#Protein	Length	Domain	Domain_description	score	bias	c-Evalue	i-Evalue	hmmfrom	hmmto	alifrom	alito	envfrom 	envto	acc
gi|119709758|ref|YP_919098.1|	555	DUF3391	Domain	5.9	2.3	0.00095	17	71	126	38	98	16	105	0.61
gi|119709758|ref|YP_919098.1|	555	DUF3391	Domain	4.1	0.2	0.0035	63	37	94	134	191	132	229	0.71
gi|119709760|ref|YP_919100.1|	314	CPBP	CPBP	-7.0	10.8	1	1.8e+04	61	83	15	36	5	146	0.75
gi|119709760|ref|YP_919100.1|	314	CPBP	CPBP	25.0	9.6	1e-09	1.8e-05	6	91	176	266	172	267	0.74
gi|119709760|ref|YP_919100.1|	314	CPBP	CPBP	-3.2	0.1	0.65	1.2e+04	67	73	284	290	268	296	0.52
gi|119709765|ref|YP_919105.1|	128	DUF1421	UBA-like	12.4	0.0	6e-06	0.11	6	27	68	89	63	96	0.85
gi|119709767|ref|YP_919107.1|	77	zf-RRN7	Zinc-finger	15.7	6.6	1e-06	0.009	3	30	15	43	13	45	0.91
gi|119709767|ref|YP_919107.1|	77	Zn_Tnp_IS1595	Transposase	11.7	7.3	2.1e-05	0.19	18	44	16	41	3	43	0.81
gi|119709768|ref|YP_919108.1|	118	DotD	DotD	11.5	0.0	1.2e-05	0.21	19	62	8	50	2	56	0.87
gi|119709770|ref|YP_919110.1|	257	RHH_1	Ribbon-helix-helix	15.0	0.1	1.2e-05	0.017	9	38	20	49	13	50	0.86
gi|119709770|ref|YP_919110.1|	257	RHH_3	Ribbon-helix-helix	14.9	0.2	1.4e-05	0.019	11	38	19	46	16	49	0.90
gi|119709770|ref|YP_919110.1|	257	RHH_3	Ribbon-helix-helix	-0.3	0.0	0.81	1.1e+03	8	24	158	174	152	175	0.69
gi|119709770|ref|YP_919110.1|	257	GAS	Growth-arrest	-1.3	0.1	0.83	1.1e+03	82	122	24	64	9	78	0.57
gi|119709770|ref|YP_919110.1|	257	GAS	Growth-arrest	15.1	0.6	7.8e-06	0.011	30	82	193	245	190	254	0.93
gi|119709770|ref|YP_919110.1|	257	RmuC	RmuC	-0.2	0.0	0.31	4.3e+02	240	268	87	115	68	129	0.85
gi|119709770|ref|YP_919110.1|	257	RmuC	RmuC	10.7	0.4	0.00015	0.21	23	70	203	250	191	253	0.87
gi|119709770|ref|YP_919110.1|	257	Phage_terminase	Phage	5.9	0.0	0.009	12	1	38	1	38	1	49	0.89
gi|119709770|ref|YP_919110.1|	257	Phage_terminase	Phage	6.1	0.2	0.0083	11	11	48	153	191	151	207	0.81
gi|119709770|ref|YP_919110.1|	257	CopG_antitoxin	CopG	12.8	0.1	9.3e-05	0.13	41	79	9	47	4	47	0.91
gi|119709770|ref|YP_919110.1|	257	LTXXQ	LTXXQ	12.4	3.6	0.00014	0.19	45	98	192	246	150	248	0.87
gi|119709770|ref|YP_919110.1|	257	SKA2	Spindle	11.7	0.1	0.00012	0.17	18	73	187	238	184	243	0.83
gi|119709770|ref|YP_919110.1|	257	YAcAr	YspA,	11.5	0.0	0.00016	0.22	9	52	87	130	78	137	0.83
gi|119709770|ref|YP_919110.1|	257	YAcAr	YspA,	-3.4	0.0	7	9.7e+03	16	28	214	226	205	229	0.71
gi|119709770|ref|YP_919110.1|	257	Surfac_D-trimer	Lung	11.2	0.0	0.00019	0.26	6	27	165	186	159	189	0.93
