2.8e-15 56.7 0.0 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|327312002|ref|YP_004338899.1| - 0.0003 20.4 0.0 0.00066 19.3 0.0 1.5 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|327312002|ref|YP_004338899.1| - 0.011 15.3 1.4 0.02 14.5 1.4 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Peptidase_S49_N PF08496.10 gi|327312003|ref|YP_004338900.1| - 0.14 12.2 4.4 0.17 12.0 4.4 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Thioredoxin_3 PF13192.6 gi|327312004|ref|YP_004338901.1| - 4.7e-15 55.4 0.1 2.7e-10 40.2 0.1 2.4 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|327312004|ref|YP_004338901.1| - 1.4e-08 34.6 0.0 1.8e-06 27.9 0.0 2.4 2 1 0 2 2 2 1 Thioredoxin TraF PF13728.6 gi|327312004|ref|YP_004338901.1| - 2.6e-05 24.2 0.0 0.00012 22.0 0.0 1.9 2 0 0 2 2 2 1 F plasmid transfer operon protein Glutaredoxin PF00462.24 gi|327312004|ref|YP_004338901.1| - 0.0021 18.2 1.6 0.26 11.5 0.1 3.1 4 0 0 4 4 4 1 Glutaredoxin Thioredoxin_2 PF13098.6 gi|327312004|ref|YP_004338901.1| - 0.0057 17.1 2.0 0.016 15.6 0.3 2.5 2 2 0 2 2 2 1 Thioredoxin-like domain HyaE PF07449.11 gi|327312004|ref|YP_004338901.1| - 0.085 12.8 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE ABC_transp_aux PF09822.9 gi|327312004|ref|YP_004338901.1| - 0.09 12.2 0.0 0.38 10.2 0.0 1.8 1 1 1 2 2 2 0 ABC-type uncharacterized transport system DSBA PF01323.20 gi|327312004|ref|YP_004338901.1| - 0.12 12.1 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 DSBA-like thioredoxin domain DsbD PF02683.15 gi|327312005|ref|YP_004338902.1| - 5.7e-14 52.5 19.0 7.5e-13 48.9 18.6 2.2 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|327312005|ref|YP_004338902.1| - 1e-06 28.8 17.8 1e-06 28.8 17.8 2.6 2 1 1 3 3 3 2 Cytochrome C biogenesis protein transmembrane region Thioredoxin_7 PF13899.6 gi|327312005|ref|YP_004338902.1| - 0.0035 17.5 0.0 0.0058 16.8 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|327312005|ref|YP_004338902.1| - 0.013 15.9 0.0 0.035 14.6 0.1 1.8 2 1 0 2 2 2 0 Thioredoxin-like domain Polbeta PF18765.1 gi|327312006|ref|YP_004338903.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase RHH_6 PF16762.5 gi|327312007|ref|YP_004338904.1| - 0.066 13.8 0.0 0.092 13.4 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix domain PIN PF01850.21 gi|327312008|ref|YP_004338905.1| - 2.9e-13 50.4 0.4 3.3e-13 50.2 0.4 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|327312008|ref|YP_004338905.1| - 0.048 13.4 0.1 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) AAA_3 PF07726.11 gi|327312011|ref|YP_004338908.1| - 1.3e-65 219.2 0.0 2.3e-65 218.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|327312011|ref|YP_004338908.1| - 4e-19 68.2 2.4 6.6e-19 67.5 1.6 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|327312011|ref|YP_004338908.1| - 6.4e-11 42.4 0.0 1.5e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|327312011|ref|YP_004338908.1| - 1.6e-05 25.4 0.0 4.5e-05 23.9 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|327312011|ref|YP_004338908.1| - 2.9e-05 23.9 0.0 0.018 14.8 0.0 2.1 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|327312011|ref|YP_004338908.1| - 0.0003 20.6 0.0 0.0054 16.5 0.0 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|327312011|ref|YP_004338908.1| - 0.0025 17.2 0.2 0.13 11.6 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|327312011|ref|YP_004338908.1| - 0.086 11.9 0.0 0.21 10.6 0.0 1.7 1 1 0 1 1 1 0 MCM P-loop domain MCM_lid PF17855.1 gi|327312011|ref|YP_004338908.1| - 0.15 12.5 0.5 0.83 10.1 0.1 2.1 2 0 0 2 2 2 0 MCM AAA-lid domain DUF58 PF01882.18 gi|327312012|ref|YP_004338909.1| - 4.9e-20 71.6 0.0 1.1e-19 70.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 HEPN_Toprim_N PF18871.1 gi|327312013|ref|YP_004338910.1| - 0.1 12.5 0.2 0.14 12.0 0.2 1.1 1 0 0 1 1 1 0 HEPN/Toprim N-terminal domain 1 ExoD PF06055.12 gi|327312013|ref|YP_004338910.1| - 0.14 11.5 15.2 0.03 13.7 5.9 2.2 2 0 0 2 2 2 0 Exopolysaccharide synthesis, ExoD Tox-WTIP PF15654.6 gi|327312013|ref|YP_004338910.1| - 0.18 12.2 0.6 0.29 11.6 0.6 1.3 1 0 0 1 1 1 0 Toxin with a conserved tryptophan and TIP tripeptide motif zinc_ribbon_4 PF13717.6 gi|327312014|ref|YP_004338911.1| - 0.12 12.3 1.0 1.7 8.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|327312014|ref|YP_004338911.1| - 0.19 11.5 2.9 1 9.1 0.4 2.2 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HpcH_HpaI PF03328.14 gi|327312015|ref|YP_004338912.1| - 1.9e-34 118.8 0.2 5.8e-33 113.9 0.2 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|327312015|ref|YP_004338912.1| - 2.5e-14 53.2 0.0 4e-09 36.1 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold CoA_transf_3 PF02515.17 gi|327312016|ref|YP_004338913.1| - 2.9e-82 276.7 0.0 3.4e-82 276.5 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III AMP-binding PF00501.28 gi|327312017|ref|YP_004338914.1| - 6.5e-86 288.5 0.0 7.6e-86 288.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|327312017|ref|YP_004338914.1| - 8.2e-26 90.8 1.2 2.6e-25 89.2 1.2 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.16 gi|327312018|ref|YP_004338915.1| - 1.3e-25 90.1 63.5 3.1e-17 62.6 39.8 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|327312018|ref|YP_004338915.1| - 5.6e-18 65.0 30.8 4.4e-14 52.2 11.4 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter Methyltransf_11 PF08241.12 gi|327312019|ref|YP_004338916.1| - 2.5e-11 44.1 0.0 5.6e-11 42.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|327312019|ref|YP_004338916.1| - 8.3e-09 36.0 0.0 3.2e-08 34.