# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- NTPase_I-T PF01931.18 gi|352681235|ref|YP_004891759.1| - 1.1e-26 93.6 0.6 1.8e-26 92.8 0.6 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF84 Usp PF00582.26 gi|352681237|ref|YP_004891761.1| - 4.4e-38 131.0 0.5 4.9e-38 130.8 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|352681237|ref|YP_004891761.1| - 0.0053 16.2 0.1 0.025 14.0 0.0 1.7 1 1 0 2 2 2 1 Xylose isomerase-like TIM barrel Lactamase_B PF00753.27 gi|352681238|ref|YP_004891762.1| - 4.8e-12 46.3 5.8 8.3e-12 45.5 5.8 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|352681238|ref|YP_004891762.1| - 0.0004 20.3 0.1 0.00061 19.7 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|352681238|ref|YP_004891762.1| - 0.0035 16.9 0.3 0.0056 16.2 0.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Amidase PF01425.21 gi|352681239|ref|YP_004891763.1| - 8.6e-82 275.5 0.9 2.1e-80 270.9 0.9 2.0 1 1 0 1 1 1 1 Amidase Translin PF01997.16 gi|352681240|ref|YP_004891764.1| - 5.5e-19 69.0 0.9 8.5e-18 65.1 0.9 2.0 1 1 0 1 1 1 1 Translin family AA_permease_2 PF13520.6 gi|352681241|ref|YP_004891765.1| - 6.1e-30 104.4 36.7 7.5e-30 104.1 36.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|352681241|ref|YP_004891765.1| - 1.1e-16 60.5 35.3 1.6e-16 60.0 35.3 1.2 1 0 0 1 1 1 1 Amino acid permease HTH_45 PF14947.6 gi|352681242|ref|YP_004891766.1| - 0.0026 17.7 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix Radical_SAM PF04055.21 gi|352681244|ref|YP_004891768.1| - 4.9e-13 49.8 0.0 1e-12 48.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|352681244|ref|YP_004891768.1| - 5.3e-06 26.7 0.0 1e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|352681244|ref|YP_004891768.1| - 0.00011 22.3 0.0 0.00023 21.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain MFS_1 PF07690.16 gi|352681245|ref|YP_004891769.1| - 2e-22 79.6 53.9 5.4e-15 55.2 17.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|352681245|ref|YP_004891769.1| - 0.45 9.3 28.5 0.17 10.7 15.9 2.9 2 1 1 3 3 3 0 Sugar (and other) transporter Ribosomal_S10 PF00338.22 gi|352681246|ref|YP_004891770.1| - 3.5e-27 94.5 0.1 3.9e-27 94.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|352681246|ref|YP_004891770.1| - 0.0016 19.2 0.0 0.0027 18.5 0.0 1.3 1 0 0 1 1 1 1 Primosomal protein N C-terminal domain Ribosomal_L11 PF00298.19 gi|352681246|ref|YP_004891770.1| - 0.015 15.8 0.1 0.021 15.3 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L11, RNA binding domain GTP_EFTU PF00009.27 gi|352681247|ref|YP_004891771.1| - 4.5e-52 176.4 0.0 6.7e-52 175.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|352681247|ref|YP_004891771.1| - 2e-38 131.1 0.5 7.1e-38 129.4 0.0 2.2 3 0 0 3 3 3 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|352681247|ref|YP_004891771.1| - 4.9e-19 68.5 4.2 7.4e-19 67.9 2.3 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|352681247|ref|YP_004891771.1| - 5.3e-08 32.6 1.0 1.5e-07 31.2 1.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|352681247|ref|YP_004891771.1| - 5.4e-05 23.3 0.1 0.00039 20.5 0.1 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|352681247|ref|YP_004891771.1| - 0.00013 21.6 0.5 0.0017 17.9 0.2 2.7 2 1 0 2 2 2 1 Ferrous iron transport protein B Septin PF00735.18 gi|352681247|ref|YP_004891771.1| - 0.044 13.1 0.0 0.11 11.8 0.0 1.6 1 1 0 1 1 1 0 Septin RsgA_GTPase PF03193.16 gi|352681247|ref|YP_004891771.1| - 0.065 13.1 0.0 0.78 9.6 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase Ras PF00071.22 gi|352681247|ref|YP_004891771.1| - 0.1 12.2 0.1 0.6 9.7 0.0 2.1 2 1 0 2 2 2 0 Ras family NRD1_2 PF01995.16 gi|352681247|ref|YP_004891771.1| - 0.12 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 NrpR regulatory domains NRD1 and 2 Dynamin_N PF00350.23 gi|352681247|ref|YP_004891771.1| - 0.14 12.2 0.1 15 5.6 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Ribonuc_L-PSP PF01042.21 gi|352681248|ref|YP_004891772.1| - 1.5e-43 147.6 0.0 1.7e-43 147.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP MnmE_helical PF12631.7 gi|352681251|ref|YP_004891775.1| - 0.24 11.5 6.7 0.092 12.9 1.2 2.2 1 1 1 2 2 2 0 MnmE helical domain Polyketide_cyc2 PF10604.9 gi|352681253|ref|YP_004891777.1| - 0.00058 20.1 0.4 0.0052 17.1 0.4 2.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|352681253|ref|YP_004891777.1| - 0.035 14.3 0.0 0.065 13.4 0.0 1.5 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport Thermopsin PF05317.11 gi|352681256|ref|YP_004891780.1| - 1.2e-37 129.8 2.6 1.2e-37 129.8 2.6 1.8 2 0 0 2 2 2 1 Thermopsin AIM24 PF01987.17 gi|352681258|ref|YP_004891782.1| - 2.4e-47 161.3 0.1 2.7e-47 161.2 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 adh_short PF00106.25 gi|352681259|ref|YP_004891783.1| - 7.8e-48 162.5 0.0 9.9e-48 162.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|352681259|ref|YP_004891783.1| - 1e-28 100.5 0.0 1.2e-28 100.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|352681259|ref|YP_004891783.1| - 4.5e-10 39.7 0.0 6.1e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|352681259|ref|YP_004891783.1| - 0.0003 20.3 0.0 0.00049 19.6 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|352681259|ref|YP_004891783.1| - 0.0015 18.5 0.2 0.0093 15.9 0.1 2.2 2 1 0 2 2 2 1 NAD(P)H-binding DUF1776 PF08643.10 gi|352681259|ref|YP_004891783.1| - 0.0051 16.2 0.0 0.0078 15.6 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) TGS PF02824.21 gi|352681259|ref|YP_004891783.1| - 0.023 14.7 0.1 0.26 11.4 0.0 2.4 2 0 0 2 2 2 0 TGS domain GDP_Man_Dehyd PF16363.5 gi|352681259|ref|YP_004891783.1| - 0.23 10.8 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|352681259|ref|YP_004891783.1| - 0.23 10.5 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein EamA PF00892.20 gi|352681260|ref|YP_004891784.1| - 3.9e-34 117.8 37.2 2.2e-18 66.8 11.0 2.3 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|352681260|ref|YP_004891784.1| - 0.0018 17.7 11.9 0.015 14.6 11.9 2.4 1 1 0 1 1 1 1 Triose-phosphate Transporter family Phage_holin_2_4 PF16082.5 gi|352681260|ref|YP_004891784.1| - 0.4 10.5 7.8 1.3 8.8 0.4 3.6 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like MFS_1 PF07690.16 gi|352681261|ref|YP_004891785.1| - 6.3e-25 87.8 70.8 1.9e-15 56.6 33.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|352681261|ref|YP_004891785.1| - 1.8e-07 30.4 34.6 1.4e-05 24.2 14.2 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.6 gi|352681261|ref|YP_004891785.1| - 0.035 12.7 31.3 0.011 14.3 9.1 2.7 2 2 0 2 2 2 0 MFS/sugar transport protein Thermopsin PF05317.11 gi|352681262|ref|YP_004891786.1| - 1.3e-22 80.6 7.4 4e-22 78.9 7.4 1.7 1 1 0 1 1 1 1 Thermopsin Thioredoxin PF00085.20 gi|352681263|ref|YP_004891787.1| - 4.8e-07 29.7 0.0 5.7e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|352681263|ref|YP_004891787.1| - 0.027 14.3 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|352681263|ref|YP_004891787.1| - 0.036 14.1 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain LEF-9 PF05094.12 gi|352681263|ref|YP_004891787.1| - 0.093 11.3 0.0 0.11 11.0 0.0 1.0 1 0 0 1 1 1 0 Late expression factor 9 (LEF-9) HTH_24 PF13412.6 gi|352681265|ref|YP_004891789.1| - 0.00023 20.6 0.1 0.001 18.6 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|352681265|ref|YP_004891789.1| - 0.013 15.3 0.0 0.064 13.1 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain rve_3 PF13683.6 gi|352681265|ref|YP_004891789.1| - 0.12 12.2 0.1 0.23 11.3 0.1 1.4 1 0 0 1 1 1 0 Integrase core domain HTH_36 PF13730.6 gi|352681265|ref|YP_004891789.1| - 0.16 12.0 0.7 2.1 8.3 0.2 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain NiFe_hyd_SSU_C PF14720.6 gi|352681266|ref|YP_004891790.1| - 9.1e-24 83.6 1.7 1.6e-23 82.9 1.7 1.4 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|352681266|ref|YP_004891790.1| - 6.5e-18 64.8 0.0 2.1e-17 63.2 0.0 1.9 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|352681266|ref|YP_004891790.1| - 7.8e-05 22.3 0.7 7.8e-05 22.3 0.7 3.9 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence Ferric_reduct PF01794.19 gi|352681267|ref|YP_004891791.1| - 0.0097 16.0 3.9 0.0097 16.0 3.9 3.8 1 1 3 4 4 4 1 Ferric reductase like transmembrane component DUF2107 PF09880.9 gi|352681267|ref|YP_004891791.1| - 0.13 12.4 0.2 0.13 12.4 0.2 2.8 3 1 0 3 3 3 0 Predicted membrane protein (DUF2107) PspB PF06667.12 gi|352681267|ref|YP_004891791.1| - 4.4 7.4 7.2 23 5.2 0.2 3.4 3 0 0 3 3 3 0 Phage shock protein B ESSS PF10183.9 gi|352681267|ref|YP_004891791.1| - 7.1 6.9 5.4 2.2 8.5 0.1 2.8 2 1 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) NiFeSe_Hases PF00374.19 gi|352681268|ref|YP_004891792.1| - 1.2e-47 163.0 0.0 2e-27 96.2 0.1 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase HycI PF01750.18 gi|352681269|ref|YP_004891793.1| - 0.009 15.8 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase maturation protease DUF488 PF04343.13 gi|352681270|ref|YP_004891794.1| - 0.011 16.4 0.0 0.015 15.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF488 Phosphodiest PF01663.22 gi|352681272|ref|YP_004891796.1| - 8.3e-23 81.5 0.0 7.7e-20 71.8 0.0 3.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|352681272|ref|YP_004891796.1| - 1.8e-08 34.7 0.0 1.1e-05 25.6 0.0 2.1 2 0 0 2 2 2 2 PglZ domain DJ-1_PfpI PF01965.24 gi|352681273|ref|YP_004891797.1| - 3e-51 173.5 0.0 3.5e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|352681273|ref|YP_004891797.1| - 0.0003 20.6 0.0 0.00039 20.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|352681273|ref|YP_004891797.1| - 0.0004 20.1 0.0 0.016 14.9 0.0 2.1 2 0 0 2 2 2 1 ThiJ/PfpI family-like Catalase_C PF18011.1 gi|352681273|ref|YP_004891797.1| - 0.0024 17.5 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|352681273|ref|YP_004891797.1| - 0.0033 17.1 0.0 0.0046 16.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain RimK PF08443.11 gi|352681274|ref|YP_004891798.1| - 1e-32 113.3 0.0 3.1e-32 111.7 0.0 1.8 2 1 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|352681274|ref|YP_004891798.1| - 4.1e-10 39.9 0.0 8.1e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|352681274|ref|YP_004891798.1| - 2.7e-06 26.9 0.0 4.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|352681274|ref|YP_004891798.1| - 0.0092 15.5 0.0 0.035 13.6 0.0 1.8 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus Phage_Orf51 PF06194.11 gi|352681274|ref|YP_004891798.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Phage Conserved Open Reading Frame 51 CPSase_L_D2 PF02786.17 gi|352681275|ref|YP_004891799.1| - 4e-94 314.0 0.0 1.1e-62 211.3 0.1 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|352681275|ref|YP_004891799.1| - 1.3e-26 93.3 0.0 3.1e-26 92.1 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|352681275|ref|YP_004891799.1| - 2.2e-17 63.2 0.1 5.7e-09 35.8 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|352681275|ref|YP_004891799.1| - 5.5e-11 42.3 0.0 0.00028 20.6 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|352681275|ref|YP_004891799.1| - 6.8e-11 42.1 0.0 1.6e-05 24.5 0.0 2.6 3 0 0 3 3 3 2 D-ala D-ala ligase C-terminus ATP-grasp_5 PF13549.6 gi|352681275|ref|YP_004891799.1| - 1.3e-10 41.1 0.0 0.00038 20.0 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|352681275|ref|YP_004891799.1| - 4.4e-09 36.6 0.0 0.00049 20.2 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|352681275|ref|YP_004891799.1| - 6.8e-06 26.0 0.0 0.037 13.8 0.0 2.7 2 1 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|352681275|ref|YP_004891799.1| - 1e-05 25.2 0.0 0.2 11.2 0.0 3.0 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|352681275|ref|YP_004891799.1| - 0.069 12.7 0.0 2.2 7.8 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp domain RNA_pol_inhib PF16857.5 gi|352681275|ref|YP_004891799.1| - 0.11 12.3 0.0 1.9 8.3 0.0 2.8 2 0 0 2 2 2 0 RNA polymerase inhibitor MFS_1 PF07690.16 gi|352681276|ref|YP_004891800.1| - 1.2e-23 83.6 54.9 1.3e-23 83.5 53.6 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily OATP PF03137.20 gi|352681276|ref|YP_004891800.1| - 0.0004 18.8 0.7 0.00068 18.0 0.3 1.6 1 1 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family Lactamase_B PF00753.27 gi|352681277|ref|YP_004891801.1| - 3.4e-18 66.4 1.5 1.8e-17 64.0 1.5 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|352681277|ref|YP_004891801.1| - 0.00094 18.7 0.1 0.0016 18.0 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain C5-epim_C PF06662.13 gi|352681277|ref|YP_004891801.1| - 0.17 11.4 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 D-glucuronyl C5-epimerase C-terminus HTH_11 PF08279.12 gi|352681278|ref|YP_004891802.1| - 0.0037 17.2 0.2 0.018 15.0 0.3 2.0 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.10 gi|352681278|ref|YP_004891802.1| - 0.0041 16.9 4.1 0.012 15.4 3.9 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|352681278|ref|YP_004891802.1| - 0.0075 16.2 1.0 0.071 13.1 0.7 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HemN_C PF06969.16 gi|352681278|ref|YP_004891802.1| - 0.022 14.8 0.2 0.064 13.3 0.1 1.9 2 0 0 2 2 2 0 HemN C-terminal domain FUR PF01475.19 gi|352681278|ref|YP_004891802.1| - 0.09 12.9 0.1 1.5 9.0 0.1 2.2 2 0 0 2 2 2 0 Ferric uptake regulator family HTH_26 PF13443.6 gi|352681278|ref|YP_004891802.1| - 0.12 12.8 0.0 6.6 7.3 0.1 2.7 3 0 0 3 3 3 0 Cro/C1-type HTH DNA-binding domain Rrf2 PF02082.20 gi|352681278|ref|YP_004891802.1| - 0.45 10.9 2.2 3.4 8.1 0.6 2.7 2 1 1 3 3 3 0 Transcriptional regulator NrfD PF03916.14 gi|352681279|ref|YP_004891803.1| - 9e-26 91.2 39.3 1.8e-25 90.3 39.1 1.5 1 1 0 1 1 1 1 Polysulphide reductase, NrfD DNA_pack_N PF02500.15 gi|352681279|ref|YP_004891803.1| - 0.58 9.9 1.9 1.1 9.0 0.2 1.9 2 0 0 2 2 2 0 Probable DNA packing protein, N-terminus Molydop_binding PF01568.21 gi|352681280|ref|YP_004891804.1| - 1.4e-17 63.7 0.1 1e-16 61.0 0.0 2.5 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|352681280|ref|YP_004891804.1| - 7.9e-06 25.5 1.5 1.5e-05 24.6 1.5 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Molybdopterin PF00384.22 gi|352681280|ref|YP_004891804.1| - 9.6e-06 24.8 0.0 0.00077 18.5 0.0 3.1 4 0 0 4 4 4 1 Molybdopterin oxidoreductase UCR_Fe-S_N PF10399.9 gi|352681280|ref|YP_004891804.1| - 0.054 12.9 2.9 0.15 11.4 2.9 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Molybdop_Fe4S4 PF04879.16 gi|352681280|ref|YP_004891804.1| - 0.14 12.1 0.5 0.35 10.9 0.5 1.7 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.6 gi|352681281|ref|YP_004891805.1| - 1.6e-20 73.1 6.6 1.6e-20 73.1 6.6 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352681281|ref|YP_004891805.1| - 6.8e-15 55.4 19.7 1.2e-06 29.0 6.6 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352681281|ref|YP_004891805.1| - 6.8e-12 44.7 27.4 2.2e-06 27.2 5.1 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352681281|ref|YP_004891805.1| - 2.2e-11 43.7 16.3 3.6e-06 27.0 4.4 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681281|ref|YP_004891805.1| - 1.1e-10 41.1 30.3 9.6e-06 25.5 4.4 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352681281|ref|YP_004891805.1| - 4.1e-09 36.4 24.9 8.1e-06 25.9 12.5 3.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352681281|ref|YP_004891805.1| - 1.7e-07 30.9 33.2 0.0002 21.3 3.5 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|352681281|ref|YP_004891805.1| - 4.1e-07 30.5 33.2 0.066 14.2 3.8 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|352681281|ref|YP_004891805.1| - 3.4e-06 27.1 32.2 0.0037 17.7 3.4 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352681281|ref|YP_004891805.1| - 6.4e-06 27.0 21.7 0.041 14.8 5.2 4.2 3 1 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|352681281|ref|YP_004891805.1| - 0.0039 17.3 8.8 0.0039 17.3 8.8 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352681281|ref|YP_004891805.1| - 0.0054 17.2 28.1 0.81 10.2 12.9 3.7 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352681281|ref|YP_004891805.1| - 0.0071 16.9 23.7 1.1 9.9 7.7 4.1 2 1 2 4 4 4 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|352681281|ref|YP_004891805.1| - 2.7 8.2 13.5 0.11 12.7 5.0 2.7 2 1 1 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|352681281|ref|YP_004891805.1| - 8.8 7.2 22.1 3.5 8.5 1.6 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Nitrate_red_del PF02613.15 gi|352681282|ref|YP_004891806.1| - 3.4e-15 56.2 0.1 5.7e-15 55.5 0.1 1.3 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4 PF00037.27 gi|352681283|ref|YP_004891807.1| - 1.8e-22 78.2 35.6 7.7e-08 31.8 1.9 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|352681283|ref|YP_004891807.1| - 5.9e-19 68.4 22.8 2e-08 34.7 8.7 3.8 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681283|ref|YP_004891807.1| - 1.1e-16 60.1 45.2 1.5e-06 28.0 1.3 6.0 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|352681283|ref|YP_004891807.1| - 3.5e-13 48.8 36.4 6.4e-05 22.8 2.3 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352681283|ref|YP_004891807.1| - 4.7e-13 49.1 27.1 1.2e-07 31.8 6.7 3.8 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352681283|ref|YP_004891807.1| - 2.4e-12 47.6 28.2 2.7e-05 25.0 0.3 4.7 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|352681283|ref|YP_004891807.1| - 4.5e-12 45.9 52.7 3.4e-06 27.1 10.4 4.5 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352681283|ref|YP_004891807.1| - 1.2e-10 41.7 16.1 0.012 16.1 2.8 4.6 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|352681283|ref|YP_004891807.1| - 4.3e-10 39.6 28.8 2.1e-07 31.0 6.4 3.7 3 1 0 4 4 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681283|ref|YP_004891807.1| - 0.00039 20.7 52.9 0.0017 18.7 2.0 5.9 7 0 0 7 7 5 4 4Fe-4S binding domain Fer4_3 PF12798.7 gi|352681283|ref|YP_004891807.1| - 0.00065 20.5 49.2 0.082 13.9 4.5 5.2 5 0 0 5 5 4 3 4Fe-4S binding domain Zn-ribbon_8 PF09723.10 gi|352681283|ref|YP_004891807.1| - 0.0073 16.4 0.2 0.0073 16.4 0.2 4.8 4 3 0 4 4 2 1 Zinc ribbon domain Fer4_17 PF13534.6 gi|352681283|ref|YP_004891807.1| - 0.019 15.5 38.5 0.5 11.0 2.7 5.1 2 2 4 6 6 6 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352681283|ref|YP_004891807.1| - 0.054 14.2 24.6 0.51 11.1 1.2 4.8 3 1 1 4 4 4 0 4Fe-4S single cluster domain ETF_QO PF05187.13 gi|352681283|ref|YP_004891807.1| - 0.075 13.2 4.5 0.092 12.9 0.1 2.4 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_19 PF06902.11 gi|352681283|ref|YP_004891807.1| - 0.12 12.5 0.2 0.12 12.5 0.2 4.0 2 2 2 4 4 4 0 Divergent 4Fe-4S mono-cluster Fer4_22 PF17179.4 gi|352681283|ref|YP_004891807.1| - 0.18 12.7 25.4 0.25 12.2 0.5 4.8 4 1 3 7 7 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|352681283|ref|YP_004891807.1| - 0.4 11.3 33.2 0.67 10.6 2.6 5.2 4 1 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I HypA PF01155.19 gi|352681283|ref|YP_004891807.1| - 0.81 9.7 0.0 0.81 9.7 0.0 3.0 2 1 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lactamase_B_2 PF12706.7 gi|352681284|ref|YP_004891808.1| - 2.7e-22 79.3 1.7 3.2e-22 79.1 1.7 1.0 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|352681284|ref|YP_004891808.1| - 1.2e-11 45.0 2.2 2.5e-11 43.9 2.2 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|352681284|ref|YP_004891808.1| - 0.016 15.1 0.1 0.037 13.9 0.1 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|352681284|ref|YP_004891808.1| - 0.036 13.5 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain DUF2840 PF11000.8 gi|352681284|ref|YP_004891808.1| - 0.046 13.5 0.1 63 3.3 0.0 3.3 3 1 1 4 4 4 0 Protein of unknown function (DUF2840) DUF917 PF06032.12 gi|352681284|ref|YP_004891808.1| - 0.13 11.1 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF917) ABC_tran PF00005.27 gi|352681285|ref|YP_004891809.1| - 3.8e-36 124.6 0.0 5.2e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681285|ref|YP_004891809.1| - 1e-09 38.6 1.2 0.00091 19.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|352681285|ref|YP_004891809.1| - 3.2e-07 30.4 0.0 9.1e-07 29.0 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|352681285|ref|YP_004891809.1| - 1.4e-05 24.6 0.3 0.033 13.6 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|352681285|ref|YP_004891809.1| - 0.00026 21.4 0.1 0.00045 20.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|352681285|ref|YP_004891809.1| - 0.001 19.6 1.2 0.0025 18.3 0.1 1.9 2 0 0 2 2 2 1 AAA domain TOBE PF03459.17 gi|352681285|ref|YP_004891809.1| - 0.0019 18.5 0.0 0.0079 16.5 0.0 2.0 2 0 0 2 2 2 1 TOBE domain NACHT PF05729.12 gi|352681285|ref|YP_004891809.1| - 0.0023 17.9 0.2 0.016 15.1 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA PF00004.29 gi|352681285|ref|YP_004891809.1| - 0.0052 17.2 0.1 0.051 14.0 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|352681285|ref|YP_004891809.1| - 0.013 15.8 0.2 0.031 14.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|352681285|ref|YP_004891809.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|352681285|ref|YP_004891809.1| - 0.016 14.9 0.0 0.048 13.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|352681285|ref|YP_004891809.1| - 0.017 14.9 0.1 0.034 13.9 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DLIC PF05783.11 gi|352681285|ref|YP_004891809.1| - 0.02 13.7 0.0 0.025 13.4 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|352681285|ref|YP_004891809.1| - 0.029 14.9 0.0 0.047 14.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|352681285|ref|YP_004891809.1| - 0.03 14.5 0.0 0.076 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|352681285|ref|YP_004891809.1| - 0.038 14.0 0.0 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|352681285|ref|YP_004891809.1| - 0.047 13.6 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|352681285|ref|YP_004891809.1| - 0.053 12.6 0.0 0.088 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_13 PF13166.6 gi|352681285|ref|YP_004891809.1| - 0.055 12.1 0.0 0.4 9.3 0.0 1.9 1 1 1 2 2 2 0 AAA domain cobW PF02492.19 gi|352681285|ref|YP_004891809.1| - 0.058 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|352681285|ref|YP_004891809.1| - 0.069 13.4 0.6 0.13 12.5 0.2 1.8 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|352681285|ref|YP_004891809.1| - 0.071 12.8 0.0 0.23 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|352681285|ref|YP_004891809.1| - 0.071 13.1 0.0 0.68 9.9 0.0 2.4 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|352681285|ref|YP_004891809.1| - 0.078 12.3 0.0 1 8.6 0.0 2.1 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.22 gi|352681285|ref|YP_004891809.1| - 0.095 11.9 0.1 0.74 8.9 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain FtsK_SpoIIIE PF01580.18 gi|352681285|ref|YP_004891809.1| - 0.11 11.9 0.2 0.22 10.8 0.0 1.5 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_15 PF13175.6 gi|352681285|ref|YP_004891809.1| - 0.11 12.2 0.0 0.25 11.0 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|352681285|ref|YP_004891809.1| - 0.18 12.1 0.1 1.9 8.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA12 PF10443.9 gi|352681285|ref|YP_004891809.1| - 0.18 10.5 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein G-alpha PF00503.20 gi|352681285|ref|YP_004891809.1| - 0.22 10.6 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit BPD_transp_1 PF00528.22 gi|352681286|ref|YP_004891810.1| - 1.1e-20 74.2 44.3 1.1e-12 48.0 18.1 4.4 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|352681287|ref|YP_004891811.1| - 6.7e-31 108.4 4.3 1.5e-30 107.2 4.3 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|352681287|ref|YP_004891811.1| - 1.2e-25 90.9 1.8 1.9e-25 90.3 1.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|352681287|ref|YP_004891811.1| - 0.029 13.8 0.0 0.072 12.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF2749 PF10907.8 gi|352681287|ref|YP_004891811.1| - 0.032 14.4 2.3 0.067 13.4 2.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF4330 PF14221.6 gi|352681287|ref|YP_004891811.1| - 0.094 12.9 0.8 0.18 12.0 0.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF2771 PF10969.8 gi|352681287|ref|YP_004891811.1| - 0.42 10.6 3.2 0.83 9.7 3.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) RHH_1 PF01402.21 gi|352681290|ref|YP_004891814.1| - 3.8e-05 23.5 0.1 9.7e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF1221 PF06760.11 gi|352681290|ref|YP_004891814.1| - 0.033 13.7 0.1 0.054 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1221) Glyco_transf_21 PF13506.6 gi|352681291|ref|YP_004891815.1| - 4.5e-18 65.3 0.0 7.1e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|352681291|ref|YP_004891815.1| - 7.2e-13 48.7 0.0 9.9e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352681291|ref|YP_004891815.1| - 9.2e-12 45.3 0.0 1.3e-11 44.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|352681291|ref|YP_004891815.1| - 0.0026 17.7 0.6 0.0046 16.9 0.6 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 ROK PF00480.20 gi|352681293|ref|YP_004891817.1| - 1.4e-49 169.1 0.0 1.9e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|352681293|ref|YP_004891817.1| - 0.026 14.1 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain Radical_SAM PF04055.21 gi|352681294|ref|YP_004891818.1| - 7.7e-11 42.6 0.0 1.4e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|352681294|ref|YP_004891818.1| - 5.7e-06 26.6 0.0 1.3e-05 25.5 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|352681294|ref|YP_004891818.1| - 0.00051 20.5 0.0 0.0024 18.3 0.0 2.1 1 1 1 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|352681294|ref|YP_004891818.1| - 0.0011 19.1 0.0 0.0033 17.5 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF2705 PF10920.8 gi|352681295|ref|YP_004891819.1| - 0.045 13.1 2.9 0.04 13.2 1.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2705) ABC_tran PF00005.27 gi|352681296|ref|YP_004891820.1| - 8.7e-55 185.0 0.0 3.9e-28 98.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|352681296|ref|YP_004891820.1| - 2.9e-17 63.4 5.7 8.7e-05 22.5 0.0 4.1 3 1 0 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681296|ref|YP_004891820.1| - 2.6e-15 56.5 2.4 1.6e-05 24.5 0.3 4.0 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352681296|ref|YP_004891820.1| - 7.5e-11 41.6 0.2 0.00021 21.0 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|352681296|ref|YP_004891820.1| - 1.9e-08 34.7 0.1 0.0051 17.1 0.0 3.5 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|352681296|ref|YP_004891820.1| - 2.6e-07 31.3 0.1 0.013 16.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|352681296|ref|YP_004891820.1| - 4.1e-07 29.9 1.9 0.063 13.0 0.1 3.6 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|352681296|ref|YP_004891820.1| - 5.7e-07 30.1 0.1 0.025 14.9 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|352681296|ref|YP_004891820.1| - 1.4e-06 28.3 0.1 0.0063 16.4 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1 PF01926.23 gi|352681296|ref|YP_004891820.1| - 2.7e-06 27.4 0.5 0.0064 16.6 0.1 2.6 2 0 0 2 2 2 2 50S ribosome-binding GTPase T2SSE PF00437.20 gi|352681296|ref|YP_004891820.1| - 3.9e-06 26.1 0.1 0.01 14.9 0.0 2.7 3 0 0 3 3 3 2 Type II/IV secretion system protein AAA_25 PF13481.6 gi|352681296|ref|YP_004891820.1| - 6e-06 26.0 0.1 0.16 11.5 0.0 3.1 4 0 0 4 4 2 2 AAA domain SbcCD_C PF13558.6 gi|352681296|ref|YP_004891820.1| - 3.5e-05 24.0 0.1 0.68 10.2 0.0 3.7 2 2 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|352681296|ref|YP_004891820.1| - 3.9e-05 23.5 0.0 0.13 11.9 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain TniB PF05621.11 gi|352681296|ref|YP_004891820.1| - 4.8e-05 22.8 2.4 0.086 12.2 0.0 3.6 4 0 0 4 4 4 1 Bacterial TniB protein NB-ARC PF00931.22 gi|352681296|ref|YP_004891820.1| - 7.9e-05 22.0 0.6 0.092 11.9 0.1 2.2 2 0 0 2 2 2 2 NB-ARC domain Mg_chelatase PF01078.21 gi|352681296|ref|YP_004891820.1| - 0.00014 21.3 0.1 0.017 14.5 0.0 2.8 3 0 0 3 3 3 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|352681296|ref|YP_004891820.1| - 0.00027 20.7 1.3 2.8 7.6 0.0 4.0 4 0 0 4 4 4 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|352681296|ref|YP_004891820.1| - 0.00037 20.1 0.1 0.083 12.4 0.0 2.6 3 0 0 3 3 3 1 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|352681296|ref|YP_004891820.1| - 0.00056 20.3 0.1 1.5 9.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase Dynamin_N PF00350.23 gi|352681296|ref|YP_004891820.1| - 0.00059 19.9 0.6 0.16 12.0 0.3 2.3 2 0 0 2 2 2 1 Dynamin family AAA_33 PF13671.6 gi|352681296|ref|YP_004891820.1| - 0.00094 19.4 0.7 0.76 9.9 0.1 2.5 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|352681296|ref|YP_004891820.1| - 0.0013 18.7 0.9 1.6 8.6 0.1 2.7 3 0 0 3 3 2 2 NACHT domain AAA_5 PF07728.14 gi|352681296|ref|YP_004891820.1| - 0.0013 18.7 0.5 1.9 8.5 0.0 3.6 4 0 0 4 4 3 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|352681296|ref|YP_004891820.1| - 0.0015 19.0 0.1 29 5.1 0.0 4.1 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|352681296|ref|YP_004891820.1| - 0.0018 17.2 0.3 1.9 7.2 0.0 2.9 3 0 0 3 3 3 1 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.18 gi|352681296|ref|YP_004891820.1| - 0.0043 16.4 0.5 0.32 10.3 0.1 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family ATP_bind_1 PF03029.17 gi|352681296|ref|YP_004891820.1| - 0.0052 16.6 0.3 3.4 7.4 0.1 2.3 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|352681296|ref|YP_004891820.1| - 0.0053 16.4 0.4 1.8 8.1 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|352681296|ref|YP_004891820.1| - 0.0061 15.9 0.4 0.3 10.4 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_24 PF13479.6 gi|352681296|ref|YP_004891820.1| - 0.0081 15.9 1.1 3.8 7.2 0.0 2.7 3 0 0 3 3 2 0 AAA domain AIG1 PF04548.16 gi|352681296|ref|YP_004891820.1| - 0.0094 15.3 0.3 0.0094 15.3 0.3 1.7 2 0 0 2 2 1 1 AIG1 family Ploopntkinase3 PF18751.1 gi|352681296|ref|YP_004891820.1| - 0.0096 15.8 0.1 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 AAA_18 PF13238.6 gi|352681296|ref|YP_004891820.1| - 0.01 16.4 1.1 7.4 7.1 0.0 3.3 3 0 0 3 3 3 0 AAA domain ATPase_2 PF01637.18 gi|352681296|ref|YP_004891820.1| - 0.015 15.2 0.3 4.7 7.1 0.0 2.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DUF87 PF01935.17 gi|352681296|ref|YP_004891820.1| - 0.017 15.2 0.7 2.2 8.3 0.1 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_27 PF13514.6 gi|352681296|ref|YP_004891820.1| - 0.02 14.5 0.1 5.8 6.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|352681296|ref|YP_004891820.1| - 0.024 14.0 3.9 4.4 6.6 0.0 3.6 4 0 0 4 4 3 0 KaiC Septin PF00735.18 gi|352681296|ref|YP_004891820.1| - 0.025 13.9 0.3 0.68 9.2 0.0 2.1 2 0 0 2 2 2 0 Septin AAA_14 PF13173.6 gi|352681296|ref|YP_004891820.1| - 0.025 14.6 0.0 2.7 8.0 0.0 3.2 4 0 0 4 4 3 0 AAA domain G-alpha PF00503.20 gi|352681296|ref|YP_004891820.1| - 0.032 13.4 0.0 0.64 9.1 0.0 2.0 2 0 0 2 2 2 0 G-protein alpha subunit DLIC PF05783.11 gi|352681296|ref|YP_004891820.1| - 0.034 13.0 0.1 6.4 5.5 0.0 2.1 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) PduV-EutP PF10662.9 gi|352681296|ref|YP_004891820.1| - 0.065 13.0 0.2 1.1 9.0 0.0 2.5 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation SRP54 PF00448.22 gi|352681296|ref|YP_004891820.1| - 0.079 12.6 0.4 12 5.4 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain FeoB_N PF02421.18 gi|352681296|ref|YP_004891820.1| - 0.082 12.4 0.9 3.3 7.2 0.2 2.5 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_28 PF13521.6 gi|352681296|ref|YP_004891820.1| - 0.13 12.5 0.2 31 4.8 0.0 3.0 3 0 0 3 3 2 0 AAA domain NTPase_1 PF03266.15 gi|352681296|ref|YP_004891820.1| - 0.19 11.6 2.1 6 6.8 0.1 2.9 3 0 0 3 3 2 0 NTPase Roc PF08477.13 gi|352681296|ref|YP_004891820.1| - 0.2 11.9 0.9 10 6.4 0.1 2.6 3 0 0 3 3 2 0 Ras of Complex, Roc, domain of DAPkinase MobB PF03205.14 gi|352681296|ref|YP_004891820.1| - 0.22 11.4 0.4 26 4.7 0.0 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|352681296|ref|YP_004891820.1| - 0.27 11.6 2.3 49 4.2 0.2 3.5 3 1 0 3 3 3 0 AAA domain CbiQ PF02361.16 gi|352681297|ref|YP_004891821.1| - 1.1e-16 61.2 15.6 1.1e-16 61.2 15.6 1.7 2 1 0 2 2 2 1 Cobalt transport protein DUF1673 PF07895.11 gi|352681297|ref|YP_004891821.1| - 7 6.3 8.6 1.3 8.7 3.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1673) Sugar_tr PF00083.24 gi|352681298|ref|YP_004891822.1| - 6.6e-53 180.2 16.8 8.9e-53 179.7 16.8 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|352681298|ref|YP_004891822.1| - 7.1e-28 97.5 34.9 7.1e-28 97.5 34.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Oxidored_q6 PF01058.22 gi|352681299|ref|YP_004891823.1| - 2.9e-25 88.6 0.1 4.2e-25 88.1 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Glyco_transf_43 PF03360.16 gi|352681299|ref|YP_004891823.1| - 0.0052 16.6 0.4 0.021 14.7 0.4 1.8 1 1 0 1 1 1 1 Glycosyltransferase family 43 Complex1_30kDa PF00329.19 gi|352681300|ref|YP_004891824.1| - 1.4e-30 106.4 0.0 1.8e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Unstab_antitox PF09720.10 gi|352681301|ref|YP_004891825.1| - 0.05 13.7 1.0 0.084 12.9 1.0 1.3 1 0 0 1 1 1 0 Putative addiction module component MerE PF05052.12 gi|352681302|ref|YP_004891826.1| - 0.11 12.4 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 MerE protein Rad50_zn_hook PF04423.14 gi|352681302|ref|YP_004891826.1| - 0.19 11.6 2.4 3.1 7.7 0.6 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif PMT_2 PF13231.6 gi|352681303|ref|YP_004891827.1| - 1e-07 32.3 9.6 1e-07 32.3 9.6 3.6 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Molybdopterin PF00384.22 gi|352681304|ref|YP_004891828.1| - 1.9e-50 172.1 0.0 1.5e-49 169.2 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|352681304|ref|YP_004891828.1| - 7.3e-11 42.1 0.0 1.5e-10 41.1 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|352681304|ref|YP_004891828.1| - 0.0022 18.0 0.1 0.004 17.1 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|352681304|ref|YP_004891828.1| - 0.011 15.9 0.0 0.044 14.0 0.0 1.9 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain Fer4_11 PF13247.6 gi|352681305|ref|YP_004891829.1| - 1.6e-18 66.7 9.3 1.6e-18 66.7 9.3 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681305|ref|YP_004891829.1| - 3.8e-16 58.4 30.7 9.8e-07 28.6 1.4 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|352681305|ref|YP_004891829.1| - 1.6e-15 57.4 23.2 3.2e-08 34.0 6.7 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352681305|ref|YP_004891829.1| - 2.6e-14 52.3 31.6 6e-07 29.0 1.4 5.0 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|352681305|ref|YP_004891829.1| - 4e-11 42.3 30.5 0.00022 21.1 1.3 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352681305|ref|YP_004891829.1| - 7e-09 35.7 31.4 0.00013 22.0 7.5 4.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352681305|ref|YP_004891829.1| - 7.3e-09 35.7 27.9 8.4e-05 22.7 10.7 3.5 1 1 4 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352681305|ref|YP_004891829.1| - 5.3e-08 33.7 24.9 0.08 13.9 0.4 4.1 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|352681305|ref|YP_004891829.1| - 5.9e-05 23.4 27.8 0.001 19.5 9.2 3.5 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352681305|ref|YP_004891829.1| - 8.5e-05 23.0 25.9 0.19 12.3 4.8 4.1 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|352681305|ref|YP_004891829.1| - 0.0002 21.4 32.1 0.047 13.8 8.9 3.6 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681305|ref|YP_004891829.1| - 0.00027 21.2 37.7 0.018 15.5 3.9 4.8 4 2 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|352681305|ref|YP_004891829.1| - 0.00048 20.9 44.9 0.068 14.1 5.2 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|352681305|ref|YP_004891829.1| - 0.099 12.8 27.0 0.42 10.8 2.9 3.6 1 1 3 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352681305|ref|YP_004891829.1| - 0.17 12.6 0.8 0.17 12.6 0.8 3.5 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|352681305|ref|YP_004891829.1| - 1.3 10.0 20.3 0.89 10.4 0.3 3.7 3 1 1 4 4 4 0 4Fe-4S dicluster domain NrfD PF03916.14 gi|352681306|ref|YP_004891830.1| - 1.7e-17 64.1 25.2 1.7e-17 64.1 25.2 1.7 2 0 0 2 2 2 1 Polysulphide reductase, NrfD IF-2B PF01008.17 gi|352681307|ref|YP_004891831.1| - 1.9e-09 37.2 0.0 2.9e-09 36.6 0.0 1.4 1 1 0 1 1 1 1 Initiation factor 2 subunit family Lactamase_B PF00753.27 gi|352681308|ref|YP_004891832.1| - 8.3e-10 39.0 0.4 1.5e-09 38.2 0.4 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|352681308|ref|YP_004891832.1| - 4.5e-07 29.6 0.0 7.8e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|352681308|ref|YP_004891832.1| - 0.019 14.9 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Amidohydro_1 PF01979.20 gi|352681309|ref|YP_004891833.1| - 0.00056 19.3 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase family PseudoU_synth_1 PF01416.20 gi|352681310|ref|YP_004891834.1| - 7.9e-17 61.7 0.0 2.4e-16 60.1 0.0 1.8 2 0 0 2 2 2 1 tRNA pseudouridine synthase DUF478 PF04334.12 gi|352681310|ref|YP_004891834.1| - 0.15 12.2 0.8 2 8.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF478) Molydop_binding PF01568.21 gi|352681312|ref|YP_004891836.1| - 0.0067 16.4 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain HAS-barrel PF09378.10 gi|352681312|ref|YP_004891836.1| - 0.011 15.8 0.1 0.02 15.1 0.1 1.5 1 1 0 1 1 1 0 HAS barrel domain SAP PF02037.27 gi|352681312|ref|YP_004891836.1| - 0.11 12.3 0.2 13 5.6 0.0 3.2 3 0 0 3 3 3 0 SAP domain TOBE PF03459.17 gi|352681312|ref|YP_004891836.1| - 0.16 12.3 1.1 6.7 7.1 0.0 3.2 3 1 0 3 3 3 0 TOBE domain SBP_bac_5 PF00496.22 gi|352681313|ref|YP_004891837.1| - 1.2e-90 304.2 0.5 1.6e-90 303.9 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC2_membrane_2 PF12679.7 gi|352681313|ref|YP_004891837.1| - 0.13 11.5 3.1 0.25 10.6 3.1 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein PRD1_DD PF11087.8 gi|352681313|ref|YP_004891837.1| - 0.83 9.4 5.5 2.3 7.9 5.5 1.7 1 0 0 1 1 1 0 PRD1 phage membrane DNA delivery BPD_transp_1 PF00528.22 gi|352681314|ref|YP_004891838.1| - 1.7e-21 76.8 12.6 1.7e-21 76.8 12.6 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF373 PF04123.13 gi|352681314|ref|YP_004891838.1| - 1.5 8.2 7.7 1.2 8.5 5.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF373) BPD_transp_1 PF00528.22 gi|352681315|ref|YP_004891839.1| - 2.1e-37 128.6 16.1 2.1e-37 128.6 16.1 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2063 PF09836.9 gi|352681315|ref|YP_004891839.1| - 0.044 14.0 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding domain ABC_tran PF00005.27 gi|352681316|ref|YP_004891840.1| - 1.7e-25 90.1 0.0 2.4e-25 89.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|352681316|ref|YP_004891840.1| - 3.2e-20 72.4 0.0 5.2e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|352681316|ref|YP_004891840.1| - 1e-08 34.9 0.8 1.4e-07 31.2 0.8 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|352681316|ref|YP_004891840.1| - 1.2e-08 35.2 1.5 2.8e-05 24.1 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|352681316|ref|YP_004891840.1| - 0.00042 20.0 0.1 0.00089 19.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|352681316|ref|YP_004891840.1| - 0.00099 19.5 0.1 0.0025 18.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|352681316|ref|YP_004891840.1| - 0.0064 16.8 0.1 0.036 14.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|352681316|ref|YP_004891840.1| - 0.021 14.6 0.2 0.22 11.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|352681316|ref|YP_004891840.1| - 0.036 14.0 0.1 0.077 12.9 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase Rad51 PF08423.11 gi|352681316|ref|YP_004891840.1| - 0.079 12.2 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Rad51 APS_kinase PF01583.20 gi|352681316|ref|YP_004891840.1| - 0.17 11.8 0.1 1.9 8.3 0.0 2.3 1 1 1 2 2 2 0 Adenylylsulphate kinase AAA_13 PF13166.6 gi|352681316|ref|YP_004891840.1| - 0.21 10.2 0.0 0.53 8.9 0.1 1.5 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|352681316|ref|YP_004891840.1| - 0.24 11.9 0.0 0.34 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Diphthami_syn_2 PF01902.17 gi|352681318|ref|YP_004891842.1| - 5.3e-57 192.8 0.0 5.9e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase DNA_photolyase PF00875.18 gi|352681318|ref|YP_004891842.1| - 0.063 13.3 0.1 0.19 11.7 0.1 1.8 1 1 0 1 1 1 0 DNA photolyase CRM1_repeat PF18777.1 gi|352681318|ref|YP_004891842.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 Chromosome region maintenance or exportin repeat DSPc PF00782.20 gi|352681319|ref|YP_004891843.1| - 1.4e-09 37.9 0.0 1.8e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|352681319|ref|YP_004891843.1| - 2.8e-06 27.1 0.0 3.3e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|352681319|ref|YP_004891843.1| - 0.0034 17.1 0.0 0.0049 16.6 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.6 gi|352681319|ref|YP_004891843.1| - 0.0048 17.0 0.0 0.0065 16.6 0.0 1.3 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.6 gi|352681319|ref|YP_004891843.1| - 0.011 15.7 0.0 0.055 13.4 0.0 1.9 1 1 0 1 1 1 0 Tyrosine phosphatase family DUF72 PF01904.18 gi|352681320|ref|YP_004891844.1| - 6.4e-47 160.5 2.0 7.9e-47 160.2 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Aldo_ket_red PF00248.21 gi|352681321|ref|YP_004891845.1| - 6.2e-78 262.0 0.0 7e-78 261.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family OTCace PF00185.24 gi|352681322|ref|YP_004891846.1| - 8.9e-53 178.6 0.0 8.9e-52 175.3 0.0 2.0 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|352681322|ref|YP_004891846.1| - 1.7e-44 151.4 0.2 3.8e-44 150.3 0.1 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XdhC_C PF13478.6 gi|352681322|ref|YP_004891846.1| - 0.032 14.7 0.0 0.31 11.6 0.0 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain DUF1453 PF07301.11 gi|352681322|ref|YP_004891846.1| - 0.044 13.8 0.1 0.067 13.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1453) HIT PF01230.23 gi|352681324|ref|YP_004891848.1| - 3.1e-23 82.3 0.0 5.5e-23 81.5 0.0 1.3 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|352681324|ref|YP_004891848.1| - 3e-14 53.5 0.4 1.5e-13 51.2 0.4 1.9 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding DUF2313 PF10076.9 gi|352681324|ref|YP_004891848.1| - 0.077 12.9 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2313) MaoC_dehydratas PF01575.19 gi|352681325|ref|YP_004891849.1| - 1.9e-28 98.5 0.0 2.3e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|352681325|ref|YP_004891849.1| - 1.2e-05 25.5 0.0 2.6e-05 24.4 0.0 1.6 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|352681325|ref|YP_004891849.1| - 0.00094 19.5 0.2 0.0031 17.8 0.2 1.9 1 1 0 1 1 1 1 Thioesterase superfamily TP_methylase PF00590.20 gi|352681326|ref|YP_004891850.1| - 6.7e-29 101.4 0.3 8.2e-29 101.1 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GTP_EFTU_D4 PF14578.6 gi|352681327|ref|YP_004891851.1| - 1e-36 124.7 8.3 1.3e-36 124.4 4.3 3.0 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|352681327|ref|YP_004891851.1| - 1.1e-26 93.6 0.0 2.7e-26 92.3 0.0 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|352681327|ref|YP_004891851.1| - 4.2e-17 62.2 0.0 1e-16 61.0 0.0 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|352681327|ref|YP_004891851.1| - 2.4e-14 53.5 9.0 7.7e-09 35.8 0.4 2.7 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|352681327|ref|YP_004891851.1| - 0.00011 22.3 0.0 0.00025 21.1 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|352681327|ref|YP_004891851.1| - 0.086 13.1 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase FlgO PF17680.1 gi|352681327|ref|YP_004891851.1| - 0.12 12.0 0.0 0.32 10.7 0.0 1.6 1 0 0 1 1 1 0 FlgO protein DUF2934 PF11154.8 gi|352681328|ref|YP_004891852.1| - 0.18 11.5 0.2 0.32 10.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2934) Phtf-FEM1B_bdg PF12129.8 gi|352681328|ref|YP_004891852.1| - 0.79 9.5 4.4 0.32 10.8 1.9 1.6 2 0 0 2 2 2 0 Male germ-cell putative homeodomain transcription factor DUF4405 PF14358.6 gi|352681328|ref|YP_004891852.1| - 1.5 9.4 14.4 0.17 12.5 2.1 3.4 2 1 1 3 3 3 0 Domain of unknown function (DUF4405) Voltage_CLC PF00654.20 gi|352681329|ref|YP_004891853.1| - 3.4e-64 217.3 36.8 3.4e-64 217.3 36.8 1.7 1 1 1 2 2 2 1 Voltage gated chloride channel Ribosomal_S6e PF01092.19 gi|352681330|ref|YP_004891854.1| - 2.5e-29 101.8 0.0 3.3e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e AsnC_trans_reg PF01037.21 gi|352681331|ref|YP_004891855.1| - 1.2e-15 57.2 0.2 1.3e-15 57.1 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|352681331|ref|YP_004891855.1| - 0.084 12.9 0.2 0.12 12.5 0.2 1.2 1 0 0 1 1 1 0 NapD protein DUF2795 PF11387.8 gi|352681331|ref|YP_004891855.1| - 0.13 12.5 0.1 0.35 11.1 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) UbiA PF01040.18 gi|352681332|ref|YP_004891856.1| - 1.1e-43 149.3 26.8 1.4e-43 149.1 26.8 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4190 PF13828.6 gi|352681332|ref|YP_004891856.1| - 3.1 7.6 11.6 0.31 10.8 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4190) adh_short_C2 PF13561.6 gi|352681335|ref|YP_004891859.1| - 7.2e-55 186.1 3.5 8.6e-55 185.8 3.5 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|352681335|ref|YP_004891859.1| - 8.8e-53 178.7 2.4 1.2e-52 178.2 2.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|352681335|ref|YP_004891859.1| - 1.3e-08 35.0 0.7 1.7e-08 34.6 0.7 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|352681335|ref|YP_004891859.1| - 7.1e-05 22.4 0.4 0.00033 20.2 0.3 2.0 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.17 gi|352681335|ref|YP_004891859.1| - 0.084 13.5 2.7 0.12 12.9 0.5 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF402 PF04167.13 gi|352681336|ref|YP_004891860.1| - 1e-12 48.0 0.1 1.7e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|352681336|ref|YP_004891860.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease E/G family SurE PF01975.17 gi|352681337|ref|YP_004891861.1| - 2.8e-40 138.2 0.4 3.5e-40 137.9 0.4 1.1 1 0 0 1 1 1 1 Survival protein SurE MFS_1 PF07690.16 gi|352681338|ref|YP_004891862.1| - 4.8e-31 108.0 46.0 1.6e-22 79.9 24.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|352681338|ref|YP_004891862.1| - 0.00086 18.3 18.0 0.037 12.9 18.0 2.4 1 1 0 1 1 1 1 MFS_1 like family Sugar_tr PF00083.24 gi|352681338|ref|YP_004891862.1| - 0.0026 16.7 3.2 0.0026 16.7 3.2 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter ATP-synt_S1 PF05827.12 gi|352681338|ref|YP_004891862.1| - 0.084 12.7 0.2 0.21 11.4 0.2 1.6 1 0 0 1 1 1 0 Vacuolar ATP synthase subunit S1 (ATP6S1) CstA PF02554.14 gi|352681342|ref|YP_004891866.1| - 3.6e-84 282.8 27.4 3.6e-84 282.8 27.4 2.4 1 1 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|352681342|ref|YP_004891866.1| - 3.4e-20 72.6 9.4 3.4e-20 72.6 9.4 3.8 4 1 0 4 4 4 1 5TM C-terminal transporter carbon starvation CstA DUF3981 PF13139.6 gi|352681342|ref|YP_004891866.1| - 0.066 13.6 4.2 0.31 11.4 4.2 2.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3981) ArsA_ATPase PF02374.15 gi|352681344|ref|YP_004891868.1| - 2e-70 237.4 0.0 2.3e-70 237.2 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|352681344|ref|YP_004891868.1| - 8.8e-14 51.7 0.0 4.1e-13 49.5 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|352681344|ref|YP_004891868.1| - 5.4e-12 46.0 0.1 1.5e-11 44.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|352681344|ref|YP_004891868.1| - 1.1e-10 41.4 2.7 0.00013 21.5 0.0 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|352681344|ref|YP_004891868.1| - 0.00046 19.7 0.1 0.0031 17.0 0.0 2.5 3 0 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family XPB_DRD PF18458.1 gi|352681344|ref|YP_004891868.1| - 0.0012 18.7 0.3 0.0042 16.9 0.1 2.0 3 0 0 3 3 1 1 Xeroderma pigmentosum group B helicase damage recognition domain Thioredoxin_7 PF13899.6 gi|352681344|ref|YP_004891868.1| - 0.0072 16.5 0.0 0.017 15.3 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like VirC1 PF07015.11 gi|352681344|ref|YP_004891868.1| - 0.019 14.3 0.0 0.047 13.0 0.0 1.7 2 0 0 2 2 2 0 VirC1 protein NB-ARC PF00931.22 gi|352681344|ref|YP_004891868.1| - 0.033 13.4 0.3 0.14 11.3 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.6 gi|352681344|ref|YP_004891868.1| - 0.059 12.9 0.0 0.16 11.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|352681344|ref|YP_004891868.1| - 0.099 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain DnaB_C PF03796.15 gi|352681344|ref|YP_004891868.1| - 0.12 11.6 0.0 0.61 9.4 0.0 1.8 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain PhoH PF02562.16 gi|352681344|ref|YP_004891868.1| - 0.13 11.7 5.5 5.8 6.3 2.7 3.9 3 1 0 3 3 3 0 PhoH-like protein YjeF_N PF03853.15 gi|352681344|ref|YP_004891868.1| - 0.16 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 YjeF-related protein N-terminus ArsA_ATPase PF02374.15 gi|352681345|ref|YP_004891869.1| - 1.7e-60 204.8 0.1 1.9e-60 204.6 0.1 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|352681345|ref|YP_004891869.1| - 1.6e-12 47.4 1.1 7.1e-07 28.9 0.0 2.4 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|352681345|ref|YP_004891869.1| - 3.9e-10 39.9 0.0 6.1e-10 39.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|352681345|ref|YP_004891869.1| - 3.5e-06 27.0 0.0 7.4e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|352681345|ref|YP_004891869.1| - 0.0036 16.8 0.0 0.0082 15.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|352681345|ref|YP_004891869.1| - 0.013 15.0 0.0 0.019 14.4 0.0 1.4 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ PIF1 PF05970.14 gi|352681345|ref|YP_004891869.1| - 0.045 12.9 0.1 0.077 12.1 0.1 1.4 1 0 0 1 1 1 0 PIF1-like helicase AAA_26 PF13500.6 gi|352681345|ref|YP_004891869.1| - 0.074 12.9 0.1 2.7 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain Thioredoxin_3 PF13192.6 gi|352681349|ref|YP_004891873.1| - 0.0039 17.2 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin domain Radical_SAM PF04055.21 gi|352681350|ref|YP_004891874.1| - 1.2e-24 87.5 0.0 3.6e-24 86.0 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|352681350|ref|YP_004891874.1| - 4.6e-09 36.6 0.2 1.3e-08 35.2 0.2 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|352681350|ref|YP_004891874.1| - 1.6e-07 31.7 0.0 3.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|352681350|ref|YP_004891874.1| - 3.5e-06 27.1 0.0 5.7e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|352681350|ref|YP_004891874.1| - 5.1e-05 22.8 0.0 0.012 15.0 0.0 2.4 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel Peptidase_M20 PF01546.28 gi|352681351|ref|YP_004891875.1| - 4.2e-24 85.4 0.0 5.7e-24 85.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|352681351|ref|YP_004891875.1| - 2.6e-12 46.6 0.0 4.8e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Semialdhyde_dh PF01118.24 gi|352681353|ref|YP_004891877.1| - 1.8e-32 112.3 0.0 3e-32 111.6 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|352681353|ref|YP_004891877.1| - 1.9e-11 44.4 0.0 3.7e-11 43.4 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|352681353|ref|YP_004891877.1| - 0.038 14.1 0.0 0.069 13.3 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|352681353|ref|YP_004891877.1| - 0.096 13.5 0.0 0.31 11.9 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.21 gi|352681353|ref|YP_004891877.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AA_kinase PF00696.28 gi|352681354|ref|YP_004891878.1| - 6.1e-28 98.0 1.8 7.5e-28 97.7 1.8 1.1 1 0 0 1 1 1 1 Amino acid kinase family HypA PF01155.19 gi|352681355|ref|YP_004891879.1| - 2.6e-06 27.4 0.5 2.8e-06 27.3 0.5 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|352681355|ref|YP_004891879.1| - 0.00027 21.0 1.1 0.00051 20.1 1.2 1.4 1 1 0 1 1 1 1 Zinc ribbon domain zf-UDP PF14569.6 gi|352681355|ref|YP_004891879.1| - 0.00065 19.8 1.6 0.72 10.0 0.1 2.1 1 1 1 2 2 2 2 Zinc-binding RING-finger TF_Zn_Ribbon PF08271.12 gi|352681355|ref|YP_004891879.1| - 0.0013 18.2 4.6 0.0037 16.7 4.0 2.0 1 1 1 2 2 2 2 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|352681355|ref|YP_004891879.1| - 0.0021 18.0 2.4 0.0044 16.9 2.4 1.5 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-IS66 PF13005.7 gi|352681355|ref|YP_004891879.1| - 0.004 17.5 1.1 0.35 11.3 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 PhnA_Zn_Ribbon PF08274.12 gi|352681355|ref|YP_004891879.1| - 0.005 16.8 0.3 0.0089 16.0 0.3 1.4 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DUF1451 PF07295.11 gi|352681355|ref|YP_004891879.1| - 0.0088 16.1 0.3 0.013 15.5 0.1 1.4 2 0 0 2 2 1 1 Zinc-ribbon containing domain DZR PF12773.7 gi|352681355|ref|YP_004891879.1| - 0.011 15.7 0.4 0.017 15.1 0.4 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_3 PF13878.6 gi|352681355|ref|YP_004891879.1| - 0.018 14.9 0.8 0.87 9.5 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_ligase_ZBD PF03119.16 gi|352681355|ref|YP_004891879.1| - 0.02 14.9 2.4 2.1 8.4 0.2 2.4 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_ribbon_SprT PF17283.2 gi|352681355|ref|YP_004891879.1| - 0.023 14.6 0.9 1.4 8.9 0.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|352681355|ref|YP_004891879.1| - 0.023 14.1 0.5 1.4 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|352681355|ref|YP_004891879.1| - 0.031 14.2 1.7 0.47 10.4 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|352681355|ref|YP_004891879.1| - 0.032 14.0 0.5 0.19 11.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.12 gi|352681355|ref|YP_004891879.1| - 0.033 14.0 4.1 0.27 11.0 4.1 2.0 1 1 0 1 1 1 0 HypF finger zf-CHCC PF10276.9 gi|352681355|ref|YP_004891879.1| - 0.036 14.1 0.3 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger domain Nudix_N_2 PF14803.6 gi|352681355|ref|YP_004891879.1| - 0.042 13.8 0.9 6 6.9 0.1 2.4 2 1 0 2 2 2 0 Nudix N-terminal ADK_lid PF05191.14 gi|352681355|ref|YP_004891879.1| - 0.058 13.4 0.2 11 6.1 0.0 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Cas_CXXC_CXXC PF09706.10 gi|352681355|ref|YP_004891879.1| - 0.068 13.4 0.4 0.27 11.5 0.0 1.9 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) T4_baseplate PF12322.8 gi|352681355|ref|YP_004891879.1| - 0.094 12.2 0.3 4.5 6.7 0.0 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein Zn_Tnp_IS1595 PF12760.7 gi|352681355|ref|YP_004891879.1| - 0.095 12.7 0.1 2.4 8.2 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|352681355|ref|YP_004891879.1| - 0.1 12.4 1.7 0.56 10.0 1.7 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|352681355|ref|YP_004891879.1| - 0.11 12.1 0.5 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF4776 PF16003.5 gi|352681355|ref|YP_004891879.1| - 0.15 11.0 0.1 0.16 11.0 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) zinc_ribbon_2 PF13240.6 gi|352681355|ref|YP_004891879.1| - 0.17 11.7 3.9 7.7 6.4 3.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-CSL PF05207.13 gi|352681355|ref|YP_004891879.1| - 0.22 11.2 2.4 0.22 11.3 0.3 1.9 2 0 0 2 2 2 0 CSL zinc finger zf-HIT PF04438.16 gi|352681355|ref|YP_004891879.1| - 1 9.3 6.3 3.2 7.7 1.4 2.1 2 0 0 2 2 2 0 HIT zinc finger Arginosuc_synth PF00764.19 gi|352681356|ref|YP_004891880.1| - 7.5e-150 499.5 0.0 9.2e-150 499.2 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase LIM PF00412.22 gi|352681357|ref|YP_004891881.1| - 0.01 16.1 2.2 0.011 15.9 2.2 1.1 1 0 0 1 1 1 0 LIM domain Sgf11 PF08209.11 gi|352681357|ref|YP_004891881.1| - 0.011 15.3 0.6 0.011 15.3 0.6 3.0 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf_UBZ PF18439.1 gi|352681357|ref|YP_004891881.1| - 0.022 14.3 5.9 0.86 9.2 0.6 2.4 2 1 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|352681357|ref|YP_004891881.1| - 0.026 14.2 5.2 1.7 8.5 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|352681357|ref|YP_004891881.1| - 0.032 14.4 3.1 0.86 9.8 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|352681357|ref|YP_004891881.1| - 0.033 14.2 5.2 0.26 11.3 5.2 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|352681357|ref|YP_004891881.1| - 0.045 13.2 8.7 0.39 10.2 1.9 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rad50_zn_hook PF04423.14 gi|352681357|ref|YP_004891881.1| - 0.052 13.4 5.5 2.7 7.9 1.2 2.1 2 0 0 2 2 2 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.12 gi|352681357|ref|YP_004891881.1| - 0.13 11.8 6.5 1.9 8.1 0.6 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|352681357|ref|YP_004891881.1| - 0.13 12.0 6.5 0.79 9.5 6.5 1.9 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF2256 PF10013.9 gi|352681357|ref|YP_004891881.1| - 0.16 12.1 8.1 0.31 11.2 8.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-HYPF PF07503.12 gi|352681357|ref|YP_004891881.1| - 0.28 11.0 7.5 4.8 7.0 7.6 2.2 1 1 0 1 1 1 0 HypF finger Zn_Tnp_IS1595 PF12760.7 gi|352681357|ref|YP_004891881.1| - 0.31 11.1 9.9 1.2 9.2 0.9 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|352681357|ref|YP_004891881.1| - 0.42 10.9 6.3 0.49 10.7 1.9 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family CpXC PF14353.6 gi|352681357|ref|YP_004891881.1| - 0.49 10.4 4.4 6.6 6.8 0.2 2.1 1 1 1 2 2 2 0 CpXC protein zf_C2H2_10 PF18414.1 gi|352681357|ref|YP_004891881.1| - 1.2 8.8 5.4 1.2 8.8 0.6 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-Mss51 PF13824.6 gi|352681357|ref|YP_004891881.1| - 1.3 9.2 6.3 33 4.7 6.8 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2688 PF10892.8 gi|352681357|ref|YP_004891881.1| - 2.6 7.6 6.8 2.8 7.5 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) Iso_dh PF00180.20 gi|352681359|ref|YP_004891883.1| - 6.4e-94 314.9 0.4 7.6e-94 314.7 0.4 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|352681359|ref|YP_004891883.1| - 0.074 12.5 0.1 0.16 11.3 0.1 1.5 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA H2O2_YaaD PF03883.14 gi|352681360|ref|YP_004891884.1| - 0.0082 15.7 0.0 0.0092 15.5 0.0 1.2 1 0 0 1 1 1 1 Peroxide stress protein YaaA HMGL-like PF00682.19 gi|352681361|ref|YP_004891885.1| - 1.4e-72 244.5 1.2 3.3e-71 239.9 0.9 2.3 2 0 0 2 2 2 1 HMGL-like AsnC_trans_reg PF01037.21 gi|352681361|ref|YP_004891885.1| - 2.8e-14 52.8 0.5 2.8e-14 52.8 0.5 2.1 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain DUF881 PF05949.12 gi|352681361|ref|YP_004891885.1| - 0.005 16.7 0.8 0.43 10.4 0.1 2.7 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF881) CinA_KH PF18146.1 gi|352681361|ref|YP_004891885.1| - 0.054 13.6 0.4 2.3 8.4 0.1 2.9 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain ACT_4 PF13291.6 gi|352681361|ref|YP_004891885.1| - 0.099 13.2 1.0 0.42 11.2 0.3 2.5 2 1 1 3 3 3 0 ACT domain TRAPP PF04051.16 gi|352681361|ref|YP_004891885.1| - 0.13 12.0 0.1 0.31 10.8 0.1 1.5 1 0 0 1 1 1 0 Transport protein particle (TRAPP) component AlkA_N PF06029.11 gi|352681361|ref|YP_004891885.1| - 0.29 11.4 3.0 3.4 8.0 0.1 2.8 3 0 0 3 3 3 0 AlkA N-terminal domain DUF2666 PF10869.8 gi|352681361|ref|YP_004891885.1| - 0.65 10.2 4.5 15 5.8 0.3 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2666) Aconitase_C PF00694.19 gi|352681362|ref|YP_004891886.1| - 2.5e-17 63.4 0.0 3e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|352681362|ref|YP_004891886.1| - 0.008 15.8 0.3 0.43 10.2 0.0 2.1 1 1 1 2 2 2 2 Aconitate hydratase 2 N-terminus TPP_enzyme_N PF02776.18 gi|352681363|ref|YP_004891887.1| - 2.8e-49 167.0 0.2 1e-48 165.2 0.2 2.0 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|352681363|ref|YP_004891887.1| - 1.6e-47 160.7 0.1 3e-46 156.6 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|352681363|ref|YP_004891887.1| - 3.1e-42 144.0 0.0 4.1e-41 140.3 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HGD-D PF06050.13 gi|352681363|ref|YP_004891887.1| - 0.013 15.2 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component POR_N PF01855.19 gi|352681363|ref|YP_004891887.1| - 0.039 13.7 1.0 0.089 12.5 1.0 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Molybdopterin PF00384.22 gi|352681363|ref|YP_004891887.1| - 0.073 12.0 0.0 0.1 11.5 0.0 1.1 1 0 0 1 1 1 0 Molybdopterin oxidoreductase ACT_5 PF13710.6 gi|352681364|ref|YP_004891888.1| - 4.8e-12 45.5 0.1 5.7e-12 45.3 0.1 1.1 1 0 0 1 1 1 1 ACT domain IlvN PF07991.12 gi|352681365|ref|YP_004891889.1| - 7e-74 246.9 0.1 1.5e-73 245.8 0.0 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|352681365|ref|YP_004891889.1| - 4.8e-53 179.3 0.1 6.6e-53 178.9 0.1 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|352681365|ref|YP_004891889.1| - 2.2e-07 31.3 0.0 6.1e-07 29.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|352681365|ref|YP_004891889.1| - 2.6e-07 30.2 0.0 5e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|352681365|ref|YP_004891889.1| - 2.2e-05 24.7 0.0 4.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|352681365|ref|YP_004891889.1| - 8e-05 22.8 0.0 0.00016 21.8 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|352681365|ref|YP_004891889.1| - 0.15 11.7 0.1 0.34 10.5 0.1 1.7 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Aminotran_4 PF01063.19 gi|352681366|ref|YP_004891890.1| - 2.9e-53 181.0 0.0 3.5e-53 180.8 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV DUF2635 PF10948.8 gi|352681366|ref|YP_004891890.1| - 0.084 12.6 0.0 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) HMGL-like PF00682.19 gi|352681367|ref|YP_004891891.1| - 5.6e-87 291.6 4.8 7e-87 291.3 4.8 1.1 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|352681367|ref|YP_004891891.1| - 0.0011 18.5 0.9 0.0031 17.0 0.9 2.0 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel PTE PF02126.18 gi|352681367|ref|YP_004891891.1| - 0.0029 17.1 0.2 0.8 9.1 0.0 2.2 1 1 0 2 2 2 2 Phosphotriesterase family Glyco_hydro_97 PF10566.9 gi|352681367|ref|YP_004891891.1| - 0.0045 16.3 0.1 0.0068 15.7 0.1 1.2 1 0 0 1 1 1 1 Glycoside hydrolase 97 Pro_dh PF01619.18 gi|352681367|ref|YP_004891891.1| - 0.094 12.2 0.4 0.2 11.2 0.2 1.6 2 0 0 2 2 2 0 Proline dehydrogenase GDPD_2 PF13653.6 gi|352681367|ref|YP_004891891.1| - 0.16 12.4 0.1 38 4.9 0.0 2.7 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Cyclase PF04199.13 gi|352681368|ref|YP_004891892.1| - 1.2e-29 103.2 0.0 1.7e-29 102.8 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Aconitase PF00330.20 gi|352681369|ref|YP_004891893.1| - 1.9e-74 251.3 5.0 5.7e-72 243.2 5.0 2.7 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|352681369|ref|YP_004891893.1| - 0.00039 19.2 0.0 0.00057 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) CoA_transf_3 PF02515.17 gi|352681370|ref|YP_004891894.1| - 1.8e-90 303.8 0.0 2.1e-90 303.5 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III CoA_transf_3 PF02515.17 gi|352681371|ref|YP_004891895.1| - 1.5e-52 178.9 0.0 1.8e-52 178.7 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III TRAM_2 PF18693.1 gi|352681371|ref|YP_004891895.1| - 0.15 12.3 0.0 2.2 8.5 0.0 2.4 1 1 1 2 2 2 0 TRAM domain CoA_trans PF01144.23 gi|352681372|ref|YP_004891896.1| - 3.2e-38 131.3 0.1 1.8e-33 115.8 0.0 2.7 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|352681372|ref|YP_004891896.1| - 0.00089 17.7 0.0 0.0016 16.8 0.0 1.3 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter PALP PF00291.25 gi|352681374|ref|YP_004891898.1| - 4.6e-19 68.9 3.4 7.7e-08 32.1 1.9 3.2 2 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme TrmB PF01978.19 gi|352681374|ref|YP_004891898.1| - 0.001 18.9 0.2 0.019 14.9 0.0 2.7 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|352681374|ref|YP_004891898.1| - 0.026 14.8 0.0 0.065 13.6 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor PadR PF03551.14 gi|352681374|ref|YP_004891898.1| - 0.033 14.1 0.1 0.92 9.5 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family Cyt_bd_oxida_I PF01654.17 gi|352681375|ref|YP_004891899.1| - 5.8e-64 216.3 28.8 7.4e-63 212.6 28.8 2.0 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Phage_holin_2_1 PF04971.12 gi|352681375|ref|YP_004891899.1| - 0.41 10.7 0.0 0.41 10.7 0.0 3.3 4 1 1 5 5 5 0 Bacteriophage P21 holin S Cyt_bd_oxida_I PF01654.17 gi|352681376|ref|YP_004891900.1| - 1.3e-16 60.2 12.7 1.3e-16 60.2 12.7 2.3 2 1 0 2 2 2 1 Cytochrome bd terminal oxidase subunit I DUF2157 PF09925.9 gi|352681376|ref|YP_004891900.1| - 0.0067 16.2 0.4 0.0067 16.2 0.4 3.8 5 1 0 5 5 5 1 Predicted membrane protein (DUF2157) Cyt_bd_oxida_II PF02322.15 gi|352681376|ref|YP_004891900.1| - 0.0088 15.4 36.2 0.0097 15.3 21.4 2.6 1 1 1 2 2 2 2 Cytochrome bd terminal oxidase subunit II Thermopsin PF05317.11 gi|352681377|ref|YP_004891901.1| - 4.7e-26 91.8 0.0 1.2e-25 90.5 0.0 1.5 1 1 0 1 1 1 1 Thermopsin AhpC-TSA PF00578.21 gi|352681378|ref|YP_004891902.1| - 3.7e-26 91.5 0.0 4.9e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|352681378|ref|YP_004891902.1| - 3.3e-18 65.3 0.7 6.5e-18 64.3 0.7 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|352681378|ref|YP_004891902.1| - 1.9e-12 47.1 0.0 2.3e-12 46.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin Rubrerythrin PF02915.17 gi|352681379|ref|YP_004891903.1| - 2.8e-09 37.5 3.6 5.2e-09 36.6 3.6 1.4 1 0 0 1 1 1 1 Rubrerythrin VIT1 PF01988.19 gi|352681379|ref|YP_004891903.1| - 4.3e-09 36.6 28.0 1.7e-06 28.1 8.9 2.5 2 1 1 3 3 3 2 VIT family COQ7 PF03232.13 gi|352681379|ref|YP_004891903.1| - 0.00017 21.4 1.6 0.12 12.1 0.4 2.3 1 1 1 2 2 2 2 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.6 gi|352681379|ref|YP_004891903.1| - 0.043 14.0 0.1 0.043 14.0 0.1 2.5 2 1 0 2 2 2 0 Ferritin-like domain MpPF26 PF07666.11 gi|352681379|ref|YP_004891903.1| - 0.55 10.3 3.8 3.6 7.7 0.2 2.6 2 1 0 2 2 2 0 M penetrans paralogue family 26 3-alpha PF03475.14 gi|352681383|ref|YP_004891907.1| - 0.19 11.6 0.0 0.28 11.1 0.0 1.2 1 0 0 1 1 1 0 3-alpha domain Ribosomal_S30 PF04758.14 gi|352681384|ref|YP_004891908.1| - 3e-11 43.3 2.0 3.6e-11 43.1 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 HD_5 PF13487.6 gi|352681385|ref|YP_004891909.1| - 0.094 13.0 0.2 12 6.2 0.1 2.4 2 1 1 3 3 3 0 HD domain Acetyltransf_1 PF00583.25 gi|352681386|ref|YP_004891910.1| - 8e-15 55.1 0.0 1.6e-14 54.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|352681386|ref|YP_004891910.1| - 7e-08 33.2 0.1 1.1e-07 32.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|352681386|ref|YP_004891910.1| - 3.2e-07 30.7 0.0 6.6e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|352681386|ref|YP_004891910.1| - 8.6e-07 29.0 0.0 1.3e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|352681386|ref|YP_004891910.1| - 1.3e-05 25.3 0.1 0.00025 21.1 0.1 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|352681386|ref|YP_004891910.1| - 4.1e-05 23.5 0.0 7e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|352681386|ref|YP_004891910.1| - 4.8e-05 23.4 0.0 8.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|352681386|ref|YP_004891910.1| - 0.11 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|352681386|ref|YP_004891910.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Glyco_hydro_30C PF17189.4 gi|352681387|ref|YP_004891911.1| - 0.0039 17.4 0.5 0.052 13.8 0.4 2.5 2 0 0 2 2 2 1 Glycosyl hydrolase family 30 beta sandwich domain TarH PF02203.15 gi|352681387|ref|YP_004891911.1| - 0.034 14.1 1.4 0.056 13.4 1.4 1.2 1 0 0 1 1 1 0 Tar ligand binding domain homologue DHHC PF01529.20 gi|352681387|ref|YP_004891911.1| - 5.7 7.0 8.9 15 5.6 8.9 1.8 1 1 0 1 1 1 0 DHHC palmitoyltransferase SBP_bac_5 PF00496.22 gi|352681388|ref|YP_004891912.1| - 4.8e-13 48.8 10.8 1.4e-10 40.7 0.3 3.4 3 2 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|352681388|ref|YP_004891912.1| - 0.0012 18.8 5.7 0.0021 18.0 5.7 1.3 1 0 0 1 1 1 1 Rifin MG2 PF01835.19 gi|352681388|ref|YP_004891912.1| - 0.064 13.7 0.2 0.33 11.5 0.1 2.2 2 1 0 2 2 2 0 MG2 domain Stevor PF17410.2 gi|352681388|ref|YP_004891912.1| - 0.62 9.6 4.8 0.97 8.9 4.8 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame TMEM251 PF15190.6 gi|352681388|ref|YP_004891912.1| - 1 9.3 5.5 0.13 12.3 0.8 1.9 2 0 0 2 2 2 0 Transmembrane protein 251 DUF5305 PF17231.2 gi|352681388|ref|YP_004891912.1| - 5.9 6.2 9.2 9.6 5.5 9.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5305) BPD_transp_1 PF00528.22 gi|352681389|ref|YP_004891913.1| - 1.7e-24 86.6 15.7 1.7e-24 86.6 15.7 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|352681390|ref|YP_004891914.1| - 1.5e-22 80.2 20.0 1.5e-22 80.2 20.0 2.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3482 PF11981.8 gi|352681390|ref|YP_004891914.1| - 0.13 11.7 0.1 0.18 11.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) ABC_tran PF00005.27 gi|352681391|ref|YP_004891915.1| - 1.2e-31 110.0 0.0 1.7e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|352681391|ref|YP_004891915.1| - 7.3e-18 64.8 0.0 1.3e-17 64.0 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|352681391|ref|YP_004891915.1| - 2e-09 37.7 0.0 1.2e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TniB PF05621.11 gi|352681391|ref|YP_004891915.1| - 6.7e-07 28.9 0.4 0.00012 21.5 0.2 2.3 2 0 0 2 2 2 1 Bacterial TniB protein SMC_N PF02463.19 gi|352681391|ref|YP_004891915.1| - 2.5e-06 27.1 0.1 0.00044 19.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352681391|ref|YP_004891915.1| - 3.8e-05 24.0 0.1 0.018 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|352681391|ref|YP_004891915.1| - 0.00078 19.2 0.3 0.42 10.3 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein DUF87 PF01935.17 gi|352681391|ref|YP_004891915.1| - 0.00078 19.6 0.3 0.0015 18.6 0.1 1.5 2 0 0 2 2 1 1 Helicase HerA, central domain AAA_5 PF07728.14 gi|352681391|ref|YP_004891915.1| - 0.00081 19.4 0.1 0.0021 18.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|352681391|ref|YP_004891915.1| - 0.0013 19.1 0.0 0.0018 18.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|352681391|ref|YP_004891915.1| - 0.0019 18.1 0.3 0.009 15.9 0.0 2.0 2 0 0 2 2 2 1 NACHT domain AAA_23 PF13476.6 gi|352681391|ref|YP_004891915.1| - 0.0024 18.4 0.0 0.0039 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352681391|ref|YP_004891915.1| - 0.0025 17.5 0.1 0.0047 16.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|352681391|ref|YP_004891915.1| - 0.0049 15.7 0.6 0.049 12.4 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|352681391|ref|YP_004891915.1| - 0.0068 16.1 0.1 0.065 12.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.25 gi|352681391|ref|YP_004891915.1| - 0.0089 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.22 gi|352681391|ref|YP_004891915.1| - 0.016 14.9 0.0 4.8 6.8 0.0 2.7 2 1 1 3 3 3 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|352681391|ref|YP_004891915.1| - 0.029 14.0 0.1 0.048 13.2 0.1 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|352681391|ref|YP_004891915.1| - 0.035 14.0 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|352681391|ref|YP_004891915.1| - 0.041 12.5 0.0 4.2 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|352681391|ref|YP_004891915.1| - 0.041 13.6 0.0 0.094 12.4 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|352681391|ref|YP_004891915.1| - 0.058 12.7 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|352681391|ref|YP_004891915.1| - 0.06 13.7 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.6 gi|352681391|ref|YP_004891915.1| - 0.062 13.4 0.0 0.86 9.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain APS_kinase PF01583.20 gi|352681391|ref|YP_004891915.1| - 0.067 13.1 0.0 1.1 9.1 0.0 2.5 3 0 0 3 3 2 0 Adenylylsulphate kinase MMR_HSR1 PF01926.23 gi|352681391|ref|YP_004891915.1| - 0.073 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase DEAD PF00270.29 gi|352681391|ref|YP_004891915.1| - 0.077 12.8 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase DUF2791 PF10923.8 gi|352681391|ref|YP_004891915.1| - 0.08 11.8 0.0 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) Sigma54_activat PF00158.26 gi|352681391|ref|YP_004891915.1| - 0.084 12.6 0.4 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.22 gi|352681391|ref|YP_004891915.1| - 0.089 12.0 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain DNA_primase_lrg PF04104.14 gi|352681391|ref|YP_004891915.1| - 0.099 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit AAA_10 PF12846.7 gi|352681391|ref|YP_004891915.1| - 0.11 11.4 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.6 gi|352681391|ref|YP_004891915.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|352681392|ref|YP_004891916.1| - 3.5e-32 111.8 0.0 4.6e-32 111.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|352681392|ref|YP_004891916.1| - 2.4e-21 76.0 0.7 2.4e-21 76.0 0.7 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|352681392|ref|YP_004891916.1| - 9.6e-05 22.7 0.7 0.0014 18.9 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|352681392|ref|YP_004891916.1| - 0.00014 21.8 0.1 0.11 12.3 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|352681392|ref|YP_004891916.1| - 0.00027 21.4 0.0 0.00046 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|352681392|ref|YP_004891916.1| - 0.0012 18.4 0.1 0.045 13.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352681392|ref|YP_004891916.1| - 0.0048 16.6 0.1 0.0095 15.7 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.14 gi|352681392|ref|YP_004891916.1| - 0.012 15.5 0.1 0.019 14.9 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|352681392|ref|YP_004891916.1| - 0.019 14.9 0.1 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|352681392|ref|YP_004891916.1| - 0.021 13.5 0.1 0.42 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.12 gi|352681392|ref|YP_004891916.1| - 0.072 12.5 0.5 1.2 8.5 0.1 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein ATPase PF06745.13 gi|352681392|ref|YP_004891916.1| - 0.12 11.8 0.1 0.27 10.5 0.0 1.5 2 0 0 2 2 2 0 KaiC DUF87 PF01935.17 gi|352681392|ref|YP_004891916.1| - 0.15 12.1 0.0 0.29 11.2 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_30 PF13604.6 gi|352681392|ref|YP_004891916.1| - 0.17 11.5 0.1 0.48 10.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.14 gi|352681392|ref|YP_004891916.1| - 0.18 11.0 0.0 0.29 10.2 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase APS_kinase PF01583.20 gi|352681392|ref|YP_004891916.1| - 0.18 11.7 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.6 gi|352681392|ref|YP_004891916.1| - 0.2 11.8 0.0 0.42 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|352681392|ref|YP_004891916.1| - 0.2 11.6 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_5 PF07728.14 gi|352681392|ref|YP_004891916.1| - 0.22 11.5 0.1 0.87 9.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.7 gi|352681392|ref|YP_004891916.1| - 0.27 10.1 0.0 7.6 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain CxxCxxCC PF03692.15 gi|352681393|ref|YP_004891917.1| - 7.5e-13 49.0 0.0 1.1e-12 48.4 0.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Ribosomal_S30 PF04758.14 gi|352681394|ref|YP_004891918.1| - 3e-11 43.3 2.0 3.6e-11 43.1 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S30 GCD14 PF08704.10 gi|352681395|ref|YP_004891919.1| - 3.7e-34 118.5 0.0 4.6e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|352681395|ref|YP_004891919.1| - 3.5e-08 33.4 0.0 4.6e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|352681395|ref|YP_004891919.1| - 8.8e-08 32.1 0.0 1.2e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|352681395|ref|YP_004891919.1| - 0.00017 22.2 0.0 0.00037 21.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352681395|ref|YP_004891919.1| - 0.00099 19.8 0.0 0.0023 18.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|352681395|ref|YP_004891919.1| - 0.018 14.2 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 O-methyltransferase RrnaAD PF00398.20 gi|352681395|ref|YP_004891919.1| - 0.27 10.3 0.0 0.35 9.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA-synt_2b PF00587.25 gi|352681396|ref|YP_004891920.1| - 3.7e-25 88.9 0.0 5.7e-25 88.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|352681396|ref|YP_004891920.1| - 5.1e-23 81.0 0.2 1e-22 80.1 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|352681396|ref|YP_004891920.1| - 6.6e-08 32.7 0.0 1.4e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal baeRF_family10 PF18854.1 gi|352681396|ref|YP_004891920.1| - 0.61 10.3 3.3 15 5.8 0.5 2.6 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Ribosomal_S26e PF01283.19 gi|352681397|ref|YP_004891921.1| - 2.4e-29 101.9 0.9 2.8e-29 101.7 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-dskA_traR PF01258.17 gi|352681397|ref|YP_004891921.1| - 0.011 15.7 0.3 3.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.6 gi|352681397|ref|YP_004891921.1| - 0.037 14.4 0.4 0.63 10.5 0.4 2.1 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|352681397|ref|YP_004891921.1| - 0.046 13.1 0.1 0.046 13.1 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|352681397|ref|YP_004891921.1| - 0.1 12.8 1.6 0.35 11.1 0.1 2.3 2 1 0 2 2 2 0 C4-type zinc ribbon domain Methyltrn_RNA_2 PF04013.12 gi|352681398|ref|YP_004891922.1| - 1.2e-05 25.1 0.0 2.4e-05 24.2 0.0 1.4 1 1 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase CDP-OH_P_transf PF01066.21 gi|352681399|ref|YP_004891923.1| - 9e-06 26.4 1.5 9e-06 26.4 1.5 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF2286 PF10051.9 gi|352681400|ref|YP_004891924.1| - 4.3e-45 152.9 2.5 4.7e-45 152.7 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DNA_pol_B PF00136.21 gi|352681402|ref|YP_004891926.1| - 2.7e-53 181.3 0.1 5.6e-53 180.3 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|352681402|ref|YP_004891926.1| - 3.5e-26 92.2 0.0 5.8e-26 91.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|352681402|ref|YP_004891926.1| - 2.1e-05 24.3 0.0 3.9e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|352681402|ref|YP_004891926.1| - 0.00013 22.0 0.0 0.00036 20.6 0.0 1.8 1 0 0 1 1 1 1 RNase_H superfamily DUF4772 PF15997.5 gi|352681402|ref|YP_004891926.1| - 0.062 13.9 0.0 0.17 12.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4772) DUF348 PF03990.14 gi|352681402|ref|YP_004891926.1| - 0.13 12.1 0.1 2.4 8.0 0.0 2.8 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain HMG-CoA_red PF00368.18 gi|352681404|ref|YP_004891928.1| - 2.7e-132 441.3 0.2 3e-132 441.1 0.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Thiolase_N PF00108.23 gi|352681405|ref|YP_004891929.1| - 3.8e-12 46.1 0.6 1.1e-11 44.6 0.6 1.7 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|352681405|ref|YP_004891929.1| - 7.1e-06 25.7 0.0 1.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|352681405|ref|YP_004891929.1| - 0.0075 16.1 0.7 0.36 10.7 0.1 2.6 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|352681405|ref|YP_004891929.1| - 0.25 11.4 0.0 0.25 11.4 0.0 2.5 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|352681406|ref|YP_004891930.1| - 2.6e-12 46.5 0.1 3.5e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|352681406|ref|YP_004891930.1| - 8.8e-10 38.3 0.6 1.6e-09 37.4 0.6 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) YhfH PF14149.6 gi|352681406|ref|YP_004891930.1| - 0.0023 17.9 1.2 0.29 11.1 0.1 2.5 2 0 0 2 2 2 1 YhfH-like protein TF_Zn_Ribbon PF08271.12 gi|352681406|ref|YP_004891930.1| - 0.0045 16.5 0.8 0.14 11.7 0.1 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|352681406|ref|YP_004891930.1| - 0.0094 15.6 5.3 0.017 14.8 5.3 1.4 1 0 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|352681406|ref|YP_004891930.1| - 0.017 15.2 2.4 0.036 14.1 0.6 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|352681406|ref|YP_004891930.1| - 0.019 15.0 0.8 0.029 14.4 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|352681406|ref|YP_004891930.1| - 0.022 14.1 0.7 0.088 12.2 0.0 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Prok-RING_1 PF14446.6 gi|352681406|ref|YP_004891930.1| - 0.062 13.2 1.0 0.095 12.6 1.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TackOD1 PF18551.1 gi|352681406|ref|YP_004891930.1| - 0.067 12.9 0.5 0.097 12.3 0.5 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zinc_ribbon_4 PF13717.6 gi|352681406|ref|YP_004891930.1| - 0.08 12.9 1.6 4.6 7.2 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|352681406|ref|YP_004891930.1| - 0.13 12.3 1.1 1.3 9.1 0.0 2.1 1 1 1 2 2 2 0 CpXC protein TFIIS_C PF01096.18 gi|352681406|ref|YP_004891930.1| - 0.3 11.0 3.0 2.1 8.3 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) NRDD PF13597.6 gi|352681406|ref|YP_004891930.1| - 0.32 9.7 0.9 0.4 9.4 0.9 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|352681406|ref|YP_004891930.1| - 0.32 11.2 6.0 1.8 8.8 6.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|352681406|ref|YP_004891930.1| - 0.58 9.9 3.5 1.3 8.8 3.5 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain Med27 PF11571.8 gi|352681406|ref|YP_004891930.1| - 0.71 10.3 3.1 2.6 8.5 3.1 1.9 1 1 0 1 1 1 0 Mediator complex subunit 27 zf-ribbon_3 PF13248.6 gi|352681406|ref|YP_004891930.1| - 0.96 8.9 7.4 0.68 9.4 1.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352681406|ref|YP_004891930.1| - 1 9.4 5.0 0.8 9.7 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|352681406|ref|YP_004891930.1| - 2.8 8.1 7.8 3.8 7.7 1.2 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-NADH-PPase PF09297.11 gi|352681406|ref|YP_004891930.1| - 7.5 6.3 6.8 7.6 6.3 0.5 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain ACP_syn_III_C PF08541.10 gi|352681407|ref|YP_004891931.1| - 5.8e-14 52.0 0.0 3.8e-13 49.4 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|352681407|ref|YP_004891931.1| - 2.2e-07 30.5 0.0 1.6e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|352681407|ref|YP_004891931.1| - 1.7e-05 24.6 0.0 0.00013 21.7 0.0 1.9 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|352681407|ref|YP_004891931.1| - 0.042 13.7 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase N terminal FaeA PF04703.12 gi|352681408|ref|YP_004891932.1| - 3.8e-08 33.6 0.1 4.6e-08 33.3 0.1 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_5 PF01022.20 gi|352681408|ref|YP_004891932.1| - 5.9e-06 26.1 0.1 7.3e-06 25.8 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|352681408|ref|YP_004891932.1| - 2.2e-05 23.9 0.0 2.9e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|352681408|ref|YP_004891932.1| - 4.5e-05 23.1 0.0 5.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|352681408|ref|YP_004891932.1| - 5.5e-05 23.0 0.0 7.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|352681408|ref|YP_004891932.1| - 0.00011 22.6 0.2 0.00017 22.0 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|352681408|ref|YP_004891932.1| - 0.00019 21.4 0.0 0.00025 21.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix TrmB PF01978.19 gi|352681408|ref|YP_004891932.1| - 0.00022 21.0 0.0 0.00034 20.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|352681408|ref|YP_004891932.1| - 0.00031 20.7 0.0 0.00044 20.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.11 gi|352681408|ref|YP_004891932.1| - 0.00034 20.6 0.1 0.00045 20.3 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.22 gi|352681408|ref|YP_004891932.1| - 0.0013 18.6 0.1 0.0019 18.1 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|352681408|ref|YP_004891932.1| - 0.0016 18.1 0.1 0.0031 17.2 0.1 1.6 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain Replic_Relax PF13814.6 gi|352681408|ref|YP_004891932.1| - 0.003 17.7 0.0 0.0034 17.5 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation HTH_23 PF13384.6 gi|352681408|ref|YP_004891932.1| - 0.0045 16.7 0.1 0.014 15.2 0.0 1.7 1 1 1 2 2 2 1 Homeodomain-like domain DUF977 PF06163.11 gi|352681408|ref|YP_004891932.1| - 0.0054 16.7 0.1 0.0057 16.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) B-block_TFIIIC PF04182.12 gi|352681408|ref|YP_004891932.1| - 0.0065 16.6 0.0 0.0078 16.4 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_28 PF13518.6 gi|352681408|ref|YP_004891932.1| - 0.0075 16.4 0.0 0.01 15.9 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain AbiEi_4 PF13338.6 gi|352681408|ref|YP_004891932.1| - 0.0076 16.4 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_46 PF15977.5 gi|352681408|ref|YP_004891932.1| - 0.015 15.3 0.2 0.13 12.3 0.2 1.9 1 1 1 2 2 2 0 Winged helix-turn-helix DNA binding Penicillinase_R PF03965.16 gi|352681408|ref|YP_004891932.1| - 0.019 15.3 0.2 0.025 14.9 0.2 1.2 1 0 0 1 1 1 0 Penicillinase repressor Rrf2 PF02082.20 gi|352681408|ref|YP_004891932.1| - 0.022 15.1 0.0 0.028 14.8 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|352681408|ref|YP_004891932.1| - 0.026 14.6 0.4 0.029 14.5 0.4 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF1013 PF06242.11 gi|352681408|ref|YP_004891932.1| - 0.044 13.8 0.0 0.055 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) HTH_micro PF17007.5 gi|352681408|ref|YP_004891932.1| - 0.046 12.5 0.1 0.046 12.5 0.1 1.0 1 0 0 1 1 1 0 HTH-like HTH_Crp_2 PF13545.6 gi|352681408|ref|YP_004891932.1| - 0.053 13.5 0.1 0.06 13.3 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Phage_rep_O PF04492.13 gi|352681408|ref|YP_004891932.1| - 0.087 13.4 0.1 0.1 13.2 0.1 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O Chal_sti_synt_C PF02797.15 gi|352681408|ref|YP_004891932.1| - 0.12 12.4 0.1 0.13 12.2 0.1 1.0 1 0 0 1 1 1 0 Chalcone and stilbene synthases, C-terminal domain TT_ORF2 PF02957.15 gi|352681409|ref|YP_004891933.1| - 1.2 10.0 4.5 1.8 9.5 4.5 1.2 1 0 0 1 1 1 0 TT viral ORF2 Ribosomal_S25 PF03297.15 gi|352681410|ref|YP_004891934.1| - 9.7e-19 67.5 5.2 1.1e-18 67.2 5.2 1.1 1 0 0 1 1 1 1 S25 ribosomal protein SpoIIP PF07454.11 gi|352681410|ref|YP_004891934.1| - 0.005 16.3 0.2 0.0055 16.2 0.2 1.0 1 0 0 1 1 1 1 Stage II sporulation protein P (SpoIIP) YL1 PF05764.13 gi|352681410|ref|YP_004891934.1| - 0.0053 16.9 6.5 0.0056 16.8 6.5 1.1 1 0 0 1 1 1 1 YL1 nuclear protein GntR PF00392.21 gi|352681410|ref|YP_004891934.1| - 0.021 14.5 0.5 0.041 13.5 0.5 1.6 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|352681410|ref|YP_004891934.1| - 0.028 14.3 0.1 0.048 13.6 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TBP PF00352.21 gi|352681411|ref|YP_004891935.1| - 5.5e-61 202.5 0.0 3.1e-29 100.8 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|352681411|ref|YP_004891935.1| - 0.0047 17.0 0.0 0.033 14.3 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) Cobl PF09469.10 gi|352681411|ref|YP_004891935.1| - 0.089 13.1 0.0 0.2 12.0 0.0 1.5 1 0 0 1 1 1 0 Cordon-bleu ubiquitin-like domain Hjc PF01870.18 gi|352681413|ref|YP_004891937.1| - 6.8e-27 93.3 0.1 8.1e-27 93.0 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|352681413|ref|YP_004891937.1| - 0.012 15.2 0.0 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 REase_AHJR-like NERD PF08378.11 gi|352681413|ref|YP_004891937.1| - 0.079 13.4 0.0 0.17 12.4 0.0 1.6 1 1 1 2 2 2 0 Nuclease-related domain Nif11 PF07862.11 gi|352681414|ref|YP_004891938.1| - 0.00091 19.5 0.3 0.11 12.8 0.1 2.1 2 0 0 2 2 2 2 Nif11 domain Lactamase_B_3 PF13483.6 gi|352681415|ref|YP_004891939.1| - 1.1e-24 87.1 0.0 1.5e-24 86.7 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|352681415|ref|YP_004891939.1| - 8.6e-22 77.6 0.1 1.1e-21 77.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|352681415|ref|YP_004891939.1| - 1.3e-07 31.8 0.8 1.1e-06 28.8 0.8 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Trp_halogenase PF04820.14 gi|352681416|ref|YP_004891940.1| - 4.2e-15 55.6 0.1 2.9e-10 39.6 0.0 2.4 2 1 0 2 2 2 2 Tryptophan halogenase DAO PF01266.24 gi|352681416|ref|YP_004891940.1| - 5.7e-13 49.2 1.2 8.2e-07 28.9 0.4 2.4 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|352681416|ref|YP_004891940.1| - 9.2e-11 41.5 0.6 1.3e-05 24.5 0.6 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|352681416|ref|YP_004891940.1| - 1.4e-07 31.1 6.2 4.6e-06 26.1 0.5 3.6 2 2 1 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|352681416|ref|YP_004891940.1| - 3.7e-07 30.3 0.4 1.3e-06 28.6 0.1 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|352681416|ref|YP_004891940.1| - 5.1e-07 29.1 0.1 1e-06 28.1 0.1 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|352681416|ref|YP_004891940.1| - 5.8e-07 29.2 1.1 0.0034 16.8 0.7 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|352681416|ref|YP_004891940.1| - 2e-06 27.3 0.4 8.4e-06 25.2 0.2 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|352681416|ref|YP_004891940.1| - 6.7e-06 25.5 0.0 1.4e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|352681416|ref|YP_004891940.1| - 1.4e-05 24.0 0.1 1.9e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|352681416|ref|YP_004891940.1| - 0.00027 20.1 0.3 0.0074 15.4 0.2 2.7 2 1 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|352681416|ref|YP_004891940.1| - 0.005 16.7 0.1 0.0075 16.2 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GMC_oxred_N PF00732.19 gi|352681416|ref|YP_004891940.1| - 0.0085 15.5 0.0 3 7.1 0.0 2.2 2 0 0 2 2 2 2 GMC oxidoreductase Pyr_redox PF00070.27 gi|352681416|ref|YP_004891940.1| - 0.032 14.8 0.0 0.13 12.8 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|352681416|ref|YP_004891940.1| - 0.16 11.6 0.0 0.29 10.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|352681416|ref|YP_004891940.1| - 0.18 11.1 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Aldolase_II PF00596.21 gi|352681417|ref|YP_004891941.1| - 7.8e-48 162.9 0.0 8.7e-48 162.7 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain DUF3148 PF11347.8 gi|352681417|ref|YP_004891941.1| - 0.03 14.1 0.1 0.092 12.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3148) CTP-dep_RFKase PF01982.16 gi|352681418|ref|YP_004891942.1| - 3.1e-42 143.5 0.0 4.2e-42 143.1 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.7 gi|352681418|ref|YP_004891942.1| - 1.2e-06 28.3 0.6 2.7e-06 27.2 0.6 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|352681418|ref|YP_004891942.1| - 4.3e-05 23.2 2.1 4.9e-05 23.1 0.9 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_1 PF00126.27 gi|352681418|ref|YP_004891942.1| - 0.00017 21.5 0.0 0.00035 20.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|352681418|ref|YP_004891942.1| - 0.00018 21.0 0.2 0.00032 20.2 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|352681418|ref|YP_004891942.1| - 0.00021 21.3 0.9 0.00034 20.6 0.9 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|352681418|ref|YP_004891942.1| - 0.00021 21.4 1.0 0.001 19.2 0.4 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|352681418|ref|YP_004891942.1| - 0.00023 21.2 0.3 0.00049 20.1 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_8 PF02954.19 gi|352681418|ref|YP_004891942.1| - 0.00024 20.8 3.8 0.00025 20.7 1.6 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.6 gi|352681418|ref|YP_004891942.1| - 0.00077 19.4 0.4 0.0016 18.4 0.4 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|352681418|ref|YP_004891942.1| - 0.0033 17.3 0.1 0.0088 15.9 0.1 1.8 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|352681418|ref|YP_004891942.1| - 0.0069 16.2 0.1 0.017 14.9 0.1 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_11 PF08279.12 gi|352681418|ref|YP_004891942.1| - 0.013 15.4 0.0 0.15 12.0 0.0 2.2 2 0 0 2 2 2 0 HTH domain GntR PF00392.21 gi|352681418|ref|YP_004891942.1| - 0.017 14.8 0.3 0.52 10.0 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|352681418|ref|YP_004891942.1| - 0.023 14.6 0.1 0.12 12.3 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|352681418|ref|YP_004891942.1| - 0.023 15.2 0.1 0.057 13.9 0.1 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_17 PF12728.7 gi|352681418|ref|YP_004891942.1| - 0.038 14.2 0.1 2.7 8.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|352681418|ref|YP_004891942.1| - 0.04 13.9 0.1 0.089 12.8 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|352681418|ref|YP_004891942.1| - 0.05 13.4 0.1 0.14 12.0 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|352681418|ref|YP_004891942.1| - 0.064 13.6 0.0 0.1 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|352681418|ref|YP_004891942.1| - 0.15 11.8 0.1 3 7.7 0.1 2.8 3 1 0 3 3 3 0 LexA DNA binding domain DUF87 PF01935.17 gi|352681419|ref|YP_004891943.1| - 4.2e-21 76.1 0.0 6.9e-21 75.4 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|352681419|ref|YP_004891943.1| - 3.1e-09 36.2 0.0 5.7e-08 32.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|352681419|ref|YP_004891943.1| - 8.1e-06 26.3 0.1 0.00015 22.2 0.1 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.7 gi|352681419|ref|YP_004891943.1| - 2.5e-05 23.4 0.0 0.024 13.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|352681419|ref|YP_004891943.1| - 0.00066 20.0 0.5 0.18 12.1 0.1 2.7 2 1 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|352681419|ref|YP_004891943.1| - 0.001 18.3 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.18 gi|352681419|ref|YP_004891943.1| - 0.0046 16.3 0.1 0.061 12.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family MeaB PF03308.16 gi|352681419|ref|YP_004891943.1| - 0.0051 15.8 0.1 0.0081 15.2 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|352681419|ref|YP_004891943.1| - 0.0057 17.2 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 ABC transporter MMR_HSR1 PF01926.23 gi|352681419|ref|YP_004891943.1| - 0.012 15.7 0.0 0.035 14.2 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA PF00004.29 gi|352681419|ref|YP_004891943.1| - 0.068 13.6 0.0 10 6.6 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.14 gi|352681419|ref|YP_004891943.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SBP_bac_1 PF01547.25 gi|352681421|ref|YP_004891945.1| - 7.4e-14 52.4 10.8 7.4e-14 52.4 10.8 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SSP160 PF06933.11 gi|352681421|ref|YP_004891945.1| - 0.98 7.5 14.7 1.3 7.1 14.7 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 BPD_transp_1 PF00528.22 gi|352681422|ref|YP_004891946.1| - 8.7e-15 54.9 27.6 8.7e-15 54.9 27.6 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_U15 PF05613.11 gi|352681422|ref|YP_004891946.1| - 7.5 7.3 11.9 0.16 12.7 2.3 2.9 2 1 1 3 3 3 0 Human herpesvirus U15 protein BPD_transp_1 PF00528.22 gi|352681423|ref|YP_004891947.1| - 5.9e-17 62.0 25.1 5.9e-17 62.0 25.1 2.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|352681424|ref|YP_004891948.1| - 5.7e-35 120.8 0.0 1.2e-34 119.8 0.0 1.5 2 0 0 2 2 2 1 ABC transporter GlcV_C_terminal PF17847.1 gi|352681424|ref|YP_004891948.1| - 7.2e-31 106.4 1.5 7.2e-31 106.4 1.5 2.5 2 1 0 2 2 2 1 Glucose ABC transporter C-terminal domain AAA_21 PF13304.6 gi|352681424|ref|YP_004891948.1| - 1.1e-10 41.9 1.9 9.8e-06 25.6 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|352681424|ref|YP_004891948.1| - 8.3e-06 26.3 0.0 3e-05 24.5 0.0 2.0 2 0 0 2 2 1 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|352681424|ref|YP_004891948.1| - 1.3e-05 25.3 0.0 4e-05 23.7 0.0 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|352681424|ref|YP_004891948.1| - 0.003 17.0 0.1 0.042 13.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|352681424|ref|YP_004891948.1| - 0.0061 16.8 0.2 0.031 14.5 0.2 2.0 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|352681424|ref|YP_004891948.1| - 0.013 16.0 1.3 0.019 15.5 0.6 1.6 2 0 0 2 2 2 0 AAA domain OB_MalK PF17912.1 gi|352681424|ref|YP_004891948.1| - 0.015 16.1 0.2 0.1 13.4 0.1 2.6 2 1 0 2 2 1 0 MalK OB fold domain AAA_29 PF13555.6 gi|352681424|ref|YP_004891948.1| - 0.042 13.6 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|352681424|ref|YP_004891948.1| - 0.047 13.6 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA PF00004.29 gi|352681424|ref|YP_004891948.1| - 0.054 13.9 0.1 0.72 10.3 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|352681424|ref|YP_004891948.1| - 0.073 13.2 0.1 3.1 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|352681424|ref|YP_004891948.1| - 0.076 12.9 0.1 0.16 11.9 0.1 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Flavi_glycop_C PF02832.16 gi|352681424|ref|YP_004891948.1| - 0.078 13.1 0.5 1.9 8.7 0.1 2.5 1 1 0 2 2 2 0 Flavivirus glycoprotein, immunoglobulin-like domain PALP PF00291.25 gi|352681425|ref|YP_004891949.1| - 2.5e-33 115.8 0.2 1.5e-32 113.2 0.1 2.1 2 1 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme HypD PF01924.16 gi|352681426|ref|YP_004891950.1| - 1.2e-121 406.1 0.0 1.6e-121 405.7 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase formation hypA family HupF_HypC PF01455.18 gi|352681427|ref|YP_004891951.1| - 1.2e-13 51.0 0.8 1.2e-13 51.0 0.8 1.6 2 0 0 2 2 2 1 HupF/HypC family Sua5_yciO_yrdC PF01300.18 gi|352681428|ref|YP_004891952.1| - 6.8e-45 152.8 0.0 9.9e-45 152.2 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|352681428|ref|YP_004891952.1| - 1.8e-24 86.4 0.0 4e-24 85.3 0.0 1.6 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|352681428|ref|YP_004891952.1| - 3.7e-21 74.6 3.6 4.6e-11 42.3 0.4 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|352681428|ref|YP_004891952.1| - 7.6e-19 67.9 0.1 1.3e-18 67.1 0.1 1.4 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|352681428|ref|YP_004891952.1| - 0.00034 20.4 0.1 0.073 12.8 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family zf-C4_ClpX PF06689.13 gi|352681428|ref|YP_004891952.1| - 0.02 14.8 1.5 1.5 8.7 0.0 2.5 2 0 0 2 2 2 0 ClpX C4-type zinc finger ABC_tran PF00005.27 gi|352681429|ref|YP_004891953.1| - 1.4e-29 103.3 0.0 1.8e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681429|ref|YP_004891953.1| - 1.6e-14 54.4 0.0 1.7e-08 34.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681429|ref|YP_004891953.1| - 2.5e-07 30.4 0.0 0.0003 20.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352681429|ref|YP_004891953.1| - 4.6e-06 27.0 0.0 2.4e-05 24.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|352681429|ref|YP_004891953.1| - 1.8e-05 24.4 0.3 3.2e-05 23.6 0.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352681429|ref|YP_004891953.1| - 0.0017 18.0 0.0 0.0031 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|352681429|ref|YP_004891953.1| - 0.0059 17.0 0.1 0.0088 16.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|352681429|ref|YP_004891953.1| - 0.007 15.5 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|352681429|ref|YP_004891953.1| - 0.0072 16.1 0.2 0.086 12.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|352681429|ref|YP_004891953.1| - 0.01 16.0 0.1 0.085 13.1 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|352681429|ref|YP_004891953.1| - 0.022 14.7 0.0 0.029 14.3 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|352681429|ref|YP_004891953.1| - 0.036 14.2 0.1 0.49 10.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|352681429|ref|YP_004891953.1| - 0.037 13.9 0.1 0.063 13.2 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|352681429|ref|YP_004891953.1| - 0.038 14.5 0.0 0.053 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|352681429|ref|YP_004891953.1| - 0.038 13.7 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DEAD PF00270.29 gi|352681429|ref|YP_004891953.1| - 0.043 13.6 0.0 2 8.2 0.1 2.1 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_18 PF13238.6 gi|352681429|ref|YP_004891953.1| - 0.046 14.3 0.0 0.73 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|352681429|ref|YP_004891953.1| - 0.052 13.1 0.1 0.079 12.5 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ResIII PF04851.15 gi|352681429|ref|YP_004891953.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|352681429|ref|YP_004891953.1| - 0.12 12.4 0.1 0.34 10.9 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|352681429|ref|YP_004891953.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|352681429|ref|YP_004891953.1| - 0.15 12.3 0.2 0.62 10.3 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.6 gi|352681429|ref|YP_004891953.1| - 0.18 11.8 0.0 0.79 9.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|352681429|ref|YP_004891953.1| - 0.18 11.7 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase PhoH PF02562.16 gi|352681429|ref|YP_004891953.1| - 0.2 11.1 0.0 0.38 10.2 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein PDGLE PF13190.6 gi|352681431|ref|YP_004891955.1| - 6.6e-12 45.2 0.0 7.6e-12 45.0 0.0 1.0 1 0 0 1 1 1 1 PDGLE domain DUF4014 PF13198.6 gi|352681431|ref|YP_004891955.1| - 0.22 11.9 1.9 0.29 11.5 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4014) GP41 PF00517.17 gi|352681431|ref|YP_004891955.1| - 0.28 11.1 0.7 0.29 11.0 0.7 1.2 1 1 0 1 1 1 0 Retroviral envelope protein SDF PF00375.18 gi|352681431|ref|YP_004891955.1| - 0.47 9.4 3.7 5.8 5.8 0.1 2.0 1 1 1 2 2 2 0 Sodium:dicarboxylate symporter family CbiM PF01891.16 gi|352681432|ref|YP_004891956.1| - 4.7e-60 203.0 16.8 5.2e-60 202.8 16.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF_trnsprt PF12822.7 gi|352681432|ref|YP_004891956.1| - 0.00093 19.3 20.4 0.0017 18.5 20.0 1.7 1 1 0 1 1 1 1 ECF transporter, substrate-specific component DUF4748 PF15932.5 gi|352681432|ref|YP_004891956.1| - 5.9 6.7 8.0 6.7 6.6 1.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4748) NikR_C PF08753.11 gi|352681433|ref|YP_004891957.1| - 1.6e-25 89.1 2.5 2.5e-25 88.5 2.5 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain E3_UFM1_ligase PF09743.9 gi|352681433|ref|YP_004891957.1| - 0.027 14.1 0.0 0.068 12.8 0.0 1.6 2 0 0 2 2 2 0 E3 UFM1-protein ligase 1 HypA PF01155.19 gi|352681434|ref|YP_004891958.1| - 3.1e-22 78.7 0.0 3.5e-22 78.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|352681434|ref|YP_004891958.1| - 0.0022 18.0 2.5 0.74 10.0 0.7 2.3 2 0 0 2 2 2 2 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|352681434|ref|YP_004891958.1| - 0.0027 17.6 0.6 0.39 10.7 0.1 2.3 2 0 0 2 2 2 1 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|352681434|ref|YP_004891958.1| - 0.0039 16.7 0.2 2 8.0 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|352681434|ref|YP_004891958.1| - 0.0043 16.9 0.7 0.081 12.8 0.1 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|352681434|ref|YP_004891958.1| - 0.0054 16.1 1.2 0.16 11.4 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352681434|ref|YP_004891958.1| - 0.01 15.8 0.7 2 8.4 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.6 gi|352681434|ref|YP_004891958.1| - 0.014 16.0 2.2 3.2 8.5 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.7 gi|352681434|ref|YP_004891958.1| - 0.048 14.1 4.5 1.5 9.3 0.8 2.6 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 eIF-5_eIF-2B PF01873.17 gi|352681434|ref|YP_004891958.1| - 0.062 13.2 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 Domain found in IF2B/IF5 Rubredoxin PF00301.20 gi|352681434|ref|YP_004891958.1| - 0.066 13.2 4.0 2.3 8.3 4.0 2.1 1 1 0 1 1 1 0 Rubredoxin zf-Dof PF02701.15 gi|352681434|ref|YP_004891958.1| - 0.072 13.3 1.0 12 6.1 0.1 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger TackOD1 PF18551.1 gi|352681434|ref|YP_004891958.1| - 0.078 12.6 0.2 5.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Ribosomal_L32p PF01783.23 gi|352681434|ref|YP_004891958.1| - 0.091 13.0 0.0 20 5.6 0.0 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family DUF35_N PF12172.8 gi|352681434|ref|YP_004891958.1| - 0.12 12.3 3.4 0.88 9.5 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|352681434|ref|YP_004891958.1| - 0.12 12.1 2.3 3.2 7.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|352681434|ref|YP_004891958.1| - 0.12 12.2 1.5 11 5.9 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.13 gi|352681434|ref|YP_004891958.1| - 0.18 11.5 3.9 7.5 6.3 0.3 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1 PF03811.13 gi|352681434|ref|YP_004891958.1| - 0.18 11.5 5.0 2.2 8.1 0.2 2.4 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_4 PF13717.6 gi|352681434|ref|YP_004891958.1| - 0.21 11.5 1.4 7.8 6.5 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.16 gi|352681434|ref|YP_004891958.1| - 0.61 10.0 6.2 5.4 7.0 1.5 2.1 2 0 0 2 2 2 0 HIT zinc finger Rubredoxin_2 PF18073.1 gi|352681434|ref|YP_004891958.1| - 0.78 9.5 10.8 0.83 9.4 2.9 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|352681434|ref|YP_004891958.1| - 2.9 8.1 7.1 3.5 7.8 1.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ParA PF10609.9 gi|352681435|ref|YP_004891959.1| - 2.2e-34 119.0 0.0 2.9e-34 118.6 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|352681435|ref|YP_004891959.1| - 0.00031 20.8 0.0 0.00032 20.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF917 PF06032.12 gi|352681435|ref|YP_004891959.1| - 0.0092 14.8 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF917) ArsA_ATPase PF02374.15 gi|352681435|ref|YP_004891959.1| - 0.04 13.1 0.2 0.12 11.5 0.1 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_31 PF13614.6 gi|352681435|ref|YP_004891959.1| - 0.073 13.0 0.1 0.14 12.1 0.0 1.4 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|352681435|ref|YP_004891959.1| - 0.18 11.4 0.0 0.27 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain HMGL-like PF00682.19 gi|352681437|ref|YP_004891961.1| - 3.9e-58 197.1 0.0 6.7e-58 196.3 0.0 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|352681437|ref|YP_004891961.1| - 3.1e-27 95.1 0.0 6.1e-27 94.1 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Rota_NSP4 PF01452.16 gi|352681438|ref|YP_004891962.1| - 0.057 13.1 0.6 0.096 12.4 0.6 1.4 1 0 0 1 1 1 0 Rotavirus non structural protein IncE PF17627.2 gi|352681438|ref|YP_004891962.1| - 0.12 12.3 2.4 0.17 11.9 2.4 1.3 1 0 0 1 1 1 0 Inclusion membrane protein E DUF2070 PF09843.9 gi|352681438|ref|YP_004891962.1| - 0.5 8.6 14.0 0.63 8.3 14.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Oxidored_q3 PF00499.20 gi|352681438|ref|YP_004891962.1| - 0.55 10.0 18.2 0.19 11.4 14.6 2.1 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q2 PF00420.24 gi|352681439|ref|YP_004891963.1| - 0.00049 19.7 5.7 0.00064 19.3 5.7 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YtpI PF14007.6 gi|352681439|ref|YP_004891963.1| - 0.029 14.5 1.2 0.029 14.5 1.2 1.5 1 1 1 2 2 2 0 YtpI-like protein DUF3188 PF11384.8 gi|352681439|ref|YP_004891963.1| - 0.033 13.9 4.1 0.033 13.9 4.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3188) Proton_antipo_M PF00361.20 gi|352681440|ref|YP_004891964.1| - 5.7e-26 91.4 19.2 3.7e-24 85.4 19.2 2.5 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|352681441|ref|YP_004891965.1| - 5.5e-25 88.2 15.9 5.5e-25 88.2 15.9 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|352681442|ref|YP_004891966.1| - 1.6e-08 34.1 3.5 1.6e-08 34.1 3.5 2.8 2 1 1 3 3 3 2 Proton-conducting membrane transporter POR PF01558.18 gi|352681443|ref|YP_004891967.1| - 4.5e-31 108.3 0.3 5.7e-31 107.9 0.3 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|352681443|ref|YP_004891967.1| - 1.6e-14 53.0 12.8 2.9e-08 33.2 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681443|ref|YP_004891967.1| - 1.4e-11 44.4 5.8 2.3e-11 43.6 5.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352681443|ref|YP_004891967.1| - 2e-08 34.7 7.3 6.1e-08 33.1 7.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681443|ref|YP_004891967.1| - 2.5e-08 33.7 14.1 4e-05 23.5 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352681443|ref|YP_004891967.1| - 3.3e-08 34.3 7.6 0.00017 22.5 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|352681443|ref|YP_004891967.1| - 5.8e-07 29.6 8.2 6.4e-06 26.2 9.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352681443|ref|YP_004891967.1| - 1.8e-06 28.0 9.7 6.9e-06 26.1 9.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352681443|ref|YP_004891967.1| - 9.9e-06 25.4 10.4 0.0016 18.4 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|352681443|ref|YP_004891967.1| - 0.00013 22.3 5.4 0.00025 21.4 5.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352681443|ref|YP_004891967.1| - 0.00028 21.4 5.9 0.29 11.7 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681443|ref|YP_004891967.1| - 0.0016 18.8 13.6 0.1 13.1 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|352681443|ref|YP_004891967.1| - 0.008 16.7 12.1 0.025 15.1 2.7 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I DUF2073 PF09846.9 gi|352681443|ref|YP_004891967.1| - 0.021 14.7 0.0 0.04 13.8 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) Fer4_15 PF13459.6 gi|352681443|ref|YP_004891967.1| - 0.046 14.5 9.1 1.2 10.0 1.6 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|352681443|ref|YP_004891967.1| - 0.053 13.7 3.0 4.6 7.5 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|352681443|ref|YP_004891967.1| - 0.83 10.5 10.9 1.4 9.8 1.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|352681443|ref|YP_004891967.1| - 1.4 10.0 16.7 0.33 12.0 6.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain PHD_3 PF13922.6 gi|352681443|ref|YP_004891967.1| - 7.6 7.0 7.5 0.93 9.9 0.5 2.4 2 0 0 2 2 2 0 PHD domain of transcriptional enhancer, Asx POR_N PF01855.19 gi|352681444|ref|YP_004891968.1| - 3.1e-66 223.4 0.4 4.4e-66 222.9 0.4 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|352681444|ref|YP_004891968.1| - 3.9e-21 75.3 0.1 9.1e-21 74.1 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|352681444|ref|YP_004891968.1| - 3.7e-11 43.0 0.2 9.6e-11 41.6 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|352681445|ref|YP_004891969.1| - 2.2e-27 95.7 0.2 3.1e-27 95.3 0.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|352681445|ref|YP_004891969.1| - 0.0025 17.1 0.2 0.055 12.7 0.2 2.2 1 1 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase YjeF_N PF03853.15 gi|352681445|ref|YP_004891969.1| - 0.16 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 YjeF-related protein N-terminus Fer4 PF00037.27 gi|352681446|ref|YP_004891970.1| - 8.5e-16 57.0 13.6 8.9e-09 34.8 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352681446|ref|YP_004891970.1| - 9.9e-13 48.0 18.0 9.1e-10 38.5 9.7 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352681446|ref|YP_004891970.1| - 1.2e-11 45.0 9.3 2e-11 44.3 9.3 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681446|ref|YP_004891970.1| - 1.8e-11 43.5 12.1 2.5e-06 27.3 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352681446|ref|YP_004891970.1| - 8.3e-11 41.9 6.5 1.2e-10 41.4 6.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352681446|ref|YP_004891970.1| - 1.4e-09 38.3 1.2 0.00065 20.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352681446|ref|YP_004891970.1| - 5.2e-09 35.7 11.8 0.00014 21.7 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352681446|ref|YP_004891970.1| - 5.3e-09 36.9 5.4 0.00052 20.9 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|352681446|ref|YP_004891970.1| - 8.4e-09 35.9 2.3 0.0012 19.3 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681446|ref|YP_004891970.1| - 7.1e-07 29.3 12.4 0.00081 19.7 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681446|ref|YP_004891970.1| - 1.9e-06 27.9 9.8 0.0053 16.9 0.6 2.0 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|352681446|ref|YP_004891970.1| - 4.8e-05 23.8 8.0 0.017 15.6 0.7 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|352681446|ref|YP_004891970.1| - 0.00015 22.4 17.7 0.0053 17.6 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|352681446|ref|YP_004891970.1| - 0.00044 20.9 5.9 0.13 13.0 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|352681446|ref|YP_004891970.1| - 0.0012 19.1 9.4 0.032 14.4 9.8 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|352681446|ref|YP_004891970.1| - 0.003 18.4 7.8 0.34 11.8 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain NADHdh PF00146.21 gi|352681447|ref|YP_004891971.1| - 5.9e-70 235.9 21.1 7.1e-70 235.7 21.1 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF2206 PF09971.9 gi|352681447|ref|YP_004891971.1| - 0.01 14.6 1.4 0.022 13.5 1.4 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) Oxidored_q4 PF00507.19 gi|352681448|ref|YP_004891972.1| - 1.5e-05 25.0 0.2 1.5e-05 25.0 0.2 1.7 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF2721 PF11026.8 gi|352681448|ref|YP_004891972.1| - 1.9 8.4 8.5 5.4 6.9 7.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) RseC_MucC PF04246.12 gi|352681448|ref|YP_004891972.1| - 7.3 6.6 7.5 0.92 9.5 2.3 1.8 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Oxidored_q6 PF01058.22 gi|352681449|ref|YP_004891973.1| - 1.3e-24 86.5 0.1 1.5e-24 86.3 0.1 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|352681450|ref|YP_004891974.1| - 5.5e-62 209.3 0.0 7.5e-62 208.9 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|352681450|ref|YP_004891974.1| - 0.095 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Nickel-dependent hydrogenase MFS_1 PF07690.16 gi|352681451|ref|YP_004891975.1| - 7.4e-52 176.4 41.4 7.4e-52 176.4 41.4 1.7 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|352681451|ref|YP_004891975.1| - 4.1e-16 58.9 17.6 1.6e-14 53.7 6.8 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|352681451|ref|YP_004891975.1| - 0.027 12.9 19.4 0.0098 14.3 7.6 2.5 2 1 0 2 2 2 0 Transmembrane secretion effector Glycos_transf_1 PF00534.20 gi|352681452|ref|YP_004891976.1| - 1.3e-26 93.2 0.0 1.8e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352681452|ref|YP_004891976.1| - 6.4e-11 42.8 0.0 9.7e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|352681452|ref|YP_004891976.1| - 5.3e-08 33.1 0.0 9.6e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352681452|ref|YP_004891976.1| - 0.00048 20.2 5.4 0.031 14.3 0.2 3.6 3 2 0 3 3 3 2 Glycosyltransferase Family 4 tRNA-synt_1b PF00579.25 gi|352681454|ref|YP_004891978.1| - 5.1e-30 104.8 0.0 9.1e-30 104.0 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|352681454|ref|YP_004891978.1| - 0.037 12.9 0.0 1.2 7.9 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) Sep15_SelM PF08806.11 gi|352681454|ref|YP_004891978.1| - 0.093 12.9 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 Sep15/SelM redox domain FAM194 PF14977.6 gi|352681454|ref|YP_004891978.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 FAM194 protein TRAM PF01938.20 gi|352681455|ref|YP_004891979.1| - 5.3e-14 51.9 3.5 6.6e-14 51.6 3.5 1.1 1 0 0 1 1 1 1 TRAM domain CusF_Ec PF11604.8 gi|352681455|ref|YP_004891979.1| - 0.0019 18.1 0.5 0.12 12.4 0.1 2.1 2 0 0 2 2 2 2 Copper binding periplasmic protein CusF CSD2 PF17876.1 gi|352681455|ref|YP_004891979.1| - 0.17 12.1 4.8 2 8.6 0.3 2.1 1 1 1 2 2 2 0 Cold shock domain HTH_24 PF13412.6 gi|352681456|ref|YP_004891980.1| - 2e-09 36.8 0.0 3.5e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|352681456|ref|YP_004891980.1| - 1.5e-08 34.4 0.3 2.4e-08 33.7 0.3 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|352681456|ref|YP_004891980.1| - 1.6e-07 31.1 0.0 2.5e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|352681456|ref|YP_004891980.1| - 3.8e-06 26.7 0.0 6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|352681456|ref|YP_004891980.1| - 2.4e-05 24.3 0.0 4.8e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|352681456|ref|YP_004891980.1| - 2.6e-05 23.9 0.1 5.9e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|352681456|ref|YP_004891980.1| - 9.5e-05 22.2 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|352681456|ref|YP_004891980.1| - 0.00015 21.4 0.1 0.0003 20.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|352681456|ref|YP_004891980.1| - 0.00038 20.4 0.0 0.00072 19.5 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|352681456|ref|YP_004891980.1| - 0.00058 20.3 0.0 0.00097 19.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|352681456|ref|YP_004891980.1| - 0.0021 18.0 0.0 0.005 16.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Fe_dep_repress PF01325.19 gi|352681456|ref|YP_004891980.1| - 0.0024 18.0 0.0 0.0043 17.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|352681456|ref|YP_004891980.1| - 0.0047 16.7 0.0 0.01 15.6 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_47 PF16221.5 gi|352681456|ref|YP_004891980.1| - 0.017 14.6 0.0 0.46 10.1 0.0 2.3 2 0 0 2 2 2 0 winged helix-turn-helix HTH_28 PF13518.6 gi|352681456|ref|YP_004891980.1| - 0.019 15.1 0.6 0.18 12.0 0.1 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|352681456|ref|YP_004891980.1| - 0.022 14.9 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.16 gi|352681456|ref|YP_004891980.1| - 0.024 15.0 0.0 0.037 14.4 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_CodY PF08222.11 gi|352681456|ref|YP_004891980.1| - 0.026 14.1 0.1 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 CodY helix-turn-helix domain HTH_36 PF13730.6 gi|352681456|ref|YP_004891980.1| - 0.026 14.5 0.0 0.093 12.7 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 gi|352681456|ref|YP_004891980.1| - 0.029 15.0 1.2 0.27 11.9 1.2 2.2 1 1 0 1 1 1 0 Replication protein A C terminal TFIIE_alpha PF02002.17 gi|352681456|ref|YP_004891980.1| - 0.049 13.5 0.0 0.079 12.8 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Pex14_N PF04695.13 gi|352681456|ref|YP_004891980.1| - 0.058 14.1 6.0 0.089 13.4 6.0 1.2 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region HTH_41 PF14502.6 gi|352681456|ref|YP_004891980.1| - 0.096 12.4 0.2 0.25 11.1 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_42 PF06224.12 gi|352681456|ref|YP_004891980.1| - 0.15 11.5 0.1 0.19 11.2 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_8 PF02954.19 gi|352681456|ref|YP_004891980.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family SOG2 PF10428.9 gi|352681456|ref|YP_004891980.1| - 0.74 8.9 7.1 0.94 8.6 7.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein RAP1 PF07218.11 gi|352681456|ref|YP_004891980.1| - 0.76 8.0 7.8 0.99 7.6 7.8 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF515 PF04415.12 gi|352681456|ref|YP_004891980.1| - 0.85 7.9 4.9 1.1 7.6 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Peptidase_M61 PF05299.12 gi|352681457|ref|YP_004891981.1| - 0.068 13.6 0.7 0.47 10.9 0.2 2.4 2 1 0 2 2 2 0 M61 glycyl aminopeptidase MAP65_ASE1 PF03999.12 gi|352681457|ref|YP_004891981.1| - 0.55 8.9 3.2 0.19 10.4 0.2 1.8 2 0 0 2 2 2 0 Microtubule associated protein (MAP65/ASE1 family) Na_Ca_ex PF01699.24 gi|352681458|ref|YP_004891982.1| - 6e-15 55.5 19.7 2.5e-07 30.8 6.5 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SLATT_1 PF18181.1 gi|352681458|ref|YP_004891982.1| - 1.6 8.7 4.2 2.2 8.2 0.3 2.6 2 1 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 PBP_like PF12727.7 gi|352681459|ref|YP_004891983.1| - 2.5e-32 111.6 0.0 3.8e-32 111.0 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|352681459|ref|YP_004891983.1| - 3.4e-13 49.3 2.4 2.4e-11 43.4 0.2 2.4 2 0 0 2 2 2 2 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 gi|352681459|ref|YP_004891983.1| - 2.5e-05 23.8 0.1 0.031 13.7 0.0 2.2 1 1 1 2 2 2 2 LysR substrate binding domain Thioredoxin_4 PF13462.6 gi|352681460|ref|YP_004891984.1| - 1.1e-06 28.9 0.2 3e-06 27.5 0.0 1.8 2 0 0 2 2 1 1 Thioredoxin Nup54 PF13874.6 gi|352681460|ref|YP_004891984.1| - 1e-05 25.7 5.2 1.5e-05 25.1 5.2 1.2 1 0 0 1 1 1 1 Nucleoporin complex subunit 54 ZapB PF06005.12 gi|352681460|ref|YP_004891984.1| - 2.1e-05 24.8 8.2 0.039 14.4 0.1 3.2 1 1 2 3 3 3 2 Cell division protein ZapB Spc7 PF08317.11 gi|352681460|ref|YP_004891984.1| - 4e-05 22.7 3.2 6.1e-05 22.0 3.2 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein HALZ PF02183.18 gi|352681460|ref|YP_004891984.1| - 0.00016 21.8 20.1 0.04 14.2 2.1 3.9 2 1 2 4 4 4 3 Homeobox associated leucine zipper APG6_N PF17675.1 gi|352681460|ref|YP_004891984.1| - 0.00025 21.6 10.9 0.009 16.5 2.2 2.2 1 1 0 2 2 2 2 Apg6 coiled-coil region DivIC PF04977.15 gi|352681460|ref|YP_004891984.1| - 0.00028 20.6 10.8 0.0078 16.0 0.6 3.0 1 1 2 3 3 3 2 Septum formation initiator CLZ PF16526.5 gi|352681460|ref|YP_004891984.1| - 0.00052 20.3 7.4 0.16 12.3 1.0 3.1 2 1 2 4 4 4 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels GAS PF13851.6 gi|352681460|ref|YP_004891984.1| - 0.00071 19.0 5.4 0.0018 17.6 5.5 1.5 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Tup_N PF08581.10 gi|352681460|ref|YP_004891984.1| - 0.0011 19.2 0.5 0.0011 19.2 0.5 2.1 2 0 0 2 2 2 1 Tup N-terminal TMF_TATA_bd PF12325.8 gi|352681460|ref|YP_004891984.1| - 0.0023 18.1 6.9 0.13 12.5 2.4 2.6 1 1 2 3 3 2 1 TATA element modulatory factor 1 TATA binding SKA2 PF16740.5 gi|352681460|ref|YP_004891984.1| - 0.0025 17.6 4.1 2.2 8.1 0.1 3.4 1 1 1 3 3 3 1 Spindle and kinetochore-associated protein 2 Mod_r PF07200.13 gi|352681460|ref|YP_004891984.1| - 0.0031 17.6 14.7 0.008 16.3 4.6 2.2 1 1 1 2 2 2 1 Modifier of rudimentary (Mod(r)) protein BRE1 PF08647.11 gi|352681460|ref|YP_004891984.1| - 0.0035 17.4 6.2 0.035 14.2 1.3 2.2 1 1 1 2 2 2 1 BRE1 E3 ubiquitin ligase DUF4472 PF14739.6 gi|352681460|ref|YP_004891984.1| - 0.0084 16.8 5.2 0.13 13.0 0.7 2.6 1 1 2 3 3 3 2 Domain of unknown function (DUF4472) DUF4407 PF14362.6 gi|352681460|ref|YP_004891984.1| - 0.0089 15.4 8.0 0.13 11.6 8.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4407) ADIP PF11559.8 gi|352681460|ref|YP_004891984.1| - 0.0095 16.0 9.6 0.04 14.0 2.2 2.1 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding DUF4201 PF13870.6 gi|352681460|ref|YP_004891984.1| - 0.011 15.5 3.5 0.018 14.8 3.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) Bap31_Bap29_C PF18035.1 gi|352681460|ref|YP_004891984.1| - 0.011 15.8 9.7 0.024 14.6 0.6 3.3 2 1 0 2 2 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain Jnk-SapK_ap_N PF09744.9 gi|352681460|ref|YP_004891984.1| - 0.014 15.6 6.0 0.021 15.1 0.4 2.1 1 1 0 2 2 2 0 JNK_SAPK-associated protein-1 FapA PF03961.13 gi|352681460|ref|YP_004891984.1| - 0.023 13.3 3.5 0.44 9.1 0.4 2.0 1 1 1 2 2 2 0 Flagellar Assembly Protein A ATP-synt_D PF01813.17 gi|352681460|ref|YP_004891984.1| - 0.026 14.4 1.0 3.3 7.5 0.0 2.2 2 0 0 2 2 2 0 ATP synthase subunit D FlaC_arch PF05377.11 gi|352681460|ref|YP_004891984.1| - 0.035 14.5 1.7 1.1 9.7 0.4 2.5 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) ABC_tran_CTD PF16326.5 gi|352681460|ref|YP_004891984.1| - 0.036 14.3 4.0 0.35 11.2 0.3 2.9 2 1 1 3 3 3 0 ABC transporter C-terminal domain JIP_LZII PF16471.5 gi|352681460|ref|YP_004891984.1| - 0.037 14.2 1.5 3.8 7.8 0.1 2.4 1 1 0 2 2 2 0 JNK-interacting protein leucine zipper II DUF5082 PF16888.5 gi|352681460|ref|YP_004891984.1| - 0.038 14.3 4.5 0.06 13.6 4.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) bZIP_1 PF00170.21 gi|352681460|ref|YP_004891984.1| - 0.04 14.0 6.9 0.25 11.5 0.1 3.1 2 1 1 3 3 3 0 bZIP transcription factor JAKMIP_CC3 PF16034.5 gi|352681460|ref|YP_004891984.1| - 0.044 13.7 14.0 0.45 10.4 2.9 2.3 1 1 1 2 2 2 0 JAKMIP CC3 domain Syntaxin_2 PF14523.6 gi|352681460|ref|YP_004891984.1| - 0.071 13.5 8.7 0.51 10.7 0.9 2.9 1 1 1 2 2 2 0 Syntaxin-like protein Fez1 PF06818.15 gi|352681460|ref|YP_004891984.1| - 0.073 13.5 1.9 0.12 12.8 1.9 1.2 1 0 0 1 1 1 0 Fez1 AAA_13 PF13166.6 gi|352681460|ref|YP_004891984.1| - 0.089 11.4 0.9 0.12 11.0 0.9 1.1 1 0 0 1 1 1 0 AAA domain KAR9 PF08580.10 gi|352681460|ref|YP_004891984.1| - 0.1 11.1 3.5 0.25 9.8 3.5 1.5 1 1 0 1 1 1 0 Yeast cortical protein KAR9 GrpE PF01025.19 gi|352681460|ref|YP_004891984.1| - 0.11 12.2 4.7 0.76 9.4 0.3 2.4 1 1 2 3 3 3 0 GrpE HemX PF04375.14 gi|352681460|ref|YP_004891984.1| - 0.11 11.8 10.5 0.047 13.0 6.2 1.9 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Spectrin PF00435.21 gi|352681460|ref|YP_004891984.1| - 0.11 12.9 3.1 2.5 8.6 0.1 2.3 1 1 1 2 2 2 0 Spectrin repeat Sec34 PF04136.15 gi|352681460|ref|YP_004891984.1| - 0.11 12.3 9.0 1.5 8.7 2.9 2.5 1 1 2 3 3 3 0 Sec34-like family HalX PF08663.10 gi|352681460|ref|YP_004891984.1| - 0.14 12.5 15.1 1.3 9.4 0.3 3.5 2 1 1 3 3 3 0 HalX domain Lebercilin PF15619.6 gi|352681460|ref|YP_004891984.1| - 0.15 11.7 3.6 0.22 11.1 3.6 1.2 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Prefoldin_2 PF01920.20 gi|352681460|ref|YP_004891984.1| - 0.16 11.9 7.3 3.7 7.6 0.3 2.8 1 1 2 3 3 3 0 Prefoldin subunit Scaffolding_pro PF11418.8 gi|352681460|ref|YP_004891984.1| - 0.17 12.5 3.9 8.7 7.0 0.2 3.1 1 1 1 3 3 3 0 Phi29 scaffolding protein FliD_N PF02465.18 gi|352681460|ref|YP_004891984.1| - 0.2 12.4 16.5 4.4 8.1 4.0 3.4 2 1 1 3 3 2 0 Flagellar hook-associated protein 2 N-terminus IFT57 PF10498.9 gi|352681460|ref|YP_004891984.1| - 0.23 10.4 9.3 0.074 12.0 0.7 2.1 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Taxilin PF09728.9 gi|352681460|ref|YP_004891984.1| - 0.24 10.6 6.7 1.6 7.8 5.6 2.0 1 1 2 3 3 3 0 Myosin-like coiled-coil protein Cep57_MT_bd PF06657.13 gi|352681460|ref|YP_004891984.1| - 0.25 11.8 6.6 3.5 8.1 0.3 3.3 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 BLOC1_2 PF10046.9 gi|352681460|ref|YP_004891984.1| - 0.26 11.6 9.9 0.26 11.6 1.3 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 OGG_N PF07934.12 gi|352681460|ref|YP_004891984.1| - 0.35 11.0 3.8 0.94 9.6 3.8 1.7 1 1 0 1 1 1 0 8-oxoguanine DNA glycosylase, N-terminal domain TPR_MLP1_2 PF07926.12 gi|352681460|ref|YP_004891984.1| - 0.39 10.8 13.8 0.45 10.6 3.0 2.2 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DHR10 PF18595.1 gi|352681460|ref|YP_004891984.1| - 0.42 10.7 6.4 2.1 8.4 1.0 2.2 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain Spc24 PF08286.11 gi|352681460|ref|YP_004891984.1| - 0.42 10.9 5.4 2.6 8.3 0.8 2.7 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 EzrA PF06160.12 gi|352681460|ref|YP_004891984.1| - 0.43 8.7 9.5 1.5 6.9 4.2 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA OmpH PF03938.14 gi|352681460|ref|YP_004891984.1| - 0.44 10.9 7.6 27 5.1 7.8 2.2 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) PI3K_P85_iSH2 PF16454.5 gi|352681460|ref|YP_004891984.1| - 0.46 10.1 6.3 0.88 9.2 0.3 2.2 1 1 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain COG5 PF10392.9 gi|352681460|ref|YP_004891984.1| - 0.51 10.5 10.3 3.9 7.6 2.3 2.5 1 1 1 2 2 2 0 Golgi transport complex subunit 5 CENP-H PF05837.12 gi|352681460|ref|YP_004891984.1| - 0.53 10.7 7.4 3.2 8.2 1.0 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) CENP-F_leu_zip PF10473.9 gi|352681460|ref|YP_004891984.1| - 0.57 10.2 2.4 2.5 8.1 0.4 2.0 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 KASH_CCD PF14662.6 gi|352681460|ref|YP_004891984.1| - 0.58 9.9 4.3 15 5.4 4.0 2.0 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH Occludin_ELL PF07303.13 gi|352681460|ref|YP_004891984.1| - 0.74 10.6 9.6 1.8 9.3 1.8 2.4 1 1 1 2 2 2 0 Occludin homology domain DUF4795 PF16043.5 gi|352681460|ref|YP_004891984.1| - 0.77 9.3 3.2 5 6.7 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) TLE_N PF03920.15 gi|352681460|ref|YP_004891984.1| - 0.93 9.6 5.0 2.2 8.4 0.6 2.4 1 1 1 2 2 2 0 Groucho/TLE N-terminal Q-rich domain HMMR_C PF15908.5 gi|352681460|ref|YP_004891984.1| - 1 9.6 4.2 4.1 7.7 4.2 1.8 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor C-terminal YabA PF06156.13 gi|352681460|ref|YP_004891984.1| - 1.1 9.9 4.3 20 5.9 4.3 2.2 1 1 0 1 1 1 0 Initiation control protein YabA TolA_bind_tri PF16331.5 gi|352681460|ref|YP_004891984.1| - 1.2 9.3 7.6 1.9 8.6 3.1 2.3 2 0 0 2 2 2 0 TolA binding protein trimerisation Tektin PF03148.14 gi|352681460|ref|YP_004891984.1| - 1.2 7.8 6.9 57 2.3 6.5 2.1 1 1 0 1 1 1 0 Tektin family Rho_Binding PF08912.11 gi|352681460|ref|YP_004891984.1| - 1.3 9.9 5.4 4.9 8.1 0.6 2.5 1 1 2 3 3 3 0 Rho Binding ATG16 PF08614.11 gi|352681460|ref|YP_004891984.1| - 1.5 9.0 12.5 70 3.6 2.5 2.2 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) SHE3 PF17078.5 gi|352681460|ref|YP_004891984.1| - 1.5 8.5 11.8 9.9 5.8 11.6 2.0 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 THOC7 PF05615.13 gi|352681460|ref|YP_004891984.1| - 1.6 9.0 8.2 1.8 8.8 5.3 2.0 1 1 1 2 2 2 0 Tho complex subunit 7 DUF4686 PF15742.5 gi|352681460|ref|YP_004891984.1| - 1.6 7.7 8.7 0.87 8.7 1.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4686) DUF5344 PF17279.2 gi|352681460|ref|YP_004891984.1| - 1.7 9.3 11.1 1 10.0 1.8 3.0 1 1 3 4 4 4 0 Family of unknown function (DUF5344) NlpE_C PF17185.4 gi|352681460|ref|YP_004891984.1| - 2 8.7 4.0 10 6.5 0.4 2.9 1 1 2 3 3 2 0 NlpE C-terminal OB domain bZIP_Maf PF03131.17 gi|352681460|ref|YP_004891984.1| - 2.8 8.5 6.6 12 6.5 0.9 2.4 2 0 0 2 2 2 0 bZIP Maf transcription factor GIT_CC PF16559.5 gi|352681460|ref|YP_004891984.1| - 2.8 7.9 9.4 6.2 6.8 0.6 3.2 2 1 1 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor M PF02370.16 gi|352681460|ref|YP_004891984.1| - 3.5 8.5 5.3 81 4.3 0.0 4.0 3 1 0 4 4 3 0 M protein repeat HAUS-augmin3 PF14932.6 gi|352681460|ref|YP_004891984.1| - 3.9 7.0 14.7 1.9e+02 1.4 14.7 2.1 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 DUF3450 PF11932.8 gi|352681460|ref|YP_004891984.1| - 4.8 6.4 12.8 2.4 7.4 5.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) TMF_DNA_bd PF12329.8 gi|352681460|ref|YP_004891984.1| - 5 7.2 5.4 3.4 7.7 0.5 2.2 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Swi5 PF07061.11 gi|352681460|ref|YP_004891984.1| - 5.4 7.2 5.9 33 4.6 0.8 2.9 1 1 1 2 2 2 0 Swi5 CENP-Q PF13094.6 gi|352681460|ref|YP_004891984.1| - 5.7 7.1 13.0 6.9 6.8 3.0 2.2 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Uso1_p115_C PF04871.13 gi|352681460|ref|YP_004891984.1| - 7.7 6.9 9.6 80 3.6 9.6 2.2 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region ATP-cone PF03477.16 gi|352681461|ref|YP_004891985.1| - 3.1e-10 40.5 0.0 3.6e-10 40.3 0.0 1.1 1 0 0 1 1 1 1 ATP cone domain FeoB_N PF02421.18 gi|352681462|ref|YP_004891986.1| - 1.9e-27 95.7 0.0 2.6e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|352681462|ref|YP_004891986.1| - 1.3e-20 73.8 16.2 7.4e-18 64.9 4.6 3.1 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|352681462|ref|YP_004891986.1| - 1.8e-16 60.2 0.0 2.6e-16 59.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP19 PF11022.8 gi|352681462|ref|YP_004891986.1| - 0.2 12.0 0.3 0.2 12.0 0.3 2.7 2 0 0 2 2 2 0 ATP synthase subunit K TusA PF01206.17 gi|352681463|ref|YP_004891987.1| - 3.2e-11 42.9 0.0 3.5e-11 42.8 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|352681463|ref|YP_004891987.1| - 0.00078 19.3 0.0 0.0047 16.8 0.0 1.9 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2249) McrBC PF10117.9 gi|352681464|ref|YP_004891988.1| - 0.032 13.4 0.0 0.046 12.9 0.0 1.3 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component Hjc PF01870.18 gi|352681464|ref|YP_004891988.1| - 0.083 12.9 0.1 0.7 9.9 0.0 2.6 2 1 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) AAA_5 PF07728.14 gi|352681465|ref|YP_004891989.1| - 3e-16 59.7 0.0 3.7e-15 56.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|352681465|ref|YP_004891989.1| - 5.7e-08 33.3 0.0 4.1e-05 24.0 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|352681465|ref|YP_004891989.1| - 4.9e-07 30.2 0.0 9.6e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|352681465|ref|YP_004891989.1| - 1.9e-05 24.9 0.0 0.00017 21.9 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352681465|ref|YP_004891989.1| - 4.1e-05 24.1 0.0 0.00012 22.7 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|352681465|ref|YP_004891989.1| - 0.00022 21.1 0.0 0.015 15.1 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|352681465|ref|YP_004891989.1| - 0.00042 20.1 0.0 0.0038 17.0 0.0 2.2 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|352681465|ref|YP_004891989.1| - 0.00053 20.2 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|352681465|ref|YP_004891989.1| - 0.002 17.9 0.0 0.0041 16.9 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|352681465|ref|YP_004891989.1| - 0.0039 16.8 0.1 0.02 14.5 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|352681465|ref|YP_004891989.1| - 0.01 15.4 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region NTPase_1 PF03266.15 gi|352681465|ref|YP_004891989.1| - 0.011 15.7 0.0 0.042 13.8 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.6 gi|352681465|ref|YP_004891989.1| - 0.011 15.4 0.1 0.035 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|352681465|ref|YP_004891989.1| - 0.012 15.6 0.0 0.093 12.6 0.0 2.1 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|352681465|ref|YP_004891989.1| - 0.018 15.1 0.0 0.045 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|352681465|ref|YP_004891989.1| - 0.027 13.9 0.0 0.043 13.2 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|352681465|ref|YP_004891989.1| - 0.033 14.4 0.0 0.073 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|352681465|ref|YP_004891989.1| - 0.035 14.5 0.0 0.076 13.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Roc PF08477.13 gi|352681465|ref|YP_004891989.1| - 0.055 13.7 0.0 0.34 11.1 0.0 2.0 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_11 PF13086.6 gi|352681465|ref|YP_004891989.1| - 0.07 12.9 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|352681465|ref|YP_004891989.1| - 0.077 12.4 0.0 0.44 9.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_19 PF13245.6 gi|352681465|ref|YP_004891989.1| - 0.08 13.3 0.0 0.26 11.6 0.1 1.8 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|352681465|ref|YP_004891989.1| - 0.082 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain TsaE PF02367.17 gi|352681465|ref|YP_004891989.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|352681465|ref|YP_004891989.1| - 0.14 11.8 0.1 0.4 10.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|352681465|ref|YP_004891989.1| - 0.19 11.0 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_29 PF13555.6 gi|352681465|ref|YP_004891989.1| - 0.2 11.4 0.0 0.49 10.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SRP54 PF00448.22 gi|352681465|ref|YP_004891989.1| - 0.23 11.0 0.0 0.38 10.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain GP88 PF17338.2 gi|352681466|ref|YP_004891990.1| - 5.9e-06 25.9 0.5 9.8e-06 25.2 0.5 1.4 1 0 0 1 1 1 1 Gene product 88 DUF5363 PF17320.2 gi|352681466|ref|YP_004891990.1| - 0.016 15.0 0.3 0.047 13.5 0.3 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5363) CRISPR_Cas6 PF10040.9 gi|352681467|ref|YP_004891991.1| - 5.5e-13 49.4 0.0 8.8e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 YcgR_2 PF12945.7 gi|352681467|ref|YP_004891991.1| - 0.035 14.3 0.2 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 Flagellar protein YcgR HD_6 PF18019.1 gi|352681468|ref|YP_004891992.1| - 4.7e-08 33.4 0.1 1.2e-07 32.1 0.1 1.7 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|352681468|ref|YP_004891992.1| - 1.2e-05 25.5 0.1 1.5e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 HD domain HEAT PF02985.22 gi|352681468|ref|YP_004891992.1| - 0.027 14.7 0.9 1.1 9.7 0.3 2.5 2 0 0 2 2 2 0 HEAT repeat ResIII PF04851.15 gi|352681469|ref|YP_004891993.1| - 2.5e-07 30.9 0.0 4.5e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|352681469|ref|YP_004891993.1| - 1.2e-06 28.4 0.0 1.4e-05 24.9 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|352681469|ref|YP_004891993.1| - 1.5e-06 28.5 0.4 3.3e-06 27.4 0.4 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Phytase-like PF13449.6 gi|352681469|ref|YP_004891993.1| - 0.037 14.0 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 Esterase-like activity of phytase ShK PF01549.24 gi|352681470|ref|YP_004891994.1| - 0.16 12.5 0.2 0.27 11.8 0.2 1.2 1 0 0 1 1 1 0 ShK domain-like DevR PF01905.16 gi|352681471|ref|YP_004891995.1| - 1.2e-75 254.1 0.0 1.4e-75 253.9 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 DUF948 PF06103.11 gi|352681473|ref|YP_004891997.1| - 0.0011 19.2 2.3 0.0038 17.5 2.3 1.8 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF2397 PF09660.10 gi|352681473|ref|YP_004891997.1| - 0.0033 16.4 1.8 0.004 16.1 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2397) LUC7 PF03194.15 gi|352681473|ref|YP_004891997.1| - 0.0078 15.9 0.3 0.0092 15.7 0.3 1.1 1 0 0 1 1 1 1 LUC7 N_terminus TelA PF05816.11 gi|352681473|ref|YP_004891997.1| - 0.0095 15.0 4.7 0.012 14.7 4.7 1.3 1 1 0 1 1 1 1 Toxic anion resistance protein (TelA) DUF1664 PF07889.12 gi|352681473|ref|YP_004891997.1| - 0.014 15.4 1.2 0.019 15.0 1.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Muted PF14942.6 gi|352681473|ref|YP_004891997.1| - 0.017 15.4 1.0 0.022 15.1 1.0 1.3 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Spc7 PF08317.11 gi|352681473|ref|YP_004891997.1| - 0.017 14.0 2.5 0.019 13.8 2.5 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Helo_like_N PF17111.5 gi|352681473|ref|YP_004891997.1| - 0.017 14.5 0.6 0.026 13.9 0.4 1.3 1 1 0 1 1 1 0 Fungal N-terminal domain of STAND proteins XhlA PF10779.9 gi|352681473|ref|YP_004891997.1| - 0.018 15.2 2.1 0.039 14.2 2.1 1.7 1 0 0 1 1 1 0 Haemolysin XhlA DUF489 PF04356.12 gi|352681473|ref|YP_004891997.1| - 0.019 15.0 1.2 0.023 14.7 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF489) Laminin_II PF06009.12 gi|352681473|ref|YP_004891997.1| - 0.02 14.9 1.6 0.02 14.9 1.6 1.6 1 1 1 2 2 2 0 Laminin Domain II HTH_AsnC-type PF13404.6 gi|352681473|ref|YP_004891997.1| - 0.024 14.4 4.0 0.073 12.9 0.1 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Transcrip_act PF04949.13 gi|352681473|ref|YP_004891997.1| - 0.029 14.3 2.8 0.037 13.9 2.8 1.2 1 0 0 1 1 1 0 Transcriptional activator UPF0184 PF03670.13 gi|352681473|ref|YP_004891997.1| - 0.034 14.5 1.3 0.063 13.7 1.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0184) NPV_P10 PF05531.12 gi|352681473|ref|YP_004891997.1| - 0.034 14.6 3.7 0.11 12.9 3.7 2.0 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein BLOC1_2 PF10046.9 gi|352681473|ref|YP_004891997.1| - 0.04 14.2 5.2 1.2 9.5 0.5 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FliJ PF02050.16 gi|352681473|ref|YP_004891997.1| - 0.041 14.1 3.1 0.56 10.4 0.2 2.1 1 1 1 2 2 2 0 Flagellar FliJ protein CorA PF01544.18 gi|352681473|ref|YP_004891997.1| - 0.047 13.0 1.2 0.059 12.7 1.2 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein COG2 PF06148.11 gi|352681473|ref|YP_004891997.1| - 0.049 13.7 1.0 0.083 13.0 0.4 1.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.12 gi|352681473|ref|YP_004891997.1| - 0.051 13.6 2.6 0.09 12.8 2.6 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.11 gi|352681473|ref|YP_004891997.1| - 0.054 13.9 0.5 0.1 13.0 0.5 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) KxDL PF10241.9 gi|352681473|ref|YP_004891997.1| - 0.066 13.5 3.5 0.42 10.9 3.2 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein Atg14 PF10186.9 gi|352681473|ref|YP_004891997.1| - 0.12 11.4 0.6 0.13 11.3 0.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF16 PF01519.16 gi|352681473|ref|YP_004891997.1| - 0.13 12.8 3.6 0.48 10.9 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF4795 PF16043.5 gi|352681473|ref|YP_004891997.1| - 0.13 11.8 4.9 0.22 11.1 4.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Cauli_DNA-bind PF03310.13 gi|352681473|ref|YP_004891997.1| - 0.19 11.8 1.3 0.7 10.0 0.3 1.9 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein HSBP1 PF06825.12 gi|352681473|ref|YP_004891997.1| - 2.6 7.9 10.4 35 4.4 7.6 3.1 2 1 0 2 2 2 0 Heat shock factor binding protein 1 DNA_processg_A PF02481.15 gi|352681474|ref|YP_004891998.1| - 5.3e-36 123.8 0.0 6.4e-36 123.6 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A LDcluster4 PF18306.1 gi|352681474|ref|YP_004891998.1| - 1e-15 57.6 0.0 1.6e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 SLOG cluster4 family Pribosyltran PF00156.27 gi|352681475|ref|YP_004891999.1| - 3.2e-06 26.7 0.0 6.2e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|352681475|ref|YP_004891999.1| - 0.0068 15.9 0.0 0.0094 15.4 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase zf-ribbon_3 PF13248.6 gi|352681475|ref|YP_004891999.1| - 0.0093 15.3 0.9 0.018 14.5 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain PRTase_3 PF15610.6 gi|352681475|ref|YP_004891999.1| - 0.024 13.9 0.0 0.035 13.3 0.0 1.2 1 0 0 1 1 1 0 PRTase ComF-like PRTase_2 PF15609.6 gi|352681475|ref|YP_004891999.1| - 0.057 12.9 0.0 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase zinc_ribbon_2 PF13240.6 gi|352681475|ref|YP_004891999.1| - 0.084 12.6 0.8 0.19 11.5 0.8 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Proteasome PF00227.26 gi|352681477|ref|YP_004892001.1| - 6e-05 22.6 0.0 0.00074 19.1 0.0 2.2 2 1 0 2 2 2 1 Proteasome subunit Radical_SAM PF04055.21 gi|352681482|ref|YP_004892006.1| - 1.9e-15 57.6 0.0 6.1e-15 56.0 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily QRPTase_C PF01729.19 gi|352681483|ref|YP_004892007.1| - 4.3e-36 124.2 0.1 6e-36 123.8 0.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|352681483|ref|YP_004892007.1| - 5e-21 74.6 0.6 1.3e-20 73.2 0.6 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain DUF4240 PF14024.6 gi|352681483|ref|YP_004892007.1| - 0.053 13.7 0.0 0.13 12.5 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4240) ABC_tran PF00005.27 gi|352681486|ref|YP_004892010.1| - 2.6e-16 60.4 0.0 3.9e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|352681486|ref|YP_004892010.1| - 2.1e-08 33.9 0.0 0.00037 20.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|352681486|ref|YP_004892010.1| - 2.2e-08 34.3 0.0 6.9e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|352681486|ref|YP_004892010.1| - 1.3e-06 28.0 0.0 2.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|352681486|ref|YP_004892010.1| - 1.1e-05 26.1 0.0 1.6e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352681486|ref|YP_004892010.1| - 0.00046 20.5 0.0 0.00069 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|352681486|ref|YP_004892010.1| - 0.0014 18.4 0.0 0.0021 17.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|352681486|ref|YP_004892010.1| - 0.0018 18.0 0.0 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|352681486|ref|YP_004892010.1| - 0.0038 17.2 0.1 0.0091 15.9 0.0 1.6 2 0 0 2 2 2 1 NACHT domain AAA_16 PF13191.6 gi|352681486|ref|YP_004892010.1| - 0.015 15.7 0.1 0.029 14.7 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|352681486|ref|YP_004892010.1| - 0.022 13.6 0.1 0.1 11.4 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|352681486|ref|YP_004892010.1| - 0.026 14.1 0.1 0.039 13.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|352681486|ref|YP_004892010.1| - 0.041 13.8 0.0 0.075 12.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 gi|352681486|ref|YP_004892010.1| - 0.064 10.8 0.1 0.091 10.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) cobW PF02492.19 gi|352681486|ref|YP_004892010.1| - 0.083 12.5 0.1 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|352681486|ref|YP_004892010.1| - 0.13 12.2 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_13 PF13166.6 gi|352681486|ref|YP_004892010.1| - 0.13 10.9 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|352681486|ref|YP_004892010.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|352681486|ref|YP_004892010.1| - 0.16 12.3 0.0 0.31 11.4 0.0 1.5 2 0 0 2 2 1 0 AAA domain PT-VENN PF04829.13 gi|352681486|ref|YP_004892010.1| - 0.17 12.0 1.8 2.5 8.2 0.0 2.9 3 0 0 3 3 3 0 Pre-toxin domain with VENN motif T2SSE PF00437.20 gi|352681486|ref|YP_004892010.1| - 0.2 10.7 0.0 0.3 10.1 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein ABC_tran PF00005.27 gi|352681487|ref|YP_004892011.1| - 3.5e-27 95.6 0.0 4.5e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681487|ref|YP_004892011.1| - 4.2e-10 39.9 0.2 7.1e-06 26.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681487|ref|YP_004892011.1| - 4.7e-08 32.7 0.0 0.0027 17.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352681487|ref|YP_004892011.1| - 5.7e-06 26.0 0.0 9.4e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|352681487|ref|YP_004892011.1| - 0.0027 18.2 0.0 0.004 17.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352681487|ref|YP_004892011.1| - 0.0037 17.5 0.2 0.015 15.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|352681487|ref|YP_004892011.1| - 0.018 15.3 0.1 0.21 11.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|352681487|ref|YP_004892011.1| - 0.023 14.3 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|352681487|ref|YP_004892011.1| - 0.026 14.9 0.1 0.059 13.8 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.6 gi|352681487|ref|YP_004892011.1| - 0.037 13.8 0.0 0.053 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|352681487|ref|YP_004892011.1| - 0.047 13.4 0.0 0.083 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|352681487|ref|YP_004892011.1| - 0.055 13.2 0.0 0.1 12.3 0.0 1.3 1 1 0 1 1 1 0 Cytidylate kinase MukB PF04310.12 gi|352681487|ref|YP_004892011.1| - 0.066 13.0 0.0 0.17 11.7 0.0 1.6 2 0 0 2 2 2 0 MukB N-terminal DUF3584 PF12128.8 gi|352681487|ref|YP_004892011.1| - 0.078 10.5 0.0 0.1 10.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|352681487|ref|YP_004892011.1| - 0.09 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|352681487|ref|YP_004892011.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_10 PF12846.7 gi|352681487|ref|YP_004892011.1| - 0.14 11.1 0.0 0.18 10.7 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.22 gi|352681487|ref|YP_004892011.1| - 0.17 12.3 0.0 0.27 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase DUF3987 PF13148.6 gi|352681487|ref|YP_004892011.1| - 0.18 10.8 0.1 0.27 10.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ABC_ATPase PF09818.9 gi|352681487|ref|YP_004892011.1| - 0.21 10.4 0.0 0.77 8.5 0.0 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class FecCD PF01032.18 gi|352681488|ref|YP_004892012.1| - 3.2e-72 243.2 43.6 3.9e-72 242.9 43.6 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|352681490|ref|YP_004892014.1| - 3.4e-19 69.4 0.0 5.1e-19 68.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF2201 PF09967.9 gi|352681490|ref|YP_004892014.1| - 0.035 14.2 0.0 0.079 13.1 0.0 1.6 1 0 0 1 1 1 0 VWA-like domain (DUF2201) SSP160 PF06933.11 gi|352681490|ref|YP_004892014.1| - 0.34 9.1 5.0 0.5 8.5 5.0 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF364 PF04016.12 gi|352681491|ref|YP_004892015.1| - 1.9e-27 95.7 0.0 2.7e-27 95.2 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|352681491|ref|YP_004892015.1| - 1.1e-09 38.4 0.0 1.8e-09 37.7 0.0 1.3 1 0 0 1 1 1 1 Putative heavy-metal chelation NAD_binding_8 PF13450.6 gi|352681491|ref|YP_004892015.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Peptidase_M19 PF01244.21 gi|352681492|ref|YP_004892016.1| - 2.5e-77 260.2 0.0 2.9e-77 259.9 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|352681492|ref|YP_004892016.1| - 0.00013 21.9 0.0 0.0002 21.2 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase DUF4253 PF14062.6 gi|352681492|ref|YP_004892016.1| - 0.065 13.4 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) LigA PF07746.11 gi|352681494|ref|YP_004892018.1| - 0.011 15.8 0.1 0.019 15.1 0.1 1.4 1 0 0 1 1 1 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DsrC PF04358.13 gi|352681494|ref|YP_004892018.1| - 0.057 13.9 0.0 0.079 13.5 0.0 1.2 1 0 0 1 1 1 0 DsrC like protein NAD_kinase PF01513.21 gi|352681495|ref|YP_004892019.1| - 5e-20 71.9 0.0 6.1e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase TrmB PF01978.19 gi|352681495|ref|YP_004892019.1| - 6.9e-09 35.5 0.2 1.5e-08 34.4 0.2 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|352681495|ref|YP_004892019.1| - 4.5e-06 26.1 1.5 4.7e-05 22.9 0.1 2.9 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|352681495|ref|YP_004892019.1| - 2.8e-05 24.1 0.0 5.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.20 gi|352681495|ref|YP_004892019.1| - 5.3e-05 23.0 0.0 0.00021 21.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|352681495|ref|YP_004892019.1| - 0.00012 22.0 2.8 0.00034 20.6 0.3 2.7 2 1 1 3 3 3 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|352681495|ref|YP_004892019.1| - 0.00084 19.6 0.0 0.0018 18.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|352681495|ref|YP_004892019.1| - 0.0012 18.8 0.6 0.0034 17.3 0.0 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|352681495|ref|YP_004892019.1| - 0.0026 17.8 0.0 0.0045 17.1 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.10 gi|352681495|ref|YP_004892019.1| - 0.011 15.6 0.8 0.011 15.6 0.8 2.0 3 0 0 3 3 3 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|352681495|ref|YP_004892019.1| - 0.012 15.5 3.0 0.035 14.0 0.2 2.7 3 0 0 3 3 2 0 MarR family HTH_11 PF08279.12 gi|352681495|ref|YP_004892019.1| - 0.022 14.7 0.4 0.091 12.7 0.0 2.1 2 0 0 2 2 2 0 HTH domain HTH_36 PF13730.6 gi|352681495|ref|YP_004892019.1| - 0.035 14.1 0.0 0.2 11.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_CodY PF08222.11 gi|352681495|ref|YP_004892019.1| - 0.038 13.5 0.1 0.092 12.3 0.1 1.6 1 0 0 1 1 1 0 CodY helix-turn-helix domain GntR PF00392.21 gi|352681495|ref|YP_004892019.1| - 0.064 12.9 0.9 0.13 12.0 0.9 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FaeA PF04703.12 gi|352681495|ref|YP_004892019.1| - 0.069 13.5 0.1 0.21 12.0 0.0 1.8 2 0 0 2 2 1 0 FaeA-like protein RepL PF05732.11 gi|352681495|ref|YP_004892019.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Dimerisation2 PF16864.5 gi|352681495|ref|YP_004892019.1| - 0.2 11.7 0.0 0.41 10.7 0.0 1.4 1 0 0 1 1 1 0 Dimerisation domain Lyase_1 PF00206.20 gi|352681496|ref|YP_004892020.1| - 3.9e-32 111.9 0.0 5.2e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|352681496|ref|YP_004892020.1| - 0.021 14.9 0.0 0.055 13.6 0.0 1.7 2 0 0 2 2 2 0 Adenylosuccinate lyase C-terminal DUF2299 PF10061.9 gi|352681497|ref|YP_004892021.1| - 2.7e-45 153.5 0.0 3e-45 153.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) FlgD_ig PF13860.6 gi|352681498|ref|YP_004892022.1| - 0.11 12.4 0.9 0.26 11.2 0.1 2.1 2 0 0 2 2 2 0 FlgD Ig-like domain NAD_binding_9 PF13454.6 gi|352681499|ref|YP_004892023.1| - 1.3e-05 25.2 0.0 0.0076 16.2 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|352681499|ref|YP_004892023.1| - 2.4e-05 23.7 0.0 5e-05 22.7 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|352681499|ref|YP_004892023.1| - 0.015 15.5 0.0 0.037 14.3 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|352681499|ref|YP_004892023.1| - 0.04 13.5 0.0 0.069 12.7 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|352681499|ref|YP_004892023.1| - 0.071 11.9 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|352681499|ref|YP_004892023.1| - 0.14 11.2 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein RHH_1 PF01402.21 gi|352681500|ref|YP_004892024.1| - 5.9e-09 35.5 0.3 7.3e-09 35.3 0.3 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|352681500|ref|YP_004892024.1| - 2.3e-06 27.8 0.0 2.5e-06 27.7 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_3 PF12651.7 gi|352681500|ref|YP_004892024.1| - 0.0023 17.8 0.2 0.22 11.5 0.0 2.0 2 0 0 2 2 2 2 Ribbon-helix-helix domain ParD_antitoxin PF03693.14 gi|352681500|ref|YP_004892024.1| - 0.0028 18.0 0.0 0.0032 17.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EamA PF00892.20 gi|352681501|ref|YP_004892025.1| - 6.1e-21 75.0 30.1 1.7e-11 44.4 13.5 2.1 2 0 0 2 2 2 2 EamA-like transporter family Methyltransf_11 PF08241.12 gi|352681503|ref|YP_004892027.1| - 0.00011 22.8 0.0 0.00053 20.6 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352681503|ref|YP_004892027.1| - 0.009 16.7 0.0 0.016 16.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MFS_1 PF07690.16 gi|352681505|ref|YP_004892029.1| - 1.3e-09 37.5 57.4 1.5e-09 37.2 49.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|352681505|ref|YP_004892029.1| - 1.3e-05 24.3 19.1 0.0064 15.4 4.2 2.2 1 1 1 2 2 2 2 MFS_1 like family MCM PF00493.23 gi|352681506|ref|YP_004892030.1| - 2.1e-101 337.7 0.0 3e-101 337.2 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|352681506|ref|YP_004892030.1| - 5.2e-38 129.7 0.0 1.1e-37 128.7 0.0 1.5 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|352681506|ref|YP_004892030.1| - 4e-27 94.5 2.3 4e-27 94.5 2.3 2.1 2 0 0 2 2 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|352681506|ref|YP_004892030.1| - 3.1e-13 50.2 0.4 8.2e-13 48.8 0.4 1.7 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|352681506|ref|YP_004892030.1| - 9.5e-10 38.2 0.1 8.6e-07 28.5 0.0 2.5 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|352681506|ref|YP_004892030.1| - 7.2e-07 29.1 0.1 3.5e-06 26.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|352681506|ref|YP_004892030.1| - 4.4e-06 26.7 0.0 1.3e-05 25.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.10 gi|352681506|ref|YP_004892030.1| - 1.3e-05 25.2 1.8 2.5e-05 24.3 1.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain AAA_16 PF13191.6 gi|352681506|ref|YP_004892030.1| - 0.0003 21.2 0.5 0.087 13.2 0.1 2.7 2 0 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|352681506|ref|YP_004892030.1| - 0.00038 20.2 0.1 0.0021 17.8 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|352681506|ref|YP_004892030.1| - 0.0034 17.8 0.1 0.023 15.1 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) HypA PF01155.19 gi|352681506|ref|YP_004892030.1| - 0.014 15.4 0.2 0.032 14.3 0.2 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_30 PF13604.6 gi|352681506|ref|YP_004892030.1| - 0.022 14.5 1.4 0.068 12.9 1.4 1.8 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|352681506|ref|YP_004892030.1| - 0.034 14.1 1.2 2.2 8.2 0.4 2.8 1 1 1 2 2 2 0 NTPase RuvB_N PF05496.12 gi|352681506|ref|YP_004892030.1| - 0.09 12.5 0.5 0.5 10.1 0.5 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain DZR PF12773.7 gi|352681506|ref|YP_004892030.1| - 0.13 12.3 0.5 0.23 11.5 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|352681506|ref|YP_004892030.1| - 0.19 11.5 3.7 9 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain AAA_7 PF12775.7 gi|352681506|ref|YP_004892030.1| - 0.21 11.1 0.0 0.36 10.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Zn_Tnp_IS1595 PF12760.7 gi|352681506|ref|YP_004892030.1| - 0.27 11.2 1.1 9.8 6.3 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|352681506|ref|YP_004892030.1| - 4.2 7.2 5.5 4.1 7.2 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Thioredoxin_4 PF13462.6 gi|352681507|ref|YP_004892031.1| - 7.7e-07 29.4 0.0 1.3e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin DUF4514 PF14986.6 gi|352681507|ref|YP_004892031.1| - 0.39 10.7 2.0 1.2 9.2 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) MFS_1 PF07690.16 gi|352681508|ref|YP_004892032.1| - 1.2e-10 40.8 36.7 1.2e-09 37.6 12.6 2.3 2 0 0 2 2 2 2 Major Facilitator Superfamily AMP-binding PF00501.28 gi|352681509|ref|YP_004892033.1| - 1.3e-48 165.7 0.0 2.9e-48 164.5 0.0 1.6 1 1 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|352681509|ref|YP_004892033.1| - 2.6e-06 27.2 0.1 5.5e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|352681509|ref|YP_004892033.1| - 1.3 10.0 5.1 0.88 10.6 2.4 2.2 2 0 0 2 2 2 0 AMP-binding enzyme C-terminal domain DUF996 PF06195.13 gi|352681510|ref|YP_004892034.1| - 4.3e-33 114.5 22.8 4.3e-33 114.5 22.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF2975 PF11188.8 gi|352681510|ref|YP_004892034.1| - 3.1 7.7 23.3 0.66 9.9 15.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) Pox_A14 PF05767.12 gi|352681510|ref|YP_004892034.1| - 3.8 7.7 18.1 2.2 8.5 0.3 3.6 3 1 0 3 3 3 0 Poxvirus virion envelope protein A14 DUF4129 PF13559.6 gi|352681511|ref|YP_004892035.1| - 2.5e-07 30.9 3.4 2.5e-07 30.9 3.4 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF1003 PF06210.11 gi|352681512|ref|YP_004892036.1| - 1.7 8.8 4.0 21 5.3 0.0 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF1003) AAA_3 PF07726.11 gi|352681513|ref|YP_004892037.1| - 1e-64 216.2 0.0 1.7e-64 215.6 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|352681513|ref|YP_004892037.1| - 2.3e-19 69.0 0.5 8e-19 67.3 0.5 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|352681513|ref|YP_004892037.1| - 9.1e-13 48.4 0.0 5.3e-12 45.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|352681513|ref|YP_004892037.1| - 7.2e-06 25.8 0.0 6.4e-05 22.7 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|352681513|ref|YP_004892037.1| - 0.00013 21.8 0.2 0.0026 17.5 0.0 2.6 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|352681513|ref|YP_004892037.1| - 0.00034 21.0 0.0 0.00073 20.0 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|352681513|ref|YP_004892037.1| - 0.0008 18.8 0.4 0.48 9.8 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|352681513|ref|YP_004892037.1| - 0.0083 16.3 0.0 0.24 11.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain (Cdc48 subfamily) MCM_lid PF17855.1 gi|352681513|ref|YP_004892037.1| - 0.062 13.7 0.1 0.13 12.7 0.1 1.5 1 0 0 1 1 1 0 MCM AAA-lid domain MCM PF00493.23 gi|352681513|ref|YP_004892037.1| - 0.076 12.1 0.0 0.14 11.2 0.0 1.5 1 1 0 1 1 1 0 MCM P-loop domain TsaE PF02367.17 gi|352681513|ref|YP_004892037.1| - 0.16 12.0 0.1 0.29 11.2 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF58 PF01882.18 gi|352681514|ref|YP_004892038.1| - 2e-23 82.5 0.0 6.4e-23 80.8 0.0 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF4231 PF14015.6 gi|352681515|ref|YP_004892039.1| - 0.47 10.9 10.6 0.31 11.5 2.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) CarboxypepD_reg PF13620.6 gi|352681516|ref|YP_004892040.1| - 0.68 10.2 3.4 12 6.2 0.1 3.3 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain Sugar_tr PF00083.24 gi|352681517|ref|YP_004892041.1| - 6.4e-34 117.6 17.7 7.2e-34 117.4 17.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|352681517|ref|YP_004892041.1| - 1.3e-23 83.5 45.4 6e-20 71.5 25.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ERp29 PF07749.12 gi|352681518|ref|YP_004892042.1| - 0.052 14.4 0.1 0.39 11.6 0.1 2.0 2 0 0 2 2 2 0 Endoplasmic reticulum protein ERp29, C-terminal domain ThiC_Rad_SAM PF01964.18 gi|352681519|ref|YP_004892043.1| - 2.8e-156 520.5 0.0 3.2e-156 520.3 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Met_asp_mut_E PF06368.11 gi|352681519|ref|YP_004892043.1| - 0.076 11.5 0.0 0.11 10.9 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) SOR_SNZ PF01680.17 gi|352681520|ref|YP_004892044.1| - 1.8e-94 315.4 2.7 2.7e-94 314.8 2.7 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|352681520|ref|YP_004892044.1| - 3e-06 26.7 3.6 3.6e-06 26.5 0.1 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|352681520|ref|YP_004892044.1| - 0.0011 18.1 1.6 0.13 11.3 0.0 2.8 2 2 0 3 3 3 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|352681520|ref|YP_004892044.1| - 0.0019 17.7 0.7 0.41 10.1 0.1 3.1 2 1 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|352681520|ref|YP_004892044.1| - 0.007 15.8 0.1 0.007 15.8 0.1 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|352681520|ref|YP_004892044.1| - 0.0074 15.5 0.5 0.11 11.6 0.0 2.4 2 1 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|352681520|ref|YP_004892044.1| - 0.015 14.5 0.0 0.23 10.6 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase PA PF02225.22 gi|352681520|ref|YP_004892044.1| - 0.059 13.4 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 PA domain OMPdecase PF00215.24 gi|352681520|ref|YP_004892044.1| - 0.068 12.7 0.3 0.69 9.5 0.0 2.4 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family TetR_C_27 PF17935.1 gi|352681520|ref|YP_004892044.1| - 0.1 12.6 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain SNO PF01174.19 gi|352681521|ref|YP_004892045.1| - 4.1e-48 163.7 0.0 4.8e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|352681521|ref|YP_004892045.1| - 7.5e-10 38.8 0.0 1e-09 38.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 GATase_3 PF07685.14 gi|352681521|ref|YP_004892045.1| - 9.1e-10 38.5 0.0 1.2e-09 38.1 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|352681521|ref|YP_004892045.1| - 1e-06 28.6 0.1 1.8e-05 24.6 0.1 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|352681521|ref|YP_004892045.1| - 0.0034 17.2 0.0 0.0066 16.3 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family Cob_adeno_trans PF01923.18 gi|352681522|ref|YP_004892046.1| - 6.5e-16 58.9 0.0 7.4e-16 58.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase IKKbetaNEMObind PF12179.8 gi|352681522|ref|YP_004892046.1| - 0.19 11.8 0.2 0.33 11.0 0.2 1.3 1 0 0 1 1 1 0 I-kappa-kinase-beta NEMO binding domain Radical_SAM PF04055.21 gi|352681523|ref|YP_004892047.1| - 3.3e-16 60.1 0.0 5e-16 59.5 0.0 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|352681523|ref|YP_004892047.1| - 1e-15 57.9 0.0 1.5e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|352681523|ref|YP_004892047.1| - 3e-10 40.5 0.0 4.7e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain RibD_C PF01872.17 gi|352681523|ref|YP_004892047.1| - 0.055 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 RibD C-terminal domain Hydrolase PF00702.26 gi|352681523|ref|YP_004892047.1| - 0.062 13.6 0.0 0.15 12.3 0.0 1.6 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase QRPTase_C PF01729.19 gi|352681524|ref|YP_004892048.1| - 5.9e-59 198.6 1.8 7.4e-59 198.3 1.8 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|352681524|ref|YP_004892048.1| - 3.4e-21 75.1 0.0 7.7e-21 74.0 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Glu_synthase PF01645.17 gi|352681524|ref|YP_004892048.1| - 0.0074 15.5 0.2 0.039 13.1 0.0 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase DAHP_snth_FXD PF18152.1 gi|352681524|ref|YP_004892048.1| - 0.09 12.6 0.3 5.6 6.9 0.0 2.7 3 0 0 3 3 3 0 DAHP synthase ferredoxin-like domain FAD_binding_2 PF00890.24 gi|352681525|ref|YP_004892049.1| - 6.8e-64 216.5 12.1 8.1e-64 216.2 12.1 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|352681525|ref|YP_004892049.1| - 4.1e-10 39.8 12.1 6e-09 35.9 9.0 2.9 1 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|352681525|ref|YP_004892049.1| - 2.8e-06 26.8 5.4 0.35 10.1 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Succ_DH_flav_C PF02910.20 gi|352681525|ref|YP_004892049.1| - 2.4e-05 24.3 0.0 0.093 12.7 0.0 2.4 1 1 1 2 2 2 2 Fumarate reductase flavoprotein C-term GIDA PF01134.22 gi|352681525|ref|YP_004892049.1| - 7.6e-05 22.0 4.3 0.00081 18.6 4.3 2.1 1 1 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|352681525|ref|YP_004892049.1| - 0.0029 16.4 2.0 0.076 11.7 0.0 2.3 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|352681525|ref|YP_004892049.1| - 0.0032 17.5 3.7 0.03 14.3 2.2 2.8 2 1 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|352681525|ref|YP_004892049.1| - 0.033 14.7 1.9 4.4 7.9 0.5 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|352681525|ref|YP_004892049.1| - 0.62 9.1 3.2 1.8 7.5 1.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NadA PF02445.16 gi|352681526|ref|YP_004892050.1| - 4.4e-103 344.5 0.0 5e-103 344.4 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein CAP_N PF01213.19 gi|352681527|ref|YP_004892051.1| - 0.087 12.3 6.2 0.13 11.8 6.2 1.2 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Mito_fiss_reg PF05308.11 gi|352681527|ref|YP_004892051.1| - 1.7 8.6 6.1 2.8 7.9 6.1 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator Dscam_C PF12355.8 gi|352681527|ref|YP_004892051.1| - 2.5 9.1 4.4 4.7 8.2 4.4 1.4 1 0 0 1 1 1 0 Down syndrome cell adhesion molecule C terminal PRIMA1 PF16101.5 gi|352681527|ref|YP_004892051.1| - 8 6.5 9.0 0.42 10.7 3.4 1.7 2 0 0 2 2 2 0 Proline-rich membrane anchor 1 PALP PF00291.25 gi|352681528|ref|YP_004892052.1| - 1.5e-39 136.2 0.0 1.8e-39 136.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PmbA_TldD PF01523.16 gi|352681529|ref|YP_004892053.1| - 1.8e-28 100.2 0.3 2.6e-28 99.6 0.3 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|352681530|ref|YP_004892054.1| - 4e-48 164.7 0.4 5.1e-48 164.3 0.4 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Ribosomal_L5_C PF00673.21 gi|352681531|ref|YP_004892055.1| - 9.2e-23 80.2 0.0 1.5e-22 79.6 0.0 1.4 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|352681531|ref|YP_004892055.1| - 6e-18 64.9 0.0 1.3e-17 63.8 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein L5 Diphthami_syn_2 PF01902.17 gi|352681532|ref|YP_004892056.1| - 9.8e-23 80.8 0.0 1.2e-22 80.5 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase Usp PF00582.26 gi|352681532|ref|YP_004892056.1| - 0.00072 20.1 0.9 0.001 19.6 0.9 1.2 1 0 0 1 1 1 1 Universal stress protein family Asn_synthase PF00733.21 gi|352681533|ref|YP_004892057.1| - 1.6e-38 133.3 0.0 3.3e-20 73.0 0.0 2.0 2 0 0 2 2 2 2 Asparagine synthase QueC PF06508.13 gi|352681533|ref|YP_004892057.1| - 0.00086 18.9 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC zinc_ribbon_2 PF13240.6 gi|352681533|ref|YP_004892057.1| - 2.3 8.0 6.3 9.4 6.1 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HTH_24 PF13412.6 gi|352681535|ref|YP_004892059.1| - 1.4e-09 37.3 0.0 3.2e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|352681535|ref|YP_004892059.1| - 1.4e-06 28.1 0.2 1.8e-05 24.5 0.0 2.4 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|352681535|ref|YP_004892059.1| - 4.3e-06 26.5 0.0 8.2e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|352681535|ref|YP_004892059.1| - 8.1e-06 25.6 0.2 2.6e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|352681535|ref|YP_004892059.1| - 1.4e-05 24.9 0.0 0.00018 21.