gi|119709770|ref|YP_919110.1|	257	PSK_trans_fac	Rv0623-like	13.8	0.7	5.4e-05	0.075	12	40	23	51	18	116	0.87
gi|119709770|ref|YP_919110.1|	257	PSK_trans_fac	Rv0623-like	-1.0	0.1	2.3	3.2e+03	41	54	163	176	152	205	0.53
gi|119709770|ref|YP_919110.1|	257	PSK_trans_fac	Rv0623-like	1.8	2.0	0.3	4.1e+02	43	77	207	242	192	246	0.70
gi|119709770|ref|YP_919110.1|	257	APG6_N	Apg6	0.4	0.1	0.64	8.8e+02	53	90	93	130	42	132	0.75
gi|119709770|ref|YP_919110.1|	257	APG6_N	Apg6	13.4	1.4	5.9e-05	0.082	25	85	152	241	151	249	0.84
gi|119709770|ref|YP_919110.1|	257	YabA	Initiation	-1.4	0.0	2.6	3.6e+03	15	44	30	49	18	74	0.47
gi|119709770|ref|YP_919110.1|	257	YabA	Initiation	0.8	0.0	0.57	7.8e+02	16	54	88	126	85	148	0.72
gi|119709770|ref|YP_919110.1|	257	YabA	Initiation	8.8	0.5	0.0018	2.5	16	57	204	245	192	256	0.78
gi|119709773|ref|YP_919113.1|	126	Sigma70_r3	Sigma-70	12.7	0.0	3.9e-05	0.1	2	42	12	50	11	59	0.84
gi|119709773|ref|YP_919113.1|	126	Sigma70_r3	Sigma-70	4.3	0.0	0.016	42	20	47	90	117	84	122	0.85
gi|119709773|ref|YP_919113.1|	126	HTH_24	Winged	16.5	0.0	1.7e-06	0.0045	12	46	23	57	17	58	0.84
gi|119709773|ref|YP_919113.1|	126	HTH_24	Winged	-2.2	0.0	1.2	3.2e+03	19	34	92	107	90	112	0.64
gi|119709773|ref|YP_919113.1|	126	HTH_38	Helix-turn-helix	15.8	0.0	3.5e-06	0.0089	7	32	14	40	13	43	0.90
gi|119709773|ref|YP_919113.1|	126	FaeA	FaeA-like	14.6	0.0	1.2e-05	0.032	6	47	21	60	15	64	0.79
gi|119709773|ref|YP_919113.1|	126	TrmB	Sugar-specific	11.6	0.0	7.6e-05	0.2	16	53	22	59	15	70	0.86
gi|119709773|ref|YP_919113.1|	126	MerR	MerR	9.5	0.2	0.00032	0.81	1	28	30	60	30	66	0.73
gi|119709773|ref|YP_919113.1|	126	YgbB	YgbB	11.3	0.0	0.00012	0.3	75	122	66	113	59	119	0.91
gi|119709774|ref|YP_919114.1|	150	DUF1771	Domain	18.2	0.1	2.7e-07	0.0024	14	46	66	98	55	100	0.90
gi|119709774|ref|YP_919114.1|	150	DOPA_dioxygen	Dopa	12.8	0.0	1.1e-05	0.098	1	55	65	118	65	124	0.90
gi|119709776|ref|YP_919116.1|	228	BatA	Aerotolerance	-0.5	0.6	0.36	1.6e+03	7	14	9	16	2	23	0.52
gi|119709776|ref|YP_919116.1|	228	BatA	Aerotolerance	14.1	0.3	9.9e-06	0.045	1	34	194	224	194	227	0.68
gi|119709776|ref|YP_919116.1|	228	Totivirus_coat	Totivirus	10.9	0.6	1.9e-05	0.086	660	727	107	171	100	181	0.85
gi|119709776|ref|YP_919116.1|	228	DUF4175	Domain	9.2	0.2	5.6e-05	0.25	175	227	23	77	17	140	0.82
gi|119709776|ref|YP_919116.1|	228	TGBp3	Triple	0.7	0.4	0.094	4.2e+02	4	19	6	21	4	28	0.72