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|327312019|ref|YP_004338916.1| - 2.8e-06 27.3 0.0 3.5e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|327312019|ref|YP_004338916.1| - 0.043 14.6 0.0 0.24 12.1 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Radical_SAM_C PF16199.5 gi|327312020|ref|YP_004338917.1| - 5.9e-25 87.1 0.1 1e-24 86.3 0.1 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|327312020|ref|YP_004338917.1| - 1.9e-21 77.1 0.0 4.4e-21 76.0 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_10 PF13673.7 gi|327312020|ref|YP_004338917.1| - 4.3e-06 26.7 0.0 8.2e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|327312020|ref|YP_004338917.1| - 3.2e-05 24.1 0.1 7.1e-05 23.0 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|327312020|ref|YP_004338917.1| - 0.06 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain UPF0051 PF01458.17 gi|327312022|ref|YP_004338919.1| - 4.3e-23 82.1 0.0 6.5e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) NUDIX PF00293.28 gi|327312023|ref|YP_004338920.1| - 4.1e-19 68.9 0.2 4.6e-19 68.7 0.2 1.0 1 0 0 1 1 1 1 NUDIX domain DBC1 PF14443.6 gi|327312023|ref|YP_004338920.1| - 0.016 15.2 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 DBC1 Bacteriocin_IIi PF11758.8 gi|327312023|ref|YP_004338920.1| - 0.026 14.3 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Aureocin-like type II bacteriocin Hemerythrin PF01814.23 gi|327312024|ref|YP_004338921.1| - 2.9e-05 24.7 4.5 0.0005 20.7 3.9 2.0 1 1 1 2 2 2 2 Hemerythrin HHE cation binding domain PG_binding_2 PF08823.11 gi|327312025|ref|YP_004338922.1| - 0.021 15.1 0.1 0.053 13.8 0.0 1.7 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Glyco_hydro_57 PF03065.15 gi|327312026|ref|YP_004338923.1| - 1.2e-61 208.8 0.0 1.6e-61 208.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|327312026|ref|YP_004338923.1| - 0.00016 21.6 0.0 0.00033 20.5 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase VAPB_antitox PF02697.14 gi|327312027|ref|YP_004338924.1| - 0.00013 22.7 1.2 0.00016 22.3 1.2 1.2 1 0 0 1 1 1 1 Putative antitoxin PP2C_C PF07830.13 gi|327312027|ref|YP_004338924.1| - 0.011 16.2 0.9 0.013 15.9 0.9 1.2 1 0 0 1 1 1 0 Protein serine/threonine phosphatase 2C, C-terminal domain GED PF02212.18 gi|327312027|ref|YP_004338924.1| - 0.14 12.3 2.2 0.19 11.9 2.2 1.1 1 0 0 1 1 1 0 Dynamin GTPase effector domain PIN PF01850.21 gi|327312028|ref|YP_004338925.1| - 2e-07 31.5 0.2 3.2e-07 30.9 0.2 1.3 1 0 0 1 1 1 1 PIN domain Phosphorylase PF00343.20 gi|327312029|ref|YP_004338926.1| - 6.6e-11 41.2 0.0 1.2e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|327312029|ref|YP_004338926.1| - 3.4e-09 36.5 0.0 5.5e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327312029|ref|YP_004338926.1| - 4e-05 24.1 0.0 0.00026 21.4 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 GA-like PF17573.2 gi|327312029|ref|YP_004338926.1| - 0.11 12.5 1.7 0.3 11.0 1.7 1.8 1 0 0 1 1 1 0 GA-like domain AFOR_C PF01314.18 gi|327312030|ref|YP_004338927.1| - 2.6e-117 392.1 0.0 3.2e-117 391.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|327312030|ref|YP_004338927.1| - 7.2e-77 257.7 0.4 1.1e-76 257.1 0.4 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Lactamase_B_3 PF13483.6 gi|327312031|ref|YP_004338928.1| - 1.2e-07 31.8 0.0 3.1e-07 30.4 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|327312031|ref|YP_004338928.1| - 2.1e-06 27.4 0.1 4.9e-06 26.2 0.1 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|327312031|ref|YP_004338928.1| - 7.8e-06 26.0 9.4 0.002 18.1 9.3 3.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|327312031|ref|YP_004338928.1| - 0.16 11.4 0.0 0.8 9.1 0.0 1.8 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain Isochorismatase PF00857.20 gi|327312032|ref|YP_004338929.1| - 1.8e-41 142.2 0.0 2.3e-41 141.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family HAD_2 PF13419.6 gi|327312033|ref|YP_004338930.1| - 3e-09 37.2 0.0 4.8e-09 36.5 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|327312033|ref|YP_004338930.1| - 1.8e-08 34.9 0.0 5.5e-07 30.1 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|327312033|ref|YP_004338930.1| - 0.035 14.2 0.0 0.062 13.4 0.0 1.5 1 1 0 1 1 1 0 HAD-hyrolase-like Flavodoxin_1 PF00258.25 gi|327312034|ref|YP_004338931.1| - 8.6e-12 45.5 0.0 5.7e-11 42.8 0.0 2.1 1 1 0 1 1 1 1 Flavodoxin Lactamase_B PF00753.27 gi|327312034|ref|YP_004338931.1| - 4.7e-09 36.5 2.7 9.3e-09 35.6 2.7 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FMN_red PF03358.15 gi|327312034|ref|YP_004338931.1| - 3.9e-07 29.9 0.1 1.4e-05 24.8 0.1 2.4 1 1 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.7 gi|327312034|ref|YP_004338931.1| - 7.6e-05 23.0 0.0 0.00015 22.0 0.0 1.5 1 0 0 1 1 1 1 Flavodoxin domain LytR_C PF13399.6 gi|327312034|ref|YP_004338931.1| - 0.024 15.6 0.0 1.2 10.2 0.0 2.4 2 0 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Transketolase_C PF02780.20 gi|327312034|ref|YP_004338931.1| - 0.12 12.2 0.0 0.77 9.6 0.0 2.2 2 1 0 2 2 2 0 Transketolase, C-terminal domain CN_hydrolase PF00795.22 gi|327312035|ref|YP_004338932.1| - 1.1e-17 64.2 0.1 3.2e-17 62.7 0.1 1.7 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase ELFV_dehydrog PF00208.21 gi|327312036|ref|YP_004338933.1| - 3.6e-66 223.3 0.4 4.6e-66 223.0 0.4 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|327312036|ref|YP_004338933.1| - 6.6e-49 165.1 0.0 1.2e-48 164.3 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|327312036|ref|YP_004338933.1| - 0.0022 17.4 0.1 0.0043 16.4 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|327312036|ref|YP_004338933.1| - 0.051 13.6 0.1 0.096 12.7 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Dimerisation PF08100.11 gi|327312036|ref|YP_004338933.1| - 0.073 13.1 0.0 0.59 10.2 0.0 2.4 2 0 0 2 2 2 0 Dimerisation domain Gp_dh_N PF00044.24 gi|327312036|ref|YP_004338933.1| - 0.16 12.3 0.1 0.39 11.1 0.1 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MFS_1 PF07690.16 gi|327312037|ref|YP_004338934.1| - 1.2e-40 139.6 56.0 7.4e-29 100.8 28.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|327312037|ref|YP_004338934.1| - 5.4e-37 127.7 17.9 5.1e-36 124.5 17.9 1.9 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|327312037|ref|YP_004338934.1| - 5.4e-06 25.9 31.8 3.3e-05 23.4 31.8 2.0 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|327312037|ref|YP_004338934.1| - 0.75 8.6 16.9 0.66 8.8 4.9 2.9 2 2 2 4 4 4 0 MFS_1 like family DUF2085 PF09858.9 gi|327312037|ref|YP_004338934.1| - 7.7 7.1 7.3 2.4 8.7 1.1 3.1 3 0 0 3 3 3 0 Predicted membrane protein (DUF2085) Sugar_tr PF00083.24 gi|327312038|ref|YP_004338935.1| - 3.3e-29 102.1 36.1 1.6e-19 70.2 10.5 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|327312038|ref|YP_004338935.1| - 3.2e-21 75.7 69.6 5.4e-14 51.9 35.