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|352681535|ref|YP_004892059.1| - 7.3e-05 22.8 0.1 0.001 19.1 0.0 2.5 2 1 1 3 3 3 1 Helix-turn-helix domain MarR PF01047.22 gi|352681535|ref|YP_004892059.1| - 0.00081 19.3 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|352681535|ref|YP_004892059.1| - 0.0016 18.4 0.0 0.0046 16.9 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_41 PF14502.6 gi|352681535|ref|YP_004892059.1| - 0.0096 15.6 0.0 0.099 12.3 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|352681535|ref|YP_004892059.1| - 0.024 14.4 0.0 0.055 13.3 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain DprA_WH PF17782.1 gi|352681535|ref|YP_004892059.1| - 0.039 14.1 0.0 0.11 12.6 0.0 1.8 3 0 0 3 3 3 0 DprA winged helix domain Rrf2 PF02082.20 gi|352681535|ref|YP_004892059.1| - 0.042 14.2 0.1 0.12 12.7 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|352681535|ref|YP_004892059.1| - 0.062 13.7 0.0 0.28 11.5 0.0 2.0 1 1 1 2 2 2 0 Penicillinase repressor DUF742 PF05331.11 gi|352681535|ref|YP_004892059.1| - 0.088 12.6 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) DUF499 PF04465.12 gi|352681536|ref|YP_004892060.1| - 0.15 9.8 0.1 0.2 9.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF499) AAA PF00004.29 gi|352681537|ref|YP_004892061.1| - 1.2e-07 32.2 0.0 2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|352681537|ref|YP_004892061.1| - 2.8e-06 27.7 0.0 1.2e-05 25.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|352681537|ref|YP_004892061.1| - 1.2e-05 24.8 0.0 0.0036 16.7 0.0 2.4 1 1 0 1 1 1 1 KaiC AAA_5 PF07728.14 gi|352681537|ref|YP_004892061.1| - 8.4e-05 22.6 0.0 0.00026 21.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|352681537|ref|YP_004892061.1| - 0.00012 22.1 0.0 0.00031 20.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352681537|ref|YP_004892061.1| - 0.00022 21.7 0.0 0.0016 18.9 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|352681537|ref|YP_004892061.1| - 0.00029 21.4 0.0 0.00062 20.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|352681537|ref|YP_004892061.1| - 0.0011 18.9 0.0 0.0018 18.3 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TIP49 PF06068.13 gi|352681537|ref|YP_004892061.1| - 0.0013 18.0 0.0 0.0022 17.3 0.0 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain RuvB_N PF05496.12 gi|352681537|ref|YP_004892061.1| - 0.0018 18.0 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|352681537|ref|YP_004892061.1| - 0.0036 17.1 0.1 0.0072 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|352681537|ref|YP_004892061.1| - 0.0038 16.8 0.1 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|352681537|ref|YP_004892061.1| - 0.0044 17.2 0.0 0.013 15.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|352681537|ref|YP_004892061.1| - 0.0045 16.9 0.0 0.04 13.8 0.0 2.3 2 1 0 2 2 2 1 NACHT domain AAA_11 PF13086.6 gi|352681537|ref|YP_004892061.1| - 0.0094 15.8 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|352681537|ref|YP_004892061.1| - 0.0095 16.3 0.0 0.016 15.6 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA_23 PF13476.6 gi|352681537|ref|YP_004892061.1| - 0.017 15.6 0.1 0.029 14.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|352681537|ref|YP_004892061.1| - 0.019 15.4 0.0 0.038 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|352681537|ref|YP_004892061.1| - 0.022 14.2 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain KTI12 PF08433.10 gi|352681537|ref|YP_004892061.1| - 0.054 12.9 0.0 0.14 11.6 0.0 1.6 1 1 1 2 2 2 0 Chromatin associated protein KTI12 CobU PF02283.16 gi|352681537|ref|YP_004892061.1| - 0.091 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase NTPase_1 PF03266.15 gi|352681537|ref|YP_004892061.1| - 0.093 12.6 0.0 0.22 11.4 0.0 1.6 2 0 0 2 2 2 0 NTPase DUF2075 PF09848.9 gi|352681537|ref|YP_004892061.1| - 0.097 11.9 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) IstB_IS21 PF01695.17 gi|352681537|ref|YP_004892061.1| - 0.1 12.3 0.0 1 9.0 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|352681537|ref|YP_004892061.1| - 0.17 11.6 0.1 0.41 10.4 0.1 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain TK PF00265.18 gi|352681537|ref|YP_004892061.1| - 0.2 11.5 0.0 0.69 9.8 0.0 1.8 1 1 0 1 1 1 0 Thymidine kinase Cytidylate_kin PF02224.18 gi|352681537|ref|YP_004892061.1| - 0.22 11.2 0.0 0.37 10.5 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase RNA12 PF10443.9 gi|352681537|ref|YP_004892061.1| - 0.26 10.0 0.0 0.38 9.4 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein SpoIIM PF01944.17 gi|352681538|ref|YP_004892062.1| - 1.9e-07 31.3 11.3 2.7e-07 30.8 11.3 1.3 1 1 0 1 1 1 1 Stage II sporulation protein M TssN PF17555.2 gi|352681538|ref|YP_004892062.1| - 0.7 9.2 5.3 0.89 8.9 5.3 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN PBP PF01161.20 gi|352681539|ref|YP_004892063.1| - 3.4e-38 130.9 0.0 3.9e-38 130.7 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein MFS_1 PF07690.16 gi|352681541|ref|YP_004892065.1| - 2.5e-09 36.5 53.5 1.2e-06 27.8 22.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily BtpA PF03437.15 gi|352681543|ref|YP_004892067.1| - 7e-73 245.2 0.0 8.7e-73 244.9 0.0 1.0 1 0 0 1 1 1 1 BtpA family Bac_luciferase PF00296.20 gi|352681543|ref|YP_004892067.1| - 0.017 14.5 0.2 0.085 12.3 0.0 2.1 2 1 0 2 2 2 0 Luciferase-like monooxygenase GatB_Yqey PF02637.18 gi|352681543|ref|YP_004892067.1| - 0.11 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 GatB domain DUF1952 PF09189.10 gi|352681545|ref|YP_004892069.1| - 0.058 13.2 3.7 1.5 8.7 0.1 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF1952) ASCH PF04266.14 gi|352681547|ref|YP_004892071.1| - 8.4e-12 45.6 0.0 1.4e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 ASCH domain HTH_1 PF00126.27 gi|352681547|ref|YP_004892071.1| - 0.078 12.9 3.2 0.17 11.9 0.1 2.7 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_50 PF18024.1 gi|352681547|ref|YP_004892071.1| - 0.12 12.0 4.2 0.066 12.8 1.5 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|352681548|ref|YP_004892072.1| - 1.4e-06 28.8 0.0 2.6e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily ECH_1 PF00378.20 gi|352681550|ref|YP_004892074.1| - 1.1e-20 74.0 0.0 1.5e-20 73.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|352681550|ref|YP_004892074.1| - 3.1e-14 53.2 0.0 3.7e-14 53.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF1403 PF07183.11 gi|352681550|ref|YP_004892074.1| - 0.022 14.3 0.8 1.1 8.8 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1403) Cytochrom_B_N_2 PF13631.6 gi|352681551|ref|YP_004892075.1| - 1.5e-40 139.0 3.7 1.5e-40 139.0 3.7 3.1 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|352681551|ref|YP_004892075.1| - 2.1e-21 76.6 11.5 5.7e-21 75.2 11.5 1.7 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|352681551|ref|YP_004892075.1| - 0.03 14.6 1.7 0.03 14.6 1.7 3.2 3 0 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD DUF420 PF04238.12 gi|352681551|ref|YP_004892075.1| - 0.072 13.4 6.4 0.15 12.3 4.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF420) TOH_N PF12549.8 gi|352681551|ref|YP_004892075.1| - 0.57 10.1 5.2 1.2 9.1 5.2 1.6 1 0 0 1 1 1 0 Tyrosine hydroxylase N terminal Rieske PF00355.26 gi|352681552|ref|YP_004892076.1| - 8.2e-12 44.9 0.0 1.3e-11 44.3 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Big_1 PF02369.16 gi|352681552|ref|YP_004892076.1| - 0.1 12.6 0.6 4.7 7.3 0.1 2.6 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) EB_dh PF09459.10 gi|352681553|ref|YP_004892077.1| - 1.3e-62 212.0 0.1 1.6e-62 211.7 0.1 1.1 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase Gemini_mov PF01708.16 gi|352681553|ref|YP_004892077.1| - 0.027 14.2 0.4 0.08 12.7 0.4 1.8 1 0 0 1 1 1 0 Geminivirus putative movement protein Mucin PF01456.17 gi|352681553|ref|YP_004892077.1| - 0.49 10.4 18.4 0.94 9.5 18.4 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF3439 PF11921.8 gi|352681553|ref|YP_004892077.1| - 0.54 10.2 11.5 1.2 9.1 11.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) HTH_20 PF12840.7 gi|352681555|ref|YP_004892079.1| - 3.8e-09 36.5 0.0 1e-08 35.1 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|352681555|ref|YP_004892079.1| - 3e-08 33.4 0.1 6.3e-08 32.4 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|352681555|ref|YP_004892079.1| - 2e-06 27.6 0.0 2.9e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|352681555|ref|YP_004892079.1| - 3.6e-05 24.0 0.0 5.9e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_12 PF08461.10 gi|352681555|ref|YP_004892079.1| - 0.00011 22.1 0.1 0.00019 21.3 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|352681555|ref|YP_004892079.1| - 0.00017 21.5 0.1 0.00094 19.1 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|352681555|ref|YP_004892079.1| - 0.0076 16.2 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|352681555|ref|YP_004892079.1| - 0.0077 16.3 0.1 0.017 15.3 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|352681555|ref|YP_004892079.1| - 0.0087 15.9 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF4423 PF14394.6 gi|352681555|ref|YP_004892079.1| - 0.021 14.6 0.0 0.027 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.16 gi|352681555|ref|YP_004892079.1| - 0.027 14.2 0.0 0.068 12.9 0.0 1.7 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|352681555|ref|YP_004892079.1| - 0.041 13.4 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|352681555|ref|YP_004892079.1| - 0.042 14.0 0.0 0.057 13.5 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain Replic_Relax PF13814.6 gi|352681555|ref|YP_004892079.1| - 0.054 13.6 0.0 0.065 13.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_IclR PF09339.10 gi|352681555|ref|YP_004892079.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|352681555|ref|YP_004892079.1| - 0.12 12.7 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TENA_THI-4 PF03070.16 gi|352681556|ref|YP_004892080.1| - 9.2e-15 55.0 0.0 1.3e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 TENA/THI-4/PQQC family PKS_DE PF18369.1 gi|352681556|ref|YP_004892080.1| - 0.062 13.9 4.1 0.56 10.8 0.0 3.8 4 0 0 4 4 4 0 Polyketide synthase dimerisation element domain TENA_THI-4 PF03070.16 gi|352681557|ref|YP_004892081.1| - 5.1e-46 157.1 0.0 5.9e-46 156.9 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Haem_oxygenas_2 PF14518.6 gi|352681557|ref|YP_004892081.1| - 0.0023 17.7 0.2 0.0031 17.3 0.2 1.3 1 0 0 1 1 1 1 Iron-containing redox enzyme Ald_Xan_dh_C2 PF02738.18 gi|352681558|ref|YP_004892082.1| - 3.5e-119 398.8 0.1 4.6e-119 398.4 0.1 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|352681558|ref|YP_004892082.1| - 1.6e-22 79.9 0.1 5.4e-21 75.0 0.1 2.6 1 1 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Tenui_NCP PF04876.12 gi|352681558|ref|YP_004892082.1| - 0.21 11.1 0.0 0.5 9.9 0.0 1.5 2 0 0 2 2 2 0 Tenuivirus major non-capsid protein Fer2_2 PF01799.20 gi|352681559|ref|YP_004892083.1| - 1.5e-26 92.2 0.2 1.5e-26 92.2 0.2 1.7 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|352681559|ref|YP_004892083.1| - 6.2e-06 26.1 1.9 1.9e-05 24.5 0.1 2.1 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|352681559|ref|YP_004892083.1| - 0.0018 18.2 2.0 0.0018 18.2 2.0 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DUF1450 PF07293.11 gi|352681559|ref|YP_004892083.1| - 0.18 11.7 2.3 5.1 7.0 1.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1450) FAD_binding_5 PF00941.21 gi|352681560|ref|YP_004892084.1| - 6.4e-49 166.0 0.0 9.3e-49 165.4 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|352681560|ref|YP_004892084.1| - 1.3e-23 83.2 1.8 2.2e-23 82.3 1.8 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Secapin PF17521.2 gi|352681560|ref|YP_004892084.1| - 0.048 13.5 0.0 0.092 12.6 0.0 1.4 1 0 0 1 1 1 0 Honey bee peptides Glu_dehyd_C PF16912.5 gi|352681561|ref|YP_004892085.1| - 4e-57 193.1 0.0 5.1e-57 192.8 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|352681561|ref|YP_004892085.1| - 5.3e-12 45.6 0.0 9.2e-12 44.8 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|352681561|ref|YP_004892085.1| - 6.7e-09 35.8 0.0 1.1e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_3 PF01494.19 gi|352681561|ref|YP_004892085.1| - 0.0024 17.2 0.3 0.0037 16.6 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Shikimate_DH PF01488.20 gi|352681561|ref|YP_004892085.1| - 0.015 15.4 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|352681561|ref|YP_004892085.1| - 0.015 14.6 0.1 0.025 13.9 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|352681561|ref|YP_004892085.1| - 0.052 12.8 0.1 0.081 12.1 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Choline_kin_N PF04428.14 gi|352681561|ref|YP_004892085.1| - 0.08 12.6 0.0 0.2 11.3 0.0 1.7 1 0 0 1 1 1 0 Choline kinase N terminus Phosphoesterase PF04185.14 gi|352681562|ref|YP_004892086.1| - 2.7e-66 224.2 0.0 3.3e-66 223.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoesterase family Creatininase PF02633.14 gi|352681563|ref|YP_004892087.1| - 1.2e-67 227.9 0.1 1.4e-67 227.7 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Pyr_redox_2 PF07992.14 gi|352681565|ref|YP_004892089.1| - 5.5e-57 193.2 5.7 5.5e-57 193.2 5.7 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|352681565|ref|YP_004892089.1| - 1.3e-26 93.1 0.0 2.5e-26 92.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|352681565|ref|YP_004892089.1| - 1.5e-19 70.4 0.8 1.5e-19 70.4 0.8 2.9 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|352681565|ref|YP_004892089.1| - 2e-18 66.7 0.0 1.8e-15 57.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|352681565|ref|YP_004892089.1| - 7e-13 48.4 8.6 5.6e-08 32.3 0.0 3.2 2 1 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|352681565|ref|YP_004892089.1| - 7.6e-08 31.5 14.5 0.0052 15.5 0.4 4.2 3 1 1 5 5 5 3 HI0933-like protein FAD_oxidored PF12831.7 gi|352681565|ref|YP_004892089.1| - 1.9e-06 27.5 14.4 3.6e-05 23.3 0.5 3.4 4 0 0 4 4 4 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|352681565|ref|YP_004892089.1| - 4.7e-06 25.9 15.4 0.00032 19.9 0.8 3.4 3 1 0 3 3 3 2 FAD binding domain NAD_binding_7 PF13241.6 gi|352681565|ref|YP_004892089.1| - 2.1e-05 24.9 1.5 0.0021 18.5 0.2 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|352681565|ref|YP_004892089.1| - 6.1e-05 23.2 9.0 0.053 13.8 0.3 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|352681565|ref|YP_004892089.1| - 0.00015 21.4 0.4 0.00015 21.4 0.4 1.9 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.17 gi|352681565|ref|YP_004892089.1| - 0.00025 20.4 0.8 0.079 12.2 0.1 2.4 2 0 0 2 2 2 2 Thi4 family K_oxygenase PF13434.6 gi|352681565|ref|YP_004892089.1| - 0.00035 19.8 1.1 0.15 11.2 0.0 2.6 3 0 0 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|352681565|ref|YP_004892089.1| - 0.00095 18.8 24.2 0.058 13.0 3.6 3.7 2 2 2 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|352681565|ref|YP_004892089.1| - 0.0016 18.3 1.1 0.0016 18.3 1.1 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|352681565|ref|YP_004892089.1| - 0.0093 15.3 0.3 0.0093 15.3 0.3 2.0 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|352681565|ref|YP_004892089.1| - 0.022 14.0 10.0 0.21 10.8 0.5 2.4 2 1 0 2 2 2 0 FAD binding domain Amino_oxidase PF01593.24 gi|352681565|ref|YP_004892089.1| - 0.034 13.4 0.4 0.5 9.6 0.1 2.2 1 1 1 2 2 2 0 Flavin containing amine oxidoreductase TrkA_N PF02254.18 gi|352681565|ref|YP_004892089.1| - 0.044 14.0 3.6 0.38 11.0 0.2 2.7 2 0 0 2 2 2 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|352681565|ref|YP_004892089.1| - 0.083 12.2 0.5 0.35 10.2 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|352681565|ref|YP_004892089.1| - 0.16 11.3 0.4 8.6 5.6 0.1 2.3 2 0 0 2 2 2 0 ThiF family Trp_halogenase PF04820.14 gi|352681565|ref|YP_004892089.1| - 1.1 8.0 4.6 5.6 5.7 2.3 2.3 2 0 0 2 2 2 0 Tryptophan halogenase adh_short PF00106.25 gi|352681565|ref|YP_004892089.1| - 1.8 7.9 5.6 1.8 7.9 0.3 2.8 2 1 1 3 3 3 0 short chain dehydrogenase Lycopene_cycl PF05834.12 gi|352681565|ref|YP_004892089.1| - 2.4 7.1 8.6 1.4 7.8 1.2 2.7 2 1 1 3 3 3 0 Lycopene cyclase protein RAMP4 PF06624.12 gi|352681566|ref|YP_004892090.1| - 0.3 11.2 2.0 0.35 11.0 0.0 2.1 3 0 0 3 3 3 0 Ribosome associated membrane protein RAMP4 Anti-TRAP PF15777.5 gi|352681568|ref|YP_004892092.1| - 0.17 11.9 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein His_Phos_1 PF00300.22 gi|352681569|ref|YP_004892093.1| - 4e-11 43.0 1.9 9.9e-11 41.7 0.3 1.9 2 0 0 2 2 2 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.22 gi|352681569|ref|YP_004892093.1| - 0.054 12.8 0.0 0.065 12.6 0.0 1.1 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) HSBP1 PF06825.12 gi|352681570|ref|YP_004892094.1| - 9.1e-14 51.1 19.6 0.00025 20.8 1.3 5.5 1 1 4 5 5 5 4 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|352681570|ref|YP_004892094.1| - 3.4e-08 33.6 14.2 0.0038 17.4 5.1 3.5 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|352681570|ref|YP_004892094.1| - 1.4e-07 31.9 20.0 0.00012 22.4 2.7 3.7 2 1 1 3 3 2 2 Nucleopolyhedrovirus P10 protein Apolipoprotein PF01442.18 gi|352681570|ref|YP_004892094.1| - 1.5e-07 31.5 16.1 1.1e-06 28.7 16.1 2.5 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF1664 PF07889.12 gi|352681570|ref|YP_004892094.1| - 2e-07 31.1 16.3 0.00048 20.2 5.0 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|352681570|ref|YP_004892094.1| - 3.4e-07 29.9 26.0 2.8e-05 23.6 8.9 1.9 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) Baculo_PEP_C PF04513.12 gi|352681570|ref|YP_004892094.1| - 1.1e-06 28.8 14.2 0.0028 17.7 4.4 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1515 PF07439.11 gi|352681570|ref|YP_004892094.1| - 1.2e-06 28.5 17.7 0.00047 20.2 0.9 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF1515) ABC_tran_CTD PF16326.5 gi|352681570|ref|YP_004892094.1| - 1.2e-06 28.7 9.9 0.04 14.2 0.7 3.6 1 1 2 3 3 3 3 ABC transporter C-terminal domain AAA_13 PF13166.6 gi|352681570|ref|YP_004892094.1| - 1.8e-06 26.9 11.9 2.3e-06 26.6 11.9 1.1 1 0 0 1 1 1 1 AAA domain FliD_C PF07195.12 gi|352681570|ref|YP_004892094.1| - 3.5e-06 26.6 10.5 0.014 14.8 0.8 2.8 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus KxDL PF10241.9 gi|352681570|ref|YP_004892094.1| - 1.4e-05 25.3 11.5 0.024 14.9 1.7 3.6 1 1 2 3 3 3 2 Uncharacterized conserved protein Exonuc_VII_L PF02601.15 gi|352681570|ref|YP_004892094.1| - 1.8e-05 24.5 5.8 2.1e-05 24.2 5.8 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit SHE3 PF17078.5 gi|352681570|ref|YP_004892094.1| - 3.6e-05 23.6 8.6 0.0041 16.9 8.5 2.2 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 HMMR_N PF15905.5 gi|352681570|ref|YP_004892094.1| - 5.1e-05 22.9 12.1 9.4e-05 22.0 10.9 1.8 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal ApoLp-III PF07464.11 gi|352681570|ref|YP_004892094.1| - 6.8e-05 23.0 10.7 0.02 15.0 3.6 2.6 1 1 1 2 2 2 2 Apolipophorin-III precursor (apoLp-III) GAS PF13851.6 gi|352681570|ref|YP_004892094.1| - 7.8e-05 22.1 9.8 0.00018 20.9 9.7 1.6 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding TBCC_N PF16752.5 gi|352681570|ref|YP_004892094.1| - 9.7e-05 22.8 8.7 0.016 15.6 1.8 2.6 1 1 1 2 2 2 2 Tubulin-specific chaperone C N-terminal domain TPR_MLP1_2 PF07926.12 gi|352681570|ref|YP_004892094.1| - 0.00013 22.0 10.7 0.02 14.9 3.0 2.7 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Nup54 PF13874.6 gi|352681570|ref|YP_004892094.1| - 0.00017 21.7 11.8 0.00036 20.7 5.4 2.4 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 TACC_C PF05010.14 gi|352681570|ref|YP_004892094.1| - 0.00018 21.4 8.9 0.014 15.2 1.9 2.9 1 1 2 3 3 3 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF1848 PF08902.11 gi|352681570|ref|YP_004892094.1| - 0.00019 21.3 1.7 0.00025 20.8 1.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1848) Prominin PF05478.11 gi|352681570|ref|YP_004892094.1| - 0.0002 19.5 8.6 0.00023 19.3 8.6 1.0 1 0 0 1 1 1 1 Prominin Laminin_II PF06009.12 gi|352681570|ref|YP_004892094.1| - 0.0002 21.4 16.3 0.0099 15.9 1.5 3.4 1 1 2 3 3 3 2 Laminin Domain II Snapin_Pallidin PF14712.6 gi|352681570|ref|YP_004892094.1| - 0.00026 21.4 17.1 0.0099 16.3 4.1 3.8 1 1 3 4 4 4 1 Snapin/Pallidin MscS_porin PF12795.7 gi|352681570|ref|YP_004892094.1| - 0.00029 20.5 15.6 0.054 13.0 2.5 3.0 1 1 0 2 2 2 1 Mechanosensitive ion channel porin domain HalX PF08663.10 gi|352681570|ref|YP_004892094.1| - 0.00029 21.1 20.5 2 8.8 0.3 5.3 2 1 2 4 4 3 0 HalX domain DUF3584 PF12128.8 gi|352681570|ref|YP_004892094.1| - 0.00036 18.2 10.7 0.00048 17.8 10.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Fzo_mitofusin PF04799.13 gi|352681570|ref|YP_004892094.1| - 0.00041 19.9 10.7 0.11 12.0 2.3 3.3 1 1 2 3 3 3 1 fzo-like conserved region COG2 PF06148.11 gi|352681570|ref|YP_004892094.1| - 0.00044 20.3 12.7 0.044 13.9 2.6 2.7 1 1 1 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 Mt_ATP-synt_D PF05873.12 gi|352681570|ref|YP_004892094.1| - 0.00046 20.1 4.8 0.19 11.6 0.3 2.8 1 1 1 2 2 2 1 ATP synthase D chain, mitochondrial (ATP5H) Uds1 PF15456.6 gi|352681570|ref|YP_004892094.1| - 0.00052 20.2 14.3 0.41 10.8 14.3 2.9 1 1 0 1 1 1 1 Up-regulated During Septation Prefoldin_2 PF01920.20 gi|352681570|ref|YP_004892094.1| - 0.00053 19.9 14.0 0.35 10.8 0.2 4.2 2 1 3 5 5 4 3 Prefoldin subunit Transcrip_act PF04949.13 gi|352681570|ref|YP_004892094.1| - 0.00054 19.9 16.8 0.019 14.8 6.7 2.9 1 1 2 3 3 3 2 Transcriptional activator MtrG PF04210.13 gi|352681570|ref|YP_004892094.1| - 0.00057 19.7 9.1 1.3 8.9 0.1 4.7 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G Spc7 PF08317.11 gi|352681570|ref|YP_004892094.1| - 0.00058 18.8 15.6 0.012 14.5 5.3 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF2937 PF11157.8 gi|352681570|ref|YP_004892094.1| - 0.00064 19.5 5.9 0.018 14.7 0.7 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF2937) DUF2959 PF11172.8 gi|352681570|ref|YP_004892094.1| - 0.00071 19.8 7.1 0.22 11.6 3.5 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF2959) DUF4795 PF16043.5 gi|352681570|ref|YP_004892094.1| - 0.00073 19.2 13.1 0.016 14.8 13.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) Phage_Mu_Gam PF07352.12 gi|352681570|ref|YP_004892094.1| - 0.00078 19.4 11.1 0.59 10.0 4.0 3.2 1 1 1 2 2 2 2 Bacteriophage Mu Gam like protein CdvA PF18822.1 gi|352681570|ref|YP_004892094.1| - 0.00089 19.1 19.4 0.24 11.2 3.8 3.6 2 1 1 4 4 3 3 CdvA-like coiled-coil domain DUF16 PF01519.16 gi|352681570|ref|YP_004892094.1| - 0.00096 19.6 14.7 1.8 9.1 14.0 3.1 1 1 0 1 1 1 0 Protein of unknown function DUF16 DinI PF06183.13 gi|352681570|ref|YP_004892094.1| - 0.001 19.4 2.4 6.2 7.2 0.0 4.6 3 1 1 4 4 4 0 DinI-like family DUF148 PF02520.17 gi|352681570|ref|YP_004892094.1| - 0.0011 19.1 13.2 0.0076 16.4 2.7 2.5 2 1 1 3 3 2 1 Domain of unknown function DUF148 TRPM_tetra PF16519.5 gi|352681570|ref|YP_004892094.1| - 0.0013 18.8 10.3 0.084 13.0 1.2 4.1 1 1 4 5 5 4 1 Tetramerisation domain of TRPM DUF4763 PF15960.5 gi|352681570|ref|YP_004892094.1| - 0.0014 18.0 5.5 0.18 11.1 5.5 2.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4763) DUF3552 PF12072.8 gi|352681570|ref|YP_004892094.1| - 0.0015 18.0 18.9 0.0027 17.2 7.8 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) CLZ PF16526.5 gi|352681570|ref|YP_004892094.1| - 0.0017 18.7 12.9 0.45 10.9 1.2 3.4 1 1 2 3 3 3 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Muted PF14942.6 gi|352681570|ref|YP_004892094.1| - 0.0018 18.7 9.5 0.057 13.8 9.3 2.2 1 1 1 2 2 2 2 Organelle biogenesis, Muted-like protein TMPIT PF07851.13 gi|352681570|ref|YP_004892094.1| - 0.0019 17.5 7.0 0.14 11.4 0.8 2.1 1 1 1 2 2 2 2 TMPIT-like protein XhlA PF10779.9 gi|352681570|ref|YP_004892094.1| - 0.0024 18.0 22.8 0.33 11.2 4.9 4.1 1 1 4 5 5 5 2 Haemolysin XhlA FlaC_arch PF05377.11 gi|352681570|ref|YP_004892094.1| - 0.0025 18.2 13.9 2.2 8.8 0.1 4.7 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.9 gi|352681570|ref|YP_004892094.1| - 0.0028 17.9 11.8 0.34 11.2 3.7 3.4 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Lebercilin PF15619.6 gi|352681570|ref|YP_004892094.1| - 0.003 17.3 15.7 0.11 12.2 9.7 3.3 1 1 1 3 3 3 1 Ciliary protein causing Leber congenital amaurosis disease Lipoprotein_7 PF01540.16 gi|352681570|ref|YP_004892094.1| - 0.003 16.9 7.0 0.004 16.5 7.0 1.3 1 0 0 1 1 1 1 Adhesin lipoprotein MCPsignal PF00015.21 gi|352681570|ref|YP_004892094.1| - 0.003 17.4 12.4 0.0067 16.3 10.3 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain TMF_DNA_bd PF12329.8 gi|352681570|ref|YP_004892094.1| - 0.0032 17.4 18.9 0.57 10.2 1.0 4.7 1 1 2 3 3 3 1 TATA element modulatory factor 1 DNA binding RmuC PF02646.16 gi|352681570|ref|YP_004892094.1| - 0.0033 16.6 10.7 0.063 12.4 1.4 2.9 1 1 3 4 4 4 2 RmuC family WASH_WAHD PF11945.8 gi|352681570|ref|YP_004892094.1| - 0.0033 17.0 13.2 0.093 12.2 10.5 2.3 1 1 2 3 3 3 1 WAHD domain of WASH complex YlqD PF11068.8 gi|352681570|ref|YP_004892094.1| - 0.0046 17.3 8.8 0.36 11.2 1.3 2.3 1 1 1 2 2 2 2 YlqD protein Cnn_1N PF07989.11 gi|352681570|ref|YP_004892094.1| - 0.0047 17.0 9.3 0.0085 16.2 1.0 2.8 2 1 0 2 2 2 1 Centrosomin N-terminal motif 1 DUF4618 PF15397.6 gi|352681570|ref|YP_004892094.1| - 0.0049 16.3 9.6 0.047 13.1 4.5 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) APG17 PF04108.12 gi|352681570|ref|YP_004892094.1| - 0.005 16.0 11.1 0.0093 15.1 9.9 1.8 1 1 0 1 1 1 1 Autophagy protein Apg17 Fib_alpha PF08702.10 gi|352681570|ref|YP_004892094.1| - 0.0053 17.0 13.6 0.15 12.3 4.0 2.5 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family Spectrin PF00435.21 gi|352681570|ref|YP_004892094.1| - 0.0055 17.2 8.1 0.045 14.2 2.7 2.7 1 1 1 2 2 2 1 Spectrin repeat Phage_GPO PF05929.11 gi|352681570|ref|YP_004892094.1| - 0.0055 16.4 8.8 0.14 11.7 1.7 2.3 1 1 1 2 2 2 1 Phage capsid scaffolding protein (GPO) serine peptidase T3SSipB PF16535.5 gi|352681570|ref|YP_004892094.1| - 0.006 17.1 7.6 0.49 10.8 1.3 2.5 1 1 1 2 2 2 1 Type III cell invasion protein SipB TMCO5 PF14992.6 gi|352681570|ref|YP_004892094.1| - 0.0063 16.1 9.7 0.048 13.2 9.5 2.0 1 1 1 2 2 2 2 TMCO5 family Golgin_A5 PF09787.9 gi|352681570|ref|YP_004892094.1| - 0.0068 15.9 13.4 0.011 15.3 13.4 1.3 1 0 0 1 1 1 1 Golgin subfamily A member 5 Trimer_CC PF08954.11 gi|352681570|ref|YP_004892094.1| - 0.0069 15.9 14.3 0.13 11.8 0.6 4.3 1 1 4 5 5 4 1 Trimerisation motif Tropomyosin_1 PF12718.7 gi|352681570|ref|YP_004892094.1| - 0.0077 16.4 17.5 0.011 15.9 8.5 2.6 2 1 1 3 3 2 1 Tropomyosin like PriC PF07445.12 gi|352681570|ref|YP_004892094.1| - 0.0083 16.1 6.1 0.36 10.7 2.2 2.5 1 1 1 2 2 2 1 Primosomal replication protein priC GCN5L1 PF06320.13 gi|352681570|ref|YP_004892094.1| - 0.0087 16.2 7.8 30 4.8 7.6 3.1 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF2884 PF11101.8 gi|352681570|ref|YP_004892094.1| - 0.0088 15.6 6.9 0.025 14.1 5.5 2.1 1 1 0 2 2 1 1 Protein of unknown function (DUF2884) KMP11 PF03037.16 gi|352681570|ref|YP_004892094.1| - 0.0092 16.7 0.8 3.6 8.4 0.2 2.5 1 1 1 2 2 2 0 Kinetoplastid membrane protein 11 DUF2703 PF10865.8 gi|352681570|ref|YP_004892094.1| - 0.0097 16.1 3.8 1.9 8.7 0.3 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2703) Vip3A_N PF12495.8 gi|352681570|ref|YP_004892094.1| - 0.01 15.7 4.5 0.065 13.1 3.6 2.1 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal Allexi_40kDa PF05549.11 gi|352681570|ref|YP_004892094.1| - 0.011 15.2 8.7 0.045 13.2 1.3 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein HrpB7 PF09486.10 gi|352681570|ref|YP_004892094.1| - 0.011 16.1 19.0 0.13 12.7 6.9 3.6 1 1 2 3 3 3 0 Bacterial type III secretion protein (HrpB7) FliJ PF02050.16 gi|352681570|ref|YP_004892094.1| - 0.012 15.9 5.1 0.12 12.6 1.3 2.5 1 1 1 2 2 2 0 Flagellar FliJ protein WDCP PF15390.6 gi|352681570|ref|YP_004892094.1| - 0.012 14.1 2.7 0.014 13.8 2.7 1.2 1 0 0 1 1 1 0 WD repeat and coiled-coil-containing protein family DUF2203 PF09969.9 gi|352681570|ref|YP_004892094.1| - 0.012 16.4 9.8 0.12 13.2 2.3 2.5 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) TMP_2 PF06791.13 gi|352681570|ref|YP_004892094.1| - 0.012 15.3 0.5 5.2 6.7 0.1 2.8 1 1 1 2 2 2 0 Prophage tail length tape measure protein Syntaxin PF00804.25 gi|352681570|ref|YP_004892094.1| - 0.013 15.2 14.4 0.041 13.6 3.4 2.2 1 1 1 2 2 2 0 Syntaxin FlxA PF14282.6 gi|352681570|ref|YP_004892094.1| - 0.013 15.5 9.3 0.24 11.4 2.0 2.8 1 1 2 3 3 3 0 FlxA-like protein DUF3496 PF12001.8 gi|352681570|ref|YP_004892094.1| - 0.013 15.8 5.0 6.3 7.2 0.1 3.7 1 1 1 3 3 3 0 Domain of unknown function (DUF3496) Atg14 PF10186.9 gi|352681570|ref|YP_004892094.1| - 0.014 14.5 13.6 0.052 12.6 13.6 1.8 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF1640 PF07798.11 gi|352681570|ref|YP_004892094.1| - 0.014 15.5 19.8 0.053 13.6 11.4 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1640) DUF2130 PF09903.9 gi|352681570|ref|YP_004892094.1| - 0.015 14.6 10.3 0.2 10.9 1.8 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) IFT57 PF10498.9 gi|352681570|ref|YP_004892094.1| - 0.016 14.2 9.7 0.11 11.5 9.5 2.0 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 SKA2 PF16740.5 gi|352681570|ref|YP_004892094.1| - 0.016 15.0 10.0 0.072 12.9 3.5 2.5 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF3782 PF12644.7 gi|352681570|ref|YP_004892094.1| - 0.016 15.3 11.6 9.9e+02 -0.0 9.8 4.7 1 1 1 2 2 0 0 Protein of unknown function (DUF3782) DUF3450 PF11932.8 gi|352681570|ref|YP_004892094.1| - 0.017 14.5 15.1 0.12 11.7 5.5 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) MbeD_MobD PF04899.12 gi|352681570|ref|YP_004892094.1| - 0.017 15.2 5.5 4.1 7.6 0.6 4.0 1 1 1 3 3 3 0 MbeD/MobD like DUF4455 PF14643.6 gi|352681570|ref|YP_004892094.1| - 0.017 13.8 9.7 0.23 10.1 9.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) DUF2802 PF10975.8 gi|352681570|ref|YP_004892094.1| - 0.018 15.1 7.7 5.5e+02 0.8 7.7 4.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) Mer2 PF09074.10 gi|352681570|ref|YP_004892094.1| - 0.02 14.7 10.4 0.059 13.2 10.4 1.7 1 1 0 1 1 1 0 Mer2 GCP_N_terminal PF17681.1 gi|352681570|ref|YP_004892094.1| - 0.02 14.5 1.3 0.068 12.8 1.3 1.7 1 1 0 1 1 1 0 Gamma tubulin complex component N-terminal Matrilin_ccoil PF10393.9 gi|352681570|ref|YP_004892094.1| - 0.021 14.7 9.0 5.2 7.0 0.1 5.1 1 1 3 4 4 3 0 Trimeric coiled-coil oligomerisation domain of matrilin Phasin PF05597.11 gi|352681570|ref|YP_004892094.1| - 0.022 14.8 16.2 0.4 10.7 5.2 3.4 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) YabA PF06156.13 gi|352681570|ref|YP_004892094.1| - 0.022 15.4 10.4 0.46 11.1 1.9 3.3 1 1 1 2 2 2 0 Initiation control protein YabA DUF4200 PF13863.6 gi|352681570|ref|YP_004892094.1| - 0.023 15.1 14.2 1.3 9.4 7.4 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Zw10 PF06248.13 gi|352681570|ref|YP_004892094.1| - 0.023 13.3 10.6 0.025 13.2 9.3 1.6 1 1 1 2 2 2 0 Centromere/kinetochore Zw10 DUF1351 PF07083.11 gi|352681570|ref|YP_004892094.1| - 0.025 14.4 12.0 0.093 12.5 12.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1351) WXG100 PF06013.12 gi|352681570|ref|YP_004892094.1| - 0.025 14.8 6.9 5.3 7.3 0.8 4.1 1 1 1 2 2 2 0 Proteins of 100 residues with WXG DivIC PF04977.15 gi|352681570|ref|YP_004892094.1| - 0.025 14.3 16.1 1.8 8.4 0.7 4.5 1 1 2 3 3 3 0 Septum formation initiator Prefoldin_3 PF13758.6 gi|352681570|ref|YP_004892094.1| - 0.026 14.5 16.2 0.89 9.6 2.7 4.1 2 2 2 4 4 4 0 Prefoldin subunit LXG PF04740.12 gi|352681570|ref|YP_004892094.1| - 0.029 14.1 11.2 0.11 12.2 5.5 2.3 1 1 1 2 2 2 0 LXG domain of WXG superfamily Uso1_p115_C PF04871.13 gi|352681570|ref|YP_004892094.1| - 0.029 14.7 8.5 5.4 7.4 6.6 2.7 1 1 1 2 2 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF4351 PF14261.6 gi|352681570|ref|YP_004892094.1| - 0.03 14.4 4.4 18 5.5 0.1 4.0 1 1 2 4 4 3 0 Domain of unknown function (DUF4351) Prefoldin PF02996.17 gi|352681570|ref|YP_004892094.1| - 0.032 14.1 15.3 0.71 9.8 1.0 4.1 1 1 0 3 3 3 0 Prefoldin subunit UvrB PF12344.8 gi|352681570|ref|YP_004892094.1| - 0.033 14.0 13.9 3 7.7 0.1 5.1 3 1 2 5 5 5 0 Ultra-violet resistance protein B UPF0242 PF06785.11 gi|352681570|ref|YP_004892094.1| - 0.035 14.2 11.8 0.15 12.1 2.5 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Fez1 PF06818.15 gi|352681570|ref|YP_004892094.1| - 0.036 14.5 11.3 0.18 12.3 11.3 2.0 1 1 0 1 1 1 0 Fez1 Filament PF00038.21 gi|352681570|ref|YP_004892094.1| - 0.036 13.7 14.1 0.42 10.1 4.1 2.2 1 1 1 2 2 2 0 Intermediate filament protein ZapA PF05164.13 gi|352681570|ref|YP_004892094.1| - 0.038 14.4 11.8 65 4.1 11.8 3.0 1 1 0 1 1 1 0 Cell division protein ZapA Syntaxin_2 PF14523.6 gi|352681570|ref|YP_004892094.1| - 0.039 14.3 15.9 0.046 14.1 3.1 2.7 2 1 1 3 3 2 0 Syntaxin-like protein CorA PF01544.18 gi|352681570|ref|YP_004892094.1| - 0.04 13.2 15.9 2 7.7 7.5 2.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Sec16_C PF12931.7 gi|352681570|ref|YP_004892094.1| - 0.041 13.6 1.0 2.6 7.6 0.1 2.3 1 1 0 2 2 2 0 Sec23-binding domain of Sec16 Acyl-CoA_dh_2 PF08028.11 gi|352681570|ref|YP_004892094.1| - 0.05 13.9 8.5 0.12 12.6 0.8 2.6 1 1 0 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain Bacillus_HBL PF05791.11 gi|352681570|ref|YP_004892094.1| - 0.053 13.3 9.8 0.078 12.8 2.0 2.2 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) T7SS_ESX_EspC PF10824.8 gi|352681570|ref|YP_004892094.1| - 0.055 14.0 1.9 1 9.9 0.3 2.6 1 1 1 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm Taxilin PF09728.9 gi|352681570|ref|YP_004892094.1| - 0.056 12.6 8.7 0.071 12.3 8.7 1.3 1 0 0 1 1 1 0 Myosin-like coiled-coil protein APG6_N PF17675.1 gi|352681570|ref|YP_004892094.1| - 0.062 13.8 12.3 0.2 12.2 3.5 2.4 1 1 1 2 2 2 0 Apg6 coiled-coil region SF-assemblin PF06705.11 gi|352681570|ref|YP_004892094.1| - 0.067 12.5 17.8 0.13 11.6 17.0 1.7 1 1 0 1 1 1 0 SF-assemblin/beta giardin Occludin_ELL PF07303.13 gi|352681570|ref|YP_004892094.1| - 0.074 13.8 5.3 37 5.1 5.3 3.1 1 1 0 1 1 1 0 Occludin homology domain FUSC PF04632.12 gi|352681570|ref|YP_004892094.1| - 0.074 11.6 5.5 0.16 10.5 5.4 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein family Rad50_zn_hook PF04423.14 gi|352681570|ref|YP_004892094.1| - 0.075 12.9 6.0 54 3.7 0.1 5.7 4 3 2 6 6 5 0 Rad50 zinc hook motif Nup88 PF10168.9 gi|352681570|ref|YP_004892094.1| - 0.077 10.8 11.3 0.095 10.5 11.3 1.1 1 0 0 1 1 1 0 Nuclear pore component LMBR1 PF04791.16 gi|352681570|ref|YP_004892094.1| - 0.078 11.9 4.8 0.096 11.6 4.8 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF2205 PF10224.9 gi|352681570|ref|YP_004892094.1| - 0.081 12.9 16.0 3.8 7.6 0.4 4.9 1 1 3 4 4 4 0 Short coiled-coil protein LemA PF04011.12 gi|352681570|ref|YP_004892094.1| - 0.082 12.8 4.8 1.1 9.1 0.3 2.9 1 1 1 3 3 3 0 LemA family FmiP_Thoc5 PF09766.9 gi|352681570|ref|YP_004892094.1| - 0.082 12.2 8.5 0.28 10.4 1.9 2.4 1 1 2 3 3 3 0 Fms-interacting protein/Thoc5 ACCA PF03255.14 gi|352681570|ref|YP_004892094.1| - 0.083 12.8 10.4 2.3 8.1 4.3 2.9 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HSCB_C PF07743.13 gi|352681570|ref|YP_004892094.1| - 0.086 13.3 15.8 1.2e+04 -3.1 15.8 4.0 1 1 0 1 1 0 0 HSCB C-terminal oligomerisation domain DUF2730 PF10805.8 gi|352681570|ref|YP_004892094.1| - 0.086 12.9 12.4 7.6 6.7 3.7 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) MtrB PF05440.12 gi|352681570|ref|YP_004892094.1| - 0.09 13.2 5.2 5.8 7.4 0.0 3.9 1 1 4 5 5 5 0 Tetrahydromethanopterin S-methyltransferase subunit B Rootletin PF15035.6 gi|352681570|ref|YP_004892094.1| - 0.095 12.7 8.3 0.24 11.4 8.4 1.7 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Rho_Binding PF08912.11 gi|352681570|ref|YP_004892094.1| - 0.11 13.3 10.4 14 6.6 0.2 3.9 2 1 2 4 4 3 0 Rho Binding AIP3 PF03915.13 gi|352681570|ref|YP_004892094.1| - 0.12 11.4 14.8 0.27 10.3 14.6 1.5 1 1 0 1 1 1 0 Actin interacting protein 3 GldM_N PF12081.8 gi|352681570|ref|YP_004892094.1| - 0.12 12.4 6.7 0.6 10.2 6.6 1.9 1 1 0 1 1 1 0 GldM N-terminal domain YkyA PF10368.9 gi|352681570|ref|YP_004892094.1| - 0.13 12.0 10.3 0.55 9.9 10.3 2.0 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF4988 PF16378.5 gi|352681570|ref|YP_004892094.1| - 0.13 11.9 16.4 3.2 7.4 1.6 4.2 2 1 2 4 4 4 0 Domain of unknown function BshC PF10079.9 gi|352681570|ref|YP_004892094.1| - 0.13 11.0 9.2 0.37 9.5 1.7 2.0 1 1 1 2 2 2 0 Bacillithiol biosynthesis BshC FemAB PF02388.16 gi|352681570|ref|YP_004892094.1| - 0.13 11.1 9.3 0.19 10.6 2.1 2.1 1 1 1 2 2 2 0 FemAB family DUF1843 PF08898.10 gi|352681570|ref|YP_004892094.1| - 0.13 12.8 0.7 0.52 10.9 0.1 2.4 2 0 0 2 2 1 0 Domain of unknown function (DUF1843) LidA_Long_CC PF18641.1 gi|352681570|ref|YP_004892094.1| - 0.13 12.3 12.0 0.44 10.6 1.7 3.0 1 1 0 2 2 2 0 LidA long coiled-coil domain T2SSF PF00482.23 gi|352681570|ref|YP_004892094.1| - 0.14 12.1 5.9 0.18 11.7 1.1 2.6 1 1 2 3 3 3 0 Type II secretion system (T2SS), protein F Syntaxin-6_N PF09177.11 gi|352681570|ref|YP_004892094.1| - 0.14 12.7 13.6 14 6.3 3.7 2.9 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF5082 PF16888.5 gi|352681570|ref|YP_004892094.1| - 0.14 12.4 13.7 3.5 7.9 13.7 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) Erp_C PF06780.11 gi|352681570|ref|YP_004892094.1| - 0.15 12.1 13.5 0.74 9.8 0.5 4.4 1 1 3 4 4 4 0 Erp protein C-terminus ApoO PF09769.9 gi|352681570|ref|YP_004892094.1| - 0.15 12.0 1.1 2.1 8.3 0.1 2.2 1 1 1 2 2 2 0 Apolipoprotein O STAT_alpha PF01017.20 gi|352681570|ref|YP_004892094.1| - 0.15 11.9 8.4 3 7.7 8.3 2.1 1 1 1 2 2 2 0 STAT protein, all-alpha domain Flagellin_C PF00700.21 gi|352681570|ref|YP_004892094.1| - 0.16 12.4 9.6 9.8 6.6 0.8 3.7 1 1 2 3 3 3 0 Bacterial flagellin C-terminal helical region SlyX PF04102.12 gi|352681570|ref|YP_004892094.1| - 0.16 12.6 17.6 1.4 9.6 0.3 4.4 2 1 2 4 4 3 0 SlyX LUC7 PF03194.15 gi|352681570|ref|YP_004892094.1| - 0.16 11.6 12.5 1.7 8.3 2.0 2.3 1 1 1 2 2 2 0 LUC7 N_terminus DUF4140 PF13600.6 gi|352681570|ref|YP_004892094.1| - 0.16 12.4 18.4 3.8 8.0 0.8 3.8 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) HAUS6_N PF14661.6 gi|352681570|ref|YP_004892094.1| - 0.17 11.5 10.6 26 4.3 10.6 2.2 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Swi5 PF07061.11 gi|352681570|ref|YP_004892094.1| - 0.17 12.0 8.0 30 4.8 0.2 3.8 1 1 1 2 2 2 0 Swi5 Hemagglutinin PF00509.18 gi|352681570|ref|YP_004892094.1| - 0.18 10.2 11.6 0.81 8.0 3.0 2.3 1 1 1 2 2 2 0 Haemagglutinin LTXXQ PF07813.12 gi|352681570|ref|YP_004892094.1| - 0.18 12.6 5.5 4.3 8.1 1.0 3.0 1 1 1 2 2 2 0 LTXXQ motif family protein HAUS-augmin3 PF14932.6 gi|352681570|ref|YP_004892094.1| - 0.18 11.3 6.5 0.6 9.6 2.0 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DLP_helical PF18709.1 gi|352681570|ref|YP_004892094.1| - 0.21 10.8 12.9 1.2 8.2 1.3 2.5 1 1 2 3 3 3 0 Dynamin-like helical domain Fmp27_WPPW PF10359.9 gi|352681570|ref|YP_004892094.1| - 0.21 10.4 12.1 1.4 7.7 2.4 2.2 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Sulfatase_C PF14707.6 gi|352681570|ref|YP_004892094.1| - 0.21 12.3 1.3 15 6.3 0.1 2.8 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase Helo_like_N PF17111.5 gi|352681570|ref|YP_004892094.1| - 0.23 10.8 8.6 48 3.2 8.6 2.6 1 1 0 1 1 1 0 Fungal N-terminal domain of STAND proteins V_ATPase_I PF01496.19 gi|352681570|ref|YP_004892094.1| - 0.26 9.2 8.3 0.56 8.1 2.4 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HIP1_clath_bdg PF16515.5 gi|352681570|ref|YP_004892094.1| - 0.29 11.7 11.3 1.3 9.6 4.2 2.8 1 1 3 4 4 4 0 Clathrin-binding domain of Huntingtin-interacting protein 1 HWE_HK PF07536.14 gi|352681570|ref|YP_004892094.1| - 0.29 11.8 8.9 18 6.1 0.9 3.6 1 1 3 4 4 3 0 HWE histidine kinase Fibritin_C PF07921.12 gi|352681570|ref|YP_004892094.1| - 0.31 11.2 3.4 6.8 6.9 3.7 2.7 1 1 1 2 2 1 0 Fibritin C-terminal region ZapB PF06005.12 gi|352681570|ref|YP_004892094.1| - 0.32 11.5 13.5 58 4.2 10.3 3.7 2 1 0 2 2 1 0 Cell division protein ZapB AKNA PF12443.8 gi|352681570|ref|YP_004892094.1| - 0.33 11.6 1.7 56 4.5 0.1 3.1 1 1 2 3 3 2 0 AT-hook-containing transcription factor Sipho_Gp157 PF05565.11 gi|352681570|ref|YP_004892094.1| - 0.33 10.9 14.9 0.59 10.1 5.7 2.3 1 1 1 2 2 2 0 Siphovirus Gp157 Stathmin PF00836.19 gi|352681570|ref|YP_004892094.1| - 0.37 10.8 7.5 0.59 10.1 5.2 2.2 1 1 2 3 3 3 0 Stathmin family DUF922 PF06037.11 gi|352681570|ref|YP_004892094.1| - 0.4 10.5 6.5 2.1 8.1 0.8 2.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF922) Peptidase_M3 PF01432.20 gi|352681570|ref|YP_004892094.1| - 0.42 9.8 2.5 0.58 9.3 0.7 1.8 1 1 1 2 2 2 0 Peptidase family M3 MobC PF05713.11 gi|352681570|ref|YP_004892094.1| - 0.44 11.1 11.9 22 5.6 0.2 5.6 1 1 7 8 8 8 0 Bacterial mobilisation protein (MobC) DUF1910 PF08928.10 gi|352681570|ref|YP_004892094.1| - 0.46 10.5 3.4 12 5.9 0.5 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) JIP_LZII PF16471.5 gi|352681570|ref|YP_004892094.1| - 0.47 10.7 17.9 2.2 8.5 3.5 4.3 1 1 3 4 4 4 0 JNK-interacting protein leucine zipper II Ead_Ea22 PF13935.6 gi|352681570|ref|YP_004892094.1| - 0.48 11.1 11.6 1.4 9.6 1.5 2.4 1 1 1 2 2 2 0 Ead/Ea22-like protein DUF885 PF05960.11 gi|352681570|ref|YP_004892094.1| - 0.51 9.9 8.5 0.88 9.1 1.3 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF885) KH_5 PF13184.6 gi|352681570|ref|YP_004892094.1| - 0.51 10.5 9.3 6.1 7.0 0.1 3.6 2 1 2 4 4 3 0 NusA-like KH domain Peptidase_M75 PF09375.10 gi|352681570|ref|YP_004892094.1| - 0.51 9.8 9.5 0.62 9.5 1.4 2.5 1 1 1 2 2 2 0 Imelysin FAM76 PF16046.5 gi|352681570|ref|YP_004892094.1| - 0.55 9.5 13.0 0.18 11.1 4.3 2.5 1 1 2 3 3 3 0 FAM76 protein MafB PF06255.13 gi|352681570|ref|YP_004892094.1| - 0.55 9.6 4.9 2.2 7.6 1.0 2.5 1 1 2 3 3 3 0 Neisseria toxin MafB Baculo_F PF12259.8 gi|352681570|ref|YP_004892094.1| - 0.71 8.3 11.1 0.41 9.1 2.0 2.0 1 1 1 2 2 2 0 Baculovirus F protein CCDC-167 PF15188.6 gi|352681570|ref|YP_004892094.1| - 0.75 10.2 16.8 17 5.8 7.7 3.8 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Corona_S2 PF01601.16 gi|352681570|ref|YP_004892094.1| - 0.84 8.1 6.1 2.1 6.7 1.8 2.0 1 1 1 2 2 2 0 Coronavirus S2 glycoprotein Spc24 PF08286.11 gi|352681570|ref|YP_004892094.1| - 0.86 9.9 13.0 3.6e+03 -1.7 13.0 3.4 1 1 0 1 1 0 0 Spc24 subunit of Ndc80 DASH_Dad1 PF08649.10 gi|352681570|ref|YP_004892094.1| - 0.98 9.7 8.0 23 5.3 0.6 3.6 2 2 2 4 4 4 0 DASH complex subunit Dad1 DUF4665 PF15679.5 gi|352681570|ref|YP_004892094.1| - 1 10.1 8.8 16 6.2 0.5 3.1 1 1 3 4 4 3 0 Domain of unknown function (DUF4665) HrpA_pilin PF09589.10 gi|352681570|ref|YP_004892094.1| - 1 10.1 10.1 1.3 9.8 3.6 3.3 1 1 3 4 4 3 0 HrpA pilus formation protein DUF724 PF05266.14 gi|352681570|ref|YP_004892094.1| - 1.1 9.1 10.7 4 7.2 0.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Ssu72 PF04722.13 gi|352681570|ref|YP_004892094.1| - 1.1 8.8 7.6 2 8.0 0.2 2.1 1 1 1 2 2 2 0 Ssu72-like protein DUF3810 PF12725.7 gi|352681570|ref|YP_004892094.1| - 1.2 8.5 3.1 23 4.2 2.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) MRFAP1 PF15155.6 gi|352681570|ref|YP_004892094.1| - 1.2 9.7 10.1 0.25 11.9 1.9 2.7 1 1 1 2 2 2 0 MORF4 family-associated protein1 Enkurin PF13864.6 gi|352681570|ref|YP_004892094.1| - 1.2 9.6 5.4 6.4 7.3 1.7 2.6 1 1 1 2 2 2 0 Calmodulin-binding IDO PF01231.18 gi|352681570|ref|YP_004892094.1| - 1.2 7.8 5.8 4.6 5.9 0.5 2.3 2 1 0 2 2 2 0 Indoleamine 2,3-dioxygenase FAP206 PF12018.8 gi|352681570|ref|YP_004892094.1| - 1.3 8.5 6.2 8.4 5.8 2.1 2.2 1 1 1 2 2 2 0 Domain of unknown function DASH_Spc19 PF08287.11 gi|352681570|ref|YP_004892094.1| - 1.3 8.9 13.8 9.5 6.1 0.4 3.0 1 1 2 3 3 3 0 Spc19 HU-CCDC81_bac_2 PF18175.1 gi|352681570|ref|YP_004892094.1| - 1.4 8.8 5.1 23 5.0 0.1 3.5 2 2 2 4 4 3 0 CCDC81-like prokaryotic HU domain 2 Vps54_N PF10475.9 gi|352681570|ref|YP_004892094.1| - 1.5 8.1 9.0 1.4 8.1 1.3 2.1 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex DUF2935 PF11155.8 gi|352681570|ref|YP_004892094.1| - 1.5 9.2 4.1 44 4.4 4.0 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) YojJ PF10372.9 gi|352681570|ref|YP_004892094.1| - 1.5 8.9 6.7 20 5.4 0.6 3.6 1 1 1 3 3 3 0 Bacterial membrane-spanning protein N-terminus LPP PF04728.13 gi|352681570|ref|YP_004892094.1| - 1.7 9.1 16.8 8.8 6.8 0.9 4.6 1 1 2 3 3 2 0 Lipoprotein leucine-zipper DUF1993 PF09351.10 gi|352681570|ref|YP_004892094.1| - 1.7 8.8 5.8 7.3 6.7 1.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) DUF4549 PF15082.6 gi|352681570|ref|YP_004892094.1| - 1.7 8.4 5.8 32 4.3 0.3 3.3 1 1 3 4 4 3 0 Domain of unknown function (DUF4549) SWI-SNF_Ssr4 PF08549.10 gi|352681570|ref|YP_004892094.1| - 1.8 7.1 7.0 0.32 9.6 1.6 1.8 1 1 0 2 2 2 0 Fungal domain of unknown function (DUF1750) Goodbye PF17109.5 gi|352681570|ref|YP_004892094.1| - 1.8 9.0 7.3 7.7 7.0 1.1 2.6 1 1 1 2 2 2 0 fungal STAND N-terminal Goodbye domain Mobilization_B PF17511.2 gi|352681570|ref|YP_004892094.1| - 1.9 8.8 5.5 9.4 6.6 0.9 2.4 1 1 1 2 2 2 0 Mobilization protein B THOC7 PF05615.13 gi|352681570|ref|YP_004892094.1| - 2.2 8.6 18.3 6.8 7.0 1.6 3.2 2 1 1 3 3 2 0 Tho complex subunit 7 DASH_Duo1 PF08651.10 gi|352681570|ref|YP_004892094.1| - 2.2 8.1 9.8 4 7.3 0.6 3.8 1 1 3 4 4 4 0 DASH complex subunit Duo1 Med9 PF07544.13 gi|352681570|ref|YP_004892094.1| - 2.4 8.3 12.2 5.6 7.1 3.5 2.9 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Noelin-1 PF12308.8 gi|352681570|ref|YP_004892094.1| - 2.8 8.0 11.2 2.6 8.1 1.2 3.1 1 1 2 3 3 3 0 Neurogenesis glycoprotein PRKCSH-like PF12999.7 gi|352681570|ref|YP_004892094.1| - 2.8 7.7 8.0 1.9 8.2 1.5 2.2 1 1 1 2 2 2 0 Glucosidase II beta subunit-like Histidinol_dh PF00815.20 gi|352681570|ref|YP_004892094.1| - 2.8 6.9 8.0 4.6 6.1 6.6 1.9 1 1 1 2 2 2 0 Histidinol dehydrogenase DSX_dimer PF08828.10 gi|352681570|ref|YP_004892094.1| - 2.9 7.6 6.5 12 5.7 0.3 4.0 1 1 3 5 5 2 0 Doublesex dimerisation domain BCAS2 PF05700.11 gi|352681570|ref|YP_004892094.1| - 3 7.5 11.1 3.5 7.3 1.5 3.0 1 1 2 3 3 3 0 Breast carcinoma amplified sequence 2 (BCAS2) ISG65-75 PF11727.8 gi|352681570|ref|YP_004892094.1| - 3.7 6.7 10.2 5.2 6.2 1.8 2.1 1 1 1 2 2 2 0 Invariant surface glycoprotein YtxH PF12732.7 gi|352681570|ref|YP_004892094.1| - 3.9 8.1 10.6 2.4e+03 -0.9 10.6 3.2 1 1 0 1 1 0 0 YtxH-like protein BBP1_C PF15272.6 gi|352681570|ref|YP_004892094.1| - 4.1 7.2 14.2 7.2 6.4 3.5 2.3 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal DUF1479 PF07350.12 gi|352681570|ref|YP_004892094.1| - 4.6 5.9 7.7 12 4.6 1.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1479) Mst1_SARAH PF11629.8 gi|352681570|ref|YP_004892094.1| - 4.8 7.4 10.7 10 6.3 0.7 4.3 1 1 2 4 4 4 0 C terminal SARAH domain of Mst1 MctB PF11382.8 gi|352681570|ref|YP_004892094.1| - 4.9 6.8 10.3 5 6.7 0.6 2.9 1 1 1 3 3 3 0 Copper transport outer membrane protein, MctB EF-G-binding_N PF07299.11 gi|352681570|ref|YP_004892094.1| - 5.6 7.6 7.8 2.4 8.7 0.9 3.0 1 1 2 3 3 2 0 Elongation factor G-binding protein, N-terminal BMFP PF04380.13 gi|352681570|ref|YP_004892094.1| - 5.8 7.5 18.0 3.1 8.3 1.8 3.9 4 1 0 4 4 3 0 Membrane fusogenic activity Ntox28 PF15605.6 gi|352681570|ref|YP_004892094.1| - 6.3 7.1 9.7 4.6 7.5 2.8 2.6 1 1 1 3 3 3 0 Bacterial toxin 28 CR6_interact PF10147.9 gi|352681570|ref|YP_004892094.1| - 8.7 6.0 10.4 13 5.4 6.1 2.2 1 1 1 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 DUF2408 PF10303.9 gi|352681570|ref|YP_004892094.1| - 9.4 6.8 10.7 13 6.4 3.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) MTS PF05175.14 gi|352681571|ref|YP_004892095.1| - 9.6e-15 54.5 0.0 3.7e-14 52.6 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|352681571|ref|YP_004892095.1| - 1.6e-12 47.4 0.6 4e-12 46.1 0.5 1.6 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|352681571|ref|YP_004892095.1| - 1.5e-08 35.2 0.0 2.9e-07 31.1 0.0 2.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|352681571|ref|YP_004892095.1| - 5.1e-08 32.8 0.0 7.1e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|352681571|ref|YP_004892095.1| - 5.4e-07 30.2 0.3 7.6e-06 26.5 0.1 2.6 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352681571|ref|YP_004892095.1| - 2.9e-06 28.0 0.0 0.00059 20.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|352681571|ref|YP_004892095.1| - 1.6e-05 24.8 0.0 2.8e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|352681571|ref|YP_004892095.1| - 0.001 18.8 0.0 0.0019 18.0 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|352681571|ref|YP_004892095.1| - 0.0036 16.9 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TRM PF02005.16 gi|352681571|ref|YP_004892095.1| - 0.0071 15.6 0.0 0.0093 15.2 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_23 PF13489.6 gi|352681571|ref|YP_004892095.1| - 0.012 15.5 0.0 0.13 12.1 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|352681571|ref|YP_004892095.1| - 0.045 13.5 0.2 0.08 12.7 0.0 1.4 2 0 0 2 2 2 0 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|352681571|ref|YP_004892095.1| - 0.13 11.8 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_10 PF05971.12 gi|352681571|ref|YP_004892095.1| - 0.2 10.9 0.0 0.3 10.4 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase Methyltransf_8 PF05148.15 gi|352681571|ref|YP_004892095.1| - 0.22 11.3 0.0 10 5.9 0.0 2.1 2 0 0 2 2 2 0 Hypothetical methyltransferase PaREP1 PF05942.11 gi|352681573|ref|YP_004892097.1| - 2.2e-29 101.7 1.4 2.2e-29 101.7 1.4 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF3701 PF12482.8 gi|352681573|ref|YP_004892097.1| - 0.047 13.8 0.5 0.27 11.4 0.1 2.2 2 0 0 2 2 2 0 Phage integrase protein SPOR PF05036.13 gi|352681575|ref|YP_004892099.1| - 0.0012 19.2 0.2 0.0033 17.8 0.2 1.7 1 0 0 1 1 1 1 Sporulation related domain Exonuc_VII_L PF02601.15 gi|352681575|ref|YP_004892099.1| - 0.0015 18.1 2.3 0.0022 17.6 2.3 1.2 1 0 0 1 1 1 1 Exonuclease VII, large subunit SHE3 PF17078.5 gi|352681575|ref|YP_004892099.1| - 0.12 12.0 11.6 0.7 9.6 1.6 2.4 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Mito_fiss_reg PF05308.11 gi|352681575|ref|YP_004892099.1| - 0.67 10.0 3.9 0.94 9.5 3.9 1.3 1 0 0 1 1 1 0 Mitochondrial fission regulator Ctr PF04145.15 gi|352681575|ref|YP_004892099.1| - 1.4 9.5 3.1 2.7 8.6 2.6 1.7 1 1 0 1 1 1 0 Ctr copper transporter family PaREP1 PF05942.11 gi|352681579|ref|YP_004892103.1| - 9.3e-31 106.1 6.1 1.2e-30 105.8 6.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|352681579|ref|YP_004892103.1| - 0.013 15.6 1.7 0.04 14.0 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF357) Lyase_8_N PF08124.11 gi|352681579|ref|YP_004892103.1| - 0.028 13.4 0.0 0.035 13.0 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain PTS_IIA PF02255.16 gi|352681579|ref|YP_004892103.1| - 0.066 13.3 0.2 0.066 13.3 0.2 2.1 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit Erythro_esteras PF05139.14 gi|352681579|ref|YP_004892103.1| - 0.077 12.8 2.8 0.09 12.6 2.8 1.1 1 0 0 1 1 1 0 Erythromycin esterase ATPase_2 PF01637.18 gi|352681581|ref|YP_004892105.1| - 6.3e-08 32.8 0.0 0.0011 19.0 0.0 2.3 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|352681581|ref|YP_004892105.1| - 6.5e-07 29.4 0.0 1.3e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352681581|ref|YP_004892105.1| - 3.5e-05 24.2 7.8 0.0034 17.8 0.2 3.6 2 2 1 3 3 3 2 AAA ATPase domain DUF234 PF03008.14 gi|352681581|ref|YP_004892105.1| - 7.2e-05 23.2 0.0 0.00013 22.3 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.6 gi|352681581|ref|YP_004892105.1| - 0.003 17.8 0.0 0.0071 16.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF1266 PF06889.11 gi|352681581|ref|YP_004892105.1| - 0.027 14.5 1.9 0.4 10.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1266) TK PF00265.18 gi|352681583|ref|YP_004892107.1| - 1.3e-45 155.4 0.0 1.5e-45 155.2 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 gi|352681583|ref|YP_004892107.1| - 0.0093 16.0 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352681583|ref|YP_004892107.1| - 0.053 13.8 0.0 0.14 12.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain Aldo_ket_red PF00248.21 gi|352681584|ref|YP_004892108.1| - 9.5e-29 100.5 0.0 3e-28 98.9 0.0 1.6 1 1 0 1 1 1 1 Aldo/keto reductase family CTP_transf_like PF01467.26 gi|352681585|ref|YP_004892109.1| - 9.1e-13 48.6 0.0 5.2e-12 46.2 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase-like Glyco_trans_4_4 PF13579.6 gi|352681585|ref|YP_004892109.1| - 0.002 18.6 0.1 0.0029 18.0 0.1 1.4 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain ATP-sulfurylase PF01747.17 gi|352681585|ref|YP_004892109.1| - 0.088 12.3 0.0 1.2 8.5 0.0 2.0 2 0 0 2 2 2 0 ATP-sulfurylase NUDIX PF00293.28 gi|352681586|ref|YP_004892110.1| - 0.025 14.6 0.1 0.084 12.9 0.0 2.0 2 0 0 2 2 2 0 NUDIX domain Gag_p10 PF02337.17 gi|352681586|ref|YP_004892110.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Retroviral GAG p10 protein 4HBT PF03061.22 gi|352681587|ref|YP_004892111.1| - 8.2e-18 64.5 1.3 1.2e-17 64.0 1.3 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|352681587|ref|YP_004892111.1| - 0.00016 22.0 0.3 0.00023 21.5 0.3 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily Rhomboid PF01694.22 gi|352681588|ref|YP_004892112.1| - 6.8e-17 61.9 7.6 6.8e-17 61.9 7.6 1.7 2 0 0 2 2 2 1 Rhomboid family Plasmid_stab_B PF10784.9 gi|352681588|ref|YP_004892112.1| - 0.046 13.6 0.4 0.11 12.4 0.4 1.6 1 0 0 1 1 1 0 Plasmid stability protein DUF4634 PF15465.6 gi|352681588|ref|YP_004892112.1| - 0.057 13.7 0.0 0.082 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4634) Thermopsin PF05317.11 gi|352681589|ref|YP_004892113.1| - 1.7e-79 267.0 21.3 2e-79 266.8 21.3 1.0 1 0 0 1 1 1 1 Thermopsin TM_helix PF05552.12 gi|352681590|ref|YP_004892114.1| - 7.5e-07 29.0 10.1 6.5e-06 26.0 3.3 4.2 6 0 0 6 6 6 2 Conserved TM helix Doppel PF11466.8 gi|352681590|ref|YP_004892114.1| - 1.1 8.9 6.3 0.19 11.4 1.5 2.1 2 0 0 2 2 2 0 Prion-like protein Doppel G_glu_transpept PF01019.21 gi|352681591|ref|YP_004892115.1| - 1.5e-55 189.0 0.0 3.4e-54 184.5 0.0 2.2 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase PALP PF00291.25 gi|352681592|ref|YP_004892116.1| - 2.8e-58 197.6 0.3 3.3e-58 197.4 0.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Mu-like_Com PF10122.9 gi|352681592|ref|YP_004892116.1| - 0.026 14.0 1.7 2.6 7.5 0.1 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com HypA PF01155.19 gi|352681592|ref|YP_004892116.1| - 0.028 14.4 0.6 0.06 13.4 0.6 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|352681592|ref|YP_004892116.1| - 0.15 11.8 3.9 0.27 11.0 3.9 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DFP PF04127.15 gi|352681592|ref|YP_004892116.1| - 0.2 11.5 0.5 0.32 10.8 0.5 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein zinc_ribbon_4 PF13717.6 gi|352681592|ref|YP_004892116.1| - 0.45 10.5 4.7 5.7 6.9 0.1 2.5 1 1 1 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|352681592|ref|YP_004892116.1| - 1.4 8.6 5.5 3.1 7.5 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|352681592|ref|YP_004892116.1| - 3.6 7.5 6.6 4 7.4 0.3 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_RNApol_7kD PF03604.13 gi|352681592|ref|YP_004892116.1| - 5.1 6.9 6.8 12 5.7 6.8 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0047 PF01894.17 gi|352681593|ref|YP_004892117.1| - 5.2e-34 116.8 0.0 6.3e-34 116.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Glyco_hydro_12 PF01670.16 gi|352681594|ref|YP_004892118.1| - 3.1e-17 63.3 0.0 4.8e-17 62.7 0.0 1.2 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 PaREP1 PF05942.11 gi|352681597|ref|YP_004892121.1| - 1.5e-33 115.1 6.4 1.5e-33 115.1 6.4 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|352681597|ref|YP_004892121.1| - 0.00057 20.0 2.9 0.0035 17.4 2.9 2.1 1 1 0 1 1 1 1 HEPN domain DUF357 PF04010.13 gi|352681597|ref|YP_004892121.1| - 0.019 15.0 0.2 0.042 13.9 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF357) FliS PF02561.14 gi|352681597|ref|YP_004892121.1| - 0.069 13.4 0.1 0.11 12.8 0.1 1.3 1 0 0 1 1 1 0 Flagellar protein FliS TPR_2 PF07719.17 gi|352681597|ref|YP_004892121.1| - 0.27 11.5 5.9 1.8 8.9 0.4 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|352681597|ref|YP_004892121.1| - 0.58 9.9 3.2 1.3 8.8 0.5 2.2 2 0 0 2 2 2 0 TPR repeat McrBC PF10117.9 gi|352681598|ref|YP_004892122.1| - 0.00043 19.5 0.0 0.0043 16.2 0.0 2.1 2 0 0 2 2 2 1 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.14 gi|352681599|ref|YP_004892123.1| - 5.2e-16 58.9 0.0 8.9e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|352681599|ref|YP_004892123.1| - 0.0027 17.3 0.0 0.0096 15.5 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|352681599|ref|YP_004892123.1| - 0.0081 16.6 0.4 0.034 14.5 0.4 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_7 PF12775.7 gi|352681599|ref|YP_004892123.1| - 0.031 13.8 0.0 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|352681599|ref|YP_004892123.1| - 0.099 12.4 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|352681599|ref|YP_004892123.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|352681599|ref|YP_004892123.1| - 0.17 12.3 0.1 0.32 11.4 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|352681599|ref|YP_004892123.1| - 0.2 11.5 0.1 28 4.6 0.0 2.5 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|352681599|ref|YP_004892123.1| - 0.21 12.1 0.0 2.8 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|352681601|ref|YP_004892125.1| - 3.7e-12 46.7 0.1 6.7e-06 26.1 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|352681601|ref|YP_004892125.1| - 1.4e-11 44.8 0.0 2.2e-05 24.4 0.0 2.4 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|352681601|ref|YP_004892125.1| - 0.00018 21.0 0.0 0.00031 20.3 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352681601|ref|YP_004892125.1| - 0.00027 20.6 0.0 0.00051 19.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.8 gi|352681601|ref|YP_004892125.1| - 0.0082 15.4 0.0 0.051 12.8 0.0 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|352681601|ref|YP_004892125.1| - 0.23 12.0 0.0 0.36 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2250 PF10007.9 gi|352681602|ref|YP_004892126.1| - 1.7e-23 82.5 1.8 2e-23 82.3 1.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|352681602|ref|YP_004892126.1| - 0.00011 21.9 0.1 0.00015 21.6 0.1 1.3 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|352681602|ref|YP_004892126.1| - 0.0015 18.4 0.1 0.0024 17.7 0.1 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|352681602|ref|YP_004892126.1| - 0.0035 17.6 0.1 0.0063 16.8 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator Replic_Relax PF13814.6 gi|352681602|ref|YP_004892126.1| - 0.0067 16.5 1.8 0.028 14.5 1.8 1.8 1 1 0 1 1 1 1 Replication-relaxation DprA_WH PF17782.1 gi|352681602|ref|YP_004892126.1| - 0.0097 16.0 0.6 0.014 15.5 0.6 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_24 PF13412.6 gi|352681602|ref|YP_004892126.1| - 0.012 15.2 0.1 0.022 14.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|352681602|ref|YP_004892126.1| - 0.012 15.4 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PadR PF03551.14 gi|352681602|ref|YP_004892126.1| - 0.025 14.5 3.3 1.2 9.2 3.3 2.2 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|352681602|ref|YP_004892126.1| - 0.029 14.9 0.2 0.072 13.6 0.2 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain Cdc6_C PF09079.11 gi|352681602|ref|YP_004892126.1| - 0.048 13.7 0.3 0.065 13.2 0.1 1.4 1 1 0 1 1 1 0 CDC6, C terminal winged helix domain BLACT_WH PF17778.1 gi|352681602|ref|YP_004892126.1| - 0.066 13.2 0.4 0.11 12.5 0.4 1.3 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain HTH_45 PF14947.6 gi|352681602|ref|YP_004892126.1| - 0.07 13.1 0.0 0.4 10.7 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn-helix AAA_21 PF13304.6 gi|352681603|ref|YP_004892127.1| - 7.6e-23 81.8 0.0 8.7e-12 45.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|352681603|ref|YP_004892127.1| - 2.8e-12 47.0 0.0 2.8e-10 40.5 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|352681603|ref|YP_004892127.1| - 5.4e-12 46.6 0.0 8.1e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|352681603|ref|YP_004892127.1| - 3.2e-11 43.1 0.0 5.5e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352681603|ref|YP_004892127.1| - 0.0017 18.1 0.0 0.0033 17.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.8 gi|352681603|ref|YP_004892127.1| - 0.0022 17.3 0.0 1.1 8.4 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_22 PF13401.6 gi|352681603|ref|YP_004892127.1| - 0.0026 18.0 0.0 0.69 10.2 0.1 2.3 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|352681603|ref|YP_004892127.1| - 0.0054 17.3 0.0 0.074 13.6 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_27 PF13514.6 gi|352681603|ref|YP_004892127.1| - 0.0099 15.5 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|352681603|ref|YP_004892127.1| - 0.084 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_PrkA PF08298.11 gi|352681603|ref|YP_004892127.1| - 0.1 11.5 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain Nop53 PF07767.11 gi|352681604|ref|YP_004892128.1| - 0.17 11.2 0.0 0.22 10.9 0.0 1.1 1 0 0 1 1 1 0 Nop53 (60S ribosomal biogenesis) PDDEXK_10 PF07788.11 gi|352681606|ref|YP_004892130.1| - 3.7e-33 113.3 1.6 1.3e-32 111.6 1.6 2.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|352681606|ref|YP_004892130.1| - 4.2e-27 94.1 1.5 4.2e-27 94.1 1.5 3.8 1 1 2 3 3 3 1 Protein of unknown function (DUF3782) ScsC_N PF18312.1 gi|352681606|ref|YP_004892130.1| - 0.00015 21.5 4.8 0.0041 16.9 1.6 3.3 3 0 0 3 3 3 1 Copper resistance protein ScsC N-terminal domain DUF2730 PF10805.8 gi|352681606|ref|YP_004892130.1| - 0.009 16.1 16.6 1.1 9.4 3.8 3.5 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) GPHR_N PF12537.8 gi|352681606|ref|YP_004892130.1| - 0.051 13.7 4.0 5.8 7.1 0.1 2.9 3 0 0 3 3 3 0 The Golgi pH Regulator (GPHR) Family N-terminal EMP24_GP25L PF01105.24 gi|352681606|ref|YP_004892130.1| - 0.057 13.4 0.4 0.057 13.4 0.4 2.7 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD NPV_P10 PF05531.12 gi|352681606|ref|YP_004892130.1| - 0.093 13.2 2.0 23 5.5 1.1 3.3 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein Glyco_transf_15 PF01793.16 gi|352681606|ref|YP_004892130.1| - 0.1 11.9 0.0 0.31 10.3 0.0 1.7 2 0 0 2 2 2 0 Glycolipid 2-alpha-mannosyltransferase TusA PF01206.17 gi|352681606|ref|YP_004892130.1| - 0.15 11.9 3.3 1.7 8.5 0.5 3.5 3 1 0 3 3 3 0 Sulfurtransferase TusA Vac_Fusion PF02346.16 gi|352681606|ref|YP_004892130.1| - 0.18 11.5 7.8 1.4 8.6 0.4 3.3 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 YojJ PF10372.9 gi|352681606|ref|YP_004892130.1| - 0.19 11.9 2.7 11 6.3 0.5 3.5 3 0 0 3 3 3 0 Bacterial membrane-spanning protein N-terminus DUF2286 PF10051.9 gi|352681606|ref|YP_004892130.1| - 0.25 11.1 0.0 0.25 11.1 0.0 2.5 3 0 0 3 3 2 0 Uncharacterized protein conserved in archaea (DUF2286) DUF1664 PF07889.12 gi|352681606|ref|YP_004892130.1| - 0.25 11.4 10.1 1.3 9.1 2.4 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) FlxA PF14282.6 gi|352681606|ref|YP_004892130.1| - 0.3 11.1 1.6 3 7.9 0.1 2.7 2 1 1 3 3 3 0 FlxA-like protein Peptidase_M19 PF01244.21 gi|352681606|ref|YP_004892130.1| - 0.36 10.0 1.7 0.54 9.4 1.1 1.6 1 1 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) EFhand_Ca_insen PF08726.10 gi|352681606|ref|YP_004892130.1| - 0.4 10.8 6.4 6.2 7.0 0.3 3.8 1 1 2 3 3 3 0 Ca2+ insensitive EF hand PRP9_N PF16958.5 gi|352681606|ref|YP_004892130.1| - 0.4 10.7 8.1 0.25 11.4 5.7 1.7 1 1 1 2 2 2 0 Pre-mRNA-splicing factor PRP9 N-terminus Syntaxin_2 PF14523.6 gi|352681606|ref|YP_004892130.1| - 0.99 9.8 6.9 6.4 7.2 3.9 2.9 1 1 1 2 2 2 0 Syntaxin-like protein RNaseH_C PF09293.10 gi|352681606|ref|YP_004892130.1| - 1.7 9.0 4.8 3.8 7.9 0.3 2.8 1 1 2 3 3 3 0 T4 RNase H, C terminal DUF3818 PF12825.7 gi|352681606|ref|YP_004892130.1| - 3.4 6.6 8.9 5 6.0 8.9 1.2 1 0 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) MtrG PF04210.13 gi|352681606|ref|YP_004892130.1| - 3.7 7.5 5.8 16 5.4 0.2 3.1 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G E2F_CC-MB PF16421.5 gi|352681606|ref|YP_004892130.1| - 4 7.9 8.0 2.4 8.5 2.3 2.5 1 1 1 2 2 2 0 E2F transcription factor CC-MB domain DUF4363 PF14276.6 gi|352681606|ref|YP_004892130.1| - 9.9 6.3 9.2 47 4.2 5.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4363) MFS_1 PF07690.16 gi|352681607|ref|YP_004892131.1| - 1.1e-17 64.0 50.4 1e-13 50.9 18.5 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|352681607|ref|YP_004892131.1| - 3.9e-06 26.0 0.0 1e-05 24.6 0.0 1.7 1 1 0 1 1 1 1 MFS_1 like family Folate_carrier PF01770.18 gi|352681607|ref|YP_004892131.1| - 3.2 6.4 9.8 0.14 10.8 2.3 2.1 2 0 0 2 2 2 0 Reduced folate carrier COMP PF11598.8 gi|352681609|ref|YP_004892133.1| - 0.013 15.9 0.3 0.025 15.0 0.3 1.4 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein GerA PF03323.13 gi|352681609|ref|YP_004892133.1| - 0.57 8.6 9.6 0.77 8.2 9.6 1.1 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein ABC2_membrane PF01061.24 gi|352681610|ref|YP_004892134.1| - 2.9e-07 30.1 22.0 1.1e-06 28.2 22.0 1.8 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|352681610|ref|YP_004892134.1| - 0.0065 15.6 16.2 0.0088 15.2 16.2 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|352681611|ref|YP_004892135.1| - 4.2e-27 95.3 0.0 6.4e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681611|ref|YP_004892135.1| - 1.7e-16 60.9 0.0 3.6e-11 43.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681611|ref|YP_004892135.1| - 1.2e-05 24.9 0.0 0.024 14.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|352681611|ref|YP_004892135.1| - 0.0003 21.2 0.1 0.00056 20.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|352681611|ref|YP_004892135.1| - 0.002 17.9 0.6 0.0079 15.9 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|352681611|ref|YP_004892135.1| - 0.0056 17.2 0.0 0.0087 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|352681611|ref|YP_004892135.1| - 0.008 15.4 0.0 0.39 9.9 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain TsaE PF02367.17 gi|352681611|ref|YP_004892135.1| - 0.011 15.7 0.1 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 gi|352681611|ref|YP_004892135.1| - 0.013 15.3 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|352681611|ref|YP_004892135.1| - 0.014 15.8 0.0 0.038 14.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|352681611|ref|YP_004892135.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|352681611|ref|YP_004892135.1| - 0.018 14.6 0.0 0.14 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|352681611|ref|YP_004892135.1| - 0.019 14.7 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|352681611|ref|YP_004892135.1| - 0.019 14.9 0.0 0.065 13.2 0.0 1.8 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|352681611|ref|YP_004892135.1| - 0.038 13.7 0.1 1.8 8.2 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein MukB PF04310.12 gi|352681611|ref|YP_004892135.1| - 0.047 13.5 0.0 0.071 12.9 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal cobW PF02492.19 gi|352681611|ref|YP_004892135.1| - 0.056 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|352681611|ref|YP_004892135.1| - 0.065 13.5 0.1 0.2 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|352681611|ref|YP_004892135.1| - 0.069 13.4 0.0 0.36 11.1 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MutS_V PF00488.21 gi|352681611|ref|YP_004892135.1| - 0.074 13.1 0.1 12 5.8 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_14 PF13173.6 gi|352681611|ref|YP_004892135.1| - 0.074 13.1 0.0 0.22 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|352681611|ref|YP_004892135.1| - 0.077 10.5 0.2 0.1 10.1 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_33 PF13671.6 gi|352681611|ref|YP_004892135.1| - 0.11 12.7 0.7 0.25 11.5 0.1 1.9 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|352681611|ref|YP_004892135.1| - 0.14 12.1 0.2 0.44 10.4 0.0 1.8 2 0 0 2 2 2 0 NTPase ATPase_2 PF01637.18 gi|352681611|ref|YP_004892135.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATP-synt_ab PF00006.25 gi|352681611|ref|YP_004892135.1| - 0.18 11.5 0.2 0.25 11.0 0.2 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain KDGP_aldolase PF07071.11 gi|352681611|ref|YP_004892135.1| - 0.18 11.6 0.0 0.38 10.5 0.0 1.6 2 0 0 2 2 1 0 KDGP aldolase DUF169 PF02596.15 gi|352681612|ref|YP_004892136.1| - 7.7e-34 117.4 0.0 8.9e-34 117.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ArCR, COG2043 AA_permease_2 PF13520.6 gi|352681614|ref|YP_004892138.1| - 3.3e-12 46.0 29.3 6.8e-12 44.9 29.2 1.5 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|352681614|ref|YP_004892138.1| - 6.2e-06 25.1 32.2 0.00021 20.0 31.3 3.7 1 1 1 2 2 2 1 Amino acid permease Pyrophosphatase PF00719.19 gi|352681615|ref|YP_004892139.1| - 7.3e-53 178.6 0.0 8.3e-53 178.5 0.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase ABC_tran PF00005.27 gi|352681616|ref|YP_004892140.1| - 3.5e-26 92.4 0.0 4.3e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681616|ref|YP_004892140.1| - 1.4e-07 31.7 0.2 0.0035 17.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681616|ref|YP_004892140.1| - 2.6e-05 23.8 0.1 0.16 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|352681616|ref|YP_004892140.1| - 0.00076 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352681616|ref|YP_004892140.1| - 0.0045 17.4 0.3 0.013 15.9 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|352681616|ref|YP_004892140.1| - 0.0053 17.3 0.1 0.008 16.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352681616|ref|YP_004892140.1| - 0.011 15.5 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|352681616|ref|YP_004892140.1| - 0.019 15.2 0.2 0.22 11.8 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.6 gi|352681616|ref|YP_004892140.1| - 0.021 15.2 0.1 0.038 14.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|352681616|ref|YP_004892140.1| - 0.023 14.9 1.1 0.12 12.7 1.1 2.2 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|352681616|ref|YP_004892140.1| - 0.025 15.0 0.2 0.058 13.8 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|352681616|ref|YP_004892140.1| - 0.032 13.9 0.4 0.045 13.4 0.4 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|352681616|ref|YP_004892140.1| - 0.063 12.8 0.3 0.08 12.5 0.3 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|352681616|ref|YP_004892140.1| - 0.073 13.0 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|352681616|ref|YP_004892140.1| - 0.078 13.0 0.1 0.13 12.3 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_27 PF13514.6 gi|352681616|ref|YP_004892140.1| - 0.082 12.5 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|352681616|ref|YP_004892140.1| - 0.099 11.9 0.1 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 gi|352681616|ref|YP_004892140.1| - 0.14 11.6 0.1 0.38 10.1 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|352681616|ref|YP_004892140.1| - 0.14 11.8 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|352681616|ref|YP_004892140.1| - 0.15 12.2 0.1 0.31 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|352681616|ref|YP_004892140.1| - 0.15 9.6 0.3 0.21 9.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_24 PF13479.6 gi|352681616|ref|YP_004892140.1| - 0.21 11.3 0.2 0.33 10.6 0.2 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|352681617|ref|YP_004892141.1| - 1.1e-28 100.5 0.0 1.4e-28 100.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681617|ref|YP_004892141.1| - 2.8e-10 40.5 0.8 1.8e-05 24.7 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681617|ref|YP_004892141.1| - 5.1e-07 29.4 0.4 0.0019 17.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|352681617|ref|YP_004892141.1| - 9.6e-06 26.2 0.0 1.6e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352681617|ref|YP_004892141.1| - 3e-05 23.7 0.0 5.4e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|352681617|ref|YP_004892141.1| - 0.00057 19.7 0.0 0.0006 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|352681617|ref|YP_004892141.1| - 0.00076 19.5 0.0 0.0017 18.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|352681617|ref|YP_004892141.1| - 0.0027 18.1 0.1 0.0039 17.6 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|352681617|ref|YP_004892141.1| - 0.0035 16.4 0.0 0.0095 15.0 0.0 1.6 2 0 0 2 2 2 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|352681617|ref|YP_004892141.1| - 0.0046 16.9 0.0 0.0091 15.9 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|352681617|ref|YP_004892141.1| - 0.0063 16.3 0.1 0.012 15.3 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352681617|ref|YP_004892141.1| - 0.0092 16.3 0.1 0.018 15.4 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|352681617|ref|YP_004892141.1| - 0.0093 16.1 0.0 0.018 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|352681617|ref|YP_004892141.1| - 0.013 14.8 0.1 4.7 6.4 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA PF00004.29 gi|352681617|ref|YP_004892141.1| - 0.019 15.4 0.2 0.49 10.8 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Dynamin_N PF00350.23 gi|352681617|ref|YP_004892141.1| - 0.021 14.9 0.1 0.032 14.3 0.1 1.5 1 1 0 1 1 1 0 Dynamin family cobW PF02492.19 gi|352681617|ref|YP_004892141.1| - 0.023 14.3 0.1 0.043 13.4 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|352681617|ref|YP_004892141.1| - 0.026 14.3 0.1 0.072 12.9 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|352681617|ref|YP_004892141.1| - 0.028 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|352681617|ref|YP_004892141.1| - 0.029 14.6 0.1 0.07 13.4 0.1 1.7 2 0 0 2 2 1 0 AAA domain FeoB_N PF02421.18 gi|352681617|ref|YP_004892141.1| - 0.047 13.2 0.1 0.12 11.9 0.1 1.6 2 0 0 2 2 2 0 Ferrous iron transport protein B AAA_24 PF13479.6 gi|352681617|ref|YP_004892141.1| - 0.048 13.4 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|352681617|ref|YP_004892141.1| - 0.05 12.4 1.0 0.43 9.3 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class NACHT PF05729.12 gi|352681617|ref|YP_004892141.1| - 0.062 13.2 0.1 0.17 11.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain IstB_IS21 PF01695.17 gi|352681617|ref|YP_004892141.1| - 0.063 13.0 0.1 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|352681617|ref|YP_004892141.1| - 0.066 13.8 1.1 0.6 10.7 0.2 2.2 1 1 1 2 2 2 0 AAA domain MobB PF03205.14 gi|352681617|ref|YP_004892141.1| - 0.068 13.1 0.2 0.16 11.9 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_27 PF13514.6 gi|352681617|ref|YP_004892141.1| - 0.15 11.7 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|352681617|ref|YP_004892141.1| - 0.15 12.0 0.0 0.32 10.9 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|352681617|ref|YP_004892141.1| - 0.2 11.1 0.0 0.35 10.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_2 PF02653.16 gi|352681618|ref|YP_004892142.1| - 1.2e-14 54.2 36.5 1.2e-14 54.2 36.5 1.4 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|352681619|ref|YP_004892143.1| - 1.9e-24 86.3 46.3 2.3e-24 86.0 46.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PsbM PF05151.12 gi|352681619|ref|YP_004892143.1| - 8.7 6.2 12.8 0.17 11.8 1.2 3.8 3 0 0 3 3 3 0 Photosystem II reaction centre M protein (PsbM) Peripla_BP_6 PF13458.6 gi|352681620|ref|YP_004892144.1| - 9.5e-52 176.7 1.0 1.3e-51 176.3 1.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|352681620|ref|YP_004892144.1| - 4.6e-24 85.1 0.0 6.9e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain DUF3439 PF11921.8 gi|352681620|ref|YP_004892144.1| - 0.78 9.7 3.8 1.5 8.8 3.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) DrsE PF02635.15 gi|352681621|ref|YP_004892145.1| - 0.024 15.0 0.0 0.028 14.8 0.0 1.1 1 0 0 1 1 1 0 DsrE/DsrF-like family Arc_trans_TRASH PF08394.10 gi|352681622|ref|YP_004892146.1| - 0.002 18.4 4.4 0.0028 17.9 4.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-SNAP50_C PF12251.8 gi|352681622|ref|YP_004892146.1| - 0.017 14.8 1.4 0.019 14.6 1.4 1.0 1 0 0 1 1 1 0 snRNA-activating protein of 50kDa MW C terminal YHS PF04945.13 gi|352681622|ref|YP_004892146.1| - 0.083 13.0 0.5 0.13 12.4 0.5 1.3 1 0 0 1 1 1 0 YHS domain zf-FCS PF06467.14 gi|352681622|ref|YP_004892146.1| - 0.098 12.6 10.2 0.31 11.0 10.2 2.0 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif EamA PF00892.20 gi|352681623|ref|YP_004892147.1| - 1e-34 119.7 31.5 7.1e-20 71.6 11.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family DrsE_2 PF13686.6 gi|352681624|ref|YP_004892148.1| - 4.2e-07 30.0 0.0 6e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|352681624|ref|YP_004892148.1| - 0.022 15.1 0.0 0.041 14.2 0.0 1.5 1 1 0 1 1 1 0 DsrE/DsrF-like family HEM4 PF02602.15 gi|352681625|ref|YP_004892149.1| - 1.8e-15 57.0 3.2 2.7e-15 56.4 3.2 1.4 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD E3_binding PF02817.17 gi|352681625|ref|YP_004892149.1| - 0.3 11.5 2.3 0.56 10.6 0.8 2.3 2 0 0 2 2 2 0 e3 binding domain AhpC-TSA PF00578.21 gi|352681626|ref|YP_004892150.1| - 1.9e-37 127.9 0.0 2.3e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|352681626|ref|YP_004892150.1| - 2.6e-21 75.9 0.0 3e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|352681626|ref|YP_004892150.1| - 0.03 14.5 0.0 0.18 11.9 0.0 1.9 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme Antiterm PF03589.13 gi|352681626|ref|YP_004892150.1| - 0.16 12.3 0.0 14 6.1 0.0 2.2 2 0 0 2 2 2 0 Antitermination protein UPF0175 PF03683.13 gi|352681627|ref|YP_004892151.1| - 0.035 13.8 0.2 0.11 12.2 0.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_30 PF13556.6 gi|352681627|ref|YP_004892151.1| - 0.091 12.6 0.2 0.19 11.6 0.2 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF234 PF03008.14 gi|352681630|ref|YP_004892154.1| - 1.2e-12 48.1 0.0 2.3e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|352681630|ref|YP_004892154.1| - 4.3e-11 43.2 0.0 1.1e-10 41.8 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea MarR_2 PF12802.7 gi|352681630|ref|YP_004892154.1| - 0.0059 16.5 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|352681630|ref|YP_004892154.1| - 0.0081 16.0 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|352681630|ref|YP_004892154.1| - 0.018 14.9 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|352681630|ref|YP_004892154.1| - 0.034 13.9 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|352681630|ref|YP_004892154.1| - 0.036 14.4 0.1 0.075 13.4 0.1 1.5 1 0 0 1 1 1 0 FaeA-like protein HTH_45 PF14947.6 gi|352681630|ref|YP_004892154.1| - 0.075 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|352681630|ref|YP_004892154.1| - 0.13 11.9 0.2 0.88 9.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding ATPase_2 PF01637.18 gi|352681631|ref|YP_004892155.1| - 0.0074 16.2 0.0 0.0076 16.2 0.0 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Dynein_C PF18199.1 gi|352681632|ref|YP_004892156.1| - 0.058 12.6 0.0 0.073 12.3 0.0 1.1 1 0 0 1 1 1 0 Dynein heavy chain C-terminal domain Pyr_redox_2 PF07992.14 gi|352681633|ref|YP_004892157.1| - 1e-53 182.5 4.1 1.3e-53 182.1 4.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|352681633|ref|YP_004892157.1| - 5.9e-29 101.3 7.4 1.3e-21 77.2 0.1 3.0 1 1 2 3 3 3 3 Glucose inhibited division protein A Pyr_redox_dim PF02852.22 gi|352681633|ref|YP_004892157.1| - 8.1e-20 71.1 0.0 2e-19 69.9 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|352681633|ref|YP_004892157.1| - 6e-14 52.0 2.4 5.7e-11 42.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352681633|ref|YP_004892157.1| - 2.3e-12 47.3 5.9 2.5e-10 40.8 1.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|352681633|ref|YP_004892157.1| - 2.7e-09 36.9 1.4 2.5e-08 33.7 0.6 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|352681633|ref|YP_004892157.1| - 4.8e-05 22.6 11.8 0.00032 19.9 3.4 3.0 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|352681633|ref|YP_004892157.1| - 0.0007 18.4 8.0 0.00098 17.9 1.6 3.1 4 0 0 4 4 4 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|352681633|ref|YP_004892157.1| - 0.00099 19.1 0.2 0.00099 19.1 0.2 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|352681633|ref|YP_004892157.1| - 0.012 14.9 1.1 0.012 14.9 1.1 2.2 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF374 PF04028.13 gi|352681633|ref|YP_004892157.1| - 0.035 13.7 1.2 0.27 10.8 0.4 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF374) DAO PF01266.24 gi|352681633|ref|YP_004892157.1| - 0.07 12.7 17.0 0.55 9.8 1.4 3.4 1 1 1 3 3 3 0 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|352681633|ref|YP_004892157.1| - 0.076 12.1 0.0 0.25 10.4 0.0 1.8 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|352681633|ref|YP_004892157.1| - 0.33 9.8 2.6 1.8 7.3 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|352681633|ref|YP_004892157.1| - 0.39 9.7 13.6 0.52 9.3 0.2 3.1 3 1 1 4 4 4 0 Lycopene cyclase protein Acylphosphatase PF00708.18 gi|352681634|ref|YP_004892158.1| - 1.2e-20 73.7 0.0 2.2e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase TusA PF01206.17 gi|352681635|ref|YP_004892159.1| - 4.9e-25 87.1 0.0 5.6e-25 87.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|352681635|ref|YP_004892159.1| - 1.9e-06 27.7 0.2 5.7e-06 26.1 0.2 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.6 gi|352681637|ref|YP_004892161.1| - 2.5e-28 98.9 0.4 1e-15 57.9 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|352681637|ref|YP_004892161.1| - 1e-09 38.8 0.1 3.9e-09 36.9 0.1 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family MtrG PF04210.13 gi|352681637|ref|YP_004892161.1| - 0.025 14.4 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G DrsE PF02635.15 gi|352681638|ref|YP_004892162.1| - 1.4e-20 73.8 0.0 1.5e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|352681638|ref|YP_004892162.1| - 4.6e-08 33.1 0.8 0.00016 21.6 0.1 2.1 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family NdhN PF11909.8 gi|352681638|ref|YP_004892162.1| - 0.059 13.1 0.0 0.079 12.6 0.0 1.1 1 0 0 1 1 1 0 NADH-quinone oxidoreductase cyanobacterial subunit N GATase_3 PF07685.14 gi|352681639|ref|YP_004892163.1| - 5.5e-33 114.2 0.0 8.1e-33 113.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|352681639|ref|YP_004892163.1| - 1.9e-15 57.1 0.0 3.3e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|352681639|ref|YP_004892163.1| - 8.8e-15 55.1 2.6 6.1e-12 45.8 0.7 2.7 2 1 0 2 2 2 1 AAA domain IncF PF17626.2 gi|352681639|ref|YP_004892163.1| - 0.0019 18.5 0.1 0.0067 16.8 0.1 1.9 2 0 0 2 2 2 1 Inclusion membrane protein F TP_methylase PF00590.20 gi|352681640|ref|YP_004892164.1| - 4.2e-43 147.8 1.7 5e-43 147.5 1.7 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TusA PF01206.17 gi|352681641|ref|YP_004892165.1| - 1.5e-24 85.6 0.0 1.6e-24 85.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DsrC PF04358.13 gi|352681642|ref|YP_004892166.1| - 1.2e-35 122.3 0.0 1.4e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein MerR-DNA-bind PF09278.11 gi|352681642|ref|YP_004892166.1| - 0.082 13.5 0.0 0.84 10.2 0.0 2.1 2 1 0 2 2 2 0 MerR, DNA binding TrmB PF01978.19 gi|352681643|ref|YP_004892167.1| - 2.8e-08 33.5 0.0 4.6e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|352681643|ref|YP_004892167.1| - 1.4e-06 28.2 0.0 8.9e-05 22.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|352681643|ref|YP_004892167.1| - 0.0014 18.7 0.0 0.0026 17.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HemN_C PF06969.16 gi|352681643|ref|YP_004892167.1| - 0.0024 17.9 0.0 2.1 8.5 0.0 2.3 2 0 0 2 2 2 2 HemN C-terminal domain MarR_2 PF12802.7 gi|352681643|ref|YP_004892167.1| - 0.0051 16.7 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|352681643|ref|YP_004892167.1| - 0.0065 16.6 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) FaeA PF04703.12 gi|352681643|ref|YP_004892167.1| - 0.0075 16.6 0.1 0.015 15.6 0.1 1.5 1 0 0 1 1 1 1 FaeA-like protein HTH_28 PF13518.6 gi|352681643|ref|YP_004892167.1| - 0.0083 16.2 0.0 0.034 14.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|352681643|ref|YP_004892167.1| - 0.011 16.2 0.1 0.076 13.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|352681643|ref|YP_004892167.1| - 0.023 14.7 0.0 0.3 11.1 0.0 2.2 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|352681643|ref|YP_004892167.1| - 0.03 14.7 0.0 0.2 12.0 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|352681643|ref|YP_004892167.1| - 0.054 13.7 0.0 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|352681643|ref|YP_004892167.1| - 0.088 12.7 0.0 0.22 11.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|352681643|ref|YP_004892167.1| - 0.089 13.0 0.0 0.25 11.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.16 gi|352681643|ref|YP_004892167.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain DUF1641 PF07849.11 gi|352681646|ref|YP_004892170.1| - 8.1e-16 57.6 0.1 1.5e-15 56.7 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) DUF3562 PF12085.8 gi|352681646|ref|YP_004892170.1| - 0.019 14.6 0.1 0.38 10.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) B12-binding_2 PF02607.17 gi|352681646|ref|YP_004892170.1| - 0.028 14.9 0.9 0.05 14.0 0.1 1.9 2 0 0 2 2 2 0 B12 binding domain Pyr_redox_2 PF07992.14 gi|352681647|ref|YP_004892171.1| - 7.3e-12 45.1 0.1 1.5e-11 44.1 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|352681647|ref|YP_004892171.1| - 0.00014 21.6 2.4 0.0073 15.9 0.4 2.9 2 1 0 3 3 3 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|352681647|ref|YP_004892171.1| - 0.00038 19.4 0.1 0.00062 18.7 0.1 1.3 1 0 0 1 1 1 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|352681647|ref|YP_004892171.1| - 0.00071 19.6 0.1 0.067 13.2 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|352681647|ref|YP_004892171.1| - 0.04 13.0 2.2 0.092 11.8 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|352681647|ref|YP_004892171.1| - 0.069 13.4 0.4 0.27 11.5 0.2 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DUF2154 PF09922.9 gi|352681647|ref|YP_004892171.1| - 0.072 13.0 0.0 0.21 11.5 0.0 1.8 1 0 0 1 1 1 0 Cell wall-active antibiotics response 4TMS YvqF DUF1122 PF06557.11 gi|352681648|ref|YP_004892172.1| - 1.6e-29 102.6 0.0 2.5e-29 102.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) NIR_SIR PF01077.22 gi|352681650|ref|YP_004892174.1| - 2.3e-36 124.7 0.0 3.3e-36 124.2 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|352681650|ref|YP_004892174.1| - 1.3e-10 40.9 0.0 2.3e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.7 gi|352681650|ref|YP_004892174.1| - 0.002 18.7 0.9 0.0065 17.0 0.9 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352681650|ref|YP_004892174.1| - 0.0051 17.2 0.1 0.069 13.6 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352681650|ref|YP_004892174.1| - 0.0057 16.4 5.6 1.2 9.1 3.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352681650|ref|YP_004892174.1| - 0.0065 16.6 1.3 0.0065 16.6 1.3 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681650|ref|YP_004892174.1| - 0.65 10.2 7.5 4.1 7.6 4.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|352681650|ref|YP_004892174.1| - 0.84 10.2 5.7 0.11 13.1 1.0 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I NIR_SIR PF01077.22 gi|352681651|ref|YP_004892175.1| - 1.3e-30 106.0 0.0 2e-30 105.4 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|352681651|ref|YP_004892175.1| - 0.013 15.4 0.0 0.048 13.5 0.0 2.0 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain ImmE5 PF11480.8 gi|352681651|ref|YP_004892175.1| - 0.15 12.6 0.1 0.3 11.6 0.1 1.4 1 0 0 1 1 1 0 Colicin-E5 Imm protein Fer4_19 PF06902.11 gi|352681651|ref|YP_004892175.1| - 0.61 10.2 2.2 2.5 8.3 0.1 2.6 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster NIR_SIR PF01077.22 gi|352681652|ref|YP_004892176.1| - 1.3e-18 67.0 0.1 2e-18 66.4 0.1 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|352681652|ref|YP_004892176.1| - 3.5e-08 33.2 0.0 1.1e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain DUF4911 PF16256.5 gi|352681652|ref|YP_004892176.1| - 0.13 12.2 0.0 0.32 11.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4911) ImmE5 PF11480.8 gi|352681652|ref|YP_004892176.1| - 0.15 12.6 0.1 0.29 11.6 0.1 1.4 1 0 0 1 1 1 0 Colicin-E5 Imm protein NIR_SIR PF01077.22 gi|352681653|ref|YP_004892177.1| - 1.8e-34 118.5 0.0 2.7e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|352681653|ref|YP_004892177.1| - 1.1e-09 38.0 0.0 1.9e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|352681653|ref|YP_004892177.1| - 8.6e-06 25.4 7.9 0.0022 17.8 3.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|352681653|ref|YP_004892177.1| - 0.0019 18.7 3.4 0.0026 18.3 1.7 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|352681653|ref|YP_004892177.1| - 0.002 18.6 2.3 0.39 11.3 0.5 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_9 PF13187.6 gi|352681653|ref|YP_004892177.1| - 0.0038 17.4 1.4 0.012 15.8 1.4 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352681653|ref|YP_004892177.1| - 0.0044 17.7 0.5 0.8 10.5 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|352681653|ref|YP_004892177.1| - 0.0073 16.7 0.1 0.081 13.4 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352681653|ref|YP_004892177.1| - 0.0098 16.8 1.9 1.3 10.0 0.9 2.6 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|352681653|ref|YP_004892177.1| - 0.15 12.1 9.5 0.75 10.0 4.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681653|ref|YP_004892177.1| - 0.18 11.9 4.4 0.7 10.1 4.4 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352681653|ref|YP_004892177.1| - 1.8 8.7 10.2 0.081 13.1 2.1 2.4 3 1 1 4 4 4 0 4Fe-4S dicluster domain HemN_C PF06969.16 gi|352681655|ref|YP_004892179.1| - 0.022 14.8 0.0 0.054 13.6 0.0 1.7 1 0 0 1 1 1 0 HemN C-terminal domain TrmB PF01978.19 gi|352681655|ref|YP_004892179.1| - 0.026 14.4 0.0 0.24 11.3 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_8 PF02954.19 gi|352681655|ref|YP_004892179.1| - 0.027 14.2 0.0 0.082 12.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Nitrate_red_gam PF02665.14 gi|352681656|ref|YP_004892180.1| - 1e-38 133.1 20.9 1.6e-36 125.9 12.1 2.1 1 1 0 2 2 2 2 Nitrate reductase gamma subunit Fer4_8 PF13183.6 gi|352681657|ref|YP_004892181.1| - 3.6e-11 43.3 1.6 3.6e-11 43.3 1.6 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352681657|ref|YP_004892181.1| - 9.6e-10 38.9 1.9 9.6e-10 38.9 1.9 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|352681657|ref|YP_004892181.1| - 1e-09 38.5 1.9 1.7e-09 37.7 0.1 2.2 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_7 PF12838.7 gi|352681657|ref|YP_004892181.1| - 1.3e-09 38.5 14.2 9.1e-08 32.6 5.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352681657|ref|YP_004892181.1| - 4.8e-07 29.9 4.2 0.01 16.0 0.5 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352681657|ref|YP_004892181.1| - 1.7e-06 28.0 7.5 0.00015 21.8 9.8 2.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681657|ref|YP_004892181.1| - 5.3e-06 26.5 10.7 0.018 15.5 2.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|352681657|ref|YP_004892181.1| - 1.6e-05 24.7 11.3 0.012 15.7 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|352681657|ref|YP_004892181.1| - 7.9e-05 22.3 11.1 0.015 15.1 3.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681657|ref|YP_004892181.1| - 0.00012 22.1 3.9 0.2 11.8 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|352681657|ref|YP_004892181.1| - 0.00021 21.5 2.3 0.6 10.3 0.6 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681657|ref|YP_004892181.1| - 0.0029 17.6 14.1 0.15 12.2 4.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352681657|ref|YP_004892181.1| - 0.0043 18.0 14.1 0.017 16.0 10.4 3.3 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|352681657|ref|YP_004892181.1| - 0.044 14.6 8.1 1 10.3 0.2 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|352681657|ref|YP_004892181.1| - 0.2 12.6 15.8 1.2 10.3 2.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain DrsE PF02635.15 gi|352681658|ref|YP_004892182.1| - 1.1e-13 51.6 0.0 1.2e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|352681660|ref|YP_004892184.1| - 1.4e-16 60.1 0.0 1.5e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Metallophos_2 PF12850.7 gi|352681661|ref|YP_004892185.1| - 5.4e-31 108.0 0.1 6.7e-31 107.7 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|352681661|ref|YP_004892185.1| - 3.2e-07 31.0 0.2 9e-05 23.1 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|352681661|ref|YP_004892185.1| - 0.071 12.4 0.0 0.15 11.4 0.0 1.5 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily FAD_binding_2 PF00890.24 gi|352681662|ref|YP_004892186.1| - 8.8e-12 44.8 0.2 2.8e-11 43.1 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|352681662|ref|YP_004892186.1| - 3.7e-06 26.8 0.5 7.1e-05 22.5 0.5 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|352681662|ref|YP_004892186.1| - 0.0034 17.4 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|352681662|ref|YP_004892186.1| - 0.012 14.9 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|352681662|ref|YP_004892186.1| - 0.023 13.8 5.9 1.1 8.2 0.8 2.4 3 0 0 3 3 3 0 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|352681662|ref|YP_004892186.1| - 0.058 12.2 0.4 0.091 11.6 0.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_oxidored PF12831.7 gi|352681662|ref|YP_004892186.1| - 0.076 12.3 0.1 0.21 10.9 0.0 1.8 2 1 0 2 2 2 0 FAD dependent oxidoreductase PrmC_N PF17827.1 gi|352681662|ref|YP_004892186.1| - 0.16 12.6 0.1 8 7.1 0.0 2.5 2 0 0 2 2 2 0 PrmC N-terminal domain APS-reductase_C PF12139.8 gi|352681663|ref|YP_004892187.1| - 1.1e-24 86.4 0.0 1.6e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4 PF00037.27 gi|352681663|ref|YP_004892187.1| - 1.3e-08 34.3 13.5 7.8e-06 25.5 2.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|352681663|ref|YP_004892187.1| - 1.4e-08 35.2 25.3 5.6e-08 33.2 12.9 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681663|ref|YP_004892187.1| - 2.2e-08 33.8 13.8 3.6e-05 23.6 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352681663|ref|YP_004892187.1| - 2.2e-08 34.1 11.7 3.5e-08 33.5 11.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352681663|ref|YP_004892187.1| - 6.2e-08 33.5 7.1 0.00092 20.1 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|352681663|ref|YP_004892187.1| - 2.2e-07 30.9 12.2 3e-05 24.0 14.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352681663|ref|YP_004892187.1| - 2.4e-06 27.3 12.7 0.00087 19.2 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|352681663|ref|YP_004892187.1| - 3.5e-05 24.0 16.5 0.00042 20.6 1.9 2.5 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681663|ref|YP_004892187.1| - 0.0026 17.8 13.4 0.041 14.0 3.1 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|352681663|ref|YP_004892187.1| - 0.0042 17.9 17.3 0.088 13.8 3.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|352681663|ref|YP_004892187.1| - 0.0054 17.3 15.2 0.38 11.3 2.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352681663|ref|YP_004892187.1| - 0.017 15.6 14.9 0.46 11.0 14.9 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|352681663|ref|YP_004892187.1| - 0.031 15.1 6.6 0.18 12.7 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|352681663|ref|YP_004892187.1| - 0.12 12.6 10.5 0.16 12.2 1.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352681663|ref|YP_004892187.1| - 0.18 12.6 5.3 1.6 9.5 0.8 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|352681663|ref|YP_004892187.1| - 0.29 11.7 13.9 2.4 8.8 3.7 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I ATP-sulfurylase PF01747.17 gi|352681665|ref|YP_004892189.1| - 4.5e-71 238.7 0.0 6.5e-71 238.2 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|352681665|ref|YP_004892189.1| - 1.5e-35 122.2 0.0 2.9e-35 121.3 0.0 1.4 2 0 0 2 2 2 1 PUA-like domain KH_10 PF17905.1 gi|352681665|ref|YP_004892189.1| - 0.031 14.7 0.0 0.053 14.0 0.0 1.3 1 0 0 1 1 1 0 GLD-3 KH domain 5 DUF309 PF03745.14 gi|352681665|ref|YP_004892189.1| - 0.1 12.3 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF309) E1-E2_ATPase PF00122.20 gi|352681667|ref|YP_004892191.1| - 7.1e-49 165.8 2.7 7.2e-49 165.8 0.9 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|352681667|ref|YP_004892191.1| - 8.7e-41 140.5 1.8 1.6e-40 139.6 1.8 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|352681667|ref|YP_004892191.1| - 1.4e-18 67.1 0.0 8e-13 48.6 0.0 3.1 3 0 0 3 3 3 2 Heavy-metal-associated domain HAD PF12710.7 gi|352681667|ref|YP_004892191.1| - 2.6e-06 28.0 1.8 5.6e-06 26.9 0.5 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|352681667|ref|YP_004892191.1| - 0.00039 20.2 0.0 0.048 13.4 0.1 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|352681667|ref|YP_004892191.1| - 0.14 12.3 0.0 0.55 10.4 0.0 2.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase YHS PF04945.13 gi|352681668|ref|YP_004892192.1| - 1.6e-19 69.7 1.4 1.9e-19 69.5 1.4 1.1 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|352681668|ref|YP_004892192.1| - 0.00013 22.2 2.2 0.00017 21.9 2.2 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|352681668|ref|YP_004892192.1| - 0.00014 21.7 0.4 0.00018 21.4 0.4 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF3254 PF11630.8 gi|352681668|ref|YP_004892192.1| - 0.064 13.4 0.1 0.068 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3254) DUF2116 PF09889.9 gi|352681668|ref|YP_004892192.1| - 0.065 13.2 1.2 0.16 12.0 0.6 1.7 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) FAP206 PF12018.8 gi|352681668|ref|YP_004892192.1| - 0.071 12.6 0.1 0.077 12.5 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function AAA_16 PF13191.6 gi|352681669|ref|YP_004892193.1| - 0.035 14.5 0.0 0.043 14.2 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain HTH_24 PF13412.6 gi|352681671|ref|YP_004892195.1| - 2.2e-08 33.5 0.3 3.3e-08 32.9 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|352681671|ref|YP_004892195.1| - 5.6e-08 32.6 0.0 9.2e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|352681671|ref|YP_004892195.1| - 9.9e-06 25.4 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|352681671|ref|YP_004892195.1| - 4.6e-05 23.2 0.6 7.5e-05 22.5 0.6 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|352681671|ref|YP_004892195.1| - 0.00011 22.1 0.4 0.0003 20.7 0.4 1.7 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_micro PF17007.5 gi|352681671|ref|YP_004892195.1| - 0.00014 20.8 0.7 0.00018 20.5 0.7 1.1 1 0 0 1 1 1 1 HTH-like TrmB PF01978.19 gi|352681671|ref|YP_004892195.1| - 0.00045 20.0 0.1 0.00077 19.3 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|352681671|ref|YP_004892195.1| - 0.00066 20.0 0.2 0.0051 17.1 0.1 2.1 1 1 1 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.10 gi|352681671|ref|YP_004892195.1| - 0.00079 19.2 0.0 0.0018 18.0 0.0 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain FtsK_gamma PF09397.10 gi|352681671|ref|YP_004892195.1| - 0.01 15.6 0.3 0.016 15.0 0.3 1.3 1 0 0 1 1 1 0 Ftsk gamma domain HTH_11 PF08279.12 gi|352681671|ref|YP_004892195.1| - 0.014 15.3 0.2 0.025 14.5 0.2 1.3 1 0 0 1 1 1 0 HTH domain Penicillinase_R PF03965.16 gi|352681671|ref|YP_004892195.1| - 0.045 14.1 0.2 0.076 13.4 0.2 1.3 1 0 0 1 1 1 0 Penicillinase repressor Sun2_CC2 PF18580.1 gi|352681671|ref|YP_004892195.1| - 0.085 13.1 0.1 1.2 9.4 0.1 2.1 1 1 0 1 1 1 0 SUN2 coiled coil domain 2 HTH_27 PF13463.6 gi|352681671|ref|YP_004892195.1| - 0.088 13.3 0.1 0.17 12.4 0.1 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|352681671|ref|YP_004892195.1| - 0.11 12.8 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Crp PF00325.20 gi|352681671|ref|YP_004892195.1| - 0.16 11.6 1.6 3.1 7.5 0.1 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family DUF3742 PF12553.8 gi|352681671|ref|YP_004892195.1| - 0.21 11.7 1.7 0.55 10.4 0.2 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3742) DrsE PF02635.15 gi|352681673|ref|YP_004892197.1| - 9.4e-06 26.0 0.0 9.7e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|352681673|ref|YP_004892197.1| - 0.0056 16.6 0.0 0.016 15.1 0.0 1.6 1 1 1 2 2 2 1 DsrE/DsrF/DrsH-like family PIG-L PF02585.17 gi|352681673|ref|YP_004892197.1| - 0.053 14.1 0.0 0.063 13.9 0.0 1.2 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase Stevor PF17410.2 gi|352681674|ref|YP_004892198.1| - 0.89 9.0 2.3 1.1 8.7 2.3 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Zip PF02535.22 gi|352681675|ref|YP_004892199.1| - 9.6e-05 21.7 23.4 0.0012 18.1 10.0 2.8 2 1 1 3 3 3 2 ZIP Zinc transporter ABC2_membrane_3 PF12698.7 gi|352681675|ref|YP_004892199.1| - 5.6 6.0 17.0 0.83 8.7 12.8 2.0 2 1 0 2 2 2 0 ABC-2 family transporter protein XPG_I PF00867.18 gi|352681676|ref|YP_004892200.1| - 2e-27 95.4 0.0 3.5e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|352681676|ref|YP_004892200.1| - 6e-24 84.4 0.0 1.1e-23 83.6 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|352681676|ref|YP_004892200.1| - 3.2e-06 27.6 0.2 1.2e-05 25.9 0.0 2.0 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold PP28 PF10252.9 gi|352681676|ref|YP_004892200.1| - 0.004 17.6 1.2 0.0085 16.5 1.2 1.5 1 0 0 1 1 1 1 Casein kinase substrate phosphoprotein PP28 DUF2458 PF10454.9 gi|352681676|ref|YP_004892200.1| - 0.0073 16.0 0.0 0.016 14.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF2458) PEP-utilisers_N PF05524.13 gi|352681676|ref|YP_004892200.1| - 0.02 15.0 6.3 1.7 8.8 0.8 3.6 4 0 0 4 4 4 0 PEP-utilising enzyme, N-terminal DUF4192 PF13830.6 gi|352681676|ref|YP_004892200.1| - 0.23 11.5 6.1 0.062 13.3 2.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) EAP30 PF04157.16 gi|352681677|ref|YP_004892201.1| - 0.00095 18.5 0.1 0.00099 18.5 0.1 1.0 1 0 0 1 1 1 1 EAP30/Vps36 family HTH_12 PF08461.10 gi|352681677|ref|YP_004892201.1| - 0.015 15.2 0.1 0.02 14.8 0.1 1.2 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_42 PF06224.12 gi|352681677|ref|YP_004892201.1| - 0.022 14.3 0.0 0.023 14.2 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain EcoEI_R_C PF08463.10 gi|352681677|ref|YP_004892201.1| - 0.038 14.1 0.0 0.041 14.0 0.0 1.0 1 0 0 1 1 1 0 EcoEI R protein C-terminal MU2_FHA PF18221.1 gi|352681677|ref|YP_004892201.1| - 0.067 13.2 0.3 0.082 13.0 0.3 1.1 1 0 0 1 1 1 0 Mutator 2 Fork head associated domain RNA_pol_Rpb1_3 PF04983.18 gi|352681677|ref|YP_004892201.1| - 0.078 12.9 0.1 0.091 12.7 0.1 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 3 Peptidase_S24 PF00717.23 gi|352681677|ref|YP_004892201.1| - 0.1 12.6 0.5 0.17 11.9 0.4 1.4 1 1 0 1 1 1 0 Peptidase S24-like AAA PF00004.29 gi|352681678|ref|YP_004892202.1| - 5.9e-100 330.9 0.0 1.9e-49 167.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|352681678|ref|YP_004892202.1| - 1.2e-35 121.1 3.7 7.2e-18 64.1 0.5 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|352681678|ref|YP_004892202.1| - 2.8e-29 101.1 0.4 2.4e-28 98.1 0.9 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|352681678|ref|YP_004892202.1| - 1.4e-16 60.6 0.0 1.4e-07 31.4 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|352681678|ref|YP_004892202.1| - 1.1e-13 51.7 1.8 9.5e-05 22.7 0.0 4.9 3 2 1 5 5 4 2 AAA domain AAA_2 PF07724.14 gi|352681678|ref|YP_004892202.1| - 3.9e-13 49.9 0.0 1.5e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|352681678|ref|YP_004892202.1| - 4.6e-13 49.1 0.8 3.3e-05 23.3 0.0 3.5 3 0 0 3 3 3 2 TIP49 P-loop domain CDC48_2 PF02933.17 gi|352681678|ref|YP_004892202.1| - 8.5e-13 47.9 0.2 2.5e-12 46.4 0.2 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|352681678|ref|YP_004892202.1| - 4.6e-12 46.7 1.4 3.6e-05 24.2 0.0 4.1 3 2 0 4 4 3 2 AAA ATPase domain AAA_5 PF07728.14 gi|352681678|ref|YP_004892202.1| - 6.8e-11 42.3 0.8 0.00061 19.8 0.1 3.7 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) UFD1 PF03152.14 gi|352681678|ref|YP_004892202.1| - 1.9e-10 40.5 0.1 4.2e-10 39.4 0.1 1.6 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 AAA_33 PF13671.6 gi|352681678|ref|YP_004892202.1| - 3.7e-10 40.1 0.0 0.00054 20.1 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|352681678|ref|YP_004892202.1| - 6e-10 39.3 0.0 9e-05 22.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|352681678|ref|YP_004892202.1| - 1.2e-09 38.1 0.1 0.0045 16.7 0.0 3.5 4 0 0 4 4 3 2 IstB-like ATP binding protein Vps4_C PF09336.10 gi|352681678|ref|YP_004892202.1| - 1.4e-08 34.6 0.9 0.00084 19.3 0.0 3.4 4 0 0 4 4 2 2 Vps4 C terminal oligomerisation domain AAA_18 PF13238.6 gi|352681678|ref|YP_004892202.1| - 2.7e-08 34.4 0.0 0.009 16.6 0.0 3.0 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|352681678|ref|YP_004892202.1| - 3.7e-08 33.8 0.1 0.008 16.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.6 gi|352681678|ref|YP_004892202.1| - 3.8e-07 30.0 0.0 0.041 13.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|352681678|ref|YP_004892202.1| - 8.3e-07 28.6 0.8 0.041 13.3 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|352681678|ref|YP_004892202.1| - 4.3e-06 27.1 0.0 0.097 13.1 0.0 2.5 2 0 0 2 2 2 2 RNA helicase PhoH PF02562.16 gi|352681678|ref|YP_004892202.1| - 5e-06 26.1 0.8 0.16 11.4 0.0 3.4 3 0 0 3 3 3 2 PhoH-like protein Sigma54_activat PF00158.26 gi|352681678|ref|YP_004892202.1| - 7.1e-06 25.8 0.1 0.14 11.9 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|352681678|ref|YP_004892202.1| - 2.2e-05 24.1 0.1 0.23 11.0 0.0 3.0 2 2 0 2 2 2 2 P-loop containing dynein motor region ATPase PF06745.13 gi|352681678|ref|YP_004892202.1| - 2.3e-05 23.9 1.7 0.2 11.0 0.0 3.4 2 1 1 3 3 3 2 KaiC Zeta_toxin PF06414.12 gi|352681678|ref|YP_004892202.1| - 2.4e-05 23.7 0.1 0.18 11.1 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin TsaE PF02367.17 gi|352681678|ref|YP_004892202.1| - 2.4e-05 24.3 0.0 0.31 11.1 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|352681678|ref|YP_004892202.1| - 2.8e-05 23.4 0.0 0.23 10.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|352681678|ref|YP_004892202.1| - 5.8e-05 23.6 0.0 0.6 10.6 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_25 PF13481.6 gi|352681678|ref|YP_004892202.1| - 7.5e-05 22.4 3.7 1.3 8.6 0.1 3.9 4 0 0 4 4 4 2 AAA domain ATPase_2 PF01637.18 gi|352681678|ref|YP_004892202.1| - 0.00044 20.2 0.3 0.14 12.1 0.1 3.3 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_3 PF07726.11 gi|352681678|ref|YP_004892202.1| - 0.00071 19.4 0.0 1.5 8.7 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|352681678|ref|YP_004892202.1| - 0.00096 18.3 0.2 0.91 8.6 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|352681678|ref|YP_004892202.1| - 0.0015 18.5 0.6 3.3 7.6 0.0 3.2 3 0 0 3 3 3 0 NACHT domain DUF2075 PF09848.9 gi|352681678|ref|YP_004892202.1| - 0.0016 17.7 0.1 0.63 9.2 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|352681678|ref|YP_004892202.1| - 0.0021 17.8 0.4 2.2 8.0 0.0 3.0 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|352681678|ref|YP_004892202.1| - 0.0023 17.8 0.0 0.5 10.2 0.0 3.1 3 1 0 3 3 2 1 Bacterial dnaA protein Sigma54_activ_2 PF14532.6 gi|352681678|ref|YP_004892202.1| - 0.0024 18.0 0.0 2.7 8.1 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_17 PF13207.6 gi|352681678|ref|YP_004892202.1| - 0.0025 18.2 0.0 5.1 7.5 0.0 3.0 2 0 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|352681678|ref|YP_004892202.1| - 0.0028 17.4 0.0 0.11 12.2 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|352681678|ref|YP_004892202.1| - 0.0044 16.8 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain Guanylate_kin PF00625.21 gi|352681678|ref|YP_004892202.1| - 0.0067 16.1 0.3 29 4.3 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase T2SSE PF00437.20 gi|352681678|ref|YP_004892202.1| - 0.0067 15.5 0.0 3.3 6.7 0.0 3.2 3 0 0 3 3 3 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|352681678|ref|YP_004892202.1| - 0.011 14.9 0.0 3.3 6.8 0.0 2.7 2 0 0 2 2 2 0 NB-ARC domain PduV-EutP PF10662.9 gi|352681678|ref|YP_004892202.1| - 0.013 15.2 0.0 3 7.6 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation IPT PF01745.16 gi|352681678|ref|YP_004892202.1| - 0.015 14.7 0.3 2.5 7.4 0.1 2.5 2 0 0 2 2 2 0 Isopentenyl transferase Cytidylate_kin PF02224.18 gi|352681678|ref|YP_004892202.1| - 0.03 14.1 0.1 11 5.7 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase ATP-synt_ab PF00006.25 gi|352681678|ref|YP_004892202.1| - 0.037 13.7 0.1 4.5 6.9 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|352681678|ref|YP_004892202.1| - 0.045 13.2 0.0 9.9 5.5 0.0 3.3 3 1 1 4 4 3 0 Bacterial TniB protein Rad17 PF03215.15 gi|352681678|ref|YP_004892202.1| - 0.045 13.7 0.0 12 5.8 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_19 PF13245.6 gi|352681678|ref|YP_004892202.1| - 0.052 13.9 6.2 3.9 7.8 0.0 3.5 4 0 0 4 4 3 0 AAA domain cobW PF02492.19 gi|352681678|ref|YP_004892202.1| - 0.074 12.6 0.0 13 5.3 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Cytidylate_kin2 PF13189.6 gi|352681678|ref|YP_004892202.1| - 0.089 12.9 0.1 15 5.6 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family SKI PF01202.22 gi|352681678|ref|YP_004892202.1| - 0.092 12.9 0.0 14 5.7 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|352681678|ref|YP_004892202.1| - 0.1 12.4 0.1 22 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain AFG1_ATPase PF03969.16 gi|352681678|ref|YP_004892202.1| - 0.11 11.4 0.0 10 4.9 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase NTPase_1 PF03266.15 gi|352681678|ref|YP_004892202.1| - 0.24 11.3 5.7 15 5.5 0.0 4.3 3 2 2 5 5 4 0 NTPase EF1_GNE PF00736.19 gi|352681679|ref|YP_004892203.1| - 6.8e-14 51.8 0.0 7.5e-14 51.7 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|352681680|ref|YP_004892204.1| - 1e-11 44.6 1.9 1.8e-10 40.5 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.12 gi|352681680|ref|YP_004892204.1| - 0.00073 19.0 2.9 0.056 13.0 0.0 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|352681680|ref|YP_004892204.1| - 0.0011 18.6 0.4 0.76 9.5 0.0 2.1 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein Zn_Tnp_IS1595 PF12760.7 gi|352681680|ref|YP_004892204.1| - 0.0017 18.3 2.9 0.0047 16.9 2.9 1.7 1 1 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|352681680|ref|YP_004892204.1| - 0.002 18.5 0.7 1.6 9.3 0.0 2.2 2 0 0 2 2 2 2 Zinc-finger double domain zinc_ribbon_4 PF13717.6 gi|352681680|ref|YP_004892204.1| - 0.0031 17.4 1.3 0.0045 16.9 1.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain tRNA-synt_1f PF01921.18 gi|352681680|ref|YP_004892204.1| - 0.0065 15.4 0.0 0.0065 15.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) Rubredoxin PF00301.20 gi|352681680|ref|YP_004892204.1| - 0.0066 16.4 0.8 2.4 8.3 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin zf-ribbon_3 PF13248.6 gi|352681680|ref|YP_004892204.1| - 0.0083 15.5 3.7 0.26 10.8 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-Mss51 PF13824.6 gi|352681680|ref|YP_004892204.1| - 0.0093 16.0 3.0 0.54 10.4 0.2 2.1 1 1 1 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|352681680|ref|YP_004892204.1| - 0.011 15.4 4.5 0.29 10.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|352681680|ref|YP_004892204.1| - 0.018 15.1 3.3 2.4 8.3 0.7 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C2H2 PF00096.26 gi|352681680|ref|YP_004892204.1| - 0.023 15.2 3.5 1.4 9.5 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|352681680|ref|YP_004892204.1| - 0.029 14.5 2.4 0.094 12.8 2.4 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|352681680|ref|YP_004892204.1| - 0.033 13.8 0.5 1.2 8.9 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|352681680|ref|YP_004892204.1| - 0.046 14.0 1.8 6.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase PhnA_Zn_Ribbon PF08274.12 gi|352681680|ref|YP_004892204.1| - 0.047 13.7 0.4 1.5 8.8 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Ogr_Delta PF04606.12 gi|352681680|ref|YP_004892204.1| - 0.056 13.4 2.4 0.51 10.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ISL3 PF14690.6 gi|352681680|ref|YP_004892204.1| - 0.058 14.1 1.5 0.7 10.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Elf1 PF05129.13 gi|352681680|ref|YP_004892204.1| - 0.058 13.4 0.8 0.15 12.1 0.8 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like HypA PF01155.19 gi|352681680|ref|YP_004892204.1| - 0.063 13.3 0.1 0.078 13.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sgf11 PF08209.11 gi|352681680|ref|YP_004892204.1| - 0.064 12.8 2.0 0.4 10.3 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rubredoxin_2 PF18073.1 gi|352681680|ref|YP_004892204.1| - 0.074 12.8 2.1 7.4 6.4 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_ribbon_SprT PF17283.2 gi|352681680|ref|YP_004892204.1| - 0.09 12.7 3.7 0.28 11.1 3.7 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|352681680|ref|YP_004892204.1| - 0.12 12.4 2.2 0.95 9.4 2.2 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF2387 PF09526.10 gi|352681680|ref|YP_004892204.1| - 0.12 12.6 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf_UBZ PF18439.1 gi|352681680|ref|YP_004892204.1| - 0.16 11.6 1.2 3.4 7.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 gi|352681680|ref|YP_004892204.1| - 0.18 12.1 2.0 11 6.5 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TFIIS_C PF01096.18 gi|352681680|ref|YP_004892204.1| - 0.2 11.5 1.2 8 6.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) CpXC PF14353.6 gi|352681680|ref|YP_004892204.1| - 0.63 10.1 2.5 3.6 7.7 0.1 2.0 1 1 0 2 2 2 0 CpXC protein Nop10p PF04135.12 gi|352681680|ref|YP_004892204.1| - 0.71 10.0 2.7 4.6 7.3 0.2 2.2 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-C2H2_4 PF13894.6 gi|352681680|ref|YP_004892204.1| - 0.94 10.5 3.6 13 7.0 0.4 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-tcix PF14952.6 gi|352681680|ref|YP_004892204.1| - 2.8 7.6 6.5 11 5.7 0.7 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Peptidase_S9 PF00326.21 gi|352681681|ref|YP_004892205.1| - 2.9e-39 134.7 0.0 4e-39 134.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|352681681|ref|YP_004892205.1| - 4e-10 39.7 0.0 4.7e-07 29.7 0.0 2.6 2 1 1 3 3 3 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|352681681|ref|YP_004892205.1| - 1.1e-09 38.3 0.0 1e-06 28.6 0.0 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|352681681|ref|YP_004892205.1| - 1.4e-08 34.3 0.0 9e-05 21.8 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 PD40 PF07676.12 gi|352681681|ref|YP_004892205.1| - 3.3e-07 30.1 4.4 0.045 13.7 0.3 4.4 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|352681681|ref|YP_004892205.1| - 9.8e-05 22.0 0.0 0.00029 20.5 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family LIP PF03583.14 gi|352681681|ref|YP_004892205.1| - 0.00013 21.4 0.0 0.21 10.9 0.0 2.2 2 0 0 2 2 2 2 Secretory lipase Abhydrolase_6 PF12697.7 gi|352681681|ref|YP_004892205.1| - 0.00018 22.2 1.3 0.00018 22.2 1.3 2.9 2 2 0 2 2 1 1 Alpha/beta hydrolase family Abhydrolase_3 PF07859.13 gi|352681681|ref|YP_004892205.1| - 0.0014 18.5 0.1 0.043 13.7 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.20 gi|352681681|ref|YP_004892205.1| - 0.0035 17.0 0.0 0.0083 15.8 0.0 1.6 1 0 0 1 1 1 1 Putative esterase DUF2920 PF11144.8 gi|352681681|ref|YP_004892205.1| - 0.05 12.8 0.0 0.18 10.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Abhydrolase_2 PF02230.16 gi|352681681|ref|YP_004892205.1| - 0.12 12.1 0.0 5.8 6.7 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Chlorophyllase2 PF12740.7 gi|352681681|ref|YP_004892205.1| - 0.2 10.5 0.0 0.34 9.8 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme PQQ PF01011.21 gi|352681681|ref|YP_004892205.1| - 2 8.5 4.6 3 7.9 0.1 3.5 4 0 0 4 4 4 0 PQQ enzyme repeat Spermine_synth PF01564.17 gi|352681682|ref|YP_004892206.1| - 1e-42 145.7 0.0 1.6e-42 145.1 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|352681682|ref|YP_004892206.1| - 2.7e-09 36.8 0.3 9.5e-09 35.0 0.1 2.0 2 0 0 2 2 2 1 Spermidine synthase tetramerisation domain Methyltransf_12 PF08242.12 gi|352681682|ref|YP_004892206.1| - 2.2e-05 25.1 0.0 6.1e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352681682|ref|YP_004892206.1| - 2.5e-05 24.9 0.0 8.6e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|352681682|ref|YP_004892206.1| - 3.8e-05 23.5 0.0 5.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|352681682|ref|YP_004892206.1| - 8.8e-05 22.2 0.0 0.00022 20.9 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|352681682|ref|YP_004892206.1| - 0.0092 16.6 0.0 0.019 15.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|352681682|ref|YP_004892206.1| - 0.035 13.4 0.0 0.067 12.5 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain Methyltransf_30 PF05430.11 gi|352681682|ref|YP_004892206.1| - 0.097 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Phenol_Hydrox PF02332.18 gi|352681683|ref|YP_004892207.1| - 0.0004 20.0 0.1 0.00095 18.8 0.1 1.8 1 1 1 2 2 2 1 Methane/Phenol/Toluene Hydroxylase HTH_3 PF01381.22 gi|352681683|ref|YP_004892207.1| - 0.00078 19.4 0.1 0.0029 17.6 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix Rubrerythrin PF02915.17 gi|352681683|ref|YP_004892207.1| - 0.0058 17.0 1.0 0.0058 17.0 1.0 2.3 2 1 0 2 2 2 1 Rubrerythrin HTH_17 PF12728.7 gi|352681683|ref|YP_004892207.1| - 0.01 16.0 0.1 0.029 14.5 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|352681683|ref|YP_004892207.1| - 0.016 15.0 0.3 0.043 13.6 0.3 1.8 1 0 0 1 1 1 0 Homeodomain-like domain HTH_1 PF00126.27 gi|352681683|ref|YP_004892207.1| - 0.022 14.7 0.5 0.064 13.2 0.6 1.9 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.6 gi|352681683|ref|YP_004892207.1| - 0.027 14.8 3.6 0.15 12.5 3.6 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain Ferritin_2 PF13668.6 gi|352681683|ref|YP_004892207.1| - 0.028 14.6 0.0 2.7 8.2 0.0 2.6 1 1 1 2 2 2 0 Ferritin-like domain HTH_Tnp_1 PF01527.20 gi|352681683|ref|YP_004892207.1| - 0.12 12.7 0.2 0.12 12.7 0.2 2.0 2 1 0 2 2 2 0 Transposase LacI PF00356.21 gi|352681683|ref|YP_004892207.1| - 0.13 12.1 1.3 0.36 10.6 1.3 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family MarR_2 PF12802.7 gi|352681683|ref|YP_004892207.1| - 0.23 11.4 0.3 0.23 11.4 0.3 2.0 3 0 0 3 3 3 0 MarR family ATP-synt_ab PF00006.25 gi|352681685|ref|YP_004892209.1| - 1.1e-63 214.7 0.0 1.5e-63 214.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|352681685|ref|YP_004892209.1| - 1.1e-08 35.4 1.8 2.9e-08 34.1 1.8 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain RHH_1 PF01402.21 gi|352681686|ref|YP_004892210.1| - 1.2e-12 47.3 0.4 1.5e-12 46.9 0.4 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|352681686|ref|YP_004892210.1| - 0.00015 21.9 0.0 0.00016 21.8 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|352681686|ref|YP_004892210.1| - 0.071 13.0 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB ParD_antitoxin PF03693.14 gi|352681686|ref|YP_004892210.1| - 0.14 12.6 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH tRNA-synt_2d PF01409.20 gi|352681687|ref|YP_004892211.1| - 6.6e-78 261.6 0.0 8.6e-78 261.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|352681687|ref|YP_004892211.1| - 4.8e-09 36.0 0.0 4.1e-07 29.7 0.0 2.1 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|352681687|ref|YP_004892211.1| - 4.6e-08 32.5 0.1 0.0014 17.7 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) RNA_pol PF00940.19 gi|352681687|ref|YP_004892211.1| - 0.0097 14.8 0.0 0.014 14.2 0.0 1.1 1 0 0 1 1 1 1 DNA-dependent RNA polymerase HTH_Crp_2 PF13545.6 gi|352681687|ref|YP_004892211.1| - 0.012 15.6 1.1 0.045 13.7 0.3 2.5 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Dimerisation2 PF16864.5 gi|352681687|ref|YP_004892211.1| - 0.039 13.9 0.0 0.094 12.7 0.0 1.6 1 0 0 1 1 1 0 Dimerisation domain HTH_20 PF12840.7 gi|352681687|ref|YP_004892211.1| - 0.048 13.7 0.5 0.3 11.2 0.3 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2639 PF11121.8 gi|352681687|ref|YP_004892211.1| - 0.1 12.7 0.1 0.27 11.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2639) DUF1495 PF07381.11 gi|352681687|ref|YP_004892211.1| - 0.12 12.2 0.1 0.36 10.7 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Cas_Cmr5 PF09701.10 gi|352681688|ref|YP_004892212.1| - 0.11 12.9 0.0 0.26 11.6 0.0 1.6 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Cmr5) RimK PF08443.11 gi|352681689|ref|YP_004892213.1| - 5.3e-39 133.8 0.0 6.5e-39 133.5 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|352681689|ref|YP_004892213.1| - 8.5e-14 51.3 0.0 1.2e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|352681689|ref|YP_004892213.1| - 7.5e-13 48.8 0.0 1.1e-12 48.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|352681689|ref|YP_004892213.1| - 4.1e-08 33.0 0.0 1.3e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|352681689|ref|YP_004892213.1| - 5.3e-05 22.6 0.0 0.013 14.8 0.0 2.3 2 1 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_5 PF13549.6 gi|352681689|ref|YP_004892213.1| - 0.00066 19.2 0.0 0.003 17.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|352681689|ref|YP_004892213.1| - 0.0011 18.6 0.0 0.0017 17.9 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|352681689|ref|YP_004892213.1| - 0.0011 18.8 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|352681689|ref|YP_004892213.1| - 0.0087 15.6 0.0 0.057 12.9 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus TTL PF03133.15 gi|352681689|ref|YP_004892213.1| - 0.034 13.3 0.0 0.15 11.1 0.0 1.8 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family Lyase_1 PF00206.20 gi|352681690|ref|YP_004892214.1| - 1.2e-40 139.8 0.0 1.8e-40 139.3 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|352681690|ref|YP_004892214.1| - 0.00046 20.9 0.0 0.0025 18.6 0.0 2.3 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal CPSase_sm_chain PF00988.22 gi|352681691|ref|YP_004892215.1| - 1.3e-49 167.3 0.1 1.9e-49 166.7 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|352681691|ref|YP_004892215.1| - 1e-39 136.3 0.0 1.3e-39 135.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|352681691|ref|YP_004892215.1| - 3.5e-11 43.3 0.0 7.2e-09 35.7 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 DUF3905 PF13045.6 gi|352681691|ref|YP_004892215.1| - 0.081 12.9 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3905) AAA_25 PF13481.6 gi|352681693|ref|YP_004892217.1| - 3.4e-05 23.5 0.1 0.00026 20.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352681693|ref|YP_004892217.1| - 4.6e-05 23.7 0.0 7.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|352681693|ref|YP_004892217.1| - 4.8e-05 22.2 0.0 0.23 10.1 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein AAA_16 PF13191.6 gi|352681693|ref|YP_004892217.1| - 0.00018 21.9 0.0 0.00043 20.7 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain ATPase PF06745.13 gi|352681693|ref|YP_004892217.1| - 0.00037 19.9 0.0 0.56 9.5 0.0 2.7 1 1 1 2 2 2 2 KaiC AAA_24 PF13479.6 gi|352681693|ref|YP_004892217.1| - 0.00063 19.5 0.0 0.0015 18.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|352681693|ref|YP_004892217.1| - 0.0034 17.8 0.0 0.0068 16.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|352681693|ref|YP_004892217.1| - 0.0078 16.0 0.0 0.012 15.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain RNA12 PF10443.9 gi|352681693|ref|YP_004892217.1| - 0.01 14.6 0.0 0.018 13.8 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein AAA_28 PF13521.6 gi|352681693|ref|YP_004892217.1| - 0.017 15.4 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|352681693|ref|YP_004892217.1| - 0.021 14.8 0.0 0.047 13.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain CobU PF02283.16 gi|352681693|ref|YP_004892217.1| - 0.051 13.2 0.0 0.12 11.9 0.0 1.6 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_29 PF13555.6 gi|352681693|ref|YP_004892217.1| - 0.065 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|352681693|ref|YP_004892217.1| - 0.067 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|352681693|ref|YP_004892217.1| - 0.081 12.7 0.0 0.98 9.1 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|352681693|ref|YP_004892217.1| - 0.11 13.1 0.0 0.2 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Prot_ATP_ID_OB PF16450.5 gi|352681693|ref|YP_004892217.1| - 0.11 12.5 0.3 0.66 10.0 0.1 2.5 2 1 0 2 2 2 0 Proteasomal ATPase OB C-terminal domain AAA_5 PF07728.14 gi|352681693|ref|YP_004892217.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|352681693|ref|YP_004892217.1| - 0.15 12.6 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain Img2 PF05046.14 gi|352681694|ref|YP_004892218.1| - 0.078 13.3 0.0 0.081 13.2 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DFP PF04127.15 gi|352681695|ref|YP_004892219.1| - 2.1e-46 158.1 0.0 2.4e-44 151.4 0.0 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|352681695|ref|YP_004892219.1| - 2.3e-33 115.2 0.2 3.6e-33 114.6 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein Glyco_trans_4_4 PF13579.6 gi|352681695|ref|YP_004892219.1| - 1 9.8 14.6 2.2 8.7 2.8 3.3 2 2 0 2 2 2 0 Glycosyl transferase 4-like domain zinc_ribbon_2 PF13240.6 gi|352681696|ref|YP_004892220.1| - 0.00023 20.8 0.3 0.45 10.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352681696|ref|YP_004892220.1| - 0.00027 20.8 3.5 0.034 14.1 5.1 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|352681696|ref|YP_004892220.1| - 0.00048 19.6 0.7 0.00079 18.9 0.7 1.4 1 1 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|352681696|ref|YP_004892220.1| - 0.00063 19.6 0.1 0.0011 18.8 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Cys_rich_CPXG PF14255.6 gi|352681696|ref|YP_004892220.1| - 0.0014 18.5 0.3 1.2 9.0 0.1 2.2 1 1 1 2 2 2 2 Cysteine-rich CPXCG Sgf11 PF08209.11 gi|352681696|ref|YP_004892220.1| - 0.0035 16.9 0.8 0.59 9.8 0.1 2.2 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) zf-LITAF-like PF10601.9 gi|352681696|ref|YP_004892220.1| - 0.0035 17.6 1.3 1.1 9.5 0.1 2.1 1 1 1 2 2 2 2 LITAF-like zinc ribbon domain DZR PF12773.7 gi|352681696|ref|YP_004892220.1| - 0.0036 17.3 0.9 0.0061 16.6 0.9 1.4 1 1 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|352681696|ref|YP_004892220.1| - 0.0061 16.4 1.5 0.63 10.0 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) CpXC PF14353.6 gi|352681696|ref|YP_004892220.1| - 0.0065 16.5 0.3 0.79 9.8 0.0 2.1 1 1 1 2 2 2 1 CpXC protein zinc_ribbon_10 PF10058.9 gi|352681696|ref|YP_004892220.1| - 0.0069 16.1 0.7 0.012 15.3 0.7 1.5 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein NOB1_Zn_bind PF08772.11 gi|352681696|ref|YP_004892220.1| - 0.0071 16.5 0.1 0.11 12.7 0.1 2.0 1 1 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_SprT PF17283.2 gi|352681696|ref|YP_004892220.1| - 0.0073 16.2 0.5 0.011 15.7 0.5 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain DUF3268 PF11672.8 gi|352681696|ref|YP_004892220.1| - 0.0075 16.6 0.3 0.07 13.5 0.0 2.0 1 1 1 2 2 2 1 zinc-finger-containing domain zf-ribbon_3 PF13248.6 gi|352681696|ref|YP_004892220.1| - 0.0088 15.4 7.0 0.4 10.1 7.1 2.1 1 1 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|352681696|ref|YP_004892220.1| - 0.0088 15.9 4.2 0.031 14.2 4.2 1.8 1 1 0 1 1 1 1 Nudix N-terminal DUF1610 PF07754.11 gi|352681696|ref|YP_004892220.1| - 0.014 15.3 1.4 2 8.4 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.10 gi|352681696|ref|YP_004892220.1| - 0.016 15.3 2.4 0.97 9.6 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|352681696|ref|YP_004892220.1| - 0.024 14.8 2.2 0.21 11.8 0.1 2.6 3 0 0 3 3 2 0 C4-type zinc ribbon domain Prok-RING_1 PF14446.6 gi|352681696|ref|YP_004892220.1| - 0.026 14.4 0.8 1.2 9.1 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf_UBZ PF18439.1 gi|352681696|ref|YP_004892220.1| - 0.027 14.0 0.2 5.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger FYDLN_acid PF09538.10 gi|352681696|ref|YP_004892220.1| - 0.028 15.1 1.1 0.51 11.0 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) FYVE PF01363.21 gi|352681696|ref|YP_004892220.1| - 0.029 14.5 0.1 0.029 14.5 0.1 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-ISL3 PF14690.6 gi|352681696|ref|YP_004892220.1| - 0.043 14.5 2.9 1.7 9.4 0.7 2.3 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-CHCC PF10276.9 gi|352681696|ref|YP_004892220.1| - 0.044 13.8 2.6 0.099 12.7 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf_C2H2_10 PF18414.1 gi|352681696|ref|YP_004892220.1| - 0.051 13.1 1.6 4.5 6.9 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger MRNIP PF15749.5 gi|352681696|ref|YP_004892220.1| - 0.061 14.1 0.0 0.065 14.0 0.0 1.1 1 0 0 1 1 1 0 MRN-interacting protein Zn_Tnp_IS91 PF14319.6 gi|352681696|ref|YP_004892220.1| - 0.068 13.2 0.2 0.089 12.8 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-H2C2_2 PF13465.6 gi|352681696|ref|YP_004892220.1| - 0.069 13.6 1.5 6.5 7.4 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain HypA PF01155.19 gi|352681696|ref|YP_004892220.1| - 0.071 13.1 0.3 0.092 12.8 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2614 PF11023.8 gi|352681696|ref|YP_004892220.1| - 0.078 13.1 0.1 0.08 13.0 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain UPF0547 PF10571.9 gi|352681696|ref|YP_004892220.1| - 0.099 12.7 4.8 1.6 8.9 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ACC PF17848.1 gi|352681696|ref|YP_004892220.1| - 0.11 12.6 4.9 2 8.5 0.0 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-Di19 PF05605.12 gi|352681696|ref|YP_004892220.1| - 0.11 12.8 3.6 2.3 8.6 0.2 2.1 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Ribosomal_L32p PF01783.23 gi|352681696|ref|YP_004892220.1| - 0.17 12.1 3.6 0.71 10.2 3.6 1.9 1 1 0 1 1 1 0 Ribosomal L32p protein family Ogr_Delta PF04606.12 gi|352681696|ref|YP_004892220.1| - 0.23 11.5 2.2 3.8 7.6 0.2 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Rad50_zn_hook PF04423.14 gi|352681696|ref|YP_004892220.1| - 0.29 11.0 2.0 1.2 9.1 0.0 2.3 3 0 0 3 3 2 0 Rad50 zinc hook motif zf-C2H2 PF00096.26 gi|352681696|ref|YP_004892220.1| - 0.29 11.7 4.9 3.1 8.4 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf_C2H2_6 PF18450.1 gi|352681696|ref|YP_004892220.1| - 0.34 10.7 2.8 2.4 8.0 0.2 2.2 2 0 0 2 2 2 0 Zinc Finger domain ADK_lid PF05191.14 gi|352681696|ref|YP_004892220.1| - 0.39 10.7 4.2 10 6.2 0.4 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF2225 PF09986.9 gi|352681696|ref|YP_004892220.1| - 0.43 10.3 1.7 1.7 8.3 1.7 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-C2H2_3 PF13878.6 gi|352681696|ref|YP_004892220.1| - 0.69 9.8 3.3 0.91 9.4 0.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2HC_2 PF13913.6 gi|352681696|ref|YP_004892220.1| - 1.1 9.3 8.2 1.3 9.0 1.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_9 PF14369.6 gi|352681696|ref|YP_004892220.1| - 1.1 9.6 4.4 8.1 6.8 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon Lar_restr_allev PF14354.6 gi|352681696|ref|YP_004892220.1| - 2.6 8.5 7.1 71 3.9 7.1 2.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF3797 PF12677.7 gi|352681696|ref|YP_004892220.1| - 2.8 7.9 5.1 9.5 6.2 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) GTP_EFTU PF00009.27 gi|352681697|ref|YP_004892221.1| - 1.3e-58 197.8 0.0 1.8e-58 197.3 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|352681697|ref|YP_004892221.1| - 1.6e-29 102.1 0.0 4.8e-29 100.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|352681697|ref|YP_004892221.1| - 4.8e-24 84.2 0.1 9.7e-24 83.3 0.1 1.5 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|352681697|ref|YP_004892221.1| - 5.2e-20 71.3 0.0 1.8e-19 69.5 0.0 2.0 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|352681697|ref|YP_004892221.1| - 2.3e-16 60.0 0.2 5e-16 58.9 0.2 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|352681697|ref|YP_004892221.1| - 0.013 15.6 0.0 0.028 14.5 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase 3HCDH_N PF02737.18 gi|352681697|ref|YP_004892221.1| - 0.073 12.9 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Linocin_M18 PF04454.12 gi|352681698|ref|YP_004892222.1| - 8e-33 113.8 0.1 1.6e-32 112.8 0.0 1.6 2 0 0 2 2 2 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|352681698|ref|YP_004892222.1| - 4.7e-09 36.8 0.3 8.2e-09 36.0 0.3 1.4 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|352681698|ref|YP_004892222.1| - 0.0001 22.3 0.0 0.00016 21.6 0.0 1.4 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|352681698|ref|YP_004892222.1| - 0.0074 16.6 1.1 0.015 15.7 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) COQ7 PF03232.13 gi|352681698|ref|YP_004892222.1| - 0.089 12.6 0.1 0.16 11.7 0.1 1.4 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 DUF2960 PF11173.8 gi|352681698|ref|YP_004892222.1| - 0.11 12.9 0.0 8.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2960) DUF2202 PF09968.9 gi|352681698|ref|YP_004892222.1| - 0.13 12.1 0.1 0.23 11.3 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) GHMP_kinases_N PF00288.26 gi|352681700|ref|YP_004892224.1| - 7.5e-11 42.1 4.0 7.5e-11 42.1 4.0 2.5 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|352681700|ref|YP_004892224.1| - 8.6e-11 42.1 0.2 8.6e-11 42.1 0.2 2.1 3 0 0 3 3 3 1 GHMP kinases C terminal DUF4358 PF14270.6 gi|352681701|ref|YP_004892225.1| - 0.049 13.9 0.5 0.11 12.8 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4358) Med9 PF07544.13 gi|352681701|ref|YP_004892225.1| - 0.069 13.3 0.0 0.2 11.8 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF4477 PF14780.6 gi|352681701|ref|YP_004892225.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4477) Band_7_1 PF13421.6 gi|352681702|ref|YP_004892226.1| - 2.9e-12 46.7 0.0 3.2e-12 46.6 0.0 1.0 1 0 0 1 1 1 1 SPFH domain-Band 7 family PAC2 PF09754.9 gi|352681704|ref|YP_004892228.1| - 3.1e-36 125.4 0.5 4.4e-36 124.9 0.5 1.2 1 0 0 1 1 1 1 PAC2 family Peripla_BP_6 PF13458.6 gi|352681705|ref|YP_004892229.1| - 1.6e-50 172.8 8.9 2.3e-50 172.2 8.9 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|352681705|ref|YP_004892229.1| - 1.2e-15 57.5 0.5 2e-15 56.8 0.5 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|352681705|ref|YP_004892229.1| - 1.2e-15 57.3 1.4 5.9e-09 35.4 0.6 2.3 2 1 0 2 2 2 2 Periplasmic binding protein domain ABC_sub_bind PF04392.12 gi|352681705|ref|YP_004892229.1| - 0.0018 17.6 0.4 0.0029 16.9 0.4 1.3 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_4 PF13407.6 gi|352681705|ref|YP_004892229.1| - 0.012 15.2 0.8 1.2 8.7 0.0 2.6 3 0 0 3 3 3 0 Periplasmic binding protein domain SecD-TM1 PF13721.6 gi|352681705|ref|YP_004892229.1| - 0.26 11.8 1.8 0.96 9.9 0.2 2.5 3 0 0 3 3 3 0 SecD export protein N-terminal TM region BPD_transp_2 PF02653.16 gi|352681706|ref|YP_004892230.1| - 9.5e-33 113.5 44.9 1.2e-32 113.2 44.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|352681707|ref|YP_004892231.1| - 3.9e-32 111.5 43.2 4.8e-32 111.2 43.2 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|352681708|ref|YP_004892232.1| - 1.6e-27 96.7 0.0 2.1e-27 96.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681708|ref|YP_004892232.1| - 2e-07 31.1 0.3 0.00012 22.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|352681708|ref|YP_004892232.1| - 6.8e-06 25.9 0.4 1.4e-05 24.9 0.4 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter SMC_N PF02463.19 gi|352681708|ref|YP_004892232.1| - 1.5e-05 24.6 0.3 0.0049 16.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352681708|ref|YP_004892232.1| - 0.00012 21.7 0.0 0.00022 20.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|352681708|ref|YP_004892232.1| - 0.00024 21.4 0.1 0.11 12.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|352681708|ref|YP_004892232.1| - 0.00045 20.8 0.0 0.00067 20.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|352681708|ref|YP_004892232.1| - 0.00091 19.0 0.0 0.0079 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|352681708|ref|YP_004892232.1| - 0.0011 17.8 2.0 0.16 10.7 0.1 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|352681708|ref|YP_004892232.1| - 0.0012 19.2 0.0 0.0019 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|352681708|ref|YP_004892232.1| - 0.0015 18.3 0.1 0.0052 16.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|352681708|ref|YP_004892232.1| - 0.0038 16.5 0.1 0.081 12.1 0.0 2.1 2 0 0 2 2 2 1 NB-ARC domain T2SSE PF00437.20 gi|352681708|ref|YP_004892232.1| - 0.0068 15.5 0.2 0.042 12.9 0.0 2.0 2 0 0 2 2 2 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|352681708|ref|YP_004892232.1| - 0.01 15.7 0.0 0.013 15.4 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|352681708|ref|YP_004892232.1| - 0.011 15.8 0.0 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|352681708|ref|YP_004892232.1| - 0.012 15.2 0.1 0.21 11.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|352681708|ref|YP_004892232.1| - 0.035 14.0 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|352681708|ref|YP_004892232.1| - 0.044 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|352681708|ref|YP_004892232.1| - 0.045 13.5 0.1 2.3 7.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_27 PF13514.6 gi|352681708|ref|YP_004892232.1| - 0.053 13.1 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|352681708|ref|YP_004892232.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DLIC PF05783.11 gi|352681708|ref|YP_004892232.1| - 0.061 12.2 0.0 0.089 11.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) cobW PF02492.19 gi|352681708|ref|YP_004892232.1| - 0.063 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF3584 PF12128.8 gi|352681708|ref|YP_004892232.1| - 0.11 9.9 0.1 0.15 9.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MMR_HSR1 PF01926.23 gi|352681708|ref|YP_004892232.1| - 0.17 12.0 0.4 0.48 10.5 0.4 1.7 1 1 1 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|352681708|ref|YP_004892232.1| - 0.17 12.0 0.1 0.44 10.7 0.1 1.7 2 0 0 2 2 2 0 AAA domain FeoB_N PF02421.18 gi|352681708|ref|YP_004892232.1| - 0.31 10.6 1.3 0.93 9.0 0.1 2.0 2 0 0 2 2 2 0 Ferrous iron transport protein B ABC_tran PF00005.27 gi|352681709|ref|YP_004892233.1| - 1.1e-27 97.2 0.0 1.5e-27 96.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681709|ref|YP_004892233.1| - 5.3e-12 46.2 1.0 1.8e-06 28.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681709|ref|YP_004892233.1| - 9.4e-05 21.9 0.2 0.021 14.3 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|352681709|ref|YP_004892233.1| - 0.00027 21.5 0.3 0.00044 20.8 0.3 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352681709|ref|YP_004892233.1| - 0.00051 20.3 0.1 0.0026 18.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|352681709|ref|YP_004892233.1| - 0.00094 18.9 0.1 0.0025 17.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352681709|ref|YP_004892233.1| - 0.0021 17.8 0.1 0.0047 16.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|352681709|ref|YP_004892233.1| - 0.0025 17.6 0.0 0.013 15.3 0.1 1.8 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.22 gi|352681709|ref|YP_004892233.1| - 0.0028 17.3 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|352681709|ref|YP_004892233.1| - 0.0054 16.4 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352681709|ref|YP_004892233.1| - 0.012 16.1 0.0 0.025 15.0 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|352681709|ref|YP_004892233.1| - 0.012 16.0 0.1 0.11 12.9 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|352681709|ref|YP_004892233.1| - 0.015 15.6 0.1 0.05 13.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|352681709|ref|YP_004892233.1| - 0.019 15.1 0.1 0.48 10.6 0.1 2.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|352681709|ref|YP_004892233.1| - 0.036 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase Dynamin_N PF00350.23 gi|352681709|ref|YP_004892233.1| - 0.042 13.9 0.0 0.23 11.5 0.0 1.9 1 1 0 1 1 1 0 Dynamin family TrwB_AAD_bind PF10412.9 gi|352681709|ref|YP_004892233.1| - 0.044 12.7 0.0 0.078 11.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MukB PF04310.12 gi|352681709|ref|YP_004892233.1| - 0.058 13.2 0.0 0.092 12.5 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal SbcCD_C PF13558.6 gi|352681709|ref|YP_004892233.1| - 0.074 13.3 0.1 0.43 10.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit T2SSE PF00437.20 gi|352681709|ref|YP_004892233.1| - 0.1 11.7 0.3 0.21 10.6 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.12 gi|352681709|ref|YP_004892233.1| - 0.21 11.5 0.1 0.53 10.2 0.1 1.7 2 0 0 2 2 2 0 NACHT domain Trypsin_2 PF13365.6 gi|352681710|ref|YP_004892234.1| - 1.1e-24 88.0 1.0 1.7e-24 87.5 1.0 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|352681710|ref|YP_004892234.1| - 3.8e-10 39.9 0.0 6.9e-10 39.1 0.0 1.5 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|352681710|ref|YP_004892234.1| - 1.5e-08 34.8 0.0 5.3e-08 32.9 0.0 1.8 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|352681710|ref|YP_004892234.1| - 3.5e-08 33.2 0.1 7e-08 32.2 0.1 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|352681710|ref|YP_004892234.1| - 1.3e-06 28.6 0.0 3.4e-06 27.3 0.0 1.7 1 1 0 1 1 1 1 PDZ domain Peptidase_S29 PF02907.15 gi|352681710|ref|YP_004892234.1| - 0.0031 17.3 0.1 0.043 13.6 0.0 2.3 2 0 0 2 2 2 1 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.9 gi|352681710|ref|YP_004892234.1| - 0.03 13.0 0.2 0.03 13.0 0.2 1.5 2 0 0 2 2 2 0 Peptidase S46 Binary_toxB_3 PF17476.2 gi|352681710|ref|YP_004892234.1| - 0.057 13.6 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Clostridial binary toxin B/anthrax toxin PA domain 3 Peptidase_S7 PF00949.21 gi|352681710|ref|YP_004892234.1| - 0.12 12.2 0.1 0.23 11.3 0.1 1.5 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease DUF1838 PF08894.11 gi|352681710|ref|YP_004892234.1| - 0.16 11.6 0.0 0.25 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1838) Aldo_ket_red PF00248.21 gi|352681711|ref|YP_004892235.1| - 1.5e-45 155.7 0.0 2.1e-43 148.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family AIRS_C PF02769.22 gi|352681712|ref|YP_004892236.1| - 2.2e-19 70.1 0.1 3.6e-19 69.4 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|352681712|ref|YP_004892236.1| - 2e-14 54.0 2.3 8.7e-14 51.9 0.6 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Hom_end PF05204.14 gi|352681712|ref|YP_004892236.1| - 0.069 13.3 0.0 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 Homing endonuclease ZnuA PF01297.17 gi|352681713|ref|YP_004892237.1| - 8.6e-06 25.3 0.0 0.0004 19.9 0.0 2.0 1 1 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|352681714|ref|YP_004892238.1| - 1.9e-21 77.0 0.0 2.8e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681714|ref|YP_004892238.1| - 4.1e-10 40.0 0.1 0.00039 20.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|352681714|ref|YP_004892238.1| - 4.6e-06 27.3 0.1 7.5e-06 26.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352681714|ref|YP_004892238.1| - 2.3e-05 24.0 0.1 4e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|352681714|ref|YP_004892238.1| - 6e-05 23.3 0.0 0.00022 21.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|352681714|ref|YP_004892238.1| - 6.3e-05 22.5 0.1 0.014 14.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_27 PF13514.6 gi|352681714|ref|YP_004892238.1| - 8.1e-05 22.3 0.0 0.00014 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352681714|ref|YP_004892238.1| - 0.00044 20.7 1.5 0.00046 20.6 0.2 1.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|352681714|ref|YP_004892238.1| - 0.00046 20.4 0.0 0.0066 16.6 0.0 2.3 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|352681714|ref|YP_004892238.1| - 0.0036 16.2 0.9 0.2 10.4 0.4 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|352681714|ref|YP_004892238.1| - 0.0047 16.0 0.0 0.0082 15.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|352681714|ref|YP_004892238.1| - 0.005 16.8 0.1 0.011 15.6 0.0 1.6 2 0 0 2 2 2 1 NTPase Mg_chelatase PF01078.21 gi|352681714|ref|YP_004892238.1| - 0.0094 15.4 0.3 0.034 13.5 0.1 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|352681714|ref|YP_004892238.1| - 0.026 15.0 0.1 0.075 13.5 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|352681714|ref|YP_004892238.1| - 0.029 14.1 0.1 0.093 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Guanylate_kin PF00625.21 gi|352681714|ref|YP_004892238.1| - 0.036 13.7 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Guanylate kinase Rad17 PF03215.15 gi|352681714|ref|YP_004892238.1| - 0.073 13.0 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|352681714|ref|YP_004892238.1| - 0.097 12.4 0.2 5.6 6.7 0.1 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|352681714|ref|YP_004892238.1| - 0.12 11.6 0.0 0.26 10.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|352681714|ref|YP_004892238.1| - 0.17 11.9 0.7 4 7.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC-3 PF00950.17 gi|352681715|ref|YP_004892239.1| - 8.5e-21 74.6 28.8 1.1e-20 74.2 28.8 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|352681715|ref|YP_004892239.1| - 5.6e-07 28.9 26.8 5.6e-07 28.9 26.8 2.2 1 1 1 2 2 2 1 FecCD transport family Aconitase PF00330.20 gi|352681716|ref|YP_004892240.1| - 3.1e-168 560.6 0.0 3.9e-168 560.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|352681716|ref|YP_004892240.1| - 3.7e-37 127.6 0.0 6.1e-37 126.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain TIM PF00121.18 gi|352681717|ref|YP_004892241.1| - 1.8e-11 43.9 0.0 4.3e-11 42.6 0.0 1.6 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|352681717|ref|YP_004892241.1| - 1.8e-06 27.5 1.3 2.3e-06 27.1 0.3 1.7 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|352681717|ref|YP_004892241.1| - 0.00062 19.3 0.4 0.00062 19.3 0.4 1.8 2 0 0 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|352681717|ref|YP_004892241.1| - 0.00076 18.6 1.2 0.0062 15.6 0.3 2.4 2 1 1 3 3 3 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|352681717|ref|YP_004892241.1| - 0.0013 18.0 0.0 0.0034 16.6 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|352681717|ref|YP_004892241.1| - 0.0022 17.5 0.1 0.0075 15.7 0.0 1.9 2 0 0 2 2 2 1 Histidine biosynthesis protein Peripla_BP_6 PF13458.6 gi|352681717|ref|YP_004892241.1| - 0.0026 17.5 0.1 0.046 13.4 0.0 2.1 1 1 0 2 2 2 1 Periplasmic binding protein ATPgrasp_N PF18130.1 gi|352681717|ref|YP_004892241.1| - 0.033 14.7 1.8 8.3 7.1 0.0 3.6 3 1 0 3 3 3 0 ATP-grasp N-terminal domain QRPTase_C PF01729.19 gi|352681718|ref|YP_004892242.1| - 8.2e-20 71.2 0.0 1.1e-19 70.8 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|352681718|ref|YP_004892242.1| - 2.6e-05 24.2 0.0 6e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|352681718|ref|YP_004892242.1| - 0.0012 19.3 0.0 0.0021 18.5 0.0 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase_N PF17767.1 gi|352681718|ref|YP_004892242.1| - 0.0043 17.4 0.0 0.62 10.5 0.0 2.2 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Citrate_synt PF00285.21 gi|352681719|ref|YP_004892243.1| - 8.7e-119 396.8 0.0 1e-118 396.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain HTH_24 PF13412.6 gi|352681721|ref|YP_004892245.1| - 3.2e-06 26.6 0.0 5.7e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|352681721|ref|YP_004892245.1| - 0.00026 21.0 0.0 0.00045 20.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|352681721|ref|YP_004892245.1| - 0.00033 20.4 0.0 0.00055 19.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF977 PF06163.11 gi|352681721|ref|YP_004892245.1| - 0.016 15.1 0.0 0.024 14.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_AsnC-type PF13404.6 gi|352681721|ref|YP_004892245.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF4203 PF13886.6 gi|352681722|ref|YP_004892246.1| - 0.12 12.1 12.5 0.14 11.8 12.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) ALMT PF11744.8 gi|352681722|ref|YP_004892246.1| - 1 8.1 3.4 1.2 7.9 3.4 1.0 1 0 0 1 1 1 0 Aluminium activated malate transporter MoeA_N PF03453.17 gi|352681726|ref|YP_004892250.1| - 2.1e-44 151.1 1.3 3.2e-44 150.5 1.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|352681726|ref|YP_004892250.1| - 2.4e-25 88.9 0.0 4e-25 88.1 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|352681726|ref|YP_004892250.1| - 3.1e-16 59.3 0.1 1.2e-15 57.4 0.1 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) QueC PF06508.13 gi|352681727|ref|YP_004892251.1| - 7.6e-54 182.4 0.0 9.9e-54 182.0 0.0 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|352681727|ref|YP_004892251.1| - 9.5e-17 61.1 0.0 1.7e-16 60.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|352681727|ref|YP_004892251.1| - 4e-12 46.5 0.0 8.5e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|352681727|ref|YP_004892251.1| - 2.5e-05 24.0 0.0 0.00014 21.5 0.0 2.0 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|352681727|ref|YP_004892251.1| - 0.00066 18.6 0.0 0.0013 17.6 0.0 1.4 2 0 0 2 2 2 1 tRNA methyl transferase DUF3700 PF12481.8 gi|352681727|ref|YP_004892251.1| - 0.053 13.0 0.0 0.078 12.4 0.0 1.2 1 0 0 1 1 1 0 Aluminium induced protein ATP_bind_3 PF01171.20 gi|352681727|ref|YP_004892251.1| - 0.18 11.5 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 PP-loop family HTH_20 PF12840.7 gi|352681728|ref|YP_004892252.1| - 9.4e-05 22.4 0.0 0.00013 21.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|352681728|ref|YP_004892252.1| - 0.0006 19.3 0.0 0.00079 18.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|352681728|ref|YP_004892252.1| - 0.00071 19.4 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|352681728|ref|YP_004892252.1| - 0.032 14.6 0.0 0.042 14.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_29 PF13551.6 gi|352681728|ref|YP_004892252.1| - 0.036 14.1 0.1 0.046 13.8 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix DUF977 PF06163.11 gi|352681728|ref|YP_004892252.1| - 0.042 13.8 0.0 0.045 13.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_IclR PF09339.10 gi|352681728|ref|YP_004892252.1| - 0.042 13.6 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|352681728|ref|YP_004892252.1| - 0.077 13.1 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain NitrOD5 PF11537.8 gi|352681729|ref|YP_004892253.1| - 0.019 15.1 0.1 0.021 14.9 0.1 1.1 1 0 0 1 1 1 0 Nitrosopumilus output domain 5 RVT_3 PF13456.6 gi|352681730|ref|YP_004892254.1| - 2.9e-26 91.7 0.0 4.6e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|352681730|ref|YP_004892254.1| - 1.7e-10 41.2 0.0 2.5e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 RNase H PhageMin_Tail PF10145.9 gi|352681730|ref|YP_004892254.1| - 0.018 14.9 0.1 0.03 14.2 0.1 1.3 1 0 0 1 1 1 0 Phage-related minor tail protein Esterase PF00756.20 gi|352681731|ref|YP_004892255.1| - 1.9e-09 37.5 0.0 2.5e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Abhydrolase_1 PF00561.20 gi|352681731|ref|YP_004892255.1| - 2.4e-07 30.7 0.0 2.3e-05 24.2 0.1 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|352681731|ref|YP_004892255.1| - 4.6e-07 29.5 0.0 5.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|352681731|ref|YP_004892255.1| - 1.4e-06 27.8 0.0 8.4e-05 21.9 0.0 2.8 1 1 2 3 3 3 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|352681731|ref|YP_004892255.1| - 4.1e-06 27.6 0.9 0.0012 19.5 0.5 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family BAAT_C PF08840.11 gi|352681731|ref|YP_004892255.1| - 0.0096 15.9 0.0 0.027 14.4 0.0 1.7 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|352681731|ref|YP_004892255.1| - 0.018 14.6 0.0 0.094 12.3 0.0 2.0 1 1 0 1 1 1 0 Dienelactone hydrolase family PGAP1 PF07819.13 gi|352681731|ref|YP_004892255.1| - 0.024 14.4 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein FSH1 PF03959.13 gi|352681731|ref|YP_004892255.1| - 0.027 14.1 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Peptidase_S15 PF02129.18 gi|352681731|ref|YP_004892255.1| - 0.033 13.8 0.0 0.049 13.2 0.0 1.2 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.7 gi|352681731|ref|YP_004892255.1| - 0.06 13.1 0.0 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 Alpha/beta hydrolase family Lipase_3 PF01764.25 gi|352681731|ref|YP_004892255.1| - 0.1 12.5 0.1 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Lipase (class 3) Abhydrolase_2 PF02230.16 gi|352681731|ref|YP_004892255.1| - 0.18 11.5 0.0 9.9 5.9 0.0 2.3 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DUF2192 PF09958.9 gi|352681732|ref|YP_004892256.1| - 1.5e-71 240.5 3.6 1.8e-71 240.4 3.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_L16 PF00252.18 gi|352681733|ref|YP_004892257.1| - 8.5e-34 116.4 0.1 9.9e-34 116.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Dus PF01207.17 gi|352681733|ref|YP_004892257.1| - 0.029 13.5 0.0 0.042 12.9 0.0 1.3 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) OrfB_Zn_ribbon PF07282.11 gi|352681734|ref|YP_004892258.1| - 1.4e-11 44.1 0.1 3.2e-11 43.0 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|352681734|ref|YP_004892258.1| - 1.4e-05 24.9 0.4 2.3e-05 24.2 0.4 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|352681734|ref|YP_004892258.1| - 0.00077 19.1 4.0 0.0018 17.9 4.0 1.6 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|352681734|ref|YP_004892258.1| - 0.0013 18.4 1.0 0.0021 17.7 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|352681734|ref|YP_004892258.1| - 0.0019 18.2 0.6 0.0029 17.6 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|352681734|ref|YP_004892258.1| - 0.0038 17.2 0.4 0.0093 16.0 0.1 1.7 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_IS605 PF01385.19 gi|352681734|ref|YP_004892258.1| - 0.0039 17.4 1.0 0.0078 16.4 1.0 1.5 1 0 0 1 1 1 1 Probable transposase SUKH-3 PF14433.6 gi|352681734|ref|YP_004892258.1| - 0.0057 17.1 0.0 0.0072 16.8 0.0 1.1 1 0 0 1 1 1 1 SUKH-3 immunity protein NRDD PF13597.6 gi|352681734|ref|YP_004892258.1| - 0.015 14.2 0.0 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase TF_Zn_Ribbon PF08271.12 gi|352681734|ref|YP_004892258.1| - 0.022 14.3 0.4 0.77 9.3 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|352681734|ref|YP_004892258.1| - 0.026 14.5 0.8 0.042 13.8 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.22 gi|352681734|ref|YP_004892258.1| - 0.061 13.2 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Mss51 PF13824.6 gi|352681734|ref|YP_004892258.1| - 0.12 12.5 0.1 0.24 11.5 0.1 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.13 gi|352681734|ref|YP_004892258.1| - 0.17 11.6 3.1 0.33 10.7 3.1 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.10 gi|352681734|ref|YP_004892258.1| - 0.29 11.3 3.0 1.2 9.3 3.0 1.9 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Auto_anti-p27 PF06677.12 gi|352681734|ref|YP_004892258.1| - 0.29 11.3 1.4 0.49 10.6 1.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|352681734|ref|YP_004892258.1| - 0.34 10.4 5.4 5.8 6.5 5.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|352681734|ref|YP_004892258.1| - 0.54 10.4 4.2 2 8.6 4.2 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|352681734|ref|YP_004892258.1| - 0.56 10.1 4.8 4.6 7.2 0.2 2.4 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.6 gi|352681734|ref|YP_004892258.1| - 0.66 9.3 4.5 2.3 7.6 4.5 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger zf_UBZ PF18439.1 gi|352681734|ref|YP_004892258.1| - 0.88 9.2 2.4 0.86 9.2 0.2 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|352681734|ref|YP_004892258.1| - 1.9 8.6 4.6 11 6.1 0.0 2.9 2 2 1 3 3 3 0 CpXC protein Pox_A_type_inc PF04508.12 gi|352681734|ref|YP_004892258.1| - 7.3 6.6 11.5 0.093 12.6 2.2 2.7 2 1 0 2 2 1 0 Viral A-type inclusion protein repeat UPF0547 PF10571.9 gi|352681734|ref|YP_004892258.1| - 7.4 6.8 6.3 67 3.7 6.3 2.1 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 UBA PF00627.31 gi|352681735|ref|YP_004892259.1| - 0.0042 17.0 0.3 0.0075 16.2 0.3 1.5 1 0 0 1 1 1 1 UBA/TS-N domain NAC PF01849.18 gi|352681735|ref|YP_004892259.1| - 0.0049 16.8 0.0 0.0083 16.1 0.0 1.4 1 0 0 1 1 1 1 NAC domain HOIP-UBA PF16678.5 gi|352681735|ref|YP_004892259.1| - 0.0057 16.7 1.9 0.0086 16.1 1.9 1.4 1 1 0 1 1 1 1 HOIP UBA domain pair UBA_4 PF14555.6 gi|352681735|ref|YP_004892259.1| - 0.0087 15.9 0.0 0.021 14.6 0.1 1.6 2 0 0 2 2 2 1 UBA-like domain SPT6_acidic PF14632.6 gi|352681735|ref|YP_004892259.1| - 0.034 14.7 0.1 0.052 14.1 0.1 1.3 1 0 0 1 1 1 0 Acidic N-terminal SPT6 RNA_pol_Rpb5_C PF01191.19 gi|352681735|ref|YP_004892259.1| - 0.059 13.2 0.1 0.19 11.6 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain B5 PF03484.15 gi|352681735|ref|YP_004892259.1| - 0.096 13.0 0.0 0.2 12.0 0.0 1.8 1 1 0 1 1 1 0 tRNA synthetase B5 domain CinA_KH PF18146.1 gi|352681735|ref|YP_004892259.1| - 0.26 11.5 1.9 9.4 6.5 0.0 2.6 2 1 1 3 3 3 0 Damage-inducible protein CinA KH domain tRNA-synt_2c PF01411.19 gi|352681736|ref|YP_004892260.1| - 3e-122 408.9 0.0 3.8e-122 408.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|352681736|ref|YP_004892260.1| - 2.2e-13 50.0 0.2 4.9e-13 48.9 0.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|352681736|ref|YP_004892260.1| - 0.0049 16.2 0.1 0.0085 15.4 0.1 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit DUF5344 PF17279.2 gi|352681736|ref|YP_004892260.1| - 0.085 13.4 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5344) VIT1 PF01988.19 gi|352681736|ref|YP_004892260.1| - 0.094 12.6 0.1 0.17 11.7 0.1 1.3 1 0 0 1 1 1 0 VIT family DHHA1 PF02272.19 gi|352681737|ref|YP_004892261.1| - 0.00066 20.1 0.0 0.0017 18.8 0.0 1.7 2 0 0 2 2 2 1 DHHA1 domain HTH_22 PF13309.6 gi|352681737|ref|YP_004892261.1| - 0.1 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain Nudix_N_2 PF14803.6 gi|352681739|ref|YP_004892263.1| - 0.0017 18.3 0.9 0.89 9.5 0.1 2.2 2 0 0 2 2 2 2 Nudix N-terminal Auto_anti-p27 PF06677.12 gi|352681739|ref|YP_004892263.1| - 0.026 14.7 1.7 0.33 11.2 0.3 2.3 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|352681739|ref|YP_004892263.1| - 0.029 14.5 1.4 0.3 11.3 1.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|352681739|ref|YP_004892263.1| - 0.041 13.8 1.5 5 7.1 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) STT3 PF02516.14 gi|352681740|ref|YP_004892264.1| - 8.1e-25 87.7 44.9 1.2e-23 83.8 44.9 2.2 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit ENOD93 PF03386.14 gi|352681740|ref|YP_004892264.1| - 8.1 6.4 11.8 16 5.5 2.5 2.9 2 0 0 2 2 2 0 Early nodulin 93 ENOD93 protein EIF_2_alpha PF07541.12 gi|352681741|ref|YP_004892265.1| - 1.1e-18 67.4 0.1 3.5e-18 65.8 0.0 1.8 1 1 1 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|352681741|ref|YP_004892265.1| - 6.7e-06 26.4 2.1 1.1e-05 25.6 0.2 2.1 2 0 0 2 2 2 1 S1 RNA binding domain CEP209_CC5 PF16574.5 gi|352681741|ref|YP_004892265.1| - 0.019 15.2 0.4 0.038 14.2 0.4 1.5 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 mRNA_cap_enzyme PF01331.19 gi|352681741|ref|YP_004892265.1| - 0.031 14.1 0.1 0.051 13.4 0.1 1.3 1 0 0 1 1 1 0 mRNA capping enzyme, catalytic domain Baseplate_J PF04865.14 gi|352681741|ref|YP_004892265.1| - 0.065 12.4 0.2 1.1 8.3 0.1 2.0 2 0 0 2 2 2 0 Baseplate J-like protein Nop10p PF04135.12 gi|352681742|ref|YP_004892266.1| - 4.4e-15 55.5 0.8 5.8e-15 55.1 0.8 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family Ribosomal_L32p PF01783.23 gi|352681742|ref|YP_004892266.1| - 0.0002 21.6 0.3 0.00035 20.7 0.3 1.5 1 0 0 1 1 1 1 Ribosomal L32p protein family DUF35_N PF12172.8 gi|352681742|ref|YP_004892266.1| - 0.0003 20.6 1.6 0.00051 19.9 1.6 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.19 gi|352681742|ref|YP_004892266.1| - 0.02 15.0 0.6 0.031 14.4 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-TFIIB PF13453.6 gi|352681742|ref|YP_004892266.1| - 0.031 13.6 6.2 0.042 13.2 1.1 2.2 1 1 0 2 2 2 0 Transcription factor zinc-finger DUF1272 PF06906.11 gi|352681742|ref|YP_004892266.1| - 0.049 13.7 0.8 0.076 13.1 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) PolC_DP2 PF03833.13 gi|352681742|ref|YP_004892266.1| - 0.057 11.3 0.1 0.054 11.4 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ACC PF17848.1 gi|352681742|ref|YP_004892266.1| - 0.067 13.3 5.6 1.2 9.2 5.7 2.3 1 1 1 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|352681742|ref|YP_004892266.1| - 0.12 12.4 1.5 0.14 12.2 1.3 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|352681742|ref|YP_004892266.1| - 0.15 12.0 5.1 0.29 11.1 5.1 1.4 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|352681742|ref|YP_004892266.1| - 0.31 11.0 3.6 7.1 6.7 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|352681742|ref|YP_004892266.1| - 0.34 11.1 2.8 0.51 10.5 2.8 1.7 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|352681742|ref|YP_004892266.1| - 0.35 10.4 4.5 1.1 8.8 4.5 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|352681742|ref|YP_004892266.1| - 0.49 10.8 4.7 0.69 10.4 0.2 2.6 1 1 2 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|352681742|ref|YP_004892266.1| - 0.5 10.5 4.6 6.7 6.9 0.1 2.2 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|352681742|ref|YP_004892266.1| - 0.54 9.8 4.4 4.1 7.0 4.4 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|352681742|ref|YP_004892266.1| - 4 7.3 9.3 11 5.8 0.5 2.7 3 0 0 3 3 3 0 zinc-ribbon domain NAD_binding_2 PF03446.15 gi|352681743|ref|YP_004892267.1| - 6.3e-33 114.2 0.5 9.7e-33 113.6 0.5 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|352681743|ref|YP_004892267.1| - 1.1e-30 106.3 0.0 1.8e-30 105.7 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|352681743|ref|YP_004892267.1| - 2.5e-09 37.6 0.1 2.2e-08 34.6 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|352681743|ref|YP_004892267.1| - 2e-06 27.9 0.1 3.5e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|352681743|ref|YP_004892267.1| - 8.2e-05 22.0 0.0 0.00013 21.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|352681743|ref|YP_004892267.1| - 0.0016 18.4 0.0 0.0027 17.6 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|352681743|ref|YP_004892267.1| - 0.0024 16.9 0.0 0.0031 16.5 0.0 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.22 gi|352681743|ref|YP_004892267.1| - 0.014 16.2 0.0 0.024 15.4 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.12 gi|352681743|ref|YP_004892267.1| - 0.019 14.6 0.0 0.033 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Sacchrp_dh_NADP PF03435.18 gi|352681743|ref|YP_004892267.1| - 0.05 13.8 0.0 0.17 12.1 0.0 2.0 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Prot_ATP_ID_OB PF16450.5 gi|352681743|ref|YP_004892267.1| - 0.073 13.0 0.1 0.17 11.9 0.1 1.6 1 0 0 1 1 1 0 Proteasomal ATPase OB C-terminal domain ApbA PF02558.16 gi|352681743|ref|YP_004892267.1| - 0.083 12.5 0.0 0.19 11.3 0.0 1.6 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA bact-PGI_C PF10432.9 gi|352681743|ref|YP_004892267.1| - 0.12 12.4 0.0 0.66 10.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial phospho-glucose isomerase C-terminal SIS domain UDPG_MGDP_dh_N PF03721.14 gi|352681743|ref|YP_004892267.1| - 0.15 11.6 0.3 7.9 6.0 0.0 2.4 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HAD_2 PF13419.6 gi|352681744|ref|YP_004892268.1| - 1.2e-19 71.1 0.0 1.6e-19 70.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|352681744|ref|YP_004892268.1| - 5.1e-11 42.5 0.0 8.4e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|352681744|ref|YP_004892268.1| - 9.8e-10 39.1 0.1 9e-09 35.9 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase MREG PF15812.5 gi|352681744|ref|YP_004892268.1| - 0.00067 20.0 0.0 0.00096 19.5 0.0 1.2 1 0 0 1 1 1 1 Melanoregulin HAD PF12710.7 gi|352681744|ref|YP_004892268.1| - 0.0033 17.9 1.7 0.0087 16.5 1.5 1.8 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|352681746|ref|YP_004892270.1| - 1.1e-06 29.1 0.0 1.6e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|352681746|ref|YP_004892270.1| - 1.4 8.6 5.8 12 5.5 5.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) ATPase PF06745.13 gi|352681747|ref|YP_004892271.1| - 1.2e-13 50.9 0.1 9.9e-12 44.7 0.1 2.5 1 1 0 1 1 1 1 KaiC GvpD PF07088.11 gi|352681747|ref|YP_004892271.1| - 5.6e-08 31.8 0.1 0.0016 17.2 0.0 2.4 2 1 1 3 3 3 2 GvpD gas vesicle protein AAA_25 PF13481.6 gi|352681747|ref|YP_004892271.1| - 8.5e-07 28.7 0.1 2.3e-06 27.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|352681747|ref|YP_004892271.1| - 1e-06 29.2 0.0 2.4e-05 24.8 0.0 2.6 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|352681747|ref|YP_004892271.1| - 5.6e-06 26.7 0.1 0.00031 21.0 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|352681747|ref|YP_004892271.1| - 1.3e-05 25.0 0.0 3.1e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|352681747|ref|YP_004892271.1| - 0.00043 20.2 0.0 0.0023 17.8 0.0 2.0 2 0 0 2 2 2 1 NACHT domain Glyco_transf_4 PF13439.6 gi|352681747|ref|YP_004892271.1| - 0.00047 20.2 0.0 0.00096 19.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DnaB_C PF03796.15 gi|352681747|ref|YP_004892271.1| - 0.00061 19.2 0.0 0.0025 17.2 0.0 1.9 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain ATPase_2 PF01637.18 gi|352681747|ref|YP_004892271.1| - 0.00087 19.3 0.0 0.0078 16.2 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|352681747|ref|YP_004892271.1| - 0.0015 18.9 0.0 0.012 16.0 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|352681747|ref|YP_004892271.1| - 0.0016 18.5 0.0 0.007 16.