gi|119709776|ref|YP_919116.1|	228	TGBp3	Triple	8.8	0.1	0.00028	1.2	1	31	199	227	198	227	0.75
gi|119709780|ref|YP_919120.1|	149	DUF641	Plant	14.2	0.2	9.2e-06	0.041	72	117	92	137	49	146	0.82
gi|119709780|ref|YP_919120.1|	149	HEPN-like_int	HEPN-like	13.4	0.0	1.1e-05	0.051	15	90	54	138	42	143	0.72
gi|119709780|ref|YP_919120.1|	149	APG6_N	Apg6	13.5	3.7	1.7e-05	0.076	56	107	93	144	61	147	0.79
gi|119709780|ref|YP_919120.1|	149	zf-ISL3	zinc-finger	13.0	0.2	2.7e-05	0.12	2	32	8	42	7	45	0.80
gi|119709782|ref|YP_919122.1|	98	PDEase_I_N	3'5'-cyclic	12.2	0.0	6.9e-06	0.12	15	33	5	23	3	30	0.85
gi|119709783|ref|YP_919123.1|	178	FUSC_2	Fusaric	13.1	7.1	4.3e-06	0.077	36	85	114	167	105	175	0.80
gi|119709785|ref|YP_919125.1|	66	zf-C5HC2	C5HC2	-1.5	0.0	0.37	3.4e+03	1	10	5	14	5	20	0.66
gi|119709785|ref|YP_919125.1|	66	zf-C5HC2	C5HC2	12.6	0.1	1.5e-05	0.14	7	37	28	59	26	66	0.80
gi|119709785|ref|YP_919125.1|	66	DUF1450	Protein	0.2	0.0	0.076	6.8e+02	40	47	5	12	3	21	0.82
gi|119709785|ref|YP_919125.1|	66	DUF1450	Protein	10.7	0.2	3.8e-05	0.34	39	66	28	55	26	64	0.83
gi|119709786|ref|YP_919126.1|	96	FUN14	FUN14	26.3	2.6	8.3e-10	7.5e-06	9	90	11	93	4	94	0.75
gi|119709786|ref|YP_919126.1|	96	SPC12	Microsomal	7.0	2.8	0.00069	6.2	19	53	5	38	2	43	0.84
gi|119709786|ref|YP_919126.1|	96	SPC12	Microsomal	3.8	0.0	0.007	63	6	29	66	90	64	93	0.80
gi|119709788|ref|YP_919128.1|	53	DUF3437	Domain	11.7	0.0	1.1e-05	0.19	47	72	25	50	5	52	0.86
gi|119709789|ref|YP_919129.1|	82	DUF3563	Protein	7.0	0.1	0.00054	4.8	17	35	3	21	1	24	0.86
gi|119709789|ref|YP_919129.1|	82	DUF3563	Protein	4.3	0.0	0.0037	33	27	51	39	63	36	69	0.86
gi|119709789|ref|YP_919129.1|	82	Ku_C	Ku70/Ku80	12.4	0.1	2.2e-05	0.2	14	62	31	79	30	81	0.88
gi|119709791|ref|YP_919131.1|	56	PSK_trans_fac	Rv0623-like	20.3	2.3	9.2e-07	0.00068	14	55	10	52	4	56	0.77
gi|119709791|ref|YP_919131.1|	56	RHH_1	Ribbon-helix-helix	18.4	3.9	2e-06	0.0015	9	38	5	34	2	35	0.91
gi|119709791|ref|YP_919131.1|	56	RHH_1	Ribbon-helix-helix	-1.7	0.0	4.3	3.2e+03	30	37	43	50	41	52	0.58
gi|119709791|ref|YP_919131.1|	56	ParE_toxin	ParE	18.9	0.9	2.3e-06	0.0017	6	58	5	54	2	56	0.78
gi|119709791|ref|YP_919131.1|	56	RAC_head	Ribosome-associated	17.8	0.9	6.7e-06	0.005	55	93	7	44	1	48	0.89
gi|119709791|ref|YP_919131.1|	56	ADSL_C	Adenylosuccinate	16.8	1.2	1e-05	0.0075	17	49	13	46	1	56	0.77
gi|119709791|ref|YP_919131.1|	56	TetR_C_11	Tetracyclin	16.2	0.1	1.3e-05	0.0095	11	58	10	55	5	56	0.88