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily NDK PF00334.19 gi|327312040|ref|YP_004338937.1| - 2.5e-44 150.6 0.0 8.1e-25 87.4 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Shufflon_N PF04917.12 gi|327312040|ref|YP_004338937.1| - 0.025 14.0 0.0 0.037 13.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial shufflon protein, N-terminal constant region Arm-DNA-bind_3 PF13356.6 gi|327312040|ref|YP_004338937.1| - 0.16 12.4 0.0 1.5 9.2 0.0 2.2 2 1 0 2 2 2 0 Arm DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|327312041|ref|YP_004338938.1| - 2.6e-06 26.8 0.9 5e-06 25.9 0.4 1.7 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|327312041|ref|YP_004338938.1| - 8.8e-05 22.1 2.7 0.00022 20.8 2.7 1.7 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|327312041|ref|YP_004338938.1| - 0.0001 21.6 3.4 0.00084 18.7 3.8 2.0 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|327312041|ref|YP_004338938.1| - 0.0034 17.3 0.8 0.019 14.9 0.8 2.1 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|327312041|ref|YP_004338938.1| - 0.02 14.9 0.4 0.036 14.1 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-Di19 PF05605.12 gi|327312041|ref|YP_004338938.1| - 0.027 14.7 1.6 4.6 7.6 0.3 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-CHCC PF10276.9 gi|327312041|ref|YP_004338938.1| - 0.051 13.6 6.3 1.4 9.0 0.7 2.3 2 0 0 2 2 2 0 Zinc-finger domain Prok-RING_1 PF14446.6 gi|327312041|ref|YP_004338938.1| - 0.062 13.2 0.2 0.11 12.4 0.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|327312041|ref|YP_004338938.1| - 0.071 13.1 0.3 0.11 12.5 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PhnA_Zn_Ribbon PF08274.12 gi|327312041|ref|YP_004338938.1| - 0.12 12.3 2.3 0.24 11.4 2.3 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zf-BED PF02892.15 gi|327312041|ref|YP_004338938.1| - 0.13 12.4 0.4 16 5.6 0.0 2.4 1 1 1 2 2 2 0 BED zinc finger zf-HYPF PF07503.12 gi|327312041|ref|YP_004338938.1| - 0.14 11.9 2.8 0.3 10.9 2.8 1.6 1 0 0 1 1 1 0 HypF finger Ribosomal_S27e PF01667.17 gi|327312041|ref|YP_004338938.1| - 0.16 11.7 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Cys_rich_CPXG PF14255.6 gi|327312041|ref|YP_004338938.1| - 0.27 11.2 5.8 3.6 7.6 0.6 3.0 3 0 0 3 3 3 0 Cysteine-rich CPXCG zf-C2H2_4 PF13894.6 gi|327312041|ref|YP_004338938.1| - 0.3 12.0 0.7 35 5.6 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger PyrI_C PF02748.15 gi|327312041|ref|YP_004338938.1| - 0.31 11.0 2.4 10 6.1 0.0 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-RING_7 PF02591.15 gi|327312041|ref|YP_004338938.1| - 0.32 11.2 2.3 8.1 6.7 0.3 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain UPF0547 PF10571.9 gi|327312041|ref|YP_004338938.1| - 0.34 11.0 3.2 5.6 7.2 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|327312041|ref|YP_004338938.1| - 2.8 8.0 5.2 24 5.0 0.6 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain p12I PF12233.8 gi|327312041|ref|YP_004338938.1| - 4.9 7.7 6.9 10 6.7 2.6 2.4 1 1 1 2 2 2 0 Human adult T cell leukemia/lymphoma virus protein zf-ribbon_3 PF13248.6 gi|327312042|ref|YP_004338939.1| - 0.013 14.9 2.6 0.038 13.4 2.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|327312042|ref|YP_004338939.1| - 0.034 14.2 0.3 0.058 13.4 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon Cys_rich_CPXG PF14255.6 gi|327312042|ref|YP_004338939.1| - 0.06 13.3 0.8 11 6.0 0.1 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG TF_Zn_Ribbon PF08271.12 gi|327312042|ref|YP_004338939.1| - 0.083 12.4 0.9 5.7 6.5 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|327312042|ref|YP_004338939.1| - 0.11 12.2 4.4 1.3 8.8 0.5 2.2 1 1 1 2 2 2 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|327312042|ref|YP_004338939.1| - 0.12 12.1 0.4 0.5 10.1 0.5 1.8 1 1 1 2 2 2 0 A2L zinc ribbon domain Prok-RING_1 PF14446.6 gi|327312042|ref|YP_004338939.1| - 0.17 11.8 0.5 0.27 11.2 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 PyrI_C PF02748.15 gi|327312042|ref|YP_004338939.1| - 0.34 10.8 2.1 13 5.8 0.1 2.3 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-CHCC PF10276.9 gi|327312042|ref|YP_004338939.1| - 0.44 10.6 2.9 5.1 7.2 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger domain Proton_antipo_M PF00361.20 gi|327312043|ref|YP_004338940.1| - 6.5e-13 48.5 33.7 5.9e-12 45.4 27.1 3.6 1 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|327312044|ref|YP_004338941.1| - 7.2e-41 140.3 32.5 1.9e-39 135.6 24.1 3.0 3 0 0 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|327312044|ref|YP_004338941.1| - 2.9e-07 30.5 5.3 1.1e-06 28.6 4.1 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2615 PF11027.8 gi|327312044|ref|YP_004338941.1| - 0.41 10.8 0.8 39 4.4 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2615) Proton_antipo_M PF00361.20 gi|327312045|ref|YP_004338942.1| - 5.8e-44 150.5 30.4 5.8e-44 150.5 30.4 2.9 2 1 1 3 3 3 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|327312045|ref|YP_004338942.1| - 0.00013 22.0 0.3 0.00013 22.0 0.3 2.9 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|327312046|ref|YP_004338943.1| - 7.4e-09 35.2 9.0 1.7e-08 34.0 9.0 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BCLP PF12304.8 gi|327312046|ref|YP_004338943.1| - 0.0034 16.9 6.6 0.0039 16.8 6.6 1.1 1 0 0 1 1 1 1 Beta-casein like protein Chordopox_A13L PF05961.11 gi|327312046|ref|YP_004338943.1| - 1.4 9.2 0.0 1.4 9.2 0.0 2.6 3 0 0 3 3 3 0 Chordopoxvirus A13L protein BphX PF06139.12 gi|327312046|ref|YP_004338943.1| - 4.5 7.2 11.5 7.6 6.5 11.5 1.4 1 1 0 1 1 1 0 BphX-like DUF4418 PF14387.6 gi|327312046|ref|YP_004338943.1| - 7.6 6.8 9.8 14 5.9 9.