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|352681747|ref|YP_004892271.1| - 0.0021 17.8 0.1 0.011 15.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|352681747|ref|YP_004892271.1| - 0.0044 16.8 0.1 0.017 14.9 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein SRP54 PF00448.22 gi|352681747|ref|YP_004892271.1| - 0.0055 16.4 0.0 0.25 11.0 0.0 2.3 2 1 0 2 2 2 1 SRP54-type protein, GTPase domain Glyco_trans_4_2 PF13477.6 gi|352681747|ref|YP_004892271.1| - 0.0084 16.1 0.0 0.85 9.6 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like RuvB_N PF05496.12 gi|352681747|ref|YP_004892271.1| - 0.016 15.0 0.1 0.19 11.5 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|352681747|ref|YP_004892271.1| - 0.032 14.8 0.0 0.19 12.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|352681747|ref|YP_004892271.1| - 0.049 13.4 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|352681747|ref|YP_004892271.1| - 0.05 12.8 0.0 0.073 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|352681747|ref|YP_004892271.1| - 0.053 13.5 0.0 0.099 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|352681747|ref|YP_004892271.1| - 0.054 13.9 0.0 0.23 11.9 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_23 PF13476.6 gi|352681747|ref|YP_004892271.1| - 0.064 13.7 0.2 0.11 13.0 0.2 1.3 1 0 0 1 1 1 0 AAA domain CobA_CobO_BtuR PF02572.15 gi|352681747|ref|YP_004892271.1| - 0.072 13.3 0.1 0.26 11.5 0.1 1.9 2 1 0 2 2 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_13 PF13166.6 gi|352681747|ref|YP_004892271.1| - 0.081 11.6 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|352681747|ref|YP_004892271.1| - 0.081 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PhoH PF02562.16 gi|352681747|ref|YP_004892271.1| - 0.11 11.9 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein CLP1_P PF16575.5 gi|352681747|ref|YP_004892271.1| - 0.16 11.7 0.0 9.4 6.0 0.0 2.6 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|352681747|ref|YP_004892271.1| - 0.19 11.8 0.1 14 5.7 0.0 2.3 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|352681747|ref|YP_004892271.1| - 0.19 11.0 0.0 0.63 9.3 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin Nre_N PF04894.12 gi|352681748|ref|YP_004892272.1| - 9.3e-97 324.1 0.0 1.1e-96 323.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|352681748|ref|YP_004892272.1| - 6.1e-36 122.7 0.0 9.1e-36 122.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal PDT PF00800.18 gi|352681749|ref|YP_004892273.1| - 4.1e-32 111.5 0.0 5.2e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|352681749|ref|YP_004892273.1| - 6.4e-09 35.4 0.0 1.3e-08 34.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain DEAD PF00270.29 gi|352681751|ref|YP_004892275.1| - 5.2e-21 75.2 0.0 1.6e-20 73.6 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|352681751|ref|YP_004892275.1| - 3.4e-14 53.2 3.1 5.5e-14 52.5 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|352681751|ref|YP_004892275.1| - 2.9e-09 37.3 0.0 3.5e-08 33.8 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|352681751|ref|YP_004892275.1| - 4.1e-07 30.2 0.0 7.9e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|352681751|ref|YP_004892275.1| - 5.7e-06 26.1 0.0 2.5e-05 24.0 0.0 2.2 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.7 gi|352681751|ref|YP_004892275.1| - 1e-05 25.5 0.1 7.4e-05 22.8 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.23 gi|352681751|ref|YP_004892275.1| - 0.0012 17.6 0.0 0.0018 17.0 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain HHH PF00633.23 gi|352681751|ref|YP_004892275.1| - 0.014 15.2 0.1 9.5 6.3 0.1 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.15 gi|352681751|ref|YP_004892275.1| - 0.053 13.3 0.0 0.55 10.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain AAA_25 PF13481.6 gi|352681751|ref|YP_004892275.1| - 0.088 12.4 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain HHH_3 PF12836.7 gi|352681751|ref|YP_004892275.1| - 0.12 12.7 0.0 0.39 11.0 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif ATPase PF06745.13 gi|352681751|ref|YP_004892275.1| - 0.18 11.1 0.0 0.41 10.0 0.0 1.5 1 0 0 1 1 1 0 KaiC zf-Mss51 PF13824.6 gi|352681752|ref|YP_004892276.1| - 0.0016 18.5 1.1 0.27 11.4 0.1 2.2 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 DNA_RNApol_7kD PF03604.13 gi|352681752|ref|YP_004892276.1| - 0.0056 16.3 1.8 0.014 15.1 1.8 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.22 gi|352681752|ref|YP_004892276.1| - 0.01 15.7 0.2 0.015 15.2 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 gi|352681752|ref|YP_004892276.1| - 0.015 14.9 0.5 0.58 9.8 0.0 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Lar_restr_allev PF14354.6 gi|352681752|ref|YP_004892276.1| - 0.015 15.7 0.1 0.018 15.4 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar GFA PF04828.14 gi|352681752|ref|YP_004892276.1| - 0.017 15.5 0.8 3.6 8.0 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-NADH-PPase PF09297.11 gi|352681752|ref|YP_004892276.1| - 0.025 14.2 1.9 0.056 13.1 1.9 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|352681752|ref|YP_004892276.1| - 0.026 15.0 0.7 0.047 14.2 0.6 1.5 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DUF2688 PF10892.8 gi|352681752|ref|YP_004892276.1| - 0.03 13.8 0.9 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) Zn_ribbon_SprT PF17283.2 gi|352681752|ref|YP_004892276.1| - 0.034 14.0 0.7 0.18 11.7 0.1 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain HalOD2 PF18547.1 gi|352681752|ref|YP_004892276.1| - 0.058 13.3 2.5 2.2 8.3 0.1 2.5 1 1 2 3 3 3 0 Halobacterial output domain 2 Elf1 PF05129.13 gi|352681752|ref|YP_004892276.1| - 0.061 13.4 0.0 0.088 12.9 0.0 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|352681752|ref|YP_004892276.1| - 0.069 12.6 0.7 4.8 6.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbon_6 PF10005.9 gi|352681752|ref|YP_004892276.1| - 0.076 13.7 0.2 4.9 7.9 0.0 1.8 1 1 1 2 2 2 0 zinc-ribbon domain zf-trcl PF13451.6 gi|352681752|ref|YP_004892276.1| - 0.085 12.8 0.2 2.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|352681752|ref|YP_004892276.1| - 0.15 11.6 1.2 0.28 10.8 1.2 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding zf-CSL PF05207.13 gi|352681752|ref|YP_004892276.1| - 0.39 10.5 2.9 1.1 9.0 2.9 1.7 1 1 0 1 1 1 0 CSL zinc finger Rubredoxin_2 PF18073.1 gi|352681752|ref|YP_004892276.1| - 1.6 8.5 5.4 6.9 6.5 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain CBS PF00571.28 gi|352681753|ref|YP_004892277.1| - 1.6e-25 89.3 1.4 1.4e-12 47.9 0.0 2.1 2 0 0 2 2 2 2 CBS domain TmoB PF06234.12 gi|352681753|ref|YP_004892277.1| - 0.00071 19.6 2.0 0.45 10.6 0.5 2.1 1 1 1 2 2 2 2 Toluene-4-monooxygenase system protein B (TmoB) Sld5 PF05916.11 gi|352681754|ref|YP_004892278.1| - 1.2e-09 38.5 0.3 1.5e-09 38.3 0.3 1.1 1 0 0 1 1 1 1 GINS complex protein Adenylsucc_synt PF00709.21 gi|352681755|ref|YP_004892279.1| - 1.6e-67 228.3 0.0 2.1e-35 122.5 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Pyr_redox_2 PF07992.14 gi|352681756|ref|YP_004892280.1| - 3.4e-14 52.8 0.6 1.6e-06 27.6 0.1 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|352681756|ref|YP_004892280.1| - 4.9e-10 38.7 0.4 3.4e-05 22.7 0.4 2.2 2 0 0 2 2 2 2 HI0933-like protein GIDA PF01134.22 gi|352681756|ref|YP_004892280.1| - 3.7e-09 36.1 0.8 0.001 18.3 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A DAO PF01266.24 gi|352681756|ref|YP_004892280.1| - 3.2e-08 33.5 6.1 1.2e-05 25.1 1.4 2.7 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|352681756|ref|YP_004892280.1| - 3.6e-08 33.0 0.5 0.0093 15.2 0.8 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|352681756|ref|YP_004892280.1| - 2.2e-07 30.4 0.1 3.8e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|352681756|ref|YP_004892280.1| - 7.7e-06 25.2 1.7 7.7e-06 25.2 1.7 2.5 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|352681756|ref|YP_004892280.1| - 3.4e-05 24.0 0.1 0.0001 22.5 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|352681756|ref|YP_004892280.1| - 0.0001 21.7 0.5 0.00016 21.0 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|352681756|ref|YP_004892280.1| - 0.00066 18.8 0.7 0.001 18.2 0.7 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|352681756|ref|YP_004892280.1| - 0.0044 17.5 1.7 1.6 9.4 0.0 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|352681756|ref|YP_004892280.1| - 0.013 14.9 0.6 0.036 13.4 0.6 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|352681756|ref|YP_004892280.1| - 0.037 14.0 0.3 0.52 10.3 0.2 2.2 2 0 0 2 2 2 0 FAD-NAD(P)-binding ThiF PF00899.21 gi|352681756|ref|YP_004892280.1| - 0.16 11.3 0.3 0.27 10.5 0.3 1.3 1 0 0 1 1 1 0 ThiF family Trp_halogenase PF04820.14 gi|352681756|ref|YP_004892280.1| - 0.19 10.6 0.7 0.28 10.0 0.7 1.2 1 0 0 1 1 1 0 Tryptophan halogenase DUF1286 PF06939.11 gi|352681757|ref|YP_004892281.1| - 2.1e-18 66.6 0.1 3.7e-18 65.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1286) YdjM PF04307.14 gi|352681757|ref|YP_004892281.1| - 9.7e-05 21.7 7.9 0.0029 16.9 7.9 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase eRF1_1 PF03463.15 gi|352681758|ref|YP_004892282.1| - 2.4e-19 69.6 0.0 3.9e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|352681758|ref|YP_004892282.1| - 1.9e-09 38.0 0.2 8.4e-09 35.9 0.2 2.1 1 1 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|352681758|ref|YP_004892282.1| - 0.027 14.7 1.4 0.33 11.2 0.1 2.8 2 1 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Baculo_VP1054 PF05789.11 gi|352681758|ref|YP_004892282.1| - 0.1 11.8 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Baculovirus VP1054 protein DUF2776 PF10951.8 gi|352681759|ref|YP_004892283.1| - 0.0035 16.7 0.5 0.0035 16.6 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2776) DHDPS PF00701.22 gi|352681760|ref|YP_004892284.1| - 2.8e-55 187.1 0.0 3.6e-55 186.7 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family TPR_12 PF13424.6 gi|352681760|ref|YP_004892284.1| - 0.2 12.0 0.0 3.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat ACT_6 PF13740.6 gi|352681761|ref|YP_004892285.1| - 3e-19 68.8 2.1 3.3e-19 68.6 2.1 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|352681761|ref|YP_004892285.1| - 6.7e-12 45.0 2.9 8.8e-12 44.6 2.9 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|352681761|ref|YP_004892285.1| - 1.4e-05 25.5 2.2 2e-05 25.1 2.2 1.3 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|352681761|ref|YP_004892285.1| - 0.00027 20.7 0.9 0.00043 20.0 0.9 1.4 1 0 0 1 1 1 1 ACT domain DUF711 PF05167.12 gi|352681762|ref|YP_004892286.1| - 2.7e-136 454.7 0.7 3.2e-136 454.5 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) DUF1297 PF06973.12 gi|352681763|ref|YP_004892287.1| - 4.6e-80 267.6 0.0 5.6e-80 267.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|352681763|ref|YP_004892287.1| - 3.6e-44 149.6 0.0 5.1e-44 149.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF1297 PF06973.12 gi|352681764|ref|YP_004892288.1| - 5.1e-53 179.4 0.2 1.3e-52 178.1 0.2 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|352681764|ref|YP_004892288.1| - 3.8e-37 127.0 0.0 5.8e-37 126.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|352681764|ref|YP_004892288.1| - 0.00054 20.0 0.0 0.001 19.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|352681764|ref|YP_004892288.1| - 0.0073 15.9 0.0 0.019 14.6 0.0 1.6 1 1 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 gi|352681764|ref|YP_004892288.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Lactamase_B PF00753.27 gi|352681765|ref|YP_004892289.1| - 4.3e-14 53.0 3.3 8.8e-14 52.0 3.3 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PDZ_6 PF17820.1 gi|352681765|ref|YP_004892289.1| - 0.002 17.9 0.2 0.078 12.8 0.0 2.6 2 0 0 2 2 2 1 PDZ domain Lactamase_B_2 PF12706.7 gi|352681765|ref|YP_004892289.1| - 0.012 15.1 0.2 0.02 14.4 0.2 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Abhydrolase_4 PF08386.10 gi|352681765|ref|YP_004892289.1| - 0.16 12.1 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein DUF359 PF04019.12 gi|352681767|ref|YP_004892291.1| - 6.1e-29 100.2 0.0 7.3e-29 100.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) FemAB_like PF04339.12 gi|352681767|ref|YP_004892291.1| - 0.046 12.8 0.0 0.059 12.5 0.0 1.1 1 0 0 1 1 1 0 Peptidogalycan biosysnthesis/recognition Lactamase_B_2 PF12706.7 gi|352681768|ref|YP_004892292.1| - 3e-22 79.1 0.3 3.6e-22 78.9 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|352681768|ref|YP_004892292.1| - 1.2e-06 28.7 1.9 1.4e-05 25.2 1.9 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|352681768|ref|YP_004892292.1| - 0.00018 21.4 0.1 0.00083 19.3 0.1 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DHDPS PF00701.22 gi|352681768|ref|YP_004892292.1| - 0.059 12.1 0.0 0.09 11.5 0.0 1.2 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family NAD_binding_10 PF13460.6 gi|352681768|ref|YP_004892292.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding DUF1743 PF08489.11 gi|352681769|ref|YP_004892293.1| - 6.8e-30 103.5 0.0 1.1e-29 102.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Zn-ribbon_8 PF09723.10 gi|352681769|ref|YP_004892293.1| - 0.069 13.3 0.3 12 6.1 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|352681769|ref|YP_004892293.1| - 0.072 13.0 2.5 2.7 8.0 0.0 2.6 1 1 1 2 2 2 0 SprT-like zinc ribbon domain zf_Rg PF17915.1 gi|352681769|ref|YP_004892293.1| - 0.36 10.3 4.9 0.75 9.3 4.9 1.4 1 0 0 1 1 1 0 Reverse gyrase zinc finger DZR PF12773.7 gi|352681769|ref|YP_004892293.1| - 0.37 10.9 1.7 0.38 10.8 0.4 1.6 2 0 0 2 2 2 0 Double zinc ribbon DUF35_N PF12172.8 gi|352681769|ref|YP_004892293.1| - 0.49 10.3 8.3 2 8.3 3.1 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|352681769|ref|YP_004892293.1| - 0.53 10.0 5.5 1.1 9.0 5.5 1.6 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352681769|ref|YP_004892293.1| - 0.54 10.3 5.6 2.1 8.4 5.7 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|352681769|ref|YP_004892293.1| - 0.85 9.8 4.8 1.5 9.0 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 BPD_transp_1 PF00528.22 gi|352681770|ref|YP_004892294.1| - 5.3e-21 75.2 66.9 9.8e-13 48.2 29.2 3.8 1 1 3 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|352681771|ref|YP_004892295.1| - 1.5e-13 51.4 11.3 9.2e-13 48.8 8.1 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|352681771|ref|YP_004892295.1| - 1.3e-08 35.0 2.4 3.6e-08 33.6 2.4 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|352681771|ref|YP_004892295.1| - 0.034 13.9 1.9 0.07 12.9 1.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Wzz PF02706.15 gi|352681771|ref|YP_004892295.1| - 0.066 13.5 1.5 0.18 12.1 0.6 2.3 2 0 0 2 2 2 0 Chain length determinant protein Hydrolase_3 PF08282.12 gi|352681772|ref|YP_004892296.1| - 3e-08 33.7 0.0 0.0017 18.2 0.1 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|352681772|ref|YP_004892296.1| - 0.00084 18.9 0.0 0.011 15.3 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|352681772|ref|YP_004892296.1| - 0.0015 18.9 0.1 0.048 13.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|352681772|ref|YP_004892296.1| - 0.0024 17.1 0.0 0.0082 15.3 0.0 1.7 1 1 0 1 1 1 1 Trehalose-phosphatase HAD PF12710.7 gi|352681772|ref|YP_004892296.1| - 0.0033 17.9 0.1 0.47 10.8 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|352681772|ref|YP_004892296.1| - 0.17 12.0 0.5 10 6.2 0.0 2.6 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase FAA_hydrolase PF01557.18 gi|352681773|ref|YP_004892297.1| - 1.6e-68 230.6 0.0 2.1e-68 230.2 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family AAA_assoc_C PF09821.9 gi|352681776|ref|YP_004892300.1| - 8.9e-06 26.2 0.1 1.4e-05 25.6 0.1 1.4 1 0 0 1 1 1 1 C-terminal AAA-associated domain HTH_53 PF18606.1 gi|352681776|ref|YP_004892300.1| - 0.0061 16.2 0.1 0.049 13.3 0.0 1.9 2 0 0 2 2 2 1 Zap helix turn helix N-terminal domain HTH_45 PF14947.6 gi|352681776|ref|YP_004892300.1| - 0.065 13.2 0.1 0.073 13.1 0.1 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix Complex1_49kDa PF00346.19 gi|352681777|ref|YP_004892301.1| - 6.5e-73 245.1 0.0 8e-73 244.9 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DUF4716 PF15837.5 gi|352681777|ref|YP_004892301.1| - 0.051 13.6 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4716) NADHdh PF00146.21 gi|352681778|ref|YP_004892302.1| - 2.7e-66 223.9 22.7 3.1e-66 223.7 22.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|352681779|ref|YP_004892303.1| - 4.6e-15 54.7 11.5 6e-08 32.2 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352681779|ref|YP_004892303.1| - 5.6e-11 43.2 4.3 2.6e-05 25.1 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|352681779|ref|YP_004892303.1| - 6.8e-11 42.6 22.9 4.9e-09 36.6 12.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352681779|ref|YP_004892303.1| - 3.5e-09 36.3 13.8 2.4e-05 24.2 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352681779|ref|YP_004892303.1| - 6.6e-09 35.8 20.7 1.1e-06 28.7 12.0 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352681779|ref|YP_004892303.1| - 1.2e-08 35.4 2.2 0.00091 19.7 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352681779|ref|YP_004892303.1| - 1.3e-08 34.5 12.7 0.00045 20.1 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681779|ref|YP_004892303.1| - 2.5e-08 33.9 6.1 6.5e-05 23.0 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352681779|ref|YP_004892303.1| - 3.3e-08 33.6 10.1 9.7e-08 32.1 10.5 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352681779|ref|YP_004892303.1| - 7.9e-08 32.6 2.4 0.0088 16.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681779|ref|YP_004892303.1| - 5.9e-05 23.3 11.4 0.049 14.2 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|352681779|ref|YP_004892303.1| - 0.0012 19.4 10.4 0.12 12.9 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|352681779|ref|YP_004892303.1| - 0.0019 18.0 1.6 0.47 10.2 0.1 2.2 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|352681779|ref|YP_004892303.1| - 0.003 18.4 16.9 0.18 12.8 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|352681779|ref|YP_004892303.1| - 0.0044 17.7 5.6 0.25 12.1 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|352681779|ref|YP_004892303.1| - 0.0061 16.7 11.0 0.077 13.2 0.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|352681779|ref|YP_004892303.1| - 0.018 15.9 5.7 1.1 10.1 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.20 gi|352681780|ref|YP_004892304.1| - 5.8e-06 26.1 16.1 5.8e-06 26.1 16.1 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HTH_10 PF04967.12 gi|352681780|ref|YP_004892304.1| - 0.092 12.6 1.9 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain DUF4713 PF15831.5 gi|352681780|ref|YP_004892304.1| - 0.27 11.7 4.1 0.86 10.1 4.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4713) RAMP4 PF06624.12 gi|352681780|ref|YP_004892304.1| - 0.44 10.7 1.4 0.78 9.8 1.4 1.4 1 0 0 1 1 1 0 Ribosome associated membrane protein RAMP4 SLATT_4 PF18186.1 gi|352681780|ref|YP_004892304.1| - 1.7 8.2 4.2 7 6.3 0.2 2.2 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 4 DUF4131 PF13567.6 gi|352681780|ref|YP_004892304.1| - 2.1 7.9 14.9 0.4 10.3 0.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Viral_Beta_CD PF04530.12 gi|352681780|ref|YP_004892304.1| - 9.7 6.5 7.9 1.9 8.8 0.3 2.4 1 1 1 2 2 2 0 Viral Beta C/D like family Oxidored_q2 PF00420.24 gi|352681781|ref|YP_004892305.1| - 6.3e-09 35.4 7.8 1.3e-08 34.4 7.8 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BphX PF06139.12 gi|352681781|ref|YP_004892305.1| - 0.037 14.0 8.9 0.055 13.4 8.9 1.2 1 0 0 1 1 1 0 BphX-like Holin_BlyA PF05102.12 gi|352681781|ref|YP_004892305.1| - 0.28 11.2 1.1 0.57 10.2 0.9 1.7 1 1 0 1 1 1 0 holin, BlyA family BCLP PF12304.8 gi|352681781|ref|YP_004892305.1| - 1.3 8.5 6.0 1.6 8.3 6.0 1.2 1 0 0 1 1 1 0 Beta-casein like protein Proton_antipo_M PF00361.20 gi|352681782|ref|YP_004892306.1| - 2.6e-45 154.9 33.7 2.6e-45 154.9 33.7 2.4 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|352681782|ref|YP_004892306.1| - 0.00025 21.1 0.4 0.00025 21.1 0.4 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|352681783|ref|YP_004892307.1| - 2.1e-41 142.0 31.5 1.9e-39 135.7 22.5 3.3 3 0 0 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|352681783|ref|YP_004892307.1| - 6.5e-07 29.3 5.1 2.5e-06 27.5 3.8 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|352681783|ref|YP_004892307.1| - 0.00058 19.5 0.0 0.00058 19.5 0.0 3.0 4 0 0 4 4 4 1 NADH dehydrogenase subunit 5 C-terminus Sdh_cyt PF01127.22 gi|352681783|ref|YP_004892307.1| - 0.0017 18.4 1.0 0.0017 18.4 1.0 4.7 3 2 2 5 5 5 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FixQ PF05545.11 gi|352681783|ref|YP_004892307.1| - 0.098 12.6 0.4 0.098 12.6 0.4 4.5 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ MotB_plug PF13677.6 gi|352681783|ref|YP_004892307.1| - 0.66 9.6 4.6 5.1 6.8 0.2 3.4 3 0 0 3 3 3 0 Membrane MotB of proton-channel complex MotA/MotB Proton_antipo_M PF00361.20 gi|352681784|ref|YP_004892308.1| - 8.8e-14 51.4 27.3 8.8e-14 51.4 27.3 3.4 2 2 0 2 2 2 1 Proton-conducting membrane transporter NDK PF00334.19 gi|352681785|ref|YP_004892309.1| - 3.7e-45 153.2 0.0 3.1e-24 85.5 0.0 2.1 2 0 0 2 2 2 2 Nucleoside diphosphate kinase AMP-binding PF00501.28 gi|352681786|ref|YP_004892310.1| - 8e-71 238.8 0.0 1.1e-70 238.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|352681786|ref|YP_004892310.1| - 8.4e-22 77.9 0.5 2.5e-21 76.4 0.5 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|352681786|ref|YP_004892310.1| - 4.3e-11 42.5 0.4 4.3e-11 42.5 0.4 1.9 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus Tautomerase PF01361.21 gi|352681786|ref|YP_004892310.1| - 0.13 12.2 0.0 0.54 10.2 0.0 2.0 2 0 0 2 2 2 0 Tautomerase enzyme Thiolase_N PF00108.23 gi|352681787|ref|YP_004892311.1| - 0.0042 16.5 0.0 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|352681787|ref|YP_004892311.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|352681788|ref|YP_004892312.1| - 3.9e-09 36.3 0.0 1.2e-05 24.8 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|352681788|ref|YP_004892312.1| - 3.3e-05 23.5 0.0 0.67 9.6 0.0 3.0 3 0 0 3 3 3 2 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|352681788|ref|YP_004892312.1| - 0.014 15.2 0.0 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Peptidase_M22 PF00814.25 gi|352681788|ref|YP_004892312.1| - 0.04 13.6 0.0 0.08 12.6 0.0 1.5 1 0 0 1 1 1 0 Glycoprotease family DUF35_N PF12172.8 gi|352681789|ref|YP_004892313.1| - 8.8e-12 44.7 0.4 1.9e-11 43.6 0.4 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|352681789|ref|YP_004892313.1| - 2e-11 43.7 0.3 3.1e-11 43.1 0.3 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|352681790|ref|YP_004892314.1| - 1.1e-07 31.6 0.1 1.9e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|352681790|ref|YP_004892314.1| - 6.6e-06 26.0 0.0 9.8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated CpXC PF14353.6 gi|352681790|ref|YP_004892314.1| - 0.065 13.3 0.0 0.09 12.8 0.0 1.3 1 0 0 1 1 1 0 CpXC protein zf-C2HC_2 PF13913.6 gi|352681790|ref|YP_004892314.1| - 0.1 12.6 0.6 0.2 11.6 0.6 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.6 gi|352681790|ref|YP_004892314.1| - 2.1 8.2 5.9 0.79 9.5 1.2 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Acyl-CoA_dh_1 PF00441.24 gi|352681791|ref|YP_004892315.1| - 8.7e-45 152.6 2.6 1.3e-44 152.0 2.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|352681791|ref|YP_004892315.1| - 5.9e-28 97.8 0.0 1.2e-27 96.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|352681791|ref|YP_004892315.1| - 2.5e-23 82.1 0.0 4.4e-23 81.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|352681791|ref|YP_004892315.1| - 6e-21 75.1 0.7 1e-20 74.4 0.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|352681791|ref|YP_004892315.1| - 0.086 12.5 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal Taq-exonuc PF09281.10 gi|352681791|ref|YP_004892315.1| - 0.11 12.5 0.1 0.26 11.3 0.1 1.5 1 0 0 1 1 1 0 Taq polymerase, exonuclease YiaAB PF05360.14 gi|352681793|ref|YP_004892317.1| - 0.024 14.9 2.5 0.024 14.9 2.5 3.7 5 0 0 5 5 5 0 yiaA/B two helix domain WLM PF08325.10 gi|352681794|ref|YP_004892318.1| - 0.053 13.6 0.0 0.072 13.2 0.0 1.2 1 0 0 1 1 1 0 WLM domain SprT-like PF10263.9 gi|352681794|ref|YP_004892318.1| - 0.1 12.5 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Peptidase_M48 PF01435.18 gi|352681794|ref|YP_004892318.1| - 0.12 12.1 0.2 0.33 10.7 0.2 1.7 1 1 0 1 1 1 0 Peptidase family M48 Molybdopterin PF00384.22 gi|352681795|ref|YP_004892319.1| - 5.8e-34 117.8 0.0 8.8e-18 64.5 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Ribosomal_L44 PF00935.19 gi|352681796|ref|YP_004892320.1| - 6.2e-27 93.9 7.1 8.5e-27 93.5 7.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|352681796|ref|YP_004892320.1| - 0.00079 18.8 1.3 0.46 10.0 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|352681796|ref|YP_004892320.1| - 0.0043 16.7 1.4 0.6 9.9 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352681796|ref|YP_004892320.1| - 0.011 15.6 0.6 1.3 9.1 0.2 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|352681796|ref|YP_004892320.1| - 0.015 15.2 0.2 2.1 8.3 0.0 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin_2 PF18073.1 gi|352681796|ref|YP_004892320.1| - 0.021 14.6 2.1 0.32 10.8 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF2225 PF09986.9 gi|352681796|ref|YP_004892320.1| - 0.021 14.5 0.7 0.03 14.1 0.7 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-Mss51 PF13824.6 gi|352681796|ref|YP_004892320.1| - 0.03 14.4 2.1 1.6 8.9 2.4 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HNH_5 PF14279.6 gi|352681796|ref|YP_004892320.1| - 0.036 13.9 0.4 4 7.4 0.0 2.2 2 0 0 2 2 2 0 HNH endonuclease zinc_ribbon_4 PF13717.6 gi|352681796|ref|YP_004892320.1| - 0.038 13.9 2.3 3 7.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L33 PF00471.20 gi|352681796|ref|YP_004892320.1| - 0.045 14.2 0.5 0.045 14.2 0.5 2.6 3 1 0 3 3 2 0 Ribosomal protein L33 CpXC PF14353.6 gi|352681796|ref|YP_004892320.1| - 0.065 13.3 0.3 8 6.5 0.0 2.1 2 0 0 2 2 2 0 CpXC protein zinc_ribbon_15 PF17032.5 gi|352681796|ref|YP_004892320.1| - 0.081 13.7 1.4 0.17 12.6 1.4 1.6 1 1 0 1 1 1 0 zinc-ribbon family zf_UBZ PF18439.1 gi|352681796|ref|YP_004892320.1| - 0.12 11.9 0.9 6.5 6.4 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|352681796|ref|YP_004892320.1| - 0.15 12.1 2.7 0.58 10.2 2.7 1.8 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|352681796|ref|YP_004892320.1| - 0.18 12.2 1.7 2.4 8.6 1.8 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L37e PF01907.19 gi|352681796|ref|YP_004892320.1| - 0.46 10.7 5.6 1.8 8.8 0.1 2.8 2 1 1 3 3 3 0 Ribosomal protein L37e Ribosomal_S27e PF01667.17 gi|352681797|ref|YP_004892321.1| - 8.3e-27 92.7 0.7 9.4e-27 92.5 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|352681797|ref|YP_004892321.1| - 0.00041 19.8 1.3 0.00052 19.5 1.3 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding DUF3797 PF12677.7 gi|352681797|ref|YP_004892321.1| - 0.00092 19.0 0.4 0.014 15.2 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) zinc_ribbon_6 PF14599.6 gi|352681797|ref|YP_004892321.1| - 0.0091 16.0 0.1 0.012 15.6 0.1 1.2 1 0 0 1 1 1 1 Zinc-ribbon HypA PF01155.19 gi|352681797|ref|YP_004892321.1| - 0.019 15.0 0.2 0.024 14.6 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2 PF00096.26 gi|352681797|ref|YP_004892321.1| - 0.024 15.1 0.2 1.7 9.2 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-RRN7 PF11781.8 gi|352681797|ref|YP_004892321.1| - 0.027 14.2 0.9 4.2 7.1 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF35_N PF12172.8 gi|352681797|ref|YP_004892321.1| - 0.035 14.0 2.1 3.8 7.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|352681797|ref|YP_004892321.1| - 0.036 13.5 0.5 0.68 9.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352681797|ref|YP_004892321.1| - 0.041 13.9 1.0 0.053 13.5 1.0 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|352681797|ref|YP_004892321.1| - 0.047 13.4 0.5 0.69 9.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|352681797|ref|YP_004892321.1| - 0.059 13.5 1.1 0.13 12.4 1.1 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|352681797|ref|YP_004892321.1| - 0.069 13.2 0.1 0.077 13.0 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain TFIIS_C PF01096.18 gi|352681797|ref|YP_004892321.1| - 0.071 13.0 1.7 1 9.3 1.7 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DNA_ligase_ZBD PF03119.16 gi|352681797|ref|YP_004892321.1| - 0.073 13.1 2.6 5.8 7.0 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.6 gi|352681797|ref|YP_004892321.1| - 0.088 12.8 3.1 2.1 8.3 0.1 2.5 2 1 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|352681797|ref|YP_004892321.1| - 0.1 13.0 0.5 0.13 12.6 0.5 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.6 gi|352681797|ref|YP_004892321.1| - 0.11 12.3 4.8 0.55 10.0 4.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Desulfoferrod_N PF06397.12 gi|352681797|ref|YP_004892321.1| - 0.2 11.3 7.0 3.3 7.4 0.8 3.0 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain DNA_RNApol_7kD PF03604.13 gi|352681797|ref|YP_004892321.1| - 0.8 9.4 5.4 17 5.2 5.3 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|352681797|ref|YP_004892321.1| - 1.7 8.3 4.6 1.7 8.3 0.7 2.1 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_primase_S PF01896.19 gi|352681799|ref|YP_004892323.1| - 3.8e-21 75.9 0.0 8.1e-21 74.8 0.0 1.6 1 0 0 1 1 1 1 DNA primase small subunit PCNA_C PF02747.15 gi|352681800|ref|YP_004892324.1| - 2.3e-12 47.2 0.3 1e-11 45.1 0.1 2.0 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|352681800|ref|YP_004892324.1| - 2.5e-10 40.2 0.0 2.1e-09 37.1 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|352681800|ref|YP_004892324.1| - 2e-05 24.2 0.0 2.3e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|352681800|ref|YP_004892324.1| - 0.00089 18.4 0.0 0.015 14.3 0.0 2.1 1 1 0 2 2 2 1 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta PF00712.19 gi|352681800|ref|YP_004892324.1| - 0.018 15.1 0.2 0.29 11.3 0.0 2.3 2 1 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain CusF_Ec PF11604.8 gi|352681800|ref|YP_004892324.1| - 0.034 14.1 0.4 0.28 11.2 0.0 2.5 1 1 1 2 2 2 0 Copper binding periplasmic protein CusF PepSY PF03413.19 gi|352681800|ref|YP_004892324.1| - 3.4 8.3 6.0 8 7.1 0.5 3.1 2 1 1 3 3 3 0 Peptidase propeptide and YPEB domain TFIIS_C PF01096.18 gi|352681801|ref|YP_004892325.1| - 4.2e-22 77.7 9.0 1.1e-20 73.1 4.4 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|352681801|ref|YP_004892325.1| - 3.7e-09 36.3 9.7 1.9e-07 30.8 0.1 3.2 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|352681801|ref|YP_004892325.1| - 1.2e-08 34.8 4.4 1.3e-05 25.1 1.0 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.7 gi|352681801|ref|YP_004892325.1| - 4.6e-06 26.5 4.7 0.022 14.8 0.1 2.4 2 1 0 2 2 2 2 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|352681801|ref|YP_004892325.1| - 6.5e-06 25.7 5.7 0.0021 17.7 0.3 3.4 3 1 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|352681801|ref|YP_004892325.1| - 2.2e-05 24.7 3.1 0.016 15.6 1.3 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|352681801|ref|YP_004892325.1| - 4.6e-05 22.8 5.8 0.004 16.6 0.9 2.8 2 1 0 2 2 2 2 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|352681801|ref|YP_004892325.1| - 7.2e-05 22.6 7.8 0.71 9.8 0.5 3.3 3 0 0 3 3 3 2 zinc-ribbon domain DUF2387 PF09526.10 gi|352681801|ref|YP_004892325.1| - 0.00026 21.1 3.5 0.044 13.9 1.6 2.2 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) zinc_ribbon_13 PF09855.9 gi|352681801|ref|YP_004892325.1| - 0.00027 21.0 4.2 2.4 8.4 0.0 3.2 3 0 0 3 3 3 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) PhnA_Zn_Ribbon PF08274.12 gi|352681801|ref|YP_004892325.1| - 0.00035 20.4 2.9 0.48 10.4 0.7 2.9 2 1 0 2 2 2 2 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.10 gi|352681801|ref|YP_004892325.1| - 0.00058 19.5 5.2 1.2 8.9 0.2 3.4 3 0 0 3 3 3 2 A2L zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|352681801|ref|YP_004892325.1| - 0.0006 19.4 14.5 0.36 10.6 0.3 4.0 4 0 0 4 4 4 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|352681801|ref|YP_004892325.1| - 0.0018 18.4 8.2 1.7 8.8 0.1 3.4 3 0 0 3 3 3 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|352681801|ref|YP_004892325.1| - 0.0018 18.2 6.4 0.31 11.0 2.6 2.8 2 1 1 3 3 3 1 Putative transposase DNA-binding domain zf-TFIIB PF13453.6 gi|352681801|ref|YP_004892325.1| - 0.0022 17.3 10.7 0.0086 15.4 0.6 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger DUF35_N PF12172.8 gi|352681801|ref|YP_004892325.1| - 0.0028 17.5 8.7 3 7.8 0.9 3.8 3 1 1 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|352681801|ref|YP_004892325.1| - 0.0051 16.2 10.3 0.73 9.3 0.2 3.9 4 0 0 4 4 4 2 zinc-ribbon domain zf-DNA_Pol PF08996.10 gi|352681801|ref|YP_004892325.1| - 0.007 16.1 1.5 0.32 10.7 0.2 2.0 1 1 1 2 2 2 1 DNA Polymerase alpha zinc finger UPF0547 PF10571.9 gi|352681801|ref|YP_004892325.1| - 0.0082 16.2 10.3 1.6 8.9 0.1 3.9 4 0 0 4 4 4 1 Uncharacterised protein family UPF0547 Zn_ribbon_SprT PF17283.2 gi|352681801|ref|YP_004892325.1| - 0.011 15.7 7.7 2.9 7.9 0.4 3.4 3 1 0 3 3 3 0 SprT-like zinc ribbon domain CpXC PF14353.6 gi|352681801|ref|YP_004892325.1| - 0.011 15.8 6.7 0.25 11.4 0.0 3.1 1 1 1 3 3 3 0 CpXC protein HypA PF01155.19 gi|352681801|ref|YP_004892325.1| - 0.012 15.6 3.9 0.055 13.5 0.6 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|352681801|ref|YP_004892325.1| - 0.015 15.0 6.9 1.4 8.7 0.1 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin PF00301.20 gi|352681801|ref|YP_004892325.1| - 0.015 15.3 9.1 0.5 10.4 0.0 3.3 3 0 0 3 3 3 0 Rubredoxin zinc_ribbon_10 PF10058.9 gi|352681801|ref|YP_004892325.1| - 0.02 14.6 5.6 0.55 10.0 2.1 2.8 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Terminase_GpA PF05876.12 gi|352681801|ref|YP_004892325.1| - 0.02 13.5 2.4 0.083 11.4 1.7 1.9 2 0 0 2 2 2 0 Phage terminase large subunit (GpA) YhfH PF14149.6 gi|352681801|ref|YP_004892325.1| - 0.022 14.7 3.5 7.7 6.6 0.3 3.3 3 0 0 3 3 3 0 YhfH-like protein DUF1936 PF09151.10 gi|352681801|ref|YP_004892325.1| - 0.022 14.6 11.2 0.11 12.5 0.6 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) zf-ISL3 PF14690.6 gi|352681801|ref|YP_004892325.1| - 0.023 15.4 7.2 4.7 8.0 0.1 3.8 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 eIF-5_eIF-2B PF01873.17 gi|352681801|ref|YP_004892325.1| - 0.038 13.9 1.3 0.36 10.7 0.2 2.2 2 0 0 2 2 2 0 Domain found in IF2B/IF5 Rubredoxin_2 PF18073.1 gi|352681801|ref|YP_004892325.1| - 0.039 13.7 9.9 1.2 8.9 1.5 3.3 3 0 0 3 3 3 0 Rubredoxin metal binding domain DUF3268 PF11672.8 gi|352681801|ref|YP_004892325.1| - 0.047 14.0 2.7 0.66 10.3 0.4 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain zf-ZPR1 PF03367.13 gi|352681801|ref|YP_004892325.1| - 0.052 13.4 0.5 0.98 9.3 0.1 2.1 2 0 0 2 2 2 0 ZPR1 zinc-finger domain Zn_Tnp_IS91 PF14319.6 gi|352681801|ref|YP_004892325.1| - 0.066 13.3 5.5 0.99 9.5 0.2 3.1 1 1 2 3 3 3 0 Transposase zinc-binding domain FdhE PF04216.12 gi|352681801|ref|YP_004892325.1| - 0.068 13.0 0.3 0.068 13.0 0.3 1.4 2 0 0 2 2 1 0 Protein involved in formate dehydrogenase formation zf-RING_7 PF02591.15 gi|352681801|ref|YP_004892325.1| - 0.072 13.3 1.3 2.3 8.5 0.0 3.0 3 0 0 3 3 3 0 C4-type zinc ribbon domain Stc1 PF12898.7 gi|352681801|ref|YP_004892325.1| - 0.074 13.6 2.0 5.6 7.6 0.1 2.2 1 1 1 2 2 2 0 Stc1 domain Baculo_ME53 PF06061.11 gi|352681801|ref|YP_004892325.1| - 0.077 12.2 1.3 0.17 11.1 0.2 1.8 1 1 1 2 2 2 0 Baculoviridae ME53 ADK_lid PF05191.14 gi|352681801|ref|YP_004892325.1| - 0.078 13.0 4.2 2.9 8.0 0.0 3.6 4 0 0 4 4 4 0 Adenylate kinase, active site lid zinc_ribbon_15 PF17032.5 gi|352681801|ref|YP_004892325.1| - 0.092 13.5 4.2 2.4 9.0 4.2 2.4 1 1 0 1 1 1 0 zinc-ribbon family zf-H2C2_2 PF13465.6 gi|352681801|ref|YP_004892325.1| - 0.11 12.9 13.4 5.4 7.6 0.1 3.6 4 0 0 4 4 3 0 Zinc-finger double domain FYDLN_acid PF09538.10 gi|352681801|ref|YP_004892325.1| - 0.13 12.9 4.7 3.5 8.4 0.5 2.6 1 1 2 3 3 2 0 Protein of unknown function (FYDLN_acid) Baculo_LEF5_C PF11792.8 gi|352681801|ref|YP_004892325.1| - 0.19 11.5 0.0 0.19 11.5 0.0 2.8 3 0 0 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain zf_C2H2_10 PF18414.1 gi|352681801|ref|YP_004892325.1| - 0.26 10.8 13.8 0.81 9.3 0.6 3.8 4 0 0 4 4 4 0 C2H2 type zinc-finger zf-C2H2_3 PF13878.6 gi|352681801|ref|YP_004892325.1| - 0.46 10.3 4.7 52 3.8 0.1 3.2 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Opy2 PF09463.10 gi|352681801|ref|YP_004892325.1| - 0.58 10.5 5.9 4.2 7.8 0.1 3.1 3 0 0 3 3 3 0 Opy2 protein zf-ACC PF17848.1 gi|352681801|ref|YP_004892325.1| - 0.98 9.6 8.5 8.6 6.5 0.5 3.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain zf-IS66 PF13005.7 gi|352681801|ref|YP_004892325.1| - 1.4 9.4 10.6 25 5.4 0.0 4.0 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF3797 PF12677.7 gi|352681801|ref|YP_004892325.1| - 1.5 8.8 11.9 30 4.6 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) DUF1610 PF07754.11 gi|352681801|ref|YP_004892325.1| - 1.6 8.7 12.5 2.6 8.1 0.1 3.3 4 0 0 4 4 3 0 Domain of unknown function (DUF1610) zf-tcix PF14952.6 gi|352681801|ref|YP_004892325.1| - 2.1 8.0 11.5 4.8 6.9 0.2 3.5 4 0 0 4 4 3 0 Putative treble-clef, zinc-finger, Zn-binding Nudix_N_2 PF14803.6 gi|352681801|ref|YP_004892325.1| - 2.3 8.2 13.6 8 6.5 4.6 3.5 2 2 1 3 3 3 0 Nudix N-terminal zinc_ribbon_5 PF13719.6 gi|352681801|ref|YP_004892325.1| - 2.7 7.8 7.1 52 3.7 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|352681801|ref|YP_004892325.1| - 2.8 8.2 8.5 6.1 7.1 0.7 2.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-HIT PF04438.16 gi|352681801|ref|YP_004892325.1| - 3.7 7.5 12.1 26 4.8 1.2 3.4 3 0 0 3 3 3 0 HIT zinc finger zf-Mss51 PF13824.6 gi|352681801|ref|YP_004892325.1| - 4.1 7.6 10.0 27 5.0 0.4 3.1 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2 PF00096.26 gi|352681801|ref|YP_004892325.1| - 5.3 7.7 8.8 37 5.0 1.0 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf_UBZ PF18439.1 gi|352681801|ref|YP_004892325.1| - 5.5 6.7 8.4 13 5.5 0.2 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DUF4379 PF14311.6 gi|352681801|ref|YP_004892325.1| - 6.4 7.2 10.2 17 5.9 1.7 3.2 2 1 1 4 4 4 0 Probable Zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|352681801|ref|YP_004892325.1| - 7.3 6.8 11.5 2.8 8.2 2.2 3.4 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_recom PF13408.6 gi|352681801|ref|YP_004892325.1| - 9.9 6.8 10.5 13 6.4 3.0 2.7 2 2 0 2 2 2 0 Recombinase zinc beta ribbon domain Ribosomal_S19e PF01090.19 gi|352681802|ref|YP_004892326.1| - 1e-49 167.8 0.1 1.2e-49 167.6 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|352681802|ref|YP_004892326.1| - 0.036 13.9 0.1 1.1 9.2 0.1 2.3 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain dsDNA_bind PF01984.20 gi|352681803|ref|YP_004892327.1| - 5.3e-19 68.5 11.4 8e-19 68.0 11.4 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SDA1 PF05285.12 gi|352681803|ref|YP_004892327.1| - 3.7e-05 23.3 3.1 4.2e-05 23.1 3.1 1.1 1 0 0 1 1 1 1 SDA1 PCP_red PF08369.10 gi|352681803|ref|YP_004892327.1| - 0.34 11.2 7.3 13 6.1 4.0 2.6 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit DUF444 PF04285.12 gi|352681803|ref|YP_004892327.1| - 1.5 7.8 5.0 1.7 7.7 5.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF444) Ribosomal_L39 PF00832.20 gi|352681804|ref|YP_004892328.1| - 8e-18 63.8 12.0 9.7e-18 63.5 12.0 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|352681805|ref|YP_004892329.1| - 3.5e-13 49.6 0.1 4.4e-13 49.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e NDUF_B4 PF07225.12 gi|352681805|ref|YP_004892329.1| - 0.032 14.1 0.7 0.035 14.0 0.7 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) DUF2397 PF09660.10 gi|352681806|ref|YP_004892330.1| - 0.0086 15.0 0.1 0.22 10.4 0.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF2397) CelTOS PF18659.1 gi|352681806|ref|YP_004892330.1| - 0.027 14.9 0.1 0.035 14.6 0.1 1.2 1 0 0 1 1 1 0 Cell-traversal protein for ookinetes and sporozoites Helicase_C_2 PF13307.6 gi|352681807|ref|YP_004892331.1| - 3e-14 53.6 0.0 5e-14 52.8 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|352681807|ref|YP_004892331.1| - 1.1e-06 28.4 0.2 2e-06 27.5 0.2 1.4 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|352681807|ref|YP_004892331.1| - 0.0021 18.1 0.3 0.18 11.8 0.1 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|352681807|ref|YP_004892331.1| - 0.027 14.9 0.1 0.58 10.6 0.1 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|352681807|ref|YP_004892331.1| - 0.03 14.6 0.0 6.4 7.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|352681807|ref|YP_004892331.1| - 0.082 13.2 0.1 0.67 10.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|352681808|ref|YP_004892332.1| - 2e-09 37.9 1.9 4.3e-09 36.8 1.9 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|352681808|ref|YP_004892332.1| - 0.00021 21.5 0.8 0.0088 16.3 0.8 2.4 1 1 0 1 1 1 1 AAA domain IPT PF01745.16 gi|352681808|ref|YP_004892332.1| - 0.00034 20.1 0.5 0.00059 19.3 0.0 1.6 2 0 0 2 2 2 1 Isopentenyl transferase TrwB_AAD_bind PF10412.9 gi|352681808|ref|YP_004892332.1| - 0.00074 18.5 0.2 0.17 10.8 0.0 2.2 2 1 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain CobU PF02283.16 gi|352681808|ref|YP_004892332.1| - 0.0021 17.7 0.1 0.027 14.1 0.0 2.2 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_14 PF13173.6 gi|352681808|ref|YP_004892332.1| - 0.0022 18.0 2.8 0.025 14.6 0.1 2.5 2 1 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|352681808|ref|YP_004892332.1| - 0.0088 16.6 0.2 0.022 15.3 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|352681808|ref|YP_004892332.1| - 0.019 14.7 0.2 0.3 10.8 0.0 2.1 1 1 0 2 2 2 0 AAA domain T4SS-DNA_transf PF02534.14 gi|352681808|ref|YP_004892332.1| - 0.022 13.6 0.3 2 7.1 0.0 2.1 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA PF00004.29 gi|352681808|ref|YP_004892332.1| - 0.036 14.5 1.2 0.14 12.6 0.1 2.4 2 1 1 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|352681808|ref|YP_004892332.1| - 0.1 12.8 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|352681808|ref|YP_004892332.1| - 0.17 12.2 0.0 0.28 11.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|352681808|ref|YP_004892332.1| - 1 9.2 9.6 34 4.3 9.6 2.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Glyco_hydro_4 PF02056.16 gi|352681809|ref|YP_004892333.1| - 0.036 13.6 0.1 0.039 13.5 0.1 1.1 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Peptidase_M48 PF01435.18 gi|352681811|ref|YP_004892335.1| - 6e-18 65.3 0.1 9e-18 64.8 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 FYVE PF01363.21 gi|352681813|ref|YP_004892337.1| - 0.00029 20.9 3.7 0.00032 20.8 3.7 1.1 1 0 0 1 1 1 1 FYVE zinc finger DUF1272 PF06906.11 gi|352681813|ref|YP_004892337.1| - 0.00065 19.7 1.5 0.00083 19.4 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Rhodanese_C PF12368.8 gi|352681813|ref|YP_004892337.1| - 0.0016 18.8 1.8 0.0021 18.4 1.8 1.2 1 0 0 1 1 1 1 Rhodanase C-terminal zf-HIT PF04438.16 gi|352681813|ref|YP_004892337.1| - 0.0028 17.5 3.9 0.0028 17.5 3.9 2.8 1 1 1 2 2 2 1 HIT zinc finger NOB1_Zn_bind PF08772.11 gi|352681813|ref|YP_004892337.1| - 0.007 16.5 2.2 0.008 16.3 2.2 1.1 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-C3HC4_3 PF13920.6 gi|352681813|ref|YP_004892337.1| - 0.0081 16.0 7.5 0.05 13.5 7.7 1.8 1 1 1 2 2 2 1 Zinc finger, C3HC4 type (RING finger) Prok-RING_4 PF14447.6 gi|352681813|ref|YP_004892337.1| - 0.029 14.2 2.6 0.048 13.5 2.6 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 4 zf-RING_5 PF14634.6 gi|352681813|ref|YP_004892337.1| - 0.033 14.1 7.2 0.055 13.4 7.2 1.4 1 1 0 1 1 1 0 zinc-RING finger domain Elf1 PF05129.13 gi|352681813|ref|YP_004892337.1| - 0.054 13.5 2.3 0.078 13.0 2.3 1.3 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DZR PF12773.7 gi|352681813|ref|YP_004892337.1| - 0.16 12.0 5.3 3.2 7.9 5.4 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_2 PF13923.6 gi|352681813|ref|YP_004892337.1| - 0.17 11.7 6.2 0.71 9.8 6.2 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Ribosomal_L37e PF01907.19 gi|352681813|ref|YP_004892337.1| - 0.75 10.0 8.3 5.1 7.3 7.4 2.0 1 1 0 1 1 1 0 Ribosomal protein L37e Prim_Zn_Ribbon PF08273.12 gi|352681813|ref|YP_004892337.1| - 1.9 8.8 7.6 0.75 10.1 4.0 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase NTP_transferase PF00483.23 gi|352681815|ref|YP_004892339.1| - 4.8e-44 150.8 0.0 5.8e-44 150.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|352681815|ref|YP_004892339.1| - 2.2e-13 49.3 3.0 0.0047 16.6 0.0 4.4 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|352681815|ref|YP_004892339.1| - 3e-12 47.2 0.1 4.1e-12 46.7 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|352681815|ref|YP_004892339.1| - 0.038 13.9 0.0 0.066 13.1 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase HIT PF01230.23 gi|352681818|ref|YP_004892342.1| - 7.4e-12 45.9 0.0 9.8e-12 45.5 0.0 1.1 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|352681818|ref|YP_004892342.1| - 0.0043 16.9 0.0 0.012 15.4 0.0 1.7 1 1 1 2 2 2 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|352681818|ref|YP_004892342.1| - 0.0055 17.2 0.0 0.0084 16.6 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding AAA_21 PF13304.6 gi|352681819|ref|YP_004892343.1| - 2.4e-06 27.6 0.0 0.007 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|352681819|ref|YP_004892343.1| - 9.1e-05 22.1 0.0 0.00021 21.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|352681819|ref|YP_004892343.1| - 0.00014 21.7 0.0 0.00017 21.4 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|352681819|ref|YP_004892343.1| - 0.0014 18.2 0.0 0.0098 15.3 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352681819|ref|YP_004892343.1| - 0.012 15.9 0.0 2.1 8.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF2813 PF11398.8 gi|352681819|ref|YP_004892343.1| - 0.014 14.7 0.1 0.02 14.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_23 PF13476.6 gi|352681819|ref|YP_004892343.1| - 0.018 15.5 0.0 0.026 15.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|352681819|ref|YP_004892343.1| - 0.028 14.0 0.0 0.084 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|352681819|ref|YP_004892343.1| - 0.054 13.9 0.0 0.33 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|352681819|ref|YP_004892343.1| - 0.071 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase PIN_9 PF18477.1 gi|352681820|ref|YP_004892344.1| - 2.6e-09 37.4 0.0 3.5e-09 37.0 0.0 1.3 1 1 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|352681820|ref|YP_004892344.1| - 0.002 18.4 0.0 0.0043 17.3 0.0 1.7 1 1 1 2 2 2 1 PIN domain PIN_10 PF18478.1 gi|352681820|ref|YP_004892344.1| - 0.0026 17.9 0.0 0.0038 17.4 0.0 1.4 1 0 0 1 1 1 1 PIN like domain PIN PF01850.21 gi|352681820|ref|YP_004892344.1| - 0.0061 17.1 0.0 0.01 16.3 0.0 1.4 1 1 0 1 1 1 1 PIN domain SHS2_Rpb7-N PF03876.17 gi|352681821|ref|YP_004892345.1| - 2.5e-15 56.6 0.0 4.4e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|352681821|ref|YP_004892345.1| - 8.3e-06 26.1 0.6 1.5e-05 25.2 0.6 1.5 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|352681821|ref|YP_004892345.1| - 0.0018 18.5 0.1 0.048 13.9 0.0 2.2 1 1 1 2 2 2 1 RNA polymerase III subunit Rpc25 Spt4 PF06093.13 gi|352681822|ref|YP_004892346.1| - 1.9e-18 66.3 0.3 2.4e-18 66.0 0.3 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger UPF0547 PF10571.9 gi|352681822|ref|YP_004892346.1| - 0.00012 22.1 2.3 0.00018 21.5 2.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|352681822|ref|YP_004892346.1| - 0.00048 19.8 2.9 0.00079 19.1 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|352681822|ref|YP_004892346.1| - 0.00091 18.7 1.0 0.0078 15.7 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.7 gi|352681822|ref|YP_004892346.1| - 0.001 19.1 1.2 0.0011 18.9 1.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|352681822|ref|YP_004892346.1| - 0.0021 17.4 3.8 0.0039 16.5 3.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|352681822|ref|YP_004892346.1| - 0.0025 18.6 1.2 0.0031 18.2 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon family HypA PF01155.19 gi|352681822|ref|YP_004892346.1| - 0.02 14.9 0.4 0.024 14.7 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_4 PF14570.6 gi|352681822|ref|YP_004892346.1| - 0.031 14.0 1.4 0.051 13.4 1.4 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain NRDD PF13597.6 gi|352681822|ref|YP_004892346.1| - 0.12 11.2 0.4 0.14 11.0 0.4 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-RRN7 PF11781.8 gi|352681822|ref|YP_004892346.1| - 0.16 11.7 0.3 0.16 11.7 0.3 1.8 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF1451 PF07295.11 gi|352681822|ref|YP_004892346.1| - 0.2 11.7 1.1 0.29 11.2 1.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|352681822|ref|YP_004892346.1| - 0.66 10.1 5.6 3.3 7.9 5.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain DUF3797 PF12677.7 gi|352681822|ref|YP_004892346.1| - 1.2 9.1 6.8 0.29 11.0 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) DUF4093 PF13331.6 gi|352681823|ref|YP_004892347.1| - 0.02 15.3 0.1 0.038 14.4 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4093) Laminin_G_3 PF13385.6 gi|352681824|ref|YP_004892348.1| - 0.015 15.5 1.9 0.054 13.6 0.8 2.5 1 1 0 1 1 1 0 Concanavalin A-like lectin/glucanases superfamily Arabinose_Iso_C PF11762.8 gi|352681825|ref|YP_004892349.1| - 0.0063 16.3 0.0 0.032 14.1 0.0 2.0 2 0 0 2 2 2 1 L-arabinose isomerase C-terminal domain SIS PF01380.22 gi|352681826|ref|YP_004892350.1| - 2.6e-47 160.0 2.0 6.1e-28 97.3 0.6 2.2 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|352681826|ref|YP_004892350.1| - 1.7e-25 89.8 0.0 3.8e-25 88.6 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|352681826|ref|YP_004892350.1| - 1.1e-19 70.6 0.0 2.6e-19 69.3 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|352681826|ref|YP_004892350.1| - 6.5e-05 23.0 3.6 0.00011 22.2 0.1 2.7 3 1 0 4 4 4 1 SIS domain GATase_4 PF13230.6 gi|352681826|ref|YP_004892350.1| - 0.00021 20.3 0.0 0.0003 19.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.9 gi|352681826|ref|YP_004892350.1| - 0.023 14.8 5.5 0.11 12.6 0.4 3.6 3 1 0 3 3 3 0 Bacterial phospho-glucose isomerase C-terminal SIS domain RGI1 PF10843.8 gi|352681826|ref|YP_004892350.1| - 0.088 12.5 0.0 6.8 6.3 0.0 2.2 2 0 0 2 2 2 0 Respiratory growth induced protein 1 DUF2529 PF10740.9 gi|352681826|ref|YP_004892350.1| - 0.14 11.8 0.1 0.7 9.5 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF2529) Pox_MCEL PF03291.16 gi|352681826|ref|YP_004892350.1| - 0.23 10.5 0.0 0.41 9.7 0.0 1.3 1 0 0 1 1 1 0 mRNA capping enzyme Hexapep PF00132.24 gi|352681827|ref|YP_004892351.1| - 1.8e-11 43.3 5.4 4.2e-06 26.3 0.1 5.6 2 1 4 6 6 6 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|352681827|ref|YP_004892351.1| - 0.0067 16.8 0.0 0.022 15.1 0.0 1.8 2 1 0 2 2 2 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|352681827|ref|YP_004892351.1| - 0.017 14.9 2.1 0.88 9.4 0.0 3.6 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase 4HBT PF03061.22 gi|352681828|ref|YP_004892352.1| - 3.9e-27 94.4 1.1 1.3e-14 54.3 0.0 2.3 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.6 gi|352681828|ref|YP_004892352.1| - 4.7e-05 23.9 0.0 0.037 14.5 0.0 2.2 2 0 0 2 2 2 2 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|352681828|ref|YP_004892352.1| - 0.0024 17.4 0.2 0.26 10.9 0.0 2.4 2 0 0 2 2 2 2 MaoC like domain DeoC PF01791.9 gi|352681829|ref|YP_004892353.1| - 1.4e-16 60.9 1.0 7.3e-16 58.5 1.0 1.8 1 1 0 1 1 1 1 DeoC/LacD family aldolase DHO_dh PF01180.21 gi|352681829|ref|YP_004892353.1| - 0.0055 16.0 1.1 0.0077 15.5 1.1 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase PHO4 PF01384.20 gi|352681830|ref|YP_004892354.1| - 0.53 9.3 15.3 44 3.0 15.0 2.9 1 1 0 1 1 1 0 Phosphate transporter family SRP54 PF00448.22 gi|352681831|ref|YP_004892355.1| - 1.6e-64 217.2 0.3 2.2e-64 216.7 0.3 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|352681831|ref|YP_004892355.1| - 9.9e-26 90.3 0.3 6.7e-25 87.6 0.4 2.2 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|352681831|ref|YP_004892355.1| - 3.6e-10 39.9 0.2 2.7e-09 37.1 0.0 2.6 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|352681831|ref|YP_004892355.1| - 0.00023 21.5 0.0 0.00079 19.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|352681831|ref|YP_004892355.1| - 0.0033 17.2 0.0 0.0065 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|352681831|ref|YP_004892355.1| - 0.0093 16.0 0.0 0.02 14.9 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain G-alpha PF00503.20 gi|352681831|ref|YP_004892355.1| - 0.013 14.6 0.0 0.019 14.1 0.0 1.4 1 1 0 1 1 1 0 G-protein alpha subunit AAA_19 PF13245.6 gi|352681831|ref|YP_004892355.1| - 0.014 15.8 0.2 0.88 9.9 0.1 2.6 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|352681831|ref|YP_004892355.1| - 0.014 15.5 0.1 0.048 13.7 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|352681831|ref|YP_004892355.1| - 0.015 15.5 0.0 0.038 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|352681831|ref|YP_004892355.1| - 0.015 15.7 0.5 0.086 13.3 0.5 2.3 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|352681831|ref|YP_004892355.1| - 0.023 14.0 0.1 0.07 12.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin APS_kinase PF01583.20 gi|352681831|ref|YP_004892355.1| - 0.026 14.4 0.0 0.058 13.3 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase cobW PF02492.19 gi|352681831|ref|YP_004892355.1| - 0.036 13.6 2.5 0.71 9.4 2.5 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|352681831|ref|YP_004892355.1| - 0.07 13.6 0.0 0.6 10.6 0.0 2.3 2 1 0 2 2 2 0 ABC transporter AAA_28 PF13521.6 gi|352681831|ref|YP_004892355.1| - 0.086 13.1 0.1 0.21 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain PduV-EutP PF10662.9 gi|352681831|ref|YP_004892355.1| - 0.086 12.6 0.3 14 5.4 0.1 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|352681831|ref|YP_004892355.1| - 0.094 13.1 0.5 0.4 11.1 0.1 2.1 2 1 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|352681831|ref|YP_004892355.1| - 0.13 12.2 0.1 0.32 10.9 0.1 1.7 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.6 gi|352681831|ref|YP_004892355.1| - 0.18 11.4 2.9 1.5 8.4 2.9 2.5 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|352681831|ref|YP_004892355.1| - 0.19 11.0 0.7 0.91 8.8 0.1 2.2 2 1 0 2 2 2 0 KaiC Methyltrn_RNA_2 PF04013.12 gi|352681832|ref|YP_004892356.1| - 3.8e-05 23.5 0.0 4.6e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.17 gi|352681833|ref|YP_004892357.1| - 2.2e-10 40.8 0.2 5.9e-10 39.4 0.2 1.8 1 0 0 1 1 1 1 THUMP domain OCD_Mu_crystall PF02423.15 gi|352681834|ref|YP_004892358.1| - 3.6e-61 206.9 2.1 6.4e-61 206.0 2.1 1.3 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|352681834|ref|YP_004892358.1| - 5.6e-07 29.7 0.0 1.9e-06 28.0 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|352681834|ref|YP_004892358.1| - 0.018 15.6 0.4 0.049 14.2 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF981 PF06168.11 gi|352681835|ref|YP_004892359.1| - 7.4e-51 172.7 18.2 8.4e-51 172.6 18.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) DUF3784 PF12650.7 gi|352681835|ref|YP_004892359.1| - 4.5 7.5 13.1 0.9 9.8 1.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF3784) ThiI PF02568.14 gi|352681836|ref|YP_004892360.1| - 1e-55 188.4 0.0 1.5e-55 187.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|352681836|ref|YP_004892360.1| - 6.6e-19 68.4 0.0 1.6e-18 67.1 0.0 1.7 1 0 0 1 1 1 1 THUMP domain Rhodanese PF00581.20 gi|352681836|ref|YP_004892360.1| - 2.2e-09 37.8 0.3 3.2e-08 34.1 0.0 2.6 3 0 0 3 3 3 1 Rhodanese-like domain QueC PF06508.13 gi|352681836|ref|YP_004892360.1| - 8.2e-05 22.2 0.1 0.36 10.3 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|352681836|ref|YP_004892360.1| - 0.11 12.3 0.1 1.3 8.8 0.1 2.2 1 1 0 1 1 1 0 PP-loop family PBP PF01161.20 gi|352681837|ref|YP_004892361.1| - 7.3e-33 113.7 0.0 9.2e-33 113.4 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein DUF4148 PF13663.6 gi|352681837|ref|YP_004892361.1| - 1.4 9.2 3.6 4.1 7.7 3.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4148) MFS_1 PF07690.16 gi|352681838|ref|YP_004892362.1| - 1.2e-34 119.9 73.4 1.2e-34 119.9 73.4 3.9 1 1 0 2 2 2 1 Major Facilitator Superfamily Aminotran_3 PF00202.21 gi|352681839|ref|YP_004892363.1| - 3.7e-100 335.4 0.0 4.7e-100 335.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|352681839|ref|YP_004892363.1| - 2.9e-05 23.4 0.0 5.2e-05 22.6 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II CN_hydrolase PF00795.22 gi|352681840|ref|YP_004892364.1| - 2.3e-27 96.0 0.0 2.7e-27 95.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase NAD_synthase PF02540.17 gi|352681841|ref|YP_004892365.1| - 3.4e-75 252.3 0.0 3.9e-75 252.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.21 gi|352681841|ref|YP_004892365.1| - 1.1e-07 31.8 0.0 2e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|352681841|ref|YP_004892365.1| - 4.8e-05 22.3 0.1 0.0061 15.4 0.1 2.5 3 0 0 3 3 3 2 tRNA methyl transferase Sigma70_r4 PF04545.16 gi|352681841|ref|YP_004892365.1| - 0.0031 17.0 0.0 0.029 13.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 QueC PF06508.13 gi|352681841|ref|YP_004892365.1| - 0.051 13.1 0.0 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|352681841|ref|YP_004892365.1| - 0.075 12.6 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) GATase_6 PF13522.6 gi|352681842|ref|YP_004892366.1| - 1.5e-10 41.4 0.0 2.6e-10 40.6 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|352681842|ref|YP_004892366.1| - 3.3e-08 32.8 0.0 3.5e-05 22.9 0.0 2.3 2 1 0 2 2 2 2 Glutamine amidotransferases class-II Gln-synt_C PF00120.24 gi|352681843|ref|YP_004892367.1| - 9.3e-97 324.1 0.0 1.2e-96 323.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|352681843|ref|YP_004892367.1| - 2.3e-10 40.0 0.0 4.3e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glu_synthase PF01645.17 gi|352681844|ref|YP_004892368.1| - 1.4e-97 327.1 4.4 4.8e-92 308.9 1.3 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|352681844|ref|YP_004892368.1| - 1.7e-10 40.5 6.9 0.011 14.8 0.1 4.1 4 1 0 4 4 4 3 FMN-dependent dehydrogenase Glu_syn_central PF04898.14 gi|352681844|ref|YP_004892368.1| - 6e-09 35.8 0.4 0.096 12.2 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain Cytochrome_CBB3 PF13442.6 gi|352681844|ref|YP_004892368.1| - 0.057 13.7 0.5 2.3 8.6 0.1 3.1 3 0 0 3 3 3 0 Cytochrome C oxidase, cbb3-type, subunit III DHO_dh PF01180.21 gi|352681844|ref|YP_004892368.1| - 0.072 12.3 5.4 2.8 7.1 0.0 3.3 3 1 0 3 3 3 0 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|352681844|ref|YP_004892368.1| - 1.8 7.5 5.6 6.7 5.6 2.3 2.7 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain GXGXG PF01493.19 gi|352681845|ref|YP_004892369.1| - 1.9e-20 73.3 17.7 1.6e-19 70.3 17.7 2.0 1 1 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|352681845|ref|YP_004892369.1| - 1.8e-09 37.9 0.0 3.5e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|352681845|ref|YP_004892369.1| - 1.3e-05 25.1 0.0 2.5e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain PadR PF03551.14 gi|352681846|ref|YP_004892370.1| - 3.6e-21 74.9 1.0 5e-21 74.4 0.4 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|352681846|ref|YP_004892370.1| - 5.7e-07 29.6 0.1 1.3e-06 28.4 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain RTP PF02334.16 gi|352681846|ref|YP_004892370.1| - 0.00072 20.2 0.0 0.0013 19.3 0.0 1.4 1 0 0 1 1 1 1 Replication terminator protein Replic_Relax PF13814.6 gi|352681846|ref|YP_004892370.1| - 0.0029 17.7 0.0 0.0041 17.2 0.0 1.4 1 1 0 1 1 1 1 Replication-relaxation HTH_5 PF01022.20 gi|352681846|ref|YP_004892370.1| - 0.0033 17.2 0.0 23 5.0 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family DUF3116 PF11313.8 gi|352681846|ref|YP_004892370.1| - 0.0047 16.8 0.4 0.0092 15.8 0.4 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) HTH_45 PF14947.6 gi|352681846|ref|YP_004892370.1| - 0.014 15.4 1.1 0.03 14.3 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix Med3 PF11593.8 gi|352681846|ref|YP_004892370.1| - 0.022 14.0 0.1 0.027 13.7 0.1 1.0 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal TrmB PF01978.19 gi|352681846|ref|YP_004892370.1| - 0.042 13.7 0.4 0.41 10.6 0.4 2.2 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.9 gi|352681846|ref|YP_004892370.1| - 0.089 13.1 0.0 0.18 12.1 0.0 1.5 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) NPCBM_assoc PF10633.9 gi|352681847|ref|YP_004892371.1| - 8.5e-16 58.0 12.9 3.4e-05 24.0 0.2 6.9 6 0 0 6 6 6 4 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|352681847|ref|YP_004892371.1| - 0.0001 22.6 3.2 0.0001 22.6 3.2 5.0 3 1 0 3 3 3 1 Domain of unknown function DUF11 Ig_GlcNase PF18368.1 gi|352681847|ref|YP_004892371.1| - 0.012 15.8 0.0 0.059 13.5 0.0 2.2 1 0 0 1 1 1 0 Exo-beta-D-glucosaminidase Ig-fold domain CARDB PF07705.11 gi|352681847|ref|YP_004892371.1| - 0.012 15.9 6.3 1.9 8.8 0.2 4.5 5 0 0 5 5 5 0 CARDB E1_DerP2_DerF2 PF02221.15 gi|352681847|ref|YP_004892371.1| - 0.13 12.7 1.1 1.2e+02 3.1 0.0 4.1 4 0 0 4 4 4 0 ML domain TrmB PF01978.19 gi|352681849|ref|YP_004892373.1| - 0.00047 20.0 0.2 0.00087 19.1 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|352681849|ref|YP_004892373.1| - 0.031 14.2 0.0 0.079 12.9 0.0 1.7 2 0 0 2 2 2 0 MarR family DsrC PF04358.13 gi|352681850|ref|YP_004892374.1| - 2.1e-30 105.4 0.0 2.4e-30 105.2 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein Glutaredoxin PF00462.24 gi|352681850|ref|YP_004892374.1| - 0.067 13.4 0.0 0.13 12.5 0.0 1.5 2 0 0 2 2 2 0 Glutaredoxin LexA_DNA_bind PF01726.16 gi|352681850|ref|YP_004892374.1| - 0.18 11.6 0.0 0.28 11.0 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain DUF1641 PF07849.11 gi|352681851|ref|YP_004892375.1| - 3.2e-18 65.3 3.8 4.6e-13 48.8 0.0 3.4 3 0 0 3 3 3 3 Protein of unknown function (DUF1641) Spore_YtrH PF14034.6 gi|352681851|ref|YP_004892375.1| - 0.05 13.8 0.3 0.078 13.2 0.3 1.2 1 0 0 1 1 1 0 Sporulation protein YtrH DUF4936 PF16290.5 gi|352681851|ref|YP_004892375.1| - 0.18 12.5 0.0 0.51 11.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4936) eIF-1a PF01176.19 gi|352681852|ref|YP_004892376.1| - 2.1e-23 81.9 0.3 2.6e-23 81.6 0.3 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 TOBE PF03459.17 gi|352681852|ref|YP_004892376.1| - 0.19 12.1 0.0 0.27 11.6 0.0 1.2 1 0 0 1 1 1 0 TOBE domain Glu_synthase PF01645.17 gi|352681853|ref|YP_004892377.1| - 6.2e-24 84.8 5.6 7.8e-23 81.2 4.1 2.6 1 1 1 2 2 2 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|352681853|ref|YP_004892377.1| - 5.7e-18 65.1 5.9 4.5e-14 52.2 2.1 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|352681853|ref|YP_004892377.1| - 1.3e-07 31.3 0.8 1.3e-07 31.3 0.8 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase tRNA-synt_2 PF00152.20 gi|352681854|ref|YP_004892378.1| - 3.7e-57 193.8 0.0 4.2e-57 193.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) DrsE_2 PF13686.6 gi|352681855|ref|YP_004892379.1| - 2.5e-17 63.2 2.6 1.9e-14 53.8 2.6 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|352681855|ref|YP_004892379.1| - 1.6e-09 38.2 0.0 2.3e-09 37.6 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family TusA PF01206.17 gi|352681856|ref|YP_004892380.1| - 3.9e-19 68.3 0.0 4.3e-19 68.1 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF596 PF04591.12 gi|352681856|ref|YP_004892380.1| - 0.019 15.1 0.0 0.027 14.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF596 Pyr_redox_2 PF07992.14 gi|352681857|ref|YP_004892381.1| - 5.3e-22 78.4 0.0 1.5e-21 76.9 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|352681857|ref|YP_004892381.1| - 0.00012 21.3 0.3 0.019 14.1 0.0 2.4 3 0 0 3 3 3 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|352681857|ref|YP_004892381.1| - 0.0003 19.6 0.0 0.01 14.6 0.2 2.7 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|352681857|ref|YP_004892381.1| - 0.0011 18.2 0.5 1.4 8.1 0.0 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|352681857|ref|YP_004892381.1| - 0.0012 18.8 0.0 1.8 8.5 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|352681857|ref|YP_004892381.1| - 0.0031 17.7 0.0 0.0093 16.2 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|352681857|ref|YP_004892381.1| - 0.0036 16.4 0.0 0.0053 15.9 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|352681857|ref|YP_004892381.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain DAO PF01266.24 gi|352681857|ref|YP_004892381.1| - 0.037 13.6 0.2 0.53 9.8 0.1 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|352681857|ref|YP_004892381.1| - 0.048 14.1 0.0 0.1 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|352681857|ref|YP_004892381.1| - 0.068 13.7 0.2 28 5.4 0.0 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|352681857|ref|YP_004892381.1| - 0.16 11.0 0.0 13 4.7 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein DUF1641 PF07849.11 gi|352681858|ref|YP_004892382.1| - 3.9e-05 23.4 0.1 0.00022 21.0 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Phage_cap_E PF03864.15 gi|352681858|ref|YP_004892382.1| - 0.0072 15.6 0.0 0.011 14.9 0.0 1.4 1 1 1 2 2 2 1 Phage major capsid protein E Rnk_N PF14760.6 gi|352681858|ref|YP_004892382.1| - 0.6 10.6 0.1 0.6 10.6 0.1 2.8 4 0 0 4 4 4 0 Rnk N-terminus GyrI-like PF06445.15 gi|352681859|ref|YP_004892383.1| - 5.9e-08 33.2 0.0 8.1e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain Cass2 PF14526.6 gi|352681859|ref|YP_004892383.1| - 1.4e-05 25.3 0.0 1.9e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Integron-associated effector binding protein SfsA PF03749.13 gi|352681860|ref|YP_004892384.1| - 3.4e-33 114.4 0.0 4.6e-33 114.0 0.0 1.1 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|352681860|ref|YP_004892384.1| - 2.8e-15 56.2 0.1 4.8e-15 55.5 0.1 1.4 1 0 0 1 1 1 1 SfsA N-terminal OB domain TadF PF16964.5 gi|352681861|ref|YP_004892385.1| - 0.11 12.3 0.9 0.2 11.4 0.9 1.5 1 1 0 1 1 1 0 Putative tight adherence pilin protein F AAA_assoc_C PF09821.9 gi|352681862|ref|YP_004892386.1| - 7e-17 62.1 0.1 1.1e-16 61.4 0.0 1.4 2 0 0 2 2 2 1 C-terminal AAA-associated domain BET PF17035.5 gi|352681862|ref|YP_004892386.1| - 0.022 15.0 0.0 0.066 13.4 0.0 1.9 1 0 0 1 1 1 0 Bromodomain extra-terminal - transcription regulation THUMP PF02926.17 gi|352681863|ref|YP_004892387.1| - 1.1e-13 51.6 0.0 1.3e-13 51.3 0.0 1.2 1 0 0 1 1 1 1 THUMP domain Abhydrolase_1 PF00561.20 gi|352681864|ref|YP_004892388.1| - 1.4e-16 60.9 0.0 4e-10 39.8 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|352681864|ref|YP_004892388.1| - 3.7e-13 50.6 0.6 1.1e-07 32.7 0.2 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_4 PF08386.10 gi|352681864|ref|YP_004892388.1| - 0.083 13.0 0.0 0.87 9.7 0.0 2.0 2 0 0 2 2 2 0 TAP-like protein MS_channel PF00924.18 gi|352681865|ref|YP_004892389.1| - 1.1e-14 54.5 5.5 2e-14 53.6 5.5 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel FA_desaturase PF00487.24 gi|352681865|ref|YP_004892389.1| - 2.3 8.0 6.3 0.62 9.8 1.7 1.9 1 1 1 2 2 2 0 Fatty acid desaturase Methyltransf_11 PF08241.12 gi|352681866|ref|YP_004892390.1| - 1e-16 61.3 0.2 2.4e-16 60.2 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352681866|ref|YP_004892390.1| - 1.6e-12 47.9 0.3 9.7e-12 45.4 0.1 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352681866|ref|YP_004892390.1| - 9.1e-12 45.6 0.1 1.7e-11 44.7 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|352681866|ref|YP_004892390.1| - 8e-11 41.9 0.0 1.7e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352681866|ref|YP_004892390.1| - 1.1e-10 41.5 0.0 4.2e-10 39.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Nitro_FeMo-Co PF02579.17 gi|352681866|ref|YP_004892390.1| - 6.5e-08 32.8 0.1 1.3e-07 31.9 0.1 1.5 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor MTS PF05175.14 gi|352681866|ref|YP_004892390.1| - 4.3e-06 26.4 0.0 7.1e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.15 gi|352681866|ref|YP_004892390.1| - 1.5e-05 24.9 0.5 4.4e-05 23.4 0.5 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase Ubie_methyltran PF01209.18 gi|352681866|ref|YP_004892390.1| - 2.6e-05 23.7 0.0 3.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|352681866|ref|YP_004892390.1| - 8e-05 22.3 0.1 0.00012 21.7 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|352681866|ref|YP_004892390.1| - 0.0001 21.7 0.2 0.00083 18.7 0.2 2.1 2 0 0 2 2 2 1 O-methyltransferase domain NodS PF05401.11 gi|352681866|ref|YP_004892390.1| - 0.00041 20.0 0.0 0.00062 19.4 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) ADH_zinc_N PF00107.26 gi|352681866|ref|YP_004892390.1| - 0.0058 16.6 0.1 0.64 10.0 0.0 2.3 2 0 0 2 2 2 1 Zinc-binding dehydrogenase TehB PF03848.14 gi|352681866|ref|YP_004892390.1| - 0.01 15.3 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PrmA PF06325.13 gi|352681866|ref|YP_004892390.1| - 0.014 14.8 0.2 0.02 14.3 0.2 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|352681866|ref|YP_004892390.1| - 0.063 13.4 0.0 0.091 12.9 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_32 PF13679.6 gi|352681866|ref|YP_004892390.1| - 0.071 13.1 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain UPA PF17217.3 gi|352681866|ref|YP_004892390.1| - 0.089 12.7 0.0 1.2 9.0 0.0 2.1 1 1 1 2 2 2 0 UPA domain Pterin_bind PF00809.22 gi|352681867|ref|YP_004892391.1| - 6.2e-54 183.3 0.2 1.6e-41 142.6 0.0 2.0 2 0 0 2 2 2 2 Pterin binding enzyme CdhD PF03599.16 gi|352681867|ref|YP_004892391.1| - 0.079 11.7 0.1 0.12 11.1 0.1 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit TetR_C_31 PF17940.1 gi|352681868|ref|YP_004892392.1| - 0.012 15.8 0.1 0.017 15.3 0.1 1.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Radical_SAM PF04055.21 gi|352681870|ref|YP_004892394.1| - 1.2e-26 94.1 0.0 2.6e-26 93.0 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|352681870|ref|YP_004892394.1| - 1.1e-14 54.2 0.0 1.9e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|352681870|ref|YP_004892394.1| - 0.007 16.3 0.1 0.02 14.9 0.1 1.7 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|352681870|ref|YP_004892394.1| - 0.02 15.0 0.2 0.14 12.4 0.2 2.4 2 1 0 2 2 2 0 TRAM domain DUF1450 PF07293.11 gi|352681870|ref|YP_004892394.1| - 0.055 13.3 0.0 0.27 11.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1450) tRNA-synt_1g PF09334.11 gi|352681871|ref|YP_004892395.1| - 5e-149 496.3 0.0 6.2e-149 496.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|352681871|ref|YP_004892395.1| - 3.7e-11 42.0 1.1 3.4e-06 25.6 0.1 3.4 2 2 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|352681871|ref|YP_004892395.1| - 8.1e-11 42.1 0.9 1.3e-10 41.5 0.2 1.8 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|352681871|ref|YP_004892395.1| - 4.7e-05 22.9 0.0 0.0095 15.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|352681871|ref|YP_004892395.1| - 0.025 13.5 0.0 2 7.2 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|352681871|ref|YP_004892395.1| - 0.83 9.7 4.0 1.6 8.8 4.0 1.4 1 0 0 1 1 1 0 Double zinc ribbon Prenyltransf PF01255.19 gi|352681872|ref|YP_004892396.1| - 1.1e-65 221.3 0.1 1.3e-65 221.1 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase tRNA_bind PF01588.20 gi|352681873|ref|YP_004892397.1| - 8.9e-26 89.9 0.1 9.7e-26 89.7 0.1 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain HupF_HypC PF01455.18 gi|352681873|ref|YP_004892397.1| - 0.093 12.9 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 HupF/HypC family Big_3_5 PF16640.5 gi|352681876|ref|YP_004892400.1| - 8.2e-15 54.8 34.0 2.4e-06 27.6 0.2 6.9 6 1 0 6 6 6 5 Bacterial Ig-like domain (group 3) CarboxypepD_reg PF13620.6 gi|352681876|ref|YP_004892400.1| - 0.19 12.0 3.8 0.32 11.3 0.3 3.4 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|352681876|ref|YP_004892400.1| - 0.33 10.9 9.6 2.4 8.1 0.0 4.4 5 0 0 5 5 5 0 PEGA domain HAD_2 PF13419.6 gi|352681877|ref|YP_004892401.1| - 1.9e-10 41.1 0.0 2.2e-10 40.9 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|352681877|ref|YP_004892401.1| - 6.8e-06 26.5 0.0 2.3e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|352681877|ref|YP_004892401.1| - 0.0017 18.4 0.0 0.003 17.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like A1_Propeptide PF07966.12 gi|352681877|ref|YP_004892401.1| - 0.15 11.9 0.1 0.29 11.0 0.1 1.5 1 0 0 1 1 1 0 A1 Propeptide CbiA PF01656.23 gi|352681878|ref|YP_004892402.1| - 4.8e-06 26.6 0.0 7.4e-06 26.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|352681878|ref|YP_004892402.1| - 2.5e-05 24.3 1.0 0.0001 22.3 1.1 1.9 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|352681878|ref|YP_004892402.1| - 0.00054 19.5 0.0 0.001 18.6 0.0 1.4 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|352681878|ref|YP_004892402.1| - 0.00064 19.3 0.1 0.0011 18.5 0.0 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|352681878|ref|YP_004892402.1| - 0.018 14.3 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ NACHT PF05729.12 gi|352681878|ref|YP_004892402.1| - 0.029 14.3 0.4 0.33 10.9 0.0 2.2 2 1 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|352681878|ref|YP_004892402.1| - 0.032 13.8 0.1 0.12 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|352681878|ref|YP_004892402.1| - 0.11 11.6 0.9 0.38 9.9 0.9 1.7 1 1 1 2 2 2 0 Anion-transporting ATPase Phage_holin_3_6 PF07332.11 gi|352681879|ref|YP_004892403.1| - 0.0055 16.7 0.0 0.0062 16.6 0.0 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Halogen_Hydrol PF10112.9 gi|352681879|ref|YP_004892403.1| - 0.19 11.7 0.0 0.23 11.5 0.0 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DDRGK PF09756.9 gi|352681881|ref|YP_004892405.1| - 0.0072 15.9 1.9 0.01 15.4 0.1 2.0 2 1 0 2 2 2 1 DDRGK domain TBPIP PF07106.13 gi|352681881|ref|YP_004892405.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.6 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain PhoU PF01895.19 gi|352681883|ref|YP_004892407.1| - 6.2e-11 42.6 0.7 6.2e-11 42.6 0.7 3.0 3 0 0 3 3 3 1 PhoU domain MazE_antitoxin PF04014.18 gi|352681883|ref|YP_004892407.1| - 4.1e-07 29.8 0.6 1.3e-06 28.1 0.1 2.2 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF357 PF04010.13 gi|352681883|ref|YP_004892407.1| - 0.3 11.2 2.2 2.1 8.5 0.1 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF357) DUF1614 PF07758.11 gi|352681884|ref|YP_004892408.1| - 4.5e-47 160.2 8.6 4.5e-47 160.2 8.6 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1614) CRS1_YhbY PF01985.21 gi|352681884|ref|YP_004892408.1| - 0.062 13.5 0.0 7.8 6.8 0.0 2.3 2 0 0 2 2 2 0 CRS1 / YhbY (CRM) domain DMRL_synthase PF00885.19 gi|352681885|ref|YP_004892409.1| - 1.9e-06 27.8 0.1 2.4e-06 27.4 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase RHH_1 PF01402.21 gi|352681886|ref|YP_004892410.1| - 1.7e-07 30.9 0.0 3.5e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|352681886|ref|YP_004892410.1| - 9.4e-07 28.9 0.1 2.1e-06 27.8 0.0 1.6 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|352681886|ref|YP_004892410.1| - 0.00056 19.8 0.0 0.0022 17.9 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix domain HicB_lk_antitox PF15919.5 gi|352681886|ref|YP_004892410.1| - 0.0073 16.4 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_5 PF07878.11 gi|352681886|ref|YP_004892410.1| - 0.039 13.8 0.1 0.064 13.2 0.1 1.3 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DUF3562 PF12085.8 gi|352681886|ref|YP_004892410.1| - 0.11 12.1 0.2 3.2 7.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) HTH_16 PF12645.7 gi|352681886|ref|YP_004892410.1| - 0.15 12.1 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|352681886|ref|YP_004892410.1| - 0.2 11.8 0.2 3 8.0 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain CCG PF02754.16 gi|352681887|ref|YP_004892411.1| - 4.7e-11 42.7 0.0 1.1e-06 28.7 0.0 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|352681888|ref|YP_004892412.1| - 6.4e-14 52.2 4.8 8.3e-14 51.8 4.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352681888|ref|YP_004892412.1| - 4.8e-11 43.1 6.0 6.9e-11 42.6 6.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352681888|ref|YP_004892412.1| - 2.7e-09 37.4 5.7 3.3e-09 37.1 5.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352681888|ref|YP_004892412.1| - 8e-09 35.5 9.3 0.00029 20.9 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681888|ref|YP_004892412.1| - 1.7e-08 34.4 10.3 0.00058 20.2 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352681888|ref|YP_004892412.1| - 2.5e-08 33.6 12.1 0.00025 21.0 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352681888|ref|YP_004892412.1| - 4.9e-08 33.0 4.5 8.8e-08 32.2 4.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352681888|ref|YP_004892412.1| - 1.8e-07 30.6 14.3 0.00092 18.9 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|352681888|ref|YP_004892412.1| - 3e-07 30.1 13.7 0.0016 18.4 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681888|ref|YP_004892412.1| - 3.5e-07 30.2 7.8 0.0035 17.4 0.7 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352681888|ref|YP_004892412.1| - 4.4e-05 24.3 9.1 0.00027 21.8 9.3 1.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|352681888|ref|YP_004892412.1| - 7.2e-05 23.6 4.6 0.059 14.2 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|352681888|ref|YP_004892412.1| - 0.0009 19.4 8.7 0.019 15.2 0.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|352681888|ref|YP_004892412.1| - 0.0042 16.9 7.1 0.011 15.5 0.5 2.1 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|352681888|ref|YP_004892412.1| - 0.01 16.7 16.1 0.07 14.1 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|352681888|ref|YP_004892412.1| - 0.27 11.8 10.6 2.3 8.9 1.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Prok-JAB PF14464.6 gi|352681889|ref|YP_004892413.1| - 3.3e-14 52.7 0.0 4.1e-14 52.3 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peptidase_M24 PF00557.24 gi|352681890|ref|YP_004892414.1| - 2.1e-59 200.8 0.1 2.8e-59 200.3 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|352681890|ref|YP_004892414.1| - 2.7e-06 28.0 0.0 5.9e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain dUTPase PF00692.19 gi|352681891|ref|YP_004892415.1| - 3.2e-18 65.7 0.0 2.9e-17 62.6 0.0 1.9 2 0 0 2 2 2 1 dUTPase DCD PF06559.11 gi|352681891|ref|YP_004892415.1| - 0.0038 16.1 0.0 0.035 12.9 0.0 2.6 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Peptidase_U4 PF03419.13 gi|352681892|ref|YP_004892416.1| - 0.39 10.0 6.4 0.43 9.8 6.4 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA ThiS PF02597.20 gi|352681893|ref|YP_004892417.1| - 2.9e-07 31.0 0.0 3.2e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|352681893|ref|YP_004892417.1| - 9.4e-06 25.9 0.0 1.1e-05 25.7 0.0 1.3 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) DNA_binding_1 PF01035.20 gi|352681894|ref|YP_004892418.1| - 3.4e-20 71.9 0.1 4.8e-20 71.5 0.1 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Fer4_15 PF13459.6 gi|352681895|ref|YP_004892419.1| - 2.3e-08 34.7 0.0 2.8e-08 34.4 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|352681895|ref|YP_004892419.1| - 2.2e-05 24.9 0.0 3.2e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|352681895|ref|YP_004892419.1| - 8.3e-05 22.6 0.5 0.00032 20.7 0.5 1.8 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster DUF5067 PF16729.5 gi|352681895|ref|YP_004892419.1| - 0.15 12.0 0.0 0.15 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5067) Hydrolase_3 PF08282.12 gi|352681896|ref|YP_004892420.1| - 1.1e-12 48.3 0.0 1.6e-12 47.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|352681896|ref|YP_004892420.1| - 1.7e-07 31.7 0.0 0.0033 17.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|352681896|ref|YP_004892420.1| - 2.2e-07 31.5 0.1 7.1e-07 29.8 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|352681896|ref|YP_004892420.1| - 0.0023 17.5 0.0 0.004 16.7 0.0 1.4 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_like PF13242.6 gi|352681896|ref|YP_004892420.1| - 0.0089 16.1 0.0 0.019 15.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|352681896|ref|YP_004892420.1| - 0.025 14.7 0.0 0.31 11.1 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PEP-utilizers_C PF02896.18 gi|352681897|ref|YP_004892421.1| - 1e-80 271.0 0.1 1.6e-80 270.3 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|352681897|ref|YP_004892421.1| - 3.5e-52 177.7 0.0 5.6e-43 147.5 0.0 2.3 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|352681897|ref|YP_004892421.1| - 7.3e-26 89.7 1.1 1.8e-25 88.4 1.1 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain ORF6C PF10552.9 gi|352681897|ref|YP_004892421.1| - 0.067 13.3 0.2 0.37 10.9 0.0 2.2 2 0 0 2 2 2 0 ORF6C domain Metallophos PF00149.28 gi|352681898|ref|YP_004892422.1| - 9.3e-19 68.7 0.0 1.4e-18 68.2 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|352681898|ref|YP_004892422.1| - 0.00065 19.9 0.0 0.0011 19.2 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TatD_DNase PF01026.21 gi|352681899|ref|YP_004892423.1| - 4.5e-49 167.1 0.0 5.2e-49 166.9 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase tRNA_edit PF04073.15 gi|352681900|ref|YP_004892424.1| - 5.5e-25 87.8 0.2 6.5e-25 87.6 0.2 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain Peptidase_S51 PF03575.17 gi|352681900|ref|YP_004892424.1| - 0.085 12.5 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 CBS PF00571.28 gi|352681901|ref|YP_004892425.1| - 5.8e-15 55.5 0.2 6.8e-08 32.9 0.1 2.3 2 0 0 2 2 2 2 CBS domain DUF3126 PF11324.8 gi|352681901|ref|YP_004892425.1| - 0.087 12.7 0.6 3.5 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3126) UbiD PF01977.16 gi|352681903|ref|YP_004892427.1| - 4.3e-137 457.3 0.0 4.9e-137 457.1 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiA PF01040.18 gi|352681904|ref|YP_004892428.1| - 2e-36 125.6 20.8 2.6e-36 125.2 20.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family CobD_Cbib PF03186.13 gi|352681905|ref|YP_004892429.1| - 2.7e-54 184.3 1.6 3.3e-54 184.0 1.6 1.1 1 0 0 1 1 1 1 CobD/Cbib protein DUF2070 PF09843.9 gi|352681905|ref|YP_004892429.1| - 0.14 10.4 0.7 0.18 10.0 0.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) NADHdh PF00146.21 gi|352681906|ref|YP_004892430.1| - 0.042 13.1 0.1 0.048 13.0 0.1 1.0 1 0 0 1 1 1 0 NADH dehydrogenase HRG PF16954.5 gi|352681906|ref|YP_004892430.1| - 1.1 9.7 4.4 2.3 8.7 4.3 1.6 1 1 0 1 1 1 0 Haem-transporter, endosomal/lysosomal, haem-responsive gene Radical_SAM PF04055.21 gi|352681907|ref|YP_004892431.1| - 7.7e-17 62.2 0.0 3e-16 60.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily PLDc_2 PF13091.6 gi|352681909|ref|YP_004892433.1| - 1.7e-28 99.2 0.0 1.2e-21 77.0 0.1 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|352681909|ref|YP_004892433.1| - 4.1e-05 23.6 1.5 0.022 14.9 0.0 2.4 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|352681909|ref|YP_004892433.1| - 0.0018 17.5 0.0 0.0031 16.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB Glycos_transf_2 PF00535.26 gi|352681910|ref|YP_004892434.1| - 2.9e-30 105.3 0.0 3.8e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|352681910|ref|YP_004892434.1| - 5.7e-21 74.9 6.6 2e-20 73.1 6.9 1.7 1 1 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|352681910|ref|YP_004892434.1| - 1.2e-13 51.5 0.1 2e-13 50.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF4133 PF13571.6 gi|352681910|ref|YP_004892434.1| - 0.051 13.9 0.5 0.13 12.6 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) Glyco_tranf_2_4 PF13704.6 gi|352681910|ref|YP_004892434.1| - 0.067 13.7 0.0 0.13 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|352681910|ref|YP_004892434.1| - 0.077 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF4235 PF14019.6 gi|352681910|ref|YP_004892434.1| - 0.27 11.3 0.0 0.27 11.3 0.0 3.3 4 1 0 4 4 4 0 Protein of unknown function (DUF4235) ATPase PF06745.13 gi|352681911|ref|YP_004892435.1| - 2.6e-26 92.4 0.0 4.5e-15 55.6 0.0 3.3 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|352681911|ref|YP_004892435.1| - 2.8e-12 46.6 0.0 2.6e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|352681911|ref|YP_004892435.1| - 3.9e-10 40.4 0.0 0.0013 19.1 0.0 3.9 4 0 0 4 4 4 2 AAA ATPase domain AAA_22 PF13401.6 gi|352681911|ref|YP_004892435.1| - 1.4e-09 38.3 0.0 0.0021 18.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|352681911|ref|YP_004892435.1| - 3.8e-09 36.5 0.1 0.00078 19.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA PF00004.29 gi|352681911|ref|YP_004892435.1| - 4.5e-07 30.4 0.0 0.047 14.1 0.0 2.7 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|352681911|ref|YP_004892435.1| - 4.9e-07 29.8 0.1 0.017 15.1 0.0 2.7 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|352681911|ref|YP_004892435.1| - 1.4e-06 28.3 0.2 0.04 13.8 0.0 3.1 2 2 0 2 2 2 2 NACHT domain GvpD PF07088.11 gi|352681911|ref|YP_004892435.1| - 1.6e-06 27.1 0.1 0.0066 15.1 0.0 3.0 3 0 0 3 3 3 2 GvpD gas vesicle protein AAA_24 PF13479.6 gi|352681911|ref|YP_004892435.1| - 1.7e-06 27.9 0.1 0.058 13.1 0.0 3.3 3 1 0 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|352681911|ref|YP_004892435.1| - 2.2e-06 28.2 0.0 0.009 16.6 0.0 2.6 3 0 0 3 3 2 2 AAA domain ATPase_2 PF01637.18 gi|352681911|ref|YP_004892435.1| - 4.8e-06 26.7 0.0 0.0073 16.3 0.0 2.4 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|352681911|ref|YP_004892435.1| - 1.6e-05 24.4 0.2 0.096 12.1 0.0 2.2 2 0 0 2 2 2 2 PhoH-like protein RNA_helicase PF00910.22 gi|352681911|ref|YP_004892435.1| - 4.2e-05 23.9 0.0 0.32 11.4 0.0 2.4 2 0 0 2 2 2 2 RNA helicase NTPase_1 PF03266.15 gi|352681911|ref|YP_004892435.1| - 5e-05 23.3 0.3 1.2 9.0 0.0 3.6 3 1 0 3 3 3 1 NTPase AAA_19 PF13245.6 gi|352681911|ref|YP_004892435.1| - 6.9e-05 23.2 0.2 0.66 10.3 0.1 2.7 2 1 1 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|352681911|ref|YP_004892435.1| - 8e-05 22.9 0.0 0.1 12.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.22 gi|352681911|ref|YP_004892435.1| - 8.6e-05 22.2 0.0 0.34 10.5 0.0 2.9 3 0 0 3 3 3 2 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|352681911|ref|YP_004892435.1| - 0.00012 21.9 0.2 0.11 12.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.12 gi|352681911|ref|YP_004892435.1| - 0.00013 21.7 0.1 0.75 9.5 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|352681911|ref|YP_004892435.1| - 0.00022 21.3 0.0 0.76 9.8 0.0 3.0 2 1 1 3 3 3 2 AAA domain DnaB_C PF03796.15 gi|352681911|ref|YP_004892435.1| - 0.00026 20.4 0.0 0.77 9.0 0.0 2.3 2 0 0 2 2 2 2 DnaB-like helicase C terminal domain NB-ARC PF00931.22 gi|352681911|ref|YP_004892435.1| - 0.00032 20.0 0.0 0.58 9.3 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_33 PF13671.6 gi|352681911|ref|YP_004892435.1| - 0.00042 20.5 0.1 0.056 13.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain ATP-synt_ab PF00006.25 gi|352681911|ref|YP_004892435.1| - 0.00055 19.6 0.0 0.063 12.9 0.0 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_17 PF13207.6 gi|352681911|ref|YP_004892435.1| - 0.00065 20.1 0.0 0.048 14.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|352681911|ref|YP_004892435.1| - 0.00093 19.1 0.0 0.72 9.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 gi|352681911|ref|YP_004892435.1| - 0.0013 19.0 0.0 0.24 11.6 0.0 2.5 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase CbiA PF01656.23 gi|352681911|ref|YP_004892435.1| - 0.0013 18.8 0.2 1.8 8.6 0.1 2.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 gi|352681911|ref|YP_004892435.1| - 0.0027 17.4 0.6 1.1 9.0 0.1 2.6 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|352681911|ref|YP_004892435.1| - 0.0028 18.2 1.5 0.53 10.7 0.2 2.2 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|352681911|ref|YP_004892435.1| - 0.0035 16.6 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) ABC_tran PF00005.27 gi|352681911|ref|YP_004892435.1| - 0.0045 17.5 0.0 0.91 10.0 0.0 2.8 3 0 0 3 3 3 1 ABC transporter KdpD PF02702.17 gi|352681911|ref|YP_004892435.1| - 0.01 15.3 0.0 0.087 12.3 0.0 2.1 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain RsgA_GTPase PF03193.16 gi|352681911|ref|YP_004892435.1| - 0.01 15.7 0.0 3.2 7.6 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase Mg_chelatase PF01078.21 gi|352681911|ref|YP_004892435.1| - 0.011 15.2 0.1 6.8 6.0 0.0 2.7 3 0 0 3 3 3 0 Magnesium chelatase, subunit ChlI AAA_31 PF13614.6 gi|352681911|ref|YP_004892435.1| - 0.012 15.6 0.1 1.3 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|352681911|ref|YP_004892435.1| - 0.012 15.1 0.1 4.6 6.7 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|352681911|ref|YP_004892435.1| - 0.014 15.1 0.0 2.6 7.7 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain RecA PF00154.21 gi|352681911|ref|YP_004892435.1| - 0.016 14.7 0.0 1.6 8.1 0.0 2.4 2 1 0 2 2 2 0 recA bacterial DNA recombination protein TIP49 PF06068.13 gi|352681911|ref|YP_004892435.1| - 0.021 14.0 0.0 3.7 6.7 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain IPT PF01745.16 gi|352681911|ref|YP_004892435.1| - 0.023 14.1 0.4 0.82 9.0 0.1 2.2 2 0 0 2 2 2 0 Isopentenyl transferase AAA_13 PF13166.6 gi|352681911|ref|YP_004892435.1| - 0.023 13.3 0.0 3.6 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|352681911|ref|YP_004892435.1| - 0.027 14.1 0.1 2.1 7.9 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain TsaE PF02367.17 gi|352681911|ref|YP_004892435.1| - 0.059 13.4 1.0 11 6.0 0.2 2.7 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Viral_helicase1 PF01443.18 gi|352681911|ref|YP_004892435.1| - 0.089 12.5 0.0 15 5.2 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|352681911|ref|YP_004892435.1| - 0.092 12.7 0.1 13 5.8 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ATP_bind_1 PF03029.17 gi|352681911|ref|YP_004892435.1| - 0.095 12.5 0.0 15 5.3 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|352681911|ref|YP_004892435.1| - 0.11 12.4 0.1 7.3 6.5 0.0 2.8 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B Ras PF00071.22 gi|352681911|ref|YP_004892435.1| - 0.16 11.6 0.0 2.8 7.5 0.0 2.2 2 0 0 2 2 2 0 Ras family Parvo_NS1 PF01057.17 gi|352681911|ref|YP_004892435.1| - 0.2 10.7 0.0 1.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 Slx4 PF09494.10 gi|352681912|ref|YP_004892436.1| - 0.014 15.3 0.1 0.024 14.6 0.1 1.3 1 0 0 1 1 1 0 Slx4 endonuclease Thioredoxin_11 PF18078.1 gi|352681912|ref|YP_004892436.1| - 0.14 12.3 0.1 0.26 11.4 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin-like SNTX domain TYW3 PF02676.14 gi|352681913|ref|YP_004892437.1| - 7.3e-28 97.4 0.0 1.9e-27 96.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase TYW3 DUF3798 PF12683.7 gi|352681913|ref|YP_004892437.1| - 0.059 12.8 0.0 0.081 12.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Ubie_methyltran PF01209.18 gi|352681914|ref|YP_004892438.1| - 2.4e-18 66.4 0.0 3.2e-18 65.9 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|352681914|ref|YP_004892438.1| - 5.4e-17 62.2 0.0 8.4e-17 61.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352681914|ref|YP_004892438.1| - 2.4e-14 53.8 0.0 4.9e-14 52.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352681914|ref|YP_004892438.1| - 1.2e-08 35.6 0.0 2.1e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352681914|ref|YP_004892438.1| - 1.4e-08 34.8 0.0 2.1e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|352681914|ref|YP_004892438.1| - 2e-08 34.2 0.0 4.5e-08 33.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|352681914|ref|YP_004892438.1| - 8.7e-06 25.5 0.0 1.4e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|352681914|ref|YP_004892438.1| - 0.0029 16.6 0.1 0.0041 16.1 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CMAS PF02353.20 gi|352681914|ref|YP_004892438.1| - 0.0098 15.2 0.0 0.014 14.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|352681914|ref|YP_004892438.1| - 0.023 14.4 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|352681914|ref|YP_004892438.1| - 0.058 12.9 0.0 0.082 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|352681914|ref|YP_004892438.1| - 0.061 13.3 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CDC37_C PF08564.10 gi|352681914|ref|YP_004892438.1| - 0.21 11.7 0.0 27 5.0 0.0 2.2 2 0 0 2 2 2 0 Cdc37 C terminal domain Methyltransf_23 PF13489.6 gi|352681915|ref|YP_004892439.1| - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|352681915|ref|YP_004892439.1| - 0.088 13.5 0.0 0.21 12.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PGM_PMM_I PF02878.16 gi|352681915|ref|YP_004892439.1| - 0.13 11.9 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Asparaginase_C PF17763.1 gi|352681916|ref|YP_004892440.1| - 0.01 16.0 0.0 1.1 9.5 0.0 2.1 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain Desulfoferrod_N PF06397.12 gi|352681916|ref|YP_004892440.1| - 0.022 14.4 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DNA_ligase_ZBD PF03119.16 gi|352681916|ref|YP_004892440.1| - 0.022 14.8 0.1 0.022 14.8 0.1 1.9 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|352681916|ref|YP_004892440.1| - 0.062 13.4 1.8 3.4 7.9 0.3 2.4 1 1 0 2 2 2 0 Zinc ribbon domain zf-DNL PF05180.12 gi|352681916|ref|YP_004892440.1| - 0.077 12.9 0.1 0.14 12.1 0.1 1.6 2 0 0 2 2 2 0 DNL zinc finger DUF1178 PF06676.11 gi|352681916|ref|YP_004892440.1| - 0.091 13.2 0.1 8.5 6.8 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1178) Thioredoxin_3 PF13192.6 gi|352681916|ref|YP_004892440.1| - 0.12 12.4 0.0 0.28 11.3 0.0 1.6 2 0 0 2 2 2 0 Thioredoxin domain zf-RRN7 PF11781.8 gi|352681916|ref|YP_004892440.1| - 0.23 11.2 1.3 2.5 7.8 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 UPF0126 PF03458.13 gi|352681919|ref|YP_004892443.1| - 4.6e-43 145.0 16.5 5.3e-23 80.7 6.5 2.2 2 0 0 2 2 2 2 UPF0126 domain 2_5_RNA_ligase2 PF13563.6 gi|352681921|ref|YP_004892445.1| - 4e-09 36.5 0.2 3.2e-08 33.6 0.2 1.9 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|352681921|ref|YP_004892445.1| - 1.9e-06 27.9 1.3 0.0017 18.5 0.0 2.4 2 1 0 2 2 2 2 LigT like Phosphoesterase ABC_tran PF00005.27 gi|352681922|ref|YP_004892446.1| - 1.4e-41 142.2 0.0 2.5e-20 73.4 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|352681922|ref|YP_004892446.1| - 3e-13 50.2 4.1 0.00063 19.6 0.0 4.2 3 1 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|352681922|ref|YP_004892446.1| - 2.1e-12 46.6 4.5 5e-12 45.4 4.5 1.6 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|352681922|ref|YP_004892446.1| - 2.6e-11 43.4 2.2 0.00051 19.5 0.4 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4_6 PF12837.7 gi|352681922|ref|YP_004892446.1| - 1.5e-07 31.2 12.6 9.7e-05 22.3 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|352681922|ref|YP_004892446.1| - 4.3e-07 29.5 2.8 4.3e-07 29.5 2.8 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain AAA PF00004.29 gi|352681922|ref|YP_004892446.1| - 1.1e-06 29.1 0.1 0.018 15.5 0.0 3.3 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|352681922|ref|YP_004892446.1| - 3.6e-05 24.2 0.0 0.0044 17.4 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain Fer4_21 PF14697.6 gi|352681922|ref|YP_004892446.1| - 0.00016 21.7 7.8 0.00027 21.0 7.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_15 PF13175.6 gi|352681922|ref|YP_004892446.1| - 0.00016 21.5 0.1 0.51 10.0 0.0 2.8 4 0 0 4 4 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|352681922|ref|YP_004892446.1| - 0.00034 20.8 0.2 0.071 13.3 0.0 3.3 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|352681922|ref|YP_004892446.1| - 0.00055 20.0 0.2 0.43 10.6 0.0 2.8 2 1 0 2 2 2 1 AAA domain Fer4_10 PF13237.6 gi|352681922|ref|YP_004892446.1| - 0.00055 20.0 11.8 0.0046 17.0 2.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain MMR_HSR1 PF01926.23 gi|352681922|ref|YP_004892446.1| - 0.0008 19.5 0.1 0.22 11.6 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|352681922|ref|YP_004892446.1| - 0.0011 19.3 0.2 0.11 12.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain Fer4_2 PF12797.7 gi|352681922|ref|YP_004892446.1| - 0.0013 18.7 9.9 0.0018 18.2 1.1 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Roc PF08477.13 gi|352681922|ref|YP_004892446.1| - 0.0014 18.8 0.0 0.053 13.7 0.0 2.4 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase Fer4_7 PF12838.7 gi|352681922|ref|YP_004892446.1| - 0.0023 18.5 1.6 0.0023 18.5 1.6 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352681922|ref|YP_004892446.1| - 0.003 17.7 9.1 0.0061 16.7 8.5 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain AAA_23 PF13476.6 gi|352681922|ref|YP_004892446.1| - 0.0031 18.1 0.1 1.6 9.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|352681922|ref|YP_004892446.1| - 0.0035 17.1 0.2 0.37 10.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|352681922|ref|YP_004892446.1| - 0.0037 17.8 0.1 1.8 9.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|352681922|ref|YP_004892446.1| - 0.0051 16.6 0.1 0.96 9.2 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain NTPase_1 PF03266.15 gi|352681922|ref|YP_004892446.1| - 0.0051 16.7 3.2 0.056 13.4 0.0 3.2 4 0 0 4 4 3 1 NTPase RecA PF00154.21 gi|352681922|ref|YP_004892446.1| - 0.0054 16.2 0.1 0.23 10.9 0.0 2.2 2 0 0 2 2 2 1 recA bacterial DNA recombination protein RsgA_GTPase PF03193.16 gi|352681922|ref|YP_004892446.1| - 0.0055 16.6 0.7 0.2 11.5 0.1 3.0 3 0 0 3 3 3 1 RsgA GTPase SbcCD_C PF13558.6 gi|352681922|ref|YP_004892446.1| - 0.0059 16.8 0.1 5.2 7.4 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|352681922|ref|YP_004892446.1| - 0.0067 16.3 0.4 0.67 9.8 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.6 gi|352681922|ref|YP_004892446.1| - 0.0088 15.6 0.8 0.3 10.6 0.0 2.9 3 0 0 3 3 3 1 AAA domain NB-ARC PF00931.22 gi|352681922|ref|YP_004892446.1| - 0.012 14.8 0.7 3.4 6.8 0.4 2.5 2 1 0 2 2 2 0 NB-ARC domain CLP1_P PF16575.5 gi|352681922|ref|YP_004892446.1| - 0.016 15.0 0.0 2.8 7.7 0.0 3.1 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|352681922|ref|YP_004892446.1| - 0.023 13.7 1.2 0.052 12.5 0.1 1.9 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|352681922|ref|YP_004892446.1| - 0.024 14.4 0.4 2.5 7.9 0.1 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|352681922|ref|YP_004892446.1| - 0.027 14.8 0.0 2 8.9 0.0 2.6 2 0 0 2 2 2 0 RNA helicase Rad17 PF03215.15 gi|352681922|ref|YP_004892446.1| - 0.032 14.1 0.1 8.7 6.2 0.0 2.9 2 1 1 3 3 3 0 Rad17 P-loop domain NACHT PF05729.12 gi|352681922|ref|YP_004892446.1| - 0.045 13.7 0.3 0.23 11.4 0.0 2.1 2 0 0 2 2 2 0 NACHT domain Fer4_16 PF13484.6 gi|352681922|ref|YP_004892446.1| - 0.049 14.6 1.6 0.049 14.6 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain ATP-synt_ab PF00006.25 gi|352681922|ref|YP_004892446.1| - 0.058 13.0 0.1 13 5.3 0.0 2.6 3 0 0 3 3 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SRP54 PF00448.22 gi|352681922|ref|YP_004892446.1| - 0.075 12.6 0.0 0.66 9.6 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ATPase_2 PF01637.18 gi|352681922|ref|YP_004892446.1| - 0.079 12.9 0.1 0.37 10.7 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DUF1670 PF07900.11 gi|352681922|ref|YP_004892446.1| - 0.095 12.0 0.3 0.27 10.5 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) TsaE PF02367.17 gi|352681922|ref|YP_004892446.1| - 0.12 12.4 1.7 1.1 9.3 0.0 2.8 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|352681922|ref|YP_004892446.1| - 0.14 11.7 0.1 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region ATP_bind_1 PF03029.17 gi|352681922|ref|YP_004892446.1| - 0.18 11.6 0.1 0.89 9.3 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|352681922|ref|YP_004892446.1| - 0.2 11.4 0.2 1.7 8.3 0.0 2.4 2 1 0 2 2 2 0 AAA domain Fer4_4 PF12800.7 gi|352681922|ref|YP_004892446.1| - 0.3 11.7 11.3 0.23 12.1 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|352681922|ref|YP_004892446.1| - 2.1 9.0 9.0 30 5.3 9.1 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352681922|ref|YP_004892446.1| - 3.3 8.2 7.6 0.24 11.8 1.5 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|352681922|ref|YP_004892446.1| - 6.3 8.0 14.4 2.8 9.1 4.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|352681922|ref|YP_004892446.1| - 6.8 7.5 9.4 7.5e+02 1.0 9.5 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain RNA_POL_M_15KD PF02150.16 gi|352681923|ref|YP_004892447.1| - 3.8e-05 23.5 0.0 7.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|352681923|ref|YP_004892447.1| - 5.9e-05 22.6 0.1 0.00015 21.3 0.1 1.7 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|352681923|ref|YP_004892447.1| - 0.0019 18.2 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|352681923|ref|YP_004892447.1| - 0.0022 17.3 0.4 0.0022 17.3 0.4 1.7 2 0 0 2 2 2 1 Transcription factor zinc-finger FYDLN_acid PF09538.10 gi|352681923|ref|YP_004892447.1| - 0.009 16.7 0.8 0.01 16.5 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) DUF2458 PF10454.9 gi|352681923|ref|YP_004892447.1| - 0.011 15.4 0.5 0.012 15.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) zinc_ribbon_2 PF13240.6 gi|352681923|ref|YP_004892447.1| - 0.02 14.6 1.4 0.12 12.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|352681923|ref|YP_004892447.1| - 0.047 13.8 0.4 0.065 13.4 0.3 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.6 gi|352681923|ref|YP_004892447.1| - 0.088 12.2 0.1 0.7 9.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|352681923|ref|YP_004892447.1| - 0.3 11.5 4.9 0.43 11.0 0.6 2.8 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 TPP_enzyme_C PF02775.21 gi|352681924|ref|YP_004892448.1| - 4.3e-20 72.1 0.1 1.8e-19 70.0 0.1 2.2 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|352681924|ref|YP_004892448.1| - 1.9e-11 44.2 0.1 3.2e-11 43.4 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|352681924|ref|YP_004892448.1| - 2.5e-11 42.9 11.1 3.5e-08 32.9 2.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.18 gi|352681924|ref|YP_004892448.1| - 1.1e-08 34.9 2.9 0.00088 18.9 0.2 2.8 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_2 PF12797.7 gi|352681924|ref|YP_004892448.1| - 2.9e-08 33.3 10.9 9e-05 22.3 1.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352681924|ref|YP_004892448.1| - 1.3e-06 28.2 18.1 3.5e-06 26.8 2.2 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352681924|ref|YP_004892448.1| - 1.7e-05 24.8 8.1 3.1e-05 24.0 8.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352681924|ref|YP_004892448.1| - 9.8e-05 22.4 6.5 0.00096 19.2 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352681924|ref|YP_004892448.1| - 0.00016 22.2 9.8 0.0051 17.4 3.4 2.4 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352681924|ref|YP_004892448.1| - 0.001 20.0 5.9 0.0012 19.7 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|352681924|ref|YP_004892448.1| - 0.005 17.4 6.3 0.0052 17.3 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|352681924|ref|YP_004892448.1| - 0.0055 16.8 4.6 0.01 15.9 4.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352681924|ref|YP_004892448.1| - 0.012 16.3 8.3 0.94 10.3 1.2 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_9 PF13187.6 gi|352681924|ref|YP_004892448.1| - 0.014 15.5 11.0 0.017 15.2 3.0 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain E1_dh PF00676.20 gi|352681924|ref|YP_004892448.1| - 0.06 12.3 0.0 0.1 11.6 0.0 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Fer4_13 PF13370.6 gi|352681924|ref|YP_004892448.1| - 5.6 7.6 12.0 14 6.3 2.4 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I POR PF01558.18 gi|352681925|ref|YP_004892449.1| - 5.1e-32 111.3 0.4 6.5e-32 111.0 0.4 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase RIO1 PF01163.22 gi|352681926|ref|YP_004892450.1| - 8.1e-51 172.3 0.0 1.1e-50 171.8 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|352681926|ref|YP_004892450.1| - 0.0001 21.8 0.0 0.00016 21.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|352681926|ref|YP_004892450.1| - 0.023 14.7 0.2 0.42 10.5 0.1 2.3 1 1 0 2 2 2 0 Phosphotransferase enzyme family Kdo PF06293.14 gi|352681926|ref|YP_004892450.1| - 0.11 11.9 0.0 0.48 9.8 0.0 1.9 1 1 1 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family KH_1 PF00013.29 gi|352681927|ref|YP_004892451.1| - 0.0001 22.1 0.2 0.00034 20.4 0.1 2.0 2 1 0 2 2 2 1 KH domain Cytochrom_B559a PF00284.20 gi|352681927|ref|YP_004892451.1| - 0.051 13.3 0.2 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit Ribosomal_S3Ae PF01015.18 gi|352681928|ref|YP_004892452.1| - 9.2e-55 185.4 0.0 1.1e-54 185.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Gtr1_RagA PF04670.12 gi|352681928|ref|YP_004892452.1| - 0.048 13.0 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region NapD PF03927.13 gi|352681929|ref|YP_004892453.1| - 0.014 15.4 0.5 0.034 14.2 0.0 1.7 1 1 1 2 2 2 0 NapD protein Ribosomal_S13_N PF08069.12 gi|352681931|ref|YP_004892455.1| - 1.5e-24 85.8 0.0 3.2e-24 84.7 0.0 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|352681931|ref|YP_004892455.1| - 1.7e-14 53.8 0.5 2.5e-14 53.2 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 CMAS PF02353.20 gi|352681932|ref|YP_004892456.1| - 2.8e-07 30.1 0.0 3.5e-07 29.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 gi|352681932|ref|YP_004892456.1| - 4.3e-06 26.4 0.0 4.8e-05 23.0 0.0 2.2 1 1 0 1 1 1 1 Histone methylation protein DOT1 HTH_47 PF16221.5 gi|352681932|ref|YP_004892456.1| - 3.3e-05 23.4 0.0 6e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 winged helix-turn-helix Methyltransf_31 PF13847.6 gi|352681932|ref|YP_004892456.1| - 0.00015 21.6 0.0 0.00019 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TFIIE_alpha PF02002.17 gi|352681932|ref|YP_004892456.1| - 0.0012 18.6 0.1 0.0037 17.1 0.1 1.8 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|352681932|ref|YP_004892456.1| - 0.0015 18.4 0.0 0.0037 17.1 0.0 1.6 2 0 0 2 2 1 1 MarR family Methyltransf_25 PF13649.6 gi|352681932|ref|YP_004892456.1| - 0.0018 19.0 0.0 0.0032 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TrmB PF01978.19 gi|352681932|ref|YP_004892456.1| - 0.002 18.0 0.1 0.0041 17.0 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PCMT PF01135.19 gi|352681932|ref|YP_004892456.1| - 0.0059 16.4 0.0 0.0086 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Rrf2 PF02082.20 gi|352681932|ref|YP_004892456.1| - 0.0092 16.3 0.1 0.03 14.7 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator MetW PF07021.12 gi|352681932|ref|YP_004892456.1| - 0.011 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_4 PF02390.17 gi|352681932|ref|YP_004892456.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase HTH_24 PF13412.6 gi|352681932|ref|YP_004892456.1| - 0.016 14.7 0.1 0.044 13.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|352681932|ref|YP_004892456.1| - 0.033 14.1 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|352681932|ref|YP_004892456.1| - 0.039 13.8 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r3 PF04539.16 gi|352681932|ref|YP_004892456.1| - 0.042 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-70 region 3 NPR2 PF06218.11 gi|352681932|ref|YP_004892456.1| - 0.043 12.6 0.0 0.06 12.1 0.0 1.1 1 0 0 1 1 1 0 Nitrogen permease regulator 2 HTH_Crp_2 PF13545.6 gi|352681932|ref|YP_004892456.1| - 0.043 13.8 0.0 0.097 12.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|352681932|ref|YP_004892456.1| - 0.088 12.9 0.0 0.23 11.6 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|352681932|ref|YP_004892456.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|352681932|ref|YP_004892456.1| - 0.13 12.8 0.0 0.29 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Methyltransf_32 PF13679.6 gi|352681932|ref|YP_004892456.1| - 0.13 12.2 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain SgrR_N PF12793.7 gi|352681932|ref|YP_004892456.1| - 0.16 12.2 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term RPA_C PF08784.11 gi|352681932|ref|YP_004892456.1| - 0.19 12.4 0.0 0.31 11.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HrcA_DNA-bdg PF03444.15 gi|352681932|ref|YP_004892456.1| - 0.22 11.2 0.9 0.45 10.2 0.2 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DS PF01916.17 gi|352681933|ref|YP_004892457.1| - 3.1e-88 295.8 0.0 3.5e-88 295.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glycos_transf_4 PF00953.21 gi|352681934|ref|YP_004892458.1| - 7.5e-25 87.8 11.6 1.7e-24 86.6 11.6 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 4 Erythrovirus_X PF06795.11 gi|352681934|ref|YP_004892458.1| - 0.034 14.4 0.2 0.085 13.2 0.2 1.6 1 0 0 1 1 1 0 Erythrovirus X protein DUF1980 PF09323.10 gi|352681935|ref|YP_004892459.1| - 0.4 10.6 1.7 0.44 10.5 1.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Ras PF00071.22 gi|352681936|ref|YP_004892460.1| - 1.3e-07 31.4 0.1 1e-06 28.5 0.1 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|352681936|ref|YP_004892460.1| - 1e-05 25.1 0.0 1.1e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.23 gi|352681936|ref|YP_004892460.1| - 4.6e-05 23.5 0.0 6.3e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|352681936|ref|YP_004892460.1| - 7.8e-05 22.5 0.0 0.00021 21.1 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|352681936|ref|YP_004892460.1| - 0.00039 20.0 0.0 0.001 18.6 0.0 1.6 1 1 0 1 1 1 1 Ferrous iron transport protein B Viral_helicase1 PF01443.18 gi|352681936|ref|YP_004892460.1| - 0.19 11.4 0.0 0.26 11.0 0.0 1.1 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Hydrolase_3 PF08282.12 gi|352681938|ref|YP_004892462.1| - 4.9e-29 101.8 0.0 5.9e-15 55.7 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|352681938|ref|YP_004892462.1| - 4.2e-09 36.3 0.0 7.2e-09 35.5 0.0 1.3 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|352681938|ref|YP_004892462.1| - 3e-08 34.3 0.2 0.0045 17.4 0.0 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|352681938|ref|YP_004892462.1| - 1.3e-06 28.8 0.0 0.027 14.7 0.0 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|352681938|ref|YP_004892462.1| - 0.016 15.3 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase ETF PF01012.21 gi|352681939|ref|YP_004892463.1| - 3.5e-43 147.6 0.1 6.2e-43 146.8 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|352681939|ref|YP_004892463.1| - 3.8e-34 116.6 0.9 7e-34 115.7 0.9 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.22 gi|352681939|ref|YP_004892463.1| - 0.024 14.4 0.8 0.38 10.5 0.8 2.5 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain ETF PF01012.21 gi|352681940|ref|YP_004892464.1| - 6.3e-38 130.5 0.1 8e-38 130.1 0.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Fer4_2 PF12797.7 gi|352681941|ref|YP_004892465.1| - 5e-08 32.6 11.6 3.6e-05 23.6 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|352681941|ref|YP_004892465.1| - 5.5e-08 32.9 2.7 7.1e-08 32.5 2.7 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_7 PF12838.7 gi|352681941|ref|YP_004892465.1| - 1.8e-06 28.5 7.2 0.00038 21.0 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|352681941|ref|YP_004892465.1| - 6.8e-06 26.1 8.3 9.2e-06 25.7 8.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352681941|ref|YP_004892465.1| - 7.6e-05 22.7 16.6 0.00081 19.5 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352681941|ref|YP_004892465.1| - 7.9e-05 22.3 2.8 7.9e-05 22.3 2.8 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352681941|ref|YP_004892465.1| - 0.00034 20.7 15.1 0.00057 20.0 15.1 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352681941|ref|YP_004892465.1| - 0.006 17.0 3.2 0.006 17.0 3.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352681941|ref|YP_004892465.1| - 0.025 14.7 2.4 0.025 14.7 2.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|352681941|ref|YP_004892465.1| - 0.052 14.0 3.3 0.052 14.0 3.3 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352681941|ref|YP_004892465.1| - 0.056 14.4 1.5 0.056 14.4 1.5 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|352681941|ref|YP_004892465.1| - 0.068 14.1 4.4 0.068 14.1 4.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|352681941|ref|YP_004892465.1| - 0.081 13.5 4.3 0.081 13.5 4.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|352681941|ref|YP_004892465.1| - 0.27 11.4 15.4 0.65 10.2 15.4 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|352681941|ref|YP_004892465.1| - 7.1 6.4 15.1 0.7 9.7 5.5 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.24 gi|352681942|ref|YP_004892466.1| - 3.4e-15 56.5 0.9 1.6e-08 34.5 0.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|352681942|ref|YP_004892466.1| - 1.9e-12 46.9 0.6 2.2e-09 36.9 0.2 2.2 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|352681942|ref|YP_004892466.1| - 8.6e-10 38.4 0.3 1.5e-06 27.7 0.2 2.8 2 1 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|352681942|ref|YP_004892466.1| - 6.2e-09 36.0 0.1 1.7e-08 34.5 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|352681942|ref|YP_004892466.1| - 6.3e-09 35.5 0.0 2.2e-08 33.7 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|352681942|ref|YP_004892466.1| - 1.1e-08 34.6 0.1 4e-08 32.8 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|352681942|ref|YP_004892466.1| - 3.7e-08 33.2 0.0 6.2e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|352681942|ref|YP_004892466.1| - 1.6e-07 30.4 0.8 2.7e-07 29.7 0.5 1.5 2 0 0 2 2 2 1 HI0933-like protein Trp_halogenase PF04820.14 gi|352681942|ref|YP_004892466.1| - 1.3e-06 27.5 0.8 0.0013 17.7 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|352681942|ref|YP_004892466.1| - 5.5e-06 25.8 0.4 1.1e-05 24.9 0.4 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|352681942|ref|YP_004892466.1| - 0.00012 21.2 0.3 0.00033 19.8 0.3 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 gi|352681942|ref|YP_004892466.1| - 0.00039 19.6 0.5 0.00057 19.1 0.5 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|352681942|ref|YP_004892466.1| - 0.0017 17.7 0.0 0.003 16.9 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|352681942|ref|YP_004892466.1| - 0.0018 18.8 0.1 0.0086 16.6 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|352681942|ref|YP_004892466.1| - 0.0066 16.5 0.3 0.011 15.7 0.3 1.6 1 1 0 1 1 1 1 FAD-NAD(P)-binding adh_short PF00106.25 gi|352681942|ref|YP_004892466.1| - 0.07 12.6 0.4 0.25 10.8 0.2 1.8 2 0 0 2 2 2 0 short chain dehydrogenase ThiF PF00899.21 gi|352681942|ref|YP_004892466.1| - 0.14 11.5 0.0 2.1 7.7 0.2 2.2 2 1 0 2 2 2 0 ThiF family GDI PF00996.18 gi|352681942|ref|YP_004892466.1| - 0.16 10.5 0.0 4.3 5.7 0.0 2.1 1 1 0 2 2 2 0 GDP dissociation inhibitor MoaE PF02391.17 gi|352681943|ref|YP_004892467.1| - 1.9e-25 89.3 0.1 2.6e-25 88.9 0.1 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|352681943|ref|YP_004892467.1| - 3.2e-17 62.9 0.0 6.4e-17 62.0 0.0 1.5 1 0 0 1 1 1 1 ThiS family LAL_C2 PF18603.1 gi|352681943|ref|YP_004892467.1| - 0.0027 17.8 0.3 0.012 15.8 0.3 1.9 1 1 0 1 1 1 1 L-amino acid ligase C-terminal domain 2 Ub-Mut7C PF14451.6 gi|352681943|ref|YP_004892467.1| - 0.0043 16.9 0.1 0.011 15.5 0.0 1.7 2 0 0 2 2 2 1 Mut7-C ubiquitin Delta_lysin PF05372.11 gi|352681943|ref|YP_004892467.1| - 0.073 12.4 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 Delta lysin family ThiS-like PF14453.6 gi|352681943|ref|YP_004892467.1| - 0.1 12.7 0.0 0.42 10.7 0.0 2.0 2 0 0 2 2 2 0 ThiS-like ubiquitin MMR_HSR1 PF01926.23 gi|352681945|ref|YP_004892469.1| - 8.1e-17 61.3 0.1 5e-14 52.4 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|352681945|ref|YP_004892469.1| - 9.2e-11 41.5 0.1 4e-05 23.2 0.0 2.1 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|352681945|ref|YP_004892469.1| - 1.5e-09 38.1 0.1 0.0001 22.4 0.0 3.1 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|352681945|ref|YP_004892469.1| - 5.1e-07 29.7 0.0 1.1e-06 28.7 0.0 1.5 1 1 0 1 1 1 1 RsgA GTPase PAS_8 PF13188.7 gi|352681945|ref|YP_004892469.1| - 6.6e-05 22.8 0.1 0.00032 20.6 0.0 2.1 2 0 0 2 2 2 1 PAS domain GTP_EFTU PF00009.27 gi|352681945|ref|YP_004892469.1| - 0.00026 20.6 0.1 0.0041 16.7 0.1 2.6 3 1 0 3 3 3 1 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|352681945|ref|YP_004892469.1| - 0.013 14.9 0.0 0.037 13.5 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family AIG1 PF04548.16 gi|352681945|ref|YP_004892469.1| - 0.018 14.4 0.0 0.059 12.7 0.0 1.8 2 0 0 2 2 2 0 AIG1 family AAA_18 PF13238.6 gi|352681945|ref|YP_004892469.1| - 0.026 15.1 0.0 0.051 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|352681945|ref|YP_004892469.1| - 0.15 11.0 0.0 0.3 10.0 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|352681945|ref|YP_004892469.1| - 0.16 12.3 0.0 0.37 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AMMECR1 PF01871.17 gi|352681946|ref|YP_004892470.1| - 1.7e-44 151.3 0.0 2e-44 151.1 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 PhnA_Zn_Ribbon PF08274.12 gi|352681947|ref|YP_004892471.1| - 0.011 15.6 0.0 0.011 15.6 0.0 2.0 3 1 0 3 3 3 0 PhnA Zinc-Ribbon DUF4428 PF14471.6 gi|352681947|ref|YP_004892471.1| - 0.017 15.0 0.1 0.033 14.1 0.1 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-C4_ClpX PF06689.13 gi|352681947|ref|YP_004892471.1| - 0.19 11.7 4.5 0.21 11.5 2.5 2.1 2 1 0 2 2 2 0 ClpX C4-type zinc finger Tnp_zf-ribbon_2 PF13842.6 gi|352681947|ref|YP_004892471.1| - 0.64 10.9 6.3 46 4.9 6.3 2.4 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon ADD_ATRX PF17981.1 gi|352681947|ref|YP_004892471.1| - 0.65 9.9 7.2 0.21 11.5 3.4 2.2 1 1 1 2 2 2 0 Cysteine Rich ADD domain zf-H2C2_2 PF13465.6 gi|352681947|ref|YP_004892471.1| - 2.9 8.5 6.8 1.4 9.5 0.3 2.9 3 0 0 3 3 3 0 Zinc-finger double domain Methyltr_RsmB-F PF01189.17 gi|352681948|ref|YP_004892472.1| - 3.6e-23 82.3 0.0 1e-22 80.8 0.0 1.6 2 0 0 2 2 2 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|352681948|ref|YP_004892472.1| - 4.8e-14 52.1 0.4 7.9e-14 51.4 0.4 1.3 1 0 0 1 1 1 1 PUA domain Methyltransf_15 PF09445.10 gi|352681948|ref|YP_004892472.1| - 0.0005 19.7 0.0 0.00067 19.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|352681948|ref|YP_004892472.1| - 0.023 15.4 0.0 0.077 13.7 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain PPAK PF02818.15 gi|352681948|ref|YP_004892472.1| - 0.064 13.4 2.9 0.11 12.6 2.9 1.4 1 0 0 1 1 1 0 PPAK motif Methyltr_RsmF_N PF17125.5 gi|352681948|ref|YP_004892472.1| - 0.07 13.6 0.1 0.28 11.7 0.0 1.9 2 0 0 2 2 2 0 N-terminal domain of 16S rRNA methyltransferase RsmF PUA_3 PF17785.1 gi|352681948|ref|YP_004892472.1| - 0.15 11.8 0.0 0.4 10.5 0.0 1.6 1 0 0 1 1 1 0 PUA-like domain CopD PF05425.13 gi|352681949|ref|YP_004892473.1| - 0.12 12.8 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 Copper resistance protein D IF-2B PF01008.17 gi|352681950|ref|YP_004892474.1| - 3.8e-66 223.2 0.0 4.3e-66 223.0 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family GATase_6 PF13522.6 gi|352681950|ref|YP_004892474.1| - 0.15 12.2 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 Glutamine amidotransferase domain NucS PF01939.16 gi|352681952|ref|YP_004892476.1| - 0.0017 17.8 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Endonuclease NucS UPF0102 PF02021.17 gi|352681952|ref|YP_004892476.1| - 0.0027 17.9 0.0 0.0046 17.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF2567 PF10821.8 gi|352681952|ref|YP_004892476.1| - 0.024 14.7 0.5 0.033 14.3 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2567) DUF3209 PF11483.8 gi|352681952|ref|YP_004892476.1| - 0.027 14.9 0.2 0.098 13.1 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3209) DUF4143 PF13635.6 gi|352681952|ref|YP_004892476.1| - 0.039 14.1 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Gasdermin_C PF17708.1 gi|352681952|ref|YP_004892476.1| - 0.15 12.2 0.3 0.22 11.6 0.3 1.3 1 0 0 1 1 1 0 Gasdermin PUB domain ThiP_synth PF10120.9 gi|352681953|ref|YP_004892477.1| - 4.9e-30 104.3 0.3 7.2e-30 103.8 0.3 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_37 PF13744.6 gi|352681953|ref|YP_004892477.1| - 0.019 14.9 0.0 0.038 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Topo-VIb_trans PF09239.11 gi|352681954|ref|YP_004892478.1| - 2.8e-18 66.3 0.0 4.8e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|352681954|ref|YP_004892478.1| - 2.8e-12 47.1 0.0 4.4e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|352681954|ref|YP_004892478.1| - 1.3e-09 38.0 0.0 1.9e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|352681954|ref|YP_004892478.1| - 0.047 12.5 0.0 0.069 11.9 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Topo-VIb_trans PF09239.11 gi|352681955|ref|YP_004892479.1| - 8.4e-19 68.0 0.4 1.3e-18 67.3 0.1 1.5 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer DASH_Dad3 PF08656.10 gi|352681955|ref|YP_004892479.1| - 0.036 14.2 0.7 0.036 14.2 0.7 1.5 2 0 0 2 2 2 0 DASH complex subunit Dad3 UPF0122 PF04297.14 gi|352681955|ref|YP_004892479.1| - 0.062 13.5 1.4 0.093 13.0 1.1 1.4 1 1 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TP6A_N PF04406.14 gi|352681956|ref|YP_004892480.1| - 1.2e-20 73.2 0.0 2.4e-20 72.3 0.0 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|352681956|ref|YP_004892480.1| - 0.0097 15.8 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) PhoU PF01895.19 gi|352681957|ref|YP_004892481.1| - 7e-18 64.9 4.7 7e-18 64.9 4.7 2.1 2 0 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|352681957|ref|YP_004892481.1| - 2.5e-11 43.2 0.2 8.3e-11 41.6 0.2 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Spc42p PF11544.8 gi|352681957|ref|YP_004892481.1| - 0.015 15.2 0.1 0.032 14.2 0.1 1.5 1 0 0 1 1 1 0 Spindle pole body component Spc42p eIF-1a PF01176.19 gi|352681957|ref|YP_004892481.1| - 0.023 14.5 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 TOBE PF03459.17 gi|352681957|ref|YP_004892481.1| - 0.024 14.9 0.0 0.051 13.9 0.0 1.5 1 0 0 1 1 1 0 TOBE domain DUF816 PF05674.12 gi|352681957|ref|YP_004892481.1| - 0.026 14.4 1.7 0.15 12.0 0.0 2.1 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF816) PrmA PF06325.13 gi|352681958|ref|YP_004892482.1| - 0.011 15.2 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|352681958|ref|YP_004892482.1| - 0.013 15.0 0.1 0.061 12.9 0.1 1.9 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|352681958|ref|YP_004892482.1| - 0.023 15.3 0.1 0.067 13.8 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain DUF3419 PF11899.8 gi|352681958|ref|YP_004892482.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Methyltransf_23 PF13489.6 gi|352681958|ref|YP_004892482.1| - 0.16 11.8 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352681958|ref|YP_004892482.1| - 0.17 12.6 0.0 0.34 11.6 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CitX PF03802.14 gi|352681958|ref|YP_004892482.1| - 0.21 11.3 0.7 0.36 10.6 0.7 1.3 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase HTH_24 PF13412.6 gi|352681959|ref|YP_004892483.1| - 0.0024 17.4 0.5 0.0047 16.4 0.5 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|352681959|ref|YP_004892483.1| - 0.0038 17.1 0.2 0.008 16.1 0.2 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|352681959|ref|YP_004892483.1| - 0.0043 17.1 0.0 0.0088 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|352681959|ref|YP_004892483.1| - 0.0079 16.0 1.3 0.01 15.6 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|352681959|ref|YP_004892483.1| - 0.011 15.6 0.1 0.026 14.5 0.1 1.5 1 0 0 1 1 1 0 MarR family DUF4576 PF15144.6 gi|352681959|ref|YP_004892483.1| - 0.031 14.1 0.7 8.4 6.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4576) HTH_34 PF13601.6 gi|352681959|ref|YP_004892483.1| - 0.065 13.4 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|352681959|ref|YP_004892483.1| - 0.099 12.4 0.2 0.18 11.6 0.2 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain CBP_BcsG PF11658.8 gi|352681959|ref|YP_004892483.1| - 2.2 6.6 4.6 2.9 6.2 4.6 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsG Alba PF01918.21 gi|352681960|ref|YP_004892484.1| - 4.6e-14 52.0 0.7 6.4e-14 51.5 0.7 1.2 1 0 0 1 1 1 1 Alba Rpp20 PF12328.8 gi|352681960|ref|YP_004892484.1| - 0.11 12.4 1.8 0.34 10.9 1.8 1.8 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Arcadin_1 PF18653.1 gi|352681961|ref|YP_004892485.1| - 5.5e-42 142.3 0.5 6e-42 142.2 0.5 1.0 1 0 0 1 1 1 1 Arcadin 1 MazE_antitoxin PF04014.18 gi|352681961|ref|YP_004892485.1| - 0.025 14.5 0.6 0.044 13.7 0.6 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin Actin PF00022.19 gi|352681962|ref|YP_004892486.1| - 1.8e-06 26.9 0.0 0.00044 19.0 0.0 2.6 2 1 0 2 2 2 2 Actin CBP_BcsR PF10945.8 gi|352681962|ref|YP_004892486.1| - 0.042 13.3 0.0 0.094 12.2 0.0 1.5 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsR Pox_P4A PF03395.14 gi|352681963|ref|YP_004892487.1| - 0.024 12.3 0.1 0.14 9.8 0.0 1.8 2 0 0 2 2 2 0 Poxvirus P4A protein DUF3288 PF11691.8 gi|352681964|ref|YP_004892488.1| - 0.015 15.4 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3288) RGS-like PF09128.11 gi|352681964|ref|YP_004892488.1| - 0.019 14.7 0.0 0.022 14.5 0.0 1.0 1 0 0 1 1 1 0 Regulator of G protein signalling-like domain Band_7 PF01145.25 gi|352681964|ref|YP_004892488.1| - 0.032 14.2 0.0 0.036 14.1 0.0 1.1 1 0 0 1 1 1 0 SPFH domain / Band 7 family GlutR_dimer PF00745.20 gi|352681964|ref|YP_004892488.1| - 0.078 13.4 0.0 0.086 13.3 0.0 1.1 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain SMC_N PF02463.19 gi|352681965|ref|YP_004892489.1| - 2.6e-19 69.6 0.0 5.3e-19 68.5 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|352681965|ref|YP_004892489.1| - 1.8e-12 48.2 12.1 1.8e-12 48.2 12.1 4.8 1 1 1 2 2 1 1 AAA domain AAA_21 PF13304.6 gi|352681965|ref|YP_004892489.1| - 3.7e-12 46.7 13.5 1.1e-06 28.7 1.4 3.4 3 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|352681965|ref|YP_004892489.1| - 8.1e-12 45.5 24.5 4.7e-05 23.3 20.2 4.1 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|352681965|ref|YP_004892489.1| - 4e-05 23.3 0.0 7.2e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF948 PF06103.11 gi|352681965|ref|YP_004892489.1| - 0.00044 20.4 8.5 5.7 7.3 0.0 5.6 6 1 0 6 6 5 0 Bacterial protein of unknown function (DUF948) Sec34 PF04136.15 gi|352681965|ref|YP_004892489.1| - 0.00054 19.9 22.8 0.34 10.8 0.7 5.4 4 1 1 5 5 5 2 Sec34-like family NPV_P10 PF05531.12 gi|352681965|ref|YP_004892489.1| - 0.001 19.5 12.5 0.38 11.3 0.1 6.0 4 2 2 6 6 6 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|352681965|ref|YP_004892489.1| - 0.0016 18.5 13.0 0.84 9.7 0.0 5.9 4 2 1 5 5 5 1 Baculovirus polyhedron envelope protein, PEP, C terminus HAUS-augmin3 PF14932.6 gi|352681965|ref|YP_004892489.1| - 0.003 17.2 2.1 0.003 17.2 2.1 3.9 3 1 1 4 4 4 1 HAUS augmin-like complex subunit 3 Spc7 PF08317.11 gi|352681965|ref|YP_004892489.1| - 0.0066 15.4 38.9 0.042 12.7 2.9 4.4 3 1 0 4 4 4 2 Spc7 kinetochore protein Filament PF00038.21 gi|352681965|ref|YP_004892489.1| - 0.0076 15.9 41.8 0.012 15.2 9.4 4.2 3 1 1 4 4 4 2 Intermediate filament protein DUF724 PF05266.14 gi|352681965|ref|YP_004892489.1| - 0.011 15.5 1.5 0.011 15.5 1.5 4.0 3 1 0 3 3 3 0 Protein of unknown function (DUF724) APG6_N PF17675.1 gi|352681965|ref|YP_004892489.1| - 0.011 16.2 50.7 0.066 13.7 4.5 4.7 3 1 1 4 4 4 0 Apg6 coiled-coil region ABC_tran PF00005.27 gi|352681965|ref|YP_004892489.1| - 0.012 16.1 0.1 0.012 16.1 0.1 4.0 2 2 0 2 2 2 0 ABC transporter DUF812 PF05667.11 gi|352681965|ref|YP_004892489.1| - 0.017 14.1 37.9 0.1 11.5 2.6 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF812) RsgA_GTPase PF03193.16 gi|352681965|ref|YP_004892489.1| - 0.017 15.0 0.0 0.13 12.2 0.0 2.5 1 0 0 1 1 1 0 RsgA GTPase TMPIT PF07851.13 gi|352681965|ref|YP_004892489.1| - 0.022 14.0 0.7 0.022 14.0 0.7 4.1 3 1 2 5 5 5 0 TMPIT-like protein Tup_N PF08581.10 gi|352681965|ref|YP_004892489.1| - 0.027 14.8 1.0 0.027 14.8 1.0 6.6 4 2 2 7 7 6 0 Tup N-terminal DUF3939 PF13075.6 gi|352681965|ref|YP_004892489.1| - 0.029 14.4 1.7 0.085 12.9 0.1 2.6 3 0 0 3 3 2 0 Protein of unknown function (DUF3939) AAA_27 PF13514.6 gi|352681965|ref|YP_004892489.1| - 0.039 13.5 0.0 0.039 13.5 0.0 3.7 4 1 0 4 4 4 0 AAA domain DASH_Dad3 PF08656.10 gi|352681965|ref|YP_004892489.1| - 0.04 14.0 0.4 0.04 14.0 0.4 7.6 6 2 1 7 7 6 0 DASH complex subunit Dad3 GAS PF13851.6 gi|352681965|ref|YP_004892489.1| - 0.042 13.2 46.9 0.073 12.4 2.6 5.5 3 1 2 5 5 5 0 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|352681965|ref|YP_004892489.1| - 0.073 13.1 0.1 0.073 13.1 0.1 5.8 4 2 2 6 6 5 0 Protein of unknown function (DUF1664) MMR_HSR1 PF01926.23 gi|352681965|ref|YP_004892489.1| - 0.08 13.0 0.2 0.52 10.4 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase Prominin PF05478.11 gi|352681965|ref|YP_004892489.1| - 0.091 10.7 19.3 0.071 11.1 0.2 3.2 3 0 0 3 3 3 0 Prominin Nsp1_C PF05064.13 gi|352681965|ref|YP_004892489.1| - 0.11 12.2 25.5 0.6 9.9 0.9 5.6 5 1 1 6 6 5 0 Nsp1-like C-terminal region DUF4795 PF16043.5 gi|352681965|ref|YP_004892489.1| - 0.14 11.8 29.9 0.55 9.8 0.5 3.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4795) SesA PF17107.5 gi|352681965|ref|YP_004892489.1| - 0.24 11.6 18.9 0.73 10.0 3.0 5.3 4 2 2 6 6 6 0 N-terminal domain on NACHT_NTPase and P-loop NTPases BLOC1_2 PF10046.9 gi|352681965|ref|YP_004892489.1| - 0.3 11.4 37.6 0.56 10.5 1.3 7.4 3 3 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2587 PF10759.9 gi|352681965|ref|YP_004892489.1| - 0.41 10.1 6.8 0.056 13.0 1.3 2.4 2 0 0 2 2 1 0 Protein of unknown function (DUF2587) Seryl_tRNA_N PF02403.22 gi|352681965|ref|YP_004892489.1| - 0.53 10.5 37.2 2.3 8.5 6.7 5.2 3 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF5082 PF16888.5 gi|352681965|ref|YP_004892489.1| - 0.55 10.5 28.6 2.5 8.4 0.6 5.7 3 1 3 6 6 6 0 Domain of unknown function (DUF5082) AATF-Che1 PF13339.6 gi|352681965|ref|YP_004892489.1| - 0.59 10.8 12.3 0.2 12.4 0.8 4.1 2 2 1 3 3 2 0 Apoptosis antagonizing transcription factor TetR PF13972.6 gi|352681965|ref|YP_004892489.1| - 0.74 9.5 9.1 8.4 6.1 0.3 4.0 4 0 0 4 4 3 0 Bacterial transcriptional repressor DASH_Dam1 PF08653.10 gi|352681965|ref|YP_004892489.1| - 0.88 9.4 8.3 2.2 8.1 0.2 5.4 5 1 1 6 6 5 0 DASH complex subunit Dam1 IMS PF00817.20 gi|352681965|ref|YP_004892489.1| - 1.1 9.3 4.8 8.1 6.4 3.3 2.8 2 1 0 2 2 1 0 impB/mucB/samB family T2SSF PF00482.23 gi|352681965|ref|YP_004892489.1| - 2.1 8.3 12.7 0.23 11.4 0.2 4.0 4 0 0 4 4 3 0 Type II secretion system (T2SS), protein F T6SS_VipA PF05591.12 gi|352681965|ref|YP_004892489.1| - 3.3 7.5 14.0 0.49 10.2 2.7 3.2 2 0 0 2 2 2 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 FUSC PF04632.12 gi|352681965|ref|YP_004892489.1| - 3.5 6.0 10.5 5.7 5.3 5.9 2.4 2 0 0 2 2 2 0 Fusaric acid resistance protein family Leu_zip PF15294.6 gi|352681965|ref|YP_004892489.1| - 3.6 7.0 34.9 0.024 14.2 1.3 3.7 3 1 0 3 3 3 0 Leucine zipper AAA_22 PF13401.6 gi|352681965|ref|YP_004892489.1| - 3.8 7.8 0.0 3.8 7.8 0.0 3.7 4 1 0 4 4 3 0 AAA domain T3SSipB PF16535.5 gi|352681965|ref|YP_004892489.1| - 3.9 7.9 5.5 16 5.9 0.2 3.4 3 0 0 3 3 3 0 Type III cell invasion protein SipB Osmo_CC PF08946.10 gi|352681965|ref|YP_004892489.1| - 5.9 7.2 14.7 0.092 13.0 1.1 4.2 3 0 0 3 3 2 0 Osmosensory transporter coiled coil DUF4250 PF14056.6 gi|352681965|ref|YP_004892489.1| - 6.2 6.9 8.2 9.7 6.2 0.2 4.9 5 1 0 5 5 3 0 Domain of unknown function (DUF4250) eIF3_N PF09440.10 gi|352681965|ref|YP_004892489.1| - 8.1 6.9 17.2 7.2 7.1 1.2 4.7 2 1 2 4 4 4 0 eIF3 subunit 6 N terminal domain AAA_16 PF13191.6 gi|352681965|ref|YP_004892489.1| - 8.2 6.8 9.4 3.3 8.1 0.0 3.7 3 1 0 3 3 3 0 AAA ATPase domain ACP_PD PF04336.12 gi|352681965|ref|YP_004892489.1| - 9 6.8 14.2 19 5.8 0.5 5.3 3 2 2 5 5 5 0 Acyl carrier protein phosphodiesterase AbiH PF14253.6 gi|352681966|ref|YP_004892490.1| - 0.043 13.7 0.0 0.049 13.5 0.0 1.1 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH TrmB PF01978.19 gi|352681967|ref|YP_004892491.1| - 4.2e-21 74.6 1.7 1.3e-20 73.1 0.1 2.5 2 2 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|352681967|ref|YP_004892491.1| - 4.1e-08 32.6 0.0 8.3e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|352681967|ref|YP_004892491.1| - 2.8e-07 30.3 0.0 5.3e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|352681967|ref|YP_004892491.1| - 1.6e-06 27.8 0.5 4.7e-06 26.3 0.0 2.2 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|352681967|ref|YP_004892491.1| - 0.00011 22.2 0.1 0.0012 18.9 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|352681967|ref|YP_004892491.1| - 0.00017 21.9 0.0 0.0017 18.6 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_20 PF12840.7 gi|352681967|ref|YP_004892491.1| - 0.00017 21.5 0.1 0.00059 19.8 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|352681967|ref|YP_004892491.1| - 0.00052 19.8 0.0 0.00097 19.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.9 gi|352681967|ref|YP_004892491.1| - 0.00064 19.8 0.0 0.0016 18.5 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.12 gi|352681967|ref|YP_004892491.1| - 0.0023 17.8 0.0 0.0063 16.4 0.0 1.8 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|352681967|ref|YP_004892491.1| - 0.0025 17.7 0.1 0.0072 16.2 0.1 1.8 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|352681967|ref|YP_004892491.1| - 0.014 15.6 0.3 3.2 8.0 0.0 3.4 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|352681967|ref|YP_004892491.1| - 0.014 15.2 0.0 0.042 13.6 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain Dimerisation2 PF16864.5 gi|352681967|ref|YP_004892491.1| - 0.028 14.4 0.0 0.081 12.9 0.0 1.8 2 0 0 2 2 1 0 Dimerisation domain MarR PF01047.22 gi|352681967|ref|YP_004892491.1| - 0.048 13.6 0.0 0.14 12.1 0.0 1.8 2 0 0 2 2 2 0 MarR family FaeA PF04703.12 gi|352681967|ref|YP_004892491.1| - 0.055 13.8 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein HTH_Crp_2 PF13545.6 gi|352681967|ref|YP_004892491.1| - 0.062 13.3 0.0 0.22 11.5 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Radical_SAM PF04055.21 gi|352681968|ref|YP_004892492.1| - 5.8e-23 82.1 0.3 2.6e-22 80.0 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|352681968|ref|YP_004892492.1| - 1.9e-05 24.8 0.0 9.9e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|352681968|ref|YP_004892492.1| - 5.3e-05 23.5 0.0 0.00011 22.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ComA PF02679.15 gi|352681968|ref|YP_004892492.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) zf-Di19 PF05605.12 gi|352681968|ref|YP_004892492.1| - 3.1 8.2 6.0 6.2 7.2 0.1 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding DUF948 PF06103.11 gi|352681969|ref|YP_004892493.1| - 0.00045 20.4 8.7 1.3 9.4 4.8 4.2 2 1 0 3 3 3 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|352681969|ref|YP_004892493.1| - 0.003 17.6 3.8 3.2 7.8 0.3 4.3 3 1 2 5 5 5 1 Protein of unknown function (DUF1664) COG2 PF06148.11 gi|352681969|ref|YP_004892493.1| - 0.012 15.7 4.6 8.4 6.5 0.3 3.7 1 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Top6b_C PF18000.1 gi|352681969|ref|YP_004892493.1| - 0.021 15.0 0.0 0.05 13.8 0.0 1.6 1 0 0 1 1 1 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HMMR_N PF15905.5 gi|352681969|ref|YP_004892493.1| - 0.026 14.0 0.3 0.041 13.3 0.3 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal SesA PF17107.5 gi|352681969|ref|YP_004892493.1| - 0.029 14.6 1.7 0.29 11.3 0.3 2.8 2 1 1 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases LXG PF04740.12 gi|352681969|ref|YP_004892493.1| - 0.057 13.1 6.0 2 8.1 3.8 2.3 1 1 0 2 2 2 0 LXG domain of WXG superfamily IFT57 PF10498.9 gi|352681969|ref|YP_004892493.1| - 0.076 12.0 2.4 0.15 11.0 2.1 1.6 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Spc7 PF08317.11 gi|352681969|ref|YP_004892493.1| - 0.15 10.9 1.7 0.29 10.0 1.1 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein ApoLp-III PF07464.11 gi|352681969|ref|YP_004892493.1| - 0.19 11.8 4.3 5.1 7.2 3.9 2.5 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) XhlA PF10779.9 gi|352681969|ref|YP_004892493.1| - 0.24 11.7 1.2 0.8 9.9 1.2 1.9 1 0 0 1 1 1 0 Haemolysin XhlA Laminin_II PF06009.12 gi|352681969|ref|YP_004892493.1| - 0.29 11.2 10.5 1.6 8.7 4.8 3.3 2 1 2 4 4 4 0 Laminin Domain II HAUS-augmin3 PF14932.6 gi|352681969|ref|YP_004892493.1| - 0.34 10.5 4.1 1.2 8.6 2.0 2.6 2 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 WEMBL PF05701.11 gi|352681969|ref|YP_004892493.1| - 0.87 8.2 5.1 0.99 8.0 4.6 1.3 1 1 0 1 1 1 0 Weak chloroplast movement under blue light NPV_P10 PF05531.12 gi|352681969|ref|YP_004892493.1| - 1.1 9.8 13.7 40 4.8 0.3 5.0 2 1 0 3 3 3 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|352681969|ref|YP_004892493.1| - 3 7.9 35.5 5.8 7.0 9.9 4.4 1 1 3 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus His_binding PF02098.16 gi|352681969|ref|YP_004892493.1| - 8.3 6.4 8.3 23 5.0 1.0 2.8 2 0 0 2 2 2 0 Tick histamine binding protein ABC_tran PF00005.27 gi|352681970|ref|YP_004892494.1| - 1.2e-30 106.8 0.0 1.7e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352681970|ref|YP_004892494.1| - 1.2e-13 51.5 0.4 6.5e-08 32.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352681970|ref|YP_004892494.1| - 0.00013 21.5 0.1 0.15 11.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352681970|ref|YP_004892494.1| - 0.00014 21.6 0.1 0.00025 20.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|352681970|ref|YP_004892494.1| - 0.00024 21.0 0.0 0.0005 20.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|352681970|ref|YP_004892494.1| - 0.0024 18.3 0.1 0.0045 17.4 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|352681970|ref|YP_004892494.1| - 0.0026 18.3 0.7 0.0047 17.4 0.3 1.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|352681970|ref|YP_004892494.1| - 0.005 16.6 0.0 0.023 14.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352681970|ref|YP_004892494.1| - 0.0094 16.2 0.4 0.066 13.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|352681970|ref|YP_004892494.1| - 0.011 15.3 0.7 0.23 11.0 0.1 2.6 2 1 1 3 3 3 0 AAA domain cobW PF02492.19 gi|352681970|ref|YP_004892494.1| - 0.033 13.8 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SSE PF00437.20 gi|352681970|ref|YP_004892494.1| - 0.054 12.5 0.0 0.082 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|352681970|ref|YP_004892494.1| - 0.07 13.4 0.0 0.24 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|352681970|ref|YP_004892494.1| - 0.071 12.3 0.1 0.44 9.7 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|352681970|ref|YP_004892494.1| - 0.081 13.1 0.0 0.096 12.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|352681970|ref|YP_004892494.1| - 0.083 12.6 0.1 0.23 11.1 0.0 1.7 3 0 0 3 3 3 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|352681970|ref|YP_004892494.1| - 0.086 11.6 0.6 4.5 6.0 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|352681970|ref|YP_004892494.1| - 0.14 12.4 0.1 0.31 11.3 0.1 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit KDGP_aldolase PF07071.11 gi|352681970|ref|YP_004892494.1| - 0.16 11.7 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 KDGP aldolase MacB_PCD PF12704.7 gi|352681971|ref|YP_004892495.1| - 7.5e-13 49.3 3.1 1.2e-12 48.7 3.1 1.3 1 0 0 1 1 1 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|352681971|ref|YP_004892495.1| - 2.5e-07 31.1 4.0 2.5e-07 31.1 4.0 3.4 3 1 0 3 3 3 1 FtsX-like permease family MMPL PF03176.15 gi|352681972|ref|YP_004892496.1| - 1.5e-65 221.4 36.7 1.7e-37 129.1 13.8 2.3 2 0 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|352681972|ref|YP_004892496.1| - 0.0073 16.2 6.2 0.0073 16.2 6.2 2.7 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation HAD_2 PF13419.6 gi|352681973|ref|YP_004892497.1| - 6.5e-16 58.9 0.0 7.6e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|352681973|ref|YP_004892497.1| - 2.1e-12 47.8 0.1 6.3e-12 46.2 0.1 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|352681973|ref|YP_004892497.1| - 3.2e-08 33.5 0.0 6.2e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|352681973|ref|YP_004892497.1| - 7.5e-06 26.5 0.5 1.7e-05 25.3 0.2 1.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Pyr_redox_2 PF07992.14 gi|352681974|ref|YP_004892498.1| - 8.4e-14 51.5 1.5 2.4e-13 50.0 0.2 2.3 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352681974|ref|YP_004892498.1| - 1.1e-07 32.3 1.7 0.0009 19.7 0.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|352681974|ref|YP_004892498.1| - 3.2e-07 30.5 0.5 0.00011 22.3 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|352681974|ref|YP_004892498.1| - 6.9e-06 25.4 6.3 6.3e-05 22.2 0.4 3.0 4 0 0 4 4 4 2 FAD binding domain DAO PF01266.24 gi|352681974|ref|YP_004892498.1| - 5.3e-05 23.0 2.1 0.00052 19.7 0.3 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|352681974|ref|YP_004892498.1| - 0.00025 20.4 0.1 0.0019 17.5 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|352681974|ref|YP_004892498.1| - 0.00027 20.2 0.1 0.00067 19.0 0.1 1.6 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|352681974|ref|YP_004892498.1| - 0.0014 18.0 0.4 0.35 10.1 0.9 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|352681974|ref|YP_004892498.1| - 0.0018 17.7 1.1 0.004 16.6 0.4 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|352681974|ref|YP_004892498.1| - 0.0027 16.8 1.4 0.0032 16.6 0.5 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|352681974|ref|YP_004892498.1| - 0.016 15.6 0.3 6.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding HI0933_like PF03486.14 gi|352681974|ref|YP_004892498.1| - 0.065 11.9 0.2 0.25 10.0 0.2 1.9 2 0 0 2 2 2 0 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|352681974|ref|YP_004892498.1| - 0.15 11.3 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|352681974|ref|YP_004892498.1| - 0.38 9.8 3.6 0.15 11.1 0.2 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A NERD PF08378.11 gi|352681975|ref|YP_004892499.1| - 0.0013 19.1 0.0 0.0019 18.6 0.0 1.3 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.12 gi|352681975|ref|YP_004892499.1| - 0.01 15.8 0.0 0.014 15.4 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease Hjc PF01870.18 gi|352681975|ref|YP_004892499.1| - 0.097 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) MASE3 PF17159.4 gi|352681976|ref|YP_004892500.1| - 0.4 10.3 5.8 1.6 8.3 5.8 1.8 1 1 0 1 1 1 0 Membrane-associated sensor domain DinB_2 PF12867.7 gi|352681977|ref|YP_004892501.1| - 0.0069 16.9 0.0 0.01 16.4 0.0 1.3 1 0 0 1 1 1 1 DinB superfamily LapA_dom PF06305.11 gi|352681977|ref|YP_004892501.1| - 0.31 10.9 1.8 0.63 9.9 1.8 1.6 1 1 0 1 1 1 0 Lipopolysaccharide assembly protein A domain DUF883 PF05957.13 gi|352681977|ref|YP_004892501.1| - 2.2 9.0 4.0 49 4.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Phage_holin_2_4 PF16082.5 gi|352681978|ref|YP_004892502.1| - 0.041 13.6 0.0 0.045 13.5 0.0 1.0 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like NfeD PF01957.18 gi|352681979|ref|YP_004892503.1| - 1.1e-11 45.0 0.1 5.6e-11 42.7 0.1 2.3 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|352681979|ref|YP_004892503.1| - 0.0021 17.1 0.0 0.0037 16.3 0.0 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|352681979|ref|YP_004892503.1| - 0.035 14.0 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 Clp protease Band_7 PF01145.25 gi|352681980|ref|YP_004892504.1| - 1.2e-34 119.9 2.5 1.2e-34 119.9 2.5 1.4 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|352681980|ref|YP_004892504.1| - 0.0002 21.1 0.1 0.00045 20.0 0.0 1.6 2 0 0 2 2 2 1 SPFH domain-Band 7 family pPIWI_RE_REase PF18154.1 gi|352681980|ref|YP_004892504.1| - 0.022 14.7 1.6 0.047 13.6 0.3 2.1 2 0 0 2 2 2 0 REase associating with pPIWI_RE Glyco_hydro_80 PF13647.6 gi|352681980|ref|YP_004892504.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A ATP-synt_D PF01813.17 gi|352681981|ref|YP_004892505.1| - 1.5e-38 132.6 8.6 1.7e-38 132.4 8.6 1.0 1 0 0 1 1 1 1 ATP synthase subunit D DegS PF05384.11 gi|352681982|ref|YP_004892506.1| - 0.01 15.3 2.8 0.011 15.2 2.8 1.0 1 0 0 1 1 1 0 Sensor protein DegS Nsp1_C PF05064.13 gi|352681982|ref|YP_004892506.1| - 0.016 15.0 0.7 0.017 14.9 0.7 1.1 1 0 0 1 1 1 0 Nsp1-like C-terminal region Phage_GP20 PF06810.11 gi|352681982|ref|YP_004892506.1| - 0.027 14.3 3.7 0.049 13.4 3.7 1.5 1 1 0 1 1 1 0 Phage minor structural protein GP20 DUF2205 PF10224.9 gi|352681982|ref|YP_004892506.1| - 0.042 13.9 3.4 0.053 13.5 3.3 1.3 1 1 0 1 1 1 0 Short coiled-coil protein DUF1319 PF07028.11 gi|352681982|ref|YP_004892506.1| - 0.044 14.0 3.3 0.075 13.3 3.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) Sec5 PF15469.6 gi|352681982|ref|YP_004892506.1| - 0.05 13.4 2.2 0.054 13.3 2.2 1.0 1 0 0 1 1 1 0 Exocyst complex component Sec5 DUF2031 PF09592.10 gi|352681982|ref|YP_004892506.1| - 0.066 12.7 3.8 0.072 12.6 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2031) Med30 PF11315.8 gi|352681982|ref|YP_004892506.1| - 0.073 13.3 2.3 0.071 13.3 2.3 1.1 1 0 0 1 1 1 0 Mediator complex subunit 30 ApoO PF09769.9 gi|352681982|ref|YP_004892506.1| - 0.1 12.5 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein O DUF1664 PF07889.12 gi|352681982|ref|YP_004892506.1| - 0.12 12.4 1.5 0.14 12.2 1.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Peptidase_M41 PF01434.18 gi|352681982|ref|YP_004892506.1| - 0.12 12.2 2.4 0.13 12.1 2.4 1.0 1 0 0 1 1 1 0 Peptidase family M41 DASH_Dam1 PF08653.10 gi|352681982|ref|YP_004892506.1| - 0.13 12.1 0.4 0.27 11.0 0.1 1.6 2 0 0 2 2 2 0 DASH complex subunit Dam1 BRX_N PF13713.6 gi|352681982|ref|YP_004892506.1| - 0.17 11.7 4.3 0.85 9.4 0.3 2.2 2 0 0 2 2 2 0 Transcription factor BRX N-terminal domain ATP-synt_C PF00137.21 gi|352681983|ref|YP_004892507.1| - 1.6e-19 70.0 15.5 1.6e-19 70.0 15.5 1.4 2 0 0 2 2 2 1 ATP synthase subunit C DUF3094 PF11293.8 gi|352681983|ref|YP_004892507.1| - 0.05 13.3 0.2 0.11 12.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) DIM PF08194.12 gi|352681983|ref|YP_004892507.1| - 0.1 12.8 1.5 0.2 11.9 0.0 2.2 2 1 0 2 2 2 0 DIM protein FtsX PF02687.21 gi|352681983|ref|YP_004892507.1| - 0.16 12.4 7.5 0.05 14.1 4.1 1.7 2 0 0 2 2 2 0 FtsX-like permease family vATP-synt_AC39 PF01992.16 gi|352681984|ref|YP_004892508.1| - 2.2e-20 73.4 1.1 2.7e-20 73.1 1.1 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_B PF00430.18 gi|352681985|ref|YP_004892509.1| - 7.3e-05 22.9 10.2 0.009 16.1 0.3 2.0 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 gi|352681985|ref|YP_004892509.1| - 0.00022 21.6 9.2 0.00083 19.7 3.4 2.1 1 1 1 2 2 2 1 Vacuolar (H+)-ATPase G subunit ISG65-75 PF11727.8 gi|352681985|ref|YP_004892509.1| - 0.00078 18.8 8.4 0.00088 18.6 8.4 1.0 1 0 0 1 1 1 1 Invariant surface glycoprotein AF0941-like PF14591.6 gi|352681985|ref|YP_004892509.1| - 0.0052 17.3 12.7 0.0063 17.1 12.7 1.1 1 0 0 1 1 1 1 AF0941-like Scm3 PF10384.9 gi|352681985|ref|YP_004892509.1| - 0.0053 16.5 1.7 2 8.2 0.1 2.3 2 0 0 2 2 2 2 Centromere protein Scm3 Apolipoprotein PF01442.18 gi|352681985|ref|YP_004892509.1| - 0.0068 16.3 8.1 0.0076 16.1 8.1 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain T3SS_TC PF06511.11 gi|352681985|ref|YP_004892509.1| - 0.0071 15.8 0.3 0.009 15.4 0.3 1.2 1 0 0 1 1 1 1 Type III secretion systems tip complex components DivIVA PF05103.13 gi|352681985|ref|YP_004892509.1| - 0.0087 16.1 13.6 0.011 15.9 13.6 1.1 1 0 0 1 1 1 1 DivIVA protein KfrA_N PF11740.8 gi|352681985|ref|YP_004892509.1| - 0.011 16.3 0.6 0.016 15.9 0.6 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term DUF2130 PF09903.9 gi|352681985|ref|YP_004892509.1| - 0.019 14.2 11.2 0.077 12.2 4.7 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Cse1 PF08506.10 gi|352681985|ref|YP_004892509.1| - 0.024 13.5 7.0 0.12 11.2 1.5 2.0 1 1 1 2 2 2 0 Cse1 V-ATPase_G PF03179.15 gi|352681985|ref|YP_004892509.1| - 0.029 14.9 13.5 0.13 12.8 3.8 2.2 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit ARGLU PF15346.6 gi|352681985|ref|YP_004892509.1| - 0.061 13.2 14.1 0.087 12.7 14.0 1.3 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 Phasin PF05597.11 gi|352681985|ref|YP_004892509.1| - 0.064 13.3 7.1 0.48 10.4 0.6 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Phage_min_cap2 PF06152.11 gi|352681985|ref|YP_004892509.1| - 0.07 12.0 6.6 0.076 11.9 6.6 1.1 1 0 0 1 1 1 0 Phage minor capsid protein 2 Prominin PF05478.11 gi|352681985|ref|YP_004892509.1| - 0.07 11.1 6.7 0.074 11.0 6.7 1.1 1 0 0 1 1 1 0 Prominin VIGSSK PF14773.6 gi|352681985|ref|YP_004892509.1| - 0.077 13.1 1.8 0.19 11.9 0.3 2.1 2 0 0 2 2 2 0 Helicase-associated putative binding domain, C-terminal Tht1 PF04163.12 gi|352681985|ref|YP_004892509.1| - 0.11 11.2 7.2 0.12 11.1 7.2 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein DUF2294 PF10057.9 gi|352681985|ref|YP_004892509.1| - 0.12 12.5 5.6 0.062 13.4 2.5 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2294) RRF PF01765.19 gi|352681985|ref|YP_004892509.1| - 0.14 12.1 14.6 0.63 10.0 3.4 2.0 1 1 1 2 2 2 0 Ribosome recycling factor Xpo1 PF08389.12 gi|352681985|ref|YP_004892509.1| - 0.14 12.2 5.9 2.3 8.3 5.9 2.0 1 1 0 1 1 1 0 Exportin 1-like protein Taeniidae_ag PF05596.11 gi|352681985|ref|YP_004892509.1| - 0.32 11.0 4.7 0.57 10.2 0.4 2.7 2 1 0 2 2 2 0 Taeniidae antigen DUF4735 PF15882.5 gi|352681985|ref|YP_004892509.1| - 0.33 10.4 2.3 0.38 10.1 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4735) DUF445 PF04286.12 gi|352681985|ref|YP_004892509.1| - 0.41 10.4 9.2 0.5 10.1 9.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Syntaxin-6_N PF09177.11 gi|352681985|ref|YP_004892509.1| - 0.43 11.2 9.4 0.54 10.8 9.4 1.1 1 0 0 1 1 1 0 Syntaxin 6, N-terminal LMBR1 PF04791.16 gi|352681985|ref|YP_004892509.1| - 0.43 9.4 7.2 0.52 9.2 7.2 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4806 PF16064.5 gi|352681985|ref|YP_004892509.1| - 0.45 10.9 3.9 0.4 11.0 2.9 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4806) Mer2 PF09074.10 gi|352681985|ref|YP_004892509.1| - 0.5 10.2 11.2 0.58 9.9 11.2 1.0 1 0 0 1 1 1 0 Mer2 YtxH PF12732.7 gi|352681985|ref|YP_004892509.1| - 0.61 10.6 9.5 25 5.5 9.5 2.2 1 1 0 1 1 1 0 YtxH-like protein Peptidase_C98 PF15499.6 gi|352681985|ref|YP_004892509.1| - 0.63 9.5 4.3 0.82 9.1 4.3 1.3 1 0 0 1 1 1 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase Phage_Mu_Gam PF07352.12 gi|352681985|ref|YP_004892509.1| - 0.65 9.9 15.0 1.5 8.8 10.4 2.0 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein Lipoprotein_3 PF00938.17 gi|352681985|ref|YP_004892509.1| - 0.81 9.9 6.7 0.47 10.7 2.1 2.2 1 1 1 2 2 2 0 Lipoprotein MCU PF04678.13 gi|352681985|ref|YP_004892509.1| - 1 9.4 6.4 2.9 8.0 6.4 1.7 1 1 0 1 1 1 0 Mitochondrial calcium uniporter Peptidase_M41 PF01434.18 gi|352681985|ref|YP_004892509.1| - 1.1 9.1 9.6 53 3.6 9.5 2.1 1 1 0 1 1 1 0 Peptidase family M41 RNA_pol_Rpb1_4 PF05000.17 gi|352681985|ref|YP_004892509.1| - 1.2 9.1 8.4 1.1 9.2 2.1 2.1 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 4 CemA PF03040.14 gi|352681985|ref|YP_004892509.1| - 1.4 8.9 8.6 0.96 9.3 5.8 1.8 1 1 1 2 2 2 0 CemA family DUF948 PF06103.11 gi|352681985|ref|YP_004892509.1| - 1.8 8.9 5.8 2.7 8.3 1.7 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) TetR_C_23 PF17931.1 gi|352681985|ref|YP_004892509.1| - 2 8.5 7.0 0.59 10.3 1.0 2.0 1 1 1 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Rad50_zn_hook PF04423.14 gi|352681985|ref|YP_004892509.1| - 3.3 7.6 12.2 4.2 7.3 0.6 3.7 3 1 1 4 4 4 0 Rad50 zinc hook motif Spore_II_R PF09551.10 gi|352681985|ref|YP_004892509.1| - 4.1 7.9 8.5 25 5.3 7.7 1.9 1 1 0 1 1 1 0 Stage II sporulation protein R (spore_II_R) TMPIT PF07851.13 gi|352681985|ref|YP_004892509.1| - 6 6.0 8.7 7 5.8 8.7 1.1 1 0 0 1 1 1 0 TMPIT-like protein ATPase PF06745.13 gi|352681986|ref|YP_004892510.1| - 9.6e-67 224.7 0.3 1.1e-66 224.5 0.3 1.0 1 0 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|352681986|ref|YP_004892510.1| - 4.7e-05 22.8 0.1 6.8e-05 22.2 0.1 1.2 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|352681986|ref|YP_004892510.1| - 0.00031 20.3 0.0 0.00055 19.5 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|352681986|ref|YP_004892510.1| - 0.0017 18.0 0.0 0.0028 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|352681986|ref|YP_004892510.1| - 0.0046 15.6 0.9 0.033 12.8 0.9 1.9 1 1 0 1 1 1 1 GvpD gas vesicle protein ResIII PF04851.15 gi|352681986|ref|YP_004892510.1| - 0.0067 16.4 0.1 0.013 15.6 0.1 1.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|352681986|ref|YP_004892510.1| - 0.0078 16.0 0.0 0.01 15.6 0.0 1.2 1 0 0 1 1 1 1 DEAD/DEAH box helicase DnaB_C PF03796.15 gi|352681986|ref|YP_004892510.1| - 0.0099 15.2 0.0 0.013 14.8 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain PAXNEB PF05625.11 gi|352681986|ref|YP_004892510.1| - 0.038 13.1 0.3 0.057 12.6 0.3 1.2 1 0 0 1 1 1 0 PAXNEB protein AAA_22 PF13401.6 gi|352681986|ref|YP_004892510.1| - 0.04 14.2 0.1 0.081 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|352681986|ref|YP_004892510.1| - 0.047 14.1 0.0 0.073 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.9 gi|352681986|ref|YP_004892510.1| - 0.056 12.7 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Thymidylate_kin PF02223.17 gi|352681987|ref|YP_004892511.1| - 3.3e-45 154.1 0.0 3.8e-45 153.8 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|352681987|ref|YP_004892511.1| - 1.3e-08 34.9 0.0 9.2e-07 28.9 0.0 2.2 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|352681987|ref|YP_004892511.1| - 1.6e-07 31.9 0.0 4e-07 30.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|352681987|ref|YP_004892511.1| - 2.2e-05 24.7 0.0 3.6e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|352681987|ref|YP_004892511.1| - 0.063 12.7 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352681987|ref|YP_004892511.1| - 0.067 13.5 0.0 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain GATase PF00117.28 gi|352681988|ref|YP_004892512.1| - 5.4e-20 72.0 0.0 6.5e-20 71.7 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|352681988|ref|YP_004892512.1| - 1.5e-05 24.8 0.0 0.03 14.1 0.0 2.2 2 0 0 2 2 2 2 Peptidase C26 SNO PF01174.19 gi|352681988|ref|YP_004892512.1| - 0.00044 20.1 0.0 0.0015 18.4 0.0 1.8 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|352681988|ref|YP_004892512.1| - 0.0017 18.0 0.0 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 gi|352681988|ref|YP_004892512.1| - 0.15 11.1 0.0 2.1 7.3 0.0 2.1 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain HisG PF01634.18 gi|352681989|ref|YP_004892513.1| - 1.8e-44 151.5 0.3 2.5e-44 151.1 0.3 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|352681989|ref|YP_004892513.1| - 3.2e-20 72.0 0.2 6.8e-20 71.0 0.2 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain Aminotran_1_2 PF00155.21 gi|352681990|ref|YP_004892514.1| - 1.2e-26 93.8 0.0 1.7e-26 93.3 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|352681990|ref|YP_004892514.1| - 0.028 13.3 0.0 0.034 13.0 0.0 1.1 1 0 0 1 1 1 0 Allinase PRA-CH PF01502.18 gi|352681991|ref|YP_004892515.1| - 5e-29 100.0 0.1 7.4e-29 99.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PRA-PH PF01503.17 gi|352681992|ref|YP_004892516.1| - 1.8e-16 60.4 0.1 2e-16 60.2 0.1 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|352681992|ref|YP_004892516.1| - 8.8e-05 22.6 0.3 0.00014 22.0 0.3 1.3 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Rad21_Rec8 PF04824.16 gi|352681992|ref|YP_004892516.1| - 0.1 11.9 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein Histidinol_dh PF00815.20 gi|352681993|ref|YP_004892517.1| - 7.7e-71 239.2 0.0 1.1e-70 238.8 0.0 1.1 1 0 0 1 1 1 1 Histidinol dehydrogenase PEP-utilizers PF00391.23 gi|352681993|ref|YP_004892517.1| - 0.12 12.1 0.1 1.9 8.2 0.1 2.4 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain His_biosynth PF00977.21 gi|352681994|ref|YP_004892518.1| - 3.6e-82 275.2 1.3 4.1e-82 275.1 1.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|352681994|ref|YP_004892518.1| - 3.1e-07 29.9 0.2 0.00047 19.5 0.0 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|352681994|ref|YP_004892518.1| - 2.6e-06 26.9 0.2 0.057 12.7 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase Dus PF01207.17 gi|352681994|ref|YP_004892518.1| - 3.2e-06 26.5 0.0 1e-05 24.8 0.0 1.7 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|352681994|ref|YP_004892518.1| - 4.5e-06 26.3 3.3 0.015 14.7 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|352681994|ref|YP_004892518.1| - 0.00015 21.1 0.3 0.021 14.1 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|352681994|ref|YP_004892518.1| - 0.00021 20.7 0.3 0.0049 16.3 0.1 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|352681994|ref|YP_004892518.1| - 0.016 14.3 2.9 0.076 12.0 0.4 2.1 1 1 1 2 2 2 0 IMP dehydrogenase / GMP reductase domain Trp_syntA PF00290.20 gi|352681994|ref|YP_004892518.1| - 0.11 11.3 0.1 0.2 10.5 0.1 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain IGPD PF00475.18 gi|352681995|ref|YP_004892519.1| - 2e-42 144.9 0.0 2.3e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|352681996|ref|YP_004892520.1| - 1e-48 165.8 0.1 1.1e-48 165.7 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein GATase PF00117.28 gi|352681997|ref|YP_004892521.1| - 1.2e-37 129.6 0.0 1.7e-37 129.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|352681997|ref|YP_004892521.1| - 3.8e-33 113.4 0.1 8.3e-33 112.3 0.1 1.6 1 0 0 1 1 1 1 GMP synthase C terminal domain Peptidase_C26 PF07722.13 gi|352681997|ref|YP_004892521.1| - 2.3e-14 53.7 0.3 3.2e-13 49.9 0.2 2.5 1 1 1 2 2 2 1 Peptidase C26 NAD_synthase PF02540.17 gi|352681997|ref|YP_004892521.1| - 3.5e-10 39.4 0.0 2.3e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 NAD synthase ATP_bind_3 PF01171.20 gi|352681997|ref|YP_004892521.1| - 0.0015 18.4 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|352681997|ref|YP_004892521.1| - 0.0028 17.2 0.0 0.029 13.9 0.0 2.1 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|352681997|ref|YP_004892521.1| - 0.012 14.4 0.0 0.065 12.0 0.0 2.0 2 0 0 2 2 2 0 tRNA methyl transferase PAPS_reduct PF01507.19 gi|352681997|ref|YP_004892521.1| - 0.028 14.4 0.0 0.051 13.6 0.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family Abhydrolase_6 PF12697.7 gi|352681997|ref|YP_004892521.1| - 0.073 13.7 0.1 0.19 12.3 0.0 2.0 1 1 1 2 2 2 0 Alpha/beta hydrolase family HAD PF12710.7 gi|352681997|ref|YP_004892521.1| - 0.094 13.1 0.4 0.72 10.2 0.1 2.4 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase CitMHS PF03600.16 gi|352681998|ref|YP_004892522.1| - 4.1e-27 95.2 38.2 4.1e-27 95.2 38.2 1.6 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|352681998|ref|YP_004892522.1| - 3.7 6.5 33.4 2.5 7.0 15.9 3.2 2 2 0 2 2 2 0 Sodium:sulfate symporter transmembrane region DUF4147 PF13660.6 gi|352681999|ref|YP_004892523.1| - 9.5e-48 162.7 0.3 1.3e-47 162.3 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|352681999|ref|YP_004892523.1| - 1.1e-24 86.8 0.2 2.6e-24 85.5 0.2 1.6 1 0 0 1 1 1 1 MOFRL family ILVD_EDD PF00920.21 gi|352682000|ref|YP_004892524.1| - 8.4e-200 664.8 0.0 9.5e-200 664.6 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family DUF192 PF02643.15 gi|352682001|ref|YP_004892525.1| - 5.3e-11 42.5 0.0 7.3e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 adh_short_C2 PF13561.6 gi|352682002|ref|YP_004892526.1| - 2.9e-66 223.4 0.9 3.5e-66 223.1 0.9 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|352682002|ref|YP_004892526.1| - 1.1e-51 175.1 0.1 1.4e-51 174.8 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|352682002|ref|YP_004892526.1| - 1.5e-11 44.6 0.0 3.7e-11 43.2 0.0 1.6 1 1 1 2 2 2 1 KR domain Epimerase PF01370.21 gi|352682002|ref|YP_004892526.1| - 7.3e-06 25.6 0.2 0.00029 20.4 0.0 2.5 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.19 gi|352682002|ref|YP_004892526.1| - 0.014 14.7 0.0 0.032 13.5 0.0 1.7 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|352682002|ref|YP_004892526.1| - 0.024 14.6 0.9 0.042 13.7 0.2 1.7 2 0 0 2 2 2 0 NAD(P)H-binding Glyco_tranf_2_3 PF13641.6 gi|352682002|ref|YP_004892526.1| - 0.11 12.4 0.0 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Sugar_tr PF00083.24 gi|352682003|ref|YP_004892527.1| - 4.3e-16 58.8 25.8 6.2e-15 55.0 10.3 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|352682003|ref|YP_004892527.1| - 2.4e-14 53.0 45.6 2.4e-14 53.0 45.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily FAD-oxidase_C PF02913.19 gi|352682004|ref|YP_004892528.1| - 6e-47 160.4 0.0 1e-46 159.7 0.0 1.4 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|352682004|ref|YP_004892528.1| - 2.4e-37 127.8 0.3 5.6e-37 126.6 0.2 1.7 2 0 0 2 2 2 1 FAD binding domain LUD_dom PF02589.15 gi|352682005|ref|YP_004892529.1| - 7.5e-52 175.8 0.0 1.7e-51 174.7 0.0 1.5 1 1 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|352682005|ref|YP_004892529.1| - 3e-07 30.8 0.6 5.2e-07 30.0 0.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352682005|ref|YP_004892529.1| - 1.6e-05 25.4 2.8 0.00046 20.7 4.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682005|ref|YP_004892529.1| - 0.00022 21.8 3.9 0.00041 20.9 3.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352682005|ref|YP_004892529.1| - 0.00036 20.6 7.4 0.014 15.5 8.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|352682005|ref|YP_004892529.1| - 0.0014 18.4 2.5 0.0094 15.7 0.1 2.3 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|352682005|ref|YP_004892529.1| - 0.02 15.1 2.2 0.66 10.2 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352682005|ref|YP_004892529.1| - 0.062 13.5 4.8 0.63 10.3 5.8 2.0 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352682005|ref|YP_004892529.1| - 0.3 12.0 6.1 7.6 7.6 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|352682005|ref|YP_004892529.1| - 0.95 9.6 5.9 1.7 8.8 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain DHO_dh PF01180.21 gi|352682006|ref|YP_004892530.1| - 1.3e-28 100.1 0.0 2.6e-27 95.8 0.0 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|352682006|ref|YP_004892530.1| - 0.0022 17.4 0.1 0.0033 16.9 0.1 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase Pribosyltran PF00156.27 gi|352682007|ref|YP_004892531.1| - 1.3e-14 54.0 0.1 1.8e-14 53.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|352682007|ref|YP_004892531.1| - 9.8e-06 25.2 0.0 1.3e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|352682007|ref|YP_004892531.1| - 0.00013 21.5 0.0 0.00018 21.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase Pribosyl_synth PF14572.6 gi|352682007|ref|YP_004892531.1| - 0.11 12.5 0.1 0.16 12.0 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Glyco_trans_4_2 PF13477.6 gi|352682007|ref|YP_004892531.1| - 0.19 11.8 0.3 3.1 7.8 0.1 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like PyrI PF01948.18 gi|352682008|ref|YP_004892532.1| - 1.5e-34 118.1 2.0 1.8e-34 117.9 2.0 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|352682008|ref|YP_004892532.1| - 3.1e-15 55.8 0.2 5.3e-15 55.0 0.2 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain OMPdecase PF00215.24 gi|352682009|ref|YP_004892533.1| - 1.3e-13 51.1 0.9 2.7e-12 46.8 0.9 2.1 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family TetR_C_36 PF18598.1 gi|352682009|ref|YP_004892533.1| - 0.088 12.8 0.0 0.23 11.4 0.0 1.7 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain OTCace_N PF02729.21 gi|352682010|ref|YP_004892534.1| - 1.3e-47 161.5 0.0 2.1e-47 160.