gi|119709791|ref|YP_919131.1|	56	CPL	CPL	15.7	0.3	1.9e-05	0.014	45	86	11	52	7	56	0.89
gi|119709791|ref|YP_919131.1|	56	DnaI_N	Primosomal	15.9	0.2	2.1e-05	0.016	3	40	12	48	10	55	0.88
gi|119709791|ref|YP_919131.1|	56	DUF3818	Domain	14.1	0.5	2.4e-05	0.018	205	245	11	51	4	55	0.90
gi|119709791|ref|YP_919131.1|	56	Lipoprotein_16	Uncharacterized	14.2	0.2	3.5e-05	0.026	131	157	19	45	4	47	0.91
gi|119709791|ref|YP_919131.1|	56	GerD	Spore	13.9	0.3	5.2e-05	0.038	70	111	11	51	2	54	0.71
gi|119709791|ref|YP_919131.1|	56	PEP-utilisers_N	PEP-utilising	14.5	1.0	4.1e-05	0.03	43	83	6	50	3	54	0.79
gi|119709791|ref|YP_919131.1|	56	NEMO	NF-kappa-B	14.3	1.9	4.2e-05	0.032	8	51	7	51	2	55	0.82
gi|119709791|ref|YP_919131.1|	56	RPN7	26S	13.6	1.9	5.5e-05	0.041	13	43	7	37	2	38	0.91
gi|119709791|ref|YP_919131.1|	56	AAA_32	AAA	12.7	1.0	5.3e-05	0.04	195	247	7	55	3	56	0.59
gi|119709791|ref|YP_919131.1|	56	XH	XH	13.4	0.7	7.5e-05	0.056	65	91	8	34	6	49	0.88
gi|119709791|ref|YP_919131.1|	56	XH	XH	-1.5	0.0	2.9	2.2e+03	77	92	41	56	32	56	0.72
gi|119709791|ref|YP_919131.1|	56	T6SS_VipA	Type	13.4	2.0	6.5e-05	0.049	110	150	7	46	3	51	0.83
gi|119709791|ref|YP_919131.1|	56	DUF445	Protein	13.5	1.1	6.3e-05	0.047	191	236	6	51	1	55	0.80
gi|119709791|ref|YP_919131.1|	56	Sec3_C_2	Sec3	13.7	0.5	8.3e-05	0.062	17	55	12	50	2	54	0.52
gi|119709791|ref|YP_919131.1|	56	MethyTransf_Reg	Predicted	13.8	0.2	9.7e-05	0.073	39	73	17	51	8	55	0.85
gi|119709791|ref|YP_919131.1|	56	Taeniidae_ag	Taeniidae	11.8	1.5	0.00025	0.18	34	64	5	35	4	35	0.93
gi|119709791|ref|YP_919131.1|	56	Taeniidae_ag	Taeniidae	-0.5	0.0	1.6	1.2e+03	8	20	42	54	37	56	0.52
gi|119709791|ref|YP_919131.1|	56	RNase_J_C	Ribonuclease	13.8	0.3	0.00013	0.093	13	52	8	50	4	55	0.71
gi|119709791|ref|YP_919131.1|	56	COMP	Cartilage	13.0	2.2	0.00014	0.11	15	40	8	35	2	38	0.74
gi|119709791|ref|YP_919131.1|	56	COMP	Cartilage	-0.4	0.0	2.3	1.7e+03	22	25	44	47	40	55	0.48
gi|119709791|ref|YP_919131.1|	56	Se-cys_synth_N	Selenocysteine	6.9	2.1	0.01	7.5	11	38	37	52	5	54	0.71
gi|119709792|ref|YP_919132.1|	65	Regulator_TrmB	Archaeal	12.8	0.3	2.8e-06	0.05	2	54	7	58	6	63	0.92
gi|119709793|ref|YP_919133.1|	633	ERCC3_RAD25_C	ERCC3/RAD25/XPB	46.1	0.0	1.6e-15	3.5e-12	29	179	478	622	426	628	0.80
gi|119709793|ref|YP_919133.1|	633	Helicase_C	Helicase	38.3	0.0	6.2e-13	1.4e-09	6	109	498	596	493	598	0.84
gi|119709793|ref|YP_919133.1|	633	ResIII	Type	35.9	0.0	3.2e-12	7.2e-09	3	170	257	401	255	402	0.78