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) Oxidored_q3 PF00499.20 gi|327312047|ref|YP_004338944.1| - 2e-06 27.6 16.5 2e-06 27.6 16.5 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CTP_transf_1 PF01148.20 gi|327312047|ref|YP_004338944.1| - 0.0033 17.2 3.6 0.0033 17.2 3.6 1.7 1 1 1 2 2 2 1 Cytidylyltransferase family Imp-YgjV PF10688.9 gi|327312047|ref|YP_004338944.1| - 0.56 10.0 13.5 0.87 9.4 13.5 1.5 1 1 0 1 1 1 0 Bacterial inner membrane protein RAMP4 PF06624.12 gi|327312047|ref|YP_004338944.1| - 0.71 10.0 4.0 1.3 9.2 4.0 1.4 1 0 0 1 1 1 0 Ribosome associated membrane protein RAMP4 DUF4234 PF14018.6 gi|327312047|ref|YP_004338944.1| - 2.6 8.2 5.9 0.41 10.8 0.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4234) PaREP1 PF05942.11 gi|327312048|ref|YP_004338945.1| - 1e-30 106.0 1.6 1e-30 106.0 1.6 1.9 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Fer4 PF00037.27 gi|327312049|ref|YP_004338946.1| - 1.4e-14 53.2 11.6 2.8e-07 30.1 1.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|327312049|ref|YP_004338946.1| - 3.1e-11 43.7 22.7 1.1e-08 35.6 12.2 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|327312049|ref|YP_004338946.1| - 7.9e-11 42.7 4.6 6.5e-05 23.8 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|327312049|ref|YP_004338946.1| - 2.6e-09 37.1 20.4 3.9e-07 30.1 10.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|327312049|ref|YP_004338946.1| - 2.9e-09 36.6 14.4 7.5e-05 22.6 4.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|327312049|ref|YP_004338946.1| - 1.9e-08 34.3 20.4 6.3e-06 26.2 12.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|327312049|ref|YP_004338946.1| - 9.7e-08 32.0 5.2 0.00036 20.6 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|327312049|ref|YP_004338946.1| - 1.2e-07 32.1 3.8 0.0012 19.4 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|327312049|ref|YP_004338946.1| - 2.8e-07 30.9 2.1 0.0075 16.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|327312049|ref|YP_004338946.1| - 2.4e-06 27.3 16.4 0.00051 20.0 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|327312049|ref|YP_004338946.1| - 2.5e-05 24.5 12.2 0.015 15.8 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|327312049|ref|YP_004338946.1| - 0.0032 18.0 10.9 0.25 11.9 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|327312049|ref|YP_004338946.1| - 0.0037 18.1 15.8 0.086 13.8 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|327312049|ref|YP_004338946.1| - 0.0098 15.7 4.9 0.52 10.1 0.1 2.2 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|327312049|ref|YP_004338946.1| - 0.012 16.3 6.1 0.54 11.0 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|327312049|ref|YP_004338946.1| - 0.02 15.1 10.3 0.073 13.3 0.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain PCMD PF13201.6 gi|327312049|ref|YP_004338946.1| - 0.24 11.2 0.0 0.33 10.7 0.0 1.2 1 0 0 1 1 1 0 Putative carbohydrate metabolism domain NADHdh PF00146.21 gi|327312050|ref|YP_004338947.1| - 3.3e-64 217.0 26.9 4.1e-64 216.8 26.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|327312051|ref|YP_004338948.1| - 7.3e-71 238.4 0.0 9.1e-71 238.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DUF4716 PF15837.5 gi|327312051|ref|YP_004338948.1| - 0.1 12.7 0.1 0.22 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4716) AAA_assoc_C PF09821.9 gi|327312052|ref|YP_004338949.1| - 2.6e-07 31.2 1.0 3.1e-07 31.0 0.2 1.5 2 0 0 2 2 2 1 C-terminal AAA-associated domain HTH_45 PF14947.6 gi|327312052|ref|YP_004338949.1| - 0.052 13.5 0.0 0.059 13.4 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix FeoC PF09012.10 gi|327312052|ref|YP_004338949.1| - 0.14 12.2 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator ATPase_2 PF01637.18 gi|327312054|ref|YP_004338951.1| - 2e-14 54.1 0.0 7.9e-14 52.1 0.0 2.0 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|327312054|ref|YP_004338951.1| - 1.3e-10 41.4 0.0 7.2e-10 39.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|327312054|ref|YP_004338951.1| - 4e-06 27.2 0.0 1.6e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|327312054|ref|YP_004338951.1| - 9.4e-05 22.9 0.6 0.0007 20.0 0.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|327312054|ref|YP_004338951.1| - 0.00082 19.8 0.0 0.0016 18.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TPD52 PF04201.15 gi|327312054|ref|YP_004338951.1| - 0.045 13.4 0.1 0.077 12.6 0.1 1.3 1 0 0 1 1 1 0 Tumour protein D52 family DUF1383 PF07134.11 gi|327312054|ref|YP_004338951.1| - 0.21 10.7 0.0 0.37 9.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1383) MJ1316 PF04457.12 gi|327312055|ref|YP_004338952.1| - 1.6e-08 35.2 0.0 1.8e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Macro PF01661.21 gi|327312056|ref|YP_004338953.1| - 9.2e-36 122.5 0.1 1.3e-35 122.0 0.1 1.2 1 0 0 1 1 1 1 Macro domain Sel_put PF04328.13 gi|327312056|ref|YP_004338953.1| - 0.095 12.7 0.1 0.22 11.6 0.1 1.6 1 0 0 1 1 1 0 Selenoprotein, putative PDDEXK_10 PF07788.11 gi|327312057|ref|YP_004338954.1| - 2.7e-31 107.3 0.8 1e-30 105.5 0.8 2.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|327312057|ref|YP_004338954.1| - 1.2e-23 83.0 1.1 1.2e-23 83.0 1.1 3.6 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) DUF2345 PF10106.9 gi|327312057|ref|YP_004338954.1| - 0.0011 18.9 0.1 0.0019 18.1 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2345) ScsC_N PF18312.1 gi|327312057|ref|YP_004338954.1| - 0.0054 16.5 0.9 0.0054 16.5 0.9 3.3 4 0 0 4 4 4 1 Copper resistance protein ScsC N-terminal domain Matrilin_ccoil PF10393.9 gi|327312057|ref|YP_004338954.1| - 0.0066 16.3 6.8 0.2 11.5 0.9 2.8 1 1 1 2 2 2 2 Trimeric coiled-coil oligomerisation domain of matrilin TusA PF01206.17 gi|327312057|ref|YP_004338954.1| - 0.019 14.8 4.1 1 9.3 1.0 4.1 3 1 1 4 4 3 0 Sulfurtransferase TusA DUF2730 PF10805.8 gi|327312057|ref|YP_004338954.1| - 0.042 13.9 11.1 1.1 9.4 5.4 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) MutS_III PF05192.18 gi|327312057|ref|YP_004338954.1| - 0.05 13.8 1.0 0.068 13.4 1.0 1.3 1 0 0 1 1 1 0 MutS domain III DUF3685 PF12452.8 gi|327312057|ref|YP_004338954.1| - 0.073 12.8 5.1 0.79 9.4 0.