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|352682010|ref|YP_004892534.1| - 1.6e-29 103.0 0.0 2.5e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BAT PF15915.5 gi|352682010|ref|YP_004892534.1| - 0.037 13.9 0.3 0.065 13.1 0.3 1.3 1 0 0 1 1 1 0 GAF and HTH_10 associated domain DUF2250 PF10007.9 gi|352682011|ref|YP_004892535.1| - 1.6e-06 28.2 0.0 5.4e-06 26.4 0.0 1.9 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|352682011|ref|YP_004892535.1| - 0.1 12.5 0.1 2.6 8.0 0.0 2.1 2 0 0 2 2 2 0 MarR family Replic_Relax PF13814.6 gi|352682011|ref|YP_004892535.1| - 0.14 12.2 0.0 0.67 10.0 0.0 1.9 1 1 0 1 1 1 0 Replication-relaxation Sun2_CC2 PF18580.1 gi|352682011|ref|YP_004892535.1| - 0.17 12.2 0.1 0.32 11.2 0.1 1.5 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 DAO PF01266.24 gi|352682012|ref|YP_004892536.1| - 9.3e-12 45.2 5.7 1.1e-07 31.8 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|352682012|ref|YP_004892536.1| - 4.2e-09 36.0 0.1 6.9e-09 35.4 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|352682012|ref|YP_004892536.1| - 0.0035 17.5 2.0 0.0093 16.2 1.2 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|352682012|ref|YP_004892536.1| - 0.004 16.3 0.1 0.096 11.7 0.0 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|352682012|ref|YP_004892536.1| - 0.0095 15.2 2.7 0.024 13.9 1.0 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|352682012|ref|YP_004892536.1| - 0.11 11.5 2.1 1.8 7.5 1.0 2.1 2 0 0 2 2 2 0 FAD binding domain HI0933_like PF03486.14 gi|352682012|ref|YP_004892536.1| - 0.42 9.3 2.9 1.6 7.3 1.1 2.0 2 0 0 2 2 2 0 HI0933-like protein AA_kinase PF00696.28 gi|352682016|ref|YP_004892540.1| - 1e-32 113.7 0.0 1.7e-32 113.0 0.0 1.3 1 1 0 1 1 1 1 Amino acid kinase family tRNA-synt_His PF13393.6 gi|352682017|ref|YP_004892541.1| - 2.4e-64 217.6 0.1 4.6e-64 216.6 0.1 1.5 2 0 0 2 2 2 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|352682017|ref|YP_004892541.1| - 1.8e-12 47.3 0.5 4.5e-12 46.0 0.5 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|352682017|ref|YP_004892541.1| - 1e-08 35.4 0.0 4.3e-08 33.3 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|352682017|ref|YP_004892541.1| - 0.00043 19.8 0.1 0.0024 17.4 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) TIR_2 PF13676.6 gi|352682017|ref|YP_004892541.1| - 0.058 14.0 0.1 0.32 11.6 0.0 2.1 2 0 0 2 2 2 0 TIR domain HGTP_anticodon2 PF12745.7 gi|352682017|ref|YP_004892541.1| - 0.064 12.8 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs Sacchrp_dh_C PF16653.5 gi|352682018|ref|YP_004892542.1| - 4.7e-32 112.1 0.0 5.6e-32 111.9 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain ApbA PF02558.16 gi|352682018|ref|YP_004892542.1| - 0.00043 20.0 0.1 0.00094 18.9 0.1 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|352682018|ref|YP_004892542.1| - 0.0014 18.2 0.9 0.0028 17.2 0.9 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Semialdhyde_dh PF01118.24 gi|352682018|ref|YP_004892542.1| - 0.0018 18.7 0.1 0.0082 16.6 0.0 2.0 3 0 0 3 3 3 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|352682018|ref|YP_004892542.1| - 0.0028 17.9 0.2 1.8 8.9 0.0 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|352682018|ref|YP_004892542.1| - 0.036 14.0 0.1 0.067 13.1 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|352682018|ref|YP_004892542.1| - 0.091 13.4 0.1 0.23 12.1 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|352682018|ref|YP_004892542.1| - 0.097 12.9 0.2 0.25 11.6 0.2 1.7 2 0 0 2 2 2 0 TrkA-N domain Spc42p PF11544.8 gi|352682019|ref|YP_004892543.1| - 0.033 14.2 0.1 0.067 13.2 0.1 1.4 1 0 0 1 1 1 0 Spindle pole body component Spc42p OrfB_Zn_ribbon PF07282.11 gi|352682021|ref|YP_004892545.1| - 0.00091 19.1 0.0 0.00099 19.0 0.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF520 PF04461.13 gi|352682022|ref|YP_004892546.1| - 0.0023 18.1 0.1 0.0023 18.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF520) Phage_Gp111 PF07410.11 gi|352682022|ref|YP_004892546.1| - 0.15 12.6 0.0 0.16 12.4 0.0 1.1 1 0 0 1 1 1 0 Streptococcus thermophilus bacteriophage Gp111 protein RNA_binding PF01877.17 gi|352682023|ref|YP_004892547.1| - 5.1e-29 101.0 0.0 6.7e-29 100.6 0.0 1.2 1 0 0 1 1 1 1 RNA binding ABM PF03992.16 gi|352682023|ref|YP_004892547.1| - 0.049 13.7 0.1 7.7 6.7 0.1 2.7 2 1 0 2 2 2 0 Antibiotic biosynthesis monooxygenase Proteasome PF00227.26 gi|352682024|ref|YP_004892548.1| - 2.3e-58 196.8 0.0 5.9e-58 195.5 0.0 1.6 2 0 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|352682024|ref|YP_004892548.1| - 1.1e-12 47.4 1.2 2.3e-12 46.3 0.1 2.2 3 0 0 3 3 3 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|352682026|ref|YP_004892550.1| - 7.6e-24 83.6 0.1 1.4e-23 82.8 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|352682026|ref|YP_004892550.1| - 1.8e-19 69.9 0.2 2.9e-19 69.2 0.2 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain PLU-1 PF08429.11 gi|352682026|ref|YP_004892550.1| - 0.034 13.3 0.2 0.04 13.1 0.2 1.1 1 0 0 1 1 1 0 PLU-1-like protein Cmyb_C PF09316.10 gi|352682026|ref|YP_004892550.1| - 0.45 10.2 3.3 1.2 8.7 0.2 2.0 1 1 1 2 2 2 0 C-myb, C-terminal KH_6 PF15985.5 gi|352682027|ref|YP_004892551.1| - 7.2e-10 39.1 0.0 1.3e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|352682027|ref|YP_004892551.1| - 0.00074 19.3 0.0 0.0016 18.2 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|352682027|ref|YP_004892551.1| - 0.041 13.7 0.1 0.13 12.1 0.1 1.9 1 0 0 1 1 1 0 KH domain ECR1_N PF14382.6 gi|352682027|ref|YP_004892551.1| - 0.08 12.8 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Exosome complex exonuclease RRP4 N-terminal region RNase_PH PF01138.21 gi|352682028|ref|YP_004892552.1| - 1.4e-36 125.9 0.0 1.8e-36 125.5 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|352682028|ref|YP_004892552.1| - 4e-14 52.4 0.0 7.7e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|352682029|ref|YP_004892553.1| - 1.5e-23 83.7 0.0 3e-23 82.8 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|352682029|ref|YP_004892553.1| - 4.6e-11 42.6 0.1 8.5e-11 41.7 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|352682030|ref|YP_004892554.1| - 2.4e-29 101.2 0.2 3e-29 100.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|352682030|ref|YP_004892554.1| - 0.00052 19.9 1.3 0.0008 19.3 1.3 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-tcix PF14952.6 gi|352682030|ref|YP_004892554.1| - 0.001 18.6 3.6 0.35 10.5 0.1 2.5 2 0 0 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding IBR PF01485.21 gi|352682030|ref|YP_004892554.1| - 0.002 18.3 0.1 0.003 17.7 0.1 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf-H2C2_2 PF13465.6 gi|352682030|ref|YP_004892554.1| - 0.0025 18.2 1.0 0.64 10.6 0.2 2.5 2 0 0 2 2 2 1 Zinc-finger double domain zf-C2H2_3 PF13878.6 gi|352682030|ref|YP_004892554.1| - 0.0038 17.0 0.1 0.6 10.0 0.0 2.3 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.11 gi|352682030|ref|YP_004892554.1| - 0.0063 16.4 1.1 0.024 14.6 0.2 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-RING_7 PF02591.15 gi|352682030|ref|YP_004892554.1| - 0.017 15.3 1.3 1 9.6 0.2 3.0 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|352682030|ref|YP_004892554.1| - 0.02 14.6 2.7 2.2 8.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|352682030|ref|YP_004892554.1| - 0.023 14.6 3.1 3.3 7.7 0.5 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-LITAF-like PF10601.9 gi|352682030|ref|YP_004892554.1| - 0.037 14.3 0.5 0.51 10.6 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|352682030|ref|YP_004892554.1| - 0.052 13.3 0.4 0.54 10.0 0.1 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.7 gi|352682030|ref|YP_004892554.1| - 0.061 13.4 0.4 0.1 12.6 0.4 1.5 1 1 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|352682030|ref|YP_004892554.1| - 0.085 12.8 0.8 0.12 12.3 0.8 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1610 PF07754.11 gi|352682030|ref|YP_004892554.1| - 0.11 12.5 4.9 5.9 6.9 0.3 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.10 gi|352682030|ref|YP_004892554.1| - 0.11 12.6 1.0 7.7 6.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|352682030|ref|YP_004892554.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 gi|352682030|ref|YP_004892554.1| - 0.14 11.5 4.1 0.91 8.9 4.0 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF2225 PF09986.9 gi|352682030|ref|YP_004892554.1| - 0.15 11.7 0.1 0.23 11.2 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf_C2H2_10 PF18414.1 gi|352682030|ref|YP_004892554.1| - 0.22 11.1 1.6 5.2 6.7 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-C4_Topoisom PF01396.19 gi|352682030|ref|YP_004892554.1| - 0.23 11.3 5.4 0.8 9.5 0.1 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_10 PF10058.9 gi|352682030|ref|YP_004892554.1| - 0.25 11.1 3.0 16 5.3 0.2 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_4 PF13717.6 gi|352682030|ref|YP_004892554.1| - 0.32 11.0 4.4 3.9 7.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF4379 PF14311.6 gi|352682030|ref|YP_004892554.1| - 0.34 11.3 5.9 16 6.0 1.0 3.1 2 1 1 3 3 3 0 Probable Zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|352682030|ref|YP_004892554.1| - 0.47 9.9 3.7 8.7 5.9 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|352682030|ref|YP_004892554.1| - 0.78 9.5 4.9 6.6 6.6 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HalOD2 PF18547.1 gi|352682030|ref|YP_004892554.1| - 1.2 9.1 5.3 0.55 10.2 0.3 2.5 3 0 0 3 3 3 0 Halobacterial output domain 2 UPF0547 PF10571.9 gi|352682030|ref|YP_004892554.1| - 1.5 8.9 5.8 6.1 7.0 1.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Pcc1 PF09341.10 gi|352682032|ref|YP_004892556.1| - 0.00062 19.8 0.1 0.00069 19.7 0.1 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 DUF2218 PF09981.9 gi|352682032|ref|YP_004892556.1| - 0.049 14.0 0.0 0.05 14.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) Prefoldin_2 PF01920.20 gi|352682033|ref|YP_004892557.1| - 7.6e-26 90.1 14.6 8.6e-26 90.0 14.6 1.0 1 0 0 1 1 1 1 Prefoldin subunit HAUS5 PF14817.6 gi|352682033|ref|YP_004892557.1| - 0.0034 16.2 5.0 0.0038 16.1 5.0 1.0 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 5 DUF4510 PF14971.6 gi|352682033|ref|YP_004892557.1| - 0.014 15.8 0.8 0.014 15.8 0.8 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4510) Enkurin PF13864.6 gi|352682033|ref|YP_004892557.1| - 0.098 13.1 7.3 0.28 11.6 0.4 2.3 2 0 0 2 2 2 0 Calmodulin-binding DUF3584 PF12128.8 gi|352682033|ref|YP_004892557.1| - 0.1 10.1 7.8 0.16 9.5 7.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HlyD_2 PF12700.7 gi|352682033|ref|YP_004892557.1| - 0.1 11.3 2.8 0.12 11.1 2.8 1.0 1 0 0 1 1 1 0 HlyD family secretion protein Gon7 PF08738.10 gi|352682033|ref|YP_004892557.1| - 0.12 12.5 1.7 0.4 10.8 0.1 2.1 2 0 0 2 2 2 0 Gon7 family UBN_AB PF14075.6 gi|352682033|ref|YP_004892557.1| - 0.16 11.7 6.4 0.2 11.4 6.4 1.1 1 0 0 1 1 1 0 Ubinuclein conserved middle domain DUF2408 PF10303.9 gi|352682033|ref|YP_004892557.1| - 0.19 12.3 7.2 0.3 11.7 7.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) OrfB_IS605 PF01385.19 gi|352682033|ref|YP_004892557.1| - 0.45 10.8 4.1 0.68 10.2 0.9 2.0 1 1 1 2 2 2 0 Probable transposase Macoilin PF09726.9 gi|352682033|ref|YP_004892557.1| - 0.63 8.5 7.4 0.77 8.2 7.4 1.1 1 0 0 1 1 1 0 Macoilin family DUF4407 PF14362.6 gi|352682033|ref|YP_004892557.1| - 0.77 9.1 6.9 2.1 7.6 6.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3086 PF11285.8 gi|352682033|ref|YP_004892557.1| - 1.4 7.9 6.8 0.64 9.1 1.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) Com_YlbF PF06133.11 gi|352682033|ref|YP_004892557.1| - 1.5 9.5 12.5 71 4.1 12.5 2.2 1 1 0 1 1 1 0 Control of competence regulator ComK, YlbF/YmcA Prefoldin PF02996.17 gi|352682033|ref|YP_004892557.1| - 1.6 8.6 10.5 2.7 7.9 2.9 2.2 1 1 1 2 2 2 0 Prefoldin subunit DHR10 PF18595.1 gi|352682033|ref|YP_004892557.1| - 1.6 8.8 17.4 12 6.0 17.4 2.1 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain Mod_r PF07200.13 gi|352682033|ref|YP_004892557.1| - 1.7 8.8 14.7 0.38 10.9 6.2 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein FlaC_arch PF05377.11 gi|352682033|ref|YP_004892557.1| - 1.8 9.0 6.3 1.1 9.6 2.0 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Nup54 PF13874.6 gi|352682033|ref|YP_004892557.1| - 7.1 6.7 10.7 1.7e+02 2.3 10.7 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF1640 PF07798.11 gi|352682033|ref|YP_004892557.1| - 8.2 6.4 10.7 31 4.5 10.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DUF3450 PF11932.8 gi|352682033|ref|YP_004892557.1| - 8.8 5.6 13.3 4.4 6.5 3.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) DHHA1 PF02272.19 gi|352682035|ref|YP_004892559.1| - 5.6e-09 36.5 0.1 1.2e-08 35.5 0.1 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|352682035|ref|YP_004892559.1| - 5.4e-08 33.0 0.0 9.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 DHH family CbiG_N PF11760.8 gi|352682035|ref|YP_004892559.1| - 0.00049 20.1 0.3 0.0014 18.5 0.3 1.8 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal Ribosomal_L2_C PF03947.18 gi|352682035|ref|YP_004892559.1| - 0.088 13.0 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal Proteins L2, C-terminal domain PhnA_Zn_Ribbon PF08274.12 gi|352682036|ref|YP_004892560.1| - 0.058 13.4 0.7 5.1 7.1 0.0 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ResIII PF04851.15 gi|352682038|ref|YP_004892562.1| - 3.8e-31 108.4 0.0 2.4e-30 105.8 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|352682038|ref|YP_004892562.1| - 5.2e-19 68.6 0.0 1.9e-18 66.8 0.1 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|352682038|ref|YP_004892562.1| - 1.3e-14 53.8 0.1 3.7e-14 52.3 0.1 1.9 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain ERCC3_RAD25_C PF16203.5 gi|352682038|ref|YP_004892562.1| - 4.3e-14 52.3 0.2 6.6e-14 51.7 0.2 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|352682038|ref|YP_004892562.1| - 5.5e-10 39.3 0.0 1.9e-09 37.6 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|352682038|ref|YP_004892562.1| - 1.7e-05 23.7 0.0 0.00043 19.1 0.0 2.7 1 1 1 3 3 3 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|352682038|ref|YP_004892562.1| - 0.085 13.1 0.1 5 7.4 0.0 2.8 3 0 0 3 3 3 0 AAA domain CTP_transf_like PF01467.26 gi|352682039|ref|YP_004892563.1| - 7.3e-08 32.7 0.0 8.1e-08 32.6 0.0 1.2 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|352682039|ref|YP_004892563.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 FAD synthetase Peptidase_M28 PF04389.17 gi|352682040|ref|YP_004892564.1| - 7e-07 29.1 0.0 2.5e-06 27.3 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|352682040|ref|YP_004892564.1| - 6.7e-05 22.8 0.1 0.00014 21.8 0.1 1.5 1 0 0 1 1 1 1 PA domain Aldo_ket_red PF00248.21 gi|352682041|ref|YP_004892565.1| - 1.1e-56 192.2 0.0 3e-46 158.0 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family EamA PF00892.20 gi|352682042|ref|YP_004892566.1| - 1.1e-17 64.5 43.6 3.3e-12 46.7 16.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family UPF0182 PF03699.13 gi|352682042|ref|YP_004892566.1| - 3.4 5.7 4.3 3.8 5.5 4.3 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) NTP_transf_3 PF12804.7 gi|352682043|ref|YP_004892567.1| - 3.8e-38 131.4 0.2 4.7e-38 131.1 0.2 1.0 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|352682043|ref|YP_004892567.1| - 0.00025 21.0 0.0 0.00037 20.5 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.16 gi|352682043|ref|YP_004892567.1| - 0.012 14.8 0.0 0.015 14.5 0.0 1.2 1 0 0 1 1 1 0 Guanylyl transferase CofC like IspD PF01128.19 gi|352682043|ref|YP_004892567.1| - 0.074 12.8 0.0 0.097 12.4 0.0 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase COXG PF06240.13 gi|352682044|ref|YP_004892568.1| - 6.2e-23 81.1 0.0 7.2e-23 80.9 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Exog_C PF18026.1 gi|352682045|ref|YP_004892569.1| - 0.067 13.2 1.0 0.53 10.4 0.2 2.7 2 1 1 3 3 3 0 Endo/exonuclease (EXOG) C-terminal domain tRNA_deacylase PF04414.12 gi|352682046|ref|YP_004892570.1| - 5.8e-31 107.6 0.0 8.9e-31 107.0 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase ADH_N PF08240.12 gi|352682047|ref|YP_004892571.1| - 6.7e-32 109.6 0.1 1e-31 109.0 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|352682047|ref|YP_004892571.1| - 3.5e-16 59.4 0.0 1.7e-14 53.9 0.0 2.3 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|352682047|ref|YP_004892571.1| - 5.6e-13 50.1 0.0 9.9e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|352682047|ref|YP_004892571.1| - 0.0011 18.3 0.6 0.0019 17.6 0.3 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|352682047|ref|YP_004892571.1| - 0.004 16.5 0.1 0.0055 16.0 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|352682047|ref|YP_004892571.1| - 0.0044 16.3 0.1 0.0081 15.4 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352682047|ref|YP_004892571.1| - 0.007 16.9 0.1 0.015 15.8 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|352682047|ref|YP_004892571.1| - 0.015 15.7 0.0 0.029 14.8 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|352682047|ref|YP_004892571.1| - 0.024 14.0 0.1 0.041 13.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|352682047|ref|YP_004892571.1| - 0.038 13.1 0.3 0.064 12.3 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|352682047|ref|YP_004892571.1| - 0.12 11.0 0.1 0.16 10.6 0.1 1.1 1 0 0 1 1 1 0 HI0933-like protein DUF1152 PF06626.12 gi|352682048|ref|YP_004892572.1| - 3.5e-89 298.9 0.1 4e-89 298.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) Peptidase_M20 PF01546.28 gi|352682049|ref|YP_004892573.1| - 6.4e-39 133.8 0.1 8.2e-39 133.4 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|352682049|ref|YP_004892573.1| - 1.1e-19 70.4 0.0 1.7e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF790 PF05626.11 gi|352682050|ref|YP_004892574.1| - 3.6e-98 328.8 0.1 4.1e-98 328.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) UPF0160 PF03690.13 gi|352682051|ref|YP_004892575.1| - 0.015 14.9 0.0 0.096 12.3 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0160) SCP2 PF02036.17 gi|352682052|ref|YP_004892576.1| - 0.0038 17.7 0.0 0.0042 17.5 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family Peptidase_M20 PF01546.28 gi|352682053|ref|YP_004892577.1| - 8.4e-37 126.9 0.0 1.6e-36 126.0 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|352682053|ref|YP_004892577.1| - 7.3e-18 64.5 0.0 2.2e-17 63.0 0.0 1.8 1 1 0 1 1 1 1 Peptidase dimerisation domain DUF3311 PF11755.8 gi|352682054|ref|YP_004892578.1| - 8.1e-11 41.7 7.3 1e-10 41.4 7.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) DUF4293 PF14126.6 gi|352682054|ref|YP_004892578.1| - 0.051 13.8 0.5 0.06 13.6 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) DUF4212 PF13937.6 gi|352682054|ref|YP_004892578.1| - 0.13 12.6 7.5 0.17 12.2 7.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4212) SSF PF00474.17 gi|352682055|ref|YP_004892579.1| - 1.2e-10 40.9 34.0 3.8e-09 35.9 34.0 2.5 1 1 0 1 1 1 1 Sodium:solute symporter family Class_IIIsignal PF04021.12 gi|352682056|ref|YP_004892580.1| - 0.00013 21.8 6.6 0.00044 20.1 5.4 2.4 2 0 0 2 2 2 1 Class III signal peptide Arch_flagellin PF01917.16 gi|352682056|ref|YP_004892580.1| - 0.84 9.8 4.7 7.5 6.7 4.7 2.1 1 1 0 1 1 1 0 Archaebacterial flagellin Lactamase_B_3 PF13483.6 gi|352682057|ref|YP_004892581.1| - 1.7e-06 28.0 0.0 2.6e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|352682057|ref|YP_004892581.1| - 0.00071 19.1 0.0 0.0015 18.1 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|352682057|ref|YP_004892581.1| - 0.041 13.9 0.2 0.17 11.9 0.1 1.9 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily MS_channel PF00924.18 gi|352682058|ref|YP_004892582.1| - 1.9e-18 66.8 1.7 3.3e-18 66.0 1.7 1.5 1 0 0 1 1 1 1 Mechanosensitive ion channel Aminotran_1_2 PF00155.21 gi|352682059|ref|YP_004892583.1| - 7.9e-58 196.4 0.0 9e-58 196.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|352682059|ref|YP_004892583.1| - 8.5e-09 34.4 0.0 1.2e-08 33.9 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|352682059|ref|YP_004892583.1| - 9.9e-07 28.4 0.0 1.6e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|352682059|ref|YP_004892583.1| - 1.2e-05 24.4 0.0 2.7e-05 23.3 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V Radical_SAM PF04055.21 gi|352682059|ref|YP_004892583.1| - 0.14 12.5 0.0 3.3 8.1 0.0 2.5 1 1 0 2 2 2 0 Radical SAM superfamily Glyco_hydro_57 PF03065.15 gi|352682060|ref|YP_004892584.1| - 1.1e-21 77.4 0.0 2e-21 76.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF3536 PF12055.8 gi|352682060|ref|YP_004892584.1| - 8.2e-19 68.0 0.1 1.4e-18 67.2 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3536) DEAD PF00270.29 gi|352682061|ref|YP_004892585.1| - 1.6e-29 102.9 0.0 3.7e-29 101.7 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|352682061|ref|YP_004892585.1| - 4.4e-18 65.6 0.7 2.4e-17 63.3 0.3 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|352682061|ref|YP_004892585.1| - 4.1e-16 59.4 0.0 1.3e-15 57.7 0.0 1.9 1 0 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|352682061|ref|YP_004892585.1| - 3.4e-09 37.0 0.0 7.1e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|352682061|ref|YP_004892585.1| - 0.0023 18.2 0.1 0.0086 16.4 0.1 2.0 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|352682061|ref|YP_004892585.1| - 0.0035 17.7 0.1 0.044 14.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain SecA_DEAD PF07517.14 gi|352682061|ref|YP_004892585.1| - 0.0066 15.8 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain TarH PF02203.15 gi|352682061|ref|YP_004892585.1| - 0.053 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Tar ligand binding domain homologue AAA_11 PF13086.6 gi|352682061|ref|YP_004892585.1| - 0.068 12.9 0.5 0.17 11.7 0.0 1.9 2 1 1 3 3 3 0 AAA domain UvrD-helicase PF00580.21 gi|352682061|ref|YP_004892585.1| - 0.088 12.3 0.4 0.21 11.0 0.0 1.8 3 0 0 3 3 3 0 UvrD/REP helicase N-terminal domain RIC1 PF07064.13 gi|352682061|ref|YP_004892585.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 RIC1 UBA PF00627.31 gi|352682061|ref|YP_004892585.1| - 0.14 12.1 0.0 21 5.1 0.0 3.4 3 0 0 3 3 3 0 UBA/TS-N domain SBP_bac_11 PF13531.6 gi|352682063|ref|YP_004892587.1| - 3e-33 115.5 0.0 3.6e-33 115.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|352682064|ref|YP_004892588.1| - 1.6e-22 80.1 14.0 1.6e-22 80.1 14.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|352682065|ref|YP_004892589.1| - 6.7e-32 110.9 0.0 9.9e-32 110.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352682065|ref|YP_004892589.1| - 1.5e-08 34.8 0.7 8.2e-05 22.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352682065|ref|YP_004892589.1| - 4.2e-06 26.4 0.0 0.00036 20.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352682065|ref|YP_004892589.1| - 0.00026 21.3 0.1 0.0011 19.2 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352682065|ref|YP_004892589.1| - 0.00088 19.7 0.0 0.0016 18.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|352682065|ref|YP_004892589.1| - 0.0012 18.8 0.1 0.0025 17.7 0.1 1.5 1 0 0 1 1 1 1 NACHT domain AAA_23 PF13476.6 gi|352682065|ref|YP_004892589.1| - 0.0017 18.9 0.0 0.0022 18.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|352682065|ref|YP_004892589.1| - 0.0019 17.9 0.0 0.0046 16.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|352682065|ref|YP_004892589.1| - 0.0027 16.8 0.0 0.005 15.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|352682065|ref|YP_004892589.1| - 0.0028 17.4 0.2 0.0053 16.5 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|352682065|ref|YP_004892589.1| - 0.0061 16.5 0.0 0.067 13.1 0.0 2.1 2 0 0 2 2 2 1 NTPase AAA_15 PF13175.6 gi|352682065|ref|YP_004892589.1| - 0.011 15.5 0.0 0.015 15.0 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|352682065|ref|YP_004892589.1| - 0.011 15.3 0.0 0.028 14.0 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|352682065|ref|YP_004892589.1| - 0.011 15.8 0.0 0.024 14.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|352682065|ref|YP_004892589.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|352682065|ref|YP_004892589.1| - 0.016 14.5 0.0 0.034 13.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin SbcCD_C PF13558.6 gi|352682065|ref|YP_004892589.1| - 0.02 15.1 0.1 0.34 11.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|352682065|ref|YP_004892589.1| - 0.021 14.7 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|352682065|ref|YP_004892589.1| - 0.026 14.6 0.0 0.048 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|352682065|ref|YP_004892589.1| - 0.026 14.9 0.0 0.053 13.9 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|352682065|ref|YP_004892589.1| - 0.039 13.6 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|352682065|ref|YP_004892589.1| - 0.039 13.7 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|352682065|ref|YP_004892589.1| - 0.043 13.4 0.2 0.07 12.7 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|352682065|ref|YP_004892589.1| - 0.069 13.0 0.2 0.16 11.9 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase NB-ARC PF00931.22 gi|352682065|ref|YP_004892589.1| - 0.078 12.1 0.2 0.31 10.2 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain PIF1 PF05970.14 gi|352682065|ref|YP_004892589.1| - 0.12 11.5 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase ATP_bind_1 PF03029.17 gi|352682065|ref|YP_004892589.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_13 PF13166.6 gi|352682065|ref|YP_004892589.1| - 0.15 10.7 0.0 0.19 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|352682065|ref|YP_004892589.1| - 0.15 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF2663 PF10864.8 gi|352682066|ref|YP_004892590.1| - 0.058 13.8 3.8 0.065 13.6 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2663) DUF3951 PF13131.6 gi|352682066|ref|YP_004892590.1| - 0.17 12.1 1.0 0.17 12.1 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) ATP-synt_C PF00137.21 gi|352682066|ref|YP_004892590.1| - 7.5 7.0 12.1 6.5 7.2 2.4 2.2 1 1 1 2 2 2 0 ATP synthase subunit C FeoB_associated PF12669.7 gi|352682066|ref|YP_004892590.1| - 8.4 6.9 11.5 8.9 6.8 1.4 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein Phos_pyr_kin PF08543.12 gi|352682067|ref|YP_004892591.1| - 1.3e-93 312.9 0.2 1.6e-93 312.6 0.2 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|352682067|ref|YP_004892591.1| - 3.8e-62 208.7 0.1 8.3e-62 207.6 0.1 1.6 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|352682067|ref|YP_004892591.1| - 1.4e-13 50.9 0.1 2.2e-13 50.2 0.1 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|352682067|ref|YP_004892591.1| - 0.0026 17.3 0.2 0.004 16.7 0.2 1.4 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|352682067|ref|YP_004892591.1| - 0.14 11.5 0.2 0.37 10.1 0.2 1.7 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family tRNA-synt_1 PF00133.22 gi|352682068|ref|YP_004892592.1| - 1.6e-160 535.3 0.9 2.1e-160 534.9 0.9 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|352682068|ref|YP_004892592.1| - 1.8e-30 105.9 1.8 2e-30 105.8 0.4 1.9 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|352682068|ref|YP_004892592.1| - 3.1e-23 82.2 0.3 1.1e-08 34.2 0.2 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|352682068|ref|YP_004892592.1| - 2.7e-09 36.8 0.0 5.9e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|352682068|ref|YP_004892592.1| - 4.3e-07 29.6 0.0 3.2e-05 23.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|352682068|ref|YP_004892592.1| - 2.6e-05 23.3 0.0 0.00017 20.7 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (K) RHH_1 PF01402.21 gi|352682068|ref|YP_004892592.1| - 0.22 11.5 3.2 1.8 8.6 0.6 3.1 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family HscB_4_cys PF18256.1 gi|352682068|ref|YP_004892592.1| - 2 8.3 5.7 3.4 7.5 0.7 2.4 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif PTH2 PF01981.16 gi|352682069|ref|YP_004892593.1| - 3.2e-41 140.3 0.0 3.5e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 NUDIX PF00293.28 gi|352682070|ref|YP_004892594.1| - 8.2e-14 51.8 0.1 9.2e-14 51.6 0.1 1.0 1 0 0 1 1 1 1 NUDIX domain Sdh_cyt PF01127.22 gi|352682071|ref|YP_004892595.1| - 0.00023 21.2 3.2 0.00038 20.5 3.2 1.4 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TRIQK PF15168.6 gi|352682071|ref|YP_004892595.1| - 0.41 10.6 0.1 0.41 10.6 0.1 2.1 2 0 0 2 2 2 0 Triple QxxK/R motif-containing protein family DUF2207 PF09972.9 gi|352682071|ref|YP_004892595.1| - 2 7.1 5.4 2.3 6.9 5.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Sigma_reg_N PF13800.6 gi|352682071|ref|YP_004892595.1| - 4.7 7.6 6.9 8.8 6.7 0.5 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Sdh_cyt PF01127.22 gi|352682072|ref|YP_004892596.1| - 4.3e-09 36.5 4.6 8.3e-09 35.5 4.6 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Fer2_3 PF13085.6 gi|352682073|ref|YP_004892597.1| - 2.5e-34 117.6 0.1 4e-34 116.9 0.1 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|352682073|ref|YP_004892597.1| - 1.2e-12 48.1 1.1 1.2e-12 48.1 1.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352682073|ref|YP_004892597.1| - 6.6e-10 39.0 1.7 6.6e-10 39.0 1.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352682073|ref|YP_004892597.1| - 6.2e-07 29.9 0.9 6.2e-07 29.9 0.9 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352682073|ref|YP_004892597.1| - 1.5e-06 28.2 2.0 1.5e-06 28.2 2.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682073|ref|YP_004892597.1| - 3e-06 27.7 16.8 4.1e-05 24.1 5.7 2.6 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352682073|ref|YP_004892597.1| - 6.1e-06 27.1 3.5 8e-06 26.7 1.1 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|352682073|ref|YP_004892597.1| - 1.5e-05 24.6 2.6 1.5e-05 24.6 2.6 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.27 gi|352682073|ref|YP_004892597.1| - 9.2e-05 22.3 0.3 9.2e-05 22.3 0.3 2.0 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_2 PF12797.7 gi|352682073|ref|YP_004892597.1| - 0.00092 19.2 1.4 0.00092 19.2 1.4 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|352682073|ref|YP_004892597.1| - 0.001 19.2 2.7 0.21 11.8 0.1 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352682073|ref|YP_004892597.1| - 0.0021 18.4 0.7 0.0021 18.4 0.7 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352682073|ref|YP_004892597.1| - 0.016 15.4 0.9 0.016 15.4 0.9 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352682073|ref|YP_004892597.1| - 0.043 13.9 4.0 0.043 13.9 4.0 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|352682073|ref|YP_004892597.1| - 0.045 13.5 0.3 2.3 8.0 0.1 2.3 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|352682073|ref|YP_004892597.1| - 0.073 14.0 5.6 0.073 14.0 5.6 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|352682074|ref|YP_004892598.1| - 7.4e-110 367.9 0.9 8.8e-110 367.6 0.9 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|352682074|ref|YP_004892598.1| - 8.5e-39 132.5 0.0 1.5e-38 131.7 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|352682074|ref|YP_004892598.1| - 7.6e-05 22.1 0.3 0.00057 19.2 0.3 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|352682074|ref|YP_004892598.1| - 0.00088 18.9 0.3 0.0029 17.2 0.1 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|352682074|ref|YP_004892598.1| - 0.012 14.9 1.4 1 8.6 0.3 3.0 3 0 0 3 3 3 0 Thi4 family GIDA PF01134.22 gi|352682074|ref|YP_004892598.1| - 0.026 13.6 1.5 0.51 9.3 0.8 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|352682074|ref|YP_004892598.1| - 0.11 11.8 1.7 1.5 8.1 1.3 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF364 PF04016.12 gi|352682075|ref|YP_004892599.1| - 0.032 13.8 0.0 0.046 13.3 0.0 1.2 1 0 0 1 1 1 0 Putative heavy-metal chelation DUF3254 PF11630.8 gi|352682076|ref|YP_004892600.1| - 0.042 14.0 0.0 0.051 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3254) SLT_L PF14718.6 gi|352682076|ref|YP_004892600.1| - 0.097 12.8 0.2 0.14 12.3 0.2 1.2 1 0 0 1 1 1 0 Soluble lytic murein transglycosylase L domain PCNA_C PF02747.15 gi|352682078|ref|YP_004892602.1| - 1e-10 41.8 0.2 1.6e-10 41.2 0.2 1.3 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|352682078|ref|YP_004892602.1| - 1.1e-09 38.0 0.0 2.4e-09 36.9 0.0 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain YpM PF09144.10 gi|352682078|ref|YP_004892602.1| - 0.13 12.4 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 Yersinia pseudo-tuberculosis mitogen TPPK_C PF12555.8 gi|352682079|ref|YP_004892603.1| - 0.024 14.7 2.4 0.063 13.3 2.4 1.7 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal CBS PF00571.28 gi|352682080|ref|YP_004892604.1| - 2.9e-26 91.7 5.2 4.6e-15 55.8 0.8 2.1 2 0 0 2 2 2 2 CBS domain VWA PF00092.28 gi|352682081|ref|YP_004892605.1| - 0.00012 22.4 0.3 0.00036 20.8 0.3 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|352682081|ref|YP_004892605.1| - 0.0013 19.4 0.1 0.0045 17.6 0.1 2.0 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|352682081|ref|YP_004892605.1| - 0.051 13.0 0.5 0.27 10.6 0.5 1.9 1 1 0 1 1 1 0 VWA domain containing CoxE-like protein AAA_5 PF07728.14 gi|352682082|ref|YP_004892606.1| - 6.5e-26 91.0 0.1 1.6e-25 89.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|352682082|ref|YP_004892606.1| - 2e-05 25.0 0.1 9.1e-05 22.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|352682082|ref|YP_004892606.1| - 0.00027 20.8 0.0 0.00049 20.0 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|352682082|ref|YP_004892606.1| - 0.00037 19.9 0.0 0.0013 18.1 0.0 1.8 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|352682082|ref|YP_004892606.1| - 0.0056 16.4 0.0 0.01 15.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|352682082|ref|YP_004892606.1| - 0.0064 16.9 0.0 0.019 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain Tugs PF17840.1 gi|352682082|ref|YP_004892606.1| - 0.044 14.0 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 Tethering Ubl4a to BAGS domain AAA_30 PF13604.6 gi|352682082|ref|YP_004892606.1| - 0.086 12.6 0.0 0.37 10.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|352682082|ref|YP_004892606.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region HCV_NS4a PF01006.20 gi|352682082|ref|YP_004892606.1| - 0.17 11.6 0.0 0.47 10.2 0.0 1.7 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein NS4a HTH_5 PF01022.20 gi|352682084|ref|YP_004892608.1| - 9.1e-14 51.1 0.2 1.3e-13 50.6 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|352682084|ref|YP_004892608.1| - 1.8e-12 47.1 0.1 2.6e-12 46.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|352682084|ref|YP_004892608.1| - 1.7e-07 31.0 0.4 1.2e-06 28.3 0.3 2.3 2 1 0 2 2 2 1 MarR family TrmB PF01978.19 gi|352682084|ref|YP_004892608.1| - 2.9e-07 30.3 0.1 4e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|352682084|ref|YP_004892608.1| - 3e-07 30.3 0.8 3.9e-06 26.7 0.2 2.1 1 1 1 2 2 2 1 Ribonuclease R winged-helix domain HTH_11 PF08279.12 gi|352682084|ref|YP_004892608.1| - 3.3e-05 23.8 0.0 4.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|352682084|ref|YP_004892608.1| - 3.5e-05 23.3 0.0 5.4e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|352682084|ref|YP_004892608.1| - 0.00035 20.3 0.4 0.0027 17.5 0.4 2.2 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|352682084|ref|YP_004892608.1| - 0.00093 19.2 0.1 0.0015 18.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_45 PF14947.6 gi|352682084|ref|YP_004892608.1| - 0.0011 18.9 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|352682084|ref|YP_004892608.1| - 0.0011 19.3 0.0 0.0014 18.9 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|352682084|ref|YP_004892608.1| - 0.0011 19.1 0.0 0.0025 18.0 0.0 1.5 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|352682084|ref|YP_004892608.1| - 0.0014 18.7 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain DUF4423 PF14394.6 gi|352682084|ref|YP_004892608.1| - 0.0016 18.1 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) GntR PF00392.21 gi|352682084|ref|YP_004892608.1| - 0.0022 17.6 0.0 0.0038 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|352682084|ref|YP_004892608.1| - 0.0022 18.4 0.1 0.019 15.4 0.1 2.0 1 1 1 2 2 2 1 Winged helix DNA-binding domain FeoC PF09012.10 gi|352682084|ref|YP_004892608.1| - 0.0024 17.9 0.0 0.0032 17.5 0.0 1.1 1 0 0 1 1 1 1 FeoC like transcriptional regulator DUF4116 PF13475.6 gi|352682084|ref|YP_004892608.1| - 0.0027 17.4 0.0 0.1 12.3 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4116) MarR PF01047.22 gi|352682084|ref|YP_004892608.1| - 0.0032 17.4 0.1 0.0052 16.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|352682084|ref|YP_004892608.1| - 0.0036 17.0 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|352682084|ref|YP_004892608.1| - 0.0037 17.2 0.0 0.0037 17.2 0.0 1.1 1 0 0 1 1 1 1 N-terminal phage replisome organiser (Phage_rep_org_N) B-block_TFIIIC PF04182.12 gi|352682084|ref|YP_004892608.1| - 0.0065 16.6 0.0 0.0099 16.0 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF2250 PF10007.9 gi|352682084|ref|YP_004892608.1| - 0.0066 16.5 0.0 0.0087 16.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) NUMOD1 PF07453.13 gi|352682084|ref|YP_004892608.1| - 0.011 16.0 0.1 0.36 11.2 0.0 2.1 2 0 0 2 2 2 0 NUMOD1 domain Penicillinase_R PF03965.16 gi|352682084|ref|YP_004892608.1| - 0.026 14.9 0.0 0.032 14.6 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.16 gi|352682084|ref|YP_004892608.1| - 0.026 14.3 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|352682084|ref|YP_004892608.1| - 0.029 14.3 0.1 0.04 13.9 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FaeA PF04703.12 gi|352682084|ref|YP_004892608.1| - 0.042 14.2 0.0 0.05 14.0 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_28 PF13518.6 gi|352682084|ref|YP_004892608.1| - 0.052 13.7 0.0 0.087 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain BLACT_WH PF17778.1 gi|352682084|ref|YP_004892608.1| - 0.08 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain Sulfolobus_pRN PF05584.11 gi|352682084|ref|YP_004892608.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2089 PF09862.9 gi|352682084|ref|YP_004892608.1| - 0.13 12.4 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) DUF2845 PF11006.8 gi|352682086|ref|YP_004892610.1| - 0.14 12.3 0.0 0.76 9.9 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2845) DCX PF03607.17 gi|352682086|ref|YP_004892610.1| - 0.18 12.0 0.0 0.93 9.6 0.0 2.1 2 0 0 2 2 2 0 Doublecortin zf-CDGSH PF09360.10 gi|352682087|ref|YP_004892611.1| - 4.9e-13 49.1 0.2 5.9e-13 48.8 0.2 1.1 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type DUF2530 PF10745.9 gi|352682088|ref|YP_004892612.1| - 1.6 9.0 5.6 15 5.9 0.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) HhH-GPD PF00730.25 gi|352682089|ref|YP_004892613.1| - 2.5e-21 76.2 0.0 3.2e-21 75.8 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|352682089|ref|YP_004892613.1| - 0.00034 20.3 0.5 0.00094 18.9 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|352682089|ref|YP_004892613.1| - 0.0012 19.4 0.1 0.072 13.7 0.0 2.3 1 1 1 2 2 2 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.9 gi|352682089|ref|YP_004892613.1| - 0.0026 18.0 6.9 0.0046 17.3 6.9 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III Transposase_20 PF02371.16 gi|352682089|ref|YP_004892613.1| - 0.12 12.7 0.0 0.36 11.2 0.0 1.9 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family RHH_4 PF13467.6 gi|352682090|ref|YP_004892614.1| - 0.056 13.3 0.1 2.7 7.9 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix domain HTH_AsnC-type PF13404.6 gi|352682090|ref|YP_004892614.1| - 1.6 8.7 4.9 0.46 10.3 0.3 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Death PF00531.22 gi|352682091|ref|YP_004892615.1| - 0.0097 16.1 0.0 0.026 14.7 0.0 1.7 1 0 0 1 1 1 1 Death domain Herpes_Helicase PF02689.14 gi|352682091|ref|YP_004892615.1| - 0.01 13.8 0.0 0.014 13.3 0.0 1.1 1 0 0 1 1 1 0 Helicase AAA_16 PF13191.6 gi|352682091|ref|YP_004892615.1| - 0.13 12.7 0.1 0.23 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain Peptidase_M32 PF02074.15 gi|352682092|ref|YP_004892616.1| - 1.8e-164 548.1 0.0 2.1e-164 547.9 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase MarR_2 PF12802.7 gi|352682093|ref|YP_004892617.1| - 9.5e-08 31.8 1.0 1.8e-07 30.9 1.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|352682093|ref|YP_004892617.1| - 9.8e-06 25.3 0.3 4.6e-05 23.2 0.3 2.1 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|352682093|ref|YP_004892617.1| - 1.4e-05 25.0 0.4 2.5e-05 24.2 0.4 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|352682093|ref|YP_004892617.1| - 3.9e-05 23.1 1.0 6.9e-05 22.3 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|352682093|ref|YP_004892617.1| - 0.00012 22.0 0.0 0.001 19.0 0.0 2.4 2 1 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|352682093|ref|YP_004892617.1| - 0.00013 22.0 1.6 0.00032 20.7 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain RP-C PF03428.13 gi|352682093|ref|YP_004892617.1| - 0.00037 20.2 0.1 0.00062 19.5 0.1 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain HTH_11 PF08279.12 gi|352682093|ref|YP_004892617.1| - 0.0043 17.0 0.6 0.022 14.7 0.0 2.4 2 0 0 2 2 2 1 HTH domain HTH_28 PF13518.6 gi|352682093|ref|YP_004892617.1| - 0.009 16.1 0.1 0.31 11.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|352682093|ref|YP_004892617.1| - 0.013 15.3 2.4 0.049 13.4 1.7 2.2 2 1 0 2 2 1 0 IclR helix-turn-helix domain MarR PF01047.22 gi|352682093|ref|YP_004892617.1| - 0.02 14.8 0.1 0.037 14.0 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.12 gi|352682093|ref|YP_004892617.1| - 0.022 14.5 1.3 2.4 8.0 0.1 2.6 2 0 0 2 2 2 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|352682093|ref|YP_004892617.1| - 0.023 14.4 3.6 0.18 11.6 3.6 2.2 1 1 0 1 1 1 0 LexA DNA binding domain Sigma70_r4_2 PF08281.12 gi|352682093|ref|YP_004892617.1| - 0.026 14.2 0.0 0.13 12.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|352682093|ref|YP_004892617.1| - 0.031 14.1 0.1 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain TrmB PF01978.19 gi|352682093|ref|YP_004892617.1| - 0.041 13.8 0.5 0.49 10.3 0.0 2.6 3 1 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_8 PF02954.19 gi|352682093|ref|YP_004892617.1| - 0.063 13.1 1.9 0.11 12.3 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family HTH_27 PF13463.6 gi|352682093|ref|YP_004892617.1| - 0.076 13.5 2.7 0.23 12.0 1.0 2.5 2 1 0 2 2 2 0 Winged helix DNA-binding domain Thg1 PF04446.12 gi|352682094|ref|YP_004892618.1| - 4.4e-11 42.9 0.0 6e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase Thiolase_N PF00108.23 gi|352682095|ref|YP_004892619.1| - 5.1e-79 265.3 0.0 6.4e-79 265.0 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|352682095|ref|YP_004892619.1| - 4.9e-37 126.3 0.1 4e-36 123.4 0.0 2.3 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|352682095|ref|YP_004892619.1| - 1.3e-06 28.2 1.3 3.9e-06 26.6 0.4 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain DUF716 PF04819.12 gi|352682097|ref|YP_004892621.1| - 0.064 12.9 0.4 0.26 10.9 0.4 1.9 1 1 0 1 1 1 0 Family of unknown function (DUF716) MAF_flag10 PF01973.18 gi|352682101|ref|YP_004892625.1| - 3.7e-12 46.3 0.0 5.7e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 T2SSE PF00437.20 gi|352682104|ref|YP_004892628.1| - 1.7e-35 122.5 0.0 2.4e-35 121.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|352682104|ref|YP_004892628.1| - 0.00011 21.8 0.0 0.00025 20.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.18 gi|352682104|ref|YP_004892628.1| - 0.00027 20.4 0.1 0.0006 19.2 0.0 1.6 2 0 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.27 gi|352682104|ref|YP_004892628.1| - 0.0024 18.4 0.0 0.006 17.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|352682104|ref|YP_004892628.1| - 0.0025 18.4 0.0 0.0045 17.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|352682104|ref|YP_004892628.1| - 0.004 16.7 0.0 0.0075 15.9 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|352682104|ref|YP_004892628.1| - 0.0069 16.7 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|352682104|ref|YP_004892628.1| - 0.0073 16.6 0.3 0.037 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|352682104|ref|YP_004892628.1| - 0.02 14.7 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Pox_A32 PF04665.12 gi|352682104|ref|YP_004892628.1| - 0.022 14.2 0.1 0.042 13.3 0.1 1.4 1 0 0 1 1 1 0 Poxvirus A32 protein Mg_chelatase PF01078.21 gi|352682104|ref|YP_004892628.1| - 0.022 14.1 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MMR_HSR1 PF01926.23 gi|352682104|ref|YP_004892628.1| - 0.051 13.7 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|352682104|ref|YP_004892628.1| - 0.054 13.8 0.0 0.19 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|352682104|ref|YP_004892628.1| - 0.061 13.7 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|352682104|ref|YP_004892628.1| - 0.076 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.12 gi|352682104|ref|YP_004892628.1| - 0.078 12.9 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|352682104|ref|YP_004892628.1| - 0.08 12.8 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Septin PF00735.18 gi|352682104|ref|YP_004892628.1| - 0.09 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Septin PduV-EutP PF10662.9 gi|352682104|ref|YP_004892628.1| - 0.13 12.0 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|352682104|ref|YP_004892628.1| - 0.19 11.6 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Dynamin_N PF00350.23 gi|352682104|ref|YP_004892628.1| - 0.19 11.7 0.0 0.3 11.1 0.0 1.3 1 0 0 1 1 1 0 Dynamin family Borrelia_lipo_1 PF05714.11 gi|352682105|ref|YP_004892629.1| - 0.0012 18.6 0.5 0.0014 18.5 0.5 1.0 1 0 0 1 1 1 1 Borrelia burgdorferi virulent strain associated lipoprotein UPF0126 PF03458.13 gi|352682106|ref|YP_004892630.1| - 0.0076 16.1 2.7 0.014 15.3 2.6 1.5 1 1 0 1 1 1 1 UPF0126 domain Acid_phosphat_B PF03767.14 gi|352682107|ref|YP_004892631.1| - 1.6e-09 37.7 0.0 1.7e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase PF00702.26 gi|352682107|ref|YP_004892631.1| - 0.0025 18.1 0.0 0.022 15.0 0.0 1.9 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|352682107|ref|YP_004892631.1| - 0.0071 16.1 0.1 0.033 13.9 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|352682107|ref|YP_004892631.1| - 0.023 14.2 0.0 0.13 11.8 0.0 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2608) Hydrolase_6 PF13344.6 gi|352682107|ref|YP_004892631.1| - 0.076 13.1 0.0 0.69 10.1 0.0 2.3 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase RHH_1 PF01402.21 gi|352682108|ref|YP_004892632.1| - 0.14 12.2 2.3 0.56 10.2 0.6 2.5 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family Epimerase PF01370.21 gi|352682109|ref|YP_004892633.1| - 6.4e-21 74.9 0.0 8.6e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|352682109|ref|YP_004892633.1| - 1.7e-10 40.5 0.0 2.6e-10 39.9 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|352682109|ref|YP_004892633.1| - 1.7e-08 34.3 0.0 4.7e-07 29.5 0.0 2.3 2 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|352682109|ref|YP_004892633.1| - 1.5e-07 30.7 0.0 3e-07 29.8 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|352682109|ref|YP_004892633.1| - 2e-07 31.1 0.0 3.1e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|352682109|ref|YP_004892633.1| - 6.7e-05 22.2 0.0 0.00084 18.6 0.0 2.2 1 1 1 2 2 2 1 Male sterility protein NAD_binding_2 PF03446.15 gi|352682109|ref|YP_004892633.1| - 0.00082 19.6 0.0 0.0015 18.8 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase KR PF08659.10 gi|352682109|ref|YP_004892633.1| - 0.0034 17.3 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 KR domain Pyr_redox PF00070.27 gi|352682109|ref|YP_004892633.1| - 0.017 15.6 0.1 0.034 14.7 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_trans_4_4 PF13579.6 gi|352682109|ref|YP_004892633.1| - 0.031 14.7 1.2 0.16 12.4 0.4 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|352682109|ref|YP_004892633.1| - 0.042 13.8 0.3 0.089 12.8 0.1 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 TolB_like PF15869.5 gi|352682109|ref|YP_004892633.1| - 0.1 11.8 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 TolB-like 6-blade propeller-like NmrA PF05368.13 gi|352682109|ref|YP_004892633.1| - 0.14 11.7 0.0 1.2 8.7 0.0 2.0 2 0 0 2 2 2 0 NmrA-like family F420_oxidored PF03807.17 gi|352682109|ref|YP_004892633.1| - 0.15 12.7 0.0 0.32 11.6 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ABC_tran PF00005.27 gi|352682110|ref|YP_004892634.1| - 1.1e-19 71.3 0.0 1.8e-19 70.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352682110|ref|YP_004892634.1| - 2.3e-09 37.5 0.0 3.3e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|352682110|ref|YP_004892634.1| - 1.2e-08 35.7 0.4 2.2e-08 34.9 0.0 1.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|352682110|ref|YP_004892634.1| - 5.4e-07 29.3 0.0 0.00066 19.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|352682110|ref|YP_004892634.1| - 6.3e-07 29.4 0.1 0.00017 21.5 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain AAA_29 PF13555.6 gi|352682110|ref|YP_004892634.1| - 0.00019 21.1 1.2 0.00024 20.8 0.1 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|352682110|ref|YP_004892634.1| - 0.0027 16.5 0.0 0.0031 16.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352682110|ref|YP_004892634.1| - 0.015 15.7 0.0 0.03 14.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|352682110|ref|YP_004892634.1| - 0.033 14.0 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 MukB N-terminal NACHT PF05729.12 gi|352682110|ref|YP_004892634.1| - 0.034 14.0 0.0 0.072 13.0 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_14 PF13173.6 gi|352682110|ref|YP_004892634.1| - 0.096 12.7 0.1 0.38 10.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|352682110|ref|YP_004892634.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|352682110|ref|YP_004892634.1| - 0.12 12.8 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.6 gi|352682110|ref|YP_004892634.1| - 0.13 12.5 0.1 0.29 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|352682110|ref|YP_004892634.1| - 0.17 11.5 0.0 0.3 10.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain MutS_V PF00488.21 gi|352682110|ref|YP_004892634.1| - 0.19 11.8 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 MutS domain V Rad17 PF03215.15 gi|352682110|ref|YP_004892634.1| - 0.23 11.3 0.2 0.82 9.6 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|352682110|ref|YP_004892634.1| - 0.25 11.2 0.0 0.27 11.1 0.0 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea SBP_bac_11 PF13531.6 gi|352682111|ref|YP_004892635.1| - 1.4e-21 77.3 0.1 1.9e-21 76.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TrmO PF01980.16 gi|352682112|ref|YP_004892636.1| - 2.2e-30 105.3 0.0 2.8e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O BPD_transp_1 PF00528.22 gi|352682113|ref|YP_004892637.1| - 2e-07 31.0 15.3 2e-07 31.0 15.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TrmB PF01978.19 gi|352682114|ref|YP_004892638.1| - 1.2e-05 25.0 0.0 2.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|352682114|ref|YP_004892638.1| - 0.0006 20.1 0.0 0.00095 19.5 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor Sulfolobus_pRN PF05584.11 gi|352682114|ref|YP_004892638.1| - 0.0056 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein Replic_Relax PF13814.6 gi|352682114|ref|YP_004892638.1| - 0.01 15.9 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Replication-relaxation MarR_2 PF12802.7 gi|352682114|ref|YP_004892638.1| - 0.034 14.0 0.1 0.053 13.4 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.6 gi|352682114|ref|YP_004892638.1| - 0.043 13.4 0.1 0.072 12.7 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|352682114|ref|YP_004892638.1| - 0.049 13.4 0.1 0.076 12.8 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF3489 PF11994.8 gi|352682114|ref|YP_004892638.1| - 0.095 12.8 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) MarR PF01047.22 gi|352682114|ref|YP_004892638.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 MarR family Sod_Fe_C PF02777.18 gi|352682115|ref|YP_004892639.1| - 4e-16 59.0 3.1 4.1e-16 59.0 3.1 1.0 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain DUF2791 PF10923.8 gi|352682115|ref|YP_004892639.1| - 0.12 11.2 0.0 0.12 11.2 0.0 1.0 1 0 0 1 1 1 0 P-loop Domain of unknown function (DUF2791) Sod_Fe_N PF00081.22 gi|352682116|ref|YP_004892640.1| - 1e-28 99.6 0.0 1.4e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|352682116|ref|YP_004892640.1| - 7.4e-08 32.5 0.0 1.1e-07 31.9 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain zf-FCS PF06467.14 gi|352682117|ref|YP_004892641.1| - 0.11 12.5 0.4 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif PPDK_N PF01326.19 gi|352682118|ref|YP_004892642.1| - 2.9e-115 385.0 0.2 4.3e-115 384.5 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|352682118|ref|YP_004892642.1| - 3.6e-77 259.4 0.0 5.8e-77 258.7 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|352682118|ref|YP_004892642.1| - 3.5e-28 97.1 0.1 9.4e-28 95.7 0.1 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.21 gi|352682118|ref|YP_004892642.1| - 0.033 14.6 0.0 2.9 8.2 0.0 3.3 2 2 1 3 3 3 0 Radical SAM superfamily Peptidase_M22 PF00814.25 gi|352682119|ref|YP_004892643.1| - 6.9e-73 245.7 0.1 8.4e-73 245.4 0.1 1.1 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S27 PF01599.19 gi|352682120|ref|YP_004892644.1| - 5.3e-10 39.3 0.5 6e-10 39.1 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a OrfB_Zn_ribbon PF07282.11 gi|352682120|ref|YP_004892644.1| - 0.00042 20.2 0.0 0.00047 20.0 0.0 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain GFA PF04828.14 gi|352682120|ref|YP_004892644.1| - 0.0014 19.0 1.9 0.1 12.9 0.1 2.1 1 1 1 2 2 2 2 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS1595 PF12760.7 gi|352682120|ref|YP_004892644.1| - 0.0017 18.3 2.7 0.002 18.1 2.7 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|352682120|ref|YP_004892644.1| - 0.002 18.0 3.8 0.006 16.5 3.8 1.8 1 1 0 1 1 1 1 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|352682120|ref|YP_004892644.1| - 0.0032 17.1 6.6 0.0073 15.9 1.0 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|352682120|ref|YP_004892644.1| - 0.0066 16.3 0.7 0.013 15.3 0.7 1.5 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf_UBZ PF18439.1 gi|352682120|ref|YP_004892644.1| - 0.011 15.3 1.1 0.51 10.0 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|352682120|ref|YP_004892644.1| - 0.017 14.5 2.7 0.36 10.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|352682120|ref|YP_004892644.1| - 0.022 14.5 4.0 0.18 11.6 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|352682120|ref|YP_004892644.1| - 0.037 14.1 1.7 0.058 13.4 1.7 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|352682120|ref|YP_004892644.1| - 0.04 13.8 4.0 1.1 9.2 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PriA_CRR PF18319.1 gi|352682120|ref|YP_004892644.1| - 0.041 13.9 0.2 0.041 13.9 0.2 1.9 2 0 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain Lar_restr_allev PF14354.6 gi|352682120|ref|YP_004892644.1| - 0.061 13.7 2.1 0.083 13.3 2.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|352682120|ref|YP_004892644.1| - 0.061 12.9 0.7 0.59 9.7 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|352682120|ref|YP_004892644.1| - 0.062 14.0 6.5 0.097 13.3 0.6 2.2 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_3 PF13878.6 gi|352682120|ref|YP_004892644.1| - 0.063 13.1 3.4 2.3 8.1 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Ribosomal_L37ae PF01780.19 gi|352682120|ref|YP_004892644.1| - 0.066 13.3 0.6 0.078 13.1 0.6 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-ACC PF17848.1 gi|352682120|ref|YP_004892644.1| - 0.075 13.1 1.6 4.9 7.3 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain ADK_lid PF05191.14 gi|352682120|ref|YP_004892644.1| - 0.094 12.7 6.6 1.5 8.9 6.7 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid YhfH PF14149.6 gi|352682120|ref|YP_004892644.1| - 0.1 12.6 2.8 5.7 7.0 0.1 2.3 1 1 1 2 2 2 0 YhfH-like protein A2L_zn_ribbon PF08792.10 gi|352682120|ref|YP_004892644.1| - 0.11 12.2 1.9 2.6 7.9 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|352682120|ref|YP_004892644.1| - 0.16 12.1 5.0 0.18 12.0 0.5 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_ribbon_recom PF13408.6 gi|352682120|ref|YP_004892644.1| - 0.22 12.0 5.2 0.57 10.7 5.3 1.6 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain HalOD2 PF18547.1 gi|352682120|ref|YP_004892644.1| - 0.67 9.9 4.2 2.4 8.1 1.0 2.1 1 1 1 2 2 2 0 Halobacterial output domain 2 Ribosomal_S24e PF01282.19 gi|352682121|ref|YP_004892645.1| - 1.6e-20 72.8 0.0 1.6e-20 72.8 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S24e PsiE PF06146.12 gi|352682122|ref|YP_004892646.1| - 4e-12 46.3 6.1 4e-12 46.3 6.1 1.6 2 0 0 2 2 2 1 Phosphate-starvation-inducible E Multi_Drug_Res PF00893.19 gi|352682122|ref|YP_004892646.1| - 2.9 8.6 10.1 1.3 9.7 0.6 2.6 1 1 1 2 2 2 0 Small Multidrug Resistance protein PMT_4TMC PF16192.5 gi|352682122|ref|YP_004892646.1| - 7.2 6.1 8.0 13 5.3 1.4 2.1 1 1 1 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase Methyltransf_11 PF08241.12 gi|352682123|ref|YP_004892647.1| - 1e-08 35.7 0.0 1.6e-08 35.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352682123|ref|YP_004892647.1| - 0.00079 20.1 0.0 0.0014 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CPBP PF02517.16 gi|352682124|ref|YP_004892648.1| - 1.5e-09 38.1 14.5 1.1e-08 35.3 14.5 2.2 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF1240 PF06836.12 gi|352682124|ref|YP_004892648.1| - 0.13 12.8 6.6 3.3 8.3 1.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1240) Fe_dep_repress PF01325.19 gi|352682125|ref|YP_004892649.1| - 1.4e-18 66.9 0.1 1.4e-18 66.9 0.1 1.6 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|352682125|ref|YP_004892649.1| - 7.1e-13 48.4 1.7 8.4e-11 41.8 1.1 2.3 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|352682125|ref|YP_004892649.1| - 1.7e-10 40.6 0.1 4.1e-10 39.4 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|352682125|ref|YP_004892649.1| - 6.3e-08 32.3 0.3 4.1e-06 26.5 0.1 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|352682125|ref|YP_004892649.1| - 7.9e-08 32.2 0.1 2.2e-07 30.7 0.0 1.9 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|352682125|ref|YP_004892649.1| - 9.1e-08 31.9 0.0 2.2e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|352682125|ref|YP_004892649.1| - 4.6e-07 29.3 1.0 6.5e-07 28.8 0.1 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|352682125|ref|YP_004892649.1| - 4e-05 24.0 0.1 8.5e-05 23.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|352682125|ref|YP_004892649.1| - 5.9e-05 22.9 0.1 0.00015 21.6 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|352682125|ref|YP_004892649.1| - 7.4e-05 22.6 0.1 0.00019 21.3 0.1 1.7 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|352682125|ref|YP_004892649.1| - 0.00011 22.5 0.3 0.00043 20.6 0.1 2.0 2 0 0 2 2 2 1 Transcriptional regulator DUF977 PF06163.11 gi|352682125|ref|YP_004892649.1| - 0.00019 21.4 0.0 0.00027 20.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_29 PF13551.6 gi|352682125|ref|YP_004892649.1| - 0.00035 20.5 0.1 0.00065 19.7 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|352682125|ref|YP_004892649.1| - 0.00055 19.5 0.1 0.0019 17.8 0.1 1.9 1 1 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 gi|352682125|ref|YP_004892649.1| - 0.00082 19.2 0.1 0.002 17.9 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|352682125|ref|YP_004892649.1| - 0.0023 18.0 0.0 0.0064 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|352682125|ref|YP_004892649.1| - 0.0025 17.8 0.0 0.0063 16.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Lant_dehydr_N PF04738.13 gi|352682125|ref|YP_004892649.1| - 0.0027 15.9 0.1 0.0031 15.7 0.1 1.0 1 0 0 1 1 1 1 Lantibiotic dehydratase, N terminus FeoC PF09012.10 gi|352682125|ref|YP_004892649.1| - 0.003 17.6 0.2 0.044 13.8 0.0 2.2 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_17 PF12728.7 gi|352682125|ref|YP_004892649.1| - 0.0032 17.6 0.0 0.007 16.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|352682125|ref|YP_004892649.1| - 0.0038 17.1 0.4 0.0093 15.9 0.1 1.8 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|352682125|ref|YP_004892649.1| - 0.0047 16.9 0.0 0.023 14.7 0.0 2.1 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_35 PF13693.6 gi|352682125|ref|YP_004892649.1| - 0.0049 16.9 0.1 2 8.5 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|352682125|ref|YP_004892649.1| - 0.0053 16.5 0.0 0.012 15.3 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Mrr_N PF14338.6 gi|352682125|ref|YP_004892649.1| - 0.0062 16.6 0.2 0.056 13.6 0.0 2.4 2 1 0 3 3 3 1 Mrr N-terminal domain HTH_5 PF01022.20 gi|352682125|ref|YP_004892649.1| - 0.0076 16.1 1.3 0.016 15.0 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|352682125|ref|YP_004892649.1| - 0.0085 15.9 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 TFIIE alpha subunit DUF4423 PF14394.6 gi|352682125|ref|YP_004892649.1| - 0.009 15.7 0.0 0.015 15.0 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_1 PF00126.27 gi|352682125|ref|YP_004892649.1| - 0.012 15.6 0.3 0.042 13.8 0.1 2.2 2 1 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_10 PF04967.12 gi|352682125|ref|YP_004892649.1| - 0.014 15.2 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_38 PF13936.6 gi|352682125|ref|YP_004892649.1| - 0.025 14.3 0.0 0.064 13.0 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HemN_C PF06969.16 gi|352682125|ref|YP_004892649.1| - 0.03 14.4 0.1 0.091 12.8 0.0 1.8 2 0 0 2 2 2 0 HemN C-terminal domain ANT PF03374.14 gi|352682125|ref|YP_004892649.1| - 0.05 13.9 0.0 0.083 13.2 0.0 1.4 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_36 PF13730.6 gi|352682125|ref|YP_004892649.1| - 0.059 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain EAP30 PF04157.16 gi|352682125|ref|YP_004892649.1| - 0.063 12.6 0.0 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family B-block_TFIIIC PF04182.12 gi|352682125|ref|YP_004892649.1| - 0.07 13.3 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC FtsK_gamma PF09397.10 gi|352682125|ref|YP_004892649.1| - 0.087 12.6 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Ftsk gamma domain Trans_coact PF16805.5 gi|352682125|ref|YP_004892649.1| - 0.088 12.9 0.5 0.34 11.0 0.3 1.9 2 0 0 2 2 2 0 Phage late-transcription coactivator HTH_DeoR PF08220.12 gi|352682125|ref|YP_004892649.1| - 0.091 12.5 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RuvB_C PF05491.13 gi|352682125|ref|YP_004892649.1| - 0.12 12.2 0.4 0.38 10.7 0.1 2.0 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_Tnp_ISL3 PF13542.6 gi|352682125|ref|YP_004892649.1| - 0.17 11.4 0.0 0.63 9.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Nramp PF01566.18 gi|352682126|ref|YP_004892650.1| - 7.6e-67 225.8 22.8 9.6e-67 225.5 22.8 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein ATP-grasp_2 PF08442.10 gi|352682127|ref|YP_004892651.1| - 3.6e-64 216.1 1.9 3.6e-64 216.1 1.9 1.5 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|352682127|ref|YP_004892651.1| - 2.5e-16 59.9 1.7 9.2e-16 58.0 0.2 2.3 3 0 0 3 3 3 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|352682127|ref|YP_004892651.1| - 4.1e-13 49.3 1.7 5.4e-12 45.6 1.7 2.3 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|352682127|ref|YP_004892651.1| - 2.2e-08 33.9 0.9 4.5e-08 32.8 0.3 1.8 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|352682127|ref|YP_004892651.1| - 2.7e-05 24.0 1.4 5.6e-05 23.0 0.2 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|352682127|ref|YP_004892651.1| - 4.7e-05 23.0 0.1 9.6e-05 22.0 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain Linocin_M18 PF04454.12 gi|352682127|ref|YP_004892651.1| - 0.018 14.3 0.0 0.036 13.4 0.0 1.4 1 0 0 1 1 1 0 Encapsulating protein for peroxidase RimK PF08443.11 gi|352682127|ref|YP_004892651.1| - 0.024 14.2 0.1 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 RimK-like ATP-grasp domain CoA_binding PF02629.19 gi|352682128|ref|YP_004892652.1| - 4.3e-31 107.5 6.9 8.3e-31 106.5 3.5 2.5 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.19 gi|352682128|ref|YP_004892652.1| - 4.5e-12 46.1 0.3 1.1e-11 44.8 0.2 1.7 2 0 0 2 2 2 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|352682128|ref|YP_004892652.1| - 6.4e-12 45.5 0.1 4.2e-11 42.8 0.0 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|352682128|ref|YP_004892652.1| - 9e-09 35.8 0.1 3.1e-08 34.1 0.1 1.8 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|352682128|ref|YP_004892652.1| - 0.0049 17.7 0.3 0.035 14.9 0.2 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Peripla_BP_4 PF13407.6 gi|352682128|ref|YP_004892652.1| - 0.039 13.5 3.5 0.69 9.4 1.4 3.0 1 1 0 2 2 2 0 Periplasmic binding protein domain SHOCT PF09851.9 gi|352682128|ref|YP_004892652.1| - 0.19 11.5 0.3 0.43 10.4 0.3 1.6 1 0 0 1 1 1 0 Short C-terminal domain zf-B_box PF00643.24 gi|352682129|ref|YP_004892653.1| - 0.00013 22.0 29.1 0.015 15.4 2.1 3.9 3 1 1 4 4 4 3 B-box zinc finger zf-HIT PF04438.16 gi|352682129|ref|YP_004892653.1| - 0.01 15.7 6.6 0.01 15.7 6.6 4.0 1 1 0 2 2 2 0 HIT zinc finger TerY_C PF15616.6 gi|352682129|ref|YP_004892653.1| - 0.021 14.9 19.1 0.12 12.5 3.9 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain zf-C2HC5 PF06221.13 gi|352682129|ref|YP_004892653.1| - 0.3 11.1 22.9 0.23 11.5 5.0 2.9 1 1 0 2 2 2 0 Putative zinc finger motif, C2HC5-type FYVE PF01363.21 gi|352682129|ref|YP_004892653.1| - 0.62 10.2 32.4 0.33 11.1 12.2 4.3 1 1 2 3 3 3 0 FYVE zinc finger zf-C3HC4_3 PF13920.6 gi|352682129|ref|YP_004892653.1| - 1.3 8.9 28.1 0.43 10.5 11.4 3.4 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF3795 PF12675.7 gi|352682129|ref|YP_004892653.1| - 1.3 9.5 24.5 0.51 10.8 11.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3795) zf-MYND PF01753.18 gi|352682129|ref|YP_004892653.1| - 2.6 8.2 19.3 0.67 10.1 4.9 3.5 2 2 0 2 2 2 0 MYND finger zf-piccolo PF05715.13 gi|352682129|ref|YP_004892653.1| - 6 7.1 27.2 0.87 9.8 2.2 4.3 2 1 3 5 5 5 0 Piccolo Zn-finger Prok-RING_4 PF14447.6 gi|352682129|ref|YP_004892653.1| - 9 6.3 23.4 3.5 7.6 5.0 3.7 1 1 4 5 5 5 0 Prokaryotic RING finger family 4 Aminotran_1_2 PF00155.21 gi|352682130|ref|YP_004892654.1| - 2.7e-42 145.3 0.0 2.9e-42 145.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|352682130|ref|YP_004892654.1| - 1e-10 41.0 0.0 6.1e-10 38.5 0.0 1.9 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase PALP PF00291.25 gi|352682131|ref|YP_004892655.1| - 4.7e-86 288.9 1.9 6.7e-86 288.3 1.9 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|352682131|ref|YP_004892655.1| - 6.5e-11 41.8 0.1 2.8e-10 39.8 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|352682131|ref|YP_004892655.1| - 0.0023 17.9 0.0 0.0066 16.4 0.0 1.8 1 1 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|352682131|ref|YP_004892655.1| - 0.0064 16.3 0.4 2.7 7.9 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT_4 PF13291.6 gi|352682131|ref|YP_004892655.1| - 0.094 13.3 0.0 0.22 12.1 0.0 1.6 1 0 0 1 1 1 0 ACT domain tRNA_SAD PF07973.14 gi|352682132|ref|YP_004892656.1| - 1.9e-11 43.8 0.2 4.1e-11 42.8 0.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|352682132|ref|YP_004892656.1| - 8.6e-10 37.7 0.4 1.2e-09 37.2 0.4 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) DAO PF01266.24 gi|352682133|ref|YP_004892657.1| - 5.5e-52 177.5 0.5 6.3e-52 177.3 0.5 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|352682133|ref|YP_004892657.1| - 7.2e-05 22.2 0.2 0.0017 17.6 0.2 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|352682133|ref|YP_004892657.1| - 0.00019 21.6 0.5 0.00044 20.4 0.5 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|352682133|ref|YP_004892657.1| - 0.00098 18.4 0.1 0.0017 17.7 0.1 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|352682133|ref|YP_004892657.1| - 0.00099 19.1 0.1 0.2 11.6 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|352682133|ref|YP_004892657.1| - 0.042 14.4 0.1 0.13 12.9 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|352682133|ref|YP_004892657.1| - 0.05 12.7 0.1 0.91 8.5 0.2 2.1 2 0 0 2 2 2 0 FAD binding domain Mqo PF06039.15 gi|352682133|ref|YP_004892657.1| - 0.063 11.8 0.1 0.089 11.3 0.1 1.2 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) Pyr_redox_3 PF13738.6 gi|352682133|ref|YP_004892657.1| - 0.16 11.2 1.6 3.4 6.8 0.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FUR PF01475.19 gi|352682134|ref|YP_004892658.1| - 6.5e-22 77.9 0.0 7.8e-22 77.7 0.0 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family PadR PF03551.14 gi|352682134|ref|YP_004892658.1| - 0.00046 20.1 0.0 0.0015 18.4 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|352682134|ref|YP_004892658.1| - 0.00053 20.3 0.0 0.00069 20.0 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|352682134|ref|YP_004892658.1| - 0.0042 16.9 0.0 0.0076 16.1 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|352682134|ref|YP_004892658.1| - 0.017 15.0 0.0 0.051 13.4 0.0 1.7 1 1 0 2 2 2 0 HxlR-like helix-turn-helix LexA_DNA_bind PF01726.16 gi|352682134|ref|YP_004892658.1| - 0.03 14.1 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_5 PF01022.20 gi|352682134|ref|YP_004892658.1| - 0.047 13.6 0.0 0.16 11.8 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Tnp_Tc3_2 PF01498.18 gi|352682134|ref|YP_004892658.1| - 0.096 12.9 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Transposase RELT PF12606.8 gi|352682134|ref|YP_004892658.1| - 0.11 11.6 0.0 0.2 10.6 0.0 1.4 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 DUF2513 PF10711.9 gi|352682134|ref|YP_004892658.1| - 0.13 12.5 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_20 PF12840.7 gi|352682134|ref|YP_004892658.1| - 0.19 11.8 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Lant_dehydr_N PF04738.13 gi|352682134|ref|YP_004892658.1| - 0.27 9.3 0.0 0.33 9.0 0.0 1.0 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus Adenosine_kin PF04008.14 gi|352682135|ref|YP_004892659.1| - 6.9e-73 243.5 0.1 7.8e-73 243.4 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DEAD PF00270.29 gi|352682136|ref|YP_004892660.1| - 2.7e-26 92.4 0.0 7.3e-26 91.0 0.0 1.7 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|352682136|ref|YP_004892660.1| - 4.2e-19 68.9 0.0 3e-16 59.7 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|352682136|ref|YP_004892660.1| - 3.5e-13 50.1 0.1 1.5e-12 48.1 0.1 2.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|352682136|ref|YP_004892660.1| - 0.0015 18.6 0.0 0.0029 17.6 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HemN_C PF06969.16 gi|352682136|ref|YP_004892660.1| - 0.013 15.6 0.0 0.043 13.9 0.0 1.9 2 0 0 2 2 2 0 HemN C-terminal domain HTH_45 PF14947.6 gi|352682136|ref|YP_004892660.1| - 0.087 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix GCS2 PF04107.13 gi|352682136|ref|YP_004892660.1| - 0.14 11.4 0.0 0.38 10.0 0.0 1.7 1 0 0 1 1 1 0 Glutamate-cysteine ligase family 2(GCS2) SecA_DEAD PF07517.14 gi|352682136|ref|YP_004892660.1| - 0.15 11.4 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 SecA DEAD-like domain Kazal_2 PF07648.15 gi|352682136|ref|YP_004892660.1| - 0.33 11.1 3.3 0.6 10.3 3.3 1.4 1 0 0 1 1 1 0 Kazal-type serine protease inhibitor domain tRNA-synt_1 PF00133.22 gi|352682137|ref|YP_004892661.1| - 2.2e-104 349.9 0.0 3.4e-103 346.0 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|352682137|ref|YP_004892661.1| - 8.1e-30 103.8 0.1 1.5e-29 102.9 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|352682137|ref|YP_004892661.1| - 1.7e-25 89.6 0.0 4.1e-16 58.7 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) HscB_4_cys PF18256.1 gi|352682137|ref|YP_004892661.1| - 0.0007 19.4 0.6 0.11 12.3 0.0 2.4 2 0 0 2 2 2 2 Co-chaperone HscB tetracysteine metal binding motif tRNA-synt_1_2 PF13603.6 gi|352682137|ref|YP_004892661.1| - 0.00093 18.8 0.1 0.058 12.9 0.0 2.4 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|352682137|ref|YP_004892661.1| - 0.055 12.4 0.0 2.6 6.9 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) Arnt_C PF18583.1 gi|352682137|ref|YP_004892661.1| - 0.071 12.7 0.2 0.27 10.9 0.1 2.0 2 0 0 2 2 2 0 Aminoarabinose transferase C-terminal domain ACT PF01842.25 gi|352682138|ref|YP_004892662.1| - 2.4e-08 33.6 0.0 6e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|352682138|ref|YP_004892662.1| - 6.7e-05 23.4 0.6 0.00029 21.4 0.0 2.2 2 1 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|352682138|ref|YP_004892662.1| - 0.00086 19.2 0.0 0.0021 18.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|352682138|ref|YP_004892662.1| - 0.017 14.9 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 ACT domain ATP_bind_3 PF01171.20 gi|352682139|ref|YP_004892663.1| - 4.1e-11 43.0 0.0 9.1e-11 41.8 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|352682139|ref|YP_004892663.1| - 0.00036 20.6 0.1 0.019 15.0 0.1 2.2 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|352682139|ref|YP_004892663.1| - 0.0014 18.1 1.9 0.0014 18.1 1.9 2.4 3 0 0 3 3 3 1 Zinc-ribbon RecR PF02132.15 gi|352682139|ref|YP_004892663.1| - 0.074 12.6 0.2 0.074 12.6 0.2 2.3 3 0 0 3 3 3 0 RecR protein DZR PF12773.7 gi|352682139|ref|YP_004892663.1| - 0.45 10.6 5.3 8.3 6.5 0.5 2.4 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|352682140|ref|YP_004892664.1| - 0.0016 18.4 0.5 0.0071 16.2 0.1 1.9 1 1 1 2 2 2 1 zinc-ribbon domain DUF35_N PF12172.8 gi|352682140|ref|YP_004892664.1| - 0.0044 16.9 0.0 0.0063 16.4 0.0 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-FCS PF06467.14 gi|352682140|ref|YP_004892664.1| - 0.026 14.5 0.1 0.033 14.1 0.1 1.1 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zinc_ribbon_5 PF13719.6 gi|352682140|ref|YP_004892664.1| - 0.04 13.7 0.4 0.047 13.4 0.4 1.4 1 1 0 1 1 1 0 zinc-ribbon domain Thy1 PF02511.15 gi|352682141|ref|YP_004892665.1| - 2.1e-43 148.3 0.5 2.5e-43 148.1 0.5 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Nucleolin_bd PF16725.5 gi|352682141|ref|YP_004892665.1| - 1.1 9.0 3.6 48 3.7 0.0 3.1 2 1 1 3 3 3 0 Nucleolin binding domain Ribosomal_L15e PF00827.17 gi|352682143|ref|YP_004892667.1| - 2.5e-56 190.4 11.4 3e-56 190.2 11.4 1.1 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|352682144|ref|YP_004892668.1| - 1.9e-17 63.6 0.0 1.4e-14 54.4 0.0 2.0 1 1 0 1 1 1 1 RNA binding DUF1424 PF07232.11 gi|352682144|ref|YP_004892668.1| - 0.092 11.7 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative rep protein (DUF1424) RNase_P_p30 PF01876.16 gi|352682145|ref|YP_004892669.1| - 0.0022 17.5 0.0 0.0046 16.5 0.0 1.6 1 1 0 1 1 1 1 RNase P subunit p30 MreD PF04093.12 gi|352682146|ref|YP_004892670.1| - 0.022 14.9 0.2 0.026 14.6 0.2 1.2 1 0 0 1 1 1 0 rod shape-determining protein MreD RNase_P_Rpp14 PF01900.19 gi|352682146|ref|YP_004892670.1| - 0.067 13.4 0.5 0.087 13.1 0.2 1.5 1 1 0 1 1 1 0 Rpp14/Pop5 family TMC PF07810.13 gi|352682146|ref|YP_004892670.1| - 0.12 12.9 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 TMC domain RimK PF08443.11 gi|352682147|ref|YP_004892671.1| - 1.9e-29 102.7 0.0 2.3e-29 102.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|352682147|ref|YP_004892671.1| - 1.1e-15 57.5 0.0 1.6e-15 56.9 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|352682147|ref|YP_004892671.1| - 2.2e-10 40.8 0.0 4e-10 40.0 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|352682147|ref|YP_004892671.1| - 2.5e-05 23.7 0.0 0.011 15.0 0.0 2.1 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|352682147|ref|YP_004892671.1| - 0.00022 20.5 0.0 0.012 14.9 0.0 2.1 1 1 0 2 2 2 2 YheC/D like ATP-grasp DUF5514 PF17633.2 gi|352682148|ref|YP_004892672.1| - 0.17 12.1 0.0 0.26 11.5 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5514) ABC_tran PF00005.27 gi|352682149|ref|YP_004892673.1| - 9.6e-23 81.2 0.0 1.3e-22 80.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352682149|ref|YP_004892673.1| - 9.3e-11 42.1 0.4 0.00038 20.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352682149|ref|YP_004892673.1| - 6.3e-06 25.8 0.0 0.00014 21.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|352682149|ref|YP_004892673.1| - 0.00012 21.8 0.1 0.00023 20.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|352682149|ref|YP_004892673.1| - 0.0011 19.1 0.0 0.002 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|352682149|ref|YP_004892673.1| - 0.0012 19.4 0.0 0.0016 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|352682149|ref|YP_004892673.1| - 0.002 18.1 0.1 0.003 17.5 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|352682149|ref|YP_004892673.1| - 0.0065 16.4 0.0 0.009 15.9 0.0 1.1 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|352682149|ref|YP_004892673.1| - 0.013 16.1 0.0 0.053 14.1 0.0 1.9 2 1 0 2 2 2 0 AAA domain MutS_V PF00488.21 gi|352682149|ref|YP_004892673.1| - 0.015 15.4 0.1 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_16 PF13191.6 gi|352682149|ref|YP_004892673.1| - 0.025 15.0 0.0 0.032 14.6 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|352682149|ref|YP_004892673.1| - 0.036 14.4 0.0 0.082 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|352682149|ref|YP_004892673.1| - 0.036 13.2 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|352682149|ref|YP_004892673.1| - 0.058 13.3 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Cytidylate_kin PF02224.18 gi|352682149|ref|YP_004892673.1| - 0.08 12.7 0.0 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 Cytidylate kinase MMR_HSR1 PF01926.23 gi|352682149|ref|YP_004892673.1| - 0.09 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.6 gi|352682149|ref|YP_004892673.1| - 0.12 12.7 0.0 0.32 11.4 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA PF00004.29 gi|352682149|ref|YP_004892673.1| - 0.15 12.5 0.0 0.42 11.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|352682149|ref|YP_004892673.1| - 0.15 11.7 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|352682149|ref|YP_004892673.1| - 0.16 12.2 0.0 0.26 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|352682149|ref|YP_004892673.1| - 0.18 11.5 0.0 0.44 10.2 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.6 gi|352682149|ref|YP_004892673.1| - 0.23 10.1 0.0 4.3 5.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain UPF0051 PF01458.17 gi|352682150|ref|YP_004892674.1| - 4.2e-63 213.0 0.5 5.4e-63 212.6 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) Aminotran_3 PF00202.21 gi|352682151|ref|YP_004892675.1| - 2.3e-121 405.3 0.0 2.8e-121 405.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|352682151|ref|YP_004892675.1| - 0.11 11.6 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II Lactamase_B_6 PF16661.5 gi|352682156|ref|YP_004892680.1| - 2.7e-15 56.3 0.0 3.9e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Beta-Casp PF10996.8 gi|352682156|ref|YP_004892680.1| - 2.3e-14 53.6 0.0 6e-14 52.3 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|352682156|ref|YP_004892680.1| - 1.5e-12 47.3 0.0 3.2e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|352682156|ref|YP_004892680.1| - 3.3e-11 43.6 0.9 3.4e-10 40.3 0.9 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|352682156|ref|YP_004892680.1| - 1.9e-09 37.3 0.1 4.4e-09 36.1 0.0 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|352682156|ref|YP_004892680.1| - 0.086 12.7 0.0 0.36 10.7 0.0 1.9 2 1 0 2 2 2 0 Beta-lactamase superfamily domain Ribosomal_L26 PF16906.5 gi|352682157|ref|YP_004892681.1| - 1e-29 102.8 0.6 1.3e-29 102.5 0.6 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|352682157|ref|YP_004892681.1| - 2.8e-08 33.4 7.4 2.8e-08 33.4 7.4 1.7 2 0 0 2 2 2 1 KOW motif tRNA-synt_2 PF00152.20 gi|352682159|ref|YP_004892683.1| - 1.2e-84 284.1 0.0 1.4e-84 283.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|352682159|ref|YP_004892683.1| - 8.4e-12 44.9 0.0 1.5e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|352682159|ref|YP_004892683.1| - 0.002 17.7 0.2 0.32 10.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Usp PF00582.26 gi|352682160|ref|YP_004892684.1| - 3.8e-32 111.7 0.3 4.6e-32 111.5 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family GARS_N PF02844.15 gi|352682160|ref|YP_004892684.1| - 0.028 15.2 0.0 0.075 13.8 0.0 1.6 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain DNA_photolyase PF00875.18 gi|352682160|ref|YP_004892684.1| - 0.049 13.6 0.0 0.069 13.2 0.0 1.3 1 1 0 1 1 1 0 DNA photolyase RQC PF09382.10 gi|352682160|ref|YP_004892684.1| - 0.067 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 RQC domain Pyr_redox PF00070.27 gi|352682160|ref|YP_004892684.1| - 0.079 13.5 0.0 0.15 12.7 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NUDIX PF00293.28 gi|352682162|ref|YP_004892686.1| - 1.6e-21 76.7 0.0 1.8e-21 76.5 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|352682162|ref|YP_004892686.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.5 1 1 0 1 1 1 0 NUDIX domain DUF4916 PF16262.5 gi|352682162|ref|YP_004892686.1| - 0.15 11.5 0.0 1 8.8 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4916) PCMT PF01135.19 gi|352682163|ref|YP_004892687.1| - 1.5e-62 211.1 0.0 1.9e-62 210.8 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|352682163|ref|YP_004892687.1| - 6.9e-08 32.4 0.0 8.7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352682163|ref|YP_004892687.1| - 5.7e-05 23.7 0.0 9.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|352682163|ref|YP_004892687.1| - 0.00014 21.1 0.0 0.00016 20.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.10 gi|352682163|ref|YP_004892687.1| - 0.00024 20.8 0.0 0.00031 20.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.18 gi|352682163|ref|YP_004892687.1| - 0.0006 19.2 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|352682163|ref|YP_004892687.1| - 0.00075 19.1 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|352682163|ref|YP_004892687.1| - 0.0011 20.0 0.0 0.0016 19.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|352682163|ref|YP_004892687.1| - 0.0025 17.5 0.0 0.0038 16.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_11 PF08241.12 gi|352682163|ref|YP_004892687.1| - 0.004 17.8 0.0 0.0093 16.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|352682163|ref|YP_004892687.1| - 0.0042 16.9 0.0 0.01 15.6 0.0 1.6 2 0 0 2 2 2 1 Met-10+ like-protein Fibrillarin PF01269.17 gi|352682163|ref|YP_004892687.1| - 0.0084 15.2 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_18 PF12847.7 gi|352682163|ref|YP_004892687.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352682163|ref|YP_004892687.1| - 0.023 15.5 0.0 0.035 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|352682163|ref|YP_004892687.1| - 0.062 12.6 0.0 0.084 12.1 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|352682163|ref|YP_004892687.1| - 0.23 11.5 0.0 0.33 10.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CbiA PF01656.23 gi|352682166|ref|YP_004892690.1| - 1.1e-06 28.7 0.0 1.9e-06 28.0 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|352682166|ref|YP_004892690.1| - 0.0002 21.3 0.0 0.00073 19.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|352682166|ref|YP_004892690.1| - 0.0034 16.9 0.1 0.0047 16.4 0.1 1.5 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|352682166|ref|YP_004892690.1| - 0.018 14.5 0.0 0.027 14.0 0.0 1.3 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|352682166|ref|YP_004892690.1| - 0.028 13.6 0.1 0.15 11.2 0.0 2.0 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_24 PF13479.6 gi|352682166|ref|YP_004892690.1| - 0.03 14.1 0.1 0.24 11.1 0.1 2.1 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|352682167|ref|YP_004892691.1| - 3.4e-13 49.3 0.1 5.5e-13 48.6 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_28 PF13521.6 gi|352682167|ref|YP_004892691.1| - 0.006 16.8 0.0 0.014 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352682167|ref|YP_004892691.1| - 0.068 13.5 0.3 0.22 11.9 0.3 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|352682167|ref|YP_004892691.1| - 0.24 11.1 1.1 0.8 9.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain HTH_29 PF13551.6 gi|352682168|ref|YP_004892692.1| - 0.062 13.3 0.2 0.74 9.9 0.1 2.5 2 1 0 2 2 2 0 Winged helix-turn helix HTH_24 PF13412.6 gi|352682168|ref|YP_004892692.1| - 0.12 11.9 2.1 0.53 9.9 0.1 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF2070 PF09843.9 gi|352682169|ref|YP_004892693.1| - 0.76 8.0 20.0 0.027 12.8 5.5 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) DUF4330 PF14221.6 gi|352682171|ref|YP_004892695.1| - 0.0018 18.5 0.1 0.0032 17.7 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4330) DUF4148 PF13663.6 gi|352682171|ref|YP_004892695.1| - 0.0023 18.1 5.7 0.004 17.3 5.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4148) Pilin_N PF07790.11 gi|352682171|ref|YP_004892695.1| - 0.0033 18.3 1.5 0.0057 17.5 1.5 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Arch_flagellin PF01917.16 gi|352682171|ref|YP_004892695.1| - 0.96 9.6 6.4 1.3 9.2 6.4 1.3 1 1 0 1 1 1 0 Archaebacterial flagellin DUF3767 PF12597.8 gi|352682173|ref|YP_004892697.1| - 0.024 14.5 0.4 0.034 14.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) TDH PF03347.13 gi|352682175|ref|YP_004892699.1| - 0.032 13.8 0.7 0.065 12.8 0.7 1.5 1 0 0 1 1 1 0 Vibrio thermostable direct hemolysin UCR_Fe-S_N PF10399.9 gi|352682177|ref|YP_004892701.1| - 1.1 8.7 3.6 2.5 7.5 3.6 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal UPRTase PF14681.6 gi|352682178|ref|YP_004892702.1| - 1.9e-50 171.2 0.0 2.2e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|352682178|ref|YP_004892702.1| - 8e-10 38.5 1.6 1.2e-09 37.9 1.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain DUF3646 PF12362.8 gi|352682178|ref|YP_004892702.1| - 0.13 12.6 0.2 0.86 9.9 0.1 2.3 3 0 0 3 3 3 0 DNA polymerase III gamma and tau subunits C terminal Peptidase_M50 PF02163.22 gi|352682179|ref|YP_004892703.1| - 3.4e-10 39.6 5.4 1.3e-06 27.9 0.4 3.1 2 1 1 3 3 3 3 Peptidase family M50 Peptidase_M1 PF01433.20 gi|352682180|ref|YP_004892704.1| - 9e-49 166.0 1.0 1.4e-48 165.4 1.0 1.3 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|352682180|ref|YP_004892704.1| - 2.4e-39 133.6 25.0 2.7e-14 53.3 0.2 4.5 2 2 3 5 5 5 5 HEAT repeats Peptidase_M1_N PF17900.1 gi|352682180|ref|YP_004892704.1| - 1.8e-19 70.7 0.0 3.8e-19 69.6 0.0 1.6 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|352682180|ref|YP_004892704.1| - 2.8e-12 46.0 22.1 0.00015 22.1 0.3 6.8 6 0 0 6 6 6 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|352682180|ref|YP_004892704.1| - 1.7e-10 40.2 1.0 3.1 8.3 0.1 7.1 7 0 0 7 7 7 3 HEAT repeat Vitellogenin_N PF01347.22 gi|352682180|ref|YP_004892704.1| - 6.8e-05 21.5 0.2 0.007 14.8 0.0 2.2 1 1 0 2 2 2 2 Lipoprotein amino terminal region Cnd1 PF12717.7 gi|352682180|ref|YP_004892704.1| - 0.0041 17.2 0.1 2.1 8.4 0.0 3.8 3 2 2 5 5 5 1 non-SMC mitotic condensation complex subunit 1 GlutR_dimer PF00745.20 gi|352682180|ref|YP_004892704.1| - 0.081 13.4 3.3 0.32 11.5 1.9 2.8 3 0 0 3 3 3 0 Glutamyl-tRNAGlu reductase, dimerisation domain ERAP1_C PF11838.8 gi|352682180|ref|YP_004892704.1| - 0.087 12.4 1.0 0.33 10.5 0.3 2.0 1 1 1 2 2 2 0 ERAP1-like C-terminal domain TSC22 PF01166.18 gi|352682180|ref|YP_004892704.1| - 2.2 8.6 4.7 2 8.8 2.4 2.2 2 0 0 2 2 2 0 TSC-22/dip/bun family PhoH PF02562.16 gi|352682181|ref|YP_004892705.1| - 1.2e-52 178.4 0.0 1.5e-52 178.1 0.0 1.1 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|352682181|ref|YP_004892705.1| - 2.2e-07 30.6 0.0 5.2e-06 26.2 0.0 2.5 1 1 1 2 2 2 1 KH domain KH_5 PF13184.6 gi|352682181|ref|YP_004892705.1| - 3.2e-05 23.9 0.0 0.0046 17.0 0.0 2.7 2 0 0 2 2 2 1 NusA-like KH domain IstB_IS21 PF01695.17 gi|352682181|ref|YP_004892705.1| - 0.001 18.9 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|352682181|ref|YP_004892705.1| - 0.0014 18.4 0.0 0.0057 16.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain KH_1 PF00013.29 gi|352682181|ref|YP_004892705.1| - 0.0094 15.8 0.0 0.033 14.0 0.0 1.9 2 0 0 2 2 2 1 KH domain AAA_22 PF13401.6 gi|352682181|ref|YP_004892705.1| - 0.014 15.6 0.1 0.036 14.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|352682181|ref|YP_004892705.1| - 0.014 15.9 0.0 0.023 15.2 0.0 1.4 1 0 0 1 1 1 0 ABC transporter ATPase_2 PF01637.18 gi|352682181|ref|YP_004892705.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|352682181|ref|YP_004892705.1| - 0.14 12.6 0.4 0.82 10.0 0.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.15 gi|352682181|ref|YP_004892705.1| - 0.23 11.4 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Acylphosphatase PF00708.18 gi|352682182|ref|YP_004892706.1| - 7.3e-14 51.9 0.0 7.9e-14 51.8 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase CysG_dimeriser PF10414.9 gi|352682182|ref|YP_004892706.1| - 0.0093 15.7 1.8 0.013 15.2 1.8 1.3 1 0 0 1 1 1 1 Sirohaem synthase dimerisation region BLUF PF04940.12 gi|352682182|ref|YP_004892706.1| - 0.044 13.9 0.0 0.048 13.8 0.0 1.1 1 0 0 1 1 1 0 Sensors of blue-light using FAD Peptidase_A24 PF01478.18 gi|352682183|ref|YP_004892707.1| - 0.016 15.6 7.0 0.016 15.6 7.0 1.7 2 0 0 2 2 2 0 Type IV leader peptidase family bact-PGI_C PF10432.9 gi|352682184|ref|YP_004892708.1| - 5.4e-16 59.0 0.1 2.8e-15 56.7 0.1 2.0 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|352682184|ref|YP_004892708.1| - 6.4e-07 29.3 0.2 2.6e-06 27.3 0.2 1.9 1 1 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|352682184|ref|YP_004892708.1| - 0.00034 20.6 0.6 0.0011 19.0 0.0 1.9 2 0 0 2 2 2 1 SIS domain ResIII PF04851.15 gi|352682185|ref|YP_004892709.1| - 2.7e-15 56.8 0.0 7.1e-15 55.4 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|352682185|ref|YP_004892709.1| - 5.6e-15 55.7 0.8 1.2e-14 54.5 0.8 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|352682185|ref|YP_004892709.1| - 1.5e-13 50.6 0.1 2.4e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|352682185|ref|YP_004892709.1| - 2.2e-08 34.1 0.0 1.3e-07 31.6 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|352682185|ref|YP_004892709.1| - 1.3e-06 27.3 0.0 6.7e-06 25.0 0.0 1.9 1 1 0 1 1 1 1 SNF2 family N-terminal domain SIS_2 PF13580.6 gi|352682185|ref|YP_004892709.1| - 0.1 12.6 3.4 1.4 8.9 3.4 2.6 1 1 0 1 1 1 0 SIS domain Helicase_C_2 PF13307.6 gi|352682185|ref|YP_004892709.1| - 0.27 11.4 2.7 0.43 10.7 0.0 2.3 2 0 0 2 2 2 0 Helicase C-terminal domain Col_cuticle_N PF01484.17 gi|352682186|ref|YP_004892710.1| - 0.1 12.7 0.5 0.15 12.2 0.5 1.4 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain FeoB_associated PF12669.7 gi|352682186|ref|YP_004892710.1| - 0.39 11.1 2.7 0.52 10.8 2.7 1.2 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein DUF5412 PF17428.2 gi|352682187|ref|YP_004892711.1| - 0.12 12.3 5.7 0.14 12.0 5.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5412) Fer4_7 PF12838.7 gi|352682188|ref|YP_004892712.1| - 3.7e-13 49.8 19.8 1.4e-07 31.9 10.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352682188|ref|YP_004892712.1| - 4e-11 42.9 5.0 6.2e-11 42.3 5.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352682188|ref|YP_004892712.1| - 8.3e-10 38.1 17.7 1.9e-09 36.9 3.2 2.6 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352682188|ref|YP_004892712.1| - 1.3e-09 37.8 14.1 2.4e-09 36.8 2.8 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352682188|ref|YP_004892712.1| - 4.3e-09 36.4 9.1 5.6e-09 36.0 9.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352682188|ref|YP_004892712.1| - 2.1e-08 34.9 7.1 0.00012 23.0 1.6 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|352682188|ref|YP_004892712.1| - 4.4e-08 33.2 20.6 4.3e-05 23.6 11.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352682188|ref|YP_004892712.1| - 7.8e-07 28.8 10.6 1.6e-06 27.9 2.8 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|352682188|ref|YP_004892712.1| - 2.4e-05 25.0 2.4 2.4e-05 25.0 2.4 2.4 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|352682188|ref|YP_004892712.1| - 3.3e-05 24.0 11.1 0.00012 22.3 1.0 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|352682188|ref|YP_004892712.1| - 0.0012 19.6 17.2 0.01 16.7 5.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|352682188|ref|YP_004892712.1| - 0.0018 18.8 8.5 0.086 13.4 2.4 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|352682188|ref|YP_004892712.1| - 0.0022 18.5 3.4 0.0022 18.5 3.4 2.4 1 1 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|352682188|ref|YP_004892712.1| - 0.0033 17.8 10.4 0.96 9.9 10.4 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|352682188|ref|YP_004892712.1| - 0.017 15.9 3.3 0.2 12.5 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain DnaB_2 PF07261.11 gi|352682188|ref|YP_004892712.1| - 0.08 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Replication initiation and membrane attachment Fer4_18 PF13746.6 gi|352682188|ref|YP_004892712.1| - 0.45 10.7 10.3 2.9 8.1 8.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain SIR2 PF02146.17 gi|352682189|ref|YP_004892713.1| - 5.6e-51 173.0 0.0 6.7e-51 172.7 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|352682189|ref|YP_004892713.1| - 0.00014 21.6 0.0 0.0029 17.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Zn-ribbon_8 PF09723.10 gi|352682189|ref|YP_004892713.1| - 0.098 12.8 0.2 0.2 11.8 0.2 1.4 1 0 0 1 1 1 0 Zinc ribbon domain SIS PF01380.22 gi|352682189|ref|YP_004892713.1| - 0.17 11.8 0.0 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 SIS domain Zn_ribbon_SprT PF17283.2 gi|352682189|ref|YP_004892713.1| - 0.19 11.7 2.3 1.5 8.8 2.3 2.1 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF35_N PF12172.8 gi|352682189|ref|YP_004892713.1| - 0.23 11.4 3.3 0.74 9.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ntox1 PF15500.6 gi|352682190|ref|YP_004892714.1| - 0.017 15.4 0.1 0.03 14.7 0.1 1.3 1 0 0 1 1 1 0 Putative RNase-like toxin, toxin_1 DUF309 PF03745.14 gi|352682191|ref|YP_004892715.1| - 1.5e-13 50.2 0.6 2.5e-13 49.5 0.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Smoothelin PF12510.8 gi|352682192|ref|YP_004892716.1| - 0.29 11.2 3.9 1.2 9.2 2.1 2.3 2 0 0 2 2 2 0 Smoothelin cytoskeleton protein DisA-linker PF10635.9 gi|352682193|ref|YP_004892717.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 DisA bacterial checkpoint controller linker region PAPS_reduct PF01507.19 gi|352682195|ref|YP_004892719.1| - 2.4e-43 148.2 0.0 3.9e-43 147.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4 PF00037.27 gi|352682195|ref|YP_004892719.1| - 4.6e-07 29.4 8.9 2e-05 24.2 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352682195|ref|YP_004892719.1| - 7.8e-07 29.1 7.5 2.4e-06 27.6 7.6 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682195|ref|YP_004892719.1| - 4e-06 27.3 7.7 1e-05 26.0 7.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352682195|ref|YP_004892719.1| - 8e-06 25.7 10.9 0.00023 21.1 1.0 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352682195|ref|YP_004892719.1| - 3.5e-05 23.8 21.4 0.0011 19.0 12.1 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352682195|ref|YP_004892719.1| - 7.9e-05 22.5 1.5 7.9e-05 22.5 1.5 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352682195|ref|YP_004892719.1| - 0.00012 22.2 7.9 0.00012 22.2 7.9 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352682195|ref|YP_004892719.1| - 0.00033 21.5 9.8 0.0069 17.3 0.4 2.9 2 1 2 4 4 4 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|352682195|ref|YP_004892719.1| - 0.0093 16.5 0.6 0.0093 16.5 0.6 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|352682195|ref|YP_004892719.1| - 0.012 16.1 5.8 0.44 11.1 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352682195|ref|YP_004892719.1| - 0.013 16.0 7.0 0.12 12.8 1.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|352682195|ref|YP_004892719.1| - 0.068 14.1 13.7 0.38 11.8 2.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain QueC PF06508.13 gi|352682195|ref|YP_004892719.1| - 0.21 11.0 0.2 5.9 6.3 0.0 2.7 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC Fer4_18 PF13746.6 gi|352682195|ref|YP_004892719.1| - 0.99 9.6 4.8 2.1 8.6 4.4 1.7 2 0 0 2 2 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352682195|ref|YP_004892719.1| - 1.1 9.9 11.4 1.3 9.7 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|352682195|ref|YP_004892719.1| - 2.9 8.7 7.1 0.23 12.2 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain NTP_transferase PF00483.23 gi|352682196|ref|YP_004892720.1| - 5.3e-36 124.5 0.0 6.2e-36 124.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|352682196|ref|YP_004892720.1| - 1.3e-15 58.1 0.2 2e-15 57.5 0.2 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|352682196|ref|YP_004892720.1| - 0.0029 17.4 0.0 0.0066 16.2 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AAA_18 PF13238.6 gi|352682198|ref|YP_004892722.1| - 6.6e-16 59.0 0.0 1.1e-15 58.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|352682198|ref|YP_004892722.1| - 7.1e-06 26.5 0.0 1.2e-05 25.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|352682198|ref|YP_004892722.1| - 2.4e-05 24.6 0.1 4.8e-05 23.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|352682198|ref|YP_004892722.1| - 2.6e-05 24.2 0.2 0.00011 22.2 0.1 1.9 1 1 1 2 2 2 1 NTPase AAA_17 PF13207.6 gi|352682198|ref|YP_004892722.1| - 0.0001 22.8 0.2 0.0003 21.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|352682198|ref|YP_004892722.1| - 0.00028 21.1 0.1 0.00099 19.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352682198|ref|YP_004892722.1| - 0.00035 21.0 0.1 0.00064 20.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|352682198|ref|YP_004892722.1| - 0.00064 20.0 0.1 0.0014 18.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|352682198|ref|YP_004892722.1| - 0.0016 18.2 0.0 0.0042 16.8 0.0 1.7 2 0 0 2 2 2 1 Cytidylate kinase TsaE PF02367.17 gi|352682198|ref|YP_004892722.1| - 0.003 17.6 0.0 0.0058 16.6 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|352682198|ref|YP_004892722.1| - 0.0037 17.2 0.1 0.007 16.4 0.1 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|352682198|ref|YP_004892722.1| - 0.0072 16.2 0.0 0.0097 15.8 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_30 PF13604.6 gi|352682198|ref|YP_004892722.1| - 0.01 15.6 0.1 0.017 14.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|352682198|ref|YP_004892722.1| - 0.011 15.5 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain MeaB PF03308.16 gi|352682198|ref|YP_004892722.1| - 0.012 14.6 0.1 0.02 13.9 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_3 PF07726.11 gi|352682198|ref|YP_004892722.1| - 0.017 14.9 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|352682198|ref|YP_004892722.1| - 0.02 14.7 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 gi|352682198|ref|YP_004892722.1| - 0.028 14.8 0.0 0.051 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KTI12 PF08433.10 gi|352682198|ref|YP_004892722.1| - 0.028 13.9 0.0 0.049 13.1 0.0 1.4 2 0 0 2 2 1 0 Chromatin associated protein KTI12 CbiA PF01656.23 gi|352682198|ref|YP_004892722.1| - 0.03 14.4 0.4 0.073 13.1 0.3 1.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain SKI PF01202.22 gi|352682198|ref|YP_004892722.1| - 0.032 14.4 0.0 0.078 13.1 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase AAA_24 PF13479.6 gi|352682198|ref|YP_004892722.1| - 0.063 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|352682198|ref|YP_004892722.1| - 0.065 13.1 0.0 0.085 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|352682198|ref|YP_004892722.1| - 0.072 13.4 0.5 0.1 12.9 0.5 1.4 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|352682198|ref|YP_004892722.1| - 0.086 12.8 0.0 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain Cytidylate_kin2 PF13189.6 gi|352682198|ref|YP_004892722.1| - 0.086 13.0 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase-like family MMR_HSR1 PF01926.23 gi|352682198|ref|YP_004892722.1| - 0.11 12.6 0.1 0.17 12.0 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AnfO_nitrog PF09582.10 gi|352682198|ref|YP_004892722.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.5 2 0 0 2 2 2 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) ADK PF00406.22 gi|352682198|ref|YP_004892722.1| - 0.13 12.3 0.4 0.88 9.7 0.4 2.4 1 1 0 1 1 1 0 Adenylate kinase APS_kinase PF01583.20 gi|352682198|ref|YP_004892722.1| - 0.16 11.9 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_7 PF12775.7 gi|352682198|ref|YP_004892722.1| - 0.2 11.1 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|352682198|ref|YP_004892722.1| - 0.24 11.0 0.1 0.34 10.5 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain tRNA-synt_2 PF00152.20 gi|352682199|ref|YP_004892723.1| - 2.5e-90 302.8 0.0 2.9e-90 302.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|352682199|ref|YP_004892723.1| - 5e-13 48.8 0.0 1.2e-12 47.6 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|352682199|ref|YP_004892723.1| - 0.015 14.8 0.5 0.11 11.9 0.0 2.4 3 0 0 3 3 3 0 tRNA synthetases class II core domain (F) NAD_binding_2 PF03446.15 gi|352682201|ref|YP_004892725.1| - 1.5e-15 57.7 0.5 3.7e-15 56.5 0.5 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|352682201|ref|YP_004892725.1| - 4.6e-08 33.3 0.1 8.9e-08 32.4 0.1 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|352682201|ref|YP_004892725.1| - 2.4e-05 23.8 0.0 3.6e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|352682201|ref|YP_004892725.1| - 3.6e-05 24.3 0.3 0.00013 22.5 0.0 2.1 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|352682201|ref|YP_004892725.1| - 0.0042 17.0 0.8 0.006 16.5 0.8 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|352682201|ref|YP_004892725.1| - 0.028 14.4 0.1 0.049 13.6 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|352682201|ref|YP_004892725.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|352682201|ref|YP_004892725.1| - 0.11 12.4 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 NAD(P)H-binding NmrA PF05368.13 gi|352682201|ref|YP_004892725.1| - 0.11 12.0 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 NmrA-like family AlaDh_PNT_C PF01262.21 gi|352682201|ref|YP_004892725.1| - 0.12 11.6 1.4 0.54 9.5 0.9 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Radical_SAM PF04055.21 gi|352682201|ref|YP_004892725.1| - 0.15 12.5 0.0 0.85 10.0 0.0 2.0 1 1 1 2 2 2 0 Radical SAM superfamily Sua5_yciO_yrdC PF01300.18 gi|352682202|ref|YP_004892726.1| - 6.7e-57 191.9 0.0 1e-56 191.2 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|352682202|ref|YP_004892726.1| - 1.4e-28 100.2 0.0 2e-28 99.6 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding MttA_Hcf106 PF02416.16 gi|352682202|ref|YP_004892726.1| - 0.044 13.1 0.8 0.45 9.9 0.1 2.5 3 0 0 3 3 3 0 mttA/Hcf106 family Methyltransf_25 PF13649.6 gi|352682203|ref|YP_004892727.1| - 3.9e-07 30.7 0.0 6.7e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|352682203|ref|YP_004892727.1| - 0.00017 22.1 0.0 0.0003 21.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|352682203|ref|YP_004892727.1| - 0.0027 17.0 0.0 0.0046 16.3 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|352682203|ref|YP_004892727.1| - 0.0071 16.2 0.0 0.015 15.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Pribosyltran_N PF13793.6 gi|352682204|ref|YP_004892728.1| - 5.7e-23 81.1 0.0 1.3e-21 76.7 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|352682204|ref|YP_004892728.1| - 9.2e-14 51.3 0.0 7.1e-13 48.4 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|352682204|ref|YP_004892728.1| - 8.4e-08 32.5 0.1 4.9e-07 30.0 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain Hist_deacetyl PF00850.19 gi|352682205|ref|YP_004892729.1| - 1.6e-67 228.2 0.0 2e-67 227.8 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain DUF3090 PF11290.8 gi|352682206|ref|YP_004892730.1| - 0.037 13.8 0.2 0.04 13.7 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) Creatininase PF02633.14 gi|352682207|ref|YP_004892731.1| - 2.6e-32 112.2 0.0 3.5e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase GCH_III PF05165.12 gi|352682208|ref|YP_004892732.1| - 2.4e-29 102.3 0.0 1.5e-13 50.6 0.0 2.1 1 1 1 2 2 2 2 GTP cyclohydrolase III RibD_C PF01872.17 gi|352682209|ref|YP_004892733.1| - 3.1e-47 161.0 0.0 3.4e-47 160.9 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DHBP_synthase PF00926.19 gi|352682210|ref|YP_004892734.1| - 1.3e-45 155.3 0.0 1.5e-45 155.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CP_ATPgrasp_2 PF14403.6 gi|352682210|ref|YP_004892734.1| - 0.0069 15.4 0.0 0.0099 14.8 0.0 1.2 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 HTH_IclR PF09339.10 gi|352682210|ref|YP_004892734.1| - 0.017 14.9 1.0 1.9 8.3 0.0 3.7 3 1 1 4 4 4 0 IclR helix-turn-helix domain CP_ATPgrasp_1 PF04174.13 gi|352682210|ref|YP_004892734.1| - 0.04 12.9 0.0 0.058 12.4 0.0 1.2 1 0 0 1 1 1 0 A circularly permuted ATPgrasp CxxCxxCC PF03692.15 gi|352682211|ref|YP_004892735.1| - 2.4e-17 63.4 1.0 3.7e-17 62.8 1.0 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain 2-Hacid_dh_C PF02826.19 gi|352682212|ref|YP_004892736.1| - 2.3e-63 212.8 0.0 3.5e-63 212.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|352682212|ref|YP_004892736.1| - 5.9e-34 116.6 0.0 7.1e-34 116.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|352682212|ref|YP_004892736.1| - 4.7e-09 36.6 0.0 1.9e-08 34.6 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|352682212|ref|YP_004892736.1| - 1.1e-05 25.9 0.1 3.9e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|352682212|ref|YP_004892736.1| - 0.0004 20.0 0.0 0.0024 17.5 0.0 2.1 2 1 1 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|352682212|ref|YP_004892736.1| - 0.00097 19.2 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|352682212|ref|YP_004892736.1| - 0.001 19.5 0.0 0.0027 18.1 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|352682212|ref|YP_004892736.1| - 0.006 16.7 0.0 0.015 15.4 0.0 1.6 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|352682212|ref|YP_004892736.1| - 0.03 13.9 0.2 0.082 12.5 0.1 1.7 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|352682212|ref|YP_004892736.1| - 0.037 14.0 1.0 0.18 11.8 0.1 2.4 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Mur_ligase PF01225.25 gi|352682212|ref|YP_004892736.1| - 0.096 13.0 0.4 1.5 9.2 0.0 2.7 4 0 0 4 4 4 0 Mur ligase family, catalytic domain TrmO PF01980.16 gi|352682213|ref|YP_004892737.1| - 1.4e-26 93.1 0.0 1.7e-26 92.8 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O DUF4382 PF14321.6 gi|352682214|ref|YP_004892738.1| - 9.4e-12 45.4 0.0 1.1e-11 45.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) NUDIX PF00293.28 gi|352682215|ref|YP_004892739.1| - 5.1e-13 49.2 1.2 8.3e-13 48.5 1.2 1.4 1 1 0 1 1 1 1 NUDIX domain NitrOD5 PF11537.8 gi|352682216|ref|YP_004892740.1| - 0.087 13.0 0.1 0.088 13.0 0.1 1.1 1 0 0 1 1 1 0 Nitrosopumilus output domain 5 CoA_transf_3 PF02515.17 gi|352682217|ref|YP_004892741.1| - 1.5e-125 419.2 0.0 1.7e-125 419.0 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III MarC PF01914.17 gi|352682218|ref|YP_004892742.1| - 2.2e-35 121.9 13.2 2.9e-35 121.5 13.2 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Cren7 PF11520.8 gi|352682219|ref|YP_004892743.1| - 2.3e-17 62.7 2.6 2.5e-17 62.5 2.6 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 T6SS-SciN PF12790.7 gi|352682219|ref|YP_004892743.1| - 0.11 12.2 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 Meth_synt_2 PF01717.18 gi|352682220|ref|YP_004892744.1| - 1.1e-31 110.4 0.0 2.9e-18 66.2 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|352682220|ref|YP_004892744.1| - 0.035 13.6 0.0 0.29 10.6 0.0 2.4 3 0 0 3 3 3 0 Cobalamin-independent synthase, N-terminal domain DUF262 PF03235.14 gi|352682220|ref|YP_004892744.1| - 0.24 11.6 0.0 0.38 10.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function DUF262 OB_aCoA_assoc PF01796.17 gi|352682221|ref|YP_004892745.1| - 4.9e-16 58.5 0.3 7.9e-16 57.8 0.3 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|352682221|ref|YP_004892745.1| - 4.7e-12 45.5 0.7 4.7e-12 45.5 0.7 2.0 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|352682221|ref|YP_004892745.1| - 0.007 16.0 0.2 0.01 15.5 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|352682221|ref|YP_004892745.1| - 0.013 15.0 0.4 1.6 8.3 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|352682221|ref|YP_004892745.1| - 0.03 14.4 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|352682221|ref|YP_004892745.1| - 0.079 13.1 0.1 0.14 12.3 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Thiolase_N PF00108.23 gi|352682222|ref|YP_004892746.1| - 5e-26 91.6 0.0 2.1e-25 89.6 0.0 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|352682222|ref|YP_004892746.1| - 5.5e-09 35.7 0.1 1.4e-07 31.2 0.0 2.9 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|352682222|ref|YP_004892746.1| - 6.6e-05 22.6 1.9 6.6e-05 22.6 1.9 3.1 3 1 0 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|352682222|ref|YP_004892746.1| - 0.00015 21.5 0.1 0.0028 17.4 0.1 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HSP70 PF00012.20 gi|352682222|ref|YP_004892746.1| - 0.056 11.6 0.0 0.077 11.2 0.0 1.1 1 0 0 1 1 1 0 Hsp70 protein Acyl-CoA_dh_1 PF00441.24 gi|352682223|ref|YP_004892747.1| - 9.1e-44 149.3 4.7 9.2e-44 149.3 3.3 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|352682223|ref|YP_004892747.1| - 1.5e-35 122.2 0.3 4.5e-35 120.7 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|352682223|ref|YP_004892747.1| - 7e-27 93.5 0.0 1.2e-26 92.8 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|352682223|ref|YP_004892747.1| - 2e-21 76.7 1.2 3e-21 76.1 1.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain AgrD PF05931.11 gi|352682223|ref|YP_004892747.1| - 0.047 13.7 0.1 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 Staphylococcal AgrD protein Rad60-SLD PF11976.8 gi|352682223|ref|YP_004892747.1| - 0.15 11.9 0.0 6.4 6.7 0.0 2.3 2 0 0 2 2 2 0 Ubiquitin-2 like Rad60 SUMO-like Acyl-CoA_ox_N PF14749.6 gi|352682223|ref|YP_004892747.1| - 0.17 12.5 0.0 0.41 11.2 0.0 1.6 2 0 0 2 2 2 0 Acyl-coenzyme A oxidase N-terminal AMP-binding PF00501.28 gi|352682224|ref|YP_004892748.1| - 3e-109 365.4 0.0 3.6e-109 365.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|352682224|ref|YP_004892748.1| - 1.5e-22 80.3 0.6 4.9e-22 78.7 0.6 2.0 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|352682225|ref|YP_004892749.1| - 5.7e-77 259.1 0.0 7e-77 258.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|352682225|ref|YP_004892749.1| - 4.1e-21 75.8 0.0 4.1e-20 72.5 0.0 2.5 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain TetM_leader PF08076.11 gi|352682225|ref|YP_004892749.1| - 0.23 11.3 2.2 3 7.7 1.5 2.3 2 0 0 2 2 2 0 Tetracycline resistance determinant leader peptide Peptidase_M42 PF05343.14 gi|352682226|ref|YP_004892750.1| - 3.1e-103 344.8 0.1 3.6e-103 344.6 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|352682226|ref|YP_004892750.1| - 4.9e-10 39.5 0.1 7.7e-10 38.8 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|352682226|ref|YP_004892750.1| - 1.6e-05 24.7 0.1 0.00025 20.8 0.0 2.3 2 0 0 2 2 2 1 Peptidase family M28 Nup35_RRM_2 PF14605.6 gi|352682226|ref|YP_004892750.1| - 0.14 12.1 0.0 0.86 9.6 0.0 2.2 2 0 0 2 2 2 0 Nup53/35/40-type RNA recognition motif ECH_1 PF00378.20 gi|352682227|ref|YP_004892751.1| - 1.1e-67 228.0 0.0 1.7e-67 227.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|352682227|ref|YP_004892751.1| - 3.5e-65 219.3 0.6 5.6e-65 218.6 0.6 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|352682227|ref|YP_004892751.1| - 3e-51 172.0 0.1 1.6e-25 89.5 0.0 2.9 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|352682227|ref|YP_004892751.1| - 2.3e-39 135.9 0.0 1.5e-35 123.3 0.0 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase F420_oxidored PF03807.17 gi|352682227|ref|YP_004892751.1| - 0.00013 22.5 0.9 0.00049 20.6 0.9 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|352682227|ref|YP_004892751.1| - 0.00029 21.0 0.1 0.0011 19.2 0.0 2.0 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|352682227|ref|YP_004892751.1| - 0.00032 20.0 0.3 0.00056 19.2 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|352682227|ref|YP_004892751.1| - 0.0088 16.0 0.3 0.025 14.5 0.3 1.8 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|352682227|ref|YP_004892751.1| - 0.01 16.4 0.2 0.23 11.9 0.0 2.4 2 0 0 2 2 2 1 XdhC Rossmann domain CbiA PF01656.23 gi|352682227|ref|YP_004892751.1| - 0.013 15.5 0.1 0.074 13.1 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain UDPG_MGDP_dh_N PF03721.14 gi|352682227|ref|YP_004892751.1| - 0.018 14.6 0.1 0.046 13.3 0.1 1.8 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|352682227|ref|YP_004892751.1| - 0.019 15.5 2.5 0.042 14.4 0.3 2.6 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|352682227|ref|YP_004892751.1| - 0.027 14.0 0.6 0.13 11.7 0.1 2.2 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase TrkA_N PF02254.18 gi|352682227|ref|YP_004892751.1| - 0.043 14.1 0.5 0.23 11.7 0.1 2.5 3 0 0 3 3 3 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|352682227|ref|YP_004892751.1| - 0.046 13.1 0.1 0.093 12.1 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BLACT_WH PF17778.1 gi|352682227|ref|YP_004892751.1| - 0.083 12.9 0.2 0.23 11.5 0.2 1.7 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain adh_short PF00106.25 gi|352682227|ref|YP_004892751.1| - 0.084 12.3 0.2 0.21 11.0 0.2 1.7 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_7 PF13241.6 gi|352682227|ref|YP_004892751.1| - 0.13 12.7 0.4 0.37 11.2 0.4 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding Thiolase_N PF00108.23 gi|352682228|ref|YP_004892752.1| - 9.5e-69 231.6 0.0 1.3e-68 231.1 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|352682228|ref|YP_004892752.1| - 7.2e-48 161.3 0.4 2.9e-47 159.3 0.2 2.0 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|352682228|ref|YP_004892752.1| - 6.3e-07 29.2 0.2 4.7e-06 26.4 0.0 2.5 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Apocytochr_F_N PF16639.5 gi|352682228|ref|YP_004892752.1| - 0.039 14.2 0.0 0.12 12.7 0.0 1.8 1 0 0 1 1 1 0 Apocytochrome F, N-terminal ACP_syn_III_C PF08541.10 gi|352682228|ref|YP_004892752.1| - 0.048 13.8 0.1 2.5 8.3 0.0 3.1 3 1 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SpoVAD PF07451.11 gi|352682228|ref|YP_004892752.1| - 0.056 12.1 0.0 0.12 11.0 0.0 1.5 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) eIF-5_eIF-2B PF01873.17 gi|352682229|ref|YP_004892753.1| - 4.1e-31 107.3 0.0 4.9e-31 107.0 0.0 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|352682229|ref|YP_004892753.1| - 8.3e-05 22.9 0.5 0.00015 22.0 0.5 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|352682229|ref|YP_004892753.1| - 0.0021 17.5 0.7 0.0035 16.8 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|352682229|ref|YP_004892753.1| - 0.02 14.6 0.1 6.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF35_N PF12172.8 gi|352682229|ref|YP_004892753.1| - 0.028 14.3 3.5 0.19 11.7 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|352682229|ref|YP_004892753.1| - 0.03 14.4 0.0 12 6.1 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|352682229|ref|YP_004892753.1| - 0.052 13.5 0.1 0.091 12.7 0.1 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Elf1 PF05129.13 gi|352682229|ref|YP_004892753.1| - 0.059 13.4 0.1 0.11 12.6 0.1 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like CpXC PF14353.6 gi|352682229|ref|YP_004892753.1| - 0.061 13.4 0.1 16 5.6 0.0 2.4 1 1 1 2 2 2 0 CpXC protein NOB1_Zn_bind PF08772.11 gi|352682229|ref|YP_004892753.1| - 0.083 13.1 1.4 0.74 10.0 0.2 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like SUI1 PF01253.22 gi|352682229|ref|YP_004892753.1| - 0.092 13.3 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor SUI1 zf-ribbon_3 PF13248.6 gi|352682229|ref|YP_004892753.1| - 0.097 12.1 1.0 2.7 7.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352682229|ref|YP_004892753.1| - 0.11 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|352682229|ref|YP_004892753.1| - 0.12 12.1 3.2 4.7 7.0 0.4 2.2 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TusA PF01206.17 gi|352682230|ref|YP_004892754.1| - 3.1e-11 42.9 0.0 3.4e-11 42.8 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Lem_TRP PF08262.11 gi|352682230|ref|YP_004892754.1| - 0.13 12.2 0.2 0.3 11.2 0.2 1.6 1 0 0 1 1 1 0 Leucophaea maderae tachykinin-related peptide DUF4232 PF14016.6 gi|352682230|ref|YP_004892754.1| - 0.14 12.3 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4232) DrsE PF02635.15 gi|352682231|ref|YP_004892755.1| - 9.9e-13 48.5 0.0 1.2e-12 48.3 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|352682231|ref|YP_004892755.1| - 4.6e-11 42.8 0.1 8.4e-06 25.8 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family PALP PF00291.25 gi|352682231|ref|YP_004892755.1| - 0.11 11.9 0.6 4.6 6.6 0.2 2.1 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme RtcB PF01139.17 gi|352682232|ref|YP_004892756.1| - 5.1e-162 539.8 0.0 7.3e-162 539.2 0.0 1.2 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Alpha-amyl_C PF09071.10 gi|352682232|ref|YP_004892756.1| - 0.054 13.3 0.0 0.36 10.7 0.0 2.4 3 0 0 3 3 3 0 Alpha-amylase, C terminal CorA PF01544.18 gi|352682233|ref|YP_004892757.1| - 1.1e-19 70.9 1.3 1.5e-19 70.5 1.3 1.3 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF1512 PF07431.12 gi|352682234|ref|YP_004892758.1| - 3.7e-130 434.1 0.2 4.3e-130 433.9 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) SR-25 PF10500.9 gi|352682234|ref|YP_004892758.1| - 0.31 10.6 0.1 0.46 10.0 0.1 1.2 1 0 0 1 1 1 0 Nuclear RNA-splicing-associated protein Gram_pos_anchor PF00746.21 gi|352682235|ref|YP_004892759.1| - 0.21 11.6 0.7 0.42 10.6 0.7 1.5 1 0 0 1 1 1 0 LPXTG cell wall anchor motif ThrE PF06738.12 gi|352682236|ref|YP_004892760.1| - 0.42 9.9 7.5 0.47 9.8 7.5 1.0 1 0 0 1 1 1 0 Putative threonine/serine exporter DUF4191 PF13829.6 gi|352682236|ref|YP_004892760.1| - 0.87 8.9 2.2 0.88 8.9 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF948 PF06103.11 gi|352682237|ref|YP_004892761.1| - 0.00032 20.9 14.0 0.42 10.9 1.6 5.2 1 1 3 4 4 4 2 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.6 gi|352682237|ref|YP_004892761.1| - 0.00043 19.1 9.8 0.00043 19.1 9.8 3.1 1 1 2 3 3 3 1 AAA domain Baculo_PEP_C PF04513.12 gi|352682237|ref|YP_004892761.1| - 0.00045 20.3 18.6 0.72 9.9 0.1 4.9 2 1 2 4 4 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus IFT57 PF10498.9 gi|352682237|ref|YP_004892761.1| - 0.00079 18.5 36.0 0.0078 15.2 4.1 4.2 1 1 2 4 4 4 1 Intra-flagellar transport protein 57 NPV_P10 PF05531.12 gi|352682237|ref|YP_004892761.1| - 0.0015 18.9 18.6 19 5.8 0.8 6.0 2 1 2 4 4 3 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|352682237|ref|YP_004892761.1| - 0.007 15.3 59.0 0.1 11.4 28.2 4.2 1 1 3 4 4 4 3 Spc7 kinetochore protein ACR_tran PF00873.19 gi|352682237|ref|YP_004892761.1| - 0.0079 13.9 1.4 0.014 13.1 1.4 1.5 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family APG17 PF04108.12 gi|352682237|ref|YP_004892761.1| - 0.0095 15.1 34.4 0.074 12.1 0.7 4.5 1 1 3 4 4 4 3 Autophagy protein Apg17 UPF0242 PF06785.11 gi|352682237|ref|YP_004892761.1| - 0.011 15.9 46.3 0.053 13.6 21.2 3.1 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus FPP PF05911.11 gi|352682237|ref|YP_004892761.1| - 0.014 13.7 39.8 0.0013 17.1 30.2 2.1 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil Fib_alpha PF08702.10 gi|352682237|ref|YP_004892761.1| - 0.03 14.5 28.7 0.06 13.5 3.2 4.7 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family HOOK PF05622.12 gi|352682237|ref|YP_004892761.1| - 0.031 12.4 49.3 0.049 11.8 30.5 2.5 1 1 1 2 2 2 0 HOOK protein HsbA PF12296.8 gi|352682237|ref|YP_004892761.1| - 0.034 14.6 6.8 4.9 7.6 0.0 3.2 1 1 0 2 2 2 0 Hydrophobic surface binding protein A DUF1409 PF07197.12 gi|352682237|ref|YP_004892761.1| - 0.047 13.6 1.6 39 4.2 0.1 4.4 3 1 0 3 3 3 0 Protein of unknown function (DUF1409) DUF4200 PF13863.6 gi|352682237|ref|YP_004892761.1| - 0.047 14.1 62.8 2.5 8.5 4.8 4.7 2 1 2 4 4 4 0 Domain of unknown function (DUF4200) Sec34 PF04136.15 gi|352682237|ref|YP_004892761.1| - 0.059 13.3 24.0 3.6 7.5 0.3 5.0 1 1 5 6 6 6 0 Sec34-like family WXG100 PF06013.12 gi|352682237|ref|YP_004892761.1| - 0.077 13.2 22.1 23 5.3 0.1 7.7 5 3 1 7 7 6 0 Proteins of 100 residues with WXG DUF3552 PF12072.8 gi|352682237|ref|YP_004892761.1| - 0.11 11.9 67.0 0.16 11.4 5.3 5.1 1 1 4 5 5 5 0 Domain of unknown function (DUF3552) DUF2203 PF09969.9 gi|352682237|ref|YP_004892761.1| - 0.13 13.0 46.3 0.24 12.1 4.8 5.8 1 1 5 6 6 6 0 Uncharacterized conserved protein (DUF2203) OmpH PF03938.14 gi|352682237|ref|YP_004892761.1| - 0.15 12.4 55.1 0.14 12.5 6.6 4.8 1 1 3 4 4 4 0 Outer membrane protein (OmpH-like) HMMR_N PF15905.5 gi|352682237|ref|YP_004892761.1| - 0.17 11.3 50.7 0.022 14.3 35.2 3.1 1 1 2 3 3 3 0 Hyaluronan mediated motility receptor N-terminal Turandot PF07240.11 gi|352682237|ref|YP_004892761.1| - 0.22 11.5 0.9 0.78 9.7 0.2 2.3 2 0 0 2 2 1 0 Stress-inducible humoral factor Turandot MscS_porin PF12795.7 gi|352682237|ref|YP_004892761.1| - 0.25 10.9 59.7 0.42 10.1 24.2 4.3 1 1 3 4 4 4 0 Mechanosensitive ion channel porin domain Desmo_N PF06771.11 gi|352682237|ref|YP_004892761.1| - 0.25 11.7 2.3 70 3.9 0.1 3.7 2 2 2 4 4 3 0 Viral Desmoplakin N-terminus BLOC1_2 PF10046.9 gi|352682237|ref|YP_004892761.1| - 0.37 11.1 39.2 17 5.8 1.6 7.0 1 1 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF812 PF05667.11 gi|352682237|ref|YP_004892761.1| - 0.37 9.6 42.8 0.087 11.7 39.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Mce4_CUP1 PF11887.8 gi|352682237|ref|YP_004892761.1| - 0.41 10.1 7.8 1.1 8.6 2.8 3.1 1 1 2 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF16 PF01519.16 gi|352682237|ref|YP_004892761.1| - 0.48 10.9 30.3 3 8.4 1.4 5.7 1 1 4 5 5 5 0 Protein of unknown function DUF16 DUF1664 PF07889.12 gi|352682237|ref|YP_004892761.1| - 0.68 10.0 28.7 2.5 8.1 0.6 5.8 1 1 6 7 7 7 0 Protein of unknown function (DUF1664) Exonuc_VII_L PF02601.15 gi|352682237|ref|YP_004892761.1| - 0.76 9.3 42.8 2.6 7.5 9.8 3.3 1 1 2 3 3 3 0 Exonuclease VII, large subunit GAS PF13851.6 gi|352682237|ref|YP_004892761.1| - 1.1 8.6 56.0 1.8 7.9 7.5 4.5 1 1 3 4 4 4 0 Growth-arrest specific micro-tubule binding MCPsignal PF00015.21 gi|352682237|ref|YP_004892761.1| - 1.6 8.5 19.1 11 5.8 5.6 4.5 1 1 4 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Retrotrans_gag PF03732.17 gi|352682237|ref|YP_004892761.1| - 1.7 9.0 0.0 1.7 9.0 0.0 3.8 1 1 1 3 3 3 0 Retrotransposon gag protein ATG16 PF08614.11 gi|352682237|ref|YP_004892761.1| - 1.8 8.8 65.8 0.072 13.3 23.7 3.6 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) DUF3970 PF13113.6 gi|352682237|ref|YP_004892761.1| - 1.8 8.8 6.2 8.9 6.6 3.9 3.1 3 0 0 3 3 2 0 Protein of unknown function (DUF3970) Fucose_iso_N2 PF07882.12 gi|352682237|ref|YP_004892761.1| - 2.2 7.8 4.9 6.6 6.3 4.9 1.7 1 0 0 1 1 1 0 L-fucose isomerase, second N-terminal domain Laminin_II PF06009.12 gi|352682237|ref|YP_004892761.1| - 2.6 8.1 38.2 0.39 10.7 8.5 5.4 1 1 6 7 7 7 0 Laminin Domain II Spectrin PF00435.21 gi|352682237|ref|YP_004892761.1| - 2.8 8.5 39.9 1.2 9.7 6.7 5.8 1 1 7 8 8 8 0 Spectrin repeat Fez1 PF06818.15 gi|352682237|ref|YP_004892761.1| - 3.2 8.2 51.6 8.3 6.8 20.7 3.8 1 1 2 3 3 3 0 Fez1 MPS2 PF17060.5 gi|352682237|ref|YP_004892761.1| - 4.1 6.6 32.1 3.3 6.9 16.1 2.7 1 1 2 3 3 3 0 Monopolar spindle protein 2 TACC_C PF05010.14 gi|352682237|ref|YP_004892761.1| - 5.2 6.8 41.3 13 5.5 5.1 3.7 1 1 3 4 4 4 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Seryl_tRNA_N PF02403.22 gi|352682237|ref|YP_004892761.1| - 5.7 7.2 50.8 1.4 9.1 15.8 5.8 2 1 4 7 7 7 0 Seryl-tRNA synthetase N-terminal domain Rab5-bind PF09311.11 gi|352682237|ref|YP_004892761.1| - 6.4 6.1 44.4 2.8 7.2 36.4 2.3 1 1 1 2 2 2 0 Rabaptin-like protein Cluap1 PF10234.9 gi|352682237|ref|YP_004892761.1| - 7.9 5.8 49.7 0.43 9.9 7.9 3.8 1 1 2 4 4 4 0 Clusterin-associated protein-1 DUF3584 PF12128.8 gi|352682237|ref|YP_004892761.1| - 9 3.7 50.7 0.01 13.4 2.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) LXG PF04740.12 gi|352682238|ref|YP_004892762.1| - 0.0019 17.9 0.4 0.0025 17.6 0.4 1.4 1 1 0 1 1 1 1 LXG domain of WXG superfamily ADIP PF11559.8 gi|352682238|ref|YP_004892762.1| - 0.0021 18.2 0.5 0.0025 17.9 0.5 1.1 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding ABC_tran_CTD PF16326.5 gi|352682238|ref|YP_004892762.1| - 0.0032 17.7 4.4 0.041 14.1 0.2 2.2 1 1 1 2 2 2 1 ABC transporter C-terminal domain FliJ PF02050.16 gi|352682238|ref|YP_004892762.1| - 0.0088 16.3 2.8 0.014 15.6 2.8 1.4 1 1 0 1 1 1 1 Flagellar FliJ protein NPV_P10 PF05531.12 gi|352682238|ref|YP_004892762.1| - 0.0096 16.4 2.3 0.22 12.0 0.1 2.7 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|352682238|ref|YP_004892762.1| - 0.012 15.6 0.7 0.029 14.4 0.7 1.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ALIX_LYPXL_bnd PF13949.6 gi|352682238|ref|YP_004892762.1| - 0.012 14.9 4.1 0.016 14.6 4.1 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV TPR_MLP1_2 PF07926.12 gi|352682238|ref|YP_004892762.1| - 0.016 15.3 2.5 0.016 15.3 2.5 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein SlyX PF04102.12 gi|352682238|ref|YP_004892762.1| - 0.022 15.4 1.1 0.022 15.4 1.1 3.0 2 1 0 2 2 2 0 SlyX GCIP PF13324.6 gi|352682238|ref|YP_004892762.1| - 0.022 14.4 0.7 0.034 13.8 0.1 1.6 2 0 0 2 2 2 0 Grap2 and cyclin-D-interacting DUF948 PF06103.11 gi|352682238|ref|YP_004892762.1| - 0.024 14.9 0.5 0.096 13.0 0.5 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) AATF-Che1 PF13339.6 gi|352682238|ref|YP_004892762.1| - 0.027 15.1 3.7 0.59 10.8 0.4 2.0 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor ApoLp-III PF07464.11 gi|352682238|ref|YP_004892762.1| - 0.036 14.1 1.6 0.16 12.1 1.6 1.9 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) MbeD_MobD PF04899.12 gi|352682238|ref|YP_004892762.1| - 0.041 14.0 4.1 0.16 12.1 0.3 2.4 2 1 0 2 2 2 0 MbeD/MobD like Snapin_Pallidin PF14712.6 gi|352682238|ref|YP_004892762.1| - 0.049 14.0 0.5 0.049 14.0 0.5 2.1 1 1 1 2 2 2 0 Snapin/Pallidin Csm1_N PF18504.1 gi|352682238|ref|YP_004892762.1| - 0.052 13.9 8.9 0.13 12.6 3.1 2.2 2 0 0 2 2 2 0 Csm1 N-terminal domain DUF1664 PF07889.12 gi|352682238|ref|YP_004892762.1| - 0.052 13.6 1.6 7.9 6.5 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Syntaxin-6_N PF09177.11 gi|352682238|ref|YP_004892762.1| - 0.055 14.0 3.3 0.34 11.5 3.2 2.0 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Sec34 PF04136.15 gi|352682238|ref|YP_004892762.1| - 0.067 13.1 0.6 7.2 6.5 0.0 2.1 2 0 0 2 2 2 0 Sec34-like family DUF2730 PF10805.8 gi|352682238|ref|YP_004892762.1| - 0.067 13.3 2.0 0.25 11.5 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2730) TFA2_Winged_2 PF18121.1 gi|352682238|ref|YP_004892762.1| - 0.11 12.2 0.7 0.58 9.9 0.4 2.4 1 1 0 1 1 1 0 TFA2 Winged helix domain 2 LPP PF04728.13 gi|352682238|ref|YP_004892762.1| - 0.11 12.9 1.9 0.84 10.1 1.9 2.2 1 1 0 1 1 1 0 Lipoprotein leucine-zipper DUF885 PF05960.11 gi|352682238|ref|YP_004892762.1| - 0.12 12.0 1.9 0.17 11.5 1.7 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Fib_alpha PF08702.10 gi|352682238|ref|YP_004892762.1| - 0.12 12.5 1.1 0.25 11.5 1.1 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Lpp-LpqN PF10738.9 gi|352682238|ref|YP_004892762.1| - 0.15 11.5 0.0 0.19 11.2 0.0 1.1 1 0 0 1 1 1 0 Probable lipoprotein LpqN Sas10_Utp3 PF04000.15 gi|352682238|ref|YP_004892762.1| - 0.15 12.7 2.2 1.8 9.2 2.2 2.6 1 1 0 1 1 1 0 Sas10/Utp3/C1D family DASH_Dad3 PF08656.10 gi|352682238|ref|YP_004892762.1| - 0.15 12.1 3.0 0.62 10.2 3.0 2.1 1 1 0 1 1 1 0 DASH complex subunit Dad3 CENP-H PF05837.12 gi|352682238|ref|YP_004892762.1| - 0.17 12.3 5.6 2.8 8.4 0.6 2.1 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Sec2p PF06428.11 gi|352682238|ref|YP_004892762.1| - 0.18 11.8 7.7 1.1 9.2 2.3 2.4 1 1 1 2 2 2 0 GDP/GTP exchange factor Sec2p 3HCDH_N PF02737.18 gi|352682238|ref|YP_004892762.1| - 0.24 11.3 1.5 2.5 8.0 1.5 2.0 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Spidroin_MaSp PF11260.8 gi|352682238|ref|YP_004892762.1| - 0.24 11.7 1.6 1.7 9.0 0.3 2.4 1 1 1 2 2 2 0 Major ampullate spidroin 1 and 2 LMBR1 PF04791.16 gi|352682238|ref|YP_004892762.1| - 0.32 9.8 2.2 0.36 9.7 2.2 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein FlaC_arch PF05377.11 gi|352682238|ref|YP_004892762.1| - 0.33 11.4 2.1 1.4 9.4 0.1 2.5 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF16 PF01519.16 gi|352682238|ref|YP_004892762.1| - 0.35 11.4 3.2 3.1 8.3 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 Spc7 PF08317.11 gi|352682238|ref|YP_004892762.1| - 0.35 9.7 7.0 2.5 6.9 6.1 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein Apolipoprotein PF01442.18 gi|352682238|ref|YP_004892762.1| - 0.35 10.7 10.7 0.88 9.4 6.8 1.9 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Laminin_II PF06009.12 gi|352682238|ref|YP_004892762.1| - 0.48 10.4 5.8 1.1 9.3 5.8 1.6 1 1 0 1 1 1 0 Laminin Domain II DivIVA PF05103.13 gi|352682238|ref|YP_004892762.1| - 0.51 10.4 5.2 2.1 8.5 0.1 2.4 2 1 0 2 2 2 0 DivIVA protein CorA PF01544.18 gi|352682238|ref|YP_004892762.1| - 0.65 9.3 4.0 0.76 9.0 1.1 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein PEP-utilisers_N PF05524.13 gi|352682238|ref|YP_004892762.1| - 2.6 8.3 6.2 22 5.3 4.0 2.7 1 1 1 2 2 2 0 PEP-utilising enzyme, N-terminal APG6_N PF17675.1 gi|352682238|ref|YP_004892762.1| - 2.7 8.5 12.0 25 5.4 12.1 1.9 1 1 0 1 1 1 0 Apg6 coiled-coil region Hexapep PF00132.24 gi|352682239|ref|YP_004892763.1| - 3.6e-25 86.7 32.9 1.3e-07 31.1 0.9 5.6 4 1 2 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|352682239|ref|YP_004892763.1| - 1.9e-16 59.5 26.9 4.7e-07 29.5 3.4 6.0 5 1 1 6 6 6 6 Hexapeptide repeat of succinyl-transferase Hexapep_loop PF18776.1 gi|352682239|ref|YP_004892763.1| - 0.093 12.4 0.0 13 5.5 0.0 2.4 2 0 0 2 2 2 0 Hexapeptide repeat including loop AAA PF00004.29 gi|352682240|ref|YP_004892764.1| - 1.9e-99 329.2 0.0 3.7e-50 169.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|352682240|ref|YP_004892764.1| - 2.2e-34 117.0 2.8 6.2e-18 64.3 0.3 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|352682240|ref|YP_004892764.1| - 1e-32 112.1 0.7 4.3e-32 110.1 0.7 2.1 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|352682240|ref|YP_004892764.1| - 1.4e-16 60.6 0.0 2.9e-08 33.6 0.0 2.7 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|352682240|ref|YP_004892764.1| - 7.7e-15 55.4 0.0 6.7e-08 32.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|352682240|ref|YP_004892764.1| - 9.4e-13 48.9 0.0 5.1e-06 27.0 0.0 3.6 2 1 0 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|352682240|ref|YP_004892764.1| - 2.6e-11 43.9 0.1 0.00016 21.9 0.0 3.8 2 2 1 4 4 4 2 AAA domain CDC48_2 PF02933.17 gi|352682240|ref|YP_004892764.1| - 2.9e-11 43.0 0.6 7.3e-11 41.7 0.4 1.9 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_5 PF07728.14 gi|352682240|ref|YP_004892764.1| - 9.9e-11 41.8 0.3 0.00071 19.6 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|352682240|ref|YP_004892764.1| - 1.3e-10 41.4 0.0 2.5e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|352682240|ref|YP_004892764.1| - 7.6e-10 39.1 0.0 0.0011 19.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain Vps4_C PF09336.10 gi|352682240|ref|YP_004892764.1| - 1.4e-08 34.6 0.7 0.00064 19.7 0.0 3.1 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain TIP49 PF06068.13 gi|352682240|ref|YP_004892764.1| - 2e-08 33.9 0.1 0.0033 16.7 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_24 PF13479.6 gi|352682240|ref|YP_004892764.1| - 4e-08 33.2 0.0 0.011 15.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|352682240|ref|YP_004892764.1| - 4.4e-08 33.7 0.0 0.0065 17.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|352682240|ref|YP_004892764.1| - 6.9e-08 32.4 0.0 0.0087 15.8 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|352682240|ref|YP_004892764.1| - 3.3e-07 30.6 0.0 0.029 14.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|352682240|ref|YP_004892764.1| - 2.5e-06 27.0 0.4 0.065 12.6 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|352682240|ref|YP_004892764.1| - 3e-06 27.2 0.0 0.12 12.4 0.0 2.9 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase_2 PF01637.18 gi|352682240|ref|YP_004892764.1| - 4e-06 26.9 0.1 0.011 15.6 0.1 3.1 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|352682240|ref|YP_004892764.1| - 1.4e-05 25.0 0.1 0.21 11.5 0.1 3.2 3 0 0 3 3 3 2 NACHT domain Sigma54_activat PF00158.26 gi|352682240|ref|YP_004892764.1| - 1.5e-05 24.7 0.0 0.22 11.2 0.0 3.3 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_28 PF13521.6 gi|352682240|ref|YP_004892764.1| - 2e-05 24.9 0.0 0.065 13.5 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|352682240|ref|YP_004892764.1| - 3.5e-05 23.5 4.0 0.44 10.1 0.1 4.0 3 2 0 3 3 3 2 AAA domain DUF815 PF05673.13 gi|352682240|ref|YP_004892764.1| - 9e-05 21.7 0.0 0.41 9.8 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|352682240|ref|YP_004892764.1| - 0.00012 21.4 1.4 1 8.6 0.0 3.4 3 0 0 3 3 3 2 Zeta toxin ATPase PF06745.13 gi|352682240|ref|YP_004892764.1| - 0.00016 21.1 0.4 0.73 9.1 0.0 3.5 2 1 1 3 3 3 2 KaiC AAA_3 PF07726.11 gi|352682240|ref|YP_004892764.1| - 0.00018 21.4 0.0 0.69 9.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|352682240|ref|YP_004892764.1| - 0.00024 20.6 0.0 0.63 9.5 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region MazE_antitoxin PF04014.18 gi|352682240|ref|YP_004892764.1| - 0.00032 20.6 2.6 0.0078 16.1 0.3 3.3 3 0 0 3 3 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Bac_DnaA PF00308.18 gi|352682240|ref|YP_004892764.1| - 0.00042 20.2 0.0 0.09 12.6 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein NB-ARC PF00931.22 gi|352682240|ref|YP_004892764.1| - 0.00058 19.1 0.1 0.4 9.8 0.0 2.9 3 0 0 3 3 3 1 NB-ARC domain AAA_17 PF13207.6 gi|352682240|ref|YP_004892764.1| - 0.00063 20.2 0.0 1.5 9.2 0.0 2.8 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|352682240|ref|YP_004892764.1| - 0.00097 19.7 0.0 1.2 9.6 0.0 2.8 2 0 0 2 2 2 1 ABC transporter UFD1 PF03152.14 gi|352682240|ref|YP_004892764.1| - 0.0024 17.4 0.0 0.069 12.6 0.0 2.4 1 1 1 2 2 2 1 Ubiquitin fusion degradation protein UFD1 NTPase_1 PF03266.15 gi|352682240|ref|YP_004892764.1| - 0.0039 17.1 2.5 4.6 7.1 0.0 4.0 4 1 0 5 5 3 0 NTPase Guanylate_kin PF00625.21 gi|352682240|ref|YP_004892764.1| - 0.0053 16.5 0.2 31 4.2 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase AFG1_ATPase PF03969.16 gi|352682240|ref|YP_004892764.1| - 0.0076 15.2 0.0 3.3 6.5 0.0 2.4 2 0 0 2 2 2 1 AFG1-like ATPase DUF4119 PF13494.6 gi|352682240|ref|YP_004892764.1| - 0.0097 16.0 2.3 0.025 14.7 0.1 2.5 3 0 0 3 3 2 1 Domain of unknown function, B. Theta Gene description (DUF4119) TniB PF05621.11 gi|352682240|ref|YP_004892764.1| - 0.023 14.1 0.0 10 5.5 0.0 3.0 2 1 1 3 3 3 0 Bacterial TniB protein AAA_11 PF13086.6 gi|352682240|ref|YP_004892764.1| - 0.023 14.5 0.0 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|352682240|ref|YP_004892764.1| - 0.029 13.5 0.1 2.6 7.0 0.0 2.2 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 KAP_NTPase PF07693.14 gi|352682240|ref|YP_004892764.1| - 0.037 13.3 0.0 20 4.3 0.0 3.2 2 1 1 3 3 3 0 KAP family P-loop domain Sigma54_activ_2 PF14532.6 gi|352682240|ref|YP_004892764.1| - 0.043 13.9 0.0 12 6.0 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|352682240|ref|YP_004892764.1| - 0.052 13.9 0.7 25 5.2 0.0 3.1 2 1 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|352682240|ref|YP_004892764.1| - 0.059 13.3 0.0 11 5.9 0.0 2.5 2 1 0 2 2 2 0 Rad17 P-loop domain IPT PF01745.16 gi|352682240|ref|YP_004892764.1| - 0.065 12.6 0.2 2.9 7.2 0.1 2.5 2 0 0 2 2 2 0 Isopentenyl transferase ATP-synt_ab PF00006.25 gi|352682240|ref|YP_004892764.1| - 0.067 12.8 0.0 15 5.2 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.16 gi|352682240|ref|YP_004892764.1| - 0.079 12.4 0.5 9.3 5.6 0.0 2.9 3 0 0 3 3 2 0 PhoH-like protein SKI PF01202.22 gi|352682240|ref|YP_004892764.1| - 0.079 13.1 0.5 15 5.6 0.0 3.0 4 0 0 4 4 2 0 Shikimate kinase Viral_helicase1 PF01443.18 gi|352682240|ref|YP_004892764.1| - 0.086 12.6 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|352682240|ref|YP_004892764.1| - 0.086 12.5 0.1 13 5.4 0.0 2.7 2 0 0 2 2 2 0 AAA domain DUF1905 PF08922.11 gi|352682240|ref|YP_004892764.1| - 0.12 12.5 0.8 24 5.1 0.0 3.0 3 0 0 3 3 2 0 Domain of unknown function (DUF1905) ArsA_HSP20 PF17886.1 gi|352682241|ref|YP_004892765.1| - 1.5e-12 46.9 0.1 2.1e-12 46.4 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|352682241|ref|YP_004892765.1| - 3.8e-11 43.0 0.7 1.2e-09 38.3 0.7 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|352682241|ref|YP_004892765.1| - 0.0088 16.1 0.0 0.0088 16.1 0.0 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.16 gi|352682241|ref|YP_004892765.1| - 0.015 16.3 0.1 0.026 15.6 0.1 1.3 1 0 0 1 1 1 0 CS domain Peptidase_M42 PF05343.14 gi|352682242|ref|YP_004892766.1| - 4.1e-66 223.0 0.0 4.9e-66 222.7 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|352682242|ref|YP_004892766.1| - 3.2e-09 36.8 0.1 1.1e-08 35.0 0.0 1.9 1 1 1 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|352682242|ref|YP_004892766.1| - 9.5e-05 22.2 0.0 0.0018 18.0 0.0 2.3 2 1 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.15 gi|352682242|ref|YP_004892766.1| - 0.00045 19.1 0.0 0.0072 15.2 0.0 2.1 2 0 0 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Fe_dep_repress PF01325.19 gi|352682242|ref|YP_004892766.1| - 0.13 12.4 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PNP_UDP_1 PF01048.20 gi|352682243|ref|YP_004892767.1| - 6.3e-36 123.8 0.4 7.6e-36 123.5 0.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily OrfB_Zn_ribbon PF07282.11 gi|352682244|ref|YP_004892768.1| - 0.012 15.5 0.3 0.22 11.5 0.4 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HJURP_C PF12347.8 gi|352682244|ref|YP_004892768.1| - 0.032 14.3 0.0 0.043 13.9 0.0 1.2 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat Lys_export PF03956.13 gi|352682245|ref|YP_004892769.1| - 7.6e-42 143.0 8.7 7.6e-42 143.0 8.7 2.1 2 0 0 2 2 2 1 Lysine exporter LysO Flavoprotein PF02441.19 gi|352682246|ref|YP_004892770.1| - 1.6e-27 96.2 0.0 2e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein RHH_1 PF01402.21 gi|352682247|ref|YP_004892771.1| - 5.9e-09 35.6 0.7 1.3e-08 34.4 0.1 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family VapB_antitoxin PF09957.9 gi|352682247|ref|YP_004892771.1| - 0.02 14.8 0.2 0.03 14.2 0.2 1.4 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB DUF3912 PF13051.6 gi|352682247|ref|YP_004892771.1| - 0.023 15.0 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3912) BLI1 PF17324.2 gi|352682247|ref|YP_004892771.1| - 0.031 15.0 0.0 0.033 14.8 0.0 1.0 1 0 0 1 1 1 0 BLOC-1 interactor 1 DUF5388 PF17363.2 gi|352682247|ref|YP_004892771.1| - 0.037 14.2 0.0 0.044 14.0 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5388) UvrB_inter PF17757.1 gi|352682247|ref|YP_004892771.1| - 0.061 13.5 0.1 0.082 13.1 0.1 1.2 1 1 0 1 1 1 0 UvrB interaction domain SIS PF01380.22 gi|352682248|ref|YP_004892772.1| - 4.4e-14 52.5 0.0 8.2e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|352682248|ref|YP_004892772.1| - 1.7e-13 50.7 2.1 6.9e-08 32.6 1.3 2.3 1 1 1 2 2 2 2 SIS domain LigB PF02900.18 gi|352682248|ref|YP_004892772.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase PRMT5 PF05185.16 gi|352682248|ref|YP_004892772.1| - 0.2 11.5 2.0 8.4 6.2 0.1 2.4 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase AdoMet_dc PF02675.15 gi|352682249|ref|YP_004892773.1| - 7.3e-37 125.9 0.0 8.2e-37 125.7 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase OrfB_Zn_ribbon PF07282.11 gi|352682251|ref|YP_004892775.1| - 6.6e-11 42.0 0.0 1.3e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|352682251|ref|YP_004892775.1| - 0.00038 20.6 4.2 0.00073 19.6 4.2 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.6 gi|352682251|ref|YP_004892775.1| - 0.0018 18.1 0.7 0.0031 17.4 0.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DUF1272 PF06906.11 gi|352682251|ref|YP_004892775.1| - 0.0047 17.0 0.6 0.06 13.5 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1272) zf-TFIIB PF13453.6 gi|352682251|ref|YP_004892775.1| - 0.01 15.1 0.2 4.7 6.6 0.0 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger DZR PF12773.7 gi|352682251|ref|YP_004892775.1| - 0.037 14.1 0.4 0.065 13.3 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon RPA_interact_C PF14768.6 gi|352682251|ref|YP_004892775.1| - 0.04 14.5 0.1 0.069 13.7 0.1 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DUF1667 PF07892.11 gi|352682251|ref|YP_004892775.1| - 0.061 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1667) zinc-ribbons_6 PF07191.12 gi|352682251|ref|YP_004892775.1| - 0.064 13.2 0.3 0.1 12.6 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons PHD PF00628.29 gi|352682251|ref|YP_004892775.1| - 0.083 12.8 0.5 0.13 12.2 0.5 1.3 1 0 0 1 1 1 0 PHD-finger Ins134_P3_kin PF05770.11 gi|352682251|ref|YP_004892775.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain zf-ribbon_3 PF13248.6 gi|352682251|ref|YP_004892775.1| - 0.15 11.5 1.4 5 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|352682251|ref|YP_004892775.1| - 0.19 11.9 4.1 1.5 9.0 0.1 2.7 2 1 1 3 3 3 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|352682251|ref|YP_004892775.1| - 0.23 11.3 2.0 6.6 6.6 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger ATPase PF06745.13 gi|352682252|ref|YP_004892776.1| - 2.3e-14 53.3 0.0 3.1e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|352682252|ref|YP_004892776.1| - 5.2e-07 29.4 1.3 1.8e-05 24.4 0.2 2.5 2 1 0 2 2 2 1 AAA domain Elong_Iki1 PF10483.9 gi|352682252|ref|YP_004892776.1| - 4.4e-06 26.4 0.0 5.3e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 Elongator subunit Iki1 DnaB_C PF03796.15 gi|352682252|ref|YP_004892776.1| - 0.005 16.2 0.0 0.028 13.7 0.0 2.0 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain TsaE PF02367.17 gi|352682252|ref|YP_004892776.1| - 0.012 15.7 0.0 0.043 13.8 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|352682252|ref|YP_004892776.1| - 0.02 14.6 0.1 0.11 12.3 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Ago_N_1 PF18351.1 gi|352682252|ref|YP_004892776.1| - 0.034 14.5 0.1 0.072 13.5 0.1 1.6 1 0 0 1 1 1 0 Fungal Argonaute N-terminal domain AAA PF00004.29 gi|352682252|ref|YP_004892776.1| - 0.065 13.7 0.0 0.15 12.4 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|352682252|ref|YP_004892776.1| - 0.14 12.7 0.1 0.61 10.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|352682252|ref|YP_004892776.1| - 0.14 11.8 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Radical_SAM PF04055.21 gi|352682253|ref|YP_004892777.1| - 8.1e-14 52.3 0.0 6.8e-13 49.3 0.0 2.1 2 1 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.11 gi|352682253|ref|YP_004892777.1| - 1.9e-08 34.4 0.8 0.001 18.9 0.0 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) DUF2249 PF10006.9 gi|352682253|ref|YP_004892777.1| - 0.027 14.3 0.0 2.1 8.3 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2249) Acetyltransf_6 PF13480.7 gi|352682253|ref|YP_004892777.1| - 0.066 13.4 0.9 1.5 9.0 0.0 2.4 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain SNARE_assoc PF09335.11 gi|352682255|ref|YP_004892779.1| - 3.5e-06 27.5 1.6 2.3e-05 24.9 0.1 2.3 1 1 1 2 2 2 1 SNARE associated Golgi protein tRNA-synt_1 PF00133.22 gi|352682256|ref|YP_004892780.1| - 3.2e-60 204.1 0.0 4.3e-50 170.6 0.0 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|352682256|ref|YP_004892780.1| - 4.7e-27 94.7 0.1 5.3e-12 45.2 0.4 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|352682256|ref|YP_004892780.1| - 8.7e-16 58.2 0.4 2.1e-15 57.0 0.4 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|352682256|ref|YP_004892780.1| - 6e-12 45.4 0.0 1.9e-11 43.8 0.0 1.7 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|352682256|ref|YP_004892780.1| - 9.3e-12 44.9 0.0 3.1e-06 26.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|352682256|ref|YP_004892780.1| - 0.12 11.3 0.0 9.7 5.0 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) TatC PF00902.18 gi|352682257|ref|YP_004892781.1| - 4.8e-38 131.1 22.8 6.2e-38 130.7 22.8 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) ABC2_membrane PF01061.24 gi|352682259|ref|YP_004892783.1| - 1.4e-31 109.6 18.1 1.4e-31 109.6 18.1 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|352682259|ref|YP_004892783.1| - 2.6e-11 43.2 12.9 2.6e-11 43.2 12.9 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|352682259|ref|YP_004892783.1| - 0.00032 20.7 4.3 0.00059 19.8 4.1 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|352682259|ref|YP_004892783.1| - 0.0013 18.1 14.4 0.0056 16.0 14.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|352682260|ref|YP_004892784.1| - 1.6e-29 103.2 0.0 2.1e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352682260|ref|YP_004892784.1| - 1.6e-13 51.1 0.5 2.4e-07 30.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|352682260|ref|YP_004892784.1| - 2.5e-10 40.9 0.0 5.1e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|352682260|ref|YP_004892784.1| - 0.016 15.7 0.0 0.024 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|352682260|ref|YP_004892784.1| - 0.031 14.7 0.6 0.4 11.1 0.6 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|352682260|ref|YP_004892784.1| - 0.046 13.3 0.0 0.079 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|352682260|ref|YP_004892784.1| - 0.072 12.5 0.0 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|352682260|ref|YP_004892784.1| - 0.077 12.7 0.0 8.9 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|352682260|ref|YP_004892784.1| - 0.14 11.9 0.3 0.28 11.0 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|352682260|ref|YP_004892784.1| - 0.17 12.1 0.2 0.85 9.9 0.2 2.1 1 1 0 1 1 1 0 AAA domain Cation_efflux PF01545.21 gi|352682261|ref|YP_004892785.1| - 9.2e-25 87.5 10.5 1.1e-24 87.3 10.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|352682261|ref|YP_004892785.1| - 3.5e-18 65.5 0.2 5.9e-18 64.8 0.2 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter MFS_1 PF07690.16 gi|352682263|ref|YP_004892787.1| - 1.8e-33 115.9 63.1 1.7e-20 73.3 29.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|352682263|ref|YP_004892787.1| - 0.0024 16.5 28.8 0.0085 14.7 28.8 2.1 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1_like PF12832.7 gi|352682263|ref|YP_004892787.1| - 0.0047 15.8 12.1 0.24 10.2 11.7 3.4 1 1 0 1 1 1 1 MFS_1 like family Class_IIIsignal PF04021.12 gi|352682264|ref|YP_004892788.1| - 0.00088 19.2 6.3 0.0022 17.9 6.3 1.7 1 0 0 1 1 1 1 Class III signal peptide DUF4330 PF14221.6 gi|352682264|ref|YP_004892788.1| - 0.2 11.9 3.2 2.9 8.1 2.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4330) DUF4307 PF14155.6 gi|352682264|ref|YP_004892788.1| - 2.1 8.2 5.3 2 8.3 2.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) ATPase PF06745.13 gi|352682265|ref|YP_004892789.1| - 4e-14 52.5 0.0 5e-12 45.7 0.0 2.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|352682265|ref|YP_004892789.1| - 5.1e-06 26.2 0.0 3e-05 23.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|352682265|ref|YP_004892789.1| - 7.4e-06 25.8 0.3 0.00021 21.1 0.1 2.5 2 1 1 3 3 3 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|352682265|ref|YP_004892789.1| - 1.3e-05 25.5 0.2 0.0032 17.7 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|352682265|ref|YP_004892789.1| - 1.6e-05 25.4 0.0 0.0004 20.8 0.0 2.5 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) CobA_CobO_BtuR PF02572.15 gi|352682265|ref|YP_004892789.1| - 0.00015 22.1 0.0 0.00083 19.7 0.0 2.2 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NACHT PF05729.12 gi|352682265|ref|YP_004892789.1| - 0.00017 21.5 0.0 0.00038 20.4 0.0 1.6 1 1 0 1 1 1 1 NACHT domain NB-ARC PF00931.22 gi|352682265|ref|YP_004892789.1| - 0.00079 18.7 0.0 0.0041 16.3 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_22 PF13401.6 gi|352682265|ref|YP_004892789.1| - 0.0011 19.3 0.1 0.0033 17.7 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|352682265|ref|YP_004892789.1| - 0.0015 18.9 0.1 0.0054 17.1 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|352682265|ref|YP_004892789.1| - 0.0043 16.8 0.0 0.0093 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|352682265|ref|YP_004892789.1| - 0.0043 16.8 0.1 0.015 15.0 0.1 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|352682265|ref|YP_004892789.1| - 0.01 15.6 0.2 0.51 10.1 0.0 2.9 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain AAA_19 PF13245.6 gi|352682265|ref|YP_004892789.1| - 0.015 15.7 0.3 0.02 15.2 0.3 1.4 1 1 0 1 1 1 0 AAA domain GvpD PF07088.11 gi|352682265|ref|YP_004892789.1| - 0.028 13.0 0.0 0.46 9.0 0.0 2.1 2 0 0 2 2 2 0 GvpD gas vesicle protein DUF2075 PF09848.9 gi|352682265|ref|YP_004892789.1| - 0.033 13.4 0.0 0.044 13.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|352682265|ref|YP_004892789.1| - 0.033 14.2 0.0 0.14 12.2 0.0 2.0 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|352682265|ref|YP_004892789.1| - 0.039 13.6 0.5 0.18 11.4 0.0 2.2 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|352682265|ref|YP_004892789.1| - 0.04 13.4 0.1 0.07 12.6 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein DnaB_C PF03796.15 gi|352682265|ref|YP_004892789.1| - 0.043 13.1 0.0 0.075 12.3 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ABC_tran PF00005.27 gi|352682265|ref|YP_004892789.1| - 0.054 14.0 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter ATPase_2 PF01637.18 gi|352682265|ref|YP_004892789.1| - 0.067 13.1 0.0 0.33 10.8 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea CbiA PF01656.23 gi|352682265|ref|YP_004892789.1| - 0.077 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.22 gi|352682265|ref|YP_004892789.1| - 0.14 12.6 0.0 0.24 11.8 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|352682265|ref|YP_004892789.1| - 0.16 12.1 0.1 0.33 11.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|352682265|ref|YP_004892789.1| - 0.22 12.0 0.4 0.56 10.6 0.4 1.7 2 0 0 2 2 1 0 AAA domain UPF0020 PF01170.18 gi|352682266|ref|YP_004892790.1| - 4.9e-21 75.3 0.0 6e-20 71.8 0.0 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|352682266|ref|YP_004892790.1| - 1.6e-10 41.3 0.0 2.6e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|352682266|ref|YP_004892790.1| - 8.6e-09 35.2 0.0 1.3e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|352682266|ref|YP_004892790.1| - 2.2e-05 25.1 0.0 4.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|352682266|ref|YP_004892790.1| - 0.00019 21.2 0.0 0.00065 19.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|352682266|ref|YP_004892790.1| - 0.00029 20.2 0.0 0.00042 19.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.15 gi|352682266|ref|YP_004892790.1| - 0.0022 17.7 0.0 0.0034 17.1 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Ubie_methyltran PF01209.18 gi|352682266|ref|YP_004892790.1| - 0.026 13.9 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.10 gi|352682266|ref|YP_004892790.1| - 0.039 13.5 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF2835 PF11197.8 gi|352682266|ref|YP_004892790.1| - 0.054 13.3 0.0 0.48 10.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2835) Methyltransf_23 PF13489.6 gi|352682266|ref|YP_004892790.1| - 0.085 12.7 0.0 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Prok_Ub PF14454.6 gi|352682266|ref|YP_004892790.1| - 0.093 12.4 0.0 5.1 6.8 0.0 2.3 2 0 0 2 2 2 0 Prokaryotic Ubiquitin PrmA PF06325.13 gi|352682266|ref|YP_004892790.1| - 0.099 12.0 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|352682266|ref|YP_004892790.1| - 0.1 13.2 0.1 0.34 11.6 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain DUF401 PF04165.12 gi|352682267|ref|YP_004892791.1| - 4.8e-48 164.4 15.4 5.9e-48 164.1 15.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) T2SSE PF00437.20 gi|352682268|ref|YP_004892792.1| - 7.9e-14 51.4 0.1 1.3e-13 50.7 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|352682268|ref|YP_004892792.1| - 2.2e-05 25.0 0.0 7.1e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352682268|ref|YP_004892792.1| - 0.00017 22.0 0.0 0.00041 20.8 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|352682268|ref|YP_004892792.1| - 0.00039 20.6 0.0 0.041 14.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|352682268|ref|YP_004892792.1| - 0.0015 18.5 0.0 0.0028 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|352682268|ref|YP_004892792.1| - 0.0016 18.2 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA PF00004.29 gi|352682268|ref|YP_004892792.1| - 0.0019 18.6 0.0 0.0038 17.6 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|352682268|ref|YP_004892792.1| - 0.0023 18.2 0.0 0.0099 16.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|352682268|ref|YP_004892792.1| - 0.0029 17.9 0.0 0.0068 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|352682268|ref|YP_004892792.1| - 0.0033 17.3 0.0 0.0069 16.2 0.0 1.5 2 0 0 2 2 1 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|352682268|ref|YP_004892792.1| - 0.0037 17.0 0.0 0.0083 15.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|352682268|ref|YP_004892792.1| - 0.0043 16.8 0.0 0.012 15.4 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|352682268|ref|YP_004892792.1| - 0.0064 16.5 0.0 0.016 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|352682268|ref|YP_004892792.1| - 0.0077 16.2 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|352682268|ref|YP_004892792.1| - 0.01 15.8 0.0 0.047 13.6 0.0 2.0 2 0 0 2 2 2 0 NTPase Thymidylate_kin PF02223.17 gi|352682268|ref|YP_004892792.1| - 0.011 15.4 0.0 0.029 14.0 0.0 1.6 1 1 0 1 1 1 0 Thymidylate kinase AAA_25 PF13481.6 gi|352682268|ref|YP_004892792.1| - 0.015 14.9 0.4 0.061 12.9 0.3 2.2 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|352682268|ref|YP_004892792.1| - 0.016 15.7 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter DnaB_C PF03796.15 gi|352682268|ref|YP_004892792.1| - 0.035 13.5 0.0 0.074 12.4 0.0 1.6 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_24 PF13479.6 gi|352682268|ref|YP_004892792.1| - 0.038 13.7 0.0 0.11 12.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|352682268|ref|YP_004892792.1| - 0.042 13.3 0.0 0.87 9.0 0.0 2.4 1 1 1 2 2 2 0 PhoH-like protein KTI12 PF08433.10 gi|352682268|ref|YP_004892792.1| - 0.045 13.2 0.0 0.23 10.9 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|352682268|ref|YP_004892792.1| - 0.051 14.0 0.0 0.12 12.7 0.0 1.7 2 0 0 2 2 1 0 RNA helicase E3_binding PF02817.17 gi|352682268|ref|YP_004892792.1| - 0.057 13.8 2.3 9.3 6.7 0.1 3.0 3 0 0 3 3 2 0 e3 binding domain Viral_helicase1 PF01443.18 gi|352682268|ref|YP_004892792.1| - 0.061 13.1 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|352682268|ref|YP_004892792.1| - 0.066 13.1 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|352682268|ref|YP_004892792.1| - 0.066 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 KaiC PrpR_N PF06506.11 gi|352682268|ref|YP_004892792.1| - 0.068 12.7 0.0 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 Propionate catabolism activator SRP54 PF00448.22 gi|352682268|ref|YP_004892792.1| - 0.076 12.6 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|352682268|ref|YP_004892792.1| - 0.08 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|352682268|ref|YP_004892792.1| - 0.081 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activ_2 PF14532.6 gi|352682268|ref|YP_004892792.1| - 0.092 12.9 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain PIN_9 PF18477.1 gi|352682268|ref|YP_004892792.1| - 0.11 12.8 0.0 0.57 10.5 0.0 2.3 1 1 0 1 1 1 0 PIN like domain Zeta_toxin PF06414.12 gi|352682268|ref|YP_004892792.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 gi|352682268|ref|YP_004892792.1| - 0.13 11.6 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.6 gi|352682268|ref|YP_004892792.1| - 0.14 12.6 0.0 0.38 11.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|352682268|ref|YP_004892792.1| - 0.19 12.2 0.0 0.35 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|352682268|ref|YP_004892792.1| - 0.24 11.1 0.0 0.38 10.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|352682269|ref|YP_004892793.1| - 8.8e-71 237.9 0.0 1e-70 237.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|352682269|ref|YP_004892793.1| - 0.00026 20.6 0.0 0.00046 19.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|352682269|ref|YP_004892793.1| - 0.0011 17.6 0.1 0.31 9.6 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein DnaB_C PF03796.15 gi|352682269|ref|YP_004892793.1| - 0.0013 18.1 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain Rad51 PF08423.11 gi|352682269|ref|YP_004892793.1| - 0.0016 17.8 0.0 0.0031 16.8 0.0 1.4 1 0 0 1 1 1 1 Rad51 AAA_24 PF13479.6 gi|352682269|ref|YP_004892793.1| - 0.034 13.9 0.0 0.43 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|352682270|ref|YP_004892794.1| - 1.6e-13 50.6 0.2 1.8e-11 43.8 0.0 2.8 2 1 0 2 2 2 1 KaiC AAA PF00004.29 gi|352682270|ref|YP_004892794.1| - 1.5e-06 28.6 0.0 3e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|352682270|ref|YP_004892794.1| - 2.4e-05 24.0 0.3 0.08 12.5 0.1 2.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|352682270|ref|YP_004892794.1| - 3e-05 24.5 0.0 5.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|352682270|ref|YP_004892794.1| - 6.4e-05 23.2 0.0 0.00022 21.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|352682270|ref|YP_004892794.1| - 0.00025 21.1 0.0 0.00074 19.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|352682270|ref|YP_004892794.1| - 0.00026 21.4 0.0 0.00063 20.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|352682270|ref|YP_004892794.1| - 0.00049 18.8 0.0 0.012 14.3 0.0 2.1 2 0 0 2 2 2 1 GvpD gas vesicle protein NACHT PF05729.12 gi|352682270|ref|YP_004892794.1| - 0.00063 19.7 0.0 0.0022 17.9 0.0 1.9 1 1 0 1 1 1 1 NACHT domain AAA_11 PF13086.6 gi|352682270|ref|YP_004892794.1| - 0.0062 16.3 0.0 0.0087 15.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352682270|ref|YP_004892794.1| - 0.027 15.0 0.0 0.097 13.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|352682270|ref|YP_004892794.1| - 0.028 13.6 0.0 0.05 12.8 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|352682270|ref|YP_004892794.1| - 0.031 14.0 0.2 0.17 11.6 0.0 2.2 3 0 0 3 3 3 0 IstB-like ATP binding protein ResIII PF04851.15 gi|352682270|ref|YP_004892794.1| - 0.052 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_23 PF13476.6 gi|352682270|ref|YP_004892794.1| - 0.055 14.0 0.1 0.11 13.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|352682270|ref|YP_004892794.1| - 0.056 13.2 0.0 0.12 12.1 0.0 1.7 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|352682270|ref|YP_004892794.1| - 0.059 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|352682270|ref|YP_004892794.1| - 0.075 12.9 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|352682270|ref|YP_004892794.1| - 0.084 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|352682270|ref|YP_004892794.1| - 0.091 13.2 0.0 0.24 11.8 0.0 1.7 2 0 0 2 2 1 0 RNA helicase PhoH PF02562.16 gi|352682270|ref|YP_004892794.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|352682270|ref|YP_004892794.1| - 0.15 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|352682270|ref|YP_004892794.1| - 0.19 10.9 0.0 0.53 9.4 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain Hydin_ADK PF17213.3 gi|352682270|ref|YP_004892794.1| - 0.24 11.7 0.0 0.44 10.8 0.0 1.3 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain Methyltransf_11 PF08241.12 gi|352682271|ref|YP_004892795.1| - 4.2e-15 56.2 0.0 2.2e-14 53.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352682271|ref|YP_004892795.1| - 6.9e-13 49.1 0.0 1.6e-12 47.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352682271|ref|YP_004892795.1| - 4.8e-12 46.0 0.0 6.3e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352682271|ref|YP_004892795.1| - 4.6e-09 36.9 0.0 1.2e-08 35.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|352682271|ref|YP_004892795.1| - 0.00068 19.3 0.0 0.00087 18.9 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|352682271|ref|YP_004892795.1| - 0.0011 18.3 0.0 0.0017 17.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|352682271|ref|YP_004892795.1| - 0.0014 18.4 0.0 0.0025 17.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|352682271|ref|YP_004892795.1| - 0.069 12.4 0.0 0.094 12.0 0.0 1.3 1 1 0 1 1 1 0 Mycolic acid cyclopropane synthetase Acylphosphatase PF00708.18 gi|352682272|ref|YP_004892796.1| - 8.7e-23 80.5 0.0 9.8e-23 80.4 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase ABC_tran PF00005.27 gi|352682273|ref|YP_004892797.1| - 1.6e-32 112.9 0.0 2.4e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|352682273|ref|YP_004892797.1| - 8.9e-13 48.9 0.1 2.8e-12 47.3 0.1 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|352682273|ref|YP_004892797.1| - 1.2e-08 35.1 0.0 4.1e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|352682273|ref|YP_004892797.1| - 1.1e-05 25.9 0.0 4e-05 24.1 0.0 2.1 1 0 0 1 1 1 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|352682273|ref|YP_004892797.1| - 0.00034 20.7 0.5 0.0009 19.4 0.5 1.8 1 0 0 1 1 1 1 TOBE domain S1 PF00575.23 gi|352682273|ref|YP_004892797.1| - 0.0018 18.6 0.5 0.013 15.8 0.1 2.5 2 0 0 2 2 2 1 S1 RNA binding domain SbcCD_C PF13558.6 gi|352682273|ref|YP_004892797.1| - 0.0049 17.1 0.1 0.035 14.3 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|352682273|ref|YP_004892797.1| - 0.042 13.8 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|352682273|ref|YP_004892797.1| - 0.099 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|352682273|ref|YP_004892797.1| - 0.16 12.5 0.0 0.28 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|352682273|ref|YP_004892797.1| - 0.16 10.8 0.0 15 4.2 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|352682273|ref|YP_004892797.1| - 0.18 12.0 0.0 0.8 10.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|352682273|ref|YP_004892797.1| - 0.21 11.8 0.6 1.6 8.9 0.7 2.3 2 1 0 2 2 1 0 AAA domain Thioredoxin_2 PF13098.6 gi|352682274|ref|YP_004892798.1| - 3.8e-05 24.1 0.0 0.00035 21.0 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|352682274|ref|YP_004892798.1| - 0.0011 19.2 0.0 0.0028 17.9 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|352682274|ref|YP_004892798.1| - 0.0011 18.8 1.2 0.17 11.7 0.3 2.4 1 1 2 3 3 3 2 DSBA-like thioredoxin domain Thioredoxin PF00085.20 gi|352682274|ref|YP_004892798.1| - 0.041 13.9 0.0 5.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Thioredoxin NurA PF09376.10 gi|352682274|ref|YP_004892798.1| - 0.066 12.9 0.1 0.097 12.3 0.1 1.2 1 0 0 1 1 1 0 NurA domain Pyr_redox_2 PF07992.14 gi|352682275|ref|YP_004892799.1| - 2.3e-08 33.6 0.0 3.3e-07 29.8 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|352682275|ref|YP_004892799.1| - 0.00075 19.2 0.1 0.0033 17.1 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|352682275|ref|YP_004892799.1| - 0.0009 19.4 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|352682275|ref|YP_004892799.1| - 0.00095 18.3 0.0 0.0015 17.6 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|352682275|ref|YP_004892799.1| - 0.0011 19.0 2.5 0.007 16.4 0.2 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|352682275|ref|YP_004892799.1| - 0.011 14.9 0.2 0.014 14.5 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|352682275|ref|YP_004892799.1| - 0.013 16.1 0.1 0.034 14.7 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|352682275|ref|YP_004892799.1| - 0.038 12.7 0.0 0.061 12.0 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein ApbA PF02558.16 gi|352682275|ref|YP_004892799.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.6 gi|352682275|ref|YP_004892799.1| - 0.46 9.7 1.1 4.8 6.3 0.2 2.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FtsX PF02687.21 gi|352682276|ref|YP_004892800.1| - 3.9e-10 40.1 3.4 3.9e-10 40.1 3.4 3.0 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|352682276|ref|YP_004892800.1| - 2.5e-06 28.0 6.6 2.5e-06 28.0 6.6 2.4 2 1 0 2 2 2 1 MacB-like periplasmic core domain DUF2273 PF10031.9 gi|352682276|ref|YP_004892800.1| - 2.5 8.2 8.3 0.14 12.2 0.7 2.8 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) FAD_binding_3 PF01494.19 gi|352682277|ref|YP_004892801.1| - 2.1e-15 56.9 0.1 1.3e-11 44.4 0.1 3.0 2 1 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|352682277|ref|YP_004892801.1| - 9.3e-07 28.5 0.1 1.3e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|352682277|ref|YP_004892801.1| - 1.9e-05 23.9 0.2 0.002 17.3 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|352682277|ref|YP_004892801.1| - 2.9e-05 23.4 0.1 4.3e-05 22.9 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|352682277|ref|YP_004892801.1| - 3.8e-05 22.9 0.1 7.7e-05 21.9 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|352682277|ref|YP_004892801.1| - 0.0002 20.7 0.2 0.00034 20.0 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|352682277|ref|YP_004892801.1| - 0.00051 18.8 0.1 0.00051 18.8 0.1 1.5 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|352682277|ref|YP_004892801.1| - 0.0013 18.9 0.0 0.0038 17.