gi|119709793|ref|YP_919133.1|	633	ResIII	Type	-2.4	0.0	1.8	4e+03	42	72	499	527	496	546	0.79
gi|119709793|ref|YP_919133.1|	633	DEAD	DEAD/DEAH	33.0	0.0	2.1e-11	4.6e-08	2	173	260	405	259	407	0.82
gi|119709793|ref|YP_919133.1|	633	TelA	Toxic	18.4	0.3	3.9e-07	0.00088	59	127	420	488	398	491	0.83
gi|119709793|ref|YP_919133.1|	633	SecA_DEAD	SecA	14.5	0.0	7.2e-06	0.016	11	137	140	318	129	336	0.71
gi|119709793|ref|YP_919133.1|	633	SecA_DEAD	SecA	-0.6	0.2	0.28	6.3e+02	34	72	451	490	437	528	0.62
gi|119709793|ref|YP_919133.1|	633	AAA_30	AAA	10.1	0.0	0.00021	0.48	3	118	259	392	257	398	0.69
gi|119709793|ref|YP_919133.1|	633	AAA_30	AAA	0.7	0.0	0.17	3.8e+02	33	70	497	533	495	569	0.74
gi|119709793|ref|YP_919133.1|	633	Not3	Not1	2.3	0.1	0.043	96	117	156	110	149	87	187	0.76
gi|119709793|ref|YP_919133.1|	633	Not3	Not1	9.6	0.7	0.00025	0.56	16	60	445	487	437	505	0.87
gi|119709795|ref|YP_919135.1|	155	DUF3909	Protein	13.2	0.2	8.6e-06	0.077	27	99	41	112	36	127	0.88
gi|119709795|ref|YP_919135.1|	155	P22_Tail-4	P22	11.6	0.6	2.2e-05	0.2	42	75	119	152	109	155	0.86
gi|119709798|ref|YP_919138.1|	94	S-layer	S-layer	12.3	0.2	3.7e-06	0.066	5	75	8	80	4	83	0.83
gi|119709799|ref|YP_919139.1|	169	Ecotin	Ecotin	14.4	0.0	3.2e-06	0.028	13	82	32	99	24	128	0.80
gi|119709799|ref|YP_919139.1|	169	DUF4979	Domain	12.1	0.0	1.9e-05	0.17	41	92	69	118	54	150	0.69
gi|119709805|ref|YP_919145.1|	164	UL41A	Herpesvirus	12.9	0.1	1e-05	0.089	11	43	123	155	113	163	0.86
gi|119709805|ref|YP_919145.1|	164	Imm70	Immunity	11.1	0.0	2.5e-05	0.22	32	94	17	80	13	100	0.86
gi|119709807|ref|YP_919147.1|	153	zf_C2H2_10	C2H2	3.4	0.7	0.0031	55	5	12	17	24	16	25	0.89
gi|119709807|ref|YP_919147.1|	153	zf_C2H2_10	C2H2	6.1	0.1	0.00045	8.1	13	22	100	109	98	110	0.94
gi|119709808|ref|YP_919148.1|	172	Vitellogenin_N	Lipoprotein	8.8	0.0	2.6e-05	0.47	428	467	10	49	7	82	0.82
gi|119709808|ref|YP_919148.1|	172	Vitellogenin_N	Lipoprotein	2.7	0.0	0.0019	33	196	250	84	139	54	156	0.73
gi|119709809|ref|YP_919149.1|	278	Phage_integrase	Phage	117.4	0.0	9.5e-38	5.7e-34	3	170	104	262	102	264	0.95
gi|119709809|ref|YP_919149.1|	278	Phage_int_SAM_1	Phage	18.7	0.0	2.7e-07	0.0016	8	80	19	85	13	86	0.88
gi|119709809|ref|YP_919149.1|	278	Phage_int_SAM_1	Phage	0.7	0.0	0.11	6.8e+02	36	69	212	246	200	251	0.69
gi|119709809|ref|YP_919149.1|	278	Phage_int_SAM_1	Phage	1.7	0.0	0.055	3.3e+02	24	57	238	271	217	276	0.83
gi|119709809|ref|YP_919149.1|	278	DUF4224	Domain	10.9	0.0	5.6e-05	0.33	11	32	48	69	45	80	0.82