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3685) LemA PF04011.12 gi|327312057|ref|YP_004338954.1| - 0.6 10.0 8.1 0.15 12.0 2.1 2.1 2 0 0 2 2 2 0 LemA family DUF3209 PF11483.8 gi|327312057|ref|YP_004338954.1| - 1 9.8 8.3 0.94 9.9 4.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3209) DrrA_P4M PF14860.6 gi|327312057|ref|YP_004338954.1| - 1 9.2 11.8 2.8 7.8 2.4 3.3 1 1 3 4 4 4 0 DrrA phosphatidylinositol 4-phosphate binding domain EFhand_Ca_insen PF08726.10 gi|327312057|ref|YP_004338954.1| - 1.4 9.1 9.0 22 5.2 0.5 3.9 1 1 2 3 3 3 0 Ca2+ insensitive EF hand Clr5 PF14420.6 gi|327312057|ref|YP_004338954.1| - 2 8.7 7.5 28 5.0 0.7 3.3 1 1 1 2 2 2 0 Clr5 domain CpxA_peri PF16527.5 gi|327312057|ref|YP_004338954.1| - 2.2 8.7 9.7 0.67 10.3 4.8 2.1 1 1 1 2 2 2 0 Two-component sensor protein CpxA, periplasmic domain DUF1664 PF07889.12 gi|327312057|ref|YP_004338954.1| - 2.3 8.3 8.2 3.6 7.7 5.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) YojJ PF10372.9 gi|327312057|ref|YP_004338954.1| - 3 8.0 6.9 5 7.3 2.0 3.4 3 1 1 4 4 4 0 Bacterial membrane-spanning protein N-terminus DUF1640 PF07798.11 gi|327312057|ref|YP_004338954.1| - 3.8 7.5 21.4 5.2 7.1 11.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) RIC3 PF15361.6 gi|327312057|ref|YP_004338954.1| - 8.1 6.8 8.3 18 5.7 8.3 1.6 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 TMPIT PF07851.13 gi|327312057|ref|YP_004338954.1| - 8.6 5.5 6.7 12 5.1 6.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein Sua5_yciO_yrdC PF01300.18 gi|327312058|ref|YP_004338955.1| - 4.6e-45 153.3 0.0 7.1e-45 152.7 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|327312058|ref|YP_004338955.1| - 7.7e-24 84.3 0.0 1.2e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|327312058|ref|YP_004338955.1| - 2.3e-22 78.4 7.8 2.3e-12 46.4 0.7 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|327312058|ref|YP_004338955.1| - 3.3e-17 62.7 0.3 1e-16 61.1 0.2 1.9 2 0 0 2 2 2 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|327312058|ref|YP_004338955.1| - 8.5e-06 25.7 0.2 0.0046 16.7 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family zf-C4_ClpX PF06689.13 gi|327312058|ref|YP_004338955.1| - 0.087 12.7 1.8 5.4 7.0 0.0 2.5 2 0 0 2 2 2 0 ClpX C4-type zinc finger NicO PF03824.16 gi|327312060|ref|YP_004338957.1| - 2.1e-91 306.2 13.3 3e-91 305.7 13.3 1.2 1 0 0 1 1 1 1 High-affinity nickel-transport protein HypD PF01924.16 gi|327312061|ref|YP_004338958.1| - 2.8e-117 391.7 0.0 3.5e-117 391.4 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HupF_HypC PF01455.18 gi|327312062|ref|YP_004338959.1| - 4.2e-08 33.2 0.2 4.2e-08 33.2 0.2 1.5 2 0 0 2 2 2 1 HupF/HypC family UPF0175 PF03683.13 gi|327312065|ref|YP_004338962.1| - 0.0046 16.6 0.1 0.009 15.7 0.1 1.6 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) QRPTase_C PF01729.19 gi|327312066|ref|YP_004338963.1| - 1.7e-21 76.7 0.1 1.9e-21 76.6 0.1 1.0 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain CutC PF03932.14 gi|327312066|ref|YP_004338963.1| - 0.024 14.1 0.1 0.035 13.6 0.1 1.3 1 1 0 1 1 1 0 CutC family TGT PF01702.18 gi|327312066|ref|YP_004338963.1| - 0.034 13.3 0.0 0.037 13.2 0.0 1.1 1 0 0 1 1 1 0 Queuine tRNA-ribosyltransferase TMP-TENI PF02581.17 gi|327312066|ref|YP_004338963.1| - 0.058 12.7 0.1 0.13 11.5 0.1 1.7 1 1 0 1 1 1 0 Thiamine monophosphate synthase PRAI PF00697.22 gi|327312066|ref|YP_004338963.1| - 0.073 12.8 0.0 0.085 12.6 0.0 1.2 1 0 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HEPN PF05168.14 gi|327312067|ref|YP_004338964.1| - 1.2e-10 41.6 0.0 1.2e-10 41.6 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|327312068|ref|YP_004338965.1| - 1.8e-07 31.4 0.1 2.7e-07 30.8 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|327312068|ref|YP_004338965.1| - 1.7e-06 28.0 0.0 2.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|327312068|ref|YP_004338965.1| - 0.053 13.3 0.0 0.067 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 CbiM PF01891.16 gi|327312069|ref|YP_004338966.1| - 4.3e-59 199.8 19.0 4.7e-59 199.7 19.0 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region stn_TNFRSF12A PF12191.8 gi|327312069|ref|YP_004338966.1| - 0.00073 19.8 3.0 0.0093 16.2 0.1 2.5 3 0 0 3 3 3 1 Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain Ldr_toxin PF13940.6 gi|327312069|ref|YP_004338966.1| - 0.078 13.0 0.1 0.078 13.0 0.1 3.0 4 0 0 4 4 4 0 Toxin Ldr, type I toxin-antitoxin system PDGLE PF13190.6 gi|327312070|ref|YP_004338967.1| - 1.4e-09 37.7 0.0 1.8e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 PDGLE domain DUF4014 PF13198.6 gi|327312070|ref|YP_004338967.1| - 0.066 13.6 1.5 0.089 13.2 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4014) CbiQ PF02361.16 gi|327312071|ref|YP_004338968.1| - 0.08 12.6 2.3 1.8 8.2 2.3 2.1 1 1 0 1 1 1 0 Cobalt transport protein ABC_tran PF00005.27 gi|327312072|ref|YP_004338969.1| - 1.3e-28 100.2 0.0 1.7e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|327312072|ref|YP_004338969.1| - 1.8e-15 57.6 0.9 7.1e-10 39.2 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|327312072|ref|YP_004338969.1| - 8e-08 32.0 0.0 1.2e-06 28.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|327312072|ref|YP_004338969.1| - 0.00047 19.8 0.0 0.0044 16.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|327312072|ref|YP_004338969.1| - 0.00063 20.2 0.0 0.00094 19.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|327312072|ref|YP_004338969.1| - 0.00079 19.7 0.1 0.0045 17.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|327312072|ref|YP_004338969.1| - 0.0012 18.6 0.0 0.004 16.