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|352682277|ref|YP_004892801.1| - 0.0025 16.9 0.2 0.0025 16.9 0.2 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|352682277|ref|YP_004892801.1| - 0.0029 18.1 0.0 0.0072 16.9 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|352682277|ref|YP_004892801.1| - 0.0043 16.0 0.0 0.18 10.6 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase DAO PF01266.24 gi|352682277|ref|YP_004892801.1| - 0.0048 16.5 3.0 0.0063 16.1 0.2 2.1 1 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|352682277|ref|YP_004892801.1| - 0.065 12.5 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|352682277|ref|YP_004892801.1| - 0.086 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GHMP_kinases_N PF00288.26 gi|352682278|ref|YP_004892802.1| - 7.6e-06 26.1 1.4 1.4e-05 25.2 1.4 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain Tir_receptor_C PF07489.11 gi|352682278|ref|YP_004892802.1| - 0.22 11.5 0.6 0.31 11.0 0.6 1.2 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus PPS_PS PF02006.16 gi|352682279|ref|YP_004892803.1| - 1.8e-76 255.6 0.8 2.2e-76 255.3 0.8 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase ApbA_C PF08546.11 gi|352682280|ref|YP_004892804.1| - 7.9e-37 126.2 0.0 1.1e-36 125.8 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|352682280|ref|YP_004892804.1| - 5.9e-15 55.2 0.5 2.4e-14 53.2 0.3 2.1 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|352682280|ref|YP_004892804.1| - 0.0053 17.3 0.0 0.011 16.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|352682280|ref|YP_004892804.1| - 0.14 12.3 0.0 0.22 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NicO PF03824.16 gi|352682281|ref|YP_004892805.1| - 5e-91 305.0 11.3 5e-91 305.0 11.3 1.5 2 0 0 2 2 2 1 High-affinity nickel-transport protein UPF0114 PF03350.16 gi|352682281|ref|YP_004892805.1| - 5.8 7.2 10.9 0.084 13.1 1.0 2.7 3 0 0 3 3 3 0 Uncharacterized protein family, UPF0114 TraC_F_IV PF11130.8 gi|352682282|ref|YP_004892806.1| - 0.058 13.0 0.1 0.084 12.5 0.1 1.3 1 0 0 1 1 1 0 F pilus assembly Type-IV secretion system for plasmid transfer CbiG_N PF11760.8 gi|352682283|ref|YP_004892807.1| - 5.9e-30 103.1 0.0 1.6e-29 101.7 0.0 1.8 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|352682283|ref|YP_004892807.1| - 1.9e-17 63.9 0.4 1.9e-17 63.9 0.4 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus TP_methylase PF00590.20 gi|352682284|ref|YP_004892808.1| - 5.2e-34 118.0 0.0 6.5e-34 117.7 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Amidohydro_2 PF04909.14 gi|352682284|ref|YP_004892808.1| - 0.016 15.0 0.0 0.077 12.8 0.0 1.8 1 1 0 1 1 1 0 Amidohydrolase Pantoate_transf PF02548.15 gi|352682285|ref|YP_004892809.1| - 1.5e-108 362.1 0.3 1.8e-108 361.9 0.3 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|352682285|ref|YP_004892809.1| - 2.7e-06 27.0 3.7 4.7e-05 23.0 3.7 2.3 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase peroxidase PF00141.23 gi|352682285|ref|YP_004892809.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Peroxidase Robl_LC7 PF03259.17 gi|352682285|ref|YP_004892809.1| - 0.029 14.1 0.2 0.17 11.7 0.2 2.1 2 0 0 2 2 2 0 Roadblock/LC7 domain CbiC PF02570.15 gi|352682286|ref|YP_004892810.1| - 1.9e-36 125.6 0.3 3.4e-36 124.7 0.3 1.4 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiX PF01903.17 gi|352682286|ref|YP_004892810.1| - 4.1e-18 65.7 0.0 1.4e-17 63.9 0.0 1.9 2 0 0 2 2 2 1 CbiX PTS_IIB PF02302.17 gi|352682286|ref|YP_004892810.1| - 0.14 12.9 0.0 0.3 11.8 0.0 1.6 1 0 0 1 1 1 0 PTS system, Lactose/Cellobiose specific IIB subunit TP_methylase PF00590.20 gi|352682287|ref|YP_004892811.1| - 1.3e-31 110.2 0.8 1.5e-31 110.0 0.8 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|352682288|ref|YP_004892812.1| - 7.7e-68 228.5 2.4 1.8e-67 227.3 1.0 1.9 2 0 0 2 2 2 1 CbiD Methyltransf_31 PF13847.6 gi|352682289|ref|YP_004892813.1| - 8.1e-11 41.9 0.0 1.1e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352682289|ref|YP_004892813.1| - 5e-10 40.0 0.1 8.5e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|352682289|ref|YP_004892813.1| - 1.4e-09 38.0 0.2 1.8e-09 37.6 0.2 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|352682289|ref|YP_004892813.1| - 2e-08 34.0 0.2 2.4e-08 33.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|352682289|ref|YP_004892813.1| - 9.9e-08 31.7 0.0 1.5e-07 31.2 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.17 gi|352682289|ref|YP_004892813.1| - 1.8e-06 27.3 0.0 2.2e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.12 gi|352682289|ref|YP_004892813.1| - 3.1e-06 27.7 0.1 6.4e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|352682289|ref|YP_004892813.1| - 3.8e-06 26.6 0.3 1.7e-05 24.4 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.15 gi|352682289|ref|YP_004892813.1| - 3.8e-06 26.7 0.0 4.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 CMAS PF02353.20 gi|352682289|ref|YP_004892813.1| - 1e-05 25.0 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|352682289|ref|YP_004892813.1| - 1.2e-05 26.3 0.0 2.1e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|352682289|ref|YP_004892813.1| - 1.2e-05 25.3 0.0 1.6e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|352682289|ref|YP_004892813.1| - 1.8e-05 24.6 0.0 2.2e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.18 gi|352682289|ref|YP_004892813.1| - 3.2e-05 23.7 0.2 0.00037 20.2 0.1 2.2 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|352682289|ref|YP_004892813.1| - 3.8e-05 24.4 0.0 7e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|352682289|ref|YP_004892813.1| - 9.8e-05 22.3 0.9 0.00014 21.8 0.9 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Methyltransf_23 PF13489.6 gi|352682289|ref|YP_004892813.1| - 0.00018 21.4 0.0 0.00027 20.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|352682289|ref|YP_004892813.1| - 0.00024 20.9 0.0 0.0012 18.6 0.0 1.8 2 0 0 2 2 2 1 DNA methylase Ubie_methyltran PF01209.18 gi|352682289|ref|YP_004892813.1| - 0.004 16.5 0.0 0.0049 16.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|352682289|ref|YP_004892813.1| - 0.0082 15.6 0.0 0.0084 15.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|352682289|ref|YP_004892813.1| - 0.019 15.0 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Pterin_bind PF00809.22 gi|352682289|ref|YP_004892813.1| - 0.02 14.5 0.0 2.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Pterin binding enzyme FtsJ PF01728.19 gi|352682289|ref|YP_004892813.1| - 0.035 14.2 0.1 9.6 6.3 0.0 2.1 2 0 0 2 2 2 0 FtsJ-like methyltransferase NodS PF05401.11 gi|352682289|ref|YP_004892813.1| - 0.049 13.2 0.0 0.07 12.7 0.0 1.4 1 1 0 1 1 1 0 Nodulation protein S (NodS) Methyltr_RsmB-F PF01189.17 gi|352682289|ref|YP_004892813.1| - 0.075 12.7 0.0 2.5 7.7 0.0 2.0 2 0 0 2 2 2 0 16S rRNA methyltransferase RsmB/F DegV PF02645.16 gi|352682289|ref|YP_004892813.1| - 0.11 11.8 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein, DegV family COG1307 TRM PF02005.16 gi|352682289|ref|YP_004892813.1| - 0.14 11.3 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase TP_methylase PF00590.20 gi|352682290|ref|YP_004892814.1| - 2.8e-30 105.9 0.8 4e-30 105.4 0.8 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Peptidase_M15 PF01427.17 gi|352682290|ref|YP_004892814.1| - 0.0058 16.4 0.0 0.0085 15.9 0.0 1.3 1 0 0 1 1 1 1 D-ala-D-ala dipeptidase TP_methylase PF00590.20 gi|352682291|ref|YP_004892815.1| - 2.1e-46 158.5 3.5 2.5e-46 158.3 3.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases ELFV_dehydrog PF00208.21 gi|352682292|ref|YP_004892816.1| - 1.3e-66 224.8 0.1 1.7e-66 224.4 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|352682292|ref|YP_004892816.1| - 1.1e-51 174.1 0.0 5.4e-51 171.8 0.0 2.1 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|352682292|ref|YP_004892816.1| - 0.0062 15.9 0.4 0.012 15.0 0.4 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|352682292|ref|YP_004892816.1| - 0.0068 14.0 0.0 0.0098 13.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase NAD_binding_7 PF13241.6 gi|352682292|ref|YP_004892816.1| - 0.015 15.8 0.1 0.025 15.0 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Dimerisation PF08100.11 gi|352682292|ref|YP_004892816.1| - 0.032 14.2 0.0 0.13 12.3 0.0 2.0 2 0 0 2 2 2 0 Dimerisation domain OrfB_Zn_ribbon PF07282.11 gi|352682293|ref|YP_004892817.1| - 1.5e-05 24.8 0.0 2.8e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Polbeta PF18765.1 gi|352682294|ref|YP_004892818.1| - 6e-09 35.9 0.0 9.1e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|352682294|ref|YP_004892818.1| - 2.7e-07 30.8 0.0 3.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain LTD PF00932.19 gi|352682296|ref|YP_004892820.1| - 0.052 13.9 0.0 0.078 13.3 0.0 1.4 1 1 0 1 1 1 0 Lamin Tail Domain AMP-binding PF00501.28 gi|352682297|ref|YP_004892821.1| - 4.4e-87 292.4 0.0 5.5e-87 292.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|352682297|ref|YP_004892821.1| - 6e-24 83.7 1.8 1.7e-23 82.3 1.8 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|352682297|ref|YP_004892821.1| - 8.1e-24 84.4 1.6 2e-23 83.2 1.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Aldedh PF00171.22 gi|352682298|ref|YP_004892822.1| - 1.2e-152 508.6 0.3 1.5e-152 508.4 0.3 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family HpaB_N PF11794.8 gi|352682299|ref|YP_004892823.1| - 1.5e-100 336.4 0.7 2.4e-100 335.7 0.3 1.5 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|352682299|ref|YP_004892823.1| - 6.2e-66 221.3 0.0 9.6e-66 220.7 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|352682299|ref|YP_004892823.1| - 0.0015 18.7 0.0 0.0032 17.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|352682299|ref|YP_004892823.1| - 0.053 13.7 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain CBS PF00571.28 gi|352682300|ref|YP_004892824.1| - 5.9e-26 90.7 2.2 2.3e-13 50.3 0.4 2.1 2 0 0 2 2 2 2 CBS domain FtsK_SpoIIIE PF01580.18 gi|352682300|ref|YP_004892824.1| - 0.0031 16.9 0.1 0.0042 16.5 0.1 1.3 1 1 0 1 1 1 1 FtsK/SpoIIIE family GGDEF_2 PF17853.1 gi|352682300|ref|YP_004892824.1| - 0.0032 17.7 0.8 0.029 14.6 0.2 2.0 1 1 1 2 2 2 1 GGDEF-like domain Ribosomal_L9_C PF03948.14 gi|352682300|ref|YP_004892824.1| - 0.0074 16.7 0.0 2.9 8.4 0.0 2.3 2 0 0 2 2 2 2 Ribosomal protein L9, C-terminal domain FAD_binding_2 PF00890.24 gi|352682301|ref|YP_004892825.1| - 4.8e-106 355.3 1.7 6.4e-106 354.9 1.7 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|352682301|ref|YP_004892825.1| - 1.8e-28 99.1 0.0 2.9e-28 98.4 0.0 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|352682301|ref|YP_004892825.1| - 1e-06 28.6 5.3 1e-05 25.3 1.3 3.5 1 1 1 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|352682301|ref|YP_004892825.1| - 7.4e-05 22.1 1.0 0.00021 20.6 0.3 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.14 gi|352682301|ref|YP_004892825.1| - 7.6e-05 22.1 0.1 0.00041 19.7 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|352682301|ref|YP_004892825.1| - 0.00032 19.9 0.3 0.00059 19.0 0.3 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|352682301|ref|YP_004892825.1| - 0.0056 16.1 0.9 0.0089 15.4 0.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|352682301|ref|YP_004892825.1| - 0.011 14.9 1.1 0.017 14.2 0.6 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A HI0933_like PF03486.14 gi|352682301|ref|YP_004892825.1| - 0.017 13.9 0.2 0.14 10.8 0.5 2.0 2 0 0 2 2 2 0 HI0933-like protein Fer2_3 PF13085.6 gi|352682302|ref|YP_004892826.1| - 4.6e-27 94.2 0.1 5e-27 94.1 0.1 1.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|352682302|ref|YP_004892826.1| - 2.3e-08 33.9 0.1 3.8e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|352682302|ref|YP_004892826.1| - 0.0027 17.7 0.2 0.004 17.2 0.2 1.3 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 gi|352682302|ref|YP_004892826.1| - 0.057 13.2 6.1 0.15 11.9 6.1 1.6 1 1 0 1 1 1 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B ADH_zinc_N PF00107.26 gi|352682303|ref|YP_004892827.1| - 7e-32 110.1 4.3 1.1e-31 109.5 4.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|352682303|ref|YP_004892827.1| - 9.3e-29 99.5 0.6 5.4e-28 97.1 0.0 2.5 2 1 1 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|352682303|ref|YP_004892827.1| - 3.7e-12 47.4 0.9 4.7e-12 47.1 0.1 1.6 2 0 0 2 2 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|352682303|ref|YP_004892827.1| - 2e-06 27.5 4.2 2.9e-06 26.9 4.2 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 gi|352682303|ref|YP_004892827.1| - 8.5e-06 25.2 0.4 2.3e-05 23.8 0.4 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|352682303|ref|YP_004892827.1| - 5.2e-05 22.7 6.5 8e-05 22.0 6.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain F420_oxidored PF03807.17 gi|352682303|ref|YP_004892827.1| - 0.00066 20.2 3.0 0.0015 19.1 3.0 1.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|352682303|ref|YP_004892827.1| - 0.0065 16.7 2.9 0.0065 16.7 2.9 1.7 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|352682303|ref|YP_004892827.1| - 0.0068 16.7 1.9 0.012 15.9 1.9 1.4 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 gi|352682303|ref|YP_004892827.1| - 0.011 15.6 6.6 0.046 13.6 6.4 2.0 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|352682303|ref|YP_004892827.1| - 0.013 14.9 2.7 0.023 14.2 2.6 1.5 1 1 0 1 1 1 0 short chain dehydrogenase Shikimate_DH PF01488.20 gi|352682303|ref|YP_004892827.1| - 0.015 15.4 0.3 0.029 14.4 0.3 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase XdhC_C PF13478.6 gi|352682303|ref|YP_004892827.1| - 0.018 15.6 0.6 0.034 14.6 0.6 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain NmrA PF05368.13 gi|352682303|ref|YP_004892827.1| - 0.027 14.0 4.1 0.039 13.5 4.1 1.2 1 0 0 1 1 1 0 NmrA-like family ApbA PF02558.16 gi|352682303|ref|YP_004892827.1| - 0.037 13.7 1.6 0.064 12.9 1.6 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|352682303|ref|YP_004892827.1| - 0.059 12.9 0.8 0.093 12.3 0.8 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_3 PF03447.16 gi|352682303|ref|YP_004892827.1| - 0.079 13.6 2.2 0.18 12.5 2.2 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|352682303|ref|YP_004892827.1| - 0.13 12.5 1.9 0.25 11.6 1.9 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|352682303|ref|YP_004892827.1| - 0.47 10.9 1.9 0.88 10.0 1.9 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding PEPcase_2 PF14010.6 gi|352682304|ref|YP_004892828.1| - 1.2e-113 380.3 0.0 1.4e-113 380.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Mis12 PF05859.12 gi|352682304|ref|YP_004892828.1| - 0.18 11.8 0.2 0.34 11.0 0.2 1.4 1 0 0 1 1 1 0 Mis12 protein CBS PF00571.28 gi|352682305|ref|YP_004892829.1| - 1.1e-26 93.0 1.3 1.5e-14 54.1 0.1 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|352682305|ref|YP_004892829.1| - 0.0067 16.7 0.6 5.4 7.4 0.0 2.6 2 1 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain CBS PF00571.28 gi|352682306|ref|YP_004892830.1| - 1.3e-25 89.6 1.4 6.1e-12 45.8 1.1 2.1 2 0 0 2 2 2 2 CBS domain DisA_N PF02457.16 gi|352682306|ref|YP_004892830.1| - 0.17 11.5 0.0 0.21 11.2 0.0 1.5 1 1 0 1 1 1 0 DisA bacterial checkpoint controller nucleotide-binding Thiolase_N PF00108.23 gi|352682307|ref|YP_004892831.1| - 2.1e-24 86.3 1.7 3.5e-24 85.6 1.7 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|352682307|ref|YP_004892831.1| - 2.3e-09 36.9 0.0 4.4e-09 36.0 0.0 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|352682307|ref|YP_004892831.1| - 6.3e-05 22.7 4.5 8e-05 22.3 3.1 1.8 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Ketoacyl-synt_C PF02801.22 gi|352682307|ref|YP_004892831.1| - 0.0075 16.3 2.9 0.79 9.7 0.0 3.8 4 0 0 4 4 4 1 Beta-ketoacyl synthase, C-terminal domain DUF35_N PF12172.8 gi|352682308|ref|YP_004892832.1| - 4.9e-10 39.1 2.7 7.2e-10 38.6 2.7 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|352682308|ref|YP_004892832.1| - 6.1e-05 22.9 1.0 8.8e-05 22.4 1.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated Auto_anti-p27 PF06677.12 gi|352682308|ref|YP_004892832.1| - 0.0031 17.6 0.9 0.0053 16.9 0.9 1.5 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NMD3 PF04981.13 gi|352682308|ref|YP_004892832.1| - 0.0074 15.8 0.2 0.0094 15.4 0.2 1.1 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|352682308|ref|YP_004892832.1| - 0.0087 16.1 0.3 0.012 15.6 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|352682308|ref|YP_004892832.1| - 0.019 14.3 0.2 0.7 9.3 0.0 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Ribosomal_L32p PF01783.23 gi|352682308|ref|YP_004892832.1| - 0.025 14.8 0.2 0.04 14.2 0.2 1.3 1 0 0 1 1 1 0 Ribosomal L32p protein family TackOD1 PF18551.1 gi|352682308|ref|YP_004892832.1| - 0.097 12.3 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-NADH-PPase PF09297.11 gi|352682308|ref|YP_004892832.1| - 0.12 12.0 1.9 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|352682308|ref|YP_004892832.1| - 0.3 10.9 2.7 5.3 6.9 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352682308|ref|YP_004892832.1| - 1.1 9.4 5.7 5.4 7.1 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|352682308|ref|YP_004892832.1| - 5 6.7 7.3 20 4.7 7.3 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Acyl-CoA_dh_1 PF00441.24 gi|352682309|ref|YP_004892833.1| - 2.1e-34 118.9 4.2 3.7e-34 118.1 4.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|352682309|ref|YP_004892833.1| - 1.3e-20 74.1 0.2 1.1e-19 71.1 0.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|352682309|ref|YP_004892833.1| - 1.5e-17 63.6 0.0 3e-17 62.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|352682309|ref|YP_004892833.1| - 1.8e-14 54.1 2.8 3.1e-14 53.4 2.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|352682310|ref|YP_004892834.1| - 6.6e-44 149.7 0.3 1.2e-43 148.9 0.3 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|352682310|ref|YP_004892834.1| - 3.5e-29 101.7 0.1 7.4e-29 100.7 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|352682310|ref|YP_004892834.1| - 1.3e-22 79.7 0.0 2.4e-22 79.0 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|352682310|ref|YP_004892834.1| - 5.3e-18 65.6 0.5 1.1e-17 64.6 0.5 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain ATP-cone PF03477.16 gi|352682311|ref|YP_004892835.1| - 1.7e-06 28.5 0.6 4.5e-06 27.1 0.1 1.9 2 1 0 2 2 2 1 ATP cone domain DUF3368 PF11848.8 gi|352682311|ref|YP_004892835.1| - 0.076 12.8 3.2 0.68 9.8 0.0 3.5 4 1 0 4 4 4 0 Domain of unknown function (DUF3368) SPO22 PF08631.10 gi|352682311|ref|YP_004892835.1| - 0.087 12.3 0.0 0.29 10.6 0.0 1.8 1 1 1 2 2 2 0 Meiosis protein SPO22/ZIP4 like RHH_1 PF01402.21 gi|352682311|ref|YP_004892835.1| - 0.11 12.5 4.8 2.2 8.3 0.5 3.0 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family Grg1 PF11034.8 gi|352682311|ref|YP_004892835.1| - 0.13 12.5 0.1 0.25 11.6 0.1 1.5 1 0 0 1 1 1 0 Glucose-repressible protein Grg1 SRP54_N PF02881.19 gi|352682311|ref|YP_004892835.1| - 0.66 10.2 4.2 1.9 8.8 0.2 2.5 3 0 0 3 3 3 0 SRP54-type protein, helical bundle domain AMP-binding PF00501.28 gi|352682312|ref|YP_004892836.1| - 2.6e-87 293.1 0.0 3.2e-87 292.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|352682312|ref|YP_004892836.1| - 2.5e-28 98.9 0.4 9.5e-28 97.0 0.3 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|352682312|ref|YP_004892836.1| - 2e-22 78.8 1.8 2e-22 78.8 1.8 2.9 3 0 0 3 3 3 1 Acetyl-coenzyme A synthetase N-terminus DUF5420 PF17457.2 gi|352682312|ref|YP_004892836.1| - 0.22 11.4 0.0 0.49 10.2 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5420) 4HBT_2 PF13279.6 gi|352682313|ref|YP_004892837.1| - 9e-06 26.2 0.0 1.1e-05 25.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|352682313|ref|YP_004892837.1| - 0.00048 20.4 0.0 0.00078 19.8 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily TruB_C PF09142.11 gi|352682313|ref|YP_004892837.1| - 0.016 14.9 0.0 0.044 13.6 0.0 1.6 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal CobW_C PF07683.14 gi|352682313|ref|YP_004892837.1| - 0.078 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain CoA_transf_3 PF02515.17 gi|352682314|ref|YP_004892838.1| - 9.9e-58 196.0 0.0 1.4e-57 195.5 0.0 1.3 1 0 0 1 1 1 1 CoA-transferase family III Bmp PF02608.14 gi|352682315|ref|YP_004892839.1| - 7e-56 189.4 3.5 1.1e-55 188.8 3.5 1.3 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like DUF2749 PF10907.8 gi|352682315|ref|YP_004892839.1| - 0.057 13.6 1.3 0.2 11.8 1.3 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) DUF4330 PF14221.6 gi|352682315|ref|YP_004892839.1| - 0.061 13.5 0.4 0.13 12.4 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF4088 PF13317.6 gi|352682315|ref|YP_004892839.1| - 0.075 12.6 0.0 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4088) DUF929 PF06053.11 gi|352682315|ref|YP_004892839.1| - 1.2 8.4 4.3 4.3 6.6 0.3 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF929) FeoB_associated PF12669.7 gi|352682315|ref|YP_004892839.1| - 1.9 9.0 4.7 4.4 7.8 3.0 2.3 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein ABC_tran PF00005.27 gi|352682316|ref|YP_004892840.1| - 4.4e-41 140.6 0.0 1e-27 97.3 0.0 2.4 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|352682316|ref|YP_004892840.1| - 1.1e-09 38.5 0.2 0.00063 19.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|352682316|ref|YP_004892840.1| - 1.8e-05 24.4 0.0 0.03 14.1 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|352682316|ref|YP_004892840.1| - 0.01 16.4 0.1 0.015 15.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|352682316|ref|YP_004892840.1| - 0.011 15.7 0.2 0.53 10.2 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase AAA_30 PF13604.6 gi|352682316|ref|YP_004892840.1| - 0.023 14.4 0.0 0.068 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|352682316|ref|YP_004892840.1| - 0.025 14.9 0.1 0.31 11.3 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|352682316|ref|YP_004892840.1| - 0.029 14.8 0.0 0.3 11.5 0.0 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|352682316|ref|YP_004892840.1| - 0.045 14.1 0.0 0.11 12.8 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain DLIC PF05783.11 gi|352682316|ref|YP_004892840.1| - 0.054 12.3 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Rad17 PF03215.15 gi|352682316|ref|YP_004892840.1| - 0.056 13.4 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|352682316|ref|YP_004892840.1| - 0.082 12.6 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|352682316|ref|YP_004892840.1| - 0.084 12.6 0.0 0.16 11.6 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain DUF3584 PF12128.8 gi|352682316|ref|YP_004892840.1| - 0.091 10.3 0.1 0.13 9.8 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TsaE PF02367.17 gi|352682316|ref|YP_004892840.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|352682316|ref|YP_004892840.1| - 0.18 11.7 0.1 0.38 10.7 0.1 1.5 1 0 0 1 1 1 0 NACHT domain BPD_transp_2 PF02653.16 gi|352682317|ref|YP_004892841.1| - 1.9e-37 128.9 32.2 1.9e-37 128.9 32.2 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|352682318|ref|YP_004892842.1| - 7.8e-39 133.4 33.5 1e-38 133.1 33.5 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Sugar_tr PF00083.24 gi|352682319|ref|YP_004892843.1| - 1.9e-32 112.7 26.7 4.3e-21 75.3 7.0 2.0 1 1 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|352682319|ref|YP_004892843.1| - 6.5e-21 74.6 60.8 5.4e-13 48.6 29.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Oxidored_q2 PF00420.24 gi|352682319|ref|YP_004892843.1| - 6.5 6.4 16.3 8.3 6.1 6.6 3.6 3 1 0 3 3 3 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MFS_1 PF07690.16 gi|352682320|ref|YP_004892844.1| - 1.9e-46 158.6 47.8 9.5e-34 116.9 25.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|352682320|ref|YP_004892844.1| - 2.3e-37 129.0 18.9 3.1e-36 125.2 18.8 2.1 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|352682320|ref|YP_004892844.1| - 1.8e-06 27.6 26.9 4.3e-05 23.0 26.8 2.1 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|352682320|ref|YP_004892844.1| - 1.7 7.4 21.3 0.48 9.2 5.7 3.2 1 1 2 4 4 4 0 MFS_1 like family ELFV_dehydrog PF00208.21 gi|352682321|ref|YP_004892845.1| - 3.9e-63 213.4 0.1 5.1e-63 213.0 0.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|352682321|ref|YP_004892845.1| - 2.4e-50 169.7 0.0 7.7e-50 168.1 0.0 1.8 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|352682321|ref|YP_004892845.1| - 0.0011 18.3 0.1 0.0022 17.4 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|352682321|ref|YP_004892845.1| - 0.0071 13.9 0.0 0.0099 13.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase AdoHcyase_NAD PF00670.21 gi|352682321|ref|YP_004892845.1| - 0.058 13.5 0.2 0.48 10.5 0.1 2.1 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Dimerisation PF08100.11 gi|352682321|ref|YP_004892845.1| - 0.1 12.7 0.0 0.37 10.8 0.0 2.0 1 0 0 1 1 1 0 Dimerisation domain Asp_decarbox PF02261.16 gi|352682322|ref|YP_004892846.1| - 2.1e-33 114.7 0.0 2.4e-33 114.5 0.0 1.1 1 0 0 1 1 1 1 Aspartate decarboxylase Pilin_N PF07790.11 gi|352682323|ref|YP_004892847.1| - 0.0024 18.7 0.7 0.0053 17.7 0.7 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF973 PF06157.11 gi|352682326|ref|YP_004892850.1| - 0.0072 15.4 4.8 0.17 10.9 4.8 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Pilin_N PF07790.11 gi|352682326|ref|YP_004892850.1| - 0.046 14.6 0.0 0.08 13.9 0.0 1.5 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal T2SSF PF00482.23 gi|352682327|ref|YP_004892851.1| - 1.5e-12 47.5 2.9 2.7e-12 46.8 2.9 1.4 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|352682328|ref|YP_004892852.1| - 2.1e-48 164.8 0.0 3.7e-48 164.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|352682328|ref|YP_004892852.1| - 3.9e-07 30.7 0.0 6.4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|352682328|ref|YP_004892852.1| - 0.00015 21.4 0.0 0.00035 20.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|352682328|ref|YP_004892852.1| - 0.00017 22.0 0.0 0.00041 20.8 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|352682328|ref|YP_004892852.1| - 0.0005 20.6 0.1 0.001 19.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352682328|ref|YP_004892852.1| - 0.00052 20.3 0.0 0.0054 17.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_21 PF13304.6 gi|352682328|ref|YP_004892852.1| - 0.00096 19.0 0.0 0.0026 17.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 gi|352682328|ref|YP_004892852.1| - 0.0017 18.6 0.0 0.0039 17.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|352682328|ref|YP_004892852.1| - 0.002 18.1 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|352682328|ref|YP_004892852.1| - 0.0021 18.1 0.0 0.0063 16.6 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase cobW PF02492.19 gi|352682328|ref|YP_004892852.1| - 0.0034 17.0 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|352682328|ref|YP_004892852.1| - 0.0087 15.8 0.0 0.022 14.5 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|352682328|ref|YP_004892852.1| - 0.013 14.9 0.2 0.037 13.4 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_7 PF12775.7 gi|352682328|ref|YP_004892852.1| - 0.016 14.7 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region GTP_EFTU PF00009.27 gi|352682328|ref|YP_004892852.1| - 0.019 14.5 0.1 0.036 13.6 0.1 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Guanylate_kin PF00625.21 gi|352682328|ref|YP_004892852.1| - 0.021 14.5 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase Mg_chelatase PF01078.21 gi|352682328|ref|YP_004892852.1| - 0.021 14.2 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TrwB_AAD_bind PF10412.9 gi|352682328|ref|YP_004892852.1| - 0.027 13.4 0.0 0.042 12.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|352682328|ref|YP_004892852.1| - 0.03 14.9 0.0 0.081 13.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|352682328|ref|YP_004892852.1| - 0.032 14.2 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|352682328|ref|YP_004892852.1| - 0.046 13.4 0.0 0.076 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|352682328|ref|YP_004892852.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|352682328|ref|YP_004892852.1| - 0.088 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|352682328|ref|YP_004892852.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase ATPase_2 PF01637.18 gi|352682328|ref|YP_004892852.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Dynamin_N PF00350.23 gi|352682328|ref|YP_004892852.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Dynamin family Roc PF08477.13 gi|352682328|ref|YP_004892852.1| - 0.13 12.4 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|352682328|ref|YP_004892852.1| - 0.17 11.9 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|352682328|ref|YP_004892852.1| - 0.18 11.8 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PduV-EutP PF10662.9 gi|352682328|ref|YP_004892852.1| - 0.21 11.3 0.0 0.38 10.5 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|352682328|ref|YP_004892852.1| - 0.25 11.1 0.0 0.39 10.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase PIF1 PF05970.14 gi|352682328|ref|YP_004892852.1| - 0.26 10.4 0.0 0.4 9.8 0.0 1.2 1 0 0 1 1 1 0 PIF1-like helicase DUF2236 PF09995.9 gi|352682328|ref|YP_004892852.1| - 0.96 9.6 5.6 0.16 12.1 0.6 2.1 2 2 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2236) T2SSF PF00482.23 gi|352682329|ref|YP_004892853.1| - 3.2e-16 59.4 6.1 3.2e-16 59.4 6.1 2.6 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F ATPase PF06745.13 gi|352682331|ref|YP_004892855.1| - 1.3e-26 93.4 0.2 2.1e-17 63.2 0.0 3.8 2 2 1 3 3 3 2 KaiC AAA_25 PF13481.6 gi|352682331|ref|YP_004892855.1| - 1.2e-13 51.0 2.6 1.5e-07 31.2 1.2 2.7 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|352682331|ref|YP_004892855.1| - 1.1e-11 45.1 0.0 7.5e-05 23.0 0.0 2.5 2 1 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|352682331|ref|YP_004892855.1| - 3.7e-09 36.6 0.0 0.00026 20.8 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|352682331|ref|YP_004892855.1| - 2.1e-07 30.8 0.1 0.0027 17.4 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|352682331|ref|YP_004892855.1| - 4.1e-07 30.5 0.0 0.0083 16.6 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|352682331|ref|YP_004892855.1| - 1.3e-06 28.4 0.7 0.14 12.1 0.2 3.2 2 1 0 2 2 2 2 NACHT domain ATPase_2 PF01637.18 gi|352682331|ref|YP_004892855.1| - 1.5e-06 28.4 0.1 0.0035 17.3 0.0 2.7 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea GvpD PF07088.11 gi|352682331|ref|YP_004892855.1| - 1.8e-06 26.9 0.5 1.4e-05 24.0 0.3 2.4 2 1 0 2 2 2 1 GvpD gas vesicle protein RecA PF00154.21 gi|352682331|ref|YP_004892855.1| - 2.8e-06 27.0 0.0 0.044 13.2 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_16 PF13191.6 gi|352682331|ref|YP_004892855.1| - 3e-06 27.7 0.4 0.13 12.7 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|352682331|ref|YP_004892855.1| - 3.7e-06 26.6 0.1 0.082 12.7 0.0 2.7 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|352682331|ref|YP_004892855.1| - 8.3e-06 25.9 0.0 0.016 15.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain ABC_tran PF00005.27 gi|352682331|ref|YP_004892855.1| - 9.7e-06 26.1 1.0 0.0032 18.0 0.1 2.7 3 0 0 3 3 2 1 ABC transporter AAA_33 PF13671.6 gi|352682331|ref|YP_004892855.1| - 4.9e-05 23.5 0.0 0.14 12.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|352682331|ref|YP_004892855.1| - 9.9e-05 22.3 0.4 0.2 11.7 0.1 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_23 PF13476.6 gi|352682331|ref|YP_004892855.1| - 0.00028 21.5 0.1 0.11 13.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|352682331|ref|YP_004892855.1| - 0.00055 19.8 0.0 0.71 9.6 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|352682331|ref|YP_004892855.1| - 0.00057 19.5 0.0 0.3 10.7 0.0 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|352682331|ref|YP_004892855.1| - 0.0014 18.3 1.9 0.36 10.4 0.2 2.9 2 2 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|352682331|ref|YP_004892855.1| - 0.0015 18.6 0.0 0.99 9.4 0.0 3.4 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|352682331|ref|YP_004892855.1| - 0.0018 18.2 1.7 0.13 12.2 0.0 3.5 3 1 1 4 4 4 1 NTPase CobA_CobO_BtuR PF02572.15 gi|352682331|ref|YP_004892855.1| - 0.0018 18.5 0.8 0.0058 16.9 0.0 2.1 2 0 0 2 2 2 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AAA_18 PF13238.6 gi|352682331|ref|YP_004892855.1| - 0.0056 17.2 0.0 3.6 8.1 0.0 2.6 3 0 0 3 3 2 1 AAA domain RsgA_GTPase PF03193.16 gi|352682331|ref|YP_004892855.1| - 0.011 15.7 0.1 0.94 9.4 0.0 2.4 2 0 0 2 2 2 0 RsgA GTPase AAA_21 PF13304.6 gi|352682331|ref|YP_004892855.1| - 0.011 15.6 0.3 1.3 8.8 0.0 2.8 3 0 0 3 3 3 0 AAA domain, putative AbiEii toxin, Type IV TA system NTPase_P4 PF11602.8 gi|352682331|ref|YP_004892855.1| - 0.011 14.9 0.1 0.027 13.7 0.1 1.6 1 0 0 1 1 1 0 ATPase P4 of dsRNA bacteriophage phi-12 RNA_helicase PF00910.22 gi|352682331|ref|YP_004892855.1| - 0.013 15.9 0.0 7.5 7.0 0.0 2.4 2 0 0 2 2 2 0 RNA helicase DnaB_C PF03796.15 gi|352682331|ref|YP_004892855.1| - 0.017 14.5 0.2 0.16 11.3 0.0 2.5 2 1 1 3 3 3 0 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|352682331|ref|YP_004892855.1| - 0.021 14.6 0.1 1.7 8.4 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein APS_kinase PF01583.20 gi|352682331|ref|YP_004892855.1| - 0.031 14.2 0.1 0.96 9.3 0.0 2.6 3 0 0 3 3 2 0 Adenylylsulphate kinase AAA_10 PF12846.7 gi|352682331|ref|YP_004892855.1| - 0.034 13.1 0.0 0.71 8.7 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain NB-ARC PF00931.22 gi|352682331|ref|YP_004892855.1| - 0.048 12.8 0.2 8.6 5.5 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain TK PF00265.18 gi|352682331|ref|YP_004892855.1| - 0.049 13.5 0.0 1.3 8.9 0.0 2.4 2 1 0 2 2 2 0 Thymidine kinase AAA_19 PF13245.6 gi|352682331|ref|YP_004892855.1| - 0.057 13.8 0.0 12 6.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|352682331|ref|YP_004892855.1| - 0.073 12.6 0.0 7.8 6.0 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region MeaB PF03308.16 gi|352682331|ref|YP_004892855.1| - 0.074 12.0 0.1 0.18 10.7 0.1 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Cytidylate_kin PF02224.18 gi|352682331|ref|YP_004892855.1| - 0.077 12.7 0.9 4.7 6.9 0.1 2.8 2 1 0 2 2 2 0 Cytidylate kinase PhoH PF02562.16 gi|352682331|ref|YP_004892855.1| - 0.092 12.2 0.6 1.7 8.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein TrwB_AAD_bind PF10412.9 gi|352682331|ref|YP_004892855.1| - 0.093 11.6 0.3 0.36 9.7 0.0 2.0 3 0 0 3 3 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.6 gi|352682331|ref|YP_004892855.1| - 0.095 13.1 0.0 10 6.6 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|352682331|ref|YP_004892855.1| - 0.11 11.4 1.4 0.26 10.2 0.0 2.1 3 0 0 3 3 3 0 PrkA AAA domain T2SSE PF00437.20 gi|352682331|ref|YP_004892855.1| - 0.12 11.5 0.0 2.3 7.2 0.0 2.6 3 0 0 3 3 3 0 Type II/IV secretion system protein PRK PF00485.18 gi|352682331|ref|YP_004892855.1| - 0.14 11.9 0.0 2.2 8.0 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF2075 PF09848.9 gi|352682331|ref|YP_004892855.1| - 0.14 11.3 0.0 7.4 5.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_35 PF14516.6 gi|352682331|ref|YP_004892855.1| - 0.19 10.5 0.0 0.35 9.7 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain CBS PF00571.28 gi|352682333|ref|YP_004892857.1| - 3.3e-31 107.5 3.2 3.9e-15 56.0 0.1 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|352682333|ref|YP_004892857.1| - 0.012 15.9 0.0 0.093 13.0 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain ANF_receptor PF01094.28 gi|352682334|ref|YP_004892858.1| - 4.6e-49 167.4 0.1 7.6e-49 166.7 0.1 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|352682334|ref|YP_004892858.1| - 5.2e-43 148.0 17.5 5.2e-43 148.0 17.5 1.6 2 0 0 2 2 2 1 Periplasmic binding protein LppC PF04348.13 gi|352682334|ref|YP_004892858.1| - 1.2e-08 34.2 3.8 1.8e-08 33.6 3.8 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|352682334|ref|YP_004892858.1| - 1.2e-07 31.1 0.2 0.0018 17.3 0.0 2.4 2 0 0 2 2 2 2 Periplasmic binding protein domain Shisa PF13908.6 gi|352682334|ref|YP_004892858.1| - 0.15 12.3 2.9 0.32 11.2 2.9 1.5 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator tRNA_anti-like PF12869.7 gi|352682334|ref|YP_004892858.1| - 0.32 10.6 2.2 0.72 9.4 2.2 1.6 1 0 0 1 1 1 0 tRNA_anti-like Pilin_N PF07790.11 gi|352682334|ref|YP_004892858.1| - 0.58 11.1 5.6 1.9 9.4 5.6 1.9 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Wzz PF02706.15 gi|352682334|ref|YP_004892858.1| - 4.5 7.6 12.2 0.93 9.8 6.5 2.3 2 0 0 2 2 2 0 Chain length determinant protein BPD_transp_2 PF02653.16 gi|352682335|ref|YP_004892859.1| - 1.3e-39 136.0 38.9 1.7e-39 135.6 38.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|352682336|ref|YP_004892860.1| - 5.4e-42 143.8 38.7 5.4e-42 143.8 38.7 2.1 2 1 0 2 2 2 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|352682337|ref|YP_004892861.1| - 1.4e-39 136.7 12.3 1.4e-39 136.7 12.3 1.6 2 0 0 2 2 2 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|352682337|ref|YP_004892861.1| - 6.1e-39 134.1 0.1 1e-38 133.4 0.1 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|352682337|ref|YP_004892861.1| - 4.9e-07 29.1 0.4 0.00021 20.4 0.0 2.3 2 0 0 2 2 2 2 Periplasmic binding protein domain LppC PF04348.13 gi|352682337|ref|YP_004892861.1| - 7.1e-06 25.1 3.1 1e-05 24.6 3.1 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein Shisa PF13908.6 gi|352682337|ref|YP_004892861.1| - 0.17 12.1 3.2 0.34 11.1 3.2 1.4 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator tRNA_anti-like PF12869.7 gi|352682337|ref|YP_004892861.1| - 0.31 10.6 2.2 0.72 9.5 2.2 1.6 1 0 0 1 1 1 0 tRNA_anti-like Pilin_N PF07790.11 gi|352682337|ref|YP_004892861.1| - 0.38 11.7 5.3 1.6 9.7 5.3 2.1 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Wzz PF02706.15 gi|352682337|ref|YP_004892861.1| - 2.4 8.5 10.8 1.5 9.1 7.2 2.3 2 0 0 2 2 2 0 Chain length determinant protein ABC_tran PF00005.27 gi|352682338|ref|YP_004892862.1| - 1.7e-28 99.8 0.0 2.2e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|352682338|ref|YP_004892862.1| - 2.3e-07 30.5 0.0 3.9e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|352682338|ref|YP_004892862.1| - 2.9e-07 30.6 1.5 0.00019 21.4 0.4 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|352682338|ref|YP_004892862.1| - 9.3e-06 25.4 0.2 1.7e-05 24.6 0.2 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|352682338|ref|YP_004892862.1| - 1.9e-05 25.3 0.1 4.5e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|352682338|ref|YP_004892862.1| - 0.00014 22.3 0.0 0.00019 21.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|352682338|ref|YP_004892862.1| - 0.00028 20.7 0.0 0.00049 19.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|352682338|ref|YP_004892862.1| - 0.00078 19.2 0.0 0.0012 18.6 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|352682338|ref|YP_004892862.1| - 0.0013 17.9 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein SMC_N PF02463.19 gi|352682338|ref|YP_004892862.1| - 0.0025 17.3 0.1 0.0061 16.0 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352682338|ref|YP_004892862.1| - 0.004 17.4 0.1 0.013 15.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|352682338|ref|YP_004892862.1| - 0.0048 16.8 0.0 0.0079 16.1 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|352682338|ref|YP_004892862.1| - 0.0068 15.3 1.1 0.041 12.7 0.5 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|352682338|ref|YP_004892862.1| - 0.0072 16.3 0.0 0.0097 15.8 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea cobW PF02492.19 gi|352682338|ref|YP_004892862.1| - 0.012 15.2 0.1 0.02 14.5 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|352682338|ref|YP_004892862.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|352682338|ref|YP_004892862.1| - 0.016 15.3 1.0 0.28 11.3 1.0 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|352682338|ref|YP_004892862.1| - 0.025 14.2 0.0 0.049 13.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|352682338|ref|YP_004892862.1| - 0.025 14.1 0.0 0.1 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|352682338|ref|YP_004892862.1| - 0.038 14.4 0.2 0.084 13.3 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|352682338|ref|YP_004892862.1| - 0.096 12.6 0.5 1.6 8.7 0.2 2.4 2 1 0 2 2 2 0 NTPase DLIC PF05783.11 gi|352682338|ref|YP_004892862.1| - 0.11 11.3 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_33 PF13671.6 gi|352682338|ref|YP_004892862.1| - 0.12 12.5 0.1 0.37 10.9 0.1 1.6 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|352682338|ref|YP_004892862.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_13 PF13166.6 gi|352682338|ref|YP_004892862.1| - 0.13 10.9 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 gi|352682338|ref|YP_004892862.1| - 0.14 11.4 0.0 3.7 6.8 0.0 2.0 2 0 0 2 2 2 0 Septin Gtr1_RagA PF04670.12 gi|352682338|ref|YP_004892862.1| - 0.15 11.4 0.0 0.39 10.0 0.0 1.6 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region AAA_19 PF13245.6 gi|352682338|ref|YP_004892862.1| - 0.15 12.4 0.1 0.29 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|352682339|ref|YP_004892863.1| - 4e-30 105.1 0.0 5.1e-30 104.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352682339|ref|YP_004892863.1| - 1.6e-10 41.3 0.4 1.8e-05 24.7 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|352682339|ref|YP_004892863.1| - 3.7e-06 26.6 0.0 7.1e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|352682339|ref|YP_004892863.1| - 2e-05 24.1 0.1 0.00016 21.2 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|352682339|ref|YP_004892863.1| - 5.9e-05 23.7 0.1 9.1e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|352682339|ref|YP_004892863.1| - 0.00012 21.7 0.1 0.00021 21.0 0.1 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|352682339|ref|YP_004892863.1| - 0.00023 21.1 0.1 0.00045 20.2 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|352682339|ref|YP_004892863.1| - 0.0025 17.5 0.1 0.0065 16.2 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|352682339|ref|YP_004892863.1| - 0.033 13.8 0.1 0.059 12.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|352682339|ref|YP_004892863.1| - 0.039 14.0 0.2 0.092 12.8 0.1 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|352682339|ref|YP_004892863.1| - 0.042 13.6 0.0 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|352682339|ref|YP_004892863.1| - 0.043 14.2 0.1 0.086 13.3 0.1 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|352682339|ref|YP_004892863.1| - 0.044 14.2 0.1 0.084 13.3 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.6 gi|352682339|ref|YP_004892863.1| - 0.047 13.9 0.0 1.5 9.1 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|352682339|ref|YP_004892863.1| - 0.058 13.7 0.1 0.16 12.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|352682339|ref|YP_004892863.1| - 0.068 12.0 0.5 0.28 9.9 0.2 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class IstB_IS21 PF01695.17 gi|352682339|ref|YP_004892863.1| - 0.11 12.3 0.1 0.25 11.1 0.1 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein Dynamin_N PF00350.23 gi|352682339|ref|YP_004892863.1| - 0.2 11.7 0.1 0.23 11.5 0.1 1.5 1 1 0 1 1 1 0 Dynamin family cobW PF02492.19 gi|352682339|ref|YP_004892863.1| - 0.22 11.1 0.3 0.39 10.3 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Sugar_tr PF00083.24 gi|352682340|ref|YP_004892864.1| - 1.2e-24 87.0 20.1 4.2e-24 85.2 20.1 1.8 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|352682340|ref|YP_004892864.1| - 6.5e-18 64.8 47.9 6.5e-18 64.8 47.9 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily PBP_like PF12727.7 gi|352682341|ref|YP_004892865.1| - 9.5e-59 197.8 0.3 2.2e-58 196.6 0.1 1.7 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.17 gi|352682341|ref|YP_004892865.1| - 6.9e-48 162.4 1.1 1.3e-47 161.5 1.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|352682341|ref|YP_004892865.1| - 2.8e-21 75.7 0.0 5.6e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|352682341|ref|YP_004892865.1| - 1.6e-19 69.8 0.4 6.8e-19 67.8 0.0 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|352682341|ref|YP_004892865.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|352682341|ref|YP_004892865.1| - 0.0075 15.9 0.1 0.025 14.2 0.0 1.9 2 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein T2SSE PF00437.20 gi|352682341|ref|YP_004892865.1| - 0.037 13.1 0.0 0.14 11.2 0.0 1.9 2 0 0 2 2 2 0 Type II/IV secretion system protein NAD_binding_2 PF03446.15 gi|352682343|ref|YP_004892867.1| - 7.8e-18 65.1 0.0 1.3e-17 64.4 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|352682343|ref|YP_004892867.1| - 2.5e-13 50.3 0.2 4.9e-13 49.4 0.2 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 gi|352682343|ref|YP_004892867.1| - 8.8e-07 29.0 0.1 2.1e-06 27.7 0.1 1.6 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|352682343|ref|YP_004892867.1| - 1.2e-05 24.8 0.0 2.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|352682343|ref|YP_004892867.1| - 1.6e-05 25.0 0.0 3.2e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus F420_oxidored PF03807.17 gi|352682343|ref|YP_004892867.1| - 5.6e-05 23.7 0.0 0.00014 22.4 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|352682343|ref|YP_004892867.1| - 0.00041 20.0 0.0 0.00087 18.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|352682343|ref|YP_004892867.1| - 0.00071 19.8 0.1 0.01 16.1 0.0 2.4 2 0 0 2 2 2 1 TrkA-N domain IlvN PF07991.12 gi|352682343|ref|YP_004892867.1| - 0.014 15.0 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DpaA_N PF16924.5 gi|352682343|ref|YP_004892867.1| - 0.034 14.2 0.0 0.066 13.3 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain ThiF PF00899.21 gi|352682343|ref|YP_004892867.1| - 0.073 12.4 0.3 0.23 10.8 0.2 1.9 3 0 0 3 3 3 0 ThiF family Phage_Treg PF04761.12 gi|352682344|ref|YP_004892868.1| - 0.088 12.9 0.3 0.2 11.8 0.1 1.7 2 0 0 2 2 2 0 Lactococcus bacteriophage putative transcription regulator GATase_6 PF13522.6 gi|352682345|ref|YP_004892869.1| - 1e-06 29.0 0.1 3.8e-06 27.1 0.0 1.8 1 1 1 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|352682345|ref|YP_004892869.1| - 0.00061 18.8 0.1 0.0011 17.9 0.1 1.4 1 1 0 1 1 1 1 Glutamine amidotransferases class-II AsnC_trans_reg PF01037.21 gi|352682346|ref|YP_004892870.1| - 2.1e-17 62.8 0.3 2.4e-17 62.7 0.3 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HMA PF00403.26 gi|352682346|ref|YP_004892870.1| - 0.00094 19.6 0.1 0.0018 18.7 0.0 1.5 1 1 1 2 2 2 1 Heavy-metal-associated domain NapD PF03927.13 gi|352682346|ref|YP_004892870.1| - 0.014 15.5 0.1 0.017 15.1 0.1 1.1 1 0 0 1 1 1 0 NapD protein GYD PF08734.11 gi|352682346|ref|YP_004892870.1| - 0.035 14.1 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 GYD domain AsnC_trans_reg PF01037.21 gi|352682348|ref|YP_004892872.1| - 6.9e-21 74.0 0.0 1.2e-20 73.2 0.0 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|352682348|ref|YP_004892872.1| - 3.1e-13 49.0 0.3 6.2e-13 48.1 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|352682348|ref|YP_004892872.1| - 1.2e-12 47.4 0.3 2.2e-12 46.6 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|352682348|ref|YP_004892872.1| - 1.2e-06 28.9 0.1 2.4e-06 27.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|352682348|ref|YP_004892872.1| - 4.5e-06 26.4 0.1 8.8e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|352682348|ref|YP_004892872.1| - 1.7e-05 24.6 0.1 4.6e-05 23.2 0.1 1.7 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|352682348|ref|YP_004892872.1| - 1.9e-05 24.5 0.1 0.00012 21.9 0.0 2.1 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|352682348|ref|YP_004892872.1| - 0.00018 21.3 0.0 0.00051 19.9 0.0 1.8 1 1 1 2 2 2 1 MarR family HTH_20 PF12840.7 gi|352682348|ref|YP_004892872.1| - 0.00063 19.8 0.0 0.0011 18.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|352682348|ref|YP_004892872.1| - 0.002 18.0 0.1 0.0048 16.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|352682348|ref|YP_004892872.1| - 0.0039 17.3 0.0 0.0074 16.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_47 PF16221.5 gi|352682348|ref|YP_004892872.1| - 0.0086 15.6 0.1 0.032 13.8 0.0 1.9 2 0 0 2 2 2 1 winged helix-turn-helix HTH_28 PF13518.6 gi|352682348|ref|YP_004892872.1| - 0.011 15.8 0.3 0.059 13.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|352682348|ref|YP_004892872.1| - 0.014 15.1 0.1 0.036 13.8 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|352682348|ref|YP_004892872.1| - 0.023 14.5 0.0 0.05 13.4 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.16 gi|352682348|ref|YP_004892872.1| - 0.044 13.3 0.1 0.075 12.6 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|352682348|ref|YP_004892872.1| - 0.048 13.5 0.0 0.078 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|352682348|ref|YP_004892872.1| - 0.064 13.0 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|352682348|ref|YP_004892872.1| - 0.083 13.2 0.0 0.2 12.0 0.0 1.6 1 0 0 1 1 1 0 Penicillinase repressor RuvB_C PF05491.13 gi|352682348|ref|YP_004892872.1| - 0.084 12.8 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_23 PF13384.6 gi|352682348|ref|YP_004892872.1| - 0.1 12.5 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|352682348|ref|YP_004892872.1| - 0.1 12.3 0.1 0.23 11.1 0.1 1.6 2 0 0 2 2 1 0 Sigma-70, region 4 DNase-RNase PF02577.14 gi|352682349|ref|YP_004892873.1| - 3.4e-34 117.3 0.0 3.9e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease fn3_3 PF14686.6 gi|352682349|ref|YP_004892873.1| - 0.0076 16.0 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide lyase family 4, domain II FlgD_ig PF13860.6 gi|352682349|ref|YP_004892873.1| - 0.11 12.4 0.0 11 6.0 0.0 2.4 1 1 1 2 2 2 0 FlgD Ig-like domain MR_MLE_C PF13378.6 gi|352682350|ref|YP_004892874.1| - 1.7e-56 191.2 0.0 2.6e-56 190.7 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|352682350|ref|YP_004892874.1| - 1.9e-14 53.9 0.0 4.7e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DHDPS PF00701.22 gi|352682351|ref|YP_004892875.1| - 3.3e-40 137.6 0.0 3.8e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PfkB PF00294.24 gi|352682352|ref|YP_004892876.1| - 3.3e-49 167.8 0.0 3.7e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Wyosine_form PF08608.12 gi|352682352|ref|YP_004892876.1| - 0.098 13.0 0.1 0.16 12.3 0.1 1.3 1 0 0 1 1 1 0 Wyosine base formation Glyco_hydro_15 PF00723.21 gi|352682353|ref|YP_004892877.1| - 3.5e-20 72.2 0.4 2.4e-16 59.6 0.8 2.8 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.13 gi|352682353|ref|YP_004892877.1| - 3.8e-06 26.3 0.1 6.6e-06 25.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Bac_rhamnosid6H PF17389.2 gi|352682353|ref|YP_004892877.1| - 0.0017 17.7 0.0 0.0032 16.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain BacA PF02673.18 gi|352682354|ref|YP_004892878.1| - 2.2e-47 161.9 16.4 2.7e-47 161.6 16.4 1.1 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Rad51 PF08423.11 gi|352682355|ref|YP_004892879.1| - 1.1e-37 129.8 0.0 1.3e-37 129.5 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|352682355|ref|YP_004892879.1| - 3.7e-08 33.0 0.4 3.8e-07 29.7 0.4 2.1 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|352682355|ref|YP_004892879.1| - 1.4e-06 28.0 0.0 2.6e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|352682355|ref|YP_004892879.1| - 3.5e-05 23.6 0.0 6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|352682355|ref|YP_004892879.1| - 0.00026 20.5 0.0 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|352682355|ref|YP_004892879.1| - 0.0066 17.0 0.0 0.017 15.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DnaB_C PF03796.15 gi|352682355|ref|YP_004892879.1| - 0.019 14.3 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain NB-ARC PF00931.22 gi|352682355|ref|YP_004892879.1| - 0.027 13.6 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RsgA_GTPase PF03193.16 gi|352682355|ref|YP_004892879.1| - 0.052 13.4 0.0 0.084 12.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|352682355|ref|YP_004892879.1| - 0.052 14.0 0.0 0.16 12.4 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CobU PF02283.16 gi|352682355|ref|YP_004892879.1| - 0.057 13.0 0.0 0.28 10.8 0.0 1.9 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ABC_tran PF00005.27 gi|352682355|ref|YP_004892879.1| - 0.086 13.4 0.0 0.13 12.8 0.0 1.5 1 1 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|352682355|ref|YP_004892879.1| - 0.096 12.0 0.1 0.76 9.0 0.1 2.1 1 1 1 2 2 2 0 Zeta toxin MFS_1 PF07690.16 gi|352682356|ref|YP_004892880.1| - 3e-51 174.4 35.4 3e-51 174.4 35.4 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily MFS_4 PF06779.14 gi|352682356|ref|YP_004892880.1| - 1 8.6 27.6 26 3.9 27.6 2.1 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB DUF3397 PF11877.8 gi|352682358|ref|YP_004892882.1| - 0.021 15.0 0.5 0.021 15.0 0.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3397) Lactamase_B PF00753.27 gi|352682359|ref|YP_004892883.1| - 5.2e-29 101.7 0.4 6.3e-29 101.4 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|352682359|ref|YP_004892883.1| - 0.0005 19.6 0.0 0.00071 19.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|352682359|ref|YP_004892883.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DUF973 PF06157.11 gi|352682360|ref|YP_004892884.1| - 2.1e-18 66.5 18.6 5.5e-17 61.8 12.9 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF4791 PF16039.5 gi|352682360|ref|YP_004892884.1| - 0.00019 21.0 0.2 0.00027 20.5 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4791) DUF996 PF06195.13 gi|352682360|ref|YP_004892884.1| - 0.079 13.2 17.1 0.14 12.5 9.7 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF996) DUF373 PF04123.13 gi|352682360|ref|YP_004892884.1| - 0.52 9.7 8.9 0.76 9.2 8.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF373) PRA1 PF03208.19 gi|352682360|ref|YP_004892884.1| - 4.5 6.9 8.2 4.1 7.0 7.3 1.3 1 1 0 1 1 1 0 PRA1 family protein ATPase_2 PF01637.18 gi|352682361|ref|YP_004892885.1| - 8.9e-12 45.4 0.0 3.4e-11 43.5 0.0 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|352682361|ref|YP_004892885.1| - 3.9e-07 30.6 0.1 1.6e-06 28.6 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|352682361|ref|YP_004892885.1| - 4.8e-07 29.9 0.0 0.043 13.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|352682361|ref|YP_004892885.1| - 1.8e-05 25.0 0.0 4.7e-05 23.7 0.0 1.7 2 0 0 2 2 2 1 AAA domain HTH_IclR PF09339.10 gi|352682361|ref|YP_004892885.1| - 0.029 14.2 0.0 0.12 12.2 0.0 2.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain RHH_5 PF07878.11 gi|352682361|ref|YP_004892885.1| - 0.071 13.0 0.1 0.071 13.0 0.1 2.6 3 0 0 3 3 3 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Aldedh PF00171.22 gi|352682364|ref|YP_004892888.1| - 5.5e-121 404.3 0.0 6.4e-121 404.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|352682364|ref|YP_004892888.1| - 0.00047 19.3 0.0 0.0013 17.9 0.0 1.7 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) YCII PF03795.14 gi|352682364|ref|YP_004892888.1| - 0.01 16.2 0.2 0.073 13.5 0.2 2.3 1 1 0 1 1 1 0 YCII-related domain MazE_antitoxin PF04014.18 gi|352682365|ref|YP_004892889.1| - 1.3e-10 40.9 0.5 2.6e-10 40.0 0.5 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF3253 PF11625.8 gi|352682365|ref|YP_004892889.1| - 0.048 13.9 0.5 0.26 11.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) PIN PF01850.21 gi|352682366|ref|YP_004892890.1| - 1.3e-07 32.1 0.1 1.7e-07 31.8 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|352682366|ref|YP_004892890.1| - 7.3e-05 23.5 0.0 8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 PIN domain AAA_14 PF13173.6 gi|352682367|ref|YP_004892891.1| - 3.4e-19 69.2 0.0 6.4e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|352682367|ref|YP_004892891.1| - 3.5e-08 33.6 0.0 5.3e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_27 PF13514.6 gi|352682367|ref|YP_004892891.1| - 0.0044 16.6 0.0 0.0069 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|352682367|ref|YP_004892891.1| - 0.023 14.6 0.0 0.055 13.4 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea UPF0102 PF02021.17 gi|352682367|ref|YP_004892891.1| - 0.028 14.6 0.0 0.077 13.2 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 PaREP1 PF05942.11 gi|352682368|ref|YP_004892892.1| - 2.4e-24 85.5 0.3 3.6e-24 84.9 0.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Arm-DNA-bind_3 PF13356.6 gi|352682368|ref|YP_004892892.1| - 0.26 11.7 2.9 0.26 11.7 0.6 2.1 1 1 0 2 2 2 0 Arm DNA-binding domain Radical_SAM PF04055.21 gi|352682370|ref|YP_004892894.1| - 5.7e-19 69.1 0.0 1.3e-18 68.0 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|352682370|ref|YP_004892894.1| - 2.5e-12 47.2 0.0 3.6e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|352682370|ref|YP_004892894.1| - 2.5e-08 34.1 0.0 4.1e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|352682370|ref|YP_004892894.1| - 0.018 14.4 0.0 2.5 7.5 0.0 2.5 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel SoxD PF04267.12 gi|352682370|ref|YP_004892894.1| - 0.13 12.4 0.1 0.41 10.8 0.1 1.8 1 1 1 2 2 2 0 Sarcosine oxidase, delta subunit family NRDD PF13597.6 gi|352682371|ref|YP_004892895.1| - 6.7e-146 487.3 0.0 7.7e-146 487.1 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|352682371|ref|YP_004892895.1| - 0.0035 17.4 0.1 0.0069 16.4 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|352682371|ref|YP_004892895.1| - 0.063 13.3 0.3 0.14 12.2 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|352682371|ref|YP_004892895.1| - 0.07 13.9 0.1 0.12 13.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family Ribosomal_L37e PF01907.19 gi|352682371|ref|YP_004892895.1| - 0.18 12.0 2.0 0.38 10.9 2.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.6 gi|352682371|ref|YP_004892895.1| - 1.4 8.8 5.5 6.8 6.6 5.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|352682371|ref|YP_004892895.1| - 1.7 8.8 4.0 3.3 7.9 0.1 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|352682371|ref|YP_004892895.1| - 4.9 6.7 7.6 25 4.5 0.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|352682371|ref|YP_004892895.1| - 8 6.7 6.0 35 4.6 6.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 PaREP1 PF05942.11 gi|352682373|ref|YP_004892897.1| - 0.0017 18.2 0.0 0.0017 18.2 0.0 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family CRISPR_Cas6 PF10040.9 gi|352682375|ref|YP_004892899.1| - 5.9e-13 49.3 0.3 7.9e-13 48.9 0.3 1.1 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 RelB PF04221.12 gi|352682377|ref|YP_004892901.1| - 0.081 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 RelB antitoxin DsrC PF04358.13 gi|352682379|ref|YP_004892903.1| - 1.8e-34 118.5 0.0 2e-34 118.3 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein MerR-DNA-bind PF09278.11 gi|352682379|ref|YP_004892903.1| - 0.092 13.3 0.0 0.4 11.2 0.0 1.8 2 0 0 2 2 2 0 MerR, DNA binding INTS5_N PF14837.6 gi|352682379|ref|YP_004892903.1| - 0.18 11.4 0.0 0.2 11.2 0.0 1.1 1 0 0 1 1 1 0 Integrator complex subunit 5 N-terminus NIR_SIR PF01077.22 gi|352682381|ref|YP_004892905.1| - 1.3e-37 128.7 0.0 2.1e-37 128.1 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|352682381|ref|YP_004892905.1| - 5e-09 35.9 0.0 9.4e-09 35.0 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_9 PF13187.6 gi|352682381|ref|YP_004892905.1| - 0.0019 18.3 1.2 0.0019 18.3 1.2 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352682381|ref|YP_004892905.1| - 0.0023 18.3 0.5 0.0084 16.5 0.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682381|ref|YP_004892905.1| - 0.0042 17.6 2.2 0.0042 17.6 2.2 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352682381|ref|YP_004892905.1| - 0.0043 17.1 0.5 0.014 15.5 0.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352682381|ref|YP_004892905.1| - 0.044 13.6 12.9 0.14 12.0 4.7 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352682381|ref|YP_004892905.1| - 0.071 13.2 7.1 0.46 10.6 4.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|352682381|ref|YP_004892905.1| - 0.077 13.5 0.9 0.077 13.5 0.9 2.0 2 0 0 2 2 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|352682381|ref|YP_004892905.1| - 0.085 13.0 2.1 0.11 12.6 0.7 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|352682381|ref|YP_004892905.1| - 0.11 12.7 0.8 0.23 11.7 0.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|352682381|ref|YP_004892905.1| - 0.12 12.4 8.0 3.2 7.9 0.0 3.8 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster Fer4_2 PF12797.7 gi|352682381|ref|YP_004892905.1| - 1.5 9.1 8.3 0.18 12.0 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NIR_SIR PF01077.22 gi|352682382|ref|YP_004892906.1| - 2.2e-31 108.5 0.0 3.2e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|352682382|ref|YP_004892906.1| - 0.0014 18.4 0.0 0.0049 16.7 0.0 1.9 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Nitrate_red_gam PF02665.14 gi|352682383|ref|YP_004892907.1| - 1.1e-33 116.7 11.9 8.4e-32 110.5 6.1 2.1 2 0 0 2 2 2 2 Nitrate reductase gamma subunit Fer4_8 PF13183.6 gi|352682385|ref|YP_004892909.1| - 5.1e-13 49.2 2.8 5.1e-13 49.2 2.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682385|ref|YP_004892909.1| - 8.1e-11 42.3 5.0 3.3e-10 40.4 5.0 2.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352682385|ref|YP_004892909.1| - 2.4e-10 40.8 2.9 2.4e-10 40.8 2.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352682385|ref|YP_004892909.1| - 8.2e-09 35.4 5.6 8.2e-09 35.4 5.6 2.1 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352682385|ref|YP_004892909.1| - 2.2e-08 34.9 3.4 2.2e-08 34.9 3.4 2.0 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain CCG PF02754.16 gi|352682385|ref|YP_004892909.1| - 4.7e-08 33.1 0.3 4.7e-08 33.1 0.3 2.7 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|352682385|ref|YP_004892909.1| - 3.9e-07 30.1 7.3 1.4e-05 25.2 8.5 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352682385|ref|YP_004892909.1| - 1.6e-05 25.1 10.9 0.00036 20.8 2.0 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|352682385|ref|YP_004892909.1| - 1.9e-05 24.9 1.8 0.12 12.6 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352682385|ref|YP_004892909.1| - 3.5e-05 23.4 15.3 0.00012 21.7 4.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352682385|ref|YP_004892909.1| - 0.00025 21.1 6.3 0.039 14.1 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352682385|ref|YP_004892909.1| - 0.00028 20.8 3.8 0.00028 20.8 3.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352682385|ref|YP_004892909.1| - 0.00029 20.8 12.9 0.00056 19.9 3.0 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|352682385|ref|YP_004892909.1| - 0.00052 20.8 1.9 0.37 11.7 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352682385|ref|YP_004892909.1| - 0.0073 17.0 1.6 0.1 13.3 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Complex1_LYR PF05347.15 gi|352682385|ref|YP_004892909.1| - 0.036 14.1 0.1 0.091 12.8 0.1 1.6 1 0 0 1 1 1 0 Complex 1 protein (LYR family) Fer4_3 PF12798.7 gi|352682385|ref|YP_004892909.1| - 0.044 14.7 5.0 0.044 14.7 5.0 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|352682385|ref|YP_004892909.1| - 0.074 13.6 8.4 0.21 12.2 1.7 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Rrf2 PF02082.20 gi|352682386|ref|YP_004892910.1| - 0.0008 19.7 0.0 0.0016 18.7 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|352682386|ref|YP_004892910.1| - 0.012 15.6 0.0 0.029 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|352682386|ref|YP_004892910.1| - 0.046 13.9 0.0 0.11 12.7 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|352682386|ref|YP_004892910.1| - 0.071 13.0 0.0 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 MarR family DUF1641 PF07849.11 gi|352682387|ref|YP_004892911.1| - 2.6e-13 49.6 0.3 5.7e-10 38.9 0.2 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1641) Pyr_redox_2 PF07992.14 gi|352682388|ref|YP_004892912.1| - 7.6e-16 58.2 0.0 4.4e-09 36.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352682388|ref|YP_004892912.1| - 0.00019 21.9 0.3 0.12 13.0 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|352682388|ref|YP_004892912.1| - 0.0014 18.6 0.1 0.32 11.0 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DAO PF01266.24 gi|352682388|ref|YP_004892912.1| - 0.0033 17.1 0.1 3.9 7.0 0.1 3.1 2 1 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|352682388|ref|YP_004892912.1| - 0.092 13.0 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|352682388|ref|YP_004892912.1| - 0.15 10.9 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase GATase_3 PF07685.14 gi|352682389|ref|YP_004892913.1| - 3.1e-33 115.0 0.0 4.5e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|352682389|ref|YP_004892913.1| - 9.3e-16 58.0 0.0 1.7e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|352682389|ref|YP_004892913.1| - 1.5e-14 54.3 3.0 3.5e-09 36.8 0.0 2.7 2 1 0 3 3 3 2 AAA domain IncF PF17626.2 gi|352682389|ref|YP_004892913.1| - 0.0022 18.3 0.2 0.0077 16.6 0.1 1.9 2 0 0 2 2 2 1 Inclusion membrane protein F MipZ PF09140.11 gi|352682389|ref|YP_004892913.1| - 0.12 11.6 0.0 0.91 8.7 0.0 2.0 2 0 0 2 2 2 0 ATPase MipZ TP_methylase PF00590.20 gi|352682390|ref|YP_004892914.1| - 1.1e-39 136.6 1.1 1.3e-39 136.3 1.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Oxidored_molyb PF00174.19 gi|352682391|ref|YP_004892915.1| - 2.9e-33 114.9 0.0 3.6e-33 114.6 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Lactamase_B_3 PF13483.6 gi|352682392|ref|YP_004892916.1| - 2e-16 60.3 0.0 2.3e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|352682392|ref|YP_004892916.1| - 2.1e-11 43.7 0.1 2.3e-10 40.4 0.0 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|352682392|ref|YP_004892916.1| - 0.0025 17.9 1.1 1.4 8.9 0.1 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily FdhD-NarQ PF02634.15 gi|352682393|ref|YP_004892917.1| - 1.6e-37 129.4 1.7 2.2e-37 129.0 1.7 1.2 1 0 0 1 1 1 1 FdhD/NarQ family FdhE PF04216.12 gi|352682394|ref|YP_004892918.1| - 5.8e-06 26.4 0.1 6.4e-06 26.3 0.1 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Rubredoxin PF00301.20 gi|352682394|ref|YP_004892918.1| - 0.0074 16.3 7.7 0.4 10.7 0.8 3.5 3 0 0 3 3 3 2 Rubredoxin Lar_restr_allev PF14354.6 gi|352682394|ref|YP_004892918.1| - 0.0077 16.6 2.2 0.088 13.2 2.2 2.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|352682394|ref|YP_004892918.1| - 0.19 11.3 4.6 11 5.7 0.1 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|352682394|ref|YP_004892918.1| - 0.32 10.8 9.7 2.9 7.7 0.6 3.7 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|352682394|ref|YP_004892918.1| - 0.97 9.5 5.6 8.7 6.5 5.6 2.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|352682394|ref|YP_004892918.1| - 1.3 8.5 11.7 3.6 7.1 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Cys_rich_KTR PF14205.6 gi|352682394|ref|YP_004892918.1| - 2.6 7.9 5.7 7.7 6.4 2.2 2.7 2 1 0 2 2 2 0 Cysteine-rich KTR OrfB_Zn_ribbon PF07282.11 gi|352682394|ref|YP_004892918.1| - 4.6 7.2 9.9 9.2 6.3 0.6 3.2 1 1 3 4 4 4 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|352682394|ref|YP_004892918.1| - 5.4 6.8 20.3 3.6 7.4 9.0 3.0 3 0 0 3 3 3 0 Rubredoxin metal binding domain Ni_hydr_CYTB PF01292.20 gi|352682395|ref|YP_004892919.1| - 2.9e-14 53.1 9.6 3.4e-14 52.8 9.6 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|352682395|ref|YP_004892919.1| - 0.011 16.2 16.3 0.15 12.6 7.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) SUR7 PF06687.12 gi|352682395|ref|YP_004892919.1| - 0.91 9.1 4.3 0.98 9.0 0.9 2.5 2 1 0 2 2 2 0 SUR7/PalI family Fer4_11 PF13247.6 gi|352682396|ref|YP_004892920.1| - 5.3e-25 87.5 9.7 5.3e-25 87.5 9.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682396|ref|YP_004892920.1| - 4.5e-15 56.0 19.0 3.9e-07 30.5 0.8 3.6 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352682396|ref|YP_004892920.1| - 4.6e-12 45.2 38.5 2.5e-07 30.2 3.7 5.4 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352682396|ref|YP_004892920.1| - 5.1e-12 45.8 19.9 4.7e-06 26.7 7.8 3.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352682396|ref|YP_004892920.1| - 2.8e-11 43.4 25.8 2.8e-07 30.5 10.5 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352682396|ref|YP_004892920.1| - 1.7e-09 37.4 39.8 2e-05 24.5 3.7 4.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|352682396|ref|YP_004892920.1| - 2.4e-08 33.6 36.0 1.4e-05 24.9 1.9 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352682396|ref|YP_004892920.1| - 1.4e-06 28.3 29.3 5.6e-05 23.2 10.5 3.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352682396|ref|YP_004892920.1| - 2.2e-06 28.0 22.4 0.00079 19.8 1.9 3.6 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|352682396|ref|YP_004892920.1| - 3.1e-06 27.7 39.7 0.07 14.1 2.7 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352682396|ref|YP_004892920.1| - 2.8e-05 24.9 28.6 0.18 12.8 4.8 4.9 4 1 1 5 5 5 4 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|352682396|ref|YP_004892920.1| - 6.1e-05 23.7 17.7 0.071 13.9 4.2 4.0 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|352682396|ref|YP_004892920.1| - 0.00013 22.2 36.1 0.013 16.0 1.4 4.4 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|352682396|ref|YP_004892920.1| - 0.005 17.3 25.4 0.13 12.8 8.5 4.3 3 1 1 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|352682396|ref|YP_004892920.1| - 0.012 16.1 26.6 1.6 9.4 0.7 4.4 3 2 1 4 4 4 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|352682396|ref|YP_004892920.1| - 2 8.6 9.2 1.7 8.8 2.2 3.1 3 0 0 3 3 3 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|352682396|ref|YP_004892920.1| - 3.3 8.6 21.0 0.25 12.2 2.5 4.0 3 1 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|352682397|ref|YP_004892921.1| - 2.5e-42 145.4 0.0 1.2e-40 139.8 0.0 3.0 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|352682397|ref|YP_004892921.1| - 3.3e-13 49.7 0.0 7.2e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|352682397|ref|YP_004892921.1| - 3.4e-12 46.2 0.2 7.9e-12 45.0 0.2 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|352682397|ref|YP_004892921.1| - 0.0018 18.0 1.3 0.0057 16.4 1.3 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UPF0227 PF05728.12 gi|352682398|ref|YP_004892922.1| - 0.0083 16.1 0.0 0.0083 16.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Antimicrobial20 PF08256.11 gi|352682398|ref|YP_004892922.1| - 6.4 7.6 6.7 18 6.2 0.9 2.5 2 0 0 2 2 2 0 Aurein-like antibiotic peptide TrmB PF01978.19 gi|352682399|ref|YP_004892923.1| - 0.00076 19.3 0.6 0.0014 18.5 0.6 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|352682399|ref|YP_004892923.1| - 0.018 14.9 0.1 0.037 13.8 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain NurA PF09376.10 gi|352682400|ref|YP_004892924.1| - 1.8e-34 119.5 0.4 3e-34 118.8 0.4 1.3 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|352682401|ref|YP_004892925.1| - 2.9e-34 119.1 0.0 5e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|352682401|ref|YP_004892925.1| - 2e-09 37.4 1.8 3e-09 36.9 0.1 2.2 3 0 0 3 3 3 1 HAS barrel domain DUF853 PF05872.12 gi|352682401|ref|YP_004892925.1| - 3.6e-08 32.5 0.3 0.00053 18.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|352682401|ref|YP_004892925.1| - 2e-07 30.3 0.0 5.3e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|352682401|ref|YP_004892925.1| - 3.7e-05 23.2 0.5 0.023 14.1 0.0 2.9 2 1 0 2 2 2 2 FtsK/SpoIIIE family ResIII PF04851.15 gi|352682401|ref|YP_004892925.1| - 5.7e-05 23.2 0.0 0.00072 19.6 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T4SS-DNA_transf PF02534.14 gi|352682401|ref|YP_004892925.1| - 0.00044 19.2 0.0 0.0007 18.5 0.0 1.2 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA PF00004.29 gi|352682401|ref|YP_004892925.1| - 0.0035 17.8 0.0 0.011 16.1 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|352682401|ref|YP_004892925.1| - 0.055 13.1 0.0 0.29 10.8 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) CbiA PF01656.23 gi|352682401|ref|YP_004892925.1| - 0.11 12.5 0.0 1.6 8.8 0.0 2.6 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|352682401|ref|YP_004892925.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DEAD PF00270.29 gi|352682401|ref|YP_004892925.1| - 0.16 11.7 0.0 0.36 10.6 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|352682401|ref|YP_004892925.1| - 0.17 12.2 0.0 2.9 8.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|352682401|ref|YP_004892925.1| - 0.26 10.1 0.0 0.91 8.4 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Metallophos PF00149.28 gi|352682402|ref|YP_004892926.1| - 9.9e-12 45.8 0.0 2.2e-11 44.7 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|352682402|ref|YP_004892926.1| - 3.4e-10 40.4 0.0 6.1e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4175 PF13779.6 gi|352682402|ref|YP_004892926.1| - 0.014 13.4 3.7 0.048 11.6 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4175) SMC_N PF02463.19 gi|352682403|ref|YP_004892927.1| - 2.7e-22 79.3 0.0 9.8e-22 77.5 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|352682403|ref|YP_004892927.1| - 3.5e-17 63.6 6.6 3.5e-17 63.6 6.6 4.6 1 1 1 2 2 1 1 AAA domain AAA_15 PF13175.6 gi|352682403|ref|YP_004892927.1| - 5e-12 46.2 0.0 1.9e-07 31.2 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|352682403|ref|YP_004892927.1| - 9.9e-12 45.3 16.0 3.1e-05 23.9 0.0 3.4 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|352682403|ref|YP_004892927.1| - 2.3e-10 39.8 24.0 7.6e-05 21.6 22.4 3.4 2 1 1 3 3 3 2 AAA domain ABC_tran PF00005.27 gi|352682403|ref|YP_004892927.1| - 3.9e-08 33.9 1.6 0.013 16.0 0.5 3.9 3 2 0 3 3 3 2 ABC transporter AAA_29 PF13555.6 gi|352682403|ref|YP_004892927.1| - 3.1e-06 26.8 0.0 5.2e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain GAS PF13851.6 gi|352682403|ref|YP_004892927.1| - 3.9e-05 23.1 59.4 0.00027 20.3 11.9 4.2 2 2 2 4 4 4 2 Growth-arrest specific micro-tubule binding AAA_27 PF13514.6 gi|352682403|ref|YP_004892927.1| - 0.00018 21.2 0.0 0.00018 21.2 0.0 5.3 4 1 0 5 5 5 1 AAA domain SbcCD_C PF13558.6 gi|352682403|ref|YP_004892927.1| - 0.0027 17.9 0.3 0.011 15.9 0.0 2.3 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Rad50_zn_hook PF04423.14 gi|352682403|ref|YP_004892927.1| - 0.0032 17.3 0.2 0.0032 17.3 0.2 5.3 5 1 0 5 5 4 1 Rad50 zinc hook motif BLOC1_2 PF10046.9 gi|352682403|ref|YP_004892927.1| - 0.0042 17.3 20.8 0.072 13.4 1.2 5.4 3 2 0 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 ATPase_2 PF01637.18 gi|352682403|ref|YP_004892927.1| - 0.02 14.8 0.5 0.069 13.0 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DivIC PF04977.15 gi|352682403|ref|YP_004892927.1| - 0.038 13.8 0.7 0.038 13.8 0.7 7.3 3 2 5 8 8 7 0 Septum formation initiator Sec34 PF04136.15 gi|352682403|ref|YP_004892927.1| - 0.069 13.0 11.2 0.22 11.4 0.7 3.7 2 2 0 3 3 3 0 Sec34-like family AAA PF00004.29 gi|352682403|ref|YP_004892927.1| - 0.09 13.2 0.0 0.62 10.5 0.0 2.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|352682403|ref|YP_004892927.1| - 0.1 12.5 0.1 0.35 10.8 0.0 2.0 2 0 0 2 2 1 0 RsgA GTPase DUF2935 PF11155.8 gi|352682403|ref|YP_004892927.1| - 0.12 12.8 0.6 11 6.4 0.5 3.7 1 1 0 1 1 1 0 Domain of unknown function (DUF2935) DUF2813 PF11398.8 gi|352682403|ref|YP_004892927.1| - 0.17 11.1 0.0 0.17 11.1 0.0 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF2813) IL2 PF00715.17 gi|352682403|ref|YP_004892927.1| - 0.2 11.6 0.5 1.9 8.4 0.1 2.5 2 0 0 2 2 2 0 Interleukin 2 DUF1664 PF07889.12 gi|352682403|ref|YP_004892927.1| - 0.38 10.8 12.1 15 5.6 0.5 4.7 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) FapA PF03961.13 gi|352682403|ref|YP_004892927.1| - 0.5 8.9 31.7 1.6 7.3 7.0 4.1 1 1 6 7 7 7 0 Flagellar Assembly Protein A Nsp1_C PF05064.13 gi|352682403|ref|YP_004892927.1| - 0.64 9.8 20.3 0.45 10.3 0.9 4.3 3 2 1 4 4 4 0 Nsp1-like C-terminal region STAT_alpha PF01017.20 gi|352682403|ref|YP_004892927.1| - 1.2 9.0 21.0 2.1 8.2 3.8 3.4 3 0 0 3 3 3 0 STAT protein, all-alpha domain CENP-F_leu_zip PF10473.9 gi|352682403|ref|YP_004892927.1| - 1.4 8.9 64.1 0.057 13.4 17.5 3.9 3 1 1 4 4 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 WXG100 PF06013.12 gi|352682403|ref|YP_004892927.1| - 3 8.1 21.9 19 5.6 6.7 5.7 4 2 1 5 5 5 0 Proteins of 100 residues with WXG Laminin_II PF06009.12 gi|352682403|ref|YP_004892927.1| - 4.6 7.3 24.6 0.5 10.4 4.4 4.1 2 1 2 4 4 4 0 Laminin Domain II Rx_N PF18052.1 gi|352682403|ref|YP_004892927.1| - 8.2 6.8 34.6 0.13 12.6 2.1 5.2 3 2 1 4 4 4 0 Rx N-terminal domain eRF1_2 PF03464.15 gi|352682404|ref|YP_004892928.1| - 8.4e-30 103.8 0.1 2e-29 102.6 0.0 1.7 2 0 0 2 2 2 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|352682404|ref|YP_004892928.1| - 4.3e-14 52.9 0.2 1.2e-13 51.5 0.0 1.8 1 1 1 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|352682404|ref|YP_004892928.1| - 8.3e-12 45.5 0.1 1.5e-11 44.7 0.1 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_3 PF03465.15 gi|352682404|ref|YP_004892928.1| - 2.9e-10 40.6 2.4 4e-09 36.9 2.4 2.6 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|352682404|ref|YP_004892928.1| - 9.1e-06 25.7 0.0 1.5e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Ribosomal_L7Ae PF01248.26 gi|352682404|ref|YP_004892928.1| - 0.066 13.0 0.1 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family NTP_transf_2 PF01909.23 gi|352682406|ref|YP_004892930.1| - 5.8e-09 36.1 0.0 7e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|352682406|ref|YP_004892930.1| - 3.8e-06 26.9 0.0 4.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|352682406|ref|YP_004892930.1| - 0.0033 17.6 0.0 0.0047 17.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm XdhC_C PF13478.6 gi|352682407|ref|YP_004892931.1| - 1.6e-24 86.8 1.9 2.6e-24 86.1 1.9 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|352682407|ref|YP_004892931.1| - 0.0024 17.2 0.1 0.0042 16.5 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PUA_3 PF17785.1 gi|352682407|ref|YP_004892931.1| - 0.067 13.0 0.4 3.8 7.4 0.0 2.9 3 0 0 3 3 3 0 PUA-like domain DUF4143 PF13635.6 gi|352682408|ref|YP_004892932.1| - 1.7e-06 28.1 0.0 2.1e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) NUMOD1 PF07453.13 gi|352682408|ref|YP_004892932.1| - 0.041 14.1 0.0 0.072 13.4 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain HTH_AsnC-type PF13404.6 gi|352682408|ref|YP_004892932.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|352682408|ref|YP_004892932.1| - 0.11 12.0 0.0 0.27 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Acetyltransf_1 PF00583.25 gi|352682409|ref|YP_004892933.1| - 1.2e-16 61.0 0.6 1.5e-16 60.7 0.6 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|352682409|ref|YP_004892933.1| - 2.4e-13 50.1 0.0 3.3e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|352682409|ref|YP_004892933.1| - 1.4e-12 47.9 0.2 2.1e-12 47.3 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|352682409|ref|YP_004892933.1| - 9e-09 35.7 0.0 1e-08 35.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|352682409|ref|YP_004892933.1| - 6.3e-08 33.4 0.1 7.5e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|352682409|ref|YP_004892933.1| - 3e-06 27.1 0.1 5.9e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|352682409|ref|YP_004892933.1| - 6.7e-05 22.6 0.0 0.0001 22.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|352682409|ref|YP_004892933.1| - 0.0012 19.0 1.4 0.002 18.3 1.4 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|352682409|ref|YP_004892933.1| - 0.0091 15.7 0.9 0.012 15.3 0.9 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|352682409|ref|YP_004892933.1| - 0.015 15.4 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|352682409|ref|YP_004892933.1| - 0.022 14.8 0.0 0.049 13.7 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|352682409|ref|YP_004892933.1| - 0.16 11.5 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase DNA_pol_delta_4 PF04081.13 gi|352682410|ref|YP_004892934.1| - 0.19 12.1 0.0 0.28 11.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase delta, subunit 4 DUF3782 PF12644.7 gi|352682411|ref|YP_004892935.1| - 1.8e-15 56.9 11.5 3.5e-15 55.9 1.0 3.3 2 1 1 3 3 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|352682411|ref|YP_004892935.1| - 3.1e-10 39.8 0.8 3.1e-10 39.8 0.8 2.0 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily MCPsignal PF00015.21 gi|352682411|ref|YP_004892935.1| - 0.00078 19.3 0.2 0.0012 18.7 0.2 1.2 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Exonuc_VII_L PF02601.15 gi|352682411|ref|YP_004892935.1| - 0.001 18.7 0.4 0.0014 18.3 0.4 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit T7SS_ESX_EspC PF10824.8 gi|352682411|ref|YP_004892935.1| - 0.0026 18.2 0.1 0.01 16.3 0.0 1.9 1 1 1 2 2 2 1 Excreted virulence factor EspC, type VII ESX diderm DUF4559 PF15112.6 gi|352682411|ref|YP_004892935.1| - 0.004 16.9 0.5 0.0055 16.4 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) CREPT PF16566.5 gi|352682411|ref|YP_004892935.1| - 0.0041 17.3 0.9 0.0065 16.6 0.9 1.3 1 0 0 1 1 1 1 Cell-cycle alteration and expression-elevated protein in tumour GFD1 PF17331.2 gi|352682411|ref|YP_004892935.1| - 0.005 17.0 0.5 0.06 13.5 0.0 2.9 2 0 0 2 2 2 1 GFD1 mRNA transport factor Nup54 PF13874.6 gi|352682411|ref|YP_004892935.1| - 0.0081 16.3 2.4 0.43 10.7 0.1 2.4 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 KASH_CCD PF14662.6 gi|352682411|ref|YP_004892935.1| - 0.0084 16.0 3.6 0.013 15.4 3.6 1.2 1 0 0 1 1 1 1 Coiled-coil region of CCDC155 or KASH Apolipoprotein PF01442.18 gi|352682411|ref|YP_004892935.1| - 0.009 15.9 10.2 0.022 14.6 10.2 1.6 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF948 PF06103.11 gi|352682411|ref|YP_004892935.1| - 0.013 15.8 0.2 0.18 12.1 0.2 2.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) BAR_3_WASP_bdg PF10456.9 gi|352682411|ref|YP_004892935.1| - 0.017 14.6 0.0 0.024 14.1 0.0 1.2 1 0 0 1 1 1 0 WASP-binding domain of Sorting nexin protein RmuC PF02646.16 gi|352682411|ref|YP_004892935.1| - 0.023 13.9 0.5 0.055 12.6 0.5 1.6 1 1 0 1 1 1 0 RmuC family HemX PF04375.14 gi|352682411|ref|YP_004892935.1| - 0.041 13.2 0.2 0.056 12.7 0.2 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF16 PF01519.16 gi|352682411|ref|YP_004892935.1| - 0.043 14.3 0.3 0.099 13.1 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF1664 PF07889.12 gi|352682411|ref|YP_004892935.1| - 0.046 13.8 0.2 0.11 12.6 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) UPF0242 PF06785.11 gi|352682411|ref|YP_004892935.1| - 0.049 13.7 0.0 0.073 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Spc7 PF08317.11 gi|352682411|ref|YP_004892935.1| - 0.052 12.4 3.9 0.088 11.7 3.9 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein TBCC_N PF16752.5 gi|352682411|ref|YP_004892935.1| - 0.059 13.8 0.2 0.13 12.7 0.2 1.5 1 1 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain CorA PF01544.18 gi|352682411|ref|YP_004892935.1| - 0.061 12.6 0.7 0.091 12.1 0.7 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein KxDL PF10241.9 gi|352682411|ref|YP_004892935.1| - 0.062 13.6 0.5 0.36 11.1 0.2 2.2 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF3450 PF11932.8 gi|352682411|ref|YP_004892935.1| - 0.066 12.5 0.7 0.14 11.5 0.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF892 PF05974.12 gi|352682411|ref|YP_004892935.1| - 0.069 13.2 1.9 0.11 12.5 1.9 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF892) SlyX PF04102.12 gi|352682411|ref|YP_004892935.1| - 0.098 13.3 2.0 0.25 12.0 0.1 2.4 1 1 1 2 2 2 0 SlyX Collagen_mid PF15984.5 gi|352682411|ref|YP_004892935.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial collagen, middle region ARGLU PF15346.6 gi|352682411|ref|YP_004892935.1| - 0.14 12.0 12.7 0.54 10.1 12.8 1.8 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 BLOC1_2 PF10046.9 gi|352682411|ref|YP_004892935.1| - 0.16 12.3 0.6 1.6 9.1 0.3 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.11 gi|352682411|ref|YP_004892935.1| - 0.18 12.4 0.9 1.5 9.4 1.2 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal MPS2 PF17060.5 gi|352682411|ref|YP_004892935.1| - 0.19 11.0 0.4 0.31 10.2 0.4 1.4 1 1 0 1 1 1 0 Monopolar spindle protein 2 FH2 PF02181.23 gi|352682411|ref|YP_004892935.1| - 0.24 10.5 1.0 0.33 10.0 1.0 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain YvrJ PF12841.7 gi|352682411|ref|YP_004892935.1| - 0.28 10.8 2.0 2.5 7.7 0.0 2.9 3 0 0 3 3 3 0 YvrJ protein family ATG16 PF08614.11 gi|352682411|ref|YP_004892935.1| - 0.31 11.2 5.9 0.56 10.4 5.9 1.4 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DASH_Spc19 PF08287.11 gi|352682411|ref|YP_004892935.1| - 0.39 10.6 4.9 0.77 9.6 4.9 1.5 1 1 0 1 1 1 0 Spc19 phiKZ_IP PF12699.7 gi|352682411|ref|YP_004892935.1| - 0.41 9.8 3.3 1.8 7.6 0.6 2.2 1 1 1 2 2 2 0 phiKZ-like phage internal head proteins TMF_TATA_bd PF12325.8 gi|352682411|ref|YP_004892935.1| - 0.88 9.8 8.4 1.5 9.1 5.8 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding FUSC PF04632.12 gi|352682411|ref|YP_004892935.1| - 1 7.8 3.6 1.4 7.3 3.6 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Med21 PF11221.8 gi|352682411|ref|YP_004892935.1| - 1.7 8.9 3.9 3 8.1 3.9 1.4 1 1 0 1 1 1 0 Subunit 21 of Mediator complex CcdA PF07362.12 gi|352682411|ref|YP_004892935.1| - 1.8 9.1 10.3 60 4.2 0.0 4.3 3 1 1 4 4 3 0 Post-segregation antitoxin CcdA ATP-grasp PF02222.22 gi|352682412|ref|YP_004892936.1| - 0.048 13.2 0.0 0.05 13.2 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain HEPN PF05168.14 gi|352682414|ref|YP_004892938.1| - 1.4e-31 109.1 1.4 1.5e-31 108.9 1.4 1.0 1 0 0 1 1 1 1 HEPN domain NRBF2_MIT PF17169.4 gi|352682414|ref|YP_004892938.1| - 0.0027 17.9 1.2 0.025 14.8 0.2 2.0 1 1 1 2 2 2 1 MIT domain of nuclear receptor-binding factor 2 ClpB_D2-small PF10431.9 gi|352682414|ref|YP_004892938.1| - 0.051 13.6 0.1 0.1 12.7 0.1 1.5 1 1 1 2 2 2 0 C-terminal, D2-small domain, of ClpB protein DUF726 PF05277.12 gi|352682414|ref|YP_004892938.1| - 0.11 11.5 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) NTP_transf_2 PF01909.23 gi|352682415|ref|YP_004892939.1| - 5.6e-08 33.0 0.0 8.7e-08 32.4 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|352682415|ref|YP_004892939.1| - 2.5e-07 30.7 0.0 3.9e-07 30.1 0.0 1.5 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase TauE PF01925.19 gi|352682416|ref|YP_004892940.1| - 2.2e-09 37.3 13.7 2.5e-09 37.1 13.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3487 PF11990.8 gi|352682416|ref|YP_004892940.1| - 8.8 6.3 9.1 0.72 9.8 1.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3487) PaREP1 PF05942.11 gi|352682417|ref|YP_004892941.1| - 8.1e-23 80.5 8.6 1.2e-22 80.0 8.6 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|352682417|ref|YP_004892941.1| - 0.021 15.0 2.2 0.035 14.2 2.2 1.4 1 0 0 1 1 1 0 HEPN domain RHH_5 PF07878.11 gi|352682417|ref|YP_004892941.1| - 0.072 13.0 0.2 0.2 11.6 0.2 1.7 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 DnaB_bind PF10410.9 gi|352682417|ref|YP_004892941.1| - 0.087 13.0 2.1 15 5.8 0.1 3.3 3 0 0 3 3 3 0 DnaB-helicase binding domain of primase RyR PF02026.16 gi|352682417|ref|YP_004892941.1| - 0.12 12.6 1.3 0.21 11.8 0.4 1.8 2 0 0 2 2 2 0 RyR domain FHIPEP PF00771.20 gi|352682419|ref|YP_004892943.1| - 0.11 10.9 0.8 0.17 10.3 0.8 1.3 1 0 0 1 1 1 0 FHIPEP family Cas_DxTHG PF09455.10 gi|352682420|ref|YP_004892944.1| - 1.5e-15 57.7 0.0 4.4e-15 56.1 0.0 1.7 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Csm1_B PF18211.1 gi|352682422|ref|YP_004892946.1| - 7.6e-06 25.7 0.6 3.3e-05 23.6 0.1 2.3 3 0 0 3 3 3 1 Csm1 subunit domain B HD PF01966.22 gi|352682422|ref|YP_004892946.1| - 0.00014 22.1 0.0 0.00054 20.2 0.0 2.0 1 0 0 1 1 1 1 HD domain DUF3222 PF11519.8 gi|352682422|ref|YP_004892946.1| - 0.1 12.9 0.7 2.6 8.4 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3222) RAMPs PF03787.15 gi|352682423|ref|YP_004892947.1| - 0.0014 18.7 0.0 0.0016 18.5 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily He_PIG_assoc PF10632.9 gi|352682423|ref|YP_004892947.1| - 0.16 11.7 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 He_PIG associated, NEW1 domain of bacterial glycohydrolase RAMPs PF03787.15 gi|352682425|ref|YP_004892949.1| - 3.6e-08 33.7 0.0 9.1e-08 32.4 0.0 1.6 1 1 0 1 1 1 1 RAMP superfamily Csm2_III-A PF03750.13 gi|352682426|ref|YP_004892950.1| - 0.0013 19.5 0.1 0.002 19.0 0.1 1.3 1 0 0 1 1 1 1 Csm2 Type III-A Cation_ATPase_N PF00690.26 gi|352682426|ref|YP_004892950.1| - 0.049 13.3 0.1 0.15 11.8 0.1 1.7 2 0 0 2 2 2 0 Cation transporter/ATPase, N-terminus DUF676 PF05057.14 gi|352682427|ref|YP_004892951.1| - 0.1 12.1 0.0 0.62 9.5 0.0 1.9 2 0 0 2 2 2 0 Putative serine esterase (DUF676) AAA_15 PF13175.6 gi|352682428|ref|YP_004892952.1| - 3.9e-05 23.5 0.0 4.2e-05 23.4 0.0 1.0 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|352682428|ref|YP_004892952.1| - 3.9e-05 23.6 0.0 4.5e-05 23.4 0.0 1.0 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system Cas_APE2256 PF09651.10 gi|352682430|ref|YP_004892954.1| - 1.7e-33 115.4 0.0 2.6e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) AAA_15 PF13175.6 gi|352682431|ref|YP_004892955.1| - 0.00047 20.0 0.0 0.0005 19.9 0.0 1.0 1 0 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|352682431|ref|YP_004892955.1| - 0.0019 18.8 0.1 0.0021 18.6 0.1 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|352682431|ref|YP_004892955.1| - 0.0073 15.8 0.2 0.0077 15.7 0.2 1.0 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|352682431|ref|YP_004892955.1| - 0.018 14.9 0.0 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|352682431|ref|YP_004892955.1| - 0.029 14.1 0.0 0.035 13.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF815 PF05673.13 gi|352682431|ref|YP_004892955.1| - 0.043 13.0 0.0 0.048 12.8 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|352682431|ref|YP_004892955.1| - 0.14 12.7 0.0 0.14 12.6 0.0 1.1 1 0 0 1 1 1 0 ABC transporter Cas_DxTHG PF09455.10 gi|352682433|ref|YP_004892957.1| - 1.5e-08 34.6 0.0 1.1e-07 31.7 0.0 2.2 2 1 0 2 2 2 1 CRISPR-associated (Cas) DxTHG family Cas_Cas4 PF01930.17 gi|352682434|ref|YP_004892958.1| - 1.1e-15 58.1 0.0 1.3e-15 57.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|352682434|ref|YP_004892958.1| - 1.2e-07 31.9 0.9 4.2e-07 30.1 0.2 1.8 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily CRISPR_Cas2 PF09827.9 gi|352682435|ref|YP_004892959.1| - 2.9e-14 53.0 0.0 5.2e-14 52.2 0.0 1.4 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|352682435|ref|YP_004892959.1| - 2.8e-13 49.6 0.0 3.7e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Csa1 PF06023.12 gi|352682437|ref|YP_004892961.1| - 3.4e-91 305.6 0.0 3.8e-91 305.5 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|352682437|ref|YP_004892961.1| - 0.013 15.4 0.1 1.2 9.0 0.1 2.1 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily TrmB PF01978.19 gi|352682438|ref|YP_004892962.1| - 0.00026 20.8 0.0 0.00063 19.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|352682438|ref|YP_004892962.1| - 0.00057 19.4 0.0 0.0015 18.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|352682438|ref|YP_004892962.1| - 0.00078 19.4 0.1 0.003 17.5 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|352682438|ref|YP_004892962.1| - 0.0018 18.1 0.7 0.0079 16.0 0.0 2.5 3 1 0 3 3 3 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|352682438|ref|YP_004892962.1| - 0.0047 16.9 0.0 0.01 15.8 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|352682438|ref|YP_004892962.1| - 0.0067 16.7 0.0 0.027 14.8 0.1 2.0 2 1 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|352682438|ref|YP_004892962.1| - 0.056 13.3 2.0 0.41 10.6 1.0 2.7 2 1 0 2 2 2 0 MarR family HTH_36 PF13730.6 gi|352682438|ref|YP_004892962.1| - 0.063 13.2 0.0 0.16 11.9 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|352682438|ref|YP_004892962.1| - 0.074 12.9 0.0 0.57 10.1 0.0 2.6 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|352682438|ref|YP_004892962.1| - 0.094 12.9 0.2 0.54 10.4 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|352682438|ref|YP_004892962.1| - 0.12 12.4 0.1 0.69 9.9 0.1 2.1 2 0 0 2 2 2 0 HTH domain HTH_23 PF13384.6 gi|352682438|ref|YP_004892962.1| - 0.13 12.1 1.1 1.9 8.4 0.0 2.8 3 0 0 3 3 3 0 Homeodomain-like domain DUF977 PF06163.11 gi|352682438|ref|YP_004892962.1| - 0.18 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF4315 PF14193.6 gi|352682439|ref|YP_004892963.1| - 0.0046 16.9 0.8 0.0075 16.3 0.3 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4315) VHS PF00790.19 gi|352682439|ref|YP_004892963.1| - 0.052 13.4 0.1 0.09 12.6 0.0 1.5 2 0 0 2 2 2 0 VHS domain ThrE PF06738.12 gi|352682439|ref|YP_004892963.1| - 0.29 10.5 0.2 0.63 9.4 0.1 1.6 2 0 0 2 2 2 0 Putative threonine/serine exporter DevR PF01905.16 gi|352682440|ref|YP_004892964.1| - 3.4e-56 190.3 0.0 4.1e-56 190.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.10 gi|352682441|ref|YP_004892965.1| - 0.00011 22.1 0.2 0.00017 21.5 0.2 1.5 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.29 gi|352682442|ref|YP_004892966.1| - 8.6e-15 54.9 0.0 1.3e-13 51.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|352682442|ref|YP_004892966.1| - 6.5e-10 39.3 0.1 1.2e-09 38.4 0.1 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|352682442|ref|YP_004892966.1| - 5e-05 23.4 0.0 0.00012 22.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|352682442|ref|YP_004892966.1| - 0.17 12.2 0.0 0.64 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain HD PF01966.22 gi|352682443|ref|YP_004892967.1| - 4.5e-06 26.9 1.3 0.00037 20.7 0.5 2.2 2 0 0 2 2 2 2 HD domain DUF3667 PF12412.8 gi|352682443|ref|YP_004892967.1| - 0.013 15.0 0.3 0.031 13.8 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3667) HD_6 PF18019.1 gi|352682443|ref|YP_004892967.1| - 0.066 13.3 0.4 0.27 11.3 0.4 2.0 1 1 0 1 1 1 0 HD domain Cas_Csa4 PF09703.10 gi|352682444|ref|YP_004892968.1| - 8.8e-36 123.9 0.0 1.3e-35 123.4 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa4) ABC_tran PF00005.27 gi|352682445|ref|YP_004892969.1| - 0.2 12.2 0.0 0.33 11.5 0.0 1.3 1 0 0 1 1 1 0 ABC transporter NosD PF05048.13 gi|352682450|ref|YP_004892974.1| - 7.1e-27 94.2 0.5 4.2e-17 62.2 0.0 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|352682450|ref|YP_004892974.1| - 2.5e-25 89.1 25.4 1.6e-11 44.3 4.2 2.9 1 1 2 3 3 3 3 Right handed beta helix region 2-Hacid_dh_C PF02826.19 gi|352682451|ref|YP_004892975.1| - 3.4e-34 117.8 0.0 5.1e-34 117.2 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|352682451|ref|YP_004892975.1| - 2.4e-13 49.9 0.0 2.9e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|352682451|ref|YP_004892975.1| - 0.0096 16.1 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|352682451|ref|YP_004892975.1| - 0.033 14.3 0.0 0.96 9.5 0.0 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|352682451|ref|YP_004892975.1| - 0.036 13.3 0.0 2.8 7.2 0.1 2.4 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|352682451|ref|YP_004892975.1| - 0.13 12.7 0.0 0.33 11.4 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding NurA PF09376.10 gi|352682452|ref|YP_004892976.1| - 7.9e-09 35.5 0.0 1.9e-08 34.3 0.0 1.6 1 1 0 1 1 1 1 NurA domain DUF853 PF05872.12 gi|352682454|ref|YP_004892978.1| - 2e-15 56.4 0.3 1.2e-06 27.4 0.1 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|352682454|ref|YP_004892978.1| - 2.5e-11 44.1 0.0 1e-10 42.1 0.0 1.8 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|352682454|ref|YP_004892978.1| - 1.1e-07 32.2 0.0 0.0043 17.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|352682454|ref|YP_004892978.1| - 7.5e-07 28.8 0.1 9.9e-05 21.8 0.0 2.2 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|352682454|ref|YP_004892978.1| - 9.7e-06 24.7 0.0 1.8e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.29 gi|352682454|ref|YP_004892978.1| - 2.2e-05 24.9 0.2 0.14 12.6 0.1 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|352682454|ref|YP_004892978.1| - 0.0001 22.7 0.5 0.0027 18.1 0.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.7 gi|352682454|ref|YP_004892978.1| - 0.00017 20.7 0.0 0.052 12.5 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain NACHT PF05729.12 gi|352682454|ref|YP_004892978.1| - 0.002 18.1 0.0 0.0039 17.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain T2SSE PF00437.20 gi|352682454|ref|YP_004892978.1| - 0.0025 16.9 0.0 0.0044 16.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.15 gi|352682454|ref|YP_004892978.1| - 0.0045 17.0 0.0 0.026 14.5 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|352682454|ref|YP_004892978.1| - 0.005 16.1 0.2 0.46 9.7 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|352682454|ref|YP_004892978.1| - 0.0061 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region Zot PF05707.12 gi|352682454|ref|YP_004892978.1| - 0.012 15.2 0.0 0.077 12.6 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Mg_chelatase PF01078.21 gi|352682454|ref|YP_004892978.1| - 0.013 14.9 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|352682454|ref|YP_004892978.1| - 0.027 14.1 0.7 2.4 7.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|352682454|ref|YP_004892978.1| - 0.039 13.7 0.4 0.14 11.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|352682454|ref|YP_004892978.1| - 0.039 14.0 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|352682454|ref|YP_004892978.1| - 0.075 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.22 gi|352682454|ref|YP_004892978.1| - 0.076 12.6 0.2 0.15 11.6 0.1 1.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|352682454|ref|YP_004892978.1| - 0.082 12.2 0.1 0.19 11.0 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|352682454|ref|YP_004892978.1| - 0.2 12.2 0.0 0.42 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|352682454|ref|YP_004892978.1| - 0.22 10.8 0.0 0.37 10.1 0.0 1.3 1 0 0 1 1 1 0 KaiC MFS_1 PF07690.16 gi|352682455|ref|YP_004892979.1| - 7.1e-16 58.1 59.9 1.1e-15 57.4 59.9 1.3 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|352682455|ref|YP_004892979.1| - 7.4e-16 58.0 33.2 2.6e-14 52.9 14.7 2.3 1 1 0 2 2 2 2 Sugar (and other) transporter Pyr_redox_2 PF07992.14 gi|352682456|ref|YP_004892980.1| - 3.1e-54 184.2 1.3 5.2e-54 183.5 1.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352682456|ref|YP_004892980.1| - 2.6e-19 69.5 7.3 5.4e-16 58.9 1.6 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|352682456|ref|YP_004892980.1| - 4.4e-14 52.5 0.0 1.5e-10 40.8 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|352682456|ref|YP_004892980.1| - 7.3e-06 25.4 0.7 4.1e-05 22.9 0.0 2.3 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|352682456|ref|YP_004892980.1| - 1.2e-05 25.5 3.9 0.0039 17.4 0.3 3.1 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|352682456|ref|YP_004892980.1| - 2.3e-05 24.4 2.7 0.64 10.0 0.1 3.7 3 0 0 3 3 3 2 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|352682456|ref|YP_004892980.1| - 0.00014 20.7 2.2 0.061 12.0 0.5 2.9 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_7 PF13241.6 gi|352682456|ref|YP_004892980.1| - 0.00046 20.6 1.2 0.92 10.0 0.3 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|352682456|ref|YP_004892980.1| - 0.0014 17.8 1.0 0.0014 17.8 1.0 3.2 3 0 0 3 3 3 1 FAD binding domain Trp_halogenase PF04820.14 gi|352682456|ref|YP_004892980.1| - 0.014 14.3 0.7 0.024 13.5 0.2 1.6 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.22 gi|352682456|ref|YP_004892980.1| - 0.023 13.8 0.3 0.095 11.8 0.2 2.1 3 0 0 3 3 3 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|352682456|ref|YP_004892980.1| - 0.05 13.0 0.4 0.2 11.0 0.0 2.0 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LpxI_N PF17930.1 gi|352682456|ref|YP_004892980.1| - 0.066 13.1 0.5 0.2 11.6 0.4 1.8 1 1 1 2 2 2 0 LpxI N-terminal domain TrkA_N PF02254.18 gi|352682456|ref|YP_004892980.1| - 0.071 13.4 3.7 6.1 7.1 0.1 3.1 3 0 0 3 3 3 0 TrkA-N domain Usp PF00582.26 gi|352682456|ref|YP_004892980.1| - 0.095 13.2 2.4 1.9 9.0 1.0 2.8 1 1 1 2 2 2 0 Universal stress protein family AlaDh_PNT_C PF01262.21 gi|352682456|ref|YP_004892980.1| - 0.58 9.4 7.9 0.33 10.2 1.2 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|352682456|ref|YP_004892980.1| - 1.1 8.2 3.3 0.34 9.9 0.3 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein Shikimate_DH PF01488.20 gi|352682456|ref|YP_004892980.1| - 3.3 7.8 4.0 11 6.0 0.1 2.3 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|352682456|ref|YP_004892980.1| - 7.2 6.9 5.1 19 5.5 0.1 2.9 3 0 0 3 3 3 0 Saccharopine dehydrogenase NADP binding domain Molybdopterin PF00384.22 gi|352682457|ref|YP_004892981.1| - 4e-92 309.4 0.0 4.9e-92 309.1 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|352682457|ref|YP_004892981.1| - 3.3e-25 88.3 0.1 9e-25 86.9 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|352682457|ref|YP_004892981.1| - 1.4e-14 53.9 0.4 1.4e-14 53.9 0.4 2.1 2 0 0 2 2 1 1 2Fe-2S iron-sulfur cluster binding domain Molybdop_Fe4S4 PF04879.16 gi|352682457|ref|YP_004892981.1| - 2.1e-14 53.2 1.2 2.1e-14 53.2 1.2 2.6 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2 PF00111.27 gi|352682457|ref|YP_004892981.1| - 1.4e-08 34.6 0.5 1.4e-08 34.6 0.5 2.4 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|352682457|ref|YP_004892981.1| - 2.4e-08 33.5 19.5 1.8e-06 27.5 3.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352682457|ref|YP_004892981.1| - 5.4e-07 29.4 15.7 0.00011 22.1 3.8 3.4 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352682457|ref|YP_004892981.1| - 1.9e-05 24.6 11.5 1.9e-05 24.6 11.5 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|352682457|ref|YP_004892981.1| - 2.8e-05 24.2 7.5 2.8e-05 24.2 7.5 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352682457|ref|YP_004892981.1| - 4.8e-05 23.4 11.5 4.8e-05 23.4 11.5 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682457|ref|YP_004892981.1| - 0.0003 21.3 14.2 0.0003 21.3 14.2 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer2_3 PF13085.6 gi|352682457|ref|YP_004892981.1| - 0.0013 18.8 0.1 0.004 17.2 0.1 1.8 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peripla_BP_6 PF13458.6 gi|352682457|ref|YP_004892981.1| - 0.0025 17.5 0.1 0.082 12.6 0.0 2.3 2 0 0 2 2 2 1 Periplasmic binding protein Fer4_2 PF12797.7 gi|352682457|ref|YP_004892981.1| - 0.005 16.8 5.0 0.005 16.8 5.0 3.7 5 0 0 5 5 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|352682457|ref|YP_004892981.1| - 0.0066 16.9 4.2 0.0066 16.9 4.2 3.3 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352682457|ref|YP_004892981.1| - 0.0074 17.2 6.7 0.0074 17.2 6.7 3.1 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|352682457|ref|YP_004892981.1| - 0.015 15.8 15.3 0.045 14.3 0.3 3.0 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352682457|ref|YP_004892981.1| - 0.4 11.2 16.6 0.024 15.0 10.2 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain zf-ribbon_3 PF13248.6 gi|352682457|ref|YP_004892981.1| - 2 7.9 6.2 1.7 8.2 0.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_15 PF13459.6 gi|352682457|ref|YP_004892981.1| - 2.8 8.8 6.8 7.6 7.4 0.7 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|352682457|ref|YP_004892981.1| - 5.3 7.3 13.7 0.94 9.7 4.2 2.8 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|352682457|ref|YP_004892981.1| - 6.8 7.6 14.2 15 6.5 4.0 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain Complex1_51K PF01512.17 gi|352682458|ref|YP_004892982.1| - 6.9e-40 136.4 0.0 1.1e-39 135.8 0.0 1.3 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|352682458|ref|YP_004892982.1| - 1.3e-27 95.7 0.6 2.4e-27 94.8 0.6 1.5 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 2Fe-2S_thioredx PF01257.19 gi|352682458|ref|YP_004892982.1| - 1.5e-08 34.6 0.0 1.1e-07 31.8 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin SLBB PF10531.9 gi|352682458|ref|YP_004892982.1| - 1.1e-06 28.4 0.2 2.7e-06 27.1 0.2 1.7 1 0 0 1 1 1 1 SLBB domain TPR_19 PF14559.6 gi|352682458|ref|YP_004892982.1| - 0.96 10.0 4.0 20 5.8 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat Cons_hypoth698 PF03601.14 gi|352682459|ref|YP_004892983.1| - 1.5e-22 79.9 20.6 3.7e-22 78.6 20.6 1.6 1 1 0 1 1 1 1 Conserved hypothetical protein 698 Stevor PF17410.2 gi|352682459|ref|YP_004892983.1| - 1.8 8.0 12.4 4.1 6.9 2.5 2.3 2 0 0 2 2 2 0 Subtelomeric Variable Open Reading frame CRISPR_Cas6 PF10040.9 gi|352682460|ref|YP_004892984.1| - 8e-16 58.5 0.8 1.7e-15 57.4 0.7 1.6 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 WW_like PF17890.1 gi|352682462|ref|YP_004892986.1| - 0.012 15.7 0.0 0.023 14.8 0.0 1.4 1 0 0 1 1 1 0 Peptidoglycan hydrolase LytB WW-like domain OrfB_Zn_ribbon PF07282.11 gi|352682463|ref|YP_004892987.1| - 2e-10 40.4 0.0 4.2e-10 39.4 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|352682463|ref|YP_004892987.1| - 0.00065 19.3 2.6 0.0013 18.3 2.6 1.4 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.6 gi|352682463|ref|YP_004892987.1| - 0.0014 18.5 0.4 0.0022 17.9 0.4 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|352682463|ref|YP_004892987.1| - 0.011 15.8 0.2 0.019 15.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|352682463|ref|YP_004892987.1| - 0.012 15.6 0.3 0.09 12.8 0.1 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|352682463|ref|YP_004892987.1| - 0.05 13.0 1.8 4.2 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.22 gi|352682463|ref|YP_004892987.1| - 0.066 13.1 0.3 0.12 12.3 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ISL3 PF14690.6 gi|352682463|ref|YP_004892987.1| - 0.088 13.5 4.8 4.5 8.0 0.4 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.6 gi|352682463|ref|YP_004892987.1| - 0.18 11.9 0.9 6.5 6.8 0.1 2.6 1 1 1 2 2 2 0 CpXC protein DNA_ligase_ZBD PF03119.16 gi|352682463|ref|YP_004892987.1| - 0.18 11.9 2.0 5.8 7.0 1.1 2.6 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|352682463|ref|YP_004892987.1| - 0.21 11.2 7.1 0.078 12.7 3.9 1.9 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|352682463|ref|YP_004892987.1| - 0.32 10.8 3.0 0.94 9.3 3.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|352682463|ref|YP_004892987.1| - 0.53 10.3 3.5 11 6.1 0.5 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.6 gi|352682463|ref|YP_004892987.1| - 1.3 9.1 4.0 15 5.6 4.0 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|352682463|ref|YP_004892987.1| - 1.9 8.7 5.7 36 4.6 5.6 2.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|352682463|ref|YP_004892987.1| - 2.8 7.8 5.1 0.94 9.3 0.3 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger PFK PF00365.20 gi|352682465|ref|YP_004892989.1| - 1.1e-89 300.6 0.0 1.3e-89 300.4 0.0 1.0 1 0 0 1 1 1 1 Phosphofructokinase Bmp PF02608.14 gi|352682465|ref|YP_004892989.1| - 0.054 12.5 0.0 0.079 11.9 0.0 1.2 1 0 0 1 1 1 0 ABC transporter substrate-binding protein PnrA-like DeoC PF01791.9 gi|352682466|ref|YP_004892990.1| - 4.3e-38 131.2 0.0 5.1e-38 131.0 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase GTP_EFTU_D2 PF03144.25 gi|352682467|ref|YP_004892991.1| - 0.045 14.1 0.1 0.097 13.1 0.1 1.6 1 0 0 1 1 1 0 Elongation factor Tu domain 2 DUF1641 PF07849.11 gi|352682468|ref|YP_004892992.1| - 1.4e-15 56.9 0.7 2.6e-15 56.0 0.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HALZ PF02183.18 gi|352682468|ref|YP_004892992.1| - 0.0066 16.6 0.7 0.013 15.7 0.7 1.4 1 0 0 1 1 1 1 Homeobox associated leucine zipper APC_N_CC PF16689.5 gi|352682468|ref|YP_004892992.1| - 0.0089 16.1 0.4 0.021 14.8 0.4 1.7 1 0 0 1 1 1 1 Coiled-coil N-terminus of APC, dimerisation domain Pyr_redox_2 PF07992.14 gi|352682469|ref|YP_004892993.1| - 2.9e-18 66.1 0.0 9.9e-18 64.4 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352682469|ref|YP_004892993.1| - 2e-06 28.3 0.0 0.1 13.2 0.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|352682469|ref|YP_004892993.1| - 0.00034 20.3 0.0 0.78 9.3 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|352682469|ref|YP_004892993.1| - 0.0012 19.0 0.2 0.013 15.7 0.0 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|352682469|ref|YP_004892993.1| - 0.0064 16.5 0.1 0.85 9.6 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding DUF4926 PF16277.5 gi|352682469|ref|YP_004892993.1| - 0.019 14.3 0.2 0.047 13.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4926) Trp_halogenase PF04820.14 gi|352682469|ref|YP_004892993.1| - 0.049 12.5 0.0 0.073 11.9 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase NAD_synthase PF02540.17 gi|352682472|ref|YP_004892996.1| - 4.1e-76 255.3 0.0 4.8e-76 255.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|352682472|ref|YP_004892996.1| - 1.2e-05 24.3 0.0 0.012 14.4 0.0 2.4 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|352682472|ref|YP_004892996.1| - 2.6e-05 23.8 0.0 5.1e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|352682472|ref|YP_004892996.1| - 0.0002 21.2 0.0 0.00024 20.9 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase KORA PF16509.5 gi|352682472|ref|YP_004892996.1| - 0.027 14.7 0.0 0.12 12.6 0.0 2.0 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor ATP_bind_3 PF01171.20 gi|352682472|ref|YP_004892996.1| - 0.04 13.7 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 PP-loop family P-II PF00543.22 gi|352682473|ref|YP_004892997.1| - 7.4e-27 93.9 1.2 8.2e-27 93.8 1.2 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF190 PF02641.15 gi|352682473|ref|YP_004892997.1| - 0.00015 22.0 0.1 0.00019 21.7 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CdAMP_rec PF06153.11 gi|352682473|ref|YP_004892997.1| - 0.016 15.4 1.3 0.32 11.2 0.6 2.4 1 1 1 2 2 2 0 Cyclic-di-AMP receptor HisG_C PF08029.11 gi|352682473|ref|YP_004892997.1| - 0.13 12.4 0.5 0.78 9.9 0.1 2.0 2 0 0 2 2 2 0 HisG, C-terminal domain Ammonium_transp PF00909.21 gi|352682474|ref|YP_004892998.1| - 2.7e-70 237.1 26.6 3.9e-70 236.6 26.6 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF87 PF01935.17 gi|352682475|ref|YP_004892999.1| - 1.2e-36 127.0 0.0 1.7e-36 126.4 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|352682475|ref|YP_004892999.1| - 0.00077 18.5 0.0 0.023 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.9 gi|352682475|ref|YP_004892999.1| - 0.11 11.4 0.0 0.23 10.3 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|352682475|ref|YP_004892999.1| - 0.17 11.2 0.0 0.59 9.4 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_15 PF13175.6 gi|352682476|ref|YP_004893000.1| - 4.3e-10 39.8 0.0 4.1e-07 30.1 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|352682476|ref|YP_004893000.1| - 1.1e-09 38.5 0.1 0.00034 20.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|352682476|ref|YP_004893000.1| - 9e-08 32.9 0.0 1.3e-07 32.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352682476|ref|YP_004893000.1| - 0.00011 21.9 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|352682476|ref|YP_004893000.1| - 0.00049 19.6 0.0 0.0007 19.1 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_tran PF00005.27 gi|352682476|ref|YP_004893000.1| - 0.0052 17.3 0.1 0.033 14.7 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_27 PF13514.6 gi|352682476|ref|YP_004893000.1| - 0.007 16.0 0.1 0.016 14.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain DUF2813 PF11398.8 gi|352682476|ref|YP_004893000.1| - 0.029 13.6 0.1 0.05 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_16 PF13191.6 gi|352682476|ref|YP_004893000.1| - 0.067 13.6 1.3 0.5 10.7 1.3 2.0 1 1 0 1 1 1 0 AAA ATPase domain Ammonium_transp PF00909.21 gi|352682477|ref|YP_004893001.1| - 4.1e-90 302.4 31.2 4.9e-90 302.1 31.2 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family PIN_9 PF18477.1 gi|352682479|ref|YP_004893003.1| - 0.11 12.9 0.0 0.19 12.1 0.0 1.5 1 1 1 2 2 2 0 PIN like domain Metallophos_2 PF12850.7 gi|352682480|ref|YP_004893004.1| - 1.1e-18 68.0 0.0 2e-18 67.2 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|352682480|ref|YP_004893004.1| - 8.2e-12 46.1 0.0 2.4e-11 44.5 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|352682480|ref|YP_004893004.1| - 9e-10 38.3 0.3 1.8e-09 37.3 0.2 1.6 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Thermopsin PF05317.11 gi|352682481|ref|YP_004893005.1| - 1.6e-64 217.9 3.3 3.2e-64 216.9 3.3 1.5 1 0 0 1 1 1 1 Thermopsin ASH PF15780.5 gi|352682481|ref|YP_004893005.1| - 3e-10 40.2 3.5 0.14 12.4 0.1 6.9 7 0 0 7 7 7 3 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin SSB PF00436.25 gi|352682481|ref|YP_004893005.1| - 0.00018 21.5 0.3 21 5.2 0.0 5.8 7 0 0 7 7 7 1 Single-strand binding protein family DUF22 PF01629.16 gi|352682481|ref|YP_004893005.1| - 0.00077 19.1 0.0 23 4.7 0.0 4.4 4 0 0 4 4 4 2 Domain of unknown function DUF22 MaoC_dehydrat_N PF13452.6 gi|352682481|ref|YP_004893005.1| - 0.042 14.0 0.0 3.8 7.7 0.0 3.7 5 0 0 5 5 5 0 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|352682481|ref|YP_004893005.1| - 0.19 12.1 1.1 1.9 8.9 0.0 3.1 3 0 0 3 3 3 0 Thioesterase superfamily Yip1 PF04893.17 gi|352682482|ref|YP_004893006.1| - 0.00013 21.7 7.0 0.00018 21.3 7.0 1.3 1 0 0 1 1 1 1 Yip1 domain Cation_efflux PF01545.21 gi|352682482|ref|YP_004893006.1| - 0.001 18.9 2.4 0.0011 18.8 2.4 1.0 1 0 0 1 1 1 1 Cation efflux family DUF2207 PF09972.9 gi|352682482|ref|YP_004893006.1| - 4 6.1 4.8 4.4 6.0 4.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AFOR_C PF01314.18 gi|352682483|ref|YP_004893007.1| - 7.2e-92 308.3 0.0 9.2e-92 308.0 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|352682483|ref|YP_004893007.1| - 5.1e-66 222.3 0.2 1.1e-65 221.2 0.2 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Lyase_1 PF00206.20 gi|352682484|ref|YP_004893008.1| - 7e-82 275.3 0.0 9e-82 274.9 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|352682484|ref|YP_004893008.1| - 8.2e-05 22.9 0.0 0.0014 19.0 0.0 2.5 2 0 0 2 2 2 1 Fumarase C C-terminus HCV_core PF01542.18 gi|352682484|ref|YP_004893008.1| - 0.064 13.6 0.2 0.24 11.8 0.2 2.0 1 0 0 1 1 1 0 Hepatitis C virus core protein Sugar_tr PF00083.24 gi|352682485|ref|YP_004893009.1| - 1.9e-23 83.1 13.8 1.9e-23 83.1 13.8 1.3 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|352682485|ref|YP_004893009.1| - 1.4e-22 80.1 31.7 1.8e-22 79.7 31.7 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily EMP70 PF02990.16 gi|352682485|ref|YP_004893009.1| - 1.8 7.1 9.3 0.25 9.9 5.3 1.5 1 1 0 1 1 1 0 Endomembrane protein 70 Sugar_tr PF00083.24 gi|352682486|ref|YP_004893010.1| - 1.4e-05 24.2 3.6 1.5e-05 24.1 3.6 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter HlyIII PF03006.20 gi|352682486|ref|YP_004893010.1| - 0.037 13.7 2.9 0.065 12.9 2.9 1.2 1 1 0 1 1 1 0 Haemolysin-III related MFS_1 PF07690.16 gi|352682486|ref|YP_004893010.1| - 0.039 12.9 14.8 0.058 12.3 14.8 1.3 1 0 0 1 1 1 0 Major Facilitator Superfamily ABC2_membrane_5 PF13346.6 gi|352682486|ref|YP_004893010.1| - 0.07 12.7 2.7 0.046 13.3 1.2 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein TraL PF07178.11 gi|352682486|ref|YP_004893010.1| - 0.66 10.5 6.9 1.1 9.8 1.5 2.3 1 1 1 2 2 2 0 TraL protein Amastin PF07344.11 gi|352682486|ref|YP_004893010.1| - 6.7 6.5 9.7 0.47 10.3 4.2 1.7 2 0 0 2 2 2 0 Amastin surface glycoprotein Diphthamide_syn PF01866.17 gi|352682487|ref|YP_004893011.1| - 3.2e-19 69.5 0.0 1.7e-12 47.5 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein CoA_binding_2 PF13380.6 gi|352682487|ref|YP_004893011.1| - 0.033 14.7 0.0 0.16 12.4 0.0 2.0 2 0 0 2 2 2 0 CoA binding domain Peptidase_M1 PF01433.20 gi|352682488|ref|YP_004893012.1| - 1.7e-73 246.8 0.0 2.2e-73 246.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|352682488|ref|YP_004893012.1| - 6.5e-28 98.2 0.0 1.2e-27 97.3 0.0 1.5 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 gi|352682488|ref|YP_004893012.1| - 1.7e-23 83.6 0.0 2.5e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 ERAP1-like C-terminal domain AAA_31 PF13614.6 gi|352682490|ref|YP_004893014.1| - 2.5e-19 69.9 0.0 3.5e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|352682490|ref|YP_004893014.1| - 1.4e-12 47.7 0.0 2e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|352682490|ref|YP_004893014.1| - 3.8e-06 26.5 0.6 0.00058 19.4 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|352682490|ref|YP_004893014.1| - 6.5e-05 22.3 0.4 6.5e-05 22.3 0.4 1.6 3 0 0 3 3 3 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|352682490|ref|YP_004893014.1| - 0.00041 19.9 0.1 0.096 12.2 0.1 2.6 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|352682490|ref|YP_004893014.1| - 0.00041 19.7 0.2 0.04 13.2 0.0 2.2 1 1 1 2 2 2 1 ATPase MipZ VirC1 PF07015.11 gi|352682490|ref|YP_004893014.1| - 0.00056 19.3 0.0 0.00092 18.6 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.18 gi|352682490|ref|YP_004893014.1| - 0.0029 17.1 0.0 0.0047 16.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_24 PF13479.6 gi|352682490|ref|YP_004893014.1| - 0.0097 15.6 0.4 3.4 7.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain CLP1_P PF16575.5 gi|352682490|ref|YP_004893014.1| - 0.028 14.2 0.0 0.079 12.7 0.0 1.7 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ATP_bind_1 PF03029.17 gi|352682490|ref|YP_004893014.1| - 0.048 13.4 0.2 0.21 11.3 0.0 2.0 2 1 0 2 2 2 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|352682490|ref|YP_004893014.1| - 0.06 12.3 0.1 0.14 11.1 0.0 1.6 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ribosomal_S3Ae PF01015.18 gi|352682490|ref|YP_004893014.1| - 0.07 12.7 0.1 0.17 11.4 0.1 1.6 1 1 1 2 2 2 0 Ribosomal S3Ae family Pyr_redox_2 PF07992.14 gi|352682491|ref|YP_004893015.1| - 1.1e-25 90.5 0.1 1.2e-25 90.4 0.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352682491|ref|YP_004893015.1| - 5.6e-19 68.5 2.6 2.9e-18 66.2 0.6 2.4 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|352682491|ref|YP_004893015.1| - 3.5e-07 29.8 0.0 4.4e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|352682491|ref|YP_004893015.1| - 1.1e-05 25.1 0.1 1.5e-05 24.7 0.1 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|352682491|ref|YP_004893015.1| - 0.00019 21.4 0.2 0.00024 21.0 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|352682491|ref|YP_004893015.1| - 0.00021 21.0 0.2 0.1 12.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|352682491|ref|YP_004893015.1| - 0.00096 19.4 0.1 0.0016 18.7 0.1 1.4 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|352682491|ref|YP_004893015.1| - 0.0011 18.3 0.4 0.0014 18.0 0.4 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|352682491|ref|YP_004893015.1| - 0.0013 18.1 0.1 0.0019 17.6 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K_oxygenase PF13434.6 gi|352682491|ref|YP_004893015.1| - 0.0017 17.6 0.0 0.0022 17.2 0.0 1.2 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_3 PF01494.19 gi|352682491|ref|YP_004893015.1| - 0.0058 15.9 0.1 0.0099 15.2 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|352682491|ref|YP_004893015.1| - 0.0066 15.2 0.0 0.4 9.3 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein XdhC_C PF13478.6 gi|352682491|ref|YP_004893015.1| - 0.023 15.2 0.0 0.031 14.8 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain adh_short PF00106.25 gi|352682491|ref|YP_004893015.1| - 0.03 13.8 0.0 0.04 13.4 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase NAD_binding_7 PF13241.6 gi|352682491|ref|YP_004893015.1| - 0.031 14.7 0.2 0.051 14.0 0.2 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|352682491|ref|YP_004893015.1| - 0.04 13.0 0.1 0.062 12.3 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|352682491|ref|YP_004893015.1| - 0.06 13.6 0.1 0.13 12.5 0.1 1.7 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.21 gi|352682491|ref|YP_004893015.1| - 0.077 12.3 0.2 0.11 11.9 0.2 1.1 1 0 0 1 1 1 0 ThiF family DUF1188 PF06690.11 gi|352682491|ref|YP_004893015.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) Sacchrp_dh_NADP PF03435.18 gi|352682491|ref|YP_004893015.1| - 0.11 12.7 0.1 0.17 12.1 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GIDA PF01134.22 gi|352682491|ref|YP_004893015.1| - 0.12 11.4 0.1 0.76 8.8 0.0 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|352682491|ref|YP_004893015.1| - 0.15 12.1 0.1 0.25 11.4 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Pyr_redox_dim PF02852.22 gi|352682492|ref|YP_004893016.1| - 3.8e-09 36.8 0.0 5.6e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_2 PF07992.14 gi|352682492|ref|YP_004893016.1| - 5e-05 22.7 0.0 7.3e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_20 PF00982.21 gi|352682493|ref|YP_004893017.1| - 1.6e-141 472.2 0.0 2.1e-141 471.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 gi|352682493|ref|YP_004893017.1| - 1.7e-50 171.3 0.0 3.1e-50 170.5 0.0 1.4 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|352682493|ref|YP_004893017.1| - 0.022 14.5 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|352682493|ref|YP_004893017.1| - 0.036 13.6 0.0 0.15 11.5 0.0 1.9 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Glycos_transf_1 PF00534.20 gi|352682493|ref|YP_004893017.1| - 0.11 12.1 0.0 1.8 8.1 0.0 2.3 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|352682493|ref|YP_004893017.1| - 0.15 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.6 gi|352682494|ref|YP_004893018.1| - 1.6e-10 41.5 0.7 4.7e-10 40.0 0.2 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|352682494|ref|YP_004893018.1| - 1.7e-10 40.7 0.1 4.8e-10 39.2 0.1 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682494|ref|YP_004893018.1| - 3.2e-06 27.3 0.2 1.5e-05 25.0 0.2 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|352682494|ref|YP_004893018.1| - 0.0002 21.8 5.3 0.0002 21.8 5.3 2.6 2 2 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|352682494|ref|YP_004893018.1| - 0.13 12.7 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 DUF1129 PF06570.11 gi|352682495|ref|YP_004893019.1| - 6.3 6.2 8.2 3.4 7.1 6.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Class_IIIsignal PF04021.12 gi|352682496|ref|YP_004893020.1| - 7e-08 32.2 0.3 7e-08 32.2 0.3 2.2 2 0 0 2 2 2 1 Class III signal peptide DUF4262 PF14081.6 gi|352682497|ref|YP_004893021.1| - 0.18 12.0 0.0 0.28 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4262) HEPN PF05168.14 gi|352682498|ref|YP_004893022.1| - 4.5e-35 120.3 0.0 5.5e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|352682498|ref|YP_004893022.1| - 0.0036 17.2 0.3 0.0071 16.3 0.3 1.5 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Suppressor_APC PF11414.8 gi|352682498|ref|YP_004893022.1| - 0.069 13.2 0.1 0.097 12.7 0.1 1.3 1 0 0 1 1 1 0 Adenomatous polyposis coli tumour suppressor protein DUF4398 PF14346.6 gi|352682498|ref|YP_004893022.1| - 0.97 10.1 4.1 1.1 9.9 1.5 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4398) NTP_transf_2 PF01909.23 gi|352682499|ref|YP_004893023.1| - 2.4e-07 30.9 0.0 2.9e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|352682499|ref|YP_004893023.1| - 0.00012 22.1 0.0 0.00015 21.8 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|352682499|ref|YP_004893023.1| - 0.0022 17.8 0.0 0.0068 16.2 0.0 1.7 1 1 0 2 2 2 1 Putative nucleotidyltransferase DUF294 NitrOD5 PF11537.8 gi|352682500|ref|YP_004893024.1| - 0.02 15.0 0.1 0.023 14.8 0.1 1.1 1 0 0 1 1 1 0 Nitrosopumilus output domain 5 MJ1316 PF04457.12 gi|352682501|ref|YP_004893025.1| - 1.2e-08 35.5 0.0 1.5e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain ThiW PF09512.10 gi|352682502|ref|YP_004893026.1| - 8.9e-36 123.3 15.7 1e-35 123.1 15.7 1.0 1 0 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) DUF815 PF05673.13 gi|352682503|ref|YP_004893027.1| - 0.011 14.9 0.1 0.016 14.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_10 PF12846.7 gi|352682503|ref|YP_004893027.1| - 0.028 13.3 0.0 0.036 13.0 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.6 gi|352682503|ref|YP_004893027.1| - 0.054 13.8 0.0 0.077 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|352682503|ref|YP_004893027.1| - 0.054 13.9 0.1 0.075 13.4 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|352682503|ref|YP_004893027.1| - 0.071 12.9 0.1 0.14 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|352682503|ref|YP_004893027.1| - 0.1 12.7 0.1 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|352682503|ref|YP_004893027.1| - 0.11 11.4 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CLP1_P PF16575.5 gi|352682503|ref|YP_004893027.1| - 0.18 11.5 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC_tran PF00005.27 gi|352682504|ref|YP_004893028.1| - 1.1e-20 74.5 0.4 1.6e-07 31.9 0.0 4.1 3 1 0 3 3 3 3 ABC transporter AAA_21 PF13304.6 gi|352682504|ref|YP_004893028.1| - 4.4e-19 69.4 0.3 1.9e-06 27.9 0.0 4.1 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352682504|ref|YP_004893028.1| - 5.7e-07 29.2 0.0 0.16 11.4 0.0 3.9 3 1 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352682504|ref|YP_004893028.1| - 9.1e-07 29.2 0.0 0.0091 16.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|352682504|ref|YP_004893028.1| - 7.1e-06 25.7 0.1 0.0068 16.1 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|352682504|ref|YP_004893028.1| - 3e-05 23.7 1.0 0.36 10.4 0.0 3.4 4 0 0 4 4 4 2 AAA domain AAA_30 PF13604.6 gi|352682504|ref|YP_004893028.1| - 3.4e-05 23.7 0.8 0.22 11.2 0.0 2.9 2 2 0 2 2 2 2 AAA domain AAA PF00004.29 gi|352682504|ref|YP_004893028.1| - 0.00013 22.3 0.0 0.4 11.1 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|352682504|ref|YP_004893028.1| - 0.00019 21.8 0.2 0.18 12.2 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain IstB_IS21 PF01695.17 gi|352682504|ref|YP_004893028.1| - 0.00064 19.5 1.1 0.7 9.6 0.1 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.6 gi|352682504|ref|YP_004893028.1| - 0.00072 19.7 0.1 0.021 15.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|352682504|ref|YP_004893028.1| - 0.002 18.6 0.0 0.043 14.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|352682504|ref|YP_004893028.1| - 0.0022 17.6 0.1 0.34 10.4 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region T2SSE PF00437.20 gi|352682504|ref|YP_004893028.1| - 0.0022 17.1 0.1 0.37 9.8 0.1 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_19 PF13245.6 gi|352682504|ref|YP_004893028.1| - 0.0036 17.6 0.3 2.4 8.5 0.2 2.4 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|352682504|ref|YP_004893028.1| - 0.011 15.7 0.0 5.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|352682504|ref|YP_004893028.1| - 0.037 14.6 1.7 5.1 7.6 0.1 3.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|352682504|ref|YP_004893028.1| - 0.041 13.6 0.5 1.5 8.5 0.3 2.4 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|352682504|ref|YP_004893028.1| - 0.042 13.7 0.1 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|352682504|ref|YP_004893028.1| - 0.043 13.3 2.1 2.7 7.4 0.5 2.2 2 0 0 2 2 2 0 PhoH-like protein Mg_chelatase PF01078.21 gi|352682504|ref|YP_004893028.1| - 0.055 12.8 0.5 0.55 9.6 0.1 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.7 gi|352682504|ref|YP_004893028.1| - 0.056 12.4 0.3 7.5 5.4 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_5 PF07728.14 gi|352682504|ref|YP_004893028.1| - 0.066 13.2 0.2 4.9 7.2 0.0 2.6 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|352682504|ref|YP_004893028.1| - 0.094 12.6 0.1 0.37 10.7 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase AAA_28 PF13521.6 gi|352682504|ref|YP_004893028.1| - 0.12 12.6 4.0 3 8.1 0.7 2.6 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|352682504|ref|YP_004893028.1| - 0.14 11.1 0.9 0.96 8.3 0.2 2.0 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.12 gi|352682504|ref|YP_004893028.1| - 0.16 11.8 0.0 6.7 6.6 0.0 2.2 2 0 0 2 2 2 0 NACHT domain NTPase_1 PF03266.15 gi|352682504|ref|YP_004893028.1| - 0.3 11.0 1.1 3.5 7.5 0.2 2.3 2 0 0 2 2 2 0 NTPase cobW PF02492.19 gi|352682504|ref|YP_004893028.1| - 0.32 10.6 2.2 2.8 7.5 0.3 2.4 3 0 0 3 3 2 0 CobW/HypB/UreG, nucleotide-binding domain DoxX_3 PF13781.6 gi|352682505|ref|YP_004893029.1| - 3.3 8.4 14.6 0.58 10.8 10.5 1.8 2 0 0 2 2 2 0 DoxX-like family DAO PF01266.24 gi|352682506|ref|YP_004893030.1| - 1e-38 133.8 2.3 1.3e-38 133.5 2.3 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|352682506|ref|YP_004893030.1| - 5.4e-08 32.4 0.2 0.00014 21.2 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|352682506|ref|YP_004893030.1| - 2.1e-07 31.0 0.2 4.6e-07 30.0 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|352682506|ref|YP_004893030.1| - 2.9e-06 26.6 0.2 0.026 13.6 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|352682506|ref|YP_004893030.1| - 2.9e-06 26.6 0.3 9.4e-06 24.9 0.1 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|352682506|ref|YP_004893030.1| - 7.1e-05 22.2 0.2 0.00011 21.6 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|352682506|ref|YP_004893030.1| - 7.7e-05 23.2 0.1 0.00018 22.0 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|352682506|ref|YP_004893030.1| - 0.00073 18.9 0.2 0.00073 18.9 0.2 1.9 2 1 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|352682506|ref|YP_004893030.1| - 0.00086 18.1 0.1 0.0016 17.3 0.0 1.5 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|352682506|ref|YP_004893030.1| - 0.0015 17.9 0.0 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|352682506|ref|YP_004893030.1| - 0.0037 17.3 0.6 0.87 9.6 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.22 gi|352682506|ref|YP_004893030.1| - 0.0088 15.2 1.2 0.03 13.4 0.7 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|352682506|ref|YP_004893030.1| - 0.0093 15.3 0.0 0.28 10.4 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase ApbA PF02558.16 gi|352682506|ref|YP_004893030.1| - 0.021 14.5 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Trp_halogenase PF04820.14 gi|352682506|ref|YP_004893030.1| - 0.061 12.2 0.9 0.11 11.3 0.3 1.6 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|352682506|ref|YP_004893030.1| - 0.14 12.0 0.1 0.24 11.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|352682506|ref|YP_004893030.1| - 0.17 12.3 0.3 0.33 11.4 0.0 1.7 2 0 0 2 2 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|352682506|ref|YP_004893030.1| - 0.19 11.3 0.1 0.27 10.8 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_3 PF13738.6 gi|352682506|ref|YP_004893030.1| - 0.2 10.9 0.1 0.31 10.2 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Malate_synthase PF01274.22 gi|352682507|ref|YP_004893031.1| - 1.2e-41 142.6 0.0 2.2e-37 128.5 0.0 2.2 2 0 0 2 2 2 2 Malate synthase HpcH_HpaI PF03328.14 gi|352682507|ref|YP_004893031.1| - 0.012 14.8 0.0 0.022 13.9 0.0 1.4 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family FAD-oxidase_C PF02913.19 gi|352682508|ref|YP_004893032.1| - 2.7e-44 151.7 0.0 1.2e-43 149.6 0.0 1.9 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|352682508|ref|YP_004893032.1| - 2.5e-34 118.0 0.3 5.5e-34 116.9 0.3 1.6 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|352682509|ref|YP_004893033.1| - 1.2e-13 51.3 3.1 1.4e-13 51.0 3.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352682509|ref|YP_004893033.1| - 1.1e-08 35.5 4.8 1.4e-08 35.1 4.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|352682509|ref|YP_004893033.1| - 2.7e-08 34.3 5.2 4.1e-08 33.7 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352682509|ref|YP_004893033.1| - 5.3e-06 26.0 13.6 0.00029 20.5 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352682509|ref|YP_004893033.1| - 2e-05 24.6 9.9 0.00071 19.6 11.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352682509|ref|YP_004893033.1| - 4.8e-05 23.4 8.9 0.00042 20.4 9.5 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|352682509|ref|YP_004893033.1| - 8.2e-05 22.4 3.6 0.017 14.9 0.1 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|352682509|ref|YP_004893033.1| - 0.0011 19.0 3.3 0.5 10.5 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|352682509|ref|YP_004893033.1| - 0.0021 18.2 1.2 0.2 11.9 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352682509|ref|YP_004893033.1| - 0.0026 17.8 11.5 0.2 11.8 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352682509|ref|YP_004893033.1| - 0.0074 16.3 11.2 0.022 14.8 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352682509|ref|YP_004893033.1| - 0.025 15.5 11.5 0.28 12.1 11.8 2.0 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|352682509|ref|YP_004893033.1| - 0.052 14.4 10.5 0.42 11.5 1.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352682509|ref|YP_004893033.1| - 0.063 13.8 10.8 0.95 10.1 1.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|352682509|ref|YP_004893033.1| - 2.2 9.4 15.9 6.6 7.9 3.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain A2L_zn_ribbon PF08792.10 gi|352682509|ref|YP_004893033.1| - 2.4 8.0 11.1 2.2 8.1 0.4 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain CCG PF02754.16 gi|352682510|ref|YP_004893034.1| - 3.9e-09 36.6 0.0 6.9e-05 23.0 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Lactate_perm PF02652.14 gi|352682511|ref|YP_004893035.1| - 3.5e-97 326.3 45.5 4.5e-97 325.9 45.5 1.1 1 0 0 1 1 1 1 L-lactate permease CoA_binding_2 PF13380.6 gi|352682512|ref|YP_004893036.1| - 3.7e-36 124.1 0.2 4.1e-36 124.0 0.2 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|352682512|ref|YP_004893036.1| - 4.5e-05 24.1 0.0 9.2e-05 23.1 0.0 1.4 2 0 0 2 2 2 1 CoA binding domain UPF0180 PF03698.13 gi|352682512|ref|YP_004893036.1| - 0.13 12.4 0.0 1.1 9.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) zf-CDGSH PF09360.10 gi|352682513|ref|YP_004893037.1| - 2.1e-14 53.5 2.3 4.4e-14 52.4 2.3 1.5 1 1 0 1 1 1 1 Iron-binding zinc finger CDGSH type Nitro_FeMo-Co PF02579.17 gi|352682514|ref|YP_004893038.1| - 8.7e-08 32.4 0.1 4.7e-07 30.0 0.1 1.9 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF488 PF04343.13 gi|352682514|ref|YP_004893038.1| - 0.11 13.1 0.0 0.15 12.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF488 Gryzun-like PF12742.7 gi|352682515|ref|YP_004893039.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Gryzun, putative Golgi trafficking Glycos_transf_1 PF00534.20 gi|352682516|ref|YP_004893040.1| - 1.3e-13 50.8 0.0 1.9e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682516|ref|YP_004893040.1| - 8.5e-12 45.7 0.0 1.2e-11 45.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682516|ref|YP_004893040.1| - 3.3e-05 24.0 0.1 0.0015 18.6 0.0 2.3 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|352682516|ref|YP_004893040.1| - 0.00063 20.2 8.7 0.016 15.6 0.2 2.3 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain PMBR PF09373.10 gi|352682516|ref|YP_004893040.1| - 0.06 13.5 0.0 0.32 11.2 0.0 2.2 2 0 0 2 2 2 0 Pseudomurein-binding repeat Glycos_transf_2 PF00535.26 gi|352682517|ref|YP_004893041.1| - 5.7e-22 78.3 0.2 5e-21 75.3 0.0 2.4 2 2 1 3 3 3 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352682517|ref|YP_004893041.1| - 1.4e-13 51.3 0.0 1.1e-12 48.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|352682517|ref|YP_004893041.1| - 0.0011 18.7 0.0 0.0027 17.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family Glycos_transf_1 PF00534.20 gi|352682519|ref|YP_004893043.1| - 2.4e-16 59.7 0.0 8.1e-16 58.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682519|ref|YP_004893043.1| - 6.8e-13 49.2 0.1 1.4e-12 48.2 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682519|ref|YP_004893043.1| - 2.2e-07 31.1 0.2 4.6e-07 30.0 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 ALG11_N PF15924.5 gi|352682519|ref|YP_004893043.1| - 0.0098 16.0 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 1 ALG11 mannosyltransferase N-terminus Glyco_trans_1_2 PF13524.6 gi|352682519|ref|YP_004893043.1| - 0.076 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 ATPase_2 PF01637.18 gi|352682520|ref|YP_004893044.1| - 2.9e-20 73.2 0.0 4.5e-20 72.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|352682520|ref|YP_004893044.1| - 1.3e-08 35.4 0.2 1.4e-07 32.1 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|352682520|ref|YP_004893044.1| - 5.8e-08 33.2 0.0 1.3e-07 32.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|352682520|ref|YP_004893044.1| - 2.6e-06 27.8 0.0 5e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352682520|ref|YP_004893044.1| - 4.2e-05 24.1 0.0 0.00019 22.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|352682520|ref|YP_004893044.1| - 0.0008 19.4 0.0 0.0013 18.7 0.0 1.5 1 1 0 1 1 1 1 NACHT domain ATP-synt_ab PF00006.25 gi|352682520|ref|YP_004893044.1| - 0.00083 19.1 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_28 PF13521.6 gi|352682520|ref|YP_004893044.1| - 0.0013 18.9 0.1 0.0033 17.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|352682520|ref|YP_004893044.1| - 0.0016 18.5 0.0 0.0084 16.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|352682520|ref|YP_004893044.1| - 0.0016 18.5 0.0 0.0034 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|352682520|ref|YP_004893044.1| - 0.0025 17.5 0.0 0.0045 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|352682520|ref|YP_004893044.1| - 0.0028 17.1 0.0 0.012 15.1 0.0 1.9 1 1 0 1 1 1 1 Bacterial TniB protein RuvB_N PF05496.12 gi|352682520|ref|YP_004893044.1| - 0.0035 17.1 0.0 0.14 11.9 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TsaE PF02367.17 gi|352682520|ref|YP_004893044.1| - 0.0036 17.3 0.0 0.0072 16.3 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|352682520|ref|YP_004893044.1| - 0.0038 17.6 0.0 0.0063 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.18 gi|352682520|ref|YP_004893044.1| - 0.008 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial dnaA protein AAA_33 PF13671.6 gi|352682520|ref|YP_004893044.1| - 0.0085 16.3 0.1 0.023 14.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|352682520|ref|YP_004893044.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|352682520|ref|YP_004893044.1| - 0.017 14.9 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NDUFB11 PF17250.2 gi|352682520|ref|YP_004893044.1| - 0.021 15.4 0.1 0.71 10.5 0.1 2.5 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase 11 kDa subunit PduV-EutP PF10662.9 gi|352682520|ref|YP_004893044.1| - 0.038 13.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation KAP_NTPase PF07693.14 gi|352682520|ref|YP_004893044.1| - 0.051 12.8 0.0 0.075 12.3 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain RNA_helicase PF00910.22 gi|352682520|ref|YP_004893044.1| - 0.069 13.5 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|352682520|ref|YP_004893044.1| - 0.078 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain ResIII PF04851.15 gi|352682520|ref|YP_004893044.1| - 0.093 12.7 0.1 2.8 7.9 0.1 2.2 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|352682520|ref|YP_004893044.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NUDIX PF00293.28 gi|352682522|ref|YP_004893046.1| - 2.2e-16 60.1 0.4 4.9e-16 59.0 0.1 1.7 1 1 1 2 2 2 1 NUDIX domain HSBP1 PF06825.12 gi|352682523|ref|YP_004893047.1| - 1.9e-07 30.8 3.2 0.00071 19.4 0.4 2.7 1 1 1 2 2 2 2 Heat shock factor binding protein 1 NPV_P10 PF05531.12 gi|352682523|ref|YP_004893047.1| - 6.3e-07 29.8 6.6 0.011 16.1 0.4 2.9 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.6 gi|352682523|ref|YP_004893047.1| - 1.3e-05 25.5 0.9 0.15 12.5 0.0 2.3 1 1 1 2 2 2 2 Snapin/Pallidin DUF1664 PF07889.12 gi|352682523|ref|YP_004893047.1| - 5.6e-05 23.2 3.5 0.0057 16.7 1.8 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) XhlA PF10779.9 gi|352682523|ref|YP_004893047.1| - 7.1e-05 22.9 4.7 0.0097 16.1 0.9 2.4 1 1 1 2 2 2 2 Haemolysin XhlA ApoLp-III PF07464.11 gi|352682523|ref|YP_004893047.1| - 0.00018 21.6 1.1 0.00035 20.7 0.2 1.7 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) ABC_tran_CTD PF16326.5 gi|352682523|ref|YP_004893047.1| - 0.00021 21.5 1.1 0.34 11.2 0.0 2.4 1 1 1 2 2 2 2 ABC transporter C-terminal domain Baculo_PEP_C PF04513.12 gi|352682523|ref|YP_004893047.1| - 0.00029 20.9 3.3 0.00045 20.3 3.1 1.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|352682523|ref|YP_004893047.1| - 0.00035 20.8 3.3 0.0018 18.5 3.2 2.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|352682523|ref|YP_004893047.1| - 0.00053 19.0 3.0 0.00065 18.7 3.0 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Apolipoprotein PF01442.18 gi|352682523|ref|YP_004893047.1| - 0.0007 19.5 4.1 0.0017 18.3 3.6 1.8 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF3552 PF12072.8 gi|352682523|ref|YP_004893047.1| - 0.00085 18.8 2.4 0.0011 18.5 2.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) Syntaxin PF00804.25 gi|352682523|ref|YP_004893047.1| - 0.00096 18.9 0.5 0.0014 18.3 0.5 1.4 1 0 0 1 1 1 1 Syntaxin Golgin_A5 PF09787.9 gi|352682523|ref|YP_004893047.1| - 0.0011 18.5 1.4 0.0011 18.5 1.4 1.5 2 0 0 2 2 2 1 Golgin subfamily A member 5 Prefoldin_3 PF13758.6 gi|352682523|ref|YP_004893047.1| - 0.0014 18.7 4.2 0.047 13.7 0.5 2.2 1 1 1 2 2 2 1 Prefoldin subunit Phasin PF05597.11 gi|352682523|ref|YP_004893047.1| - 0.0014 18.7 3.6 0.52 10.3 0.9 2.4 1 1 1 2 2 2 2 Poly(hydroxyalcanoate) granule associated protein (phasin) FliD_C PF07195.12 gi|352682523|ref|YP_004893047.1| - 0.0014 18.1 1.2 0.0046 16.4 1.2 1.8 1 1 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus Laminin_I PF06008.14 gi|352682523|ref|YP_004893047.1| - 0.002 17.9 1.9 0.0032 17.2 1.9 1.3 1 0 0 1 1 1 1 Laminin Domain I Fib_alpha PF08702.10 gi|352682523|ref|YP_004893047.1| - 0.0031 17.7 0.5 0.0038 17.4 0.5 1.3 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family DUF1515 PF07439.11 gi|352682523|ref|YP_004893047.1| - 0.0033 17.4 2.2 0.013 15.5 1.7 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1515) Prefoldin_2 PF01920.20 gi|352682523|ref|YP_004893047.1| - 0.0034 17.3 5.1 0.0098 15.8 0.5 2.5 2 1 1 3 3 2 1 Prefoldin subunit Uds1 PF15456.6 gi|352682523|ref|YP_004893047.1| - 0.0042 17.2 2.4 0.017 15.3 2.4 2.0 1 1 0 1 1 1 1 Up-regulated During Septation HOOK PF05622.12 gi|352682523|ref|YP_004893047.1| - 0.0057 14.9 0.6 0.0059 14.8 0.6 1.1 1 0 0 1 1 1 1 HOOK protein SKA2 PF16740.5 gi|352682523|ref|YP_004893047.1| - 0.0057 16.4 0.2 2.4 8.0 0.1 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF4164 PF13747.6 gi|352682523|ref|YP_004893047.1| - 0.006 16.8 6.1 0.006 16.8 6.1 1.6 2 0 0 2 2 1 1 Domain of unknown function (DUF4164) HalX PF08663.10 gi|352682523|ref|YP_004893047.1| - 0.0068 16.7 9.4 0.5 10.7 0.9 3.6 2 1 1 3 3 3 1 HalX domain Leu_zip PF15294.6 gi|352682523|ref|YP_004893047.1| - 0.0077 15.8 0.3 0.0087 15.6 0.3 1.2 1 0 0 1 1 1 1 Leucine zipper T3SSipB PF16535.5 gi|352682523|ref|YP_004893047.1| - 0.0081 16.7 0.1 0.016 15.7 0.1 1.5 1 0 0 1 1 1 1 Type III cell invasion protein SipB DUF4407 PF14362.6 gi|352682523|ref|YP_004893047.1| - 0.0082 15.5 1.1 0.011 15.1 1.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) DivIC PF04977.15 gi|352682523|ref|YP_004893047.1| - 0.0083 15.9 3.1 0.17 11.7 0.3 2.9 1 1 1 2 2 2 1 Septum formation initiator SHE3 PF17078.5 gi|352682523|ref|YP_004893047.1| - 0.0084 15.9 0.4 0.02 14.6 0.4 1.6 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 Allexi_40kDa PF05549.11 gi|352682523|ref|YP_004893047.1| - 0.0085 15.6 0.4 0.011 15.3 0.4 1.2 1 0 0 1 1 1 1 Allexivirus 40kDa protein Exonuc_VII_L PF02601.15 gi|352682523|ref|YP_004893047.1| - 0.0091 15.6 0.3 0.0093 15.6 0.3 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit DUF3584 PF12128.8 gi|352682523|ref|YP_004893047.1| - 0.0093 13.6 1.3 0.0097 13.5 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Tektin PF03148.14 gi|352682523|ref|YP_004893047.1| - 0.0097 14.7 4.2 0.019 13.8 3.7 1.6 1 1 0 1 1 1 1 Tektin family DUF3782 PF12644.7 gi|352682523|ref|YP_004893047.1| - 0.0099 16.0 2.1 0.19 11.9 0.6 3.2 1 1 3 4 4 3 1 Protein of unknown function (DUF3782) HrpB7 PF09486.10 gi|352682523|ref|YP_004893047.1| - 0.011 16.2 5.8 0.17 12.3 0.3 2.3 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Syntaxin-6_N PF09177.11 gi|352682523|ref|YP_004893047.1| - 0.011 16.2 0.7 0.021 15.4 0.7 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal AAA_13 PF13166.6 gi|352682523|ref|YP_004893047.1| - 0.014 14.0 0.4 0.014 14.1 0.4 1.1 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|352682523|ref|YP_004893047.1| - 0.015 15.7 1.4 2.5 8.5 0.8 3.1 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF3450 PF11932.8 gi|352682523|ref|YP_004893047.1| - 0.017 14.5 0.6 0.024 13.9 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Kre28 PF17097.5 gi|352682523|ref|YP_004893047.1| - 0.017 14.1 1.1 0.026 13.5 1.1 1.2 1 0 0 1 1 1 0 Spindle pole body component DUF2203 PF09969.9 gi|352682523|ref|YP_004893047.1| - 0.018 15.8 0.3 0.018 15.8 0.3 1.5 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2203) MscS_porin PF12795.7 gi|352682523|ref|YP_004893047.1| - 0.019 14.5 5.7 0.18 11.3 5.8 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain CorA PF01544.18 gi|352682523|ref|YP_004893047.1| - 0.019 14.3 6.5 0.098 12.0 6.4 1.8 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Transcrip_act PF04949.13 gi|352682523|ref|YP_004893047.1| - 0.021 14.7 2.9 0.047 13.6 2.9 1.6 1 1 0 1 1 1 0 Transcriptional activator KxDL PF10241.9 gi|352682523|ref|YP_004893047.1| - 0.023 15.0 1.2 0.075 13.3 1.0 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein FlxA PF14282.6 gi|352682523|ref|YP_004893047.1| - 0.024 14.6 1.1 0.042 13.8 1.1 1.4 1 0 0 1 1 1 0 FlxA-like protein DUF2959 PF11172.8 gi|352682523|ref|YP_004893047.1| - 0.024 14.8 0.4 1 9.4 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) UPF0184 PF03670.13 gi|352682523|ref|YP_004893047.1| - 0.025 15.0 1.9 4.1 7.9 0.3 2.8 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0184) HMMR_N PF15905.5 gi|352682523|ref|YP_004893047.1| - 0.025 14.0 0.7 0.027 14.0 0.7 1.2 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal GCN5L1 PF06320.13 gi|352682523|ref|YP_004893047.1| - 0.025 14.7 0.4 0.044 13.9 0.4 1.4 1 0 0 1 1 1 0 GCN5-like protein 1 (GCN5L1) CLZ PF16526.5 gi|352682523|ref|YP_004893047.1| - 0.029 14.7 2.2 0.62 10.5 0.9 2.5 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MnmE_helical PF12631.7 gi|352682523|ref|YP_004893047.1| - 0.029 14.5 2.6 2.1 8.5 1.5 2.1 1 1 1 2 2 2 0 MnmE helical domain Ran-binding PF05508.11 gi|352682523|ref|YP_004893047.1| - 0.029 13.3 0.8 0.032 13.2 0.8 1.1 1 0 0 1 1 1 0 RanGTP-binding protein TBCC_N PF16752.5 gi|352682523|ref|YP_004893047.1| - 0.031 14.7 2.0 0.069 13.6 1.3 1.9 2 1 0 2 2 1 0 Tubulin-specific chaperone C N-terminal domain Fmp27_WPPW PF10359.9 gi|352682523|ref|YP_004893047.1| - 0.033 13.0 1.7 0.041 12.7 1.7 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF554 PF04474.12 gi|352682523|ref|YP_004893047.1| - 0.038 13.5 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF554) Spectrin PF00435.21 gi|352682523|ref|YP_004893047.1| - 0.04 14.4 0.8 0.14 12.7 0.7 2.0 1 1 0 1 1 1 0 Spectrin repeat DUF4988 PF16378.5 gi|352682523|ref|YP_004893047.1| - 0.047 13.3 5.0 0.9 9.2 0.4 2.5 1 1 1 2 2 2 0 Domain of unknown function DUF2205 PF10224.9 gi|352682523|ref|YP_004893047.1| - 0.048 13.6 7.2 11 6.0 3.8 3.4 1 1 1 2 2 2 0 Short coiled-coil protein Seryl_tRNA_N PF02403.22 gi|352682523|ref|YP_004893047.1| - 0.049 13.9 4.1 0.047 13.9 1.9 2.0 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Syntaxin_2 PF14523.6 gi|352682523|ref|YP_004893047.1| - 0.055 13.8 2.9 0.16 12.4 1.8 2.2 2 1 0 2 2 1 0 Syntaxin-like protein Matrilin_ccoil PF10393.9 gi|352682523|ref|YP_004893047.1| - 0.058 13.3 3.9 0.12 12.3 0.2 2.8 2 1 1 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin MbeD_MobD PF04899.12 gi|352682523|ref|YP_004893047.1| - 0.06 13.5 0.6 11 6.2 0.1 2.4 1 1 0 2 2 2 0 MbeD/MobD like Fzo_mitofusin PF04799.13 gi|352682523|ref|YP_004893047.1| - 0.061 12.9 3.5 0.2 11.2 1.6 2.2 2 1 0 2 2 1 0 fzo-like conserved region DUF5098 PF17023.5 gi|352682523|ref|YP_004893047.1| - 0.074 12.0 1.1 0.097 11.6 1.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5098) DUF16 PF01519.16 gi|352682523|ref|YP_004893047.1| - 0.074 13.5 3.4 0.57 10.7 3.4 2.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 Prefoldin PF02996.17 gi|352682523|ref|YP_004893047.1| - 0.081 12.8 2.5 2.2 8.2 0.3 2.4 1 1 1 2 2 2 0 Prefoldin subunit LUC7 PF03194.15 gi|352682523|ref|YP_004893047.1| - 0.085 12.5 1.7 0.12 12.0 1.4 1.4 2 0 0 2 2 1 0 LUC7 N_terminus DUF4795 PF16043.5 gi|352682523|ref|YP_004893047.1| - 0.091 12.4 1.6 0.12 11.9 1.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Vip3A_N PF12495.8 gi|352682523|ref|YP_004893047.1| - 0.096 12.6 0.4 0.14 12.0 0.4 1.4 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal Nup54 PF13874.6 gi|352682523|ref|YP_004893047.1| - 0.099 12.8 2.9 0.28 11.3 2.9 1.6 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 COG2 PF06148.11 gi|352682523|ref|YP_004893047.1| - 0.1 12.7 2.9 1.1 9.3 0.9 2.5 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4254 PF14063.6 gi|352682523|ref|YP_004893047.1| - 0.12 12.2 6.1 0.29 11.0 5.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4254) Zw10 PF06248.13 gi|352682523|ref|YP_004893047.1| - 0.12 11.0 0.8 0.15 10.6 0.8 1.3 1 1 0 1 1 1 0 Centromere/kinetochore Zw10 CdvA PF18822.1 gi|352682523|ref|YP_004893047.1| - 0.13 12.1 8.2 0.098 12.5 3.9 2.4 2 1 1 3 3 2 0 CdvA-like coiled-coil domain WASH_WAHD PF11945.8 gi|352682523|ref|YP_004893047.1| - 0.13 11.7 3.3 0.53 9.8 2.7 1.9 1 1 1 2 2 2 0 WAHD domain of WASH complex Hemagglutinin PF00509.18 gi|352682523|ref|YP_004893047.1| - 0.14 10.5 0.1 0.16 10.3 0.1 1.2 1 0 0 1 1 1 0 Haemagglutinin TMPIT PF07851.13 gi|352682523|ref|YP_004893047.1| - 0.15 11.3 0.1 0.2 10.9 0.1 1.1 1 0 0 1 1 1 0 TMPIT-like protein WXG100 PF06013.12 gi|352682523|ref|YP_004893047.1| - 0.18 12.0 2.6 4.5 7.6 0.3 3.0 2 1 1 4 4 3 0 Proteins of 100 residues with WXG RPW8 PF05659.11 gi|352682523|ref|YP_004893047.1| - 0.2 11.3 2.3 1.2 8.8 1.1 2.4 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF4140 PF13600.6 gi|352682523|ref|YP_004893047.1| - 0.23 11.9 4.4 2.5 8.6 2.4 2.3 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) TraF_2 PF13729.6 gi|352682523|ref|YP_004893047.1| - 0.24 10.7 1.8 0.74 9.1 1.7 1.7 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Tropomyosin_1 PF12718.7 gi|352682523|ref|YP_004893047.1| - 0.34 11.1 6.6 6.1 7.0 0.3 2.3 2 1 0 2 2 1 0 Tropomyosin like ZapB PF06005.12 gi|352682523|ref|YP_004893047.1| - 0.39 11.2 4.9 0.76 10.3 0.3 2.7 2 1 1 3 3 2 0 Cell division protein ZapB CCDC-167 PF15188.6 gi|352682523|ref|YP_004893047.1| - 0.4 11.1 4.6 11 6.4 3.4 3.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 LPP PF04728.13 gi|352682523|ref|YP_004893047.1| - 0.43 11.0 5.4 5.3 7.5 1.4 3.0 1 1 1 2 2 2 0 Lipoprotein leucine-zipper TolA_bind_tri PF16331.5 gi|352682523|ref|YP_004893047.1| - 0.59 10.2 5.1 3.7 7.7 3.7 2.6 2 1 0 2 2 1 0 TolA binding protein trimerisation SlyX PF04102.12 gi|352682523|ref|YP_004893047.1| - 2.1 9.0 7.4 43 4.8 4.5 3.0 2 1 0 2 2 1 0 SlyX dTDP_sugar_isom PF00908.17 gi|352682524|ref|YP_004893048.1| - 8.2e-69 230.6 0.0 9.3e-69 230.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase RmlD_sub_bind PF04321.17 gi|352682525|ref|YP_004893049.1| - 2.3e-59 200.8 0.0 2.6e-59 200.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|352682525|ref|YP_004893049.1| - 2.3e-16 60.0 0.0 3.9e-16 59.2 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|352682525|ref|YP_004893049.1| - 1.2e-07 31.2 0.2 2.8e-06 26.7 0.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|352682525|ref|YP_004893049.1| - 3.5e-06 26.6 0.1 3.5e-05 23.4 0.1 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|352682525|ref|YP_004893049.1| - 6.4e-05 22.2 0.6 0.0014 17.9 0.0 2.6 2 1 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|352682525|ref|YP_004893049.1| - 0.00059 19.8 0.1 0.0011 18.9 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|352682525|ref|YP_004893049.1| - 0.00099 18.2 0.0 0.0029 16.6 0.0 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DFP PF04127.15 gi|352682525|ref|YP_004893049.1| - 0.024 14.5 0.1 0.039 13.8 0.1 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein KR PF08659.10 gi|352682525|ref|YP_004893049.1| - 0.16 11.9 0.1 1 9.3 0.1 2.1 2 0 0 2 2 2 0 KR domain GDP_Man_Dehyd PF16363.5 gi|352682526|ref|YP_004893050.1| - 4.9e-68 230.0 0.0 6.7e-67 226.2 0.0 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|352682526|ref|YP_004893050.1| - 5.8e-62 209.3 0.0 6.8e-62 209.1 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|352682526|ref|YP_004893050.1| - 8.9e-19 67.7 0.0 1.2e-18 67.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|352682526|ref|YP_004893050.1| - 2.8e-15 56.1 0.0 3.5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|352682526|ref|YP_004893050.1| - 1.4e-10 40.8 0.0 1.3e-09 37.6 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|352682526|ref|YP_004893050.1| - 6.6e-10 38.6 0.1 9.1e-09 34.8 0.0 2.4 2 1 0 2 2 2 1 Male sterility protein DUF4777 PF16007.5 gi|352682526|ref|YP_004893050.1| - 0.018 15.3 0.5 0.91 9.8 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) Sacchrp_dh_NADP PF03435.18 gi|352682526|ref|YP_004893050.1| - 0.052 13.8 0.0 0.36 11.1 0.0 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain adh_short PF00106.25 gi|352682526|ref|YP_004893050.1| - 0.23 10.9 0.0 5 6.5 0.0 2.2 2 0 0 2 2 2 0 short chain dehydrogenase NTP_transferase PF00483.23 gi|352682527|ref|YP_004893051.1| - 5.4e-30 104.8 0.0 6.4e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Bactofilin PF04519.13 gi|352682527|ref|YP_004893051.1| - 0.0037 17.5 1.4 0.007 16.6 1.4 1.4 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|352682527|ref|YP_004893051.1| - 0.0081 15.9 1.5 0.07 12.9 0.0 3.0 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|352682527|ref|YP_004893051.1| - 0.045 14.1 1.1 0.3 11.4 0.0 2.4 2 1 0 2 2 2 0 MobA-like NTP transferase domain Glycos_transf_2 PF00535.26 gi|352682527|ref|YP_004893051.1| - 0.16 11.7 0.0 0.32 10.8 0.0 1.5 1 1 0 1 1 1 0 Glycosyl transferase family 2 Epimerase PF01370.21 gi|352682528|ref|YP_004893052.1| - 8.1e-57 192.5 0.0 1e-56 192.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|352682528|ref|YP_004893052.1| - 4.6e-48 164.3 0.0 5.9e-48 164.0 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|352682528|ref|YP_004893052.1| - 4.5e-21 75.2 0.0 5.4e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|352682528|ref|YP_004893052.1| - 5.5e-17 61.8 0.0 3.3e-12 46.2 0.0 2.7 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|352682528|ref|YP_004893052.1| - 1.2e-15 57.3 0.0 1.6e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|352682528|ref|YP_004893052.1| - 3.7e-10 39.4 0.1 4e-05 22.9 0.1 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|352682528|ref|YP_004893052.1| - 1.5e-06 28.2 0.0 3.4e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|352682528|ref|YP_004893052.1| - 3.7e-06 26.5 0.1 0.00046 19.7 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|352682528|ref|YP_004893052.1| - 0.0056 16.6 0.1 0.014 15.3 0.0 1.7 2 0 0 2 2 2 1 KR domain PAC2 PF09754.9 gi|352682528|ref|YP_004893052.1| - 0.067 13.2 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 PAC2 family adh_short_C2 PF13561.6 gi|352682528|ref|YP_004893052.1| - 0.12 12.0 0.1 4.2 6.9 0.0 2.4 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.13 gi|352682528|ref|YP_004893052.1| - 0.17 11.4 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family Glycos_transf_2 PF00535.26 gi|352682529|ref|YP_004893053.1| - 1.3e-19 70.6 0.0 1.9e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352682529|ref|YP_004893053.1| - 1.4e-08 34.9 0.0 1.8e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 AAA_22 PF13401.6 gi|352682531|ref|YP_004893055.1| - 0.0025 18.1 0.0 0.0042 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|352682531|ref|YP_004893055.1| - 0.0031 17.3 0.0 0.0048 16.6 0.0 1.2 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|352682531|ref|YP_004893055.1| - 0.0053 17.3 0.0 0.01 16.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 gi|352682531|ref|YP_004893055.1| - 0.0054 16.9 0.1 0.039 14.1 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|352682531|ref|YP_004893055.1| - 0.011 16.2 0.0 0.032 14.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|352682531|ref|YP_004893055.1| - 0.021 14.7 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|352682531|ref|YP_004893055.1| - 0.022 14.3 0.1 0.05 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|352682531|ref|YP_004893055.1| - 0.025 15.0 0.0 0.037 14.4 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|352682531|ref|YP_004893055.1| - 0.027 14.2 0.0 0.046 13.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain Adeno_IVa2 PF02456.15 gi|352682531|ref|YP_004893055.1| - 0.042 12.7 0.0 0.06 12.1 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_16 PF13191.6 gi|352682531|ref|YP_004893055.1| - 0.049 14.0 0.1 0.12 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|352682531|ref|YP_004893055.1| - 0.051 13.5 0.0 0.097 12.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|352682531|ref|YP_004893055.1| - 0.055 13.2 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|352682531|ref|YP_004893055.1| - 0.078 12.7 0.1 0.82 9.4 0.0 2.0 2 0 0 2 2 2 0 Cytidylate kinase RNA_helicase PF00910.22 gi|352682531|ref|YP_004893055.1| - 0.11 12.9 0.0 0.17 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|352682531|ref|YP_004893055.1| - 0.15 12.0 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|352682531|ref|YP_004893055.1| - 0.15 11.9 0.0 0.2 11.5 0.0 1.1 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|352682531|ref|YP_004893055.1| - 0.18 11.8 0.0 0.27 11.3 0.0 1.2 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_PrkA PF08298.11 gi|352682531|ref|YP_004893055.1| - 0.2 10.5 0.0 0.28 10.1 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain NB-ARC PF00931.22 gi|352682531|ref|YP_004893055.1| - 0.23 10.6 0.0 0.33 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Polysacc_synt_3 PF13440.6 gi|352682532|ref|YP_004893056.1| - 1.3e-23 83.6 18.5 2.5e-23 82.7 18.5 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|352682532|ref|YP_004893056.1| - 5.3e-19 68.7 29.1 5.3e-19 68.7 29.1 2.3 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|352682532|ref|YP_004893056.1| - 9e-12 45.3 34.6 5.6e-09 36.2 17.0 4.1 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|352682532|ref|YP_004893056.1| - 3.6e-05 23.5 14.4 3.6e-05 23.5 14.4 3.7 3 1 1 4 4 4 2 MatE Methyltransf_24 PF13578.6 gi|352682534|ref|YP_004893058.1| - 2.4e-16 60.6 0.0 3.9e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CmcI PF04989.12 gi|352682534|ref|YP_004893058.1| - 5.7e-11 42.5 0.0 3.4e-07 30.2 0.0 2.1 2 0 0 2 2 2 2 Cephalosporin hydroxylase FtsJ PF01728.19 gi|352682534|ref|YP_004893058.1| - 0.00091 19.4 0.0 0.0012 19.0 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_3 PF01596.17 gi|352682534|ref|YP_004893058.1| - 0.001 18.3 0.0 0.0021 17.2 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase Glycos_transf_2 PF00535.26 gi|352682536|ref|YP_004893060.1| - 5.9e-20 71.8 0.0 8.6e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352682536|ref|YP_004893060.1| - 1.2e-14 54.8 0.0 1.6e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|352682536|ref|YP_004893060.1| - 5.7e-10 39.2 0.1 7.3e-09 35.6 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.6 gi|352682536|ref|YP_004893060.1| - 6.4e-08 32.7 2.2 1.2e-07 31.8 2.2 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|352682536|ref|YP_004893060.1| - 5.6e-05 22.7 0.1 7.6e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|352682536|ref|YP_004893060.1| - 7.7e-05 22.2 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 GlcNAc PF11397.8 gi|352682536|ref|YP_004893060.1| - 0.00032 20.3 0.1 0.00042 19.9 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase (GlcNAc) CAP59_mtransfer PF11735.8 gi|352682536|ref|YP_004893060.1| - 0.023 14.4 0.0 0.27 10.9 0.0 2.1 1 1 0 2 2 2 0 Cryptococcal mannosyltransferase 1 Glyco_tranf_2_4 PF13704.6 gi|352682536|ref|YP_004893060.1| - 0.11 13.0 0.0 0.29 11.7 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Thymidylate_kin PF02223.17 gi|352682537|ref|YP_004893061.1| - 3.5e-05 23.6 0.0 0.0072 16.0 0.0 2.4 2 1 0 2 2 2 2 Thymidylate kinase dNK PF01712.19 gi|352682537|ref|YP_004893061.1| - 0.0012 18.7 0.1 0.056 13.3 0.1 2.1 2 0 0 2 2 2 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|352682537|ref|YP_004893061.1| - 0.0014 19.2 0.1 0.017 15.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|352682537|ref|YP_004893061.1| - 0.038 14.3 0.0 0.072 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|352682537|ref|YP_004893061.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|352682537|ref|YP_004893061.1| - 0.14 12.4 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|352682537|ref|YP_004893061.1| - 0.15 12.4 0.1 0.56 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain Glyco_trans_1_4 PF13692.6 gi|352682538|ref|YP_004893062.1| - 1.5e-06 28.7 0.0 4.3e-06 27.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|352682538|ref|YP_004893062.1| - 0.029 13.9 0.0 0.089 12.3 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|352682539|ref|YP_004893063.1| - 4.4e-14 52.4 0.0 1.3e-13 50.8 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682539|ref|YP_004893063.1| - 7.9e-14 52.2 0.0 1.6e-13 51.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682539|ref|YP_004893063.1| - 1.9e-11 44.2 0.1 3.6e-11 43.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|352682539|ref|YP_004893063.1| - 1.3e-05 25.8 0.1 2.2e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|352682539|ref|YP_004893063.1| - 0.027 14.9 0.0 0.05 14.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|352682540|ref|YP_004893064.1| - 4.4e-18 65.7 0.0 7e-18 65.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352682540|ref|YP_004893064.1| - 7.7e-15 55.4 0.0 1.2e-14 54.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|352682540|ref|YP_004893064.1| - 3.8e-08 33.0 0.0 6.5e-07 29.0 0.0 2.7 3 1 0 3 3 3 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|352682540|ref|YP_004893064.1| - 2.4e-07 30.9 0.0 1.5e-06 28.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|352682540|ref|YP_004893064.1| - 0.0013 18.4 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family GlcNAc PF11397.8 gi|352682540|ref|YP_004893064.1| - 0.005 16.3 0.0 0.007 15.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase (GlcNAc) Glyco_tranf_2_4 PF13704.6 gi|352682540|ref|YP_004893064.1| - 0.049 14.2 0.0 0.12 12.9 0.0 1.7 1 1 0 1 1 1 0 Glycosyl transferase family 2 CAP59_mtransfer PF11735.8 gi|352682540|ref|YP_004893064.1| - 0.14 11.8 0.0 0.33 10.6 0.0 1.6 1 1 0 1 1 1 0 Cryptococcal mannosyltransferase 1 Glycos_transf_2 PF00535.26 gi|352682541|ref|YP_004893065.1| - 9.5e-23 80.8 0.1 1.5e-22 80.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|352682541|ref|YP_004893065.1| - 2.6e-09 37.3 3.1 5e-08 33.1 3.1 2.1 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|352682541|ref|YP_004893065.1| - 1.8e-05 24.7 0.0 0.0045 16.9 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|352682541|ref|YP_004893065.1| - 2.6e-05 24.6 0.2 0.00017 22.1 0.1 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|352682541|ref|YP_004893065.1| - 7.3e-05 22.3 0.0 0.0075 15.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 21 Anp1 PF03452.14 gi|352682541|ref|YP_004893065.1| - 8.3e-05 22.1 0.0 0.0091 15.4 0.0 2.1 2 0 0 2 2 2 2 Anp1 Glyco_tranf_2_2 PF10111.9 gi|352682541|ref|YP_004893065.1| - 0.00019 21.0 0.0 0.0017 17.9 0.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.6 gi|352682541|ref|YP_004893065.1| - 0.1 12.3 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family Glycos_transf_2 PF00535.26 gi|352682542|ref|YP_004893066.1| - 1.2e-11 44.7 0.0 2.6e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352682542|ref|YP_004893066.1| - 0.0023 17.8 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|352682542|ref|YP_004893066.1| - 0.072 13.6 0.0 0.18 12.4 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt_C PF14667.6 gi|352682543|ref|YP_004893067.1| - 1.3e-10 41.5 20.4 1.3e-10 41.5 20.4 1.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|352682543|ref|YP_004893067.1| - 0.0013 17.5 14.6 0.002 16.8 14.2 1.5 1 1 1 2 2 2 1 Lipid II flippase MurJ Polysacc_synt_3 PF13440.6 gi|352682543|ref|YP_004893067.1| - 0.0021 17.3 1.7 0.0048 16.2 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|352682544|ref|YP_004893068.1| - 5.3e-11 42.4 17.7 5.9e-11 42.3 17.7 1.1 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|352682544|ref|YP_004893068.1| - 1.4e-06 27.8 11.6 1.9e-06 27.4 11.6 1.3 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein MatE PF01554.18 gi|352682544|ref|YP_004893068.1| - 1e-05 25.2 10.3 1e-05 25.2 10.3 2.3 1 1 2 3 3 3 1 MatE Polysacc_synt_C PF14667.6 gi|352682544|ref|YP_004893068.1| - 0.00014 21.9 7.9 0.00014 21.9 7.9 2.5 1 1 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain Glycos_transf_2 PF00535.26 gi|352682545|ref|YP_004893069.1| - 1.5e-20 73.7 0.0 2.8e-20 72.