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|327312072|ref|YP_004338969.1| - 0.0023 18.1 0.0 0.029 14.6 0.0 2.4 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|327312072|ref|YP_004338969.1| - 0.0035 17.3 0.0 0.0075 16.2 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|327312072|ref|YP_004338969.1| - 0.0061 16.6 0.0 0.051 13.6 0.0 2.0 1 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|327312072|ref|YP_004338969.1| - 0.0076 16.0 0.5 1.9 8.2 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_29 PF13555.6 gi|327312072|ref|YP_004338969.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain DEAD PF00270.29 gi|327312072|ref|YP_004338969.1| - 0.017 14.9 0.6 0.2 11.4 0.6 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|327312072|ref|YP_004338969.1| - 0.024 14.6 0.0 0.046 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|327312072|ref|YP_004338969.1| - 0.03 14.7 0.2 0.12 12.8 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|327312072|ref|YP_004338969.1| - 0.037 14.5 0.0 0.06 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|327312072|ref|YP_004338969.1| - 0.042 12.9 0.0 0.065 12.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|327312072|ref|YP_004338969.1| - 0.054 14.1 0.0 0.82 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|327312072|ref|YP_004338969.1| - 0.14 12.1 0.1 0.27 11.2 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|327312072|ref|YP_004338969.1| - 0.14 11.8 0.6 0.41 10.3 0.1 1.8 2 0 0 2 2 2 0 AAA domain PaREP1 PF05942.11 gi|327312073|ref|YP_004338970.1| - 3e-28 98.1 3.1 3.9e-28 97.7 3.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ssDBP_DBD PF18361.1 gi|327312073|ref|YP_004338970.1| - 0.0086 16.2 0.0 0.016 15.4 0.0 1.5 1 1 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain Gene66 PF02053.15 gi|327312073|ref|YP_004338970.1| - 0.043 13.5 0.1 0.074 12.7 0.1 1.3 1 0 0 1 1 1 0 Gene 66 (IR5) protein DUF1877 PF08974.10 gi|327312073|ref|YP_004338970.1| - 0.075 13.1 0.0 0.1 12.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1877) HycI PF01750.18 gi|327312076|ref|YP_004338973.1| - 1.8e-06 27.8 0.0 5.4e-06 26.3 0.0 1.6 1 1 1 2 2 2 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|327312077|ref|YP_004338974.1| - 2.2e-49 168.7 0.0 4.4e-28 98.5 0.0 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Ni_hydr_CYTB PF01292.20 gi|327312078|ref|YP_004338975.1| - 5.6e-05 22.8 42.4 0.0014 18.2 21.2 2.3 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|327312078|ref|YP_004338975.1| - 0.0003 21.3 4.5 0.0003 21.3 4.5 3.6 4 1 1 5 5 5 1 Domain of unknown function (DUF4405) DUF2107 PF09880.9 gi|327312078|ref|YP_004338975.1| - 0.058 13.5 0.4 0.24 11.5 0.4 2.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2107) NiFe_hyd_SSU_C PF14720.6 gi|327312079|ref|YP_004338976.1| - 4.9e-23 81.3 1.7 8.3e-23 80.6 1.7 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|327312079|ref|YP_004338976.1| - 6.6e-18 64.8 0.0 2e-17 63.3 0.0 1.9 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|327312079|ref|YP_004338976.1| - 0.00027 20.6 2.4 0.00027 20.6 2.4 3.9 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence HTH_24 PF13412.6 gi|327312080|ref|YP_004338977.1| - 0.0012 18.3 0.1 0.028 14.0 0.0 2.8 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|327312080|ref|YP_004338977.1| - 0.0029 17.4 0.2 0.0087 15.8 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|327312080|ref|YP_004338977.1| - 0.0054 16.6 0.1 0.026 14.4 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|327312080|ref|YP_004338977.1| - 0.0079 16.2 0.0 0.069 13.2 0.0 2.1 2 0 0 2 2 2 1 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|327312080|ref|YP_004338977.1| - 0.097 12.7 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|327312080|ref|YP_004338977.1| - 0.13 12.5 0.0 0.4 10.9 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF1815 PF08844.10 gi|327312080|ref|YP_004338977.1| - 0.15 12.0 0.2 15 5.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1815) Rrf2 PF02082.20 gi|327312080|ref|YP_004338977.1| - 0.15 12.4 0.0 13 6.2 0.0 2.2 1 1 1 2 2 2 0 Transcriptional regulator HycI PF01750.18 gi|327312081|ref|YP_004338978.1| - 0.011 15.5 0.0 0.087 12.7 0.0 1.9 1 1 0 1 1 1 0 Hydrogenase maturation protease NikR_C PF08753.11 gi|327312083|ref|YP_004338980.1| - 2.3e-24 85.4 1.8 3.5e-24 84.8 1.8 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain E3_UFM1_ligase PF09743.9 gi|327312083|ref|YP_004338980.1| - 0.016 14.8 0.2 0.038 13.6 0.0 1.6 2 0 0 2 2 2 0 E3 UFM1-protein ligase 1 HypA PF01155.19 gi|327312084|ref|YP_004338981.1| - 1e-20 73.8 0.0 1.1e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|327312084|ref|YP_004338981.1| - 0.0016 18.5 1.7 0.68 10.1 0.4 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Rubredoxin PF00301.20 gi|327312084|ref|YP_004338981.1| - 0.0056 16.7 0.8 0.52 10.4 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin Zn_ribbon_SprT PF17283.2 gi|327312084|ref|YP_004338981.1| - 0.0075 16.1 1.0 0.93 9.4 0.2 2.4 2 0 0 2 2 2 1 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|327312084|ref|YP_004338981.1| - 0.0095 15.9 0.8 2.1 8.4 0.0 2.3 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|327312084|ref|YP_004338981.1| - 0.0098 15.4 0.1 1.7 8.2 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|327312084|ref|YP_004338981.1| - 0.011 15.1 1.0 0.16 11.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|327312084|ref|YP_004338981.1| - 0.015 15.9 5.0 0.83 10.4 1.