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352682545|ref|YP_004893069.1| - 1.3e-15 57.9 0.0 1.8e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|352682545|ref|YP_004893069.1| - 2.1e-10 40.8 0.2 3.1e-10 40.3 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|352682545|ref|YP_004893069.1| - 3.2e-05 23.5 0.0 9e-05 22.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|352682545|ref|YP_004893069.1| - 0.0094 15.4 0.0 0.02 14.4 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.14 gi|352682545|ref|YP_004893069.1| - 0.028 14.1 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase HicB_lk_antitox PF15919.5 gi|352682545|ref|YP_004893069.1| - 0.12 12.5 0.0 0.74 9.9 0.0 2.0 2 0 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system Glyco_tranf_2_3 PF13641.6 gi|352682546|ref|YP_004893070.1| - 5.3e-13 49.4 0.0 1.2e-12 48.2 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|352682546|ref|YP_004893070.1| - 1.6e-12 47.6 0.0 2.4e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|352682546|ref|YP_004893070.1| - 5.4e-06 26.0 0.0 9.7e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|352682546|ref|YP_004893070.1| - 0.00029 20.4 0.0 0.00048 19.7 0.0 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|352682546|ref|YP_004893070.1| - 0.024 14.5 0.1 0.087 12.7 0.1 2.0 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.6 gi|352682546|ref|YP_004893070.1| - 0.024 14.3 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family Glycos_transf_1 PF00534.20 gi|352682548|ref|YP_004893072.1| - 1.6e-08 34.3 0.0 9e-08 31.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682548|ref|YP_004893072.1| - 1.5e-07 31.9 0.0 2.6e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_deac_1 PF01522.21 gi|352682549|ref|YP_004893073.1| - 3.3e-28 98.1 0.0 5e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.20 gi|352682550|ref|YP_004893074.1| - 4.4e-33 114.2 0.0 7.1e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682550|ref|YP_004893074.1| - 1.6e-24 86.8 0.0 2.8e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682550|ref|YP_004893074.1| - 1.7e-19 70.5 0.2 5.6e-19 68.8 0.0 1.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|352682550|ref|YP_004893074.1| - 2.7e-09 37.7 0.0 5.2e-08 33.5 0.0 2.6 1 1 2 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|352682550|ref|YP_004893074.1| - 4.2e-07 30.1 0.0 2.9e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|352682550|ref|YP_004893074.1| - 3.5e-05 24.1 0.0 7.3e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Pyr_redox PF00070.27 gi|352682550|ref|YP_004893074.1| - 0.012 16.1 0.1 0.044 14.3 0.1 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_transf_5 PF08323.11 gi|352682550|ref|YP_004893074.1| - 0.021 14.6 0.1 0.075 12.7 0.0 1.9 1 1 1 2 2 2 0 Starch synthase catalytic domain Glyco_transf_4 PF13439.6 gi|352682551|ref|YP_004893075.1| - 0.025 14.6 0.0 0.069 13.1 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|352682551|ref|YP_004893075.1| - 0.073 13.5 0.0 0.18 12.3 0.0 1.6 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|352682553|ref|YP_004893077.1| - 1.8e-31 109.0 0.1 3.9e-31 107.9 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682553|ref|YP_004893077.1| - 1e-25 90.7 0.1 2.7e-25 89.3 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682553|ref|YP_004893077.1| - 3.2e-15 56.5 0.1 3.2e-15 56.5 0.1 2.1 3 0 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|352682553|ref|YP_004893077.1| - 4.7e-11 43.4 0.0 8.7e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|352682553|ref|YP_004893077.1| - 4.5e-05 23.7 0.0 8.8e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|352682553|ref|YP_004893077.1| - 0.00011 22.0 0.1 0.00018 21.3 0.1 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|352682553|ref|YP_004893077.1| - 0.00069 19.7 0.2 0.0012 18.8 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like RF3_C PF16658.5 gi|352682553|ref|YP_004893077.1| - 0.16 11.8 0.0 22 4.9 0.0 2.5 2 0 0 2 2 2 0 Class II release factor RF3, C-terminal domain Glycos_transf_1 PF00534.20 gi|352682554|ref|YP_004893078.1| - 4.6e-29 101.2 0.0 8.5e-29 100.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682554|ref|YP_004893078.1| - 1.6e-24 86.8 1.3 1.6e-24 86.8 1.3 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|352682554|ref|YP_004893078.1| - 4e-23 82.3 0.0 9e-23 81.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|352682554|ref|YP_004893078.1| - 5.6e-16 59.4 0.1 3e-15 57.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|352682554|ref|YP_004893078.1| - 8.7e-06 26.1 0.0 2.8e-05 24.4 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|352682554|ref|YP_004893078.1| - 0.019 15.0 0.1 0.058 13.4 0.1 1.9 1 0 0 1 1 1 0 Glycosyl transferase 4-like HAD PF12710.7 gi|352682554|ref|YP_004893078.1| - 0.034 14.6 0.1 4 7.8 0.0 3.1 3 0 0 3 3 3 0 haloacid dehalogenase-like hydrolase LpxB PF02684.15 gi|352682554|ref|YP_004893078.1| - 0.059 12.2 0.1 0.11 11.3 0.1 1.6 1 1 0 1 1 1 0 Lipid-A-disaccharide synthetase PIG-L PF02585.17 gi|352682554|ref|YP_004893078.1| - 0.072 13.7 0.0 0.22 12.2 0.0 1.8 1 0 0 1 1 1 0 GlcNAc-PI de-N-acetylase Glyco_transf_5 PF08323.11 gi|352682554|ref|YP_004893078.1| - 0.14 11.8 0.9 3.5 7.2 0.9 2.3 1 1 1 2 2 2 0 Starch synthase catalytic domain DUF1616 PF07760.11 gi|352682555|ref|YP_004893079.1| - 4.7e-30 105.0 10.1 5.5e-30 104.8 10.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2062 PF09835.9 gi|352682555|ref|YP_004893079.1| - 9.9 6.0 11.7 63 3.4 8.7 2.4 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) DUF1616 PF07760.11 gi|352682556|ref|YP_004893080.1| - 2.7e-11 43.4 0.2 2.5e-10 40.2 0.2 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1616) Ins_allergen_rp PF06757.13 gi|352682556|ref|YP_004893080.1| - 0.068 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Insect allergen related repeat, nitrile-specifier detoxification DUF5592 PF17332.2 gi|352682556|ref|YP_004893080.1| - 0.16 12.5 3.6 1.6 9.3 0.0 3.2 3 0 0 3 3 3 0 Family of unknown function (DUF5592) NTP_transf_2 PF01909.23 gi|352682559|ref|YP_004893083.1| - 8.9e-14 51.6 0.0 1.1e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|352682559|ref|YP_004893083.1| - 3e-09 36.8 0.0 3.5e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|352682559|ref|YP_004893083.1| - 7.8e-05 22.9 0.0 9.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|352682559|ref|YP_004893083.1| - 0.022 14.6 0.0 0.035 13.9 0.0 1.3 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|352682560|ref|YP_004893084.1| - 1.2e-25 90.0 3.5 1.3e-25 89.8 3.5 1.0 1 0 0 1 1 1 1 HEPN domain HSBP1 PF06825.12 gi|352682561|ref|YP_004893085.1| - 2.9e-13 49.5 33.0 0.00033 20.5 1.4 6.9 1 1 6 7 7 7 3 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|352682561|ref|YP_004893085.1| - 1.3e-10 41.4 17.7 0.00015 22.0 2.1 3.4 1 1 2 3 3 3 3 Bacterial protein of unknown function (DUF948) Apolipoprotein PF01442.18 gi|352682561|ref|YP_004893085.1| - 1.8e-09 37.7 8.6 3.7e-09 36.7 8.6 1.5 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain ABC_tran_CTD PF16326.5 gi|352682561|ref|YP_004893085.1| - 1.3e-08 35.0 6.9 0.026 14.8 0.1 3.4 1 1 2 3 3 3 3 ABC transporter C-terminal domain FliD_C PF07195.12 gi|352682561|ref|YP_004893085.1| - 1.4e-07 31.2 8.9 0.01 15.3 1.0 3.2 1 1 2 3 3 3 2 Flagellar hook-associated protein 2 C-terminus AAA_13 PF13166.6 gi|352682561|ref|YP_004893085.1| - 2.7e-07 29.7 7.4 3.5e-07 29.3 7.4 1.1 1 0 0 1 1 1 1 AAA domain DUF1664 PF07889.12 gi|352682561|ref|YP_004893085.1| - 4.7e-07 29.9 15.2 0.001 19.1 4.7 3.7 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|352682561|ref|YP_004893085.1| - 9.3e-07 29.2 17.3 6.4e-05 23.3 3.9 3.5 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.6 gi|352682561|ref|YP_004893085.1| - 2.7e-06 27.7 8.6 0.046 14.1 0.0 4.0 1 1 2 3 3 3 1 Snapin/Pallidin Baculo_PEP_C PF04513.12 gi|352682561|ref|YP_004893085.1| - 3.1e-06 27.3 12.7 0.0028 17.7 5.5 2.7 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Fib_alpha PF08702.10 gi|352682561|ref|YP_004893085.1| - 1.9e-05 24.9 13.4 0.012 15.8 3.8 2.1 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF4407 PF14362.6 gi|352682561|ref|YP_004893085.1| - 2.8e-05 23.6 10.9 0.00017 21.0 3.5 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4407) Flagellin_C PF00700.21 gi|352682561|ref|YP_004893085.1| - 4.5e-05 23.7 12.1 0.051 13.9 0.7 4.5 1 1 3 4 4 4 1 Bacterial flagellin C-terminal helical region MscS_porin PF12795.7 gi|352682561|ref|YP_004893085.1| - 6.4e-05 22.6 7.0 0.0093 15.5 4.0 2.7 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain DUF16 PF01519.16 gi|352682561|ref|YP_004893085.1| - 7.3e-05 23.2 13.3 0.016 15.7 2.2 3.1 1 1 2 3 3 3 3 Protein of unknown function DUF16 ApoLp-III PF07464.11 gi|352682561|ref|YP_004893085.1| - 8.6e-05 22.7 9.4 0.0032 17.6 9.4 2.5 1 1 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) HMMR_N PF15905.5 gi|352682561|ref|YP_004893085.1| - 0.00012 21.7 17.1 0.00063 19.3 8.7 2.1 1 1 1 2 2 2 2 Hyaluronan mediated motility receptor N-terminal Phage_Mu_Gam PF07352.12 gi|352682561|ref|YP_004893085.1| - 0.00016 21.6 11.1 0.17 11.8 1.7 3.4 1 1 2 3 3 3 2 Bacteriophage Mu Gam like protein Muted PF14942.6 gi|352682561|ref|YP_004893085.1| - 0.00016 22.1 9.2 0.0015 18.9 2.9 2.2 1 1 1 2 2 2 2 Organelle biogenesis, Muted-like protein TACC_C PF05010.14 gi|352682561|ref|YP_004893085.1| - 0.0002 21.2 8.9 0.029 14.2 1.5 3.0 1 1 2 3 3 3 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TPR_MLP1_2 PF07926.12 gi|352682561|ref|YP_004893085.1| - 0.00026 21.1 8.4 1.1 9.3 1.4 3.9 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Transcrip_act PF04949.13 gi|352682561|ref|YP_004893085.1| - 0.00026 20.9 16.2 0.021 14.7 2.8 3.2 1 1 2 3 3 3 2 Transcriptional activator Laminin_II PF06009.12 gi|352682561|ref|YP_004893085.1| - 0.00037 20.5 13.1 0.47 10.5 2.7 3.2 1 1 2 3 3 3 2 Laminin Domain II RmuC PF02646.16 gi|352682561|ref|YP_004893085.1| - 0.00037 19.7 8.4 0.42 9.7 0.9 3.1 1 1 2 3 3 3 2 RmuC family TBCA PF02970.16 gi|352682561|ref|YP_004893085.1| - 0.00039 20.7 9.9 33 4.9 9.9 3.5 1 1 0 1 1 1 0 Tubulin binding cofactor A TBCC_N PF16752.5 gi|352682561|ref|YP_004893085.1| - 0.00044 20.7 8.3 0.032 14.7 1.3 2.5 1 1 1 2 2 2 1 Tubulin-specific chaperone C N-terminal domain DLP_helical PF18709.1 gi|352682561|ref|YP_004893085.1| - 0.00052 19.3 11.2 0.088 12.0 4.8 2.7 1 1 2 3 3 3 2 Dynamin-like helical domain SF-assemblin PF06705.11 gi|352682561|ref|YP_004893085.1| - 0.00057 19.3 15.8 0.0011 18.4 15.8 1.4 1 0 0 1 1 1 1 SF-assemblin/beta giardin DUF1640 PF07798.11 gi|352682561|ref|YP_004893085.1| - 0.0006 19.9 15.9 0.38 10.8 10.5 3.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1640) MCPsignal PF00015.21 gi|352682561|ref|YP_004893085.1| - 0.00061 19.6 12.5 0.0029 17.4 7.0 2.7 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Uds1 PF15456.6 gi|352682561|ref|YP_004893085.1| - 0.00069 19.8 11.2 0.84 9.8 11.2 2.9 1 1 0 1 1 1 1 Up-regulated During Septation KxDL PF10241.9 gi|352682561|ref|YP_004893085.1| - 0.00073 19.8 10.6 0.53 10.6 0.4 4.0 1 1 2 3 3 3 1 Uncharacterized conserved protein Spc7 PF08317.11 gi|352682561|ref|YP_004893085.1| - 0.00075 18.5 11.2 0.018 13.9 7.5 2.1 1 1 1 2 2 2 1 Spc7 kinetochore protein Exonuc_VII_L PF02601.15 gi|352682561|ref|YP_004893085.1| - 0.00082 19.0 5.6 0.0033 17.1 5.6 1.8 1 1 0 1 1 1 1 Exonuclease VII, large subunit CdvA PF18822.1 gi|352682561|ref|YP_004893085.1| - 0.00099 18.9 16.1 0.27 11.1 1.7 3.5 1 1 3 4 4 4 1 CdvA-like coiled-coil domain Hemagglutinin PF00509.18 gi|352682561|ref|YP_004893085.1| - 0.0011 17.5 13.3 0.11 10.9 1.3 2.7 1 1 1 2 2 2 2 Haemagglutinin HalX PF08663.10 gi|352682561|ref|YP_004893085.1| - 0.0011 19.3 15.7 3.1 8.2 0.5 5.5 2 1 2 4 4 3 0 HalX domain TMF_DNA_bd PF12329.8 gi|352682561|ref|YP_004893085.1| - 0.0011 18.9 14.0 0.18 11.8 1.7 4.6 2 1 3 5 5 4 2 TATA element modulatory factor 1 DNA binding TMP_2 PF06791.13 gi|352682561|ref|YP_004893085.1| - 0.0012 18.6 1.5 3.2 7.4 0.1 3.1 1 1 2 3 3 3 0 Prophage tail length tape measure protein MtrG PF04210.13 gi|352682561|ref|YP_004893085.1| - 0.0013 18.6 10.8 0.41 10.5 0.2 5.0 1 1 3 4 4 4 1 Tetrahydromethanopterin S-methyltransferase, subunit G BLOC1_2 PF10046.9 gi|352682561|ref|YP_004893085.1| - 0.0014 18.9 9.5 0.37 11.1 0.9 3.2 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Prefoldin_2 PF01920.20 gi|352682561|ref|YP_004893085.1| - 0.0016 18.3 11.3 4.9 7.2 0.3 4.2 1 1 3 4 4 4 0 Prefoldin subunit SHE3 PF17078.5 gi|352682561|ref|YP_004893085.1| - 0.0019 18.0 8.4 0.0036 17.0 8.4 1.3 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 Prominin PF05478.11 gi|352682561|ref|YP_004893085.1| - 0.0026 15.8 5.4 0.0035 15.4 5.4 1.2 1 0 0 1 1 1 1 Prominin FlxA PF14282.6 gi|352682561|ref|YP_004893085.1| - 0.0026 17.7 6.4 0.015 15.3 0.8 2.9 1 1 2 3 3 3 1 FlxA-like protein GAS PF13851.6 gi|352682561|ref|YP_004893085.1| - 0.0027 17.1 8.3 0.021 14.2 2.5 2.2 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Tropomyosin_1 PF12718.7 gi|352682561|ref|YP_004893085.1| - 0.0027 17.9 12.0 0.8 9.9 0.6 3.1 1 1 2 3 3 3 2 Tropomyosin like COG2 PF06148.11 gi|352682561|ref|YP_004893085.1| - 0.0027 17.8 9.6 1.3 9.1 1.1 3.4 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Spectrin PF00435.21 gi|352682561|ref|YP_004893085.1| - 0.0029 18.1 6.3 1 9.9 6.6 2.7 1 1 0 1 1 1 1 Spectrin repeat DUF3584 PF12128.8 gi|352682561|ref|YP_004893085.1| - 0.0036 14.9 8.5 0.0051 14.4 8.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) RasGAP_C PF03836.15 gi|352682561|ref|YP_004893085.1| - 0.0036 17.4 4.1 4.4 7.5 4.0 3.0 1 1 0 1 1 1 0 RasGAP C-terminus Mt_ATP-synt_D PF05873.12 gi|352682561|ref|YP_004893085.1| - 0.0038 17.1 6.0 0.088 12.7 0.5 3.3 1 1 1 2 2 2 1 ATP synthase D chain, mitochondrial (ATP5H) DUF3450 PF11932.8 gi|352682561|ref|YP_004893085.1| - 0.0038 16.5 10.7 0.063 12.6 4.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) Nup88 PF10168.9 gi|352682561|ref|YP_004893085.1| - 0.0039 15.1 8.2 0.0052 14.7 8.2 1.3 1 0 0 1 1 1 1 Nuclear pore component Nup54 PF13874.6 gi|352682561|ref|YP_004893085.1| - 0.0041 17.2 10.4 0.11 12.6 3.0 2.5 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 KMP11 PF03037.16 gi|352682561|ref|YP_004893085.1| - 0.0043 17.8 3.5 0.64 10.8 0.1 3.3 1 1 2 3 3 3 1 Kinetoplastid membrane protein 11 DUF2802 PF10975.8 gi|352682561|ref|YP_004893085.1| - 0.0048 17.0 6.6 8.7 6.6 0.0 4.5 2 2 1 3 3 3 0 Protein of unknown function (DUF2802) Lebercilin PF15619.6 gi|352682561|ref|YP_004893085.1| - 0.005 16.5 11.3 0.41 10.3 5.2 2.5 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease Atg14 PF10186.9 gi|352682561|ref|YP_004893085.1| - 0.0052 15.9 10.9 0.048 12.7 2.9 2.1 1 1 1 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 T7SS_ESX_EspC PF10824.8 gi|352682561|ref|YP_004893085.1| - 0.0054 17.2 0.9 0.87 10.1 0.4 2.9 1 1 2 3 3 2 1 Excreted virulence factor EspC, type VII ESX diderm Vip3A_N PF12495.8 gi|352682561|ref|YP_004893085.1| - 0.0057 16.6 6.9 0.11 12.3 1.0 2.2 1 1 1 2 2 2 1 Vegetative insecticide protein 3A N terminal ArAE_2 PF10334.9 gi|352682561|ref|YP_004893085.1| - 0.0059 16.5 1.7 2.2 8.1 0.4 2.6 1 1 2 3 3 3 0 Aromatic acid exporter family member 2 DUF2703 PF10865.8 gi|352682561|ref|YP_004893085.1| - 0.0063 16.7 4.6 1.3 9.3 0.8 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2703) CLZ PF16526.5 gi|352682561|ref|YP_004893085.1| - 0.0065 16.8 10.5 0.1 13.0 1.1 3.4 1 1 1 3 3 3 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Dynactin_p22 PF07426.11 gi|352682561|ref|YP_004893085.1| - 0.0065 16.3 8.1 0.032 14.1 8.1 2.0 1 1 0 1 1 1 1 Dynactin subunit p22 IFT57 PF10498.9 gi|352682561|ref|YP_004893085.1| - 0.0069 15.4 7.5 0.086 11.8 4.4 2.2 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 DUF3782 PF12644.7 gi|352682561|ref|YP_004893085.1| - 0.007 16.5 9.9 4 7.6 0.3 4.4 2 1 2 4 4 3 0 Protein of unknown function (DUF3782) XhlA PF10779.9 gi|352682561|ref|YP_004893085.1| - 0.0074 16.5 25.5 2.9 8.2 2.0 4.6 1 1 4 5 5 5 0 Haemolysin XhlA Erythro-docking PF09277.11 gi|352682561|ref|YP_004893085.1| - 0.008 16.0 5.8 7.1 6.6 0.2 5.1 1 1 3 4 4 3 0 Erythronolide synthase, docking SKA2 PF16740.5 gi|352682561|ref|YP_004893085.1| - 0.0082 15.9 7.2 0.089 12.6 2.2 2.7 1 1 1 2 2 2 1 Spindle and kinetochore-associated protein 2 DUF4618 PF15397.6 gi|352682561|ref|YP_004893085.1| - 0.0088 15.5 8.5 0.024 14.1 8.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) DUF4200 PF13863.6 gi|352682561|ref|YP_004893085.1| - 0.0089 16.4 12.7 0.038 14.4 4.9 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4200) Fzo_mitofusin PF04799.13 gi|352682561|ref|YP_004893085.1| - 0.01 15.4 7.8 0.33 10.5 1.9 3.3 1 1 1 2 2 2 0 fzo-like conserved region Stathmin PF00836.19 gi|352682561|ref|YP_004893085.1| - 0.011 15.7 6.5 1.1 9.2 1.1 2.4 1 1 1 2 2 2 0 Stathmin family TMPIT PF07851.13 gi|352682561|ref|YP_004893085.1| - 0.012 14.9 6.4 0.31 10.3 1.0 2.1 1 1 1 2 2 2 0 TMPIT-like protein RPW8 PF05659.11 gi|352682561|ref|YP_004893085.1| - 0.012 15.3 9.7 0.33 10.7 1.3 3.0 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 T3SSipB PF16535.5 gi|352682561|ref|YP_004893085.1| - 0.012 16.1 9.4 0.13 12.7 6.2 2.5 1 1 1 2 2 2 0 Type III cell invasion protein SipB ATF7IP_BD PF16788.5 gi|352682561|ref|YP_004893085.1| - 0.013 15.6 7.0 0.22 11.6 1.1 3.0 1 1 2 3 3 3 0 ATF-interacting protein binding domain Rho_Binding PF08912.11 gi|352682561|ref|YP_004893085.1| - 0.015 16.1 6.7 7.6 7.4 0.2 3.5 1 1 2 3 3 3 0 Rho Binding APG17 PF04108.12 gi|352682561|ref|YP_004893085.1| - 0.015 14.4 10.4 0.22 10.6 4.5 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF812 PF05667.11 gi|352682561|ref|YP_004893085.1| - 0.016 14.1 11.3 0.042 12.7 5.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) SlyX PF04102.12 gi|352682561|ref|YP_004893085.1| - 0.017 15.7 12.4 3.7 8.2 3.6 4.3 1 1 2 3 3 3 0 SlyX Peripla_BP_2 PF01497.18 gi|352682561|ref|YP_004893085.1| - 0.027 14.0 2.2 1 8.9 0.7 2.5 2 1 1 3 3 2 0 Periplasmic binding protein DUF2937 PF11157.8 gi|352682561|ref|YP_004893085.1| - 0.027 14.2 0.8 0.06 13.1 0.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) DUF4795 PF16043.5 gi|352682561|ref|YP_004893085.1| - 0.029 14.0 14.1 0.11 12.1 14.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) TRPM_tetra PF16519.5 gi|352682561|ref|YP_004893085.1| - 0.03 14.4 14.0 3.9 7.7 0.1 5.4 1 1 5 6 6 6 0 Tetramerisation domain of TRPM T3SS_needle_F PF09392.10 gi|352682561|ref|YP_004893085.1| - 0.031 14.4 6.5 0.75 10.0 0.1 4.0 1 1 5 6 6 4 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF DUF5082 PF16888.5 gi|352682561|ref|YP_004893085.1| - 0.032 14.5 13.5 0.5 10.7 10.9 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF2205 PF10224.9 gi|352682561|ref|YP_004893085.1| - 0.035 14.1 13.5 6.7 6.8 1.0 5.0 2 1 3 5 5 5 0 Short coiled-coil protein Phage_GPO PF05929.11 gi|352682561|ref|YP_004893085.1| - 0.035 13.7 8.5 0.2 11.3 1.6 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DivIC PF04977.15 gi|352682561|ref|YP_004893085.1| - 0.036 13.8 12.4 3.3 7.5 0.6 4.5 1 1 3 4 4 4 0 Septum formation initiator CCDC-167 PF15188.6 gi|352682561|ref|YP_004893085.1| - 0.042 14.2 15.5 2.5 8.5 1.2 3.9 1 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 DUF1910 PF08928.10 gi|352682561|ref|YP_004893085.1| - 0.043 13.8 2.8 4.9 7.2 0.5 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) Leu_zip PF15294.6 gi|352682561|ref|YP_004893085.1| - 0.045 13.3 11.8 0.16 11.4 7.5 2.0 1 1 1 2 2 2 0 Leucine zipper FlaC_arch PF05377.11 gi|352682561|ref|YP_004893085.1| - 0.046 14.1 15.1 30 5.1 0.2 4.5 1 1 1 2 2 1 0 Flagella accessory protein C (FlaC) Occludin_ELL PF07303.13 gi|352682561|ref|YP_004893085.1| - 0.048 14.4 3.0 14 6.5 0.2 3.1 1 1 1 2 2 2 0 Occludin homology domain Prefoldin PF02996.17 gi|352682561|ref|YP_004893085.1| - 0.06 13.3 14.1 6.1 6.8 4.3 4.1 1 1 3 4 4 4 0 Prefoldin subunit DUF2203 PF09969.9 gi|352682561|ref|YP_004893085.1| - 0.063 14.0 7.8 3 8.6 0.8 2.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) KH_5 PF13184.6 gi|352682561|ref|YP_004893085.1| - 0.065 13.3 9.0 1.4 9.1 0.2 3.7 1 1 2 3 3 3 0 NusA-like KH domain DUF2730 PF10805.8 gi|352682561|ref|YP_004893085.1| - 0.067 13.3 11.9 1.5 9.0 2.7 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) CorA PF01544.18 gi|352682561|ref|YP_004893085.1| - 0.07 12.4 14.0 0.18 11.1 4.2 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein ACCA PF03255.14 gi|352682561|ref|YP_004893085.1| - 0.07 13.0 11.0 3 7.7 0.3 3.1 1 1 2 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Vps51 PF08700.11 gi|352682561|ref|YP_004893085.1| - 0.079 13.1 7.0 0.51 10.5 1.5 3.2 1 1 1 3 3 2 0 Vps51/Vps67 Matrilin_ccoil PF10393.9 gi|352682561|ref|YP_004893085.1| - 0.087 12.7 7.3 39 4.2 0.2 5.3 2 1 3 5 5 4 0 Trimeric coiled-coil oligomerisation domain of matrilin BshC PF10079.9 gi|352682561|ref|YP_004893085.1| - 0.088 11.5 5.6 0.083 11.6 3.2 1.8 1 1 1 2 2 2 0 Bacillithiol biosynthesis BshC PRKG1_interact PF15898.5 gi|352682561|ref|YP_004893085.1| - 0.089 13.7 11.5 3.3 8.7 3.1 3.2 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain Fez1 PF06818.15 gi|352682561|ref|YP_004893085.1| - 0.092 13.2 8.9 1.8 9.0 8.9 2.3 1 1 0 1 1 1 0 Fez1 Syntaxin PF00804.25 gi|352682561|ref|YP_004893085.1| - 0.094 12.4 13.6 0.29 10.8 3.4 2.3 1 1 1 2 2 2 0 Syntaxin YabA PF06156.13 gi|352682561|ref|YP_004893085.1| - 0.1 13.3 9.2 6.2 7.5 0.4 3.7 1 1 2 3 3 3 0 Initiation control protein YabA MobC PF05713.11 gi|352682561|ref|YP_004893085.1| - 0.12 12.9 9.5 39 4.8 0.1 6.0 1 1 7 8 8 6 0 Bacterial mobilisation protein (MobC) CAF-1_p150 PF11600.8 gi|352682561|ref|YP_004893085.1| - 0.12 12.1 8.5 0.18 11.5 0.6 2.9 1 1 0 2 2 2 0 Chromatin assembly factor 1 complex p150 subunit, N-terminal FAM76 PF16046.5 gi|352682561|ref|YP_004893085.1| - 0.13 11.6 11.9 0.13 11.6 1.9 2.4 1 1 1 2 2 2 0 FAM76 protein TMCO5 PF14992.6 gi|352682561|ref|YP_004893085.1| - 0.14 11.7 7.7 0.28 10.7 7.7 1.5 1 1 0 1 1 1 0 TMCO5 family LUC7 PF03194.15 gi|352682561|ref|YP_004893085.1| - 0.14 11.8 13.2 1.8 8.2 3.0 2.5 1 1 1 2 2 2 0 LUC7 N_terminus TolA_bind_tri PF16331.5 gi|352682561|ref|YP_004893085.1| - 0.14 12.2 8.3 2.7 8.1 0.3 3.9 1 1 1 3 3 3 0 TolA binding protein trimerisation DUF148 PF02520.17 gi|352682561|ref|YP_004893085.1| - 0.14 12.2 11.3 0.85 9.7 4.1 3.0 1 1 1 2 2 2 0 Domain of unknown function DUF148 CPSase_L_D3 PF02787.19 gi|352682561|ref|YP_004893085.1| - 0.15 12.4 4.3 0.15 12.4 1.7 2.1 1 1 1 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HAUS-augmin3 PF14932.6 gi|352682561|ref|YP_004893085.1| - 0.15 11.6 3.6 2.6 7.6 0.7 2.6 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Alpha-E PF04168.12 gi|352682561|ref|YP_004893085.1| - 0.15 11.8 4.2 0.83 9.4 0.4 2.1 1 1 1 2 2 2 0 A predicted alpha-helical domain with a conserved ER motif. DUF1515 PF07439.11 gi|352682561|ref|YP_004893085.1| - 0.18 11.9 18.6 4.2 7.4 2.5 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) DUF4455 PF14643.6 gi|352682561|ref|YP_004893085.1| - 0.18 10.4 8.6 3.3 6.2 9.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) SOAR PF16533.5 gi|352682561|ref|YP_004893085.1| - 0.19 11.7 11.7 2.4 8.2 1.7 3.8 1 1 2 3 3 3 0 STIM1 Orai1-activating region Val_tRNA-synt_C PF10458.9 gi|352682561|ref|YP_004893085.1| - 0.21 11.9 4.5 2.7 8.4 0.1 4.0 2 1 2 4 4 3 0 Valyl tRNA synthetase tRNA binding arm Cut12 PF11500.8 gi|352682561|ref|YP_004893085.1| - 0.23 11.4 9.1 2.8 7.9 1.1 2.9 1 1 1 3 3 3 0 Spindle pole body formation-associated protein DASH_Dad4 PF08650.10 gi|352682561|ref|YP_004893085.1| - 0.24 11.4 8.0 20 5.3 0.5 3.8 2 2 1 3 3 3 0 DASH complex subunit Dad4 TssO PF17561.2 gi|352682561|ref|YP_004893085.1| - 0.28 11.3 9.2 2.7 8.1 2.8 3.3 1 1 1 3 3 3 0 Type VI secretion system, TssO Syntaxin-6_N PF09177.11 gi|352682561|ref|YP_004893085.1| - 0.29 11.7 10.3 1.2 9.8 1.4 2.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Cnn_1N PF07989.11 gi|352682561|ref|YP_004893085.1| - 0.3 11.3 12.5 2.1 8.6 1.0 3.6 2 1 1 3 3 3 0 Centrosomin N-terminal motif 1 MukF_M PF17192.4 gi|352682561|ref|YP_004893085.1| - 0.3 10.8 10.3 0.76 9.5 6.6 2.7 1 1 1 2 2 2 0 MukF middle domain DUF3496 PF12001.8 gi|352682561|ref|YP_004893085.1| - 0.31 11.4 2.4 9.5 6.6 0.0 3.3 1 1 1 3 3 2 0 Domain of unknown function (DUF3496) WASH_WAHD PF11945.8 gi|352682561|ref|YP_004893085.1| - 0.33 10.4 14.4 3.9 6.9 1.2 3.4 1 1 3 4 4 4 0 WAHD domain of WASH complex DUF2959 PF11172.8 gi|352682561|ref|YP_004893085.1| - 0.43 10.7 8.3 8.5 6.5 0.7 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF2959) DUF4854 PF16146.5 gi|352682561|ref|YP_004893085.1| - 0.43 10.9 5.3 5.1 7.5 0.3 3.1 1 1 1 3 3 3 0 Domain of unknown function (DUF4854) DUF4446 PF14584.6 gi|352682561|ref|YP_004893085.1| - 0.45 10.5 8.6 0.83 9.6 0.7 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) DUF724 PF05266.14 gi|352682561|ref|YP_004893085.1| - 0.45 10.3 9.9 4.6 7.0 0.4 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Fibritin_C PF07921.12 gi|352682561|ref|YP_004893085.1| - 0.5 10.5 8.3 2.3 8.4 4.2 2.9 1 1 1 2 2 2 0 Fibritin C-terminal region Mce4_CUP1 PF11887.8 gi|352682561|ref|YP_004893085.1| - 0.5 9.8 5.6 5.3 6.4 2.0 2.7 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Prefoldin_3 PF13758.6 gi|352682561|ref|YP_004893085.1| - 0.52 10.4 15.4 0.33 11.0 1.3 3.9 1 1 1 3 3 3 0 Prefoldin subunit YojJ PF10372.9 gi|352682561|ref|YP_004893085.1| - 0.52 10.4 6.2 13 6.0 0.6 3.8 1 1 2 4 4 3 0 Bacterial membrane-spanning protein N-terminus V_ATPase_I PF01496.19 gi|352682561|ref|YP_004893085.1| - 0.56 8.1 8.4 0.69 7.8 3.4 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family CC2-LZ PF16516.5 gi|352682561|ref|YP_004893085.1| - 0.57 10.6 9.9 3.4 8.1 0.8 3.2 1 1 1 3 3 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator BBP1_C PF15272.6 gi|352682561|ref|YP_004893085.1| - 0.6 9.9 12.8 2.7 7.8 3.4 2.1 1 1 1 2 2 2 0 Spindle pole body component BBP1, C-terminal DUF5403 PF17395.2 gi|352682561|ref|YP_004893085.1| - 0.65 10.3 9.0 6.6 7.1 0.4 3.6 1 1 3 4 4 3 0 Family of unknown function (DUF5403) APG6_N PF17675.1 gi|352682561|ref|YP_004893085.1| - 0.65 10.5 8.4 66 4.0 8.7 2.7 1 1 1 2 2 2 0 Apg6 coiled-coil region Taxilin PF09728.9 gi|352682561|ref|YP_004893085.1| - 0.68 9.0 7.9 2.2 7.4 8.0 1.8 1 1 0 1 1 1 0 Myosin-like coiled-coil protein DUF4140 PF13600.6 gi|352682561|ref|YP_004893085.1| - 0.79 10.2 13.1 7.2e+03 -2.5 13.1 3.9 1 1 0 1 1 0 0 N-terminal domain of unknown function (DUF4140) EDR1 PF14381.6 gi|352682561|ref|YP_004893085.1| - 0.8 9.4 6.0 7 6.3 2.5 2.1 1 1 1 2 2 2 0 Ethylene-responsive protein kinase Le-CTR1 UPF0242 PF06785.11 gi|352682561|ref|YP_004893085.1| - 0.8 9.8 8.5 15 5.6 8.4 2.1 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Snf7 PF03357.21 gi|352682561|ref|YP_004893085.1| - 1 8.9 18.1 0.39 10.3 8.6 2.3 1 1 1 2 2 2 0 Snf7 MIS13 PF08202.11 gi|352682561|ref|YP_004893085.1| - 1 8.6 8.8 8.6 5.5 8.8 2.0 1 1 0 1 1 1 0 Mis12-Mtw1 protein family Syntaxin_2 PF14523.6 gi|352682561|ref|YP_004893085.1| - 1.1 9.7 14.1 5.3e+02 1.0 14.0 3.1 1 1 0 1 1 1 0 Syntaxin-like protein GldM_N PF12081.8 gi|352682561|ref|YP_004893085.1| - 1.3 9.0 8.9 0.71 9.9 2.1 2.2 1 1 1 2 2 2 0 GldM N-terminal domain ISG65-75 PF11727.8 gi|352682561|ref|YP_004893085.1| - 1.4 8.1 10.4 0.53 9.5 3.1 2.2 1 1 2 3 3 3 0 Invariant surface glycoprotein UvrB PF12344.8 gi|352682561|ref|YP_004893085.1| - 1.6 8.7 12.5 3.4 7.6 0.1 5.2 6 0 0 6 6 3 0 Ultra-violet resistance protein B Ax_dynein_light PF10211.9 gi|352682561|ref|YP_004893085.1| - 1.7 8.6 11.2 9.4 6.1 1.2 2.8 1 1 1 2 2 2 0 Axonemal dynein light chain Spc42p PF11544.8 gi|352682561|ref|YP_004893085.1| - 1.9 8.6 9.5 11 6.1 0.6 3.6 1 1 2 4 4 4 0 Spindle pole body component Spc42p Fmp27_WPPW PF10359.9 gi|352682561|ref|YP_004893085.1| - 1.9 7.3 12.8 2.4 6.9 2.2 2.3 1 1 2 3 3 3 0 RNA pol II promoter Fmp27 protein domain BCAS2 PF05700.11 gi|352682561|ref|YP_004893085.1| - 2.4 7.8 10.2 1.6 8.3 1.2 2.9 1 1 2 3 3 3 0 Breast carcinoma amplified sequence 2 (BCAS2) Erp_C PF06780.11 gi|352682561|ref|YP_004893085.1| - 2.7 8.0 16.6 8.5 6.4 0.5 4.5 1 1 2 4 4 4 0 Erp protein C-terminus STAT_alpha PF01017.20 gi|352682561|ref|YP_004893085.1| - 2.7 7.9 7.0 63 3.4 7.0 2.2 1 1 0 1 1 1 0 STAT protein, all-alpha domain CAMSAP_CC1 PF17095.5 gi|352682561|ref|YP_004893085.1| - 3.2 7.7 9.5 9.1 6.2 0.9 4.0 1 1 2 4 4 3 0 Spectrin-binding region of Ca2+-Calmodulin CR6_interact PF10147.9 gi|352682561|ref|YP_004893085.1| - 3.3 7.4 10.2 8.2 6.1 1.2 2.1 1 1 1 2 2 2 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 FemAB PF02388.16 gi|352682561|ref|YP_004893085.1| - 3.7 6.3 8.3 2 7.2 1.0 2.2 1 1 1 2 2 2 0 FemAB family DUF4404 PF14357.6 gi|352682561|ref|YP_004893085.1| - 4 8.1 7.5 5.4 7.7 0.5 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) DUF4094 PF13334.6 gi|352682561|ref|YP_004893085.1| - 4.1 7.9 8.8 7.1 7.1 1.0 3.3 2 1 2 4 4 3 0 Domain of unknown function (DUF4094) MafB PF06255.13 gi|352682561|ref|YP_004893085.1| - 4.6 6.6 6.2 7.7 5.9 0.7 2.4 1 1 1 2 2 2 0 Neisseria toxin MafB EspB PF05802.11 gi|352682561|ref|YP_004893085.1| - 5.3 7.0 14.0 4.3 7.3 4.7 2.3 1 1 1 2 2 2 0 Enterobacterial EspB protein LidA_Long_CC PF18641.1 gi|352682561|ref|YP_004893085.1| - 6 6.9 12.5 16 5.5 3.4 3.4 1 1 2 3 3 3 0 LidA long coiled-coil domain IMS_C PF11799.8 gi|352682561|ref|YP_004893085.1| - 6.1 7.6 6.7 19 6.0 5.3 2.6 2 1 0 2 2 1 0 impB/mucB/samB family C-terminal domain DSX_dimer PF08828.10 gi|352682561|ref|YP_004893085.1| - 7 6.4 7.9 14 5.5 0.2 4.0 4 1 0 4 4 3 0 Doublesex dimerisation domain Phage_holin_3_6 PF07332.11 gi|352682562|ref|YP_004893086.1| - 5.5e-05 23.2 4.7 6.9e-05 22.9 4.7 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Wzy_C PF04932.15 gi|352682562|ref|YP_004893086.1| - 0.008 15.8 0.1 0.0086 15.7 0.1 1.1 1 0 0 1 1 1 1 O-Antigen ligase DUF4131 PF13567.6 gi|352682562|ref|YP_004893086.1| - 0.0098 15.6 0.6 0.011 15.4 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) DUF4574 PF15141.6 gi|352682562|ref|YP_004893086.1| - 0.17 11.8 1.3 0.3 11.0 0.0 1.9 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 DUF2207 PF09972.9 gi|352682562|ref|YP_004893086.1| - 0.23 10.2 0.1 0.25 10.1 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) T2SSM PF04612.12 gi|352682562|ref|YP_004893086.1| - 0.73 9.9 6.8 5.1 7.1 0.1 2.1 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M Glyco_trans_1_4 PF13692.6 gi|352682563|ref|YP_004893087.1| - 4e-15 56.4 0.0 1.3e-14 54.8 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|352682563|ref|YP_004893087.1| - 4.1e-14 52.5 0.0 5.8e-13 48.7 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682563|ref|YP_004893087.1| - 4.6e-08 33.2 5.1 1.2e-07 31.8 5.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|352682563|ref|YP_004893087.1| - 4.8e-08 33.6 11.3 4.8e-08 33.6 11.3 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|352682563|ref|YP_004893087.1| - 0.0091 16.4 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Spore_YhcN_YlaJ PF09580.10 gi|352682564|ref|YP_004893088.1| - 0.18 11.9 0.2 0.23 11.5 0.2 1.2 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LysE PF01810.18 gi|352682566|ref|YP_004893090.1| - 0.0023 17.4 8.0 0.024 14.1 1.5 2.6 2 0 0 2 2 2 2 LysE type translocator DsbD_2 PF13386.6 gi|352682566|ref|YP_004893090.1| - 0.035 14.0 17.1 0.072 13.0 13.8 2.6 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region Phage_holin_3_2 PF04550.12 gi|352682566|ref|YP_004893090.1| - 0.076 13.6 0.5 0.076 13.6 0.5 2.6 2 0 0 2 2 2 0 Phage holin family 2 NicO PF03824.16 gi|352682566|ref|YP_004893090.1| - 0.16 11.2 3.9 0.056 12.8 0.6 1.9 2 0 0 2 2 2 0 High-affinity nickel-transport protein SdpI PF13630.6 gi|352682566|ref|YP_004893090.1| - 0.19 11.9 0.2 0.19 11.9 0.2 3.3 3 2 0 3 3 3 0 SdpI/YhfL protein family Hydantoinase_B PF02538.14 gi|352682567|ref|YP_004893091.1| - 3.8e-36 124.6 2.8 4.2e-36 124.4 2.8 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase ThiS PF02597.20 gi|352682567|ref|YP_004893091.1| - 0.0038 17.8 0.1 0.0049 17.5 0.1 1.2 1 0 0 1 1 1 1 ThiS family Myosin_N PF02736.19 gi|352682567|ref|YP_004893091.1| - 0.042 13.7 3.3 0.54 10.1 0.4 2.2 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Hydantoinase_B PF02538.14 gi|352682568|ref|YP_004893092.1| - 3.5e-125 418.3 0.0 3.9e-125 418.2 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|352682569|ref|YP_004893093.1| - 2.8e-95 318.9 8.9 8.7e-95 317.3 3.8 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|352682569|ref|YP_004893093.1| - 3.3e-46 157.2 0.0 6.4e-46 156.3 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|352682569|ref|YP_004893093.1| - 0.00058 19.4 0.1 0.011 15.3 0.0 2.2 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Sugar_tr PF00083.24 gi|352682570|ref|YP_004893094.1| - 3.8e-23 82.1 26.7 2.3e-19 69.6 10.3 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|352682570|ref|YP_004893094.1| - 4.8e-23 81.7 64.2 1.5e-14 53.7 31.3 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|352682570|ref|YP_004893094.1| - 0.44 9.0 39.4 0.2 10.2 4.9 3.3 1 1 1 3 3 3 0 MFS/sugar transport protein SurE PF01975.17 gi|352682571|ref|YP_004893095.1| - 2.3e-48 164.6 0.0 3.1e-48 164.2 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE LMBR1 PF04791.16 gi|352682572|ref|YP_004893096.1| - 0.092 11.6 1.0 0.11 11.4 1.0 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF998 PF06197.13 gi|352682573|ref|YP_004893097.1| - 2.1e-20 73.1 23.3 2.4e-20 72.9 23.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Frag1 PF10277.9 gi|352682573|ref|YP_004893097.1| - 0.0013 18.3 1.0 0.0023 17.5 1.1 1.5 1 1 0 1 1 1 1 Frag1/DRAM/Sfk1 family AA_permease PF00324.21 gi|352682574|ref|YP_004893098.1| - 5.2e-26 91.3 44.9 8.4e-26 90.6 44.9 1.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|352682574|ref|YP_004893098.1| - 1.8e-22 79.8 47.1 3.6e-22 78.8 47.1 1.4 1 1 0 1 1 1 1 Amino acid permease DUF3627 PF12299.8 gi|352682575|ref|YP_004893099.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3627) Plasmo_rep PF12135.8 gi|352682575|ref|YP_004893099.1| - 0.13 11.9 0.4 0.19 11.3 0.4 1.2 1 0 0 1 1 1 0 Plasmodium repeat family TauE PF01925.19 gi|352682577|ref|YP_004893101.1| - 2.6e-50 171.2 39.7 3e-50 171.1 39.7 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1304 PF06993.12 gi|352682577|ref|YP_004893101.1| - 0.034 14.1 0.4 0.034 14.1 0.4 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1304) DsbD_2 PF13386.6 gi|352682577|ref|YP_004893101.1| - 2.3 8.1 24.6 0.77 9.6 5.9 3.5 2 1 0 3 3 3 0 Cytochrome C biogenesis protein transmembrane region MFS_1 PF07690.16 gi|352682578|ref|YP_004893102.1| - 6.4e-24 84.5 47.7 4.2e-12 45.6 26.9 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|352682578|ref|YP_004893102.1| - 0.0042 16.4 26.4 0.0057 16.0 26.4 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF2198 PF09964.9 gi|352682579|ref|YP_004893103.1| - 5.8 7.1 11.1 0.57 10.3 5.7 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2198) DUF3487 PF11990.8 gi|352682579|ref|YP_004893103.1| - 7.1 6.5 8.4 0.65 9.9 3.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) CxxCxxCC PF03692.15 gi|352682580|ref|YP_004893104.1| - 3.9e-06 27.4 0.0 9.3e-06 26.2 0.0 1.7 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Lactamase_B_3 PF13483.6 gi|352682581|ref|YP_004893105.1| - 6.4e-09 35.9 0.1 1.4e-08 34.8 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|352682581|ref|YP_004893105.1| - 1.5e-08 34.4 0.3 4.1e-08 33.0 0.2 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|352682581|ref|YP_004893105.1| - 0.0008 19.5 8.4 0.019 15.0 7.8 2.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|352682581|ref|YP_004893105.1| - 0.1 12.1 0.0 0.61 9.5 0.0 1.9 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain AFOR_C PF01314.18 gi|352682582|ref|YP_004893106.1| - 8.6e-116 387.1 0.0 1e-115 386.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|352682582|ref|YP_004893106.1| - 1.4e-78 263.4 0.4 2.1e-78 262.7 0.4 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Phosphorylase PF00343.20 gi|352682583|ref|YP_004893107.1| - 6.9e-14 51.1 0.0 1.3e-13 50.2 0.0 1.5 1 1 0 1 1 1 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|352682583|ref|YP_004893107.1| - 9.4e-11 41.5 0.0 1.9e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682583|ref|YP_004893107.1| - 1.3e-08 35.3 0.0 5.3e-08 33.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 5-FTHF_cyc-lig PF01812.20 gi|352682584|ref|YP_004893108.1| - 1.3e-31 109.9 0.0 1.6e-31 109.6 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Glyco_hydro_57 PF03065.15 gi|352682585|ref|YP_004893109.1| - 4.5e-65 220.0 0.0 6.5e-65 219.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|352682585|ref|YP_004893109.1| - 0.019 14.9 0.0 0.037 13.9 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase Glyco_transf_5 PF08323.11 gi|352682586|ref|YP_004893110.1| - 1.5e-35 123.1 0.0 2.4e-35 122.4 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|352682586|ref|YP_004893110.1| - 2.6e-26 92.2 0.0 6.2e-26 91.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|352682586|ref|YP_004893110.1| - 1.5e-18 67.5 0.2 8.5e-18 65.1 0.2 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|352682586|ref|YP_004893110.1| - 2.1e-11 44.1 1.8 4.7e-10 39.7 1.8 2.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|352682586|ref|YP_004893110.1| - 3.1e-11 44.0 2.0 3.1e-11 44.0 2.0 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain NTP_transferase PF00483.23 gi|352682587|ref|YP_004893111.1| - 1.2e-35 123.2 0.0 1.4e-35 123.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|352682587|ref|YP_004893111.1| - 0.00089 19.6 0.0 0.00092 19.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF3686 PF12458.8 gi|352682587|ref|YP_004893111.1| - 0.011 14.3 0.1 0.015 13.8 0.1 1.1 1 0 0 1 1 1 0 ATPase involved in DNA repair Trp_syntA PF00290.20 gi|352682588|ref|YP_004893112.1| - 2.7e-18 65.8 0.0 4.2e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PALP PF00291.25 gi|352682589|ref|YP_004893113.1| - 2.2e-44 152.0 0.4 2.7e-44 151.8 0.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glycos_transf_3 PF00591.21 gi|352682590|ref|YP_004893114.1| - 2.8e-82 276.1 0.0 3.7e-82 275.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|352682590|ref|YP_004893114.1| - 4.6e-15 55.2 1.2 4.6e-15 55.2 1.2 2.0 3 0 0 3 3 3 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|352682591|ref|YP_004893115.1| - 1.6e-17 63.9 0.0 1.9e-17 63.7 0.0 1.1 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TMF_TATA_bd PF12325.8 gi|352682592|ref|YP_004893116.1| - 0.036 14.3 1.2 0.065 13.4 1.2 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding FUSC PF04632.12 gi|352682592|ref|YP_004893116.1| - 0.12 10.9 5.0 0.18 10.3 5.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Isochorismatase PF00857.20 gi|352682593|ref|YP_004893117.1| - 6.6e-36 124.1 0.0 7.4e-36 123.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family ATPase PF06745.13 gi|352682594|ref|YP_004893118.1| - 1.1e-47 162.4 0.2 3e-24 85.7 0.0 2.1 2 0 0 2 2 2 2 KaiC Rad51 PF08423.11 gi|352682594|ref|YP_004893118.1| - 3.7e-08 33.0 0.0 7.2e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|352682594|ref|YP_004893118.1| - 3.3e-06 26.8 0.0 6.6e-06 25.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|352682594|ref|YP_004893118.1| - 9.1e-06 25.2 0.0 0.00035 20.0 0.0 2.7 2 1 0 3 3 3 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|352682594|ref|YP_004893118.1| - 9.9e-06 25.4 0.0 3.1e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein GvpD PF07088.11 gi|352682594|ref|YP_004893118.1| - 1e-05 24.4 0.1 0.049 12.2 0.0 2.5 2 1 1 3 3 3 2 GvpD gas vesicle protein RecA PF00154.21 gi|352682594|ref|YP_004893118.1| - 0.00026 20.6 0.0 0.0004 19.9 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein DUF2075 PF09848.9 gi|352682594|ref|YP_004893118.1| - 0.0021 17.4 0.0 0.003 16.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) PAXNEB PF05625.11 gi|352682594|ref|YP_004893118.1| - 0.0083 15.3 0.0 0.034 13.3 0.0 1.8 2 0 0 2 2 2 1 PAXNEB protein AAA_16 PF13191.6 gi|352682594|ref|YP_004893118.1| - 0.0092 16.4 0.0 0.017 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|352682594|ref|YP_004893118.1| - 0.0094 16.0 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|352682594|ref|YP_004893118.1| - 0.016 14.9 0.0 0.035 13.8 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_22 PF13401.6 gi|352682594|ref|YP_004893118.1| - 0.023 15.0 0.0 0.086 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.9 gi|352682594|ref|YP_004893118.1| - 0.048 12.8 0.0 0.091 11.9 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_24 PF13479.6 gi|352682594|ref|YP_004893118.1| - 0.049 13.3 0.0 0.55 9.9 0.0 2.5 1 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|352682594|ref|YP_004893118.1| - 0.052 13.0 0.0 0.084 12.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein MEDS PF14417.6 gi|352682594|ref|YP_004893118.1| - 0.058 13.2 0.0 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_30 PF13604.6 gi|352682594|ref|YP_004893118.1| - 0.095 12.4 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RecT PF03837.14 gi|352682594|ref|YP_004893118.1| - 0.12 11.9 0.0 0.53 9.7 0.0 1.9 2 0 0 2 2 2 0 RecT family Ribosomal_L30 PF00327.20 gi|352682595|ref|YP_004893119.1| - 1.8e-07 30.9 0.1 2.9e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.15 gi|352682596|ref|YP_004893120.1| - 9.5e-24 82.7 0.0 1.9e-23 81.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|352682596|ref|YP_004893120.1| - 2.5e-23 81.8 0.2 4.8e-23 80.9 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain RNase_HII PF01351.18 gi|352682597|ref|YP_004893121.1| - 4.1e-39 134.5 0.0 4.8e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Ribosomal_L37e PF01907.19 gi|352682598|ref|YP_004893122.1| - 0.0067 16.6 0.2 0.0078 16.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e DUF629 PF04780.12 gi|352682598|ref|YP_004893122.1| - 0.022 13.3 0.0 0.023 13.3 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF629) zf-C2H2_3rep PF18868.1 gi|352682598|ref|YP_004893122.1| - 0.055 14.1 0.1 0.058 14.1 0.1 1.1 1 0 0 1 1 1 0 Zinc finger C2H2-type, 3 repeats ROS_MUCR PF05443.11 gi|352682598|ref|YP_004893122.1| - 0.061 13.4 0.0 0.064 13.3 0.0 1.1 1 0 0 1 1 1 0 ROS/MUCR transcriptional regulator protein HEPN PF05168.14 gi|352682599|ref|YP_004893123.1| - 1.4e-06 28.4 0.1 2.6e-05 24.3 0.1 2.1 1 1 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|352682599|ref|YP_004893123.1| - 0.0094 15.9 0.2 0.018 15.0 0.0 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN_AbiV PF18728.1 gi|352682599|ref|YP_004893123.1| - 0.088 13.0 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 AbiV UDG PF03167.19 gi|352682600|ref|YP_004893124.1| - 3.2e-38 131.1 0.0 3.8e-38 130.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ribosomal_L27A PF00828.19 gi|352682601|ref|YP_004893125.1| - 2.6e-20 73.4 0.5 2.6e-20 73.4 0.5 1.4 1 1 1 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF5603 PF18231.1 gi|352682601|ref|YP_004893125.1| - 0.039 14.3 0.0 0.06 13.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5603) SecY PF00344.20 gi|352682602|ref|YP_004893126.1| - 3.4e-47 161.2 15.5 4.6e-47 160.8 15.5 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|352682602|ref|YP_004893126.1| - 0.0034 17.2 0.2 0.009 15.8 0.2 1.8 1 0 0 1 1 1 1 Plug domain of Sec61p Methyltrn_RNA_3 PF02598.17 gi|352682603|ref|YP_004893127.1| - 1.5e-49 169.1 0.0 1.7e-49 168.9 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase VKOR PF07884.14 gi|352682604|ref|YP_004893128.1| - 8.8e-09 35.6 8.1 1.8e-08 34.6 8.1 1.5 1 1 0 1 1 1 1 Vitamin K epoxide reductase family DsbD PF02683.15 gi|352682608|ref|YP_004893132.1| - 4.1e-15 56.3 20.9 4.5e-14 52.9 20.6 2.1 1 1 1 2 2 2 2 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|352682608|ref|YP_004893132.1| - 2.7e-05 24.2 19.8 2.7e-05 24.2 19.8 2.9 2 1 1 3 3 3 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_7 PF13899.6 gi|352682608|ref|YP_004893132.1| - 0.0043 17.2 0.0 0.0071 16.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|352682608|ref|YP_004893132.1| - 0.027 14.9 0.0 0.11 13.0 0.0 2.0 1 1 0 1 1 1 0 Thioredoxin-like domain Ribosomal_L6 PF00347.23 gi|352682609|ref|YP_004893133.1| - 1.3e-13 51.4 4.4 3.4e-08 34.0 0.4 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Thioredoxin PF00085.20 gi|352682610|ref|YP_004893134.1| - 7e-09 35.6 0.0 1.1e-08 35.0 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|352682610|ref|YP_004893134.1| - 0.00084 19.8 0.6 0.0056 17.1 0.6 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|352682610|ref|YP_004893134.1| - 0.0088 15.8 1.9 1.5 8.6 0.3 2.1 1 1 1 2 2 2 2 DSBA-like thioredoxin domain TraF PF13728.6 gi|352682610|ref|YP_004893134.1| - 0.009 15.9 0.1 0.02 14.7 0.1 1.6 1 1 0 1 1 1 1 F plasmid transfer operon protein FANCL_C PF11793.8 gi|352682610|ref|YP_004893134.1| - 0.021 15.0 0.3 0.032 14.4 0.3 1.2 1 0 0 1 1 1 0 FANCL C-terminal domain Thioredoxin_3 PF13192.6 gi|352682610|ref|YP_004893134.1| - 0.025 14.6 0.0 0.047 13.7 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain Pyr_redox_2 PF07992.14 gi|352682611|ref|YP_004893135.1| - 1e-68 231.7 3.7 1.3e-68 231.4 3.7 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352682611|ref|YP_004893135.1| - 5.1e-26 91.0 8.2 2.9e-21 75.8 0.9 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|352682611|ref|YP_004893135.1| - 1.9e-17 63.5 0.1 3.9e-17 62.5 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|352682611|ref|YP_004893135.1| - 6.8e-17 61.7 0.8 3.6e-14 52.7 0.0 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|352682611|ref|YP_004893135.1| - 2e-11 44.1 13.7 0.00077 19.1 0.1 4.2 2 2 2 4 4 4 4 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|352682611|ref|YP_004893135.1| - 2.6e-08 33.0 11.8 0.022 13.5 0.0 4.3 3 1 1 4 4 4 4 HI0933-like protein NAD_binding_8 PF13450.6 gi|352682611|ref|YP_004893135.1| - 1.8e-07 31.3 4.8 0.00084 19.5 0.4 3.4 4 0 0 4 4 4 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|352682611|ref|YP_004893135.1| - 1.1e-05 24.8 7.7 0.02 14.2 0.3 2.7 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|352682611|ref|YP_004893135.1| - 2e-05 23.9 0.2 0.0032 16.7 0.0 2.4 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|352682611|ref|YP_004893135.1| - 5.2e-05 23.3 9.0 0.21 11.5 0.1 4.1 4 0 0 4 4 4 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|352682611|ref|YP_004893135.1| - 0.00011 21.4 13.5 0.028 13.5 0.3 3.7 2 2 2 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|352682611|ref|YP_004893135.1| - 0.00064 19.2 16.7 0.35 10.2 0.2 4.1 3 1 0 3 3 3 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|352682611|ref|YP_004893135.1| - 0.0036 16.7 0.6 0.025 13.9 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|352682611|ref|YP_004893135.1| - 0.0039 16.5 0.2 0.0095 15.3 0.0 1.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|352682611|ref|YP_004893135.1| - 0.0049 17.3 1.0 3.6 8.1 0.2 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|352682611|ref|YP_004893135.1| - 0.015 14.2 0.5 0.015 14.2 0.5 2.5 3 0 0 3 3 3 0 Tryptophan halogenase 3HCDH_N PF02737.18 gi|352682611|ref|YP_004893135.1| - 0.019 14.9 0.1 0.019 14.9 0.1 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|352682611|ref|YP_004893135.1| - 0.028 13.5 4.9 0.045 12.8 0.7 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein F420_oxidored PF03807.17 gi|352682611|ref|YP_004893135.1| - 0.092 13.3 2.4 1.2 9.8 0.0 2.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_2 PF00890.24 gi|352682611|ref|YP_004893135.1| - 0.11 11.6 20.4 1.4 7.9 4.7 4.5 2 2 2 5 5 5 0 FAD binding domain GMC_oxred_N PF00732.19 gi|352682611|ref|YP_004893135.1| - 0.11 11.8 0.0 0.31 10.4 0.0 1.8 2 0 0 2 2 1 0 GMC oxidoreductase Rossmann-like PF10727.9 gi|352682611|ref|YP_004893135.1| - 0.52 10.2 3.1 7.7 6.4 0.0 3.3 4 0 0 4 4 4 0 Rossmann-like domain Ldh_1_N PF00056.23 gi|352682612|ref|YP_004893136.1| - 1.1e-39 135.7 0.4 1.5e-39 135.3 0.4 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|352682612|ref|YP_004893136.1| - 9.9e-16 58.1 0.0 2.6e-15 56.8 0.0 1.6 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|352682612|ref|YP_004893136.1| - 8.1e-05 22.3 0.0 0.00024 20.7 0.0 1.8 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|352682612|ref|YP_004893136.1| - 0.0078 15.8 2.1 0.019 14.6 2.1 1.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PEP_hydrolase PF09370.10 gi|352682612|ref|YP_004893136.1| - 0.11 11.7 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate hydrolase-like Ku_C PF03730.14 gi|352682613|ref|YP_004893137.1| - 0.11 13.2 7.8 0.15 12.8 7.8 1.2 1 0 0 1 1 1 0 Ku70/Ku80 C-terminal arm Peptidase_S49_N PF08496.10 gi|352682613|ref|YP_004893137.1| - 1.1 9.3 9.3 1.3 9.1 9.3 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Thioredoxin_3 PF13192.6 gi|352682614|ref|YP_004893138.1| - 3.1e-15 56.0 0.3 4.3e-10 39.5 0.1 2.5 3 0 0 3 3 3 2 Thioredoxin domain Thioredoxin PF00085.20 gi|352682614|ref|YP_004893138.1| - 1e-08 35.1 0.0 1.1e-06 28.6 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin TraF PF13728.6 gi|352682614|ref|YP_004893138.1| - 9.5e-06 25.6 0.0 9.5e-05 22.3 0.0 2.1 2 0 0 2 2 2 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|352682614|ref|YP_004893138.1| - 0.0012 19.3 0.3 0.014 15.9 0.2 2.5 2 1 0 2 2 2 1 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|352682614|ref|YP_004893138.1| - 0.0077 16.4 1.0 0.2 11.9 0.1 3.0 3 0 0 3 3 3 1 Glutaredoxin HyaE PF07449.11 gi|352682614|ref|YP_004893138.1| - 0.064 13.2 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE DSBA PF01323.20 gi|352682614|ref|YP_004893138.1| - 0.088 12.6 0.0 0.23 11.2 0.0 1.8 1 0 0 1 1 1 0 DSBA-like thioredoxin domain TrbC_Ftype PF09673.10 gi|352682614|ref|YP_004893138.1| - 0.16 12.1 0.3 1.5 8.9 0.0 2.5 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein Ham1p_like PF01725.16 gi|352682615|ref|YP_004893139.1| - 4.6e-48 163.6 0.0 5.1e-48 163.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family CBS PF00571.28 gi|352682616|ref|YP_004893140.1| - 8.6e-46 154.2 11.3 4.5e-14 52.6 0.0 4.1 4 0 0 4 4 4 4 CBS domain DUF3659 PF12396.8 gi|352682616|ref|YP_004893140.1| - 0.049 13.6 2.7 11 6.1 0.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3659) FliG_N PF14842.6 gi|352682616|ref|YP_004893140.1| - 0.13 12.9 0.1 0.35 11.4 0.0 1.7 2 0 0 2 2 2 0 FliG N-terminal domain DEAD PF00270.29 gi|352682618|ref|YP_004893142.1| - 1.4e-32 112.8 0.0 4.5e-32 111.2 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|352682618|ref|YP_004893142.1| - 1.2e-29 103.5 0.4 4.3e-29 101.7 0.4 2.0 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.31 gi|352682618|ref|YP_004893142.1| - 4.7e-17 62.3 0.0 2.6e-16 59.9 0.0 2.2 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|352682618|ref|YP_004893142.1| - 3.6e-11 43.4 0.0 6.6e-11 42.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|352682618|ref|YP_004893142.1| - 0.012 15.9 0.0 0.037 14.4 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|352682618|ref|YP_004893142.1| - 0.026 14.8 3.0 3.3 8.0 0.6 4.3 3 1 0 3 3 3 0 AAA domain HypA PF01155.19 gi|352682618|ref|YP_004893142.1| - 0.068 13.2 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_25 PF13481.6 gi|352682618|ref|YP_004893142.1| - 0.27 10.8 1.7 1.8 8.1 0.2 3.0 3 1 0 3 3 3 0 AAA domain HpcH_HpaI PF03328.14 gi|352682620|ref|YP_004893144.1| - 1.1e-38 132.5 2.4 2.2e-37 128.3 0.5 2.4 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|352682620|ref|YP_004893144.1| - 8.1e-15 54.8 0.0 5.6e-10 38.9 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold CoA_transf_3 PF02515.17 gi|352682621|ref|YP_004893145.1| - 1.1e-82 278.1 0.0 1.3e-82 277.8 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III AMP-binding PF00501.28 gi|352682622|ref|YP_004893146.1| - 3.2e-81 273.1 0.0 4e-81 272.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|352682622|ref|YP_004893146.1| - 2.9e-26 92.3 1.6 5.7e-26 91.3 0.9 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MFS_1 PF07690.16 gi|352682623|ref|YP_004893147.1| - 7.2e-23 81.1 77.9 4.1e-17 62.1 42.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|352682623|ref|YP_004893147.1| - 7.7e-15 54.7 38.9 4.2e-11 42.4 15.6 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter Methyltransf_11 PF08241.12 gi|352682624|ref|YP_004893148.1| - 7.4e-10 39.4 0.0 1.3e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352682624|ref|YP_004893148.1| - 9.2e-08 32.7 0.0 2.6e-07 31.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352682624|ref|YP_004893148.1| - 5.8e-06 26.2 0.0 7.1e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352682624|ref|YP_004893148.1| - 0.00074 20.2 0.0 0.012 16.4 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Radical_SAM_C PF16199.5 gi|352682625|ref|YP_004893149.1| - 5.3e-26 90.4 0.1 9.6e-26 89.6 0.1 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|352682625|ref|YP_004893149.1| - 9.4e-24 84.7 0.0 2.6e-23 83.2 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Acetyltransf_10 PF13673.7 gi|352682625|ref|YP_004893149.1| - 1.7e-05 24.7 0.0 3.8e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|352682625|ref|YP_004893149.1| - 2.5e-05 24.5 0.1 5.5e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|352682625|ref|YP_004893149.1| - 0.026 15.0 0.0 0.051 14.0 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Mcl1_mid PF12341.8 gi|352682626|ref|YP_004893150.1| - 0.0025 17.2 1.6 0.049 13.0 0.2 2.4 2 0 0 2 2 2 1 Minichromosome loss protein, Mcl1, middle region PQQ_3 PF13570.6 gi|352682626|ref|YP_004893150.1| - 0.012 16.1 2.1 0.012 16.1 2.1 7.4 7 2 2 9 9 9 0 PQQ-like domain NAGPA PF09992.9 gi|352682626|ref|YP_004893150.1| - 0.051 13.8 0.1 0.91 9.7 0.0 2.5 2 0 0 2 2 2 0 Phosphodiester glycosidase TLP1_add_C PF18313.1 gi|352682626|ref|YP_004893150.1| - 0.07 13.1 0.9 0.81 9.7 0.1 2.5 2 0 0 2 2 2 0 Thiolase-like protein type 1 additional C-terminal domain VID27 PF08553.10 gi|352682626|ref|YP_004893150.1| - 0.092 11.8 0.2 0.16 11.0 0.2 1.3 1 0 0 1 1 1 0 VID27 C-terminal WD40-like domain Frtz PF11768.8 gi|352682626|ref|YP_004893150.1| - 0.1 10.9 0.0 0.15 10.3 0.0 1.1 1 0 0 1 1 1 0 WD repeat-containing and planar cell polarity effector protein Fritz UPF0051 PF01458.17 gi|352682627|ref|YP_004893151.1| - 1.1e-25 90.6 0.0 3e-24 85.9 0.0 2.0 2 0 0 2 2 2 2 Uncharacterized protein family (UPF0051) NUDIX PF00293.28 gi|352682628|ref|YP_004893152.1| - 2.3e-20 73.0 0.4 2.6e-20 72.8 0.4 1.0 1 0 0 1 1 1 1 NUDIX domain Ribosomal_L34 PF00468.17 gi|352682628|ref|YP_004893152.1| - 0.15 12.0 2.7 1.2 9.1 0.3 2.2 2 0 0 2 2 2 0 Ribosomal protein L34 Topoisom_bac PF01131.20 gi|352682630|ref|YP_004893154.1| - 5.5e-107 358.3 0.0 6.6e-107 358.1 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|352682630|ref|YP_004893154.1| - 2e-16 60.1 0.0 5.1e-16 58.8 0.0 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|352682630|ref|YP_004893154.1| - 0.025 15.0 0.0 0.076 13.5 0.0 1.9 2 0 0 2 2 2 0 Toprim domain Toprim_2 PF13155.6 gi|352682630|ref|YP_004893154.1| - 0.096 13.1 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 Toprim-like UB2H PF14814.6 gi|352682630|ref|YP_004893154.1| - 0.12 12.4 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 Bifunctional transglycosylase second domain Helicase_C_2 PF13307.6 gi|352682632|ref|YP_004893156.1| - 4.9e-25 88.7 0.0 9.3e-25 87.8 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|352682632|ref|YP_004893156.1| - 3.1e-16 59.5 0.0 6.8e-16 58.4 0.0 1.6 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|352682632|ref|YP_004893156.1| - 3.2e-09 36.8 0.0 1.2e-06 28.5 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|352682632|ref|YP_004893156.1| - 3.1e-07 30.6 0.0 2.2e-06 27.8 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|352682632|ref|YP_004893156.1| - 0.0025 17.4 0.1 0.014 15.0 0.0 2.2 3 0 0 3 3 3 1 AAA domain PhoH PF02562.16 gi|352682632|ref|YP_004893156.1| - 0.01 15.3 0.1 0.026 14.0 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein AAA_30 PF13604.6 gi|352682632|ref|YP_004893156.1| - 0.021 14.6 0.3 0.46 10.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|352682632|ref|YP_004893156.1| - 0.081 13.2 0.0 7.3 6.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain DAO PF01266.24 gi|352682633|ref|YP_004893157.1| - 3.8e-40 138.6 0.7 4.6e-40 138.3 0.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|352682633|ref|YP_004893157.1| - 2.9e-07 30.6 0.3 8.2e-07 29.2 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|352682633|ref|YP_004893157.1| - 4.5e-05 22.8 0.7 9e-05 21.9 0.4 1.6 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|352682633|ref|YP_004893157.1| - 4.6e-05 22.8 1.1 0.011 14.9 0.2 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|352682633|ref|YP_004893157.1| - 7.5e-05 22.0 0.7 9.8e-05 21.6 0.1 1.4 2 0 0 2 2 2 1 FAD binding domain DUF1884 PF08967.10 gi|352682633|ref|YP_004893157.1| - 0.0009 19.4 0.2 0.5 10.7 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1884) Pyr_redox PF00070.27 gi|352682633|ref|YP_004893157.1| - 0.003 18.1 0.3 0.007 16.9 0.3 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|352682633|ref|YP_004893157.1| - 0.007 16.0 0.3 0.014 15.0 0.3 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|352682633|ref|YP_004893157.1| - 0.01 14.7 0.2 0.14 10.9 0.1 2.0 2 0 0 2 2 2 0 Tryptophan halogenase HI0933_like PF03486.14 gi|352682633|ref|YP_004893157.1| - 0.012 14.4 0.2 0.028 13.1 0.1 1.6 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.16 gi|352682633|ref|YP_004893157.1| - 0.019 14.6 0.1 0.031 13.9 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|352682633|ref|YP_004893157.1| - 0.022 15.2 0.0 0.049 14.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox_3 PF13738.6 gi|352682633|ref|YP_004893157.1| - 0.028 13.7 0.1 0.09 12.0 0.1 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|352682633|ref|YP_004893157.1| - 0.057 12.6 0.8 0.12 11.6 0.1 1.8 2 0 0 2 2 2 0 Thi4 family Lycopene_cycl PF05834.12 gi|352682633|ref|YP_004893157.1| - 0.096 11.7 0.3 6.1 5.8 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.22 gi|352682633|ref|YP_004893157.1| - 0.47 9.5 1.0 0.84 8.7 0.4 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A AA_permease_2 PF13520.6 gi|352682634|ref|YP_004893158.1| - 7.5e-13 48.1 16.7 9.6e-13 47.7 16.7 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|352682634|ref|YP_004893158.1| - 1.9e-10 39.9 16.1 1e-09 37.5 16.1 1.9 1 1 0 1 1 1 1 Amino acid permease SNO PF01174.19 gi|352682634|ref|YP_004893158.1| - 0.053 13.4 0.1 0.44 10.4 0.0 2.3 1 1 2 3 3 3 0 SNO glutamine amidotransferase family EcsB PF05975.12 gi|352682634|ref|YP_004893158.1| - 2.5 6.9 11.6 0.21 10.4 6.6 1.6 1 1 0 1 1 1 0 Bacterial ABC transporter protein EcsB AA_permease PF00324.21 gi|352682635|ref|YP_004893159.1| - 2.5e-10 39.6 11.9 2.8e-10 39.4 11.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|352682635|ref|YP_004893159.1| - 1.7e-05 23.8 13.2 2e-05 23.6 13.2 1.0 1 0 0 1 1 1 1 Amino acid permease TMP_2 PF06791.13 gi|352682635|ref|YP_004893159.1| - 0.012 15.3 0.1 0.019 14.7 0.1 1.2 1 0 0 1 1 1 0 Prophage tail length tape measure protein Helicase_RecD PF05127.14 gi|352682636|ref|YP_004893160.1| - 3.3e-55 186.7 0.0 5e-55 186.1 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|352682636|ref|YP_004893160.1| - 1.3e-42 145.8 0.0 2e-29 102.6 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|352682636|ref|YP_004893160.1| - 2e-31 107.8 0.0 1.4e-30 105.0 0.0 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|352682636|ref|YP_004893160.1| - 8e-05 22.9 0.1 0.00025 21.3 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|352682636|ref|YP_004893160.1| - 0.064 13.7 0.1 0.19 12.2 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain TPP_enzyme_C PF02775.21 gi|352682637|ref|YP_004893161.1| - 8.4e-35 119.8 0.2 1.5e-34 119.0 0.2 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|352682637|ref|YP_004893161.1| - 6.2e-23 80.7 0.1 1.4e-22 79.5 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|352682638|ref|YP_004893162.1| - 1.9e-55 188.1 0.2 2.9e-55 187.5 0.2 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|352682638|ref|YP_004893162.1| - 2.2e-28 99.5 0.2 5e-28 98.4 0.2 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Macro PF01661.21 gi|352682640|ref|YP_004893164.1| - 1.9e-35 121.5 0.1 2.4e-35 121.1 0.1 1.1 1 0 0 1 1 1 1 Macro domain Lactamase_B PF00753.27 gi|352682641|ref|YP_004893165.1| - 2.9e-21 76.4 2.8 4.8e-21 75.7 2.8 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|352682641|ref|YP_004893165.1| - 8.3e-06 25.4 0.1 1.6e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HAD_2 PF13419.6 gi|352682642|ref|YP_004893166.1| - 2e-29 102.9 0.0 2.6e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|352682642|ref|YP_004893166.1| - 6.8e-15 55.9 0.0 2.4e-13 50.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|352682642|ref|YP_004893166.1| - 9.6e-09 35.9 0.0 3.2e-08 34.2 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|352682642|ref|YP_004893166.1| - 1.5e-05 25.0 0.0 3e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|352682642|ref|YP_004893166.1| - 0.0067 16.2 0.0 2.3 7.9 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|352682642|ref|YP_004893166.1| - 0.12 11.9 0.0 1.5 8.3 0.0 2.0 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase DUF973 PF06157.11 gi|352682643|ref|YP_004893167.1| - 0.012 14.7 30.3 0.012 14.6 9.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|352682643|ref|YP_004893167.1| - 0.26 11.6 36.3 1 9.7 14.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF996) SUR7 PF06687.12 gi|352682643|ref|YP_004893167.1| - 1.2 8.7 30.5 1.2 8.7 9.6 2.3 1 1 1 2 2 2 0 SUR7/PalI family DUF898 PF05987.13 gi|352682643|ref|YP_004893167.1| - 2.1 7.3 22.4 1.1 8.2 5.6 2.2 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF898) DNA_pol_B PF00136.21 gi|352682644|ref|YP_004893168.1| - 0.0014 17.4 0.0 0.045 12.4 0.0 2.1 2 0 0 2 2 2 2 DNA polymerase family B GTP_cyclohydroI PF01227.22 gi|352682647|ref|YP_004893171.1| - 3.4e-47 160.2 0.0 4e-47 159.9 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I CbiZ PF01955.18 gi|352682649|ref|YP_004893173.1| - 9.3e-38 130.2 0.2 1.1e-37 130.1 0.2 1.0 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Glycos_transf_2 PF00535.26 gi|352682650|ref|YP_004893174.1| - 3.6e-24 85.5 0.1 4.5e-24 85.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|352682650|ref|YP_004893174.1| - 5.3e-19 69.0 0.4 9.9e-19 68.1 0.4 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|352682650|ref|YP_004893174.1| - 7.5e-05 22.3 0.0 0.00013 21.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 NTP_transf_3 PF12804.7 gi|352682650|ref|YP_004893174.1| - 0.00068 20.0 0.1 0.00076 19.9 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.6 gi|352682650|ref|YP_004893174.1| - 0.00069 20.1 0.1 0.0012 19.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|352682650|ref|YP_004893174.1| - 0.0012 18.7 0.0 0.0019 18.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Isochorismatase PF00857.20 gi|352682651|ref|YP_004893175.1| - 1.6e-41 142.4 0.0 1.9e-41 142.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Mobilization_B PF17511.2 gi|352682652|ref|YP_004893176.1| - 0.0036 17.7 0.5 0.01 16.2 0.3 1.8 1 1 1 2 2 2 1 Mobilization protein B Snapin_Pallidin PF14712.6 gi|352682652|ref|YP_004893176.1| - 0.012 16.0 2.4 0.16 12.4 0.4 2.3 1 1 1 2 2 2 0 Snapin/Pallidin Sec20 PF03908.13 gi|352682652|ref|YP_004893176.1| - 0.024 14.5 0.5 0.047 13.6 0.2 1.6 2 0 0 2 2 2 0 Sec20 DUF16 PF01519.16 gi|352682652|ref|YP_004893176.1| - 0.028 14.9 0.5 0.1 13.1 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF16 Baculo_PEP_C PF04513.12 gi|352682652|ref|YP_004893176.1| - 0.041 13.9 2.4 1.5 8.9 1.0 2.2 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus FlgN PF05130.12 gi|352682652|ref|YP_004893176.1| - 0.052 14.1 11.3 0.57 10.7 4.0 2.4 1 1 1 2 2 2 0 FlgN protein DUF1664 PF07889.12 gi|352682652|ref|YP_004893176.1| - 0.055 13.5 0.6 0.22 11.5 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) WXG100 PF06013.12 gi|352682652|ref|YP_004893176.1| - 0.074 13.3 0.7 8.8 6.6 0.1 2.9 2 1 0 2 2 2 0 Proteins of 100 residues with WXG SKA2 PF16740.5 gi|352682652|ref|YP_004893176.1| - 0.077 12.8 1.6 5 6.9 0.2 2.2 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 DivIVA PF05103.13 gi|352682652|ref|YP_004893176.1| - 0.086 12.9 1.3 1.7 8.7 0.1 2.1 2 0 0 2 2 2 0 DivIVA protein XPC-binding PF09280.11 gi|352682652|ref|YP_004893176.1| - 0.11 12.3 0.4 24 4.8 0.0 3.0 4 0 0 4 4 4 0 XPC-binding domain Flg_hook PF02120.16 gi|352682652|ref|YP_004893176.1| - 0.15 11.9 2.2 1.3 8.9 0.2 2.4 2 1 0 2 2 2 0 Flagellar hook-length control protein FliK BLOC1_2 PF10046.9 gi|352682652|ref|YP_004893176.1| - 0.16 12.3 1.7 4 7.8 0.3 2.5 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PUL PF08324.11 gi|352682652|ref|YP_004893176.1| - 0.41 9.8 3.9 1.6 7.9 3.9 1.8 1 1 0 1 1 1 0 PUL domain Auto_anti-p27 PF06677.12 gi|352682653|ref|YP_004893177.1| - 7.5e-12 45.2 0.4 1.1e-11 44.6 0.4 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.11 gi|352682653|ref|YP_004893177.1| - 6.4e-06 26.0 0.4 1.2e-05 25.1 0.4 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|352682653|ref|YP_004893177.1| - 0.00013 21.4 3.1 0.00021 20.7 3.1 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_ribbon_SprT PF17283.2 gi|352682653|ref|YP_004893177.1| - 0.00045 20.1 2.1 0.00065 19.6 2.1 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|352682653|ref|YP_004893177.1| - 0.0015 18.3 2.6 0.0034 17.2 2.6 1.6 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-RRN7 PF11781.8 gi|352682653|ref|YP_004893177.1| - 0.0039 16.8 1.8 0.0062 16.2 1.8 1.2 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|352682653|ref|YP_004893177.1| - 0.0046 17.1 0.7 4.3 7.5 0.0 2.5 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352682653|ref|YP_004893177.1| - 0.0046 16.9 2.3 0.0066 16.4 0.3 2.0 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|352682653|ref|YP_004893177.1| - 0.0077 16.2 0.3 0.012 15.7 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|352682653|ref|YP_004893177.1| - 0.0095 15.9 3.0 0.0095 15.9 3.0 2.4 2 1 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain CpXC PF14353.6 gi|352682653|ref|YP_004893177.1| - 0.019 15.0 0.1 0.024 14.7 0.1 1.3 1 0 0 1 1 1 0 CpXC protein zinc-ribbons_6 PF07191.12 gi|352682653|ref|YP_004893177.1| - 0.028 14.4 0.4 0.043 13.8 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_10 PF10058.9 gi|352682653|ref|YP_004893177.1| - 0.036 13.8 0.4 7.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein GFA PF04828.14 gi|352682653|ref|YP_004893177.1| - 0.045 14.1 0.3 5.1 7.5 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Sgf11 PF08209.11 gi|352682653|ref|YP_004893177.1| - 0.055 13.0 2.1 0.45 10.1 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_9 PF14369.6 gi|352682653|ref|YP_004893177.1| - 0.056 13.7 0.4 3.4 8.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon DUF4715 PF15835.5 gi|352682653|ref|YP_004893177.1| - 0.07 13.2 0.2 0.087 12.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4715) zf-ribbon_3 PF13248.6 gi|352682653|ref|YP_004893177.1| - 0.12 11.8 1.9 0.29 10.6 1.9 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|352682653|ref|YP_004893177.1| - 0.16 11.3 0.8 0.33 10.3 0.8 1.6 1 0 0 1 1 1 0 Transcription factor zinc-finger Lar_restr_allev PF14354.6 gi|352682653|ref|YP_004893177.1| - 0.42 11.0 2.1 1 9.8 2.1 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar RIO1 PF01163.22 gi|352682654|ref|YP_004893178.1| - 6.5e-05 22.6 0.0 9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|352682654|ref|YP_004893178.1| - 0.0003 20.8 0.5 0.026 14.4 0.4 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family PUA PF01472.20 gi|352682655|ref|YP_004893179.1| - 6.5e-19 67.7 1.6 3.1e-18 65.5 0.2 2.1 2 0 0 2 2 2 1 PUA domain DUF1947 PF09183.10 gi|352682655|ref|YP_004893179.1| - 7.2e-08 32.6 0.4 2.4e-07 30.9 0.1 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|352682655|ref|YP_004893179.1| - 1.3e-06 28.5 0.1 2.1e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|352682655|ref|YP_004893179.1| - 0.0092 15.8 0.8 0.035 13.9 0.0 2.2 2 1 0 2 2 2 1 PUA-like domain Pre-PUA PF17832.1 gi|352682655|ref|YP_004893179.1| - 0.074 13.7 0.0 0.13 13.0 0.0 1.4 1 0 0 1 1 1 0 Pre-PUA-like domain HTH_31 PF13560.6 gi|352682656|ref|YP_004893180.1| - 2.5e-09 37.3 7.2 7.3e-09 35.9 6.1 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|352682656|ref|YP_004893180.1| - 1.9e-08 34.2 0.2 7.6e-08 32.3 0.3 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|352682656|ref|YP_004893180.1| - 1.1e-06 28.6 0.4 2.9e-06 27.2 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|352682656|ref|YP_004893180.1| - 0.00043 20.0 0.2 0.0022 17.8 0.1 2.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_25 PF13413.6 gi|352682656|ref|YP_004893180.1| - 0.00044 20.1 2.0 0.00092 19.0 2.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|352682656|ref|YP_004893180.1| - 0.00055 20.1 2.0 0.38 11.0 0.1 4.1 3 1 1 4 4 4 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|352682656|ref|YP_004893180.1| - 0.00066 19.6 0.6 0.1 12.5 0.1 3.7 5 0 0 5 5 5 1 HTH domain MerR PF00376.23 gi|352682656|ref|YP_004893180.1| - 0.0079 15.9 0.1 0.039 13.7 0.1 2.2 2 0 0 2 2 2 1 MerR family regulatory protein HTH_22 PF13309.6 gi|352682656|ref|YP_004893180.1| - 0.0088 16.1 0.4 0.034 14.2 0.1 2.0 2 0 0 2 2 2 1 HTH domain Sigma70_r4 PF04545.16 gi|352682656|ref|YP_004893180.1| - 0.018 14.5 1.0 0.12 11.9 0.6 2.4 1 1 1 2 2 2 0 Sigma-70, region 4 HTH_7 PF02796.15 gi|352682656|ref|YP_004893180.1| - 0.019 15.0 0.0 0.051 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase MerR_1 PF13411.6 gi|352682656|ref|YP_004893180.1| - 0.024 14.7 0.1 0.069 13.3 0.0 1.9 2 0 0 2 2 2 0 MerR HTH family regulatory protein TnsD PF15978.5 gi|352682656|ref|YP_004893180.1| - 0.04 12.9 0.0 0.055 12.4 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D TRM PF02005.16 gi|352682657|ref|YP_004893181.1| - 1.3e-78 264.9 0.0 3.2e-78 263.5 0.0 1.6 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.15 gi|352682657|ref|YP_004893181.1| - 0.0063 16.2 0.0 0.0098 15.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|352682657|ref|YP_004893181.1| - 0.025 14.1 0.0 0.043 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Met_10 PF02475.16 gi|352682657|ref|YP_004893181.1| - 0.046 13.5 0.0 0.065 13.0 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein AAA_18 PF13238.6 gi|352682658|ref|YP_004893182.1| - 5.8e-12 46.3 0.0 8.5e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|352682658|ref|YP_004893182.1| - 1.5e-10 41.6 0.1 2.5e-10 40.9 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|352682658|ref|YP_004893182.1| - 3.4e-06 27.3 0.0 5.7e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|352682658|ref|YP_004893182.1| - 0.0061 16.3 0.4 0.96 9.1 0.1 2.7 1 1 1 2 2 2 2 Thymidylate kinase ADK PF00406.22 gi|352682658|ref|YP_004893182.1| - 0.013 15.6 0.1 0.047 13.8 0.1 1.8 1 1 0 1 1 1 0 Adenylate kinase ATPase PF06745.13 gi|352682658|ref|YP_004893182.1| - 0.024 14.0 1.2 0.19 11.0 0.2 2.3 2 1 1 3 3 3 0 KaiC TetR_N PF00440.23 gi|352682658|ref|YP_004893182.1| - 0.091 12.6 0.1 2 8.2 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family SKI PF01202.22 gi|352682658|ref|YP_004893182.1| - 0.12 12.4 0.2 0.21 11.7 0.0 1.5 2 0 0 2 2 2 0 Shikimate kinase RNA_binding PF01877.17 gi|352682659|ref|YP_004893183.1| - 1.6e-16 60.6 0.0 2.5e-16 60.0 0.0 1.3 1 1 0 1 1 1 1 RNA binding UPF0020 PF01170.18 gi|352682660|ref|YP_004893184.1| - 3e-10 40.1 0.0 9.4e-09 35.2 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|352682660|ref|YP_004893184.1| - 0.00054 20.6 0.0 0.00089 19.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|352682660|ref|YP_004893184.1| - 0.0012 19.5 0.0 0.0026 18.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|352682660|ref|YP_004893184.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Methyltransf_31 PF13847.6 gi|352682660|ref|YP_004893184.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|352682660|ref|YP_004893184.1| - 0.015 15.0 0.1 0.033 13.9 0.0 1.6 2 0 0 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase DUF373 PF04123.13 gi|352682661|ref|YP_004893185.1| - 3e-75 253.7 17.6 3.7e-75 253.4 17.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) MscS_porin PF12795.7 gi|352682662|ref|YP_004893186.1| - 2.8e-07 30.3 38.0 4.4e-06 26.4 11.4 2.5 2 1 0 2 2 2 2 Mechanosensitive ion channel porin domain Baculo_PEP_C PF04513.12 gi|352682662|ref|YP_004893186.1| - 3.5e-07 30.3 10.8 0.00019 21.5 0.6 3.3 2 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Snapin_Pallidin PF14712.6 gi|352682662|ref|YP_004893186.1| - 6.7e-07 29.6 31.3 0.033 14.6 5.0 4.6 2 2 2 4 4 4 2 Snapin/Pallidin CENP-F_leu_zip PF10473.9 gi|352682662|ref|YP_004893186.1| - 4.9e-06 26.6 39.5 0.002 18.1 9.8 3.6 2 1 1 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EzrA PF06160.12 gi|352682662|ref|YP_004893186.1| - 6.5e-06 24.6 38.5 1.6e-05 23.4 11.5 2.6 2 1 0 2 2 2 2 Septation ring formation regulator, EzrA HBM PF16591.5 gi|352682662|ref|YP_004893186.1| - 7.2e-06 25.6 28.3 0.0044 16.5 4.7 4.2 1 1 2 4 4 4 2 Helical bimodular sensor domain FliJ PF02050.16 gi|352682662|ref|YP_004893186.1| - 7.9e-06 26.1 34.2 0.0021 18.2 6.6 4.3 2 2 2 4 4 4 2 Flagellar FliJ protein TPR_MLP1_2 PF07926.12 gi|352682662|ref|YP_004893186.1| - 1.8e-05 24.8 43.8 0.0029 17.7 3.9 5.0 2 2 2 5 5 5 2 TPR/MLP1/MLP2-like protein Spc7 PF08317.11 gi|352682662|ref|YP_004893186.1| - 1.9e-05 23.7 43.9 0.002 17.1 11.8 3.3 1 1 1 3 3 3 2 Spc7 kinetochore protein TMF_TATA_bd PF12325.8 gi|352682662|ref|YP_004893186.1| - 5.1e-05 23.5 38.3 0.13 12.5 11.4 4.7 2 2 1 3 3 3 2 TATA element modulatory factor 1 TATA binding Macoilin PF09726.9 gi|352682662|ref|YP_004893186.1| - 6e-05 21.8 34.0 0.00013 20.7 15.3 2.1 2 0 0 2 2 2 1 Macoilin family DUF4201 PF13870.6 gi|352682662|ref|YP_004893186.1| - 7.2e-05 22.6 45.2 0.0032 17.2 13.1 3.6 2 2 0 2 2 2 2 Domain of unknown function (DUF4201) DUF1664 PF07889.12 gi|352682662|ref|YP_004893186.1| - 8.7e-05 22.6 25.6 0.029 14.4 3.8 4.1 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|352682662|ref|YP_004893186.1| - 9.7e-05 21.2 34.0 0.034 12.8 33.7 2.1 1 1 0 1 1 1 1 AAA domain FlaC_arch PF05377.11 gi|352682662|ref|YP_004893186.1| - 0.00017 21.9 28.7 0.0097 16.3 2.3 6.3 2 2 4 6 6 6 1 Flagella accessory protein C (FlaC) ADIP PF11559.8 gi|352682662|ref|YP_004893186.1| - 0.00018 21.6 44.9 0.0026 17.8 6.9 4.1 2 2 2 4 4 4 1 Afadin- and alpha -actinin-Binding KASH_CCD PF14662.6 gi|352682662|ref|YP_004893186.1| - 0.00022 21.1 39.8 0.032 14.1 10.6 2.9 2 1 0 2 2 2 2 Coiled-coil region of CCDC155 or KASH Atg14 PF10186.9 gi|352682662|ref|YP_004893186.1| - 0.0003 20.0 51.2 0.18 10.9 16.4 3.9 1 1 2 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 Laminin_II PF06009.12 gi|352682662|ref|YP_004893186.1| - 0.00038 20.5 35.9 0.0041 17.1 9.5 3.6 2 2 2 4 4 4 2 Laminin Domain II IFT57 PF10498.9 gi|352682662|ref|YP_004893186.1| - 0.00042 19.4 32.0 0.011 14.7 4.7 3.1 1 1 2 3 3 3 2 Intra-flagellar transport protein 57 HSBP1 PF06825.12 gi|352682662|ref|YP_004893186.1| - 0.00046 20.0 8.6 0.0033 17.2 1.1 3.7 3 0 0 3 3 2 1 Heat shock factor binding protein 1 Seryl_tRNA_N PF02403.22 gi|352682662|ref|YP_004893186.1| - 0.00051 20.2 45.4 0.061 13.6 6.3 4.6 2 2 2 4 4 4 1 Seryl-tRNA synthetase N-terminal domain DUF2353 PF09789.9 gi|352682662|ref|YP_004893186.1| - 0.00052 19.5 15.6 0.00052 19.5 15.6 2.9 1 1 2 3 3 3 1 Uncharacterized coiled-coil protein (DUF2353) ATG16 PF08614.11 gi|352682662|ref|YP_004893186.1| - 0.00058 20.1 41.0 0.09 13.0 12.6 4.1 2 2 0 2 2 2 1 Autophagy protein 16 (ATG16) CALCOCO1 PF07888.11 gi|352682662|ref|YP_004893186.1| - 0.0008 18.4 35.8 0.007 15.3 10.5 2.4 2 1 0 2 2 2 2 Calcium binding and coiled-coil domain (CALCOCO1) like HAP1_N PF04849.13 gi|352682662|ref|YP_004893186.1| - 0.0008 18.7 32.9 0.013 14.7 7.0 2.6 2 1 0 2 2 2 2 HAP1 N-terminal conserved region Mod_r PF07200.13 gi|352682662|ref|YP_004893186.1| - 0.00098 19.2 37.6 0.57 10.3 9.5 3.9 2 2 1 3 3 3 2 Modifier of rudimentary (Mod(r)) protein PspA_IM30 PF04012.12 gi|352682662|ref|YP_004893186.1| - 0.0011 18.6 36.0 0.0025 17.4 2.9 4.4 2 2 1 3 3 3 2 PspA/IM30 family DUF16 PF01519.16 gi|352682662|ref|YP_004893186.1| - 0.0011 19.4 28.1 0.029 14.8 1.1 4.2 2 2 2 4 4 4 1 Protein of unknown function DUF16 Prominin PF05478.11 gi|352682662|ref|YP_004893186.1| - 0.0012 16.9 22.9 0.0015 16.6 2.9 2.9 2 1 1 3 3 3 2 Prominin SKA2 PF16740.5 gi|352682662|ref|YP_004893186.1| - 0.0012 18.6 32.3 0.092 12.5 4.9 5.0 2 2 2 4 4 4 2 Spindle and kinetochore-associated protein 2 LPP PF04728.13 gi|352682662|ref|YP_004893186.1| - 0.0017 18.7 20.8 0.28 11.6 0.5 6.4 3 2 2 5 5 4 1 Lipoprotein leucine-zipper Sec34 PF04136.15 gi|352682662|ref|YP_004893186.1| - 0.002 18.0 24.4 0.17 11.8 2.2 4.2 2 2 2 4 4 4 2 Sec34-like family YabA PF06156.13 gi|352682662|ref|YP_004893186.1| - 0.0021 18.6 32.1 0.47 11.1 5.6 4.6 2 2 4 6 6 6 1 Initiation control protein YabA HrpB7 PF09486.10 gi|352682662|ref|YP_004893186.1| - 0.0023 18.4 34.3 0.024 15.0 4.5 4.8 2 2 1 4 4 4 1 Bacterial type III secretion protein (HrpB7) DUF4200 PF13863.6 gi|352682662|ref|YP_004893186.1| - 0.0024 18.3 49.5 0.26 11.7 9.7 4.2 2 2 1 3 3 3 2 Domain of unknown function (DUF4200) THOC7 PF05615.13 gi|352682662|ref|YP_004893186.1| - 0.0026 18.0 6.4 0.0026 18.0 6.4 5.0 2 2 2 4 4 3 1 Tho complex subunit 7 DUF4530 PF15039.6 gi|352682662|ref|YP_004893186.1| - 0.0032 17.6 8.3 0.21 11.7 0.2 3.0 2 2 1 3 3 2 1 Domain of unknown function (DUF4530) Prefoldin PF02996.17 gi|352682662|ref|YP_004893186.1| - 0.0032 17.4 35.8 0.015 15.2 6.1 6.4 2 2 1 5 5 5 1 Prefoldin subunit GAS PF13851.6 gi|352682662|ref|YP_004893186.1| - 0.0035 16.7 43.4 0.029 13.7 18.2 3.6 1 1 3 4 4 4 3 Growth-arrest specific micro-tubule binding DUF3450 PF11932.8 gi|352682662|ref|YP_004893186.1| - 0.0036 16.7 34.5 0.57 9.4 2.8 4.1 2 2 2 4 4 4 3 Protein of unknown function (DUF3450) BRE1 PF08647.11 gi|352682662|ref|YP_004893186.1| - 0.0036 17.3 43.6 0.031 14.3 6.7 4.5 1 1 2 4 4 4 2 BRE1 E3 ubiquitin ligase NPV_P10 PF05531.12 gi|352682662|ref|YP_004893186.1| - 0.004 17.6 19.2 0.14 12.6 2.6 5.1 2 2 2 4 4 3 1 Nucleopolyhedrovirus P10 protein APG6_N PF17675.1 gi|352682662|ref|YP_004893186.1| - 0.0043 17.6 47.1 0.24 11.9 16.6 4.4 2 2 1 3 3 3 2 Apg6 coiled-coil region USP8_interact PF08941.10 gi|352682662|ref|YP_004893186.1| - 0.0049 16.7 20.0 1.7 8.4 5.3 3.7 2 2 2 4 4 4 0 USP8 interacting BST2 PF16716.5 gi|352682662|ref|YP_004893186.1| - 0.0049 17.4 30.3 0.1 13.2 3.2 5.0 3 2 2 5 5 4 2 Bone marrow stromal antigen 2 DUF773 PF05600.12 gi|352682662|ref|YP_004893186.1| - 0.005 15.6 26.8 0.02 13.6 4.8 3.3 2 1 1 3 3 3 2 CDK5 regulatory subunit-associated protein 3 Fez1 PF06818.15 gi|352682662|ref|YP_004893186.1| - 0.0054 17.2 34.8 8.1e+03 -3.0 34.8 2.7 1 1 0 1 1 0 0 Fez1 Nup54 PF13874.6 gi|352682662|ref|YP_004893186.1| - 0.0056 16.8 10.6 0.0056 16.8 10.6 3.6 2 2 1 3 3 3 1 Nucleoporin complex subunit 54 COG5 PF10392.9 gi|352682662|ref|YP_004893186.1| - 0.0056 16.9 27.9 0.2 11.8 0.7 4.4 2 2 2 4 4 4 2 Golgi transport complex subunit 5 Syntaxin-6_N PF09177.11 gi|352682662|ref|YP_004893186.1| - 0.006 17.1 27.4 0.48 11.0 2.6 4.4 1 1 2 3 3 3 1 Syntaxin 6, N-terminal PI3K_P85_iSH2 PF16454.5 gi|352682662|ref|YP_004893186.1| - 0.006 16.2 38.8 0.021 14.4 6.9 4.1 2 2 2 4 4 4 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF2968 PF11180.8 gi|352682662|ref|YP_004893186.1| - 0.0062 16.2 7.8 0.0062 16.2 7.8 3.3 3 1 1 4 4 3 1 Protein of unknown function (DUF2968) DUF3584 PF12128.8 gi|352682662|ref|YP_004893186.1| - 0.0064 14.1 36.0 0.051 11.1 18.0 2.0 1 1 0 2 2 2 2 Protein of unknown function (DUF3584) Cnn_1N PF07989.11 gi|352682662|ref|YP_004893186.1| - 0.0066 16.6 38.3 0.023 14.9 10.4 5.1 3 1 2 5 5 5 1 Centrosomin N-terminal motif 1 Laminin_I PF06008.14 gi|352682662|ref|YP_004893186.1| - 0.0072 16.1 35.2 0.017 14.9 9.6 2.6 2 1 0 2 2 2 1 Laminin Domain I COG2 PF06148.11 gi|352682662|ref|YP_004893186.1| - 0.0091 16.1 26.9 0.37 10.9 2.9 4.7 2 2 2 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 Golgin_A5 PF09787.9 gi|352682662|ref|YP_004893186.1| - 0.011 15.3 36.5 0.095 12.2 11.6 2.6 1 1 1 2 2 2 0 Golgin subfamily A member 5 DUF4407 PF14362.6 gi|352682662|ref|YP_004893186.1| - 0.011 15.1 6.9 0.011 15.1 6.9 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) DUF948 PF06103.11 gi|352682662|ref|YP_004893186.1| - 0.013 15.8 9.8 0.62 10.4 0.2 4.2 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) CENP-H PF05837.12 gi|352682662|ref|YP_004893186.1| - 0.014 15.8 40.4 0.83 10.1 13.5 4.3 2 2 2 4 4 3 0 Centromere protein H (CENP-H) FUSC PF04632.12 gi|352682662|ref|YP_004893186.1| - 0.015 13.8 8.8 0.44 9.0 0.4 2.1 2 0 0 2 2 2 0 Fusaric acid resistance protein family DUF812 PF05667.11 gi|352682662|ref|YP_004893186.1| - 0.017 14.0 40.9 0.19 10.6 12.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF3776 PF12618.8 gi|352682662|ref|YP_004893186.1| - 0.017 15.7 3.3 0.017 15.7 3.3 2.5 3 1 0 3 3 1 0 Protein of unknown function (DUF3776) UPF0449 PF15136.6 gi|352682662|ref|YP_004893186.1| - 0.017 15.6 3.9 0.017 15.6 3.9 5.4 3 2 2 5 5 4 0 Uncharacterised protein family UPF0449 HMMR_N PF15905.5 gi|352682662|ref|YP_004893186.1| - 0.022 14.3 42.5 0.11 12.0 11.5 2.5 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal DUF724 PF05266.14 gi|352682662|ref|YP_004893186.1| - 0.023 14.5 42.5 0.15 11.8 16.0 3.7 2 2 3 5 5 5 0 Protein of unknown function (DUF724) ZapB PF06005.12 gi|352682662|ref|YP_004893186.1| - 0.023 15.1 45.5 0.055 13.9 5.0 5.0 2 2 2 4 4 4 0 Cell division protein ZapB Med9 PF07544.13 gi|352682662|ref|YP_004893186.1| - 0.027 14.6 38.5 0.71 10.0 6.3 5.2 2 2 3 5 5 5 0 RNA polymerase II transcription mediator complex subunit 9 OmpH PF03938.14 gi|352682662|ref|YP_004893186.1| - 0.03 14.7 38.6 0.054 13.8 10.5 3.8 1 1 1 2 2 1 0 Outer membrane protein (OmpH-like) DUF2730 PF10805.8 gi|352682662|ref|YP_004893186.1| - 0.031 14.3 21.8 0.31 11.2 1.5 4.5 1 1 1 4 4 4 0 Protein of unknown function (DUF2730) APG17 PF04108.12 gi|352682662|ref|YP_004893186.1| - 0.032 13.4 27.4 16 4.5 27.4 2.9 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF5082 PF16888.5 gi|352682662|ref|YP_004893186.1| - 0.035 14.4 41.1 0.22 11.8 2.6 4.8 1 1 1 3 3 3 0 Domain of unknown function (DUF5082) TMPIT PF07851.13 gi|352682662|ref|YP_004893186.1| - 0.035 13.4 29.9 0.11 11.7 7.0 3.4 2 2 1 3 3 3 0 TMPIT-like protein Tup_N PF08581.10 gi|352682662|ref|YP_004893186.1| - 0.037 14.3 3.0 0.037 14.3 3.0 4.6 2 2 2 4 4 4 0 Tup N-terminal DHR10 PF18595.1 gi|352682662|ref|YP_004893186.1| - 0.037 14.1 46.7 0.39 10.8 7.4 4.6 2 2 2 4 4 3 0 Designed helical repeat protein 10 domain Spc24 PF08286.11 gi|352682662|ref|YP_004893186.1| - 0.048 13.9 37.1 0.93 9.8 6.6 5.1 1 1 2 3 3 2 0 Spc24 subunit of Ndc80 DUF4763 PF15960.5 gi|352682662|ref|YP_004893186.1| - 0.051 12.9 29.7 0.3 10.3 2.0 3.7 2 2 1 3 3 3 0 Domain of unknown function (DUF4763) MAP65_ASE1 PF03999.12 gi|352682662|ref|YP_004893186.1| - 0.059 12.1 35.9 0.16 10.7 35.9 1.7 1 1 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) DUF4472 PF14739.6 gi|352682662|ref|YP_004893186.1| - 0.06 14.1 29.8 2.8 8.7 3.1 4.4 2 2 1 3 3 3 0 Domain of unknown function (DUF4472) DASH_Dam1 PF08653.10 gi|352682662|ref|YP_004893186.1| - 0.064 13.1 7.1 7.7 6.4 0.1 5.3 4 2 2 6 6 5 0 DASH complex subunit Dam1 Filament PF00038.21 gi|352682662|ref|YP_004893186.1| - 0.065 12.8 41.6 0.031 13.9 11.4 3.3 1 1 1 3 3 3 0 Intermediate filament protein FPP PF05911.11 gi|352682662|ref|YP_004893186.1| - 0.082 11.1 35.6 0.034 12.4 9.6 2.1 1 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil GldM_N PF12081.8 gi|352682662|ref|YP_004893186.1| - 0.089 12.9 23.8 0.19 11.8 10.8 3.1 2 1 0 2 2 2 0 GldM N-terminal domain Prefoldin_2 PF01920.20 gi|352682662|ref|YP_004893186.1| - 0.09 12.7 41.5 1.2 9.2 11.0 5.7 1 1 5 6 6 5 0 Prefoldin subunit CREPT PF16566.5 gi|352682662|ref|YP_004893186.1| - 0.091 12.9 32.6 0.089 13.0 2.1 4.9 2 2 2 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour WXG100 PF06013.12 gi|352682662|ref|YP_004893186.1| - 0.1 12.8 16.2 2.8 8.2 0.1 5.5 4 2 1 5 5 4 0 Proteins of 100 residues with WXG DUF3653 PF12375.8 gi|352682662|ref|YP_004893186.1| - 0.11 12.7 1.7 0.8 9.9 0.1 3.1 3 1 0 3 3 2 0 Phage protein TACC_C PF05010.14 gi|352682662|ref|YP_004893186.1| - 0.11 12.3 33.6 0.31 10.8 7.4 3.0 1 1 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Med3 PF11593.8 gi|352682662|ref|YP_004893186.1| - 0.12 11.6 17.3 0.025 13.8 3.3 2.2 2 0 0 2 2 2 0 Mediator complex subunit 3 fungal DUF2203 PF09969.9 gi|352682662|ref|YP_004893186.1| - 0.14 12.9 27.2 4.1 8.1 6.7 4.4 2 2 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) HycH PF07450.11 gi|352682662|ref|YP_004893186.1| - 0.14 12.5 5.2 0.48 10.8 0.0 3.2 2 2 2 4 4 3 0 Formate hydrogenlyase maturation protein HycH HAUS-augmin3 PF14932.6 gi|352682662|ref|YP_004893186.1| - 0.19 11.3 28.6 0.73 9.4 3.9 2.9 2 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 Mating_N PF12731.7 gi|352682662|ref|YP_004893186.1| - 0.2 11.8 5.4 3.5 7.8 0.2 3.6 3 1 1 4 4 2 0 Mating-type protein beta 1 Hrs_helical PF12210.8 gi|352682662|ref|YP_004893186.1| - 0.2 12.2 29.1 1.2 9.7 3.3 4.7 2 2 3 5 5 4 0 Hepatocyte growth factor-regulated tyrosine kinase substrate DUF4618 PF15397.6 gi|352682662|ref|YP_004893186.1| - 0.2 11.0 33.8 0.055 12.9 12.2 4.0 2 1 1 3 3 2 0 Domain of unknown function (DUF4618) Tht1 PF04163.12 gi|352682662|ref|YP_004893186.1| - 0.22 10.2 14.0 0.056 12.2 2.3 2.1 2 0 0 2 2 2 0 Tht1-like nuclear fusion protein HOOK PF05622.12 gi|352682662|ref|YP_004893186.1| - 0.23 9.6 36.1 0.73 7.9 8.9 2.4 2 0 0 2 2 2 0 HOOK protein BEN PF10523.9 gi|352682662|ref|YP_004893186.1| - 0.23 11.7 2.9 0.28 11.4 0.0 2.6 3 1 0 3 3 1 0 BEN domain FapA PF03961.13 gi|352682662|ref|YP_004893186.1| - 0.23 10.0 41.5 0.35 9.4 11.6 3.5 1 1 1 3 3 3 0 Flagellar Assembly Protein A Exonuc_VII_L PF02601.15 gi|352682662|ref|YP_004893186.1| - 0.3 10.6 32.5 1.8e+04 -7.1 32.5 2.2 1 1 0 1 1 0 0 Exonuclease VII, large subunit Talin_middle PF09141.10 gi|352682662|ref|YP_004893186.1| - 0.31 11.1 12.6 0.54 10.3 5.2 3.2 2 1 0 2 2 2 0 Talin, middle domain V_ATPase_I PF01496.19 gi|352682662|ref|YP_004893186.1| - 0.31 8.9 25.7 0.39 8.6 10.2 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family MAD PF05557.13 gi|352682662|ref|YP_004893186.1| - 0.34 9.2 41.2 0.66 8.3 11.5 2.3 1 1 0 2 2 2 0 Mitotic checkpoint protein LXG PF04740.12 gi|352682662|ref|YP_004893186.1| - 0.38 10.4 24.7 0.27 10.9 6.7 3.5 1 1 2 3 3 3 0 LXG domain of WXG superfamily FCH PF00611.23 gi|352682662|ref|YP_004893186.1| - 0.39 11.0 8.0 0.14 12.5 2.4 2.9 2 2 0 2 2 1 0 Fes/CIP4, and EFC/F-BAR homology domain Acyl-CoA_dh_C PF12806.7 gi|352682662|ref|YP_004893186.1| - 0.45 10.7 6.8 22 5.2 0.4 4.1 2 2 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like Tweety PF04906.13 gi|352682662|ref|YP_004893186.1| - 0.47 9.1 11.2 0.18 10.5 2.5 2.3 2 0 0 2 2 2 0 Tweety AATF-Che1 PF13339.6 gi|352682662|ref|YP_004893186.1| - 0.5 11.0 26.1 1.4 9.6 4.8 3.4 2 1 1 3 3 3 0 Apoptosis antagonizing transcription factor FH2 PF02181.23 gi|352682662|ref|YP_004893186.1| - 0.55 9.3 22.1 0.074 12.2 1.2 3.6 1 1 3 4 4 4 0 Formin Homology 2 Domain CorA PF01544.18 gi|352682662|ref|YP_004893186.1| - 0.59 9.4 32.5 0.075 12.3 9.6 3.1 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Taxilin PF09728.9 gi|352682662|ref|YP_004893186.1| - 0.62 9.2 37.8 27 3.8 36.0 3.5 1 1 0 1 1 1 0 Myosin-like coiled-coil protein Rootletin PF15035.6 gi|352682662|ref|YP_004893186.1| - 0.64 10.0 31.7 0.74 9.8 7.5 3.1 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion Glypican PF01153.19 gi|352682662|ref|YP_004893186.1| - 0.67 8.7 7.9 0.048 12.5 2.6 1.6 2 0 0 2 2 2 0 Glypican Fib_alpha PF08702.10 gi|352682662|ref|YP_004893186.1| - 0.69 10.1 33.9 1.7 8.9 5.1 3.7 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family TelA PF05816.11 gi|352682662|ref|YP_004893186.1| - 0.74 8.8 31.9 4.1 6.4 8.3 3.6 2 2 0 2 2 2 0 Toxic anion resistance protein (TelA) DUF2433 PF10360.9 gi|352682662|ref|YP_004893186.1| - 0.75 9.9 8.1 11 6.1 0.5 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2433) CENP-Q PF13094.6 gi|352682662|ref|YP_004893186.1| - 0.75 10.0 35.9 0.71 10.1 15.4 3.7 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Tektin PF03148.14 gi|352682662|ref|YP_004893186.1| - 0.76 8.5 36.6 4.4 6.0 11.7 4.0 2 2 0 2 2 2 0 Tektin family Vps52 PF04129.12 gi|352682662|ref|YP_004893186.1| - 0.76 8.4 19.7 0.024 13.4 5.3 2.4 2 1 0 2 2 2 0 Vps52 / Sac2 family BLOC1_2 PF10046.9 gi|352682662|ref|YP_004893186.1| - 0.85 10.0 31.0 5.9 7.3 3.5 5.3 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ArAE_2 PF10334.9 gi|352682662|ref|YP_004893186.1| - 0.89 9.3 8.3 6.8 6.4 1.1 3.4 2 2 1 3 3 3 0 Aromatic acid exporter family member 2 HAUS5 PF14817.6 gi|352682662|ref|YP_004893186.1| - 0.91 8.2 29.7 0.1 11.4 6.0 2.6 2 1 0 2 2 2 0 HAUS augmin-like complex subunit 5 HemX PF04375.14 gi|352682662|ref|YP_004893186.1| - 0.98 8.6 26.6 5.7 6.1 7.0 4.1 2 2 0 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Phage_HK97_TLTM PF06120.11 gi|352682662|ref|YP_004893186.1| - 1 8.5 32.7 0.92 8.6 4.0 4.1 1 1 2 4 4 4 0 Tail length tape measure protein Rab5-bind PF09311.11 gi|352682662|ref|YP_004893186.1| - 1.1 8.6 35.2 0.93 8.8 7.1 3.2 1 1 0 2 2 2 0 Rabaptin-like protein TolA_bind_tri PF16331.5 gi|352682662|ref|YP_004893186.1| - 1.1 9.3 25.9 3.6 7.7 0.7 5.1 2 2 3 5 5 5 0 TolA binding protein trimerisation DUF148 PF02520.17 gi|352682662|ref|YP_004893186.1| - 1.1 9.3 27.6 1.3 9.2 4.4 4.1 2 2 0 3 3 3 0 Domain of unknown function DUF148 CENP-K PF11802.8 gi|352682662|ref|YP_004893186.1| - 1.2 8.7 34.0 2 7.9 17.6 2.4 1 1 0 2 2 2 0 Centromere-associated protein K TMF_DNA_bd PF12329.8 gi|352682662|ref|YP_004893186.1| - 1.2 9.2 52.3 0.39 10.7 4.4 5.2 2 2 3 5 5 5 0 TATA element modulatory factor 1 DNA binding DegS PF05384.11 gi|352682662|ref|YP_004893186.1| - 1.2 8.6 40.7 1.4 8.4 16.3 4.1 2 2 3 5 5 5 0 Sensor protein DegS TSC22 PF01166.18 gi|352682662|ref|YP_004893186.1| - 1.2 9.4 29.4 2.8 8.3 0.6 6.6 2 2 2 5 5 5 0 TSC-22/dip/bun family SHE3 PF17078.5 gi|352682662|ref|YP_004893186.1| - 1.3 8.6 36.0 1.5 8.5 11.7 2.5 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 DUF4988 PF16378.5 gi|352682662|ref|YP_004893186.1| - 1.5 8.4 16.1 0.46 10.1 1.5 3.5 2 2 1 3 3 3 0 Domain of unknown function T3SSipB PF16535.5 gi|352682662|ref|YP_004893186.1| - 1.6 9.2 22.5 3 8.3 2.1 3.0 2 1 0 2 2 2 0 Type III cell invasion protein SipB CheZ PF04344.13 gi|352682662|ref|YP_004893186.1| - 1.6 8.6 18.5 2.2 8.2 3.7 2.9 1 1 0 2 2 2 0 Chemotaxis phosphatase, CheZ Med4 PF10018.9 gi|352682662|ref|YP_004893186.1| - 1.6 8.3 32.5 0.025 14.3 7.2 4.2 2 2 1 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 FmiP_Thoc5 PF09766.9 gi|352682662|ref|YP_004893186.1| - 1.7 7.8 35.1 0.17 11.1 2.6 4.1 1 1 3 4 4 4 0 Fms-interacting protein/Thoc5 Swi5 PF07061.11 gi|352682662|ref|YP_004893186.1| - 1.8 8.7 37.5 10 6.3 0.3 6.6 2 2 2 4 4 4 0 Swi5 UPF0242 PF06785.11 gi|352682662|ref|YP_004893186.1| - 1.9 8.5 38.0 3.9 7.5 18.2 3.1 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus DUF4140 PF13600.6 gi|352682662|ref|YP_004893186.1| - 2 8.9 39.6 3.2 8.2 2.7 6.3 2 2 3 5 5 4 0 N-terminal domain of unknown function (DUF4140) PRKG1_interact PF15898.5 gi|352682662|ref|YP_004893186.1| - 2 9.3 40.0 0.44 11.5 12.0 4.2 2 2 1 3 3 3 0 cGMP-dependent protein kinase interacting domain UBA_2 PF08587.11 gi|352682662|ref|YP_004893186.1| - 2.2 8.5 6.2 13 6.0 0.2 3.8 3 0 0 3 3 3 0 Ubiquitin associated domain (UBA) MCPsignal PF00015.21 gi|352682662|ref|YP_004893186.1| - 2.3 8.0 16.1 2 8.2 4.3 2.7 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF5339 PF17274.2 gi|352682662|ref|YP_004893186.1| - 2.5 9.0 19.6 25 5.8 0.2 5.4 2 2 1 3 3 3 0 Family of unknown function (DUF5339) COG6 PF06419.11 gi|352682662|ref|YP_004893186.1| - 2.5 6.2 29.9 0.69 8.1 5.7 3.9 2 2 2 4 4 4 0 Conserved oligomeric complex COG6 eIF3_N PF09440.10 gi|352682662|ref|YP_004893186.1| - 2.8 8.4 21.4 1.4 9.4 4.2 4.1 1 1 1 3 3 3 0 eIF3 subunit 6 N terminal domain PI_PP_I PF18363.1 gi|352682662|ref|YP_004893186.1| - 3.2 8.0 9.4 14 5.9 0.8 3.5 2 2 2 4 4 4 0 Phosphoinositide phosphatase insertion domain AI-2E_transport PF01594.16 gi|352682662|ref|YP_004893186.1| - 3.3 6.8 4.3 15 4.6 0.7 2.5 2 1 0 2 2 2 0 AI-2E family transporter Prefoldin_3 PF13758.6 gi|352682662|ref|YP_004893186.1| - 3.3 7.8 19.9 9.8 6.3 0.1 5.1 2 2 3 5 5 5 0 Prefoldin subunit kleA_kleC PF17383.2 gi|352682662|ref|YP_004893186.1| - 3.3 8.1 22.6 1.8 9.0 0.2 5.0 3 2 1 5 5 5 0 Uncharacterized KorC regulated protein A HCMV_UL139 PF12507.8 gi|352682662|ref|YP_004893186.1| - 3.6 8.0 21.2 13 6.2 2.2 4.5 1 1 4 5 5 5 0 Human Cytomegalovirus UL139 protein Mito_fiss_reg PF05308.11 gi|352682662|ref|YP_004893186.1| - 4.7 7.2 20.9 0.74 9.9 0.6 3.7 2 2 1 3 3 3 0 Mitochondrial fission regulator DUF3037 PF11236.8 gi|352682662|ref|YP_004893186.1| - 4.9 7.6 8.3 34 4.9 1.1 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3037) GrpE PF01025.19 gi|352682662|ref|YP_004893186.1| - 5 6.7 38.6 1.5 8.4 2.1 4.3 2 2 2 4 4 4 0 GrpE RasGAP_C PF03836.15 gi|352682662|ref|YP_004893186.1| - 5.9 7.0 35.7 6.7 6.9 10.4 4.0 2 2 0 2 2 2 0 RasGAP C-terminus DUF4795 PF16043.5 gi|352682662|ref|YP_004893186.1| - 5.9 6.4 37.2 5.6 6.5 9.0 3.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) Vps51 PF08700.11 gi|352682662|ref|YP_004893186.1| - 6.1 7.0 33.5 12 6.1 0.6 6.9 2 2 4 6 6 5 0 Vps51/Vps67 TraF_2 PF13729.6 gi|352682662|ref|YP_004893186.1| - 6.2 6.1 10.1 7.6 5.8 1.4 2.7 2 2 0 2 2 2 0 F plasmid transfer operon, TraF, protein zf-C4H2 PF10146.9 gi|352682662|ref|YP_004893186.1| - 7.1 6.9 37.2 3.1 8.1 11.5 2.6 1 1 1 2 2 2 0 Zinc finger-containing protein SlyX PF04102.12 gi|352682662|ref|YP_004893186.1| - 7.9 7.2 27.6 2 9.1 3.0 5.3 3 2 3 6 6 5 0 SlyX AIP3 PF03915.13 gi|352682662|ref|YP_004893186.1| - 8 5.4 31.5 2.6 7.0 8.9 2.1 1 1 0 2 2 2 0 Actin interacting protein 3 She9_MDM33 PF05546.11 gi|352682662|ref|YP_004893186.1| - 8.3 6.2 34.6 0.76 9.5 3.9 3.9 2 2 2 4 4 4 0 She9 / Mdm33 family SKA1 PF07160.12 gi|352682662|ref|YP_004893186.1| - 8.4 6.2 29.1 2.2 8.1 2.4 4.0 2 2 1 3 3 3 0 Spindle and kinetochore-associated protein 1 DUF489 PF04356.12 gi|352682662|ref|YP_004893186.1| - 9.3 6.2 19.1 0.16 12.0 1.1 3.4 1 1 3 4 4 4 0 Protein of unknown function (DUF489) AAA_27 PF13514.6 gi|352682662|ref|YP_004893186.1| - 9.3 5.8 15.9 7.4 6.1 1.6 3.7 2 2 2 5 5 5 0 AAA domain HTH_31 PF13560.6 gi|352682663|ref|YP_004893187.1| - 1.4e-08 35.0 0.2 3.3e-08 33.8 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|352682663|ref|YP_004893187.1| - 4e-07 30.0 0.0 7.9e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|352682663|ref|YP_004893187.1| - 5.6e-07 29.5 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|352682663|ref|YP_004893187.1| - 0.036 13.8 0.0 0.086 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Hpr_kinase_N PF02603.16 gi|352682663|ref|YP_004893187.1| - 0.055 13.5 0.0 0.097 12.7 0.0 1.4 1 0 0 1 1 1 0 HPr Serine kinase N terminus Ribosomal_L13e PF01294.18 gi|352682664|ref|YP_004893188.1| - 1.3e-08 34.9 5.6 6.4e-08 32.7 5.8 1.9 1 1 1 2 2 2 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|352682664|ref|YP_004893188.1| - 8.8e-05 22.3 1.8 8.8e-05 22.3 1.8 1.9 2 1 0 2 2 2 1 Ribosomal L15 DUF2594 PF10769.9 gi|352682667|ref|YP_004893191.1| - 0.067 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2594) TFIIB PF00382.19 gi|352682668|ref|YP_004893192.1| - 9.4e-31 105.7 1.6 7e-16 58.0 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|352682668|ref|YP_004893192.1| - 4e-17 61.5 1.9 6.1e-17 60.9 1.9 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|352682668|ref|YP_004893192.1| - 1.5e-09 37.7 0.3 4.1e-05 23.3 0.2 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Cyclin_C PF02984.19 gi|352682668|ref|YP_004893192.1| - 5.4e-07 29.7 0.0 0.00055 20.0 0.0 2.4 2 0 0 2 2 2 2 Cyclin, C-terminal domain TFIIB_C_1 PF18542.1 gi|352682668|ref|YP_004893192.1| - 0.0025 17.8 1.8 0.0025 17.8 1.8 1.9 2 0 0 2 2 1 1 Transcription factor IIB C-terminal module 1 A2L_zn_ribbon PF08792.10 gi|352682668|ref|YP_004893192.1| - 0.0083 15.8 1.8 0.015 15.0 1.8 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Ribosomal_S27e PF01667.17 gi|352682668|ref|YP_004893192.1| - 0.025 14.3 1.4 0.046 13.4 1.4 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 Prim_Zn_Ribbon PF08273.12 gi|352682668|ref|YP_004893192.1| - 0.029 14.6 0.5 0.059 13.7 0.5 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF2318 PF10080.9 gi|352682668|ref|YP_004893192.1| - 0.031 14.4 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) baeRF_family2 PF18844.1 gi|352682668|ref|YP_004893192.1| - 0.035 14.2 0.2 0.11 12.5 0.1 1.8 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 HTH_Tnp_ISL3 PF13542.6 gi|352682668|ref|YP_004893192.1| - 0.046 13.2 1.3 1.5 8.3 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 RB_B PF01857.20 gi|352682668|ref|YP_004893192.1| - 0.11 12.5 0.1 0.17 11.9 0.1 1.3 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain zf-RRN7 PF11781.8 gi|352682668|ref|YP_004893192.1| - 0.15 11.8 3.0 0.29 10.8 3.0 1.5 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-RING_9 PF13901.6 gi|352682668|ref|YP_004893192.1| - 0.23 11.4 0.7 0.49 10.3 0.1 1.7 2 0 0 2 2 2 0 Putative zinc-RING and/or ribbon Desulfoferrod_N PF06397.12 gi|352682668|ref|YP_004893192.1| - 0.39 10.4 5.8 0.87 9.3 5.8 1.6 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Auto_anti-p27 PF06677.12 gi|352682668|ref|YP_004893192.1| - 0.59 10.3 2.4 1.2 9.4 2.4 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-FPG_IleRS PF06827.14 gi|352682668|ref|YP_004893192.1| - 1.4 8.9 3.7 21 5.1 0.1 2.9 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-Di19 PF05605.12 gi|352682668|ref|YP_004893192.1| - 2 8.8 4.1 12 6.2 0.5 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding AAA PF00004.29 gi|352682669|ref|YP_004893193.1| - 1.5e-14 54.5 0.0 3e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|352682669|ref|YP_004893193.1| - 4e-14 52.7 0.0 1.9e-09 37.5 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|352682669|ref|YP_004893193.1| - 2.3e-10 40.7 0.0 7.1e-10 39.2 0.0 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain RuvB_N PF05496.12 gi|352682669|ref|YP_004893193.1| - 4.8e-08 32.9 0.0 1.4e-07 31.4 0.0 1.8 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|352682669|ref|YP_004893193.1| - 6.6e-08 33.1 0.3 0.0012 19.2 0.0 3.0 2 2 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|352682669|ref|YP_004893193.1| - 5.4e-06 26.7 0.2 0.048 13.9 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_assoc_2 PF16193.5 gi|352682669|ref|YP_004893193.1| - 5.4e-06 26.7 0.9 1.4e-05 25.3 0.2 2.0 2 1 0 2 2 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|352682669|ref|YP_004893193.1| - 6.1e-06 26.3 0.0 1.4e-05 25.1 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|352682669|ref|YP_004893193.1| - 3e-05 23.9 0.0 5.7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|352682669|ref|YP_004893193.1| - 7.1e-05 22.7 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|352682669|ref|YP_004893193.1| - 9.5e-05 22.4 0.0 0.00016 21.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|352682669|ref|YP_004893193.1| - 0.00014 21.9 0.1 0.00053 20.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|352682669|ref|YP_004893193.1| - 0.0002 21.5 0.2 0.0006 20.0 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.6 gi|352682669|ref|YP_004893193.1| - 0.00022 20.9 0.0 0.00045 19.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|352682669|ref|YP_004893193.1| - 0.0003 20.8 0.0 0.0032 17.5 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|352682669|ref|YP_004893193.1| - 0.00046 19.6 0.0 0.0072 15.7 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|352682669|ref|YP_004893193.1| - 0.00088 19.1 0.0 0.0021 17.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352682669|ref|YP_004893193.1| - 0.001 19.6 0.0 0.006 17.1 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|352682669|ref|YP_004893193.1| - 0.0013 18.5 0.1 0.0041 16.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|352682669|ref|YP_004893193.1| - 0.0037 17.6 0.1 0.016 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|352682669|ref|YP_004893193.1| - 0.0054 16.3 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region DEAD PF00270.29 gi|352682669|ref|YP_004893193.1| - 0.0056 16.5 0.2 0.12 12.1 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase PhoH PF02562.16 gi|352682669|ref|YP_004893193.1| - 0.0056 16.1 0.5 0.75 9.2 0.0 2.3 1 1 1 2 2 2 1 PhoH-like protein DNA_pol3_delta PF06144.13 gi|352682669|ref|YP_004893193.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit RNA_helicase PF00910.22 gi|352682669|ref|YP_004893193.1| - 0.014 15.8 0.0 0.037 14.4 0.0 1.7 2 0 0 2 2 1 0 RNA helicase T2SSE PF00437.20 gi|352682669|ref|YP_004893193.1| - 0.015 14.3 0.0 0.16 11.0 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein TniB PF05621.11 gi|352682669|ref|YP_004893193.1| - 0.018 14.5 0.1 0.24 10.8 0.0 2.2 1 1 0 2 2 2 0 Bacterial TniB protein AAA_28 PF13521.6 gi|352682669|ref|YP_004893193.1| - 0.019 15.2 0.1 0.041 14.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|352682669|ref|YP_004893193.1| - 0.026 13.8 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|352682669|ref|YP_004893193.1| - 0.033 13.9 0.1 0.11 12.2 0.0 1.9 2 1 0 2 2 2 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|352682669|ref|YP_004893193.1| - 0.047 13.0 0.0 0.92 8.8 0.0 2.1 1 1 1 2 2 2 0 FtsK/SpoIIIE family MeaB PF03308.16 gi|352682669|ref|YP_004893193.1| - 0.059 12.3 0.2 1.1 8.2 0.0 2.3 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2075 PF09848.9 gi|352682669|ref|YP_004893193.1| - 0.082 12.1 0.0 1 8.5 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|352682669|ref|YP_004893193.1| - 0.14 11.9 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TGS PF02824.21 gi|352682671|ref|YP_004893195.1| - 1.2e-16 60.5 0.0 9e-16 57.7 0.0 2.2 2 0 0 2 2 2 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|352682671|ref|YP_004893195.1| - 2.6e-08 33.8 0.0 6.1e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|352682671|ref|YP_004893195.1| - 3.3e-07 30.4 0.0 8e-07 29.1 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase CBS PF00571.28 gi|352682671|ref|YP_004893195.1| - 0.00011 22.5 0.1 1.1 9.8 0.0 3.0 3 0 0 3 3 3 2 CBS domain YchF-GTPase_C PF06071.13 gi|352682671|ref|YP_004893195.1| - 0.00061 19.9 0.5 0.48 10.7 0.0 3.2 2 1 0 2 2 2 2 Protein of unknown function (DUF933) FeoB_N PF02421.18 gi|352682671|ref|YP_004893195.1| - 0.016 14.7 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B Oxidored_nitro PF00148.19 gi|352682671|ref|YP_004893195.1| - 0.2 10.4 1.3 2.5 6.7 0.0 2.5 2 1 1 3 3 3 0 Nitrogenase component 1 type Oxidoreductase ECH_1 PF00378.20 gi|352682672|ref|YP_004893196.1| - 3.1e-18 66.0 0.0 3.8e-18 65.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|352682672|ref|YP_004893196.1| - 0.0035 16.9 0.2 0.0054 16.3 0.0 1.5 2 0 0 2 2 2 1 Enoyl-CoA hydratase/isomerase Iso_dh PF00180.20 gi|352682673|ref|YP_004893197.1| - 3.7e-96 322.3 0.0 4.5e-96 322.0 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TAF PF02969.17 gi|352682673|ref|YP_004893197.1| - 0.15 12.2 0.2 4 7.7 0.0 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) Acetyltransf_1 PF00583.25 gi|352682674|ref|YP_004893198.1| - 9.6e-16 58.1 0.0 1.2e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|352682674|ref|YP_004893198.1| - 1.8e-13 50.7 0.0 3.1e-13 49.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|352682674|ref|YP_004893198.1| - 4.6e-13 49.2 0.0 6.5e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|352682674|ref|YP_004893198.1| - 1.6e-08 34.4 0.0 2.7e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|352682674|ref|YP_004893198.1| - 1.4e-06 28.5 0.0 1.8e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|352682674|ref|YP_004893198.1| - 0.00015 21.9 0.0 0.00051 20.1 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|352682674|ref|YP_004893198.1| - 0.0077 15.9 0.0 0.022 14.4 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|352682674|ref|YP_004893198.1| - 0.018 14.5 0.2 0.05 13.1 0.2 1.7 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_CG PF14542.6 gi|352682674|ref|YP_004893198.1| - 0.02 15.0 0.0 0.034 14.3 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Gly_acyl_tr_C PF08444.10 gi|352682674|ref|YP_004893198.1| - 0.22 11.8 0.0 0.34 11.2 0.0 1.3 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region NMD3 PF04981.13 gi|352682675|ref|YP_004893199.1| - 5.9e-34 117.6 0.0 8.5e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 NMD3 family ADD_ATRX PF17981.1 gi|352682675|ref|YP_004893199.1| - 0.021 14.6 1.0 0.053 13.4 1.0 1.7 1 0 0 1 1 1 0 Cysteine Rich ADD domain DZR PF12773.7 gi|352682675|ref|YP_004893199.1| - 0.059 13.4 1.6 0.82 9.7 0.9 2.4 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|352682675|ref|YP_004893199.1| - 0.24 11.6 4.2 3.9 7.7 0.1 3.3 3 0 0 3 3 3 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|352682675|ref|YP_004893199.1| - 0.4 10.4 5.9 0.14 11.9 1.4 2.6 2 1 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHCC PF10276.9 gi|352682675|ref|YP_004893199.1| - 0.71 10.0 4.9 0.29 11.2 0.3 2.7 3 0 0 3 3 3 0 Zinc-finger domain zf-C2HC_2 PF13913.6 gi|352682675|ref|YP_004893199.1| - 1.4 8.9 4.2 3.2 7.8 0.2 2.6 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.6 gi|352682675|ref|YP_004893199.1| - 7.2 6.2 5.9 30 4.2 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Sgf11 PF08209.11 gi|352682675|ref|YP_004893199.1| - 8.5 6.0 6.8 13 5.5 0.1 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) DNA_methylase PF00145.17 gi|352682676|ref|YP_004893200.1| - 2.7e-48 165.0 0.0 8e-32 110.9 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase PDDEXK_1 PF12705.7 gi|352682677|ref|YP_004893201.1| - 0.0038 17.2 0.4 0.006 16.5 0.4 1.4 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily MAP PF03642.13 gi|352682677|ref|YP_004893201.1| - 0.02 15.2 0.0 0.036 14.4 0.0 1.4 1 0 0 1 1 1 0 MAP domain PA14 PF07691.12 gi|352682677|ref|YP_004893201.1| - 0.056 13.2 0.1 0.087 12.6 0.1 1.3 1 0 0 1 1 1 0 PA14 domain Pyr_redox_2 PF07992.14 gi|352682678|ref|YP_004893202.1| - 1.6e-30 106.4 0.5 1.9e-30 106.1 0.5 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|352682678|ref|YP_004893202.1| - 4.1e-14 52.5 1.6 5.9e-11 42.2 0.0 2.6 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|352682678|ref|YP_004893202.1| - 3.4e-09 36.3 1.8 2.9e-06 26.6 0.1 3.1 3 0 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.24 gi|352682678|ref|YP_004893202.1| - 4.6e-08 33.0 2.0 2e-05 24.4 0.6 2.5 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|352682678|ref|YP_004893202.1| - 5.7e-07 29.0 7.8 2.3e-06 26.9 1.8 3.0 3 1 1 4 4 4 1 FAD binding domain FAD_oxidored PF12831.7 gi|352682678|ref|YP_004893202.1| - 7.3e-07 28.9 0.1 7.3e-07 28.9 0.1 1.9 3 0 0 3 3 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|352682678|ref|YP_004893202.1| - 8.3e-05 23.1 0.5 0.1 13.2 0.7 3.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|352682678|ref|YP_004893202.1| - 9.8e-05 21.2 0.7 0.0049 15.6 0.9 2.5 2 1 1 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|352682678|ref|YP_004893202.1| - 0.0003 20.1 1.8 0.00066 19.0 0.3 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|352682678|ref|YP_004893202.1| - 0.0004 20.6 0.2 0.00096 19.3 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|352682678|ref|YP_004893202.1| - 0.0031 17.5 0.4 0.053 13.5 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|352682678|ref|YP_004893202.1| - 0.041 13.2 0.2 0.098 11.9 0.2 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|352682678|ref|YP_004893202.1| - 0.084 11.7 1.2 0.17 10.7 0.4 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|352682678|ref|YP_004893202.1| - 0.14 11.2 0.3 0.27 10.3 0.3 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein MmgE_PrpD PF03972.14 gi|352682679|ref|YP_004893203.1| - 2.4e-138 461.4 0.1 2.7e-138 461.2 0.1 1.0 1 0 0 1 1 1 1 MmgE/PrpD family PEP_mutase PF13714.6 gi|352682680|ref|YP_004893204.1| - 1.5e-63 214.4 0.7 1.9e-63 214.1 0.7 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|352682680|ref|YP_004893204.1| - 1.2e-13 50.4 0.1 1.6e-13 50.0 0.1 1.1 1 0 0 1 1 1 1 Isocitrate lyase family Pantoate_transf PF02548.15 gi|352682680|ref|YP_004893204.1| - 0.00057 19.3 0.5 0.006 16.0 0.3 2.1 1 1 1 2 2 2 1 Ketopantoate hydroxymethyltransferase AsnC_trans_reg2 PF17805.1 gi|352682681|ref|YP_004893205.1| - 5.5e-30 103.4 0.0 3.8e-17 62.2 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain TFIIE_alpha PF02002.17 gi|352682682|ref|YP_004893206.1| - 0.034 14.0 0.1 0.07 13.0 0.1 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit Ribosomal_L22 PF00237.19 gi|352682683|ref|YP_004893207.1| - 8.7e-23 80.5 0.0 1.2e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e UbiA PF01040.18 gi|352682684|ref|YP_004893208.1| - 1.4e-27 96.6 23.8 1.4e-27 96.6 23.8 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Potass_KdpF PF09604.10 gi|352682684|ref|YP_004893208.1| - 0.03 14.3 1.0 0.03 14.3 1.0 3.9 3 0 0 3 3 3 0 F subunit of K+-transporting ATPase (Potass_KdpF) HAD_2 PF13419.6 gi|352682685|ref|YP_004893209.1| - 7.9e-05 22.8 0.0 0.0012 18.9 0.0 2.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|352682685|ref|YP_004893209.1| - 0.0004 20.8 0.1 0.0013 19.2 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|352682685|ref|YP_004893209.1| - 0.0014 19.0 0.0 0.021 15.1 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|352682685|ref|YP_004893209.1| - 0.019 15.1 0.0 0.052 13.6 0.0 1.6 1 1 0 1 1 1 0 HAD-hyrolase-like HTH_24 PF13412.6 gi|352682686|ref|YP_004893210.1| - 5.4e-10 38.7 0.0 9.1e-10 38.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|352682686|ref|YP_004893210.1| - 2e-09 37.1 0.6 4.6e-09 36.0 0.6 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|352682686|ref|YP_004893210.1| - 7.8e-08 32.3 0.3 1.6e-07 31.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|352682686|ref|YP_004893210.1| - 6.3e-07 29.2 0.3 1.3e-06 28.2 0.3 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|352682686|ref|YP_004893210.1| - 9.2e-07 28.6 0.0 1.6e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|352682686|ref|YP_004893210.1| - 3.2e-06 27.2 0.0 7.9e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|352682686|ref|YP_004893210.1| - 5e-05 23.1 0.1 0.00013 21.7 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|352682686|ref|YP_004893210.1| - 0.00028 21.3 0.2 0.00044 20.7 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|352682686|ref|YP_004893210.1| - 0.00037 20.3 0.0 0.00062 19.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|352682686|ref|YP_004893210.1| - 0.0016 18.3 0.0 0.0031 17.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain LexA_DNA_bind PF01726.16 gi|352682686|ref|YP_004893210.1| - 0.0044 16.8 0.0 0.0082 15.9 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain Rrf2 PF02082.20 gi|352682686|ref|YP_004893210.1| - 0.0068 16.7 0.0 0.013 15.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|352682686|ref|YP_004893210.1| - 0.017 15.1 0.3 0.032 14.2 0.3 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|352682686|ref|YP_004893210.1| - 0.078 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.10 gi|352682686|ref|YP_004893210.1| - 0.081 13.0 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR PF01047.22 gi|352682686|ref|YP_004893210.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 MarR family SKG6 PF08693.10 gi|352682686|ref|YP_004893210.1| - 0.11 11.9 1.6 0.24 10.8 1.6 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain Cob_adeno_trans PF01923.18 gi|352682687|ref|YP_004893211.1| - 5.3e-16 59.2 0.0 6.6e-16 58.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase IKKbetaNEMObind PF12179.8 gi|352682687|ref|YP_004893211.1| - 0.18 11.9 0.2 0.31 11.1 0.2 1.3 1 0 0 1 1 1 0 I-kappa-kinase-beta NEMO binding domain Ribosomal_L38e PF01781.18 gi|352682688|ref|YP_004893212.1| - 0.0075 16.4 0.1 0.0095 16.0 0.1 1.3 1 1 0 1 1 1 1 Ribosomal L38e protein family Glyco_transf_9 PF01075.17 gi|352682688|ref|YP_004893212.1| - 0.097 12.0 0.0 0.11 11.8 0.0 1.0 1 0 0 1 1 1 0 Glycosyltransferase family 9 (heptosyltransferase) Ribosomal_60s PF00428.19 gi|352682689|ref|YP_004893213.1| - 4.9e-16 59.1 14.1 6.2e-16 58.8 14.1 1.2 1 0 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|352682689|ref|YP_004893213.1| - 0.0012 19.1 0.0 0.0017 18.6 0.0 1.2 1 0 0 1 1 1 1 EF-hand domain DUF3391 PF11871.8 gi|352682689|ref|YP_004893213.1| - 0.18 12.3 1.8 0.21 12.1 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) YjbE PF11106.8 gi|352682689|ref|YP_004893213.1| - 1.5 9.1 6.4 3.1 8.1 6.4 1.5 1 0 0 1 1 1 0 Exopolysaccharide production protein YjbE DUF2208 PF09973.9 gi|352682690|ref|YP_004893214.1| - 5.8e-61 206.0 7.3 6.6e-61 205.9 7.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) E1-E2_ATPase PF00122.20 gi|352682690|ref|YP_004893214.1| - 6.4 6.3 6.4 1.3 8.6 0.0 2.5 2 1 1 3 3 3 0 E1-E2 ATPase Peptidase_M50 PF02163.22 gi|352682692|ref|YP_004893216.1| - 2.7e-14 53.0 13.3 3.1e-13 49.6 13.3 2.2 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|352682692|ref|YP_004893216.1| - 2e-05 24.8 0.1 0.086 13.2 0.0 3.1 1 1 1 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|352682692|ref|YP_004893216.1| - 3.8e-05 23.4 0.8 0.034 14.0 0.0 2.9 3 0 0 3 3 3 2 PDZ domain Tricorn_PDZ PF14685.6 gi|352682692|ref|YP_004893216.1| - 0.075 13.0 0.3 3.5 7.7 0.1 2.4 2 0 0 2 2 2 0 Tricorn protease PDZ domain TIP49 PF06068.13 gi|352682694|ref|YP_004893218.1| - 2.5e-132 441.3 0.0 3.1e-132 441.0 0.0 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|352682694|ref|YP_004893218.1| - 8.7e-21 73.8 0.3 4.9e-20 71.4 0.1 2.4 3 0 0 3 3 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|352682694|ref|YP_004893218.1| - 1.2e-10 41.9 1.3 8.2e-08 32.8 0.0 2.6 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|352682694|ref|YP_004893218.1| - 1.6e-08 34.4 0.6 2.9e-06 27.1 0.0 2.8 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|352682694|ref|YP_004893218.1| - 3e-07 31.0 0.3 4.5e-06 27.2 0.3 2.4 1 1 0 1 1 1 1 AAA ATPase domain DnaB_C PF03796.15 gi|352682694|ref|YP_004893218.1| - 4.9e-05 22.8 0.0 0.00012 21.5 0.0 1.6 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|352682694|ref|YP_004893218.1| - 6.5e-05 23.2 0.2 0.086 13.1 0.1 2.4 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|352682694|ref|YP_004893218.1| - 0.00033 20.3 0.0 0.00066 19.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|352682694|ref|YP_004893218.1| - 0.0014 19.1 0.1 0.02 15.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|352682694|ref|YP_004893218.1| - 0.0019 17.9 0.2 0.03 14.0 0.0 2.5 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_28 PF13521.6 gi|352682694|ref|YP_004893218.1| - 0.0025 18.1 0.3 0.018 15.3 0.0 2.4 3 0 0 3 3 3 1 AAA domain IstB_IS21 PF01695.17 gi|352682694|ref|YP_004893218.1| - 0.0025 17.6 0.1 0.0052 16.5 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_5 PF07728.14 gi|352682694|ref|YP_004893218.1| - 0.0032 17.5 0.1 0.01 15.8 0.0 2.0 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|352682694|ref|YP_004893218.1| - 0.0034 17.5 0.0 0.011 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|352682694|ref|YP_004893218.1| - 0.0039 17.7 0.1 0.026 15.1 0.1 2.4 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|352682694|ref|YP_004893218.1| - 0.0059 16.0 0.2 0.014 14.8 0.1 1.7 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|352682694|ref|YP_004893218.1| - 0.0079 15.7 0.1 0.019 14.5 0.0 1.6 2 0 0 2 2 2 1 P-loop containing dynein motor region NACHT PF05729.12 gi|352682694|ref|YP_004893218.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_11 PF13086.6 gi|352682694|ref|YP_004893218.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|352682694|ref|YP_004893218.1| - 0.032 13.7 0.2 0.067 12.6 0.2 1.5 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.22 gi|352682694|ref|YP_004893218.1| - 0.033 14.6 0.0 0.066 13.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|352682694|ref|YP_004893218.1| - 0.061 13.7 0.7 0.15 12.4 0.4 1.8 2 0 0 2 2 1 0 AAA domain DUF2075 PF09848.9 gi|352682694|ref|YP_004893218.1| - 0.062 12.5 0.1 0.18 11.0 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|352682694|ref|YP_004893218.1| - 0.065 13.0 0.0 0.66 9.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|352682694|ref|YP_004893218.1| - 0.069 12.4 0.1 0.14 11.4 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.27 gi|352682694|ref|YP_004893218.1| - 0.099 13.2 0.0 0.22 12.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|352682694|ref|YP_004893218.1| - 0.13 12.2 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|352682694|ref|YP_004893218.1| - 0.22 11.2 1.3 0.49 10.1 0.7 2.0 2 1 0 2 2 2 0 AAA domain Citrate_synt PF00285.21 gi|352682696|ref|YP_004893220.1| - 3.3e-125 417.9 0.0 3.7e-125 417.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Malic_M PF03949.15 gi|352682697|ref|YP_004893221.1| - 1.1e-25 90.4 0.1 2.9e-24 85.8 0.1 2.1 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|352682697|ref|YP_004893221.1| - 4.1e-25 88.6 0.3 1.6e-15 57.4 0.2 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Shikimate_DH PF01488.20 gi|352682697|ref|YP_004893221.1| - 0.0042 17.2 0.1 5 7.2 0.1 2.6 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|352682697|ref|YP_004893221.1| - 0.072 12.4 0.0 1 8.7 0.0 2.4 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ThiF PF00899.21 gi|352682697|ref|YP_004893221.1| - 0.089 12.1 2.1 0.097 12.0 0.3 1.9 2 0 0 2 2 2 0 ThiF family Fe-ADH_2 PF13685.6 gi|352682699|ref|YP_004893223.1| - 1.8e-54 185.1 0.0 3.5e-54 184.1 0.0 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|352682699|ref|YP_004893223.1| - 1.9e-29 102.6 2.4 7.4e-28 97.4 2.4 2.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|352682699|ref|YP_004893223.1| - 2.8e-06 26.7 3.0 3.7e-05 23.0 0.2 2.8 2 1 0 2 2 2 1 3-dehydroquinate synthase DJ-1_PfpI PF01965.24 gi|352682700|ref|YP_004893224.1| - 2.3e-09 37.3 0.0 3e-08 33.7 0.0 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family FAD_binding_5 PF00941.21 gi|352682700|ref|YP_004893224.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.4 1 1 0 1 1 1 0 FAD binding domain in molybdopterin dehydrogenase AAA_17 PF13207.6 gi|352682701|ref|YP_004893225.1| - 3.2e-30 105.3 0.1 3.9e-30 105.0 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352682701|ref|YP_004893225.1| - 0.00022 21.8 0.1 0.00042 20.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|352682701|ref|YP_004893225.1| - 0.0025 17.5 0.3 0.17 11.6 0.0 2.4 2 1 0 2 2 2 1 Thymidylate kinase AAA_30 PF13604.6 gi|352682701|ref|YP_004893225.1| - 0.11 12.3 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain OMPdecase PF00215.24 gi|352682702|ref|YP_004893226.1| - 4.4e-17 62.4 0.6 5.5e-17 62.1 0.6 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|352682702|ref|YP_004893226.1| - 0.0055 16.1 0.2 0.011 15.1 0.2 1.6 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family 4HFCP_synth PF04476.13 gi|352682702|ref|YP_004893226.1| - 0.015 15.1 0.1 0.78 9.4 0.0 2.5 2 1 0 2 2 2 0 4-HFC-P synthase Nitro_FeMo-Co PF02579.17 gi|352682702|ref|YP_004893226.1| - 0.016 15.5 0.1 0.046 14.0 0.1 1.8 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor Smac_DIABLO PF09057.10 gi|352682702|ref|YP_004893226.1| - 0.016 14.5 0.1 0.023 14.1 0.1 1.2 1 0 0 1 1 1 0 Second Mitochondria-derived Activator of Caspases Radical_SAM PF04055.21 gi|352682702|ref|YP_004893226.1| - 0.077 13.4 0.6 0.16 12.3 0.6 1.6 1 1 0 1 1 1 0 Radical SAM superfamily CPT PF07931.12 gi|352682702|ref|YP_004893226.1| - 0.088 12.6 0.7 0.13 12.1 0.7 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Archease PF01951.16 gi|352682703|ref|YP_004893227.1| - 2.6e-37 128.2 0.0 2.9e-37 128.0 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) EAL PF00563.20 gi|352682704|ref|YP_004893228.1| - 0.024 14.1 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 EAL domain TetR_C_24 PF17932.1 gi|352682704|ref|YP_004893228.1| - 0.072 13.4 0.9 0.79 10.0 0.9 2.0 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Catalase-rel PF06628.12 gi|352682704|ref|YP_004893228.1| - 0.093 13.0 0.0 7.5 6.8 0.0 2.3 2 0 0 2 2 2 0 Catalase-related immune-responsive Sgf11 PF08209.11 gi|352682705|ref|YP_004893229.1| - 0.011 15.2 0.5 1.4 8.5 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Mu-like_Com PF10122.9 gi|352682705|ref|YP_004893229.1| - 0.029 13.8 0.6 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 Mu-like prophage protein Com RNHCP PF12647.7 gi|352682705|ref|YP_004893229.1| - 0.056 13.4 0.1 0.067 13.2 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain RNA_POL_M_15KD PF02150.16 gi|352682705|ref|YP_004893229.1| - 0.062 13.2 0.3 0.089 12.7 0.3 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|352682705|ref|YP_004893229.1| - 0.16 12.0 2.5 0.42 10.6 2.5 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-RING_7 PF02591.15 gi|352682705|ref|YP_004893229.1| - 0.16 12.2 3.1 0.6 10.3 0.2 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|352682705|ref|YP_004893229.1| - 0.24 11.3 0.1 0.24 11.3 0.1 2.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS Methyltrans_RNA PF04452.14 gi|352682706|ref|YP_004893230.1| - 0.093 12.1 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase tRNA_synthFbeta PF17759.1 gi|352682707|ref|YP_004893231.1| - 4.4e-23 81.9 0.0 6.8e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|352682707|ref|YP_004893231.1| - 1.5e-10 41.2 0.8 1.3e-08 35.0 0.4 2.8 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|352682707|ref|YP_004893231.1| - 1.5e-09 37.8 0.0 3.2e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|352682707|ref|YP_004893231.1| - 0.053 13.7 0.0 0.79 10.0 0.0 2.5 2 0 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain CYTH PF01928.21 gi|352682708|ref|YP_004893232.1| - 0.086 12.8 0.1 0.097 12.6 0.1 1.2 1 0 0 1 1 1 0 CYTH domain Ribosomal_S19 PF00203.21 gi|352682709|ref|YP_004893233.1| - 3.3e-31 107.0 0.0 4.5e-31 106.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 EutB PF06751.11 gi|352682709|ref|YP_004893233.1| - 0.1 11.4 0.0 0.13 11.1 0.0 1.0 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) Ribosomal_S17 PF00366.20 gi|352682710|ref|YP_004893234.1| - 1.1e-20 73.4 6.6 2.3e-20 72.4 5.2 1.9 2 0 0 2 2 2 1 Ribosomal protein S17 RsgI_N PF12791.7 gi|352682710|ref|YP_004893234.1| - 0.061 13.2 0.5 0.25 11.3 0.0 2.2 3 0 0 3 3 3 0 Anti-sigma factor N-terminus ERCC4 PF02732.15 gi|352682711|ref|YP_004893235.1| - 1.3e-16 61.2 0.0 2e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|352682711|ref|YP_004893235.1| - 0.00054 20.5 0.0 0.001 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|352682711|ref|YP_004893235.1| - 0.00072 19.3 0.0 0.0031 17.3 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|352682711|ref|YP_004893235.1| - 0.02 15.0 0.0 0.15 12.2 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|352682711|ref|YP_004893235.1| - 0.023 15.3 0.0 0.046 14.3 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold IMS_HHH PF11798.8 gi|352682711|ref|YP_004893235.1| - 0.026 14.8 0.1 0.079 13.3 0.0 1.9 2 0 0 2 2 2 0 IMS family HHH motif NmrA PF05368.13 gi|352682711|ref|YP_004893235.1| - 0.031 13.8 0.0 0.075 12.6 0.0 1.6 1 1 0 1 1 1 0 NmrA-like family HHH_3 PF12836.7 gi|352682711|ref|YP_004893235.1| - 0.05 13.9 0.1 0.15 12.4 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif Glyco_hydro_1 PF00232.18 gi|352682712|ref|YP_004893236.1| - 1.1e-22 80.1 6.8 6.2e-22 77.6 2.1 2.9 1 1 2 3 3 3 2 Glycosyl hydrolase family 1 Glyco_hydro_42 PF02449.15 gi|352682712|ref|YP_004893236.1| - 6.7e-06 25.7 0.3 2e-05 24.1 0.1 1.7 2 0 0 2 2 2 1 Beta-galactosidase Cellulase PF00150.18 gi|352682712|ref|YP_004893236.1| - 6.7e-05 22.5 0.2 0.00041 19.9 0.1 1.9 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) AP_endonuc_2 PF01261.24 gi|352682712|ref|YP_004893236.1| - 0.00035 20.1 0.0 0.01 15.3 0.0 2.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_35 PF01301.19 gi|352682712|ref|YP_004893236.1| - 0.012 15.2 0.1 0.023 14.3 0.1 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 35 Glyco_hydro_59 PF02057.15 gi|352682712|ref|YP_004893236.1| - 0.029 13.6 0.9 0.044 13.0 0.9 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 59 Usp PF00582.26 gi|352682713|ref|YP_004893237.1| - 8.5e-11 42.5 0.0 1e-08 35.8 0.0 2.0 1 1 0 1 1 1 1 Universal stress protein family SRP54 PF00448.22 gi|352682713|ref|YP_004893237.1| - 0.069 12.8 0.0 0.087 12.4 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Gp_dh_C PF02800.20 gi|352682714|ref|YP_004893238.1| - 1.5e-15 57.1 0.0 2.3e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|352682714|ref|YP_004893238.1| - 1.3e-13 51.1 0.3 2.4e-13 50.3 0.3 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|352682714|ref|YP_004893238.1| - 5.6e-05 23.4 0.1 0.00025 21.3 0.0 2.0 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|352682714|ref|YP_004893238.1| - 0.0007 20.4 0.1 0.0021 18.9 0.1 1.8 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|352682714|ref|YP_004893238.1| - 0.001 18.5 1.2 0.047 13.1 0.4 2.7 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|352682714|ref|YP_004893238.1| - 0.0035 17.9 0.9 0.056 14.0 0.2 3.1 2 2 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|352682714|ref|YP_004893238.1| - 0.0047 17.6 0.7 0.013 16.2 0.2 2.0 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|352682714|ref|YP_004893238.1| - 0.0063 16.8 0.1 0.012 15.9 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain OCD_Mu_crystall PF02423.15 gi|352682714|ref|YP_004893238.1| - 0.014 14.3 0.1 0.014 14.3 0.1 1.6 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family IlvN PF07991.12 gi|352682714|ref|YP_004893238.1| - 0.018 14.6 0.5 0.46 10.0 0.1 2.4 1 1 1 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Semialdhyde_dh PF01118.24 gi|352682714|ref|YP_004893238.1| - 0.033 14.6 0.0 0.11 12.9 0.1 1.8 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|352682714|ref|YP_004893238.1| - 0.036 13.9 0.4 0.089 12.7 0.4 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|352682714|ref|YP_004893238.1| - 0.052 13.8 0.0 0.12 12.7 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain Semialdhyde_dhC PF02774.18 gi|352682714|ref|YP_004893238.1| - 0.099 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, dimerisation domain PglD_N PF17836.1 gi|352682714|ref|YP_004893238.1| - 0.12 13.0 0.1 0.32 11.7 0.1 1.8 1 0 0 1 1 1 0 PglD N-terminal domain AdoHcyase_NAD PF00670.21 gi|352682714|ref|YP_004893238.1| - 0.15 12.1 1.8 0.22 11.6 0.2 2.1 2 1 1 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PGK PF00162.19 gi|352682715|ref|YP_004893239.1| - 1e-64 218.9 0.0 1.1e-64 218.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase B12-binding PF02310.19 gi|352682715|ref|YP_004893239.1| - 0.067 13.2 0.2 0.39 10.8 0.0 2.2 2 0 0 2 2 2 0 B12 binding domain DUF2204 PF09970.9 gi|352682716|ref|YP_004893240.1| - 1.2e-53 181.5 5.2 1.3e-53 181.3 5.2 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) RNA_binding PF01877.17 gi|352682716|ref|YP_004893240.1| - 0.061 13.6 0.9 0.089 13.1 0.9 1.4 1 0 0 1 1 1 0 RNA binding tRNA-Thr_ED PF08915.11 gi|352682718|ref|YP_004893242.1| - 5.5e-44 149.6 0.0 1.3e-43 148.4 0.0 1.6 2 0 0 2 2 2 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|352682718|ref|YP_004893242.1| - 9.4e-24 83.4 0.7 2.4e-23 82.1 0.7 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|352682718|ref|YP_004893242.1| - 4.7e-17 62.5 0.2 1e-16 61.5 0.2 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon2 PF12745.7 gi|352682718|ref|YP_004893242.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs INT_SG_DDX_CT_C PF15300.6 gi|352682718|ref|YP_004893242.1| - 0.045 13.6 0.1 0.11 12.4 0.1 1.6 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus AdoMet_dc PF02675.15 gi|352682719|ref|YP_004893243.1| - 1.6e-34 118.3 0.0 1.8e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase Peptidase_M48 PF01435.18 gi|352682721|ref|YP_004893245.1| - 9.8e-38 129.9 0.0 1.7e-37 129.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|352682721|ref|YP_004893245.1| - 5.7 6.0 7.3 0.34 10.0 1.6 2.0 2 1 0 2 2 2 0 BlaR1 peptidase M56 PadR PF03551.14 gi|352682722|ref|YP_004893246.1| - 9.9e-08 31.8 0.0 1.5e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Inos-1-P_synth PF01658.17 gi|352682723|ref|YP_004893247.1| - 1e-23 83.6 0.0 2.6e-23 82.4 0.0 1.6 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase RE_Bpu10I PF09549.10 gi|352682723|ref|YP_004893247.1| - 0.15 11.6 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Bpu10I restriction endonuclease CN_hydrolase PF00795.22 gi|352682724|ref|YP_004893248.1| - 7.7e-19 68.0 0.0 2.3e-17 63.2 0.0 2.0 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase Glyco_tranf_2_3 PF13641.6 gi|352682725|ref|YP_004893249.1| - 6.2e-18 65.5 0.0 8.9e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|352682725|ref|YP_004893249.1| - 7.1e-13 48.9 3.1 1.1e-12 48.2 3.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|352682725|ref|YP_004893249.1| - 1.7e-10 41.0 0.0 5.4e-10 39.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|352682725|ref|YP_004893249.1| - 0.00031 20.3 0.0 0.00045 19.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 DUF1732 PF08340.11 gi|352682725|ref|YP_004893249.1| - 0.026 14.5 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1732) Cellulose_synt PF03552.14 gi|352682725|ref|YP_004893249.1| - 0.057 11.9 3.2 0.11 10.9 2.6 1.6 2 0 0 2 2 2 0 Cellulose synthase CCG PF02754.16 gi|352682726|ref|YP_004893250.1| - 3.9e-14 52.6 0.1 7.3e-10 38.9 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|352682726|ref|YP_004893250.1| - 1.6e-10 41.0 7.6 3.5e-10 39.9 7.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|352682726|ref|YP_004893250.1| - 4.6e-10 39.8 4.0 8.3e-10 39.0 4.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352682726|ref|YP_004893250.1| - 1.8e-09 37.6 6.0 3.5e-09 36.7 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352682726|ref|YP_004893250.1| - 4.8e-08 33.8 6.1 1.2e-07 32.5 6.2 1.7 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|352682726|ref|YP_004893250.1| - 1.4e-06 28.8 7.7 4.6e-06 27.1 7.7 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|352682726|ref|YP_004893250.1| - 2.1e-06 28.2 5.9 9.4e-06 26.1 6.3 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|352682726|ref|YP_004893250.1| - 5.6e-05 23.2 6.8 0.034 14.3 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|352682726|ref|YP_004893250.1| - 0.00011 21.9 17.6 0.023 14.5 2.0 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|352682726|ref|YP_004893250.1| - 0.00048 20.1 15.3 0.12 12.5 3.5 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|352682726|ref|YP_004893250.1| - 0.00087 20.1 1.1 1.7 9.5 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352682726|ref|YP_004893250.1| - 0.0036 17.7 10.9 0.015 15.7 1.1 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|352682726|ref|YP_004893250.1| - 0.009 16.2 3.2 0.2 11.9 0.2 2.8 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|352682726|ref|YP_004893250.1| - 0.056 14.4 6.0 0.056 14.4 6.0 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|352682726|ref|YP_004893250.1| - 0.48 10.6 21.0 0.24 11.5 5.8 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|352682726|ref|YP_004893250.1| - 0.68 10.7 6.4 1.6 9.5 0.5 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Cas_Cas4 PF01930.17 gi|352682727|ref|YP_004893251.1| - 6.7e-18 65.3 0.3 1.6e-17 64.1 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|352682727|ref|YP_004893251.1| - 4.6e-09 36.6 1.5 1.4e-05 25.1 1.3 2.9 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|352682727|ref|YP_004893251.1| - 0.0012 19.2 0.1 0.0019 18.5 0.1 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|352682727|ref|YP_004893251.1| - 0.0015 18.5 0.1 0.0024 17.8 0.1 1.3 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) NucS PF01939.16 gi|352682727|ref|YP_004893251.1| - 0.059 12.7 0.9 0.078 12.3 0.9 1.2 1 0 0 1 1 1 0 Endonuclease NucS Csa1 PF06023.12 gi|352682727|ref|YP_004893251.1| - 0.13 11.6 2.9 0.69 9.2 0.7 2.1 1 1 0 2 2 2 0 CRISPR-associated exonuclease Csa1 GTP_EFTU PF00009.27 gi|352682728|ref|YP_004893252.1| - 4.5e-21 75.3 0.0 9.8e-21 74.2 0.0 1.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|352682728|ref|YP_004893252.1| - 1.2e-05 25.7 0.6 1.2e-05 25.7 0.6 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|352682728|ref|YP_004893252.1| - 0.002 18.4 0.0 0.0041 17.4 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|352682728|ref|YP_004893252.1| - 0.003 17.6 0.0 0.021 14.9 0.0 2.3 1 1 1 2 2 2 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|352682728|ref|YP_004893252.1| - 0.0054 16.5 0.0 4.4 7.0 0.0 3.3 2 1 1 3 3 3 2 Ethanolamine utilisation - propanediol utilisation H_PPase PF03030.16 gi|352682729|ref|YP_004893253.1| - 6.6e-234 778.4 40.1 7.6e-234 778.2 40.1 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase V_ATPase_I PF01496.19 gi|352682730|ref|YP_004893254.1| - 4e-24 84.6 5.8 1.1e-18 66.6 0.0 3.7 4 0 0 4 4 4 2 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.9 gi|352682730|ref|YP_004893254.1| - 1 9.7 3.8 2.8 8.3 0.1 3.3 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF5101 PF17031.5 gi|352682730|ref|YP_004893254.1| - 2.3 8.4 5.5 0.6 10.2 1.9 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5101) APG17 PF04108.12 gi|352682730|ref|YP_004893254.1| - 3.7 6.6 5.6 9.1 5.3 0.0 2.6 3 0 0 3 3 3 0 Autophagy protein Apg17 MTHFR PF02219.17 gi|352682731|ref|YP_004893255.1| - 0.00093 18.6 0.0 0.0022 17.4 0.0 1.6 2 0 0 2 2 2 1 Methylenetetrahydrofolate reductase UPF0086 PF01868.16 gi|352682732|ref|YP_004893256.1| - 0.0051 16.7 0.0 0.0056 16.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|352682733|ref|YP_004893257.1| - 1.3e-14 53.9 5.5 1.6e-14 53.6 5.5 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Spectrin_like PF18373.1 gi|352682733|ref|YP_004893257.1| - 0.13 12.3 0.1 0.21 11.7 0.1 1.3 1 0 0 1 1 1 0 Spectrin like domain Ribosomal_S3_C PF00189.20 gi|352682734|ref|YP_004893258.1| - 2.8e-19 69.4 2.4 5e-19 68.6 2.4 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|352682734|ref|YP_004893258.1| - 5.9e-10 38.8 0.8 1.5e-09 37.6 0.2 1.9 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|352682734|ref|YP_004893258.1| - 0.0074 16.1 0.3 0.019 14.8 0.2 1.8 2 0 0 2 2 2 1 KH domain ALAD PF00490.21 gi|352682735|ref|YP_004893259.1| - 7.7e-139 462.3 0.0 8.7e-139 462.1 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase PEP_mutase PF13714.6 gi|352682735|ref|YP_004893259.1| - 0.14 11.6 1.6 5 6.5 0.1 2.6 2 1 0 2 2 2 0 Phosphoenolpyruvate phosphomutase NAD_binding_7 PF13241.6 gi|352682736|ref|YP_004893260.1| - 7e-19 68.2 0.1 1.9e-18 66.8 0.0 1.7 2 0 0 2 2 2 1 Putative NAD(P)-binding Rossmann-like PF10727.9 gi|352682736|ref|YP_004893260.1| - 0.00042 20.2 0.0 0.00085 19.2 0.0 1.5 1 0 0 1 1 1 1 Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|352682736|ref|YP_004893260.1| - 0.00066 19.1 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|352682736|ref|YP_004893260.1| - 0.0078 16.8 0.0 0.015 15.9 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|352682736|ref|YP_004893260.1| - 0.049 13.2 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|352682736|ref|YP_004893260.1| - 0.12 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF5042 PF16445.5 gi|352682736|ref|YP_004893260.1| - 0.16 10.3 0.0 0.27 9.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5042) HEM4 PF02602.15 gi|352682737|ref|YP_004893261.1| - 4.7e-16 58.8 0.1 6.4e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DFP PF04127.15 gi|352682737|ref|YP_004893261.1| - 0.064 13.1 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein TP_methylase PF00590.20 gi|352682738|ref|YP_004893262.1| - 7.3e-48 163.3 0.3 8.4e-48 163.1 0.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Aminotran_3 PF00202.21 gi|352682739|ref|YP_004893263.1| - 2.2e-61 207.7 0.0 2.5e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|352682739|ref|YP_004893263.1| - 0.003 16.8 0.0 0.0044 16.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GlutR_N PF05201.15 gi|352682740|ref|YP_004893264.1| - 7.8e-26 90.6 0.0 2.3e-25 89.1 0.0 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|352682740|ref|YP_004893264.1| - 3.7e-23 82.1 0.0 8.1e-23 81.0 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|352682740|ref|YP_004893264.1| - 1.6e-11 44.6 0.0 4.3e-11 43.3 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|352682740|ref|YP_004893264.1| - 1.4e-06 28.6 0.0 3.4e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|352682740|ref|YP_004893264.1| - 2.9e-06 26.8 0.0 5.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|352682740|ref|YP_004893264.1| - 7.6e-06 26.2 0.0 1.7e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.6 gi|352682740|ref|YP_004893264.1| - 0.00037 20.4 0.0 0.00065 19.6 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding IlvN PF07991.12 gi|352682740|ref|YP_004893264.1| - 0.0016 18.0 0.0 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|352682740|ref|YP_004893264.1| - 0.0029 18.0 0.3 0.011 16.2 0.0 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|352682740|ref|YP_004893264.1| - 0.0043 17.3 0.1 0.011 16.0 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain ThiF PF00899.21 gi|352682740|ref|YP_004893264.1| - 0.024 14.0 0.6 0.27 10.6 0.3 2.2 2 0 0 2 2 2 0 ThiF family ApbA PF02558.16 gi|352682740|ref|YP_004893264.1| - 0.026 14.2 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|352682740|ref|YP_004893264.1| - 0.031 14.2 0.0 0.079 12.9 0.0 1.7 2 0 0 2 2 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|352682740|ref|YP_004893264.1| - 0.032 13.5 0.0 0.079 12.2 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF364 PF04016.12 gi|352682740|ref|YP_004893264.1| - 0.035 13.7 0.0 0.059 12.9 0.0 1.4 1 0 0 1 1 1 0 Putative heavy-metal chelation 3HCDH_N PF02737.18 gi|352682740|ref|YP_004893264.1| - 0.042 13.7 0.0 0.17 11.7 0.0 2.1 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|352682740|ref|YP_004893264.1| - 0.059 14.2 0.2 0.28 12.0 0.0 2.1 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold KR PF08659.10 gi|352682740|ref|YP_004893264.1| - 0.065 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 KR domain adh_short PF00106.25 gi|352682740|ref|YP_004893264.1| - 0.074 12.5 0.4 1.6 8.2 0.1 2.2 2 0 0 2 2 2 0 short chain dehydrogenase Rossmann-like PF10727.9 gi|352682740|ref|YP_004893264.1| - 0.081 12.8 0.0 0.23 11.3 0.0 1.8 1 0 0 1 1 1 0 Rossmann-like domain Epimerase PF01370.21 gi|352682740|ref|YP_004893264.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Porphobil_deam PF01379.20 gi|352682741|ref|YP_004893265.1| - 4e-64 215.9 0.0 5.3e-64 215.5 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|352682741|ref|YP_004893265.1| - 9.9e-08 32.3 0.2 1.8e-07 31.4 0.2 1.4 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Cob_adeno_trans PF01923.18 gi|352682742|ref|YP_004893266.1| - 4.6e-13 49.6 0.0 6e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Ribosomal_S13 PF00416.22 gi|352682743|ref|YP_004893267.1| - 1e-34 119.7 0.0 1.2e-34 119.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_5 PF14520.6 gi|352682743|ref|YP_004893267.1| - 0.01 16.4 0.1 0.021 15.4 0.1 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain FbpA PF05833.11 gi|352682743|ref|YP_004893267.1| - 0.068 11.9 0.0 0.084 11.6 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|352682744|ref|YP_004893268.1| - 1.5e-15 56.6 0.1 1.5e-15 56.6 0.1 2.0 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|352682744|ref|YP_004893268.1| - 0.0017 19.3 0.9 0.0024 18.7 0.9 1.5 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain TyrRSs_C PF16714.5 gi|352682744|ref|YP_004893268.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain Asparaginase_2 PF01112.18 gi|352682745|ref|YP_004893269.1| - 5.2e-74 249.0 10.3 5.8e-74 248.9 10.3 1.0 1 0 0 1 1 1 1 Asparaginase ArsA_HSP20 PF17886.1 gi|352682746|ref|YP_004893270.1| - 0.017 14.7 0.1 0.022 14.3 0.1 1.2 1 0 0 1 1 1 0 HSP20-like domain found in ArsA DUF3275 PF11679.8 gi|352682746|ref|YP_004893270.1| - 0.08 12.9 0.0 0.12 12.3 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3275) DUF72 PF01904.18 gi|352682748|ref|YP_004893272.1| - 3.6e-28 99.2 0.0 4.5e-28 98.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF5491 PF17595.2 gi|352682748|ref|YP_004893272.1| - 0.061 13.6 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5491) Radical_SAM PF04055.21 gi|352682752|ref|YP_004893276.1| - 3.1e-12 47.2 0.0 4.8e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|352682752|ref|YP_004893276.1| - 7e-08 32.8 0.0 1.2e-07 32.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|352682752|ref|YP_004893276.1| - 0.0023 18.0 0.0 0.0072 16.5 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain RIO1 PF01163.22 gi|352682753|ref|YP_004893277.1| - 7.2e-14 51.8 0.0 9.1e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|352682753|ref|YP_004893277.1| - 1.2e-08 34.6 0.0 2.7e-07 30.2 0.0 2.2 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|352682753|ref|YP_004893277.1| - 1.1e-07 32.1 0.0 0.00019 21.4 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|352682753|ref|YP_004893277.1| - 7.7e-06 25.5 0.0 8.4e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|352682753|ref|YP_004893277.1| - 0.0047 16.2 0.0 0.0072 15.6 0.0 1.4 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|352682753|ref|YP_004893277.1| - 0.01 15.5 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Kinase-like PF14531.6 gi|352682753|ref|YP_004893277.1| - 0.082 12.2 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Kinase-like TrbC PF04956.13 gi|352682755|ref|YP_004893279.1| - 0.05 13.8 5.5 0.9 9.8 0.2 2.1 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF4134 PF13572.6 gi|352682755|ref|YP_004893279.1| - 0.2 12.0 7.0 5.2 7.4 0.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4134) B12D PF06522.11 gi|352682755|ref|YP_004893279.1| - 0.74 9.7 2.0 2.3 8.1 0.7 2.0 2 0 0 2 2 2 0 NADH-ubiquinone reductase complex 1 MLRQ subunit DUF202 PF02656.15 gi|352682755|ref|YP_004893279.1| - 3.1 8.3 6.1 3.2 8.2 4.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2892 PF11127.8 gi|352682755|ref|YP_004893279.1| - 7.8 6.6 8.1 18 5.4 2.3 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2892) Radical_SAM PF04055.21 gi|352682756|ref|YP_004893280.1| - 5e-15 56.3 0.0 1.9e-14 54.4 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|352682756|ref|YP_004893280.1| - 0.00021 21.4 0.0 0.00039 20.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|352682756|ref|YP_004893280.1| - 0.00077 19.7 0.0 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Hydrolase_6 PF13344.6 gi|352682756|ref|YP_004893280.1| - 0.022 14.9 0.0 0.057 13.5 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase ssDBP_DBD PF18361.1 gi|352682757|ref|YP_004893281.1| - 2e-94 313.0 1.5 2.5e-94 312.7 1.5 1.1 1 0 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain APC_N_CC PF16689.5 gi|352682757|ref|YP_004893281.1| - 0.00035 20.6 2.4 0.00071 19.6 2.4 1.5 1 0 0 1 1 1 1 Coiled-coil N-terminus of APC, dimerisation domain HALZ PF02183.18 gi|352682757|ref|YP_004893281.1| - 0.0041 17.3 6.4 0.0095 16.1 6.4 1.7 1 0 0 1 1 1 1 Homeobox associated leucine zipper bZIP_Maf PF03131.17 gi|352682757|ref|YP_004893281.1| - 0.0077 16.7 1.5 0.014 15.9 1.5 1.4 1 0 0 1 1 1 1 bZIP Maf transcription factor Apolipoprotein PF01442.18 gi|352682757|ref|YP_004893281.1| - 0.0087 16.0 1.5 0.25 11.2 3.0 2.0 2 0 0 2 2 2 1 Apolipoprotein A1/A4/E domain bZIP_1 PF00170.21 gi|352682757|ref|YP_004893281.1| - 0.0095 16.0 6.2 0.016 15.3 6.2 1.4 1 0 0 1 1 1 1 bZIP transcription factor Cnn_1N PF07989.11 gi|352682757|ref|YP_004893281.1| - 0.01 16.0 1.3 0.023 14.8 1.3 1.5 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 APG6_N PF17675.1 gi|352682757|ref|YP_004893281.1| - 0.014 15.9 1.9 0.025 15.1 1.9 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region CortBP2 PF09727.9 gi|352682757|ref|YP_004893281.1| - 0.024 14.6 3.8 0.035 14.0 3.8 1.2 1 0 0 1 1 1 0 Cortactin-binding protein-2 ADIP PF11559.8 gi|352682757|ref|YP_004893281.1| - 0.027 14.5 2.6 0.039 14.0 2.6 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding ZapB PF06005.12 gi|352682757|ref|YP_004893281.1| - 0.071 13.6 7.2 0.14 12.6 7.2 1.5 1 0 0 1 1 1 0 Cell division protein ZapB DUF1640 PF07798.11 gi|352682757|ref|YP_004893281.1| - 0.077 13.0 2.3 0.15 12.1 2.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) Lipoprotein_20 PF13942.6 gi|352682757|ref|YP_004893281.1| - 0.29 11.0 6.0 0.63 9.9 6.0 1.5 1 1 0 1 1 1 0 YfhG lipoprotein DUF5320 PF17253.2 gi|352682757|ref|YP_004893281.1| - 0.33 12.0 3.3 0.38 11.9 0.3 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Spc24 PF08286.11 gi|352682757|ref|YP_004893281.1| - 0.37 11.0 3.0 0.63 10.3 3.0 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Myc-LZ PF02344.15 gi|352682757|ref|YP_004893281.1| - 0.5 10.5 11.5 0.12 12.5 7.2 2.1 1 1 1 2 2 2 0 Myc leucine zipper domain DivIC PF04977.15 gi|352682757|ref|YP_004893281.1| - 0.62 9.9 5.1 1.5 8.7 5.1 1.6 1 0 0 1 1 1 0 Septum formation initiator NurA PF09376.10 gi|352682758|ref|YP_004893282.1| - 6.7e-06 26.0 2.8 0.0061 16.3 2.8 2.6 1 1 0 1 1 1 1 NurA domain CorA PF01544.18 gi|352682759|ref|YP_004893283.1| - 0.13 11.5 0.3 0.17 11.2 0.3 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2791 PF10923.8 gi|352682760|ref|YP_004893284.1| - 0.00096 18.1 0.2 0.0057 15.6 0.0 2.2 1 1 1 2 2 2 1 P-loop Domain of unknown function (DUF2791) AAA_30 PF13604.6 gi|352682760|ref|YP_004893284.1| - 0.0044 16.8 1.6 0.013 15.2 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA PF00004.29 gi|352682760|ref|YP_004893284.1| - 0.037 14.5 0.0 0.12 12.8 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) eRF1_2 PF03464.15 gi|352682760|ref|YP_004893284.1| - 0.04 14.2 0.4 0.16 12.3 0.0 2.1 2 0 0 2 2 2 0 eRF1 domain 2 B-block_TFIIIC PF04182.12 gi|352682760|ref|YP_004893284.1| - 0.041 14.0 0.1 1.1 9.5 0.0 2.8 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|352682760|ref|YP_004893284.1| - 0.11 12.4 0.1 0.62 10.0 0.0 2.2 2 0 0 2 2 2 0 MarR family AAA_16 PF13191.6 gi|352682760|ref|YP_004893284.1| - 0.22 11.9 2.6 0.53 10.6 0.1 2.6 2 1 0 2 2 2 0 AAA ATPase domain Sulfolobus_pRN PF05584.11 gi|352682760|ref|YP_004893284.1| - 0.47 10.5 0.0 0.47 10.5 0.0 2.6 3 0 0 3 3 3 0 Sulfolobus plasmid regulatory protein DUF1128 PF06569.11 gi|352682760|ref|YP_004893284.1| - 1.7 8.7 5.4 16 5.6 0.0 4.0 4 0 0 4 4 4 0 Protein of unknown function (DUF1128) EMP24_GP25L PF01105.24 gi|352682760|ref|YP_004893284.1| - 2.4 8.1 4.3 0.83 9.6 1.2 1.7 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Acetyltransf_1 PF00583.25 gi|352682761|ref|YP_004893285.1| - 2.5e-20 72.8 0.1 3.1e-20 72.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|352682761|ref|YP_004893285.1| - 6.1e-14 52.1 0.0 7.3e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|352682761|ref|YP_004893285.1| - 4.2e-13 49.5 0.0 6.2e-13 49.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|352682761|ref|YP_004893285.1| - 8.1e-08 32.1 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|352682761|ref|YP_004893285.1| - 1.3e-06 28.6 0.1 1.6e-06 28.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|352682761|ref|YP_004893285.1| - 3.5e-06 26.8 0.0 4.9e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|352682761|ref|YP_004893285.1| - 2e-05 25.3 0.0 2.6e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|352682761|ref|YP_004893285.1| - 0.0034 17.1 0.0 0.0045 16.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_18 PF18014.1 gi|352682761|ref|YP_004893285.1| - 0.015 15.1 0.0 0.038 13.8 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|352682761|ref|YP_004893285.1| - 0.04 13.5 0.1 0.073 12.6 0.1 1.4 1 1 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|352682761|ref|YP_004893285.1| - 0.067 13.3 0.0 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|352682761|ref|YP_004893285.1| - 0.081 13.0 0.0 0.1 12.7 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA_31 PF13614.6 gi|352682762|ref|YP_004893286.1| - 7.7e-05 22.7 0.1 0.074 13.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|352682762|ref|YP_004893286.1| - 0.004 17.2 2.2 0.019 15.0 2.2 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|352682762|ref|YP_004893286.1| - 0.028 13.9 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ Metallophos_2 PF12850.7 gi|352682763|ref|YP_004893287.1| - 1e-09 38.8 0.0 1.3e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|352682763|ref|YP_004893287.1| - 5.7e-07 30.2 0.2 1.7e-06 28.7 0.2 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_45 PF14947.6 gi|352682763|ref|YP_004893287.1| - 0.12 12.3 0.4 0.29 11.2 0.2 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix CLP1_P PF16575.5 gi|352682764|ref|YP_004893288.1| - 4e-33 114.8 0.0 5.7e-33 114.3 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|352682764|ref|YP_004893288.1| - 7e-06 26.1 0.0 1e-05 25.6 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|352682764|ref|YP_004893288.1| - 0.0024 17.4 0.1 0.0048 16.4 0.0 1.4 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase DNA_primase_lrg PF04104.14 gi|352682765|ref|YP_004893289.1| - 2.2e-32 112.5 0.0 4.4e-32 111.5 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit AGOG PF09171.10 gi|352682766|ref|YP_004893290.1| - 1.6e-79 266.8 0.0 1.9e-79 266.5 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase DUF3046 PF11248.8 gi|352682766|ref|YP_004893290.1| - 0.087 13.2 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3046) PhnA PF03831.14 gi|352682767|ref|YP_004893291.1| - 0.0095 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 PhnA domain DUF126 PF01989.16 gi|352682768|ref|YP_004893292.1| - 3.3e-23 81.3 0.2 4.6e-23 80.8 0.2 1.2 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|352682769|ref|YP_004893293.1| - 3.1e-87 292.9 0.0 3.5e-87 292.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Glyco_trans_4_4 PF13579.6 gi|352682769|ref|YP_004893293.1| - 0.065 13.7 0.1 0.61 10.5 0.1 2.5 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain UbiD PF01977.16 gi|352682770|ref|YP_004893294.1| - 3.7e-84 282.9 0.0 4.6e-84 282.7 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RMI2 PF16100.5 gi|352682770|ref|YP_004893294.1| - 0.0024 17.7 0.1 0.0043 16.9 0.1 1.3 1 0 0 1 1 1 1 RecQ-mediated genome instability protein 2 zinc_ribbon_4 PF13717.6 gi|352682771|ref|YP_004893295.1| - 2.9e-07 30.3 1.3 0.00099 19.0 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|352682771|ref|YP_004893295.1| - 2.4e-06 27.5 1.5 0.023 14.8 0.1 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|352682771|ref|YP_004893295.1| - 5.6e-05 22.4 2.7 0.098 12.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|352682771|ref|YP_004893295.1| - 0.00021 21.3 1.0 0.47 10.5 0.1 2.1 1 1 2 3 3 3 3 CpXC protein zinc_ribbon_5 PF13719.6 gi|352682771|ref|YP_004893295.1| - 0.00023 20.9 4.6 0.006 16.3 0.9 2.2 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|352682771|ref|YP_004893295.1| - 0.0003 20.6 0.1 0.00061 19.6 0.1 1.5 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|352682771|ref|YP_004893295.1| - 0.0003 20.8 1.1 0.00074 19.6 1.1 1.6 1 1 0 1 1 1 1 Zinc ribbon domain zf_UBZ PF18439.1 gi|352682771|ref|YP_004893295.1| - 0.00086 18.9 0.8 0.73 9.5 0.0 2.4 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Lar_restr_allev PF14354.6 gi|352682771|ref|YP_004893295.1| - 0.0016 18.8 1.0 0.0019 18.5 1.0 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.12 gi|352682771|ref|YP_004893295.1| - 0.0022 17.9 0.7 0.57 10.2 0.0 2.3 2 0 0 2 2 2 1 PhnA Zinc-Ribbon IBR PF01485.21 gi|352682771|ref|YP_004893295.1| - 0.0026 18.0 1.0 0.0047 17.1 1.0 1.4 1 1 0 1 1 1 1 IBR domain, a half RING-finger domain Zn_ribbon_17 PF17120.5 gi|352682771|ref|YP_004893295.1| - 0.0028 17.3 0.2 0.0038 16.8 0.2 1.2 1 0 0 1 1 1 1 Zinc-ribbon, C4HC2 type zf_C2H2_10 PF18414.1 gi|352682771|ref|YP_004893295.1| - 0.0032 17.0 7.2 0.021 14.4 0.6 2.2 2 0 0 2 2 2 1 C2H2 type zinc-finger HypA PF01155.19 gi|352682771|ref|YP_004893295.1| - 0.0035 17.3 0.1 0.0046 16.9 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYDLN_acid PF09538.10 gi|352682771|ref|YP_004893295.1| - 0.0042 17.7 1.0 0.48 11.1 1.0 2.1 1 1 0 1 1 1 1 Protein of unknown function (FYDLN_acid) Mu-like_Com PF10122.9 gi|352682771|ref|YP_004893295.1| - 0.0052 16.2 0.2 1 8.9 0.0 2.2 2 0 0 2 2 2 1 Mu-like prophage protein Com zf-IS66 PF13005.7 gi|352682771|ref|YP_004893295.1| - 0.0053 17.1 0.2 0.54 10.7 0.0 2.3 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 DZR PF12773.7 gi|352682771|ref|YP_004893295.1| - 0.0062 16.5 0.3 0.015 15.3 0.3 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|352682771|ref|YP_004893295.1| - 0.0073 16.0 5.4 1 9.2 0.7 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF4379 PF14311.6 gi|352682771|ref|YP_004893295.1| - 0.011 16.1 1.6 0.019 15.3 1.6 1.6 1 1 0 1 1 1 0 Probable Zinc-ribbon domain DUF983 PF06170.12 gi|352682771|ref|YP_004893295.1| - 0.016 15.6 0.3 0.47 10.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-NADH-PPase PF09297.11 gi|352682771|ref|YP_004893295.1| - 0.018 14.7 0.5 2.3 7.9 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-RING_2 PF13639.6 gi|352682771|ref|YP_004893295.1| - 0.019 15.3 0.3 0.026 14.9 0.3 1.2 1 0 0 1 1 1 0 Ring finger domain Trm112p PF03966.16 gi|352682771|ref|YP_004893295.1| - 0.021 15.4 0.2 8.8 7.0 0.0 2.2 2 0 0 2 2 2 0 Trm112p-like protein DUF35_N PF12172.8 gi|352682771|ref|YP_004893295.1| - 0.026 14.4 1.3 0.89 9.5 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Elf1 PF05129.13 gi|352682771|ref|YP_004893295.1| - 0.03 14.3 0.2 0.045 13.8 0.1 1.4 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like T4_baseplate PF12322.8 gi|352682771|ref|YP_004893295.1| - 0.032 13.7 0.3 1.6 8.1 0.1 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein TF_Zn_Ribbon PF08271.12 gi|352682771|ref|YP_004893295.1| - 0.034 13.7 3.6 0.34 10.5 3.2 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Acetone_carb_G PF08882.11 gi|352682771|ref|YP_004893295.1| - 0.037 14.2 1.0 0.16 12.1 0.2 2.0 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit ADK_lid PF05191.14 gi|352682771|ref|YP_004893295.1| - 0.037 14.0 0.4 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid DUF1610 PF07754.11 gi|352682771|ref|YP_004893295.1| - 0.046 13.7 3.7 3.6 7.6 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) YhfH PF14149.6 gi|352682771|ref|YP_004893295.1| - 0.049 13.6 0.6 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein zf-H2C2_2 PF13465.6 gi|352682771|ref|YP_004893295.1| - 0.053 14.0 3.5 3.7 8.2 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Cys_rich_CPXG PF14255.6 gi|352682771|ref|YP_004893295.1| - 0.056 13.3 1.8 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-tcix PF14952.6 gi|352682771|ref|YP_004893295.1| - 0.059 13.0 4.2 1.8 8.2 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TFIIS_C PF01096.18 gi|352682771|ref|YP_004893295.1| - 0.063 13.1 2.8 2.5 8.0 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C4_Topoisom PF01396.19 gi|352682771|ref|YP_004893295.1| - 0.065 13.0 2.8 4 7.3 0.3 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|352682771|ref|YP_004893295.1| - 0.082 12.8 1.2 3 7.9 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|352682771|ref|YP_004893295.1| - 0.083 12.9 4.9 2.5 8.1 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-C2H2_12 PF18112.1 gi|352682771|ref|YP_004893295.1| - 0.14 12.6 4.3 2.9 8.5 0.8 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain A2L_zn_ribbon PF08792.10 gi|352682771|ref|YP_004893295.1| - 0.15 11.8 3.7 3.5 7.4 0.4 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|352682771|ref|YP_004893295.1| - 0.21 11.5 2.4 12 5.8 0.1 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|352682771|ref|YP_004893295.1| - 0.35 11.4 4.1 11 6.7 0.7 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Mss51 PF13824.6 gi|352682771|ref|YP_004893295.1| - 0.58 10.3 4.7 4.4 7.5 0.3 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Anti-TRAP PF15777.5 gi|352682771|ref|YP_004893295.1| - 0.61 10.1 2.9 2.2 8.3 2.4 1.9 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-ACC PF17848.1 gi|352682771|ref|YP_004893295.1| - 0.61 10.2 5.2 3.1 8.0 0.6 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-TFIIB PF13453.6 gi|352682771|ref|YP_004893295.1| - 0.74 9.2 4.4 11 5.5 4.7 2.1 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_9 PF14369.6 gi|352682771|ref|YP_004893295.1| - 1 9.7 5.2 9 6.7 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon HSP20 PF00011.21 gi|352682772|ref|YP_004893296.1| - 1.9e-08 34.4 0.0 2.5e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|352682772|ref|YP_004893296.1| - 1.2e-06 28.0 0.0 6e-06 25.7 0.0 2.1 1 1 0 1 1 1 1 HSP20-like domain found in ArsA tRNA_int_endo PF01974.17 gi|352682773|ref|YP_004893297.1| - 3.5e-25 87.9 0.0 8.4e-25 86.7 0.0 1.6 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|352682773|ref|YP_004893297.1| - 1e-19 69.9 2.0 1.6e-19 69.3 2.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|352682773|ref|YP_004893297.1| - 0.0018 18.4 0.2 0.0053 16.9 0.1 1.9 2 0 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term Nup35_RRM_2 PF14605.6 gi|352682773|ref|YP_004893297.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Nup53/35/40-type RNA recognition motif Molydop_binding PF01568.21 gi|352682774|ref|YP_004893298.1| - 0.0013 18.7 0.3 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain CDC48_N PF02359.18 gi|352682774|ref|YP_004893298.1| - 0.033 14.4 0.3 1.5 9.1 0.0 2.1 1 1 1 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain HGTP_anticodon PF03129.20 gi|352682775|ref|YP_004893299.1| - 2.3e-16 59.7 0.0 5.6e-16 58.5 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|352682775|ref|YP_004893299.1| - 8.5e-06 25.9 0.0 3.6e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Thioredoxin_3 PF13192.6 gi|352682775|ref|YP_004893299.1| - 0.016 15.2 0.0 0.059 13.4 0.0 2.0 1 0 0 1 1 1 0 Thioredoxin domain Zn-ribbon_8 PF09723.10 gi|352682775|ref|YP_004893299.1| - 1 9.5 2.9 18 5.5 0.0 2.6 3 0 0 3 3 3 0 Zinc ribbon domain Arginase PF00491.21 gi|352682776|ref|YP_004893300.1| - 7e-37 127.4 0.0 8.3e-37 127.2 0.0 1.0 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.13 gi|352682777|ref|YP_004893301.1| - 7.3e-05 22.4 4.7 0.00019 21.1 4.7 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.26 gi|352682777|ref|YP_004893301.1| - 0.0016 18.8 2.7 0.082 13.4 0.2 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|352682777|ref|YP_004893301.1| - 0.0033 17.8 0.2 3.2 8.3 0.1 2.1 2 0 0 2 2 2 2 Zinc-finger double domain DZR PF12773.7 gi|352682777|ref|YP_004893301.1| - 0.0039 17.2 0.1 0.0058 16.6 0.1 1.3 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|352682777|ref|YP_004893301.1| - 0.0052 16.9 0.3 0.0074 16.4 0.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352682777|ref|YP_004893301.1| - 0.0055 16.6 0.5 3.2 7.8 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF2072 PF09845.9 gi|352682777|ref|YP_004893301.1| - 0.0058 16.9 0.1 0.0069 16.6 0.1 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein zf-C2H2_4 PF13894.6 gi|352682777|ref|YP_004893301.1| - 0.011 16.6 1.4 1.1 10.3 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-CSL PF05207.13 gi|352682777|ref|YP_004893301.1| - 0.033 13.9 0.3 0.044 13.5 0.3 1.2 1 0 0 1 1 1 0 CSL zinc finger HypA PF01155.19 gi|352682777|ref|YP_004893301.1| - 0.04 13.9 0.1 0.042 13.9 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|352682777|ref|YP_004893301.1| - 0.056 13.3 0.3 0.079 12.9 0.3 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 gi|352682777|ref|YP_004893301.1| - 0.11 12.1 1.6 0.63 9.7 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-AN1 PF01428.16 gi|352682777|ref|YP_004893301.1| - 0.49 10.6 3.0 8.5 6.6 0.2 2.1 1 1 1 2 2 2 0 AN1-like Zinc finger zf-BED PF02892.15 gi|352682777|ref|YP_004893301.1| - 1.6 8.8 4.8 2.7 8.1 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger CTP_transf_like PF01467.26 gi|352682778|ref|YP_004893302.1| - 1.7e-09 38.0 0.0 3.2e-09 37.1 0.0 1.5 2 0 0 2 2 2 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|352682778|ref|YP_004893302.1| - 0.1 12.1 0.0 9.2 5.7 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase FAD_syn PF06574.12 gi|352682778|ref|YP_004893302.1| - 0.11 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 FAD synthetase HIGH_NTase1 PF05636.11 gi|352682778|ref|YP_004893302.1| - 0.27 10.4 0.0 1.9 7.6 0.0 1.9 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase CBS PF00571.28 gi|352682779|ref|YP_004893303.1| - 1.7e-23 82.8 2.9 5.4e-13 49.2 0.1 2.1 2 0 0 2 2 2 2 CBS domain HTH_17 PF12728.7 gi|352682780|ref|YP_004893304.1| - 1.7e-15 56.9 0.3 9.4e-15 54.5 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|352682780|ref|YP_004893304.1| - 3.1e-08 33.6 0.2 5.9e-08 32.7 0.2 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 gi|352682780|ref|YP_004893304.1| - 2.4e-07 30.4 0.0 5.8e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein AbiEi_4 PF13338.6 gi|352682780|ref|YP_004893304.1| - 0.0012 18.9 0.1 0.0072 16.5 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin P22_Cro PF14549.6 gi|352682780|ref|YP_004893304.1| - 0.0048 16.7 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 DNA-binding transcriptional regulator Cro Sigma70_r4_2 PF08281.12 gi|352682780|ref|YP_004893304.1| - 0.0056 16.3 0.0 0.014 15.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 YdaS_antitoxin PF15943.5 gi|352682780|ref|YP_004893304.1| - 0.026 14.4 0.0 0.068 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|352682780|ref|YP_004893304.1| - 0.029 14.1 0.0 0.086 12.7 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Terminase_5 PF06056.12 gi|352682780|ref|YP_004893304.1| - 0.075 12.9 0.3 0.15 11.9 0.3 1.7 1 1 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) MerR_2 PF13591.6 gi|352682780|ref|YP_004893304.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 MerR HTH family regulatory protein AA_permease_2 PF13520.6 gi|352682781|ref|YP_004893305.1| - 9.4e-41 140.0 49.3 9.4e-41 140.0 49.3 2.6 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|352682781|ref|YP_004893305.1| - 1.6e-29 102.9 63.2 2.1e-29 102.4 59.7 2.4 1 1 0 1 1 1 1 Amino acid permease DUF3487 PF11990.8 gi|352682781|ref|YP_004893305.1| - 0.012 15.5 0.5 0.012 15.5 0.5 4.5 5 1 1 6 6 6 0 Protein of unknown function (DUF3487) MS_channel PF00924.18 gi|352682782|ref|YP_004893306.1| - 1.4e-11 44.3 0.8 1.4e-11 44.3 0.8 1.5 1 1 1 2 2 2 1 Mechanosensitive ion channel DUF2614 PF11023.8 gi|352682782|ref|YP_004893306.1| - 0.45 10.6 3.3 0.88 9.7 3.3 1.5 1 0 0 1 1 1 0 Zinc-ribbon containing domain TrkA_C PF02080.21 gi|352682783|ref|YP_004893307.1| - 5.6e-07 29.3 0.1 2.5e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain TrkA_N PF02254.18 gi|352682783|ref|YP_004893307.1| - 3.5e-05 24.0 0.0 5.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 TrkA-N domain DUF4258 PF14076.6 gi|352682785|ref|YP_004893309.1| - 0.047 14.1 0.1 12 6.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) Peptidase_M54 PF07998.11 gi|352682786|ref|YP_004893310.1| - 4.4e-26 92.1 0.1 6.3e-26 91.6 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|352682786|ref|YP_004893310.1| - 0.00082 19.2 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|352682786|ref|YP_004893310.1| - 0.0045 16.0 0.1 0.006 15.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.6 gi|352682786|ref|YP_004893310.1| - 0.0062 17.1 0.0 0.007 16.9 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|352682786|ref|YP_004893310.1| - 0.013 14.1 0.8 0.02 13.5 0.8 1.2 1 0 0 1 1 1 0 Putative peptidase family DUF4953 PF16313.5 gi|352682786|ref|YP_004893310.1| - 0.029 13.6 0.2 0.039 13.2 0.2 1.1 1 0 0 1 1 1 0 Met-zincin Reprolysin_4 PF13583.6 gi|352682786|ref|YP_004893310.1| - 0.03 13.9 0.0 0.045 13.4 0.0 1.3 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|352682786|ref|YP_004893310.1| - 0.032 14.4 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Peptidase_M43 PF05572.13 gi|352682786|ref|YP_004893310.1| - 0.065 13.2 0.1 0.087 12.7 0.1 1.1 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Zincin_1 PF06262.11 gi|352682786|ref|YP_004893310.1| - 0.086 13.0 0.2 0.15 12.2 0.2 1.3 1 0 0 1 1 1 0 Zincin-like metallopeptidase GDPD PF03009.17 gi|352682787|ref|YP_004893311.1| - 5.2e-32 111.6 0.0 4.2e-30 105.4 0.0 2.2 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|352682787|ref|YP_004893311.1| - 5e-05 23.6 1.7 0.00055 20.3 1.7 2.2 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family DUF5609 PF18429.1 gi|352682787|ref|YP_004893311.1| - 0.027 14.3 0.1 0.061 13.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5609) MobB PF03205.14 gi|352682788|ref|YP_004893312.1| - 4.4e-20 71.9 0.0 8.7e-20 71.0 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|352682788|ref|YP_004893312.1| - 0.0028 17.7 0.0 0.003 17.6 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.15 gi|352682788|ref|YP_004893312.1| - 0.0056 16.6 0.0 0.0088 16.0 0.0 1.3 1 0 0 1 1 1 1 NTPase AAA_14 PF13173.6 gi|352682788|ref|YP_004893312.1| - 0.055 13.5 0.1 0.094 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|352682788|ref|YP_004893312.1| - 0.17 11.2 0.0 0.31 10.4 0.0 1.4 2 0 0 2 2 2 0 KaiC Amidoligase_2 PF12224.8 gi|352682788|ref|YP_004893312.1| - 0.22 11.1 0.0 0.31 10.6 0.0 1.1 1 0 0 1 1 1 0 Putative amidoligase enzyme MoeA_N PF03453.17 gi|352682789|ref|YP_004893313.1| - 6.7e-27 94.2 0.0 1e-26 93.5 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|352682789|ref|YP_004893313.1| - 1.6e-11 44.1 0.0 5.3e-11 42.4 0.0 1.8 1 1 0 1 1 1 1 Probable molybdopterin binding domain Fibrillarin PF01269.17 gi|352682790|ref|YP_004893314.1| - 9e-101 335.7 0.0 1e-100 335.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|352682790|ref|YP_004893314.1| - 3.7e-06 26.8 0.0 5.2e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|352682790|ref|YP_004893314.1| - 0.18 11.4 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Nop PF01798.18 gi|352682791|ref|YP_004893315.1| - 1.9e-70 237.0 0.0 2.5e-70 236.5 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Focal_AT PF03623.13 gi|352682791|ref|YP_004893315.1| - 0.0031 17.5 0.0 0.013 15.5 0.0 2.1 1 1 0 1 1 1 1 Focal adhesion targeting region DUF4974 PF16344.5 gi|352682791|ref|YP_004893315.1| - 0.12 12.4 0.1 8.2 6.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4974) GatB_N PF02934.15 gi|352682792|ref|YP_004893316.1| - 3.7e-65 220.0 0.0 6.3e-65 219.3 0.0 1.4 1 1 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|352682792|ref|YP_004893316.1| - 2.9e-10 40.3 0.0 7.6e-10 38.9 0.0 1.8 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.18 gi|352682792|ref|YP_004893316.1| - 6.5e-07 29.3 1.2 3.2e-06 27.1 0.6 2.4 2 1 0 2 2 2 1 GatB domain PNPase PF03726.14 gi|352682792|ref|YP_004893316.1| - 0.0065 16.9 2.6 0.64 10.6 1.0 2.9 2 0 0 2 2 2 2 Polyribonucleotide nucleotidyltransferase, RNA binding domain RrnaAD PF00398.20 gi|352682793|ref|YP_004893317.1| - 5e-43 147.1 0.0 6.5e-43 146.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|352682793|ref|YP_004893317.1| - 3.6e-07 30.8 0.0 6.1e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|352682793|ref|YP_004893317.1| - 0.00028 21.5 0.0 0.00059 20.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352682793|ref|YP_004893317.1| - 0.0025 17.7 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|352682793|ref|YP_004893317.1| - 0.0027 17.2 0.0 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Met_10 PF02475.16 gi|352682793|ref|YP_004893317.1| - 0.004 16.9 0.0 0.0064 16.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein MetW PF07021.12 gi|352682793|ref|YP_004893317.1| - 0.015 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|352682793|ref|YP_004893317.1| - 0.022 14.5 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|352682793|ref|YP_004893317.1| - 0.031 14.0 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|352682793|ref|YP_004893317.1| - 0.18 10.7 0.0 0.26 10.2 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_18 PF12847.7 gi|352682793|ref|YP_004893317.1| - 0.24 11.3 0.0 0.35 10.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Lactamase_B_2 PF12706.7 gi|352682794|ref|YP_004893318.1| - 4.2e-32 111.3 0.0 5e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|352682794|ref|YP_004893318.1| - 9.1e-10 38.9 0.7 1.3e-08 35.1 0.7 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|352682794|ref|YP_004893318.1| - 0.0053 16.7 0.0 0.045 13.6 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Methyltransf_25 PF13649.6 gi|352682795|ref|YP_004893319.1| - 8.4e-09 36.0 0.0 1.2e-08 35.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|352682795|ref|YP_004893319.1| - 5.3e-08 33.4 0.0 7.7e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352682795|ref|YP_004893319.1| - 0.001 19.8 0.0 0.0021 18.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|352682795|ref|YP_004893319.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352682795|ref|YP_004893319.1| - 0.087 12.7 0.0 0.097 12.5 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain tRNA-synt_1b PF00579.25 gi|352682796|ref|YP_004893320.1| - 4e-37 128.1 0.0 6.7e-37 127.4 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF371 PF04027.13 gi|352682797|ref|YP_004893321.1| - 6.4e-40 136.2 0.0 7.3e-40 136.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) CTP_transf_1 PF01148.20 gi|352682798|ref|YP_004893322.1| - 0.00029 20.7 6.0 0.00056 19.8 6.0 1.6 1 1 0 1 1 1 1 Cytidylyltransferase family 7TM_GPCR_Srab PF10292.9 gi|352682798|ref|YP_004893322.1| - 0.022 13.7 0.1 0.038 12.9 0.1 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR receptor class ab chemoreceptor DUF3784 PF12650.7 gi|352682798|ref|YP_004893322.1| - 2.1 8.6 13.4 0.15 12.3 1.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF3784) PIN_6 PF17146.4 gi|352682799|ref|YP_004893323.1| - 1.1e-06 29.1 2.7 1.1e-05 25.9 2.7 2.1 1 1 0 1 1 1 1 PIN domain of ribonuclease PIN PF01850.21 gi|352682799|ref|YP_004893323.1| - 0.0036 17.8 1.1 0.01 16.3 0.4 1.8 1 1 1 2 2 2 1 PIN domain PIN_9 PF18477.1 gi|352682799|ref|YP_004893323.1| - 0.0041 17.4 0.8 0.0063 16.8 0.8 1.3 1 1 0 1 1 1 1 PIN like domain PIN_5 PF08745.11 gi|352682799|ref|YP_004893323.1| - 0.0093 15.4 0.3 0.034 13.5 0.1 1.7 2 0 0 2 2 2 1 PINc domain ribonuclease PIN_2 PF10130.9 gi|352682799|ref|YP_004893323.1| - 0.043 14.0 0.1 0.054 13.7 0.1 1.4 1 1 0 1 1 1 0 PIN domain DUF4411 PF14367.6 gi|352682799|ref|YP_004893323.1| - 0.1 12.5 0.0 0.79 9.6 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) DUF3723 PF12520.8 gi|352682799|ref|YP_004893323.1| - 0.17 10.6 0.0 0.2 10.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3723) NAD_kinase PF01513.21 gi|352682800|ref|YP_004893324.1| - 7.6e-20 71.3 0.2 4.8e-19 68.6 0.2 1.9 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|352682800|ref|YP_004893324.1| - 0.024 14.3 0.0 0.048 13.3 0.0 1.6 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain Mut7-C PF01927.16 gi|352682801|ref|YP_004893325.1| - 4.7e-28 98.1 0.2 5.9e-28 97.8 0.2 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain ADK_lid PF05191.14 gi|352682801|ref|YP_004893325.1| - 0.0026 17.7 0.3 0.24 11.4 0.1 2.5 2 0 0 2 2 2 1 Adenylate kinase, active site lid zf-ribbon_3 PF13248.6 gi|352682801|ref|YP_004893325.1| - 0.0041 16.5 3.4 1.5 8.3 0.7 2.7 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|352682801|ref|YP_004893325.1| - 0.016 14.7 1.6 1.2 8.7 0.0 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|352682801|ref|YP_004893325.1| - 0.058 13.4 4.4 1.5 8.9 1.0 2.5 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|352682801|ref|YP_004893325.1| - 0.071 13.0 3.7 6.1 6.9 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|352682801|ref|YP_004893325.1| - 0.11 12.3 0.7 14 5.6 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_2 PF13240.6 gi|352682801|ref|YP_004893325.1| - 0.14 11.9 3.6 5.4 6.9 0.4 2.7 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|352682801|ref|YP_004893325.1| - 0.27 11.0 3.8 3.9 7.3 1.3 2.6 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein FbpA PF05833.11 gi|352682802|ref|YP_004893326.1| - 1e-29 103.6 2.8 2.9e-29 102.1 2.8 1.6 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|352682802|ref|YP_004893326.1| - 4.5e-21 75.5 0.0 7.9e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain UPF0449 PF15136.6 gi|352682802|ref|YP_004893326.1| - 0.00019 21.8 7.6 0.0012 19.3 0.7 2.7 2 1 0 2 2 2 1 Uncharacterised protein family UPF0449 NFACT-R_2 PF18297.1 gi|352682802|ref|YP_004893326.1| - 0.0013 18.9 0.0 0.0036 17.5 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain DUF5082 PF16888.5 gi|352682802|ref|YP_004893326.1| - 0.01 16.1 5.7 1.4 9.2 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) Uso1_p115_C PF04871.13 gi|352682802|ref|YP_004893326.1| - 0.013 15.8 9.9 0.039 14.3 1.6 2.3 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Snf7 PF03357.21 gi|352682802|ref|YP_004893326.1| - 0.02 14.5 9.9 0.14 11.7 4.5 2.4 2 0 0 2 2 2 0 Snf7 Syntaxin-6_N PF09177.11 gi|352682802|ref|YP_004893326.1| - 0.035 14.7 11.6 0.13 12.8 0.4 2.9 2 1 1 3 3 3 0 Syntaxin 6, N-terminal FUSC PF04632.12 gi|352682802|ref|YP_004893326.1| - 0.039 12.5 1.2 0.1 11.1 1.2 1.5 1 1 0 1 1 1 0 Fusaric acid resistance protein family GAS PF13851.6 gi|352682802|ref|YP_004893326.1| - 0.043 13.2 15.9 0.46 9.8 4.9 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF3450 PF11932.8 gi|352682802|ref|YP_004893326.1| - 0.061 12.6 9.5 0.77 9.0 2.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) PspA_IM30 PF04012.12 gi|352682802|ref|YP_004893326.1| - 0.067 12.8 13.6 1.1 8.7 13.6 2.3 1 1 0 1 1 1 0 PspA/IM30 family MCU PF04678.13 gi|352682802|ref|YP_004893326.1| - 0.067 13.3 3.4 1.2 9.2 0.8 2.3 2 0 0 2 2 2 0 Mitochondrial calcium uniporter Nsp1_C PF05064.13 gi|352682802|ref|YP_004893326.1| - 0.089 12.6 5.0 3.6 7.4 0.3 2.5 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF4254 PF14063.6 gi|352682802|ref|YP_004893326.1| - 0.091 12.6 3.4 1.7 8.4 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4254) Ax_dynein_light PF10211.9 gi|352682802|ref|YP_004893326.1| - 0.093 12.7 11.6 1.5 8.7 2.8 3.0 3 0 0 3 3 3 0 Axonemal dynein light chain BLOC1_2 PF10046.9 gi|352682802|ref|YP_004893326.1| - 0.11 12.9 11.3 1.2 9.5 2.7 2.7 2 1 1 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MscS_porin PF12795.7 gi|352682802|ref|YP_004893326.1| - 0.12 11.9 6.9 0.43 10.1 0.7 2.2 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain CREPT PF16566.5 gi|352682802|ref|YP_004893326.1| - 0.13 12.5 7.4 3.3 7.9 1.3 2.3 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour SesA PF17107.5 gi|352682802|ref|YP_004893326.1| - 0.18 12.0 3.2 0.29 11.3 0.2 2.3 2 0 0 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases TPR_6 PF13174.6 gi|352682802|ref|YP_004893326.1| - 0.2 12.4 0.9 6.2 7.7 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_13 PF13166.6 gi|352682802|ref|YP_004893326.1| - 0.2 10.2 9.9 0.28 9.8 9.9 1.1 1 0 0 1 1 1 0 AAA domain STAT_alpha PF01017.20 gi|352682802|ref|YP_004893326.1| - 0.27 11.1 6.8 0.12 12.2 1.7 2.1 2 0 0 2 2 2 0 STAT protein, all-alpha domain DUF724 PF05266.14 gi|352682802|ref|YP_004893326.1| - 0.28 11.0 8.9 1 9.2 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Seryl_tRNA_N PF02403.22 gi|352682802|ref|YP_004893326.1| - 0.28 11.4 15.4 1.7 8.9 4.1 2.8 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF16 PF01519.16 gi|352682802|ref|YP_004893326.1| - 0.29 11.6 7.4 0.35 11.4 1.8 2.5 2 0 0 2 2 2 0 Protein of unknown function DUF16 TPR_MLP1_2 PF07926.12 gi|352682802|ref|YP_004893326.1| - 0.3 11.2 12.7 2.4 8.2 3.4 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Spc24 PF08286.11 gi|352682802|ref|YP_004893326.1| - 0.33 11.2 9.2 0.75 10.1 0.2 2.9 2 1 0 2 2 2 0 Spc24 subunit of Ndc80 FlaC_arch PF05377.11 gi|352682802|ref|YP_004893326.1| - 0.4 11.1 5.5 5.5 7.5 0.7 2.8 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Hormone_1 PF00103.20 gi|352682802|ref|YP_004893326.1| - 0.41 10.4 2.8 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Somatotropin hormone family FmiP_Thoc5 PF09766.9 gi|352682802|ref|YP_004893326.1| - 0.49 9.6 5.3 2.6 7.2 0.9 2.2 2 0 0 2 2 2 0 Fms-interacting protein/Thoc5 Prefoldin_2 PF01920.20 gi|352682802|ref|YP_004893326.1| - 0.52 10.3 12.4 1 9.3 2.2 2.5 2 0 0 2 2 2 0 Prefoldin subunit Spc7 PF08317.11 gi|352682802|ref|YP_004893326.1| - 0.56 9.0 9.8 2.7 6.8 2.2 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein NFACT-C PF11923.8 gi|352682802|ref|YP_004893326.1| - 0.57 10.1 3.6 0.64 10.0 0.0 2.7 3 1 0 3 3 3 0 NFACT protein C-terminal domain Snapin_Pallidin PF14712.6 gi|352682802|ref|YP_004893326.1| - 0.64 10.5 8.6 9.8 6.7 3.1 2.5 2 0 0 2 2 2 0 Snapin/Pallidin DUF2408 PF10303.9 gi|352682802|ref|YP_004893326.1| - 0.64 10.6 4.6 9 6.9 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2408) Fez1 PF06818.15 gi|352682802|ref|YP_004893326.1| - 0.65 10.4 10.9 1.3 9.4 10.9 1.5 1 0 0 1 1 1 0 Fez1 Med4 PF10018.9 gi|352682802|ref|YP_004893326.1| - 0.71 9.5 6.2 1.4 8.5 0.3 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DHR10 PF18595.1 gi|352682802|ref|YP_004893326.1| - 0.85 9.7 17.1 0.35 11.0 4.2 2.5 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Cauli_AT PF03233.13 gi|352682802|ref|YP_004893326.1| - 0.86 9.5 4.8 3.9 7.4 1.1 2.3 2 0 0 2 2 2 0 Aphid transmission protein CENP-H PF05837.12 gi|352682802|ref|YP_004893326.1| - 0.88 10.0 9.5 5.1 7.5 1.9 2.5 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Nre_C PF04895.12 gi|352682802|ref|YP_004893326.1| - 0.9 9.5 4.5 0.4 10.6 0.4 2.4 3 0 0 3 3 2 0 Archaeal Nre, C-terminal DUF4407 PF14362.6 gi|352682802|ref|YP_004893326.1| - 0.92 8.8 7.3 2.3 7.5 7.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1043 PF06295.12 gi|352682802|ref|YP_004893326.1| - 1.2 9.1 4.3 3.1 7.8 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) DUF4349 PF14257.6 gi|352682802|ref|YP_004893326.1| - 1.2 8.5 11.9 0.66 9.4 2.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) TMF_DNA_bd PF12329.8 gi|352682802|ref|YP_004893326.1| - 1.3 9.1 14.7 2.4 8.2 5.0 2.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding MIP-T3_C PF17749.1 gi|352682802|ref|YP_004893326.1| - 1.5 8.8 7.4 7.8 6.4 1.1 2.3 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region ABC_tran_CTD PF16326.5 gi|352682802|ref|YP_004893326.1| - 2 8.7 13.7 4.9 7.5 2.8 2.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain ADIP PF11559.8 gi|352682802|ref|YP_004893326.1| - 2.8 8.0 11.3 1.2 9.2 1.6 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Prefoldin PF02996.17 gi|352682802|ref|YP_004893326.1| - 2.9 7.8 11.9 5.7 6.9 1.4 2.8 3 0 0 3 3 2 0 Prefoldin subunit ZapB PF06005.12 gi|352682802|ref|YP_004893326.1| - 3.7 8.1 15.3 2.5 8.6 4.6 2.5 2 0 0 2 2 2 0 Cell division protein ZapB KfrA_N PF11740.8 gi|352682802|ref|YP_004893326.1| - 4.3 8.0 12.0 3.2 8.5 0.2 3.0 3 0 0 3 3 2 0 Plasmid replication region DNA-binding N-term DUF4795 PF16043.5 gi|352682802|ref|YP_004893326.1| - 4.6 6.8 10.3 42 3.7 10.4 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) CENP-F_leu_zip PF10473.9 gi|352682802|ref|YP_004893326.1| - 8.1 6.5 15.9 7.5 6.6 4.0 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AP_endonuc_2 PF01261.24 gi|352682803|ref|YP_004893327.1| - 5.8e-24 84.7 0.2 1.1e-23 83.9 0.2 1.4 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|352682803|ref|YP_004893327.1| - 0.00061 19.1 0.0 0.00092 18.5 0.0 1.2 1 0 0 1 1 1 1 UV-endonuclease UvdE TruD PF01142.18 gi|352682804|ref|YP_004893328.1| - 4.3e-104 348.6 0.0 2.1e-103 346.4 0.0 1.8 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF362 PF04015.12 gi|352682805|ref|YP_004893329.1| - 0.001 19.4 0.0 0.0014 18.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF362) Ribosomal_L14 PF00238.19 gi|352682806|ref|YP_004893330.1| - 6e-36 123.2 0.3 7.7e-36 122.9 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e AdoHcyase PF05221.17 gi|352682807|ref|YP_004893331.1| - 2.4e-71 240.4 0.0 3.6e-71 239.8 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|352682807|ref|YP_004893331.1| - 1.5e-51 174.7 0.1 2.3e-51 174.1 0.1 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|352682807|ref|YP_004893331.1| - 4.9e-06 26.0 0.2 1.4e-05 24.5 0.1 1.8 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|352682807|ref|YP_004893331.1| - 7.3e-05 22.4 0.1 0.00016 21.3 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|352682807|ref|YP_004893331.1| - 0.07 13.4 0.2 0.23 11.7 0.1 1.9 2 0 0 2 2 2 0 TrkA-N domain Arg_repressor PF01316.21 gi|352682807|ref|YP_004893331.1| - 0.12 12.2 0.0 0.39 10.5 0.0 1.8 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain DUF4147 PF13660.6 gi|352682808|ref|YP_004893332.1| - 0.091 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4147) HTH_47 PF16221.5 gi|352682809|ref|YP_004893333.1| - 0.16 11.5 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 winged helix-turn-helix B3_4 PF03483.17 gi|352682810|ref|YP_004893334.1| - 4.5e-23 81.8 0.0 9.3e-23 80.8 0.0 1.5 2 0 0 2 2 2 1 B3/4 domain Glyco_hydro_108 PF05838.12 gi|352682810|ref|YP_004893334.1| - 0.17 12.4 0.0 0.31 11.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase 108 Zeta_toxin PF06414.12 gi|352682811|ref|YP_004893335.1| - 0.00016 21.0 0.0 0.00029 20.2 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin cobW PF02492.19 gi|352682811|ref|YP_004893335.1| - 0.00056 19.5 0.0 0.022 14.3 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.17 gi|352682811|ref|YP_004893335.1| - 0.0039 17.3 0.0 0.0076 16.4 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain MobB PF03205.14 gi|352682811|ref|YP_004893335.1| - 0.015 15.2 0.0 0.034 14.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ParA PF10609.9 gi|352682811|ref|YP_004893335.1| - 0.021 14.3 0.2 0.04 13.4 0.2 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|352682811|ref|YP_004893335.1| - 0.028 14.2 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|352682811|ref|YP_004893335.1| - 0.043 13.9 1.6 0.098 12.7 0.4 2.2 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|352682811|ref|YP_004893335.1| - 0.046 14.2 0.0 0.072 13.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter APS_kinase PF01583.20 gi|352682811|ref|YP_004893335.1| - 0.12 12.3 0.0 0.97 9.3 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase Metallophos_2 PF12850.7 gi|352682812|ref|YP_004893336.1| - 7.3e-08 32.8 0.0 3.1e-07 30.8 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|352682812|ref|YP_004893336.1| - 0.0012 19.3 0.2 0.019 15.5 0.2 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Ribonuc_red_lgC PF02867.15 gi|352682814|ref|YP_004893338.1| - 2.2e-145 485.2 0.0 2.7e-145 484.9 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|352682814|ref|YP_004893338.1| - 1.5e-12 47.3 0.1 3.6e-12 46.1 0.1 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|352682814|ref|YP_004893338.1| - 0.0002 21.8 0.0 0.00061 20.3 0.0 1.8 1 0 0 1 1 1 1 ATP cone domain DUF3493 PF11998.8 gi|352682815|ref|YP_004893339.1| - 0.035 14.3 0.3 0.077 13.2 0.3 1.6 1 0 0 1 1 1 0 Low psii accumulation1 / Rep27 YrhC PF14143.6 gi|352682815|ref|YP_004893339.1| - 0.057 13.5 0.7 0.057 13.5 0.7 2.4 2 0 0 2 2 2 0 YrhC-like protein 7TMR-DISM_7TM PF07695.11 gi|352682815|ref|YP_004893339.1| - 0.089 12.7 15.4 0.78 9.6 5.7 2.2 1 1 1 2 2 2 0 7TM diverse intracellular signalling DUF1461 PF07314.11 gi|352682815|ref|YP_004893339.1| - 0.23 11.4 3.0 0.42 10.5 3.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) Wzy_C PF04932.15 gi|352682815|ref|YP_004893339.1| - 3.7 7.1 15.3 0.23 11.1 6.1 2.1 1 1 1 2 2 2 0 O-Antigen ligase tRNA-synt_2b PF00587.25 gi|352682817|ref|YP_004893341.1| - 3.5e-30 105.3 0.0 5.3e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|352682817|ref|YP_004893341.1| - 3.2e-20 72.4 4.3 6.3e-20 71.4 4.3 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF2203 PF09969.9 gi|352682817|ref|YP_004893341.1| - 0.013 16.2 0.3 0.028 15.1 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) BBP1_C PF15272.6 gi|352682817|ref|YP_004893341.1| - 0.027 14.3 0.4 0.046 13.5 0.4 1.3 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal FlxA PF14282.6 gi|352682817|ref|YP_004893341.1| - 0.041 13.9 3.4 0.062 13.3 3.4 1.2 1 0 0 1 1 1 0 FlxA-like protein TolA_bind_tri PF16331.5 gi|352682817|ref|YP_004893341.1| - 0.05 13.7 3.3 0.19 11.9 2.4 2.1 1 1 1 2 2 2 0 TolA binding protein trimerisation CENP-F_leu_zip PF10473.9 gi|352682817|ref|YP_004893341.1| - 0.066 13.2 4.5 0.13 12.3 4.5 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GAS PF13851.6 gi|352682817|ref|YP_004893341.1| - 0.11 11.8 4.7 0.2 11.0 4.7 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Dor1 PF04124.12 gi|352682817|ref|YP_004893341.1| - 0.16 10.6 1.5 1.6 7.3 0.9 2.0 2 0 0 2 2 2 0 Dor1-like family Cep57_MT_bd PF06657.13 gi|352682817|ref|YP_004893341.1| - 0.23 11.9 6.1 0.42 11.1 6.1 1.4 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 FapA PF03961.13 gi|352682817|ref|YP_004893341.1| - 0.23 10.0 1.4 0.38 9.3 1.4 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A APG6_N PF17675.1 gi|352682817|ref|YP_004893341.1| - 0.32 11.5 4.0 0.59 10.7 4.0 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region DivIC PF04977.15 gi|352682817|ref|YP_004893341.1| - 3.2 7.6 7.1 1.1 9.1 2.6 2.2 1 1 1 2 2 2 0 Septum formation initiator AA_kinase PF00696.28 gi|352682819|ref|YP_004893343.1| - 2.1e-21 76.7 0.1 2.6e-20 73.0 0.1 2.0 1 1 0 1 1 1 1 Amino acid kinase family HTH_23 PF13384.6 gi|352682820|ref|YP_004893344.1| - 3.3e-07 29.9 0.1 6.9e-07 28.9 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|352682820|ref|YP_004893344.1| - 5.4e-06 26.0 0.1 5.4e-06 26.0 0.1 2.1 3 0 0 3 3 3 1 Sigma-70, region 4 GerE PF00196.19 gi|352682820|ref|YP_004893344.1| - 5.5e-06 25.8 0.2 2.2e-05 23.9 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_7 PF02796.15 gi|352682820|ref|YP_004893344.1| - 7.1e-06 26.0 0.2 2.1e-05 24.5 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|352682820|ref|YP_004893344.1| - 5.4e-05 22.9 0.1 0.00012 21.7 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|352682820|ref|YP_004893344.1| - 0.00033 20.7 0.1 0.00082 19.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|352682820|ref|YP_004893344.1| - 0.00034 20.6 0.0 0.0006 19.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix TnsD PF15978.5 gi|352682820|ref|YP_004893344.1| - 0.00035 19.7 0.0 0.00037 19.6 0.0 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D TrmB PF01978.19 gi|352682820|ref|YP_004893344.1| - 0.00071 19.4 0.9 0.023 14.6 0.0 2.6 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|352682820|ref|YP_004893344.1| - 0.0014 18.2 0.4 0.0047 16.5 0.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|352682820|ref|YP_004893344.1| - 0.0016 18.9 0.2 0.0061 17.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|352682820|ref|YP_004893344.1| - 0.0026 17.6 0.0 0.0052 16.6 0.0 1.6 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_17 PF12728.7 gi|352682820|ref|YP_004893344.1| - 0.0066 16.6 0.0 0.014 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|352682820|ref|YP_004893344.1| - 0.007 16.3 0.2 0.12 12.2 0.0 2.1 2 0 0 2 2 2 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|352682820|ref|YP_004893344.1| - 0.011 15.3 0.0 0.029 13.9 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_22 PF13309.6 gi|352682820|ref|YP_004893344.1| - 0.012 15.6 0.0 0.039 14.0 0.0 1.9 1 0 0 1 1 1 0 HTH domain HTH_11 PF08279.12 gi|352682820|ref|YP_004893344.1| - 0.013 15.4 0.5 0.086 12.8 0.0 2.3 2 0 0 2 2 2 0 HTH domain HTH_8 PF02954.19 gi|352682820|ref|YP_004893344.1| - 0.017 14.9 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family Sigma70_r3 PF04539.16 gi|352682820|ref|YP_004893344.1| - 0.02 15.0 0.0 0.04 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 Exonuc_VII_S PF02609.16 gi|352682820|ref|YP_004893344.1| - 0.06 13.4 0.6 0.16 12.0 0.1 2.0 2 1 1 3 3 3 0 Exonuclease VII small subunit HTH_10 PF04967.12 gi|352682820|ref|YP_004893344.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain HTH_30 PF13556.6 gi|352682820|ref|YP_004893344.1| - 0.066 13.0 0.6 0.2 11.5 0.0 2.0 2 1 0 2 2 2 0 PucR C-terminal helix-turn-helix domain CAP_N PF01213.19 gi|352682820|ref|YP_004893344.1| - 0.084 12.3 0.1 0.13 11.7 0.1 1.3 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal HTH_36 PF13730.6 gi|352682820|ref|YP_004893344.1| - 0.085 12.8 0.9 0.21 11.6 0.1 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain LacI PF00356.21 gi|352682820|ref|YP_004893344.1| - 0.1 12.4 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family PAX PF00292.18 gi|352682820|ref|YP_004893344.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 'Paired box' domain Matrilin_ccoil PF10393.9 gi|352682820|ref|YP_004893344.1| - 0.13 12.2 0.5 0.28 11.1 0.2 1.7 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin HTH_Tnp_IS1 PF12759.7 gi|352682820|ref|YP_004893344.1| - 0.13 11.9 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 InsA C-terminal domain MMR_HSR1_C PF08438.10 gi|352682821|ref|YP_004893345.1| - 1.4e-34 119.0 0.0 2e-34 118.5 0.0 1.2 1 0 0 1 1 1 1 GTPase of unknown function C-terminal TGS PF02824.21 gi|352682821|ref|YP_004893345.1| - 1.1e-07 31.8 0.0 2.3e-07 30.8 0.0 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|352682821|ref|YP_004893345.1| - 2.6e-07 30.7 0.0 5e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase LexA_DNA_bind PF01726.16 gi|352682821|ref|YP_004893345.1| - 0.019 14.7 0.1 2.5 7.9 0.0 2.5 2 0 0 2 2 2 0 LexA DNA binding domain CBS PF00571.28 gi|352682823|ref|YP_004893347.1| - 6.4e-53 177.0 23.9 1.3e-08 35.1 0.0 7.8 8 0 0 8 8 8 7 CBS domain TruB_C PF09142.11 gi|352682823|ref|YP_004893347.1| - 0.021 14.6 2.7 0.81 9.5 0.3 3.5 3 0 0 3 3 3 0 tRNA Pseudouridine synthase II, C terminal IF3_N PF05198.16 gi|352682823|ref|YP_004893347.1| - 0.046 14.0 0.2 35 4.8 0.0 4.1 4 0 0 4 4 4 0 Translation initiation factor IF-3, N-terminal domain HisG_C PF08029.11 gi|352682823|ref|YP_004893347.1| - 0.11 12.6 0.5 11 6.3 0.1 3.0 2 1 1 3 3 3 0 HisG, C-terminal domain DUF167 PF02594.16 gi|352682824|ref|YP_004893348.1| - 0.077 13.1 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised ACR, YggU family COG1872 Ribosomal_S11 PF00411.19 gi|352682825|ref|YP_004893349.1| - 1.9e-43 147.3 1.4 2.6e-43 146.9 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 NOG1 PF06858.14 gi|352682827|ref|YP_004893351.1| - 4e-22 77.7 0.8 9.2e-22 76.6 0.5 1.8 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) NOG1_N PF17835.1 gi|352682827|ref|YP_004893351.1| - 6.5e-22 78.2 0.0 1.1e-21 77.5 0.0 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|352682827|ref|YP_004893351.1| - 4.9e-20 71.7 0.0 7.6e-20 71.1 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|352682827|ref|YP_004893351.1| - 8.9e-15 54.6 0.1 1.3e-14 54.0 0.1 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|352682827|ref|YP_004893351.1| - 1.1e-05 25.4 2.4 0.002 18.0 0.1 3.0 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|352682827|ref|YP_004893351.1| - 1.8e-05 24.4 0.1 0.00081 19.0 0.1 2.3 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|352682827|ref|YP_004893351.1| - 9.7e-05 22.3 0.3 0.00025 21.0 0.3 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Ras PF00071.22 gi|352682827|ref|YP_004893351.1| - 0.00046 19.8 0.0 0.00088 18.9 0.0 1.5 1 1 0 1 1 1 1 Ras family ATP_bind_1 PF03029.17 gi|352682827|ref|YP_004893351.1| - 0.0012 18.7 0.2 0.014 15.2 0.0 2.1 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AIG1 PF04548.16 gi|352682827|ref|YP_004893351.1| - 0.0029 17.0 0.1 0.011 15.0 0.0 1.8 1 1 1 2 2 2 1 AIG1 family PduV-EutP PF10662.9 gi|352682827|ref|YP_004893351.1| - 0.0052 16.5 0.1 0.013 15.2 0.1 1.8 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|352682827|ref|YP_004893351.1| - 0.12 12.0 0.3 0.26 10.9 0.1 1.5 1 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|352682827|ref|YP_004893351.1| - 0.38 10.8 2.0 1.4 9.0 0.1 2.1 1 1 1 2 2 2 0 Dynamin family RTC PF01137.21 gi|352682828|ref|YP_004893352.1| - 7.9e-82 273.7 0.1 9.2e-82 273.5 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|352682828|ref|YP_004893352.1| - 7.7e-28 97.0 0.3 1.9e-27 95.8 0.3 1.7 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Succ_CoA_lig PF13607.6 gi|352682829|ref|YP_004893353.1| - 2.6e-46 156.9 0.3 1.8e-43 147.7 0.1 3.0 3 0 0 3 3 3 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|352682829|ref|YP_004893353.1| - 3.2e-20 72.8 2.0 1.4e-19 70.7 0.2 2.8 4 0 0 4 4 4 1 CoA binding domain CoA_binding PF02629.19 gi|352682829|ref|YP_004893353.1| - 1.2e-08 35.5 0.2 4.5e-08 33.7 0.1 2.0 2 0 0 2 2 2 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|352682829|ref|YP_004893353.1| - 0.038 14.0 0.0 0.065 13.2 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Flavodoxin_5 PF12724.7 gi|352682829|ref|YP_004893353.1| - 0.065 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Flavodoxin domain GFO_IDH_MocA PF01408.22 gi|352682829|ref|YP_004893353.1| - 0.17 12.8 0.0 0.97 10.3 0.0 2.3 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold SAM_adeno_trans PF01887.16 gi|352682830|ref|YP_004893354.1| - 7.9e-83 277.5 0.0 8.9e-83 277.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase SBBP PF06739.11 gi|352682830|ref|YP_004893354.1| - 0.018 15.0 0.5 0.036 14.1 0.5 1.5 1 0 0 1 1 1 0 Beta-propeller repeat DUF1923 PF09083.10 gi|352682831|ref|YP_004893355.1| - 0.095 12.4 0.1 0.13 12.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1923) PhoU_div PF01865.16 gi|352682832|ref|YP_004893356.1| - 1.2e-13 50.9 9.2 2.4e-13 49.9 9.2 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF47 TFIIF_beta PF02270.15 gi|352682832|ref|YP_004893356.1| - 0.12 12.6 0.0 0.29 11.3 0.0 1.7 1 0 0 1 1 1 0 TFIIF, beta subunit HTH domain Rh5 PF18515.1 gi|352682832|ref|YP_004893356.1| - 0.15 11.3 7.5 1 8.6 0.1 2.8 2 1 1 3 3 3 0 Rh5 coiled-coil domain Radical_SAM PF04055.21 gi|352682833|ref|YP_004893357.1| - 6.6e-19 68.9 0.3 1.2e-17 64.8 0.0 2.5 3 0 0 3 3 3 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.12 gi|352682833|ref|YP_004893357.1| - 0.0019 17.7 3.4 0.0028 17.1 0.8 2.5 2 1 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.7 gi|352682833|ref|YP_004893357.1| - 0.021 14.9 0.1 0.021 14.9 0.1 2.7 3 0 0 3 3 3 0 Double zinc ribbon Fer4_12 PF13353.6 gi|352682833|ref|YP_004893357.1| - 0.031 14.5 0.0 0.068 13.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Zn-ribbon_8 PF09723.10 gi|352682833|ref|YP_004893357.1| - 0.19 11.9 9.4 2.7 8.2 0.1 3.7 4 0 0 4 4 4 0 Zinc ribbon domain GFA PF04828.14 gi|352682833|ref|YP_004893357.1| - 0.46 10.8 3.8 0.54 10.6 0.0 2.9 3 1 1 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.11 gi|352682833|ref|YP_004893357.1| - 0.88 9.5 4.1 2.8 7.9 0.2 2.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Ribosomal_L37ae PF01780.19 gi|352682833|ref|YP_004893357.1| - 1.1 9.4 3.9 7.8 6.7 0.0 2.8 2 1 1 3 3 3 0 Ribosomal L37ae protein family Nudix_N_2 PF14803.6 gi|352682833|ref|YP_004893357.1| - 2.6 8.0 10.1 2.4 8.1 0.2 3.6 3 0 0 3 3 3 0 Nudix N-terminal DUF3268 PF11672.8 gi|352682833|ref|YP_004893357.1| - 4.2 7.7 6.5 2 8.8 0.1 2.8 3 0 0 3 3 3 0 zinc-finger-containing domain zinc-ribbons_6 PF07191.12 gi|352682833|ref|YP_004893357.1| - 4.6 7.3 7.3 0.67 10.0 0.1 2.9 3 1 0 3 3 3 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|352682833|ref|YP_004893357.1| - 7.3 6.1 11.5 0.88 9.1 0.2 3.5 4 0 0 4 4 4 0 zinc-ribbon domain Proteasome PF00227.26 gi|352682834|ref|YP_004893358.1| - 1.2e-52 178.2 0.3 1.4e-52 178.0 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit Endonuclease_5 PF04493.14 gi|352682835|ref|YP_004893359.1| - 2.9e-50 170.7 0.1 3.7e-50 170.4 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|352682835|ref|YP_004893359.1| - 0.00091 18.7 0.0 0.0017 17.8 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function DUF99 DUF357 PF04010.13 gi|352682836|ref|YP_004893360.1| - 1e-17 64.0 0.8 1.7e-17 63.3 0.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|352682836|ref|YP_004893360.1| - 3.4e-09 37.0 0.0 7e-09 36.0 0.0 1.5 2 0 0 2 2 2 1 Cytidylyltransferase-like Formyl_trans_N PF00551.19 gi|352682836|ref|YP_004893360.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Formyl transferase LidA_Long_CC PF18641.1 gi|352682837|ref|YP_004893361.1| - 0.012 15.7 1.0 0.013 15.5 1.0 1.0 1 0 0 1 1 1 0 LidA long coiled-coil domain DUF3173 PF11372.8 gi|352682837|ref|YP_004893361.1| - 0.017 15.0 1.6 0.02 14.7 0.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3173) LUC7 PF03194.15 gi|352682837|ref|YP_004893361.1| - 0.067 12.9 0.5 0.073 12.7 0.5 1.0 1 0 0 1 1 1 0 LUC7 N_terminus PPR PF01535.20 gi|352682837|ref|YP_004893361.1| - 0.073 13.4 0.2 0.38 11.1 0.1 2.0 2 0 0 2 2 2 0 PPR repeat PPR_2 PF13041.6 gi|352682837|ref|YP_004893361.1| - 0.21 11.8 0.1 0.35 11.1 0.1 1.3 1 0 0 1 1 1 0 PPR repeat family UPF0179 PF03684.13 gi|352682838|ref|YP_004893362.1| - 5.8e-31 107.3 2.6 6.6e-31 107.1 2.6 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Fer4_21 PF14697.6 gi|352682838|ref|YP_004893362.1| - 0.18 12.0 5.7 2.3 8.4 1.6 2.4 2 1 0 2 2 2 0 4Fe-4S dicluster domain DDE_Tnp_1_6 PF13751.6 gi|352682838|ref|YP_004893362.1| - 0.3 11.3 4.2 0.97 9.7 0.0 2.2 1 1 1 2 2 2 0 Transposase DDE domain Fer4 PF00037.27 gi|352682838|ref|YP_004893362.1| - 0.43 10.5 6.1 5 7.1 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain RIO1 PF01163.22 gi|352682839|ref|YP_004893363.1| - 1.4e-38 132.4 0.0 2.3e-38 131.7 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|352682839|ref|YP_004893363.1| - 1.3e-20 73.3 1.5 2.8e-20 72.3 1.5 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|352682839|ref|YP_004893363.1| - 5.1e-08 33.1 1.3 0.00034 20.6 0.1 2.8 1 1 1 2 2 2 2 Phosphotransferase enzyme family ABC1 PF03109.16 gi|352682839|ref|YP_004893363.1| - 0.0021 18.2 0.0 0.41 10.8 0.0 2.4 2 0 0 2 2 2 1 ABC1 family WaaY PF06176.11 gi|352682839|ref|YP_004893363.1| - 0.012 15.2 0.1 0.023 14.3 0.1 1.5 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) HrcA_DNA-bdg PF03444.15 gi|352682839|ref|YP_004893363.1| - 0.054 13.1 0.4 0.43 10.3 0.0 2.5 2 1 1 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Pkinase PF00069.25 gi|352682839|ref|YP_004893363.1| - 0.07 12.5 0.9 0.32 10.3 0.1 2.4 2 1 0 2 2 2 0 Protein kinase domain DUF460 PF04312.13 gi|352682840|ref|YP_004893364.1| - 1.8e-44 150.9 0.2 3.8e-44 149.8 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) ADIP PF11559.8 gi|352682840|ref|YP_004893364.1| - 0.00014 22.0 3.3 0.00038 20.6 3.3 1.7 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Atg14 PF10186.9 gi|352682840|ref|YP_004893364.1| - 0.0028 16.8 0.3 0.0028 16.8 0.3 1.5 2 0 0 2 2 2 1 Vacuolar sorting 38 and autophagy-related subunit 14 Baculo_PEP_C PF04513.12 gi|352682840|ref|YP_004893364.1| - 0.0042 17.1 0.1 0.018 15.1 0.1 2.0 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus KASH_CCD PF14662.6 gi|352682840|ref|YP_004893364.1| - 0.0044 16.9 3.0 0.0044 16.9 3.0 1.8 2 0 0 2 2 2 1 Coiled-coil region of CCDC155 or KASH TBCC_N PF16752.5 gi|352682840|ref|YP_004893364.1| - 0.013 15.9 0.6 0.013 15.9 0.6 2.0 2 0 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain acVLRF1 PF18859.1 gi|352682840|ref|YP_004893364.1| - 0.015 15.6 0.0 0.037 14.3 0.0 1.7 1 0 0 1 1 1 0 Actinobacteria/chloroflexi VLRF1 release factor MCR_gamma PF02240.16 gi|352682840|ref|YP_004893364.1| - 0.021 14.1 0.2 0.56 9.4 0.0 2.6 2 1 1 3 3 3 0 Methyl-coenzyme M reductase gamma subunit Apolipoprotein PF01442.18 gi|352682840|ref|YP_004893364.1| - 0.047 13.5 3.9 0.088 12.7 2.0 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain Plk4_PB1 PF18190.1 gi|352682840|ref|YP_004893364.1| - 0.091 12.9 0.6 17 5.6 0.0 2.5 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 1 Tex_YqgF PF16921.5 gi|352682840|ref|YP_004893364.1| - 0.13 12.7 0.0 0.59 10.6 0.0 2.1 2 0 0 2 2 1 0 Tex protein YqgF-like domain Lzipper-MIP1 PF14389.6 gi|352682840|ref|YP_004893364.1| - 0.17 12.2 3.8 0.1 12.9 0.5 2.4 2 0 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 DUF1664 PF07889.12 gi|352682840|ref|YP_004893364.1| - 0.28 11.2 1.2 1.6 8.8 0.6 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) OrfB_IS605 PF01385.19 gi|352682840|ref|YP_004893364.1| - 0.61 10.3 5.8 24 5.2 0.0 3.8 3 1 0 3 3 3 0 Probable transposase ABC_tran_CTD PF16326.5 gi|352682840|ref|YP_004893364.1| - 0.84 9.9 12.0 1.2 9.4 1.2 3.2 2 1 0 3 3 2 0 ABC transporter C-terminal domain CorA PF01544.18 gi|352682840|ref|YP_004893364.1| - 0.91 8.8 5.3 0.87 8.8 3.2 1.9 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein TSC22 PF01166.18 gi|352682840|ref|YP_004893364.1| - 3.4 8.0 13.9 0.78 10.1 1.2 3.7 3 0 0 3 3 3 0 TSC-22/dip/bun family Cep57_MT_bd PF06657.13 gi|352682840|ref|YP_004893364.1| - 4.9 7.7 12.7 0.07 13.6 3.2 2.9 3 1 1 4 4 2 0 Centrosome microtubule-binding domain of Cep57 Prefoldin_2 PF01920.20 gi|352682840|ref|YP_004893364.1| - 4.9 7.2 15.5 2.1 8.3 0.4 3.4 3 0 0 3 3 3 0 Prefoldin subunit DUF4140 PF13600.6 gi|352682840|ref|YP_004893364.1| - 7.8 7.0 9.2 3.9 8.0 0.8 3.4 3 2 1 4 4 3 0 N-terminal domain of unknown function (DUF4140) DUF4164 PF13747.6 gi|352682840|ref|YP_004893364.1| - 9.5 6.6 13.3 3.1 8.1 3.4 3.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) AdoMet_Synthase PF01941.19 gi|352682841|ref|YP_004893365.1| - 1.4e-174 580.5 5.3 1.6e-174 580.3 5.3 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.22 gi|352682842|ref|YP_004893366.1| - 7.3e-17 60.8 1.3 8.3e-17 60.7 1.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|352682842|ref|YP_004893366.1| - 0.006 16.7 0.1 0.0072 16.4 0.1 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Glycoprotein_B PF00606.18 gi|352682842|ref|YP_004893366.1| - 0.072 12.5 0.1 0.072 12.5 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus Glycoprotein B ectodomain RNA_pol_N PF01194.17 gi|352682843|ref|YP_004893367.1| - 5.5e-26 90.6 0.1 6.1e-26 90.5 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|352682843|ref|YP_004893367.1| - 0.054 13.7 0.2 0.1 12.9 0.2 1.5 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|352682844|ref|YP_004893368.1| - 5.4e-32 110.9 0.0 7e-32 110.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|352682845|ref|YP_004893369.1| - 6.9e-10 39.3 1.1 1.5e-08 34.9 1.1 2.1 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|352682846|ref|YP_004893370.1| - 3.1e-08 33.2 0.1 3.9e-08 32.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|352682846|ref|YP_004893370.1| - 4.9e-06 27.2 0.3 8.9e-06 26.4 0.3 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|352682847|ref|YP_004893371.1| - 1.1e-26 93.4 0.0 2e-26 92.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|352682847|ref|YP_004893371.1| - 8.8e-08 31.5 0.0 1.6e-07 30.6 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosom_S12_S23 PF00164.25 gi|352682848|ref|YP_004893372.1| - 1e-42 144.4 0.8 1.3e-42 144.0 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|352682849|ref|YP_004893373.1| - 3.8e-19 68.3 2.5 5.2e-13 48.6 0.2 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|352682849|ref|YP_004893373.1| - 9.7e-13 48.0 3.8 4.5e-12 45.9 0.9 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|352682849|ref|YP_004893373.1| - 0.00012 21.9 0.2 0.0082 16.0 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_1 PF00013.29 gi|352682849|ref|YP_004893373.1| - 0.015 15.1 4.5 11 6.0 0.2 3.2 2 1 1 3 3 3 0 KH domain Ribosomal_L7Ae PF01248.26 gi|352682850|ref|YP_004893374.1| - 2.1e-15 56.2 0.0 2.5e-15 56.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|352682851|ref|YP_004893375.1| - 9.2e-52 176.1 0.1 1.3e-51 175.6 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF211 PF02680.14 gi|352682851|ref|YP_004893375.1| - 0.00063 19.8 0.4 0.55 10.4 0.1 2.8 2 1 0 2 2 2 2 Uncharacterized ArCR, COG1888 Fusion_gly PF00523.18 gi|352682851|ref|YP_004893375.1| - 0.088 11.0 0.2 0.12 10.6 0.2 1.2 1 0 0 1 1 1 0 Fusion glycoprotein F0 HMA PF00403.26 gi|352682851|ref|YP_004893375.1| - 0.14 12.6 1.8 9.9 6.7 0.0 3.5 2 1 2 4 4 4 0 Heavy-metal-associated domain RNA_pol_Rpb1_1 PF04997.12 gi|352682852|ref|YP_004893376.1| - 9.3e-95 317.5 0.0 1.2e-94 317.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|352682852|ref|YP_004893376.1| - 2.4e-74 249.1 0.0 4e-74 248.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|352682852|ref|YP_004893376.1| - 6.7e-32 110.6 0.0 1.2e-31 109.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|352682852|ref|YP_004893376.1| - 7.2e-26 90.2 0.0 1.3e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|352682852|ref|YP_004893376.1| - 6.9e-24 84.7 0.0 1.1e-23 84.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 CpXC PF14353.6 gi|352682852|ref|YP_004893376.1| - 0.0014 18.7 4.3 0.11 12.6 0.0 3.8 4 0 0 4 4 3 1 CpXC protein zf-RING_7 PF02591.15 gi|352682852|ref|YP_004893376.1| - 0.011 15.9 6.1 0.13 12.5 0.2 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain DZR PF12773.7 gi|352682852|ref|YP_004893376.1| - 0.028 14.5 0.7 3.5 7.7 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon HHV-5_US34A PF17087.5 gi|352682852|ref|YP_004893376.1| - 0.031 14.4 0.1 0.079 13.1 0.1 1.6 1 0 0 1 1 1 0 Herpesvirus US34A protein family Zn-ribbon_8 PF09723.10 gi|352682852|ref|YP_004893376.1| - 0.046 13.9 4.8 5.5 7.2 0.0 3.1 2 1 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|352682852|ref|YP_004893376.1| - 0.075 13.4 0.9 0.24 11.8 0.1 2.2 2 1 0 2 2 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|352682852|ref|YP_004893376.1| - 0.13 12.2 5.2 1.8 8.6 0.2 2.7 3 0 0 3 3 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|352682852|ref|YP_004893376.1| - 0.14 11.6 6.2 1.3 8.5 0.3 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|352682852|ref|YP_004893376.1| - 0.24 11.7 0.6 13 6.2 0.0 2.5 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-IS66 PF13005.7 gi|352682852|ref|YP_004893376.1| - 1.6 9.2 6.4 8.8 6.8 0.1 3.6 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|352682852|ref|YP_004893376.1| - 2.6 8.1 5.0 47 4.0 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|352682852|ref|YP_004893376.1| - 6.9 6.7 10.6 5.6 7.0 0.4 3.2 3 0 0 3 3 3 0 Nudix N-terminal UPF0547 PF10571.9 gi|352682852|ref|YP_004893376.1| - 8.3 6.6 6.9 10 6.3 1.0 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RNA_pol_Rpb2_6 PF00562.28 gi|352682853|ref|YP_004893377.1| - 1.5e-131 439.1 0.0 1.9e-131 438.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|352682853|ref|YP_004893377.1| - 2.6e-42 144.6 0.0 3.7e-42 144.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_7 PF04560.20 gi|352682853|ref|YP_004893377.1| - 1.2e-27 96.1 0.0 2.2e-27 95.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|352682853|ref|YP_004893377.1| - 6.5e-27 93.5 0.0 1.8e-26 92.1 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_2 PF04561.14 gi|352682853|ref|YP_004893377.1| - 2.8e-24 85.8 0.0 5.5e-24 84.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_4 PF04566.13 gi|352682853|ref|YP_004893377.1| - 6.7e-21 74.3 0.8 1.6e-20 73.1 0.8 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|352682853|ref|YP_004893377.1| - 5.8e-09 36.4 2.3 2.8e-08 34.2 2.3 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|352682853|ref|YP_004893377.1| - 0.16 12.2 0.1 1.3 9.3 0.1 2.4 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb5_C PF01191.19 gi|352682854|ref|YP_004893378.1| - 2.5e-26 91.4 0.0 3.2e-26 91.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain ATP-synt_ab PF00006.25 gi|352682855|ref|YP_004893379.1| - 4.2e-77 258.6 0.0 5.6e-77 258.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|352682855|ref|YP_004893379.1| - 1.1e-39 135.0 0.0 1.9e-39 134.3 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|352682855|ref|YP_004893379.1| - 8.9e-12 45.4 0.2 2e-11 44.2 0.2 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|352682855|ref|YP_004893379.1| - 0.036 14.3 0.0 0.087 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain vATP-synt_E PF01991.18 gi|352682856|ref|YP_004893380.1| - 3.6e-08 33.0 10.5 8.2e-08 31.9 10.4 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DUF4618 PF15397.6 gi|352682856|ref|YP_004893380.1| - 0.01 15.3 3.1 0.015 14.7 3.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) SHE3 PF17078.5 gi|352682856|ref|YP_004893380.1| - 0.011 15.4 6.1 0.016 14.9 6.1 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF4080 PF13311.6 gi|352682856|ref|YP_004893380.1| - 0.014 15.6 1.6 0.019 15.2 1.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4080) Nefa_Nip30_N PF10187.9 gi|352682856|ref|YP_004893380.1| - 0.1 13.0 2.0 0.11 12.9 1.0 1.6 1 1 0 1 1 1 0 N-terminal domain of NEFA-interacting nuclear protein NIP30 Ku_PK_bind PF08785.11 gi|352682856|ref|YP_004893380.1| - 0.12 12.6 2.6 0.22 11.7 2.6 1.5 1 0 0 1 1 1 0 Ku C terminal domain like Fib_alpha PF08702.10 gi|352682856|ref|YP_004893380.1| - 8.6 6.5 8.1 2 8.6 1.0 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family ATP-synt_F PF01990.17 gi|352682857|ref|YP_004893381.1| - 1.8e-10 41.0 0.0 2.1e-10 40.8 0.0 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit NOG1_N PF17835.1 gi|352682857|ref|YP_004893381.1| - 0.015 15.3 0.1 0.018 15.0 0.1 1.1 1 0 0 1 1 1 0 NOG1 N-terminal helical domain Endonuc-FokI_C PF09254.11 gi|352682857|ref|YP_004893381.1| - 0.022 14.1 0.1 0.028 13.7 0.1 1.3 1 1 0 1 1 1 0 Restriction endonuclease FokI, C terminal CarS-like PF01864.17 gi|352682858|ref|YP_004893382.1| - 3.9e-33 114.9 7.0 2.9e-32 112.0 7.0 1.9 1 1 0 1 1 1 1 CDP-archaeol synthase Phageshock_PspG PF09583.10 gi|352682858|ref|YP_004893382.1| - 0.16 12.3 0.2 0.16 12.3 0.2 3.1 3 1 0 3 3 3 0 Phage shock protein G (Phageshock_PspG) zf-Di19 PF05605.12 gi|352682859|ref|YP_004893383.1| - 3.5e-09 36.8 2.6 2.5e-05 24.5 1.0 2.3 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.6 gi|352682859|ref|YP_004893383.1| - 6.8e-08 32.7 10.9 0.00057 20.5 0.2 4.2 4 1 0 4 4 4 2 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|352682859|ref|YP_004893383.1| - 5.1e-06 26.6 14.3 0.0097 16.3 0.2 4.1 4 1 0 4 4 3 2 Zinc finger, C2H2 type DUF2318 PF10080.9 gi|352682859|ref|YP_004893383.1| - 0.0023 18.0 5.3 0.056 13.6 0.3 2.9 1 1 2 3 3 3 1 Predicted membrane protein (DUF2318) zf-C2H2_12 PF18658.1 gi|352682859|ref|YP_004893383.1| - 0.0037 16.8 10.9 1.1 8.9 0.0 3.8 2 1 2 4 4 4 2 Zinc-finger C2H2-type zf-C2HC_2 PF13913.6 gi|352682859|ref|YP_004893383.1| - 0.007 16.2 0.7 0.007 16.2 0.7 3.6 5 0 0 5 5 4 1 zinc-finger of a C2HC-type Gin PF10764.9 gi|352682859|ref|YP_004893383.1| - 0.007 16.3 6.6 0.18 11.8 1.0 3.0 2 1 1 3 3 3 1 Inhibitor of sigma-G Gin zf-C2H2_2 PF12756.7 gi|352682859|ref|YP_004893383.1| - 0.0081 16.5 6.6 9.3 6.7 4.8 3.5 1 1 1 2 2 2 0 C2H2 type zinc-finger (2 copies) zf-HIT PF04438.16 gi|352682859|ref|YP_004893383.1| - 0.018 14.9 11.5 3.6 7.5 0.3 4.1 4 0 0 4 4 4 0 HIT zinc finger DUF1677 PF07911.13 gi|352682859|ref|YP_004893383.1| - 0.039 14.4 1.0 0.039 14.4 1.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1677) Zn-ribbon_8 PF09723.10 gi|352682859|ref|YP_004893383.1| - 0.039 14.1 4.9 0.41 10.8 0.1 3.1 3 1 0 3 3 3 0 Zinc ribbon domain zf_C2HC_14 PF18574.1 gi|352682859|ref|YP_004893383.1| - 0.044 13.6 0.4 0.32 10.8 0.0 2.3 2 0 0 2 2 2 0 C2HC Zing finger domain zf-C2H2_jaz PF12171.8 gi|352682859|ref|YP_004893383.1| - 0.053 13.8 0.0 0.053 13.8 0.0 4.1 4 1 0 4 4 3 0 Zinc-finger double-stranded RNA-binding RNHCP PF12647.7 gi|352682859|ref|YP_004893383.1| - 0.059 13.4 3.9 13 5.8 0.1 3.1 3 0 0 3 3 3 0 RNHCP domain OrfB_Zn_ribbon PF07282.11 gi|352682859|ref|YP_004893383.1| - 0.063 13.2 4.2 3.5 7.6 0.1 2.6 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-met PF12874.7 gi|352682859|ref|YP_004893383.1| - 0.075 13.4 6.0 9.7 6.7 0.0 3.9 3 1 0 3 3 3 0 Zinc-finger of C2H2 type DZR PF12773.7 gi|352682859|ref|YP_004893383.1| - 0.081 13.0 5.7 3.7 7.6 3.4 3.1 1 1 1 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|352682859|ref|YP_004893383.1| - 0.13 12.3 2.1 4.1 7.5 2.1 2.5 1 1 0 1 1 1 0 zinc-ribbons DUF2175 PF09943.9 gi|352682859|ref|YP_004893383.1| - 0.15 12.4 0.1 0.15 12.4 0.1 2.8 4 0 0 4 4 3 0 Uncharacterized protein conserved in archaea (DUF2175) zf-RRN7 PF11781.8 gi|352682859|ref|YP_004893383.1| - 0.18 11.5 10.3 5.8 6.7 0.2 3.9 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Actin_micro PF17003.5 gi|352682859|ref|YP_004893383.1| - 0.2 10.8 5.9 2.4 7.2 0.1 2.6 1 1 1 2 2 2 0 Putative actin-like family zf-C3HC4_3 PF13920.6 gi|352682859|ref|YP_004893383.1| - 0.23 11.4 7.5 1.7 8.6 3.8 3.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) RNF220 PF15926.5 gi|352682859|ref|YP_004893383.1| - 0.27 10.8 2.3 0.6 9.7 0.2 2.3 1 1 2 3 3 3 0 E3 ubiquitin-protein ligase RNF220 C1_2 PF03107.16 gi|352682859|ref|YP_004893383.1| - 0.28 11.6 8.2 9.5 6.6 0.0 3.5 2 1 2 4 4 4 0 C1 domain zf_UBZ PF18439.1 gi|352682859|ref|YP_004893383.1| - 0.34 10.5 6.6 3 7.5 0.1 3.4 4 0 0 4 4 3 0 Ubiquitin-Binding Zinc Finger zf-TFIIIC PF12660.7 gi|352682859|ref|YP_004893383.1| - 0.39 10.7 6.4 4.7 7.2 6.4 2.9 1 1 0 1 1 1 0 Putative zinc-finger of transcription factor IIIC complex zf-BED PF02892.15 gi|352682859|ref|YP_004893383.1| - 0.41 10.7 13.9 6.8 6.8 4.1 3.8 2 1 1 3 3 3 0 BED zinc finger zf_C2H2_13 PF18508.1 gi|352682859|ref|YP_004893383.1| - 0.51 10.0 3.6 5.5 6.7 0.2 3.0 3 0 0 3 3 3 0 Zinc finger domain zf-H2C2_2 PF13465.6 gi|352682859|ref|YP_004893383.1| - 0.52 10.8 0.1 0.52 10.8 0.1 3.6 5 0 0 5 5 3 0 Zinc-finger double domain zf-trcl PF13451.6 gi|352682859|ref|YP_004893383.1| - 0.87 9.5 5.6 5.2 7.1 0.1 2.6 3 0 0 3 3 2 0 Probable zinc-ribbon domain BIR PF00653.21 gi|352682859|ref|YP_004893383.1| - 0.97 10.1 6.4 2.6 8.8 0.1 3.0 1 1 3 4 4 3 0 Inhibitor of Apoptosis domain HNH PF01844.23 gi|352682859|ref|YP_004893383.1| - 1.6 9.0 12.1 16 5.7 0.4 3.7 4 0 0 4 4 4 0 HNH endonuclease DUF2256 PF10013.9 gi|352682859|ref|YP_004893383.1| - 1.9 8.7 7.4 14 5.9 0.2 3.7 4 0 0 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2256) zinc_ribbon_2 PF13240.6 gi|352682859|ref|YP_004893383.1| - 3.8 7.4 10.3 14 5.6 0.0 3.7 4 0 0 4 4 4 0 zinc-ribbon domain zf-UBP PF02148.19 gi|352682859|ref|YP_004893383.1| - 6.9 7.1 10.2 68 3.9 10.2 2.7 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein DUF4428 PF14471.6 gi|352682859|ref|YP_004893383.1| - 7.1 6.6 10.0 2 8.4 2.0 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4428) Cript PF10235.9 gi|352682859|ref|YP_004893383.1| - 7.4 7.2 8.5 21 5.8 0.8 3.1 1 1 2 3 3 3 0 Microtubule-associated protein CRIPT zf-C2H2_6 PF13912.6 gi|352682859|ref|YP_004893383.1| - 8 6.6 8.3 6.6 6.9 0.3 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger Radical_SAM PF04055.21 gi|352682861|ref|YP_004893385.1| - 8.5e-15 55.5 0.0 2.6e-14 53.9 0.0 1.9 1 0 0 1 1 1 1 Radical SAM superfamily Holin_BhlA PF10960.8 gi|352682861|ref|YP_004893385.1| - 0.22 11.5 0.9 0.5 10.4 0.1 1.9 2 0 0 2 2 2 0 BhlA holin family Rad51 PF08423.11 gi|352682863|ref|YP_004893387.1| - 5e-95 317.6 0.0 6.2e-95 317.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|352682863|ref|YP_004893387.1| - 3.4e-12 46.4 0.3 6e-12 45.6 0.1 1.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|352682863|ref|YP_004893387.1| - 3.9e-11 42.7 0.0 9.2e-11 41.5 0.0 1.7 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|352682863|ref|YP_004893387.1| - 3.2e-09 36.6 0.1 6e-09 35.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|352682863|ref|YP_004893387.1| - 1.2e-07 32.2 0.3 1.2e-07 32.2 0.3 2.9 3 0 0 3 3 2 1 Helix-hairpin-helix domain DnaB_C PF03796.15 gi|352682863|ref|YP_004893387.1| - 8.2e-05 22.1 2.7 0.12 11.7 0.0 2.7 1 1 1 2 2 2 2 DnaB-like helicase C terminal domain BAF PF02961.14 gi|352682863|ref|YP_004893387.1| - 0.0058 17.0 0.0 0.013 15.9 0.0 1.5 1 0 0 1 1 1 1 Barrier to autointegration factor AAA_24 PF13479.6 gi|352682863|ref|YP_004893387.1| - 0.012 15.3 0.0 0.031 14.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|352682863|ref|YP_004893387.1| - 0.02 15.1 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF1805 PF08827.11 gi|352682863|ref|YP_004893387.1| - 0.025 14.9 0.2 0.33 11.3 0.0 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1805) AAA_18 PF13238.6 gi|352682863|ref|YP_004893387.1| - 0.038 14.5 0.0 0.13 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF1318 PF07027.12 gi|352682863|ref|YP_004893387.1| - 0.059 13.8 0.5 3.9 8.0 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1318) DNA_pol_lambd_f PF10391.9 gi|352682863|ref|YP_004893387.1| - 0.061 13.2 0.0 4.3 7.3 0.0 2.6 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda ABC_tran PF00005.27 gi|352682863|ref|YP_004893387.1| - 0.14 12.7 0.0 0.47 11.0 0.0 1.8 1 1 1 2 2 2 0 ABC transporter TsaE PF02367.17 gi|352682863|ref|YP_004893387.1| - 0.15 12.0 0.0 0.53 10.3 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PAXNEB PF05625.11 gi|352682863|ref|YP_004893387.1| - 0.26 10.4 0.5 4.2 6.4 0.1 2.2 1 1 1 2 2 2 0 PAXNEB protein Met_10 PF02475.16 gi|352682864|ref|YP_004893388.1| - 4.7e-51 173.4 0.0 5.8e-51 173.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Fibrillarin PF01269.17 gi|352682864|ref|YP_004893388.1| - 0.0014 17.8 0.0 0.0026 16.9 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin TRM PF02005.16 gi|352682864|ref|YP_004893388.1| - 0.004 16.4 0.0 0.0044 16.2 0.0 1.1 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltr_RsmB-F PF01189.17 gi|352682864|ref|YP_004893388.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F tRNA_U5-meth_tr PF05958.11 gi|352682864|ref|YP_004893388.1| - 0.016 14.2 0.0 0.024 13.6 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|352682864|ref|YP_004893388.1| - 0.061 12.9 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|352682864|ref|YP_004893388.1| - 0.072 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_4 PF02390.17 gi|352682864|ref|YP_004893388.1| - 0.083 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DUF2153 PF09921.9 gi|352682865|ref|YP_004893389.1| - 1.8e-40 137.6 0.0 2.2e-40 137.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) DUF4635 PF15466.6 gi|352682865|ref|YP_004893389.1| - 0.1 12.1 0.4 0.78 9.3 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4635) DUF1912 PF08930.10 gi|352682865|ref|YP_004893389.1| - 0.12 12.6 0.5 9 6.5 0.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1912) CagZ PF09053.10 gi|352682865|ref|YP_004893389.1| - 0.14 11.7 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 CagZ DUF2070 PF09843.9 gi|352682866|ref|YP_004893390.1| - 6e-104 348.4 5.8 1.4e-103 347.2 5.8 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2070) UDG PF03167.19 gi|352682868|ref|YP_004893392.1| - 1e-40 139.3 0.0 1.3e-40 138.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NLE PF08154.12 gi|352682869|ref|YP_004893393.1| - 0.011 16.3 0.0 0.043 14.3 0.0 2.1 1 0 0 1 1 1 0 NLE (NUC135) domain BppU_N PF10651.9 gi|352682869|ref|YP_004893393.1| - 0.021 14.5 0.2 0.031 14.0 0.2 1.2 1 0 0 1 1 1 0 BppU N-terminal domain DUF4600 PF15372.6 gi|352682869|ref|YP_004893393.1| - 0.041 14.3 1.0 0.041 14.3 1.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4600) DivIVA PF05103.13 gi|352682869|ref|YP_004893393.1| - 0.11 12.5 5.7 0.13 12.4 3.9 1.8 1 1 1 2 2 2 0 DivIVA protein CorA PF01544.18 gi|352682869|ref|YP_004893393.1| - 0.15 11.4 6.0 0.21 10.9 6.0 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Exonuc_VII_S PF02609.16 gi|352682869|ref|YP_004893393.1| - 0.84 9.7 5.8 0.27 11.3 1.4 2.5 2 1 0 2 2 2 0 Exonuclease VII small subunit FlaC_arch PF05377.11 gi|352682869|ref|YP_004893393.1| - 1.3 9.4 4.7 0.51 10.8 0.7 2.3 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF3797 PF12677.7 gi|352682870|ref|YP_004893394.1| - 0.0026 17.6 3.6 0.16 11.9 3.4 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3797) Elf1 PF05129.13 gi|352682870|ref|YP_004893394.1| - 0.036 14.1 0.1 0.046 13.8 0.1 1.2 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like A2L_zn_ribbon PF08792.10 gi|352682870|ref|YP_004893394.1| - 0.045 13.5 0.9 1.7 8.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain CK_II_beta PF01214.18 gi|352682870|ref|YP_004893394.1| - 0.066 13.0 0.1 0.077 12.8 0.1 1.1 1 0 0 1 1 1 0 Casein kinase II regulatory subunit zf-RRN7 PF11781.8 gi|352682870|ref|YP_004893394.1| - 5.3 6.8 8.4 8.5 6.2 0.2 2.9 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 RimK PF08443.11 gi|352682871|ref|YP_004893395.1| - 5.6e-35 120.7 0.0 7.1e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|352682871|ref|YP_004893395.1| - 3.7e-13 49.3 0.0 5.2e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|352682871|ref|YP_004893395.1| - 3.8e-07 30.3 0.0 6.3e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|352682871|ref|YP_004893395.1| - 1e-05 24.9 0.0 0.0076 15.5 0.0 2.7 2 1 1 3 3 3 2 Sugar-transfer associated ATP-grasp ATPgrasp_YheCD PF14398.6 gi|352682871|ref|YP_004893395.1| - 0.0078 15.5 0.0 0.65 9.2 0.0 2.6 1 1 1 2 2 2 1 YheC/D like ATP-grasp SpoU_sub_bind PF08032.12 gi|352682871|ref|YP_004893395.1| - 0.079 13.2 0.0 4.7 7.6 0.0 2.5 2 0 0 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding TTL PF03133.15 gi|352682871|ref|YP_004893395.1| - 0.087 11.9 0.0 0.24 10.5 0.0 1.6 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family zf-ribbon_3 PF13248.6 gi|352682874|ref|YP_004893398.1| - 0.00017 20.8 0.9 0.1 12.0 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|352682874|ref|YP_004893398.1| - 0.00057 19.5 1.2 0.1 12.3 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|352682874|ref|YP_004893398.1| - 0.0023 17.8 2.3 0.66 10.0 0.1 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zinc-ribbons_6 PF07191.12 gi|352682874|ref|YP_004893398.1| - 0.0029 17.5 0.1 0.0052 16.7 0.1 1.4 1 1 0 1 1 1 1 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|352682874|ref|YP_004893398.1| - 0.0051 16.9 0.3 1.1 9.4 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain DZR PF12773.7 gi|352682874|ref|YP_004893398.1| - 0.0051 16.8 0.2 0.011 15.7 0.2 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-TFIIB PF13453.6 gi|352682874|ref|YP_004893398.1| - 0.0061 15.9 0.6 1 8.8 0.0 2.2 2 0 0 2 2 2 1 Transcription factor zinc-finger zf_Rg PF17915.1 gi|352682874|ref|YP_004893398.1| - 0.0076 15.6 0.1 2.4 7.7 0.0 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger Terminase_GpA PF05876.12 gi|352682874|ref|YP_004893398.1| - 0.012 14.3 0.0 0.012 14.2 0.0 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) TF_Zn_Ribbon PF08271.12 gi|352682874|ref|YP_004893398.1| - 0.015 14.8 1.1 3.6 7.2 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ZPR1 PF03367.13 gi|352682874|ref|YP_004893398.1| - 0.019 14.8 0.2 0.02 14.7 0.2 1.0 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zf-NADH-PPase PF09297.11 gi|352682874|ref|YP_004893398.1| - 0.023 14.4 0.4 0.68 9.7 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|352682874|ref|YP_004893398.1| - 0.024 15.4 0.0 0.029 15.1 0.0 1.1 1 0 0 1 1 1 0 zinc-ribbon family Cys_rich_KTR PF14205.6 gi|352682874|ref|YP_004893398.1| - 0.024 14.4 0.3 3.5 7.5 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich KTR Ogr_Delta PF04606.12 gi|352682874|ref|YP_004893398.1| - 0.026 14.5 1.4 1.2 9.2 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_7 PF02591.15 gi|352682874|ref|YP_004893398.1| - 0.03 14.5 0.6 3 8.1 0.0 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-ISL3 PF14690.6 gi|352682874|ref|YP_004893398.1| - 0.035 14.8 0.2 6.5 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ribosomal_L24 PF17136.4 gi|352682874|ref|YP_004893398.1| - 0.042 14.3 0.1 0.6 10.6 0.0 2.0 2 0 0 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 Nudix_N_2 PF14803.6 gi|352682874|ref|YP_004893398.1| - 0.045 13.7 0.3 2 8.4 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|352682874|ref|YP_004893398.1| - 0.048 13.6 0.3 0.13 12.2 0.3 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain IBR PF01485.21 gi|352682874|ref|YP_004893398.1| - 0.056 13.7 0.1 0.073 13.3 0.1 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain TackOD1 PF18551.1 gi|352682874|ref|YP_004893398.1| - 0.065 12.9 0.6 0.34 10.5 0.6 1.8 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 YdjO PF14169.6 gi|352682874|ref|YP_004893398.1| - 0.067 12.9 1.2 0.37 10.6 0.4 2.1 2 0 0 2 2 2 0 Cold-inducible protein YdjO zinc_ribbon_9 PF14369.6 gi|352682874|ref|YP_004893398.1| - 0.071 13.4 0.2 14 6.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon zf-FPG_IleRS PF06827.14 gi|352682874|ref|YP_004893398.1| - 0.076 12.9 2.0 7.8 6.5 0.5 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C4_Topoisom PF01396.19 gi|352682874|ref|YP_004893398.1| - 0.093 12.5 3.1 0.84 9.5 0.4 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Sgf11 PF08209.11 gi|352682874|ref|YP_004893398.1| - 0.1 12.2 1.4 4.4 7.0 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rubredoxin PF00301.20 gi|352682874|ref|YP_004893398.1| - 0.1 12.6 0.4 6.4 6.9 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin zf_UBZ PF18439.1 gi|352682874|ref|YP_004893398.1| - 0.11 12.1 1.3 1.7 8.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_recom PF13408.6 gi|352682874|ref|YP_004893398.1| - 0.12 12.9 2.4 1.7 9.2 2.4 2.0 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C2H2_9 PF16293.5 gi|352682874|ref|YP_004893398.1| - 0.13 12.1 2.1 2.3 8.1 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) Prok-RING_1 PF14446.6 gi|352682874|ref|YP_004893398.1| - 0.35 10.8 2.5 3.2 7.8 2.6 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.7 gi|352682874|ref|YP_004893398.1| - 0.55 10.2 4.0 4 7.5 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1610 PF07754.11 gi|352682874|ref|YP_004893398.1| - 0.96 9.5 7.3 4.6 7.3 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) VbhA PF18495.1 gi|352682875|ref|YP_004893399.1| - 0.011 15.5 0.2 0.025 14.5 0.0 1.7 2 0 0 2 2 2 0 Antitoxin VbhA MarR_2 PF12802.7 gi|352682877|ref|YP_004893401.1| - 3.6e-10 39.6 0.3 5.8e-10 38.9 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|352682877|ref|YP_004893401.1| - 1.9e-09 37.2 0.0 2.9e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|352682877|ref|YP_004893401.1| - 2.5e-07 30.1 0.0 4.6e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|352682877|ref|YP_004893401.1| - 9.2e-07 28.8 0.1 1.8e-06 27.9 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|352682877|ref|YP_004893401.1| - 1e-06 28.5 0.0 1.7e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|352682877|ref|YP_004893401.1| - 5.4e-06 26.8 0.1 9.2e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|352682877|ref|YP_004893401.1| - 1.2e-05 25.2 0.0 1.8e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|352682877|ref|YP_004893401.1| - 5.2e-05 23.6 0.0 7.7e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor Fe_dep_repress PF01325.19 gi|352682877|ref|YP_004893401.1| - 5.5e-05 23.3 0.0 7.9e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain CcmD PF04995.14 gi|352682877|ref|YP_004893401.1| - 6.8e-05 22.9 1.8 0.0003 20.8 0.7 2.2 2 0 0 2 2 2 1 Heme exporter protein D (CcmD) GntR PF00392.21 gi|352682877|ref|YP_004893401.1| - 0.00094 18.8 0.2 0.0015 18.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|352682877|ref|YP_004893401.1| - 0.0014 18.5 0.0 0.0025 17.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PaaX PF07848.12 gi|352682877|ref|YP_004893401.1| - 0.0015 18.7 0.2 0.0022 18.1 0.2 1.2 1 0 0 1 1 1 1 PaaX-like protein HTH_29 PF13551.6 gi|352682877|ref|YP_004893401.1| - 0.0034 17.4 0.2 0.0052 16.8 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn helix DUF2250 PF10007.9 gi|352682877|ref|YP_004893401.1| - 0.0075 16.4 0.0 0.01 15.9 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.6 gi|352682877|ref|YP_004893401.1| - 0.0099 15.8 0.0 0.021 14.8 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.11 gi|352682877|ref|YP_004893401.1| - 0.013 16.1 0.0 0.019 15.6 0.0 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HTH_23 PF13384.6 gi|352682877|ref|YP_004893401.1| - 0.018 14.8 0.1 0.029 14.2 0.1 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TFIIE_alpha PF02002.17 gi|352682877|ref|YP_004893401.1| - 0.023 14.5 0.0 0.038 13.9 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_AsnC-type PF13404.6 gi|352682877|ref|YP_004893401.1| - 0.029 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|352682877|ref|YP_004893401.1| - 0.029 14.3 0.1 0.048 13.6 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|352682877|ref|YP_004893401.1| - 0.034 14.5 0.0 0.047 14.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_41 PF14502.6 gi|352682877|ref|YP_004893401.1| - 0.041 13.6 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain ASCH PF04266.14 gi|352682879|ref|YP_004893403.1| - 1.5e-10 41.6 0.0 1.8e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 ASCH domain CUE PF02845.16 gi|352682879|ref|YP_004893403.1| - 0.15 11.8 0.1 0.41 10.4 0.0 1.8 2 0 0 2 2 2 0 CUE domain Peptidase_M24 PF00557.24 gi|352682880|ref|YP_004893404.1| - 1.5e-57 194.7 0.1 1.9e-57 194.4 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|352682880|ref|YP_004893404.1| - 2.9e-07 31.2 0.1 5.5e-07 30.3 0.1 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Zwilch PF09817.9 gi|352682880|ref|YP_004893404.1| - 0.19 10.1 0.1 0.26 9.7 0.1 1.1 1 0 0 1 1 1 0 RZZ complex, subunit zwilch Cons_hypoth95 PF03602.15 gi|352682881|ref|YP_004893405.1| - 6.6e-07 29.1 0.0 8.7e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|352682881|ref|YP_004893405.1| - 0.0093 15.5 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|352682881|ref|YP_004893405.1| - 0.01 16.5 0.0 0.11 13.2 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Spermine_synth PF01564.17 gi|352682881|ref|YP_004893405.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain UPF0020 PF01170.18 gi|352682881|ref|YP_004893405.1| - 0.049 13.3 0.0 0.089 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|352682881|ref|YP_004893405.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_30 PF05430.11 gi|352682881|ref|YP_004893405.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase DUF4056 PF13265.6 gi|352682882|ref|YP_004893406.1| - 0.081 12.3 0.0 0.096 12.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4056) HD PF01966.22 gi|352682883|ref|YP_004893407.1| - 1.1e-11 45.0 0.6 2.7e-11 43.7 0.2 1.9 2 0 0 2 2 2 1 HD domain HD_2 PF12917.7 gi|352682883|ref|YP_004893407.1| - 0.021 14.6 0.1 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 HD containing hydrolase-like enzyme HDOD PF08668.12 gi|352682883|ref|YP_004893407.1| - 0.18 11.3 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 HDOD domain Pyr_redox_2 PF07992.14 gi|352682884|ref|YP_004893408.1| - 3.5e-06 26.5 0.0 5e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|352682884|ref|YP_004893408.1| - 0.0047 16.2 2.4 0.022 14.0 0.2 2.1 2 0 0 2 2 2 1 FAD binding domain DAO PF01266.24 gi|352682884|ref|YP_004893408.1| - 0.0057 16.3 0.8 0.66 9.5 0.4 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase MacB_PCD PF12704.7 gi|352682884|ref|YP_004893408.1| - 0.018 15.4 0.0 0.028 14.8 0.0 1.3 1 0 0 1 1 1 0 MacB-like periplasmic core domain NAD_binding_8 PF13450.6 gi|352682884|ref|YP_004893408.1| - 0.019 15.2 0.2 0.044 14.0 0.2 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|352682884|ref|YP_004893408.1| - 0.02 14.2 0.0 0.041 13.1 0.0 1.5 1 0 0 1 1 1 0 Thi4 family HI0933_like PF03486.14 gi|352682884|ref|YP_004893408.1| - 0.18 10.4 0.2 0.36 9.5 0.2 1.4 1 0 0 1 1 1 0 HI0933-like protein Peptidase_S24 PF00717.23 gi|352682885|ref|YP_004893409.1| - 2.5e-07 30.5 0.0 4.5e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase S24-like DUF5641 PF18701.1 gi|352682885|ref|YP_004893409.1| - 0.13 12.5 0.0 0.49 10.6 0.0 1.9 1 1 2 3 3 3 0 Family of unknown function (DUF5641) Cpn60_TCP1 PF00118.24 gi|352682886|ref|YP_004893410.1| - 3.5e-179 596.5 9.1 4e-179 596.4 9.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SHOCT PF09851.9 gi|352682886|ref|YP_004893410.1| - 0.0068 16.1 0.1 0.024 14.3 0.1 2.0 1 0 0 1 1 1 1 Short C-terminal domain RNA_pol_Rpb6 PF01192.22 gi|352682887|ref|YP_004893411.1| - 3.7e-13 49.2 0.1 7.4e-13 48.2 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb6 PikAIV_N PF18605.1 gi|352682887|ref|YP_004893411.1| - 0.0043 16.6 0.3 0.011 15.3 0.3 1.7 1 0 0 1 1 1 1 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain DDE_Tnp_1_4 PF13701.6 gi|352682887|ref|YP_004893411.1| - 0.058 11.7 0.0 0.065 11.5 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain group 1 PcrB PF01884.17 gi|352682889|ref|YP_004893413.1| - 2.5e-50 171.0 0.0 3.2e-50 170.7 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|352682889|ref|YP_004893413.1| - 0.00017 21.1 0.0 0.00031 20.3 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Adenine_deam_C PF13382.6 gi|352682889|ref|YP_004893413.1| - 0.092 12.1 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 Adenine deaminase C-terminal domain Glyco_trans_1_4 PF13692.6 gi|352682889|ref|YP_004893413.1| - 0.12 12.8 0.2 0.48 10.9 0.0 2.0 2 1 0 2 2 2 0 Glycosyl transferases group 1 Elf1 PF05129.13 gi|352682890|ref|YP_004893414.1| - 8.3e-15 54.6 0.1 9.5e-15 54.4 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.12 gi|352682890|ref|YP_004893414.1| - 2.7e-05 23.6 1.6 4.3e-05 22.9 1.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|352682890|ref|YP_004893414.1| - 0.00038 20.8 0.4 0.00057 20.2 0.4 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.12 gi|352682890|ref|YP_004893414.1| - 0.025 14.5 1.0 0.1 12.5 0.1 2.0 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|352682890|ref|YP_004893414.1| - 0.029 13.8 2.5 0.27 10.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|352682890|ref|YP_004893414.1| - 0.037 13.9 0.1 0.047 13.6 0.1 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Rubredoxin PF00301.20 gi|352682890|ref|YP_004893414.1| - 0.045 13.8 0.4 0.12 12.4 0.0 1.8 2 0 0 2 2 2 0 Rubredoxin GATA PF00320.27 gi|352682890|ref|YP_004893414.1| - 0.046 13.3 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 GATA zinc finger Ribosomal_L32p PF01783.23 gi|352682890|ref|YP_004893414.1| - 0.052 13.8 3.2 0.67 10.2 3.2 2.1 1 1 0 1 1 1 0 Ribosomal L32p protein family DUF2387 PF09526.10 gi|352682890|ref|YP_004893414.1| - 0.068 13.3 0.3 0.096 12.8 0.3 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) NMD3 PF04981.13 gi|352682890|ref|YP_004893414.1| - 0.068 12.6 0.1 0.073 12.5 0.1 1.1 1 0 0 1 1 1 0 NMD3 family DUF1610 PF07754.11 gi|352682890|ref|YP_004893414.1| - 0.076 13.0 1.0 0.076 13.0 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RING_7 PF02591.15 gi|352682890|ref|YP_004893414.1| - 0.088 13.0 0.9 1.5 9.1 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|352682890|ref|YP_004893414.1| - 0.093 12.9 2.1 0.27 11.4 1.7 1.9 1 1 2 3 3 3 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|352682890|ref|YP_004893414.1| - 0.1 12.9 1.5 4.7 7.5 0.3 2.3 1 1 1 2 2 2 0 zinc-ribbon Zn_Tnp_IS1595 PF12760.7 gi|352682890|ref|YP_004893414.1| - 0.1 12.6 2.2 0.27 11.2 2.2 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TackOD1 PF18551.1 gi|352682890|ref|YP_004893414.1| - 0.12 12.0 0.4 0.19 11.4 0.4 1.4 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Rubredoxin_2 PF18073.1 gi|352682890|ref|YP_004893414.1| - 0.18 11.5 1.8 1.5 8.6 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_10 PF10058.9 gi|352682890|ref|YP_004893414.1| - 0.27 11.0 2.3 2.4 8.0 0.2 2.0 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Prok-RING_1 PF14446.6 gi|352682890|ref|YP_004893414.1| - 0.58 10.1 4.7 12 5.9 0.4 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Inositol_P PF00459.25 gi|352682892|ref|YP_004893416.1| - 7.6e-16 58.4 0.0 1.3e-15 57.7 0.0 1.3 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|352682892|ref|YP_004893416.1| - 0.00064 19.3 0.0 0.001 18.6 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain SWIM PF04434.17 gi|352682893|ref|YP_004893417.1| - 0.00095 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 SWIM zinc finger ThuA PF06283.11 gi|352682893|ref|YP_004893417.1| - 0.053 13.7 0.0 0.068 13.4 0.0 1.1 1 0 0 1 1 1 0 Trehalose utilisation IGR PF09597.10 gi|352682894|ref|YP_004893418.1| - 0.13 12.4 0.1 0.22 11.7 0.1 1.4 1 0 0 1 1 1 0 IGR protein motif Sec61_beta PF03911.16 gi|352682895|ref|YP_004893419.1| - 3.9e-12 46.0 0.5 4.4e-12 45.8 0.5 1.1 1 0 0 1 1 1 1 Sec61beta family TatD_DNase PF01026.21 gi|352682896|ref|YP_004893420.1| - 6.2e-25 88.0 0.0 7.2e-25 87.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Bac_DnaA_C PF08299.11 gi|352682896|ref|YP_004893420.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein helix-turn-helix DegT_DnrJ_EryC1 PF01041.17 gi|352682897|ref|YP_004893421.1| - 5.2e-112 374.7 0.0 1.6e-111 373.2 0.0 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|352682897|ref|YP_004893421.1| - 4.7e-07 29.1 0.0 7.2e-07 28.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|352682897|ref|YP_004893421.1| - 0.00041 19.0 0.1 0.00053 18.6 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|352682897|ref|YP_004893421.1| - 0.041 13.2 0.1 0.06 12.6 0.1 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase ALS_ss_C PF10369.9 gi|352682897|ref|YP_004893421.1| - 0.046 13.9 0.0 0.25 11.6 0.0 2.1 2 0 0 2 2 2 0 Small subunit of acetolactate synthase FeS_assembly_P PF01883.19 gi|352682898|ref|YP_004893422.1| - 9.2e-15 54.6 1.0 1.4e-14 54.0 1.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein DUF2148 PF09918.9 gi|352682898|ref|YP_004893422.1| - 0.097 12.7 0.2 0.21 11.7 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) Flavin_Reduct PF01613.18 gi|352682899|ref|YP_004893423.1| - 2.9e-21 76.1 0.0 3.6e-21 75.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Importin_rep PF18773.1 gi|352682899|ref|YP_004893423.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Importin 13 repeat Pribosyltran PF00156.27 gi|352682900|ref|YP_004893424.1| - 2.1e-18 66.4 0.0 3.3e-18 65.7 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain RXT2_N PF08595.11 gi|352682900|ref|YP_004893424.1| - 0.25 11.3 0.0 0.42 10.6 0.0 1.3 1 0 0 1 1 1 0 RXT2-like, N-terminal Pribosyltran PF00156.27 gi|352682902|ref|YP_004893426.1| - 6.6e-08 32.2 0.1 1.2e-07 31.4 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|352682902|ref|YP_004893426.1| - 1e-07 31.9 0.3 6.6e-07 29.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|352682902|ref|YP_004893426.1| - 0.0093 16.3 0.2 0.085 13.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|352682902|ref|YP_004893426.1| - 0.012 15.7 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Sigma70_r4_2 PF08281.12 gi|352682902|ref|YP_004893426.1| - 0.067 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 PALP PF00291.25 gi|352682903|ref|YP_004893427.1| - 1.6e-05 24.5 1.9 0.0028 17.1 0.1 2.9 2 1 1 3 3 3 2 Pyridoxal-phosphate dependent enzyme DUF4342 PF14242.6 gi|352682903|ref|YP_004893427.1| - 0.18 11.8 0.2 0.39 10.7 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) PDH PF02153.17 gi|352682904|ref|YP_004893428.1| - 7.8e-12 44.7 0.0 9.5e-12 44.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|352682904|ref|YP_004893428.1| - 5.8e-07 30.0 0.5 5.3e-05 23.7 0.6 2.6 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|352682904|ref|YP_004893428.1| - 0.026 14.7 0.1 0.14 12.3 0.1 2.1 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|352682904|ref|YP_004893428.1| - 0.027 13.8 0.1 0.057 12.8 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|352682904|ref|YP_004893428.1| - 0.058 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus P5CR_dimer PF14748.6 gi|352682905|ref|YP_004893429.1| - 3.2e-19 69.1 0.0 5.1e-19 68.5 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|352682905|ref|YP_004893429.1| - 3.1e-11 43.7 0.1 2e-10 41.1 0.0 2.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|352682905|ref|YP_004893429.1| - 6.2e-08 33.0 0.1 5e-07 30.0 0.0 2.2 2 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|352682905|ref|YP_004893429.1| - 2.9e-06 26.8 0.0 5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|352682905|ref|YP_004893429.1| - 9.8e-06 25.2 0.0 1.5e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Rossmann-like PF10727.9 gi|352682905|ref|YP_004893429.1| - 0.00033 20.5 0.0 0.00065 19.6 0.0 1.4 1 0 0 1 1 1 1 Rossmann-like domain ApbA PF02558.16 gi|352682905|ref|YP_004893429.1| - 0.00064 19.4 0.1 0.0015 18.2 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ADH_N PF08240.12 gi|352682906|ref|YP_004893430.1| - 1.2e-29 102.4 0.2 2.2e-29 101.5 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|352682906|ref|YP_004893430.1| - 7.1e-23 81.0 0.0 1.1e-22 80.4 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|352682906|ref|YP_004893430.1| - 1.2e-11 45.8 0.0 2.3e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ACP_syn_III_C PF08541.10 gi|352682906|ref|YP_004893430.1| - 0.072 13.3 0.1 0.16 12.1 0.1 1.6 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TF_Zn_Ribbon PF08271.12 gi|352682907|ref|YP_004893431.1| - 4.5e-05 22.9 2.5 8.1e-05 22.1 2.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-NADH-PPase PF09297.11 gi|352682907|ref|YP_004893431.1| - 0.0093 15.6 0.9 0.015 15.0 0.9 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-RRN7 PF11781.8 gi|352682907|ref|YP_004893431.1| - 0.0098 15.6 1.9 0.026 14.2 1.9 1.7 1 1 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prok-RING_1 PF14446.6 gi|352682907|ref|YP_004893431.1| - 0.033 14.1 0.8 0.062 13.2 0.8 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RPA_interact_C PF14768.6 gi|352682907|ref|YP_004893431.1| - 0.047 14.3 0.1 0.16 12.5 0.1 1.8 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Lar_restr_allev PF14354.6 gi|352682907|ref|YP_004893431.1| - 0.063 13.7 0.3 0.14 12.5 0.3 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.17 gi|352682907|ref|YP_004893431.1| - 0.083 12.6 0.4 0.35 10.6 0.3 1.9 2 0 0 2 2 2 0 Ribosomal protein S27 PHD PF00628.29 gi|352682907|ref|YP_004893431.1| - 0.19 11.7 0.5 0.32 10.9 0.5 1.3 1 0 0 1 1 1 0 PHD-finger zf-ribbon_3 PF13248.6 gi|352682907|ref|YP_004893431.1| - 0.19 11.2 3.1 1.4 8.4 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|352682907|ref|YP_004893431.1| - 0.23 11.2 0.9 2 8.2 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain HalOD2 PF18547.1 gi|352682907|ref|YP_004893431.1| - 1.8 8.6 4.3 0.64 10.0 0.7 2.0 1 1 1 2 2 2 0 Halobacterial output domain 2 Aminotran_1_2 PF00155.21 gi|352682908|ref|YP_004893432.1| - 2e-19 70.0 0.0 3.3e-19 69.3 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II EMG1 PF03587.14 gi|352682909|ref|YP_004893433.1| - 1.8e-42 145.2 0.0 2.1e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Glyco_transf_4 PF13439.6 gi|352682909|ref|YP_004893433.1| - 0.0022 18.0 0.1 0.0064 16.5 0.0 1.7 1 1 1 2 2 2 1 Glycosyltransferase Family 4 GDI PF00996.18 gi|352682910|ref|YP_004893434.1| - 0.084 11.4 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 GDP dissociation inhibitor DUF3848 PF12959.7 gi|352682910|ref|YP_004893434.1| - 0.12 12.4 0.0 0.25 11.4 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3848) Methyltransf_25 PF13649.6 gi|352682911|ref|YP_004893435.1| - 1.1e-05 26.0 0.5 2.7e-05 24.8 0.5 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|352682911|ref|YP_004893435.1| - 3.9e-05 23.3 0.2 0.00014 21.4 0.1 1.9 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|352682911|ref|YP_004893435.1| - 6.9e-05 23.4 0.1 0.00011 22.8 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|352682911|ref|YP_004893435.1| - 0.00041 20.2 0.3 0.0007 19.4 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|352682911|ref|YP_004893435.1| - 0.0039 17.9 0.2 0.0077 17.0 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352682911|ref|YP_004893435.1| - 0.051 13.4 0.0 0.14 12.0 0.0 1.6 1 1 1 2 2 2 0 Methyltransferase domain PrmA PF06325.13 gi|352682911|ref|YP_004893435.1| - 0.073 12.4 0.7 0.11 11.9 0.7 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) MU2_FHA PF18221.1 gi|352682911|ref|YP_004893435.1| - 0.13 12.3 0.0 0.42 10.7 0.0 1.8 2 0 0 2 2 2 0 Mutator 2 Fork head associated domain RNA_pol_L_2 PF13656.6 gi|352682912|ref|YP_004893436.1| - 1e-15 57.2 0.0 1.2e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain DUF2067 PF09840.9 gi|352682913|ref|YP_004893437.1| - 3.8e-50 170.1 0.2 4.2e-50 169.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) DUF4974 PF16344.5 gi|352682913|ref|YP_004893437.1| - 0.0092 16.0 0.2 0.57 10.2 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4974) BMC PF00936.19 gi|352682913|ref|YP_004893437.1| - 0.018 15.1 0.2 0.25 11.3 0.0 2.4 2 0 0 2 2 2 0 BMC domain Prok-RING_1 PF14446.6 gi|352682914|ref|YP_004893438.1| - 0.00036 20.4 1.0 0.00084 19.2 1.0 1.6 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RRN7 PF11781.8 gi|352682914|ref|YP_004893438.1| - 0.0018 17.9 0.6 0.11 12.2 0.0 2.4 2 0 0 2 2 2 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nudix_N_2 PF14803.6 gi|352682914|ref|YP_004893438.1| - 0.0068 16.3 3.1 0.77 9.7 0.3 2.4 2 0 0 2 2 2 2 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|352682914|ref|YP_004893438.1| - 0.0077 15.6 1.0 1.2 8.6 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|352682914|ref|YP_004893438.1| - 0.0095 15.8 0.4 0.016 15.1 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|352682914|ref|YP_004893438.1| - 0.011 15.4 1.4 1.2 8.9 0.0 2.3 1 1 1 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|352682914|ref|YP_004893438.1| - 0.014 15.2 0.3 0.024 14.5 0.3 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|352682914|ref|YP_004893438.1| - 0.015 15.4 4.5 0.35 11.0 4.5 2.3 1 1 1 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|352682914|ref|YP_004893438.1| - 0.02 14.4 3.5 2 8.0 0.4 2.2 1 1 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.6 gi|352682914|ref|YP_004893438.1| - 0.028 14.9 4.3 2.5 8.7 0.1 2.5 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-ISL3 PF14690.6 gi|352682914|ref|YP_004893438.1| - 0.036 14.7 2.2 8.4 7.1 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.7 gi|352682914|ref|YP_004893438.1| - 0.037 14.0 4.8 1.3 9.0 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|352682914|ref|YP_004893438.1| - 0.046 13.9 5.6 0.048 13.8 3.7 2.0 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.19 gi|352682914|ref|YP_004893438.1| - 0.063 13.1 1.1 1.9 8.3 0.3 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|352682914|ref|YP_004893438.1| - 0.069 13.2 0.3 0.13 12.3 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.8 gi|352682914|ref|YP_004893438.1| - 0.084 12.8 1.0 7.3 6.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.16 gi|352682914|ref|YP_004893438.1| - 0.1 12.7 0.6 0.1 12.7 0.6 3.2 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.12 gi|352682914|ref|YP_004893438.1| - 0.12 12.4 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|352682914|ref|YP_004893438.1| - 0.13 12.2 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|352682914|ref|YP_004893438.1| - 0.14 12.1 2.2 6.7 6.7 0.0 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ogr_Delta PF04606.12 gi|352682914|ref|YP_004893438.1| - 0.15 12.1 3.2 4.6 7.3 0.3 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_2 PF13240.6 gi|352682914|ref|YP_004893438.1| - 0.16 11.7 3.1 3.7 7.4 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|352682914|ref|YP_004893438.1| - 0.29 11.2 2.8 4.6 7.3 0.2 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-NADH-PPase PF09297.11 gi|352682914|ref|YP_004893438.1| - 1.2 8.8 5.4 9.2 6.0 5.5 2.1 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ribosomal_L23 PF00276.20 gi|352682915|ref|YP_004893439.1| - 4.6e-16 59.0 6.2 6.3e-15 55.3 6.2 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 ubiquitin PF00240.23 gi|352682915|ref|YP_004893439.1| - 0.035 13.8 0.2 0.048 13.4 0.2 1.2 1 0 0 1 1 1 0 Ubiquitin family Ribosomal_L4 PF00573.22 gi|352682916|ref|YP_004893440.1| - 7e-41 140.0 0.0 9e-41 139.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|352682917|ref|YP_004893441.1| - 1e-68 232.0 0.0 2e-68 231.1 0.0 1.4 1 1 0 1 1 1 1 Ribosomal protein L3 DUF2175 PF09943.9 gi|352682918|ref|YP_004893442.1| - 1.4e-33 115.0 0.1 1.6e-33 114.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) DUF2685 PF10886.8 gi|352682918|ref|YP_004893442.1| - 0.011 15.9 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2685) Inhibitor_I9 PF05922.16 gi|352682918|ref|YP_004893442.1| - 0.03 15.0 0.0 0.032 14.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase inhibitor I9 AP2 PF00847.20 gi|352682918|ref|YP_004893442.1| - 0.033 14.4 0.9 0.45 10.8 0.4 2.2 2 0 0 2 2 2 0 AP2 domain Vps39_2 PF10367.9 gi|352682918|ref|YP_004893442.1| - 0.11 12.9 0.4 0.21 12.0 0.2 1.6 2 0 0 2 2 2 0 Vacuolar sorting protein 39 domain 2 DUF4972 PF16342.5 gi|352682918|ref|YP_004893442.1| - 0.14 11.9 0.1 0.19 11.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4972) Alpha-amylase PF00128.24 gi|352682919|ref|YP_004893443.1| - 1.9e-35 123.0 0.0 2.3e-34 119.5 0.0 2.0 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Bac_GDH PF05088.12 gi|352682919|ref|YP_004893443.1| - 0.12 9.8 0.0 0.17 9.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Glyco_hydro_31 PF01055.26 gi|352682920|ref|YP_004893444.1| - 1.8e-132 442.7 0.0 2.2e-132 442.4 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|352682920|ref|YP_004893444.1| - 5.5e-15 55.4 0.0 1.2e-14 54.3 0.0 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like GHL10 PF02638.15 gi|352682920|ref|YP_004893444.1| - 0.00078 18.6 0.3 0.028 13.5 0.0 2.1 2 0 0 2 2 2 1 Glycosyl hydrolase-like 10 GHL15 PF14885.6 gi|352682920|ref|YP_004893444.1| - 0.091 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 GHMP_kinases_N PF00288.26 gi|352682921|ref|YP_004893445.1| - 6.5e-12 45.5 0.7 6.5e-12 45.5 0.7 2.3 3 0 0 3 3 3 1 GHMP kinases N terminal domain PP-binding PF00550.25 gi|352682921|ref|YP_004893445.1| - 0.1 13.0 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphopantetheine attachment site Chorismate_synt PF01264.21 gi|352682922|ref|YP_004893446.1| - 1.1e-116 389.1 0.0 1.2e-116 389.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Shikimate_dh_N PF08501.11 gi|352682923|ref|YP_004893447.1| - 2.6e-24 85.3 0.0 5e-24 84.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|352682923|ref|YP_004893447.1| - 1.8e-11 44.3 0.1 5.1e-11 42.8 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|352682923|ref|YP_004893447.1| - 3.9e-10 39.3 0.6 1.3e-09 37.6 0.0 2.3 3 0 0 3 3 3 1 Shikimate 5'-dehydrogenase C-terminal domain F420_oxidored PF03807.17 gi|352682923|ref|YP_004893447.1| - 2.4e-06 28.0 0.6 5.7e-06 26.8 0.3 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|352682923|ref|YP_004893447.1| - 0.00059 20.1 0.2 0.0017 18.6 0.2 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|352682923|ref|YP_004893447.1| - 0.0013 18.1 0.2 0.0022 17.3 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|352682923|ref|YP_004893447.1| - 0.0053 17.2 0.0 0.0091 16.4 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding GFO_IDH_MocA PF01408.22 gi|352682923|ref|YP_004893447.1| - 0.047 14.5 0.1 0.11 13.3 0.1 1.7 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold OCD_Mu_crystall PF02423.15 gi|352682923|ref|YP_004893447.1| - 0.06 12.3 0.1 0.47 9.3 0.1 2.0 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family DHquinase_I PF01487.15 gi|352682924|ref|YP_004893448.1| - 7.8e-55 186.6 0.0 1.1e-54 186.2 0.0 1.2 1 0 0 1 1 1 1 Type I 3-dehydroquinase CM_2 PF01817.21 gi|352682924|ref|YP_004893448.1| - 7.2e-14 51.9 0.2 1.4e-13 51.0 0.2 1.5 1 0 0 1 1 1 1 Chorismate mutase type II Aminotran_1_2 PF00155.21 gi|352682925|ref|YP_004893449.1| - 2.3e-35 122.4 0.0 3.8e-35 121.7 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|352682925|ref|YP_004893449.1| - 0.00066 18.7 0.0 0.0012 17.8 0.0 1.4 2 0 0 2 2 2 1 Allinase DUF4380 PF14315.6 gi|352682925|ref|YP_004893449.1| - 0.093 11.6 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) EPSP_synthase PF00275.20 gi|352682926|ref|YP_004893450.1| - 3.6e-55 187.4 0.0 4.3e-55 187.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B5 PF03484.15 gi|352682926|ref|YP_004893450.1| - 0.0012 19.1 0.0 0.34 11.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetase B5 domain HTH_39 PF14090.6 gi|352682926|ref|YP_004893450.1| - 0.14 11.9 0.0 7.6 6.4 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain DHQ_synthase PF01761.20 gi|352682927|ref|YP_004893451.1| - 1.2e-81 273.8 0.0 1.4e-81 273.6 0.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|352682927|ref|YP_004893451.1| - 4.5e-05 23.3 1.0 0.00033 20.4 0.0 2.2 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|352682927|ref|YP_004893451.1| - 0.043 12.6 2.6 0.061 12.1 0.7 2.1 2 1 0 2 2 2 0 Iron-containing alcohol dehydrogenase CttA_N PF18244.1 gi|352682927|ref|YP_004893451.1| - 0.09 13.2 0.0 0.74 10.3 0.0 2.1 2 0 0 2 2 2 0 Cellulose-binding protein CttA N-terminal domain Transket_pyr PF02779.24 gi|352682928|ref|YP_004893452.1| - 1.5e-34 119.2 0.1 6e-34 117.3 0.1 1.9 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|352682928|ref|YP_004893452.1| - 2.4e-26 92.1 0.0 4.1e-26 91.3 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|352682928|ref|YP_004893452.1| - 3e-05 24.3 0.0 5.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 gi|352682929|ref|YP_004893453.1| - 1.1e-33 116.6 0.2 3e-33 115.2 0.2 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|352682929|ref|YP_004893453.1| - 5.2e-11 42.3 1.9 2.4e-07 30.2 1.8 2.7 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|352682929|ref|YP_004893453.1| - 2.9e-07 30.4 0.5 4.1e-06 26.7 0.5 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|352682929|ref|YP_004893453.1| - 7.9e-06 25.0 0.0 9e-06 24.8 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component tRNA-synt_1b PF00579.25 gi|352682930|ref|YP_004893454.1| - 3.5e-37 128.3 0.0 8.2e-35 120.5 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DAHP_synth_1 PF00793.20 gi|352682931|ref|YP_004893455.1| - 6.8e-71 238.3 0.0 8.7e-71 238.0 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|352682931|ref|YP_004893455.1| - 4.5e-08 32.8 0.0 7.1e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 NeuB family Ish1 PF10281.9 gi|352682931|ref|YP_004893455.1| - 0.094 13.0 0.1 2.9 8.3 0.0 2.8 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein TilS_C PF11734.8 gi|352682931|ref|YP_004893455.1| - 0.13 11.7 0.2 0.47 9.9 0.0 2.0 2 0 0 2 2 2 0 TilS substrate C-terminal domain TPP_enzyme_C PF02775.21 gi|352682932|ref|YP_004893456.1| - 4.5e-28 98.0 0.0 7.9e-28 97.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|352682932|ref|YP_004893456.1| - 1.1e-20 73.5 0.8 2.1e-20 72.6 0.8 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|352682933|ref|YP_004893457.1| - 2.2e-52 178.1 0.1 3.7e-52 177.4 0.1 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|352682933|ref|YP_004893457.1| - 1.1e-34 120.1 0.0 3.8e-34 118.3 0.0 1.9 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|352682933|ref|YP_004893457.1| - 7.5e-09 35.8 0.1 2.6e-07 30.9 0.0 2.8 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|352682933|ref|YP_004893457.1| - 0.033 13.8 0.3 0.078 12.6 0.3 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Gpr1_Fun34_YaaH PF01184.19 gi|352682934|ref|YP_004893458.1| - 4.5e-35 121.2 36.0 1.4e-34 119.6 36.0 1.6 1 1 0 1 1 1 1 GPR1/FUN34/yaaH family AMP-binding PF00501.28 gi|352682935|ref|YP_004893459.1| - 4.2e-94 315.5 0.0 5.1e-94 315.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|352682935|ref|YP_004893459.1| - 3.9e-29 101.5 0.4 3.4e-28 98.4 0.1 2.3 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|352682935|ref|YP_004893459.1| - 5.8e-22 77.4 1.8 5.8e-22 77.4 1.8 2.2 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus FBPase_3 PF01950.16 gi|352682936|ref|YP_004893460.1| - 1.9e-175 583.3 0.0 2.3e-175 583.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Acetyltransf_3 PF13302.7 gi|352682937|ref|YP_004893461.1| - 2.9e-06 28.0 0.0 4e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|352682937|ref|YP_004893461.1| - 0.00043 20.5 0.1 0.00054 20.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|352682937|ref|YP_004893461.1| - 0.0067 16.8 0.0 0.012 16.0 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Fumerase_C PF05683.12 gi|352682938|ref|YP_004893462.1| - 2.5e-49 167.4 0.2 3e-49 167.1 0.2 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Fumerase PF05681.14 gi|352682939|ref|YP_004893463.1| - 7.4e-84 281.4 0.0 8.4e-84 281.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) RHH_1 PF01402.21 gi|352682940|ref|YP_004893464.1| - 7.1e-08 32.1 0.1 7.1e-08 32.1 0.1 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|352682940|ref|YP_004893464.1| - 0.0033 17.6 0.0 0.0039 17.4 0.0 1.2 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ThiS PF02597.20 gi|352682941|ref|YP_004893465.1| - 2.3e-18 66.6 0.0 2.7e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|352682941|ref|YP_004893465.1| - 0.00041 20.3 0.3 0.91 9.6 0.0 2.5 2 1 1 3 3 3 2 TGS domain Urm1 PF09138.11 gi|352682941|ref|YP_004893465.1| - 0.0014 19.0 0.0 0.0014 18.9 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) EF-hand_8 PF13833.6 gi|352682941|ref|YP_004893465.1| - 0.046 13.6 0.0 0.078 12.8 0.0 1.4 1 0 0 1 1 1 0 EF-hand domain pair BAT PF15915.5 gi|352682941|ref|YP_004893465.1| - 0.047 13.6 0.1 0.067 13.1 0.1 1.2 1 0 0 1 1 1 0 GAF and HTH_10 associated domain EF-hand_5 PF13202.6 gi|352682941|ref|YP_004893465.1| - 0.084 12.4 0.0 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 EF hand ThiS-like PF14453.6 gi|352682941|ref|YP_004893465.1| - 0.13 12.3 0.2 1.3 9.1 0.1 2.5 2 1 0 2 2 2 0 ThiS-like ubiquitin Ubiquitin_4 PF18036.1 gi|352682941|ref|YP_004893465.1| - 0.14 12.2 0.0 0.38 10.8 0.0 1.8 2 1 0 2 2 2 0 Ubiquitin-like domain Peptidase_C30 PF05409.13 gi|352682941|ref|YP_004893465.1| - 0.18 11.0 0.0 0.21 10.9 0.0 1.1 1 0 0 1 1 1 0 Coronavirus endopeptidase C30 AFOR_C PF01314.18 gi|352682942|ref|YP_004893466.1| - 4.4e-112 374.8 0.0 5.8e-112 374.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|352682942|ref|YP_004893466.1| - 1.1e-69 234.3 0.2 2.1e-69 233.4 0.2 1.5 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain ThiS PF02597.20 gi|352682943|ref|YP_004893467.1| - 1.2e-10 41.8 0.0 1.5e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|352682943|ref|YP_004893467.1| - 0.014 15.5 0.4 0.23 11.5 0.4 2.1 1 1 0 1 1 1 0 TGS domain Urm1 PF09138.11 gi|352682943|ref|YP_004893467.1| - 0.026 14.9 0.5 0.03 14.6 0.5 1.2 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) IlvN PF07991.12 gi|352682944|ref|YP_004893468.1| - 1.8e-44 151.2 0.1 2.9e-44 150.6 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|352682944|ref|YP_004893468.1| - 7.6e-24 84.6 0.0 1.1e-23 84.2 0.0 1.1 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|352682944|ref|YP_004893468.1| - 1.8e-08 34.9 0.0 4.2e-08 33.7 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|352682944|ref|YP_004893468.1| - 4.8e-07 29.3 0.0 1.3e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|352682944|ref|YP_004893468.1| - 8.5e-07 29.3 0.0 1.5e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|352682944|ref|YP_004893468.1| - 0.00068 19.7 0.0 0.0012 18.9 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Rossmann-like PF10727.9 gi|352682944|ref|YP_004893468.1| - 0.016 15.0 1.3 0.039 13.8 0.0 2.0 2 0 0 2 2 2 0 Rossmann-like domain 3HCDH_N PF02737.18 gi|352682944|ref|YP_004893468.1| - 0.022 14.6 0.0 0.044 13.7 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|352682944|ref|YP_004893468.1| - 0.095 13.0 0.0 0.26 11.5 0.0 1.8 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|352682944|ref|YP_004893468.1| - 0.11 12.9 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 gi|352682944|ref|YP_004893468.1| - 0.13 12.2 0.1 2.5 8.1 0.1 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PTPS PF01242.19 gi|352682945|ref|YP_004893469.1| - 3.5e-07 30.2 0.0 4.2e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase AGOG PF09171.10 gi|352682946|ref|YP_004893470.1| - 1.4e-05 24.5 0.0 2.3e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase EndIII_4Fe-2S PF10576.9 gi|352682946|ref|YP_004893470.1| - 0.00079 19.7 5.3 0.0015 18.8 5.3 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HTH_10 PF04967.12 gi|352682946|ref|YP_004893470.1| - 0.035 13.9 0.0 7 6.5 0.0 2.7 2 0 0 2 2 2 0 HTH DNA binding domain DUF4199 PF13858.6 gi|352682947|ref|YP_004893471.1| - 0.0029 18.0 0.3 0.0029 18.0 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) CTP_transf_1 PF01148.20 gi|352682947|ref|YP_004893471.1| - 0.035 13.9 2.4 0.035 13.9 2.4 1.6 1 1 0 1 1 1 0 Cytidylyltransferase family DUF1761 PF08570.10 gi|352682947|ref|YP_004893471.1| - 0.041 14.1 3.1 0.11 12.8 0.1 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1761) IlvC PF01450.19 gi|352682947|ref|YP_004893471.1| - 0.14 12.5 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF4282 PF14110.6 gi|352682947|ref|YP_004893471.1| - 0.44 11.3 5.4 0.62 10.8 3.9 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) Romo1 PF10247.9 gi|352682947|ref|YP_004893471.1| - 1.5 9.2 5.3 1.8 9.0 0.1 2.9 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 Bacteriocin_IIc PF10439.9 gi|352682947|ref|YP_004893471.1| - 8.1 6.6 15.2 0.52 10.5 2.0 3.0 3 0 0 3 3 3 0 Bacteriocin class II with double-glycine leader peptide DUF711 PF05167.12 gi|352682948|ref|YP_004893472.1| - 1.2e-35 123.3 0.0 2.1e-35 122.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Peripla_BP_2 PF01497.18 gi|352682949|ref|YP_004893473.1| - 4.3e-10 39.5 0.1 9e-10 38.5 0.1 1.5 1 1 0 1 1 1 1 Periplasmic binding protein UDPG_MGDP_dh_N PF03721.14 gi|352682951|ref|YP_004893475.1| - 1.7e-36 125.5 0.3 3.4e-36 124.6 0.3 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|352682951|ref|YP_004893475.1| - 6.2e-27 94.1 0.0 1.7e-26 92.7 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|352682951|ref|YP_004893475.1| - 2.1e-21 75.9 0.0 4.2e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain F420_oxidored PF03807.17 gi|352682951|ref|YP_004893475.1| - 7.8e-05 23.2 3.9 0.31 11.7 0.0 4.5 4 1 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|352682951|ref|YP_004893475.1| - 0.0016 18.6 0.3 0.039 14.1 0.2 2.8 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|352682951|ref|YP_004893475.1| - 0.016 15.4 2.4 0.42 10.9 0.3 3.0 3 0 0 3 3 3 0 TrkA-N domain 3HCDH_N PF02737.18 gi|352682951|ref|YP_004893475.1| - 0.048 13.5 0.9 0.1 12.5 0.5 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|352682951|ref|YP_004893475.1| - 0.056 13.5 0.1 5.3 7.1 0.4 2.3 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|352682951|ref|YP_004893475.1| - 0.056 12.8 0.1 2.8 7.3 0.1 2.5 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4777 PF16007.5 gi|352682951|ref|YP_004893475.1| - 0.081 13.2 0.0 0.25 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4777) ADH_zinc_N PF00107.26 gi|352682951|ref|YP_004893475.1| - 0.088 12.8 0.9 0.38 10.8 0.3 2.3 3 0 0 3 3 3 0 Zinc-binding dehydrogenase Urocanase PF01175.18 gi|352682951|ref|YP_004893475.1| - 0.18 11.4 0.4 0.52 9.9 0.3 1.8 2 0 0 2 2 2 0 Urocanase Rossmann-like domain Rossmann-like PF10727.9 gi|352682951|ref|YP_004893475.1| - 0.89 9.4 4.3 0.95 9.3 0.1 2.8 4 0 0 4 4 4 0 Rossmann-like domain BPD_transp_1 PF00528.22 gi|352682952|ref|YP_004893476.1| - 4.1e-19 69.0 20.7 4.1e-19 69.0 20.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|352682953|ref|YP_004893477.1| - 2.5e-14 53.4 21.9 2.5e-14 53.4 21.9 2.3 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|352682953|ref|YP_004893477.1| - 0.0011 19.0 3.2 0.0027 17.8 3.2 1.6 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters SBP_bac_8 PF13416.6 gi|352682954|ref|YP_004893478.1| - 6.2e-23 82.0 9.6 9.6e-23 81.4 9.6 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|352682954|ref|YP_004893478.1| - 1.5e-15 57.9 8.9 2.4e-15 57.3 8.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Polyoma_coat PF00718.20 gi|352682954|ref|YP_004893478.1| - 0.01 15.2 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 Polyomavirus coat protein SpoIIIAH PF12685.7 gi|352682954|ref|YP_004893478.1| - 0.075 12.8 0.2 0.14 12.0 0.2 1.3 1 0 0 1 1 1 0 SpoIIIAH-like protein Shisa PF13908.6 gi|352682954|ref|YP_004893478.1| - 0.17 12.1 3.3 0.33 11.2 3.3 1.4 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Mucin PF01456.17 gi|352682954|ref|YP_004893478.1| - 7 6.6 25.5 14 5.7 25.5 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein Glyco_hydro_57 PF03065.15 gi|352682955|ref|YP_004893479.1| - 2.6e-41 141.9 0.1 7e-34 117.5 0.0 2.3 1 1 1 2 2 2 2 Glycosyl hydrolase family 57 POR PF01558.18 gi|352682956|ref|YP_004893480.1| - 4.1e-25 88.8 2.7 1.4e-24 87.2 2.7 1.7 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase 5_3_exonuc PF01367.20 gi|352682956|ref|YP_004893480.1| - 0.12 13.0 0.1 9.7 6.9 0.0 2.2 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold zf-C2H2_11 PF16622.5 gi|352682957|ref|YP_004893481.1| - 0.023 14.4 0.3 0.035 13.9 0.3 1.2 1 0 0 1 1 1 0 zinc-finger C2H2-type NS3_envE PF02723.14 gi|352682957|ref|YP_004893481.1| - 0.033 14.3 1.0 0.43 10.7 0.1 2.1 1 1 1 2 2 2 0 Non-structural protein NS3/Small envelope protein E Fer4 PF00037.27 gi|352682958|ref|YP_004893482.1| - 1e-13 50.4 16.6 1.9e-07 30.6 5.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352682958|ref|YP_004893482.1| - 4.3e-11 42.8 8.9 5.1e-11 42.5 8.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352682958|ref|YP_004893482.1| - 3.9e-10 39.3 13.2 2.5e-05 24.1 3.6 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|352682958|ref|YP_004893482.1| - 3e-09 37.3 8.4 4.4e-09 36.8 8.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352682958|ref|YP_004893482.1| - 3.2e-08 33.6 8.0 4.5e-08 33.1 8.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352682958|ref|YP_004893482.1| - 5e-08 32.6 10.2 0.00056 19.8 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|352682958|ref|YP_004893482.1| - 5.7e-08 33.6 8.4 0.00099 20.0 2.6 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|352682958|ref|YP_004893482.1| - 3.2e-07 30.4 20.8 7.1e-05 22.8 10.9 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352682958|ref|YP_004893482.1| - 0.00013 22.6 10.6 0.15 12.8 3.3 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|352682958|ref|YP_004893482.1| - 0.0003 21.2 10.5 0.024 15.0 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|352682958|ref|YP_004893482.1| - 0.00036 21.0 12.0 0.0041 17.6 1.6 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|352682958|ref|YP_004893482.1| - 0.0011 19.4 10.9 0.13 12.9 1.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352682958|ref|YP_004893482.1| - 0.0016 18.8 11.4 0.028 14.9 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|352682958|ref|YP_004893482.1| - 0.026 15.3 11.0 0.18 12.7 2.1 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|352682958|ref|YP_004893482.1| - 0.24 11.6 8.0 0.76 10.0 8.0 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|352682958|ref|YP_004893482.1| - 3.6 7.8 8.2 1.1 9.4 3.6 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR_N PF01855.19 gi|352682959|ref|YP_004893483.1| - 3.6e-70 236.3 0.1 4.8e-70 235.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|352682959|ref|YP_004893483.1| - 5.2e-27 94.1 0.2 1e-26 93.2 0.2 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|352682959|ref|YP_004893483.1| - 2.5e-06 27.4 0.0 5e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|352682960|ref|YP_004893484.1| - 5.8e-23 81.4 0.2 9e-23 80.7 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|352682960|ref|YP_004893484.1| - 0.00036 19.8 0.1 0.0005 19.4 0.1 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Aldedh PF00171.22 gi|352682961|ref|YP_004893485.1| - 5.3e-149 496.7 0.0 7.1e-149 496.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Thy1 PF02511.15 gi|352682964|ref|YP_004893488.1| - 1.4e-13 51.1 1.5 1.8e-13 50.7 1.5 1.2 1 0 0 1 1 1 1 Thymidylate synthase complementing protein HTH_45 PF14947.6 gi|352682965|ref|YP_004893489.1| - 1.9e-06 27.8 0.0 2e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.6 gi|352682965|ref|YP_004893489.1| - 0.0025 17.5 0.1 0.0057 16.4 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain DUF4364 PF14277.6 gi|352682965|ref|YP_004893489.1| - 0.0059 16.4 0.0 0.0074 16.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|352682965|ref|YP_004893489.1| - 0.0079 16.1 0.1 0.01 15.7 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|352682965|ref|YP_004893489.1| - 0.012 15.7 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|352682965|ref|YP_004893489.1| - 0.018 15.2 0.0 0.036 14.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain SLH PF00395.20 gi|352682965|ref|YP_004893489.1| - 0.11 12.6 0.0 0.26 11.3 0.0 1.8 2 0 0 2 2 2 0 S-layer homology domain HTH_3 PF01381.22 gi|352682968|ref|YP_004893492.1| - 8.5e-16 57.8 0.5 1.7e-15 56.8 0.1 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|352682968|ref|YP_004893492.1| - 8.4e-15 54.9 0.1 2.2e-14 53.5 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|352682968|ref|YP_004893492.1| - 2.2e-11 43.6 0.0 6.7e-11 42.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|352682968|ref|YP_004893492.1| - 1.2e-09 38.5 0.0 2.3e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_25 PF13413.6 gi|352682968|ref|YP_004893492.1| - 3.2e-05 23.7 0.2 9.4e-05 22.2 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|352682968|ref|YP_004893492.1| - 0.00011 22.0 0.1 0.00068 19.5 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_35 PF13693.6 gi|352682968|ref|YP_004893492.1| - 0.00013 21.9 0.1 0.00029 20.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_psq PF05225.16 gi|352682968|ref|YP_004893492.1| - 0.0024 17.6 0.0 0.0075 16.0 0.0 1.8 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_IclR PF09339.10 gi|352682968|ref|YP_004893492.1| - 0.01 15.6 0.1 0.029 14.2 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|352682968|ref|YP_004893492.1| - 0.022 14.3 0.2 0.05 13.2 0.2 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Cupin_2 PF07883.11 gi|352682968|ref|YP_004893492.1| - 0.055 13.2 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Cupin domain LysM PF01476.20 gi|352682968|ref|YP_004893492.1| - 0.085 12.9 0.0 3.7 7.7 0.0 2.5 2 0 0 2 2 2 0 LysM domain HTH_20 PF12840.7 gi|352682968|ref|YP_004893492.1| - 0.11 12.6 0.1 0.37 10.9 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|352682968|ref|YP_004893492.1| - 0.13 12.1 0.2 0.57 10.1 0.1 2.1 2 0 0 2 2 2 0 Homeodomain-like domain HTH_10 PF04967.12 gi|352682968|ref|YP_004893492.1| - 0.14 12.0 0.0 0.48 10.3 0.0 1.9 1 0 0 1 1 1 0 HTH DNA binding domain EamA PF00892.20 gi|352682969|ref|YP_004893493.1| - 3.1e-30 105.1 46.9 2.2e-21 76.5 20.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family GTP_EFTU PF00009.27 gi|352682971|ref|YP_004893495.1| - 8.4e-22 77.7 0.1 1.7e-20 73.4 0.1 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|352682971|ref|YP_004893495.1| - 5.5e-17 61.8 0.2 1.2e-16 60.8 0.2 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|352682971|ref|YP_004893495.1| - 4.6e-07 30.1 0.5 1.1e-06 28.9 0.1 1.9 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|352682971|ref|YP_004893495.1| - 0.00052 20.1 0.0 0.0029 17.7 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|352682971|ref|YP_004893495.1| - 0.0064 16.0 0.2 1.7 8.2 0.1 2.7 2 1 0 2 2 2 2 Ferrous iron transport protein B ProQ_C PF17516.2 gi|352682971|ref|YP_004893495.1| - 0.0071 15.8 0.1 0.015 14.7 0.1 1.6 1 0 0 1 1 1 1 ProQ C-terminal domain SRPRB PF09439.10 gi|352682971|ref|YP_004893495.1| - 0.026 13.9 0.1 0.62 9.5 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|352682971|ref|YP_004893495.1| - 0.15 11.9 0.1 0.49 10.3 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase HSBP1 PF06825.12 gi|352682972|ref|YP_004893496.1| - 1.4e-10 40.8 27.4 0.0071 16.2 1.4 5.4 1 1 4 5 5 5 5 Heat shock factor binding protein 1 DUF948 PF06103.11 gi|352682972|ref|YP_004893496.1| - 2.8e-08 33.9 4.0 0.00019 21.7 0.6 2.5 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|352682972|ref|YP_004893496.1| - 5.4e-07 29.7 10.3 0.00025 21.1 3.7 2.8 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) MscS_porin PF12795.7 gi|352682972|ref|YP_004893496.1| - 5.8e-07 29.3 6.8 2.8e-06 27.1 2.3 2.1 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain TPR_MLP1_2 PF07926.12 gi|352682972|ref|YP_004893496.1| - 6.1e-07 29.6 5.9 2.4e-05 24.4 1.4 2.4 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Snapin_Pallidin PF14712.6 gi|352682972|ref|YP_004893496.1| - 7.8e-07 29.4 9.4 0.0004 20.7 3.4 2.2 1 1 1 2 2 2 2 Snapin/Pallidin FliD_C PF07195.12 gi|352682972|ref|YP_004893496.1| - 1.1e-06 28.3 8.1 0.00051 19.5 3.9 2.9 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus NPV_P10 PF05531.12 gi|352682972|ref|YP_004893496.1| - 1.5e-06 28.6 11.4 0.0015 19.0 3.1 3.1 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein XhlA PF10779.9 gi|352682972|ref|YP_004893496.1| - 1.9e-06 28.0 20.3 0.009 16.2 2.8 3.3 1 1 2 3 3 3 3 Haemolysin XhlA ApoLp-III PF07464.11 gi|352682972|ref|YP_004893496.1| - 2.6e-06 27.6 4.9 3.3e-05 24.0 0.9 2.3 1 1 1 2 2 2 2 Apolipophorin-III precursor (apoLp-III) MCPsignal PF00015.21 gi|352682972|ref|YP_004893496.1| - 2.8e-06 27.2 3.5 4.3e-06 26.6 3.5 1.3 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain BLOC1_2 PF10046.9 gi|352682972|ref|YP_004893496.1| - 3.3e-06 27.3 6.3 0.031 14.6 1.4 2.8 1 1 1 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|352682972|ref|YP_004893496.1| - 3.4e-06 27.2 4.0 0.0015 18.6 0.5 2.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|352682972|ref|YP_004893496.1| - 4.7e-06 26.6 14.9 9.2e-06 25.7 8.9 2.4 2 1 0 2 2 1 1 Apolipoprotein A1/A4/E domain Tropomyosin_1 PF12718.7 gi|352682972|ref|YP_004893496.1| - 8.1e-06 26.1 9.7 1.6e-05 25.1 9.7 1.5 1 1 0 1 1 1 1 Tropomyosin like Lebercilin PF15619.6 gi|352682972|ref|YP_004893496.1| - 9.4e-06 25.4 19.6 0.00027 20.7 7.7 2.0 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease DUF3552 PF12072.8 gi|352682972|ref|YP_004893496.1| - 1e-05 25.1 14.9 0.002 17.6 4.2 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) TMF_TATA_bd PF12325.8 gi|352682972|ref|YP_004893496.1| - 1.2e-05 25.5 7.1 1.4e-05 25.3 2.0 2.3 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding Tropomyosin PF00261.20 gi|352682972|ref|YP_004893496.1| - 1.8e-05 24.3 31.7 0.00088 18.7 13.1 1.9 1 1 1 2 2 2 2 Tropomyosin AAA_13 PF13166.6 gi|352682972|ref|YP_004893496.1| - 2.6e-05 23.1 7.1 6.4e-05 21.8 7.1 1.5 1 1 0 1 1 1 1 AAA domain Tektin PF03148.14 gi|352682972|ref|YP_004893496.1| - 3.2e-05 22.9 12.5 0.0014 17.5 3.9 2.2 1 1 1 2 2 2 2 Tektin family Spectrin PF00435.21 gi|352682972|ref|YP_004893496.1| - 3.6e-05 24.2 5.2 0.03 14.8 0.9 2.2 1 1 0 2 2 2 2 Spectrin repeat FlaC_arch PF05377.11 gi|352682972|ref|YP_004893496.1| - 3.8e-05 24.0 10.0 0.56 10.7 0.1 3.5 1 1 2 3 3 3 1 Flagella accessory protein C (FlaC) Golgin_A5 PF09787.9 gi|352682972|ref|YP_004893496.1| - 3.9e-05 23.3 8.7 5e-05 22.9 8.7 1.0 1 0 0 1 1 1 1 Golgin subfamily A member 5 HMMR_N PF15905.5 gi|352682972|ref|YP_004893496.1| - 4e-05 23.3 6.8 4.7e-05 23.0 6.8 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal IFT57 PF10498.9 gi|352682972|ref|YP_004893496.1| - 5e-05 22.4 4.6 0.00025 20.2 4.6 1.8 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 Exonuc_VII_L PF02601.15 gi|352682972|ref|YP_004893496.1| - 5.4e-05 22.9 2.3 6.4e-05 22.7 2.3 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit Seryl_tRNA_N PF02403.22 gi|352682972|ref|YP_004893496.1| - 6.4e-05 23.1 20.4 0.0018 18.5 6.1 2.5 1 1 1 2 2 2 2 Seryl-tRNA synthetase N-terminal domain TMF_DNA_bd PF12329.8 gi|352682972|ref|YP_004893496.1| - 7.3e-05 22.7 12.9 0.41 10.7 0.3 4.0 1 1 2 3 3 3 1 TATA element modulatory factor 1 DNA binding DUF4988 PF16378.5 gi|352682972|ref|YP_004893496.1| - 8.3e-05 22.3 11.7 0.12 12.1 0.4 3.1 1 1 2 3 3 3 2 Domain of unknown function Nup88 PF10168.9 gi|352682972|ref|YP_004893496.1| - 9.9e-05 20.4 5.8 0.00013 20.0 5.8 1.1 1 0 0 1 1 1 1 Nuclear pore component Prefoldin PF02996.17 gi|352682972|ref|YP_004893496.1| - 0.0001 22.2 9.8 0.088 12.7 0.8 3.2 1 1 2 3 3 3 2 Prefoldin subunit Laminin_II PF06009.12 gi|352682972|ref|YP_004893496.1| - 0.0001 22.3 10.1 0.00024 21.1 8.0 2.5 1 1 1 2 2 1 1 Laminin Domain II DUF3450 PF11932.8 gi|352682972|ref|YP_004893496.1| - 0.00012 21.5 8.2 0.00049 19.5 3.4 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) DUF16 PF01519.16 gi|352682972|ref|YP_004893496.1| - 0.00012 22.5 8.6 0.019 15.4 8.6 2.4 1 1 0 1 1 1 1 Protein of unknown function DUF16 CdvA PF18822.1 gi|352682972|ref|YP_004893496.1| - 0.00013 21.8 14.1 0.0015 18.3 4.2 2.6 2 1 1 3 3 2 2 CdvA-like coiled-coil domain KxDL PF10241.9 gi|352682972|ref|YP_004893496.1| - 0.00013 22.2 6.6 0.01 16.1 0.8 2.4 1 1 1 2 2 2 2 Uncharacterized conserved protein DUF4407 PF14362.6 gi|352682972|ref|YP_004893496.1| - 0.00014 21.4 6.0 0.00019 20.9 6.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Uds1 PF15456.6 gi|352682972|ref|YP_004893496.1| - 0.00014 22.0 9.6 0.00081 19.6 9.6 2.6 1 1 0 1 1 1 1 Up-regulated During Septation Prefoldin_2 PF01920.20 gi|352682972|ref|YP_004893496.1| - 0.00015 21.7 9.8 0.13 12.2 0.2 3.4 2 1 2 4 4 3 2 Prefoldin subunit COG6 PF06419.11 gi|352682972|ref|YP_004893496.1| - 0.00015 20.1 4.6 0.027 12.7 0.2 2.6 1 1 2 3 3 3 2 Conserved oligomeric complex COG6 TMPIT PF07851.13 gi|352682972|ref|YP_004893496.1| - 0.00015 21.1 0.9 0.0002 20.8 0.9 1.3 1 0 0 1 1 1 1 TMPIT-like protein Vps51 PF08700.11 gi|352682972|ref|YP_004893496.1| - 0.00017 21.6 3.4 0.85 9.7 0.0 3.3 2 1 1 3 3 3 0 Vps51/Vps67 TBCC_N PF16752.5 gi|352682972|ref|YP_004893496.1| - 0.00018 21.9 3.8 0.17 12.3 0.3 2.4 1 1 1 2 2 2 2 Tubulin-specific chaperone C N-terminal domain Matrilin_ccoil PF10393.9 gi|352682972|ref|YP_004893496.1| - 0.00019 21.2 5.6 0.28 11.1 0.1 3.9 3 1 0 3 3 3 1 Trimeric coiled-coil oligomerisation domain of matrilin GAS PF13851.6 gi|352682972|ref|YP_004893496.1| - 0.00019 20.8 7.9 0.0073 15.7 1.2 2.1 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding MAD PF05557.13 gi|352682972|ref|YP_004893496.1| - 0.00021 19.8 8.0 0.00029 19.4 8.0 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein CLZ PF16526.5 gi|352682972|ref|YP_004893496.1| - 0.00022 21.5 9.7 0.025 14.9 2.2 3.1 1 1 1 2 2 2 2 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HrpB7 PF09486.10 gi|352682972|ref|YP_004893496.1| - 0.00022 21.6 15.4 0.00045 20.6 6.8 2.7 1 1 2 3 3 3 1 Bacterial type III secretion protein (HrpB7) Atg14 PF10186.9 gi|352682972|ref|YP_004893496.1| - 0.00023 20.4 6.3 0.00027 20.1 6.3 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Fib_alpha PF08702.10 gi|352682972|ref|YP_004893496.1| - 0.00023 21.4 7.0 0.0023 18.1 6.0 2.3 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family Spc7 PF08317.11 gi|352682972|ref|YP_004893496.1| - 0.00023 20.2 9.6 0.003 16.5 9.1 2.0 1 1 0 1 1 1 1 Spc7 kinetochore protein Laminin_I PF06008.14 gi|352682972|ref|YP_004893496.1| - 0.00027 20.8 7.4 0.0023 17.7 7.5 2.0 1 1 0 1 1 1 1 Laminin Domain I MbeD_MobD PF04899.12 gi|352682972|ref|YP_004893496.1| - 0.00032 20.7 1.5 1.2 9.3 0.4 3.3 1 1 2 3 3 3 0 MbeD/MobD like FlxA PF14282.6 gi|352682972|ref|YP_004893496.1| - 0.00041 20.3 1.7 0.052 13.5 0.3 2.3 1 1 1 2 2 2 2 FlxA-like protein RmuC PF02646.16 gi|352682972|ref|YP_004893496.1| - 0.00048 19.3 3.5 0.19 10.8 0.5 2.3 1 1 1 2 2 2 2 RmuC family FH2 PF02181.23 gi|352682972|ref|YP_004893496.1| - 0.00051 19.3 2.0 0.00083 18.6 1.3 1.7 1 1 1 2 2 1 1 Formin Homology 2 Domain bZIP_1 PF00170.21 gi|352682972|ref|YP_004893496.1| - 0.00054 20.0 2.3 3.1 8.0 0.3 3.3 1 1 2 3 3 3 0 bZIP transcription factor DivIC PF04977.15 gi|352682972|ref|YP_004893496.1| - 0.00058 19.6 14.7 0.052 13.3 1.2 3.5 1 1 2 3 3 3 2 Septum formation initiator Sec5 PF15469.6 gi|352682972|ref|YP_004893496.1| - 0.00061 19.7 5.9 0.013 15.3 2.4 2.1 1 1 1 2 2 2 1 Exocyst complex component Sec5 ABC_tran_CTD PF16326.5 gi|352682972|ref|YP_004893496.1| - 0.00062 20.0 7.1 0.037 14.3 1.0 3.0 1 1 2 3 3 3 1 ABC transporter C-terminal domain Transcrip_act PF04949.13 gi|352682972|ref|YP_004893496.1| - 0.00062 19.7 14.9 0.18 11.7 4.1 2.5 1 1 1 2 2 2 2 Transcriptional activator CENP-H PF05837.12 gi|352682972|ref|YP_004893496.1| - 0.00064 20.1 9.0 0.085 13.3 1.9 2.3 1 1 1 2 2 2 2 Centromere protein H (CENP-H) DUF4200 PF13863.6 gi|352682972|ref|YP_004893496.1| - 0.00068 20.0 10.8 0.059 13.8 3.1 2.9 1 1 1 2 2 2 2 Domain of unknown function (DUF4200) EzrA PF06160.12 gi|352682972|ref|YP_004893496.1| - 0.00075 17.8 7.3 0.0013 17.0 7.3 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF4763 PF15960.5 gi|352682972|ref|YP_004893496.1| - 0.00079 18.8 4.9 0.0025 17.2 0.6 2.1 1 1 0 2 2 2 1 Domain of unknown function (DUF4763) DUF2203 PF09969.9 gi|352682972|ref|YP_004893496.1| - 0.0011 19.7 5.8 0.014 16.2 0.9 2.3 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2203) TRPM_tetra PF16519.5 gi|352682972|ref|YP_004893496.1| - 0.0011 19.0 11.2 0.38 10.9 0.3 3.6 1 1 2 3 3 3 1 Tetramerisation domain of TRPM DivIVA PF05103.13 gi|352682972|ref|YP_004893496.1| - 0.0012 19.0 7.4 0.5 10.5 0.8 3.2 1 1 2 3 3 3 1 DivIVA protein DUF2802 PF10975.8 gi|352682972|ref|YP_004893496.1| - 0.0012 18.9 7.3 4.2 7.6 0.4 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF2802) WXG100 PF06013.12 gi|352682972|ref|YP_004893496.1| - 0.0013 19.0 2.9 0.59 10.4 0.3 3.3 1 1 1 2 2 2 1 Proteins of 100 residues with WXG DUF3584 PF12128.8 gi|352682972|ref|YP_004893496.1| - 0.0013 16.4 5.4 0.0015 16.2 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Mce4_CUP1 PF11887.8 gi|352682972|ref|YP_004893496.1| - 0.0013 18.2 0.2 0.023 14.2 0.2 2.0 1 1 0 1 1 1 1 Cholesterol uptake porter CUP1 of Mce4, putative Nup54 PF13874.6 gi|352682972|ref|YP_004893496.1| - 0.0014 18.7 7.1 0.015 15.4 2.9 2.4 1 1 2 3 3 3 1 Nucleoporin complex subunit 54 GCN5L1 PF06320.13 gi|352682972|ref|YP_004893496.1| - 0.0016 18.6 1.4 2.5 8.3 0.3 2.7 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Occludin_ELL PF07303.13 gi|352682972|ref|YP_004893496.1| - 0.0017 19.1 3.4 0.76 10.5 1.2 2.9 1 1 1 2 2 2 0 Occludin homology domain MtrB PF05440.12 gi|352682972|ref|YP_004893496.1| - 0.0018 18.7 4.2 4.2 7.9 0.0 3.8 1 1 3 5 5 4 0 Tetrahydromethanopterin S-methyltransferase subunit B FemAB PF02388.16 gi|352682972|ref|YP_004893496.1| - 0.002 17.1 4.0 0.01 14.8 0.7 2.0 1 1 1 2 2 2 1 FemAB family CENP-F_leu_zip PF10473.9 gi|352682972|ref|YP_004893496.1| - 0.002 18.2 11.0 0.16 12.0 2.9 2.7 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Rho_Binding PF08912.11 gi|352682972|ref|YP_004893496.1| - 0.002 18.9 5.7 3.5 8.5 0.2 3.6 2 1 2 4 4 3 0 Rho Binding DASH_Duo1 PF08651.10 gi|352682972|ref|YP_004893496.1| - 0.002 17.8 4.2 2.3 8.1 0.2 3.4 1 1 2 3 3 3 0 DASH complex subunit Duo1 Csm1_N PF18504.1 gi|352682972|ref|YP_004893496.1| - 0.0024 18.2 9.8 0.49 10.8 0.3 3.6 1 1 2 3 3 3 1 Csm1 N-terminal domain Allexi_40kDa PF05549.11 gi|352682972|ref|YP_004893496.1| - 0.0024 17.4 3.2 0.016 14.8 3.2 1.9 1 1 0 1 1 1 1 Allexivirus 40kDa protein DHR10 PF18595.1 gi|352682972|ref|YP_004893496.1| - 0.0024 17.9 12.3 0.08 13.0 4.9 2.9 1 1 1 2 2 2 2 Designed helical repeat protein 10 domain Leu_zip PF15294.6 gi|352682972|ref|YP_004893496.1| - 0.003 17.1 6.4 0.0043 16.6 6.4 1.1 1 0 0 1 1 1 1 Leucine zipper V_ATPase_I PF01496.19 gi|352682972|ref|YP_004893496.1| - 0.0031 15.5 5.0 0.0058 14.6 4.3 1.6 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family COG2 PF06148.11 gi|352682972|ref|YP_004893496.1| - 0.0032 17.6 7.3 0.026 14.6 0.9 2.7 1 1 2 3 3 2 1 COG (conserved oligomeric Golgi) complex component, COG2 RPW8 PF05659.11 gi|352682972|ref|YP_004893496.1| - 0.0037 17.0 8.5 0.027 14.2 1.4 2.9 1 1 2 3 3 3 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 Phage_Mu_Gam PF07352.12 gi|352682972|ref|YP_004893496.1| - 0.0038 17.1 6.5 0.17 11.8 0.8 3.0 1 1 2 3 3 3 1 Bacteriophage Mu Gam like protein DNA_repr_REX1B PF14966.6 gi|352682972|ref|YP_004893496.1| - 0.0038 17.8 1.2 1.5 9.5 0.1 3.1 1 1 2 3 3 3 0 DNA repair REX1-B Fmp27_WPPW PF10359.9 gi|352682972|ref|YP_004893496.1| - 0.004 16.1 8.7 0.03 13.2 2.4 2.0 1 1 1 2 2 2 2 RNA pol II promoter Fmp27 protein domain TelA PF05816.11 gi|352682972|ref|YP_004893496.1| - 0.0043 16.2 11.4 0.022 13.8 2.3 2.7 1 1 1 3 3 3 1 Toxic anion resistance protein (TelA) DUF4446 PF14584.6 gi|352682972|ref|YP_004893496.1| - 0.0047 16.9 5.6 0.056 13.4 0.9 2.5 1 1 2 3 3 3 1 Protein of unknown function (DUF4446) NBD94 PF16830.5 gi|352682972|ref|YP_004893496.1| - 0.005 17.2 8.8 0.26 11.7 0.3 2.4 1 1 1 2 2 2 1 Nucleotide-Binding Domain 94 of RH Mt_ATP-synt_D PF05873.12 gi|352682972|ref|YP_004893496.1| - 0.0052 16.6 1.4 0.81 9.5 0.3 2.4 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) FUSC PF04632.12 gi|352682972|ref|YP_004893496.1| - 0.0052 15.4 3.6 0.0064 15.1 3.6 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family Mod_r PF07200.13 gi|352682972|ref|YP_004893496.1| - 0.0061 16.7 4.1 0.007 16.5 2.6 1.9 2 1 0 2 2 1 1 Modifier of rudimentary (Mod(r)) protein T3SSipB PF16535.5 gi|352682972|ref|YP_004893496.1| - 0.0063 17.0 2.9 0.065 13.7 0.5 2.4 1 1 1 2 2 2 1 Type III cell invasion protein SipB APG6_N PF17675.1 gi|352682972|ref|YP_004893496.1| - 0.0064 17.0 9.1 0.062 13.8 3.3 2.1 1 1 1 2 2 2 2 Apg6 coiled-coil region Phage_GPO PF05929.11 gi|352682972|ref|YP_004893496.1| - 0.0066 16.1 2.8 0.016 14.9 1.5 1.8 1 1 1 2 2 2 2 Phage capsid scaffolding protein (GPO) serine peptidase DUF1351 PF07083.11 gi|352682972|ref|YP_004893496.1| - 0.0072 16.1 8.1 0.054 13.3 4.2 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1351) DUF5082 PF16888.5 gi|352682972|ref|YP_004893496.1| - 0.0074 16.6 7.2 0.053 13.8 0.7 2.5 1 1 0 2 2 2 1 Domain of unknown function (DUF5082) CREPT PF16566.5 gi|352682972|ref|YP_004893496.1| - 0.0075 16.4 5.8 0.017 15.3 5.5 1.6 1 1 1 2 2 2 1 Cell-cycle alteration and expression-elevated protein in tumour TACC_C PF05010.14 gi|352682972|ref|YP_004893496.1| - 0.0075 16.1 6.3 0.024 14.5 6.1 1.8 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Hemagglutinin PF00509.18 gi|352682972|ref|YP_004893496.1| - 0.0079 14.6 8.4 0.11 10.9 2.6 2.4 1 1 2 3 3 3 2 Haemagglutinin Taxilin PF09728.9 gi|352682972|ref|YP_004893496.1| - 0.0081 15.4 4.6 0.37 9.9 0.7 1.7 1 1 0 1 1 1 1 Myosin-like coiled-coil protein DUF148 PF02520.17 gi|352682972|ref|YP_004893496.1| - 0.0093 16.1 1.5 0.95 9.6 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF148 ISG65-75 PF11727.8 gi|352682972|ref|YP_004893496.1| - 0.0095 15.2 2.1 0.0095 15.2 2.1 1.8 1 1 1 2 2 2 1 Invariant surface glycoprotein Spc24 PF08286.11 gi|352682972|ref|YP_004893496.1| - 0.0097 16.1 7.7 39 4.5 7.7 3.1 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 YabA PF06156.13 gi|352682972|ref|YP_004893496.1| - 0.01 16.5 5.4 1.9 9.1 0.6 3.1 2 1 1 3 3 2 0 Initiation control protein YabA Jnk-SapK_ap_N PF09744.9 gi|352682972|ref|YP_004893496.1| - 0.011 16.0 6.9 0.48 10.6 2.3 1.9 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Zw10 PF06248.13 gi|352682972|ref|YP_004893496.1| - 0.011 14.4 5.5 0.11 11.0 1.8 1.8 1 1 1 2 2 2 0 Centromere/kinetochore Zw10 Prominin PF05478.11 gi|352682972|ref|YP_004893496.1| - 0.011 13.8 2.3 0.013 13.5 2.3 1.2 1 0 0 1 1 1 0 Prominin DUF812 PF05667.11 gi|352682972|ref|YP_004893496.1| - 0.011 14.7 7.6 0.29 10.0 7.7 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF2205 PF10224.9 gi|352682972|ref|YP_004893496.1| - 0.011 15.7 11.8 1.3 9.0 0.8 4.6 1 1 2 3 3 3 0 Short coiled-coil protein APG17 PF04108.12 gi|352682972|ref|YP_004893496.1| - 0.012 14.8 6.2 0.036 13.2 1.6 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 Ax_dynein_light PF10211.9 gi|352682972|ref|YP_004893496.1| - 0.012 15.5 8.3 0.17 11.8 2.3 2.5 1 1 2 3 3 3 0 Axonemal dynein light chain Phage_GP20 PF06810.11 gi|352682972|ref|YP_004893496.1| - 0.013 15.3 9.8 0.67 9.8 9.5 2.7 1 1 0 1 1 1 0 Phage minor structural protein GP20 Fzo_mitofusin PF04799.13 gi|352682972|ref|YP_004893496.1| - 0.014 15.0 5.0 0.34 10.4 1.0 2.5 1 1 1 2 2 2 0 fzo-like conserved region YkyA PF10368.9 gi|352682972|ref|YP_004893496.1| - 0.014 15.1 4.0 0.07 12.8 2.6 2.4 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein SesA PF17107.5 gi|352682972|ref|YP_004893496.1| - 0.014 15.6 3.1 0.38 11.0 0.2 2.6 1 1 2 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DUF1110 PF06533.12 gi|352682972|ref|YP_004893496.1| - 0.015 15.3 4.4 0.86 9.5 1.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1110) LMBR1 PF04791.16 gi|352682972|ref|YP_004893496.1| - 0.015 14.2 2.6 0.019 13.9 2.6 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein CorA PF01544.18 gi|352682972|ref|YP_004893496.1| - 0.017 14.5 14.4 0.14 11.4 14.4 2.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein SKA2 PF16740.5 gi|352682972|ref|YP_004893496.1| - 0.017 14.9 5.8 0.83 9.5 0.8 2.3 1 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 SCP-1 PF05483.12 gi|352682972|ref|YP_004893496.1| - 0.017 13.1 8.3 0.021 12.9 8.3 1.1 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) UPF0242 PF06785.11 gi|352682972|ref|YP_004893496.1| - 0.018 15.2 7.3 0.32 11.1 7.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Med9 PF07544.13 gi|352682972|ref|YP_004893496.1| - 0.018 15.1 8.7 0.25 11.4 2.5 2.5 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Tmemb_cc2 PF10267.9 gi|352682972|ref|YP_004893496.1| - 0.018 14.2 1.4 0.018 14.2 1.4 2.0 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein CheZ PF04344.13 gi|352682972|ref|YP_004893496.1| - 0.018 14.9 4.0 0.025 14.5 4.0 1.2 1 0 0 1 1 1 0 Chemotaxis phosphatase, CheZ TFR_dimer PF04253.15 gi|352682972|ref|YP_004893496.1| - 0.019 15.1 3.2 0.68 10.0 0.9 2.3 1 1 1 2 2 2 0 Transferrin receptor-like dimerisation domain DUF4201 PF13870.6 gi|352682972|ref|YP_004893496.1| - 0.019 14.7 10.3 0.15 11.8 4.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Dor1 PF04124.12 gi|352682972|ref|YP_004893496.1| - 0.02 13.6 4.3 0.028 13.1 4.3 1.3 1 0 0 1 1 1 0 Dor1-like family JIP_LZII PF16471.5 gi|352682972|ref|YP_004893496.1| - 0.02 15.1 11.1 1.4 9.1 3.5 3.2 1 1 2 3 3 3 0 JNK-interacting protein leucine zipper II Rad50_zn_hook PF04423.14 gi|352682972|ref|YP_004893496.1| - 0.02 14.7 0.7 1.3e+02 2.6 0.0 4.9 3 2 2 6 6 5 0 Rad50 zinc hook motif DUF4140 PF13600.6 gi|352682972|ref|YP_004893496.1| - 0.02 15.3 12.9 0.96 9.9 0.7 3.2 1 1 2 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF3782 PF12644.7 gi|352682972|ref|YP_004893496.1| - 0.02 15.0 11.4 15 5.8 0.6 4.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3782) SlyX PF04102.12 gi|352682972|ref|YP_004893496.1| - 0.021 15.4 16.0 1.7 9.3 0.4 3.9 2 1 2 4 4 3 0 SlyX DUF2959 PF11172.8 gi|352682972|ref|YP_004893496.1| - 0.022 14.9 5.7 1.5 8.9 1.0 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) DUF2130 PF09903.9 gi|352682972|ref|YP_004893496.1| - 0.023 14.0 3.4 0.031 13.5 3.1 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) LidA_Long_CC PF18641.1 gi|352682972|ref|YP_004893496.1| - 0.025 14.7 6.7 5.5 7.0 0.1 2.8 1 1 1 2 2 2 0 LidA long coiled-coil domain DASH_Dam1 PF08653.10 gi|352682972|ref|YP_004893496.1| - 0.025 14.4 3.6 4.8 7.1 0.1 3.3 1 1 2 3 3 3 0 DASH complex subunit Dam1 HR1 PF02185.16 gi|352682972|ref|YP_004893496.1| - 0.025 14.7 10.1 2 8.6 0.2 3.3 1 1 1 3 3 3 0 Hr1 repeat ZapA PF05164.13 gi|352682972|ref|YP_004893496.1| - 0.025 15.0 11.3 16 6.0 11.3 3.3 1 1 0 1 1 1 0 Cell division protein ZapA Phasin PF05597.11 gi|352682972|ref|YP_004893496.1| - 0.026 14.5 9.7 0.72 9.9 2.3 3.0 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4041 PF13250.6 gi|352682972|ref|YP_004893496.1| - 0.026 14.4 3.4 4.6 7.2 0.1 3.6 1 1 2 4 4 3 0 Domain of unknown function (DUF4041) Syntaxin PF00804.25 gi|352682972|ref|YP_004893496.1| - 0.027 14.1 8.7 0.23 11.1 5.0 2.2 1 1 1 2 2 2 0 Syntaxin KASH_CCD PF14662.6 gi|352682972|ref|YP_004893496.1| - 0.029 14.2 9.1 0.064 13.1 8.3 1.9 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH Prefoldin_3 PF13758.6 gi|352682972|ref|YP_004893496.1| - 0.029 14.4 11.9 0.26 11.4 4.8 3.0 1 1 1 2 2 2 0 Prefoldin subunit LUC7 PF03194.15 gi|352682972|ref|YP_004893496.1| - 0.031 14.0 7.7 0.11 12.1 7.7 1.8 1 1 0 1 1 1 0 LUC7 N_terminus Sec3_C PF09763.9 gi|352682972|ref|YP_004893496.1| - 0.031 12.7 5.2 0.074 11.4 1.2 2.0 1 1 1 2 2 2 0 Exocyst complex component Sec3 DUF1515 PF07439.11 gi|352682972|ref|YP_004893496.1| - 0.032 14.2 12.7 0.75 9.8 5.9 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) DASH_Dad2 PF08654.10 gi|352682972|ref|YP_004893496.1| - 0.033 14.6 0.8 1.9 8.9 0.1 2.8 1 1 2 3 3 3 0 DASH complex subunit Dad2 DUF2313 PF10076.9 gi|352682972|ref|YP_004893496.1| - 0.033 14.0 0.4 8.7 6.2 0.0 2.6 1 1 1 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2313) LXG PF04740.12 gi|352682972|ref|YP_004893496.1| - 0.034 13.9 7.1 0.014 15.2 4.3 1.7 2 1 0 2 2 1 0 LXG domain of WXG superfamily HalX PF08663.10 gi|352682972|ref|YP_004893496.1| - 0.035 14.4 19.2 20 5.6 1.2 4.5 2 1 1 3 3 2 0 HalX domain DUF4795 PF16043.5 gi|352682972|ref|YP_004893496.1| - 0.037 13.6 11.5 0.075 12.6 11.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) BAR_3 PF16746.5 gi|352682972|ref|YP_004893496.1| - 0.038 13.7 2.2 0.091 12.5 2.2 1.8 1 1 0 1 1 1 0 BAR domain of APPL family ACCA PF03255.14 gi|352682972|ref|YP_004893496.1| - 0.038 13.9 4.8 0.5 10.2 1.2 2.3 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TBK1_CCD1 PF18394.1 gi|352682972|ref|YP_004893496.1| - 0.041 13.4 4.7 0.1 12.2 3.1 2.6 1 1 1 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 Acyl-CoA_dh_2 PF08028.11 gi|352682972|ref|YP_004893496.1| - 0.042 14.1 2.2 0.23 11.7 0.3 2.4 1 1 2 3 3 3 0 Acyl-CoA dehydrogenase, C-terminal domain PRKG1_interact PF15898.5 gi|352682972|ref|YP_004893496.1| - 0.042 14.7 10.0 0.11 13.4 4.2 2.5 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain MIP-T3_C PF17749.1 gi|352682972|ref|YP_004893496.1| - 0.044 13.7 10.6 0.12 12.3 3.8 2.4 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region DUF4618 PF15397.6 gi|352682972|ref|YP_004893496.1| - 0.045 13.2 5.4 0.1 12.0 4.3 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) DUF4455 PF14643.6 gi|352682972|ref|YP_004893496.1| - 0.046 12.4 8.2 0.064 11.9 8.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) Cep57_MT_bd PF06657.13 gi|352682972|ref|YP_004893496.1| - 0.047 14.2 7.8 0.58 10.7 0.8 3.0 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 COG5 PF10392.9 gi|352682972|ref|YP_004893496.1| - 0.048 13.8 4.0 0.28 11.4 2.1 2.1 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Enkurin PF13864.6 gi|352682972|ref|YP_004893496.1| - 0.049 14.1 1.9 1.4 9.4 1.7 2.6 1 1 0 1 1 1 0 Calmodulin-binding Cauli_DNA-bind PF03310.13 gi|352682972|ref|YP_004893496.1| - 0.051 13.6 4.6 0.13 12.3 1.7 2.2 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein MobC PF05713.11 gi|352682972|ref|YP_004893496.1| - 0.051 14.0 5.1 17 5.9 0.3 4.5 1 1 4 6 6 4 0 Bacterial mobilisation protein (MobC) EspB PF05802.11 gi|352682972|ref|YP_004893496.1| - 0.052 13.5 8.9 0.025 14.6 3.9 2.5 1 1 1 2 2 2 0 Enterobacterial EspB protein DUF885 PF05960.11 gi|352682972|ref|YP_004893496.1| - 0.052 13.2 2.0 0.062 12.9 2.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) LPP PF04728.13 gi|352682972|ref|YP_004893496.1| - 0.052 13.9 11.4 1.7 9.1 2.6 3.6 1 1 2 3 3 3 0 Lipoprotein leucine-zipper DUF677 PF05055.12 gi|352682972|ref|YP_004893496.1| - 0.052 12.4 6.4 0.12 11.2 2.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF677) Rab5-bind PF09311.11 gi|352682972|ref|YP_004893496.1| - 0.053 12.9 8.1 0.26 10.7 7.2 2.0 1 1 0 1 1 1 0 Rabaptin-like protein SHE3 PF17078.5 gi|352682972|ref|YP_004893496.1| - 0.053 13.2 5.8 0.12 12.1 5.8 1.7 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF2730 PF10805.8 gi|352682972|ref|YP_004893496.1| - 0.059 13.5 6.8 0.23 11.6 1.2 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) DUF1043 PF06295.12 gi|352682972|ref|YP_004893496.1| - 0.059 13.4 0.2 0.31 11.1 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) Bacillus_HBL PF05791.11 gi|352682972|ref|YP_004893496.1| - 0.06 13.2 4.5 0.31 10.8 4.3 1.9 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) ATG16 PF08614.11 gi|352682972|ref|YP_004893496.1| - 0.061 13.5 13.9 3.8 7.7 2.0 2.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) ECH_2 PF16113.5 gi|352682972|ref|YP_004893496.1| - 0.065 12.7 0.9 0.083 12.4 0.9 1.2 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase YojJ PF10372.9 gi|352682972|ref|YP_004893496.1| - 0.071 13.2 6.5 3.4 7.8 0.2 3.3 1 1 2 3 3 3 0 Bacterial membrane-spanning protein N-terminus PMC2NT PF08066.12 gi|352682972|ref|YP_004893496.1| - 0.071 13.8 6.2 0.43 11.3 4.0 2.3 2 0 0 2 2 2 0 PMC2NT (NUC016) domain Fez1 PF06818.15 gi|352682972|ref|YP_004893496.1| - 0.071 13.5 8.9 0.39 11.1 8.1 2.1 1 1 0 1 1 1 0 Fez1 AAA_11 PF13086.6 gi|352682972|ref|YP_004893496.1| - 0.073 12.9 5.3 0.1 12.3 5.3 1.2 1 0 0 1 1 1 0 AAA domain YvrJ PF12841.7 gi|352682972|ref|YP_004893496.1| - 0.073 12.6 1.8 8.9 5.9 0.1 3.9 3 1 2 5 5 3 0 YvrJ protein family YscO PF07321.12 gi|352682972|ref|YP_004893496.1| - 0.073 13.0 11.4 0.14 12.1 1.8 2.4 1 1 1 2 2 2 0 Type III secretion protein YscO DUF1192 PF06698.11 gi|352682972|ref|YP_004893496.1| - 0.074 13.1 13.3 1 9.5 0.7 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1192) MitMem_reg PF13012.6 gi|352682972|ref|YP_004893496.1| - 0.075 13.5 1.0 1 9.8 1.0 2.2 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function DUF3540 PF12059.8 gi|352682972|ref|YP_004893496.1| - 0.075 12.9 2.1 1.5 8.6 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3540) MtrG PF04210.13 gi|352682972|ref|YP_004893496.1| - 0.08 12.8 8.1 7.5 6.5 0.5 3.6 1 1 2 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G WDCP PF15390.6 gi|352682972|ref|YP_004893496.1| - 0.091 11.1 2.0 0.11 10.9 2.0 1.1 1 0 0 1 1 1 0 WD repeat and coiled-coil-containing protein family DUF2937 PF11157.8 gi|352682972|ref|YP_004893496.1| - 0.091 12.5 1.9 0.31 10.7 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) Syntaxin-6_N PF09177.11 gi|352682972|ref|YP_004893496.1| - 0.092 13.3 7.8 8 7.1 7.8 2.5 1 1 0 1 1 1 0 Syntaxin 6, N-terminal BshC PF10079.9 gi|352682972|ref|YP_004893496.1| - 0.092 11.5 4.1 0.14 10.9 4.1 1.4 1 1 0 1 1 1 0 Bacillithiol biosynthesis BshC TMCO5 PF14992.6 gi|352682972|ref|YP_004893496.1| - 0.095 12.3 5.0 0.3 10.6 4.8 1.7 1 1 0 1 1 1 0 TMCO5 family P4Ha_N PF08336.11 gi|352682972|ref|YP_004893496.1| - 0.097 12.7 5.3 3.4 7.7 0.1 3.1 1 1 2 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region AIP3 PF03915.13 gi|352682972|ref|YP_004893496.1| - 0.098 11.7 9.7 0.14 11.3 9.7 1.2 1 0 0 1 1 1 0 Actin interacting protein 3 DASH_Spc19 PF08287.11 gi|352682972|ref|YP_004893496.1| - 0.098 12.5 9.0 1.4 8.8 0.7 2.6 1 1 2 3 3 3 0 Spc19 Cortex-I_coil PF09304.10 gi|352682972|ref|YP_004893496.1| - 0.1 12.8 15.9 1.3 9.3 0.6 3.1 1 1 2 3 3 3 0 Cortexillin I, coiled coil Dynactin_p22 PF07426.11 gi|352682972|ref|YP_004893496.1| - 0.11 12.4 4.1 1.3 8.9 4.1 2.3 1 1 0 1 1 1 0 Dynactin subunit p22 HAUS-augmin3 PF14932.6 gi|352682972|ref|YP_004893496.1| - 0.11 12.1 2.6 0.43 10.1 2.6 1.9 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 TraF_2 PF13729.6 gi|352682972|ref|YP_004893496.1| - 0.11 11.9 11.1 0.24 10.7 5.3 2.5 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Corona_S2 PF01601.16 gi|352682972|ref|YP_004893496.1| - 0.11 11.0 3.7 0.2 10.1 2.2 1.8 1 1 2 3 3 3 0 Coronavirus S2 glycoprotein STAT_alpha PF01017.20 gi|352682972|ref|YP_004893496.1| - 0.11 12.4 4.3 0.32 10.9 4.3 1.7 1 1 0 1 1 1 0 STAT protein, all-alpha domain gpW PF02831.15 gi|352682972|ref|YP_004893496.1| - 0.12 12.3 0.8 12 5.9 0.1 3.0 2 1 1 3 3 2 0 gpW V-SNARE_C PF12352.8 gi|352682972|ref|YP_004893496.1| - 0.12 12.7 6.6 10 6.5 0.1 3.7 2 1 2 4 4 4 0 Snare region anchored in the vesicle membrane C-terminus DUF745 PF05335.13 gi|352682972|ref|YP_004893496.1| - 0.12 12.0 2.8 0.18 11.5 2.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) DUF489 PF04356.12 gi|352682972|ref|YP_004893496.1| - 0.13 12.3 2.3 0.64 10.0 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF489) THOC7 PF05615.13 gi|352682972|ref|YP_004893496.1| - 0.13 12.6 11.8 0.073 13.3 7.2 2.1 2 1 1 3 3 2 0 Tho complex subunit 7 Vip3A_N PF12495.8 gi|352682972|ref|YP_004893496.1| - 0.14 12.0 1.8 0.37 10.7 1.7 1.7 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal DUF2408 PF10303.9 gi|352682972|ref|YP_004893496.1| - 0.14 12.7 5.9 0.19 12.3 5.1 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2408) DUF2333 PF10095.9 gi|352682972|ref|YP_004893496.1| - 0.15 11.1 1.2 1.1 8.2 1.1 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2333) Syntaxin_2 PF14523.6 gi|352682972|ref|YP_004893496.1| - 0.15 12.4 10.0 0.36 11.2 9.3 2.0 1 1 1 2 2 2 0 Syntaxin-like protein ADIP PF11559.8 gi|352682972|ref|YP_004893496.1| - 0.15 12.1 8.1 1.8 8.7 1.2 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding GrpE PF01025.19 gi|352682972|ref|YP_004893496.1| - 0.15 11.7 7.9 3.3 7.3 3.7 2.5 1 1 1 2 2 2 0 GrpE AKNA PF12443.8 gi|352682972|ref|YP_004893496.1| - 0.15 12.7 1.8 36 5.1 0.3 3.0 1 1 1 2 2 2 0 AT-hook-containing transcription factor DUF4164 PF13747.6 gi|352682972|ref|YP_004893496.1| - 0.16 12.3 21.7 2.5 8.4 11.3 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) CCDC-167 PF15188.6 gi|352682972|ref|YP_004893496.1| - 0.16 12.3 17.3 5.1 7.5 8.0 3.4 2 1 1 3 3 2 0 Coiled-coil domain-containing protein 167 DegS PF05384.11 gi|352682972|ref|YP_004893496.1| - 0.16 11.4 11.5 1.1 8.7 2.8 2.4 1 1 0 2 2 2 0 Sensor protein DegS Erp_C PF06780.11 gi|352682972|ref|YP_004893496.1| - 0.17 11.9 9.0 0.63 10.1 8.6 2.6 1 1 1 2 2 2 0 Erp protein C-terminus DUF724 PF05266.14 gi|352682972|ref|YP_004893496.1| - 0.17 11.7 6.8 0.9 9.3 1.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF724) FAM76 PF16046.5 gi|352682972|ref|YP_004893496.1| - 0.19 11.1 9.1 0.27 10.6 2.3 2.2 1 1 2 3 3 3 0 FAM76 protein Ribosomal_S30AE PF02482.19 gi|352682972|ref|YP_004893496.1| - 0.19 12.5 11.0 0.17 12.7 4.1 3.2 2 2 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Hemerythrin PF01814.23 gi|352682972|ref|YP_004893496.1| - 0.2 12.3 8.0 0.87 10.2 1.4 2.3 1 1 0 2 2 2 0 Hemerythrin HHE cation binding domain PspB PF06667.12 gi|352682972|ref|YP_004893496.1| - 0.2 11.7 13.3 8.9 6.5 1.7 3.5 1 1 2 3 3 3 0 Phage shock protein B Filo_VP35 PF02097.15 gi|352682972|ref|YP_004893496.1| - 0.24 10.4 2.1 5.4 6.0 0.1 2.1 1 1 1 2 2 2 0 Filoviridae VP35 TolA_bind_tri PF16331.5 gi|352682972|ref|YP_004893496.1| - 0.26 11.4 11.1 8.4 6.6 7.2 3.1 1 1 2 3 3 3 0 TolA binding protein trimerisation YtxH PF12732.7 gi|352682972|ref|YP_004893496.1| - 0.26 11.9 7.1 37 5.0 7.1 3.1 1 1 0 1 1 1 0 YtxH-like protein UPF0184 PF03670.13 gi|352682972|ref|YP_004893496.1| - 0.26 11.7 13.2 3.7 8.0 1.0 3.3 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0184) Sipho_Gp157 PF05565.11 gi|352682972|ref|YP_004893496.1| - 0.26 11.3 10.6 2 8.4 1.4 2.1 1 1 1 2 2 2 0 Siphovirus Gp157 TssO PF17561.2 gi|352682972|ref|YP_004893496.1| - 0.26 11.4 4.3 6.7 6.8 0.8 2.6 1 1 1 2 2 2 0 Type VI secretion system, TssO DUF1993 PF09351.10 gi|352682972|ref|YP_004893496.1| - 0.27 11.4 2.1 4 7.6 0.4 2.5 1 1 2 3 3 3 0 Domain of unknown function (DUF1993) Vps54_N PF10475.9 gi|352682972|ref|YP_004893496.1| - 0.28 10.4 3.3 1.2 8.3 3.3 1.8 1 1 0 1 1 1 0 Vacuolar-sorting protein 54, of GARP complex Ufd2P_core PF10408.9 gi|352682972|ref|YP_004893496.1| - 0.28 9.7 1.2 1.9 7.0 1.3 1.9 1 1 0 1 1 1 0 Ubiquitin elongating factor core BBP1_C PF15272.6 gi|352682972|ref|YP_004893496.1| - 0.29 10.9 8.7 1 9.2 8.6 1.8 1 1 0 1 1 1 0 Spindle pole body component BBP1, C-terminal Fungal_trans_2 PF11951.8 gi|352682972|ref|YP_004893496.1| - 0.32 9.8 2.3 0.62 8.8 2.3 1.5 1 1 0 1 1 1 0 Fungal specific transcription factor domain DUF4635 PF15466.6 gi|352682972|ref|YP_004893496.1| - 0.32 10.5 3.5 1.6 8.2 0.4 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4635) FlgN PF05130.12 gi|352682972|ref|YP_004893496.1| - 0.33 11.4 7.0 0.34 11.4 1.4 2.2 1 1 1 2 2 2 0 FlgN protein FmiP_Thoc5 PF09766.9 gi|352682972|ref|YP_004893496.1| - 0.34 10.2 3.5 0.66 9.2 0.8 2.1 1 1 1 2 2 2 0 Fms-interacting protein/Thoc5 DUF4527 PF15030.6 gi|352682972|ref|YP_004893496.1| - 0.36 10.2 4.7 2.9 7.2 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4527) KH_5 PF13184.6 gi|352682972|ref|YP_004893496.1| - 0.36 10.9 4.0 11 6.2 3.9 2.7 1 1 0 1 1 1 0 NusA-like KH domain KIP1 PF07765.12 gi|352682972|ref|YP_004893496.1| - 0.37 10.9 8.1 1.1 9.5 3.2 2.3 1 1 1 2 2 2 0 KIP1-like protein DLP_helical PF18709.1 gi|352682972|ref|YP_004893496.1| - 0.37 9.9 8.5 1.6 7.8 1.5 2.4 1 1 2 3 3 3 0 Dynamin-like helical domain Sec2p PF06428.11 gi|352682972|ref|YP_004893496.1| - 0.38 10.7 9.1 3 7.9 3.1 2.9 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p Ran-binding PF05508.11 gi|352682972|ref|YP_004893496.1| - 0.38 9.7 7.7 1.2 8.1 7.7 1.7 1 1 0 1 1 1 0 RanGTP-binding protein DUF5320 PF17253.2 gi|352682972|ref|YP_004893496.1| - 0.4 11.8 2.2 29 5.8 0.2 3.0 1 1 2 3 3 3 0 Family of unknown function (DUF5320) CSN5_C PF18323.1 gi|352682972|ref|YP_004893496.1| - 0.4 11.6 6.5 0.31 12.0 0.9 2.6 2 1 1 3 3 2 0 Cop9 signalosome subunit 5 C-terminal domain Spc29 PF17082.5 gi|352682972|ref|YP_004893496.1| - 0.43 10.4 11.1 3.5 7.4 11.1 2.1 1 1 0 1 1 1 0 Spindle Pole Component 29 HAUS6_N PF14661.6 gi|352682972|ref|YP_004893496.1| - 0.48 10.0 7.1 1.9 8.0 6.4 2.3 1 1 1 2 2 1 0 HAUS augmin-like complex subunit 6 N-terminus MutS_IV PF05190.18 gi|352682972|ref|YP_004893496.1| - 0.49 10.8 8.8 14 6.1 0.4 3.6 1 1 2 3 3 3 0 MutS family domain IV WASH_WAHD PF11945.8 gi|352682972|ref|YP_004893496.1| - 0.53 9.8 12.4 0.4 10.2 4.4 2.4 1 1 2 3 3 3 0 WAHD domain of WASH complex Peptidase_M75 PF09375.10 gi|352682972|ref|YP_004893496.1| - 0.59 9.5 3.6 1.6 8.2 3.6 1.8 1 1 0 1 1 1 0 Imelysin DUF1759 PF03564.15 gi|352682972|ref|YP_004893496.1| - 0.62 10.0 3.5 1.7 8.6 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) DUF1690 PF07956.11 gi|352682972|ref|YP_004893496.1| - 0.63 10.5 8.9 0.91 9.9 2.5 2.4 1 1 1 2 2 2 0 Protein of Unknown function (DUF1690) MctB PF11382.8 gi|352682972|ref|YP_004893496.1| - 0.64 9.7 7.6 3.8 7.1 0.3 3.0 1 1 2 3 3 3 0 Copper transport outer membrane protein, MctB Phage_tail_NK PF16532.5 gi|352682972|ref|YP_004893496.1| - 0.68 9.5 2.9 8.3 6.0 0.2 2.3 1 1 1 2 2 2 0 Sf6-type phage tail needle knob or tip of some Caudovirales NPA PF16469.5 gi|352682972|ref|YP_004893496.1| - 0.7 10.5 8.4 14 6.2 1.4 3.6 2 1 1 3 3 2 0 Nematode polyprotein allergen ABA-1 HIP1_clath_bdg PF16515.5 gi|352682972|ref|YP_004893496.1| - 0.7 10.5 7.1 2.9 8.6 0.9 2.4 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 KfrA_N PF11740.8 gi|352682972|ref|YP_004893496.1| - 0.71 10.6 8.8 1e+02 3.6 8.8 3.5 1 1 0 1 1 1 0 Plasmid replication region DNA-binding N-term MafB PF06255.13 gi|352682972|ref|YP_004893496.1| - 0.75 9.2 3.3 2.3 7.6 0.8 2.0 1 1 1 2 2 2 0 Neisseria toxin MafB Cnn_1N PF07989.11 gi|352682972|ref|YP_004893496.1| - 0.76 10.0 11.1 5 7.4 3.8 2.7 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 MerR-DNA-bind PF09278.11 gi|352682972|ref|YP_004893496.1| - 0.79 10.3 19.2 5.2 7.7 3.8 4.1 1 1 3 4 4 4 0 MerR, DNA binding Cluap1 PF10234.9 gi|352682972|ref|YP_004893496.1| - 0.82 9.0 10.2 0.74 9.2 5.1 2.1 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF4404 PF14357.6 gi|352682972|ref|YP_004893496.1| - 0.92 10.2 7.8 3.2 8.5 1.9 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4404) Goodbye PF17109.5 gi|352682972|ref|YP_004893496.1| - 0.97 9.9 5.0 4 7.9 0.5 2.8 1 1 2 3 3 2 0 fungal STAND N-terminal Goodbye domain Val_tRNA-synt_C PF10458.9 gi|352682972|ref|YP_004893496.1| - 0.97 9.8 10.2 1.7 9.0 0.3 4.0 2 1 0 3 3 2 0 Valyl tRNA synthetase tRNA binding arm Fungal_TACC PF12709.7 gi|352682972|ref|YP_004893496.1| - 1 9.8 5.1 37 4.9 0.1 3.9 1 1 3 4 4 4 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF4349 PF14257.6 gi|352682972|ref|YP_004893496.1| - 1.1 8.7 17.7 2.3 7.6 9.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) DUF2120 PF09893.9 gi|352682972|ref|YP_004893496.1| - 1.1 9.4 10.2 0.18 11.9 3.3 2.2 2 1 1 3 3 2 0 Uncharacterized protein conserved in archaea (DUF2120) DUF5446 PF17522.2 gi|352682972|ref|YP_004893496.1| - 1.1 9.4 11.8 2.4 8.4 2.1 2.8 2 1 1 3 3 2 0 Family of unknown function (DUF5446) Vps53_N PF04100.12 gi|352682972|ref|YP_004893496.1| - 1.1 8.1 8.2 0.44 9.4 4.2 1.8 1 1 1 2 2 2 0 Vps53-like, N-terminal DUF4337 PF14235.6 gi|352682972|ref|YP_004893496.1| - 1.3 9.1 4.5 13 5.8 4.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) Ku_C PF03730.14 gi|352682972|ref|YP_004893496.1| - 1.3 9.7 3.7 28 5.5 0.8 2.7 1 1 1 2 2 2 0 Ku70/Ku80 C-terminal arm Tho2 PF11262.8 gi|352682972|ref|YP_004893496.1| - 1.3 8.1 4.4 2.2 7.4 4.0 1.6 1 1 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 SOAR PF16533.5 gi|352682972|ref|YP_004893496.1| - 1.5 8.9 9.2 3.6 7.6 0.2 3.0 2 1 1 3 3 2 0 STIM1 Orai1-activating region ZapB PF06005.12 gi|352682972|ref|YP_004893496.1| - 1.7 9.1 9.6 1.2e+02 3.2 7.6 3.0 2 1 0 2 2 1 0 Cell division protein ZapB DUF3772 PF12607.8 gi|352682972|ref|YP_004893496.1| - 2.1 8.2 7.9 3.2 7.6 0.3 3.6 2 2 4 6 6 3 0 Protein of unknown function (DUF3772) DUF883 PF05957.13 gi|352682972|ref|YP_004893496.1| - 2.4 8.8 11.2 33 5.2 9.4 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) MIF4G_like_2 PF09090.11 gi|352682972|ref|YP_004893496.1| - 2.7 7.4 8.1 12 5.2 8.1 2.1 1 1 0 1 1 1 0 MIF4G like BRI3BP PF14965.6 gi|352682972|ref|YP_004893496.1| - 3.3 7.2 5.5 11 5.4 0.1 3.1 1 1 2 3 3 3 0 Negative regulator of p53/TP53 ARGLU PF15346.6 gi|352682972|ref|YP_004893496.1| - 3.7 7.4 18.1 0.2 11.5 12.3 1.9 2 1 0 2 2 1 0 Arginine and glutamate-rich 1 Snf7 PF03357.21 gi|352682972|ref|YP_004893496.1| - 3.9 7.0 16.3 1.2 8.8 6.7 2.8 2 1 1 3 3 2 0 Snf7 HK97-gp10_like PF04883.12 gi|352682972|ref|YP_004893496.1| - 4.6 8.3 10.2 12 7.0 0.1 3.6 1 1 1 3 3 3 0 Bacteriophage HK97-gp10, putative tail-component Med4 PF10018.9 gi|352682972|ref|YP_004893496.1| - 7.9 6.1 11.1 1.5 8.4 3.3 2.1 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Synaptobrevin PF00957.21 gi|352682972|ref|YP_004893496.1| - 8.9 6.2 10.4 46 3.9 3.0 3.2 1 1 2 3 3 3 0 Synaptobrevin zf-C4H2 PF10146.9 gi|352682972|ref|YP_004893496.1| - 9.8 6.4 8.1 17 5.6 8.1 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein HSP20 PF00011.21 gi|352682973|ref|YP_004893497.1| - 1.8e-11 44.1 0.1 5.7e-10 39.2 0.1 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|352682973|ref|YP_004893497.1| - 3e-08 33.1 0.0 5.5e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA PIH1_CS PF18201.1 gi|352682973|ref|YP_004893497.1| - 0.032 14.6 0.0 0.044 14.2 0.0 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain DUF2122 PF09895.9 gi|352682974|ref|YP_004893498.1| - 1.6e-24 86.3 0.0 2.1e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) PNP_UDP_1 PF01048.20 gi|352682976|ref|YP_004893500.1| - 7.3e-43 146.5 0.3 8.1e-43 146.3 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily LAB_N PF07578.11 gi|352682977|ref|YP_004893501.1| - 0.003 17.6 0.0 0.0037 17.3 0.0 1.3 1 0 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain MtN3_slv PF03083.16 gi|352682977|ref|YP_004893501.1| - 0.0086 16.1 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Sugar efflux transporter for intercellular exchange PsbY PF06298.11 gi|352682977|ref|YP_004893501.1| - 0.11 12.4 2.3 0.13 12.2 1.1 1.8 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) GHMP_kinases_N PF00288.26 gi|352682978|ref|YP_004893502.1| - 5.4e-12 45.8 1.6 1.2e-11 44.6 1.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|352682978|ref|YP_004893502.1| - 4.5e-07 30.1 0.1 1.1e-06 28.9 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|352682978|ref|YP_004893502.1| - 0.013 15.0 0.1 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 Galactokinase galactose-binding signature RL10P_insert PF17777.1 gi|352682979|ref|YP_004893503.1| - 1.8e-20 72.7 0.0 3.5e-20 71.8 0.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|352682979|ref|YP_004893503.1| - 5.8e-19 68.1 0.0 1.1e-18 67.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RNA_pol_Rpb1_5 PF04998.17 gi|352682979|ref|YP_004893503.1| - 0.16 11.3 0.0 0.29 10.5 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 5 7TMR-HDED PF07697.11 gi|352682979|ref|YP_004893503.1| - 0.43 10.7 6.2 0.48 10.5 0.2 3.0 3 1 0 3 3 3 0 7TM-HD extracellular Ribosomal_60s PF00428.19 gi|352682979|ref|YP_004893503.1| - 2 9.1 17.8 0.72 10.5 13.8 2.2 2 1 0 2 2 2 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|352682980|ref|YP_004893504.1| - 6.3e-36 124.0 0.0 7.7e-36 123.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family DDE_Tnp_1_2 PF13586.6 gi|352682980|ref|YP_004893504.1| - 0.072 13.5 0.0 0.21 12.0 0.0 1.7 1 0 0 1 1 1 0 Transposase DDE domain Ribosomal_L11 PF00298.19 gi|352682981|ref|YP_004893505.1| - 3.2e-17 62.8 0.1 6.3e-17 61.9 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain EAL PF00563.20 gi|352682981|ref|YP_004893505.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 EAL domain DUF2674 PF10879.8 gi|352682981|ref|YP_004893505.1| - 0.12 12.0 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2674) Spt5-NGN PF03439.13 gi|352682982|ref|YP_004893506.1| - 2.5e-13 49.7 0.3 3.6e-13 49.2 0.3 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|352682982|ref|YP_004893506.1| - 0.0089 16.0 1.2 0.0089 16.0 1.2 2.0 2 0 0 2 2 2 1 KOW motif SRP54 PF00448.22 gi|352682984|ref|YP_004893508.1| - 1.1e-65 221.0 0.0 1.4e-65 220.6 0.0 1.1 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|352682984|ref|YP_004893508.1| - 1.8e-07 31.3 0.4 3.8e-07 30.2 0.4 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain AAA_22 PF13401.6 gi|352682984|ref|YP_004893508.1| - 0.00017 21.9 0.0 0.00042 20.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|352682984|ref|YP_004893508.1| - 0.00024 20.9 0.2 0.00024 20.9 0.2 1.7 2 1 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|352682984|ref|YP_004893508.1| - 0.0013 18.8 0.0 0.0068 16.5 0.0 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|352682984|ref|YP_004893508.1| - 0.0073 16.7 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|352682984|ref|YP_004893508.1| - 0.01 16.0 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|352682984|ref|YP_004893508.1| - 0.011 16.1 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|352682984|ref|YP_004893508.1| - 0.04 14.0 0.0 0.17 11.9 0.0 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase Peripla_BP_4 PF13407.6 gi|352682984|ref|YP_004893508.1| - 0.059 12.9 0.1 1.5 8.3 0.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein domain Pribosyltran_N PF13793.6 gi|352682984|ref|YP_004893508.1| - 0.062 13.3 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 N-terminal domain of ribose phosphate pyrophosphokinase AAA_28 PF13521.6 gi|352682984|ref|YP_004893508.1| - 0.088 13.1 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|352682984|ref|YP_004893508.1| - 0.099 11.9 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|352682984|ref|YP_004893508.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|352682984|ref|YP_004893508.1| - 0.1 12.5 0.0 3.3 7.6 0.0 2.4 1 1 0 1 1 1 0 NTPase ABC_tran PF00005.27 gi|352682984|ref|YP_004893508.1| - 0.12 12.9 0.0 0.25 11.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_16 PF13191.6 gi|352682984|ref|YP_004893508.1| - 0.13 12.7 0.0 0.26 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_23 PF13476.6 gi|352682984|ref|YP_004893508.1| - 0.25 11.8 0.0 0.45 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Prefoldin PF02996.17 gi|352682985|ref|YP_004893509.1| - 2.2e-20 72.8 0.5 3.3e-20 72.2 0.3 1.3 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|352682985|ref|YP_004893509.1| - 4.6e-06 26.5 2.6 0.00055 19.9 0.1 2.1 1 1 0 2 2 2 2 Prefoldin subunit PspA_IM30 PF04012.12 gi|352682985|ref|YP_004893509.1| - 0.00034 20.3 1.6 0.12 12.0 0.2 2.1 2 0 0 2 2 2 2 PspA/IM30 family Tektin PF03148.14 gi|352682985|ref|YP_004893509.1| - 0.0015 17.3 5.0 0.27 9.9 0.7 2.0 2 0 0 2 2 2 2 Tektin family Spc7 PF08317.11 gi|352682985|ref|YP_004893509.1| - 0.0028 16.6 0.1 0.94 8.3 0.0 2.0 2 0 0 2 2 2 2 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|352682985|ref|YP_004893509.1| - 0.0035 17.6 1.4 0.99 9.8 0.1 2.1 2 0 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF465 PF04325.13 gi|352682985|ref|YP_004893509.1| - 0.0047 16.9 0.1 0.0095 16.0 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF465) Seryl_tRNA_N PF02403.22 gi|352682985|ref|YP_004893509.1| - 0.022 15.0 3.0 0.36 11.1 0.2 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Bacillus_HBL PF05791.11 gi|352682985|ref|YP_004893509.1| - 0.063 13.1 1.1 2.3 8.0 0.1 2.0 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) IFT57 PF10498.9 gi|352682985|ref|YP_004893509.1| - 0.093 11.7 0.1 1.2 8.0 0.0 1.9 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 GPHR_N PF12537.8 gi|352682985|ref|YP_004893509.1| - 0.18 11.9 1.4 12 6.1 0.0 3.0 2 1 1 3 3 3 0 The Golgi pH Regulator (GPHR) Family N-terminal Vps51 PF08700.11 gi|352682985|ref|YP_004893509.1| - 1.1 9.3 4.5 14 5.8 0.5 2.9 2 2 1 3 3 3 0 Vps51/Vps67 DASH_Dam1 PF08653.10 gi|352682985|ref|YP_004893509.1| - 1.8 8.4 3.9 35 4.3 0.2 3.1 2 2 1 3 3 3 0 DASH complex subunit Dam1 SlyX PF04102.12 gi|352682985|ref|YP_004893509.1| - 2.7 8.7 5.4 8.1 7.1 0.5 2.2 2 0 0 2 2 2 0 SlyX Ribosomal_L18A PF01775.17 gi|352682986|ref|YP_004893510.1| - 1.8e-08 34.5 0.1 2.3e-08 34.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|352682987|ref|YP_004893511.1| - 8.8e-67 224.3 4.2 1e-66 224.1 4.2 1.0 1 0 0 1 1 1 1 eIF-6 family Oxidored_q4 PF00507.19 gi|352682988|ref|YP_004893512.1| - 7.5e-06 26.0 0.3 1.9e-05 24.7 0.0 1.8 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ABC2_membrane_3 PF12698.7 gi|352682988|ref|YP_004893512.1| - 0.014 14.5 2.0 0.015 14.4 2.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein FixQ PF05545.11 gi|352682988|ref|YP_004893512.1| - 0.058 13.4 0.1 0.058 13.4 0.1 2.3 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ FtsX PF02687.21 gi|352682988|ref|YP_004893512.1| - 0.066 13.7 6.9 0.32 11.5 0.1 2.1 2 0 0 2 2 2 0 FtsX-like permease family SLC3A2_N PF16028.5 gi|352682988|ref|YP_004893512.1| - 0.073 12.6 1.0 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 Solute carrier family 3 member 2 N-terminus Piezo_RRas_bdg PF12166.8 gi|352682988|ref|YP_004893512.1| - 0.11 11.8 0.0 0.11 11.8 0.0 1.4 2 0 0 2 2 2 0 Piezo non-specific cation channel, R-Ras-binding domain DUF4131 PF13567.6 gi|352682988|ref|YP_004893512.1| - 0.14 11.8 1.5 0.18 11.4 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) MttA_Hcf106 PF02416.16 gi|352682988|ref|YP_004893512.1| - 0.19 11.1 1.4 0.31 10.4 1.4 1.4 1 0 0 1 1 1 0 mttA/Hcf106 family DUF5326 PF17260.2 gi|352682988|ref|YP_004893512.1| - 3.9 7.7 7.8 1.1 9.4 2.3 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5326) EamA PF00892.20 gi|352682989|ref|YP_004893513.1| - 4e-18 65.9 33.2 3.5e-15 56.4 11.0 2.5 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|352682989|ref|YP_004893513.1| - 0.13 11.6 5.9 3.2 7.0 1.3 2.3 2 0 0 2 2 2 0 Triose-phosphate Transporter family CTP_synth_N PF06418.14 gi|352682990|ref|YP_004893514.1| - 3.5e-116 387.1 0.0 4.4e-116 386.8 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|352682990|ref|YP_004893514.1| - 1.7e-52 177.9 0.0 3.3e-52 177.0 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|352682990|ref|YP_004893514.1| - 1.5e-08 34.7 0.0 3.5e-08 33.5 0.0 1.6 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|352682990|ref|YP_004893514.1| - 0.00039 20.5 0.0 0.00048 20.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Ribosomal_S14 PF00253.21 gi|352682991|ref|YP_004893515.1| - 9.2e-12 44.5 6.5 1.1e-11 44.2 6.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF1451 PF07295.11 gi|352682991|ref|YP_004893515.1| - 0.013 15.5 0.2 0.014 15.4 0.2 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-HYPF PF07503.12 gi|352682991|ref|YP_004893515.1| - 0.099 12.4 6.9 1.9 8.3 0.3 2.1 2 0 0 2 2 2 0 HypF finger Ribosomal_S8 PF00410.19 gi|352682992|ref|YP_004893516.1| - 1.6e-23 83.0 0.0 3.6e-23 81.9 0.0 1.5 1 1 0 1 1 1 1 Ribosomal protein S8 DUF429 PF04250.13 gi|352682993|ref|YP_004893517.1| - 8.5e-14 51.8 5.0 3.3e-10 40.1 0.4 3.0 1 1 1 2 2 2 2 Protein of unknown function (DUF429) Resolvase PF00239.21 gi|352682994|ref|YP_004893518.1| - 2e-35 122.1 0.1 2.7e-35 121.6 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Sigma70_r4 PF04545.16 gi|352682994|ref|YP_004893518.1| - 0.0028 17.2 3.4 0.0058 16.1 0.2 2.5 2 0 0 2 2 2 1 Sigma-70, region 4 Complex1_LYR PF05347.15 gi|352682994|ref|YP_004893518.1| - 0.011 15.8 0.4 0.047 13.7 0.0 2.3 3 0 0 3 3 3 0 Complex 1 protein (LYR family) HTH_23 PF13384.6 gi|352682994|ref|YP_004893518.1| - 0.016 15.0 0.0 0.056 13.3 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain DZR PF12773.7 gi|352682994|ref|YP_004893518.1| - 0.039 14.0 0.2 0.07 13.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|352682994|ref|YP_004893518.1| - 0.057 13.5 0.1 6.3 7.0 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Cys_rich_KTR PF14205.6 gi|352682994|ref|YP_004893518.1| - 0.077 12.8 0.8 0.23 11.3 0.8 1.8 1 1 0 1 1 1 0 Cysteine-rich KTR GCP_N_terminal PF17681.1 gi|352682994|ref|YP_004893518.1| - 0.099 12.2 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal FaeA PF04703.12 gi|352682994|ref|YP_004893518.1| - 0.12 12.8 0.1 0.32 11.4 0.1 1.8 1 1 0 1 1 1 0 FaeA-like protein zinc_ribbon_2 PF13240.6 gi|352682994|ref|YP_004893518.1| - 0.34 10.7 5.4 0.85 9.4 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|352682994|ref|YP_004893518.1| - 0.62 10.1 3.6 14 5.7 0.3 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|352682994|ref|YP_004893518.1| - 0.84 9.6 2.9 9.1 6.3 2.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|352682994|ref|YP_004893518.1| - 1.4 8.5 5.0 4.9 6.7 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Pribosyltran PF00156.27 gi|352682995|ref|YP_004893519.1| - 1.7e-21 76.4 0.0 2.4e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|352682995|ref|YP_004893519.1| - 0.0092 15.4 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Ribosomal_L32e PF01655.18 gi|352682996|ref|YP_004893520.1| - 5.6e-35 120.0 0.0 8.4e-35 119.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|352682997|ref|YP_004893521.1| - 1.1e-44 152.0 8.3 1.2e-44 151.8 8.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF4019 PF13211.6 gi|352682997|ref|YP_004893521.1| - 0.062 13.7 0.1 0.14 12.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) Ribosomal_L5e PF17144.4 gi|352682998|ref|YP_004893522.1| - 4.3e-29 101.6 2.0 8.7e-17 61.6 0.6 2.8 2 1 1 3 3 3 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|352682998|ref|YP_004893522.1| - 3.2e-14 53.6 1.3 4.9e-14 53.0 1.3 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|352682998|ref|YP_004893522.1| - 1.2e-08 35.3 0.1 2.1e-08 34.6 0.1 1.4 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Pyr_redox_2 PF07992.14 gi|352682999|ref|YP_004893523.1| - 5.8e-14 52.0 0.0 8.1e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352682999|ref|YP_004893523.1| - 8.6e-07 29.4 0.1 0.0091 16.5 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|352682999|ref|YP_004893523.1| - 0.016 14.1 0.1 0.026 13.4 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|352682999|ref|YP_004893523.1| - 0.035 14.3 0.2 0.07 13.4 0.2 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|352682999|ref|YP_004893523.1| - 0.037 14.0 0.8 0.59 10.1 0.2 2.3 1 1 1 2 2 2 0 FAD-NAD(P)-binding DAO PF01266.24 gi|352682999|ref|YP_004893523.1| - 0.17 11.5 1.2 1.1 8.8 1.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase DUF1641 PF07849.11 gi|352683000|ref|YP_004893524.1| - 2e-18 65.9 0.5 4.2e-18 64.9 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HisKA PF00512.25 gi|352683000|ref|YP_004893524.1| - 0.034 14.2 0.2 0.12 12.5 0.3 1.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain ATP-synt PF00231.19 gi|352683000|ref|YP_004893524.1| - 0.063 13.0 0.0 0.066 12.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase PEPcase_2 PF14010.6 gi|352683001|ref|YP_004893525.1| - 9.8e-110 367.4 0.0 2.9e-109 365.8 0.0 1.7 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|352683001|ref|YP_004893525.1| - 0.00017 19.8 0.0 0.00023 19.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase EamA PF00892.20 gi|352683002|ref|YP_004893526.1| - 5.6e-24 84.9 42.7 3.3e-14 53.2 19.9 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF296 PF03479.15 gi|352683003|ref|YP_004893527.1| - 5.2e-16 59.0 0.0 6.2e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain RNA_pol_Rpa2_4 PF06883.12 gi|352683003|ref|YP_004893527.1| - 0.049 13.6 0.1 0.94 9.5 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase I, Rpa2 specific domain Xan_ur_permease PF00860.20 gi|352683004|ref|YP_004893528.1| - 1e-22 80.4 54.9 6.3e-22 77.8 51.8 2.5 2 1 0 2 2 2 1 Permease family NTP_transf_3 PF12804.7 gi|352683005|ref|YP_004893529.1| - 7.8e-20 71.8 0.3 1.6e-19 70.8 0.2 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|352683005|ref|YP_004893529.1| - 0.073 12.8 0.0 0.54 9.9 0.0 2.2 2 0 0 2 2 2 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CobA_CobO_BtuR PF02572.15 gi|352683006|ref|YP_004893530.1| - 1.3e-35 123.2 0.1 1.8e-34 119.5 0.1 1.9 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IstB_IS21 PF01695.17 gi|352683006|ref|YP_004893530.1| - 0.14 11.8 0.7 9.1 6.0 0.0 2.1 1 1 0 2 2 2 0 IstB-like ATP binding protein AAA_25 PF13481.6 gi|352683006|ref|YP_004893530.1| - 0.35 10.4 1.1 1.2 8.7 0.0 2.0 1 1 1 2 2 2 0 AAA domain DBI_PRT PF02277.17 gi|352683007|ref|YP_004893531.1| - 2.8e-08 33.4 2.4 4.3e-08 32.8 2.4 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase Pyr_redox_2 PF07992.14 gi|352683008|ref|YP_004893532.1| - 9.8e-20 71.0 0.6 6.6e-14 51.8 0.2 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|352683008|ref|YP_004893532.1| - 1.1e-05 25.3 2.0 0.0051 16.4 0.1 2.8 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|352683008|ref|YP_004893532.1| - 5.9e-05 23.5 4.6 0.12 12.9 1.1 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|352683008|ref|YP_004893532.1| - 0.00029 20.0 0.0 0.00052 19.2 0.0 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|352683008|ref|YP_004893532.1| - 0.00075 19.7 0.1 0.0027 17.9 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|352683008|ref|YP_004893532.1| - 0.0015 18.6 0.8 0.032 14.2 0.1 2.8 3 0 0 3 3 3 1 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|352683008|ref|YP_004893532.1| - 0.0087 15.0 0.2 0.016 14.1 0.2 1.4 1 0 0 1 1 1 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|352683008|ref|YP_004893532.1| - 0.011 15.1 0.5 0.021 14.2 0.5 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|352683008|ref|YP_004893532.1| - 0.011 14.9 0.1 0.036 13.1 0.1 1.8 2 0 0 2 2 2 0 FAD binding domain NAD_binding_7 PF13241.6 gi|352683008|ref|YP_004893532.1| - 0.073 13.5 0.1 0.22 12.0 0.1 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding HI0933_like PF03486.14 gi|352683008|ref|YP_004893532.1| - 0.085 11.5 0.5 0.13 11.0 0.1 1.4 2 0 0 2 2 2 0 HI0933-like protein K_oxygenase PF13434.6 gi|352683008|ref|YP_004893532.1| - 0.16 11.1 0.1 0.37 9.9 0.0 1.6 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Aminotran_1_2 PF00155.21 gi|352683009|ref|YP_004893533.1| - 8.6e-20 71.2 0.0 3.8e-19 69.1 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.15 gi|352683010|ref|YP_004893534.1| - 7.2e-37 127.6 6.1 8.2e-37 127.4 6.