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Dof PF02701.15 gi|327312084|ref|YP_004338981.1| - 0.02 15.0 2.1 2.4 8.4 0.2 2.3 2 0 0 2 2 2 0 Dof domain, zinc finger RNA_POL_M_15KD PF02150.16 gi|327312084|ref|YP_004338981.1| - 0.023 14.6 1.3 0.31 11.0 0.3 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|327312084|ref|YP_004338981.1| - 0.046 13.7 0.2 15 5.6 0.1 2.8 3 0 0 3 3 3 0 Putative transposase DNA-binding domain TFIIS_C PF01096.18 gi|327312084|ref|YP_004338981.1| - 0.11 12.4 1.2 11 5.9 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF35_N PF12172.8 gi|327312084|ref|YP_004338981.1| - 0.11 12.4 6.4 0.88 9.5 0.2 3.2 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|327312084|ref|YP_004338981.1| - 0.11 12.4 2.7 1.6 8.7 0.6 2.4 2 0 0 2 2 2 0 Nudix N-terminal eIF-5_eIF-2B PF01873.17 gi|327312084|ref|YP_004338981.1| - 0.12 12.2 0.1 0.8 9.6 0.1 2.0 1 1 1 2 2 2 0 Domain found in IF2B/IF5 Zn_Tnp_IS1 PF03811.13 gi|327312084|ref|YP_004338981.1| - 0.17 11.7 6.1 2.2 8.1 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain DNA_RNApol_7kD PF03604.13 gi|327312084|ref|YP_004338981.1| - 0.18 11.5 3.9 7.4 6.3 0.3 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-H2C2_2 PF13465.6 gi|327312084|ref|YP_004338981.1| - 0.23 12.0 0.9 1.8 9.2 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.6 gi|327312084|ref|YP_004338981.1| - 0.3 10.9 2.3 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|327312084|ref|YP_004338981.1| - 0.41 10.4 10.2 0.53 10.1 2.4 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-IS66 PF13005.7 gi|327312084|ref|YP_004338981.1| - 0.83 10.1 8.6 2.7 8.5 0.9 2.8 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-HIT PF04438.16 gi|327312084|ref|YP_004338981.1| - 0.88 9.5 5.8 9 6.3 1.2 2.2 2 0 0 2 2 2 0 HIT zinc finger UPF0547 PF10571.9 gi|327312084|ref|YP_004338981.1| - 2.5 8.3 6.8 3.4 7.9 0.9 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ParA PF10609.9 gi|327312085|ref|YP_004338982.1| - 4.8e-35 121.2 0.0 5.2e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|327312085|ref|YP_004338982.1| - 2e-06 27.9 0.1 0.018 14.9 0.1 2.1 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|327312085|ref|YP_004338982.1| - 4.4e-06 26.8 0.0 5.3e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|327312085|ref|YP_004338982.1| - 0.0014 17.9 0.9 0.085 12.0 0.7 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase MipZ PF09140.11 gi|327312085|ref|YP_004338982.1| - 0.073 12.3 0.0 0.14 11.4 0.0 1.5 1 1 0 1 1 1 0 ATPase MipZ Zeta_toxin PF06414.12 gi|327312085|ref|YP_004338982.1| - 0.16 11.2 0.1 0.35 10.1 0.0 1.5 2 0 0 2 2 2 0 Zeta toxin AMP-binding PF00501.28 gi|327312086|ref|YP_004338983.1| - 2.7e-46 158.0 0.0 8.1e-46 156.5 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|327312086|ref|YP_004338983.1| - 4.2e-09 36.2 0.0 1e-08 35.0 0.0 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|327312086|ref|YP_004338983.1| - 1.2e-07 32.6 3.6 1.2e-07 32.6 3.6 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF4143 PF13635.6 gi|327312087|ref|YP_004338984.1| - 0.095 12.9 0.1 0.14 12.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Exonuc_VII_L PF02601.15 gi|327312087|ref|YP_004338984.1| - 0.19 11.3 0.3 0.25 10.9 0.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit NERD PF08378.11 gi|327312087|ref|YP_004338984.1| - 0.26 11.8 0.2 0.26 11.8 0.2 3.1 1 1 1 2 2 2 0 Nuclease-related domain Jnk-SapK_ap_N PF09744.9 gi|327312087|ref|YP_004338984.1| - 0.35 11.1 12.0 0.57 10.4 12.0 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 ARGLU PF15346.6 gi|327312087|ref|YP_004338984.1| - 4.5 7.1 21.9 15 5.5 21.8 1.9 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 DDRGK PF09756.9 gi|327312087|ref|YP_004338984.1| - 5.1 6.7 12.8 7 6.2 12.8 1.3 1 0 0 1 1 1 0 DDRGK domain AIRS_C PF02769.22 gi|327312088|ref|YP_004338985.1| - 9.8e-23 81.0 0.5 1.6e-22 80.3 0.5 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|327312088|ref|YP_004338985.1| - 1.5e-14 54.4 0.6 1.5e-14 54.4 0.6 2.2 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain Lactamase_B_3 PF13483.6 gi|327312089|ref|YP_004338986.1| - 2.1e-20 73.3 0.0 2.6e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|327312089|ref|YP_004338986.1| - 1.2e-12 47.8 1.0 2.8e-11 43.3 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|327312089|ref|YP_004338986.1| - 0.016 15.3 3.4 0.18 11.8 0.4 2.1 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily NTPase_I-T PF01931.18 gi|327312093|ref|YP_004338990.1| - 1.1e-37 129.3 0.0 1.4e-37 129.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF84 PaREP1 PF05942.11 gi|327312095|ref|YP_004338992.1| - 1.5e-26 92.6 8.2 1.9e-26 92.2 8.2 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF1771 PF08590.10 gi|327312095|ref|YP_004338992.1| - 0.32 11.4 3.7 0.34 11.3 0.7 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1771) Glycos_transf_1 PF00534.20 gi|327312097|ref|YP_004338994.1| - 7.6e-18 64.6 0.0 2.2e-17 63.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327312097|ref|YP_004338994.1| - 3.1e-12 47.1 0.1 6.8e-12 46.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|327312097|ref|YP_004338994.1| - 6.1e-07 29.6 0.0 1.4e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Nudix_N PF12535.8 gi|327312097|ref|YP_004338994.1| - 0.045 13.3 0.1 0.14 11.8 0.1 1.8 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal Glyco_trans_1_2 PF13524.6 gi|327312097|ref|YP_004338994.1| - 0.082 13.3 0.3 0.18 12.2 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferases group 1 ALG11_N PF15924.5 gi|327312097|ref|YP_004338994.1| - 0.15 12.1 0.1 0.33 11.0 0.1 1.6 1 1 0 1 1 1 0 ALG11 mannosyltransferase N-terminus Glyco_tranf_2_3 PF13641.6 gi|327312099|ref|YP_004338996.1| - 0.073 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 HTH_23 PF13384.6 gi|327312099|ref|YP_004338996.1| - 0.12 12.2 0.0 0.39 10.6 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain Glycos_transf_1 PF00534.20 gi|327312102|ref|YP_004338999.1| - 4.4e-18 65.4 0.0 6.5e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|327312102|ref|YP_004338999.1| - 2.1e-10 41.1 0.0 3e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|327312102|ref|YP_004338999.1| - 0.00013 22.3 0.0 0.00022 21.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_hydro_43 PF04616.14 gi|327312103|ref|YP_004339000.1| - 0.0018 17.7 0.6 0.16 11.2 0.3 3.2 2 1 0 2 2 2 2 Glycosyl hydrolases family 43 CPSase_L_D2 PF02786.17 gi|327312104|ref|YP_004339001.1| - 0.049 13.1 0.0 0.077 12.5 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|327312104|ref|YP_004339001.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain HAD_2 PF13419.6 gi|327312105|ref|YP_004339002.1| - 0.0011 19.1 0.0 0.0029 17.7 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|327312105|ref|YP_004339002.1| - 0.01 16.1 0.1 0.26 11.6 0.0 2.