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase Sensor PF13796.6 gi|352683010|ref|YP_004893534.1| - 0.19 11.8 11.9 11 6.1 11.9 2.5 1 1 0 1 1 1 0 Putative sensor Thiamine_BP PF01910.17 gi|352683011|ref|YP_004893535.1| - 3.2e-24 84.7 0.1 3.5e-24 84.5 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein FlpD PF02662.16 gi|352683011|ref|YP_004893535.1| - 0.09 12.8 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit Fiji_64_capsid PF05880.11 gi|352683011|ref|YP_004893535.1| - 0.097 11.3 0.1 0.099 11.2 0.1 1.1 1 0 0 1 1 1 0 Fijivirus 64 kDa capsid protein DUF2258 PF10015.9 gi|352683012|ref|YP_004893536.1| - 2.3e-26 91.7 0.8 4.1e-26 90.9 0.8 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) DASH_Dad1 PF08649.10 gi|352683012|ref|YP_004893536.1| - 0.073 13.3 0.2 1.9 8.8 0.0 2.4 2 0 0 2 2 2 0 DASH complex subunit Dad1 Bcr-Abl_Oligo PF09036.10 gi|352683012|ref|YP_004893536.1| - 0.11 12.5 0.5 2.8 8.0 0.1 2.6 3 0 0 3 3 3 0 Bcr-Abl oncoprotein oligomerisation domain FlaC_arch PF05377.11 gi|352683012|ref|YP_004893536.1| - 3.7 8.0 6.6 3.3 8.2 0.2 2.9 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) IGPS PF00218.21 gi|352683013|ref|YP_004893537.1| - 4.5e-49 166.9 0.0 5.3e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|352683013|ref|YP_004893537.1| - 3.4e-05 23.4 0.0 4.8e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|352683013|ref|YP_004893537.1| - 0.0018 17.3 0.2 0.003 16.6 0.2 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase NanE PF04131.14 gi|352683013|ref|YP_004893537.1| - 0.0027 16.9 0.0 0.0051 16.0 0.0 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|352683013|ref|YP_004893537.1| - 0.011 15.1 0.2 0.12 11.8 0.1 2.1 1 1 1 2 2 2 0 Nitronate monooxygenase Dus PF01207.17 gi|352683013|ref|YP_004893537.1| - 0.021 14.0 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|352683013|ref|YP_004893537.1| - 0.069 12.5 0.1 0.17 11.2 0.0 1.7 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG GATase PF00117.28 gi|352683014|ref|YP_004893538.1| - 1.1e-48 165.5 0.0 1.3e-48 165.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|352683014|ref|YP_004893538.1| - 1.6e-11 44.4 0.2 1.2e-10 41.5 0.2 2.1 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|352683014|ref|YP_004893538.1| - 0.14 12.0 0.0 0.26 11.1 0.0 1.4 2 0 0 2 2 2 0 SNO glutamine amidotransferase family Chorismate_bind PF00425.18 gi|352683015|ref|YP_004893539.1| - 1.4e-89 300.0 0.0 1.8e-89 299.7 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|352683015|ref|YP_004893539.1| - 5.9e-09 36.3 0.0 4.7e-07 30.1 0.0 2.7 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region DUF3195 PF11424.8 gi|352683016|ref|YP_004893540.1| - 1.7e-49 165.8 0.1 1.9e-49 165.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) Methyltransf_11 PF08241.12 gi|352683017|ref|YP_004893541.1| - 1.3e-05 25.8 0.0 1.9e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|352683017|ref|YP_004893541.1| - 1.7e-05 25.4 0.0 2.9e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|352683017|ref|YP_004893541.1| - 0.0035 17.2 0.0 0.0036 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|352683017|ref|YP_004893541.1| - 0.013 14.8 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|352683017|ref|YP_004893541.1| - 0.052 13.4 0.0 0.096 12.5 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain NfeD PF01957.18 gi|352683018|ref|YP_004893542.1| - 1e-10 41.9 0.2 1.5e-10 41.3 0.2 1.5 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF898 PF05987.13 gi|352683018|ref|YP_004893542.1| - 0.73 8.8 2.7 1 8.3 2.7 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF2000 PF09391.10 gi|352683019|ref|YP_004893543.1| - 0.039 13.9 0.0 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2000) Cdc6_C PF09079.11 gi|352683020|ref|YP_004893544.1| - 3.9e-21 74.8 0.0 1.6e-20 72.9 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|352683020|ref|YP_004893544.1| - 1.1e-07 32.4 0.1 3e-07 31.0 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|352683020|ref|YP_004893544.1| - 3.3e-07 30.6 0.0 1.2e-06 28.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|352683020|ref|YP_004893544.1| - 0.013 15.4 0.0 0.043 13.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|352683020|ref|YP_004893544.1| - 0.016 15.6 0.0 0.074 13.5 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Pox_A32 PF04665.12 gi|352683020|ref|YP_004893544.1| - 0.039 13.4 0.1 0.071 12.6 0.1 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_7 PF12775.7 gi|352683020|ref|YP_004893544.1| - 0.044 13.3 0.0 0.079 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|352683020|ref|YP_004893544.1| - 0.08 12.3 0.0 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|352683020|ref|YP_004893544.1| - 0.081 12.8 0.0 0.38 10.6 0.0 2.0 2 0 0 2 2 2 0 NACHT domain TniB PF05621.11 gi|352683020|ref|YP_004893544.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein ORC5_C PF14630.6 gi|352683020|ref|YP_004893544.1| - 0.17 11.4 0.2 1.4 8.3 0.0 2.1 1 1 0 2 2 2 0 Origin recognition complex (ORC) subunit 5 C-terminus PCP_red PF08369.10 gi|352683020|ref|YP_004893544.1| - 0.2 11.9 0.3 1.5 9.1 0.2 2.4 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit HTH_20 PF12840.7 gi|352683021|ref|YP_004893545.1| - 5.1e-11 42.5 0.7 1.4e-10 41.1 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|352683021|ref|YP_004893545.1| - 3.1e-09 36.6 0.2 7.3e-09 35.4 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|352683021|ref|YP_004893545.1| - 2.4e-07 30.2 1.5 4.5e-07 29.3 1.5 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|352683021|ref|YP_004893545.1| - 0.00033 20.4 0.1 0.00049 19.8 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_28 PF13518.6 gi|352683021|ref|YP_004893545.1| - 0.00033 20.7 0.9 0.00049 20.2 0.9 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|352683021|ref|YP_004893545.1| - 0.00046 20.1 1.4 0.00091 19.2 1.2 1.6 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|352683021|ref|YP_004893545.1| - 0.0015 18.4 0.2 0.0051 16.6 0.2 2.0 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_45 PF14947.6 gi|352683021|ref|YP_004893545.1| - 0.0028 17.6 0.1 0.0044 17.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix FaeA PF04703.12 gi|352683021|ref|YP_004893545.1| - 0.0059 17.0 0.2 0.0089 16.4 0.2 1.4 1 0 0 1 1 1 1 FaeA-like protein Rrf2 PF02082.20 gi|352683021|ref|YP_004893545.1| - 0.0065 16.8 0.2 0.0089 16.4 0.2 1.3 1 1 0 1 1 1 1 Transcriptional regulator HTH_Tnp_1 PF01527.20 gi|352683021|ref|YP_004893545.1| - 0.0087 16.4 0.1 0.018 15.4 0.1 1.6 1 1 0 1 1 1 1 Transposase HTH_34 PF13601.6 gi|352683021|ref|YP_004893545.1| - 0.022 14.9 0.1 0.034 14.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|352683021|ref|YP_004893545.1| - 0.023 14.6 1.1 0.095 12.6 0.2 2.0 2 0 0 2 2 2 0 MarR family HTH_10 PF04967.12 gi|352683021|ref|YP_004893545.1| - 0.025 14.4 0.2 0.071 12.9 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain MarR PF01047.22 gi|352683021|ref|YP_004893545.1| - 0.03 14.2 1.2 0.048 13.6 0.3 1.8 2 1 0 2 2 2 0 MarR family TrmB PF01978.19 gi|352683021|ref|YP_004893545.1| - 0.04 13.8 0.2 0.053 13.4 0.2 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RP-C PF03428.13 gi|352683021|ref|YP_004893545.1| - 0.046 13.4 1.1 0.096 12.3 0.1 1.9 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_36 PF13730.6 gi|352683021|ref|YP_004893545.1| - 0.35 10.8 1.9 0.53 10.3 0.2 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain AAA PF00004.29 gi|352683022|ref|YP_004893546.1| - 3.8e-17 62.9 0.0 3.1e-15 56.8 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta PF06144.13 gi|352683022|ref|YP_004893546.1| - 2.4e-07 30.7 0.0 1.3e-06 28.3 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_22 PF13401.6 gi|352683022|ref|YP_004893546.1| - 3.5e-07 30.6 0.7 0.00094 19.5 0.0 4.0 2 1 2 4 4 4 1 AAA domain AAA_5 PF07728.14 gi|352683022|ref|YP_004893546.1| - 1.3e-06 28.4 0.1 2.1e-05 24.6 0.0 2.6 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|352683022|ref|YP_004893546.1| - 1.4e-06 28.2 0.1 4.1e-05 23.4 0.0 3.0 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|352683022|ref|YP_004893546.1| - 3e-06 27.7 0.1 2.7e-05 24.6 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|352683022|ref|YP_004893546.1| - 1.4e-05 25.0 0.2 0.019 14.9 0.0 3.6 2 1 2 4 4 4 1 NACHT domain AAA_18 PF13238.6 gi|352683022|ref|YP_004893546.1| - 1.6e-05 25.5 0.0 6.6e-05 23.5 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_2 PF07724.14 gi|352683022|ref|YP_004893546.1| - 1.8e-05 24.9 0.0 9.3e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) Bac_DnaA PF00308.18 gi|352683022|ref|YP_004893546.1| - 1.8e-05 24.7 0.2 0.0003 20.7 0.1 2.6 1 1 1 2 2 2 1 Bacterial dnaA protein RNA_helicase PF00910.22 gi|352683022|ref|YP_004893546.1| - 2.7e-05 24.5 0.0 0.00023 21.5 0.0 2.4 2 0 0 2 2 2 1 RNA helicase AAA_assoc_2 PF16193.5 gi|352683022|ref|YP_004893546.1| - 3.2e-05 24.2 0.2 0.00011 22.5 0.0 2.0 2 0 0 2 2 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|352683022|ref|YP_004893546.1| - 3.5e-05 23.8 0.2 0.00018 21.5 0.1 2.2 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|352683022|ref|YP_004893546.1| - 8e-05 22.7 0.0 0.0012 18.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|352683022|ref|YP_004893546.1| - 0.00024 21.1 0.0 0.00067 19.6 0.0 1.8 2 0 0 2 2 1 1 RsgA GTPase NTPase_1 PF03266.15 gi|352683022|ref|YP_004893546.1| - 0.00039 20.4 0.0 0.0015 18.4 0.0 2.0 2 0 0 2 2 2 1 NTPase RFC1 PF08519.12 gi|352683022|ref|YP_004893546.1| - 0.00046 20.4 0.0 0.00082 19.6 0.0 1.4 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_33 PF13671.6 gi|352683022|ref|YP_004893546.1| - 0.00052 20.2 0.0 0.0016 18.7 0.0 1.9 2 0 0 2 2 1 1 AAA domain IstB_IS21 PF01695.17 gi|352683022|ref|YP_004893546.1| - 0.00074 19.3 0.0 0.023 14.4 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|352683022|ref|YP_004893546.1| - 0.00079 18.8 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin TIP49 PF06068.13 gi|352683022|ref|YP_004893546.1| - 0.00094 18.5 0.2 0.0027 17.0 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|352683022|ref|YP_004893546.1| - 0.0011 18.2 0.0 0.0032 16.7 0.0 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|352683022|ref|YP_004893546.1| - 0.0012 18.4 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|352683022|ref|YP_004893546.1| - 0.0012 19.2 0.0 0.0035 17.6 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.6 gi|352683022|ref|YP_004893546.1| - 0.002 18.5 0.0 0.023 15.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|352683022|ref|YP_004893546.1| - 0.0044 16.1 0.0 0.0096 15.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|352683022|ref|YP_004893546.1| - 0.0065 16.1 0.0 0.032 13.8 0.0 2.1 3 0 0 3 3 2 1 AAA domain TsaE PF02367.17 gi|352683022|ref|YP_004893546.1| - 0.0083 16.1 0.0 0.017 15.2 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFG1_ATPase PF03969.16 gi|352683022|ref|YP_004893546.1| - 0.0092 14.9 0.4 0.31 9.9 0.0 2.6 3 0 0 3 3 3 1 AFG1-like ATPase AAA_3 PF07726.11 gi|352683022|ref|YP_004893546.1| - 0.013 15.4 0.0 0.031 14.1 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|352683022|ref|YP_004893546.1| - 0.016 14.9 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_11 PF13086.6 gi|352683022|ref|YP_004893546.1| - 0.017 15.0 0.0 0.03 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|352683022|ref|YP_004893546.1| - 0.02 14.3 0.0 0.061 12.7 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI HEAT_2 PF13646.6 gi|352683022|ref|YP_004893546.1| - 0.026 14.9 1.1 5.4 7.5 0.1 3.1 3 0 0 3 3 3 0 HEAT repeats MMR_HSR1 PF01926.23 gi|352683022|ref|YP_004893546.1| - 0.026 14.6 0.0 0.051 13.7 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|352683022|ref|YP_004893546.1| - 0.034 13.9 0.0 0.062 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|352683022|ref|YP_004893546.1| - 0.039 14.5 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.6 gi|352683022|ref|YP_004893546.1| - 0.062 13.0 0.0 0.21 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|352683022|ref|YP_004893546.1| - 0.07 12.8 0.0 0.64 9.7 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain GREB1 PF15782.5 gi|352683022|ref|YP_004893546.1| - 0.078 10.1 0.0 0.095 9.8 0.0 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer AAA_19 PF13245.6 gi|352683022|ref|YP_004893546.1| - 0.087 13.2 0.0 0.21 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|352683022|ref|YP_004893546.1| - 0.11 12.4 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Deoxynucleoside kinase PriX PF18689.1 gi|352683022|ref|YP_004893546.1| - 0.13 12.6 0.8 0.53 10.7 0.0 2.3 2 0 0 2 2 2 0 Primase X SRP54 PF00448.22 gi|352683022|ref|YP_004893546.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 gi|352683022|ref|YP_004893546.1| - 0.18 11.5 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Rep_fac_C PF08542.11 gi|352683023|ref|YP_004893547.1| - 4.3e-18 65.5 0.4 1.3e-17 63.9 0.2 2.0 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|352683023|ref|YP_004893547.1| - 2.8e-15 56.9 0.0 7.7e-15 55.5 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|352683023|ref|YP_004893547.1| - 8.5e-14 51.7 0.0 4.2e-09 36.4 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|352683023|ref|YP_004893547.1| - 4.4e-08 33.0 0.0 1.4e-07 31.4 0.0 1.9 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|352683023|ref|YP_004893547.1| - 1.2e-07 32.3 0.9 0.0013 19.2 0.0 2.9 2 2 1 3 3 3 2 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|352683023|ref|YP_004893547.1| - 1.5e-06 28.5 0.9 3.5e-06 27.3 0.2 2.0 2 0 0 2 2 1 1 AAA C-terminal domain Rad17 PF03215.15 gi|352683023|ref|YP_004893547.1| - 4.8e-06 26.6 0.0 9.3e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|352683023|ref|YP_004893547.1| - 5.5e-06 26.7 0.1 0.05 13.9 0.0 2.7 1 1 1 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|352683023|ref|YP_004893547.1| - 2e-05 24.4 0.0 4.1e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_3 PF07726.11 gi|352683023|ref|YP_004893547.1| - 6.1e-05 22.9 0.0 0.00013 21.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|352683023|ref|YP_004893547.1| - 0.0001 22.3 0.0 0.00019 21.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|352683023|ref|YP_004893547.1| - 0.00013 22.0 0.1 0.00056 19.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|352683023|ref|YP_004893547.1| - 0.00014 21.5 0.1 0.00041 20.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|352683023|ref|YP_004893547.1| - 0.00014 22.0 0.1 0.00043 20.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|352683023|ref|YP_004893547.1| - 0.00023 20.6 0.0 0.0074 15.7 0.0 2.7 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|352683023|ref|YP_004893547.1| - 0.00032 20.7 0.0 0.0033 17.5 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_11 PF13086.6 gi|352683023|ref|YP_004893547.1| - 0.00088 19.1 0.0 0.002 18.0 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352683023|ref|YP_004893547.1| - 0.001 19.7 0.0 0.0049 17.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|352683023|ref|YP_004893547.1| - 0.0011 18.8 0.5 0.0043 16.8 0.1 2.2 2 2 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|352683023|ref|YP_004893547.1| - 0.0027 18.0 0.1 0.0073 16.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|352683023|ref|YP_004893547.1| - 0.0054 16.2 0.5 0.77 9.2 0.0 2.4 1 1 1 2 2 2 1 PhoH-like protein AAA_7 PF12775.7 gi|352683023|ref|YP_004893547.1| - 0.0057 16.2 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|352683023|ref|YP_004893547.1| - 0.0065 15.8 0.4 0.74 9.1 0.0 3.3 2 2 2 4 4 4 1 FtsK/SpoIIIE family DEAD PF00270.29 gi|352683023|ref|YP_004893547.1| - 0.0066 16.2 0.2 0.15 11.8 0.0 2.2 1 1 0 2 2 2 1 DEAD/DEAH box helicase TniB PF05621.11 gi|352683023|ref|YP_004893547.1| - 0.0088 15.5 0.7 0.23 10.9 0.0 2.9 2 1 0 3 3 3 1 Bacterial TniB protein T2SSE PF00437.20 gi|352683023|ref|YP_004893547.1| - 0.012 14.7 0.0 0.16 11.0 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|352683023|ref|YP_004893547.1| - 0.014 15.7 0.0 0.038 14.4 0.0 1.7 2 0 0 2 2 1 0 RNA helicase AAA_28 PF13521.6 gi|352683023|ref|YP_004893547.1| - 0.016 15.4 0.2 0.044 14.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain TIP49_C PF17856.1 gi|352683023|ref|YP_004893547.1| - 0.024 14.7 0.2 0.077 13.1 0.2 1.8 1 0 0 1 1 1 0 TIP49 AAA-lid domain TIP49 PF06068.13 gi|352683023|ref|YP_004893547.1| - 0.025 13.8 0.0 0.043 13.0 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain DNA_pol3_delta PF06144.13 gi|352683023|ref|YP_004893547.1| - 0.038 13.8 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|352683023|ref|YP_004893547.1| - 0.05 13.3 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein MeaB PF03308.16 gi|352683023|ref|YP_004893547.1| - 0.064 12.2 0.2 1 8.3 0.0 2.3 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF2075 PF09848.9 gi|352683023|ref|YP_004893547.1| - 0.076 12.2 0.0 1 8.5 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|352683023|ref|YP_004893547.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Ribosomal_S7 PF00177.21 gi|352683024|ref|YP_004893548.1| - 1e-41 142.1 0.1 1.2e-41 141.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF99 PF01949.16 gi|352683026|ref|YP_004893550.1| - 1.3e-51 174.6 0.0 1.5e-51 174.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Fer4 PF00037.27 gi|352683027|ref|YP_004893551.1| - 2.2e-05 24.1 6.6 0.00097 18.9 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|352683027|ref|YP_004893551.1| - 0.00023 21.3 6.0 0.00023 21.3 6.0 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352683027|ref|YP_004893551.1| - 0.0021 18.0 10.9 0.057 13.5 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|352683027|ref|YP_004893551.1| - 0.0038 17.3 7.0 0.0085 16.2 7.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|352683027|ref|YP_004893551.1| - 0.0089 16.1 5.3 0.018 15.1 5.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|352683027|ref|YP_004893551.1| - 0.011 15.8 11.6 0.34 11.1 2.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.7 gi|352683027|ref|YP_004893551.1| - 0.16 12.6 7.9 0.13 12.8 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352683027|ref|YP_004893551.1| - 0.65 11.0 6.8 0.25 12.3 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|352683027|ref|YP_004893551.1| - 5.4 8.2 12.3 1.7 9.8 4.5 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain MTHFR_C PF12225.8 gi|352683027|ref|YP_004893551.1| - 8 6.2 10.7 7.4 6.3 1.2 2.3 1 1 1 2 2 2 0 Methylene-tetrahydrofolate reductase C terminal CxxCxxCC PF03692.15 gi|352683028|ref|YP_004893552.1| - 1.7e-08 35.0 0.0 2.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Ribosomal_L14e PF01929.17 gi|352683029|ref|YP_004893553.1| - 0.00011 22.6 0.2 0.0002 21.8 0.1 1.4 2 0 0 2 2 2 1 Ribosomal protein L14 KOW PF00467.29 gi|352683029|ref|YP_004893553.1| - 0.0089 16.0 5.6 0.021 14.7 5.6 1.7 1 0 0 1 1 1 1 KOW motif ParG PF09274.10 gi|352683029|ref|YP_004893553.1| - 0.13 12.4 0.6 0.26 11.4 0.6 1.6 1 1 0 1 1 1 0 ParG TruB_N PF01509.18 gi|352683031|ref|YP_004893555.1| - 1.7e-23 83.7 0.0 7.4e-20 71.8 0.0 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) PUA PF01472.20 gi|352683031|ref|YP_004893555.1| - 1.5e-22 79.4 0.1 3e-22 78.3 0.1 1.6 1 0 0 1 1 1 1 PUA domain TruB_C_2 PF16198.5 gi|352683031|ref|YP_004893555.1| - 7.4e-21 74.1 0.0 1.5e-20 73.1 0.0 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain DKCLD PF08068.12 gi|352683031|ref|YP_004893555.1| - 1.8e-15 56.7 0.1 4.1e-15 55.6 0.1 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF211 PF02680.14 gi|352683032|ref|YP_004893556.1| - 9.8e-27 92.9 9.6 1.1e-26 92.8 9.6 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 NikR_C PF08753.11 gi|352683032|ref|YP_004893556.1| - 0.0059 16.7 2.0 0.6 10.3 0.4 2.1 2 0 0 2 2 2 2 NikR C terminal nickel binding domain HMA PF00403.26 gi|352683032|ref|YP_004893556.1| - 0.32 11.5 7.5 0.87 10.1 6.7 2.1 1 1 1 2 2 2 0 Heavy-metal-associated domain VIT1 PF01988.19 gi|352683033|ref|YP_004893557.1| - 0.0088 15.9 9.5 0.55 10.1 2.1 2.3 1 1 1 2 2 2 2 VIT family OrfB_Zn_ribbon PF07282.11 gi|352683034|ref|YP_004893558.1| - 3.3e-26 91.0 0.1 6.1e-26 90.1 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|352683034|ref|YP_004893558.1| - 0.026 14.5 0.0 0.066 13.2 0.0 1.7 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_3 PF13878.6 gi|352683034|ref|YP_004893558.1| - 0.028 14.2 0.5 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.7 gi|352683034|ref|YP_004893558.1| - 0.034 14.2 0.6 0.057 13.4 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Arm-DNA-bind_2 PF12167.8 gi|352683034|ref|YP_004893558.1| - 0.036 14.0 0.0 0.094 12.6 0.0 1.7 1 0 0 1 1 1 0 Arm DNA-binding domain NRDD PF13597.6 gi|352683034|ref|YP_004893558.1| - 0.12 11.1 0.3 0.23 10.2 0.2 1.5 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase GFO_IDH_MocA PF01408.22 gi|352683037|ref|YP_004893561.1| - 3.2e-19 69.9 0.0 5.6e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|352683037|ref|YP_004893561.1| - 0.00019 21.8 0.0 0.00078 19.9 0.0 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|352683037|ref|YP_004893561.1| - 0.014 16.0 0.0 0.034 14.8 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain GFO_IDH_MocA_C PF02894.17 gi|352683037|ref|YP_004893561.1| - 0.024 14.6 0.0 0.068 13.2 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain MoCF_biosynth PF00994.24 gi|352683038|ref|YP_004893562.1| - 2.2e-38 131.1 0.0 2.9e-38 130.8 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain AhpC-TSA PF00578.21 gi|352683039|ref|YP_004893563.1| - 8.8e-29 99.9 0.0 1.1e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|352683039|ref|YP_004893563.1| - 9e-20 70.9 0.0 1e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|352683039|ref|YP_004893563.1| - 0.0001 22.4 0.0 0.00011 22.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|352683039|ref|YP_004893563.1| - 0.18 12.1 0.0 0.25 11.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like NTPase_1 PF03266.15 gi|352683040|ref|YP_004893564.1| - 2.8e-42 144.5 0.0 3.1e-42 144.3 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|352683040|ref|YP_004893564.1| - 5.9e-07 29.2 1.0 1.5e-06 27.9 1.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_22 PF13401.6 gi|352683040|ref|YP_004893564.1| - 3.2e-05 24.2 0.0 0.00012 22.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|352683040|ref|YP_004893564.1| - 4e-05 24.1 0.1 0.00012 22.5 0.1 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|352683040|ref|YP_004893564.1| - 9.2e-05 22.2 1.5 0.00039 20.2 1.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|352683040|ref|YP_004893564.1| - 0.00013 21.8 0.0 0.00038 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352683040|ref|YP_004893564.1| - 0.00014 22.4 0.0 0.00024 21.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|352683040|ref|YP_004893564.1| - 0.00026 20.8 0.1 0.0066 16.2 0.1 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|352683040|ref|YP_004893564.1| - 0.0016 18.7 0.1 0.0061 16.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|352683040|ref|YP_004893564.1| - 0.0017 18.8 0.3 0.002 18.5 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|352683040|ref|YP_004893564.1| - 0.0032 17.2 0.1 0.038 13.7 0.1 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|352683040|ref|YP_004893564.1| - 0.0052 16.7 0.1 0.013 15.4 0.1 1.7 2 0 0 2 2 2 1 NACHT domain AAA_5 PF07728.14 gi|352683040|ref|YP_004893564.1| - 0.0063 16.5 0.3 0.035 14.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|352683040|ref|YP_004893564.1| - 0.0074 16.4 0.1 0.0098 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|352683040|ref|YP_004893564.1| - 0.0098 15.5 0.2 0.023 14.3 0.1 1.6 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|352683040|ref|YP_004893564.1| - 0.02 14.5 0.1 0.29 10.7 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|352683040|ref|YP_004893564.1| - 0.021 15.1 0.4 0.61 10.4 0.3 2.1 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|352683040|ref|YP_004893564.1| - 0.023 14.8 0.0 0.061 13.4 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|352683040|ref|YP_004893564.1| - 0.025 13.8 0.1 0.026 13.7 0.1 1.3 1 1 0 1 1 1 0 NB-ARC domain Arteri_GP4 PF02497.15 gi|352683040|ref|YP_004893564.1| - 0.041 14.0 0.0 0.068 13.3 0.0 1.3 1 0 0 1 1 1 0 Arterivirus glycoprotein MeaB PF03308.16 gi|352683040|ref|YP_004893564.1| - 0.059 12.3 3.1 0.44 9.5 2.4 2.0 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Viral_helicase1 PF01443.18 gi|352683040|ref|YP_004893564.1| - 0.062 13.0 0.1 1.5 8.5 0.0 2.0 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.6 gi|352683040|ref|YP_004893564.1| - 0.063 13.7 0.2 0.14 12.6 0.1 1.6 2 0 0 2 2 2 0 AAA domain FeoB_N PF02421.18 gi|352683040|ref|YP_004893564.1| - 0.068 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_14 PF13173.6 gi|352683040|ref|YP_004893564.1| - 0.084 12.9 0.0 0.5 10.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|352683040|ref|YP_004893564.1| - 0.19 11.0 0.0 0.59 9.4 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain CbiA PF01656.23 gi|352683040|ref|YP_004893564.1| - 0.22 11.6 0.2 0.39 10.8 0.2 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_11 PF13086.6 gi|352683040|ref|YP_004893564.1| - 0.32 10.7 0.5 0.87 9.3 0.1 1.9 1 1 0 2 2 2 0 AAA domain PadR PF03551.14 gi|352683041|ref|YP_004893565.1| - 5.4e-18 64.7 0.0 1.2e-17 63.6 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|352683041|ref|YP_004893565.1| - 0.00034 19.1 0.0 0.00046 18.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_42 PF06224.12 gi|352683041|ref|YP_004893565.1| - 0.00036 20.2 0.0 0.00042 20.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|352683041|ref|YP_004893565.1| - 0.0014 18.4 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) RTP PF02334.16 gi|352683041|ref|YP_004893565.1| - 0.0025 18.4 0.0 0.0033 18.1 0.0 1.3 1 0 0 1 1 1 1 Replication terminator protein HTH_11 PF08279.12 gi|352683041|ref|YP_004893565.1| - 0.0054 16.7 0.3 1.7 8.6 0.1 2.4 2 0 0 2 2 2 1 HTH domain FUR PF01475.19 gi|352683041|ref|YP_004893565.1| - 0.01 16.0 0.0 0.039 14.1 0.0 1.9 2 1 0 2 2 2 0 Ferric uptake regulator family Replic_Relax PF13814.6 gi|352683041|ref|YP_004893565.1| - 0.03 14.4 0.0 0.035 14.2 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Penicillinase_R PF03965.16 gi|352683041|ref|YP_004893565.1| - 0.034 14.5 0.0 0.046 14.1 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor PaaX PF07848.12 gi|352683041|ref|YP_004893565.1| - 0.043 14.0 0.0 0.15 12.3 0.0 1.9 2 0 0 2 2 2 0 PaaX-like protein TrmB PF01978.19 gi|352683041|ref|YP_004893565.1| - 0.044 13.7 0.2 0.25 11.3 0.1 2.2 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|352683041|ref|YP_004893565.1| - 0.048 13.6 0.0 11 6.1 0.1 2.4 2 0 0 2 2 2 0 MarR family AphA_like PF14557.6 gi|352683041|ref|YP_004893565.1| - 0.062 13.0 0.0 0.07 12.8 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator HTH_45 PF14947.6 gi|352683041|ref|YP_004893565.1| - 0.065 13.2 0.0 0.17 11.9 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix Mrr_N PF14338.6 gi|352683041|ref|YP_004893565.1| - 0.071 13.3 0.3 23 5.2 0.0 3.0 3 0 0 3 3 3 0 Mrr N-terminal domain GntR PF00392.21 gi|352683041|ref|YP_004893565.1| - 0.075 12.7 0.0 1 9.0 0.0 2.6 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|352683041|ref|YP_004893565.1| - 0.15 11.7 1.2 3.7 7.2 0.2 3.0 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|352683041|ref|YP_004893565.1| - 0.16 11.9 0.0 4.1 7.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family AIRS_C PF02769.22 gi|352683042|ref|YP_004893566.1| - 9.2e-22 77.8 1.7 9.8e-22 77.8 0.7 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|352683042|ref|YP_004893566.1| - 2.2e-14 53.9 2.7 2.3e-14 53.8 0.2 2.3 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain PaRep2b PF07775.11 gi|352683043|ref|YP_004893567.1| - 2.8e-11 42.6 2.4 4.5e-11 41.9 1.0 1.8 1 1 1 2 2 2 2 PaRep2b protein Secretin_N PF03958.17 gi|352683043|ref|YP_004893567.1| - 0.053 13.9 0.7 0.21 12.0 0.1 2.3 3 0 0 3 3 3 0 Bacterial type II/III secretion system short domain polyprenyl_synt PF00348.17 gi|352683045|ref|YP_004893569.1| - 4.6e-30 104.5 0.1 7.1e-30 103.9 0.1 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase HTH_11 PF08279.12 gi|352683046|ref|YP_004893570.1| - 0.00012 22.0 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain FaeA PF04703.12 gi|352683046|ref|YP_004893570.1| - 0.013 15.8 0.1 0.018 15.4 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein MarR_2 PF12802.7 gi|352683046|ref|YP_004893570.1| - 0.016 15.1 0.0 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 MarR family Lipoprotein_Ltp PF07553.11 gi|352683046|ref|YP_004893570.1| - 0.017 15.4 0.1 0.029 14.6 0.1 1.4 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein LexA_DNA_bind PF01726.16 gi|352683046|ref|YP_004893570.1| - 0.022 14.6 0.0 0.024 14.4 0.0 1.1 1 0 0 1 1 1 0 LexA DNA binding domain TrmB PF01978.19 gi|352683046|ref|YP_004893570.1| - 0.035 14.0 0.2 0.048 13.6 0.2 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|352683046|ref|YP_004893570.1| - 0.037 14.0 0.4 0.16 11.9 0.2 2.0 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain DUF3253 PF11625.8 gi|352683046|ref|YP_004893570.1| - 0.039 14.2 0.0 0.059 13.6 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3253) HTH_Crp_2 PF13545.6 gi|352683046|ref|YP_004893570.1| - 0.044 13.8 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Sigma70_r3 PF04539.16 gi|352683046|ref|YP_004893570.1| - 0.051 13.7 0.1 0.12 12.5 0.0 1.6 1 1 1 2 2 2 0 Sigma-70 region 3 GntR PF00392.21 gi|352683046|ref|YP_004893570.1| - 0.055 13.1 0.1 0.061 13.0 0.1 1.3 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF1495 PF07381.11 gi|352683046|ref|YP_004893570.1| - 0.06 13.2 0.0 0.07 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Terminase_5 PF06056.12 gi|352683046|ref|YP_004893570.1| - 0.064 13.2 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) PaaX PF07848.12 gi|352683046|ref|YP_004893570.1| - 0.071 13.3 0.1 0.089 13.0 0.1 1.1 1 0 0 1 1 1 0 PaaX-like protein HemN_C PF06969.16 gi|352683046|ref|YP_004893570.1| - 0.1 12.7 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 HemN C-terminal domain AbiEi_4 PF13338.6 gi|352683046|ref|YP_004893570.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin HTH_24 PF13412.6 gi|352683046|ref|YP_004893570.1| - 0.14 11.7 0.0 1.5 8.5 0.0 2.1 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DMRL_synthase PF00885.19 gi|352683047|ref|YP_004893571.1| - 6.4e-33 113.6 3.8 7.2e-33 113.4 3.8 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Ribosomal_S18 PF01084.20 gi|352683047|ref|YP_004893571.1| - 0.34 11.2 1.6 9 6.6 0.0 2.3 2 0 0 2 2 2 0 Ribosomal protein S18 DUF4515 PF14988.6 gi|352683048|ref|YP_004893572.1| - 0.0041 17.0 0.8 0.0062 16.4 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4515) Laminin_II PF06009.12 gi|352683048|ref|YP_004893572.1| - 0.0047 17.0 1.9 0.011 15.7 1.1 1.9 1 1 0 2 2 2 1 Laminin Domain II Nup54 PF13874.6 gi|352683048|ref|YP_004893572.1| - 0.0061 16.7 1.8 0.0096 16.0 1.4 1.5 1 1 0 1 1 1 1 Nucleoporin complex subunit 54 CorA PF01544.18 gi|352683048|ref|YP_004893572.1| - 0.011 15.1 1.6 0.015 14.6 1.6 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein CdvA PF18822.1 gi|352683048|ref|YP_004893572.1| - 0.019 14.8 6.4 0.14 12.0 2.5 3.1 1 1 1 2 2 2 0 CdvA-like coiled-coil domain LXG PF04740.12 gi|352683048|ref|YP_004893572.1| - 0.033 13.9 0.7 0.073 12.8 0.5 1.7 1 1 1 2 2 2 0 LXG domain of WXG superfamily Cortex-I_coil PF09304.10 gi|352683048|ref|YP_004893572.1| - 0.042 14.1 7.8 0.055 13.7 5.5 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil THOC7 PF05615.13 gi|352683048|ref|YP_004893572.1| - 0.043 14.1 3.7 0.085 13.1 3.7 1.6 1 1 0 1 1 1 0 Tho complex subunit 7 bZIP_2 PF07716.15 gi|352683048|ref|YP_004893572.1| - 0.043 13.9 5.9 0.31 11.2 0.3 2.7 2 0 0 2 2 2 0 Basic region leucine zipper Spc7 PF08317.11 gi|352683048|ref|YP_004893572.1| - 0.043 12.7 5.4 0.42 9.4 4.8 2.2 1 1 0 1 1 1 0 Spc7 kinetochore protein Rad33 PF08730.10 gi|352683048|ref|YP_004893572.1| - 0.074 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Rad33 SHOCT PF09851.9 gi|352683048|ref|YP_004893572.1| - 0.081 12.7 11.4 0.13 12.0 0.4 3.6 3 1 1 4 4 4 0 Short C-terminal domain Noelin-1 PF12308.8 gi|352683048|ref|YP_004893572.1| - 0.12 12.3 0.6 0.52 10.3 0.4 2.0 1 1 1 2 2 2 0 Neurogenesis glycoprotein XhlA PF10779.9 gi|352683048|ref|YP_004893572.1| - 0.13 12.4 3.7 0.43 10.8 0.1 2.8 3 1 1 4 4 3 0 Haemolysin XhlA FlaC_arch PF05377.11 gi|352683048|ref|YP_004893572.1| - 0.15 12.5 0.3 46 4.5 0.0 3.2 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|352683048|ref|YP_004893572.1| - 0.15 12.1 1.8 1.6 8.8 0.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|352683048|ref|YP_004893572.1| - 0.16 12.2 2.4 6.2 7.2 0.1 2.7 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PRKG1_interact PF15898.5 gi|352683048|ref|YP_004893572.1| - 0.19 12.7 3.0 0.21 12.5 0.4 2.2 2 1 0 2 2 2 0 cGMP-dependent protein kinase interacting domain DUF2203 PF09969.9 gi|352683048|ref|YP_004893572.1| - 0.57 10.9 5.1 0.69 10.7 3.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) FlgN PF05130.12 gi|352683048|ref|YP_004893572.1| - 0.79 10.2 6.8 1.2 9.6 4.3 2.0 1 1 1 2 2 2 0 FlgN protein CCDC-167 PF15188.6 gi|352683048|ref|YP_004893572.1| - 0.97 9.8 5.9 1.9 8.9 0.2 2.9 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 Rx_N PF18052.1 gi|352683048|ref|YP_004893572.1| - 1.3 9.3 6.0 3.8 7.8 2.6 3.1 1 1 2 3 3 3 0 Rx N-terminal domain Atg14 PF10186.9 gi|352683048|ref|YP_004893572.1| - 1.8 7.6 3.7 2.3 7.3 3.2 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CdvA PF18822.1 gi|352683049|ref|YP_004893573.1| - 0.0004 20.2 11.9 0.017 14.9 0.2 2.8 2 1 0 2 2 2 2 CdvA-like coiled-coil domain SHOCT PF09851.9 gi|352683049|ref|YP_004893573.1| - 0.012 15.3 3.7 0.012 15.3 3.7 2.4 3 0 0 3 3 3 0 Short C-terminal domain Baculo_PEP_C PF04513.12 gi|352683049|ref|YP_004893573.1| - 0.034 14.2 1.7 2.5 8.2 0.2 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.12 gi|352683049|ref|YP_004893573.1| - 0.043 14.3 0.1 0.043 14.3 0.1 2.7 2 2 0 2 2 2 0 Nucleopolyhedrovirus P10 protein GvpG PF05120.12 gi|352683049|ref|YP_004893573.1| - 0.062 13.3 0.1 0.062 13.3 0.1 3.0 3 0 0 3 3 3 0 Gas vesicle protein G ApoO PF09769.9 gi|352683049|ref|YP_004893573.1| - 0.19 11.7 2.4 0.78 9.7 0.2 2.5 1 1 1 2 2 2 0 Apolipoprotein O zf-CpG_bind_C PF12269.8 gi|352683049|ref|YP_004893573.1| - 0.22 11.3 3.0 0.69 9.6 0.6 2.3 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain GAS PF13851.6 gi|352683049|ref|YP_004893573.1| - 0.26 10.6 16.7 0.12 11.7 9.4 2.7 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding CorA PF01544.18 gi|352683049|ref|YP_004893573.1| - 0.34 10.2 8.5 0.24 10.7 6.1 1.8 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF2293 PF10056.9 gi|352683049|ref|YP_004893573.1| - 0.51 10.6 2.5 9.3 6.6 0.2 3.0 2 2 0 3 3 3 0 Uncharacterized conserved protein (DUF2293) CCDC-167 PF15188.6 gi|352683049|ref|YP_004893573.1| - 0.78 10.1 14.6 1.6 9.2 3.6 3.2 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 DUF4709 PF15821.5 gi|352683049|ref|YP_004893573.1| - 1.8 8.9 10.4 0.27 11.5 2.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4709) Syntaxin-6_N PF09177.11 gi|352683049|ref|YP_004893573.1| - 5.2 7.7 12.4 0.18 12.4 2.1 2.9 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Fib_alpha PF08702.10 gi|352683049|ref|YP_004893573.1| - 5.4 7.2 11.4 2.5 8.3 0.5 2.8 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DMAP_binding PF06464.11 gi|352683049|ref|YP_004893573.1| - 6.1 7.7 9.3 0.18 12.6 1.0 2.5 2 1 1 3 3 3 0 DMAP1-binding Domain POX PF07526.11 gi|352683049|ref|YP_004893573.1| - 6.4 7.3 8.5 0.85 10.2 1.6 2.2 1 1 1 2 2 2 0 Associated with HOX Cortex-I_coil PF09304.10 gi|352683049|ref|YP_004893573.1| - 8 6.7 16.8 15 5.8 0.5 3.5 1 1 3 4 4 4 0 Cortexillin I, coiled coil NTP_transferase PF00483.23 gi|352683050|ref|YP_004893574.1| - 1.7e-24 86.8 0.0 2.4e-24 86.2 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|352683050|ref|YP_004893574.1| - 1.3e-09 38.6 0.0 1.7e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain PfkB PF00294.24 gi|352683052|ref|YP_004893576.1| - 1.4e-55 188.8 1.1 1.7e-55 188.5 1.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|352683052|ref|YP_004893576.1| - 0.0008 18.9 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ADH_zinc_N_2 PF13602.6 gi|352683052|ref|YP_004893576.1| - 0.06 14.4 0.2 0.18 12.9 0.1 1.8 2 0 0 2 2 2 0 Zinc-binding dehydrogenase TruB-C_2 PF09157.11 gi|352683053|ref|YP_004893577.1| - 0.12 12.4 0.1 0.86 9.7 0.0 2.4 3 0 0 3 3 3 0 Pseudouridine synthase II TruB, C-terminal DNA_ligase_A_M PF01068.21 gi|352683054|ref|YP_004893578.1| - 6.8e-63 212.0 0.0 1.1e-62 211.3 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|352683054|ref|YP_004893578.1| - 6.1e-39 134.1 0.3 1.3e-38 133.1 0.3 1.5 1 1 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|352683054|ref|YP_004893578.1| - 3.2e-23 82.2 0.0 8.5e-23 80.8 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|352683054|ref|YP_004893578.1| - 5.7e-06 26.7 0.0 9.7e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 RNA ligase LZ3wCH PF18517.1 gi|352683054|ref|YP_004893578.1| - 0.03 14.4 0.0 0.094 12.8 0.0 1.9 1 0 0 1 1 1 0 Leucine zipper with capping helix domain DNA_ligase_OB_2 PF14743.6 gi|352683054|ref|YP_004893578.1| - 0.034 14.2 0.4 0.13 12.3 0.0 2.2 3 0 0 3 3 3 0 DNA ligase OB-like domain CYTH PF01928.21 gi|352683055|ref|YP_004893579.1| - 5e-34 117.8 1.8 5.6e-34 117.6 1.8 1.0 1 0 0 1 1 1 1 CYTH domain Peptidase_M6 PF05547.11 gi|352683055|ref|YP_004893579.1| - 0.17 10.2 0.0 0.22 9.8 0.0 1.2 1 0 0 1 1 1 0 Immune inhibitor A peptidase M6 DUF1525 PF07511.11 gi|352683056|ref|YP_004893580.1| - 1.2e-05 25.4 1.1 3.3e-05 24.0 1.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1525) Thioredoxin_3 PF13192.6 gi|352683056|ref|YP_004893580.1| - 0.0035 17.4 0.3 0.01 15.9 0.0 2.0 3 0 0 3 3 3 1 Thioredoxin domain TPR_21 PF09976.9 gi|352683056|ref|YP_004893580.1| - 0.18 11.5 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Tetratricopeptide repeat-like domain AMMECR1 PF01871.17 gi|352683057|ref|YP_004893581.1| - 8e-06 25.6 0.0 1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 DUF3809 PF12723.7 gi|352683057|ref|YP_004893581.1| - 0.027 14.8 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3809) PEGA PF08308.11 gi|352683058|ref|YP_004893582.1| - 0.23 11.4 8.4 0.91 9.5 0.0 4.4 5 0 0 5 5 5 0 PEGA domain FixG_C PF11614.8 gi|352683059|ref|YP_004893583.1| - 0.074 13.3 1.0 0.89 9.8 0.1 2.9 2 1 0 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase CBM64 PF18666.1 gi|352683059|ref|YP_004893583.1| - 0.75 9.9 3.0 4.9 7.3 0.0 3.5 4 1 0 4 4 4 0 Carbohydrate-binding module 64 fn3_5 PF06280.12 gi|352683059|ref|YP_004893583.1| - 0.94 10.2 9.6 0.43 11.3 0.6 4.0 4 1 0 4 4 4 0 Fn3-like domain Enolase_C PF00113.22 gi|352683060|ref|YP_004893584.1| - 7.4e-52 176.4 0.0 9.9e-52 176.0 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|352683060|ref|YP_004893584.1| - 7.4e-30 103.8 0.0 1.2e-29 103.1 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|352683060|ref|YP_004893584.1| - 6e-11 42.3 0.0 1.1e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like tRNA-synt_1e PF01406.19 gi|352683061|ref|YP_004893585.1| - 1.4e-111 372.7 0.0 2e-111 372.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|352683061|ref|YP_004893585.1| - 2.9e-08 32.4 0.0 4.9e-08 31.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|352683061|ref|YP_004893585.1| - 8.5e-08 31.3 0.1 1.6e-05 23.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|352683061|ref|YP_004893585.1| - 1.8e-07 31.5 0.8 1.7e-06 28.4 0.2 2.3 1 1 1 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|352683061|ref|YP_004893585.1| - 3.6e-07 29.4 0.2 0.00029 19.9 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (K) DUF1722 PF08349.11 gi|352683061|ref|YP_004893585.1| - 0.03 14.6 0.0 0.11 12.7 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1722) Helicase_C_3 PF13625.6 gi|352683061|ref|YP_004893585.1| - 0.11 12.7 0.9 0.22 11.7 0.9 1.5 1 0 0 1 1 1 0 Helicase conserved C-terminal domain PK PF00224.21 gi|352683062|ref|YP_004893586.1| - 2e-70 237.4 0.1 2.9e-70 236.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain HpcH_HpaI PF03328.14 gi|352683062|ref|YP_004893586.1| - 5.5e-07 28.9 0.2 9.4e-07 28.2 0.2 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family PK_C PF02887.16 gi|352683062|ref|YP_004893586.1| - 1.2e-05 25.5 0.1 0.0001 22.5 0.0 2.4 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain Sen15 PF09631.10 gi|352683064|ref|YP_004893588.1| - 0.024 14.9 0.1 0.11 12.8 0.1 1.9 1 1 1 2 2 2 0 Sen15 protein Ribosomal_L2_C PF03947.18 gi|352683065|ref|YP_004893589.1| - 7.9e-42 142.4 2.3 1.1e-41 141.9 2.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|352683065|ref|YP_004893589.1| - 1.4e-09 37.8 0.0 4.2e-09 36.3 0.0 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain TF_Zn_Ribbon PF08271.12 gi|352683066|ref|YP_004893590.1| - 0.00018 20.9 0.7 0.0003 20.2 0.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|352683066|ref|YP_004893590.1| - 0.0046 16.9 2.8 0.0046 16.9 1.4 1.8 2 0 0 2 2 2 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|352683066|ref|YP_004893590.1| - 0.0087 16.0 1.3 0.0087 16.0 1.3 1.6 2 0 0 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|352683066|ref|YP_004893590.1| - 0.017 15.2 0.5 0.022 14.8 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-RRN7 PF11781.8 gi|352683066|ref|YP_004893590.1| - 0.02 14.5 0.1 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Lar_restr_allev PF14354.6 gi|352683066|ref|YP_004893590.1| - 0.021 15.2 1.2 0.021 15.2 1.2 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_L37ae PF01780.19 gi|352683066|ref|YP_004893590.1| - 0.033 14.3 0.8 0.033 14.3 0.8 1.8 2 1 0 2 2 2 0 Ribosomal L37ae protein family DNA_ligase_ZBD PF03119.16 gi|352683066|ref|YP_004893590.1| - 0.052 13.6 1.6 0.11 12.5 1.6 1.6 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|352683066|ref|YP_004893590.1| - 0.08 13.1 3.3 0.79 9.9 0.3 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|352683066|ref|YP_004893590.1| - 0.096 12.7 1.2 0.2 11.6 0.4 1.8 2 0 0 2 2 2 0 zinc-ribbons TackOD1 PF18551.1 gi|352683066|ref|YP_004893590.1| - 0.1 12.2 1.1 0.49 10.0 1.1 1.9 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Rep_fac-A_C PF08646.10 gi|352683066|ref|YP_004893590.1| - 0.13 12.0 0.7 0.19 11.5 0.7 1.5 1 1 0 1 1 1 0 Replication factor-A C terminal domain Anti-TRAP PF15777.5 gi|352683066|ref|YP_004893590.1| - 0.14 12.1 1.2 0.31 11.0 1.2 1.7 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein RNA_POL_M_15KD PF02150.16 gi|352683066|ref|YP_004893590.1| - 0.19 11.6 2.8 0.43 10.5 0.8 2.4 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit A2L_zn_ribbon PF08792.10 gi|352683066|ref|YP_004893590.1| - 0.21 11.4 1.8 11 5.9 2.0 2.3 1 1 0 1 1 1 0 A2L zinc ribbon domain VIT1 PF01988.19 gi|352683066|ref|YP_004893590.1| - 0.22 11.3 0.2 0.26 11.1 0.2 1.1 1 0 0 1 1 1 0 VIT family Ogr_Delta PF04606.12 gi|352683066|ref|YP_004893590.1| - 0.26 11.3 2.4 0.97 9.5 2.4 2.0 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger HypA PF01155.19 gi|352683066|ref|YP_004893590.1| - 0.5 10.4 2.8 5.6 7.0 0.2 2.6 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_C2H2_10 PF18414.1 gi|352683066|ref|YP_004893590.1| - 0.56 9.8 3.1 0.86 9.2 0.5 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger TFIIS_C PF01096.18 gi|352683066|ref|YP_004893590.1| - 0.57 10.1 7.2 1.6e+02 2.2 7.2 2.4 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) PADR1 PF08063.12 gi|352683066|ref|YP_004893590.1| - 1.1 9.1 5.6 0.26 11.1 2.4 1.6 2 0 0 2 2 2 0 PADR1 (NUC008) domain zf-ribbon_3 PF13248.6 gi|352683066|ref|YP_004893590.1| - 2.4 7.7 6.6 22 4.6 6.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|352683066|ref|YP_004893590.1| - 5.7 6.9 7.9 45 4.1 3.8 3.2 2 2 0 2 2 2 0 zinc-ribbon domain FMN_dh PF01070.18 gi|352683067|ref|YP_004893591.1| - 9.1e-26 90.7 0.1 1.5e-16 60.4 0.0 2.1 1 1 0 2 2 2 2 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|352683067|ref|YP_004893591.1| - 1.8e-06 27.3 0.8 0.0074 15.5 1.1 2.8 2 1 0 2 2 2 2 Conserved region in glutamate synthase IMPDH PF00478.25 gi|352683067|ref|YP_004893591.1| - 7.9e-06 25.1 2.4 0.012 14.6 1.5 3.1 3 1 0 3 3 3 2 IMP dehydrogenase / GMP reductase domain DHO_dh PF01180.21 gi|352683067|ref|YP_004893591.1| - 0.037 13.3 0.0 0.083 12.1 0.0 1.5 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|352683067|ref|YP_004893591.1| - 0.06 12.7 0.5 4.3 6.6 0.0 2.4 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Memo PF01875.17 gi|352683068|ref|YP_004893592.1| - 8.1e-76 254.7 0.0 9.2e-76 254.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|352683068|ref|YP_004893592.1| - 5.4e-06 25.7 0.0 2.4e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ribosomal_S2 PF00318.20 gi|352683069|ref|YP_004893593.1| - 7.6e-25 87.4 0.0 4.7e-16 58.7 0.1 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 ParA PF10609.9 gi|352683072|ref|YP_004893596.1| - 2.3e-84 282.7 0.1 2.7e-84 282.5 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|352683072|ref|YP_004893596.1| - 2.2e-09 37.4 0.0 2.9e-08 33.8 0.0 2.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|352683072|ref|YP_004893596.1| - 3e-05 23.4 1.4 0.00012 21.3 0.7 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|352683072|ref|YP_004893596.1| - 0.0022 17.8 0.7 0.52 10.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|352683072|ref|YP_004893596.1| - 0.0029 17.1 0.3 0.18 11.2 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|352683072|ref|YP_004893596.1| - 0.0032 17.4 0.1 0.013 15.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|352683072|ref|YP_004893596.1| - 0.036 13.3 0.0 0.055 12.7 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ APS_kinase PF01583.20 gi|352683072|ref|YP_004893596.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 gi|352683072|ref|YP_004893596.1| - 0.12 11.9 0.0 0.38 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|352683072|ref|YP_004893596.1| - 0.13 11.3 0.2 0.25 10.3 0.2 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|352683072|ref|YP_004893596.1| - 0.24 10.5 0.2 0.38 9.9 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain OrfB_Zn_ribbon PF07282.11 gi|352683074|ref|YP_004893598.1| - 9.1e-13 47.9 0.0 1e-12 47.8 0.0 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NRDD PF13597.6 gi|352683074|ref|YP_004893598.1| - 0.014 14.2 0.0 0.016 14.0 0.0 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF1610 PF07754.11 gi|352683074|ref|YP_004893598.1| - 0.036 14.0 4.8 3 7.9 0.6 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TF_Zn_Ribbon PF08271.12 gi|352683074|ref|YP_004893598.1| - 0.047 13.2 1.3 0.85 9.2 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|352683074|ref|YP_004893598.1| - 0.086 12.3 2.4 2.5 7.6 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|352683074|ref|YP_004893598.1| - 0.1 12.9 4.7 0.46 10.8 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon SpoU_sub_bind PF08032.12 gi|352683074|ref|YP_004893598.1| - 0.19 12.0 0.0 0.23 11.8 0.0 1.1 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding GATA PF00320.27 gi|352683074|ref|YP_004893598.1| - 0.2 11.3 3.1 1.9 8.1 0.1 2.2 2 0 0 2 2 2 0 GATA zinc finger zf_UBZ PF18439.1 gi|352683074|ref|YP_004893598.1| - 0.32 10.6 1.6 14 5.4 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-FPG_IleRS PF06827.14 gi|352683074|ref|YP_004893598.1| - 0.7 9.8 9.6 3.1 7.7 0.7 3.1 2 1 1 3 3 3 0 Zinc finger found in FPG and IleRS zf-CCHC_5 PF14787.6 gi|352683074|ref|YP_004893598.1| - 0.81 9.4 7.3 7.4 6.4 0.3 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zinc_ribbon_2 PF13240.6 gi|352683074|ref|YP_004893598.1| - 1.2 8.9 5.4 9.5 6.1 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|352683074|ref|YP_004893598.1| - 1.2 9.3 5.1 6.7 6.9 0.4 2.2 1 1 1 2 2 2 0 Zinc ribbon domain SHMT PF00464.19 gi|352683075|ref|YP_004893599.1| - 1.7e-71 240.9 0.0 2.1e-71 240.6 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|352683075|ref|YP_004893599.1| - 4.1e-06 26.3 0.0 5.9e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|352683075|ref|YP_004893599.1| - 3.8e-05 23.2 0.0 8.5e-05 22.0 0.0 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|352683075|ref|YP_004893599.1| - 0.00023 20.4 0.0 0.00058 19.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|352683075|ref|YP_004893599.1| - 0.039 12.9 0.0 0.06 12.3 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class-V SelA PF03841.13 gi|352683075|ref|YP_004893599.1| - 0.18 10.8 0.1 0.64 8.9 0.0 1.8 1 1 1 2 2 2 0 L-seryl-tRNA selenium transferase adh_short_C2 PF13561.6 gi|352683076|ref|YP_004893600.1| - 6.6e-55 186.2 0.0 8.7e-55 185.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|352683076|ref|YP_004893600.1| - 1.2e-42 145.6 0.0 1.4e-42 145.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|352683076|ref|YP_004893600.1| - 8.9e-09 35.5 0.0 1.5e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|352683076|ref|YP_004893600.1| - 0.0036 17.5 0.0 0.0075 16.5 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|352683076|ref|YP_004893600.1| - 0.018 15.6 0.3 0.035 14.7 0.3 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|352683076|ref|YP_004893600.1| - 0.057 13.3 0.2 0.086 12.7 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Dopey_N PF04118.14 gi|352683077|ref|YP_004893601.1| - 0.042 13.0 0.4 0.06 12.4 0.4 1.2 1 0 0 1 1 1 0 Dopey, N-terminal PhoU PF01895.19 gi|352683077|ref|YP_004893601.1| - 2.4 8.7 8.4 4.3 7.9 0.1 3.6 2 2 2 4 4 4 0 PhoU domain dCMP_cyt_deam_1 PF00383.23 gi|352683078|ref|YP_004893602.1| - 1.1e-17 63.7 0.1 1.3e-17 63.5 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|352683078|ref|YP_004893602.1| - 1.7e-12 47.7 1.1 1.9e-12 47.5 0.2 1.6 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|352683078|ref|YP_004893602.1| - 0.0036 16.9 0.4 0.31 10.6 0.1 2.0 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases MoaC PF01967.21 gi|352683079|ref|YP_004893603.1| - 2.6e-07 30.8 0.0 3.1e-07 30.5 0.0 1.0 1 0 0 1 1 1 1 MoaC family MoaC PF01967.21 gi|352683080|ref|YP_004893604.1| - 5.5e-11 42.7 0.1 3e-08 33.8 0.0 2.9 2 2 1 3 3 3 2 MoaC family HTH_1 PF00126.27 gi|352683081|ref|YP_004893605.1| - 6e-14 51.7 0.0 8.3e-14 51.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.6 gi|352683081|ref|YP_004893605.1| - 0.00058 19.8 0.4 0.00098 19.1 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2089 PF09862.9 gi|352683081|ref|YP_004893605.1| - 0.013 15.5 0.1 1 9.4 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) HTH_29 PF13551.6 gi|352683081|ref|YP_004893605.1| - 0.033 14.2 0.0 0.062 13.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix HTH_8 PF02954.19 gi|352683081|ref|YP_004893605.1| - 0.091 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family FerA PF08165.11 gi|352683081|ref|YP_004893605.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 FerA (NUC095) domain Radical_SAM PF04055.21 gi|352683082|ref|YP_004893606.1| - 2.7e-27 96.2 0.0 4.5e-27 95.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|352683082|ref|YP_004893606.1| - 6.5e-23 81.1 0.0 9.4e-23 80.5 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|352683082|ref|YP_004893606.1| - 4.5e-06 27.0 0.0 8.3e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|352683082|ref|YP_004893606.1| - 0.0002 21.5 0.0 0.00041 20.5 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Pkinase PF00069.25 gi|352683083|ref|YP_004893607.1| - 9.6e-42 143.2 0.0 2.1e-41 142.1 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|352683083|ref|YP_004893607.1| - 8e-26 90.9 0.0 1.1e-25 90.4 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.26 gi|352683084|ref|YP_004893608.1| - 1.3e-13 51.0 0.4 1.3e-12 47.8 0.1 2.1 1 1 1 2 2 2 1 FHA domain Yop-YscD_cpl PF16697.5 gi|352683084|ref|YP_004893608.1| - 2.4e-11 43.8 0.1 3.7e-11 43.2 0.1 1.3 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain zf-RanBP PF00641.18 gi|352683084|ref|YP_004893608.1| - 1.2e-06 27.7 1.2 1.7e-06 27.2 1.2 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|352683084|ref|YP_004893608.1| - 0.0018 17.9 3.5 0.0032 17.1 3.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|352683084|ref|YP_004893608.1| - 0.0041 17.1 0.8 0.0064 16.5 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|352683084|ref|YP_004893608.1| - 0.016 14.6 3.3 0.029 13.8 3.3 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Vps36-NZF-N PF16988.5 gi|352683084|ref|YP_004893608.1| - 0.049 13.0 2.1 0.34 10.3 2.1 2.0 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-tcix PF14952.6 gi|352683084|ref|YP_004893608.1| - 0.14 11.8 6.6 1 9.0 5.2 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-Sec23_Sec24 PF04810.15 gi|352683084|ref|YP_004893608.1| - 0.42 10.7 2.6 1.2 9.2 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Peptidase_M24 PF00557.24 gi|352683085|ref|YP_004893609.1| - 8.8e-41 139.9 0.0 1e-40 139.7 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 Toprim_4 PF13662.6 gi|352683086|ref|YP_004893610.1| - 7.4e-08 32.8 0.3 1.9e-07 31.4 0.3 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|352683086|ref|YP_004893610.1| - 0.00053 20.3 0.0 0.0017 18.7 0.0 1.9 1 0 0 1 1 1 1 Toprim-like DUF5364 PF17322.2 gi|352683086|ref|YP_004893610.1| - 0.031 14.6 2.8 1.1 9.6 0.4 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5364) Toprim PF01751.22 gi|352683086|ref|YP_004893610.1| - 0.04 14.2 0.6 0.23 11.7 0.1 2.4 2 0 0 2 2 2 0 Toprim domain PBSX_XtrA PF17356.2 gi|352683086|ref|YP_004893610.1| - 0.056 13.3 1.4 0.17 11.8 0.2 2.3 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA Ribosomal_60s PF00428.19 gi|352683086|ref|YP_004893610.1| - 0.092 13.3 2.3 0.25 12.0 2.3 1.7 1 0 0 1 1 1 0 60s Acidic ribosomal protein Rad50_zn_hook PF04423.14 gi|352683086|ref|YP_004893610.1| - 0.49 10.3 3.2 1.9 8.4 3.2 2.0 1 0 0 1 1 1 0 Rad50 zinc hook motif DNA_pol_B PF00136.21 gi|352683087|ref|YP_004893611.1| - 5.5e-71 239.6 0.0 7.3e-71 239.2 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|352683087|ref|YP_004893611.1| - 1.1e-37 130.0 0.0 3.1e-35 121.9 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|352683087|ref|YP_004893611.1| - 4.9e-05 23.4 0.0 9.9e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|352683087|ref|YP_004893611.1| - 7.2e-05 22.6 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB HHH_4 PF14490.6 gi|352683087|ref|YP_004893611.1| - 0.083 12.9 0.0 1.1 9.3 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix containing domain Ribosomal_L37e PF01907.19 gi|352683088|ref|YP_004893612.1| - 2.4e-23 82.0 11.5 2.6e-23 81.9 11.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|352683088|ref|YP_004893612.1| - 0.0071 16.3 0.9 0.0093 16.0 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF2752 PF10825.8 gi|352683088|ref|YP_004893612.1| - 0.033 14.2 1.2 7.3 6.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) GcpE PF04551.14 gi|352683088|ref|YP_004893612.1| - 0.098 11.7 0.7 0.11 11.6 0.7 1.1 1 0 0 1 1 1 0 GcpE protein zf-ribbon_3 PF13248.6 gi|352683088|ref|YP_004893612.1| - 0.12 11.8 4.9 0.33 10.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain MraY_sig1 PF10555.9 gi|352683088|ref|YP_004893612.1| - 0.23 11.0 1.3 0.32 10.6 1.3 1.2 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HypA PF01155.19 gi|352683088|ref|YP_004893612.1| - 0.29 11.2 1.5 0.51 10.4 0.4 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|352683088|ref|YP_004893612.1| - 1.1 9.3 5.4 10 6.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_2 PF13240.6 gi|352683088|ref|YP_004893612.1| - 1.2 8.9 6.6 22 4.9 6.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain LSM PF01423.22 gi|352683089|ref|YP_004893613.1| - 3.4e-22 77.9 0.3 3.8e-22 77.8 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|352683089|ref|YP_004893613.1| - 2.1e-05 24.6 0.0 2.4e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|352683089|ref|YP_004893613.1| - 0.0013 18.3 0.1 0.0017 18.0 0.1 1.2 1 0 0 1 1 1 1 Hfq protein Beta-Casp PF10996.8 gi|352683091|ref|YP_004893615.1| - 3.5e-23 82.0 0.0 7.2e-23 81.0 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|352683091|ref|YP_004893615.1| - 3.5e-19 69.0 0.1 7.2e-19 68.0 0.1 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|352683091|ref|YP_004893615.1| - 8.8e-16 57.6 0.0 3.1e-15 55.8 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain KH_7 PF17214.3 gi|352683091|ref|YP_004893615.1| - 1.2e-13 50.8 0.2 4.5e-13 49.0 0.2 2.0 1 0 0 1 1 1 1 KH domain Lactamase_B PF00753.27 gi|352683091|ref|YP_004893615.1| - 4.9e-13 49.5 0.2 1.5e-12 47.9 0.2 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|352683091|ref|YP_004893615.1| - 1e-09 38.2 0.0 5.2e-09 35.9 0.0 2.2 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|352683091|ref|YP_004893615.1| - 0.0059 16.5 0.1 0.085 12.7 0.0 2.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Proteasome PF00227.26 gi|352683092|ref|YP_004893616.1| - 8.5e-54 181.9 0.1 9.7e-54 181.7 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit FKBP26_C PF18046.1 gi|352683093|ref|YP_004893617.1| - 1.5e-09 37.8 0.2 5.1e-09 36.1 0.0 2.0 2 0 0 2 2 2 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|352683093|ref|YP_004893617.1| - 8.1e-08 32.5 0.1 2.1e-07 31.2 0.0 1.7 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Ribosomal_S17e PF00833.18 gi|352683094|ref|YP_004893618.1| - 3.7e-17 62.4 0.3 4.1e-17 62.2 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S17 SDH_sah PF01972.16 gi|352683094|ref|YP_004893618.1| - 0.0047 16.0 0.1 0.0051 15.9 0.1 1.0 1 0 0 1 1 1 1 Serine dehydrogenase proteinase DUF3243 PF11588.8 gi|352683094|ref|YP_004893618.1| - 0.025 14.9 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3243) Cpn60_TCP1 PF00118.24 gi|352683095|ref|YP_004893619.1| - 1.1e-176 588.3 8.0 1.3e-176 588.1 8.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|352683095|ref|YP_004893619.1| - 2.2e-05 24.4 1.1 0.016 15.1 0.6 2.4 2 0 0 2 2 2 2 DAK2 domain Hydrolase PF00702.26 gi|352683095|ref|YP_004893619.1| - 1.6 9.0 7.7 2.2 8.5 5.1 2.3 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase HTH_OrfB_IS605 PF12323.8 gi|352683096|ref|YP_004893620.1| - 0.64 9.5 2.0 21 4.7 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain T2SSE PF00437.20 gi|352683097|ref|YP_004893621.1| - 8.9e-21 74.1 0.0 1.1e-20 73.8 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|352683097|ref|YP_004893621.1| - 6.7e-05 23.2 0.0 0.00051 20.3 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|352683097|ref|YP_004893621.1| - 0.00038 21.0 0.1 0.0037 17.8 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|352683097|ref|YP_004893621.1| - 0.00051 20.5 0.0 0.00087 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|352683097|ref|YP_004893621.1| - 0.0012 18.6 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_30 PF13604.6 gi|352683097|ref|YP_004893621.1| - 0.0019 17.9 0.0 0.0045 16.7 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.6 gi|352683097|ref|YP_004893621.1| - 0.0022 17.7 0.0 0.0054 16.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|352683097|ref|YP_004893621.1| - 0.0032 18.0 0.0 0.0052 17.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter cobW PF02492.19 gi|352683097|ref|YP_004893621.1| - 0.0033 17.0 0.0 0.0076 15.8 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|352683097|ref|YP_004893621.1| - 0.0036 17.7 0.0 0.0088 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|352683097|ref|YP_004893621.1| - 0.0038 17.2 0.0 0.0073 16.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain G-alpha PF00503.20 gi|352683097|ref|YP_004893621.1| - 0.0042 16.3 0.5 0.0074 15.5 0.5 1.3 1 0 0 1 1 1 1 G-protein alpha subunit NTPase_1 PF03266.15 gi|352683097|ref|YP_004893621.1| - 0.0053 16.7 0.0 0.018 15.0 0.0 1.9 2 0 0 2 2 2 1 NTPase AAA_14 PF13173.6 gi|352683097|ref|YP_004893621.1| - 0.0056 16.7 0.8 0.014 15.4 0.1 2.2 2 2 0 2 2 2 1 AAA domain AAA PF00004.29 gi|352683097|ref|YP_004893621.1| - 0.0062 17.0 3.0 0.098 13.1 3.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|352683097|ref|YP_004893621.1| - 0.013 14.9 0.0 0.022 14.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|352683097|ref|YP_004893621.1| - 0.017 15.1 0.0 0.032 14.1 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|352683097|ref|YP_004893621.1| - 0.017 14.6 0.0 0.046 13.2 0.0 1.7 1 1 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|352683097|ref|YP_004893621.1| - 0.021 15.3 3.1 0.024 15.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|352683097|ref|YP_004893621.1| - 0.021 15.2 0.0 0.055 13.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|352683097|ref|YP_004893621.1| - 0.022 14.1 0.0 0.041 13.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|352683097|ref|YP_004893621.1| - 0.025 14.3 1.2 0.11 12.2 1.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|352683097|ref|YP_004893621.1| - 0.026 14.7 0.0 0.043 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|352683097|ref|YP_004893621.1| - 0.03 14.6 0.0 0.048 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|352683097|ref|YP_004893621.1| - 0.03 13.7 0.0 0.056 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Viral_helicase1 PF01443.18 gi|352683097|ref|YP_004893621.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|352683097|ref|YP_004893621.1| - 0.11 11.7 0.0 0.25 10.5 0.0 1.6 2 0 0 2 2 1 0 NB-ARC domain AAA_11 PF13086.6 gi|352683097|ref|YP_004893621.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|352683097|ref|YP_004893621.1| - 0.14 12.2 0.0 0.33 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|352683097|ref|YP_004893621.1| - 0.19 11.3 0.0 0.35 10.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|352683097|ref|YP_004893621.1| - 0.21 10.5 0.0 0.33 9.9 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ResIII PF04851.15 gi|352683097|ref|YP_004893621.1| - 0.53 10.3 3.4 0.66 10.0 1.3 2.3 2 1 0 2 2 1 0 Type III restriction enzyme, res subunit TFIIB PF00382.19 gi|352683098|ref|YP_004893622.1| - 8e-09 35.4 0.1 5.7e-08 32.7 0.0 2.0 1 1 1 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|352683098|ref|YP_004893622.1| - 8.1e-07 28.5 0.5 1.5e-06 27.6 0.5 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|352683098|ref|YP_004893622.1| - 0.00021 20.9 2.7 0.00049 19.7 2.7 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|352683098|ref|YP_004893622.1| - 0.00092 18.5 0.6 0.0018 17.6 0.6 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-RRN7 PF11781.8 gi|352683098|ref|YP_004893622.1| - 0.0015 18.2 1.0 0.0024 17.5 1.0 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HTH_Crp_2 PF13545.6 gi|352683098|ref|YP_004893622.1| - 0.008 16.1 0.1 0.016 15.2 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DZR PF12773.7 gi|352683098|ref|YP_004893622.1| - 0.11 12.5 0.1 0.22 11.6 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon HTH_23 PF13384.6 gi|352683098|ref|YP_004893622.1| - 0.12 12.2 0.0 0.31 10.9 0.0 1.8 1 1 0 1 1 1 0 Homeodomain-like domain zinc_ribbon_2 PF13240.6 gi|352683098|ref|YP_004893622.1| - 0.18 11.6 1.3 16 5.4 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRPl_C4 PF17026.5 gi|352683098|ref|YP_004893622.1| - 0.18 11.9 3.6 0.15 12.1 1.4 2.1 2 1 0 2 2 2 0 Putative ribonucleoprotein zinc-finger pf C4 type RNA_pol_Rpb8 PF03870.15 gi|352683099|ref|YP_004893623.1| - 0.0021 18.3 0.0 0.0025 18.0 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb8 DUF3912 PF13051.6 gi|352683099|ref|YP_004893623.1| - 0.079 13.2 0.2 0.78 10.1 0.2 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3912) Lsm_C PF14894.6 gi|352683101|ref|YP_004893625.1| - 4.4e-25 87.2 1.1 6.6e-25 86.7 1.1 1.3 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|352683101|ref|YP_004893625.1| - 2.4e-09 36.8 0.4 3.6e-09 36.2 0.4 1.5 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|352683101|ref|YP_004893625.1| - 9.3e-08 32.1 0.1 2.4e-07 30.8 0.1 1.6 1 1 0 1 1 1 1 Ataxin 2 SM domain TGT PF01702.18 gi|352683102|ref|YP_004893626.1| - 2.2e-63 214.5 0.0 3e-63 214.1 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|352683102|ref|YP_004893626.1| - 1.6e-09 37.8 0.1 3.6e-09 36.6 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|352683103|ref|YP_004893627.1| - 1.8e-34 119.6 0.0 2.1e-34 119.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TFIIE_alpha PF02002.17 gi|352683104|ref|YP_004893628.1| - 2.2e-06 27.4 0.3 2.2e-06 27.4 0.3 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|352683104|ref|YP_004893628.1| - 0.0052 16.3 0.8 0.74 9.4 0.1 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding DUF722 PF05263.11 gi|352683104|ref|YP_004893628.1| - 0.0088 16.3 0.0 0.023 14.9 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF722) HypA PF01155.19 gi|352683104|ref|YP_004893628.1| - 0.025 14.6 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|352683104|ref|YP_004893628.1| - 0.048 13.6 3.0 0.21 11.5 3.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|352683104|ref|YP_004893628.1| - 0.096 12.7 0.2 1 9.4 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon PADR1 PF08063.12 gi|352683104|ref|YP_004893628.1| - 0.17 11.7 1.7 11 5.9 0.1 2.3 1 1 1 2 2 2 0 PADR1 (NUC008) domain Sgf11 PF08209.11 gi|352683104|ref|YP_004893628.1| - 0.98 9.0 4.0 0.9 9.2 0.6 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_4 PF14570.6 gi|352683104|ref|YP_004893628.1| - 4.6 7.1 6.8 8.4 6.3 1.5 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain GTP-bdg_N PF13167.6 gi|352683105|ref|YP_004893629.1| - 4.8e-17 62.4 0.0 1e-16 61.4 0.0 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|352683105|ref|YP_004893629.1| - 4.6e-16 58.9 0.0 7.8e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|352683105|ref|YP_004893629.1| - 6.3e-15 55.5 1.5 1.2e-14 54.7 1.5 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region FeoB_N PF02421.18 gi|352683105|ref|YP_004893629.1| - 1.7e-07 30.9 0.0 5.1e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|352683105|ref|YP_004893629.1| - 3.6e-05 23.4 0.3 0.0082 15.7 0.1 2.7 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|352683105|ref|YP_004893629.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.5 1 1 0 1 1 1 0 Ras family Roc PF08477.13 gi|352683105|ref|YP_004893629.1| - 0.026 14.7 0.0 0.064 13.5 0.0 1.7 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|352683105|ref|YP_004893629.1| - 0.027 13.9 0.0 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_28 PF13521.6 gi|352683105|ref|YP_004893629.1| - 0.028 14.7 0.0 0.058 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|352683105|ref|YP_004893629.1| - 0.048 13.6 2.4 1.1 9.1 0.1 2.6 2 1 1 3 3 3 0 NTPase PduV-EutP PF10662.9 gi|352683105|ref|YP_004893629.1| - 0.051 13.3 0.0 4.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|352683105|ref|YP_004893629.1| - 0.054 13.4 0.0 0.42 10.5 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|352683105|ref|YP_004893629.1| - 0.075 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_14 PF13173.6 gi|352683105|ref|YP_004893629.1| - 0.15 12.1 0.1 0.39 10.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|352683106|ref|YP_004893630.1| - 1.6e-14 53.7 1.9 4e-14 52.4 1.4 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|352683106|ref|YP_004893630.1| - 4.4e-09 36.6 1.3 1.7e-08 34.7 0.1 2.5 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|352683106|ref|YP_004893630.1| - 1.8e-07 31.1 0.2 3.2e-07 30.3 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|352683106|ref|YP_004893630.1| - 6.3e-06 26.0 0.5 1.5e-05 24.7 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|352683106|ref|YP_004893630.1| - 0.00044 20.5 1.3 0.00072 19.8 1.3 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain MqsA_antitoxin PF15731.5 gi|352683106|ref|YP_004893630.1| - 0.06 13.5 0.8 0.14 12.2 0.8 1.8 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA ADK_lid PF05191.14 gi|352683106|ref|YP_004893630.1| - 0.1 12.6 0.6 5.6 7.0 0.1 2.3 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_37 PF13744.6 gi|352683106|ref|YP_004893630.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PUA PF01472.20 gi|352683107|ref|YP_004893631.1| - 2.1e-13 50.0 0.0 3e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 PUA domain TGT_C2 PF14810.6 gi|352683107|ref|YP_004893631.1| - 8e-08 32.3 0.0 1.2e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase UPF0113 PF03657.13 gi|352683107|ref|YP_004893631.1| - 3.5e-05 24.0 0.0 6.8e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain FAINT PF04385.15 gi|352683107|ref|YP_004893631.1| - 0.0018 18.3 0.6 0.0028 17.7 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function, DUF529 DUF1947 PF09183.10 gi|352683107|ref|YP_004893631.1| - 0.011 16.0 0.1 0.018 15.3 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1947) MerC PF03203.14 gi|352683109|ref|YP_004893633.1| - 0.042 14.3 4.7 0.06 13.8 4.7 1.3 1 0 0 1 1 1 0 MerC mercury resistance protein CstA PF02554.14 gi|352683109|ref|YP_004893633.1| - 0.052 12.4 2.7 0.068 12.1 2.7 1.2 1 0 0 1 1 1 0 Carbon starvation protein CstA Lon_C PF05362.13 gi|352683110|ref|YP_004893634.1| - 3.8e-13 49.5 3.8 6.4e-13 48.7 3.8 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|352683110|ref|YP_004893634.1| - 0.01 15.7 0.0 0.021 14.7 0.0 1.5 1 0 0 1 1 1 0 Subunit ChlI of Mg-chelatase MGAT2 PF05060.14 gi|352683110|ref|YP_004893634.1| - 0.25 10.4 0.3 0.38 9.8 0.3 1.2 1 0 0 1 1 1 0 N-acetylglucosaminyltransferase II (MGAT2) SIR2 PF02146.17 gi|352683111|ref|YP_004893635.1| - 3.8e-57 193.1 0.0 4.5e-57 192.8 0.0 1.1 1 0 0 1 1 1 1 Sir2 family Zn-ribbon_8 PF09723.10 gi|352683111|ref|YP_004893635.1| - 0.023 14.8 0.1 0.041 14.0 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|352683111|ref|YP_004893635.1| - 0.069 12.6 1.9 0.14 11.6 1.9 1.5 1 0 0 1 1 1 0 Mu-like prophage protein Com HypA PF01155.19 gi|352683111|ref|YP_004893635.1| - 0.072 13.1 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SIS PF01380.22 gi|352683111|ref|YP_004893635.1| - 0.095 12.5 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 SIS domain DUF1451 PF07295.11 gi|352683111|ref|YP_004893635.1| - 0.13 12.3 0.2 0.2 11.7 0.2 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn_ribbon_recom PF13408.6 gi|352683111|ref|YP_004893635.1| - 0.8 10.3 2.7 7.1 7.2 0.2 2.3 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-FPG_IleRS PF06827.14 gi|352683111|ref|YP_004893635.1| - 2.2 8.2 5.4 8.7 6.3 0.5 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF123 PF01986.16 gi|352683112|ref|YP_004893636.1| - 2e-13 50.7 0.0 2.7e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 Lactamase_B PF00753.27 gi|352683113|ref|YP_004893637.1| - 0.013 15.5 5.1 0.046 13.7 5.1 2.1 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|352683113|ref|YP_004893637.1| - 0.028 13.9 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain PP2C PF00481.21 gi|352683113|ref|YP_004893637.1| - 0.2 11.3 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein phosphatase 2C tRNA-synt_His PF13393.6 gi|352683114|ref|YP_004893638.1| - 0.015 14.6 0.1 0.016 14.5 0.1 1.1 1 0 0 1 1 1 0 Histidyl-tRNA synthetase Trigger_C PF05698.14 gi|352683114|ref|YP_004893638.1| - 0.02 14.9 0.3 0.15 12.1 0.2 2.1 2 0 0 2 2 2 0 Bacterial trigger factor protein (TF) C-terminus MinC_C PF03775.16 gi|352683114|ref|YP_004893638.1| - 0.12 12.3 0.5 0.21 11.6 0.5 1.3 1 0 0 1 1 1 0 Septum formation inhibitor MinC, C-terminal domain Pro-kuma_activ PF09286.11 gi|352683115|ref|YP_004893639.1| - 2.9e-07 30.9 0.0 4.7e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|352683115|ref|YP_004893639.1| - 0.00018 20.8 0.0 0.00057 19.2 0.0 1.7 2 1 0 2 2 2 1 Subtilase family Vut_1 PF02592.15 gi|352683116|ref|YP_004893640.1| - 2.2e-27 96.2 7.5 2.2e-27 96.2 7.5 1.9 2 0 0 2 2 2 1 Putative vitamin uptake transporter VitK2_biosynth PF02621.14 gi|352683117|ref|YP_004893641.1| - 5.6e-75 252.3 0.0 6.3e-75 252.1 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis VitK2_biosynth PF02621.14 gi|352683118|ref|YP_004893642.1| - 9.1e-23 81.1 0.0 1.2e-22 80.7 0.0 1.2 1 0 0 1 1 1 1 Menaquinone biosynthesis GST_C PF00043.25 gi|352683118|ref|YP_004893642.1| - 0.16 12.2 0.0 0.53 10.5 0.0 1.8 2 1 0 2 2 2 0 Glutathione S-transferase, C-terminal domain Radical_SAM PF04055.21 gi|352683119|ref|YP_004893643.1| - 3.4e-14 53.6 0.0 6.3e-13 49.4 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily PASTA PF03793.19 gi|352683119|ref|YP_004893643.1| - 0.018 14.9 0.0 10 6.1 0.0 2.7 2 0 0 2 2 2 0 PASTA domain Glyco_hydro_35 PF01301.19 gi|352683119|ref|YP_004893643.1| - 0.21 11.2 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 35 Radical_SAM PF04055.21 gi|352683120|ref|YP_004893644.1| - 1.8e-19 70.7 0.0 3.3e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Amidohydro_1 PF01979.20 gi|352683121|ref|YP_004893645.1| - 2.7e-15 56.5 0.0 2e-14 53.6 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|352683121|ref|YP_004893645.1| - 7.8e-08 32.2 0.1 0.00038 20.1 0.0 2.7 2 1 1 3 3 3 2 Amidohydrolase family DUF86 PF01934.17 gi|352683122|ref|YP_004893646.1| - 1.9e-05 24.5 0.0 2.1e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF86 PF01934.17 gi|352683123|ref|YP_004893647.1| - 0.0093 15.8 0.0 0.011 15.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|352683124|ref|YP_004893648.1| - 9.3e-07 28.9 0.0 1.1e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|352683124|ref|YP_004893648.1| - 0.002 18.4 0.0 0.0023 18.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain MFS_1 PF07690.16 gi|352683125|ref|YP_004893649.1| - 5.9e-23 81.4 56.2 2.2e-13 49.9 21.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily VWA_CoxE PF05762.14 gi|352683126|ref|YP_004893650.1| - 8.5e-05 22.0 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|352683126|ref|YP_004893650.1| - 0.00067 20.3 0.0 0.025 15.2 0.0 2.8 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.28 gi|352683126|ref|YP_004893650.1| - 0.11 12.7 0.0 2.4 8.4 0.0 2.1 2 0 0 2 2 2 0 von Willebrand factor type A domain V_ATPase_I PF01496.19 gi|352683127|ref|YP_004893651.1| - 4.4e-19 67.9 0.3 2.9e-13 48.7 0.0 3.0 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family GATase_6 PF13522.6 gi|352683128|ref|YP_004893652.1| - 1.8e-08 34.7 0.0 5.3e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|352683128|ref|YP_004893652.1| - 5.9e-06 26.2 0.0 1.5e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|352683128|ref|YP_004893652.1| - 0.0021 17.6 0.1 0.0047 16.5 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyltran PF00156.27 gi|352683129|ref|YP_004893653.1| - 5.3e-12 45.5 0.3 8.8e-12 44.8 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|352683129|ref|YP_004893653.1| - 0.18 11.3 0.1 0.38 10.2 0.1 1.5 1 1 0 1 1 1 0 Phosphoribosyl transferase GATase_5 PF13507.6 gi|352683130|ref|YP_004893654.1| - 5.4e-35 120.7 0.0 1.7e-33 115.8 0.0 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|352683130|ref|YP_004893654.1| - 2.8e-08 33.7 0.0 6.2e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|352683130|ref|YP_004893654.1| - 3.2e-08 33.4 0.0 4.5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|352683130|ref|YP_004893654.1| - 1.1e-07 31.8 0.0 1.2e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|352683130|ref|YP_004893654.1| - 0.0024 17.7 0.0 0.0038 17.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 PurS PF02700.14 gi|352683131|ref|YP_004893655.1| - 6.5e-15 55.1 0.0 8.1e-15 54.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GARS_A PF01071.19 gi|352683132|ref|YP_004893656.1| - 8.3e-39 133.4 0.0 1.1e-38 132.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|352683132|ref|YP_004893656.1| - 6e-19 68.6 0.0 1.2e-18 67.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|352683132|ref|YP_004893656.1| - 3.1e-11 43.4 1.9 3.4e-10 40.1 0.3 2.9 3 0 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|352683132|ref|YP_004893656.1| - 0.0016 18.5 0.0 0.0033 17.5 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|352683132|ref|YP_004893656.1| - 0.0018 17.9 0.0 0.0045 16.6 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|352683132|ref|YP_004893656.1| - 0.0038 16.5 0.0 0.0091 15.3 0.0 1.5 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|352683132|ref|YP_004893656.1| - 0.017 14.6 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain SAICAR_synt PF01259.18 gi|352683133|ref|YP_004893657.1| - 8.7e-43 146.7 0.0 1.1e-42 146.4 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase G-7-MTase PF12803.7 gi|352683133|ref|YP_004893657.1| - 0.14 11.3 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 mRNA (guanine-7-)methyltransferase (G-7-MTase) AIRS_C PF02769.22 gi|352683134|ref|YP_004893658.1| - 3.5e-17 62.9 0.1 2.2e-16 60.4 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|352683134|ref|YP_004893658.1| - 5.7e-13 49.3 0.7 1.3e-12 48.2 0.7 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain THF_DHG_CYH_C PF02882.19 gi|352683135|ref|YP_004893659.1| - 4.2e-42 143.2 0.0 6.9e-42 142.5 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|352683135|ref|YP_004893659.1| - 1.3e-21 77.0 0.0 2.1e-21 76.3 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DUF1403 PF07183.11 gi|352683135|ref|YP_004893659.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1403) Formyl_trans_N PF00551.19 gi|352683136|ref|YP_004893660.1| - 2.3e-30 105.7 0.0 3.4e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 Formyl transferase DUF4508 PF14969.6 gi|352683136|ref|YP_004893660.1| - 0.011 16.0 0.2 0.017 15.4 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4508) ATP-grasp PF02222.22 gi|352683137|ref|YP_004893661.1| - 3.7e-44 150.3 0.0 5.6e-44 149.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|352683137|ref|YP_004893661.1| - 5.6e-13 48.4 0.1 1.1e-12 47.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_5 PF13549.6 gi|352683137|ref|YP_004893661.1| - 0.075 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.19 gi|352683137|ref|YP_004893661.1| - 0.087 12.6 0.0 0.59 9.9 0.0 2.2 2 1 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AIRC PF00731.20 gi|352683138|ref|YP_004893662.1| - 6.2e-62 207.6 0.1 6.9e-62 207.4 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase AIRS_C PF02769.22 gi|352683139|ref|YP_004893663.1| - 2.2e-45 154.6 4.6 5.7e-27 94.8 0.7 2.7 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|352683139|ref|YP_004893663.1| - 7.9e-44 148.2 0.1 2.9e-21 75.9 0.0 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|352683139|ref|YP_004893663.1| - 3.5e-09 37.0 0.1 7e-09 36.1 0.1 1.5 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain Tegument_dsDNA PF12818.7 gi|352683139|ref|YP_004893663.1| - 0.026 13.7 0.0 2.7 7.1 0.0 2.8 3 0 0 3 3 3 0 dsDNA viral tegument protein ABC_tran PF00005.27 gi|352683141|ref|YP_004893665.1| - 2.8e-28 99.1 0.0 3.6e-28 98.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352683141|ref|YP_004893665.1| - 1.1e-06 28.7 2.7 0.007 16.2 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|352683141|ref|YP_004893665.1| - 1.3e-05 25.7 0.0 1.7e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|352683141|ref|YP_004893665.1| - 0.00015 21.6 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|352683141|ref|YP_004893665.1| - 0.00063 19.4 0.3 0.0014 18.3 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|352683141|ref|YP_004893665.1| - 0.0007 20.2 0.1 0.0011 19.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|352683141|ref|YP_004893665.1| - 0.0007 19.1 0.2 1.1 8.7 0.1 2.3 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|352683141|ref|YP_004893665.1| - 0.00098 19.4 0.2 0.0065 16.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|352683141|ref|YP_004893665.1| - 0.0019 18.1 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|352683141|ref|YP_004893665.1| - 0.029 14.8 0.0 0.13 12.7 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|352683141|ref|YP_004893665.1| - 0.087 11.6 0.1 11 4.7 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|352683141|ref|YP_004893665.1| - 0.099 12.6 0.0 0.22 11.4 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|352683141|ref|YP_004893665.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|352683141|ref|YP_004893665.1| - 0.14 12.3 0.1 0.47 10.5 0.1 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|352683141|ref|YP_004893665.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|352683142|ref|YP_004893666.1| - 3.3e-17 62.8 45.7 1.8e-10 40.8 15.6 3.6 2 1 1 3 3 3 3 Binding-protein-dependent transport system inner membrane component T2SSF PF00482.23 gi|352683142|ref|YP_004893666.1| - 0.03 14.3 0.0 0.03 14.3 0.0 3.1 4 0 0 4 4 4 0 Type II secretion system (T2SS), protein F DUF3754 PF12576.8 gi|352683142|ref|YP_004893666.1| - 0.14 12.1 2.6 1.6 8.7 0.3 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3754) TGT PF01702.18 gi|352683143|ref|YP_004893667.1| - 0.00059 19.1 0.0 0.0011 18.2 0.0 1.4 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase QueF PF14489.6 gi|352683144|ref|YP_004893668.1| - 9.1e-09 35.4 0.2 1.2e-08 35.0 0.2 1.2 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.22 gi|352683144|ref|YP_004893668.1| - 0.00018 21.0 0.3 0.00021 20.7 0.3 1.2 1 0 0 1 1 1 1 GTP cyclohydrolase I ABC_tran PF00005.27 gi|352683145|ref|YP_004893669.1| - 3.6e-26 92.3 0.0 5.6e-26 91.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352683145|ref|YP_004893669.1| - 5.6e-11 42.8 0.0 2.5e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|352683145|ref|YP_004893669.1| - 0.0004 20.8 0.2 0.00076 19.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|352683145|ref|YP_004893669.1| - 0.0061 16.3 0.7 0.011 15.4 0.2 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|352683145|ref|YP_004893669.1| - 0.009 16.5 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|352683145|ref|YP_004893669.1| - 0.011 16.1 0.0 0.033 14.6 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|352683145|ref|YP_004893669.1| - 0.014 14.4 0.2 0.026 13.5 0.2 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|352683145|ref|YP_004893669.1| - 0.016 15.0 0.1 0.031 14.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|352683145|ref|YP_004893669.1| - 0.031 14.3 0.0 0.19 11.8 0.0 2.2 3 0 0 3 3 3 0 AAA domain HTH_11 PF08279.12 gi|352683145|ref|YP_004893669.1| - 0.037 14.0 1.3 0.26 11.3 0.1 2.9 4 0 0 4 4 3 0 HTH domain SMC_N PF02463.19 gi|352683145|ref|YP_004893669.1| - 0.037 13.5 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TsaE PF02367.17 gi|352683145|ref|YP_004893669.1| - 0.038 14.0 0.1 0.069 13.2 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|352683145|ref|YP_004893669.1| - 0.044 13.7 0.0 0.097 12.6 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|352683145|ref|YP_004893669.1| - 0.045 13.9 0.2 0.1 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|352683145|ref|YP_004893669.1| - 0.045 13.1 0.1 0.1 12.0 0.1 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_27 PF13514.6 gi|352683145|ref|YP_004893669.1| - 0.046 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|352683145|ref|YP_004893669.1| - 0.064 13.5 0.0 0.13 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|352683145|ref|YP_004893669.1| - 0.077 13.1 0.1 0.2 11.7 0.2 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain MobB PF03205.14 gi|352683145|ref|YP_004893669.1| - 0.099 12.5 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|352683145|ref|YP_004893669.1| - 0.11 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|352683145|ref|YP_004893669.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|352683145|ref|YP_004893669.1| - 0.12 11.7 0.1 0.21 10.9 0.1 1.3 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|352683145|ref|YP_004893669.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|352683145|ref|YP_004893669.1| - 0.17 11.5 0.1 0.29 10.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RNA_helicase PF00910.22 gi|352683145|ref|YP_004893669.1| - 0.18 12.2 0.0 0.3 11.5 0.0 1.3 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|352683145|ref|YP_004893669.1| - 0.29 10.3 0.8 0.94 8.6 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain ABC2_membrane PF01061.24 gi|352683146|ref|YP_004893670.1| - 1.4e-05 24.7 21.9 1.4e-05 24.7 21.9 1.7 2 0 0 2 2 2 1 ABC-2 type transporter Trm112p PF03966.16 gi|352683147|ref|YP_004893671.1| - 4.7e-19 68.7 1.7 8.5e-19 67.9 1.7 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|352683147|ref|YP_004893671.1| - 0.0084 16.3 1.2 2.5 8.4 0.1 3.0 3 0 0 3 3 3 2 C4-type zinc ribbon domain DUF35_N PF12172.8 gi|352683147|ref|YP_004893671.1| - 0.028 14.3 6.6 0.17 11.8 0.0 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_15 PF17032.5 gi|352683147|ref|YP_004893671.1| - 0.029 15.1 2.8 0.04 14.7 2.8 1.3 1 0 0 1 1 1 0 zinc-ribbon family NOB1_Zn_bind PF08772.11 gi|352683147|ref|YP_004893671.1| - 0.13 12.4 0.7 0.29 11.3 0.1 1.8 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|352683147|ref|YP_004893671.1| - 0.16 12.0 2.1 0.3 11.1 1.8 1.6 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DHHA1 PF02272.19 gi|352683148|ref|YP_004893672.1| - 1.5e-08 35.1 0.0 2.6e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|352683148|ref|YP_004893672.1| - 4.5e-05 23.6 0.0 8.2e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 DHH family UIM PF02809.20 gi|352683148|ref|YP_004893672.1| - 0.068 13.1 0.6 0.14 12.1 0.6 1.5 1 0 0 1 1 1 0 Ubiquitin interaction motif Whib PF02467.16 gi|352683149|ref|YP_004893673.1| - 0.0025 18.4 0.6 0.0051 17.4 0.6 1.5 1 0 0 1 1 1 1 Transcription factor WhiB HHH PF00633.23 gi|352683149|ref|YP_004893673.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif HRDC PF00570.23 gi|352683149|ref|YP_004893673.1| - 0.022 14.7 0.1 0.058 13.4 0.0 1.7 2 0 0 2 2 2 0 HRDC domain Radical_SAM PF04055.21 gi|352683150|ref|YP_004893674.1| - 3.3e-17 63.4 0.0 5.6e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|352683150|ref|YP_004893674.1| - 9.1e-08 32.5 0.0 1.4e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|352683150|ref|YP_004893674.1| - 3.1e-05 24.1 0.0 4.8e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain OrfB_Zn_ribbon PF07282.11 gi|352683151|ref|YP_004893675.1| - 1.6e-11 44.0 0.0 2.8e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|352683151|ref|YP_004893675.1| - 0.00047 19.8 4.5 0.001 18.7 4.5 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|352683151|ref|YP_004893675.1| - 0.00069 19.5 0.7 0.0011 18.9 0.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|352683151|ref|YP_004893675.1| - 0.0012 18.5 0.3 0.0025 17.5 0.3 1.6 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|352683151|ref|YP_004893675.1| - 0.0036 17.3 1.0 0.0063 16.5 1.0 1.6 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|352683151|ref|YP_004893675.1| - 0.011 15.3 3.0 0.21 11.1 0.1 2.5 3 0 0 3 3 3 0 TFIIB zinc-binding DZR PF12773.7 gi|352683151|ref|YP_004893675.1| - 0.014 15.4 0.1 0.021 14.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon NRDD PF13597.6 gi|352683151|ref|YP_004893675.1| - 0.021 13.6 0.0 0.028 13.2 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|352683151|ref|YP_004893675.1| - 0.031 13.7 0.6 3.3 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.22 gi|352683151|ref|YP_004893675.1| - 0.036 14.0 0.1 0.059 13.3 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.13 gi|352683151|ref|YP_004893675.1| - 0.036 13.7 3.0 0.068 12.9 3.0 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Anti-TRAP PF15777.5 gi|352683151|ref|YP_004893675.1| - 0.071 13.1 0.2 0.13 12.3 0.2 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-Mss51 PF13824.6 gi|352683151|ref|YP_004893675.1| - 0.075 13.1 0.6 0.16 12.0 0.6 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 CpXC PF14353.6 gi|352683151|ref|YP_004893675.1| - 0.085 12.9 0.9 3.9 7.5 0.1 2.7 2 1 1 3 3 2 0 CpXC protein RNHCP PF12647.7 gi|352683151|ref|YP_004893675.1| - 0.11 12.5 0.2 0.19 11.7 0.2 1.3 1 0 0 1 1 1 0 RNHCP domain zinc-ribbons_6 PF07191.12 gi|352683151|ref|YP_004893675.1| - 0.12 12.4 0.7 0.21 11.6 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPCC PF14206.6 gi|352683151|ref|YP_004893675.1| - 0.14 12.0 0.2 0.23 11.3 0.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC PhnA_Zn_Ribbon PF08274.12 gi|352683151|ref|YP_004893675.1| - 0.16 12.0 0.1 0.29 11.1 0.1 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zf-TFIIB PF13453.6 gi|352683151|ref|YP_004893675.1| - 0.17 11.2 3.3 0.53 9.7 3.3 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|352683151|ref|YP_004893675.1| - 0.23 11.6 3.8 0.71 10.0 3.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|352683151|ref|YP_004893675.1| - 0.24 11.6 2.4 0.41 10.9 2.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) YhfH PF14149.6 gi|352683151|ref|YP_004893675.1| - 0.28 11.2 1.6 0.63 10.1 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-RRN7 PF11781.8 gi|352683151|ref|YP_004893675.1| - 0.3 10.8 3.1 6.5 6.5 1.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 UPF0547 PF10571.9 gi|352683151|ref|YP_004893675.1| - 0.34 11.0 3.4 6.3 7.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf_UBZ PF18439.1 gi|352683151|ref|YP_004893675.1| - 0.51 10.0 0.2 0.51 10.0 0.2 1.8 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-tcix PF14952.6 gi|352683151|ref|YP_004893675.1| - 0.54 9.9 3.1 9 6.0 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF5401 PF17380.2 gi|352683151|ref|YP_004893675.1| - 0.61 8.1 9.5 0.78 7.7 9.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) DUF2387 PF09526.10 gi|352683151|ref|YP_004893675.1| - 0.98 9.6 3.1 3 8.1 3.1 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_ligase_ZBD PF03119.16 gi|352683151|ref|YP_004893675.1| - 1.2 9.3 5.8 10 6.2 0.7 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.12 gi|352683151|ref|YP_004893675.1| - 1.6 8.8 4.1 4 7.5 0.3 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Topoisom_bac PF01131.20 gi|352683152|ref|YP_004893676.1| - 2.3e-77 260.7 0.2 6.3e-77 259.3 0.2 1.7 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|352683152|ref|YP_004893676.1| - 4.6e-21 75.0 0.1 4.3e-20 71.9 0.0 2.8 3 0 0 3 3 3 1 Toprim domain zf_Rg PF17915.1 gi|352683152|ref|YP_004893676.1| - 1.3e-13 50.1 0.4 2.7e-13 49.1 0.4 1.6 1 0 0 1 1 1 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|352683152|ref|YP_004893676.1| - 3.1e-11 43.4 0.0 7.9e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|352683152|ref|YP_004893676.1| - 1.6e-07 31.6 0.0 0.018 15.4 0.0 3.9 4 0 0 4 4 4 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|352683152|ref|YP_004893676.1| - 2.2e-05 24.5 0.0 5.4e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|352683152|ref|YP_004893676.1| - 0.002 17.8 0.1 0.0056 16.3 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|352683152|ref|YP_004893676.1| - 0.042 13.6 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|352683152|ref|YP_004893676.1| - 0.052 13.6 0.2 0.21 11.7 0.2 2.0 1 0 0 1 1 1 0 Helicase HerA, central domain CbiA PF01656.23 gi|352683152|ref|YP_004893676.1| - 0.17 12.0 0.1 3.9 7.5 0.0 3.0 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain ETF_alpha PF00766.19 gi|352683153|ref|YP_004893677.1| - 4.6e-30 103.5 0.0 8.3e-30 102.7 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|352683153|ref|YP_004893677.1| - 3e-17 63.1 0.6 4.7e-17 62.5 0.6 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|352683154|ref|YP_004893678.1| - 4e-44 150.7 5.9 4.9e-44 150.4 5.9 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Pyr_redox_2 PF07992.14 gi|352683155|ref|YP_004893679.1| - 2.3e-35 122.3 0.0 3.9e-35 121.5 0.0 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|352683155|ref|YP_004893679.1| - 2.4e-11 44.0 3.4 3.3e-06 27.6 0.3 2.6 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|352683155|ref|YP_004893679.1| - 4.7e-10 39.2 2.0 8.5e-06 25.2 0.0 3.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|352683155|ref|YP_004893679.1| - 9.2e-05 21.8 0.4 0.042 13.1 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_2 PF00890.24 gi|352683155|ref|YP_004893679.1| - 9.2e-05 21.7 7.4 0.14 11.2 0.3 3.3 3 0 0 3 3 3 2 FAD binding domain Shikimate_DH PF01488.20 gi|352683155|ref|YP_004893679.1| - 0.00039 20.5 0.3 0.095 12.8 0.0 3.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.14 gi|352683155|ref|YP_004893679.1| - 0.00043 19.1 2.8 0.00051 18.9 0.2 2.2 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|352683155|ref|YP_004893679.1| - 0.00046 20.4 4.3 0.00058 20.0 0.4 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|352683155|ref|YP_004893679.1| - 0.00071 18.8 4.6 0.069 12.2 0.3 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|352683155|ref|YP_004893679.1| - 0.003 18.0 0.2 2.5 8.6 0.0 2.4 2 1 0 2 2 2 2 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|352683155|ref|YP_004893679.1| - 0.0072 15.7 0.1 0.095 12.1 0.0 2.5 3 0 0 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|352683155|ref|YP_004893679.1| - 0.0077 16.1 0.9 0.11 12.4 0.1 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|352683155|ref|YP_004893679.1| - 0.0087 15.3 3.4 0.44 9.7 0.1 2.6 3 0 0 3 3 3 2 FAD binding domain FMO-like PF00743.19 gi|352683155|ref|YP_004893679.1| - 0.01 14.3 0.0 0.37 9.2 0.0 2.1 2 0 0 2 2 2 0 Flavin-binding monooxygenase-like FAD_oxidored PF12831.7 gi|352683155|ref|YP_004893679.1| - 0.01 15.2 6.0 0.45 9.8 0.4 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDE PF12483.8 gi|352683155|ref|YP_004893679.1| - 0.02 14.3 0.0 0.037 13.4 0.0 1.4 1 0 0 1 1 1 0 E3 Ubiquitin ligase K_oxygenase PF13434.6 gi|352683155|ref|YP_004893679.1| - 0.28 10.3 0.1 2.4 7.2 0.0 2.4 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|352683155|ref|YP_004893679.1| - 3.5 7.1 8.3 4.7 6.7 1.8 2.9 1 1 1 3 3 3 0 FAD dependent oxidoreductase Cytidylate_kin2 PF13189.6 gi|352683156|ref|YP_004893680.1| - 1.3e-18 67.7 1.2 9.2e-17 61.7 1.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|352683156|ref|YP_004893680.1| - 2.3e-13 50.4 2.3 3e-06 27.1 0.8 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|352683156|ref|YP_004893680.1| - 2.7e-12 47.3 0.1 3.7e-12 46.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|352683156|ref|YP_004893680.1| - 7.5e-12 45.8 0.2 1.8e-11 44.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|352683156|ref|YP_004893680.1| - 0.00016 21.8 2.1 0.00086 19.5 2.1 2.3 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.18 gi|352683156|ref|YP_004893680.1| - 0.00021 21.1 0.3 0.02 14.6 0.0 2.2 1 1 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|352683156|ref|YP_004893680.1| - 0.00038 20.9 0.1 0.00049 20.5 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|352683156|ref|YP_004893680.1| - 0.0016 18.6 0.3 0.012 15.8 0.3 2.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|352683156|ref|YP_004893680.1| - 0.0018 17.6 0.0 0.0035 16.7 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_28 PF13521.6 gi|352683156|ref|YP_004893680.1| - 0.0064 16.8 0.8 0.032 14.5 0.9 2.0 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|352683156|ref|YP_004893680.1| - 0.0092 16.4 0.0 0.018 15.4 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|352683156|ref|YP_004893680.1| - 0.015 15.4 0.0 0.027 14.6 0.0 1.5 1 0 0 1 1 1 0 Adenylate kinase AAA_5 PF07728.14 gi|352683156|ref|YP_004893680.1| - 0.026 14.5 0.1 0.061 13.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|352683156|ref|YP_004893680.1| - 0.028 13.9 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_24 PF13479.6 gi|352683156|ref|YP_004893680.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|352683156|ref|YP_004893680.1| - 0.035 14.0 0.0 0.063 13.2 0.0 1.5 1 0 0 1 1 1 0 NTPase NACHT PF05729.12 gi|352683156|ref|YP_004893680.1| - 0.048 13.6 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain dNK PF01712.19 gi|352683156|ref|YP_004893680.1| - 0.054 13.3 0.2 8.1 6.2 0.1 2.2 1 1 1 2 2 2 0 Deoxynucleoside kinase TsaE PF02367.17 gi|352683156|ref|YP_004893680.1| - 0.06 13.4 0.0 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|352683156|ref|YP_004893680.1| - 0.078 13.2 0.1 0.13 12.6 0.1 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|352683156|ref|YP_004893680.1| - 0.087 12.0 0.1 0.14 11.3 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain SMC_N PF02463.19 gi|352683156|ref|YP_004893680.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain RuvB_N PF05496.12 gi|352683156|ref|YP_004893680.1| - 0.15 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Ribosomal_L34e PF01199.18 gi|352683157|ref|YP_004893681.1| - 2.7e-13 50.1 0.4 3e-13 49.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L34e ABC_tran PF00005.27 gi|352683158|ref|YP_004893682.1| - 2e-17 64.0 0.0 1.6e-16 61.1 0.0 2.3 2 2 1 3 3 2 1 ABC transporter AAA_21 PF13304.6 gi|352683158|ref|YP_004893682.1| - 2.9e-15 56.9 0.0 8.3e-07 29.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352683158|ref|YP_004893682.1| - 1.4e-09 37.7 0.0 0.00029 20.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|352683158|ref|YP_004893682.1| - 9.8e-07 29.5 0.0 1.5e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|352683158|ref|YP_004893682.1| - 0.00061 18.7 0.6 0.052 12.3 0.1 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_13 PF13166.6 gi|352683158|ref|YP_004893682.1| - 0.00083 18.1 0.0 0.0015 17.3 0.0 1.4 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|352683158|ref|YP_004893682.1| - 0.0014 18.3 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|352683158|ref|YP_004893682.1| - 0.0022 18.4 0.3 0.011 16.2 0.1 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|352683158|ref|YP_004893682.1| - 0.0044 16.8 0.1 0.0073 16.0 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|352683158|ref|YP_004893682.1| - 0.01 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|352683158|ref|YP_004893682.1| - 0.019 15.2 0.0 0.025 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|352683158|ref|YP_004893682.1| - 0.019 14.7 0.0 0.089 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|352683158|ref|YP_004893682.1| - 0.022 14.4 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.29 gi|352683158|ref|YP_004893682.1| - 0.033 14.6 0.1 0.093 13.2 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|352683158|ref|YP_004893682.1| - 0.034 13.7 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|352683158|ref|YP_004893682.1| - 0.044 13.4 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|352683158|ref|YP_004893682.1| - 0.054 14.0 0.0 0.75 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|352683158|ref|YP_004893682.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|352683158|ref|YP_004893682.1| - 0.069 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|352683158|ref|YP_004893682.1| - 0.073 10.6 0.2 0.098 10.2 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|352683158|ref|YP_004893682.1| - 0.091 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_14 PF13173.6 gi|352683158|ref|YP_004893682.1| - 0.11 12.5 0.0 0.62 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|352683158|ref|YP_004893682.1| - 0.13 12.2 0.3 0.77 9.8 0.1 2.2 2 1 1 3 3 3 0 AAA domain (dynein-related subfamily) Rad17 PF03215.15 gi|352683158|ref|YP_004893682.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain MutS_V PF00488.21 gi|352683158|ref|YP_004893682.1| - 0.15 12.0 0.0 1.4 8.9 0.0 2.3 2 1 0 2 2 2 0 MutS domain V AAA_33 PF13671.6 gi|352683158|ref|YP_004893682.1| - 0.15 12.2 0.0 0.41 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|352683158|ref|YP_004893682.1| - 0.18 10.6 0.1 0.33 9.7 0.1 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_24 PF13479.6 gi|352683158|ref|YP_004893682.1| - 0.21 11.3 0.0 0.33 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain FecCD PF01032.18 gi|352683159|ref|YP_004893683.1| - 2.5e-57 194.3 31.0 3e-57 194.0 31.0 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|352683159|ref|YP_004893683.1| - 3.1e-05 23.6 15.9 6.7e-05 22.5 15.8 1.8 1 1 0 1 1 1 1 ABC 3 transport family Peripla_BP_2 PF01497.18 gi|352683160|ref|YP_004893684.1| - 7.1e-26 91.2 0.0 1e-25 90.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Mucin PF01456.17 gi|352683160|ref|YP_004893684.1| - 2.1 8.4 16.6 3.6 7.6 16.6 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein NurA PF09376.10 gi|352683161|ref|YP_004893685.1| - 4.3e-26 92.1 0.0 9.9e-26 90.9 0.0 1.6 1 1 0 1 1 1 1 NurA domain PNP_UDP_1 PF01048.20 gi|352683162|ref|YP_004893686.1| - 1.1e-40 139.3 0.0 1.3e-40 139.2 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily SUI1 PF01253.22 gi|352683164|ref|YP_004893688.1| - 1.6e-16 60.5 0.1 2.5e-16 60.0 0.1 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|352683164|ref|YP_004893688.1| - 0.0079 16.5 0.1 0.011 16.0 0.1 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) IDO PF01231.18 gi|352683165|ref|YP_004893689.1| - 0.04 12.7 0.0 0.043 12.6 0.0 1.0 1 0 0 1 1 1 0 Indoleamine 2,3-dioxygenase DUF4298 PF14131.6 gi|352683165|ref|YP_004893689.1| - 0.074 13.0 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) tRNA-synt_1d PF00750.19 gi|352683166|ref|YP_004893690.1| - 7e-34 117.3 0.5 3.3e-24 85.5 0.2 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|352683166|ref|YP_004893690.1| - 1.7e-29 102.4 0.0 2.6e-28 98.6 0.0 2.8 2 1 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1g PF09334.11 gi|352683166|ref|YP_004893690.1| - 0.00053 18.8 0.1 0.1 11.4 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (M) PRP38 PF03371.15 gi|352683166|ref|YP_004893690.1| - 0.0048 16.8 0.0 0.0099 15.8 0.0 1.4 1 0 0 1 1 1 1 PRP38 family tRNA-synt_1e PF01406.19 gi|352683166|ref|YP_004893690.1| - 0.0062 15.9 0.1 0.046 13.1 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1 PF00133.22 gi|352683166|ref|YP_004893690.1| - 0.029 12.6 0.2 1.6 6.9 0.0 2.8 3 0 0 3 3 3 0 tRNA synthetases class I (I, L, M and V) Ribosomal_L7Ae PF01248.26 gi|352683167|ref|YP_004893691.1| - 5.9e-29 99.7 0.7 7.7e-29 99.3 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|352683167|ref|YP_004893691.1| - 6e-05 22.8 0.1 8.8e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|352683167|ref|YP_004893691.1| - 0.0074 16.4 0.0 0.0084 16.2 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 Ribosomal_L24e PF01246.20 gi|352683168|ref|YP_004893692.1| - 1.6e-20 73.1 0.7 1.6e-20 73.0 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|352683168|ref|YP_004893692.1| - 0.014 15.3 0.3 0.019 14.9 0.3 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-HIT PF04438.16 gi|352683168|ref|YP_004893692.1| - 0.016 15.0 2.4 0.04 13.8 2.4 1.6 1 1 0 1 1 1 0 HIT zinc finger Desulfoferrod_N PF06397.12 gi|352683168|ref|YP_004893692.1| - 0.037 13.7 0.2 0.065 12.9 0.2 1.4 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DUF2175 PF09943.9 gi|352683168|ref|YP_004893692.1| - 0.11 12.9 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) VATC PF18716.1 gi|352683168|ref|YP_004893692.1| - 0.17 11.8 3.8 0.45 10.4 3.8 1.7 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_S28e PF01200.18 gi|352683169|ref|YP_004893693.1| - 3.6e-30 103.7 5.6 4e-30 103.6 5.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e DUF4199 PF13858.6 gi|352683170|ref|YP_004893694.1| - 0.046 14.1 0.6 0.046 14.1 0.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) DUF131 PF01998.17 gi|352683170|ref|YP_004893694.1| - 0.71 9.6 10.3 0.039 13.6 4.3 1.9 1 1 1 2 2 2 0 Protein of unknown function DUF131 Oxidored_q2 PF00420.24 gi|352683170|ref|YP_004893694.1| - 1.1 9.0 11.2 2.9 7.6 11.2 1.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sugar_tr PF00083.24 gi|352683170|ref|YP_004893694.1| - 3.1 6.6 10.2 3.4 6.4 10.2 1.2 1 0 0 1 1 1 0 Sugar (and other) transporter DUF2070 PF09843.9 gi|352683170|ref|YP_004893694.1| - 4.1 5.6 6.7 4.2 5.5 6.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) TssN PF17555.2 gi|352683170|ref|YP_004893694.1| - 5.6 6.3 6.0 0.78 9.1 1.6 1.7 2 0 0 2 2 2 0 Type VI secretion system, TssN DUF872 PF05915.12 gi|352683170|ref|YP_004893694.1| - 6 7.1 7.0 1.2 9.3 2.3 1.9 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF131 PF01998.17 gi|352683171|ref|YP_004893695.1| - 8e-18 63.9 6.6 8e-18 63.9 6.6 1.8 1 1 1 2 2 2 1 Protein of unknown function DUF131 TMEM51 PF15345.6 gi|352683171|ref|YP_004893695.1| - 0.19 11.6 0.7 0.22 11.3 0.7 1.2 1 1 0 1 1 1 0 Transmembrane protein 51 DUF2207 PF09972.9 gi|352683171|ref|YP_004893695.1| - 1.1 8.0 4.6 1.3 7.7 4.6 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Oxidored_q2 PF00420.24 gi|352683171|ref|YP_004893695.1| - 1.9 8.1 10.3 1.8 8.2 2.4 2.1 1 1 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF4282 PF14110.6 gi|352683171|ref|YP_004893695.1| - 2 9.2 9.4 94 3.8 8.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4282) KASH PF10541.9 gi|352683171|ref|YP_004893695.1| - 3.8 7.8 6.4 2.8 8.3 2.0 2.1 2 0 0 2 2 2 0 Nuclear envelope localisation domain CbtB PF09489.10 gi|352683171|ref|YP_004893695.1| - 9.6 6.4 7.0 17 5.6 0.5 2.3 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) 4HBT PF03061.22 gi|352683172|ref|YP_004893696.1| - 9e-15 54.8 0.1 1.5e-14 54.1 0.1 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|352683172|ref|YP_004893696.1| - 0.0016 18.6 0.0 0.0019 18.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|352683172|ref|YP_004893696.1| - 0.21 11.8 0.0 0.26 11.5 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Peptidase_M48 PF01435.18 gi|352683173|ref|YP_004893697.1| - 4.3e-31 108.2 0.0 7e-31 107.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 MFS_1 PF07690.16 gi|352683174|ref|YP_004893698.1| - 8.2e-40 136.8 51.7 8.2e-40 136.8 51.7 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Homoserine_dh PF00742.19 gi|352683175|ref|YP_004893699.1| - 2.5e-36 125.2 0.1 1e-35 123.2 0.1 1.9 1 1 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|352683175|ref|YP_004893699.1| - 0.00019 22.0 0.0 0.0011 19.6 0.0 2.1 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.21 gi|352683175|ref|YP_004893699.1| - 0.0021 17.8 0.0 0.0032 17.2 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DapB_N PF01113.20 gi|352683175|ref|YP_004893699.1| - 0.0061 16.7 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus PglD_N PF17836.1 gi|352683175|ref|YP_004893699.1| - 0.0077 16.8 0.3 0.017 15.7 0.1 1.7 2 0 0 2 2 2 1 PglD N-terminal domain Sacchrp_dh_NADP PF03435.18 gi|352683175|ref|YP_004893699.1| - 0.043 14.1 0.2 1.5 9.1 0.2 2.9 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Gp_dh_N PF00044.24 gi|352683175|ref|YP_004893699.1| - 0.17 12.3 0.2 0.39 11.1 0.2 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Na_H_Exchanger PF00999.21 gi|352683176|ref|YP_004893700.1| - 2.6e-50 171.3 45.0 3.1e-50 171.1 45.0 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF1269 PF06897.12 gi|352683176|ref|YP_004893700.1| - 0.058 13.7 0.7 0.058 13.7 0.7 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF1269) Semialdhyde_dh PF01118.24 gi|352683177|ref|YP_004893701.1| - 1.6e-34 118.9 0.0 2.7e-34 118.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|352683177|ref|YP_004893701.1| - 4.2e-33 115.0 0.0 7e-33 114.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|352683177|ref|YP_004893701.1| - 0.015 15.4 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Epimerase PF01370.21 gi|352683177|ref|YP_004893701.1| - 0.077 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AA_kinase PF00696.28 gi|352683178|ref|YP_004893702.1| - 3.5e-41 141.4 0.0 5.5e-41 140.8 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family PALP PF00291.25 gi|352683179|ref|YP_004893703.1| - 5.9e-68 229.4 1.6 6.8e-68 229.2 1.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peptidase_S49 PF01343.18 gi|352683180|ref|YP_004893704.1| - 1e-16 61.2 1.1 5.1e-07 29.8 0.6 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|352683180|ref|YP_004893704.1| - 2.9e-10 40.3 0.1 9.3e-09 35.4 0.1 2.2 2 0 0 2 2 2 1 Clp protease ABC_transp_aux PF09822.9 gi|352683180|ref|YP_004893704.1| - 3.3e-05 23.5 0.0 4.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|352683180|ref|YP_004893704.1| - 0.033 14.6 0.0 0.095 13.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4350) MarC PF01914.17 gi|352683181|ref|YP_004893705.1| - 7.3e-27 94.1 16.0 9.2e-27 93.7 16.0 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Acetyltransf_1 PF00583.25 gi|352683182|ref|YP_004893706.1| - 2.6e-10 40.5 0.2 4.7e-10 39.7 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|352683182|ref|YP_004893706.1| - 2.4e-08 34.3 0.2 4.8e-08 33.3 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|352683182|ref|YP_004893706.1| - 1.4e-07 31.4 0.1 3.2e-07 30.2 0.1 1.7 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|352683182|ref|YP_004893706.1| - 9.4e-07 28.8 0.0 1.3e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|352683182|ref|YP_004893706.1| - 0.015 15.4 0.0 0.06 13.5 0.0 2.0 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|352683182|ref|YP_004893706.1| - 0.053 14.2 0.0 0.088 13.5 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain YrbL-PhoP_reg PF10707.9 gi|352683182|ref|YP_004893706.1| - 0.13 11.7 0.0 0.35 10.3 0.0 1.6 2 0 0 2 2 2 0 PhoP regulatory network protein YrbL ATP-grasp_5 PF13549.6 gi|352683183|ref|YP_004893707.1| - 7.9e-75 251.1 0.1 8.8e-75 251.0 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|352683183|ref|YP_004893707.1| - 0.00024 20.7 0.0 0.00045 19.9 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|352683183|ref|YP_004893707.1| - 0.0015 18.1 0.0 0.0021 17.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|352683183|ref|YP_004893707.1| - 0.041 13.4 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|352683184|ref|YP_004893708.1| - 4.3e-52 175.6 0.7 9.3e-51 171.3 0.2 3.0 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|352683184|ref|YP_004893708.1| - 1e-22 80.8 1.0 2.6e-22 79.5 0.2 2.1 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|352683184|ref|YP_004893708.1| - 2.9e-11 43.9 0.3 6.9e-11 42.7 0.3 1.6 1 0 0 1 1 1 1 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|352683184|ref|YP_004893708.1| - 0.0003 20.8 0.1 0.0018 18.3 0.0 2.0 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|352683184|ref|YP_004893708.1| - 0.024 15.2 0.2 0.12 13.0 0.1 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Methyltransf_25 PF13649.6 gi|352683185|ref|YP_004893709.1| - 0.087 13.5 0.0 0.15 12.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Zea_mays_MuDR PF05928.11 gi|352683185|ref|YP_004893709.1| - 0.11 12.1 0.1 0.17 11.5 0.1 1.2 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) Methyltransf_12 PF08242.12 gi|352683185|ref|YP_004893709.1| - 0.17 12.6 0.0 0.32 11.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ribosomal_L40e PF01020.17 gi|352683186|ref|YP_004893710.1| - 4.4e-07 29.7 3.0 5.1e-07 29.5 3.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|352683186|ref|YP_004893710.1| - 3.9e-06 26.4 4.5 5.2e-06 26.0 4.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|352683186|ref|YP_004893710.1| - 0.00014 21.8 0.8 0.00016 21.7 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|352683186|ref|YP_004893710.1| - 0.00028 20.1 3.4 0.00036 19.8 3.4 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DUF35_N PF12172.8 gi|352683186|ref|YP_004893710.1| - 0.001 18.9 3.4 0.0016 18.2 3.4 1.3 1 1 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|352683186|ref|YP_004893710.1| - 0.0012 18.9 0.3 0.0013 18.8 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|352683186|ref|YP_004893710.1| - 0.0019 17.6 3.9 0.0025 17.1 3.9 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-IS66 PF13005.7 gi|352683186|ref|YP_004893710.1| - 0.0037 17.6 1.3 0.12 12.8 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf_C2H2_13 PF18508.1 gi|352683186|ref|YP_004893710.1| - 0.025 14.2 0.2 0.025 14.2 0.2 2.0 2 0 0 2 2 2 0 Zinc finger domain DNA_RNApol_7kD PF03604.13 gi|352683186|ref|YP_004893710.1| - 0.032 13.9 9.0 0.48 10.2 8.1 2.3 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.6 gi|352683186|ref|YP_004893710.1| - 0.038 14.7 4.1 0.63 10.7 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 XPA_N PF01286.18 gi|352683186|ref|YP_004893710.1| - 0.046 13.8 3.2 0.26 11.4 0.7 2.2 2 0 0 2 2 2 0 XPA protein N-terminal TF_Zn_Ribbon PF08271.12 gi|352683186|ref|YP_004893710.1| - 0.057 12.9 2.8 3 7.4 0.1 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding CpXC PF14353.6 gi|352683186|ref|YP_004893710.1| - 0.097 12.7 1.0 0.42 10.7 0.3 1.9 1 1 1 2 2 2 0 CpXC protein OrfB_Zn_ribbon PF07282.11 gi|352683186|ref|YP_004893710.1| - 0.15 12.0 3.0 0.2 11.6 3.0 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-CCHC PF00098.23 gi|352683186|ref|YP_004893710.1| - 0.15 12.2 6.8 2.4 8.4 1.0 2.2 2 0 0 2 2 2 0 Zinc knuckle zf-ACC PF17848.1 gi|352683186|ref|YP_004893710.1| - 0.18 11.9 4.2 2.9 8.0 0.9 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|352683186|ref|YP_004893710.1| - 0.19 11.8 5.1 1.3 9.2 5.1 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-CCHC_2 PF13696.6 gi|352683186|ref|YP_004893710.1| - 0.2 11.5 4.7 3.7 7.5 0.2 2.3 2 0 0 2 2 2 0 Zinc knuckle RNA_POL_M_15KD PF02150.16 gi|352683186|ref|YP_004893710.1| - 0.27 11.1 5.2 0.75 9.7 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_13 PF09855.9 gi|352683186|ref|YP_004893710.1| - 0.37 11.0 3.2 4.2 7.6 0.4 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rubredoxin_2 PF18073.1 gi|352683186|ref|YP_004893710.1| - 0.7 9.7 6.4 12 5.7 6.9 2.0 1 1 1 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L37e PF01907.19 gi|352683186|ref|YP_004893710.1| - 0.79 9.9 8.0 1 9.6 1.4 2.1 1 1 0 1 1 1 0 Ribosomal protein L37e Fer4_15 PF13459.6 gi|352683187|ref|YP_004893711.1| - 4e-12 46.7 0.3 4.5e-12 46.5 0.3 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|352683187|ref|YP_004893711.1| - 8e-09 35.9 0.1 1.1e-08 35.4 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|352683187|ref|YP_004893711.1| - 0.013 15.3 2.0 0.29 11.0 0.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain HypA PF01155.19 gi|352683188|ref|YP_004893712.1| - 9.3e-05 22.4 0.1 0.00011 22.2 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|352683188|ref|YP_004893712.1| - 0.0026 17.8 3.3 0.0051 16.9 3.3 1.4 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|352683188|ref|YP_004893712.1| - 0.055 13.5 1.4 0.12 12.4 1.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|352683188|ref|YP_004893712.1| - 0.061 13.2 1.6 0.1 12.5 0.1 1.9 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.12 gi|352683188|ref|YP_004893712.1| - 0.15 12.0 1.5 1.1 9.3 0.4 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.9 gi|352683188|ref|YP_004893712.1| - 0.17 12.0 6.7 0.67 10.1 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ALGX PF16822.5 gi|352683188|ref|YP_004893712.1| - 0.22 11.2 0.0 0.24 11.0 0.0 1.1 1 0 0 1 1 1 0 SGNH hydrolase-like domain, acetyltransferase AlgX zinc_ribbon_2 PF13240.6 gi|352683188|ref|YP_004893712.1| - 0.32 10.8 2.7 0.91 9.3 2.7 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|352683188|ref|YP_004893712.1| - 1.9 8.3 8.1 0.61 9.9 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain NUDIX PF00293.28 gi|352683190|ref|YP_004893714.1| - 9e-17 61.3 0.0 1.1e-16 61.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|352683190|ref|YP_004893714.1| - 0.00031 20.7 0.0 0.00061 19.8 0.0 1.5 1 1 0 1 1 1 1 NUDIX domain Carb_kinase PF01256.17 gi|352683191|ref|YP_004893715.1| - 2.3e-57 194.3 1.0 3.7e-57 193.6 1.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|352683191|ref|YP_004893715.1| - 9.9e-43 146.0 1.0 9.9e-43 146.0 1.0 1.8 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|352683191|ref|YP_004893715.1| - 2.8e-09 36.8 0.0 7.4e-09 35.3 0.0 1.7 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|352683191|ref|YP_004893715.1| - 0.0026 17.2 0.1 0.0053 16.2 0.1 1.5 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Peptidase_M16 PF00675.20 gi|352683192|ref|YP_004893716.1| - 2.4e-16 60.1 0.0 4.9e-16 59.0 0.0 1.5 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|352683192|ref|YP_004893716.1| - 2.1e-13 50.7 0.0 3.9e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase M16 inactive domain Wyosine_form PF08608.12 gi|352683193|ref|YP_004893717.1| - 1.3e-20 73.5 0.0 2.5e-20 72.6 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|352683193|ref|YP_004893717.1| - 9.8e-20 71.6 0.0 4.6e-19 69.4 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily TIR_2 PF13676.6 gi|352683193|ref|YP_004893717.1| - 0.15 12.6 0.3 0.35 11.5 0.3 1.6 1 0 0 1 1 1 0 TIR domain Pterin_bind PF00809.22 gi|352683195|ref|YP_004893719.1| - 0.083 12.6 0.0 0.094 12.4 0.0 1.0 1 0 0 1 1 1 0 Pterin binding enzyme SPO11_like PF03533.14 gi|352683195|ref|YP_004893719.1| - 0.094 12.8 0.0 7.8 6.7 0.0 2.2 2 0 0 2 2 2 0 SPO11 homologue Nuc_deoxyrib_tr PF05014.15 gi|352683197|ref|YP_004893721.1| - 0.00011 22.2 0.0 0.00051 20.1 0.0 2.1 3 0 0 3 3 3 1 Nucleoside 2-deoxyribosyltransferase AAA_17 PF13207.6 gi|352683197|ref|YP_004893721.1| - 0.01 16.3 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain HetR_C PF18460.1 gi|352683197|ref|YP_004893721.1| - 0.039 13.9 0.1 0.16 11.9 0.1 2.0 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain CarboxypepD_reg PF13620.6 gi|352683198|ref|YP_004893722.1| - 2.2e-06 27.8 21.3 2.3e-06 27.8 4.3 6.0 6 1 0 6 6 6 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|352683198|ref|YP_004893722.1| - 3.6e-05 23.7 1.9 0.0058 16.6 0.2 3.6 2 1 1 3 3 3 1 CarboxypepD_reg-like domain MG4 PF17789.1 gi|352683198|ref|YP_004893722.1| - 0.0097 16.0 4.8 0.073 13.2 0.1 4.1 4 1 1 5 5 5 1 Macroglobulin domain MG4 SdrD_B PF17210.3 gi|352683198|ref|YP_004893722.1| - 0.051 13.8 2.7 0.34 11.1 0.1 3.3 3 1 1 4 4 4 0 SdrD B-like domain Rhamnogal_lyase PF06045.11 gi|352683198|ref|YP_004893722.1| - 0.087 12.2 0.1 0.23 10.8 0.1 1.7 1 0 0 1 1 1 0 Rhamnogalacturonate lyase family DUF824 PF05688.11 gi|352683198|ref|YP_004893722.1| - 0.34 10.8 1.8 7.1 6.5 0.2 3.4 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) SWM_repeat PF13753.6 gi|352683198|ref|YP_004893722.1| - 7.9 6.7 16.5 0.91 9.7 2.0 4.5 5 0 0 5 5 5 0 Putative flagellar system-associated repeat Cupin_2 PF07883.11 gi|352683199|ref|YP_004893723.1| - 8.9e-14 51.0 0.0 1.1e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|352683199|ref|YP_004893723.1| - 4.8e-10 39.5 0.0 6e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|352683199|ref|YP_004893723.1| - 4.3e-05 23.1 0.0 7e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 Cupin ARD PF03079.14 gi|352683199|ref|YP_004893723.1| - 4.9e-05 23.6 0.0 6.2e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family DMSP_lyase PF16867.5 gi|352683199|ref|YP_004893723.1| - 0.00048 19.8 0.0 0.00073 19.2 0.0 1.3 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase AraC_binding_2 PF14525.6 gi|352683199|ref|YP_004893723.1| - 0.031 13.9 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 AraC-binding-like domain Cupin_3 PF05899.12 gi|352683199|ref|YP_004893723.1| - 0.042 13.6 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|352683199|ref|YP_004893723.1| - 0.047 13.6 0.0 0.059 13.3 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase KduI PF04962.12 gi|352683199|ref|YP_004893723.1| - 0.086 12.1 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 KduI/IolB family TPP_enzyme_C PF02775.21 gi|352683200|ref|YP_004893724.1| - 4.6e-28 97.9 0.3 7.2e-28 97.3 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|352683201|ref|YP_004893725.1| - 1.4e-73 247.5 2.5 2.2e-73 246.8 1.9 1.7 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|352683201|ref|YP_004893725.1| - 1.3e-25 89.7 0.1 2.5e-25 88.7 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|352683201|ref|YP_004893725.1| - 3.5e-06 26.9 0.0 8.9e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|352683202|ref|YP_004893726.1| - 9.4e-14 50.6 15.4 2.1e-07 30.5 4.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|352683202|ref|YP_004893726.1| - 3e-11 43.3 7.1 4e-11 42.9 7.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|352683202|ref|YP_004893726.1| - 8.6e-09 35.4 5.0 1.1e-08 35.1 5.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|352683202|ref|YP_004893726.1| - 1.9e-08 35.1 8.8 0.001 19.9 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|352683202|ref|YP_004893726.1| - 2.2e-08 34.6 10.2 4.3e-08 33.6 10.2 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|352683202|ref|YP_004893726.1| - 2.2e-08 34.1 7.2 0.00061 19.9 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|352683202|ref|YP_004893726.1| - 2.5e-08 33.7 13.7 9.6e-05 22.3 3.5 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|352683202|ref|YP_004893726.1| - 1e-06 28.5 12.1 0.0013 18.7 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|352683202|ref|YP_004893726.1| - 4.3e-05 23.9 7.9 7.6e-05 23.1 7.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|352683202|ref|YP_004893726.1| - 0.00032 21.0 12.7 0.0032 17.9 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|352683202|ref|YP_004893726.1| - 0.00098 19.6 11.7 0.025 15.1 12.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|352683202|ref|YP_004893726.1| - 0.00098 19.8 10.1 0.42 11.4 0.4 2.9 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|352683202|ref|YP_004893726.1| - 0.0014 19.2 11.6 0.015 15.8 1.7 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|352683202|ref|YP_004893726.1| - 0.0067 17.2 10.9 0.0069 17.2 1.2 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain POR PF01558.18 gi|352683203|ref|YP_004893727.1| - 6.7e-37 127.3 0.6 5.3e-36 124.3 0.6 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AFOR_N PF02730.15 gi|352683204|ref|YP_004893728.1| - 1.6e-35 122.8 0.1 2.4e-35 122.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|352683204|ref|YP_004893728.1| - 6e-15 55.1 0.0 1.2e-14 54.2 0.0 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CBS PF00571.28 gi|352683205|ref|YP_004893729.1| - 9.1e-29 99.7 1.9 3e-13 50.0 0.1 2.2 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|352683205|ref|YP_004893729.1| - 0.028 14.7 0.2 7.1 7.0 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Rib_5-P_isom_A PF06026.14 gi|352683206|ref|YP_004893730.1| - 6.4e-48 162.6 0.0 7.6e-48 162.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|352683206|ref|YP_004893730.1| - 3e-06 27.2 0.0 7e-06 26.1 0.0 1.6 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|352683206|ref|YP_004893730.1| - 0.039 13.1 0.0 0.092 11.9 0.0 1.6 1 1 1 2 2 2 0 Putative sugar-binding domain Sacchrp_dh_NADP PF03435.18 gi|352683206|ref|YP_004893730.1| - 0.073 13.3 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CoA_trans PF01144.23 gi|352683206|ref|YP_004893730.1| - 0.17 11.3 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Coenzyme A transferase Radical_SAM PF04055.21 gi|352683207|ref|YP_004893731.1| - 5.8e-21 75.6 0.0 9.9e-21 74.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SLATT_1 PF18181.1 gi|352683208|ref|YP_004893732.1| - 0.16 11.9 1.6 0.26 11.2 1.6 1.4 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 1 AIRS PF00586.24 gi|352683209|ref|YP_004893733.1| - 3.6e-12 46.8 0.2 6.8e-12 45.9 0.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF92 PF01940.16 gi|352683211|ref|YP_004893735.1| - 1.4e-50 171.9 10.3 1.7e-50 171.7 10.3 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 Asparaginase PF00710.20 gi|352683213|ref|YP_004893737.1| - 6.2e-55 185.7 0.1 1.2e-54 184.8 0.1 1.4 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|352683213|ref|YP_004893737.1| - 7.2e-28 97.1 0.0 1.9e-27 95.7 0.0 1.7 1 0 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|352683213|ref|YP_004893737.1| - 9.6e-13 47.2 0.1 2.5e-12 45.9 0.1 1.7 1 0 0 1 1 1 1 GatD N-terminal domain Peripla_BP_4 PF13407.6 gi|352683213|ref|YP_004893737.1| - 0.018 14.7 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding protein domain HD_2 PF12917.7 gi|352683214|ref|YP_004893738.1| - 2.6e-12 46.9 0.0 1.3e-08 34.9 0.0 2.1 2 0 0 2 2 2 2 HD containing hydrolase-like enzyme HD_3 PF13023.6 gi|352683214|ref|YP_004893738.1| - 2e-09 37.6 0.0 3.1e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 HD domain HD PF01966.22 gi|352683214|ref|YP_004893738.1| - 2.2e-05 24.7 0.2 5.5e-05 23.4 0.2 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|352683214|ref|YP_004893738.1| - 0.0005 19.6 0.1 0.00074 19.1 0.1 1.2 1 0 0 1 1 1 1 HDOD domain zf-ZPR1 PF03367.13 gi|352683215|ref|YP_004893739.1| - 7.4e-30 103.9 0.0 8.7e-30 103.7 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain DUF3107 PF11305.8 gi|352683215|ref|YP_004893739.1| - 0.0018 18.5 0.0 0.0032 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3107) ADD_ATRX PF17981.1 gi|352683215|ref|YP_004893739.1| - 0.0075 16.1 0.5 0.014 15.3 0.5 1.3 1 0 0 1 1 1 1 Cysteine Rich ADD domain zf-NADH-PPase PF09297.11 gi|352683215|ref|YP_004893739.1| - 0.0091 15.6 2.1 1.1 9.0 0.1 2.5 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|352683215|ref|YP_004893739.1| - 0.01 15.2 1.4 1.7 8.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|352683215|ref|YP_004893739.1| - 0.073 12.8 1.5 7.6 6.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|352683215|ref|YP_004893739.1| - 0.081 13.1 0.3 7 6.8 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|352683215|ref|YP_004893739.1| - 0.092 12.6 3.4 1.5 8.8 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.19 gi|352683215|ref|YP_004893739.1| - 0.094 12.9 0.6 4.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|352683215|ref|YP_004893739.1| - 0.16 11.5 1.6 22 4.7 0.1 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding DUF983 PF06170.12 gi|352683215|ref|YP_004893739.1| - 0.22 11.9 1.4 4.1 7.9 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF983) UPF0547 PF10571.9 gi|352683215|ref|YP_004893739.1| - 0.54 10.4 3.8 1.9 8.7 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_RNApol_7kD PF03604.13 gi|352683215|ref|YP_004893739.1| - 0.98 9.2 3.7 7.4 6.3 0.4 2.6 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Bax1-I PF01027.20 gi|352683216|ref|YP_004893740.1| - 0.00042 20.2 7.0 0.00049 20.0 7.0 1.0 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 Cyt_bd_oxida_II PF02322.15 gi|352683216|ref|YP_004893740.1| - 0.00077 18.9 9.4 0.00089 18.7 9.4 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF2339 PF10101.9 gi|352683216|ref|YP_004893740.1| - 0.00098 17.8 11.3 0.0012 17.6 11.3 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2339) ABC2_membrane_2 PF12679.7 gi|352683216|ref|YP_004893740.1| - 0.5 9.6 9.5 0.68 9.2 9.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Flp_Fap PF04964.14 gi|352683216|ref|YP_004893740.1| - 0.73 9.7 0.2 0.73 9.7 0.2 2.6 3 0 0 3 3 3 0 Flp/Fap pilin component DUF2070 PF09843.9 gi|352683216|ref|YP_004893740.1| - 2.1 6.6 6.5 2.3 6.4 6.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Wzy_C PF04932.15 gi|352683216|ref|YP_004893740.1| - 6.2 6.4 14.3 1.6 8.3 10.2 1.8 1 1 1 2 2 2 0 O-Antigen ligase TraA PF05513.11 gi|352683216|ref|YP_004893740.1| - 6.8 7.1 8.9 2e+02 2.3 8.9 2.0 1 1 0 1 1 1 0 TraA AA_kinase PF00696.28 gi|352683217|ref|YP_004893741.1| - 1.5e-32 113.1 0.1 1.7e-32 112.9 0.1 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.17 gi|352683218|ref|YP_004893742.1| - 4e-54 183.4 0.0 1.2e-53 181.8 0.0 1.7 1 1 1 2 2 2 1 Polyprenyl synthetase Annexin PF00191.20 gi|352683218|ref|YP_004893742.1| - 0.15 12.2 0.4 62 3.8 0.0 3.3 3 0 0 3 3 3 0 Annexin MttA_Hcf106 PF02416.16 gi|352683219|ref|YP_004893743.1| - 6.4e-17 60.6 1.7 9.2e-15 53.7 0.3 2.3 1 1 1 2 2 2 2 mttA/Hcf106 family Hom_end PF05204.14 gi|352683219|ref|YP_004893743.1| - 0.0064 16.6 0.2 0.0076 16.4 0.2 1.2 1 0 0 1 1 1 1 Homing endonuclease UPF0180 PF03698.13 gi|352683219|ref|YP_004893743.1| - 0.016 15.4 0.1 0.022 14.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) DUF2465 PF10239.9 gi|352683219|ref|YP_004893743.1| - 0.021 14.1 0.3 0.024 13.9 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2465) Rho_N PF07498.12 gi|352683219|ref|YP_004893743.1| - 0.03 14.2 0.7 0.079 12.9 0.9 1.6 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain NTP_transf_3 PF12804.7 gi|352683220|ref|YP_004893744.1| - 8.1e-25 88.0 0.0 1.1e-24 87.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain LysE PF01810.18 gi|352683221|ref|YP_004893745.1| - 3.1e-15 56.1 16.5 3.7e-15 55.9 16.5 1.1 1 0 0 1 1 1 1 LysE type translocator Phage_holin_3_6 PF07332.11 gi|352683221|ref|YP_004893745.1| - 0.0018 18.3 2.2 0.0018 18.3 2.2 2.6 2 1 0 2 2 2 1 Putative Actinobacterial Holin-X, holin superfamily III DUF5305 PF17231.2 gi|352683221|ref|YP_004893745.1| - 0.077 12.4 0.1 0.077 12.4 0.1 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF5305) Metallophos_2 PF12850.7 gi|352683222|ref|YP_004893746.1| - 1e-28 100.6 0.0 1.3e-28 100.3 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|352683222|ref|YP_004893746.1| - 1.1e-06 29.3 0.7 0.00014 22.4 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|352683222|ref|YP_004893746.1| - 0.015 14.6 0.1 0.037 13.4 0.0 1.6 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily tRNA-synt_2 PF00152.20 gi|352683223|ref|YP_004893747.1| - 7e-75 252.0 0.0 1.5e-74 250.9 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|352683223|ref|YP_004893747.1| - 3e-09 36.7 0.0 7.2e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|352683223|ref|YP_004893747.1| - 1.6e-05 24.5 0.0 0.073 12.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Glyco_tranf_2_3 PF13641.6 gi|352683224|ref|YP_004893748.1| - 7.9e-15 55.4 0.0 1.2e-14 54.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|352683224|ref|YP_004893748.1| - 1.4e-11 44.6 0.0 1.9e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|352683224|ref|YP_004893748.1| - 9.2e-10 38.3 0.0 1.9e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|352683224|ref|YP_004893748.1| - 1.1e-09 38.5 18.9 2.8e-08 33.9 18.9 2.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|352683224|ref|YP_004893748.1| - 0.004 16.7 0.0 0.01 15.4 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 PGM_PMM_I PF02878.16 gi|352683225|ref|YP_004893749.1| - 1.1e-27 96.4 0.0 1.8e-27 95.7 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|352683225|ref|YP_004893749.1| - 5.8e-19 68.4 0.0 8.9e-19 67.8 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|352683225|ref|YP_004893749.1| - 2.6e-18 66.6 0.0 6.9e-18 65.2 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|352683225|ref|YP_004893749.1| - 1.5e-10 41.1 0.1 4.7e-10 39.5 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Frankia_peptide PF14407.6 gi|352683225|ref|YP_004893749.1| - 0.032 14.2 0.0 0.14 12.1 0.0 2.2 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. DUF763 PF05559.11 gi|352683226|ref|YP_004893750.1| - 3.7e-121 404.1 0.0 4.4e-121 403.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Acetyltransf_1 PF00583.25 gi|352683227|ref|YP_004893751.1| - 6.3e-15 55.4 0.1 7.8e-15 55.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|352683227|ref|YP_004893751.1| - 2.5e-09 37.4 0.1 3.9e-09 36.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|352683227|ref|YP_004893751.1| - 1.4e-07 31.4 0.1 2.3e-07 30.7 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|352683227|ref|YP_004893751.1| - 2e-07 31.0 0.1 3.7e-07 30.1 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|352683227|ref|YP_004893751.1| - 4.3e-07 30.1 0.2 8.3e-07 29.1 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|352683227|ref|YP_004893751.1| - 0.00023 20.8 0.0 0.00034 20.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|352683227|ref|YP_004893751.1| - 0.00055 20.6 0.4 0.0014 19.3 0.4 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|352683227|ref|YP_004893751.1| - 0.001 19.2 0.1 0.0024 18.0 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PhosphMutase PF10143.9 gi|352683228|ref|YP_004893752.1| - 2.4e-53 180.5 0.0 6.7e-53 179.0 0.0 1.7 2 0 0 2 2 2 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|352683228|ref|YP_004893752.1| - 7.1e-34 117.3 0.0 8.5e-34 117.0 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|352683228|ref|YP_004893752.1| - 0.00024 20.2 0.1 0.0014 17.7 0.1 1.8 1 1 0 1 1 1 1 Alkaline phosphatase Phosphodiest PF01663.22 gi|352683228|ref|YP_004893752.1| - 0.0037 16.9 0.1 0.0084 15.7 0.1 1.5 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase CutA1 PF03091.15 gi|352683229|ref|YP_004893753.1| - 1.5e-37 127.4 0.6 1.7e-37 127.2 0.6 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein DUF2250 PF10007.9 gi|352683230|ref|YP_004893754.1| - 2.8e-30 104.3 3.2 4.8e-30 103.5 3.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|352683230|ref|YP_004893754.1| - 7.5e-06 25.8 0.0 1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|352683230|ref|YP_004893754.1| - 0.00098 19.6 0.3 0.0035 17.8 0.1 2.0 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|352683230|ref|YP_004893754.1| - 0.001 18.9 0.7 0.0047 16.8 0.1 2.3 1 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|352683230|ref|YP_004893754.1| - 0.0051 16.7 1.7 0.022 14.6 0.2 2.4 2 1 0 2 2 2 1 MarR family HTH_29 PF13551.6 gi|352683230|ref|YP_004893754.1| - 0.013 15.5 0.7 0.054 13.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn helix MarR PF01047.22 gi|352683230|ref|YP_004893754.1| - 0.021 14.7 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 MarR family GntR PF00392.21 gi|352683230|ref|YP_004893754.1| - 0.038 13.7 0.1 0.077 12.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF505 PF04458.12 gi|352683230|ref|YP_004893754.1| - 0.094 11.1 0.1 0.95 7.7 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF505) HTH_20 PF12840.7 gi|352683230|ref|YP_004893754.1| - 0.12 12.5 1.4 0.23 11.6 0.2 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain DUF1634 PF07843.11 gi|352683231|ref|YP_004893755.1| - 1.8e-30 105.0 8.5 2.2e-30 104.7 8.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) TctB PF07331.11 gi|352683231|ref|YP_004893755.1| - 0.12 12.7 7.2 0.17 12.2 7.2 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family TauE PF01925.19 gi|352683232|ref|YP_004893756.1| - 9.4e-42 143.2 28.8 1.2e-41 143.0 28.8 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MccV PF17508.2 gi|352683232|ref|YP_004893756.1| - 0.27 11.8 0.0 0.27 11.8 0.0 2.2 3 0 0 3 3 3 0 Microcin V bacteriocin MFS_1 PF07690.16 gi|352683232|ref|YP_004893756.1| - 1.4 7.8 35.1 12 4.7 35.1 2.1 1 1 0 1 1 1 0 Major Facilitator Superfamily HD PF01966.22 gi|352683233|ref|YP_004893757.1| - 0.00027 21.2 0.2 0.00053 20.2 0.2 1.5 1 0 0 1 1 1 1 HD domain OCD_Mu_crystall PF02423.15 gi|352683237|ref|YP_004893761.1| - 5.4e-33 114.3 0.6 8.7e-33 113.6 0.6 1.4 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|352683237|ref|YP_004893761.1| - 4.4e-06 26.8 0.1 7.5e-06 26.0 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|352683237|ref|YP_004893761.1| - 0.00076 20.0 1.7 0.00085 19.9 0.4 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent THF_DHG_CYH_C PF02882.19 gi|352683237|ref|YP_004893761.1| - 0.079 12.3 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Radical_SAM PF04055.21 gi|352683238|ref|YP_004893762.1| - 1.6e-13 51.3 0.0 1.1e-12 48.6 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Nre_N PF04894.12 gi|352683239|ref|YP_004893763.1| - 2.6e-87 293.1 0.0 3.3e-87 292.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|352683239|ref|YP_004893763.1| - 1.5e-17 63.5 0.6 2.5e-17 62.8 0.6 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal CARDB PF07705.11 gi|352683240|ref|YP_004893764.1| - 0.00022 21.4 0.3 0.0059 16.8 0.3 3.1 3 0 0 3 3 3 1 CARDB NPCBM_assoc PF10633.9 gi|352683240|ref|YP_004893764.1| - 0.00042 20.5 4.7 0.035 14.4 0.1 4.3 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Transglut_C PF00927.22 gi|352683240|ref|YP_004893764.1| - 0.0088 16.2 0.1 0.023 14.8 0.1 1.6 1 0 0 1 1 1 1 Transglutaminase family, C-terminal ig like domain ABC_tran PF00005.27 gi|352683241|ref|YP_004893765.1| - 1.1e-30 107.0 0.0 1.3e-30 106.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|352683241|ref|YP_004893765.1| - 1.2e-09 38.5 0.5 0.00025 21.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|352683241|ref|YP_004893765.1| - 8.4e-05 22.1 0.0 0.32 10.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|352683241|ref|YP_004893765.1| - 0.00087 18.9 0.0 0.31 10.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|352683241|ref|YP_004893765.1| - 0.0014 19.2 0.1 0.0022 18.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352683241|ref|YP_004893765.1| - 0.0051 16.5 0.0 0.0092 15.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|352683241|ref|YP_004893765.1| - 0.012 15.9 1.6 0.33 11.2 0.4 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|352683241|ref|YP_004893765.1| - 0.018 14.8 0.2 0.043 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|352683241|ref|YP_004893765.1| - 0.019 15.2 0.1 0.52 10.6 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|352683241|ref|YP_004893765.1| - 0.023 14.9 0.6 0.15 12.2 0.6 2.0 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|352683241|ref|YP_004893765.1| - 0.032 13.0 0.9 0.55 9.0 0.5 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|352683241|ref|YP_004893765.1| - 0.055 13.9 0.1 0.093 13.1 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|352683241|ref|YP_004893765.1| - 0.077 13.2 0.0 0.47 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|352683241|ref|YP_004893765.1| - 0.087 12.7 0.2 0.19 11.7 0.2 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|352683241|ref|YP_004893765.1| - 0.14 11.8 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Rad17 PF03215.15 gi|352683241|ref|YP_004893765.1| - 0.14 12.0 0.0 0.4 10.6 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|352683241|ref|YP_004893765.1| - 0.15 12.0 0.3 0.31 10.9 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|352683241|ref|YP_004893765.1| - 0.15 12.6 0.0 0.29 11.7 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.6 gi|352683241|ref|YP_004893765.1| - 0.25 11.1 0.2 0.46 10.2 0.2 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|352683241|ref|YP_004893765.1| - 0.31 10.7 0.0 0.5 10.0 0.0 1.4 2 0 0 2 2 2 0 AAA ATPase domain ThiF PF00899.21 gi|352683242|ref|YP_004893766.1| - 2.9e-58 197.1 0.0 3.3e-58 196.9 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|352683242|ref|YP_004893766.1| - 0.022 15.0 0.5 0.12 12.6 0.5 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|352683242|ref|YP_004893766.1| - 0.1 12.5 0.1 0.17 11.8 0.1 1.5 1 1 0 1 1 1 0 KR domain ApbA PF02558.16 gi|352683242|ref|YP_004893766.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|352683242|ref|YP_004893766.1| - 0.16 11.3 0.2 0.7 9.2 0.1 1.9 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_36 PF13730.6 gi|352683243|ref|YP_004893767.1| - 4.8e-06 26.4 0.0 9.6e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|352683243|ref|YP_004893767.1| - 0.0031 17.4 0.1 0.012 15.5 0.1 1.9 1 0 0 1 1 1 1 MarR family TP_methylase PF00590.20 gi|352683243|ref|YP_004893767.1| - 0.0094 15.9 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Rrf2 PF02082.20 gi|352683243|ref|YP_004893767.1| - 0.035 14.5 0.0 0.083 13.3 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_34 PF13601.6 gi|352683243|ref|YP_004893767.1| - 0.054 13.7 0.0 0.13 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DprA_WH PF17782.1 gi|352683243|ref|YP_004893767.1| - 0.057 13.5 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 DprA winged helix domain HTH_Mga PF08280.11 gi|352683243|ref|YP_004893767.1| - 0.088 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MutS_II PF05188.17 gi|352683243|ref|YP_004893767.1| - 0.17 12.2 0.0 0.27 11.5 0.0 1.3 1 0 0 1 1 1 0 MutS domain II RPA_C PF08784.11 gi|352683243|ref|YP_004893767.1| - 0.17 12.5 0.0 0.28 11.9 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal eIF-5a PF01287.20 gi|352683244|ref|YP_004893768.1| - 9.2e-13 48.1 0.6 1.6e-12 47.4 0.6 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|352683244|ref|YP_004893768.1| - 3.3e-07 30.2 0.2 8.9e-07 28.8 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|352683244|ref|YP_004893768.1| - 0.0027 17.7 0.1 0.0055 16.7 0.1 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain DUF1947 PF09183.10 gi|352683244|ref|YP_004893768.1| - 0.055 13.8 0.2 1.2 9.5 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1947) DUF655 PF04919.12 gi|352683245|ref|YP_004893769.1| - 9.7e-55 185.3 0.2 1.1e-54 185.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|352683245|ref|YP_004893769.1| - 6.7e-06 26.3 0.1 6.9e-05 23.0 0.0 2.2 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|352683245|ref|YP_004893769.1| - 0.0008 19.6 0.1 0.022 15.0 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.16 gi|352683246|ref|YP_004893770.1| - 4e-11 43.3 2.4 4.6e-11 43.1 2.4 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 Pox_I6 PF04595.13 gi|352683246|ref|YP_004893770.1| - 0.049 12.6 0.1 0.056 12.4 0.1 1.1 1 0 0 1 1 1 0 Poxvirus I6-like family MerR_1 PF13411.6 gi|352683246|ref|YP_004893770.1| - 0.049 13.7 0.2 0.44 10.7 0.1 2.2 2 0 0 2 2 2 0 MerR HTH family regulatory protein V-ATPase_H_N PF03224.14 gi|352683246|ref|YP_004893770.1| - 0.059 12.7 1.3 0.085 12.1 0.5 1.6 1 1 0 1 1 1 0 V-ATPase subunit H Pox_A3L PF05288.11 gi|352683246|ref|YP_004893770.1| - 0.19 11.7 1.8 2.3 8.3 0.5 2.3 2 1 0 2 2 2 0 Poxvirus A3L Protein Ribosomal_L21e PF01157.18 gi|352683247|ref|YP_004893771.1| - 1.5e-29 101.8 0.2 1.7e-29 101.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e ATP_bind_1 PF03029.17 gi|352683248|ref|YP_004893772.1| - 1.5e-56 191.9 0.0 1.7e-56 191.7 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|352683248|ref|YP_004893772.1| - 1.1e-08 34.4 0.0 7.1e-06 25.2 0.0 2.3 2 0 0 2 2 2 2 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|352683248|ref|YP_004893772.1| - 2.6e-08 33.7 0.0 2.9e-07 30.2 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain CbiA PF01656.23 gi|352683248|ref|YP_004893772.1| - 2.1e-05 24.5 0.0 2.8e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CLP1_P PF16575.5 gi|352683248|ref|YP_004893772.1| - 4.5e-05 23.3 0.0 0.00034 20.5 0.0 2.1 2 1 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_16 PF13191.6 gi|352683248|ref|YP_004893772.1| - 0.00038 20.9 0.0 0.00074 19.9 0.0 1.7 1 1 1 2 2 2 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|352683248|ref|YP_004893772.1| - 0.0004 20.5 0.0 0.0042 17.1 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase ArsA_ATPase PF02374.15 gi|352683248|ref|YP_004893772.1| - 0.00045 19.5 0.0 0.00067 18.9 0.0 1.4 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_30 PF13604.6 gi|352683248|ref|YP_004893772.1| - 0.00046 19.9 0.0 0.0013 18.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|352683248|ref|YP_004893772.1| - 0.0005 20.0 0.0 0.22 11.4 0.0 2.9 3 0 0 3 3 3 1 RsgA GTPase SRP54 PF00448.22 gi|352683248|ref|YP_004893772.1| - 0.00084 19.0 0.0 0.0087 15.7 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain cobW PF02492.19 gi|352683248|ref|YP_004893772.1| - 0.001 18.7 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|352683248|ref|YP_004893772.1| - 0.0013 18.6 0.0 0.0045 16.9 0.0 1.9 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|352683248|ref|YP_004893772.1| - 0.003 17.8 0.0 0.015 15.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|352683248|ref|YP_004893772.1| - 0.0036 17.8 0.0 0.006 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|352683248|ref|YP_004893772.1| - 0.0043 16.8 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|352683248|ref|YP_004893772.1| - 0.0061 17.1 0.0 0.0098 16.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_33 PF13671.6 gi|352683248|ref|YP_004893772.1| - 0.0077 16.4 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|352683248|ref|YP_004893772.1| - 0.011 15.9 0.0 0.017 15.2 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain NTPase_1 PF03266.15 gi|352683248|ref|YP_004893772.1| - 0.012 15.5 0.0 0.29 11.0 0.0 2.4 2 1 0 2 2 2 0 NTPase AAA_7 PF12775.7 gi|352683248|ref|YP_004893772.1| - 0.013 15.0 0.0 0.021 14.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|352683248|ref|YP_004893772.1| - 0.014 15.6 0.0 0.037 14.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|352683248|ref|YP_004893772.1| - 0.017 14.1 0.0 0.031 13.2 0.0 1.4 2 0 0 2 2 1 0 Type IV secretion-system coupling protein DNA-binding domain APS_kinase PF01583.20 gi|352683248|ref|YP_004893772.1| - 0.02 14.8 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase PduV-EutP PF10662.9 gi|352683248|ref|YP_004893772.1| - 0.023 14.5 0.2 1.9 8.2 0.0 3.4 1 1 3 4 4 4 0 Ethanolamine utilisation - propanediol utilisation DUF815 PF05673.13 gi|352683248|ref|YP_004893772.1| - 0.032 13.4 0.0 0.046 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|352683248|ref|YP_004893772.1| - 0.04 13.2 0.0 0.056 12.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin Ploopntkinase3 PF18751.1 gi|352683248|ref|YP_004893772.1| - 0.049 13.5 0.0 0.088 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 KTI12 PF08433.10 gi|352683248|ref|YP_004893772.1| - 0.052 13.0 0.0 0.077 12.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|352683248|ref|YP_004893772.1| - 0.053 12.7 0.0 0.077 12.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PIF1 PF05970.14 gi|352683248|ref|YP_004893772.1| - 0.062 12.5 0.1 0.7 9.0 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase Thymidylate_kin PF02223.17 gi|352683248|ref|YP_004893772.1| - 0.092 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase AAA_24 PF13479.6 gi|352683248|ref|YP_004893772.1| - 0.093 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|352683248|ref|YP_004893772.1| - 0.1 11.5 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain T2SSE PF00437.20 gi|352683248|ref|YP_004893772.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1_Xtn PF16897.5 gi|352683248|ref|YP_004893772.1| - 0.13 12.3 0.0 2 8.5 0.0 2.5 2 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain AAA_31 PF13614.6 gi|352683248|ref|YP_004893772.1| - 0.15 12.0 0.0 0.32 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|352683248|ref|YP_004893772.1| - 0.16 11.3 0.0 1.5 8.1 0.0 2.0 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region NACHT PF05729.12 gi|352683248|ref|YP_004893772.1| - 0.16 11.8 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SRP19 PF01922.17 gi|352683249|ref|YP_004893773.1| - 1.2e-14 55.0 0.1 1.8e-14 54.4 0.1 1.3 1 1 0 1 1 1 1 SRP19 protein DUF2194 PF09960.9 gi|352683249|ref|YP_004893773.1| - 0.052 11.9 0.0 0.052 11.9 0.0 1.0 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2194) Ribosomal_S8e PF01201.22 gi|352683250|ref|YP_004893774.1| - 1.8e-27 96.2 1.4 2.2e-27 95.9 1.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e TF_Zn_Ribbon PF08271.12 gi|352683251|ref|YP_004893775.1| - 6.4e-13 48.0 1.4 1e-12 47.3 1.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|352683251|ref|YP_004893775.1| - 1.2e-09 38.1 1.4 1.8e-06 27.9 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat Prim_Zn_Ribbon PF08273.12 gi|352683251|ref|YP_004893775.1| - 0.0012 19.0 0.1 0.002 18.4 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|352683251|ref|YP_004893775.1| - 0.0057 16.0 2.2 0.067 12.6 2.3 2.1 1 1 0 1 1 1 1 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|352683251|ref|YP_004893775.1| - 0.0072 16.2 0.4 0.018 14.9 0.2 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|352683251|ref|YP_004893775.1| - 0.015 15.2 1.5 0.034 14.1 1.5 1.6 1 0 0 1 1 1 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|352683251|ref|YP_004893775.1| - 0.017 14.8 0.2 2.7 7.8 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|352683251|ref|YP_004893775.1| - 0.035 14.5 0.3 0.062 13.7 0.3 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar Elf1 PF05129.13 gi|352683251|ref|YP_004893775.1| - 0.11 12.5 0.1 0.23 11.5 0.1 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-RRN7 PF11781.8 gi|352683251|ref|YP_004893775.1| - 0.15 11.8 2.7 0.79 9.5 2.7 2.0 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Vps36-NZF-N PF16988.5 gi|352683251|ref|YP_004893775.1| - 0.15 11.5 0.5 0.31 10.5 0.5 1.4 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain DZR PF12773.7 gi|352683251|ref|YP_004893775.1| - 0.17 11.9 0.2 0.37 10.9 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon Trm112p PF03966.16 gi|352683251|ref|YP_004893775.1| - 0.21 12.2 0.8 12 6.6 0.8 2.6 1 1 0 1 1 1 0 Trm112p-like protein zf-NADH-PPase PF09297.11 gi|352683251|ref|YP_004893775.1| - 0.23 11.1 0.3 0.53 10.0 0.3 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|352683251|ref|YP_004893775.1| - 0.34 10.9 1.4 0.77 9.7 1.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|352683251|ref|YP_004893775.1| - 0.35 10.7 1.5 19 5.1 1.5 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain Prok-RING_1 PF14446.6 gi|352683251|ref|YP_004893775.1| - 2.3 8.2 5.0 6.2 6.8 5.0 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Gar1 PF04410.14 gi|352683252|ref|YP_004893776.1| - 0.00034 20.4 0.0 0.00035 20.4 0.0 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region HTH_27 PF13463.6 gi|352683253|ref|YP_004893777.1| - 7e-05 23.2 0.0 0.00011 22.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|352683253|ref|YP_004893777.1| - 8.5e-05 22.4 0.1 0.00025 20.9 0.0 1.8 2 0 0 2 2 2 1 MarR family B-block_TFIIIC PF04182.12 gi|352683253|ref|YP_004893777.1| - 0.005 17.0 0.1 0.0069 16.5 0.1 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF2250 PF10007.9 gi|352683253|ref|YP_004893777.1| - 0.0056 16.8 0.1 0.0095 16.0 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.14 gi|352683253|ref|YP_004893777.1| - 0.02 14.8 0.2 0.044 13.8 0.2 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|352683253|ref|YP_004893777.1| - 0.091 12.7 0.3 0.4 10.6 0.0 2.0 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB PaaX PF07848.12 gi|352683253|ref|YP_004893777.1| - 0.13 12.5 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 PaaX-like protein Replic_Relax PF13814.6 gi|352683253|ref|YP_004893777.1| - 0.17 11.9 0.1 0.23 11.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_micro PF17007.5 gi|352683253|ref|YP_004893777.1| - 0.2 10.4 0.0 0.23 10.2 0.0 1.1 1 0 0 1 1 1 0 HTH-like LigT_PEase PF02834.16 gi|352683254|ref|YP_004893778.1| - 4.1e-27 94.2 0.9 1.8e-16 60.1 0.1 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|352683254|ref|YP_004893778.1| - 7.2e-16 58.5 0.0 1e-15 58.0 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|352683254|ref|YP_004893778.1| - 3.8e-10 40.0 0.0 7e-10 39.1 0.0 1.3 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|352683254|ref|YP_004893778.1| - 0.00012 21.7 0.0 0.00014 21.4 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein tRNA_NucTransf2 PF09249.11 gi|352683255|ref|YP_004893779.1| - 1.7e-43 147.5 0.0 2.6e-43 146.9 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|352683255|ref|YP_004893779.1| - 2.8e-11 43.6 0.0 6.1e-11 42.5 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|352683255|ref|YP_004893779.1| - 0.0039 17.4 0.0 0.0069 16.6 0.0 1.4 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain DUF465 PF04325.13 gi|352683256|ref|YP_004893780.1| - 0.042 13.9 0.2 0.077 13.0 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF465) GP3_package PF16677.5 gi|352683256|ref|YP_004893780.1| - 0.082 13.0 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 DNA-packaging protein gp3 GPS2_interact PF15784.5 gi|352683256|ref|YP_004893780.1| - 0.14 12.6 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain DUF349 PF03993.12 gi|352683256|ref|YP_004893780.1| - 0.15 12.4 0.1 0.23 11.8 0.1 1.2 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) APG6_N PF17675.1 gi|352683256|ref|YP_004893780.1| - 0.17 12.4 0.3 0.25 11.9 0.3 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region DUF89 PF01937.19 gi|352683257|ref|YP_004893781.1| - 3.1e-14 52.7 0.0 7.8e-12 44.8 0.0 2.4 2 1 0 2 2 2 2 Protein of unknown function DUF89 RAP1 PF07218.11 gi|352683257|ref|YP_004893781.1| - 0.015 13.6 0.0 0.019 13.3 0.0 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Aminotran_5 PF00266.19 gi|352683258|ref|YP_004893782.1| - 4.2e-24 85.2 0.0 5e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|352683258|ref|YP_004893782.1| - 8e-07 27.9 0.0 1.2e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|352683258|ref|YP_004893782.1| - 0.0014 17.8 0.0 0.024 13.8 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II SHMT PF00464.19 gi|352683258|ref|YP_004893782.1| - 0.044 12.4 0.0 0.057 12.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase 2-Hacid_dh_C PF02826.19 gi|352683259|ref|YP_004893783.1| - 2.1e-51 173.8 0.0 2.9e-51 173.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|352683259|ref|YP_004893783.1| - 3.3e-31 107.7 0.0 4.1e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|352683259|ref|YP_004893783.1| - 4.8e-05 23.5 0.0 9.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|352683259|ref|YP_004893783.1| - 0.00051 20.2 0.0 0.0016 18.6 0.0 1.8 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|352683259|ref|YP_004893783.1| - 0.0052 17.3 0.1 0.016 15.8 0.1 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|352683259|ref|YP_004893783.1| - 0.0098 15.8 0.2 0.026 14.4 0.2 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|352683259|ref|YP_004893783.1| - 0.013 15.1 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Gp_dh_N PF00044.24 gi|352683259|ref|YP_004893783.1| - 0.087 13.2 0.1 0.19 12.1 0.1 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CBS PF00571.28 gi|352683260|ref|YP_004893784.1| - 4.3e-32 110.3 3.8 2.5e-17 63.1 0.6 3.4 3 0 0 3 3 3 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|352683260|ref|YP_004893784.1| - 3.4e-31 106.7 0.2 7e-31 105.7 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|352683260|ref|YP_004893784.1| - 8e-12 45.4 0.0 2.3e-11 43.9 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|352683260|ref|YP_004893784.1| - 5e-06 26.4 0.0 1.9e-05 24.5 0.0 2.1 1 0 0 1 1 1 1 HTH domain IF3_N PF05198.16 gi|352683260|ref|YP_004893784.1| - 0.0041 17.4 0.3 4 7.8 0.0 3.7 4 0 0 4 4 4 1 Translation initiation factor IF-3, N-terminal domain TrmB PF01978.19 gi|352683260|ref|YP_004893784.1| - 0.0045 16.8 1.2 0.054 13.4 0.8 3.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.11 gi|352683260|ref|YP_004893784.1| - 0.0066 16.6 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal MarR_2 PF12802.7 gi|352683260|ref|YP_004893784.1| - 0.0075 16.1 0.0 0.021 14.7 0.0 1.8 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|352683260|ref|YP_004893784.1| - 0.009 16.2 0.4 0.023 14.9 0.4 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|352683260|ref|YP_004893784.1| - 0.049 13.4 0.0 10 6.0 0.0 2.8 2 1 1 3 3 3 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|352683260|ref|YP_004893784.1| - 0.11 12.3 0.1 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family E2F_TDP PF02319.20 gi|352683260|ref|YP_004893784.1| - 0.12 12.4 0.1 0.46 10.6 0.0 1.9 2 0 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain PfkB PF00294.24 gi|352683261|ref|YP_004893785.1| - 5.5e-12 45.6 0.0 1.7e-08 34.2 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Cys_Met_Meta_PP PF01053.20 gi|352683262|ref|YP_004893786.1| - 1.6e-118 395.6 0.0 1.8e-118 395.4 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|352683262|ref|YP_004893786.1| - 0.00065 18.8 0.0 0.00081 18.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|352683262|ref|YP_004893786.1| - 0.0032 16.1 0.0 0.0049 15.4 0.0 1.3 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_1_2 PF00155.21 gi|352683262|ref|YP_004893786.1| - 0.008 15.4 0.0 0.018 14.2 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|352683262|ref|YP_004893786.1| - 0.019 14.3 0.1 0.031 13.6 0.1 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Ribosomal_S4e PF00900.20 gi|352683264|ref|YP_004893788.1| - 1.1e-19 70.1 0.0 1.8e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.25 gi|352683264|ref|YP_004893788.1| - 4.1e-10 39.2 0.1 9.3e-10 38.1 0.1 1.6 1 0 0 1 1 1 1 S4 domain RS4NT PF08071.12 gi|352683264|ref|YP_004893788.1| - 5.6e-10 39.2 5.3 5.6e-10 39.2 5.3 1.9 2 0 0 2 2 2 1 RS4NT (NUC023) domain PMP1_2 PF08114.11 gi|352683265|ref|YP_004893789.1| - 0.3 10.8 3.8 0.54 10.1 0.1 2.2 2 0 0 2 2 2 0 ATPase proteolipid family PLDc_2 PF13091.6 gi|352683266|ref|YP_004893790.1| - 1.3e-10 41.2 0.0 1.1e-09 38.3 0.0 2.0 1 1 0 1 1 1 1 PLD-like domain PLDc PF00614.22 gi|352683266|ref|YP_004893790.1| - 0.014 15.5 0.6 0.052 13.8 0.1 2.1 2 0 0 2 2 2 0 Phospholipase D Active site motif HR1 PF02185.16 gi|352683266|ref|YP_004893790.1| - 0.019 15.1 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Hr1 repeat LapA_dom PF06305.11 gi|352683266|ref|YP_004893790.1| - 0.063 13.1 2.1 0.2 11.5 0.1 2.3 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain DUF2207 PF09972.9 gi|352683266|ref|YP_004893790.1| - 0.083 11.6 0.1 0.1 11.3 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Phage_holin_3_6 PF07332.11 gi|352683266|ref|YP_004893790.1| - 0.45 10.6 4.0 1.4 9.0 4.0 1.8 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2201_N PF13203.6 gi|352683267|ref|YP_004893791.1| - 7.1e-16 58.6 1.6 1.9e-15 57.2 1.6 1.6 1 1 0 1 1 1 1 Putative metallopeptidase domain DUF2201 PF09967.9 gi|352683267|ref|YP_004893791.1| - 8.7e-10 38.8 0.0 9.1e-09 35.5 0.0 2.1 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.14 gi|352683267|ref|YP_004893791.1| - 0.00011 21.7 0.1 0.00039 19.9 0.1 1.9 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|352683267|ref|YP_004893791.1| - 0.0016 18.7 0.0 0.0033 17.7 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|352683267|ref|YP_004893791.1| - 0.0048 17.5 0.0 0.025 15.2 0.0 2.1 2 1 0 2 2 2 1 von Willebrand factor type A domain Integrin_beta PF00362.18 gi|352683267|ref|YP_004893791.1| - 0.097 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Integrin beta chain VWA domain AAA_16 PF13191.6 gi|352683269|ref|YP_004893793.1| - 0.00035 21.0 0.0 0.0016 18.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.6 gi|352683269|ref|YP_004893793.1| - 0.004 17.5 0.0 0.037 14.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|352683269|ref|YP_004893793.1| - 0.02 14.9 0.0 0.065 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|352683269|ref|YP_004893793.1| - 0.023 15.1 0.0 0.12 12.8 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|352683269|ref|YP_004893793.1| - 0.026 14.3 0.0 0.35 10.6 0.0 2.1 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|352683269|ref|YP_004893793.1| - 0.079 13.2 0.0 0.24 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|352683269|ref|YP_004893793.1| - 0.085 12.9 0.0 1.1 9.3 0.0 2.1 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|352683269|ref|YP_004893793.1| - 0.1 11.9 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|352683269|ref|YP_004893793.1| - 0.1 11.9 0.0 0.22 10.8 0.0 1.5 2 0 0 2 2 2 0 KaiC AAA_7 PF12775.7 gi|352683269|ref|YP_004893793.1| - 0.12 11.9 0.0 0.27 10.7 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region TniB PF05621.11 gi|352683269|ref|YP_004893793.1| - 0.2 11.0 0.0 0.47 9.8 0.0 1.5 2 0 0 2 2 2 0 Bacterial TniB protein CPBP PF02517.16 gi|352683272|ref|YP_004893796.1| - 1.9e-10 40.9 11.5 8.8e-10 38.8 11.5 2.1 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease DUF3792 PF12670.7 gi|352683272|ref|YP_004893796.1| - 2.3 8.4 15.1 0.098 12.8 1.6 2.7 2 2 0 2 2 2 0 Protein of unknown function (DUF3792) LDcluster4 PF18306.1 gi|352683273|ref|YP_004893797.1| - 5.9e-17 61.7 0.0 7e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family LSDAT_prok PF18171.1 gi|352683273|ref|YP_004893797.1| - 9.7e-06 25.0 0.0 6.6e-05 22.2 0.0 1.9 2 0 0 2 2 2 1 SLOG in TRPM, prokaryote Nuc_deoxyrib_tr PF05014.15 gi|352683273|ref|YP_004893797.1| - 0.0053 16.8 0.0 0.011 15.8 0.0 1.7 2 0 0 2 2 2 1 Nucleoside 2-deoxyribosyltransferase LD_cluster2 PF18163.1 gi|352683273|ref|YP_004893797.1| - 0.0061 16.1 0.0 0.042 13.4 0.0 2.0 1 1 1 2 2 2 1 SLOG cluster2 Lysine_decarbox PF03641.14 gi|352683273|ref|YP_004893797.1| - 0.065 13.3 0.1 0.44 10.6 0.1 2.1 1 1 0 2 2 2 0 Possible lysine decarboxylase MoCF_biosynth PF00994.24 gi|352683274|ref|YP_004893798.1| - 4.4e-31 107.5 0.3 5.1e-31 107.3 0.3 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain PhoU PF01895.19 gi|352683275|ref|YP_004893799.1| - 1.5e-06 28.6 0.2 1.5e-06 28.6 0.2 2.2 2 1 0 2 2 2 1 PhoU domain Phage_connect_1 PF05135.13 gi|352683276|ref|YP_004893800.1| - 0.018 15.5 0.2 0.027 14.9 0.1 1.4 1 1 0 1 1 1 0 Phage gp6-like head-tail connector protein CBS PF00571.28 gi|352683277|ref|YP_004893801.1| - 3.1e-27 94.8 3.3 1e-12 48.3 0.2 2.1 2 0 0 2 2 2 2 CBS domain DUF2786 PF10979.8 gi|352683277|ref|YP_004893801.1| - 7.9e-05 22.5 0.2 0.043 13.7 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2786) NAD_binding_10 PF13460.6 gi|352683277|ref|YP_004893801.1| - 0.026 14.4 0.3 0.03 14.2 0.3 1.1 1 0 0 1 1 1 0 NAD(P)H-binding GGDEF_2 PF17853.1 gi|352683277|ref|YP_004893801.1| - 0.038 14.2 0.1 0.064 13.5 0.1 1.5 1 1 0 1 1 1 0 GGDEF-like domain OrfB_Zn_ribbon PF07282.11 gi|352683278|ref|YP_004893802.1| - 2e-09 37.2 0.0 4.3e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|352683278|ref|YP_004893802.1| - 0.0018 17.9 1.4 0.0031 17.2 1.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|352683278|ref|YP_004893802.1| - 0.0021 17.6 3.1 0.0042 16.7 3.1 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|352683278|ref|YP_004893802.1| - 0.012 15.0 2.2 0.41 10.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_IS605 PF01385.19 gi|352683278|ref|YP_004893802.1| - 0.013 15.7 1.7 0.042 14.1 1.7 1.9 1 0 0 1 1 1 0 Probable transposase DZR PF12773.7 gi|352683278|ref|YP_004893802.1| - 0.027 14.5 0.4 0.046 13.8 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|352683278|ref|YP_004893802.1| - 0.031 14.4 1.3 0.058 13.5 1.3 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.12 gi|352683278|ref|YP_004893802.1| - 0.036 13.6 1.0 1.1 8.8 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|352683278|ref|YP_004893802.1| - 0.044 13.8 2.2 0.11 12.5 2.2 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|352683278|ref|YP_004893802.1| - 0.047 12.5 0.0 0.077 11.8 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Prok-RING_1 PF14446.6 gi|352683278|ref|YP_004893802.1| - 0.047 13.6 0.8 0.088 12.7 0.8 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 C1_1 PF00130.22 gi|352683278|ref|YP_004893802.1| - 0.065 13.1 0.9 0.11 12.3 0.9 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.13 gi|352683278|ref|YP_004893802.1| - 0.14 11.9 2.7 0.31 10.8 2.7 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Cys_rich_CPCC PF14206.6 gi|352683278|ref|YP_004893802.1| - 0.19 11.6 0.4 0.35 10.7 0.4 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC Auto_anti-p27 PF06677.12 gi|352683278|ref|YP_004893802.1| - 0.22 11.7 2.5 0.38 11.0 2.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ogr_Delta PF04606.12 gi|352683278|ref|YP_004893802.1| - 0.48 10.4 3.8 0.5 10.4 0.3 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger Zn-ribbon_8 PF09723.10 gi|352683278|ref|YP_004893802.1| - 0.54 10.4 3.7 2.8 8.1 3.6 2.1 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|352683278|ref|YP_004893802.1| - 0.57 10.3 2.5 23 5.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YhfH PF14149.6 gi|352683278|ref|YP_004893802.1| - 1.4 9.0 3.7 0.62 10.1 0.3 2.1 2 0 0 2 2 2 0 YhfH-like protein DNA_ligase_ZBD PF03119.16 gi|352683278|ref|YP_004893802.1| - 9.9 6.3 7.0 14 5.8 2.5 2.8 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3667 PF12412.8 gi|352683279|ref|YP_004893803.1| - 0.37 10.3 4.4 0.45 10.1 2.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3667) Arch_flagellin PF01917.16 gi|352683280|ref|YP_004893804.1| - 0.0074 16.5 2.0 0.0084 16.3 2.0 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin RCR PF12273.8 gi|352683280|ref|YP_004893804.1| - 0.15 12.7 0.4 0.18 12.5 0.4 1.1 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red CAP PF00188.26 gi|352683282|ref|YP_004893806.1| - 3e-05 24.8 0.3 0.00011 23.1 0.3 1.9 1 1 0 1 1 1 1 Cysteine-rich secretory protein family CBM_48 PF02922.18 gi|352683282|ref|YP_004893806.1| - 0.092 13.1 0.1 0.26 11.7 0.1 1.7 1 0 0 1 1 1 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Period_C PF12114.8 gi|352683283|ref|YP_004893807.1| - 0.17 11.5 3.6 0.31 10.6 3.6 1.4 1 0 0 1 1 1 0 Period protein 2/3C-terminal region # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_tenax_Kra_1_uid74443/NC_016070.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_tenax_Kra_1_uid74443/NC_016070.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_tenax_Kra_1_uid74443/NC_016070.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Thermoproteus_tenax_Kra_1_uid74443/NC_016070.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:06:42 2019 # [ok]