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase ADH_zinc_N PF00107.26 gi|327312105|ref|YP_004339002.1| - 0.087 12.8 0.0 0.58 10.1 0.0 2.0 2 0 0 2 2 2 0 Zinc-binding dehydrogenase phiKZ_IP PF12699.7 gi|327312106|ref|YP_004339003.1| - 0.0036 16.5 0.7 0.0045 16.2 0.7 1.1 1 0 0 1 1 1 1 phiKZ-like phage internal head proteins XhlA PF10779.9 gi|327312106|ref|YP_004339003.1| - 0.011 15.9 0.6 0.061 13.5 0.2 2.0 1 1 1 2 2 2 0 Haemolysin XhlA WASH_WAHD PF11945.8 gi|327312106|ref|YP_004339003.1| - 0.014 14.9 0.1 0.018 14.6 0.1 1.0 1 0 0 1 1 1 0 WAHD domain of WASH complex BLOC1_2 PF10046.9 gi|327312106|ref|YP_004339003.1| - 0.019 15.3 0.3 0.029 14.6 0.3 1.3 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Spc19 PF08287.11 gi|327312106|ref|YP_004339003.1| - 0.021 14.7 0.5 0.025 14.5 0.5 1.1 1 0 0 1 1 1 0 Spc19 FliD_C PF07195.12 gi|327312106|ref|YP_004339003.1| - 0.025 14.0 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus Baculo_gp64 PF03273.13 gi|327312106|ref|YP_004339003.1| - 0.034 13.0 0.1 0.041 12.7 0.1 1.1 1 0 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family Nup54 PF13874.6 gi|327312106|ref|YP_004339003.1| - 0.042 13.9 0.4 0.068 13.3 0.5 1.4 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Jnk-SapK_ap_N PF09744.9 gi|327312106|ref|YP_004339003.1| - 0.049 13.9 0.5 0.062 13.5 0.5 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Prefoldin_2 PF01920.20 gi|327312106|ref|YP_004339003.1| - 0.055 13.4 0.8 0.31 11.0 0.1 2.0 1 1 1 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|327312106|ref|YP_004339003.1| - 0.11 12.5 1.8 0.21 11.6 1.8 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 RRP36 PF06102.12 gi|327312106|ref|YP_004339003.1| - 0.13 12.3 0.1 0.15 12.0 0.1 1.1 1 0 0 1 1 1 0 rRNA biogenesis protein RRP36 Snapin_Pallidin PF14712.6 gi|327312106|ref|YP_004339003.1| - 0.13 12.7 0.1 0.19 12.2 0.1 1.3 1 0 0 1 1 1 0 Snapin/Pallidin DUF1664 PF07889.12 gi|327312106|ref|YP_004339003.1| - 0.13 12.3 0.1 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|327312106|ref|YP_004339003.1| - 0.14 12.2 0.0 0.15 12.1 0.0 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fmp27_WPPW PF10359.9 gi|327312106|ref|YP_004339003.1| - 0.16 10.8 0.0 0.16 10.8 0.0 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Troponin PF00992.20 gi|327312106|ref|YP_004339003.1| - 0.18 12.1 1.8 0.21 11.9 1.8 1.2 1 0 0 1 1 1 0 Troponin ABC_tran_CTD PF16326.5 gi|327312106|ref|YP_004339003.1| - 0.47 10.7 5.3 0.18 12.1 0.7 2.2 1 1 1 2 2 2 0 ABC transporter C-terminal domain DivIC PF04977.15 gi|327312106|ref|YP_004339003.1| - 0.58 10.0 2.8 2 8.3 2.8 1.9 1 1 0 1 1 1 0 Septum formation initiator DUF1664 PF07889.12 gi|327312107|ref|YP_004339004.1| - 0.00025 21.1 2.3 0.00029 20.8 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|327312107|ref|YP_004339004.1| - 0.00032 21.1 1.0 0.046 14.2 0.1 2.0 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein TolA_bind_tri PF16331.5 gi|327312107|ref|YP_004339004.1| - 0.00035 20.6 1.7 0.00097 19.2 1.7 1.7 1 1 0 1 1 1 1 TolA binding protein trimerisation Baculo_PEP_C PF04513.12 gi|327312107|ref|YP_004339004.1| - 0.0014 18.7 0.1 0.0015 18.6 0.1 1.1 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus SlyX PF04102.12 gi|327312107|ref|YP_004339004.1| - 0.0025 18.4 2.6 0.0032 18.1 2.5 1.3 1 1 0 1 1 1 1 SlyX MscS_porin PF12795.7 gi|327312107|ref|YP_004339004.1| - 0.0073 15.9 0.1 0.0074 15.9 0.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain Laminin_II PF06009.12 gi|327312107|ref|YP_004339004.1| - 0.0075 16.3 0.3 0.0086 16.1 0.3 1.1 1 0 0 1 1 1 1 Laminin Domain II YabA PF06156.13 gi|327312107|ref|YP_004339004.1| - 0.012 16.2 0.1 0.013 16.1 0.1 1.2 1 0 0 1 1 1 0 Initiation control protein YabA DUF2570 PF10828.8 gi|327312107|ref|YP_004339004.1| - 0.013 15.3 0.5 0.014 15.2 0.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2570) DUF745 PF05335.13 gi|327312107|ref|YP_004339004.1| - 0.013 15.2 0.1 0.014 15.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF745) CENP-H PF05837.12 gi|327312107|ref|YP_004339004.1| - 0.017 15.5 0.1 0.018 15.5 0.1 1.1 1 0 0 1 1 1 0 Centromere protein H (CENP-H) FliJ PF02050.16 gi|327312107|ref|YP_004339004.1| - 0.021 15.1 0.2 0.023 14.9 0.2 1.1 1 0 0 1 1 1 0 Flagellar FliJ protein MCPsignal PF00015.21 gi|327312107|ref|YP_004339004.1| - 0.023 14.5 1.5 0.026 14.3 1.5 1.1 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DivIC PF04977.15 gi|327312107|ref|YP_004339004.1| - 0.026 14.3 0.2 0.033 13.9 0.2 1.2 1 0 0 1 1 1 0 Septum formation initiator DUF641 PF04859.12 gi|327312107|ref|YP_004339004.1| - 0.034 14.5 0.2 0.038 14.3 0.2 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Spc7 PF08317.11 gi|327312107|ref|YP_004339004.1| - 0.047 12.6 0.1 0.048 12.5 0.1 1.0 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF948 PF06103.11 gi|327312107|ref|YP_004339004.1| - 0.047 13.9 0.9 0.19 12.0 0.9 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) MPS2 PF17060.5 gi|327312107|ref|YP_004339004.1| - 0.066 12.5 0.1 0.066 12.5 0.1 1.0 1 0 0 1 1 1 0 Monopolar spindle protein 2 GIT_CC PF16559.5 gi|327312107|ref|YP_004339004.1| - 0.097 12.6 0.6 0.24 11.3 0.6 1.7 1 1 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor FlaC_arch PF05377.11 gi|327312107|ref|YP_004339004.1| - 0.12 12.7 4.6 0.9 10.0 4.7 2.0 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) COG2 PF06148.11 gi|327312107|ref|YP_004339004.1| - 0.16 12.1 1.3 0.21 11.7 1.3 1.4 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_uzoniensis_768_20_uid65089/NC_015315.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_uzoniensis_768_20_uid65089/NC_015315.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_uzoniensis_768_20_uid65089/NC_015315.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_uzoniensis_768_20_uid65089/NC_015315.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:15:42 2019 # [ok]